Query 005713
Match_columns 681
No_of_seqs 635 out of 4071
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 12:37:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1217 TypA Predicted membran 100.0 6E-176 1E-180 1362.7 50.1 593 87-681 3-596 (603)
2 TIGR01394 TypA_BipA GTP-bindin 100.0 1E-150 3E-155 1277.5 61.1 591 89-681 1-592 (594)
3 PRK10218 GTP-binding protein; 100.0 7E-148 2E-152 1252.5 61.6 593 87-681 3-597 (607)
4 KOG0462 Elongation factor-type 100.0 8E-100 2E-104 806.8 33.6 559 84-673 55-642 (650)
5 COG0480 FusA Translation elong 100.0 8.7E-83 1.9E-87 724.8 47.7 457 86-564 7-683 (697)
6 KOG0465 Mitochondrial elongati 100.0 7.9E-81 1.7E-85 667.9 25.1 453 87-565 37-714 (721)
7 PRK05433 GTP-binding protein L 100.0 3.5E-78 7.6E-83 687.9 46.6 445 84-561 2-482 (600)
8 TIGR01393 lepA GTP-binding pro 100.0 5.7E-78 1.2E-82 685.6 48.1 474 88-596 2-512 (595)
9 PRK00007 elongation factor G; 100.0 4.8E-77 1E-81 693.3 45.3 457 85-565 6-684 (693)
10 TIGR00484 EF-G translation elo 100.0 1.5E-75 3.2E-80 681.7 45.7 457 85-565 6-681 (689)
11 PRK12739 elongation factor G; 100.0 1.9E-75 4.2E-80 680.3 45.6 457 86-566 5-682 (691)
12 PRK07560 elongation factor EF- 100.0 1.9E-74 4E-79 675.2 43.9 472 79-564 10-705 (731)
13 COG0481 LepA Membrane GTPase L 100.0 7E-75 1.5E-79 607.2 35.0 481 84-600 4-522 (603)
14 PRK13351 elongation factor G; 100.0 8.7E-74 1.9E-78 668.2 46.8 456 86-564 5-680 (687)
15 TIGR00490 aEF-2 translation el 100.0 1.3E-71 2.8E-76 649.7 42.6 470 81-564 11-703 (720)
16 PRK12740 elongation factor G; 100.0 5.5E-71 1.2E-75 643.7 44.4 446 95-564 1-662 (668)
17 PLN00116 translation elongatio 100.0 5E-70 1.1E-74 644.5 44.2 477 79-565 9-810 (843)
18 PTZ00416 elongation factor 2; 100.0 1.6E-68 3.6E-73 630.4 44.7 474 81-565 11-803 (836)
19 KOG0464 Elongation factor G [T 100.0 3.7E-63 8E-68 508.7 14.3 454 87-562 35-739 (753)
20 PRK00741 prfC peptide chain re 100.0 3.6E-57 7.8E-62 507.8 38.3 365 87-475 8-469 (526)
21 TIGR00503 prfC peptide chain r 100.0 2.2E-56 4.7E-61 501.6 37.2 365 86-474 8-469 (527)
22 KOG0469 Elongation factor 2 [T 100.0 4.8E-57 1E-61 472.5 26.6 476 81-566 11-810 (842)
23 KOG0468 U5 snRNP-specific prot 100.0 5.2E-48 1.1E-52 415.9 31.0 480 76-565 115-911 (971)
24 COG4108 PrfC Peptide chain rel 100.0 1.8E-46 4E-51 391.0 23.4 356 88-467 11-463 (528)
25 KOG0467 Translation elongation 100.0 5.6E-45 1.2E-49 399.6 27.0 468 84-561 4-829 (887)
26 COG5256 TEF1 Translation elong 100.0 9.5E-42 2E-46 357.0 27.1 285 86-379 4-319 (428)
27 PLN00043 elongation factor 1-a 100.0 1.6E-40 3.4E-45 367.6 27.4 281 86-376 4-318 (447)
28 PLN03126 Elongation factor Tu; 100.0 1.4E-39 2.9E-44 361.4 29.8 285 85-376 77-376 (478)
29 PTZ00141 elongation factor 1- 100.0 1.1E-39 2.5E-44 361.0 28.6 281 86-376 4-318 (446)
30 CHL00071 tufA elongation facto 100.0 1.2E-39 2.5E-44 358.7 28.4 284 86-376 9-307 (409)
31 PRK12736 elongation factor Tu; 100.0 1.5E-39 3.2E-44 356.3 28.2 282 86-376 9-297 (394)
32 TIGR00485 EF-Tu translation el 100.0 6E-39 1.3E-43 351.8 27.1 282 86-376 9-297 (394)
33 PRK12735 elongation factor Tu; 100.0 9.1E-39 2E-43 350.2 28.1 284 86-376 9-299 (396)
34 PRK00049 elongation factor Tu; 100.0 1.1E-38 2.4E-43 349.3 27.4 284 86-376 9-299 (396)
35 PRK12317 elongation factor 1-a 100.0 2.7E-38 5.8E-43 350.5 27.5 282 86-377 3-311 (425)
36 PLN03127 Elongation factor Tu; 100.0 1.1E-37 2.4E-42 344.6 30.2 286 85-376 57-350 (447)
37 TIGR02034 CysN sulfate adenyly 100.0 1.3E-37 2.7E-42 342.1 28.4 280 90-377 1-301 (406)
38 COG0050 TufB GTPases - transla 100.0 7.2E-38 1.6E-42 311.6 18.1 286 86-380 9-301 (394)
39 TIGR00483 EF-1_alpha translati 100.0 4.4E-37 9.6E-42 340.7 25.7 282 86-377 4-313 (426)
40 KOG0460 Mitochondrial translat 100.0 3.5E-38 7.6E-43 319.2 15.2 287 87-380 52-345 (449)
41 PRK05124 cysN sulfate adenylyl 100.0 1.7E-36 3.8E-41 338.0 29.1 283 86-377 24-329 (474)
42 PRK05306 infB translation init 100.0 1.8E-34 3.9E-39 334.3 31.6 303 87-434 288-622 (787)
43 PTZ00327 eukaryotic translatio 100.0 4.7E-35 1E-39 323.0 24.6 260 87-377 32-352 (460)
44 KOG0458 Elongation factor 1 al 100.0 1.7E-34 3.7E-39 312.0 24.6 280 85-374 173-488 (603)
45 PRK05506 bifunctional sulfate 100.0 4.5E-34 9.9E-39 330.7 29.3 278 88-377 23-325 (632)
46 PRK10512 selenocysteinyl-tRNA- 100.0 5.1E-34 1.1E-38 326.2 27.3 251 91-376 2-260 (614)
47 PRK04000 translation initiatio 100.0 2.3E-33 5.1E-38 308.3 28.1 261 86-377 6-319 (411)
48 COG2895 CysN GTPases - Sulfate 100.0 9E-34 1.9E-38 289.3 21.6 283 88-378 5-308 (431)
49 TIGR00487 IF-2 translation ini 100.0 8.8E-33 1.9E-37 313.7 32.0 300 88-434 86-420 (587)
50 TIGR03680 eif2g_arch translati 100.0 6.1E-33 1.3E-37 305.2 28.1 259 88-377 3-314 (406)
51 TIGR00475 selB selenocysteine- 100.0 9.2E-33 2E-37 315.0 27.0 251 91-374 2-259 (581)
52 CHL00189 infB translation init 100.0 7.1E-32 1.5E-36 310.0 25.8 253 87-375 242-501 (742)
53 COG3276 SelB Selenocysteine-sp 100.0 1.7E-31 3.6E-36 282.1 20.6 250 91-376 2-256 (447)
54 cd01885 EF2 EF2 (for archaea a 100.0 4.9E-31 1.1E-35 265.9 18.2 190 90-281 1-222 (222)
55 PF00009 GTP_EFTU: Elongation 100.0 7.4E-31 1.6E-35 259.2 12.8 182 88-280 2-188 (188)
56 cd01884 EF_Tu EF-Tu subfamily. 100.0 2.5E-29 5.3E-34 249.3 18.2 191 89-281 2-195 (195)
57 KOG1145 Mitochondrial translat 100.0 3.2E-29 6.9E-34 267.9 19.4 251 88-374 152-406 (683)
58 cd04168 TetM_like Tet(M)-like 100.0 6.2E-29 1.4E-33 253.9 16.6 181 91-281 1-237 (237)
59 cd01891 TypA_BipA TypA (tyrosi 100.0 2.2E-28 4.7E-33 242.7 19.0 194 88-281 1-194 (194)
60 COG0532 InfB Translation initi 100.0 4.7E-28 1E-32 262.4 22.3 252 88-375 4-261 (509)
61 cd01886 EF-G Elongation factor 100.0 1.2E-28 2.7E-33 256.1 17.2 142 91-232 1-144 (270)
62 COG5258 GTPBP1 GTPase [General 100.0 3.4E-28 7.5E-33 250.1 19.9 278 86-380 114-441 (527)
63 cd04169 RF3 RF3 subfamily. Pe 100.0 4E-28 8.6E-33 252.0 19.1 144 89-232 2-151 (267)
64 PRK04004 translation initiatio 100.0 1.4E-27 3.1E-32 271.9 25.1 274 88-374 5-327 (586)
65 KOG0459 Polypeptide release fa 100.0 1.9E-28 4.2E-33 253.7 14.0 284 86-379 76-393 (501)
66 COG5257 GCD11 Translation init 100.0 3.9E-27 8.5E-32 237.9 21.3 255 88-373 9-311 (415)
67 KOG0461 Selenocysteine-specifi 99.9 3.5E-27 7.5E-32 239.4 18.2 250 89-360 7-267 (522)
68 TIGR00491 aIF-2 translation in 99.9 2.4E-26 5.2E-31 260.8 25.5 259 88-373 3-324 (590)
69 cd01883 EF1_alpha Eukaryotic e 99.9 7.2E-27 1.6E-31 236.4 14.9 184 91-277 1-215 (219)
70 cd04166 CysN_ATPS CysN_ATPS su 99.9 7.2E-26 1.6E-30 227.2 17.9 187 91-281 1-207 (208)
71 cd01890 LepA LepA subfamily. 99.9 1.3E-24 2.8E-29 211.9 17.9 174 90-281 1-179 (179)
72 cd04167 Snu114p Snu114p subfam 99.9 1E-24 2.2E-29 219.8 16.9 190 90-281 1-213 (213)
73 cd04170 EF-G_bact Elongation f 99.9 1.2E-24 2.5E-29 227.0 16.7 142 91-232 1-144 (268)
74 cd01889 SelB_euk SelB subfamil 99.9 8E-24 1.7E-28 209.6 16.1 174 90-282 1-189 (192)
75 cd01888 eIF2_gamma eIF2-gamma 99.9 7.7E-24 1.7E-28 211.7 14.7 166 90-282 1-202 (203)
76 PRK14845 translation initiatio 99.9 1.2E-22 2.7E-27 240.4 23.9 247 102-375 474-783 (1049)
77 cd00881 GTP_translation_factor 99.9 1.9E-22 4.1E-27 197.5 17.9 181 91-281 1-189 (189)
78 cd04165 GTPBP1_like GTPBP1-lik 99.9 2E-22 4.3E-27 204.2 15.0 178 91-281 1-224 (224)
79 KOG0463 GTP-binding protein GP 99.9 1.3E-21 2.9E-26 200.6 11.5 270 90-376 134-456 (641)
80 cd04171 SelB SelB subfamily. 99.8 1.4E-20 3.1E-25 179.9 15.9 158 91-275 2-162 (164)
81 smart00838 EFG_C Elongation fa 99.8 7E-21 1.5E-25 163.2 7.7 83 480-564 1-83 (85)
82 PF00679 EFG_C: Elongation fac 99.8 7.2E-21 1.6E-25 164.5 6.8 86 479-565 1-86 (89)
83 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.6E-19 3.4E-24 173.7 16.6 162 90-278 1-165 (168)
84 cd04097 mtEFG1_C mtEFG1_C: C-t 99.8 2.6E-20 5.7E-25 156.9 8.4 78 482-561 1-78 (78)
85 cd03711 Tet_C Tet_C: C-terminu 99.8 2.7E-20 5.7E-25 156.9 8.1 78 482-561 1-78 (78)
86 cd03709 lepA_C lepA_C: This fa 99.8 2.7E-20 5.9E-25 157.4 8.0 78 482-560 1-79 (80)
87 cd03710 BipA_TypA_C BipA_TypA_ 99.8 5E-20 1.1E-24 155.6 9.3 78 482-560 1-78 (79)
88 cd04096 eEF2_snRNP_like_C eEF2 99.8 6.6E-20 1.4E-24 155.3 8.1 80 482-561 1-80 (80)
89 cd04098 eEF2_C_snRNP eEF2_C_sn 99.8 8.7E-20 1.9E-24 154.3 7.8 80 482-561 1-80 (80)
90 KOG1144 Translation initiation 99.8 2.3E-19 4.9E-24 197.2 11.9 217 88-330 474-741 (1064)
91 cd04160 Arfrp1 Arfrp1 subfamil 99.8 7E-19 1.5E-23 169.3 14.0 161 91-276 1-166 (167)
92 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.8 1.5E-18 3.1E-23 164.9 15.5 165 87-283 20-189 (221)
93 cd01864 Rab19 Rab19 subfamily. 99.8 2E-18 4.4E-23 166.1 16.3 157 88-277 2-164 (165)
94 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.8 2E-19 4.2E-24 151.7 7.5 78 482-561 1-78 (78)
95 KOG1143 Predicted translation 99.8 2.6E-18 5.7E-23 176.5 16.2 283 90-399 168-504 (591)
96 COG1160 Predicted GTPases [Gen 99.8 6.5E-18 1.4E-22 181.1 19.8 153 90-279 4-165 (444)
97 cd01894 EngA1 EngA1 subfamily. 99.8 3E-18 6.4E-23 162.4 14.7 149 93-278 1-157 (157)
98 cd04124 RabL2 RabL2 subfamily. 99.8 5E-18 1.1E-22 163.1 15.3 155 90-279 1-158 (161)
99 KOG0466 Translation initiation 99.8 4.6E-19 1E-23 177.9 7.4 251 83-364 32-341 (466)
100 cd01514 Elongation_Factor_C El 99.8 8.9E-19 1.9E-23 148.0 8.0 79 482-561 1-79 (79)
101 TIGR03594 GTPase_EngA ribosome 99.8 3.5E-18 7.6E-23 190.2 14.5 162 88-278 171-343 (429)
102 cd04113 Rab4 Rab4 subfamily. 99.8 9.8E-18 2.1E-22 160.4 15.3 156 90-277 1-160 (161)
103 cd04145 M_R_Ras_like M-Ras/R-R 99.8 1.1E-17 2.4E-22 160.1 15.6 157 89-278 2-163 (164)
104 PRK15494 era GTPase Era; Provi 99.8 1.1E-17 2.4E-22 179.9 16.9 160 88-281 51-218 (339)
105 cd01860 Rab5_related Rab5-rela 99.8 1.6E-17 3.5E-22 159.0 16.3 158 90-279 2-163 (163)
106 KOG0084 GTPase Rab1/YPT1, smal 99.8 5.6E-18 1.2E-22 161.7 12.8 161 86-278 6-171 (205)
107 cd01865 Rab3 Rab3 subfamily. 99.8 1.3E-17 2.9E-22 160.6 15.6 158 90-279 2-163 (165)
108 TIGR00436 era GTP-binding prot 99.8 1.5E-17 3.3E-22 173.7 16.8 156 91-281 2-166 (270)
109 KOG0092 GTPase Rab5/YPT51 and 99.8 5.2E-18 1.1E-22 161.3 12.0 164 88-283 4-171 (200)
110 cd04106 Rab23_lke Rab23-like s 99.8 2E-17 4.2E-22 158.2 16.1 155 91-277 2-161 (162)
111 cd04122 Rab14 Rab14 subfamily. 99.8 1.9E-17 4.2E-22 159.5 15.9 158 89-278 2-163 (166)
112 cd01895 EngA2 EngA2 subfamily. 99.8 1.7E-17 3.6E-22 159.5 15.4 161 89-277 2-173 (174)
113 COG1160 Predicted GTPases [Gen 99.8 1E-17 2.2E-22 179.6 15.1 209 88-327 177-405 (444)
114 cd01867 Rab8_Rab10_Rab13_like 99.7 2.5E-17 5.3E-22 159.1 16.3 159 88-278 2-164 (167)
115 cd04154 Arl2 Arl2 subfamily. 99.7 1.5E-17 3.2E-22 161.7 14.7 155 88-276 13-172 (173)
116 PRK00093 GTP-binding protein D 99.7 3E-17 6.5E-22 183.1 19.2 159 88-276 172-341 (435)
117 cd04114 Rab30 Rab30 subfamily. 99.7 2.5E-17 5.4E-22 158.8 16.1 158 87-278 5-168 (169)
118 cd04157 Arl6 Arl6 subfamily. 99.7 1.2E-17 2.5E-22 159.7 13.4 153 91-276 1-161 (162)
119 PF02421 FeoB_N: Ferrous iron 99.7 6.8E-18 1.5E-22 160.2 11.5 147 91-274 2-156 (156)
120 cd04119 RJL RJL (RabJ-Like) su 99.7 3.1E-17 6.7E-22 157.2 16.3 156 91-278 2-166 (168)
121 smart00173 RAS Ras subfamily o 99.7 1.9E-17 4.2E-22 158.7 14.8 157 90-279 1-162 (164)
122 cd01866 Rab2 Rab2 subfamily. 99.7 3.2E-17 7E-22 158.5 16.4 159 88-278 3-165 (168)
123 cd04138 H_N_K_Ras_like H-Ras/N 99.7 2.3E-17 4.9E-22 157.2 15.0 155 90-278 2-161 (162)
124 TIGR03594 GTPase_EngA ribosome 99.7 3.3E-17 7.1E-22 182.4 18.3 154 91-281 1-162 (429)
125 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 3.5E-17 7.7E-22 163.2 16.6 159 90-279 1-168 (201)
126 cd01862 Rab7 Rab7 subfamily. 99.7 3.9E-17 8.5E-22 157.6 16.2 158 90-278 1-166 (172)
127 cd04120 Rab12 Rab12 subfamily. 99.7 3.5E-17 7.6E-22 163.4 16.2 156 91-278 2-162 (202)
128 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 3.9E-17 8.5E-22 157.2 15.9 158 89-278 2-163 (166)
129 cd01868 Rab11_like Rab11-like. 99.7 5E-17 1.1E-21 156.2 16.5 158 89-278 3-164 (165)
130 KOG0078 GTP-binding protein SE 99.7 3.4E-17 7.3E-22 158.7 15.2 164 85-280 8-175 (207)
131 cd04121 Rab40 Rab40 subfamily. 99.7 3.9E-17 8.4E-22 161.4 15.9 160 87-278 4-166 (189)
132 cd04136 Rap_like Rap-like subf 99.7 3.6E-17 7.8E-22 156.4 15.2 156 90-278 2-162 (163)
133 COG1159 Era GTPase [General fu 99.7 2.6E-17 5.5E-22 167.8 14.8 161 89-281 6-174 (298)
134 cd04116 Rab9 Rab9 subfamily. 99.7 5.4E-17 1.2E-21 156.8 16.4 158 88-277 4-169 (170)
135 cd01861 Rab6 Rab6 subfamily. 99.7 6.1E-17 1.3E-21 154.6 16.6 154 90-277 1-160 (161)
136 PRK03003 GTP-binding protein D 99.7 7.8E-17 1.7E-21 181.1 19.9 157 87-280 36-200 (472)
137 PTZ00369 Ras-like protein; Pro 99.7 4.6E-17 9.9E-22 160.8 15.4 158 89-279 5-167 (189)
138 cd04151 Arl1 Arl1 subfamily. 99.7 4.6E-17 1E-21 155.6 15.0 151 91-276 1-157 (158)
139 cd00877 Ran Ran (Ras-related n 99.7 4.9E-17 1.1E-21 157.2 15.0 156 90-279 1-159 (166)
140 smart00175 RAB Rab subfamily o 99.7 6.7E-17 1.5E-21 154.6 15.8 156 90-279 1-162 (164)
141 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 5.2E-17 1.1E-21 159.6 15.3 162 89-279 3-170 (183)
142 cd04127 Rab27A Rab27a subfamil 99.7 7.2E-17 1.6E-21 157.4 16.0 159 88-278 3-176 (180)
143 TIGR03598 GTPase_YsxC ribosome 99.7 6.3E-17 1.4E-21 158.4 15.4 152 83-256 12-177 (179)
144 cd01863 Rab18 Rab18 subfamily. 99.7 6.8E-17 1.5E-21 154.5 14.8 155 90-277 1-160 (161)
145 cd00878 Arf_Arl Arf (ADP-ribos 99.7 5.6E-17 1.2E-21 154.7 14.2 152 91-276 1-157 (158)
146 cd01898 Obg Obg subfamily. Th 99.7 7.7E-17 1.7E-21 155.4 15.2 153 91-277 2-169 (170)
147 cd04175 Rap1 Rap1 subgroup. T 99.7 1.1E-16 2.3E-21 153.8 16.0 156 90-278 2-162 (164)
148 cd04164 trmE TrmE (MnmE, ThdF, 99.7 8.9E-17 1.9E-21 152.1 15.2 147 90-278 2-156 (157)
149 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 9.2E-17 2E-21 156.0 15.5 157 91-278 2-164 (170)
150 cd01897 NOG NOG1 is a nucleola 99.7 9.8E-17 2.1E-21 154.5 15.4 153 90-278 1-167 (168)
151 cd00154 Rab Rab family. Rab G 99.7 1.3E-16 2.9E-21 150.5 15.9 154 90-275 1-158 (159)
152 cd04140 ARHI_like ARHI subfami 99.7 1.2E-16 2.6E-21 153.9 15.8 155 90-277 2-163 (165)
153 PRK03003 GTP-binding protein D 99.7 5.2E-17 1.1E-21 182.5 15.1 160 88-278 210-381 (472)
154 cd04112 Rab26 Rab26 subfamily. 99.7 8.5E-17 1.9E-21 159.1 14.9 160 90-281 1-165 (191)
155 cd01879 FeoB Ferrous iron tran 99.7 6.8E-17 1.5E-21 153.5 13.5 148 94-278 1-156 (158)
156 cd04123 Rab21 Rab21 subfamily. 99.7 1.9E-16 4.1E-21 150.8 16.2 157 90-278 1-161 (162)
157 PLN03110 Rab GTPase; Provision 99.7 1.5E-16 3.3E-21 160.7 16.3 161 88-280 11-175 (216)
158 cd04110 Rab35 Rab35 subfamily. 99.7 1.7E-16 3.6E-21 158.2 16.1 160 88-279 5-167 (199)
159 cd04149 Arf6 Arf6 subfamily. 99.7 1.3E-16 2.9E-21 154.5 15.0 154 89-276 9-167 (168)
160 cd04115 Rab33B_Rab33A Rab33B/R 99.7 1.8E-16 3.8E-21 153.6 15.8 161 89-278 2-168 (170)
161 cd04158 ARD1 ARD1 subfamily. 99.7 1.2E-16 2.6E-21 154.8 14.6 157 91-280 1-162 (169)
162 cd04150 Arf1_5_like Arf1-Arf5- 99.7 2.2E-16 4.8E-21 151.5 16.2 152 91-276 2-158 (159)
163 cd04109 Rab28 Rab28 subfamily. 99.7 1.9E-16 4.1E-21 159.8 16.5 158 90-279 1-166 (215)
164 cd04133 Rop_like Rop subfamily 99.7 1.1E-16 2.4E-21 156.4 14.2 159 90-280 2-174 (176)
165 cd00879 Sar1 Sar1 subfamily. 99.7 7.5E-17 1.6E-21 159.0 13.1 160 87-278 17-190 (190)
166 cd04128 Spg1 Spg1p. Spg1p (se 99.7 1.5E-16 3.3E-21 156.3 15.2 157 91-279 2-166 (182)
167 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 1.7E-16 3.6E-21 153.2 14.8 159 92-276 2-163 (164)
168 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 1.9E-16 4.1E-21 154.1 15.0 157 90-279 3-164 (172)
169 PRK00093 GTP-binding protein D 99.7 3.1E-16 6.7E-21 174.9 18.7 154 90-280 2-163 (435)
170 cd04161 Arl2l1_Arl13_like Arl2 99.7 1.8E-16 4E-21 153.3 14.6 159 91-276 1-166 (167)
171 cd04118 Rab24 Rab24 subfamily. 99.7 2.4E-16 5.2E-21 155.8 15.6 157 91-278 2-165 (193)
172 cd04147 Ras_dva Ras-dva subfam 99.7 1.3E-16 2.9E-21 158.7 13.8 158 91-281 1-165 (198)
173 cd04144 Ras2 Ras2 subfamily. 99.7 1.8E-16 4E-21 156.6 14.6 156 91-279 1-163 (190)
174 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 3.3E-16 7.1E-21 152.6 16.1 154 88-276 14-173 (174)
175 PLN00223 ADP-ribosylation fact 99.7 3.4E-16 7.4E-21 153.7 16.3 156 88-278 16-177 (181)
176 PLN03108 Rab family protein; P 99.7 3.2E-16 7E-21 157.6 16.5 160 87-278 4-167 (210)
177 cd04176 Rap2 Rap2 subgroup. T 99.7 2.8E-16 6.2E-21 150.6 15.4 156 90-278 2-162 (163)
178 smart00177 ARF ARF-like small 99.7 4.3E-16 9.4E-21 151.9 16.8 156 88-278 12-173 (175)
179 PLN03071 GTP-binding nuclear p 99.7 2.2E-16 4.7E-21 159.9 14.9 159 87-279 11-172 (219)
180 PLN03118 Rab family protein; P 99.7 4.2E-16 9.2E-21 156.7 16.8 159 88-279 13-177 (211)
181 cd04139 RalA_RalB RalA/RalB su 99.7 2.3E-16 5E-21 150.7 14.1 156 90-278 1-161 (164)
182 cd01893 Miro1 Miro1 subfamily. 99.7 4.1E-16 8.8E-21 150.5 15.8 157 91-278 2-163 (166)
183 PRK09518 bifunctional cytidyla 99.7 5.1E-16 1.1E-20 182.5 19.2 156 88-280 274-437 (712)
184 cd04126 Rab20 Rab20 subfamily. 99.7 4.8E-16 1E-20 157.1 16.4 160 90-278 1-189 (220)
185 cd04177 RSR1 RSR1 subgroup. R 99.7 3.4E-16 7.4E-21 151.2 14.7 158 90-279 2-164 (168)
186 cd04142 RRP22 RRP22 subfamily. 99.7 2.5E-16 5.3E-21 156.9 14.0 158 90-280 1-175 (198)
187 KOG0080 GTPase Rab18, small G 99.7 1.3E-16 2.9E-21 146.5 11.0 164 87-282 9-178 (209)
188 cd04117 Rab15 Rab15 subfamily. 99.7 6.5E-16 1.4E-20 148.4 16.4 155 91-277 2-160 (161)
189 COG2229 Predicted GTPase [Gene 99.7 4.8E-16 1E-20 147.4 15.0 165 89-277 10-176 (187)
190 cd04134 Rho3 Rho3 subfamily. 99.7 2.5E-16 5.4E-21 155.6 13.8 162 90-282 1-177 (189)
191 PRK00089 era GTPase Era; Revie 99.7 5.6E-16 1.2E-20 163.7 17.4 161 88-280 4-172 (292)
192 cd04135 Tc10 TC10 subfamily. 99.7 2.1E-16 4.6E-21 153.1 12.8 158 90-278 1-173 (174)
193 cd01875 RhoG RhoG subfamily. 99.7 4.4E-16 9.5E-21 154.2 15.1 163 89-282 3-180 (191)
194 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 5E-16 1.1E-20 152.6 15.4 159 88-277 4-178 (182)
195 cd01874 Cdc42 Cdc42 subfamily. 99.7 4.3E-16 9.4E-21 152.0 14.9 155 90-277 2-173 (175)
196 PRK09518 bifunctional cytidyla 99.7 1.5E-16 3.4E-21 186.9 13.8 207 88-325 449-673 (712)
197 cd01871 Rac1_like Rac1-like su 99.7 4.6E-16 9.9E-21 151.7 14.9 157 90-277 2-173 (174)
198 cd03690 Tet_II Tet_II: This su 99.7 1.7E-16 3.8E-21 135.9 10.3 85 286-374 1-85 (85)
199 cd01878 HflX HflX subfamily. 99.7 3.8E-16 8.3E-21 156.0 14.4 153 87-278 39-204 (204)
200 cd04156 ARLTS1 ARLTS1 subfamil 99.7 5.8E-16 1.3E-20 147.8 14.9 153 91-276 1-159 (160)
201 PRK00454 engB GTP-binding prot 99.7 8.4E-16 1.8E-20 152.0 16.5 161 85-279 20-194 (196)
202 cd04159 Arl10_like Arl10-like 99.7 9.5E-16 2.1E-20 144.8 16.1 151 92-276 2-158 (159)
203 cd00876 Ras Ras family. The R 99.7 5.3E-16 1.2E-20 147.4 14.3 155 91-278 1-160 (160)
204 smart00176 RAN Ran (Ras-relate 99.7 3.9E-16 8.4E-21 155.6 13.9 151 95-279 1-154 (200)
205 smart00178 SAR Sar1p-like memb 99.7 4.3E-16 9.3E-21 153.3 14.0 159 87-277 15-183 (184)
206 cd04125 RabA_like RabA-like su 99.7 8.3E-16 1.8E-20 151.5 16.0 158 90-279 1-162 (188)
207 cd04163 Era Era subfamily. Er 99.7 1.7E-15 3.6E-20 144.2 17.5 157 89-277 3-167 (168)
208 cd04101 RabL4 RabL4 (Rab-like4 99.7 1E-15 2.2E-20 146.8 16.1 158 91-278 2-163 (164)
209 PRK15467 ethanolamine utilizat 99.7 3.5E-16 7.6E-21 150.2 12.8 143 90-280 2-148 (158)
210 cd04146 RERG_RasL11_like RERG/ 99.7 4E-16 8.6E-21 150.1 12.8 156 91-278 1-163 (165)
211 KOG0095 GTPase Rab30, small G 99.7 4E-16 8.6E-21 141.5 11.8 162 85-278 3-168 (213)
212 PTZ00133 ADP-ribosylation fact 99.7 1.1E-15 2.4E-20 150.1 16.2 155 89-278 17-177 (182)
213 cd04131 Rnd Rnd subfamily. Th 99.7 7.3E-16 1.6E-20 150.9 14.8 157 90-277 2-174 (178)
214 KOG0098 GTPase Rab2, small G p 99.7 6.4E-16 1.4E-20 145.8 13.5 160 87-278 4-167 (216)
215 cd01892 Miro2 Miro2 subfamily. 99.7 7.4E-16 1.6E-20 149.4 14.4 161 88-279 3-166 (169)
216 PRK05291 trmE tRNA modificatio 99.7 4.4E-16 9.5E-21 173.5 14.4 148 89-279 215-370 (449)
217 PRK04213 GTP-binding protein; 99.7 1.6E-15 3.4E-20 151.1 16.9 159 88-281 8-194 (201)
218 cd04132 Rho4_like Rho4-like su 99.7 1E-15 2.2E-20 150.5 15.3 159 90-279 1-167 (187)
219 TIGR00231 small_GTP small GTP- 99.7 4.5E-16 9.7E-21 146.2 12.1 149 90-274 2-159 (161)
220 cd00157 Rho Rho (Ras homology) 99.7 6.4E-16 1.4E-20 148.9 13.4 156 90-276 1-170 (171)
221 cd04111 Rab39 Rab39 subfamily. 99.7 1.1E-15 2.5E-20 153.7 15.6 159 89-279 2-166 (211)
222 cd04143 Rhes_like Rhes_like su 99.7 1.1E-15 2.3E-20 157.4 15.4 161 90-282 1-174 (247)
223 smart00174 RHO Rho (Ras homolo 99.7 8.2E-16 1.8E-20 149.0 13.7 156 92-278 1-171 (174)
224 cd04137 RheB Rheb (Ras Homolog 99.7 8.4E-16 1.8E-20 150.0 13.8 156 90-278 2-162 (180)
225 cd04155 Arl3 Arl3 subfamily. 99.7 2.3E-15 5E-20 145.7 16.5 155 87-276 12-172 (173)
226 KOG0394 Ras-related GTPase [Ge 99.7 4.5E-16 9.6E-21 146.7 11.0 164 87-280 7-179 (210)
227 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.7 1.6E-15 3.5E-20 154.2 15.6 159 89-278 13-187 (232)
228 cd04130 Wrch_1 Wrch-1 subfamil 99.7 1.2E-15 2.5E-20 148.3 13.7 155 90-275 1-170 (173)
229 TIGR02528 EutP ethanolamine ut 99.6 9.4E-16 2E-20 143.7 12.1 136 91-275 2-141 (142)
230 KOG0093 GTPase Rab3, small G p 99.6 1.1E-15 2.3E-20 138.6 11.7 162 87-280 19-184 (193)
231 cd00880 Era_like Era (E. coli 99.6 3.5E-15 7.6E-20 140.1 15.2 154 94-277 1-162 (163)
232 cd04092 mtEFG2_II_like mtEFG2_ 99.6 1E-15 2.2E-20 130.7 10.3 83 289-374 1-83 (83)
233 cd01870 RhoA_like RhoA-like su 99.6 2.1E-15 4.5E-20 146.4 13.6 158 90-278 2-174 (175)
234 TIGR00450 mnmE_trmE_thdF tRNA 99.6 3.2E-15 6.9E-20 165.8 16.8 150 88-278 202-359 (442)
235 KOG0087 GTPase Rab11/YPT3, sma 99.6 1.3E-15 2.8E-20 147.0 11.5 162 85-278 10-175 (222)
236 PRK09554 feoB ferrous iron tra 99.6 2.9E-15 6.4E-20 175.6 16.5 154 89-279 3-168 (772)
237 cd04148 RGK RGK subfamily. Th 99.6 4.8E-15 1E-19 150.2 15.0 156 90-279 1-163 (221)
238 PF00071 Ras: Ras family; Int 99.6 6.7E-15 1.4E-19 140.8 14.9 156 91-278 1-160 (162)
239 TIGR03156 GTP_HflX GTP-binding 99.6 4.1E-15 8.9E-20 160.4 14.7 150 87-277 187-350 (351)
240 PF00025 Arf: ADP-ribosylation 99.6 4.5E-15 9.7E-20 144.9 13.4 159 86-277 11-174 (175)
241 COG0486 ThdF Predicted GTPase 99.6 4.4E-15 9.6E-20 159.8 14.1 154 89-281 217-378 (454)
242 COG0218 Predicted GTPase [Gene 99.6 1.8E-14 3.9E-19 139.8 16.6 165 84-279 19-197 (200)
243 PRK12299 obgE GTPase CgtA; Rev 99.6 9.8E-15 2.1E-19 156.3 16.3 159 88-280 157-329 (335)
244 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 1.1E-14 2.4E-19 147.3 15.4 158 90-277 2-174 (222)
245 cd04088 EFG_mtEFG_II EFG_mtEFG 99.6 4E-15 8.6E-20 126.9 10.2 83 289-374 1-83 (83)
246 cd03689 RF3_II RF3_II: this su 99.6 4.4E-15 9.4E-20 127.1 10.2 81 291-374 1-84 (85)
247 cd01881 Obg_like The Obg-like 99.6 4.9E-15 1.1E-19 143.4 11.9 150 94-277 1-175 (176)
248 cd04103 Centaurin_gamma Centau 99.6 1.4E-14 3E-19 139.0 14.5 149 90-277 1-157 (158)
249 KOG0086 GTPase Rab4, small G p 99.6 5.4E-15 1.2E-19 134.7 10.7 148 86-255 6-157 (214)
250 cd03691 BipA_TypA_II BipA_TypA 99.6 8.8E-15 1.9E-19 125.7 11.2 86 289-374 1-86 (86)
251 TIGR02729 Obg_CgtA Obg family 99.6 2.2E-14 4.7E-19 153.4 16.0 156 88-278 156-328 (329)
252 cd04091 mtEFG1_II_like mtEFG1_ 99.6 1.2E-14 2.5E-19 123.4 10.2 81 289-374 1-81 (81)
253 cd00882 Ras_like_GTPase Ras-li 99.6 1.3E-14 2.7E-19 134.5 11.0 151 94-275 1-156 (157)
254 PRK12298 obgE GTPase CgtA; Rev 99.6 2.9E-14 6.4E-19 155.5 15.6 159 89-280 159-334 (390)
255 cd01876 YihA_EngB The YihA (En 99.6 5.8E-14 1.2E-18 134.0 15.8 155 92-278 2-170 (170)
256 PTZ00132 GTP-binding nuclear p 99.6 6E-14 1.3E-18 141.4 16.4 160 86-279 6-168 (215)
257 PRK12297 obgE GTPase CgtA; Rev 99.6 4.5E-14 9.7E-19 155.0 16.6 153 89-279 158-327 (424)
258 PRK11058 GTPase HflX; Provisio 99.6 2E-14 4.4E-19 158.6 13.9 153 88-280 196-363 (426)
259 PRK12296 obgE GTPase CgtA; Rev 99.6 3.5E-14 7.7E-19 157.6 15.9 157 88-279 158-340 (500)
260 KOG0079 GTP-binding protein H- 99.6 1.7E-14 3.8E-19 130.9 10.2 160 88-279 7-169 (198)
261 cd01882 BMS1 Bms1. Bms1 is an 99.6 1.2E-13 2.6E-18 140.4 17.5 141 87-255 37-182 (225)
262 cd04102 RabL3 RabL3 (Rab-like3 99.5 8.3E-14 1.8E-18 139.0 15.5 168 91-276 2-197 (202)
263 cd01873 RhoBTB RhoBTB subfamil 99.5 6.4E-14 1.4E-18 139.2 14.5 163 90-277 3-194 (195)
264 cd04129 Rho2 Rho2 subfamily. 99.5 5.7E-14 1.2E-18 138.5 13.7 159 90-279 2-173 (187)
265 cd03699 lepA_II lepA_II: This 99.5 3.6E-14 7.8E-19 121.9 10.4 82 289-374 1-86 (86)
266 TIGR00437 feoB ferrous iron tr 99.5 4.7E-14 1E-18 161.9 14.1 146 96-278 1-154 (591)
267 KOG1423 Ras-like GTPase ERA [C 99.5 2.1E-13 4.6E-18 138.3 16.9 168 86-280 69-272 (379)
268 PF10662 PduV-EutP: Ethanolami 99.5 7.4E-14 1.6E-18 129.8 10.4 137 90-275 2-142 (143)
269 KOG0073 GTP-binding ADP-ribosy 99.5 4E-13 8.8E-18 124.5 13.7 145 88-255 15-164 (185)
270 cd04104 p47_IIGP_like p47 (47- 99.5 2.4E-13 5.1E-18 135.4 12.8 168 90-282 2-187 (197)
271 cd04105 SR_beta Signal recogni 99.5 2.3E-13 4.9E-18 136.2 12.5 116 90-222 1-127 (203)
272 PLN00023 GTP-binding protein; 99.5 5.2E-13 1.1E-17 140.1 14.7 120 86-219 18-166 (334)
273 KOG0088 GTPase Rab21, small G 99.5 3.2E-14 7E-19 130.5 4.9 159 88-278 12-174 (218)
274 KOG0097 GTPase Rab14, small G 99.5 5.2E-13 1.1E-17 120.2 12.2 150 85-256 7-160 (215)
275 PF01926 MMR_HSR1: 50S ribosom 99.5 6.4E-13 1.4E-17 120.4 12.5 107 91-213 1-116 (116)
276 cd01896 DRG The developmentall 99.5 7.8E-13 1.7E-17 135.1 14.4 82 91-188 2-90 (233)
277 COG0370 FeoB Fe2+ transport sy 99.4 9.3E-13 2E-17 147.7 15.2 155 90-281 4-166 (653)
278 KOG0075 GTP-binding ADP-ribosy 99.4 4.9E-13 1.1E-17 121.5 10.3 155 90-278 21-181 (186)
279 COG1100 GTPase SAR1 and relate 99.4 2.1E-12 4.4E-17 130.2 14.5 165 90-279 6-185 (219)
280 KOG0083 GTPase Rab26/Rab37, sm 99.4 5.7E-14 1.2E-18 125.3 2.1 153 94-278 2-159 (192)
281 KOG0091 GTPase Rab39, small G 99.4 1.2E-12 2.7E-17 120.9 10.4 158 89-278 8-172 (213)
282 cd04090 eEF2_II_snRNP Loc2 eEF 99.4 3.1E-12 6.6E-17 111.8 11.1 85 289-373 1-92 (94)
283 cd03700 eEF2_snRNP_like_II EF2 99.4 1.7E-12 3.8E-17 113.1 9.2 85 289-373 1-92 (93)
284 PF08477 Miro: Miro-like prote 99.4 1.1E-12 2.3E-17 119.0 8.3 113 91-215 1-119 (119)
285 KOG0081 GTPase Rab27, small G 99.4 2.7E-13 5.8E-18 124.6 4.1 164 88-279 8-185 (219)
286 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 4.1E-12 9E-17 126.3 12.5 114 90-218 1-130 (196)
287 PF14492 EFG_II: Elongation Fa 99.3 1.8E-12 3.9E-17 108.1 7.0 74 386-468 1-75 (75)
288 KOG0395 Ras-related GTPase [Ge 99.3 6.6E-12 1.4E-16 124.6 12.0 159 89-280 3-166 (196)
289 COG3596 Predicted GTPase [Gene 99.3 8.9E-12 1.9E-16 125.7 12.3 169 86-281 36-224 (296)
290 cd01850 CDC_Septin CDC/Septin. 99.3 4.6E-11 9.9E-16 125.1 17.5 123 89-218 4-157 (276)
291 COG2262 HflX GTPases [General 99.3 1.9E-11 4E-16 129.9 14.2 155 86-280 189-357 (411)
292 COG1084 Predicted GTPase [Gene 99.3 4.2E-11 9.2E-16 123.6 15.0 115 88-218 167-294 (346)
293 PTZ00099 rab6; Provisional 99.3 1.8E-11 3.9E-16 119.6 11.9 128 137-282 14-145 (176)
294 KOG0070 GTP-binding ADP-ribosy 99.3 1.3E-11 2.9E-16 117.5 10.2 159 87-279 15-178 (181)
295 PRK09866 hypothetical protein; 99.3 4.8E-11 1E-15 133.4 16.0 115 152-278 230-352 (741)
296 KOG1489 Predicted GTP-binding 99.3 3.8E-11 8.1E-16 122.9 13.1 153 88-276 195-364 (366)
297 PF09439 SRPRB: Signal recogni 99.2 2.3E-11 5.1E-16 118.1 9.7 113 89-222 3-130 (181)
298 KOG0076 GTP-binding ADP-ribosy 99.2 1.4E-11 3E-16 115.5 7.7 169 86-280 14-188 (197)
299 KOG0052 Translation elongation 99.2 1.8E-11 4E-16 129.2 8.3 230 87-377 5-261 (391)
300 KOG0071 GTP-binding ADP-ribosy 99.2 2.5E-10 5.5E-15 103.2 12.8 156 89-278 17-177 (180)
301 PRK09435 membrane ATPase/prote 99.2 3.2E-10 7E-15 120.7 15.9 177 86-279 53-260 (332)
302 KOG1191 Mitochondrial GTPase [ 99.2 1.2E-10 2.6E-15 125.5 11.6 161 88-278 267-449 (531)
303 KOG4252 GTP-binding protein [S 99.2 1E-11 2.2E-16 116.4 2.5 158 87-276 18-178 (246)
304 cd01853 Toc34_like Toc34-like 99.2 1.5E-09 3.3E-14 111.7 18.7 118 85-217 27-162 (249)
305 COG1163 DRG Predicted GTPase [ 99.2 1.5E-10 3.3E-15 119.0 11.0 87 86-188 60-153 (365)
306 cd01899 Ygr210 Ygr210 subfamil 99.1 8.6E-10 1.9E-14 117.3 14.8 88 92-187 1-111 (318)
307 cd03693 EF1_alpha_II EF1_alpha 99.1 4.6E-10 1E-14 97.4 10.2 85 286-377 2-90 (91)
308 PF04670 Gtr1_RagA: Gtr1/RagA 99.1 1.1E-09 2.3E-14 111.2 13.8 163 91-279 1-176 (232)
309 cd03698 eRF3_II_like eRF3_II_l 99.1 5.1E-10 1.1E-14 95.4 9.6 79 288-374 1-83 (83)
310 PRK13768 GTPase; Provisional 99.1 5.6E-10 1.2E-14 115.5 11.7 119 152-280 97-248 (253)
311 KOG0090 Signal recognition par 99.1 5.2E-10 1.1E-14 108.7 9.4 120 88-226 37-167 (238)
312 TIGR00073 hypB hydrogenase acc 99.0 1.9E-09 4.2E-14 108.1 13.1 170 85-278 18-206 (207)
313 TIGR02836 spore_IV_A stage IV 99.0 1.9E-09 4.2E-14 115.1 13.0 175 87-280 15-238 (492)
314 PF03144 GTP_EFTU_D2: Elongati 99.0 2.4E-10 5.1E-15 95.1 4.8 71 303-373 1-74 (74)
315 COG4917 EutP Ethanolamine util 99.0 7.3E-10 1.6E-14 98.6 7.7 138 90-276 2-143 (148)
316 COG5192 BMS1 GTP-binding prote 99.0 9.4E-09 2E-13 111.3 17.6 143 88-254 68-211 (1077)
317 PF05049 IIGP: Interferon-indu 99.0 3.9E-09 8.4E-14 113.4 12.2 172 88-283 34-222 (376)
318 PRK09602 translation-associate 99.0 1.1E-08 2.3E-13 112.3 15.9 81 90-186 2-113 (396)
319 TIGR00750 lao LAO/AO transport 99.0 8.7E-09 1.9E-13 109.4 14.7 177 85-278 30-237 (300)
320 PF03308 ArgK: ArgK protein; 99.0 3.9E-09 8.5E-14 106.9 11.0 171 87-278 27-229 (266)
321 KOG0393 Ras-related small GTPa 98.9 9E-10 2E-14 107.7 6.0 161 89-280 4-180 (198)
322 smart00053 DYNc Dynamin, GTPas 98.9 7.6E-09 1.7E-13 105.5 13.0 132 88-219 25-207 (240)
323 KOG0072 GTP-binding ADP-ribosy 98.9 2.2E-09 4.8E-14 97.7 7.4 157 88-279 17-179 (182)
324 COG0536 Obg Predicted GTPase [ 98.9 1.1E-08 2.4E-13 106.4 13.1 160 89-281 159-335 (369)
325 cd04089 eRF3_II eRF3_II: domai 98.9 6.7E-09 1.5E-13 88.3 9.7 78 288-374 1-82 (82)
326 KOG1532 GTPase XAB1, interacts 98.9 1.5E-09 3.3E-14 108.9 6.2 183 86-278 16-263 (366)
327 cd03695 CysN_NodQ_II CysN_NodQ 98.9 1.1E-08 2.4E-13 86.7 9.4 79 289-374 1-81 (81)
328 COG1703 ArgK Putative periplas 98.9 2.6E-08 5.6E-13 102.2 13.4 207 54-279 15-254 (323)
329 KOG0077 Vesicle coat complex C 98.9 1.3E-08 2.9E-13 95.0 10.3 116 86-220 17-137 (193)
330 cd03694 GTPBP_II Domain II of 98.8 2E-08 4.2E-13 86.4 10.1 82 289-374 1-87 (87)
331 TIGR00991 3a0901s02IAP34 GTP-b 98.8 6.8E-08 1.5E-12 101.3 16.2 115 88-217 37-166 (313)
332 PF03029 ATP_bind_1: Conserved 98.8 8.1E-10 1.8E-14 113.0 1.3 115 153-277 92-235 (238)
333 KOG0074 GTP-binding ADP-ribosy 98.8 1.8E-08 4E-13 91.4 9.4 146 88-257 16-167 (185)
334 cd03696 selB_II selB_II: this 98.8 1.9E-08 4.1E-13 85.7 9.0 79 289-374 1-83 (83)
335 PF00735 Septin: Septin; Inte 98.8 1.1E-07 2.4E-12 99.6 16.7 123 89-218 4-156 (281)
336 cd03697 EFTU_II EFTU_II: Elong 98.8 2E-08 4.4E-13 86.3 9.1 82 289-375 1-86 (87)
337 KOG1673 Ras GTPases [General f 98.8 1.1E-08 2.5E-13 94.1 6.6 163 89-278 20-185 (205)
338 PF00350 Dynamin_N: Dynamin fa 98.8 3.5E-08 7.6E-13 95.1 10.5 64 151-214 100-168 (168)
339 KOG0096 GTPase Ran/TC4/GSP1 (n 98.8 1.8E-08 3.9E-13 96.1 8.0 145 88-256 9-156 (216)
340 cd01342 Translation_Factor_II_ 98.8 4.6E-08 9.9E-13 81.5 9.3 80 289-373 1-82 (83)
341 KOG3883 Ras family small GTPas 98.8 2.4E-07 5.2E-12 85.4 14.4 163 88-285 8-181 (198)
342 KOG2486 Predicted GTPase [Gene 98.7 4.1E-08 8.8E-13 99.3 10.0 153 87-255 134-302 (320)
343 KOG1707 Predicted Ras related/ 98.7 4E-08 8.6E-13 108.1 10.3 145 89-257 9-163 (625)
344 TIGR00101 ureG urease accessor 98.7 7.9E-08 1.7E-12 95.8 11.6 103 151-278 91-195 (199)
345 PRK10463 hydrogenase nickel in 98.7 9.9E-08 2.1E-12 99.4 11.8 171 84-277 99-287 (290)
346 KOG1490 GTP-binding protein CR 98.7 7.9E-08 1.7E-12 103.8 11.1 152 86-258 165-330 (620)
347 PRK09601 GTP-binding protein Y 98.6 4.3E-07 9.3E-12 97.7 14.6 82 90-187 3-108 (364)
348 PF04548 AIG1: AIG1 family; I 98.6 2E-07 4.3E-12 94.0 10.6 115 90-219 1-131 (212)
349 COG5019 CDC3 Septin family pro 98.5 1.1E-06 2.4E-11 92.7 13.7 125 87-219 21-177 (373)
350 COG0378 HypB Ni2+-binding GTPa 98.5 5.5E-07 1.2E-11 87.3 10.5 163 89-277 13-199 (202)
351 KOG2655 Septin family protein 98.5 2.9E-06 6.3E-11 90.2 16.4 124 88-219 20-173 (366)
352 KOG1954 Endocytosis/signaling 98.5 1.2E-06 2.5E-11 91.6 12.5 131 88-218 57-225 (532)
353 KOG3886 GTP-binding protein [S 98.5 2.6E-07 5.6E-12 91.0 7.3 117 89-220 4-132 (295)
354 KOG4423 GTP-binding protein-li 98.5 9.8E-09 2.1E-13 97.5 -3.6 160 86-278 22-193 (229)
355 cd01859 MJ1464 MJ1464. This f 98.4 4.3E-07 9.3E-12 86.7 7.3 96 165-280 2-97 (156)
356 TIGR00993 3a0901s04IAP86 chlor 98.4 5.8E-06 1.2E-10 93.7 15.5 116 88-218 117-250 (763)
357 cd03692 mtIF2_IVc mtIF2_IVc: t 98.4 3.8E-06 8.3E-11 71.7 10.4 78 291-372 3-82 (84)
358 PTZ00258 GTP-binding protein; 98.3 2.4E-06 5.2E-11 93.0 11.0 85 87-187 19-127 (390)
359 cd01900 YchF YchF subfamily. 98.3 1.3E-06 2.7E-11 91.1 8.1 80 92-187 1-104 (274)
360 KOG0448 Mitofusin 1 GTPase, in 98.3 5.3E-06 1.1E-10 93.2 13.4 164 88-253 108-310 (749)
361 KOG0410 Predicted GTP binding 98.3 2.8E-06 6E-11 87.7 10.2 149 86-279 175-341 (410)
362 KOG1547 Septin CDC10 and relat 98.3 9.8E-06 2.1E-10 80.4 13.0 126 85-218 42-198 (336)
363 cd01855 YqeH YqeH. YqeH is an 98.2 4.4E-06 9.5E-11 82.5 8.4 106 160-279 19-125 (190)
364 COG0012 Predicted GTPase, prob 98.1 2.8E-05 6E-10 82.8 13.3 89 90-187 3-109 (372)
365 KOG1486 GTP-binding protein DR 98.1 1.4E-05 3.1E-10 79.8 9.8 85 88-188 61-152 (364)
366 cd01856 YlqF YlqF. Proteins o 98.1 8.4E-06 1.8E-10 79.2 7.5 99 159-279 2-101 (171)
367 cd03688 eIF2_gamma_II eIF2_gam 98.1 2.1E-05 4.5E-10 69.5 9.1 76 285-364 2-95 (113)
368 PRK14722 flhF flagellar biosyn 98.1 1.4E-05 3E-10 86.6 9.6 129 89-217 137-294 (374)
369 cd01858 NGP_1 NGP-1. Autoanti 98.1 1E-05 2.2E-10 77.4 7.7 91 169-278 2-94 (157)
370 cd01857 HSR1_MMR1 HSR1/MMR1. 98.0 1.8E-05 3.8E-10 74.4 8.4 79 167-255 3-83 (141)
371 TIGR03596 GTPase_YlqF ribosome 98.0 1.6E-05 3.4E-10 83.5 8.4 99 160-280 5-104 (276)
372 PRK10416 signal recognition pa 98.0 0.00012 2.6E-09 78.2 14.5 152 88-257 113-298 (318)
373 cd03110 Fer4_NifH_child This p 98.0 7.7E-05 1.7E-09 72.8 12.0 66 150-217 91-156 (179)
374 TIGR00157 ribosome small subun 97.9 1.6E-05 3.4E-10 82.0 6.3 92 165-275 26-119 (245)
375 KOG3905 Dynein light intermedi 97.9 6.2E-05 1.4E-09 77.8 10.4 59 203-278 221-289 (473)
376 cd01858 NGP_1 NGP-1. Autoanti 97.9 1.9E-05 4.1E-10 75.5 6.5 56 89-162 102-157 (157)
377 PRK09563 rbgA GTPase YlqF; Rev 97.9 2.6E-05 5.6E-10 82.4 7.2 100 159-280 7-107 (287)
378 PF03193 DUF258: Protein of un 97.9 1E-05 2.2E-10 77.4 3.7 66 90-166 36-101 (161)
379 KOG1487 GTP-binding protein DR 97.9 2.5E-05 5.3E-10 78.5 6.4 82 90-187 60-148 (358)
380 cd04178 Nucleostemin_like Nucl 97.8 3E-05 6.4E-10 75.5 6.5 57 88-162 116-172 (172)
381 cd03115 SRP The signal recogni 97.8 0.00013 2.8E-09 70.9 11.0 123 92-218 3-153 (173)
382 cd01857 HSR1_MMR1 HSR1/MMR1. 97.8 2.4E-05 5.2E-10 73.4 5.6 54 91-162 85-138 (141)
383 cd03114 ArgK-like The function 97.8 0.0001 2.2E-09 70.0 9.5 59 150-215 90-148 (148)
384 TIGR01425 SRP54_euk signal rec 97.8 0.00013 2.9E-09 80.3 11.7 125 89-217 100-252 (429)
385 cd01849 YlqF_related_GTPase Yl 97.8 5.6E-05 1.2E-09 72.1 7.6 83 177-278 1-84 (155)
386 PF00448 SRP54: SRP54-type pro 97.7 7.5E-05 1.6E-09 74.3 7.0 124 90-217 2-153 (196)
387 cd01849 YlqF_related_GTPase Yl 97.7 6.3E-05 1.4E-09 71.7 6.3 57 88-162 99-155 (155)
388 cd01856 YlqF YlqF. Proteins o 97.7 7.9E-05 1.7E-09 72.3 6.9 57 88-162 114-170 (171)
389 cd01855 YqeH YqeH. YqeH is an 97.7 5.6E-05 1.2E-09 74.6 5.6 63 89-162 127-190 (190)
390 TIGR00064 ftsY signal recognit 97.7 0.00037 8E-09 72.9 11.8 147 88-255 71-254 (272)
391 cd01851 GBP Guanylate-binding 97.7 0.00014 3.1E-09 73.8 8.4 89 87-187 5-103 (224)
392 PRK12288 GTPase RsgA; Reviewed 97.6 6.1E-05 1.3E-09 81.4 5.9 65 91-166 207-271 (347)
393 smart00275 G_alpha G protein a 97.6 0.00019 4.2E-09 77.5 9.6 82 136-217 168-264 (342)
394 cd00066 G-alpha G protein alph 97.6 0.00021 4.5E-09 76.5 9.8 81 137-217 146-241 (317)
395 PRK12289 GTPase RsgA; Reviewed 97.6 0.00014 3E-09 78.7 8.0 84 172-275 86-171 (352)
396 PRK12727 flagellar biosynthesi 97.6 0.00074 1.6E-08 75.9 13.2 127 89-217 350-497 (559)
397 PRK14974 cell division protein 97.6 0.00045 9.8E-09 74.2 11.0 151 88-257 139-318 (336)
398 cd03112 CobW_like The function 97.6 0.00032 6.9E-09 67.3 8.9 122 91-216 2-158 (158)
399 PF05783 DLIC: Dynein light in 97.6 0.00044 9.5E-09 77.4 11.1 58 204-278 196-263 (472)
400 COG1162 Predicted GTPases [Gen 97.6 7.9E-05 1.7E-09 77.7 4.8 67 89-166 164-230 (301)
401 TIGR03597 GTPase_YqeH ribosome 97.5 7.8E-05 1.7E-09 81.2 4.8 63 90-165 155-217 (360)
402 TIGR03596 GTPase_YlqF ribosome 97.5 0.00024 5.3E-09 74.5 8.3 57 88-162 117-173 (276)
403 TIGR03597 GTPase_YqeH ribosome 97.5 0.00024 5.3E-09 77.4 8.4 100 162-277 50-151 (360)
404 PRK09563 rbgA GTPase YlqF; Rev 97.5 0.00019 4.2E-09 75.8 7.4 59 88-164 120-178 (287)
405 cd03702 IF2_mtIF2_II This fami 97.5 0.00057 1.2E-08 59.6 9.0 77 290-374 2-79 (95)
406 PRK00098 GTPase RsgA; Reviewed 97.5 0.0002 4.3E-09 76.0 7.5 84 172-274 77-162 (298)
407 TIGR00157 ribosome small subun 97.5 0.00013 2.7E-09 75.3 5.7 64 90-165 121-184 (245)
408 PRK12289 GTPase RsgA; Reviewed 97.4 0.00015 3.2E-09 78.5 5.4 65 91-166 174-238 (352)
409 cd01859 MJ1464 MJ1464. This f 97.4 0.00028 6E-09 67.2 6.4 58 87-162 99-156 (156)
410 PF14578 GTP_EFTU_D4: Elongati 97.4 0.0012 2.5E-08 55.5 9.2 75 288-373 4-80 (81)
411 cd02036 MinD Bacterial cell di 97.4 0.0012 2.6E-08 63.9 10.8 64 153-218 64-128 (179)
412 TIGR00092 GTP-binding protein 97.4 0.00052 1.1E-08 74.2 8.8 82 90-187 3-109 (368)
413 cd03703 aeIF5B_II aeIF5B_II: T 97.4 0.0011 2.4E-08 59.0 9.2 84 290-374 2-94 (110)
414 cd01854 YjeQ_engC YjeQ/EngC. 97.4 0.00024 5.1E-09 75.1 6.0 66 90-166 162-227 (287)
415 PRK11537 putative GTP-binding 97.4 0.00077 1.7E-08 72.1 9.9 143 88-237 3-178 (318)
416 cd01854 YjeQ_engC YjeQ/EngC. 97.4 0.00036 7.7E-09 73.7 7.3 84 171-274 74-159 (287)
417 PRK12288 GTPase RsgA; Reviewed 97.4 0.00055 1.2E-08 74.0 8.7 88 172-276 117-205 (347)
418 KOG0447 Dynamin-like GTP bindi 97.4 0.0019 4.1E-08 71.0 12.6 134 86-219 305-494 (980)
419 COG0523 Putative GTPases (G3E 97.4 0.0019 4.2E-08 69.0 12.5 150 90-251 2-184 (323)
420 COG1161 Predicted GTPases [Gen 97.3 0.0003 6.5E-09 75.4 6.0 56 89-162 132-187 (322)
421 PF09547 Spore_IV_A: Stage IV 97.3 0.00048 1E-08 74.4 6.9 174 88-280 16-238 (492)
422 PRK00771 signal recognition pa 97.3 0.0013 2.9E-08 73.0 10.5 123 88-217 94-245 (437)
423 cd02038 FleN-like FleN is a me 97.3 0.0017 3.7E-08 60.8 9.5 103 94-216 5-109 (139)
424 PRK01889 GTPase RsgA; Reviewed 97.3 0.00087 1.9E-08 72.9 8.6 82 173-274 110-192 (356)
425 COG3640 CooC CO dehydrogenase 97.2 0.00072 1.6E-08 67.7 7.1 62 152-216 134-197 (255)
426 cd03111 CpaE_like This protein 97.2 0.0029 6.2E-08 56.4 9.5 100 92-213 2-106 (106)
427 PRK05703 flhF flagellar biosyn 97.1 0.0036 7.7E-08 69.7 11.9 125 89-217 221-370 (424)
428 PRK13796 GTPase YqeH; Provisio 97.1 0.00067 1.5E-08 74.1 6.0 62 89-163 160-221 (365)
429 cd02042 ParA ParA and ParB of 97.1 0.0032 6.9E-08 55.5 9.0 82 92-198 2-84 (104)
430 PRK00098 GTPase RsgA; Reviewed 97.0 0.00094 2E-08 70.9 5.9 65 90-165 165-229 (298)
431 PRK12726 flagellar biosynthesi 97.0 0.0018 3.8E-08 70.1 7.9 25 88-112 205-229 (407)
432 PRK14721 flhF flagellar biosyn 97.0 0.0027 5.9E-08 70.1 9.6 128 88-217 190-339 (420)
433 PRK10867 signal recognition pa 97.0 0.0023 5E-08 71.1 8.8 123 89-216 100-252 (433)
434 TIGR00959 ffh signal recogniti 97.0 0.0033 7.1E-08 69.8 9.9 125 89-217 99-252 (428)
435 PRK11889 flhF flagellar biosyn 97.0 0.0041 8.9E-08 67.6 10.2 126 88-217 240-390 (436)
436 PF02492 cobW: CobW/HypB/UreG, 96.9 0.0015 3.4E-08 63.8 6.2 142 91-237 2-172 (178)
437 PRK13796 GTPase YqeH; Provisio 96.9 0.003 6.5E-08 69.0 9.1 100 163-278 57-158 (365)
438 smart00010 small_GTPase Small 96.9 0.0025 5.4E-08 57.4 6.7 24 91-114 2-25 (124)
439 KOG3887 Predicted small GTPase 96.8 0.0054 1.2E-07 61.4 9.0 116 90-220 28-151 (347)
440 PRK13695 putative NTPase; Prov 96.8 0.0028 6E-08 61.7 7.0 35 180-214 99-136 (174)
441 PRK12723 flagellar biosynthesi 96.8 0.0044 9.5E-08 67.9 9.1 128 88-217 173-325 (388)
442 cd03701 IF2_IF5B_II IF2_IF5B_I 96.8 0.0073 1.6E-07 52.8 8.7 76 290-373 2-78 (95)
443 TIGR02475 CobW cobalamin biosy 96.8 0.0075 1.6E-07 65.3 10.2 144 88-235 3-201 (341)
444 KOG1491 Predicted GTP-binding 96.7 0.0049 1.1E-07 64.8 8.0 84 88-187 19-126 (391)
445 PRK06995 flhF flagellar biosyn 96.7 0.0069 1.5E-07 68.0 9.7 127 89-217 256-404 (484)
446 PRK12724 flagellar biosynthesi 96.6 0.0072 1.6E-07 66.4 8.8 125 90-217 224-372 (432)
447 KOG1534 Putative transcription 96.6 0.0021 4.5E-08 63.1 4.1 68 152-219 98-179 (273)
448 TIGR00487 IF-2 translation ini 96.6 0.039 8.5E-07 63.9 15.2 104 267-374 468-576 (587)
449 KOG3859 Septins (P-loop GTPase 96.6 0.0026 5.6E-08 64.8 4.8 120 86-218 39-190 (406)
450 TIGR03348 VI_IcmF type VI secr 96.6 0.0047 1E-07 77.3 8.0 113 89-217 111-256 (1169)
451 PRK05306 infB translation init 96.5 0.057 1.2E-06 64.4 16.4 104 267-374 670-778 (787)
452 KOG4181 Uncharacterized conser 96.5 0.014 3.1E-07 61.3 9.9 28 87-114 186-213 (491)
453 KOG2485 Conserved ATP/GTP bind 96.5 0.0036 7.8E-08 65.2 5.5 67 86-162 140-206 (335)
454 cd01983 Fer4_NifH The Fer4_Nif 96.5 0.015 3.3E-07 49.5 8.7 77 92-196 2-79 (99)
455 PRK14723 flhF flagellar biosyn 96.5 0.0046 1E-07 72.6 6.8 126 90-217 186-336 (767)
456 cd02037 MRP-like MRP (Multiple 96.4 0.013 2.8E-07 56.6 8.5 66 150-217 66-134 (169)
457 PRK13849 putative crown gall t 96.4 0.012 2.6E-07 60.2 8.2 64 150-215 82-151 (231)
458 COG1419 FlhF Flagellar GTP-bin 96.3 0.0079 1.7E-07 65.3 7.0 154 88-257 202-377 (407)
459 CHL00189 infB translation init 96.3 0.078 1.7E-06 62.7 15.6 103 267-374 625-732 (742)
460 KOG0082 G-protein alpha subuni 96.3 0.013 2.8E-07 62.8 8.3 82 136-217 179-275 (354)
461 KOG2743 Cobalamin synthesis pr 96.3 0.016 3.4E-07 60.0 8.4 140 85-234 53-238 (391)
462 COG1162 Predicted GTPases [Gen 96.3 0.012 2.6E-07 61.6 7.8 81 176-274 80-162 (301)
463 PRK06731 flhF flagellar biosyn 96.3 0.028 6E-07 58.7 10.5 127 88-218 74-225 (270)
464 KOG1707 Predicted Ras related/ 96.2 0.056 1.2E-06 60.7 13.0 117 87-220 423-542 (625)
465 PRK08099 bifunctional DNA-bind 96.2 0.011 2.4E-07 65.2 7.3 30 86-115 216-245 (399)
466 KOG1424 Predicted GTP-binding 96.0 0.0052 1.1E-07 67.8 3.7 57 89-163 314-370 (562)
467 KOG0780 Signal recognition par 95.7 0.035 7.5E-07 59.5 8.3 124 89-217 101-253 (483)
468 COG1618 Predicted nucleotide k 95.7 0.12 2.6E-06 49.2 10.6 24 89-112 5-28 (179)
469 PF00503 G-alpha: G-protein al 95.7 0.013 2.9E-07 64.6 5.2 81 137-217 220-316 (389)
470 PF13671 AAA_33: AAA domain; P 95.5 0.034 7.3E-07 51.7 6.5 23 92-114 2-24 (143)
471 KOG1533 Predicted GTPase [Gene 95.5 0.008 1.7E-07 60.1 2.2 68 151-218 96-177 (290)
472 PF08433 KTI12: Chromatin asso 95.4 0.078 1.7E-06 55.5 9.6 153 91-276 3-171 (270)
473 COG0541 Ffh Signal recognition 95.4 0.1 2.2E-06 57.1 10.4 125 88-217 99-252 (451)
474 PRK01889 GTPase RsgA; Reviewed 95.4 0.018 3.9E-07 62.7 4.8 25 90-114 196-220 (356)
475 cd04178 Nucleostemin_like Nucl 95.3 0.017 3.8E-07 56.2 4.1 42 177-218 1-44 (172)
476 cd02117 NifH_like This family 95.3 0.064 1.4E-06 53.8 8.4 67 149-216 114-187 (212)
477 PF05621 TniB: Bacterial TniB 95.2 0.12 2.6E-06 54.4 9.9 29 85-113 57-85 (302)
478 TIGR03574 selen_PSTK L-seryl-t 95.1 0.062 1.3E-06 55.4 7.5 21 92-112 2-22 (249)
479 PRK10751 molybdopterin-guanine 95.0 0.048 1E-06 53.0 6.1 25 88-112 5-29 (173)
480 PF03266 NTPase_1: NTPase; In 94.9 0.06 1.3E-06 52.2 6.4 23 91-113 1-23 (168)
481 PF06858 NOG1: Nucleolar GTP-b 94.8 0.056 1.2E-06 42.3 4.8 41 175-215 13-58 (58)
482 COG3523 IcmF Type VI protein s 94.8 0.041 9E-07 67.5 6.1 114 90-218 126-270 (1188)
483 smart00382 AAA ATPases associa 94.7 0.18 3.9E-06 45.3 8.9 26 90-115 3-28 (148)
484 COG0552 FtsY Signal recognitio 94.7 0.16 3.4E-06 53.9 9.4 124 88-216 138-296 (340)
485 COG0532 InfB Translation initi 94.7 0.15 3.1E-06 57.2 9.5 81 290-374 415-497 (509)
486 KOG2484 GTPase [General functi 94.6 0.029 6.2E-07 60.3 3.5 57 88-162 251-307 (435)
487 PRK13185 chlL protochlorophyll 94.5 0.15 3.2E-06 53.2 8.8 65 150-215 116-185 (270)
488 PF13555 AAA_29: P-loop contai 94.5 0.039 8.4E-07 44.1 3.3 22 91-112 25-46 (62)
489 COG0563 Adk Adenylate kinase a 94.3 0.038 8.3E-07 54.1 3.5 106 90-210 1-110 (178)
490 TIGR03420 DnaA_homol_Hda DnaA 94.0 0.13 2.9E-06 51.8 6.9 26 88-113 37-62 (226)
491 CHL00072 chlL photochlorophyll 94.0 0.23 4.9E-06 52.6 8.9 64 151-215 115-183 (290)
492 cd01120 RecA-like_NTPases RecA 93.9 0.34 7.4E-06 45.3 9.2 22 92-113 2-23 (165)
493 cd02040 NifH NifH gene encodes 93.9 0.18 3.8E-06 52.4 7.9 37 151-187 116-153 (270)
494 COG3845 ABC-type uncharacteriz 93.9 1.5 3.2E-05 49.0 14.9 22 92-113 33-54 (501)
495 COG1149 MinD superfamily P-loo 93.9 0.14 2.9E-06 52.8 6.5 61 153-216 165-226 (284)
496 cd03116 MobB Molybdenum is an 93.9 0.17 3.7E-06 48.6 6.9 23 90-112 2-24 (159)
497 KOG2484 GTPase [General functi 93.8 0.19 4.1E-06 54.3 7.8 75 157-234 127-204 (435)
498 PF13207 AAA_17: AAA domain; P 93.8 0.058 1.3E-06 48.6 3.5 23 91-113 1-23 (121)
499 COG1763 MobB Molybdopterin-gua 93.7 0.21 4.6E-06 47.9 7.2 23 90-112 3-25 (161)
500 cd00009 AAA The AAA+ (ATPases 93.6 0.22 4.8E-06 45.3 7.0 26 88-113 18-43 (151)
No 1
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=6.1e-176 Score=1362.69 Aligned_cols=593 Identities=53% Similarity=0.899 Sum_probs=585.2
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
..+||||||+|+|||||||++.||++++.+...+.+..++||++++|+||||||.++++.+.|++++|||+|||||+||.
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFG 82 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFG 82 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCcc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceE
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQA 246 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pv 246 (681)
+|+++.++|+|+|||+|||.+|+++||+++++++.+.|++.|||+||+|++.++++++++++.++|.+++++++|++||+
T Consensus 83 GEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPi 162 (603)
T COG1217 83 GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPI 162 (603)
T ss_pred chhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccC
Q 005713 247 IYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTS 326 (681)
Q Consensus 247 i~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~ 326 (681)
+|.||+.|++..++.+...++.+||+.|++++|+|..+.++||+++|+.++|++|+|+|.+|||++|++|+||.|.+...
T Consensus 163 vYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q~V~~i~~ 242 (603)
T COG1217 163 VYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQQVALIKS 242 (603)
T ss_pred EEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCCeEEEEcC
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeEEEeEEEeeccceeecceecCCCEEEEecccccccCCeeeccCCCCCCCCCccCCCeeeEEEeecCCCCCccc
Q 005713 327 EDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGRE 406 (681)
Q Consensus 327 ~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~~~~g~~ 406 (681)
++.....||.+++.|.|.++.++++|.|||||+|+|++++.+|||||+++++++||.+.+++||++|.|.+|+|||+|++
T Consensus 243 ~g~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~~igdTi~d~~~~~aLp~l~iDePTlsMtf~vN~SPfAG~E 322 (603)
T COG1217 243 DGTTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTICDPDNPEALPALSVDEPTLSMTFSVNDSPFAGKE 322 (603)
T ss_pred CCcEEeeEEEeeeeccceeeeecccccccCEEEEcCcccccccccccCCCCccCCCCcccCCCceEEEEEecCCCCCCcC
Confidence 98888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHHhhhhhcceEEEEcCCeeEEEeeCCeecCcEEE
Q 005713 407 GKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENMRREGYEFMVGPPKVINKKVNDKLLEPYEI 486 (681)
Q Consensus 407 ~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~e~lrreg~e~~~~~P~Vi~~~~~g~llEP~~~ 486 (681)
||+||++++++||.+|++.||+|+|+++++.+.|.|+|||||||+||+|+|||||||++||+|+|+||+.||+++|||+.
T Consensus 323 Gk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsILiE~MRREGfEl~VsrP~Vi~keidG~~~EP~E~ 402 (603)
T COG1217 323 GKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSILIENMRREGFELQVSRPEVIIKEIDGVKCEPFEE 402 (603)
T ss_pred CceeeHHHHHHHHHHHhhhceeEEEeecCCCCeEEEeccceeehHHHHHHhhhcceEEEecCceEEEEecCCcCcCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceeecCCCCCC
Q 005713 487 ATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWAGDIST 566 (681)
Q Consensus 487 ~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~g~~~~ 566 (681)
++|+||++|+|.||+.|+.|||+|.+|.+. ++||++++|.+|+|+|+||+++|+++|+|+|++++.|++|+|+.|++..
T Consensus 403 v~iDv~ee~~G~Vie~lg~RKgem~~M~~~-g~G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~F~~Y~p~~g~i~~ 481 (603)
T COG1217 403 VTIDVPEEHQGAVIEKLGERKGEMKDMAPD-GKGRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHSFDHYRPVKGEIGG 481 (603)
T ss_pred EEecCchhhhhHHHHHHhhhhHhHhhcccC-CCCeEEEEEEccCcceeccchheeeccccceeeeecccccccccccccc
Confidence 999999999999999999999999999997 5689999999999999999999999999999999999999999999999
Q ss_pred cccceEEeCCCccchHHhhhchhhhCCccccCCccccccceeeccCCCCCeeeeeeccccccccc-cCCCceeeecCCcc
Q 005713 567 RDQGSLVAFEDGTTTSYALSSSQERGQMFLGPGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNIR-SNKEQTVVLDTPLD 645 (681)
Q Consensus 567 ~~~g~~~~~~~g~~t~~~l~~~~~rG~~f~~~~~~vy~gm~vg~~~~~~d~~~n~~~~k~~~~~r-~~~~~~~~~~~~~~ 645 (681)
|.||+|||+++|++|+||||+|||||.|||.||++||+|||||||||+|||+|||||+||||||| ||+|++++|+||+.
T Consensus 482 R~nGvLiS~~~G~a~~yal~~lqdRG~~Fi~pG~~vYeGmiiG~hsR~nDL~VN~~k~K~LTN~Rasg~Dea~~L~~p~~ 561 (603)
T COG1217 482 RHNGVLISNETGKAVAYALFNLQDRGKLFIEPGTKVYEGMIIGEHSRDNDLTVNVLKGKKLTNMRASGKDEAVTLTPPIR 561 (603)
T ss_pred cccceEEEcCCCcchHhhhhhHHhcCceeecCCCceeeeeEEeeecCccCceeccccccccccccccCCccceEecCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cCHHHHHhhccCCeeEEecCCceEeeeccccccCCC
Q 005713 646 YSLDDCIEYIQEDELVEVTPLSIRMCKNPKFAKRGR 681 (681)
Q Consensus 646 ~~~~~~~~~~~~de~~e~tp~~~r~~k~~~~~~~~~ 681 (681)
||||+|||||+|||||||||+||||||++ |+++.|
T Consensus 562 mtLE~Ale~i~dDElvEVTP~sIRlRK~~-L~~n~R 596 (603)
T COG1217 562 MTLERALEFIADDELVEVTPESIRLRKKI-LNENER 596 (603)
T ss_pred ccHHHHHhhcCCCceEEecchHeehhhhh-cChhhh
Confidence 99999999999999999999999999999 998765
No 2
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=1.3e-150 Score=1277.49 Aligned_cols=591 Identities=59% Similarity=0.961 Sum_probs=570.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
+|||+|+||+|||||||+++|++.++.+...+.+..++||++++|++||+|+.++...+.|++++++|||||||.||.++
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGE 80 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHH
Confidence 69999999999999999999999999888777777899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceEEE
Q 005713 169 VERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIY 248 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~ 248 (681)
+.++++++|++|||||+.+|++.||+++|..+...++|+|+|+||+|+.+++++++++++.++|..+++.++++.+|+++
T Consensus 81 v~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~ 160 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVY 160 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEe
Confidence 99999999999999999999999999999999999999999999999988888889999999998888777778899999
Q ss_pred eecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCC
Q 005713 249 ASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSED 328 (681)
Q Consensus 249 ~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~ 328 (681)
+||++|++..+.....+++.+||+.|++++|+|..+.++||+++|++++++++.|++++|||++|+|++||.|.+.+.++
T Consensus 161 ~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V~~~~~~~ 240 (594)
T TIGR01394 161 ASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQVALMKRDG 240 (594)
T ss_pred chhhcCcccccCcccccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEEEEecCCC
Confidence 99999998777666677999999999999999988889999999999999999999999999999999999999998865
Q ss_pred ceeeeEEEeEEEeeccceeecceecCCCEEEEecccccccCCeeeccCCCCCCCCCccCCCeeeEEEeecCCCCCcccCc
Q 005713 329 SCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGK 408 (681)
Q Consensus 329 ~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~~~~g~~~~ 408 (681)
+....+|++|+.+.|.++.++++|.|||||+|+|++++.+|||||+.+.+.+||++++++|+++|+|.+|++||+|+||+
T Consensus 241 ~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~p~~~~e~k 320 (594)
T TIGR01394 241 TIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINIGETIADPEVPEALPTITVDEPTLSMTFSVNDSPLAGKEGK 320 (594)
T ss_pred ceeEEEEEEEEEccCCCceECCEECCCCEEEEeCCcccCCCCEEeCCCccccCCCCCCCCCeEEEEEEecCCCcccccch
Confidence 44456999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHHhhhhhcceEEEEcCCeeEEEeeCCeecCcEEEEE
Q 005713 409 YVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENMRREGYEFMVGPPKVINKKVNDKLLEPYEIAT 488 (681)
Q Consensus 409 ~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~e~lrreg~e~~~~~P~Vi~~~~~g~llEP~~~~~ 488 (681)
++|+++|++||.||+++||+|+|++++++++|+|+|||+|||+|++|+|||||||+.+++|+|+|||.+|++||||++++
T Consensus 321 ~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrreg~e~~~~~P~V~yrei~g~llEPi~~~~ 400 (594)
T TIGR01394 321 KVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILIETMRREGFELQVGRPQVIYKEIDGKKLEPIEELT 400 (594)
T ss_pred hhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHHhccCceEEEeCCEEEEEeCCCeEECCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceeecCCCCCCcc
Q 005713 489 VEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWAGDISTRD 568 (681)
Q Consensus 489 i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~g~~~~~~ 568 (681)
|+||++|+|+||++|++|||+|++|++. ++||++|+|.+|+|+|+||+++|+|+|+|+|+|++.|+||+|++|+++.|.
T Consensus 401 i~vp~e~~G~v~~~l~~RrG~~~~~~~~-~~~~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~~i~~~~ 479 (594)
T TIGR01394 401 IDVPEEHVGAVIEKLGKRKGEMVDMEPS-GNGRTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFDEYEPWKGEIETRR 479 (594)
T ss_pred EEechHHHHHHHHHHHHhCCEEeccEEC-CCCEEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEEeccceeCCCcCCCCC
Confidence 9999999999999999999999999986 457999999999999999999999999999999999999999999999999
Q ss_pred cceEEeCCCccchHHhhhchhhhCCccccCCccccccceeeccCCCCCeeeeeeccccccccc-cCCCceeeecCCcccC
Q 005713 569 QGSLVAFEDGTTTSYALSSSQERGQMFLGPGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNIR-SNKEQTVVLDTPLDYS 647 (681)
Q Consensus 569 ~g~~~~~~~g~~t~~~l~~~~~rG~~f~~~~~~vy~gm~vg~~~~~~d~~~n~~~~k~~~~~r-~~~~~~~~~~~~~~~~ 647 (681)
||+|||+++|++|+|||++||+||.|||.||++||+|||||||+|+|||+|||||+||||||| ||+|++|+|+|||.||
T Consensus 480 ~g~~~~~~~g~~~~~~~~~~~~rg~~f~~~~~~vy~g~i~g~~~~~~d~~~n~~~~k~~~n~r~~~~~~~~~~~~~~~~~ 559 (594)
T TIGR01394 480 NGSLVSMEDGTATAYALWNLQERGVMFVSPGTEVYEGMIIGEHSRENDLDVNPCKAKKLTNVRSSGKDEAVKLTPPRKLS 559 (594)
T ss_pred ceeEEECCCCcChHhhhhchhhcccEEeCCCCceeCceEEEeecCcCCcEEecccccccccccccCCCcceeeCCCccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHhhccCCeeEEecCCceEeeeccccccCCC
Q 005713 648 LDDCIEYIQEDELVEVTPLSIRMCKNPKFAKRGR 681 (681)
Q Consensus 648 ~~~~~~~~~~de~~e~tp~~~r~~k~~~~~~~~~ 681 (681)
||+|||||+|||||||||++|||||++ |+++.|
T Consensus 560 le~~~~~~~~de~~evtp~~~r~rk~~-l~~~~r 592 (594)
T TIGR01394 560 LEQALEYIEDDELVEVTPKSIRLRKRV-LDPNER 592 (594)
T ss_pred HHHHHhhccCCeEEEECchHeEEehhh-CCHhhc
Confidence 999999999999999999999999999 998876
No 3
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=7.3e-148 Score=1252.52 Aligned_cols=593 Identities=48% Similarity=0.854 Sum_probs=568.1
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
+++|||+|+||+|||||||+++|++.++.+.......+++||++++|+++|+|+..+...+.|++++++|||||||.+|.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 46999999999999999999999998888776666667999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceE
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQA 246 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pv 246 (681)
.++.++++.+|++|+|||+.+|++.||+++|..+...++|.++|+||+|+..++++++++++.++|..++..+++.++|+
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PV 162 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPI 162 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999987776666778999
Q ss_pred EEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccC
Q 005713 247 IYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTS 326 (681)
Q Consensus 247 i~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~ 326 (681)
+++||++|++..+.+....++.+||+.|++++|+|..+.++||+++|+++++++|.|++++|||++|+|++||.|.+.+.
T Consensus 163 i~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd~v~~~~~ 242 (607)
T PRK10218 163 VYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQQVTIIDS 242 (607)
T ss_pred EEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCCEEEEecC
Confidence 99999999987766666678999999999999999888899999999999999999999999999999999999999887
Q ss_pred CCceeeeEEEeEEEeeccceeecceecCCCEEEEecccccccCCeeeccCCCCCCCCCccCCCeeeEEEeecCCCCCccc
Q 005713 327 EDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGRE 406 (681)
Q Consensus 327 ~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~~~~g~~ 406 (681)
++.....||++|+.+.|.++.++++|.|||||+++|++++.+|||||+.+.+.++|++++++|+++|+|.+|+|||+|++
T Consensus 243 ~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~~~~~l~~~~~~~P~~~~~~~~~~sp~~g~e 322 (607)
T PRK10218 243 EGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKE 322 (607)
T ss_pred CCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEECccccccCcEEecCCCcccCCCCCCCCCeEEEEEEeCCCccccch
Confidence 54433469999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred CccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHHhhhhhcceEEEEcCCeeEEEeeCCeecCcEEE
Q 005713 407 GKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENMRREGYEFMVGPPKVINKKVNDKLLEPYEI 486 (681)
Q Consensus 407 ~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~e~lrreg~e~~~~~P~Vi~~~~~g~llEP~~~ 486 (681)
||+++++++++||.+|+++||+|+|++++++++|+|+|+|+|||+|++|+|||||||+.+++|+|+|||.+|++||||++
T Consensus 323 ~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrreg~e~~~~~P~V~yret~g~klEPi~~ 402 (607)
T PRK10218 323 GKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREIDGRKQEPYEN 402 (607)
T ss_pred hhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHHHHHhCCceEEEeCCEEEEEEECCEEeCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceeecC-CCCC
Q 005713 487 ATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWA-GDIS 565 (681)
Q Consensus 487 ~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~-g~~~ 565 (681)
++|+||++|+|+||++|++|||+|++|++. ++++++|+|.+|+|+|+||+++|+|+|+|+|+|++.|+||+|++ |++.
T Consensus 403 v~i~vP~e~~G~V~~~l~~RrG~~~~m~~~-~~~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~~Y~~~~~g~~~ 481 (607)
T PRK10218 403 VTLDVEEQHQGSVMQALGERKGDLKNMNPD-GKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYSTFSHYDDVRPGEVG 481 (607)
T ss_pred EEEEechhhHHHHHHHHHhcCCEEeccEEC-CCCEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEEecCccCCCCCCCC
Confidence 999999999999999999999999999985 35799999999999999999999999999999999999999999 9999
Q ss_pred CcccceEEeCCCccchHHhhhchhhhCCccccCCccccccceeeccCCCCCeeeeeeccccccccc-cCCCceeeecCCc
Q 005713 566 TRDQGSLVAFEDGTTTSYALSSSQERGQMFLGPGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNIR-SNKEQTVVLDTPL 644 (681)
Q Consensus 566 ~~~~g~~~~~~~g~~t~~~l~~~~~rG~~f~~~~~~vy~gm~vg~~~~~~d~~~n~~~~k~~~~~r-~~~~~~~~~~~~~ 644 (681)
.|.||+|||+++|++|+|||++||+||.|||.||++||+|||||||+|+|||+|||||+||||||| +|+|++|+|+|||
T Consensus 482 ~~~~g~~~~~~~g~~~~~~l~~~~~rg~~f~~~~~~vy~gmivg~~~~~~d~~vn~~~~k~~tn~r~~~~~~~~~l~~~~ 561 (607)
T PRK10218 482 QRQNGVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVVLVPPI 561 (607)
T ss_pred CccceEEEECCCCcCHHHhhhhhhhccceeecCCCcEecceEEeeecCcCCceeccccccccccccccCCCcceeecCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccCHHHHHhhccCCeeEEecCCceEeeeccccccCCC
Q 005713 645 DYSLDDCIEYIQEDELVEVTPLSIRMCKNPKFAKRGR 681 (681)
Q Consensus 645 ~~~~~~~~~~~~~de~~e~tp~~~r~~k~~~~~~~~~ 681 (681)
.||||+|||||+|||||||||++|||||++ |+++.|
T Consensus 562 ~~~le~~~~~~~~de~~evtp~~~r~rk~~-l~~~~r 597 (607)
T PRK10218 562 RMTLEQALEFIDDDELVEVTPTSIRIRKRH-LTENDR 597 (607)
T ss_pred cCCHHHHHhhccCCeEEEECchHeEEeehh-CCHhHH
Confidence 999999999999999999999999999999 998765
No 4
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.3e-100 Score=806.83 Aligned_cols=559 Identities=35% Similarity=0.480 Sum_probs=512.2
Q ss_pred ccCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC---eEEEEEeCC
Q 005713 84 MRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND---TKINIIDTP 160 (681)
Q Consensus 84 ~~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~---~~i~iiDTP 160 (681)
.+.+++||++||+|+|||||||.++||..+|.+.. .....++||+.+.||||||||.+..+++.|++ +.+|+||||
T Consensus 55 ~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~-~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTP 133 (650)
T KOG0462|consen 55 DPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDN-NIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTP 133 (650)
T ss_pred CchhhccceEEEEEecCCcchHHHHHHHHhCCCCC-CCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCC
Confidence 34578999999999999999999999999996543 33457899999999999999999999999999 999999999
Q ss_pred CccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 161 GHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 161 Gh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
||.||++|+.+.+.+|||+||||||++|+++||...+.+|.+.|+.+|.|+||+|++.++++++.++++++|.....
T Consensus 134 GHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~--- 210 (650)
T KOG0462|consen 134 GHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPA--- 210 (650)
T ss_pred CcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCcc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998854332
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCE
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGME 320 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~ 320 (681)
+++++||++|+ ++..+|++|++++|+|....++||+|++|+.++|.|.|+|+++||..|.+++||.
T Consensus 211 ----~~i~vSAK~G~----------~v~~lL~AII~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~vrkGdk 276 (650)
T KOG0462|consen 211 ----EVIYVSAKTGL----------NVEELLEAIIRRVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGVVRKGDK 276 (650)
T ss_pred ----ceEEEEeccCc----------cHHHHHHHHHhhCCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeeeeecCCE
Confidence 59999999999 8899999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEec-ccccccCCeeeccCCCCCCCCCccCCCeeeEEEeecC
Q 005713 321 VRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCG-IDDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINT 399 (681)
Q Consensus 321 v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~g-l~~~~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~ 399 (681)
|..+.+++++ ..++-.|+.+..-...++....+|+||+..+ ++++.+||||++.....++|+++-.+|+.+|.| ++.
T Consensus 277 V~~~~t~~~y-ev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~~~~~v~tl~~~~~~~pMvF-vg~ 354 (650)
T KOG0462|consen 277 VQSAATGKSY-EVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKSVTKAVETLPGFEPTKPMVF-VGL 354 (650)
T ss_pred EEEeecCcce-EeEEeEEeccCceeeeeecccccceeEecccccccccccceeeecccCcccCcCCCCCCCcceEE-ecc
Confidence 9999998875 3466666666666667777788888888866 889999999999876667788888889999999 899
Q ss_pred CCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCC---CceEEecccchhhhhHHhhhhhc-ceEEEEcCCeeEEEe
Q 005713 400 SPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETA---DTFIVSGRGTLHITILIENMRRE-GYEFMVGPPKVINKK 475 (681)
Q Consensus 400 ~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~---~~~~v~g~Gelhl~il~e~lrre-g~e~~~~~P~Vi~~~ 475 (681)
.|+.|.| ...+++++.|+..+|.+..+....++ .+|+++|+|.||++|++|||+|| |+|+.+++|.|+||.
T Consensus 355 fP~dgsd-----~~~l~~a~erL~lnd~sv~v~~~~s~aLg~gwr~gflG~LHm~Vf~erle~Eyg~elivt~PtV~Yr~ 429 (650)
T KOG0462|consen 355 FPLDGSD-----YETLRDAIERLVLNDESVTVIKESSGALGQGWRLGFLGLLHMEVFIERLEREYGAELIVTPPTVPYRV 429 (650)
T ss_pred ccCccch-----hhhHHHHHHHHhcccccceeeecCCcccccceEeeccceeeHHHHHHHHHHhcCceeeecCCcceEEE
Confidence 9999987 45556666666777888887766543 58999999999999999999999 999999999999997
Q ss_pred eCC--------------------eecCcEEEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcc
Q 005713 476 VND--------------------KLLEPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLG 535 (681)
Q Consensus 476 ~~g--------------------~llEP~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~g 535 (681)
..+ ..||||+.++|.+|+||+|.||+.++.|||++.+|.+.+ +.++.|.|.+|+|||.|
T Consensus 430 ~~~~~~~~~i~np~~fp~~~~v~~~lEP~v~~tii~P~Ey~G~Vi~Lc~~rRgeq~dm~~i~-~nr~~lky~lPl~elv~ 508 (650)
T KOG0462|consen 430 VYSNGDEILISNPALFPDPSDVKEFLEPYVEATIITPDEYVGAVIELCSERRGEQKDMTYID-GNRVMLKYQLPLRELVG 508 (650)
T ss_pred EecCCceeeecChhhCCCcccchhhcCceEEEEEECcHHHHHHHHHHHHHhhhheecceecc-CCeEEEEEecChHHHHH
Confidence 322 359999999999999999999999999999999999984 45999999999999998
Q ss_pred -hHHHHhhcCcceEEEEeeecceeecCCCCCCcccceEEeCCCccchHHhhhchhhhCCccccCCccccccceeeccCCC
Q 005713 536 -LRNAILTASRGTAILNTIFDGYGPWAGDISTRDQGSLVAFEDGTTTSYALSSSQERGQMFLGPGVDVYKGQIVGIHQRP 614 (681)
Q Consensus 536 -y~~~l~s~T~G~g~~~~~f~~Y~~~~g~~~~~~~g~~~~~~~g~~t~~~l~~~~~rG~~f~~~~~~vy~gm~vg~~~~~ 614 (681)
|+..|+|.|+|+|+|+++|++|+ ++++....-+...++.++.+|.+++..+++||+.||.++-+.|++|++|.|.+.
T Consensus 509 df~~~lks~tsGyAs~dye~~gY~--~sdLvkldil~n~~~vd~l~tivh~~~a~~rGr~~v~klk~~ip~Q~~ev~iqa 586 (650)
T KOG0462|consen 509 DFFDRLKSLTSGYASFDYEDAGYQ--ASDLVKLDILLNGKMVDGLSTIVHLSKAESRGREFVQKLKDLIPRQIFEVHIQA 586 (650)
T ss_pred HHHHHHhccccceeEEeecccccc--cccceEEEeeccchhhhhHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhhhhhh
Confidence 99999999999999999999999 889999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeeeccccccccccCCCceeeecCCcccCHHHHHhhccCCeeEEecCCceEeeec
Q 005713 615 GDLSLNVCKKKAATNIRSNKEQTVVLDTPLDYSLDDCIEYIQEDELVEVTPLSIRMCKN 673 (681)
Q Consensus 615 ~d~~~n~~~~k~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~de~~e~tp~~~r~~k~ 673 (681)
-|..-|++|+|-. +..+|.+.+|.++..++++.+|+|..+|++.++||.+||++|.
T Consensus 587 ~igsk~iare~i~---a~rKdv~akl~ggdv~r~~klL~~q~egkk~mk~vgnI~ipke 642 (650)
T KOG0462|consen 587 CIGSKNIARETIS---AYRKDVLAKLYGGDVTRLKKLLKKQAEGKKRMKTVGNIRIPKE 642 (650)
T ss_pred hcccchhhHHHHH---HhccceeeEecCCchhhHHHHHHhhhcCceeeeccccEecCHH
Confidence 9999999999876 6789999999999999999999999999999999999999985
No 5
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.7e-83 Score=724.78 Aligned_cols=457 Identities=32% Similarity=0.511 Sum_probs=417.0
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCcccccccee--eeeeccchhhcccceeEEeeeeEEeeCC-eEEEEEeCCCc
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK--ERIMDSNDLERERGITILSKNTSITYND-TKINIIDTPGH 162 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~~~~-~~i~iiDTPGh 162 (681)
.+++|||+|+||.|||||||.++||..+|.+...+.+. +++||++++|++|||||.+..+++.|++ +.|||||||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 56899999999999999999999999999988766654 6799999999999999999999999996 99999999999
Q ss_pred cchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHh-------
Q 005713 163 SDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIEL------- 235 (681)
Q Consensus 163 ~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l------- 235 (681)
.||..+++++++.+|++|+|+||.+|+++||+.+|+++.++++|.++|+||||+..+++..+++++.+.|...
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v~~p 166 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPVQLP 166 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCceeeecc
Confidence 9999999999999999999999999999999999999999999999999999999999988888887755310
Q ss_pred -hcc-----------------c----------------------------------c-----------------------
Q 005713 236 -NAT-----------------D----------------------------------E----------------------- 240 (681)
Q Consensus 236 -~~~-----------------~----------------------------------~----------------------- 240 (681)
+.. . +
T Consensus 167 Ig~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i~~~ 246 (697)
T COG0480 167 IGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKALRKG 246 (697)
T ss_pred ccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHHHHh
Confidence 000 0 0
Q ss_pred ---cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCcc--------------------ccCCceEEEEEEee
Q 005713 241 ---QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI--------------------EKDGALQMLATNLE 297 (681)
Q Consensus 241 ---~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~--------------------~~~~p~~~~V~~~~ 297 (681)
...+|+++.||.++. +++.||+++++++|+|.. +.++||.++|||+.
T Consensus 247 ~~~~~~~pvl~gsa~kn~----------gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~a~vfKi~ 316 (697)
T COG0480 247 TIAGKIVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLSALVFKIM 316 (697)
T ss_pred hhccceeeEEeeecccCC----------cHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceEEEEEEeE
Confidence 002577888887776 899999999999999831 34799999999999
Q ss_pred ecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEecccccccCCeeeccCC
Q 005713 298 YDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVS 377 (681)
Q Consensus 298 ~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~ 377 (681)
++++.|+++++|||||+|++||.|++...+++. ||.+|+.+.|.++.+++++.||||+++.|++++.+|||+|+...
T Consensus 317 ~d~~~g~l~~~RvysGtl~~G~~v~n~~~~~~e---rv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~~tGdTl~~~~~ 393 (697)
T COG0480 317 TDPFVGKLTFVRVYSGTLKSGSEVLNSTKGKKE---RVGRLLLMHGNEREEVDEVPAGDIVALVGLKDATTGDTLCDENK 393 (697)
T ss_pred ecCCCCeEEEEEEeccEEcCCCEEEeCCCCccE---EEEEEEEccCCceeecccccCccEEEEEcccccccCCeeecCCC
Confidence 999999999999999999999999999888765 99999999999999999999999999999999999999998775
Q ss_pred CCCCCCCccCCCeeeEEEeecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHHhhh
Q 005713 378 GKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENM 457 (681)
Q Consensus 378 ~~~l~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~e~l 457 (681)
+..++.+.+++|++++++++.+ ..| .+||.++|.++.++||+++++.++++++.+++|+|||||+|++++|
T Consensus 394 ~v~~~~~~~pePVi~vavepk~----~~d-----~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmGELHLei~~drl 464 (697)
T COG0480 394 PVILESMEFPEPVISVAVEPKT----KAD-----QEKLSEALNKLAEEDPTFRVETDEETGETIISGMGELHLEIIVDRL 464 (697)
T ss_pred ccccccccCCCceEEEEEeECC----hhh-----HHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecchhhHHHHHHHH
Confidence 6778899999999999999986 344 6899999999999999999999999999999999999999999999
Q ss_pred hhc-ceEEEEcCCeeEEEee------------------------------------------------------------
Q 005713 458 RRE-GYEFMVGPPKVINKKV------------------------------------------------------------ 476 (681)
Q Consensus 458 rre-g~e~~~~~P~Vi~~~~------------------------------------------------------------ 476 (681)
+|+ |+|+.+++|+|+|||.
T Consensus 465 ~~~~~Vev~~~~PqV~YrETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~~~~~~f~~~i~~g~~P~~yi~~ve~G~ 544 (697)
T COG0480 465 KREFGVEVEVGKPQVAYRETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLEDGSGFEFVDKIVGGVVPKEYIPAVEKGF 544 (697)
T ss_pred HhhcCceEEecCCeeEEEEeecccccceeeeeeccCCCCcccEEEEEEEeCCCCcceEEEeecccCcCchhhhHHHHHHH
Confidence 987 9999999999999980
Q ss_pred ---------------------------------------------------CCeecCcEEEEEEEecCCChhhHHHHHhc
Q 005713 477 ---------------------------------------------------NDKLLEPYEIATVEVPEEHMGPVVELLGK 505 (681)
Q Consensus 477 ---------------------------------------------------~g~llEP~~~~~i~vp~~~~G~v~~~l~~ 505 (681)
.++||||||+|+|.+|++|+|+||++|++
T Consensus 545 ~~a~~~GpLag~pv~dvkv~L~dgs~h~vdss~~af~~a~~~a~~~a~~~a~P~lLEPi~~veI~~P~d~~G~V~~~l~~ 624 (697)
T COG0480 545 REALKSGPLAGYPVVDVKVTLLDGSYHEVDSSEMAFKIAASLAFKEAMLKAKPVLLEPIMKVEITTPEEYMGDVIGDLNS 624 (697)
T ss_pred HHHHhcCCCCCCceEeeEEEEEcCccccCCCCHHHHHHHHHHHHHHHHhhCCceEecceEEEEEEcchhhhchhHHhhhh
Confidence 12799999999999999999999999999
Q ss_pred cCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceeecCCCC
Q 005713 506 RRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWAGDI 564 (681)
Q Consensus 506 RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~g~~ 564 (681)
|||+|++|+..+++++..|++++|++||+||.++|||+|+|+|.|+++|+||+++|..+
T Consensus 625 rRG~I~~~~~~~~~~~~~i~A~vPl~Emfgya~dLRs~T~Gra~~~m~f~~y~~vp~~~ 683 (697)
T COG0480 625 RRGQILGMEQRPGGGLDVIKAEVPLAEMFGYATDLRSATQGRASFSMEFDHYEEVPSSV 683 (697)
T ss_pred cceEEeceeeccCCceEEEEEEechHHhccchhhhHhhcCCceeEEEEecccEeCCHHH
Confidence 99999999987445789999999999999999999999999999999999999999443
No 6
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.9e-81 Score=667.90 Aligned_cols=453 Identities=31% Similarity=0.491 Sum_probs=411.0
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCcccccccee--eeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK--ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d 164 (681)
+++|||+|++|.++|||||.+++++..+.+.....+. ...||++++||+|||||.+..+.+.|.++++||||||||.|
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 4799999999999999999999999988776554443 77999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHh---------
Q 005713 165 FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIEL--------- 235 (681)
Q Consensus 165 f~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l--------- 235 (681)
|.-|++++++..|++|+|+|+..|++.||..+|+++.++++|.|.++||||+.++++..+++++...+...
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiPig 196 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQIPIG 196 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchheeEcccc
Confidence 99999999999999999999999999999999999999999999999999999999888888876643200
Q ss_pred ---------------------------------------------------hccccc-----------------------
Q 005713 236 ---------------------------------------------------NATDEQ----------------------- 241 (681)
Q Consensus 236 ---------------------------------------------------~~~~~~----------------------- 241 (681)
...++.
T Consensus 197 ~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIRr~ 276 (721)
T KOG0465|consen 197 SESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAIRRA 276 (721)
T ss_pred ccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 000000
Q ss_pred ----CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCcc--------------------ccC-CceEEEEEEe
Q 005713 242 ----CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI--------------------EKD-GALQMLATNL 296 (681)
Q Consensus 242 ----~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~--------------------~~~-~p~~~~V~~~ 296 (681)
.-.||+++||+++. |+++|||++++|+|+|.. ..+ .||.++.||+
T Consensus 277 Ti~r~fvPVl~GSAlKNk----------GVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv~LAFKl 346 (721)
T KOG0465|consen 277 TIKRSFVPVLCGSALKNK----------GVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFVALAFKL 346 (721)
T ss_pred HhhcceeeEEechhhccc----------CcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCceeeeEEEe
Confidence 01699999999998 999999999999999941 122 3999999999
Q ss_pred eecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEecccccccCCeeecc-
Q 005713 297 EYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADK- 375 (681)
Q Consensus 297 ~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~- 375 (681)
..+++ |.+.|.|||+|+|++||.|++..+++++ ||..|..+.....++|+++.|||||++.|+ ++..|||+++.
T Consensus 347 e~g~f-GqLTyvRvYqG~L~kG~~iyN~rtgKKv---rv~RL~rmHa~~medV~~v~AG~I~alfGi-dcasGDTftd~~ 421 (721)
T KOG0465|consen 347 EEGRF-GQLTYVRVYQGTLSKGDTIYNVRTGKKV---RVGRLVRMHANDMEDVNEVLAGDICALFGI-DCASGDTFTDKQ 421 (721)
T ss_pred eecCc-cceEEEEEeeeeecCCcEEEecCCCcee---EhHHHhHhcccccchhhhhhccceeeeecc-ccccCceeccCc
Confidence 99999 9999999999999999999999999987 999999999999999999999999999999 89999999998
Q ss_pred CCCCCCCCCccCCCeeeEEEeecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHHh
Q 005713 376 VSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIE 455 (681)
Q Consensus 376 ~~~~~l~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~e 455 (681)
.....+..+.+|+|++++++.|++ .++ .+++.++|.+...|||+|++..+.+.++++++|||||||+|..|
T Consensus 422 ~~~~~m~si~vPePVis~aikP~~----k~d-----~~~fskaL~rf~~EDPtFrv~~d~E~kqTvIsGMGELHLEIy~e 492 (721)
T KOG0465|consen 422 NLALSMESIHIPEPVISVAIKPVN----KKD-----ADNFSKALNRFTKEDPTFRVSLDPEMKQTVISGMGELHLEIYVE 492 (721)
T ss_pred cccceeeeeecCCCeeEEEecccc----ccc-----HHHHHHHHHhhcccCCceEEEeccccccchhhccchhhHHHHHH
Confidence 555667889999999999999876 333 67899999999999999999999999999999999999999999
Q ss_pred hhhhc-ceEEEEcCCeeEEEee----------------------------------------------------------
Q 005713 456 NMRRE-GYEFMVGPPKVINKKV---------------------------------------------------------- 476 (681)
Q Consensus 456 ~lrre-g~e~~~~~P~Vi~~~~---------------------------------------------------------- 476 (681)
||+|| |.++.+++|+|.|||.
T Consensus 493 Rl~rEy~~~~~~Gkp~VayRETi~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~~~~eF~~~~~g~~~P~~f~pa~ 572 (721)
T KOG0465|consen 493 RLVREYKVDAELGKPQVAYRETITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPPGSNEKFEFSDEIVGGNVPKQFIPAV 572 (721)
T ss_pred HHHHHhCCccccCCceeeehhhcCCcccceeeeccccCCCccccceeeEEeecCCCCCceEEEEecccCCCCchhHHHHH
Confidence 99998 9999999999999980
Q ss_pred -------------------------------------------------------CCeecCcEEEEEEEecCCChhhHHH
Q 005713 477 -------------------------------------------------------NDKLLEPYEIATVEVPEEHMGPVVE 501 (681)
Q Consensus 477 -------------------------------------------------------~g~llEP~~~~~i~vp~~~~G~v~~ 501 (681)
...+|||||.|+|.+|+||+|.|++
T Consensus 573 ekg~~e~~~~G~L~ghpl~~~r~~l~Dga~h~vds~elaf~~at~~a~r~a~~~a~p~iLEPIM~Vevt~P~EfqG~Vi~ 652 (721)
T KOG0465|consen 573 EKGFEEIVAKGPLIGHPLSNLRIVLQDGAHHPVDSSELAFMKATRNAFREAFKRAPPRILEPIMNVEVTTPEEFQGTVIG 652 (721)
T ss_pred HHHHHHHHhcCCccCCcccceEEEEecCCcCcccccHHHHHHHHHHHHHHHHHhCCcceeecceeeEEecchhhhhhhhh
Confidence 0168999999999999999999999
Q ss_pred HHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceeecCCCCC
Q 005713 502 LLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWAGDIS 565 (681)
Q Consensus 502 ~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~g~~~ 565 (681)
+|++|+|.|.+.+. .+++..|.+++|+++|+||.++|||+|+|+|.|+|+|++|+||+.+.+
T Consensus 653 ~L~kR~a~I~~~d~--~~~~~ti~A~VPL~~mfgYss~LRslTqGkgeftMEys~y~p~~~~vq 714 (721)
T KOG0465|consen 653 DLNKRKAQITGIDS--SEDYKTIKAEVPLNEMFGYSSELRSLTQGKGEFTMEYSRYSPVPPDVQ 714 (721)
T ss_pred hhhhcccEEecccC--CCceEEEEecccHHHHhhhhhhhhhhhcCcceEEEeecccCCCchHHH
Confidence 99999999999986 457999999999999999999999999999999999999999997764
No 7
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=3.5e-78 Score=687.95 Aligned_cols=445 Identities=31% Similarity=0.499 Sum_probs=395.4
Q ss_pred ccCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC-----CeEEEEEe
Q 005713 84 MRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN-----DTKINIID 158 (681)
Q Consensus 84 ~~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-----~~~i~iiD 158 (681)
+..+++|||+|+||+|||||||+++|++.++.+.... ..++++|++++|++||+|+.+....+.|+ ++.++|||
T Consensus 2 ~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~-~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiD 80 (600)
T PRK05433 2 MDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSERE-MKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLID 80 (600)
T ss_pred CccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccc-cccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEE
Confidence 3456799999999999999999999999988766543 25789999999999999999999988885 68999999
Q ss_pred CCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcc
Q 005713 159 TPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT 238 (681)
Q Consensus 159 TPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~ 238 (681)
||||.+|..++.++++.+|++|||||+++|++.+|...|..+...++|+|+|+||+|+..++++.+.+++.+.+ +..
T Consensus 81 TPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~l---g~~ 157 (600)
T PRK05433 81 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVI---GID 157 (600)
T ss_pred CCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHh---CCC
Confidence 99999999999999999999999999999999999999999988999999999999997766555445544432 211
Q ss_pred cccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCC
Q 005713 239 DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKG 318 (681)
Q Consensus 239 ~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~g 318 (681)
...++++||++|. |+.+|+++|.+.+|+|..+.++||+++|++++++++.|++++|||++|+|++|
T Consensus 158 ----~~~vi~iSAktG~----------GI~~Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~Lk~G 223 (600)
T PRK05433 158 ----ASDAVLVSAKTGI----------GIEEVLEAIVERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGTLKKG 223 (600)
T ss_pred ----cceEEEEecCCCC----------CHHHHHHHHHHhCccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCEEecC
Confidence 1248999999999 99999999999999998888999999999999999999999999999999999
Q ss_pred CEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEe-c---ccccccCCeeeccCCC--CCCCCCccCCCeee
Q 005713 319 MEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC-G---IDDIQIGETIADKVSG--KPLPSIKVEEPTVK 392 (681)
Q Consensus 319 d~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~-g---l~~~~~Gdtl~~~~~~--~~l~~~~~~~P~~~ 392 (681)
|.|++.+++..+ +|.+|+.+.+ ++.+++++.||||+++. | ++++++||||++.+++ .++|+++.++|+++
T Consensus 224 d~i~~~~~~~~~---~V~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~v~ 299 (600)
T PRK05433 224 DKIKMMSTGKEY---EVDEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNPAEEPLPGFKEVKPMVF 299 (600)
T ss_pred CEEEEecCCceE---EEEEeeccCC-CceECcEEcCCCEEEEecccccccccCCCCEEECCCCccccCCCCCCCCCcEEE
Confidence 999999988765 8999986654 88999999999998884 4 5679999999988766 58999999999999
Q ss_pred EEEeecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCC---CceEEecccchhhhhHHhhhhhc-ceEEEEcC
Q 005713 393 MSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETA---DTFIVSGRGTLHITILIENMRRE-GYEFMVGP 468 (681)
Q Consensus 393 ~~~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~---~~~~v~g~Gelhl~il~e~lrre-g~e~~~~~ 468 (681)
+.+.|.+ +.+ .++|+++|.++.++|++|++++..+. .+|.++++|+|||+|++|+|+|| |+++.+++
T Consensus 300 ~~i~p~~----~~d-----~~kL~~aL~kL~~eD~sl~~~~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~~~~v~~~~ 370 (600)
T PRK05433 300 AGLYPVD----SDD-----YEDLRDALEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTA 370 (600)
T ss_pred EEEEECC----ccC-----HHHHHHHHHHHHHhCCeEEEEecCCcceecceEeecHHHHHHHHHHHHHHHhhCceEEEec
Confidence 9999875 333 58999999999999999999843221 34677779999999999999998 99999999
Q ss_pred CeeEEEe--eCC------------------eecCcEEEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEe
Q 005713 469 PKVINKK--VND------------------KLLEPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKI 528 (681)
Q Consensus 469 P~Vi~~~--~~g------------------~llEP~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~v 528 (681)
|+|+||+ .+| .+||||++++|.||++|+|+||++|++|||++++|++.+ +++.|+|++
T Consensus 371 P~V~Yreti~~g~~~~~~~p~~~pds~~~~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~~--~~~~i~~~~ 448 (600)
T PRK05433 371 PSVVYEVTLTDGEVIEVDNPSKLPDPGKIEEIEEPIVKATIIVPQEYVGAVMELCQEKRGVQKDMEYLG--NRVELTYEL 448 (600)
T ss_pred CEEEEEEEEeCCcEEEEECcccCCCccccceEECCEEEEEEEecHHHHHHHHHHHHHcCCEEeCcEecC--CeEEEEEEe
Confidence 9999999 244 899999999999999999999999999999999999863 589999999
Q ss_pred echhh-cchHHHHhhcCcceEEEEeeecceeecC
Q 005713 529 PTRGL-LGLRNAILTASRGTAILNTIFDGYGPWA 561 (681)
Q Consensus 529 P~~~l-~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 561 (681)
|++|| ++|.++|+|+|+|+|+|+++|+||++..
T Consensus 449 Pl~e~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~~ 482 (600)
T PRK05433 449 PLAEIVFDFFDRLKSVSRGYASLDYEFIGYRESD 482 (600)
T ss_pred chHHhhhhHHHHhHhhcCCEEEEEEEECCccccc
Confidence 99999 9999999999999999999999999874
No 8
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=5.7e-78 Score=685.60 Aligned_cols=474 Identities=30% Similarity=0.483 Sum_probs=403.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC--C---eEEEEEeCCCc
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--D---TKINIIDTPGH 162 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~---~~i~iiDTPGh 162 (681)
++|||+|+||+|||||||+++|+..++.+.... ..++++|+.++|++||+|+..+...+.|. + +.++|||||||
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~-~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~ 80 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISERE-MREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 80 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCcccc-ccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCc
Confidence 589999999999999999999999888765432 34789999999999999999999988874 3 78999999999
Q ss_pred cchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 163 SDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 163 ~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
.+|..++.++++.+|++|||+|+++|.+.++..+|..+...++|+++|+||+|+..++.+.+.+++.+.+ +..
T Consensus 81 ~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~l---g~~---- 153 (595)
T TIGR01393 81 VDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVI---GLD---- 153 (595)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHh---CCC----
Confidence 9999999999999999999999999999999999988888899999999999997665444444444332 211
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEE
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVR 322 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~ 322 (681)
..+++++||++|. |+..||+.|.+.+|+|..+.++||+++|++++++++.|++++|||++|+|++||.|.
T Consensus 154 ~~~vi~vSAktG~----------GI~~Lle~I~~~lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk~Gd~v~ 223 (595)
T TIGR01393 154 ASEAILASAKTGI----------GIEEILEAIVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIKPGDKIR 223 (595)
T ss_pred cceEEEeeccCCC----------CHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEecCCEEE
Confidence 1148999999999 999999999999999998889999999999999999999999999999999999999
Q ss_pred EccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEe-c---ccccccCCeeeccCCC--CCCCCCccCCCeeeEEEe
Q 005713 323 VCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC-G---IDDIQIGETIADKVSG--KPLPSIKVEEPTVKMSFS 396 (681)
Q Consensus 323 ~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~-g---l~~~~~Gdtl~~~~~~--~~l~~~~~~~P~~~~~~~ 396 (681)
+.+++... +|.+|+.+.+. ..+++++.||||+++. | ++++.+||||++.+++ .++|++++++|++++.+.
T Consensus 224 ~~~~~~~~---~v~~i~~~~~~-~~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~v~~~i~ 299 (595)
T TIGR01393 224 FMSTGKEY---EVDEVGVFTPK-LTKTDELSAGEVGYIIAGIKDVSDVRVGDTITHVKNPAKEPLPGFKEVKPMVFAGLY 299 (595)
T ss_pred EecCCCee---EEeEEEEecCC-ceECCEEcCCCEEEEeccccccCccCCCCEEECCCCccccCCCCCcCCCcEEEEEEE
Confidence 99988765 89999877654 4899999999998884 4 5679999999988766 489999999999999999
Q ss_pred ecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCC---CceEEecccchhhhhHHhhhhhc-ceEEEEcCCeeE
Q 005713 397 INTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETA---DTFIVSGRGTLHITILIENMRRE-GYEFMVGPPKVI 472 (681)
Q Consensus 397 ~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~---~~~~v~g~Gelhl~il~e~lrre-g~e~~~~~P~Vi 472 (681)
|.+ +.+ .++|+++|.++.++||+|.+++..+. .+|+++|+|+|||+|++|+|+|| |+|+.+++|+|+
T Consensus 300 p~~----~~d-----~~kL~~aL~kL~~eD~sl~~~~e~~~~l~~g~r~g~lG~lHlei~~erL~re~~~~v~~~~P~V~ 370 (595)
T TIGR01393 300 PID----TED-----YEDLRDALEKLKLNDASLTYEPESSPALGFGFRCGFLGLLHMEIIQERLEREFNLDLITTAPSVI 370 (595)
T ss_pred ECC----ccc-----HHHHHHHHHHHhccCCeEEEEecCCcccccccEEeeeeHHHHHHHHHHHHHHhCCeeEEecCEEE
Confidence 875 333 68999999999999999999974321 36888899999999999999998 999999999999
Q ss_pred EEee--CCe------------------ecCcEEEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechh
Q 005713 473 NKKV--NDK------------------LLEPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRG 532 (681)
Q Consensus 473 ~~~~--~g~------------------llEP~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~ 532 (681)
||+. +|. +||||++++|.||++|+|+||++|++|||++++|++. +++++.|+|++|++|
T Consensus 371 Yreti~~g~~~~~~~p~~~p~~~~~~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~~~~~~~-~~~~~~i~~~~Plae 449 (595)
T TIGR01393 371 YRVYLTNGEVIEVDNPSDLPDPGKIEHVEEPYVKATIITPTEYLGPIMTLCQEKRGVQTNMEYL-DPNRVELIYEMPLAE 449 (595)
T ss_pred EEEEecCCcEEEEECcccCCCcccccceeCCeEEEEEEccHHHHHHHHHHHHHcCCEEeCcEEc-CCCeEEEEEEeccch
Confidence 9992 443 9999999999999999999999999999999999986 345899999999999
Q ss_pred h-cchHHHHhhcCcceEEEEeeecceeecC-CCCCCcccceEEeCCCccchHHhhhchhhhCCccc
Q 005713 533 L-LGLRNAILTASRGTAILNTIFDGYGPWA-GDISTRDQGSLVAFEDGTTTSYALSSSQERGQMFL 596 (681)
Q Consensus 533 l-~gy~~~l~s~T~G~g~~~~~f~~Y~~~~-g~~~~~~~g~~~~~~~g~~t~~~l~~~~~rG~~f~ 596 (681)
+ ++|.++|+|+|+|+|+|+++|+||++.. -.+..--||. .-|.-++--+-..++.+|+-++
T Consensus 450 ~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~~~~~~~~~~n~~---~~d~l~~~~~~~~~~~~~~~~~ 512 (595)
T TIGR01393 450 IVYDFFDKLKSISRGYASFDYELIGYRPSDLVKLDILINGE---PVDALSFIVHRDKAYSRGREIC 512 (595)
T ss_pred hhhchhHHhhhhcCCEEEEEEEECCccccceEEEEEEECCc---ccceeEEeeeHHHHHHHHHHHH
Confidence 6 9999999999999999999999999863 1222233332 1122233334455666665443
No 9
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=4.8e-77 Score=693.29 Aligned_cols=457 Identities=31% Similarity=0.459 Sum_probs=408.0
Q ss_pred cCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccce--eeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCc
Q 005713 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTV--KERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (681)
Q Consensus 85 ~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~--~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh 162 (681)
..+++|||+|+||+|+|||||+++|++.++.....+.+ .++++|+.+.|++||+|+++....+.|+++.++|+|||||
T Consensus 6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~ 85 (693)
T PRK00007 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGH 85 (693)
T ss_pred cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCc
Confidence 35679999999999999999999999988876544333 2689999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhh------
Q 005713 163 SDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN------ 236 (681)
Q Consensus 163 ~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~------ 236 (681)
.+|..++.++++.+|++|+|+|+.+|++.||+.+|..+.+.++|.|+|+||+|+.++++.++++++++.+....
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ip 165 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQLP 165 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEEec
Confidence 99999999999999999999999999999999999999999999999999999987776666666554332100
Q ss_pred -------------------------------------------------------ccc----------------------
Q 005713 237 -------------------------------------------------------ATD---------------------- 239 (681)
Q Consensus 237 -------------------------------------------------------~~~---------------------- 239 (681)
..+
T Consensus 166 isa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~l~~~l 245 (693)
T PRK00007 166 IGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEEIKAAL 245 (693)
T ss_pred CccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHHHHHHH
Confidence 000
Q ss_pred -----ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCcc--------------------ccCCceEEEEE
Q 005713 240 -----EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI--------------------EKDGALQMLAT 294 (681)
Q Consensus 240 -----~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~--------------------~~~~p~~~~V~ 294 (681)
...-+|++++||+++. |+..||+.|++++|+|.. ++++||.++||
T Consensus 246 ~~~~~~~~~~Pv~~gSa~~~~----------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~Vf 315 (693)
T PRK00007 246 RKATIANEIVPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASDDEPFSALAF 315 (693)
T ss_pred HHHHhcCcEEEEEecccccCc----------CHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCCCCCeEEEEE
Confidence 0023789999999988 999999999999999852 34679999999
Q ss_pred EeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEecccccccCCeeec
Q 005713 295 NLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIAD 374 (681)
Q Consensus 295 ~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~ 374 (681)
|+.++++.|+++++||+||+|++||.|++...++.+ +|.+|+.+.|.++.++++|.|||||++.|++++.+||||++
T Consensus 316 K~~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~~~e---ki~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdtL~~ 392 (693)
T PRK00007 316 KIMTDPFVGKLTFFRVYSGVLESGSYVLNSTKGKKE---RIGRILQMHANKREEIKEVRAGDIAAAVGLKDTTTGDTLCD 392 (693)
T ss_pred EeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCCcee---EeceeEEeccCCcccccccCCCcEEEEeCCccCCcCCEeeC
Confidence 999999999999999999999999999987666554 99999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCccCCCeeeEEEeecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHH
Q 005713 375 KVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILI 454 (681)
Q Consensus 375 ~~~~~~l~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~ 454 (681)
.+.+..++++.+++|++++++++.+. .+ ..+|.++|.++.++||+|+|..++++++++++|+|||||+|++
T Consensus 393 ~~~~~~l~~~~~~~Pv~~~aIep~~~----~d-----~~kL~~aL~~L~~eDpsl~v~~~~etge~~l~g~GelHLei~~ 463 (693)
T PRK00007 393 EKNPIILESMEFPEPVISVAVEPKTK----AD-----QEKMGIALQKLAEEDPSFRVSTDEETGQTIIAGMGELHLDIIV 463 (693)
T ss_pred CCCccccCCCCCCCceEEEEEEECCc----cc-----HHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHhHHHHH
Confidence 77666788888899999999998862 33 5899999999999999999999988999999999999999999
Q ss_pred hhhhhc-ceEEEEcCCeeEEEee---------------------------------------------------------
Q 005713 455 ENMRRE-GYEFMVGPPKVINKKV--------------------------------------------------------- 476 (681)
Q Consensus 455 e~lrre-g~e~~~~~P~Vi~~~~--------------------------------------------------------- 476 (681)
++|+++ |+|+.+++|+|+|||.
T Consensus 464 ~rL~~~~~vev~~s~p~V~yrETi~~~~~~~~~~~~~~gg~~~~~~v~l~~eP~~~~~~~~f~~~i~~g~~~~~~~~av~ 543 (693)
T PRK00007 464 DRMKREFKVEANVGKPQVAYRETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNEPGKGYEFVNKIVGGVIPKEYIPAVD 543 (693)
T ss_pred HHHHHHhCCeeEecCCEEEEeecccCccccCcccccccCCCCceEEEEEEEEeCCCCCCcEEeecccCCcCcHHHHHHHH
Confidence 999987 9999999999999980
Q ss_pred ------------------------------------------------------CCeecCcEEEEEEEecCCChhhHHHH
Q 005713 477 ------------------------------------------------------NDKLLEPYEIATVEVPEEHMGPVVEL 502 (681)
Q Consensus 477 ------------------------------------------------------~g~llEP~~~~~i~vp~~~~G~v~~~ 502 (681)
..+||||||+|+|.||++|+|+||++
T Consensus 544 ~G~~~a~~~GpL~g~pv~~v~v~l~d~~~~~~ds~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~ 623 (693)
T PRK00007 544 KGIQEAMESGVLAGYPVVDVKVTLFDGSYHDVDSSEMAFKIAGSMAFKEAAKKANPVLLEPIMKVEVVTPEEYMGDVIGD 623 (693)
T ss_pred HHHHHHHhcCCcCCCceeeEEEEEEecccCCCCCcHHHHHHHHHHHHHHHHHHCCCEEecCcEEEEEEechhhhhhHHHH
Confidence 01689999999999999999999999
Q ss_pred HhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceeecCCCCC
Q 005713 503 LGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWAGDIS 565 (681)
Q Consensus 503 l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~g~~~ 565 (681)
|++|||+|.++++. ++++.|+|.+|+++++||.++||++|+|+|+|++.|+||++++++..
T Consensus 624 L~~RRg~i~~~~~~--~~~~~i~a~vP~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~ 684 (693)
T PRK00007 624 LNSRRGQIEGMEDR--GGAKVIRAEVPLSEMFGYATDLRSMTQGRATYSMEFDHYEEVPKNVA 684 (693)
T ss_pred HHhCCCeEeccccc--CCcEEEEEEcCHHHhhccHHHHHhhcCCceEEEEEeceeeECCHHHH
Confidence 99999999999874 35799999999999999999999999999999999999999997653
No 10
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=1.5e-75 Score=681.66 Aligned_cols=457 Identities=30% Similarity=0.449 Sum_probs=408.6
Q ss_pred cCCCccEEEEEeCCCCcHHHHHHHHHhhcCcccccccee--eeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCc
Q 005713 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK--ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (681)
Q Consensus 85 ~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh 162 (681)
..+++|||+|+||+|+|||||+++|++.++.+...+.+. ++++|+.+.|++||+|+......+.|++++++|||||||
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~ 85 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGH 85 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCC
Confidence 356799999999999999999999999888765544333 589999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhh------
Q 005713 163 SDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN------ 236 (681)
Q Consensus 163 ~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~------ 236 (681)
.+|..++.++++.+|++|+|+|+.+|+..++..+|+.+...++|+++|+||+|+..+++..+++++.+.+....
T Consensus 86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ip 165 (689)
T TIGR00484 86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLP 165 (689)
T ss_pred cchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEec
Confidence 99999999999999999999999999999999999999999999999999999987776666666655432100
Q ss_pred ------------------------------------------------------c-cc----------------------
Q 005713 237 ------------------------------------------------------A-TD---------------------- 239 (681)
Q Consensus 237 ------------------------------------------------------~-~~---------------------- 239 (681)
. ++
T Consensus 166 is~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~l~~~l~ 245 (689)
T TIGR00484 166 IGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEEIKNAIR 245 (689)
T ss_pred cccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHH
Confidence 0 00
Q ss_pred ----ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCcc-------------------ccCCceEEEEEEe
Q 005713 240 ----EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI-------------------EKDGALQMLATNL 296 (681)
Q Consensus 240 ----~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~-------------------~~~~p~~~~V~~~ 296 (681)
...-+|++++||++|. |+.+||++|++++|+|.. ++++||.++|||+
T Consensus 246 ~~~~~~~~~PV~~gSa~~~~----------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~VfK~ 315 (689)
T TIGR00484 246 KGVLNCEFFPVLCGSAFKNK----------GVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDDEPFSALAFKV 315 (689)
T ss_pred HHHhcCCEEEEEeccccCCc----------cHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCCCceEEEEEEe
Confidence 0112789999999988 999999999999999852 3367999999999
Q ss_pred eecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEecccccccCCeeeccC
Q 005713 297 EYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKV 376 (681)
Q Consensus 297 ~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~ 376 (681)
.++++.|+++++||+||+|++||.|++...+.+. +|.+|+.+.|.++.++++|.|||||+|.|++++.+||||++.+
T Consensus 316 ~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~---~i~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~ 392 (689)
T TIGR00484 316 ATDPFVGQLTFVRVYSGVLKSGSYVKNSRKNKKE---RVGRLVKMHANNREEIKEVRAGDICAAIGLKDTTTGDTLCDPK 392 (689)
T ss_pred eecCCCCeEEEEEEEEeEEcCCCEEEeCCCCceE---EecceEEeecCCcccccccCCCCEEEEcCCCCCCCCCEEeCCC
Confidence 9999999999999999999999999987766554 8999999999999999999999999999999999999999877
Q ss_pred CCCCCCCCccCCCeeeEEEeecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHHhh
Q 005713 377 SGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIEN 456 (681)
Q Consensus 377 ~~~~l~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~e~ 456 (681)
.+..++++.+++|++++++++++. .+ ..+|.++|.++.++||+|+|..++++++++++|+|||||+|++++
T Consensus 393 ~~~~~~~~~~~~Pvl~~~i~p~~~----~d-----~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~~ 463 (689)
T TIGR00484 393 IDVILERMEFPEPVISLAVEPKTK----AD-----QEKMGIALGKLAEEDPTFRTFTDPETGQTIIAGMGELHLDIIVDR 463 (689)
T ss_pred CccccCCCCCCCceEEEEEEECCc----cc-----HHHHHHHHHHHHHhCCEEEEEECCCCCCEEEEEeeHHHHHHHHHH
Confidence 667778888899999999999863 33 689999999999999999999998999999999999999999999
Q ss_pred hhhc-ceEEEEcCCeeEEEee-----------------------------------------------------------
Q 005713 457 MRRE-GYEFMVGPPKVINKKV----------------------------------------------------------- 476 (681)
Q Consensus 457 lrre-g~e~~~~~P~Vi~~~~----------------------------------------------------------- 476 (681)
|+++ |+|+.+++|+|+|||.
T Consensus 464 L~~~~~vev~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~eP~~~~g~~~~~~i~~g~~~~~~~~av~~g~ 543 (689)
T TIGR00484 464 MKREFKVEANVGAPQVAYRETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLEPKGYEFVNEIKGGVIPREYIPAVDKGL 543 (689)
T ss_pred HHHHhCCeeEecCCEEEEeecccCccccccccccccCCCCceEEEEEEEEECCCCCcEEEEeccCCcCCHHHHHHHHHHH
Confidence 9987 9999999999999981
Q ss_pred ---------------------------------------------------CCeecCcEEEEEEEecCCChhhHHHHHhc
Q 005713 477 ---------------------------------------------------NDKLLEPYEIATVEVPEEHMGPVVELLGK 505 (681)
Q Consensus 477 ---------------------------------------------------~g~llEP~~~~~i~vp~~~~G~v~~~l~~ 505 (681)
..+||||||+|+|.||++|+|+|+++|++
T Consensus 544 ~~a~~~GpL~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~L~~ 623 (689)
T TIGR00484 544 QEAMESGPLAGYPVVDIKATLFDGSYHDVDSSEMAFKLAASLAFKEAGKKANPVLLEPIMKVEVEVPEEYMGDVMGDLSS 623 (689)
T ss_pred HHHHhcCCcCCCceeeEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecCcEEEEEEecHHHhHhHHHHHHh
Confidence 01589999999999999999999999999
Q ss_pred cCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceeecCCCCC
Q 005713 506 RRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWAGDIS 565 (681)
Q Consensus 506 RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~g~~~ 565 (681)
|||+|.+++.. +++.+|+|.+|+++++||.++||++|+|+|+|++.|+||++++++..
T Consensus 624 rrg~i~~~~~~--~~~~~I~a~vP~~e~~g~~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~ 681 (689)
T TIGR00484 624 RRGIIEGMEAR--GNVQKIKAEVPLSEMFGYATDLRSFTQGRGTYSMEFLHYGEVPSSVA 681 (689)
T ss_pred cCCeEeccccc--CCcEEEEEEeCHHHHhChHHHHHHhcCCceEEEEEeccceeCCHHHH
Confidence 99999999874 35899999999999999999999999999999999999999997653
No 11
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=1.9e-75 Score=680.28 Aligned_cols=457 Identities=32% Similarity=0.469 Sum_probs=409.0
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccce--eeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCcc
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTV--KERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS 163 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~--~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~ 163 (681)
.+++|||+|+||+|+|||||+++|++.++.....+.+ .++++|+++.|++||+|+++....+.|++++++|||||||.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 4579999999999999999999999988766544333 26899999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhh-------
Q 005713 164 DFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN------- 236 (681)
Q Consensus 164 df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~------- 236 (681)
+|..++.++++.+|++|+|||+.+|+..||+.+|..+...++|.|+++||+|+..+++..+++++++.+....
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~~~~~~~iPi 164 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGANAVPIQLPI 164 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEecc
Confidence 9999999999999999999999999999999999999999999999999999987766666666655442100
Q ss_pred ---------------------c---------------------------------ccc----------------------
Q 005713 237 ---------------------A---------------------------------TDE---------------------- 240 (681)
Q Consensus 237 ---------------------~---------------------------------~~~---------------------- 240 (681)
. .++
T Consensus 165 s~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~~~l~ 244 (691)
T PRK12739 165 GAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIKAAIR 244 (691)
T ss_pred cccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHHHHHH
Confidence 0 000
Q ss_pred -----cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCcc-------------------ccCCceEEEEEEe
Q 005713 241 -----QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI-------------------EKDGALQMLATNL 296 (681)
Q Consensus 241 -----~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~-------------------~~~~p~~~~V~~~ 296 (681)
..-+|++++||+++. |+..||+.|++++|+|.. ++++||.++|||+
T Consensus 245 ~~~~~~~~~Pv~~gSa~~~~----------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~ 314 (691)
T PRK12739 245 KATINMEFFPVLCGSAFKNK----------GVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEPFAALAFKI 314 (691)
T ss_pred HHHHcCCEEEEEeccccCCc----------cHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCCeEEEEEEe
Confidence 012689999999998 999999999999999842 4577999999999
Q ss_pred eecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEecccccccCCeeeccC
Q 005713 297 EYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKV 376 (681)
Q Consensus 297 ~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~ 376 (681)
.++++.|+++++||+||+|++||.|++...++++ +|.+|+.+.|.++.+++++.|||||+|.|++++.+||||++.+
T Consensus 315 ~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~~~~---~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~ 391 (691)
T PRK12739 315 MTDPFVGRLTFFRVYSGVLESGSYVLNTTKGKKE---RIGRLLQMHANKREEIKEVYAGDIAAAVGLKDTTTGDTLCDEK 391 (691)
T ss_pred eeCCCCCeEEEEEEeeeEEcCCCEEEeCCCCceE---EecceEEEecCCcccccccCCCCEEEEeCCCcccCCCEEeCCC
Confidence 9999999999999999999999999988776655 8999999999999999999999999999999999999999877
Q ss_pred CCCCCCCCccCCCeeeEEEeecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHHhh
Q 005713 377 SGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIEN 456 (681)
Q Consensus 377 ~~~~l~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~e~ 456 (681)
.+..++++.+++|++++++++.+ ..+ ..+|.++|.++.++||+|+|..++++++++++|+|||||++++++
T Consensus 392 ~~~~l~~~~~~~Pv~~~aiep~~----~~d-----~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g~GelHLei~~~r 462 (691)
T PRK12739 392 APIILESMEFPEPVISLAVEPKT----KAD-----QDKMGLALQKLAEEDPTFRVETDEETGQTIISGMGELHLDIIVDR 462 (691)
T ss_pred CccccCCCCCCCceEEEEEEECC----ccc-----HHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEEecHHHHHHHHHH
Confidence 66678888899999999999876 234 689999999999999999999999999999999999999999999
Q ss_pred hhhc-ceEEEEcCCeeEEEee-----------------------------------------------------------
Q 005713 457 MRRE-GYEFMVGPPKVINKKV----------------------------------------------------------- 476 (681)
Q Consensus 457 lrre-g~e~~~~~P~Vi~~~~----------------------------------------------------------- 476 (681)
|+++ |+++.+++|+|+|||.
T Consensus 463 L~~~f~vev~~s~p~V~yrEti~~~~~~~~~~~~~s~g~~~~~~v~l~~~P~~~~~~~~~~~~i~~g~~~~~~~~av~~G 542 (691)
T PRK12739 463 MKREFKVEANVGAPQVAYRETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEEGKGFEFVNKIVGGVIPKEYIPAVEKG 542 (691)
T ss_pred HHHHhCCeeEecCCEEEEeeccCCcccccceeccccCCCCceeEEEEEEEECCCCCCcEEEEeccCCcCcHHHHHHHHHH
Confidence 9986 9999999999999980
Q ss_pred ----------------------------------------------------CCeecCcEEEEEEEecCCChhhHHHHHh
Q 005713 477 ----------------------------------------------------NDKLLEPYEIATVEVPEEHMGPVVELLG 504 (681)
Q Consensus 477 ----------------------------------------------------~g~llEP~~~~~i~vp~~~~G~v~~~l~ 504 (681)
.++||||||+|+|.||++|+|+||++|+
T Consensus 543 ~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p~~~~g~v~~~L~ 622 (691)
T PRK12739 543 LEEAMKNGVLAGYPMVDVKATLYDGSYHDVDSSELAFKIAASMALKEAAKKAGPVILEPIMKVEVVTPEEYMGDVIGDLN 622 (691)
T ss_pred HHHHHhcCCcCCCceeeEEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEEchHhhhhHHHHHH
Confidence 0268999999999999999999999999
Q ss_pred ccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceeecCCCCCC
Q 005713 505 KRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWAGDIST 566 (681)
Q Consensus 505 ~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~g~~~~ 566 (681)
+|||+|++++..+ ++..|+|.+|+++++||.++||++|+|+|+|++.|+||++++++.+.
T Consensus 623 ~RRg~i~~~~~~~--~~~~i~a~vP~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~~~ 682 (691)
T PRK12739 623 RRRGQIQGMEARG--GAQIVKAFVPLSEMFGYATDLRSATQGRATFSMEFDHYEEVPKNIAE 682 (691)
T ss_pred hcCCeEECccccC--CcEEEEEEeCHHHhhccHHHHHhhccCceEEEEEeccceECCHHHHH
Confidence 9999999998752 57899999999999999999999999999999999999999976543
No 12
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=1.9e-74 Score=675.18 Aligned_cols=472 Identities=31% Similarity=0.517 Sum_probs=406.0
Q ss_pred HHhhhccCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEee----CCeEE
Q 005713 79 KKSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY----NDTKI 154 (681)
Q Consensus 79 ~~~~~~~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~----~~~~i 154 (681)
....+...+++|||+|+||+|||||||+++|++.++.+.......++++|+++.|++||+|+.+....+.| +++.+
T Consensus 10 ~~~~~~~~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i 89 (731)
T PRK07560 10 ILELMKNPEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLI 89 (731)
T ss_pred HHHHhhchhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEE
Confidence 33455566789999999999999999999999998887654444468899999999999999999888877 47899
Q ss_pred EEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHH
Q 005713 155 NIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIE 234 (681)
Q Consensus 155 ~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~ 234 (681)
+|+|||||.||..++.++++.+|++|+|||+.+|+..||+.+|+.+.+.++|+|+|+||+|+..+++....+++++.+..
T Consensus 90 ~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~ 169 (731)
T PRK07560 90 NLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLK 169 (731)
T ss_pred EEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999877665555554443322
Q ss_pred -----------hhccc-------ccCCceEEEeecccCCCCCCCC--CC----------------------CCCcchhHH
Q 005713 235 -----------LNATD-------EQCDFQAIYASGIQGKAGLSPD--NL----------------------ADDLGPLFE 272 (681)
Q Consensus 235 -----------l~~~~-------~~~~~pvi~~SA~~G~~~~~~~--~~----------------------~~gi~~Ll~ 272 (681)
+.... ...+-.++++||+.+|+..... .. -.-+..||+
T Consensus 170 ~~~e~~~~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Lld 249 (731)
T PRK07560 170 IIKDVNKLIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLD 249 (731)
T ss_pred HHHHHHHHHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHHHH
Confidence 11110 0112357789999998543100 00 000137999
Q ss_pred HHHhhCCCCcc-------------------------ccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCC
Q 005713 273 SIMRCIPGPRI-------------------------EKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSE 327 (681)
Q Consensus 273 ~I~~~lp~p~~-------------------------~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~ 327 (681)
.|.+++|+|.. ++++||.++|||+.++++.|+++++||++|+|++||.|++.+.+
T Consensus 250 ~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~ 329 (731)
T PRK07560 250 MVVKHLPNPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAK 329 (731)
T ss_pred HHHHhCCChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCC
Confidence 99999999952 34679999999999999999999999999999999999999887
Q ss_pred CceeeeEEEeEEEeeccceeecceecCCCEEEEecccccccCCeeeccCCCCCCCCC-ccCCCeeeEEEeecCCCCCccc
Q 005713 328 DSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPSI-KVEEPTVKMSFSINTSPFVGRE 406 (681)
Q Consensus 328 ~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~-~~~~P~~~~~~~~~~~~~~g~~ 406 (681)
.+. +|++|+.+.|.+..++++|.|||||+|.|++++.+||||++.....+++++ .+++|++++++++.+ ..|
T Consensus 330 ~~~---~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~GdtL~~~~~~~~~~~~~~~p~Pv~~~aI~p~~----~~d 402 (731)
T PRK07560 330 KKN---RVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDARAGETVVSVEDMTPFESLKHISEPVVTVAIEAKN----PKD 402 (731)
T ss_pred Cce---EeheehhhhcCCCceeeeECCCCEEEEEcccccccCCEEeCCCccccccccccCCCCeEEEEEEECC----HHH
Confidence 665 899999999999999999999999999999999999999987766777776 488999999999875 334
Q ss_pred CccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHHhhhhhc-ceEEEEcCCeeEEEe----------
Q 005713 407 GKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENMRRE-GYEFMVGPPKVINKK---------- 475 (681)
Q Consensus 407 ~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~e~lrre-g~e~~~~~P~Vi~~~---------- 475 (681)
..+|.++|.++.++||+|+|+.++++++++++|+|||||++++++|+++ |+++.+++|+|+|||
T Consensus 403 -----~~kL~~aL~~L~~eDPsl~v~~~~etge~~l~g~GElHLei~~~rL~~~~~vev~~~~p~V~yrETI~~~~~~~~ 477 (731)
T PRK07560 403 -----LPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELHLEVITYRIKRDYGIEVVTSEPIVVYRETVRGKSQVVE 477 (731)
T ss_pred -----HHHHHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCHHHHHHHHHHHHHHhCCceEecCCEEEEEEecccCccceE
Confidence 6899999999999999999999999999999999999999999999765 999999999999998
Q ss_pred --------------------e------------------------------------------CC---------------
Q 005713 476 --------------------V------------------------------------------ND--------------- 478 (681)
Q Consensus 476 --------------------~------------------------------------------~g--------------- 478 (681)
. .|
T Consensus 478 ~~~~~~~~~v~l~iePl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~i~~~~~~~~f~~~~~gg~~~~~ 557 (731)
T PRK07560 478 GKSPNKHNRFYISVEPLEEEVIEAIKEGEISEDMDKKEAKILREKLIEAGMDKDEAKRVWAIYNGNVFIDMTKGIQYLNE 557 (731)
T ss_pred EECCCCceEEEEEEEECCHHHHHHHhcCCcccccchHHHHHHHHhhhhcCCchhhhhceeeccCCeEEEECCCCccCHHH
Confidence 0 01
Q ss_pred ----------------------------------------------------------------eecCcEEEEEEEecCC
Q 005713 479 ----------------------------------------------------------------KLLEPYEIATVEVPEE 494 (681)
Q Consensus 479 ----------------------------------------------------------------~llEP~~~~~i~vp~~ 494 (681)
+||||||+|+|.||++
T Consensus 558 ~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~d~~~~~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~ 637 (731)
T PRK07560 558 VMELIIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHEDAIHRGPAQVIPAVRNAIFAAMLTAKPTLLEPIQKVDINVPQD 637 (731)
T ss_pred HHHHHHHHHHHHHhcCCccCCceeeEEEEEEEeeecccccccccchHHHHHHHHHHHHHHhCCCEEeecEEEEEEEecHH
Confidence 6899999999999999
Q ss_pred ChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceeecCCCC
Q 005713 495 HMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWAGDI 564 (681)
Q Consensus 495 ~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~g~~ 564 (681)
|+|+|+++|++|||+|.+++.. +++..|+|.+|+++++||.++||++|+|+|+|++.|+||+++++++
T Consensus 638 ~~g~v~~~L~~rrg~i~~~~~~--~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~ 705 (731)
T PRK07560 638 YMGAVTREIQGRRGKILDMEQE--GDMAIIEAEAPVAEMFGFAGEIRSATEGRALWSTEFAGFEPVPDSL 705 (731)
T ss_pred HhhHHHHHHHhcCCeeeeeecC--CCcEEEEEEEehHHhcCCchHHHhhCcCCceEEEEeccceeCCHHH
Confidence 9999999999999999999863 3579999999999999999999999999999999999999998644
No 13
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=7e-75 Score=607.22 Aligned_cols=481 Identities=30% Similarity=0.480 Sum_probs=421.3
Q ss_pred ccCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC-----eEEEEEe
Q 005713 84 MRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND-----TKINIID 158 (681)
Q Consensus 84 ~~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-----~~i~iiD 158 (681)
++.+++||.+|++|.|||||||.++|+..++....... .+.++|+++.||||||||......+.|+. +.+||||
T Consensus 4 ~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem-~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlID 82 (603)
T COG0481 4 TPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREM-RAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLID 82 (603)
T ss_pred cchhhccceEEEEEecCCcchHHHHHHHHhcCcChHHH-HHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcC
Confidence 34567999999999999999999999999988765433 47899999999999999999999988863 8999999
Q ss_pred CCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcc
Q 005713 159 TPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT 238 (681)
Q Consensus 159 TPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~ 238 (681)
||||.||.-|+.+++..|.|+||||||+.|++.||..-...+.+.++-+|.|+||+|++.++++++..++.+.+ .+.+.
T Consensus 83 TPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~i-Gid~~ 161 (603)
T COG0481 83 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDII-GIDAS 161 (603)
T ss_pred CCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHHHHHHHHHHh-CCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998865 23332
Q ss_pred cccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCC
Q 005713 239 DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKG 318 (681)
Q Consensus 239 ~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~g 318 (681)
+ .+.+|||+|. |+.++|++|++.+|+|..+.++|+++++|+.+||+|.|.+++.||+.|++++|
T Consensus 162 d------av~~SAKtG~----------gI~~iLe~Iv~~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~dG~ik~g 225 (603)
T COG0481 162 D------AVLVSAKTGI----------GIEDVLEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFDGTLKKG 225 (603)
T ss_pred h------heeEecccCC----------CHHHHHHHHHhhCCCCCCCCCCcceEEEEeccccccceEEEEEEEeeceecCC
Confidence 2 7899999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEE-ecc---cccccCCeeeccCC--CCCCCCCccCCCeee
Q 005713 319 MEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV-CGI---DDIQIGETIADKVS--GKPLPSIKVEEPTVK 392 (681)
Q Consensus 319 d~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i-~gl---~~~~~Gdtl~~~~~--~~~l~~~~~~~P~~~ 392 (681)
|+|.++.++++. .|.++..|. .+....++..|||++.+ +|+ .++.+||||+...+ .+|||.++...|++.
T Consensus 226 dki~~m~tg~~y---~V~evGvft-P~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~p~~e~LpGfk~~~P~Vf 301 (603)
T COG0481 226 DKIRMMSTGKEY---EVDEVGIFT-PKMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNPATEPLPGFKEVKPMVF 301 (603)
T ss_pred CEEEEEecCCEE---EEEEEeecc-CCccccccccCCceeEEEEeeeecccCcccceEeccCCCccccCCCCCcCCceEE
Confidence 999999999887 788887775 57888999999999988 555 47899999996544 478999999999999
Q ss_pred EEEeecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCC---CceEEecccchhhhhHHhhhhhc-ceEEEEcC
Q 005713 393 MSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETA---DTFIVSGRGTLHITILIENMRRE-GYEFMVGP 468 (681)
Q Consensus 393 ~~~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~---~~~~v~g~Gelhl~il~e~lrre-g~e~~~~~ 468 (681)
..+.|-+ ..+ .+.|+++|.|+..+|.+|.+|+..+. -+|+++++|-|||+|+.|||+|| +.++..+.
T Consensus 302 ~GlyPid----~~d-----ye~LrdAleKL~LNDasl~~E~EtS~ALGfGfRcGFLGlLHmeiiqERLeREf~ldlI~Ta 372 (603)
T COG0481 302 AGLYPVD----SDD-----YEDLRDALEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREFDLDLITTA 372 (603)
T ss_pred EeecccC----hhH-----HHHHHHHHHhcccccceeeeccccchhccCceeehhhhHHHHHHHHHHHHHhhCcceEecC
Confidence 9888765 233 68999999999999999999987653 38999999999999999999998 99999999
Q ss_pred CeeEEEee--C------------------CeecCcEEEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEe
Q 005713 469 PKVINKKV--N------------------DKLLEPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKI 528 (681)
Q Consensus 469 P~Vi~~~~--~------------------g~llEP~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~v 528 (681)
|.|+|+-. + -.+.|||.+++|.+|+||+|.||+.++.+||...+|++. +..++.|.|++
T Consensus 373 PsV~Y~v~~~~g~~~~i~NPs~~P~~~~I~~i~EP~v~~~ii~P~eylG~vm~Lcq~kRG~~~~m~yl-~~~rv~l~Y~l 451 (603)
T COG0481 373 PSVVYKVELTDGEEIEVDNPSDLPDPNKIEEIEEPYVKATIITPQEYLGNVMELCQEKRGIQIDMEYL-DQNRVMLTYEL 451 (603)
T ss_pred CceEEEEEEcCCcEEEecChHhCCChhhhheeeCceeEEEEeCcHHHHHHHHHHHHHhcCceecceEe-cCceEEEEEec
Confidence 99999861 1 157999999999999999999999999999999999998 45699999999
Q ss_pred echhhc-chHHHHhhcCcceEEEEeeecceeecCCCCCCcccceEEeCCCccchHH--hhhchhhhCCccccCCc
Q 005713 529 PTRGLL-GLRNAILTASRGTAILNTIFDGYGPWAGDISTRDQGSLVAFEDGTTTSY--ALSSSQERGQMFLGPGV 600 (681)
Q Consensus 529 P~~~l~-gy~~~l~s~T~G~g~~~~~f~~Y~~~~g~~~~~~~g~~~~~~~g~~t~~--~l~~~~~rG~~f~~~~~ 600 (681)
|++|++ +|.+.|+|.|+|+|+|.++|.+|++.. -.+-..|+..+.-+|-++ .-..++.||+-++..--
T Consensus 452 Pl~Eiv~DFfDkLKS~skGYAS~DYe~~~y~~~~----lVK~dIlvNge~VDALs~ivHrd~A~~rgr~~~~KlK 522 (603)
T COG0481 452 PLAEIVFDFFDKLKSISKGYASFDYEFIGYRESD----LVKVDILVNGEKVDALSFIVHRDNAYERGRELVEKLK 522 (603)
T ss_pred chHHHHHHHhHhhhccccceeeeccccccccccc----eEEEEEEecCccccceeeeechhHHHHHHHHHHHHHH
Confidence 999985 899999999999999999999998763 223334444444444333 34567788876665433
No 14
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=8.7e-74 Score=668.23 Aligned_cols=456 Identities=30% Similarity=0.499 Sum_probs=408.4
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCcccccccee--eeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCcc
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK--ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS 163 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~ 163 (681)
.+++|||+|+||+|+|||||+++|+..++.+...+.+. ++++|+.+.|++||+|+......+.|+++.++|||||||.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 45789999999999999999999999887665544332 5789999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhh-------
Q 005713 164 DFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN------- 236 (681)
Q Consensus 164 df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~------- 236 (681)
+|..++..+++.+|++|+|+|+.++...++..+|..+...++|+++|+||+|+..+++.++++++++.+....
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~~P~ 164 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGKRPLPLQLPI 164 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 9999999999999999999999999999999999999999999999999999998888777777765542200
Q ss_pred ------------------------------------------------------ccc-----------------------
Q 005713 237 ------------------------------------------------------ATD----------------------- 239 (681)
Q Consensus 237 ------------------------------------------------------~~~----------------------- 239 (681)
..+
T Consensus 165 ~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~~~~~ 244 (687)
T PRK13351 165 GSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLRAPLR 244 (687)
T ss_pred ccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHH
Confidence 000
Q ss_pred ----ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCcc------------------ccCCceEEEEEEee
Q 005713 240 ----EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI------------------EKDGALQMLATNLE 297 (681)
Q Consensus 240 ----~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~------------------~~~~p~~~~V~~~~ 297 (681)
...-+|++++||++|. |+..||+.|++++|+|.. ++++|+.++||++.
T Consensus 245 ~~~~~~~~~PV~~gSA~~~~----------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl~a~VfK~~ 314 (687)
T PRK13351 245 EGTRSGHLVPVLFGSALKNI----------GIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPLLALVFKVQ 314 (687)
T ss_pred HHHHhCCEEEEEecccCcCc----------cHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCeEEEEEEee
Confidence 0013799999999999 999999999999999952 45689999999999
Q ss_pred ecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEecccccccCCeeeccCC
Q 005713 298 YDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVS 377 (681)
Q Consensus 298 ~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~ 377 (681)
++++.|+++++||++|+|++||.|++.+.+..+ +|.+|+.+.|.++.++++|.||||+++.|++++.+||||++...
T Consensus 315 ~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~~~~---~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~gdtl~~~~~ 391 (687)
T PRK13351 315 YDPYAGKLTYLRVYSGTLRAGSQLYNGTGGKRE---KVGRLFRLQGNKREEVDRAKAGDIVAVAGLKELETGDTLHDSAD 391 (687)
T ss_pred ecCCCceEEEEEEeEEEEcCCCEEEeCCCCCce---EeeeEEEEccCCeeECCccCCCCEEEEECcccCccCCEEeCCCC
Confidence 999999999999999999999999999887665 89999999999999999999999999999999999999998766
Q ss_pred CCCCCCCccCCCeeeEEEeecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHHhhh
Q 005713 378 GKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENM 457 (681)
Q Consensus 378 ~~~l~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~e~l 457 (681)
...++++.+++|++++++++.+ ..+ ..+|.++|.++.++||+|+|..++++++++++|+|||||+|++++|
T Consensus 392 ~~~~~~~~~~~pv~~~~Iep~~----~~d-----~~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g~GelHLei~~~rL 462 (687)
T PRK13351 392 PVLLELLTFPEPVVSLAVEPER----RGD-----EQKLAEALEKLVWEDPSLRVEEDEETGQTILSGMGELHLEVALERL 462 (687)
T ss_pred ccccCCCCCCCccEEEEEEECC----ccc-----HHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHH
Confidence 6667778889999999999876 334 6899999999999999999999989999999999999999999999
Q ss_pred hhc-ceEEEEcCCeeEEEee------------------------------------------------------------
Q 005713 458 RRE-GYEFMVGPPKVINKKV------------------------------------------------------------ 476 (681)
Q Consensus 458 rre-g~e~~~~~P~Vi~~~~------------------------------------------------------------ 476 (681)
+++ |+|+.+++|+|+|||.
T Consensus 463 ~~~~~vev~~~~p~V~y~Eti~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~~~~g~~~~~~~~~~~~~~~~~~ai~~g~ 542 (687)
T PRK13351 463 RREFKLEVNTGKPQVAYRETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLERGAGFIFVSKVVGGAIPEELIPAVEKGI 542 (687)
T ss_pred HHHhCCceEecCCeEEEEeeccccccccceeeeccCCCceEEEEEEEEEECCCCCCcEEeecccCCcCCHHHHHHHHHHH
Confidence 987 9999999999999980
Q ss_pred ---------------------------------------------------CCeecCcEEEEEEEecCCChhhHHHHHhc
Q 005713 477 ---------------------------------------------------NDKLLEPYEIATVEVPEEHMGPVVELLGK 505 (681)
Q Consensus 477 ---------------------------------------------------~g~llEP~~~~~i~vp~~~~G~v~~~l~~ 505 (681)
..+||||||+|+|.||++|+|+||++|++
T Consensus 543 ~~a~~~GpL~~~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~ 622 (687)
T PRK13351 543 REALASGPLAGYPVTDLRVTVLDGKYHPVDSSESAFKAAARKAFLEAFRKANPVLLEPIMELEITVPTEHVGDVLGDLSQ 622 (687)
T ss_pred HHHHhcCCCCCCceeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEechHhhhhHHHHHHh
Confidence 02689999999999999999999999999
Q ss_pred cCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceeecCCCC
Q 005713 506 RRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWAGDI 564 (681)
Q Consensus 506 RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~g~~ 564 (681)
|||+|++++..+ ++...|+|.+|+++++||.++||++|+|+|+|++.|+||++++++.
T Consensus 623 rrg~i~~~~~~~-~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~ 680 (687)
T PRK13351 623 RRGRIEGTEPRG-DGEVLVKAEAPLAELFGYATRLRSMTKGRGSFTMEFSHFDPVPPAV 680 (687)
T ss_pred CCcEEeceecCC-CcEEEEEEEECHHHhhChHHHHHhhcCCceEEEEEeccceeCCHHH
Confidence 999999998753 3334499999999999999999999999999999999999999765
No 15
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=1.3e-71 Score=649.66 Aligned_cols=470 Identities=33% Similarity=0.535 Sum_probs=402.4
Q ss_pred hhhccCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeE----EeeCCeEEEE
Q 005713 81 SRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTS----ITYNDTKINI 156 (681)
Q Consensus 81 ~~~~~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~----~~~~~~~i~i 156 (681)
..+...+.+|||+|+||+|||||||+++|+..++.+........+++|+.+.|++||+|+...... +.|+++.++|
T Consensus 11 ~~~~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~l 90 (720)
T TIGR00490 11 ELMWKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINL 90 (720)
T ss_pred HHhhCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEE
Confidence 344456689999999999999999999999988877654333467899999999999999887655 6788999999
Q ss_pred EeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhh
Q 005713 157 IDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN 236 (681)
Q Consensus 157 iDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~ 236 (681)
||||||.+|..++.++++.+|++|+|+|+.+|+..++..+|+.+...++|+++|+||+|+..+++....+++++.|...-
T Consensus 91 iDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~~ 170 (720)
T TIGR00490 91 IDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKII 170 (720)
T ss_pred EeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999899999999999999998888777777776654311
Q ss_pred --------c--ccc--------cCCceEEEeecccCCCCCCCC-----------------CCCCC-------cchhHHHH
Q 005713 237 --------A--TDE--------QCDFQAIYASGIQGKAGLSPD-----------------NLADD-------LGPLFESI 274 (681)
Q Consensus 237 --------~--~~~--------~~~~pvi~~SA~~G~~~~~~~-----------------~~~~g-------i~~Ll~~I 274 (681)
. .++ ..+..+.++|++.+|+..-+. ..... +..||+.|
T Consensus 171 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv~~~Lld~i 250 (720)
T TIGR00490 171 TEVNKLIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKSPLHQVVLDMV 250 (720)
T ss_pred HHHHhhhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccHHHHhhhhhHHHHHHHHH
Confidence 0 000 002234566777775331100 00111 46789999
Q ss_pred HhhCCCCcc-------------------------ccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCc
Q 005713 275 MRCIPGPRI-------------------------EKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDS 329 (681)
Q Consensus 275 ~~~lp~p~~-------------------------~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~ 329 (681)
++++|+|.. ++++||.++|+|+.++++.|+++++||+||+|++||.|++.+.+..
T Consensus 251 ~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~~~ 330 (720)
T TIGR00490 251 IRHLPSPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRKAK 330 (720)
T ss_pred HHhCCChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCCCe
Confidence 999999941 2357899999999999999999999999999999999999988876
Q ss_pred eeeeEEEeEEEeeccceeecceecCCCEEEEecccccccCCeeeccCCC-CCCCCC-ccCCCeeeEEEeecCCCCCcccC
Q 005713 330 CRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSG-KPLPSI-KVEEPTVKMSFSINTSPFVGREG 407 (681)
Q Consensus 330 ~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~-~~l~~~-~~~~P~~~~~~~~~~~~~~g~~~ 407 (681)
. +|.+|+.+.|.+..++++|.|||||+|.|++++.+|||||+.... .+++++ .+++|++++++++.+ ..+
T Consensus 331 ~---kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~----~~d- 402 (720)
T TIGR00490 331 A---RIQQVGVYMGPERVEVDEIPAGNIVAVIGLKDAVAGETICTTVENITPFESIKHISEPVVTVAIEAKN----TKD- 402 (720)
T ss_pred e---EeeEEEEeccCCccCccEECCCCEEEEECccccccCceeecCCcccccCcccccCCCceEEEEEEECC----HHH-
Confidence 5 999999999999999999999999999999999999999976543 345655 478999999999875 233
Q ss_pred ccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHHhhhhhc-ceEEEEcCCeeEEEe-----------
Q 005713 408 KYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENMRRE-GYEFMVGPPKVINKK----------- 475 (681)
Q Consensus 408 ~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~e~lrre-g~e~~~~~P~Vi~~~----------- 475 (681)
..+|.++|.++.++||+|+|..++++++++++|+|||||+|++++|+++ |+|+.+++|+|+|||
T Consensus 403 ----~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei~~~rL~~~~~vev~~~~P~V~YrETi~~~~~~~~~ 478 (720)
T TIGR00490 403 ----LPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEIIVEKIREDYGLDVETSPPIVVYRETVTGTSPVVEG 478 (720)
T ss_pred ----HHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHHHHHHHHHHhCCceeecCCEEEEEEeccccccceEE
Confidence 6899999999999999999999999999999999999999999999987 999999999999998
Q ss_pred ------------------e-----------------------------------------CC------------------
Q 005713 476 ------------------V-----------------------------------------ND------------------ 478 (681)
Q Consensus 476 ------------------~-----------------------------------------~g------------------ 478 (681)
. +|
T Consensus 479 ~~~~~~~~v~l~iePl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~gg~i~~~~~~ 558 (720)
T TIGR00490 479 KSPNKHNRFYIVVEPLEESVIQAFKEGKIVDMKMKKKERRRLLIEAGMDSEEAARVEEYYEGNLFINMTRGIQYLDETKE 558 (720)
T ss_pred EcCCCcEEEEEEEEECCcchhhhhhcccccccccchHHHHHHHHhcCCchhhhcCEEEecCCeEEEECCCCCCCHHHHHH
Confidence 1 11
Q ss_pred -------------------------------------------------------------eecCcEEEEEEEecCCChh
Q 005713 479 -------------------------------------------------------------KLLEPYEIATVEVPEEHMG 497 (681)
Q Consensus 479 -------------------------------------------------------------~llEP~~~~~i~vp~~~~G 497 (681)
+||||||+|+|.||++|+|
T Consensus 559 av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~vds~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~~ei~~p~~~~g 638 (720)
T TIGR00490 559 LILEGFREAMRNGPIAREKCMGVKVKLMDAKLHEDAVHRGPAQVIPAVRSGIFAAMMQAKPVLLEPYQKVFINVPQDMMG 638 (720)
T ss_pred HHHHHHHHHHHcCCcCCCcccceEEEEEeeccccccccCccchHHHHHHHHHHHHHHhCCCeEecceEEEEEEccHHHHh
Confidence 7999999999999999999
Q ss_pred hHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceeecCCCC
Q 005713 498 PVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWAGDI 564 (681)
Q Consensus 498 ~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~g~~ 564 (681)
+|+++|++|||+|++|+.. ++...|++++|+++++||.++||++|+|+|.|++.|+||+++++++
T Consensus 639 ~v~~~L~~RRg~i~~~~~~--~~~~~I~A~vP~~e~fgy~~~Lrs~T~G~a~~~~~f~~y~~vp~~~ 703 (720)
T TIGR00490 639 AATREIQNRRGQILEMKQE--GDMVTIIAKAPVAEMFGFAGAIRGATSGRCLWSTEHAGFELVPQNL 703 (720)
T ss_pred HHHHHHhhCCceeeeeccC--CCcEEEEEEEehHHhcCCcHHHHhhCCCCceEEEEecccccCCHHH
Confidence 9999999999999999863 3579999999999999999999999999999999999999998664
No 16
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=5.5e-71 Score=643.65 Aligned_cols=446 Identities=30% Similarity=0.484 Sum_probs=400.5
Q ss_pred EeCCCCcHHHHHHHHHhhcCcccccccee--eeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHHHH
Q 005713 95 IAHVDHGKTTLVDAMLKQAKVFRDNQTVK--ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVERI 172 (681)
Q Consensus 95 iG~~~~GKTTLi~~Ll~~~~~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~~~ 172 (681)
+||+|||||||+++|++.++.+...+.+. ++++|+.+.|++||+|+......+.|+++.++|||||||.+|..++.++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 69999999999999999988776544332 5899999999999999999999999999999999999999999999999
Q ss_pred HhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHH------------------
Q 005713 173 LNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIE------------------ 234 (681)
Q Consensus 173 l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~------------------ 234 (681)
++.+|++|+|+|++++...++..+|..+...++|+++|+||+|+..++..++++++.+.+..
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~~~~~~~~p~~~~~~~~~~ 160 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGAPVVPLQLPIGEGDDFTGV 160 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCceeEEecccCCCCceEE
Confidence 99999999999999999999999999999999999999999999877766666666554321
Q ss_pred ----------------------------------------hhcc-c--------------------------ccCCceEE
Q 005713 235 ----------------------------------------LNAT-D--------------------------EQCDFQAI 247 (681)
Q Consensus 235 ----------------------------------------l~~~-~--------------------------~~~~~pvi 247 (681)
+... + ...-+|++
T Consensus 161 id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~Pv~ 240 (668)
T PRK12740 161 VDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIVPVF 240 (668)
T ss_pred EECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 0000 0 00137999
Q ss_pred EeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCcc-----------------ccCCceEEEEEEeeecCCCceEEEEEe
Q 005713 248 YASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI-----------------EKDGALQMLATNLEYDEHKGRIAIGRL 310 (681)
Q Consensus 248 ~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~-----------------~~~~p~~~~V~~~~~d~~~G~v~~grV 310 (681)
++||++|. |+..||+.|++++|+|.. ++++|+.++|+++.++++.|+++++||
T Consensus 241 ~gSA~~~~----------Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G~i~~~RV 310 (668)
T PRK12740 241 CGSALKNK----------GVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVGKLSLVRV 310 (668)
T ss_pred eccccCCc----------cHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCCcEEEEEE
Confidence 99999999 999999999999999952 557899999999999999999999999
Q ss_pred ecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEecccccccCCeeeccCCCCCCCCCccCCCe
Q 005713 311 HAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPT 390 (681)
Q Consensus 311 ~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~P~ 390 (681)
++|+|++||+|++.+.++++ +|.+|+.+.|.+..++++|.|||||+|.|++++.+||||++...+.+++++.+++|+
T Consensus 311 ~sG~L~~g~~v~~~~~~~~~---~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~~~~~~~~~~P~ 387 (668)
T PRK12740 311 YSGTLKKGDTLYNSGTGKKE---RVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDAATGDTLCDKGDPILLEPMEFPEPV 387 (668)
T ss_pred eeeEEcCCCEEEeCCCCCcE---EecceeeecCCCccccCccCCCCEEEEeccCccCCCCEEeCCCCccccCCCCCCCcc
Confidence 99999999999999877665 899999999999999999999999999999999999999987766778888899999
Q ss_pred eeEEEeecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHHhhhhhc-ceEEEEcCC
Q 005713 391 VKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENMRRE-GYEFMVGPP 469 (681)
Q Consensus 391 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~e~lrre-g~e~~~~~P 469 (681)
+++++++++ .+| ..+|.++|.++..+||+|+|..++++++++++|+|||||+|++++|+++ |+++.+++|
T Consensus 388 ~~~~i~p~~----~~d-----~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~~~~~~v~~~~p 458 (668)
T PRK12740 388 ISLAIEPKD----KGD-----EEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKREYGVEVETGPP 458 (668)
T ss_pred eEEEEEECC----cch-----HHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHHHhCceeEecCC
Confidence 999999886 334 6899999999999999999999988999999999999999999999987 999999999
Q ss_pred eeEEEee----------------------C-------------------------------------------C------
Q 005713 470 KVINKKV----------------------N-------------------------------------------D------ 478 (681)
Q Consensus 470 ~Vi~~~~----------------------~-------------------------------------------g------ 478 (681)
+|+|||. . |
T Consensus 459 ~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~ep~~~~~~~~f~~~~~~~~~~~~~~~ai~~g~~~a~~~Gpl~g~p 538 (668)
T PRK12740 459 QVPYRETIRKKAEGHGRHKKQSGGHGQFGDVWLEVEPLPRGEGFEFVDKVVGGAVPRQYIPAVEKGVREALEKGVLAGYP 538 (668)
T ss_pred eeEEeeccCCCccccceeccccCCCCceEEEEEEEEECCCCCceEEeecccCCCccHHHHHHHHHHHHHHHhcCCcCCCc
Confidence 9999981 0 2
Q ss_pred ----------------------------------------eecCcEEEEEEEecCCChhhHHHHHhccCeeeeceeecCC
Q 005713 479 ----------------------------------------KLLEPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGS 518 (681)
Q Consensus 479 ----------------------------------------~llEP~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~ 518 (681)
.||||||.++|.||++|+|.|+++|++|||+|.+++..+
T Consensus 539 ~~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rrg~i~~~~~~~- 617 (668)
T PRK12740 539 VVDVKVTLTDGSYHSVDSSEMAFKIAARLAFREALPKAKPVLLEPIMKVEVSVPEEFVGDVIGDLSSRRGRILGMESRG- 617 (668)
T ss_pred eeeEEEEEEecccccCCCCHHHHHHHHHHHHHHHHHhcCCeeecceEEEEEEechhhhhhHHHHHHhCCCeEeccccCC-
Confidence 589999999999999999999999999999999998753
Q ss_pred CCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceeecCCCC
Q 005713 519 EGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWAGDI 564 (681)
Q Consensus 519 ~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~g~~ 564 (681)
+ .++|+|.+|+++++||.++||++|+|+|+|++.|+||++++++.
T Consensus 618 ~-~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~~~~~~ 662 (668)
T PRK12740 618 G-GDVVRAEVPLAEMFGYATDLRSLTQGRGSFSMEFSHYEEVPGNV 662 (668)
T ss_pred C-CEEEEEEcCHHHhhchHHHHHHhcCCeEEEEEEecccccCCHHH
Confidence 3 38999999999999999999999999999999999999998754
No 17
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=5e-70 Score=644.55 Aligned_cols=477 Identities=27% Similarity=0.456 Sum_probs=395.9
Q ss_pred HHhhhccCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC--------
Q 005713 79 KKSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN-------- 150 (681)
Q Consensus 79 ~~~~~~~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-------- 150 (681)
....+...+++|||+|+||+|||||||+++|++.++.+........+++|++++|++||+|+.+....+.|.
T Consensus 9 ~~~~~~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~ 88 (843)
T PLN00116 9 LRRIMDKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKD 88 (843)
T ss_pred HHHHhhCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccc
Confidence 344556678899999999999999999999999998876655445788999999999999999998888884
Q ss_pred --------CeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCC-----
Q 005713 151 --------DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP----- 217 (681)
Q Consensus 151 --------~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~----- 217 (681)
++.+||||||||.||.+++.++++.+|++|+|||+.+|++.||+.+|+.+...++|+|+|+||+|+.
T Consensus 89 ~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~ 168 (843)
T PLN00116 89 FKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQ 168 (843)
T ss_pred cccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhc
Confidence 6889999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --C----CCcccchhhHHHHHHHhhcc--cc----cCCceEEEeecccCCCCC---------------------------
Q 005713 218 --S----ARPDYVINSTFELFIELNAT--DE----QCDFQAIYASGIQGKAGL--------------------------- 258 (681)
Q Consensus 218 --~----~~~~~~~~ei~~~~~~l~~~--~~----~~~~pvi~~SA~~G~~~~--------------------------- 258 (681)
. +++..++++++..+..+... .. ...-.++|+|++.||...
T Consensus 169 ~~~~~~~~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~ 248 (843)
T PLN00116 169 VDGEEAYQTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGEN 248 (843)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccc
Confidence 2 45566666666333222111 00 011124455554332100
Q ss_pred ------------C---C------------------------C---------C------------------------CCCC
Q 005713 259 ------------S---P------------------------D---------N------------------------LADD 266 (681)
Q Consensus 259 ------------~---~------------------------~---------~------------------------~~~g 266 (681)
. . + . +..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~~~~pv~~~ 328 (843)
T PLN00116 249 FFDPATKKWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWLPA 328 (843)
T ss_pred eEcCCCceEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHHHHHhhcCC
Confidence 0 0 0 0 0112
Q ss_pred cchhHHHHHhhCCCCcc-------------------------ccCCceEEEEEEeeecCCCce-EEEEEeecccccCCCE
Q 005713 267 LGPLFESIMRCIPGPRI-------------------------EKDGALQMLATNLEYDEHKGR-IAIGRLHAGVLRKGME 320 (681)
Q Consensus 267 i~~Ll~~I~~~lp~p~~-------------------------~~~~p~~~~V~~~~~d~~~G~-v~~grV~sG~lk~gd~ 320 (681)
...||+.+++++|+|.. ++++|+.++|||+..+++.|+ ++|+|||||+|++||.
T Consensus 329 s~~Lld~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~ 408 (843)
T PLN00116 329 SDALLEMIIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGMK 408 (843)
T ss_pred hHHHHHHHHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCCE
Confidence 26789999999999841 225689999999999988888 9999999999999999
Q ss_pred EEEccCC----Cc--eeeeEEEeEEEeeccceeecceecCCCEEEEeccccccc-CCeeeccC--CCCCCCCCccC-CCe
Q 005713 321 VRVCTSE----DS--CRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQI-GETIADKV--SGKPLPSIKVE-EPT 390 (681)
Q Consensus 321 v~~~~~~----~~--~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~-Gdtl~~~~--~~~~l~~~~~~-~P~ 390 (681)
|++++.+ .. ...++|.+|+.+.|.+..++++|.|||||+|.|+++..+ ||||++.. .+.+++++.++ +|+
T Consensus 409 v~v~~~n~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~~~~l~~~~~~~~Pv 488 (843)
T PLN00116 409 VRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIKAMKFSVSPV 488 (843)
T ss_pred EEEeCCCCCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccCCccccccccCCCce
Confidence 9865432 11 222488999999999999999999999999999987655 99998876 45667788888 999
Q ss_pred eeEEEeecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHHhhhhh-c--ceEEEEc
Q 005713 391 VKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENMRR-E--GYEFMVG 467 (681)
Q Consensus 391 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~e~lrr-e--g~e~~~~ 467 (681)
++++++|.+ ..| ..+|.++|.++.++||+|++.. +++++++++|+|||||+|++++|++ . |+++.++
T Consensus 489 ~~~aIeP~~----~~d-----~~kL~~aL~~L~~eDPsl~v~~-~etge~il~g~GElHLEi~~~rL~~~f~~~vev~~s 558 (843)
T PLN00116 489 VRVAVQCKN----ASD-----LPKLVEGLKRLAKSDPMVQCTI-EESGEHIIAGAGELHLEICLKDLQDDFMGGAEIKVS 558 (843)
T ss_pred EEEEEEECC----hhh-----HHHHHHHHHHHHHhCCCeEEEE-cCCCCEEEEEccHHHHHHHHHHHHHHhhCCCcEEEc
Confidence 999999875 334 6899999999999999999966 7899999999999999999999986 4 8999999
Q ss_pred CCeeEEEe-----------------------------eC-----------------------------------------
Q 005713 468 PPKVINKK-----------------------------VN----------------------------------------- 477 (681)
Q Consensus 468 ~P~Vi~~~-----------------------------~~----------------------------------------- 477 (681)
+|+|+||| .+
T Consensus 559 ~p~V~yrETI~~~~~~~~~~~~~~~~~~v~l~iePl~~~~~~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~g 638 (843)
T PLN00116 559 DPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCFG 638 (843)
T ss_pred CCeEEEEecccccccCcEEEecCCceEEEEEEEEECCHHHHHHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCeeeec
Confidence 99999998 01
Q ss_pred ----C---------------------------------------------------------------------------
Q 005713 478 ----D--------------------------------------------------------------------------- 478 (681)
Q Consensus 478 ----g--------------------------------------------------------------------------- 478 (681)
|
T Consensus 639 p~~~~~~~~~~~~~g~~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~~~Al 718 (843)
T PLN00116 639 PETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVIYASQ 718 (843)
T ss_pred CCCCCceEEEECCcchhhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHHHHHHHHHHHHH
Confidence 0
Q ss_pred -----eecCcEEEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEee
Q 005713 479 -----KLLEPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTI 553 (681)
Q Consensus 479 -----~llEP~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~ 553 (681)
+||||||+|+|.||++|+|+||++|++|||.|++++..+++....|++++|+++++||.++||++|+|+|+|+++
T Consensus 719 ~~a~p~LlEPi~~veI~~p~~~~G~V~~dL~~RRG~i~~~~~~~~t~~~~I~A~vPl~e~~gy~~~LRs~T~G~g~~~~~ 798 (843)
T PLN00116 719 LTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCV 798 (843)
T ss_pred HhCCCEEeeceeEEEEEccHHHHhHHHHHHHhcCCccceeeecCCCceEEEEEEeeHHHHcCCCHHHHhhCCCCCeEEEE
Confidence 699999999999999999999999999999999998753334589999999999999999999999999999999
Q ss_pred ecceeecCCCCC
Q 005713 554 FDGYGPWAGDIS 565 (681)
Q Consensus 554 f~~Y~~~~g~~~ 565 (681)
|+||++++++.-
T Consensus 799 f~~y~~v~~dp~ 810 (843)
T PLN00116 799 FDHWDMMSSDPL 810 (843)
T ss_pred eceeEECCCCCC
Confidence 999999997753
No 18
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=1.6e-68 Score=630.40 Aligned_cols=474 Identities=28% Similarity=0.434 Sum_probs=394.8
Q ss_pred hhhccCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC----------
Q 005713 81 SRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN---------- 150 (681)
Q Consensus 81 ~~~~~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---------- 150 (681)
..+...+++|||+|+||+|||||||+++|++.++.+........+++|++++|++||+|+.+....+.|.
T Consensus 11 ~~~~~~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~ 90 (836)
T PTZ00416 11 EIMDNPDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQ 90 (836)
T ss_pred HHhhCccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCC
Confidence 3444567899999999999999999999999988766554444678999999999999999988888886
Q ss_pred CeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCC----C-------C
Q 005713 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP----S-------A 219 (681)
Q Consensus 151 ~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~----~-------~ 219 (681)
++.++|+|||||.||.+++.++++.+|++|+|+|+.+|+..||+.+|+.+...++|+|+|+||+|+. . +
T Consensus 91 ~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~~ 170 (836)
T PTZ00416 91 PFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIYQ 170 (836)
T ss_pred ceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999998 4 5
Q ss_pred CcccchhhHHHHHHHhhccc------ccCCceEEEeecccCCCCC-----------------------------C-----
Q 005713 220 RPDYVINSTFELFIELNATD------EQCDFQAIYASGIQGKAGL-----------------------------S----- 259 (681)
Q Consensus 220 ~~~~~~~ei~~~~~~l~~~~------~~~~~pvi~~SA~~G~~~~-----------------------------~----- 259 (681)
++.+++++++..+..+.... ......+.+.|+..||+.. +
T Consensus 171 ~~~~ii~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~~~~ 250 (836)
T PTZ00416 171 NFVKTIENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAKTKK 250 (836)
T ss_pred HHHHHHHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccCCCCE
Confidence 66777888877665322110 0111123344444322200 0
Q ss_pred ---C-------------------------------C------CCC------------C---------------CcchhHH
Q 005713 260 ---P-------------------------------D------NLA------------D---------------DLGPLFE 272 (681)
Q Consensus 260 ---~-------------------------------~------~~~------------~---------------gi~~Ll~ 272 (681)
. + .+. . -+..||+
T Consensus 251 ~~~~~~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~~~~~Pv~~~Lld 330 (836)
T PTZ00416 251 WIKDETNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVMQKWLPAADTLLE 330 (836)
T ss_pred EEeccCCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHHHHHhchHHHHHH
Confidence 0 0 000 0 0156899
Q ss_pred HHHhhCCCCcc-------------------------ccCCceEEEEEEeeecCCCce-EEEEEeecccccCCCEEEEccC
Q 005713 273 SIMRCIPGPRI-------------------------EKDGALQMLATNLEYDEHKGR-IAIGRLHAGVLRKGMEVRVCTS 326 (681)
Q Consensus 273 ~I~~~lp~p~~-------------------------~~~~p~~~~V~~~~~d~~~G~-v~~grV~sG~lk~gd~v~~~~~ 326 (681)
+|.+++|+|.. ++++|+.++|+|+..+++.|+ ++++|||||+|+.||.|++.+.
T Consensus 331 ~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~g~~v~v~~~ 410 (836)
T PTZ00416 331 MIVDHLPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVRIQGP 410 (836)
T ss_pred HHHHhCCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecCCCEEEEeCC
Confidence 99999999941 224689999999999999999 8999999999999999986544
Q ss_pred CC----ce--eeeEEEeEEEeeccceeecceecCCCEEEEecccc--cccCCeeeccCCCCCCCCCccC-CCeeeEEEee
Q 005713 327 ED----SC--RYARISELFVYEKFSRVSAEIVAAGDICAVCGIDD--IQIGETIADKVSGKPLPSIKVE-EPTVKMSFSI 397 (681)
Q Consensus 327 ~~----~~--~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~--~~~Gdtl~~~~~~~~l~~~~~~-~P~~~~~~~~ 397 (681)
+. +. ...+|.+||.+.|.+..++++|.|||||+|.|+++ ..+| ||++...+.+++++.++ +|++++++++
T Consensus 411 ~~~~~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tg-TL~~~~~~~~l~~i~~~~~Pv~~vaIep 489 (836)
T PTZ00416 411 NYVPGKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSG-TITTSETAHNIRDMKYSVSPVVRVAVEP 489 (836)
T ss_pred CCCCCCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecce-eecCCCCcccccccccCCCCeEEEEEEE
Confidence 31 11 01259999999999999999999999999999988 7889 99887766677778775 9999999998
Q ss_pred cCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHHhhhhhc--ceEEEEcCCeeEEEe
Q 005713 398 NTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENMRRE--GYEFMVGPPKVINKK 475 (681)
Q Consensus 398 ~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~e~lrre--g~e~~~~~P~Vi~~~ 475 (681)
.+ ..| ..+|.++|.++.++||+|.+.. +++++++++|+||+||++++++|+++ |+++.+++|+|+|||
T Consensus 490 ~~----~~d-----~~kL~~aL~~L~~eDPsl~~~~-~etgE~il~g~GElHLei~l~~L~~~f~~vev~~s~P~V~yrE 559 (836)
T PTZ00416 490 KN----PKD-----LPKLVEGLKRLAKSDPLVVCTT-EESGEHIVAGCGELHVEICLKDLEDDYANIDIIVSDPVVSYRE 559 (836)
T ss_pred CC----HHH-----HHHHHHHHHHHHhhCCceEEEE-cCCCCeEEEeCcHhHHHHHHHHHHHHhcCcceEecCCEEEEEE
Confidence 75 334 6899999999999999999976 77999999999999999999999875 899999999999998
Q ss_pred ------------------------e-----C-------------------------------------------------
Q 005713 476 ------------------------V-----N------------------------------------------------- 477 (681)
Q Consensus 476 ------------------------~-----~------------------------------------------------- 477 (681)
. +
T Consensus 560 TI~~~s~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~g~ni 639 (836)
T PTZ00416 560 TVTEESSQTCLSKSPNKHNRLYMKAEPLTEELAEAIEEGKVGPEDDPKERANFLADKYEWDKNDARKIWCFGPENKGPNV 639 (836)
T ss_pred EecccccceEEEECCCCCeeEEEEEEECCHHHHhHhhcCccccccchhHHHhhhhcccCcchhhhhCeeeccCCCCCCcE
Confidence 0 0
Q ss_pred ------C----------------------------------------------------------------------eec
Q 005713 478 ------D----------------------------------------------------------------------KLL 481 (681)
Q Consensus 478 ------g----------------------------------------------------------------------~ll 481 (681)
+ +||
T Consensus 640 l~~~~~~~~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~~a~~~a~p~Ll 719 (836)
T PTZ00416 640 LVDVTKGVQYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFYACELTASPRLL 719 (836)
T ss_pred EEecCCcccchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHHHHHHHHHHhhCCCEEE
Confidence 1 689
Q ss_pred CcEEEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceeecC
Q 005713 482 EPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWA 561 (681)
Q Consensus 482 EP~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 561 (681)
||||.|+|.||++|+|+|+++|++|||+|+++++.+++...+|++.+|+++++||.++||++|+|+|.|++.|+||++++
T Consensus 720 EPi~~veI~~p~~~lg~V~~dL~~RRG~i~~~~~~~~t~~~~I~a~vP~~e~~gy~~~LRs~T~G~g~~~~~F~~y~~vp 799 (836)
T PTZ00416 720 EPMFLVDITAPEDAMGGIYSVLNRRRGVVIGEEQRPGTPLSNIKAYLPVAESFGFTAALRAATSGQAFPQCVFDHWQVVP 799 (836)
T ss_pred eeeEEEEEEEcHHHHhHHHHHHHhcCCCccCcccCCCCCcEEEEEEEehHHhcCCCHHHHhhCcCCceEEEEeccEEECC
Confidence 99999999999999999999999999999999885333358999999999999999999999999999999999999999
Q ss_pred CCCC
Q 005713 562 GDIS 565 (681)
Q Consensus 562 g~~~ 565 (681)
++.-
T Consensus 800 ~dp~ 803 (836)
T PTZ00416 800 GDPL 803 (836)
T ss_pred CCCC
Confidence 8754
No 19
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-63 Score=508.67 Aligned_cols=454 Identities=25% Similarity=0.389 Sum_probs=397.0
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCcccccccee--eeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK--ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d 164 (681)
.++|||+|++|.|+||||..+++++.+|.+...+.++ +++.|++.+|||||||+.+....+.|+++++|+||||||.|
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd 114 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD 114 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence 3689999999999999999999999999888777665 88999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHH----------
Q 005713 165 FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIE---------- 234 (681)
Q Consensus 165 f~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~---------- 234 (681)
|.-++++.++..|+++.|+|++.|+++||..+|+++.++++|.++++||||...++++..++.+++.+..
T Consensus 115 f~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~lpi~ 194 (753)
T KOG0464|consen 115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALKLQLPIG 194 (753)
T ss_pred EEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEeccc
Confidence 9999999999999999999999999999999999999999999999999999999998888877764310
Q ss_pred -----------------h-h-ccc-----------------------------------------------------c--
Q 005713 235 -----------------L-N-ATD-----------------------------------------------------E-- 240 (681)
Q Consensus 235 -----------------l-~-~~~-----------------------------------------------------~-- 240 (681)
+ + ++. +
T Consensus 195 eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~i 274 (753)
T KOG0464|consen 195 EAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDKI 274 (753)
T ss_pred ccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhcccccc
Confidence 0 0 000 0
Q ss_pred ---------------cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCcc-------ccCCceEEEEEEeee
Q 005713 241 ---------------QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI-------EKDGALQMLATNLEY 298 (681)
Q Consensus 241 ---------------~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~-------~~~~p~~~~V~~~~~ 298 (681)
+...|+.++||.++. |+++||+++.-|+|+|.. .....++++.|++.+
T Consensus 275 ~a~elksai~~lt~aq~a~~i~cgsaiknk----------giqplldavtmylpspeernyeflqwykddlcalafkvlh 344 (753)
T KOG0464|consen 275 DAEELKSAIHELTCAQKAAPILCGSAIKNK----------GIQPLLDAVTMYLPSPEERNYEFLQWYKDDLCALAFKVLH 344 (753)
T ss_pred CHHHHHHHHHHHhhhhhhcceehhhhhccc----------CccchhhhhhhccCChhhcchHHHhhhhhhHHHHhhhhhc
Confidence 001589999999988 999999999999999964 234578889999999
Q ss_pred cCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEecccccccCCeeeccCC-
Q 005713 299 DEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVS- 377 (681)
Q Consensus 299 d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~- 377 (681)
|+..|.++|.|||+|+|+++-.|.+.+..-++ .+.+++.....++.+++.+.||+|...+|++...+||||.+...
T Consensus 345 dkqrg~l~fmriysgsi~~~~ai~nin~~~se---~~~kl~~pfade~~~i~qlsagnialt~glk~tatgdtivaskas 421 (753)
T KOG0464|consen 345 DKQRGPLSFMRIYSGSIHNNLAIFNINGMCSE---GILKLFLPFADEHREIEQLSAGNIALTAGLKHTATGDTIVASKAS 421 (753)
T ss_pred ccccCceeEEEEecccccCceeeeeccccccc---chHhhhccchhhhhhhhhcccccEEEEecceeeccCCeEEecchh
Confidence 99999999999999999999999988776655 88899998889999999999999999999999999999965331
Q ss_pred -----------------------CCCCCCCccCCCeeeEEEeecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEEC
Q 005713 378 -----------------------GKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADG 434 (681)
Q Consensus 378 -----------------------~~~l~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~ 434 (681)
...+..+++|+|++.+.++|.+- .+ ..++-.+|.-+..+||+|+|.-+
T Consensus 422 a~aa~qk~~~egekk~~q~~daerll~agie~pd~vffc~iepps~---~k------~~d~ehale~lqredpslkir~d 492 (753)
T KOG0464|consen 422 AEAAAQKAAGEGEKKHLQNKDAERLLFAGIEIPDAVFFCCIEPPSL---RK------LNDFEHALECLQREDPSLKIRFD 492 (753)
T ss_pred HHHHHHHhhccchhhccCCccccceeeecccCCCceEEEeccCccc---cc------chhHHHHHHHHhccCCceeEEec
Confidence 11245689999999999987531 11 24566678888889999999999
Q ss_pred CCCCceEEecccchhhhhHHhhhhhc-ceEEEEcCCeeEEEee-------------------------------------
Q 005713 435 ETADTFIVSGRGTLHITILIENMRRE-GYEFMVGPPKVINKKV------------------------------------- 476 (681)
Q Consensus 435 ~~~~~~~v~g~Gelhl~il~e~lrre-g~e~~~~~P~Vi~~~~------------------------------------- 476 (681)
+++++.++.|+||||++++-.+++|+ |+|.-+++-+|.|||.
T Consensus 493 ~dsgqtil~~~gelhie~ihdrikrey~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velear~~~tqa~i 572 (753)
T KOG0464|consen 493 PDSGQTILCGMGELHIEAIHDRIKREYGLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEARLEETQAHI 572 (753)
T ss_pred CCCCceEEeccchhhHHHHHHHHHhhcCchheehhHHHHHHHHHHHHhhhhhhhhccccccccceEEEEEeeeccccccc
Confidence 99999999999999999999999887 9999999999999970
Q ss_pred --------------------------------------------------------------------------------
Q 005713 477 -------------------------------------------------------------------------------- 476 (681)
Q Consensus 477 -------------------------------------------------------------------------------- 476 (681)
T Consensus 573 p~kkiefe~~es~n~~~l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl~~~~i~~gk~n~alisac~qkcvqealkka 652 (753)
T KOG0464|consen 573 PFKKIEFELAESANEGLLDVSQEAIEEGCHNACLNGPLAGSPIHAVAITLHECIIHGGKINPALISACAQKCVQEALKKA 652 (753)
T ss_pred cceeEEeeccccccchhhhhHHHHHHhhHHHHHhcCCccCCchhheeEeeEEEEecCCcCCHHHHHHHHHHHHHHHHhhh
Confidence
Q ss_pred CCeecCcEEEEEEEecC-CChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeec
Q 005713 477 NDKLLEPYEIATVEVPE-EHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFD 555 (681)
Q Consensus 477 ~g~llEP~~~~~i~vp~-~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~ 555 (681)
+-+++||.|+++|++-. +|+..|+.+|.+|||.+...+...++...+|-+.+|++|+.||...||++|+|.|.|..+|.
T Consensus 653 d~~l~eplm~lei~i~~dd~~qpiladl~qrr~~~e~~~aredneirri~~~lplaei~~~s~~lrtltsg~a~~ale~~ 732 (753)
T KOG0464|consen 653 DKQLLEPLMELEIEIANDDPLQPILADLAQRRAHFEEIDAREDNEIRRICAFLPLAEIEGLSKTLRTLTSGFADFALEFR 732 (753)
T ss_pred hHHHhhhhhheEEEEecCCCccHHHHHHHHhhccchhcccccccchheeeEeeeHHHhhcHHHHHHHHhcccceEEEEec
Confidence 01689999999999977 99999999999999999999876444456799999999999999999999999999999999
Q ss_pred ceeecCC
Q 005713 556 GYGPWAG 562 (681)
Q Consensus 556 ~Y~~~~g 562 (681)
+|+.+..
T Consensus 733 ~yqamn~ 739 (753)
T KOG0464|consen 733 GYQAMNE 739 (753)
T ss_pred chhhcCh
Confidence 9998753
No 20
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=3.6e-57 Score=507.75 Aligned_cols=365 Identities=25% Similarity=0.393 Sum_probs=323.4
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCcccccccee------eeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCC
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK------ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTP 160 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~------~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTP 160 (681)
.++|||+|+||+|+|||||+++|++.++.+...+.+. ..++|+++.|++||+|+......+.|++++++|||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 4789999999999999999999999888876655543 2468999999999999999999999999999999999
Q ss_pred CccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHh-----
Q 005713 161 GHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIEL----- 235 (681)
Q Consensus 161 Gh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l----- 235 (681)
||.||..++.++++.+|++|+|+|+.+|+..+++.+|+.+...++|+++|+||+|+..+++.++++++++.+..-
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~~~~p~~ 167 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIACAPIT 167 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCCCCeeEE
Confidence 999999999999999999999999999999999999999999999999999999998888776777766543210
Q ss_pred ---------------------------h----------c-cc-----------------------------------ccC
Q 005713 236 ---------------------------N----------A-TD-----------------------------------EQC 242 (681)
Q Consensus 236 ---------------------------~----------~-~~-----------------------------------~~~ 242 (681)
+ . ++ ...
T Consensus 168 ~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~~~~~ 247 (526)
T PRK00741 168 WPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEAFLAGE 247 (526)
T ss_pred eccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHHhcCC
Confidence 0 0 00 001
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccc---------cCCceEEEEEEeee---cCCCceEEEEEe
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIE---------KDGALQMLATNLEY---DEHKGRIAIGRL 310 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~---------~~~p~~~~V~~~~~---d~~~G~v~~grV 310 (681)
-+||+++||++|+ |+.+||+.|++++|+|... .+.+|.++|||+.. +++.|+++++||
T Consensus 248 ~~PV~~GSA~~n~----------Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~grlafvRV 317 (526)
T PRK00741 248 LTPVFFGSALNNF----------GVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRDRIAFVRV 317 (526)
T ss_pred eEEEEEeecccCc----------CHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCceEEEEEE
Confidence 2799999999999 9999999999999999531 24579999999984 569999999999
Q ss_pred ecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEecccccccCCeeeccCCCCCCCCCccCCCe
Q 005713 311 HAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPT 390 (681)
Q Consensus 311 ~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~P~ 390 (681)
+||++++|+.|++..+++++ ||.+++.+.|.++.++++|.|||||++.|++++++|||||+.+ +..++++++++|+
T Consensus 318 ~sG~l~~g~~v~~~~~~k~~---ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~~~GDTL~~~~-~~~~~~i~~~~P~ 393 (526)
T PRK00741 318 CSGKFEKGMKVRHVRTGKDV---RISNALTFMAQDREHVEEAYAGDIIGLHNHGTIQIGDTFTQGE-KLKFTGIPNFAPE 393 (526)
T ss_pred eccEECCCCEEEeccCCceE---EecceEEEecCCceECceeCCCCEEEEECCCCCccCCCccCCC-ccccCCCCCCCcc
Confidence 99999999999999988776 9999999999999999999999999999999999999999866 5667889999999
Q ss_pred eeEEEeecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHHhhhhhc-ceEEEEcCC
Q 005713 391 VKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENMRRE-GYEFMVGPP 469 (681)
Q Consensus 391 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~e~lrre-g~e~~~~~P 469 (681)
+++++.+.+ ..+ .+++.++|.++.++| ++++..++++++++++|+|+|||+|+++||+++ |+++.+++|
T Consensus 394 ~~~~v~p~~----~~d-----~~kl~~aL~~L~eED-~l~~~~~~~t~e~il~g~G~lhleV~~~RL~~ey~v~v~~~~~ 463 (526)
T PRK00741 394 LFRRVRLKN----PLK-----QKQLQKGLVQLSEEG-AVQVFRPLDNNDLILGAVGQLQFEVVAHRLKNEYNVEAIYEPV 463 (526)
T ss_pred EEEEEEECC----chh-----HHHHHHHHHHHhhcC-CeEEEECCCCCCEEEEEEeHHHHHHHHHHHHHHhCCEEEEecC
Confidence 999999875 223 589999999999999 599999999999999999999999999999886 999999999
Q ss_pred eeEEEe
Q 005713 470 KVINKK 475 (681)
Q Consensus 470 ~Vi~~~ 475 (681)
+|++..
T Consensus 464 ~v~~~r 469 (526)
T PRK00741 464 GVATAR 469 (526)
T ss_pred CccEEE
Confidence 988653
No 21
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=2.2e-56 Score=501.56 Aligned_cols=365 Identities=22% Similarity=0.349 Sum_probs=322.9
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCcccccccee------eeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeC
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK------ERIMDSNDLERERGITILSKNTSITYNDTKINIIDT 159 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~------~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDT 159 (681)
..++|||+|+||+|+|||||+++|+...+.+...+.+. .+++|+++.|++||+|+.+....+.|+++.++||||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 45799999999999999999999999888776655543 478999999999999999999999999999999999
Q ss_pred CCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHh----
Q 005713 160 PGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIEL---- 235 (681)
Q Consensus 160 PGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l---- 235 (681)
|||.+|..++.++++.+|++|+|||+.+|+..++..+|+.+...++|+++|+||+|+..++++++++++++.+...
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~~~~~~ 167 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKINCAPI 167 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCCCCccE
Confidence 9999999999999999999999999999999999999999998999999999999998777766666666543210
Q ss_pred -------------------------h---c-----------c-----------------------------------ccc
Q 005713 236 -------------------------N---A-----------T-----------------------------------DEQ 241 (681)
Q Consensus 236 -------------------------~---~-----------~-----------------------------------~~~ 241 (681)
. . . ...
T Consensus 168 ~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~ 247 (527)
T TIGR00503 168 TWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAFHGG 247 (527)
T ss_pred EEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccccCHHHHhcC
Confidence 0 0 0 000
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccc---------cCCceEEEEEEeee--c-CCCceEEEEE
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIE---------KDGALQMLATNLEY--D-EHKGRIAIGR 309 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~---------~~~p~~~~V~~~~~--d-~~~G~v~~gr 309 (681)
.-+||+++||.++. |+.+||+.+++++|+|... .+.+|.++|||+.. | ++.|+++|+|
T Consensus 248 ~~~PV~~GSA~~n~----------Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~griaf~R 317 (527)
T TIGR00503 248 EMTPVFFGTALGNF----------GVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRDRVAFMR 317 (527)
T ss_pred CeeEEEEeecccCc----------cHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCceEEEEE
Confidence 12699999999999 9999999999999999632 24689999999988 7 5999999999
Q ss_pred eecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEecccccccCCeeeccCCCCCCCCCccCCC
Q 005713 310 LHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEP 389 (681)
Q Consensus 310 V~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~P 389 (681)
|+||++++|+.|++..+++++ ||.+++.+.|.++.++++|.|||||++.|++++++|||||+.+ +..++++++++|
T Consensus 318 V~sG~l~~g~~v~~~~~~k~~---ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~~~GDtl~~~~-~~~~~~i~~~~P 393 (527)
T TIGR00503 318 VVSGKYEKGMKLKHVRTGKDV---VISDALTFMAGDREHVEEAYAGDIIGLHNHGTIQIGDTFTQGE-KIKFTGIPNFAP 393 (527)
T ss_pred EeeeEEcCCCEEEecCCCCcE---EecchhhhhcCCceEcceeCCCCEEEEECCCCcccCCEecCCC-ceeecCCCCCCc
Confidence 999999999999999988876 9999999999999999999999999999999999999999844 566788889999
Q ss_pred eeeEEEeecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHHhhhhhc-ceEEEEcC
Q 005713 390 TVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENMRRE-GYEFMVGP 468 (681)
Q Consensus 390 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~e~lrre-g~e~~~~~ 468 (681)
++++++.+.+ ..+ .+++.++|.++.++|+ +++..++++++++++|+|+|||+|++++|+++ |+++.+++
T Consensus 394 ~~~~~v~~~~----~~d-----~~kl~~aL~~L~eED~-l~v~~~~~t~e~il~g~GelhleV~~~RL~~ey~v~v~~~~ 463 (527)
T TIGR00503 394 ELFRRIRLKD----PLK-----QKQLLKGLVQLSEEGA-VQVFRPLDNNDLIVGAVGVLQFDVVVYRLKEEYNVEARYEP 463 (527)
T ss_pred ceEEEEEECC----hhh-----HHHHHHHHHHHHhhCC-eEEEEcCCCCCEEEEEEeHHHHHHHHHHHHHHhCCeEEEeC
Confidence 9999999875 223 6899999999999997 99999999999999999999999999999876 99999999
Q ss_pred CeeEEE
Q 005713 469 PKVINK 474 (681)
Q Consensus 469 P~Vi~~ 474 (681)
|+|+..
T Consensus 464 ~~v~~~ 469 (527)
T TIGR00503 464 VNVATA 469 (527)
T ss_pred CCceEE
Confidence 998754
No 22
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.8e-57 Score=472.52 Aligned_cols=476 Identities=26% Similarity=0.415 Sum_probs=385.7
Q ss_pred hhhccCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEee-----------
Q 005713 81 SRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY----------- 149 (681)
Q Consensus 81 ~~~~~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~----------- 149 (681)
..|....++||+.+|+|+|||||||.+.|....+.+......+.+++|+.+.|++|||||.+..+++.+
T Consensus 11 ~lM~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k 90 (842)
T KOG0469|consen 11 ELMDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIK 90 (842)
T ss_pred HHhccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhc
Confidence 455667789999999999999999999999999988866677789999999999999999998888754
Q ss_pred -----CCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccc
Q 005713 150 -----NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYV 224 (681)
Q Consensus 150 -----~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~ 224 (681)
.+.-||+||.|||.||..++..+++..|++|+|||+.+|+..||+.+++++....+..++|+||+|+.--+.+..
T Consensus 91 ~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~ 170 (842)
T KOG0469|consen 91 QEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLS 170 (842)
T ss_pred CCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhhcCC
Confidence 246799999999999999999999999999999999999999999999999999999999999999853333333
Q ss_pred hhhHHHHHHHhhcc---------cccC--------CceEEEeecccCCCCC-----------------------------
Q 005713 225 INSTFELFIELNAT---------DEQC--------DFQAIYASGIQGKAGL----------------------------- 258 (681)
Q Consensus 225 ~~ei~~~~~~l~~~---------~~~~--------~~pvi~~SA~~G~~~~----------------------------- 258 (681)
.+++.+.|...-.. +..+ .-.+-|+|+++||+..
T Consensus 171 ~EeLyqtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f 250 (842)
T KOG0469|consen 171 QEELYQTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFF 250 (842)
T ss_pred HHHHHHHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhccccc
Confidence 44444444322110 0000 1135678888888731
Q ss_pred CCCC------------------------------------------------------------------------CCCC
Q 005713 259 SPDN------------------------------------------------------------------------LADD 266 (681)
Q Consensus 259 ~~~~------------------------------------------------------------------------~~~g 266 (681)
++.. +...
T Consensus 251 ~~ktkk~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~wLPA 330 (842)
T KOG0469|consen 251 NPKTKKWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRKWLPA 330 (842)
T ss_pred CccCCcccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHHHHHHHhcch
Confidence 0000 0001
Q ss_pred cchhHHHHHhhCCCCc-------------------------cccCCceEEEEEEeeecCCCc-eEEEEEeecccccCCCE
Q 005713 267 LGPLFESIMRCIPGPR-------------------------IEKDGALQMLATNLEYDEHKG-RIAIGRLHAGVLRKGME 320 (681)
Q Consensus 267 i~~Ll~~I~~~lp~p~-------------------------~~~~~p~~~~V~~~~~d~~~G-~v~~grV~sG~lk~gd~ 320 (681)
-+.||+.|.-++|+|. +|+++|+.|+|++.....-.| ..++|||++|++..|++
T Consensus 331 adallemIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~v~~G~K 410 (842)
T KOG0469|consen 331 ADALLEMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVFTGLK 410 (842)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeeeecceeccCcE
Confidence 1357888888999983 578999999999988766666 57999999999999999
Q ss_pred EEEccCCC----ce--eeeEEEeEEEeeccceeecceecCCCEEEEeccccc-ccCCeeeccCCCCCCCCCccC-CCeee
Q 005713 321 VRVCTSED----SC--RYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDI-QIGETIADKVSGKPLPSIKVE-EPTVK 392 (681)
Q Consensus 321 v~~~~~~~----~~--~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~-~~Gdtl~~~~~~~~l~~~~~~-~P~~~ 392 (681)
+++...+- +. ....|..-..+.|...++++.+.||+|+++.|+++. ..+-||+..+...-+...+++ .|++.
T Consensus 411 vRiqgPnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e~AHNmrvMKFSVSPVV~ 490 (842)
T KOG0469|consen 411 VRIQGPNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSEAAHNMRVMKFSVSPVVR 490 (842)
T ss_pred EEEeCCCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceeehhhhccceEEEeeccceEE
Confidence 99976651 10 000122222357899999999999999999999874 336688876655445555543 58999
Q ss_pred EEEeecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHHhhhhhc--ceEEEEcCCe
Q 005713 393 MSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENMRRE--GYEFMVGPPK 470 (681)
Q Consensus 393 ~~~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~e~lrre--g~e~~~~~P~ 470 (681)
+++++.. +.| -.||.|.|.|++..||...+..++ .++.++.|-|||||+|++.+|... ++.+..+.|-
T Consensus 491 VAVe~Kn----p~D-----LpKLvEGLkrLakSDP~v~~~~~e-sGehiiAgaGeLHLEICLkDLeedhA~iPlk~sdPv 560 (842)
T KOG0469|consen 491 VAVEAKN----PAD-----LPKLVEGLKRLAKSDPMVQCIIEE-SGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPV 560 (842)
T ss_pred EEEecCC----hhh-----hHHHHHHHHHHhccCCeEEEEecc-CCceEEeccchhhHHHHHhhHhhcccCCceecCCCe
Confidence 9998865 333 579999999999999999888875 566889999999999999999865 8999999999
Q ss_pred eEEEe---------------------------------------------------------------------------
Q 005713 471 VINKK--------------------------------------------------------------------------- 475 (681)
Q Consensus 471 Vi~~~--------------------------------------------------------------------------- 475 (681)
|.|+|
T Consensus 561 VsYrEtvs~~ss~~~lsKSpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKIWCfgPd~ 640 (842)
T KOG0469|consen 561 VSYRETVSEESSQTCLSKSPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKIWCFGPDG 640 (842)
T ss_pred eeeecccccccchhhhccCCcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCchhhhheeeEeCCCC
Confidence 99998
Q ss_pred -------------------------------------------------------------------------------e
Q 005713 476 -------------------------------------------------------------------------------V 476 (681)
Q Consensus 476 -------------------------------------------------------------------------------~ 476 (681)
+
T Consensus 641 tg~Nll~D~TK~vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~ya~~l~A 720 (842)
T KOG0469|consen 641 TGPNLLVDQTKGVQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVLYASVLTA 720 (842)
T ss_pred CCCcEEEecchhhHHHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhhcCCCeechHHHHHHHHHHHhc
Confidence 0
Q ss_pred CCeecCcEEEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecc
Q 005713 477 NDKLLEPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDG 556 (681)
Q Consensus 477 ~g~llEP~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~ 556 (681)
+++++||+|.|+|.||++++|.|++.|+++||.+.+.+...+.....+++++|+.|.+||..+||+.|+|++.-++.|+|
T Consensus 721 ~P~l~EPvylvEIq~pe~avGgiy~vLn~kRG~v~~e~q~~Gtp~f~vkayLPVnESFgFt~dLrs~t~GqAfpq~vFdH 800 (842)
T KOG0469|consen 721 GPILQEPVYLVEIQCPEQAVGGIYGVLNRKRGHVFEEEQVPGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQMVFDH 800 (842)
T ss_pred CceecCceEEEEEeCchhhhchhhheeeccccceecccccCCCcceEEEEEeecccccccchhhhcccCCccccceeeec
Confidence 12799999999999999999999999999999999998876667899999999999999999999999999999999999
Q ss_pred eeecCCCCCC
Q 005713 557 YGPWAGDIST 566 (681)
Q Consensus 557 Y~~~~g~~~~ 566 (681)
|+..+|+...
T Consensus 801 ws~lpgdp~d 810 (842)
T KOG0469|consen 801 WSILPGDPLD 810 (842)
T ss_pred cccCCCCCCC
Confidence 9999998743
No 23
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.2e-48 Score=415.87 Aligned_cols=480 Identities=25% Similarity=0.350 Sum_probs=377.3
Q ss_pred hHHHHhhhccCCCccEEEEEeCCCCcHHHHHHHHHhhcCccc-cccceeeeeeccchhhcccceeEEeeeeEEeeC----
Q 005713 76 AAEKKSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFR-DNQTVKERIMDSNDLERERGITILSKNTSITYN---- 150 (681)
Q Consensus 76 ~~~~~~~~~~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~-~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---- 150 (681)
.......+..+..+|||+++||-+||||+|++.|..++.... .+....-++.|....|++||++|.+....+-..
T Consensus 115 ~~yl~~l~~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~ 194 (971)
T KOG0468|consen 115 LEYLAGLMDNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKG 194 (971)
T ss_pred HHHHHHhccCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcC
Confidence 445556777888999999999999999999999999877322 222223589999999999999999988877654
Q ss_pred -CeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCC----c----
Q 005713 151 -DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSAR----P---- 221 (681)
Q Consensus 151 -~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~----~---- 221 (681)
.+-+||+|||||.+|..|+..+++.+|+++||||+.+|++-+|...++.+.+.++|+++|+||+|+..-+ +
T Consensus 195 KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY 274 (971)
T KOG0468|consen 195 KSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAY 274 (971)
T ss_pred ceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChHHHH
Confidence 4679999999999999999999999999999999999999999999999999999999999999975211 1
Q ss_pred ---ccchhhHHHHHHHhhccccc----CCceEEEeecccCCCCC------------------CC----------------
Q 005713 222 ---DYVINSTFELFIELNATDEQ----CDFQAIYASGIQGKAGL------------------SP---------------- 260 (681)
Q Consensus 222 ---~~~~~ei~~~~~~l~~~~~~----~~~pvi~~SA~~G~~~~------------------~~---------------- 260 (681)
..+++++..++..+...+.. ..-.++|.|.+.|+... +.
T Consensus 275 ~KLrHii~~iN~~is~~s~~~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~~ktrk 354 (971)
T KOG0468|consen 275 YKLRHIIDEINNLISTFSKDDNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHSKTRK 354 (971)
T ss_pred HHHHHHHHHhcchhhhcccccccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhccccccccccc
Confidence 12333333333332222111 11235566665554310 00
Q ss_pred ------C--------------------------------------------CCCCCcch---------------hHHHHH
Q 005713 261 ------D--------------------------------------------NLADDLGP---------------LFESIM 275 (681)
Q Consensus 261 ------~--------------------------------------------~~~~gi~~---------------Ll~~I~ 275 (681)
+ ...-+..+ +.+++.
T Consensus 355 F~kk~~~~~~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~lvc~~ffg~~sgfvd~~v 434 (971)
T KOG0468|consen 355 FVKKPPDGSGSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLRLVCKSFFGIESGFVDMPV 434 (971)
T ss_pred cccCCCCCcccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHHHHHHHhccchhhhhHhhH
Confidence 0 00112222 456677
Q ss_pred hhCCCCc-------------------------cccCCceEEEEEEeee-cCCCceEEEEEeecccccCCCEEEEccCC--
Q 005713 276 RCIPGPR-------------------------IEKDGALQMLATNLEY-DEHKGRIAIGRLHAGVLRKGMEVRVCTSE-- 327 (681)
Q Consensus 276 ~~lp~p~-------------------------~~~~~p~~~~V~~~~~-d~~~G~v~~grV~sG~lk~gd~v~~~~~~-- 327 (681)
+++|+|. ++.++|+.+.+.+.+. ++..-..++|||+||+++.|+.|.+...+
T Consensus 435 ~hi~sP~e~a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~~~~q~V~vlgeny~ 514 (971)
T KOG0468|consen 435 EHIPSPRENAARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTGQDVRVLGENYS 514 (971)
T ss_pred hhcCChhhhhccccceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeeecceeecceeeEeecccc
Confidence 8888884 3557899999998876 44556789999999999999999998765
Q ss_pred ----CceeeeEEEeEEEeeccceeecceecCCCEEEEecccc-cccCCeeeccCCC---CCCCCCc-cCCCeeeEEEeec
Q 005713 328 ----DSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDD-IQIGETIADKVSG---KPLPSIK-VEEPTVKMSFSIN 398 (681)
Q Consensus 328 ----~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~-~~~Gdtl~~~~~~---~~l~~~~-~~~P~~~~~~~~~ 398 (681)
+......|..|+.+.+..+.+|++|.||.+|.|.|+++ +....||++.+.. .-++++. ...|++.++++|-
T Consensus 515 leDEeD~~~~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFrpl~~~t~~VvKiaveP~ 594 (971)
T KOG0468|consen 515 LEDEEDMVICEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLKFNTEPVVKVAVEPL 594 (971)
T ss_pred CCCcccceeeeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeeccchhcCCcceEEEEeccC
Confidence 22334689999999999999999999999999999985 4447888875432 3345554 6789999999864
Q ss_pred CCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHHhhhhhc--ceEEEEcCCeeEEEee
Q 005713 399 TSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENMRRE--GYEFMVGPPKVINKKV 476 (681)
Q Consensus 399 ~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~e~lrre--g~e~~~~~P~Vi~~~~ 476 (681)
+ ..| -.|+.++|.+....-|.+... -++.++..+.|-|||.|+.++.+||.. -+|+.++.|-|.|-|.
T Consensus 595 n----PsE-----LPKmldgLrKinKsYPl~~tk-VEESGEHvilGtGElYmDcvlyDLR~~yseieikvaDPvv~F~Et 664 (971)
T KOG0468|consen 595 N----PSE-----LPKMLDGLRKINKSYPLVITK-VEESGEHVILGTGELYMDCVLYDLRKSYSEIEIKVADPVVRFCET 664 (971)
T ss_pred C----hhh-----hhHHHHHHHhhcccCCcEEEe-hhhcCceEEecCchhhHHHHHHHHHHHHhhhceeecCceeEEEEe
Confidence 4 333 479999999998887765433 345677899999999999999999985 6889999998888760
Q ss_pred --------------------------------------------------------------------------------
Q 005713 477 -------------------------------------------------------------------------------- 476 (681)
Q Consensus 477 -------------------------------------------------------------------------------- 476 (681)
T Consensus 665 ~vetssikcfaetpnkknkItmiaEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFgpd~~GpNiL 744 (971)
T KOG0468|consen 665 VVETSSIKCFAETPNKKNKITMIAEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFGPDYTGPNIL 744 (971)
T ss_pred eecccchhhhccCCCccCceeeeechhhhhhhHHhhcCeEEeccchhhhhhhhhcccchhhhhhcceeccCCCCCCCcee
Confidence
Q ss_pred ------------------------------------------------------------------------------CC
Q 005713 477 ------------------------------------------------------------------------------ND 478 (681)
Q Consensus 477 ------------------------------------------------------------------------------~g 478 (681)
.+
T Consensus 745 ~dDTLp~evdk~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~YsafL~AtP 824 (971)
T KOG0468|consen 745 LDDTLPTEVDKNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVAYSAFLMATP 824 (971)
T ss_pred ecCcCcchhhHHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCccccccCCCccchHHHHHHHHHHHhhch
Confidence 01
Q ss_pred eecCcEEEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeeccee
Q 005713 479 KLLEPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYG 558 (681)
Q Consensus 479 ~llEP~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~ 558 (681)
.||||+|.|+|.+|.+.+..|.+.|++|||++..-.+..++-...+.+.+|+.+.+||.++||..|+|+|.+.+.|+||+
T Consensus 825 rLmEP~Y~VEi~apad~v~~Vy~vl~rRRGhV~~d~p~pGSPly~v~a~iPvieSfGFETDLR~hTqGqa~C~~vF~HW~ 904 (971)
T KOG0468|consen 825 RLMEPVYLVEITAPADCVPAVYTVLSRRRGHVTQDIPVPGSPLYTVKAYLPVIESFGFETDLRVHTQGQAFCLSVFDHWR 904 (971)
T ss_pred hhcCceEEEEEecccchHHHHHHHHHhhcCceeecCCCCCCchhheeeecccccccCcccceeeeccchhHHHHhhhhcc
Confidence 68999999999999999999999999999999988776556678899999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 005713 559 PWAGDIS 565 (681)
Q Consensus 559 ~~~g~~~ 565 (681)
++||+.-
T Consensus 905 ~VPGDpL 911 (971)
T KOG0468|consen 905 IVPGDPL 911 (971)
T ss_pred cCCCCcc
Confidence 9999853
No 24
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-46 Score=390.96 Aligned_cols=356 Identities=24% Similarity=0.390 Sum_probs=303.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCcccccccee------eeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCC
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK------ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPG 161 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~------~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPG 161 (681)
+.|+.|||.|+|+|||||.+.||...+++...+++. ....|+++.|++|||++.++...|.|+++.+||+||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 568999999999999999999999998888777765 45789999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHH-------
Q 005713 162 HSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIE------- 234 (681)
Q Consensus 162 h~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~------- 234 (681)
|+||...+.+.|..+|.||.||||..|+.+||+.+++-|+-+++|++-++||+|+...++-+.++++.+.+.=
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~PitW 170 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAPITW 170 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCcceecccc
Confidence 9999999999999999999999999999999999999999999999999999999998998999998875420
Q ss_pred -hhcc-----------------------------------c-----------------------------------ccCC
Q 005713 235 -LNAT-----------------------------------D-----------------------------------EQCD 243 (681)
Q Consensus 235 -l~~~-----------------------------------~-----------------------------------~~~~ 243 (681)
++.. . ....
T Consensus 171 PIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl~G~~ 250 (528)
T COG4108 171 PIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFLAGEL 250 (528)
T ss_pred cccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHhcCCc
Confidence 0000 0 0001
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCcc---------ccCCceEEEEEEeee--c-CCCceEEEEEee
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI---------EKDGALQMLATNLEY--D-EHKGRIAIGRLH 311 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~---------~~~~p~~~~V~~~~~--d-~~~G~v~~grV~ 311 (681)
.|||++||+++. |++.+|+.++++.|+|.. ..+..|..+|||+.. | .+..||++.||.
T Consensus 251 TPVFFGSAl~NF----------GV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRDRIAFmRv~ 320 (528)
T COG4108 251 TPVFFGSALGNF----------GVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRDRIAFMRVC 320 (528)
T ss_pred cceEehhhhhcc----------CHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCcccccceeEEEec
Confidence 599999999999 999999999999999963 234569999999865 3 467799999999
Q ss_pred cccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEecccccccCCeeeccCCCCCCCCCccCCCee
Q 005713 312 AGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPTV 391 (681)
Q Consensus 312 sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~P~~ 391 (681)
||.+..|+++....+++.. +++.-..|.+..++.+++|.|||||+|..-..+++|||++..+. ..+++++.-.|-+
T Consensus 321 SGkferGMkv~h~rtGK~~---~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~~IGDT~t~Ge~-l~f~giP~FaPE~ 396 (528)
T COG4108 321 SGKFERGMKVTHVRTGKDV---KLSDALTFMAQDRETVEEAYAGDIIGLHNHGTIQIGDTFTEGEK-LKFTGIPNFAPEL 396 (528)
T ss_pred cccccCCceeeeeecCCce---EecchHhhhhhhhhhhhhccCCCeEeccCCCceeecceeecCce-eeecCCCCCCHHH
Confidence 9999999999999999987 88888889999999999999999999977668999999998743 3445554445666
Q ss_pred eEEEeecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHHhhhhhc-ceEEEEc
Q 005713 392 KMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENMRRE-GYEFMVG 467 (681)
Q Consensus 392 ~~~~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~e~lrre-g~e~~~~ 467 (681)
.+.+...+ | +...+++++|.++.++-+ +++-....++..+++..|.||++|+.+||+.| |+|+...
T Consensus 397 frrvr~kd-~--------~K~Kql~Kgl~QL~eEGa-vQ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~EY~ve~~~e 463 (528)
T COG4108 397 FRRVRLKD-P--------LKQKQLKKGLEQLAEEGA-VQVFKPLDGNDLILGAVGQLQFEVVQARLKNEYNVEAVFE 463 (528)
T ss_pred HHHHhcCC-h--------HHHHHHHHHHHHHhhcCe-eEEEecCCCCCceEEeeeeeehHHHHHHHHhhhCCeEEEe
Confidence 67666543 2 235789999999999885 55555556678999999999999999999987 8886544
No 25
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.6e-45 Score=399.62 Aligned_cols=468 Identities=25% Similarity=0.369 Sum_probs=371.3
Q ss_pred ccCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCcc
Q 005713 84 MRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS 163 (681)
Q Consensus 84 ~~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~ 163 (681)
+..+.+|||++++|+|||||||++.|+...+.+...-...-++||+.+.|+.||||..+...+...+++.+|+||+|||.
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 34568999999999999999999999999998877766678999999999999999999999998899999999999999
Q ss_pred chhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCC----CCcccch-------hhHHHHH
Q 005713 164 DFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS----ARPDYVI-------NSTFELF 232 (681)
Q Consensus 164 df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~----~~~~~~~-------~ei~~~~ 232 (681)
||.+++.++.+.+|+++++||+.+|+..||..+++++...+..+|+|+||||+.. ..+.+.. +++....
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~vn~~i 163 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRVIEQVNGVI 163 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHHHhhhHH
Confidence 9999999999999999999999999999999999999999999999999999652 2222222 2222221
Q ss_pred HHh-----------------hcccccCCceEEEeecccCCCCCCC-----------------------------C-----
Q 005713 233 IEL-----------------NATDEQCDFQAIYASGIQGKAGLSP-----------------------------D----- 261 (681)
Q Consensus 233 ~~l-----------------~~~~~~~~~pvi~~SA~~G~~~~~~-----------------------------~----- 261 (681)
..+ ...-+.-+-.+++.||..||++... +
T Consensus 164 ~~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k~lwgd~y~~~ktk~I~ 243 (887)
T KOG0467|consen 164 GQFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLKFLWGDRYIDPKTKRIC 243 (887)
T ss_pred HHhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhhhhhccceeecchhhhhh
Confidence 100 0000112345899999999874100 0
Q ss_pred ------CC--------------------CCC--------------------cchhHHHH---------------HhhCCC
Q 005713 262 ------NL--------------------ADD--------------------LGPLFESI---------------MRCIPG 280 (681)
Q Consensus 262 ------~~--------------------~~g--------------------i~~Ll~~I---------------~~~lp~ 280 (681)
.. ... +..+++++ +.++|.
T Consensus 244 ~~~~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~~ll~~im~~wLPls~avll~a~~~lp~ 323 (887)
T KOG0467|consen 244 EGKKLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLRNLLDAIMSTWLPLSDAVLLTVVYKLPD 323 (887)
T ss_pred cccCcccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHHHHHHHHHHhhcccccchHHHHHHhcCC
Confidence 00 000 01122222 233444
Q ss_pred Cc----------------------------cccCCceEEEEEEeeecC-----CCceEEEEEeecccccCCCEEEEccCC
Q 005713 281 PR----------------------------IEKDGALQMLATNLEYDE-----HKGRIAIGRLHAGVLRKGMEVRVCTSE 327 (681)
Q Consensus 281 p~----------------------------~~~~~p~~~~V~~~~~d~-----~~G~v~~grV~sG~lk~gd~v~~~~~~ 327 (681)
|. ++.++|..++|.+....+ ...-++++||++|+++.||.|++...+
T Consensus 324 pl~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~~~ari~sgTlr~g~~v~v~~pd 403 (887)
T KOG0467|consen 324 PIRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLLAFARIFSGTLRVGQVVYVLGPD 403 (887)
T ss_pred HHHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchhhheeeeeeccCceeeccEeeecCCC
Confidence 31 234678888888876543 222579999999999999999997663
Q ss_pred ----CceeeeEEEeEEEeeccceeecceecCCCEEEEecccccccCCeeeccCCCCCCCCC-ccCCCeeeEEEeecCCCC
Q 005713 328 ----DSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPSI-KVEEPTVKMSFSINTSPF 402 (681)
Q Consensus 328 ----~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~-~~~~P~~~~~~~~~~~~~ 402 (681)
..+...+|.++|.+.|...++.+++.+|++++|.|-+.+...-|+|+.....++-.. .--.|.+.|++++.+ |
T Consensus 404 ~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g~~~vlks~TL~s~~~~~p~~~~~f~~tp~vrvaiep~~-p- 481 (887)
T KOG0467|consen 404 PLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGGAGIVLKSATLCSKVPCGPNLVVNFQITPIVRVAIEPDD-P- 481 (887)
T ss_pred CCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecccceEeccceecccCCCcceeeeeeeeeeEEEEEeecCC-h-
Confidence 124457999999999999999999999999999884445567789886433332222 224688999998754 2
Q ss_pred CcccCccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHHhhhhh-cceEEEEcCCeeEEEee-----
Q 005713 403 VGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENMRR-EGYEFMVGPPKVINKKV----- 476 (681)
Q Consensus 403 ~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~e~lrr-eg~e~~~~~P~Vi~~~~----- 476 (681)
.+ ..++.+.|.-+...|+++++..++ .++..+...||+||+-++.+|+. .++++.+++|.|+|+|.
T Consensus 482 --~e-----m~~L~~glkll~~adp~v~i~v~~-~gEhvl~~aGevhlerc~kDL~efa~i~i~vSeP~vpfrET~~e~s 553 (887)
T KOG0467|consen 482 --DE-----MDKLVEGLKLLNQADPFVKIRVEE-NGEHVLVTAGEVHLERCLKDLKEFAKIEISVSEPLVPFRETIIEDS 553 (887)
T ss_pred --HH-----hHHHHHHHHhhcccchhhHHHHhh-ccceeeeeccHHHHHHHHHHHhhhhceEEEecCCccchhhhccccc
Confidence 23 578888888888899999887654 56788889999999999999998 69999999999999860
Q ss_pred --------------------------------------------------------------------------------
Q 005713 477 -------------------------------------------------------------------------------- 476 (681)
Q Consensus 477 -------------------------------------------------------------------------------- 476 (681)
T Consensus 554 ~l~~~~~I~~~~~~~~~~~~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~k~~~~e~ls~~~s~~~~~~ 633 (887)
T KOG0467|consen 554 DLLANLSIGQETKCLPRGQLKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQKGSFEENLSLLISLERLYE 633 (887)
T ss_pred hhhhhhhcCcccccccccceeEEeeecccccceeccccccchhccchhccccccccccccccccccccccHHHHHHHHhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 005713 477 -------------------------------------------------------------------------------- 476 (681)
Q Consensus 477 -------------------------------------------------------------------------------- 476 (681)
T Consensus 634 ~ek~~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~l~~~ivsgfql~~~sGPlc~Ep~~g~~~~~es 713 (887)
T KOG0467|consen 634 FEKPREKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVARLSESIVSGFQLATSSGPLCNEPMQGICFVLES 713 (887)
T ss_pred ccccHHHHHHHHhhhhcccccccCCceeeccccchhhhhhhcchHHHHHHHHHhhhHhhhhccCcccccCcccEEEEeec
Confidence
Q ss_pred ---C---------C-------------------eecCcEEEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEE
Q 005713 477 ---N---------D-------------------KLLEPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLK 525 (681)
Q Consensus 477 ---~---------g-------------------~llEP~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~ 525 (681)
+ | +++.|||.+.|.+-.|++|+|+..|++|+|+|++.+...+++...++
T Consensus 714 ~~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR~gkVLsEem~EgT~~F~V~ 793 (887)
T KOG0467|consen 714 GSAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKRHGKVLSEEMKEGTGFFIVT 793 (887)
T ss_pred cCcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhhhhcchhhhhhhhCCCCcEEEE
Confidence 0 0 58999999999999999999999999999999998877677899999
Q ss_pred EEeechhhcchHHHHhhcCcceEEEEeeecceeecC
Q 005713 526 YKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWA 561 (681)
Q Consensus 526 ~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 561 (681)
+.+|+.|.+||+.|+|--|+|.|+.++.|+||+-..
T Consensus 794 aliPVvESFgFadeiRK~TSG~A~pQLvFShwEvId 829 (887)
T KOG0467|consen 794 ALIPVVESFGFADEIRKGTSGAASPQLVFSHWEVID 829 (887)
T ss_pred EEeeeeccccHHHHHhhccccccchhhhccccEEec
Confidence 999999999999999999999999999999999874
No 26
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.5e-42 Score=356.96 Aligned_cols=285 Identities=25% Similarity=0.323 Sum_probs=246.7
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCcccccc---------------ceeeeeeccchhhcccceeEEeeeeEEeeC
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQ---------------TVKERIMDSNDLERERGITILSKNTSITYN 150 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~---------------~~~~~~~D~~~~E~erGiTi~~~~~~~~~~ 150 (681)
.....|++++||+|||||||+.+|+++.|.+.... ..-.|+||..++|||||+|++.....|+.+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 34678999999999999999999999998765321 112789999999999999999999999999
Q ss_pred CeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCC-------CchhhHHHHHHHHHcCCE-EEEEEeecCCCCC---
Q 005713 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-------PMPQTRFVLKKALEFGHA-VVVVVNKIDRPSA--- 219 (681)
Q Consensus 151 ~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g-------~~~qt~~~l~~~~~~gip-~ivviNKiD~~~~--- 219 (681)
.+.++|+|||||.||...+....+.||.+||||||..+ +..||++|+.+++.+|+. +||++||||..++
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~ 163 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEE 163 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHH
Confidence 99999999999999999999999999999999999988 889999999999999974 8999999999865
Q ss_pred CcccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCC-CCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeee
Q 005713 220 RPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPD-NLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEY 298 (681)
Q Consensus 220 ~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~-~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~ 298 (681)
+++++.+++..+++.++.... +++|+++||.+|.|+.+.. ...|.-.+.|..-++.+.+|....+.||++.|.+++.
T Consensus 164 rf~ei~~~v~~l~k~~G~~~~--~v~FIPiSg~~G~Nl~~~s~~~pWY~GpTLleaLd~~~~p~~~~d~Plr~pI~~v~~ 241 (428)
T COG5256 164 RFEEIVSEVSKLLKMVGYNPK--DVPFIPISGFKGDNLTKKSENMPWYKGPTLLEALDQLEPPERPLDKPLRLPIQDVYS 241 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCcc--CCeEEecccccCCcccccCcCCcCccCChHHHHHhccCCCCCCCCCCeEeEeeeEEE
Confidence 467788888887777776543 6899999999999987765 3445545544444568888988899999999999999
Q ss_pred cCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEE--ecc--cccccCCeeec
Q 005713 299 DEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI--DDIQIGETIAD 374 (681)
Q Consensus 299 d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~gl--~~~~~Gdtl~~ 374 (681)
..+.|++.+|||.+|.|++||.|++.|.+... .|++|. .++.+++.|.|||.|.+ .|+ +|++.||++++
T Consensus 242 i~~~gtv~vGrVEsG~i~~g~~v~~~p~~~~~---evksie----~~~~~~~~a~~GD~i~~~vrgv~~~dI~~Gdv~~~ 314 (428)
T COG5256 242 ISGIGTVPVGRVESGVIKPGQKVTFMPAGVVG---EVKSIE----MHHEEISQAEPGDNVGFNVRGVEKNDIRRGDVIGH 314 (428)
T ss_pred ecCCceEEEEEEeeeeeccCCEEEEecCcceE---EEeeee----ecccccccCCCCCeEEEEecCCchhccCCccEecc
Confidence 89999999999999999999999999998654 899994 45789999999999998 454 47999999998
Q ss_pred cCCCC
Q 005713 375 KVSGK 379 (681)
Q Consensus 375 ~~~~~ 379 (681)
..++.
T Consensus 315 ~~n~~ 319 (428)
T COG5256 315 SDNPP 319 (428)
T ss_pred CCCCc
Confidence 87653
No 27
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=1.6e-40 Score=367.58 Aligned_cols=281 Identities=23% Similarity=0.312 Sum_probs=237.6
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCcccccc--ce-------------eeeeeccchhhcccceeEEeeeeEEeeC
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQ--TV-------------KERIMDSNDLERERGITILSKNTSITYN 150 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~--~~-------------~~~~~D~~~~E~erGiTi~~~~~~~~~~ 150 (681)
....+||+++||+|||||||+++|++..+.+.... .. -.++||..++|++||+|++.....++++
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 34578999999999999999999999888654322 00 0468999999999999999999999999
Q ss_pred CeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCc-------hhhHHHHHHHHHcCCE-EEEEEeecCCC-----
Q 005713 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPM-------PQTRFVLKKALEFGHA-VVVVVNKIDRP----- 217 (681)
Q Consensus 151 ~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~-------~qt~~~l~~~~~~gip-~ivviNKiD~~----- 217 (681)
++.++|+|||||.+|...+..+++.+|++|||||+.+|.+ .||+++|..+...|+| +|||+||||+.
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~ 163 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYS 163 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhh
Confidence 9999999999999999999999999999999999999843 7999999999999996 68899999986
Q ss_pred CCCcccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCC-CCCCcc-hhHHHHHhhCCCCccccCCceEEEEEE
Q 005713 218 SARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDN-LADDLG-PLFESIMRCIPGPRIEKDGALQMLATN 295 (681)
Q Consensus 218 ~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~-~~~gi~-~Ll~~I~~~lp~p~~~~~~p~~~~V~~ 295 (681)
.++++++++++++++.+++...+ ++|++++||++|.|+.+... ..|.-. .|++.| +.+++|..+.+.||++.|.+
T Consensus 164 ~~~~~~i~~ei~~~l~~~g~~~~--~~~~ipiSa~~G~ni~~~~~~~~Wy~g~tLl~~l-~~i~~p~~~~~~plr~~I~~ 240 (447)
T PLN00043 164 KARYDEIVKEVSSYLKKVGYNPD--KIPFVPISGFEGDNMIERSTNLDWYKGPTLLEAL-DQINEPKRPSDKPLRLPLQD 240 (447)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcc--cceEEEEeccccccccccccCCcccchHHHHHHH-hhcCCCccccCCCcEEEEEE
Confidence 34567788888888887765432 46899999999998865442 333322 466655 55777877788999999999
Q ss_pred eeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEE--ecc--cccccCCe
Q 005713 296 LEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI--DDIQIGET 371 (681)
Q Consensus 296 ~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~gl--~~~~~Gdt 371 (681)
+++.++.|+++.|||.+|+|++||.|.+.|.+... +|++|.. ++.++++|.|||.|+| .++ +++..|++
T Consensus 241 v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~~~~---~VksI~~----~~~~v~~a~aGd~v~i~l~~~~~~~i~rG~v 313 (447)
T PLN00043 241 VYKIGGIGTVPVGRVETGVIKPGMVVTFGPTGLTT---EVKSVEM----HHESLQEALPGDNVGFNVKNVAVKDLKRGYV 313 (447)
T ss_pred EEEeCCcEEEEEEEEECCEEeeCCEEEEcCCCCEE---EEEEEEE----CCeEeCEecCCCeEEEEECCCCHhhCCCccE
Confidence 99999999999999999999999999999987654 9999954 4678999999999999 455 47899999
Q ss_pred eeccC
Q 005713 372 IADKV 376 (681)
Q Consensus 372 l~~~~ 376 (681)
|++..
T Consensus 314 l~~~~ 318 (447)
T PLN00043 314 ASNSK 318 (447)
T ss_pred EccCC
Confidence 99863
No 28
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=1.4e-39 Score=361.42 Aligned_cols=285 Identities=26% Similarity=0.363 Sum_probs=237.1
Q ss_pred cCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc
Q 005713 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (681)
Q Consensus 85 ~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d 164 (681)
.....+||+++||+|||||||+++|++..+.+..........+|..++|++||+|++.....+.+++..++|||||||.+
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 34568999999999999999999999887765433333346799999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCE-EEEEEeecCCCCCC--cccchhhHHHHHHHhhccccc
Q 005713 165 FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSAR--PDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 165 f~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip-~ivviNKiD~~~~~--~~~~~~ei~~~~~~l~~~~~~ 241 (681)
|...+...+..+|++|||||+.+|+..||+++|..+...|+| +|+++||+|+.+.+ ++.+.+++..++..++...
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~-- 234 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPG-- 234 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCc--
Confidence 999999999999999999999999999999999999999998 77899999997531 3344456666666655432
Q ss_pred CCceEEEeecccCCCCCCCC------CCCC--CcchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCceEEEEEeecc
Q 005713 242 CDFQAIYASGIQGKAGLSPD------NLAD--DLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAG 313 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~------~~~~--gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG 313 (681)
.++|++++||++|++..... ...| ++..|++.|.+++|.|..+.+.||+++|+++++.++.|.++.|+|.+|
T Consensus 235 ~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG 314 (478)
T PLN03126 235 DDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERG 314 (478)
T ss_pred CcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceeeEEEEEEEeCCceEEEEEEEEcC
Confidence 36899999999997653111 1112 356789999888777777778999999999999999999999999999
Q ss_pred cccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEE--eccc--ccccCCeeeccC
Q 005713 314 VLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGID--DIQIGETIADKV 376 (681)
Q Consensus 314 ~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~~Gdtl~~~~ 376 (681)
+|++||.|.+.|.+.. ...+|++|+.+ +.++++|.|||.|+| .|++ ++..|++|++.+
T Consensus 315 ~i~~Gd~v~i~p~~~~-~~~~VksI~~~----~~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~~ 376 (478)
T PLN03126 315 TVKVGETVDIVGLRET-RSTTVTGVEMF----QKILDEALAGDNVGLLLRGIQKADIQRGMVLAKPG 376 (478)
T ss_pred eEecCCEEEEecCCCc-eEEEEEEEEEC----CeECCEEeCCceeeeeccCCcHHHcCCccEEecCC
Confidence 9999999999987532 23589999643 578999999999999 5654 689999999865
No 29
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=1.1e-39 Score=360.97 Aligned_cols=281 Identities=24% Similarity=0.315 Sum_probs=236.4
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCcccccc---------ce------eeeeeccchhhcccceeEEeeeeEEeeC
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQ---------TV------KERIMDSNDLERERGITILSKNTSITYN 150 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~---------~~------~~~~~D~~~~E~erGiTi~~~~~~~~~~ 150 (681)
.....||+++||+|+|||||+++|++..+.+...+ .. -.+++|..++|++||+|++.....++|+
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 34568999999999999999999999888765432 00 1357999999999999999999999999
Q ss_pred CeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCc-------hhhHHHHHHHHHcCCE-EEEEEeecCCCC----
Q 005713 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPM-------PQTRFVLKKALEFGHA-VVVVVNKIDRPS---- 218 (681)
Q Consensus 151 ~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~-------~qt~~~l~~~~~~gip-~ivviNKiD~~~---- 218 (681)
++.++|+|||||.+|..++..++..+|++|||||+.+|++ .||+++|..+..+|+| +|||+||||+..
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~ 163 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYS 163 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhh
Confidence 9999999999999999999999999999999999999984 7999999999999997 578999999542
Q ss_pred -CCcccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCC-CCCCc-chhHHHHHhhCCCCccccCCceEEEEEE
Q 005713 219 -ARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDN-LADDL-GPLFESIMRCIPGPRIEKDGALQMLATN 295 (681)
Q Consensus 219 -~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~-~~~gi-~~Ll~~I~~~lp~p~~~~~~p~~~~V~~ 295 (681)
++++++.+++.+.+..++...+ ++|++++||++|.|+.+... ..|.- ..|++.| +.+++|..+.+.||+++|.+
T Consensus 164 ~~~~~~i~~~i~~~l~~~g~~~~--~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l-~~~~~~~~~~~~p~r~~I~~ 240 (446)
T PTZ00141 164 QERYDEIKKEVSAYLKKVGYNPE--KVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEAL-DTLEPPKRPVDKPLRLPLQD 240 (446)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcc--cceEEEeecccCCCcccCCCCCcccchHHHHHHH-hCCCCCCcCCCCCeEEEEEE
Confidence 4577888888888877665422 58999999999998865432 23322 2467765 45666777778999999999
Q ss_pred eeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEe--cc--cccccCCe
Q 005713 296 LEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC--GI--DDIQIGET 371 (681)
Q Consensus 296 ~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~--gl--~~~~~Gdt 371 (681)
++..++.|+++.|+|.+|+|++||.|.+.|.+... +|++|.. ++.++++|.|||.|++. ++ .++.+||+
T Consensus 241 v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~~~~---~VksI~~----~~~~~~~a~aG~~v~i~L~~i~~~~v~rG~v 313 (446)
T PTZ00141 241 VYKIGGIGTVPVGRVETGILKPGMVVTFAPSGVTT---EVKSVEM----HHEQLAEAVPGDNVGFNVKNVSVKDIKRGYV 313 (446)
T ss_pred EEecCCceEEEEEEEEcceEecCCEEEEccCCcEE---EEEEEEe----cCcccCEECCCCEEEEEECCCCHHHcCCceE
Confidence 99999999999999999999999999999987654 9999954 45789999999999994 54 36899999
Q ss_pred eeccC
Q 005713 372 IADKV 376 (681)
Q Consensus 372 l~~~~ 376 (681)
|++..
T Consensus 314 l~~~~ 318 (446)
T PTZ00141 314 ASDSK 318 (446)
T ss_pred EecCC
Confidence 99864
No 30
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=1.2e-39 Score=358.72 Aligned_cols=284 Identities=26% Similarity=0.383 Sum_probs=237.1
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
....+||+++||+|||||||+++|++..+............+|.++.|++||+|++.....+.+++..++|+|||||.+|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 45679999999999999999999999877654333333457999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCE-EEEEEeecCCCCCC--cccchhhHHHHHHHhhcccccC
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSAR--PDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip-~ivviNKiD~~~~~--~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
...+.+++..+|++++|+|+.+|+..||++++..+...++| +|+|+||+|+.+.. ++.+.+++..++..++... .
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~--~ 166 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPG--D 166 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCC--C
Confidence 99999999999999999999999999999999999999999 67899999997532 2334456667766655432 2
Q ss_pred CceEEEeecccCCCCCCCCC--------CCCCcchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCceEEEEEeeccc
Q 005713 243 DFQAIYASGIQGKAGLSPDN--------LADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGV 314 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~--------~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~ 314 (681)
.+|++++||++|+|...... +..++..|+++|..++|+|..+.+.||+++|++++++++.|++++|||++|+
T Consensus 167 ~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~ 246 (409)
T CHL00071 167 DIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVATGRIERGT 246 (409)
T ss_pred cceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEEeCCCeEEEEEEEecCE
Confidence 57999999999997654331 1224678999999989888888889999999999999999999999999999
Q ss_pred ccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEe--ccc--ccccCCeeeccC
Q 005713 315 LRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC--GID--DIQIGETIADKV 376 (681)
Q Consensus 315 lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~--gl~--~~~~Gdtl~~~~ 376 (681)
+++||.|.+.+.+.. ...+|++|+.+ +.++++|.|||+|+|. +++ ++.+||+|++.+
T Consensus 247 l~~Gd~v~i~p~~~~-~~~~VksI~~~----~~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~~ 307 (409)
T CHL00071 247 VKVGDTVEIVGLRET-KTTTVTGLEMF----QKTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPG 307 (409)
T ss_pred EeeCCEEEEeeCCCC-cEEEEEEEEEc----CcCCCEECCCceeEEEEcCCCHHHcCCeEEEecCC
Confidence 999999998764321 12499999654 3578999999999874 654 799999999865
No 31
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.5e-39 Score=356.25 Aligned_cols=282 Identities=28% Similarity=0.382 Sum_probs=232.1
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
....+||+++||+|||||||+++|++.............+.+|.+++|++||+|++.....+.+++..++|||||||.+|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 34579999999999999999999997543211111112347999999999999999998888888899999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCE-EEEEEeecCCCCCC--cccchhhHHHHHHHhhcccccC
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSAR--PDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip-~ivviNKiD~~~~~--~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
...+.+.+..+|++|+|+|+.+|+..||++++..+...++| +|+|+||+|+.+.. ++.+.+++.+.+..++... .
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~--~ 166 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPG--D 166 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCc--C
Confidence 99999999999999999999999999999999999999998 67899999987422 2234446666666555432 2
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEE
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVR 322 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~ 322 (681)
.+|++++||++|.+.. ..+..++..|++.+.+++|+|..+.++||+++|++++++++.|++++|||++|+|++||.|+
T Consensus 167 ~~~ii~vSa~~g~~~~--~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~gd~v~ 244 (394)
T PRK12736 167 DIPVIRGSALKALEGD--PKWEDAIMELMDAVDEYIPTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVGDEVE 244 (394)
T ss_pred CccEEEeeccccccCC--CcchhhHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecCCEEE
Confidence 4689999999985332 12334678999999999998888888999999999999999999999999999999999999
Q ss_pred EccCCCceeeeEEEeEEEeeccceeecceecCCCEEEE--eccc--ccccCCeeeccC
Q 005713 323 VCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGID--DIQIGETIADKV 376 (681)
Q Consensus 323 ~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~~Gdtl~~~~ 376 (681)
+.+.+.. ...+|++|.. ++.++++|.|||+|++ +|++ ++.+||+||+.+
T Consensus 245 i~p~~~~-~~~~V~sI~~----~~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~ 297 (394)
T PRK12736 245 IVGIKET-QKTVVTGVEM----FRKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPG 297 (394)
T ss_pred EecCCCC-eEEEEEEEEE----CCEEccEECCCCEEEEEECCCcHHhCCcceEEecCC
Confidence 9887431 2358999964 4578999999999987 6764 799999999865
No 32
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=6e-39 Score=351.82 Aligned_cols=282 Identities=27% Similarity=0.362 Sum_probs=229.2
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
.++.+||+++||+|||||||+++|++.............+.+|.+++|++||+|++.....+.+++..++|||||||.+|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 45678999999999999999999986532211111112457999999999999999999888888899999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEE-EEEeecCCCCCC--cccchhhHHHHHHHhhcccccC
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVV-VVVNKIDRPSAR--PDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~i-vviNKiD~~~~~--~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
...+.+.+..+|++++|+|+.+|+..||++++..+...++|.+ +|+||+|+.+.+ .+.+.+++++++..++... .
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~--~ 166 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPG--D 166 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCc--c
Confidence 9999999999999999999999999999999999999999866 689999987532 2233445666665554322 2
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEE
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVR 322 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~ 322 (681)
.+|++++||++|.+.. ..+..++..|++++.+.+|+|..+.++||+++|++++++++.|++++|+|.+|+|++||.|.
T Consensus 167 ~~~ii~vSa~~g~~g~--~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~gd~v~ 244 (394)
T TIGR00485 167 DTPIIRGSALKALEGD--AEWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVGEEVE 244 (394)
T ss_pred CccEEECccccccccC--CchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCCCEEE
Confidence 4799999999986432 22333567899999888888887888999999999999999999999999999999999999
Q ss_pred EccCCCceeeeEEEeEEEeeccceeecceecCCCEEEE--ecc--cccccCCeeeccC
Q 005713 323 VCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI--DDIQIGETIADKV 376 (681)
Q Consensus 323 ~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~gl--~~~~~Gdtl~~~~ 376 (681)
+.+.+.. ...+|++|+. ++.++++|.|||+|++ .|+ +++.+||+||+.+
T Consensus 245 i~p~~~~-~~~~VksI~~----~~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~~ 297 (394)
T TIGR00485 245 IVGLKDT-RKTTVTGVEM----FRKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPG 297 (394)
T ss_pred EecCCCC-cEEEEEEEEE----CCeEEEEECCCCEEEEEeCCccHHHCCccEEEecCC
Confidence 9875311 1248999965 3578899999999987 666 4799999999864
No 33
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=9.1e-39 Score=350.24 Aligned_cols=284 Identities=25% Similarity=0.352 Sum_probs=233.6
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
.....||+++||+|||||||+++|++.............+.+|.++.|++||+|++.....+.+++..++|||||||.+|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 45678999999999999999999998543221111111357999999999999999999889888999999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEE-EEEeecCCCCCC--cccchhhHHHHHHHhhcccccC
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVV-VVVNKIDRPSAR--PDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~i-vviNKiD~~~~~--~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
...+.+.+..+|++++|+|+.+|+..|+++++..+...++|.+ +|+||+|+.+.. ++.+.+++..++..++... .
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~--~ 166 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG--D 166 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCc--C
Confidence 9999999999999999999999999999999999999999966 579999997421 2333445666665544321 2
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEE
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVR 322 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~ 322 (681)
++|++++||++|+|......+..++..|++.|.+.+|+|..+.++||+++|+++++.++.|+++.|+|.+|+|++||.|.
T Consensus 167 ~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~gd~v~ 246 (396)
T PRK12735 167 DTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVGDEVE 246 (396)
T ss_pred ceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCCCEEE
Confidence 57999999999987644333444678999999999998888888999999999999999999999999999999999999
Q ss_pred EccCCCceeeeEEEeEEEeeccceeecceecCCCEEEE--ecc--cccccCCeeeccC
Q 005713 323 VCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI--DDIQIGETIADKV 376 (681)
Q Consensus 323 ~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~gl--~~~~~Gdtl~~~~ 376 (681)
+.|.+.. ...+|++|.. ++.++++|.|||+|++ +|+ +++.+|++||+.+
T Consensus 247 i~p~~~~-~~~~VksI~~----~~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~ 299 (396)
T PRK12735 247 IVGIKET-QKTTVTGVEM----FRKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPG 299 (396)
T ss_pred EecCCCC-eEEEEEEEEE----CCeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCC
Confidence 9986421 1348999954 4578999999999999 566 4799999999865
No 34
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.1e-38 Score=349.29 Aligned_cols=284 Identities=25% Similarity=0.352 Sum_probs=233.7
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
.....||+++||+|||||||+++|++...............||.+++|++||+|++.....+.+++..++|+|||||.+|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 34678999999999999999999998543211111122347999999999999999998888888999999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEE-EEEeecCCCCCC--cccchhhHHHHHHHhhcccccC
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVV-VVVNKIDRPSAR--PDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~i-vviNKiD~~~~~--~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
...+...+..+|++++|+|+.+|+..||++++..+...++|.+ +++||+|+.+.. ++.+.+++.+++..++... .
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~--~ 166 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG--D 166 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCc--c
Confidence 9999999999999999999999999999999999999999976 689999997421 2334456666666555422 2
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEE
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVR 322 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~ 322 (681)
+.|++++||++|.+......+..++..|+++|...+|+|....++||+++|.++++.++.|.++.|+|.+|++++||.|.
T Consensus 167 ~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~gd~v~ 246 (396)
T PRK00049 167 DTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVGEEVE 246 (396)
T ss_pred CCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecCCEEE
Confidence 57899999999976433333444678999999999998887888999999999999999999999999999999999999
Q ss_pred EccCCCceeeeEEEeEEEeeccceeecceecCCCEEEE--ecc--cccccCCeeeccC
Q 005713 323 VCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI--DDIQIGETIADKV 376 (681)
Q Consensus 323 ~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~gl--~~~~~Gdtl~~~~ 376 (681)
+.+.+. ....+|++|.. ++.++++|.|||+|++ .|+ +++..|++||+.+
T Consensus 247 i~p~~~-~~~~~VksI~~----~~~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~ 299 (396)
T PRK00049 247 IVGIRD-TQKTTVTGVEM----FRKLLDEGQAGDNVGALLRGIKREDVERGQVLAKPG 299 (396)
T ss_pred EeecCC-CceEEEEEEEE----CCcEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCC
Confidence 987632 12358999964 4578999999999999 566 4799999999865
No 35
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=2.7e-38 Score=350.47 Aligned_cols=282 Identities=24% Similarity=0.328 Sum_probs=233.9
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccc------------cc---eeeeeeccchhhcccceeEEeeeeEEeeC
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN------------QT---VKERIMDSNDLERERGITILSKNTSITYN 150 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~------------~~---~~~~~~D~~~~E~erGiTi~~~~~~~~~~ 150 (681)
.+...||+++||+|||||||+++|++..+.+... +. ...+++|.+++|++||+|++.....+.++
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 3467899999999999999999999988876533 11 12568999999999999999999999999
Q ss_pred CeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCC--CCchhhHHHHHHHHHcCC-EEEEEEeecCCCCCC---cccc
Q 005713 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVE--GPMPQTRFVLKKALEFGH-AVVVVVNKIDRPSAR---PDYV 224 (681)
Q Consensus 151 ~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~--g~~~qt~~~l~~~~~~gi-p~ivviNKiD~~~~~---~~~~ 224 (681)
++.++|||||||.+|...+...++.+|++|+|+|+.+ +...++++++..+...++ |+++|+||+|+.+.+ ++..
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~ 162 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEV 162 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHH
Confidence 9999999999999999988888999999999999999 999999999999988886 589999999997532 2345
Q ss_pred hhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCC-CCCCc-chhHHHHHhhCCCCccccCCceEEEEEEeeecCCC
Q 005713 225 INSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDN-LADDL-GPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHK 302 (681)
Q Consensus 225 ~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~-~~~gi-~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~ 302 (681)
.+++.+++..++... ..++++++||++|.|+.++.. ..|.- ..|+++ ++.+|+|..+.+.||++.|.++++.++.
T Consensus 163 ~~~i~~~l~~~g~~~--~~~~ii~iSA~~g~gi~~~~~~~~wy~g~~L~~~-l~~~~~~~~~~~~p~r~~i~~~~~~~g~ 239 (425)
T PRK12317 163 KEEVSKLLKMVGYKP--DDIPFIPVSAFEGDNVVKKSENMPWYNGPTLLEA-LDNLKPPEKPTDKPLRIPIQDVYSISGV 239 (425)
T ss_pred HHHHHHHHHhhCCCc--CcceEEEeecccCCCccccccCCCcccHHHHHHH-HhcCCCCccccCCCcEEEEEEEEeeCCC
Confidence 556666665544321 136899999999998876542 33332 346666 4667888777789999999999999999
Q ss_pred ceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEE--eccc--ccccCCeeeccCC
Q 005713 303 GRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGID--DIQIGETIADKVS 377 (681)
Q Consensus 303 G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~~Gdtl~~~~~ 377 (681)
|+++.|+|.+|+|++||.|.+.|.+... +|++|.. ++.++++|.|||.|++ .+++ ++.+||+|++.+.
T Consensus 240 G~vv~G~v~~G~v~~Gd~v~i~P~~~~~---~VksI~~----~~~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~~~~~ 311 (425)
T PRK12317 240 GTVPVGRVETGVLKVGDKVVFMPAGVVG---EVKSIEM----HHEELPQAEPGDNIGFNVRGVGKKDIKRGDVCGHPDN 311 (425)
T ss_pred eEEEEEEEeeccEecCCEEEECCCCCeE---EEEEEEE----CCcccCEECCCCeEEEEECCCCHHHccCccEecCCCC
Confidence 9999999999999999999999988654 9999964 4578999999999988 4553 6899999998654
No 36
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=1.1e-37 Score=344.63 Aligned_cols=286 Identities=25% Similarity=0.335 Sum_probs=227.3
Q ss_pred cCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc
Q 005713 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (681)
Q Consensus 85 ~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d 164 (681)
......||+++||+|||||||+++|++...............+|..++|++||+|++.....+++++.+++|+|||||.+
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 34567999999999999999999997542111111111123699999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCE-EEEEEeecCCCCCC--cccchhhHHHHHHHhhccccc
Q 005713 165 FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSAR--PDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 165 f~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip-~ivviNKiD~~~~~--~~~~~~ei~~~~~~l~~~~~~ 241 (681)
|...+...+..+|+++||||+.+|++.||++++..+...++| +|+++||+|+.+.. .+.+.+++.+++..++...
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~-- 214 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPG-- 214 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCC--
Confidence 999999999999999999999999999999999999999999 57899999987421 1222234445554433321
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEE
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEV 321 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v 321 (681)
..+|++++||+++....+......++..|++.+.+++|.|..+.++||++.|.++++.++.|+++.|+|.+|+|++||.|
T Consensus 215 ~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i~~Gd~v 294 (447)
T PLN03127 215 DEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEV 294 (447)
T ss_pred CcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcccccceEeeEEEEEEcCCceEEEEEEEEccEEecCCEE
Confidence 35799999987554322222122347889999999999888888899999999999999999999999999999999999
Q ss_pred EEccCCCc-eeeeEEEeEEEeeccceeecceecCCCEEEE--eccc--ccccCCeeeccC
Q 005713 322 RVCTSEDS-CRYARISELFVYEKFSRVSAEIVAAGDICAV--CGID--DIQIGETIADKV 376 (681)
Q Consensus 322 ~~~~~~~~-~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~~Gdtl~~~~ 376 (681)
.+.+.+.. ....+|++|..+ +.++++|.|||.|++ .|++ ++..|++||+..
T Consensus 295 ~i~p~~~~g~~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~~ 350 (447)
T PLN03127 295 EIVGLRPGGPLKTTVTGVEMF----KKILDQGQAGDNVGLLLRGLKREDVQRGQVICKPG 350 (447)
T ss_pred EEcccCCCCcEEEEEEEEEEE----CcEeCEEcCCCEEEEEeCCCCHHHCCCccEEecCC
Confidence 99875321 224599999654 467899999999998 5664 799999999863
No 37
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=1.3e-37 Score=342.08 Aligned_cols=280 Identities=24% Similarity=0.276 Sum_probs=221.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccc------------cce-----eeeeeccchhhcccceeEEeeeeEEeeCCe
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDN------------QTV-----KERIMDSNDLERERGITILSKNTSITYNDT 152 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~------------~~~-----~~~~~D~~~~E~erGiTi~~~~~~~~~~~~ 152 (681)
.+|+++||+|||||||+++|++..+.+... +.. -+++||.+++|++||+|++.....+.|++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 379999999999999999999998876541 111 157999999999999999999999999999
Q ss_pred EEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCE-EEEEEeecCCCCCCcccchhhHHHH
Q 005713 153 KINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSARPDYVINSTFEL 231 (681)
Q Consensus 153 ~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip-~ivviNKiD~~~~~~~~~~~ei~~~ 231 (681)
+++|||||||.+|...+..++..+|++|||||+.+|++.||++++..+...+++ +|+|+||+|+..++ ++.++++.+.
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~-~~~~~~i~~~ 159 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYD-EEVFENIKKD 159 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccch-HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998875 78899999997544 2333333333
Q ss_pred HHHhhcccccCCceEEEeecccCCCCCCCC-CCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCceEEEEEe
Q 005713 232 FIELNATDEQCDFQAIYASGIQGKAGLSPD-NLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRL 310 (681)
Q Consensus 232 ~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~-~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV 310 (681)
+..+.......++|++++||++|.|+.+.. ...|.-.+.|..+++.+++|....+.||++.|..++...+.+.-..|+|
T Consensus 160 ~~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~L~~~~~~~~~~~~p~r~~i~~v~~~~~~~~g~~G~v 239 (406)
T TIGR02034 160 YLAFAEQLGFRDVTFIPLSALKGDNVVSRSESMPWYSGPTLLEILETVEVERDAQDLPLRFPVQYVNRPNLDFRGYAGTI 239 (406)
T ss_pred HHHHHHHcCCCCccEEEeecccCCCCcccccCCCccchhHHHHHHHhcCCCCCcCCCCcccceEEEeecCCCcEEEEEEE
Confidence 322211111125689999999999877653 2333323333344456777777778999999998876444333367999
Q ss_pred ecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEec--ccccccCCeeeccCC
Q 005713 311 HAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCG--IDDIQIGETIADKVS 377 (681)
Q Consensus 311 ~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~g--l~~~~~Gdtl~~~~~ 377 (681)
.+|+|++||.|.+.|.+... +|++|..+ +.++++|.|||+|++.. .+++.+||+||+++.
T Consensus 240 ~~G~l~~gd~v~i~P~~~~~---~VksI~~~----~~~~~~a~~G~~v~l~l~~~~~i~rG~vl~~~~~ 301 (406)
T TIGR02034 240 ASGSVHVGDEVVVLPSGRSS---RVARIVTF----DGDLEQARAGQAVTLTLDDEIDISRGDLLAAADS 301 (406)
T ss_pred ecceeecCCEEEEeCCCcEE---EEEEEEEC----CcccCEeCCCCEEEEEECCccccCCccEEEcCCC
Confidence 99999999999999987654 99999644 45789999999999953 456899999998754
No 38
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.2e-38 Score=311.58 Aligned_cols=286 Identities=26% Similarity=0.384 Sum_probs=239.0
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
.....||+.|||+|||||||..++................-.|..++|++|||||......++..+..+-.+|||||+||
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 34578999999999999999999986543222222223345688899999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCE-EEEEEeecCCCCC-C-cccchhhHHHHHHHhhcccccC
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSA-R-PDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip-~ivviNKiD~~~~-~-~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
...+.....++|++||||+|.+|+++||++|+..+++.|+| +++|+||+|+.+. + .+.+..++++++.+++...+
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd-- 166 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGD-- 166 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCC--
Confidence 99999999999999999999999999999999999999997 6778999999863 2 35566788899988877533
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEE
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVR 322 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~ 322 (681)
+.|++..||+..-. ....+...+.+|++++-+++|+|..+.+.||.|.|.+++...+.|++++|||.+|+|++|+.+.
T Consensus 167 ~~Pii~gSal~ale--~~~~~~~~i~eLm~avd~yip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg~eve 244 (394)
T COG0050 167 DTPIIRGSALKALE--GDAKWEAKIEELMDAVDSYIPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVGEEVE 244 (394)
T ss_pred Ccceeechhhhhhc--CCcchHHHHHHHHHHHHhcCCCCCCcccccccccceeeEEEcCceeEEEEEEeeeeeccCCEEE
Confidence 67999999986542 2223444678999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCceeeeEEEeEEEeeccceeecceecCCCEEEE--ecc--cccccCCeeeccCCCCC
Q 005713 323 VCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI--DDIQIGETIADKVSGKP 380 (681)
Q Consensus 323 ~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~gl--~~~~~Gdtl~~~~~~~~ 380 (681)
+..-.. ..+..++.+ .+.++..+++.|||.|++ .|. +++..|.+|+.++...|
T Consensus 245 ivG~~~-~~kttvtgv----emfrk~ld~~~AGdnvg~llRg~~r~~veRGqvLakpgsi~p 301 (394)
T COG0050 245 IVGIKE-TQKTTVTGV----EMFRKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPGSIKP 301 (394)
T ss_pred Eecccc-cceeEEEhH----HHHHHHHhccccCCCcceEEEeccccceecceEeecCCcccc
Confidence 987662 224467766 566778899999999998 554 48999999998775443
No 39
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=4.4e-37 Score=340.69 Aligned_cols=282 Identities=24% Similarity=0.308 Sum_probs=230.3
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccc---------------eeeeeeccchhhcccceeEEeeeeEEeeC
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQT---------------VKERIMDSNDLERERGITILSKNTSITYN 150 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~---------------~~~~~~D~~~~E~erGiTi~~~~~~~~~~ 150 (681)
....+||+++||+|||||||+++|++..+.+..... .-.+++|..++|++||+|++.....+.++
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 456799999999999999999999998776542110 01468999999999999999999999999
Q ss_pred CeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCC---CchhhHHHHHHHHHcCC-EEEEEEeecCCCCCC---ccc
Q 005713 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG---PMPQTRFVLKKALEFGH-AVVVVVNKIDRPSAR---PDY 223 (681)
Q Consensus 151 ~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g---~~~qt~~~l~~~~~~gi-p~ivviNKiD~~~~~---~~~ 223 (681)
+..++|||||||.+|...+..+++.+|++|||||++++ ...++.+++..+...++ ++|||+||+|+.+.+ ++.
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~ 163 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEA 163 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHH
Confidence 99999999999999999999999999999999999998 77889988888877775 688899999997533 234
Q ss_pred chhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCC-CCCC-cchhHHHHHhhCCCCccccCCceEEEEEEeeecCC
Q 005713 224 VINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDN-LADD-LGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEH 301 (681)
Q Consensus 224 ~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~-~~~g-i~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~ 301 (681)
+.+++.+++...+... ..++++++||++|.|+.+... ..|. -..|+++| +.+++|..+.++||++.|+++++.++
T Consensus 164 ~~~ei~~~~~~~g~~~--~~~~~i~iSA~~g~ni~~~~~~~~w~~g~~l~~~l-~~~~~~~~~~~~p~r~~i~~v~~~~g 240 (426)
T TIGR00483 164 IKKEVSNLIKKVGYNP--DTVPFIPISAWNGDNVIKKSENTPWYKGKTLLEAL-DALEPPEKPTDKPLRIPIQDVYSITG 240 (426)
T ss_pred HHHHHHHHHHHcCCCc--ccceEEEeeccccccccccccCCccccchHHHHHH-hcCCCCCCccCCCcEEEEEEEEecCC
Confidence 4556666665544321 246899999999998776442 2221 13578887 45777777778999999999999999
Q ss_pred CceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEE--ecc--cccccCCeeeccCC
Q 005713 302 KGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI--DDIQIGETIADKVS 377 (681)
Q Consensus 302 ~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~gl--~~~~~Gdtl~~~~~ 377 (681)
.|+++.|+|.+|+|++||.|.+.|.+... +|++|.. ++.++++|.|||+|++ .++ +++..||+|++...
T Consensus 241 ~G~vv~G~v~~G~i~~gd~v~i~P~~~~~---~VksI~~----~~~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl~~~~~ 313 (426)
T TIGR00483 241 VGTVPVGRVETGVLKPGDKVVFEPAGVSG---EVKSIEM----HHEQIEQAEPGDNIGFNVRGVSKKDIRRGDVCGHPDN 313 (426)
T ss_pred CeEEEEEEEccceeecCCEEEECCCCcEE---EEEEEEE----CCcccCEEcCCCEEEEEECCCChhhcccceEEecCCC
Confidence 99999999999999999999999987654 9999964 4568999999999998 455 46899999998643
No 40
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.5e-38 Score=319.18 Aligned_cols=287 Identities=29% Similarity=0.386 Sum_probs=243.1
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
....||+-|||+|||||||.-++.+-.............-+|..++|+.|||||......++.....+--+|||||+||.
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 45789999999999999999999864332222222234456889999999999999999888889999999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCE-EEEEEeecCCC-CCC-cccchhhHHHHHHHhhcccccCC
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRP-SAR-PDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip-~ivviNKiD~~-~~~-~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
..+.......|++||||.|++|.++||++|+.++++.|++ ++|++||.|.. +++ .+-+.-++++++.+++.+.+ +
T Consensus 132 KNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd--~ 209 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGD--N 209 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCC--C
Confidence 9999999999999999999999999999999999999986 77889999997 333 34455678889888887654 6
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEE
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRV 323 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~ 323 (681)
.|++.+||+..-...+++-....+..|++++-.|+|.|..+.+.||.+.|.+++..++.|+++.||+.+|+||+||++-+
T Consensus 210 ~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG~e~ei 289 (449)
T KOG0460|consen 210 TPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKGDEVEI 289 (449)
T ss_pred CCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCCceeehhheeeecCCceEEEEEEeecccccCCEEEE
Confidence 89999999976544444444446788999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeeeEEEeEEEeeccceeecceecCCCEEEE--eccc--ccccCCeeeccCCCCC
Q 005713 324 CTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGID--DIQIGETIADKVSGKP 380 (681)
Q Consensus 324 ~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~~Gdtl~~~~~~~~ 380 (681)
...++.. +..|+.| .+.++.+++|.|||.+++ .|++ +++.|.+++.++...+
T Consensus 290 vG~~~~l-kttvtgi----emF~K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pGsvk~ 345 (449)
T KOG0460|consen 290 VGHNKTL-KTTVTGI----EMFRKSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPGSVKP 345 (449)
T ss_pred eccCcce-eeEeehH----HHHHHHHHhcccccceehhhhcCCHHHHhcccEEecCCcccc
Confidence 8887653 4578888 566788999999999998 6664 8999999998876444
No 41
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=1.7e-36 Score=338.03 Aligned_cols=283 Identities=22% Similarity=0.277 Sum_probs=224.1
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccc------------cce-----eeeeeccchhhcccceeEEeeeeEEe
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN------------QTV-----KERIMDSNDLERERGITILSKNTSIT 148 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~------------~~~-----~~~~~D~~~~E~erGiTi~~~~~~~~ 148 (681)
.....||+|+||+|+|||||+++|++..+.+... +.. -.++||..++|++||+|++.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 3457899999999999999999999998876541 211 14689999999999999999999999
Q ss_pred eCCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCC-EEEEEEeecCCCCCCcccchhh
Q 005713 149 YNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGH-AVVVVVNKIDRPSARPDYVINS 227 (681)
Q Consensus 149 ~~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gi-p~ivviNKiD~~~~~~~~~~~e 227 (681)
+++..++|||||||.+|...+...+..+|++|||||+.+|+..||++++..+...++ ++|||+||+|+.+.+ ++.+++
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~-~~~~~~ 182 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYS-EEVFER 182 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccch-hHHHHH
Confidence 999999999999999999999999999999999999999999999999999998886 578899999997544 223333
Q ss_pred HHHHHHHhhcccc-cCCceEEEeecccCCCCCCCCC-CCCCc-chhHHHHHhhCCCCccccCCceEEEEEEeeecCCCce
Q 005713 228 TFELFIELNATDE-QCDFQAIYASGIQGKAGLSPDN-LADDL-GPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGR 304 (681)
Q Consensus 228 i~~~~~~l~~~~~-~~~~pvi~~SA~~G~~~~~~~~-~~~gi-~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~ 304 (681)
+.+.+..+..... ....+++++||++|.|+..... ..|.- ..|++ +++.+|+|..+.+.||++.|..++...+..+
T Consensus 183 i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~~~~~wy~G~tLl~-~L~~i~~~~~~~~~p~r~~I~~v~~~~~~~~ 261 (474)
T PRK05124 183 IREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQSESMPWYSGPTLLE-VLETVDIQRVVDAQPFRFPVQYVNRPNLDFR 261 (474)
T ss_pred HHHHHHHHHHhcCCCCCceEEEEEeecCCCcccccccccccchhhHHH-HHhhcCCCCCCCCCCceeeEEEEEecCCccc
Confidence 4333322111100 1246899999999998876542 23322 23554 6677888777778999999998876544323
Q ss_pred EEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEec--ccccccCCeeeccCC
Q 005713 305 IAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCG--IDDIQIGETIADKVS 377 (681)
Q Consensus 305 v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~g--l~~~~~Gdtl~~~~~ 377 (681)
-..|+|.+|+|++||+|.+.|.+... +|++|..+ ..++++|.|||.|+|.. ..++..||+||+.+.
T Consensus 262 g~~G~V~sG~l~~Gd~v~i~P~~~~~---~VksI~~~----~~~v~~A~aG~~V~l~L~~~~~i~rG~VL~~~~~ 329 (474)
T PRK05124 262 GYAGTLASGVVKVGDRVKVLPSGKES---NVARIVTF----DGDLEEAFAGEAITLVLEDEIDISRGDLLVAADE 329 (474)
T ss_pred ceEEEEEeEEEecCCEEEEecCCceE---EEEEEEEc----CccccCcCCCCEEEEEeCCccccCCccEEECCCC
Confidence 35799999999999999999988654 99999654 45789999999999953 457889999998654
No 42
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=1.8e-34 Score=334.27 Aligned_cols=303 Identities=24% Similarity=0.342 Sum_probs=236.6
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
.+.++|+|+||+|||||||+++|....... ...+|+|+......+.|++..++|||||||.+|.
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~----------------~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~ 351 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAA----------------GEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT 351 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccc----------------cccCceeeeccEEEEEECCEEEEEEECCCCccch
Confidence 356899999999999999999997543211 1135899988888999999999999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceE
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQA 246 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pv 246 (681)
.++.++++.+|++|||||+.+|++.||.++|..+...++|+|||+||+|+.+++++.+..++.+. .+.......++|+
T Consensus 352 ~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~--~~~~e~~g~~vp~ 429 (787)
T PRK05306 352 AMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEY--GLVPEEWGGDTIF 429 (787)
T ss_pred hHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHh--cccHHHhCCCceE
Confidence 99999999999999999999999999999999999999999999999999877665555544331 1111111234799
Q ss_pred EEeecccCCCCCCCCCCCCCcchhHHHHHhhC--CCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEc
Q 005713 247 IYASGIQGKAGLSPDNLADDLGPLFESIMRCI--PGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVC 324 (681)
Q Consensus 247 i~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l--p~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~ 324 (681)
+++||++|. |+..||++|.... ..+..+++.|+.+.|++++.+++.|.+++++|++|+|++||.|.+.
T Consensus 430 vpvSAktG~----------GI~eLle~I~~~~e~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd~vv~g 499 (787)
T PRK05306 430 VPVSAKTGE----------GIDELLEAILLQAEVLELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGDIVVAG 499 (787)
T ss_pred EEEeCCCCC----------CchHHHHhhhhhhhhhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecCCEEEEC
Confidence 999999999 8899999886432 2234556789999999999999999999999999999999999985
Q ss_pred cCCCceeeeEEEeEEEeeccceeecceecCCCEEEEeccccc-ccCCeeeccCCC------------------------C
Q 005713 325 TSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDI-QIGETIADKVSG------------------------K 379 (681)
Q Consensus 325 ~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~-~~Gdtl~~~~~~------------------------~ 379 (681)
+. ..+|..|+ +.+..++++|.|||+|.|.|++++ .+||+|+...+. .
T Consensus 500 ~~-----~gkVr~m~---~~~~~~v~~A~pGd~V~I~gl~~~p~~Gd~l~~~~~e~~a~~~~~~r~~~~~~~~~~~~~~~ 571 (787)
T PRK05306 500 TT-----YGRVRAMV---DDNGKRVKEAGPSTPVEILGLSGVPQAGDEFVVVEDEKKAREIAEYRQEKAREKKLARQQRV 571 (787)
T ss_pred Cc-----EEEEEEEE---CCCCCCCCEEcCCCeEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 31 24666654 556678999999999999999998 899999843221 1
Q ss_pred CCCCC--ccCCC---eeeEEEeecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEEC
Q 005713 380 PLPSI--KVEEP---TVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADG 434 (681)
Q Consensus 380 ~l~~~--~~~~P---~~~~~~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~ 434 (681)
.|..+ .+..+ .+.+.+.+.. .| +.+.|.+.|.++..+++.++|-..
T Consensus 572 ~l~~~~~~~~~~~~~~~~~iikad~---~G------s~eai~~~l~~l~~~~v~~~i~~~ 622 (787)
T PRK05306 572 SLENLFEQMKEGEVKELNLIIKADV---QG------SVEALKDSLEKLSTDEVKVNIIHS 622 (787)
T ss_pred CHHHhhhhhhcCCceEEEEEEEeCC---cc------hHHHHHHHHHhhcccCCceEEEee
Confidence 11111 11122 4666666543 23 257899999999888998887654
No 43
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=4.7e-35 Score=322.96 Aligned_cols=260 Identities=22% Similarity=0.257 Sum_probs=212.8
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEee---------------C-
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY---------------N- 150 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~---------------~- 150 (681)
....||+++||+|||||||+.+|.+. ..|.+++|++||+|++.....+.+ .
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~-------------~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~ 98 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGV-------------KTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGS 98 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCC-------------CcccchhhHHhCCchhccccccccccCcccCCcccccccCC
Confidence 45688999999999999999999853 236678999999999887765421 1
Q ss_pred -----------------CeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCC-CchhhHHHHHHHHHcCCE-EEEEE
Q 005713 151 -----------------DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEFGHA-VVVVV 211 (681)
Q Consensus 151 -----------------~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g-~~~qt~~~l~~~~~~gip-~ivvi 211 (681)
...++|+|||||++|...+...+..+|++|||||+.++ +++||++++..+...+++ +|+|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvl 178 (460)
T PTZ00327 99 SKPDNPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQ 178 (460)
T ss_pred CcccccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEE
Confidence 24789999999999999999999999999999999996 799999999999989985 78899
Q ss_pred eecCCCCC-CcccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceE
Q 005713 212 NKIDRPSA-RPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQ 290 (681)
Q Consensus 212 NKiD~~~~-~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~ 290 (681)
||+|+.+. +.++..+++++++.... ...+|++++||++|. |+..|++.|.+.+|+|..+.+.||+
T Consensus 179 NKiDlv~~~~~~~~~~ei~~~l~~~~----~~~~~iipVSA~~G~----------nI~~Ll~~L~~~lp~~~r~~~~p~r 244 (460)
T PTZ00327 179 NKIDLVKEAQAQDQYEEIRNFVKGTI----ADNAPIIPISAQLKY----------NIDVVLEYICTQIPIPKRDLTSPPR 244 (460)
T ss_pred ecccccCHHHHHHHHHHHHHHHHhhc----cCCCeEEEeeCCCCC----------CHHHHHHHHHhhCCCCCCCCCCCcE
Confidence 99998742 33445556666554322 236799999999998 8999999999999999878889999
Q ss_pred EEEEEeeec--------CCCceEEEEEeecccccCCCEEEEccCC------Cce----eeeEEEeEEEeeccceeeccee
Q 005713 291 MLATNLEYD--------EHKGRIAIGRLHAGVLRKGMEVRVCTSE------DSC----RYARISELFVYEKFSRVSAEIV 352 (681)
Q Consensus 291 ~~V~~~~~d--------~~~G~v~~grV~sG~lk~gd~v~~~~~~------~~~----~~~kV~~i~~~~g~~~~~v~~a 352 (681)
++|..++.. ++.|+++.|+|.+|++++||.|.+.|.+ +++ ...+|++|+. ++.++++|
T Consensus 245 ~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g~~~~~~~~~~VksI~~----~~~~v~~a 320 (460)
T PTZ00327 245 MIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGGEFTCRPIRTRIVSLFA----ENNELQYA 320 (460)
T ss_pred EEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccCccccccceEEEEEEEE----CCeECCEE
Confidence 999977644 3479999999999999999999999864 111 1358999954 56789999
Q ss_pred cCCCEEEEe-----cc--cccccCCeeeccCC
Q 005713 353 AAGDICAVC-----GI--DDIQIGETIADKVS 377 (681)
Q Consensus 353 ~aGdiv~i~-----gl--~~~~~Gdtl~~~~~ 377 (681)
.|||.|+|. ++ +++..|++|++++.
T Consensus 321 ~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~ 352 (460)
T PTZ00327 321 VPGGLIGVGTTIDPTLTRADRLVGQVLGYPGK 352 (460)
T ss_pred cCCCEEEEEeccCCCcchhhcccccEEEcCCC
Confidence 999999994 33 36788999998653
No 44
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.7e-34 Score=311.96 Aligned_cols=280 Identities=24% Similarity=0.312 Sum_probs=233.9
Q ss_pred cCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccc---------------eeeeeeccchhhcccceeEEeeeeEEee
Q 005713 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQT---------------VKERIMDSNDLERERGITILSKNTSITY 149 (681)
Q Consensus 85 ~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~---------------~~~~~~D~~~~E~erGiTi~~~~~~~~~ 149 (681)
......+++++||+|+|||||+.+||+..+.+..... .-.|++|...+||+||+|.+.+...|+.
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 3446789999999999999999999998876553221 2278999999999999999999999999
Q ss_pred CCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCc-------hhhHHHHHHHHHcCC-EEEEEEeecCCCCC--
Q 005713 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPM-------PQTRFVLKKALEFGH-AVVVVVNKIDRPSA-- 219 (681)
Q Consensus 150 ~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~-------~qt~~~l~~~~~~gi-p~ivviNKiD~~~~-- 219 (681)
+.+.++|+|+|||.||...+......||.++||||++.|.+ .||++|...++.+|+ .+||++||||..++
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCccH
Confidence 99999999999999999999999999999999999987543 699999999999997 58999999999876
Q ss_pred -CcccchhhHHHHH-HHhhcccccCCceEEEeecccCCCCCCCC----CCCCCcc-hhHHHHHhhCCCCccccCCceEEE
Q 005713 220 -RPDYVINSTFELF-IELNATDEQCDFQAIYASGIQGKAGLSPD----NLADDLG-PLFESIMRCIPGPRIEKDGALQML 292 (681)
Q Consensus 220 -~~~~~~~ei~~~~-~~l~~~~~~~~~pvi~~SA~~G~~~~~~~----~~~~gi~-~Ll~~I~~~lp~p~~~~~~p~~~~ 292 (681)
+|+++.+.+..++ +..+..+. ++.|+++|+++|.|..... -..|.-. .||+.|-. +.+|..+.+.||++.
T Consensus 333 ~RF~eIk~~l~~fL~~~~gf~es--~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~~~~~kPl~lt 409 (603)
T KOG0458|consen 333 DRFEEIKNKLSSFLKESCGFKES--SVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPERPIDKPLRLT 409 (603)
T ss_pred HHHHHHHHHHHHHHHHhcCcccC--CcceEecccccCCcccccccchhhhhhhcCChHHHHHhh-ccCCCCcccCCeEEE
Confidence 4677777777777 44444432 5679999999999875542 1233333 45666554 778877788999999
Q ss_pred EEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEe--cc--ccccc
Q 005713 293 ATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC--GI--DDIQI 368 (681)
Q Consensus 293 V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~--gl--~~~~~ 368 (681)
|.+++..+..|..++|||.+|.|.+||+|+++++.... .|+.|. .+..+...|.|||-|.+. |+ ..+.+
T Consensus 410 Isdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~e~~---~vk~l~----~~~~~~~~a~AGD~Vsl~L~~i~~n~v~~ 482 (603)
T KOG0458|consen 410 ISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSREDA---TVKGLT----SNDEPKTWAVAGDNVSLKLPGILPNLVQV 482 (603)
T ss_pred hhheeecCCCeeEEEEEEeccccccCCEEEEecCcceE---EEEeee----cCCCcceeEeeCCEEEEecCccChhhccc
Confidence 99999999999999999999999999999999998776 888883 446788899999999984 54 36889
Q ss_pred CCeeec
Q 005713 369 GETIAD 374 (681)
Q Consensus 369 Gdtl~~ 374 (681)
||+++.
T Consensus 483 g~i~~~ 488 (603)
T KOG0458|consen 483 GDIADS 488 (603)
T ss_pred ceeeec
Confidence 999985
No 45
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=4.5e-34 Score=330.72 Aligned_cols=278 Identities=23% Similarity=0.256 Sum_probs=221.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccc------------cc----ee-eeeeccchhhcccceeEEeeeeEEeeC
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN------------QT----VK-ERIMDSNDLERERGITILSKNTSITYN 150 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~------------~~----~~-~~~~D~~~~E~erGiTi~~~~~~~~~~ 150 (681)
...||+|+||+|+|||||+++|++..+.+... ++ .. .+++|..++|++||+|++.....+.++
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 45689999999999999999999988876521 11 11 478999999999999999999999999
Q ss_pred CeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCC-EEEEEEeecCCCCCC---cccchh
Q 005713 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGH-AVVVVVNKIDRPSAR---PDYVIN 226 (681)
Q Consensus 151 ~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gi-p~ivviNKiD~~~~~---~~~~~~ 226 (681)
+.+++|||||||.+|...+...+..+|++|||||+.+|+..||++++..+...++ ++|||+||+|+.+.+ ++++.+
T Consensus 103 ~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~ 182 (632)
T PRK05506 103 KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVA 182 (632)
T ss_pred CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998885 678899999997532 223334
Q ss_pred hHHHHHHHhhcccccCCceEEEeecccCCCCCCCCC-CCCCcc-hhHHHHHhhCCCCccccCCceEEEEEEeeecCCCce
Q 005713 227 STFELFIELNATDEQCDFQAIYASGIQGKAGLSPDN-LADDLG-PLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGR 304 (681)
Q Consensus 227 ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~-~~~gi~-~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~ 304 (681)
++.+++..++. .+.+++++||++|.|+.+... ..|.-. .|++ +++.+++|....++||++.|..++...+.++
T Consensus 183 ~i~~~~~~~~~----~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~-~l~~~~~~~~~~~~p~r~~i~~v~~~~~~~~ 257 (632)
T PRK05506 183 DYRAFAAKLGL----HDVTFIPISALKGDNVVTRSARMPWYEGPSLLE-HLETVEIASDRNLKDFRFPVQYVNRPNLDFR 257 (632)
T ss_pred HHHHHHHHcCC----CCccEEEEecccCCCccccccCCCcccHhHHHH-HHhcCCCCCCcCCCCceeeEEEEEecCCCce
Confidence 44444444333 246799999999998775442 233222 3554 4556676666678999999998876543333
Q ss_pred EEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEec--ccccccCCeeeccCC
Q 005713 305 IAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCG--IDDIQIGETIADKVS 377 (681)
Q Consensus 305 v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~g--l~~~~~Gdtl~~~~~ 377 (681)
-..|+|.+|+|++||.|.+.|.+... +|++|+.+ +.++++|.|||.|+|.. -.++.+|++||+.+.
T Consensus 258 g~~G~v~~G~l~~gd~v~i~P~~~~~---~VksI~~~----~~~~~~a~aG~~v~i~l~~~~~i~rG~vL~~~~~ 325 (632)
T PRK05506 258 GFAGTVASGVVRPGDEVVVLPSGKTS---RVKRIVTP----DGDLDEAFAGQAVTLTLADEIDISRGDMLARADN 325 (632)
T ss_pred EEEEEEecceeecCCEEEEcCCCceE---EEEEEEEC----CceeCEEcCCCeEEEEecCccccCCccEEecCCC
Confidence 46799999999999999999987654 99999643 45689999999999953 346889999998764
No 46
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=5.1e-34 Score=326.16 Aligned_cols=251 Identities=23% Similarity=0.289 Sum_probs=211.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEee-CCeEEEEEeCCCccchhHHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY-NDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~i~iiDTPGh~df~~e~ 169 (681)
.|+++||+|||||||+++|.+. .+|..++|++||+|+......+.. ++..++|||||||++|...+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~-------------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m 68 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGV-------------NADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNM 68 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-------------CCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHH
Confidence 4899999999999999999642 146778899999999988777765 45789999999999999999
Q ss_pred HHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCE-EEEEEeecCCCCC-CcccchhhHHHHHHHhhcccccCCceEE
Q 005713 170 ERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSA-RPDYVINSTFELFIELNATDEQCDFQAI 247 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip-~ivviNKiD~~~~-~~~~~~~ei~~~~~~l~~~~~~~~~pvi 247 (681)
..++..+|++++|||+.+|+++||++++..+...++| +|||+||+|+.+. ..+.+.+++.+.+...+.. ..|+|
T Consensus 69 ~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~----~~~ii 144 (614)
T PRK10512 69 LAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFA----EAKLF 144 (614)
T ss_pred HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCC----CCcEE
Confidence 9999999999999999999999999999999999988 4799999998742 3344555565555443321 36899
Q ss_pred EeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCC
Q 005713 248 YASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSE 327 (681)
Q Consensus 248 ~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~ 327 (681)
++||++|. |+..|++.|.+.. +|..+.++||+++|..++..++.|+++.|+|.+|+|++||.|.+.|.+
T Consensus 145 ~VSA~tG~----------gI~~L~~~L~~~~-~~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p~~ 213 (614)
T PRK10512 145 VTAATEGR----------GIDALREHLLQLP-EREHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTGVN 213 (614)
T ss_pred EEeCCCCC----------CCHHHHHHHHHhh-ccccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcCCC
Confidence 99999999 8999999998654 444456899999999999999999999999999999999999999887
Q ss_pred CceeeeEEEeEEEeeccceeecceecCCCEEEE--ec-cc--ccccCCeeeccC
Q 005713 328 DSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CG-ID--DIQIGETIADKV 376 (681)
Q Consensus 328 ~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~g-l~--~~~~Gdtl~~~~ 376 (681)
... +|++|+. +..++++|.|||+|++ +| ++ ++..||+|++.+
T Consensus 214 ~~~---~VrsIq~----~~~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~ 260 (614)
T PRK10512 214 KPM---RVRGLHA----QNQPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADA 260 (614)
T ss_pred CcE---EEEEEec----CCcCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCC
Confidence 654 9999954 4578999999999998 45 53 789999999753
No 47
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=2.3e-33 Score=308.34 Aligned_cols=261 Identities=26% Similarity=0.294 Sum_probs=209.5
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC---------------
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--------------- 150 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--------------- 150 (681)
.+...||+++||+|||||||+++|.. .++|.++.|++||+|+......+.+.
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~-------------~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTG-------------VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEP 72 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhC-------------eecccCHhHHhcCcEEEecccccccccccccCccccccccc
Confidence 34568999999999999999999933 24789999999999999876544432
Q ss_pred -----------CeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCC-chhhHHHHHHHHHcCC-EEEEEEeecCCC
Q 005713 151 -----------DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEFGH-AVVVVVNKIDRP 217 (681)
Q Consensus 151 -----------~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~~gi-p~ivviNKiD~~ 217 (681)
...++|||||||.+|...+...+..+|++++|+|+.++. ..++.+++..+...++ |+++|+||+|+.
T Consensus 73 ~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~ 152 (411)
T PRK04000 73 KCPNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLV 152 (411)
T ss_pred cccccccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccc
Confidence 268999999999999999999999999999999999987 8999999999888886 589999999987
Q ss_pred CCCc-ccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEe
Q 005713 218 SARP-DYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNL 296 (681)
Q Consensus 218 ~~~~-~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~ 296 (681)
+.+. ....+++..++... ....+|++++||++|. |+..|++.|.+.+|+|..+.+.||++.|.++
T Consensus 153 ~~~~~~~~~~~i~~~l~~~----~~~~~~ii~vSA~~g~----------gI~~L~~~L~~~l~~~~~~~~~~~r~~I~~~ 218 (411)
T PRK04000 153 SKERALENYEQIKEFVKGT----VAENAPIIPVSALHKV----------NIDALIEAIEEEIPTPERDLDKPPRMYVARS 218 (411)
T ss_pred cchhHHHHHHHHHHHhccc----cCCCCeEEEEECCCCc----------CHHHHHHHHHHhCCCCCCCCCCCceEEEEee
Confidence 5321 11223333332211 1224789999999999 8999999999999988877889999999998
Q ss_pred eec--------CCCceEEEEEeecccccCCCEEEEccCCC-------ce--eeeEEEeEEEeeccceeecceecCCCEEE
Q 005713 297 EYD--------EHKGRIAIGRLHAGVLRKGMEVRVCTSED-------SC--RYARISELFVYEKFSRVSAEIVAAGDICA 359 (681)
Q Consensus 297 ~~d--------~~~G~v~~grV~sG~lk~gd~v~~~~~~~-------~~--~~~kV~~i~~~~g~~~~~v~~a~aGdiv~ 359 (681)
++. ++.|.++.|+|.+|+|++||.|.+.|.+. .+ ...+|++|.. ++.++++|.|||.|+
T Consensus 219 f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~----~~~~~~~a~~G~~v~ 294 (411)
T PRK04000 219 FDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRA----GGEKVEEARPGGLVG 294 (411)
T ss_pred eeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEE----CCEECCEEcCCCEEE
Confidence 854 34678999999999999999999998752 00 1248999954 457899999999999
Q ss_pred Ee-----cc--cccccCCeeeccCC
Q 005713 360 VC-----GI--DDIQIGETIADKVS 377 (681)
Q Consensus 360 i~-----gl--~~~~~Gdtl~~~~~ 377 (681)
|+ ++ .++..|++||+.+.
T Consensus 295 i~l~~~~~i~~~~i~~G~vl~~~~~ 319 (411)
T PRK04000 295 VGTKLDPSLTKADALAGSVAGKPGT 319 (411)
T ss_pred EEeccCCCCCHHHccCccEEEcCCC
Confidence 95 33 35788999998754
No 48
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9e-34 Score=289.30 Aligned_cols=283 Identities=24% Similarity=0.295 Sum_probs=229.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccc------------ccee-----eeeeccchhhcccceeEEeeeeEEeeC
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN------------QTVK-----ERIMDSNDLERERGITILSKNTSITYN 150 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~------------~~~~-----~~~~D~~~~E~erGiTi~~~~~~~~~~ 150 (681)
...+++.+|++|.|||||+.+||+.+..+... ++.. .-.+|..+.|||.||||+.....|..+
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 46789999999999999999999987653211 1110 347899999999999999999999999
Q ss_pred CeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCE-EEEEEeecCCCCCCcccchhhHH
Q 005713 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSARPDYVINSTF 229 (681)
Q Consensus 151 ~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip-~ivviNKiD~~~~~~~~~~~ei~ 229 (681)
..++.|.|||||+.|...+....+.||.+|++|||..|+..||++|...+.-+|++ +++++||||+.+.+ ++..++|.
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~-e~~F~~I~ 163 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYS-EEVFEAIV 163 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccC-HHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999986 78889999998764 44455555
Q ss_pred HHHHHhhcccccCCceEEEeecccCCCCCCCC-CCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCceEEEE
Q 005713 230 ELFIELNATDEQCDFQAIYASGIQGKAGLSPD-NLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIG 308 (681)
Q Consensus 230 ~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~-~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~g 308 (681)
..|..+...-......++|+||+.|.|+...+ .+.|.-.+-|-.+++.+.........||+++|..+.....-=|-..|
T Consensus 164 ~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v~i~~~~~~~~~RfPVQ~V~Rp~~dfRGyaG 243 (431)
T COG2895 164 ADYLAFAAQLGLKDVRFIPISALLGDNVVSKSENMPWYKGPTLLEILETVEIADDRSAKAFRFPVQYVNRPNLDFRGYAG 243 (431)
T ss_pred HHHHHHHHHcCCCcceEEechhccCCcccccccCCCcccCccHHHHHhhccccccccccceeeceEEecCCCCcccccce
Confidence 54444333322223469999999999987765 56677777666777777766666678899999988764432245678
Q ss_pred EeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEeccc--ccccCCeeeccCCC
Q 005713 309 RLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGID--DIQIGETIADKVSG 378 (681)
Q Consensus 309 rV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~--~~~~Gdtl~~~~~~ 378 (681)
+|.+|++++||.|.+.|++... +|++|..|.| +.++|.||+-|.+.--+ |+..||.|+..+.+
T Consensus 244 tiasG~v~~Gd~vvvlPsG~~s---~V~~Ivt~dg----~~~~A~aG~aVtl~L~deidisRGd~i~~~~~~ 308 (431)
T COG2895 244 TIASGSVKVGDEVVVLPSGKTS---RVKRIVTFDG----ELAQASAGEAVTLVLADEIDISRGDLIVAADAP 308 (431)
T ss_pred eeeccceecCCeEEEccCCCee---eEEEEeccCC----chhhccCCceEEEEEcceeecccCcEEEccCCC
Confidence 9999999999999999999876 9999998876 46889999999996544 67889999987654
No 49
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=8.8e-33 Score=313.74 Aligned_cols=300 Identities=23% Similarity=0.326 Sum_probs=235.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCe-EEEEEeCCCccchh
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDT-KINIIDTPGHSDFG 166 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~-~i~iiDTPGh~df~ 166 (681)
+.++|+++||+|||||||+++|.+..... ...+|+|+......+.|++. .++|||||||.+|.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~----------------~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~ 149 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQ----------------GEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT 149 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccc----------------ccCCceeecceEEEEEECCCcEEEEEECCCCcchh
Confidence 56789999999999999999997643321 11248888888888888665 99999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcc--cccCCc
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT--DEQCDF 244 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~--~~~~~~ 244 (681)
..+.++++.+|++|||+|+.+|.++||.+++..+...++|+++++||+|+.+++++++..++.+ .+.. ....++
T Consensus 150 ~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~----~g~~~~~~~~~~ 225 (587)
T TIGR00487 150 SMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSE----YGLVPEDWGGDT 225 (587)
T ss_pred hHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHH----hhhhHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999999987665544443332 2211 111246
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHhh--CCCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEE
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRC--IPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVR 322 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~--lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~ 322 (681)
+++++||++|. |+.+|++.+... ++.+..+++.|+++.|++++++++.|++++++|++|+|++||.|.
T Consensus 226 ~~v~iSAktGe----------GI~eLl~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd~iv 295 (587)
T TIGR00487 226 IFVPVSALTGD----------GIDELLDMILLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGDIVV 295 (587)
T ss_pred eEEEEECCCCC----------ChHHHHHhhhhhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCCEEE
Confidence 89999999999 889999988642 344445667899999999999999999999999999999999999
Q ss_pred EccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEeccccc-ccCCeeeccCCC-----------------------
Q 005713 323 VCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDI-QIGETIADKVSG----------------------- 378 (681)
Q Consensus 323 ~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~-~~Gdtl~~~~~~----------------------- 378 (681)
+.+.. .||+.|+...| ..+++|.||++|.|.|++++ ..||++....+.
T Consensus 296 ~~~~~-----~kVr~l~~~~g---~~v~~a~~g~~v~i~Gl~~~p~aGd~~~~~~~e~~a~~~~~~r~~~~~~~~~~~~~ 367 (587)
T TIGR00487 296 VGAAY-----GRVRAMIDENG---KSVKEAGPSKPVEILGLSDVPAAGDEFIVFKDEKDARLVAEKRAGKLRQKALSRSV 367 (587)
T ss_pred ECCCc-----cEEEEEECCCC---CCCCEECCCCEEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 87642 48888875443 57899999999999999987 789999742211
Q ss_pred -CCCCCCc-----cCCCeeeEEEeecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEEC
Q 005713 379 -KPLPSIK-----VEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADG 434 (681)
Q Consensus 379 -~~l~~~~-----~~~P~~~~~~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~ 434 (681)
..+..+. -..|.+.+.+.+.+ .| +.+.|.+.|.++..+++.++|-..
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~viikad~---~G------s~eal~~~l~~~~~~~~~~~v~~~ 420 (587)
T TIGR00487 368 KVTLDNLFEQIKEGELKELNIILKADV---QG------SLEAIKNSLEKLNNEEVKVKVIHS 420 (587)
T ss_pred ccchhHhhhhhhccCCceEEEEEEeCC---cc------hHHHHHHHHHhhcccCCeEEEEEe
Confidence 0011111 12367777777654 12 257899999998888888887654
No 50
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=6.1e-33 Score=305.21 Aligned_cols=259 Identities=25% Similarity=0.311 Sum_probs=208.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEee------------------
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY------------------ 149 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~------------------ 149 (681)
...||+++||+|||||||+++|.. ..+|.+++|++||+|+......+.+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~-------------~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTG-------------VWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVC 69 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhC-------------eecccCHhHHHcCceeEecccccccccccccCccccccccccc
Confidence 457899999999999999999943 2368899999999999887554431
Q ss_pred --------CCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCC-chhhHHHHHHHHHcCC-EEEEEEeecCCCCC
Q 005713 150 --------NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEFGH-AVVVVVNKIDRPSA 219 (681)
Q Consensus 150 --------~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~~gi-p~ivviNKiD~~~~ 219 (681)
.+..++|||||||.+|...+...+..+|++|||||+.+|. ..|+++++..+...++ |+++|+||+|+.+.
T Consensus 70 ~~~~~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 70 PNCGSETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSK 149 (406)
T ss_pred cccccccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCH
Confidence 1468999999999999999999999999999999999998 8999999999988876 58999999998753
Q ss_pred C-cccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeee
Q 005713 220 R-PDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEY 298 (681)
Q Consensus 220 ~-~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~ 298 (681)
+ .....+++.+++... ....+|++++||++|. |+..|++.|...+|+|..+.+.||+++|++++.
T Consensus 150 ~~~~~~~~~i~~~l~~~----~~~~~~ii~vSA~~g~----------gi~~L~e~L~~~l~~~~~~~~~~~~~~I~~~f~ 215 (406)
T TIGR03680 150 EKALENYEEIKEFVKGT----VAENAPIIPVSALHNA----------NIDALLEAIEKFIPTPERDLDKPPLMYVARSFD 215 (406)
T ss_pred HHHHHHHHHHHhhhhhc----ccCCCeEEEEECCCCC----------ChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEe
Confidence 2 112234444433221 1225789999999999 899999999999998877788999999999885
Q ss_pred c--------CCCceEEEEEeecccccCCCEEEEccCCCc-------e--eeeEEEeEEEeeccceeecceecCCCEEEEe
Q 005713 299 D--------EHKGRIAIGRLHAGVLRKGMEVRVCTSEDS-------C--RYARISELFVYEKFSRVSAEIVAAGDICAVC 361 (681)
Q Consensus 299 d--------~~~G~v~~grV~sG~lk~gd~v~~~~~~~~-------~--~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~ 361 (681)
. ++.|.++.|+|.+|+|++||.|.+.|.+.. . ...+|++|.. ++.++++|.|||.|+|.
T Consensus 216 v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~----~~~~~~~a~~G~~v~i~ 291 (406)
T TIGR03680 216 VNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRA----GGYKVEEARPGGLVGVG 291 (406)
T ss_pred ecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEE----CCEECCEEcCCCEEEEe
Confidence 4 346789999999999999999999987421 0 1248999954 45789999999999983
Q ss_pred -----cc--cccccCCeeeccCC
Q 005713 362 -----GI--DDIQIGETIADKVS 377 (681)
Q Consensus 362 -----gl--~~~~~Gdtl~~~~~ 377 (681)
++ .++..|++|++.+.
T Consensus 292 l~~~~~i~~~dv~~G~vl~~~~~ 314 (406)
T TIGR03680 292 TKLDPALTKADALAGQVVGKPGT 314 (406)
T ss_pred eccCCCCCHHHcccccEEEcCCC
Confidence 33 36778999998653
No 51
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=9.2e-33 Score=315.02 Aligned_cols=251 Identities=25% Similarity=0.292 Sum_probs=208.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~ 170 (681)
+|+++||+|||||||+++|++.. +|..+.|+++|+|++.....+.+++..++|||||||.+|...+.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~-------------~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~ 68 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIA-------------ADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAI 68 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc-------------CcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHH
Confidence 79999999999999999997532 35667889999999999888999999999999999999999999
Q ss_pred HHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCE-EEEEEeecCCCCCC-cccchhhHHHHHHHhhcccccCCceEEE
Q 005713 171 RILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSAR-PDYVINSTFELFIELNATDEQCDFQAIY 248 (681)
Q Consensus 171 ~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip-~ivviNKiD~~~~~-~~~~~~ei~~~~~~l~~~~~~~~~pvi~ 248 (681)
.++..+|++|+|||+.+|+++||.+++..+...++| +|+|+||+|+.+.+ .+.+.+++.+++...+.. .++|+++
T Consensus 69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~---~~~~ii~ 145 (581)
T TIGR00475 69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFL---KNAKIFK 145 (581)
T ss_pred hhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCC---CCCcEEE
Confidence 999999999999999999999999999999999999 99999999997532 223344555555443221 1468999
Q ss_pred eecccCCCCCCCCCCCCCcchhHHHHHhhCCCCcc-ccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCC
Q 005713 249 ASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI-EKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSE 327 (681)
Q Consensus 249 ~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~-~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~ 327 (681)
+||++|. |+..+++.+...+..... ..++||+++|.+++..++.|+++.|+|.+|++++||+|.+.|.+
T Consensus 146 vSA~tG~----------GI~eL~~~L~~l~~~~~~~~~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P~~ 215 (581)
T TIGR00475 146 TSAKTGQ----------GIGELKKELKNLLESLDIKRIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLPIN 215 (581)
T ss_pred EeCCCCC----------CchhHHHHHHHHHHhCCCcCcCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECCCC
Confidence 9999999 777777776654432211 24789999999999999999999999999999999999999988
Q ss_pred CceeeeEEEeEEEeeccceeecceecCCCEEEE--eccc--ccccCCeeec
Q 005713 328 DSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGID--DIQIGETIAD 374 (681)
Q Consensus 328 ~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~~Gdtl~~ 374 (681)
... +|++|+. +..++++|.|||.|+| .|++ ++..|..+++
T Consensus 216 ~~~---~Vr~iq~----~~~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~ 259 (581)
T TIGR00475 216 HEV---RVKAIQA----QNQDVEIAYAGQRIALNLMDVEPESLKRGLLILT 259 (581)
T ss_pred ceE---EEeEEEE----CCccCCEEECCCEEEEEeCCCCHHHcCCceEEcC
Confidence 665 9999964 4578999999999999 4554 6888966654
No 52
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=7.1e-32 Score=309.97 Aligned_cols=253 Identities=24% Similarity=0.331 Sum_probs=202.9
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEee----CCeEEEEEeCCCc
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY----NDTKINIIDTPGH 162 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~----~~~~i~iiDTPGh 162 (681)
.+.++|+|+||+|||||||+++|....+... ..+|+|.....+.+.| .+..++|||||||
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~----------------e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh 305 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQK----------------EAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH 305 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccc----------------cCCccccccceEEEEEEecCCceEEEEEECCcH
Confidence 4678999999999999999999987554321 1247777665555555 3589999999999
Q ss_pred cchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 163 SDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 163 ~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
.+|...+.++++.+|++|||||+.+|++.||.++|..+...++|+|||+||+|+..++++.+..++... .+.......
T Consensus 306 e~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~--~ll~e~~g~ 383 (742)
T CHL00189 306 EAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKY--NLIPEKWGG 383 (742)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHh--ccchHhhCC
Confidence 999999999999999999999999999999999999999999999999999999876544444433221 000111112
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC--CCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCE
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP--GPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGME 320 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp--~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~ 320 (681)
.+|++++||++|. |+..|++.|..... ....+++.|+.+.|+++..+++.|++++++|++|+|++||.
T Consensus 384 ~vpvv~VSAktG~----------GIdeLle~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGtLr~GD~ 453 (742)
T CHL00189 384 DTPMIPISASQGT----------NIDKLLETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGTLHIGDI 453 (742)
T ss_pred CceEEEEECCCCC----------CHHHHHHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCEEecCCE
Confidence 4799999999999 99999999887542 33345678999999999999999999999999999999999
Q ss_pred EEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEecc-cccccCCeeecc
Q 005713 321 VRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGI-DDIQIGETIADK 375 (681)
Q Consensus 321 v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl-~~~~~Gdtl~~~ 375 (681)
|.+.+. ..+|..|+ +....++++|.|||+|+|.|+ +...+||+|...
T Consensus 454 vv~g~~-----~gkVr~m~---~~~~~~v~~a~pgdiV~I~gl~~~~~~Gd~l~v~ 501 (742)
T CHL00189 454 IVIGTS-----YAKIRGMI---NSLGNKINLATPSSVVEIWGLSSVPATGEHFQVF 501 (742)
T ss_pred EEECCc-----ceEEEEEE---cCCCcCccEEcCCCceEecCcccCCCCCCEEEEe
Confidence 988763 23666664 556678999999999999999 457789999643
No 53
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=1.7e-31 Score=282.06 Aligned_cols=250 Identities=23% Similarity=0.310 Sum_probs=217.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~ 170 (681)
.|+..||.+||||||+.++.+. ..|..++|++||+|++.....+..+++.+.|||+|||++|...+.
T Consensus 2 ii~t~GhidHgkT~L~~altg~-------------~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~mi 68 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGG-------------VTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLL 68 (447)
T ss_pred eEEEeeeeeccchhhhhhhccc-------------ccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHH
Confidence 4789999999999999998653 347889999999999999999999999999999999999999999
Q ss_pred HHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEE-EEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceEEEe
Q 005713 171 RILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAV-VVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYA 249 (681)
Q Consensus 171 ~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~-ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~ 249 (681)
..+...|+++||||+.+|++.||.+++..+..+|++- ++|+||+|+.+.. ++.+.++..+..+. ..+.|+|.+
T Consensus 69 ag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~--r~e~~i~~Il~~l~----l~~~~i~~~ 142 (447)
T COG3276 69 AGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEA--RIEQKIKQILADLS----LANAKIFKT 142 (447)
T ss_pred hhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHH--HHHHHHHHHHhhcc----ccccccccc
Confidence 9999999999999999999999999999999999875 9999999987531 22233333333332 335678999
Q ss_pred ecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCc
Q 005713 250 SGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDS 329 (681)
Q Consensus 250 SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~ 329 (681)
|+++|. |+++|-+.|.+....+..+.+.||+++|.+.+..+++|+|++|.++||++++||.+++.|.+..
T Consensus 143 s~~~g~----------GI~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~~k~ 212 (447)
T COG3276 143 SAKTGR----------GIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPINKE 212 (447)
T ss_pred ccccCC----------CHHHHHHHHHHhhhhhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecCCCe
Confidence 999999 9999999998877656778899999999999999999999999999999999999999999998
Q ss_pred eeeeEEEeEEEeeccceeecceecCCCEEEEe--cc--cccccCCeeeccC
Q 005713 330 CRYARISELFVYEKFSRVSAEIVAAGDICAVC--GI--DDIQIGETIADKV 376 (681)
Q Consensus 330 ~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~--gl--~~~~~Gdtl~~~~ 376 (681)
. +|++|+ .+.+++++|.||+.|+++ |. +++..||.|.+++
T Consensus 213 v---~VRsIq----~~d~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~ 256 (447)
T COG3276 213 V---RVRSIQ----AHDVDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPE 256 (447)
T ss_pred E---EEEeee----ecCcchhhccccceeeeecCCCCHHHhhcccEeccCC
Confidence 7 999994 556789999999999994 54 4789999998765
No 54
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.97 E-value=4.9e-31 Score=265.94 Aligned_cols=190 Identities=39% Similarity=0.582 Sum_probs=157.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC----------CeEEEEEeC
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN----------DTKINIIDT 159 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~----------~~~i~iiDT 159 (681)
|||+|+||++||||||+++|+...+.+........++||+.+.|++||+|+.+....+.|. ++.++||||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 7999999999999999999999988766554445789999999999999999988877776 788999999
Q ss_pred CCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCC----CCcccchhhHHHHHHHh
Q 005713 160 PGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS----ARPDYVINSTFELFIEL 235 (681)
Q Consensus 160 PGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~----~~~~~~~~ei~~~~~~l 235 (681)
|||.+|..++..+++.+|++|+|||+.+|+..+|+++++.+...++|+++|+||+|+.. ..+++....+.+.+.++
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~~~~~~~~ii~~~ 160 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQRLARIIEQV 160 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999862 23334444444433333
Q ss_pred hc-------------ccccCCc-e----EEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 236 NA-------------TDEQCDF-Q----AIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 236 ~~-------------~~~~~~~-p----vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
.. .+++..+ | |+|+||+.||+. .+. ....+.++|+.|++++|+|
T Consensus 161 n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f-~~~-~f~~~~~~~~~~~~~~~~p 222 (222)
T cd01885 161 NAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGF-TII-KFARIYAVLEMVVKHLPSP 222 (222)
T ss_pred hHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEe-ccc-cccchHHHHHHHHhhCCCC
Confidence 22 1123344 6 999999999976 333 3346789999999999987
No 55
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.97 E-value=7.4e-31 Score=259.19 Aligned_cols=182 Identities=37% Similarity=0.501 Sum_probs=157.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCcccccccee--eeeeccchhhcccceeEEeeeeEEe--eCCeEEEEEeCCCcc
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK--ERIMDSNDLERERGITILSKNTSIT--YNDTKINIIDTPGHS 163 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~--~~~~~i~iiDTPGh~ 163 (681)
+++||+++||+|||||||+++|++..+.....+... .+.+|..+.|+++|+|+......+. +.++.++|+|||||.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 589999999999999999999999887665433221 4578999999999999999999999 999999999999999
Q ss_pred chhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHH-HHhhcccccC
Q 005713 164 DFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELF-IELNATDEQC 242 (681)
Q Consensus 164 df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~-~~l~~~~~~~ 242 (681)
+|..++.++++.+|++|+|||+.+|+..++.+++..+..+++|+|||+||+|+...++.+..+++.+.+ +...... ..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~-~~ 160 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG-EE 160 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT-TS
T ss_pred ceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc-cc
Confidence 999999999999999999999999999999999999999999999999999999666777777777444 4443321 13
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
.+|++++||++|+ |+..|++++.+++|+
T Consensus 161 ~~~vi~~Sa~~g~----------gi~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 161 IVPVIPISALTGD----------GIDELLEALVELLPS 188 (188)
T ss_dssp TEEEEEEBTTTTB----------THHHHHHHHHHHS--
T ss_pred cceEEEEecCCCC----------CHHHHHHHHHHhCcC
Confidence 6899999999999 999999999999985
No 56
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.96 E-value=2.5e-29 Score=249.32 Aligned_cols=191 Identities=29% Similarity=0.388 Sum_probs=157.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
..||+++||+|||||||+++|++..............++|..+.|++||+|+......+.+++..++|+|||||.+|..+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 46899999999999999999998643221111122457999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCE-EEEEEeecCCCCCC--cccchhhHHHHHHHhhcccccCCce
Q 005713 169 VERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSAR--PDYVINSTFELFIELNATDEQCDFQ 245 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip-~ivviNKiD~~~~~--~~~~~~ei~~~~~~l~~~~~~~~~p 245 (681)
+.+++..+|++++|+|+.+|+..++++++..+.+.++| +|+|+||+|+.... .+.+.+++...+..++... .++|
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~--~~v~ 159 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG--DNTP 159 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc--cCCe
Confidence 99999999999999999999999999999999999997 77999999986321 2335556777777666542 2689
Q ss_pred EEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 246 vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
++++||++|.|..+...+.+++..|+++|...+|+|
T Consensus 160 iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~~~~~ 195 (195)
T cd01884 160 IVRGSALKALEGDDPNKWVKKILELLDALDSYIPTP 195 (195)
T ss_pred EEEeeCccccCCCCCCcchhcHhHHHHHHHhCCCCC
Confidence 999999999987653334445789999998887765
No 57
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.2e-29 Score=267.86 Aligned_cols=251 Identities=29% Similarity=0.407 Sum_probs=207.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEee-CCeEEEEEeCCCccchh
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY-NDTKINIIDTPGHSDFG 166 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~i~iiDTPGh~df~ 166 (681)
+.+.|-|+||+|||||||+++|-+...+.... .|||.....+.+.. ++.+++|+|||||+-|.
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~----------------GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~ 215 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEA----------------GGITQHIGAFTVTLPSGKSITFLDTPGHAAFS 215 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhc----------------CCccceeceEEEecCCCCEEEEecCCcHHHHH
Confidence 56789999999999999999997754432222 28888877776655 46899999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceE
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQA 246 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pv 246 (681)
.+..+..+.+|.++|||.|.+|+++||.+.++.++..++|+||++||||+++++++.+..++... .+...+-.-++++
T Consensus 216 aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~--gi~~E~~GGdVQv 293 (683)
T KOG1145|consen 216 AMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQ--GIVVEDLGGDVQV 293 (683)
T ss_pred HHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHc--CccHHHcCCceeE
Confidence 99999999999999999999999999999999999999999999999999999988887766542 1222233347899
Q ss_pred EEeecccCCCCCCCCCCCCCcchhHHHHHhhC--CCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEc
Q 005713 247 IYASGIQGKAGLSPDNLADDLGPLFESIMRCI--PGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVC 324 (681)
Q Consensus 247 i~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l--p~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~ 324 (681)
+++||++|. |+..|.++++-.. -.-+.++.+|+.+.|....-+++.|.+++.-|-.|||++|+.+...
T Consensus 294 ipiSAl~g~----------nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkKG~vlV~G 363 (683)
T KOG1145|consen 294 IPISALTGE----------NLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKKGSVLVAG 363 (683)
T ss_pred EEeecccCC----------ChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccceeEEEEeccccccccEEEEe
Confidence 999999999 8888877775322 2223467899999999999999999999999999999999987764
Q ss_pred cCCCceeeeEEEeEEEeeccceeecceecCCCEEEEeccccccc-CCeeec
Q 005713 325 TSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQI-GETIAD 374 (681)
Q Consensus 325 ~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~-Gdtl~~ 374 (681)
. ..+||+.|+-.+ .+++++|.||.-|.|.|++++.+ ||-+..
T Consensus 364 ~-----~w~KVr~l~D~n---Gk~i~~A~Ps~pv~V~GwkdlP~aGD~vle 406 (683)
T KOG1145|consen 364 K-----SWCKVRALFDHN---GKPIDEATPSQPVEVLGWKDLPIAGDEVLE 406 (683)
T ss_pred c-----hhhhhhhhhhcC---CCCccccCCCCceEeecccCCCCCCceEEE
Confidence 2 246999997544 46899999999999999998755 888754
No 58
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.96 E-value=6.2e-29 Score=253.87 Aligned_cols=181 Identities=38% Similarity=0.575 Sum_probs=160.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCcccccccee--eeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK--ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
||+++||+|+|||||+++|++.++.+...+.+. ++++|+.+.|++||+|+......+.|++++++|||||||.+|..+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 799999999999999999999988776555443 578999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHh-------------
Q 005713 169 VERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIEL------------- 235 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l------------- 235 (681)
+.++++.+|++++|+|+.+|...++..+|+.+...++|+++|+||+|+..++++++++++++.|..-
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~~~~~~ 160 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVGLAPNI 160 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCcEeeee
Confidence 9999999999999999999999999999999999999999999999999888888888888765320
Q ss_pred --------------hcccc---------------------------cCCceEEEeecccCCCCCCCCCCCCCcchhHHHH
Q 005713 236 --------------NATDE---------------------------QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESI 274 (681)
Q Consensus 236 --------------~~~~~---------------------------~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I 274 (681)
...++ ..-+||+++||.++. |+..||+.|
T Consensus 161 ~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~----------Gv~~ll~~~ 230 (237)
T cd04168 161 CETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGI----------GIEELLEGI 230 (237)
T ss_pred eeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCc----------CHHHHHHHH
Confidence 00000 012799999999999 999999999
Q ss_pred HhhCCCC
Q 005713 275 MRCIPGP 281 (681)
Q Consensus 275 ~~~lp~p 281 (681)
.+++|+|
T Consensus 231 ~~~~p~~ 237 (237)
T cd04168 231 TKLFPTS 237 (237)
T ss_pred HHhcCCC
Confidence 9999987
No 59
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.96 E-value=2.2e-28 Score=242.71 Aligned_cols=194 Identities=69% Similarity=1.099 Sum_probs=173.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
.+|||+++|++++|||||+++|+...+.+.....+..+++|..+.|+.+|+|+......+.+++..++|||||||.+|..
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 80 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGG 80 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHH
Confidence 37899999999999999999999876666555555578899999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceEE
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAI 247 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi 247 (681)
.+..+++.+|++++|+|++++...++..++..+...++|+++|+||+|+...+.+...+++.+.+..++...++..+|++
T Consensus 81 ~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 160 (194)
T cd01891 81 EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVL 160 (194)
T ss_pred HHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEE
Confidence 99999999999999999999988888888888888899999999999998777667777888877666655556678999
Q ss_pred EeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 248 YASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 248 ~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
++||++|+++.+......++.+|++.|..++|.|
T Consensus 161 ~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (194)
T cd01891 161 YASAKNGWASLNLEDPSEDLEPLFDTIIEHVPAP 194 (194)
T ss_pred EeehhccccccccccchhhHHHHHHHHHhcCCCC
Confidence 9999999999888888889999999999999976
No 60
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=4.7e-28 Score=262.40 Aligned_cols=252 Identities=25% Similarity=0.329 Sum_probs=205.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC---CeEEEEEeCCCccc
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN---DTKINIIDTPGHSD 164 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---~~~i~iiDTPGh~d 164 (681)
+.+-|+++||+|||||||++.+-+..-.... ..|||.....+.+.+. ...|+|+|||||+-
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~E----------------aGGITQhIGA~~v~~~~~~~~~itFiDTPGHeA 67 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGE----------------AGGITQHIGAYQVPLDVIKIPGITFIDTPGHEA 67 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCcccccc----------------CCceeeEeeeEEEEeccCCCceEEEEcCCcHHH
Confidence 4577999999999999999999665433222 2389999999999984 46999999999999
Q ss_pred hhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCc
Q 005713 165 FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (681)
Q Consensus 165 f~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~ 244 (681)
|..+..+..+.+|.++||||+.+|+++||.+.++.++..++|++|++||+|+++++++.+..++.+. .+......-+.
T Consensus 68 Ft~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~--gl~~E~~gg~v 145 (509)
T COG0532 68 FTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEY--GLVPEEWGGDV 145 (509)
T ss_pred HHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHc--CCCHhhcCCce
Confidence 9999999999999999999999999999999999999999999999999999999988777776653 22233333457
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC--CCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEE
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI--PGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVR 322 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l--p~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~ 322 (681)
.++++||++|. |+.+||+.++-.. -.-+.+++.+....|....-+++.|.++..-|++|+|++||.|.
T Consensus 146 ~~VpvSA~tg~----------Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~GD~iv 215 (509)
T COG0532 146 IFVPVSAKTGE----------GIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKKGDIIV 215 (509)
T ss_pred EEEEeeccCCC----------CHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCeEecCCEEE
Confidence 89999999999 8999998876422 12234667899999999999999999999999999999999999
Q ss_pred EccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEeccccccc-CCeeecc
Q 005713 323 VCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQI-GETIADK 375 (681)
Q Consensus 323 ~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~-Gdtl~~~ 375 (681)
.....+ +|..++. ....+++++.++--+.+.|++++.. ||.....
T Consensus 216 ~g~~~g-----~I~t~v~---~~~~~i~~a~ps~~v~i~g~~evp~Ag~~~~v~ 261 (509)
T COG0532 216 AGGEYG-----RVRTMVD---DLGKPIKEAGPSKPVEILGLSEVPAAGDVFIVV 261 (509)
T ss_pred EccCCC-----ceEEeeh---hcCCCccccCCCCCeEEeccccccccCceEEec
Confidence 987655 5666643 3445677888887788888876544 6666543
No 61
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.96 E-value=1.2e-28 Score=256.08 Aligned_cols=142 Identities=42% Similarity=0.559 Sum_probs=130.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCcccccccee--eeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK--ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
||+|+||+|+|||||+++|++.++.+...+.+. ++++|+.+.|++||+|+.+....+.|++++++|||||||.+|..+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 799999999999999999999888766544443 789999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHH
Q 005713 169 VERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELF 232 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~ 232 (681)
+.++++.+|++|+|+|+.+|+..++..+|+.+...++|+++|+||+|+.+++++.+++++++.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l 144 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKL 144 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998877777777776654
No 62
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.96 E-value=3.4e-28 Score=250.05 Aligned_cols=278 Identities=23% Similarity=0.339 Sum_probs=226.2
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--------------
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND-------------- 151 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-------------- 151 (681)
.....+|+..||+|||||||+..|...... +.......++|..+.|-+||.|-+.+..-+.+++
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~D--DG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE 191 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLD--DGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE 191 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCC--CCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence 445678999999999999999998754322 2111224688999999999988777766665543
Q ss_pred ---------eEEEEEeCCCccchhHHHHHHH--hhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCC-CC
Q 005713 152 ---------TKINIIDTPGHSDFGGEVERIL--NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP-SA 219 (681)
Q Consensus 152 ---------~~i~iiDTPGh~df~~e~~~~l--~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~-~~ 219 (681)
.-+.|+||-||+.|...+.+.+ ...|+.+|+|.|.+|++..|++|+..+...++|+||+++|+|+. +.
T Consensus 192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~dd 271 (527)
T COG5258 192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPDD 271 (527)
T ss_pred HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcHH
Confidence 2478999999999998888876 45899999999999999999999999999999999999999996 55
Q ss_pred CcccchhhHHHHHHHhhcc------------------cccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 220 RPDYVINSTFELFIELNAT------------------DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 220 ~~~~~~~ei~~~~~~l~~~------------------~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
++..+++++..+++-.+.- ....-.|+|++|+.+|. |+ ++|+.+...+|..
T Consensus 272 r~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~----------Gl-dlL~e~f~~Lp~r 340 (527)
T COG5258 272 RFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGE----------GL-DLLDEFFLLLPKR 340 (527)
T ss_pred HHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCc----------cH-HHHHHHHHhCCcc
Confidence 6788888888877643211 11224799999999998 65 5667777788877
Q ss_pred c-cccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCC-CceeeeEEEeEEEeeccceeecceecCCCEEE
Q 005713 282 R-IEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSE-DSCRYARISELFVYEKFSRVSAEIVAAGDICA 359 (681)
Q Consensus 282 ~-~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~-~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~ 359 (681)
. .+..+||.|+|.+++...++|+++.|.|.+|.++.||+|++.|-. +++...+|++| .+++..+++|.||+|++
T Consensus 341 r~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G~fr~v~vkSI----emh~~rvdsa~aG~iig 416 (527)
T COG5258 341 RRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDGKFREVVVKSI----EMHHYRVDSAKAGSIIG 416 (527)
T ss_pred cccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCCcEEEEEEEEE----EEeeEEeccccCCcEEE
Confidence 3 467889999999999999999999999999999999999998765 67777899999 57788999999999999
Q ss_pred E--eccc--ccccCCeeeccCCCCC
Q 005713 360 V--CGID--DIQIGETIADKVSGKP 380 (681)
Q Consensus 360 i--~gl~--~~~~Gdtl~~~~~~~~ 380 (681)
+ .|++ .+..|.+|+....|.+
T Consensus 417 ~Al~gv~~e~lerGMVl~~~~~pka 441 (527)
T COG5258 417 IALKGVEKEELERGMVLSAGADPKA 441 (527)
T ss_pred EEecccCHHHHhcceEecCCCCchh
Confidence 8 4765 4899999987534433
No 63
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.96 E-value=4e-28 Score=252.03 Aligned_cols=144 Identities=34% Similarity=0.549 Sum_probs=131.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccce------eeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTV------KERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~------~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh 162 (681)
+|||+|+||+|+|||||+++|++.++.+...+.+ .++++|+.+.|++||+|+......+.|++++++|||||||
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 6999999999999999999999998887766544 3568999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHH
Q 005713 163 SDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELF 232 (681)
Q Consensus 163 ~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~ 232 (681)
.+|..++..+++.+|++|+|+|++.++..++..+|+.+...++|+++|+||+|+..+++.++++++++.+
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l 151 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEEL 151 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988999999999999998887766666766644
No 64
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.96 E-value=1.4e-27 Score=271.87 Aligned_cols=274 Identities=21% Similarity=0.227 Sum_probs=190.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccce----eeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCcc
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTV----KERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS 163 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~----~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~ 163 (681)
+.+.|+++||+|||||||+++|.+........+.. ...+.+....++..|.+.......+.+. .++|||||||.
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~iDTPG~e 82 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIP--GLLFIDTPGHE 82 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccC--CEEEEECCChH
Confidence 45679999999999999999997654332222211 1111111111111121111100111111 37999999999
Q ss_pred chhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCC-CCc---------------------
Q 005713 164 DFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS-ARP--------------------- 221 (681)
Q Consensus 164 df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~-~~~--------------------- 221 (681)
+|...+.+.++.+|++|||+|+.+|+..++.+++..+...++|+++++||+|+.. +..
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f 162 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQEL 162 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999852 110
Q ss_pred ccchhhHHHHHHHhhcccc--------cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHh----hCCCC-ccccCCc
Q 005713 222 DYVINSTFELFIELNATDE--------QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMR----CIPGP-RIEKDGA 288 (681)
Q Consensus 222 ~~~~~ei~~~~~~l~~~~~--------~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~----~lp~p-~~~~~~p 288 (681)
++.+.++...+.+.+...+ ..+++++++||++|. |+.+|++.+.. +++.+ ..+.+.|
T Consensus 163 ~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGe----------Gi~dLl~~i~~~~~~~l~~~l~~~~~~~ 232 (586)
T PRK04004 163 EEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGE----------GIPDLLMVLAGLAQRYLEERLKIDVEGP 232 (586)
T ss_pred HHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCC----------ChHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 0111112222232222221 235799999999999 88888887753 23332 3456789
Q ss_pred eEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeec--------cceeecceecCCCEEEE
Q 005713 289 LQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEK--------FSRVSAEIVAAGDICAV 360 (681)
Q Consensus 289 ~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g--------~~~~~v~~a~aGdiv~i 360 (681)
+++.|++++.+++.|++++|+|.+|+|++||.|.+.+.++.. ..+|++|+...+ .....+++|.|..-|-|
T Consensus 233 ~~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~~i-~~kVr~l~~~~~~~e~~~~~~~~~~~~~~~~~~~v~i 311 (586)
T PRK04004 233 GKGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGKDGPI-VTKVRALLKPRPLDEMRDPEDKFKPVDEVVAAAGVKI 311 (586)
T ss_pred eEEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcCCCcc-eEEEEEEecCcchhhccccccccccccccCCCCceEE
Confidence 999999999999999999999999999999999998887532 258999987632 13356667777665555
Q ss_pred --ecccccccCCeeec
Q 005713 361 --CGIDDIQIGETIAD 374 (681)
Q Consensus 361 --~gl~~~~~Gdtl~~ 374 (681)
.|++++..|+.+.-
T Consensus 312 ~~~gl~~~~~g~~~~v 327 (586)
T PRK04004 312 SAPDLEDALAGSPLRV 327 (586)
T ss_pred EeCCccccCCCCeEEE
Confidence 48888877887654
No 65
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.9e-28 Score=253.66 Aligned_cols=284 Identities=22% Similarity=0.308 Sum_probs=234.8
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccc---------------cceeeeeeccchhhcccceeEEeeeeEEeeC
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN---------------QTVKERIMDSNDLERERGITILSKNTSITYN 150 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~---------------~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~ 150 (681)
.....|+.++||+++||||+-+.++...+..... .-...|+||++.+||++|-|+......|+..
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 4568899999999999999999999887754321 1112789999999999999999999999999
Q ss_pred CeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCc-------hhhHHHHHHHHHcCC-EEEEEEeecCCCCC---
Q 005713 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPM-------PQTRFVLKKALEFGH-AVVVVVNKIDRPSA--- 219 (681)
Q Consensus 151 ~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~-------~qt~~~l~~~~~~gi-p~ivviNKiD~~~~--- 219 (681)
..+++|.|+|||..|...+....+.||.++||++|..|.+ .||+++..+++..++ ..|+++||||-+..
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs 235 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 235 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcc
Confidence 9999999999999999999999999999999999976543 499999999999997 57889999997632
Q ss_pred --CcccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCC--CCCCCcchhHHHHHhhCCCCccccCCceEEEEEE
Q 005713 220 --RPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPD--NLADDLGPLFESIMRCIPGPRIEKDGALQMLATN 295 (681)
Q Consensus 220 --~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~--~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~ 295 (681)
+++++.+.+...+..++... ..+..++++|+.+|.++.+.. ...|.-.++|-..++.+|....+.++||++.|.+
T Consensus 236 ~eRy~E~~~k~~~fLr~~g~n~-~~d~~f~p~sg~tG~~~k~~~~s~cpwy~gp~fl~~ld~l~~~~R~~~GP~~~pI~~ 314 (501)
T KOG0459|consen 236 NERYEECKEKLQPFLRKLGFNP-KPDKHFVPVSGLTGANVKDRTDSVCPWYKGPIFLEYLDELPHLERILNGPIRCPVAN 314 (501)
T ss_pred hhhHHHHHHHHHHHHHHhcccC-CCCceeeecccccccchhhcccccCCcccCCccceehhccCcccccCCCCEEeehhh
Confidence 45667777777777666543 235568999999999887655 3555555555445555888888999999999988
Q ss_pred eeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEE--eccc--ccccCCe
Q 005713 296 LEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGID--DIQIGET 371 (681)
Q Consensus 296 ~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~~Gdt 371 (681)
-+.| .|++++|+|.||++++||.+.++|.+... .|.+||. ..++++.+.|||.+-| .|++ ++..|-+
T Consensus 315 Kykd--mGTvv~GKvEsGsi~kg~~lvvMPnk~~v---eV~~I~~----ddvE~~~~~pGenvk~rlkgieeedi~~Gfi 385 (501)
T KOG0459|consen 315 KYKD--MGTVVGGKVESGSIKKGQQLVVMPNKTNV---EVLGIYS----DDVETDRVAPGENVKLRLKGIEEEDISPGFI 385 (501)
T ss_pred hccc--cceEEEEEecccceecCCeEEEccCCcce---EEEEEec----ccceeeeccCCcceEEEecccchhhccCceE
Confidence 7776 57999999999999999999999998776 7888852 3688999999999988 5765 7999999
Q ss_pred eeccCCCC
Q 005713 372 IADKVSGK 379 (681)
Q Consensus 372 l~~~~~~~ 379 (681)
||++.++.
T Consensus 386 L~~~~n~~ 393 (501)
T KOG0459|consen 386 LCSPNNPC 393 (501)
T ss_pred EecCCCcc
Confidence 99987743
No 66
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=3.9e-27 Score=237.85 Aligned_cols=255 Identities=27% Similarity=0.326 Sum_probs=202.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC-----------------
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN----------------- 150 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~----------------- 150 (681)
...||+++||+|||||||+.+|.+ -..|.+.+|-+|||||...+......
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsG-------------vwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C 75 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSG-------------VWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKC 75 (415)
T ss_pred cceEeeeeeecccchhhheehhhc-------------eeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCC
Confidence 468999999999999999999965 24578899999999998765543220
Q ss_pred ---------CeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCC-CCchhhHHHHHHHHHcCC-EEEEEEeecCCCCC
Q 005713 151 ---------DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVE-GPMPQTRFVLKKALEFGH-AVVVVVNKIDRPSA 219 (681)
Q Consensus 151 ---------~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~-g~~~qt~~~l~~~~~~gi-p~ivviNKiD~~~~ 219 (681)
-+.+.|+|+|||+-....+.+.....|++||||+|++ -+++||++||-.+.-.|+ .+|++-||+|+...
T Consensus 76 ~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~ 155 (415)
T COG5257 76 PNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSR 155 (415)
T ss_pred CCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecH
Confidence 0268999999999999999999999999999999998 589999999999999996 58888999999753
Q ss_pred C-cccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeee
Q 005713 220 R-PDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEY 298 (681)
Q Consensus 220 ~-~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~ 298 (681)
+ ..+-.++++++.+.-.+ -+.|++++||..+. |++.|+++|.+++|.|..+.+.|..|+|...|.
T Consensus 156 E~AlE~y~qIk~FvkGt~A----e~aPIIPiSA~~~~----------NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFD 221 (415)
T COG5257 156 ERALENYEQIKEFVKGTVA----ENAPIIPISAQHKA----------NIDALIEAIEKYIPTPERDLDKPPRMYVARSFD 221 (415)
T ss_pred HHHHHHHHHHHHHhccccc----CCCceeeehhhhcc----------CHHHHHHHHHHhCCCCccCCCCCceEEEEeecc
Confidence 2 23444555555543222 25699999999998 999999999999999999999999999988765
Q ss_pred c--------CCCceEEEEEeecccccCCCEEEEccCC-----Cce----eeeEEEeEEEeeccceeecceecCCCEEEE-
Q 005713 299 D--------EHKGRIAIGRLHAGVLRKGMEVRVCTSE-----DSC----RYARISELFVYEKFSRVSAEIVAAGDICAV- 360 (681)
Q Consensus 299 d--------~~~G~v~~grV~sG~lk~gd~v~~~~~~-----~~~----~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i- 360 (681)
. +..|-+.-|.+.+|.++.||++.+.|.= ++. ...+|.+|+ ....++++|.+|-.++|
T Consensus 222 VNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~----ag~~~~~ea~PGGLvgvG 297 (415)
T COG5257 222 VNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQ----AGGEDVEEARPGGLVGVG 297 (415)
T ss_pred cCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEE----eCCeeeeeccCCceEEEe
Confidence 3 3567788899999999999999987642 211 124667773 34567999999999999
Q ss_pred eccc-ccccCCeee
Q 005713 361 CGID-DIQIGETIA 373 (681)
Q Consensus 361 ~gl~-~~~~Gdtl~ 373 (681)
++++ .+..+|-|+
T Consensus 298 T~lDP~ltKaD~L~ 311 (415)
T COG5257 298 TKLDPTLTKADALV 311 (415)
T ss_pred cccCcchhhhhhhc
Confidence 6776 344455554
No 67
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=3.5e-27 Score=239.39 Aligned_cols=250 Identities=24% Similarity=0.299 Sum_probs=203.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC---------CeEEEEEeC
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN---------DTKINIIDT 159 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---------~~~i~iiDT 159 (681)
..|++++||+|+|||||..+|..... ....|.++..++||+|.+.....+... ...++++||
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~S---------TaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDC 77 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGS---------TAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDC 77 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhcc---------chhhccCCcccccceeEeecceeeecccccccCccccceeEEEeC
Confidence 48999999999999999999965432 234588888899999999876665432 246799999
Q ss_pred CCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCC-cccchhhHHH-HHHHhhc
Q 005713 160 PGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSAR-PDYVINSTFE-LFIELNA 237 (681)
Q Consensus 160 PGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~-~~~~~~ei~~-~~~~l~~ 237 (681)
|||+.....+.......|.++||||+..|.+.||.+++-.....-...+||+||+|....+ ....+++... .-+.+..
T Consensus 78 PGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~ 157 (522)
T KOG0461|consen 78 PGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLES 157 (522)
T ss_pred CCcHHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHHHHh
Confidence 9999999888888899999999999999999999999988888888899999999975331 1222222222 1122222
Q ss_pred ccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCceEEEEEeecccccC
Q 005713 238 TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRK 317 (681)
Q Consensus 238 ~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~ 317 (681)
....-+.|++++||+.|+- ...++.+|.+.+...+-.|..+.++||.|.|.+++..++.|++..|.|.+|.++.
T Consensus 158 t~f~g~~PI~~vsa~~G~~------~~~~i~eL~e~l~s~if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~~l 231 (522)
T KOG0461|consen 158 TGFDGNSPIVEVSAADGYF------KEEMIQELKEALESRIFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGVLRL 231 (522)
T ss_pred cCcCCCCceeEEecCCCcc------chhHHHHHHHHHHHhhcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeEEec
Confidence 2223357999999999952 2338899999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEE
Q 005713 318 GMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV 360 (681)
Q Consensus 318 gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i 360 (681)
|+.|.+..-+..- ||++| .+.+.++.+|.+||..++
T Consensus 232 n~~iE~PAL~e~r---kVKsl----qmf~~~vtsa~~GdR~g~ 267 (522)
T KOG0461|consen 232 NTEIEFPALNEKR---KVKSL----QMFKQRVTSAAAGDRAGF 267 (522)
T ss_pred CcEEeecccchhh---hhhhH----HHHhhhhhhhhcccceee
Confidence 9999998777654 89998 566678999999999988
No 68
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.95 E-value=2.4e-26 Score=260.79 Aligned_cols=259 Identities=27% Similarity=0.302 Sum_probs=187.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEee------------------
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY------------------ 149 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~------------------ 149 (681)
+.+.|+|+||+|||||||+++|.+........+ |+|.......+.+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~g----------------giTq~iG~~~v~~~~~~~~~~~~~~~~~v~~ 66 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAG----------------GITQHIGATEIPMDVIEGICGDLLKKFKIRL 66 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCC----------------ceecccCeeEeeecccccccccccccccccc
Confidence 356799999999999999999998754332222 2333222222211
Q ss_pred CCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCC-------c-
Q 005713 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSAR-------P- 221 (681)
Q Consensus 150 ~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~-------~- 221 (681)
+...++|||||||.+|...+.++++.+|++|||+|+++|...++.+++..+...++|+++|+||+|+.... +
T Consensus 67 ~~~~l~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~ 146 (590)
T TIGR00491 67 KIPGLLFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFM 146 (590)
T ss_pred ccCcEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHH
Confidence 11248999999999999999999999999999999999999999999999999999999999999986311 0
Q ss_pred -------ccchhhHHH-------HHHHhhccc--------ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhh--
Q 005713 222 -------DYVINSTFE-------LFIELNATD--------EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC-- 277 (681)
Q Consensus 222 -------~~~~~ei~~-------~~~~l~~~~--------~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~-- 277 (681)
..+...+.+ .+.+.+... ...++|++++||++|. |+.+|++.|...
T Consensus 147 e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGe----------GideLl~~l~~l~~ 216 (590)
T TIGR00491 147 ESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGE----------GIPELLTMLAGLAQ 216 (590)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCC----------ChhHHHHHHHHHHH
Confidence 011111111 122222221 1235799999999999 888888877542
Q ss_pred --CC-CCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeecc--------ce
Q 005713 278 --IP-GPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKF--------SR 346 (681)
Q Consensus 278 --lp-~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~--------~~ 346 (681)
++ .-..+.++|+++.|..++.+.+.|.++.|.|++|+|++||.|.+.+.++.. ..+|+.|+...++ +.
T Consensus 217 ~~l~~~l~~~~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~i-~~kVr~l~~~~~l~e~r~~~~~~ 295 (590)
T TIGR00491 217 QYLEEQLKLEEEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDVI-VTRVRALLKPRPLEEMRESRKKF 295 (590)
T ss_pred HHhhhhhccCCCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCcc-cEEEEEecCCCcccccccccccc
Confidence 32 122356789999999999999999999999999999999999999987632 3489999765432 12
Q ss_pred eecceec--CCCEEEEecccccccCCeee
Q 005713 347 VSAEIVA--AGDICAVCGIDDIQIGETIA 373 (681)
Q Consensus 347 ~~v~~a~--aGdiv~i~gl~~~~~Gdtl~ 373 (681)
..++++. +|--+.+.|++++..|+.+.
T Consensus 296 ~~~~~~~~~~~~~v~~~~l~~~~aG~~~~ 324 (590)
T TIGR00491 296 QKVDEVVAAAGVKIAAPGLDDVMAGSPIR 324 (590)
T ss_pred CCcceecCCCceeEEecCCCCCCCCCEEE
Confidence 3455544 44455557888777788774
No 69
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.94 E-value=7.2e-27 Score=236.36 Aligned_cols=184 Identities=26% Similarity=0.317 Sum_probs=148.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccc--e--------e-----eeeeccchhhcccceeEEeeeeEEeeCCeEEE
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQT--V--------K-----ERIMDSNDLERERGITILSKNTSITYNDTKIN 155 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~--~--------~-----~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~ 155 (681)
||+++||+|||||||+++|++..+.+...+. + . .+++|..+.|++||+|++.....+.+++++++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 6999999999999999999999887654331 0 1 24899999999999999999999999999999
Q ss_pred EEeCCCccchhHHHHHHHhhcceEEEEeeCCC-------CCchhhHHHHHHHHHcC-CEEEEEEeecCCCCC-----Ccc
Q 005713 156 IIDTPGHSDFGGEVERILNMVEGVLLVVDSVE-------GPMPQTRFVLKKALEFG-HAVVVVVNKIDRPSA-----RPD 222 (681)
Q Consensus 156 iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~-------g~~~qt~~~l~~~~~~g-ip~ivviNKiD~~~~-----~~~ 222 (681)
|||||||.+|...+..+++.+|++|+|||+.+ +...++.+++..+...+ .|+++|+||+|+..+ +++
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHH
Confidence 99999999999999999999999999999998 56778999998888887 578889999999742 244
Q ss_pred cchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCC---CCCCcchhHHHHHhh
Q 005713 223 YVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDN---LADDLGPLFESIMRC 277 (681)
Q Consensus 223 ~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~---~~~gi~~Ll~~I~~~ 277 (681)
.+.+++...+..++... ..+|++++||++|.|+.++.. +..| ..|+++|...
T Consensus 161 ~i~~~l~~~l~~~~~~~--~~~~ii~iSA~tg~gi~~~~~~~~w~~g-~~l~~~l~~~ 215 (219)
T cd01883 161 EIKKELSPFLKKVGYNP--KDVPFIPISGLTGDNLIEKSENMPWYKG-PTLLEALDSL 215 (219)
T ss_pred HHHHHHHHHHHHcCCCc--CCceEEEeecCcCCCCCcCCCCCCCccC-CcHHHHHhCC
Confidence 55556655555543321 257899999999999887652 3334 5677776544
No 70
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.94 E-value=7.2e-26 Score=227.25 Aligned_cols=187 Identities=26% Similarity=0.316 Sum_probs=148.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCcccccc--c-------------eeeeeeccchhhcccceeEEeeeeEEeeCCeEEE
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQ--T-------------VKERIMDSNDLERERGITILSKNTSITYNDTKIN 155 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~--~-------------~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~ 155 (681)
||+|+||+|+|||||+++|++..+.+.... . ...+++|..+.|++||+|++.....+.|++.+++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999999888765211 0 1267899999999999999999999999999999
Q ss_pred EEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCE-EEEEEeecCCCCCC---cccchhhHHHH
Q 005713 156 IIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSAR---PDYVINSTFEL 231 (681)
Q Consensus 156 iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip-~ivviNKiD~~~~~---~~~~~~ei~~~ 231 (681)
|||||||.+|...+..+++.+|++|+|+|+.++...++..++..+...+.| +|+|+||+|+.... +..+..+++.+
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~ 160 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAF 160 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888888888865 67789999987543 22344555555
Q ss_pred HHHhhcccccCCceEEEeecccCCCCCCCC-CCCCCcchhHHHHHhhCCCC
Q 005713 232 FIELNATDEQCDFQAIYASGIQGKAGLSPD-NLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 232 ~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~-~~~~gi~~Ll~~I~~~lp~p 281 (681)
+..++.. ..+++++||++|.|+.+.. ...|.-.+.|-..++.+++|
T Consensus 161 ~~~~~~~----~~~ii~iSA~~g~ni~~~~~~~~w~~g~~~~~~~~~~~~~ 207 (208)
T cd04166 161 AAKLGIE----DITFIPISALDGDNVVSRSENMPWYSGPTLLEHLETVPIA 207 (208)
T ss_pred HHHcCCC----CceEEEEeCCCCCCCccCCCCCCCCCCCcHHHHHhcCCCC
Confidence 5554432 3579999999999887654 23444445555555666665
No 71
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.92 E-value=1.3e-24 Score=211.85 Aligned_cols=174 Identities=43% Similarity=0.641 Sum_probs=142.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEee-----CCeEEEEEeCCCccc
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY-----NDTKINIIDTPGHSD 164 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-----~~~~i~iiDTPGh~d 164 (681)
|||+++|++++|||||+++|++..+.+.... ....++|..+.|+++|+|+......+.| +++.++|||||||.+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKRE-MKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD 79 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCC-CceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence 7999999999999999999999876554322 2357889999999999999888777755 467899999999999
Q ss_pred hhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCc
Q 005713 165 FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (681)
Q Consensus 165 f~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~ 244 (681)
|...+..+++.+|++|+|+|++++...++...|..+...++|+++|+||+|+.+.+.....+++.+. ++.. ..
T Consensus 80 ~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~---~~~~----~~ 152 (179)
T cd01890 80 FSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDV---LGLD----PS 152 (179)
T ss_pred hHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHH---hCCC----cc
Confidence 9999999999999999999999988888888888777789999999999998654433223333222 2211 12
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
+++++||++|. |+.+|++.+.+.+|+|
T Consensus 153 ~~~~~Sa~~g~----------gi~~l~~~l~~~~~~~ 179 (179)
T cd01890 153 EAILVSAKTGL----------GVEDLLEAIVERIPPP 179 (179)
T ss_pred cEEEeeccCCC----------CHHHHHHHHHhhCCCC
Confidence 48999999999 9999999999999876
No 72
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.92 E-value=1e-24 Score=219.77 Aligned_cols=190 Identities=34% Similarity=0.438 Sum_probs=148.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCcccc---ccceeeeeeccchhhcccceeEEeeeeEEeeC-----CeEEEEEeCCC
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRD---NQTVKERIMDSNDLERERGITILSKNTSITYN-----DTKINIIDTPG 161 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~---~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-----~~~i~iiDTPG 161 (681)
|||+|+||+|+|||||+++|+...+.... ......+++|..+.|+++|+|+......+.+. .+.++||||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 78999999999999999999998876542 22223678999999999999999988888664 37899999999
Q ss_pred ccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCC-----------CcccchhhHHH
Q 005713 162 HSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSA-----------RPDYVINSTFE 230 (681)
Q Consensus 162 h~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~-----------~~~~~~~ei~~ 230 (681)
|.+|...+..++..+|++|+|+|+.++...++..+++.+...++|+++|+||+|+... .+.++++++..
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n~ 160 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNN 160 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888888888888888999999999998521 12233344444
Q ss_pred HHHHhhcccccCCce----EEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 231 LFIELNATDEQCDFQ----AIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 231 ~~~~l~~~~~~~~~p----vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
.+..+....+..-+| +++.||+.||+.. .. ...++.+|++.|++++|+|
T Consensus 161 ~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~-~~-~~~~~~~~~~~~~~~~~~~ 213 (213)
T cd04167 161 IIASFSTTLSFLFSPENGNVCFASSKFGFCFT-LE-SFAKKYGLVDSIVSNIPSP 213 (213)
T ss_pred HHHHhcCCCceEeccCCCeEEEEecCCCeEEe-cH-HHHhhhhHHHHHHhhCCCC
Confidence 444443322111234 8899999999652 22 1245669999999999987
No 73
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.92 E-value=1.2e-24 Score=227.05 Aligned_cols=142 Identities=32% Similarity=0.439 Sum_probs=127.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccce--eeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTV--KERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~--~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
||+++||+|+|||||+++|++..+.+...+.+ ..+++|+.+.|++|++|+......+.|+++.++|||||||.+|..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 68999999999999999999988776554433 2678999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHH
Q 005713 169 VERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELF 232 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~ 232 (681)
+..+++.+|++|+|+|+..+...++..+|+.+...++|.++|+||+|+..++++..++++++.+
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~ 144 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAF 144 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998877666666665543
No 74
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.91 E-value=8e-24 Score=209.58 Aligned_cols=174 Identities=26% Similarity=0.294 Sum_probs=140.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC--------------CeEEE
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--------------DTKIN 155 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--------------~~~i~ 155 (681)
.||+++||+|+|||||+++|+...+ ...+|....|+++|+|+......+.+. ++.++
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~---------~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIAS---------TAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQIT 71 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccc---------hhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEE
Confidence 3799999999999999999987522 235678888999999999888777776 78999
Q ss_pred EEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCC-CcccchhhHHHHHHH
Q 005713 156 IIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSA-RPDYVINSTFELFIE 234 (681)
Q Consensus 156 iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~-~~~~~~~ei~~~~~~ 234 (681)
|||||||.+|.......+..+|++++|+|+.++...++.+.+..+...+.|+++|+||+|+... ..+...+++.+.+..
T Consensus 72 i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~ 151 (192)
T cd01889 72 LVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQK 151 (192)
T ss_pred EEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999888888888999999999999999888887777777778999999999998743 233344455444332
Q ss_pred hhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCc
Q 005713 235 LNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPR 282 (681)
Q Consensus 235 l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 282 (681)
.........+|++++||++|. |+.+|++.+.+.+|+|.
T Consensus 152 ~~~~~~~~~~~vi~iSa~~g~----------gi~~L~~~l~~~~~~~~ 189 (192)
T cd01889 152 TLEKTRFKNSPIIPVSAKPGG----------GEAELGKDLNNLIVLPL 189 (192)
T ss_pred HHHhcCcCCCCEEEEeccCCC----------CHHHHHHHHHhcccccc
Confidence 211111235789999999999 99999999999999884
No 75
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.91 E-value=7.7e-24 Score=211.74 Aligned_cols=166 Identities=27% Similarity=0.292 Sum_probs=134.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC-------------------
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN------------------- 150 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~------------------- 150 (681)
+||+++||+|||||||+++|.. ..+|....|.+||+|+......+.|.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~-------------~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSG-------------VWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDS 67 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhC-------------CCCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccccc
Confidence 4899999999999999999943 22577888999999999888777764
Q ss_pred --------C------eEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCC-CCchhhHHHHHHHHHcCC-EEEEEEeec
Q 005713 151 --------D------TKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVE-GPMPQTRFVLKKALEFGH-AVVVVVNKI 214 (681)
Q Consensus 151 --------~------~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~-g~~~qt~~~l~~~~~~gi-p~ivviNKi 214 (681)
+ ..++|||||||.+|...+..++..+|++|+|+|+.+ +...++.+++..+...++ |+++|+||+
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~ 147 (203)
T cd01888 68 PECECPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKI 147 (203)
T ss_pred ccccccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEch
Confidence 3 789999999999999999999999999999999998 467888889888877776 689999999
Q ss_pred CCCCC-CcccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCc
Q 005713 215 DRPSA-RPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPR 282 (681)
Q Consensus 215 D~~~~-~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 282 (681)
|+... +....++++++.+.... ...++++++||++|. |+..|++.|.+.+|.|.
T Consensus 148 Dl~~~~~~~~~~~~i~~~~~~~~----~~~~~i~~vSA~~g~----------gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 148 DLVKEEQALENYEQIKKFVKGTI----AENAPIIPISAQLKY----------NIDVLLEYIVKKIPTPP 202 (203)
T ss_pred hccCHHHHHHHHHHHHHHHhccc----cCCCcEEEEeCCCCC----------CHHHHHHHHHHhCCCCC
Confidence 98752 22233344444443221 124689999999999 99999999999998874
No 76
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.90 E-value=1.2e-22 Score=240.40 Aligned_cols=247 Identities=21% Similarity=0.217 Sum_probs=189.6
Q ss_pred HHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCe------------------EEEEEeCCCcc
Q 005713 102 KTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDT------------------KINIIDTPGHS 163 (681)
Q Consensus 102 KTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~------------------~i~iiDTPGh~ 163 (681)
||||+++|.+.... .+..+|||.....+.+.++.. .++|||||||.
T Consensus 474 KTtLLD~iR~t~v~----------------~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe 537 (1049)
T PRK14845 474 NTTLLDKIRKTRVA----------------KKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHE 537 (1049)
T ss_pred cccHHHHHhCCCcc----------------cccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcH
Confidence 99999999765332 122459999988888776521 28999999999
Q ss_pred chhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCC-CCCc--------------ccchhhH
Q 005713 164 DFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP-SARP--------------DYVINST 228 (681)
Q Consensus 164 df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~-~~~~--------------~~~~~ei 228 (681)
+|.....+.++.+|++++|+|+.+|+..|+.+++..+...++|+++|+||+|+. +++. +++.+++
T Consensus 538 ~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el 617 (1049)
T PRK14845 538 AFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTEL 617 (1049)
T ss_pred HHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHH
Confidence 999888888899999999999999999999999999999999999999999995 3321 2223333
Q ss_pred HHH-------HHHhhccc--------ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC-----CCccccCCc
Q 005713 229 FEL-------FIELNATD--------EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP-----GPRIEKDGA 288 (681)
Q Consensus 229 ~~~-------~~~l~~~~--------~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp-----~p~~~~~~p 288 (681)
... +.+.+... ...++|++++||++|. |+..|++.|....+ ....+.+.|
T Consensus 618 ~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGe----------GId~Ll~~l~~l~~~~l~~~L~~~~~~~ 687 (1049)
T PRK14845 618 EIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGE----------GIPELLMMVAGLAQKYLEERLKLNVEGY 687 (1049)
T ss_pred HHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCC----------CHHHHHHHHHHhhHHhhhhhhccCCCCc
Confidence 221 22232221 1246799999999999 89999988764332 123346789
Q ss_pred eEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEee--------ccceeecceecCCCEEEE
Q 005713 289 LQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYE--------KFSRVSAEIVAAGDICAV 360 (681)
Q Consensus 289 ~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~--------g~~~~~v~~a~aGdiv~i 360 (681)
+++.|..++.+++.|.++.|.|++|+|++||.|.+++.++.. .+||+.|.... +.+...+++|.|+.-|-|
T Consensus 688 ~~g~VlEv~~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~~i-~~kVRaLl~p~pl~e~r~~~~~~~~~~~~~~a~~vki 766 (1049)
T PRK14845 688 AKGTILEVKEEKGLGTTIDAIIYDGTLRRGDTIVVGGPDDVI-VTKVRALLKPKPLDEIRDPRDKFDPVDEVTAAAGVKI 766 (1049)
T ss_pred eEEEEEEEEEecCceeEEEEEEEcCEEecCCEEEEccCCCcc-eEEEEEecCcccccccccccccccccccccCCCceEE
Confidence 999999999999999999999999999999999999877632 46899987432 113456788888877777
Q ss_pred e--cccccccCCeeecc
Q 005713 361 C--GIDDIQIGETIADK 375 (681)
Q Consensus 361 ~--gl~~~~~Gdtl~~~ 375 (681)
. |++++..||.+...
T Consensus 767 ~a~gl~~~~aG~~~~v~ 783 (1049)
T PRK14845 767 AAPGLEEVLAGSPIRIV 783 (1049)
T ss_pred ecCCccccCCCCeEEEe
Confidence 4 89888889987643
No 77
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.89 E-value=1.9e-22 Score=197.54 Aligned_cols=181 Identities=39% Similarity=0.548 Sum_probs=153.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~ 170 (681)
+|+++|.+|+|||||+++|+..............+.++....+..+|+|+......+.+.+..++||||||+.+|...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 58999999999999999999987776665556667888889999999999988888999999999999999999999999
Q ss_pred HHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCC-CCcccchhhHHHHHHHhhcc-------cccC
Q 005713 171 RILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS-ARPDYVINSTFELFIELNAT-------DEQC 242 (681)
Q Consensus 171 ~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~-~~~~~~~~ei~~~~~~l~~~-------~~~~ 242 (681)
.+++.+|++++|+|+.++...+..+.+..+...++|+++|+||+|+.. .+.....+++.+.+...+.. ....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGL 160 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCC
Confidence 999999999999999999888888888888888999999999999975 34444555555555443320 0123
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
..+++++||++|+ |+..+++.+.+.+|+|
T Consensus 161 ~~~v~~~Sa~~g~----------gi~~l~~~l~~~l~~~ 189 (189)
T cd00881 161 LVPIVPGSALTGI----------GVEELLEAIVEHLPPP 189 (189)
T ss_pred cceEEEEecccCc----------CHHHHHHHHHhhCCCC
Confidence 5789999999999 9999999999999865
No 78
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.88 E-value=2e-22 Score=204.15 Aligned_cols=178 Identities=21% Similarity=0.211 Sum_probs=137.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeee------------------------E
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNT------------------------S 146 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~------------------------~ 146 (681)
+|+++||.++|||||+++|...... .........+|.+..|.++|+|+..... .
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~--~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 78 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELD--NGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEI 78 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcC--CCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCcccccccee
Confidence 4899999999999999999875432 2222234678999999999999754331 2
Q ss_pred EeeCCeEEEEEeCCCccchhHHHHHHHh--hcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCC-Cccc
Q 005713 147 ITYNDTKINIIDTPGHSDFGGEVERILN--MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSA-RPDY 223 (681)
Q Consensus 147 ~~~~~~~i~iiDTPGh~df~~e~~~~l~--~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~-~~~~ 223 (681)
+...++.++|+|||||.+|...+.+++. .+|++++|+|+.+|...++++++..+...++|+++|+||+|+... +...
T Consensus 79 ~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~ 158 (224)
T cd04165 79 CEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQE 158 (224)
T ss_pred eeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHH
Confidence 3344678999999999999999988886 799999999999999999999999999999999999999998643 3455
Q ss_pred chhhHHHHHHHhhcc-------------------cccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 224 VINSTFELFIELNAT-------------------DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 224 ~~~ei~~~~~~l~~~-------------------~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
.++++.+.+...+.. ......|+|++||.+|. |++.|+.. +..+|++
T Consensus 159 ~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~----------Gi~~L~~~-L~~lp~~ 224 (224)
T cd04165 159 TLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGE----------GLDLLHAF-LNLLPLR 224 (224)
T ss_pred HHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCcc----------CHHHHHHH-HHhcCCC
Confidence 566666655432211 11224699999999999 88776655 4567754
No 79
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.86 E-value=1.3e-21 Score=200.56 Aligned_cols=270 Identities=19% Similarity=0.243 Sum_probs=197.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEe--eee-----------------EEeeC
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILS--KNT-----------------SITYN 150 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~--~~~-----------------~~~~~ 150 (681)
.+|+++|.+|+|||||+..|....-...+.... .-+-.++.|.|.|-|-.. ... .++|-
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~AR--qkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTHGELDNGRGAAR--QKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred EEEEEEecccCCcceeEeeeeecccccCccHHH--HHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 469999999999999999987654332211111 112233344444433322 222 22221
Q ss_pred ------CeEEEEEeCCCccchhHHHHHHH--hhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCc-
Q 005713 151 ------DTKINIIDTPGHSDFGGEVERIL--NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARP- 221 (681)
Q Consensus 151 ------~~~i~iiDTPGh~df~~e~~~~l--~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~- 221 (681)
-.-++|||.+||+.|...+...+ .+.|..+|+|-++.|+...|++++.++..+.+|+++|++|+|.+.++.
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPANiL 291 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPANIL 291 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcHHHH
Confidence 12589999999999976654443 467999999999999999999999999999999999999999997752
Q ss_pred ccchhhHHHHHHHhhccc-------------------ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCc
Q 005713 222 DYVINSTFELFIELNATD-------------------EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPR 282 (681)
Q Consensus 222 ~~~~~ei~~~~~~l~~~~-------------------~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 282 (681)
++.+.-+..+++.-++.. ....+|+|.+|..+|. ++ +||...++.++...
T Consensus 292 qEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~----------NL-~LLkmFLNlls~R~ 360 (641)
T KOG0463|consen 292 QETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGT----------NL-PLLKMFLNLLSLRR 360 (641)
T ss_pred HHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCC----------Ch-HHHHHHHhhcCccc
Confidence 333333333333322211 0123799999999998 43 77888888876653
Q ss_pred -cccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCC-CceeeeEEEeEEEeeccceeecceecCCCEEEE
Q 005713 283 -IEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSE-DSCRYARISELFVYEKFSRVSAEIVAAGDICAV 360 (681)
Q Consensus 283 -~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~-~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i 360 (681)
...+.|..++|.++|+.+++|+++.|...+|+|+.+|.+.+.|.. +.+....|++| ..++.+|..+.+|+...+
T Consensus 361 ~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G~F~pI~iKSI----HRKRMpV~~VrcGQtASF 436 (641)
T KOG0463|consen 361 QLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNGDFMPIPIKSI----HRKRMPVGIVRCGQTASF 436 (641)
T ss_pred ccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCCCeeeeehhhh----hhccccceEEeccchhhh
Confidence 355789999999999999999999999999999999999997765 56666788998 678999999999999887
Q ss_pred e--ccc--ccccCCeeeccC
Q 005713 361 C--GID--DIQIGETIADKV 376 (681)
Q Consensus 361 ~--gl~--~~~~Gdtl~~~~ 376 (681)
+ +++ +++.|.++.++.
T Consensus 437 ALKKIkr~~vRKGMVmVsp~ 456 (641)
T KOG0463|consen 437 ALKKIKRKDVRKGMVMVSPK 456 (641)
T ss_pred HhhhcchhhhhcceEEecCC
Confidence 4 443 788899988754
No 80
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.85 E-value=1.4e-20 Score=179.93 Aligned_cols=158 Identities=31% Similarity=0.343 Sum_probs=122.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC-CeEEEEEeCCCccchhHHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN-DTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-~~~i~iiDTPGh~df~~e~ 169 (681)
+|+++|++++|||||+++|++... +....|..+++|+......+.+. +..+++|||||+.+|...+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~-------------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~ 68 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIET-------------DRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNM 68 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCccc-------------ccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHH
Confidence 799999999999999999975321 11233445678887777777776 7899999999999999888
Q ss_pred HHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCC-EEEEEEeecCCCCCC-cccchhhHHHHHHHhhcccccCCceEE
Q 005713 170 ERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGH-AVVVVVNKIDRPSAR-PDYVINSTFELFIELNATDEQCDFQAI 247 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gi-p~ivviNKiD~~~~~-~~~~~~ei~~~~~~l~~~~~~~~~pvi 247 (681)
..+++.+|++++|+|+.++...++...+..+...+. |+++|+||+|+.... .....+++.+.+.... ...++++
T Consensus 69 ~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 144 (164)
T cd04171 69 LAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTF----LADAPIF 144 (164)
T ss_pred HhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcC----cCCCcEE
Confidence 889999999999999999888888888777776776 999999999987532 1223344444443211 1246899
Q ss_pred EeecccCCCCCCCCCCCCCcchhHHHHH
Q 005713 248 YASGIQGKAGLSPDNLADDLGPLFESIM 275 (681)
Q Consensus 248 ~~SA~~G~~~~~~~~~~~gi~~Ll~~I~ 275 (681)
++||++|. |+.++++.+.
T Consensus 145 ~~Sa~~~~----------~v~~l~~~l~ 162 (164)
T cd04171 145 PVSAVTGE----------GIEELKEYLD 162 (164)
T ss_pred EEeCCCCc----------CHHHHHHHHh
Confidence 99999998 8888888775
No 81
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.83 E-value=7e-21 Score=163.20 Aligned_cols=83 Identities=34% Similarity=0.517 Sum_probs=78.4
Q ss_pred ecCcEEEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceee
Q 005713 480 LLEPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGP 559 (681)
Q Consensus 480 llEP~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~ 559 (681)
+||||++++|.||++|+|.|+++|++|||++.+++.. +++++|+|.+|+++++||+++|+++|+|+|+|++.|+||+|
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i~~~~~~--~~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~f~~y~~ 78 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKIEGMEQR--GGAQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYEE 78 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEEECeecc--CCcEEEEEECCHHHHhchHHHHHHhcCCeEEEEEEeCcceE
Confidence 6899999999999999999999999999999999974 35799999999999999999999999999999999999999
Q ss_pred cCCCC
Q 005713 560 WAGDI 564 (681)
Q Consensus 560 ~~g~~ 564 (681)
+++++
T Consensus 79 ~~~~~ 83 (85)
T smart00838 79 VPKSI 83 (85)
T ss_pred CChhh
Confidence 98654
No 82
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.83 E-value=7.2e-21 Score=164.53 Aligned_cols=86 Identities=36% Similarity=0.649 Sum_probs=79.8
Q ss_pred eecCcEEEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeeccee
Q 005713 479 KLLEPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYG 558 (681)
Q Consensus 479 ~llEP~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~ 558 (681)
++||||++++|.+|++|+|+|+++|++|||++.++... +++++.|+|.+|+++++||+++|+++|+|+|.|++.|+||+
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i~~~~~~-~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~~~~y~ 79 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEILSMDPI-GGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSMEFSGYR 79 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EEEEEEEE-STTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEEEEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEEEechhh-hhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEEECeeE
Confidence 58999999999999999999999999999999999987 45799999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q 005713 559 PWAGDIS 565 (681)
Q Consensus 559 ~~~g~~~ 565 (681)
|++++..
T Consensus 80 ~~~~~~~ 86 (89)
T PF00679_consen 80 PVPGDIL 86 (89)
T ss_dssp EESHHHH
T ss_pred ECCCChh
Confidence 9998754
No 83
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.82 E-value=1.6e-19 Score=173.67 Aligned_cols=162 Identities=32% Similarity=0.418 Sum_probs=122.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC---CeEEEEEeCCCccchh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN---DTKINIIDTPGHSDFG 166 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---~~~i~iiDTPGh~df~ 166 (681)
+.|+|+|+.++|||||+++|+....... ...++|.......+.+. +..++||||||+.+|.
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~ 64 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAG----------------EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFT 64 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccc----------------cCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHH
Confidence 3599999999999999999987543211 12255555555555554 7899999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceE
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQA 246 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pv 246 (681)
..+...+..+|++++|+|++++...++...+..+...++|+++|+||+|+...+.+....++...... ........+++
T Consensus 65 ~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 143 (168)
T cd01887 65 NMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQ-GEDEWGGDVQI 143 (168)
T ss_pred HHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhcc-ccccccCcCcE
Confidence 88888999999999999999988888988888888899999999999998755433333333222111 00011224689
Q ss_pred EEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 247 IYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 247 i~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
+++||++|. |+..|++.|.++.
T Consensus 144 ~~~Sa~~~~----------gi~~l~~~l~~~~ 165 (168)
T cd01887 144 VPTSAKTGE----------GIDDLLEAILLLA 165 (168)
T ss_pred EEeecccCC----------CHHHHHHHHHHhh
Confidence 999999999 9999999987653
No 84
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.82 E-value=2.6e-20 Score=156.93 Aligned_cols=78 Identities=27% Similarity=0.486 Sum_probs=74.8
Q ss_pred CcEEEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceeecC
Q 005713 482 EPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWA 561 (681)
Q Consensus 482 EP~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 561 (681)
|||++++|.||++|+|+|+++|++|||++.+++.. ++++.|+|.+|+++++||+++|+++|+|+|+|+++|+||+|++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~--~~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTIVDTDTG--EDEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPVP 78 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEEeceEec--CCeEEEEEEECHHHhhChHHHHHhhCCCcEEEEEEecceEECc
Confidence 89999999999999999999999999999999974 3689999999999999999999999999999999999999985
No 85
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.82 E-value=2.7e-20 Score=156.92 Aligned_cols=78 Identities=27% Similarity=0.387 Sum_probs=75.0
Q ss_pred CcEEEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceeecC
Q 005713 482 EPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWA 561 (681)
Q Consensus 482 EP~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 561 (681)
|||++++|+||++|+|+|+++|++|||+|.+++.. ++++.|+|.+|+++++||+++|+++|+|+|+|++.|+||+|++
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i~~~~~~--~~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~~f~~y~~~~ 78 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATFEDPQIK--GDEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPCH 78 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEeeCcEec--CCEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEEEeCCeEECC
Confidence 89999999999999999999999999999999974 3689999999999999999999999999999999999999985
No 86
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.82 E-value=2.7e-20 Score=157.45 Aligned_cols=78 Identities=29% Similarity=0.487 Sum_probs=73.8
Q ss_pred CcEEEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhh-cchHHHHhhcCcceEEEEeeecceeec
Q 005713 482 EPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGL-LGLRNAILTASRGTAILNTIFDGYGPW 560 (681)
Q Consensus 482 EP~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l-~gy~~~l~s~T~G~g~~~~~f~~Y~~~ 560 (681)
|||++|+|.||++|+|+||++|++|||+|.+++.. ++++++|+|.+|++++ +||+++|+++|+|+|+|++.|+||+|.
T Consensus 1 EPi~~v~i~vP~e~~G~V~~~l~~rrG~i~~~~~~-~~~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~~~ 79 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQKDMEYL-DANRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYRES 79 (80)
T ss_pred CCEEEEEEEeCHHhhHHHHHHHHHhCCEEeccEec-CCCeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccccC
Confidence 89999999999999999999999999999999975 3358999999999999 599999999999999999999999985
No 87
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.81 E-value=5e-20 Score=155.55 Aligned_cols=78 Identities=54% Similarity=0.971 Sum_probs=74.8
Q ss_pred CcEEEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceeec
Q 005713 482 EPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPW 560 (681)
Q Consensus 482 EP~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~ 560 (681)
|||++++|.||++|+|+||++|++|||++.+++.. ++++++|+|.+|+++++||.++|+++|+|+|+|+++|+||+|+
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i~~~~~~-~~~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~f~~y~~~ 78 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEMVDMEPD-GNGRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEPY 78 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEEEccEEC-CCCEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEEecccEec
Confidence 89999999999999999999999999999999985 3468999999999999999999999999999999999999987
No 88
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.81 E-value=6.6e-20 Score=155.31 Aligned_cols=80 Identities=23% Similarity=0.401 Sum_probs=75.2
Q ss_pred CcEEEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceeecC
Q 005713 482 EPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWA 561 (681)
Q Consensus 482 EP~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 561 (681)
|||++++|.||++|+|+|+++|++|||.+.+++..+++++++|+|.+|+++++||.++|+++|+|+|+|+++|+||+|++
T Consensus 1 EPi~~~~I~~p~~~~g~V~~~l~~rrg~i~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~ 80 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHVLSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWEIVP 80 (80)
T ss_pred CCEEEEEEEEcHHHhhHHHHhhhhCeeEEeEEeecCCCccEEEEEEEeHHHHhCcHHHHHhhCCCCcEEEEEeceeEECc
Confidence 89999999999999999999999999999999875333469999999999999999999999999999999999999985
No 89
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.80 E-value=8.7e-20 Score=154.32 Aligned_cols=80 Identities=21% Similarity=0.344 Sum_probs=74.2
Q ss_pred CcEEEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceeecC
Q 005713 482 EPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWA 561 (681)
Q Consensus 482 EP~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 561 (681)
|||+.|+|.||++++|+|+++|++|||+|++++..+++...+|++++|+++++||.++||++|+|+|.|++.|+||++++
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~v~ 80 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHVIYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQIVP 80 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEEeeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEEeCeeeECc
Confidence 89999999999999999999999999999998875322228999999999999999999999999999999999999984
No 90
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=2.3e-19 Score=197.18 Aligned_cols=217 Identities=25% Similarity=0.264 Sum_probs=162.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC----------------
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND---------------- 151 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~---------------- 151 (681)
+.+-+||+||+|+|||-|++.+-........ ..|||.....+.|...+
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqege----------------aggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~ 537 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGE----------------AGGITQQIGATYFPAENIREKTKELKKDAKKRL 537 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhcccccccc----------------ccceeeeccccccchHHHHHHHHHHHhhhhhhc
Confidence 4566899999999999999998654222111 12666665555554321
Q ss_pred --eEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCC-CCC--c-----
Q 005713 152 --TKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP-SAR--P----- 221 (681)
Q Consensus 152 --~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~-~~~--~----- 221 (681)
--+.+||||||+.|.....+..+.||.+|||||..+|+.+||.+-+++++..+.|+||++||+|+. ++. +
T Consensus 538 kvPg~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~ 617 (1064)
T KOG1144|consen 538 KVPGLLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIV 617 (1064)
T ss_pred CCCeeEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHH
Confidence 247899999999999999999999999999999999999999999999999999999999999986 211 1
Q ss_pred -------ccchhhHHHHHH-------Hhhcccc--------cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 222 -------DYVINSTFELFI-------ELNATDE--------QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 222 -------~~~~~ei~~~~~-------~l~~~~~--------~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
..++++.+..+. +.+.+.. .--+.++++||.+|. |+..|+-.|+++..
T Consensus 618 ~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGe----------GipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 618 EALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGE----------GIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCC----------CcHHHHHHHHHHHH
Confidence 112222222222 1111110 113678999999999 88999888887654
Q ss_pred CCcc---ccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCce
Q 005713 280 GPRI---EKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSC 330 (681)
Q Consensus 280 ~p~~---~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~ 330 (681)
.... ..-..+.+.|..+...++.|+-+-.-+..|.|+.||.|.+++.++.+
T Consensus 688 k~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~GpI 741 (1064)
T KOG1144|consen 688 KTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQGPI 741 (1064)
T ss_pred HHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCCch
Confidence 3321 22356788899999999999888888899999999999999988764
No 91
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.79 E-value=7e-19 Score=169.29 Aligned_cols=161 Identities=17% Similarity=0.266 Sum_probs=111.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~ 170 (681)
||+++|+.|+|||||+++|........... . .+...|+......+.+++..+++|||||+.+|...+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~--------~----~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLP--------P----SKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCc--------c----cccCCccccceEEEEECCEEEEEEECCCChhhHHHHH
Confidence 689999999999999999987533200000 0 0112344444456777889999999999999999999
Q ss_pred HHHhhcceEEEEeeCCCCC-chhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCce
Q 005713 171 RILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (681)
Q Consensus 171 ~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~p 245 (681)
.+++.+|++++|+|+.+.. ......++..+.+ .++|+++++||+|+.... ..+++.+.+...........++
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL---SVEEIKEVFQDKAEEIGRRDCL 145 (167)
T ss_pred HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC---CHHHHHHHhccccccccCCceE
Confidence 9999999999999987642 2223334443332 479999999999986532 2233444443322222223578
Q ss_pred EEEeecccCCCCCCCCCCCCCcchhHHHHHh
Q 005713 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (681)
Q Consensus 246 vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~ 276 (681)
++++||++|. |+.+++++|.+
T Consensus 146 ~~~~Sa~~g~----------gv~e~~~~l~~ 166 (167)
T cd04160 146 VLPVSALEGT----------GVREGIEWLVE 166 (167)
T ss_pred EEEeeCCCCc----------CHHHHHHHHhc
Confidence 9999999999 89999988864
No 92
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.5e-18 Score=164.93 Aligned_cols=165 Identities=21% Similarity=0.278 Sum_probs=137.6
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
.+..+|+++|..++|||||+.+++++.+......++ |+.+.++.+.+....+++++|||+|+++|.
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATI--------------GiDFlskt~~l~d~~vrLQlWDTAGQERFr 85 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATI--------------GIDFLSKTMYLEDRTVRLQLWDTAGQERFR 85 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhccccccee--------------eeEEEEEEEEEcCcEEEEEEEecccHHHHh
Confidence 345899999999999999999999999987777776 899999999888888999999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCC-CCchhhHHHHHHHHHcC----CEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 167 GEVERILNMVEGVLLVVDSVE-GPMPQTRFVLKKALEFG----HAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~-g~~~qt~~~l~~~~~~g----ip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
.....+++.++.+|+|+|.++ ..+.+|..|+.-++..+ +-+++|+||.|+.+.+ +...++-...-+++++
T Consensus 86 slipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkr-qvs~eEg~~kAkel~a---- 160 (221)
T KOG0094|consen 86 SLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKR-QVSIEEGERKAKELNA---- 160 (221)
T ss_pred hhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchh-hhhHHHHHHHHHHhCc----
Confidence 999999999999999999776 67788999998887653 4578899999998764 2233333333344443
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCcc
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI 283 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~ 283 (681)
-++.+||+.|. |+.+||..|...+|.+..
T Consensus 161 ---~f~etsak~g~----------NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 161 ---EFIETSAKAGE----------NVKQLFRRIAAALPGMEV 189 (221)
T ss_pred ---EEEEecccCCC----------CHHHHHHHHHHhccCccc
Confidence 48999999999 899999999998887743
No 93
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=2e-18 Score=166.08 Aligned_cols=157 Identities=15% Similarity=0.204 Sum_probs=109.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCccch
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDF 165 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df 165 (681)
..++|+++|+.|+|||||+++|+..........+ .|+.... ..+.+++ ..++||||||+.+|
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t--------------~~~~~~~--~~~~~~~~~~~l~i~D~~G~~~~ 65 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNT--------------IGVDFTM--KTLEIEGKRVKLQIWDTAGQERF 65 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCc--------------cceEEEE--EEEEECCEEEEEEEEECCChHHH
Confidence 4589999999999999999999865432211111 1333322 3344444 68899999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCchhh-HHHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPMPQT-RFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~~qt-~~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
...+...++.+|++|+|+|+++....+. ..++..+.. .++|+++|+||+|+...+ +...++...+.....
T Consensus 66 ~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~----- 139 (165)
T cd01864 66 RTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQR-EVLFEEACTLAEKNG----- 139 (165)
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc-ccCHHHHHHHHHHcC-----
Confidence 9999999999999999999987543332 334444433 368999999999987543 122233333333222
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
..+++++||++|. |+.++++.+.+.
T Consensus 140 -~~~~~e~Sa~~~~----------~v~~~~~~l~~~ 164 (165)
T cd01864 140 -MLAVLETSAKESQ----------NVEEAFLLMATE 164 (165)
T ss_pred -CcEEEEEECCCCC----------CHHHHHHHHHHh
Confidence 1358999999998 899999998765
No 94
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.79 E-value=2e-19 Score=151.68 Aligned_cols=78 Identities=28% Similarity=0.472 Sum_probs=74.7
Q ss_pred CcEEEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceeecC
Q 005713 482 EPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWA 561 (681)
Q Consensus 482 EP~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 561 (681)
|||++++|.||++|+|+|+++|++|||++.+++.. ++++.|+|.+|+++++||.++|+++|+|+|+++++|+||++++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i~~~~~~--~~~~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~~f~~y~~~~ 78 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQILGTESR--GGWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEVP 78 (78)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHHcCCceEceecc--CCcEEEEEEcCHHHHhChHHHHHhhcCCeEEEEEEecceeECc
Confidence 89999999999999999999999999999999974 3589999999999999999999999999999999999999984
No 95
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=2.6e-18 Score=176.54 Aligned_cols=283 Identities=18% Similarity=0.227 Sum_probs=208.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC-------------------
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN------------------- 150 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~------------------- 150 (681)
.+|+++|..|+|||||+..|....-........ --+-.+..|...|-|-....-.+.++
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrAR--ln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRAR--LNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCeee--eehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 469999999999999999987654332211111 11223444555554433332222221
Q ss_pred --CeEEEEEeCCCccchhHHHHHHHhh--cceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCC-Ccccch
Q 005713 151 --DTKINIIDTPGHSDFGGEVERILNM--VEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSA-RPDYVI 225 (681)
Q Consensus 151 --~~~i~iiDTPGh~df~~e~~~~l~~--aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~-~~~~~~ 225 (681)
..-++|||.+||..|...+...+.. .|+++|||+|..|+.-.|++|+..+..+++|++|+++|+|+... -.+.++
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~~~~~~tv 325 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDRQGLKKTV 325 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeeccccchhHHHHH
Confidence 1258999999999998777776664 68999999999999999999999999999999999999999753 356777
Q ss_pred hhHHHHHHHhhccccc-------------------CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccc--
Q 005713 226 NSTFELFIELNATDEQ-------------------CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIE-- 284 (681)
Q Consensus 226 ~ei~~~~~~l~~~~~~-------------------~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~-- 284 (681)
.++..++...++..-. -..|+|.+|..+|. ++ .|+..++..+++-...
T Consensus 326 ~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGe----------gl-~ll~~fLn~Lsp~~~~~e 394 (591)
T KOG1143|consen 326 KDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGE----------GL-RLLRTFLNCLSPAGTAEE 394 (591)
T ss_pred HHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCcc----------ch-hHHHHHHhhcCCcCChHH
Confidence 7877777665543211 13799999999998 54 5667777777665322
Q ss_pred ----cCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCC-CceeeeEEEeEEEeeccceeecceecCCCEEE
Q 005713 285 ----KDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSE-DSCRYARISELFVYEKFSRVSAEIVAAGDICA 359 (681)
Q Consensus 285 ----~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~-~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~ 359 (681)
...|..++|..++..+.+|.++-|.+.+|.++.|+.+.+.|.+ +.+.+.+|.+| ..++.++.-+.||+-..
T Consensus 395 ~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG~F~~itV~sI----~Rnr~acrvvraGqaAs 470 (591)
T KOG1143|consen 395 RIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDGTFEKITVGSI----RRNRQACRVVRAGQAAS 470 (591)
T ss_pred HHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCCceeEEEeeee----eccccceeeecCcccee
Confidence 2357788999999999999999999999999999999998876 56666789999 46778888899999888
Q ss_pred Eec-cc---ccccCCeeeccCCCCCCCCCccCCCeeeEEEeecC
Q 005713 360 VCG-ID---DIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINT 399 (681)
Q Consensus 360 i~g-l~---~~~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~ 399 (681)
++- .. .++.|.++..... .|.+...|.++-
T Consensus 471 lsl~d~D~~~LR~GMVl~~~~~----------nP~~c~~F~A~~ 504 (591)
T KOG1143|consen 471 LSLNDPDGVSLRRGMVLAEIDH----------NPPVCYEFTANL 504 (591)
T ss_pred eeccCCCccchhcceEEeecCC----------CCceEEEEeeee
Confidence 852 11 3677888876543 355667776654
No 96
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.78 E-value=6.5e-18 Score=181.05 Aligned_cols=153 Identities=24% Similarity=0.324 Sum_probs=128.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh---
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG--- 166 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~--- 166 (681)
+.|+|+|.+|+|||||+|+|+++.-++..... |+|.+......+|.+..+.+|||+|..+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~p---------------GvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~ 68 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTP---------------GVTRDRIYGDAEWLGREFILIDTGGLDDGDEDE 68 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCC---------------CCccCCccceeEEcCceEEEEECCCCCcCCchH
Confidence 67999999999999999999987655443322 999999999999999999999999986432
Q ss_pred ------HHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 167 ------GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 167 ------~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
..++.++..||.+|+|||+.+|+.+++..+.+.++..++|+|+|+||+|.... ++....|-.++..+
T Consensus 69 l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~------e~~~~efyslG~g~- 141 (444)
T COG1160 69 LQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKA------EELAYEFYSLGFGE- 141 (444)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchh------hhhHHHHHhcCCCC-
Confidence 34466788999999999999999999999999999888999999999996522 12222344566543
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
++++||.+|. |+..|+|++++.+|
T Consensus 142 -----~~~ISA~Hg~----------Gi~dLld~v~~~l~ 165 (444)
T COG1160 142 -----PVPISAEHGR----------GIGDLLDAVLELLP 165 (444)
T ss_pred -----ceEeehhhcc----------CHHHHHHHHHhhcC
Confidence 8999999999 99999999999997
No 97
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.78 E-value=3e-18 Score=162.42 Aligned_cols=149 Identities=23% Similarity=0.327 Sum_probs=113.5
Q ss_pred EEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH-----
Q 005713 93 AIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG----- 167 (681)
Q Consensus 93 ~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~----- 167 (681)
+++|++|+|||||+++|+........ ...++|.......+.+.++.+.+|||||+.++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 65 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVE---------------DTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKE 65 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeec---------------CCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHH
Confidence 58999999999999999875322111 1125566666667778889999999999988543
Q ss_pred ---HHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCc
Q 005713 168 ---EVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (681)
Q Consensus 168 ---e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~ 244 (681)
.+...++.+|++++|+|+.++.......+++.+...+.|+++|+||+|+...+.. ...+..++. .
T Consensus 66 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~------~~~~~~~~~------~ 133 (157)
T cd01894 66 IREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE------AAEFYSLGF------G 133 (157)
T ss_pred HHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH------HHHHHhcCC------C
Confidence 4556788999999999999887777778888888889999999999998764321 122222221 1
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
+++++||++|. |+..+++.+.+++
T Consensus 134 ~~~~~Sa~~~~----------gv~~l~~~l~~~~ 157 (157)
T cd01894 134 EPIPISAEHGR----------GIGDLLDAILELL 157 (157)
T ss_pred CeEEEecccCC----------CHHHHHHHHHhhC
Confidence 58999999998 9999999988753
No 98
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.77 E-value=5e-18 Score=163.07 Aligned_cols=155 Identities=20% Similarity=0.291 Sum_probs=111.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|+.++|||||+++|+...+......+. +.++......+......++||||||+..|...+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 66 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTY--------------ALTLYKHNAKFEGKTILVDFWDTAGQERFQTMH 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCce--------------eeEEEEEEEEECCEEEEEEEEeCCCchhhhhhh
Confidence 379999999999999999998765432221111 334444444455556789999999999999999
Q ss_pred HHHHhhcceEEEEeeCCCCCchhh-HHHHHHHHHc--CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceE
Q 005713 170 ERILNMVEGVLLVVDSVEGPMPQT-RFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQA 246 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~qt-~~~l~~~~~~--gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pv 246 (681)
..+++.+|++|+|+|+++....+. ..++..+.+. ++|+++|+||+|+... ...+..... +...+|+
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~-------~~~~~~~ 135 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS----VTQKKFNFA-------EKHNLPL 135 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh----HHHHHHHHH-------HHcCCeE
Confidence 999999999999999987544333 3445555444 6899999999998432 112222211 1124689
Q ss_pred EEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 247 IYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 247 i~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
+++||++|. |+..+++.+.+.+.
T Consensus 136 ~~~Sa~~~~----------gv~~l~~~l~~~~~ 158 (161)
T cd04124 136 YYVSAADGT----------NVVKLFQDAIKLAV 158 (161)
T ss_pred EEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 999999999 99999999987654
No 99
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=4.6e-19 Score=177.94 Aligned_cols=251 Identities=24% Similarity=0.306 Sum_probs=185.2
Q ss_pred hccCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEee---C---------
Q 005713 83 LMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY---N--------- 150 (681)
Q Consensus 83 ~~~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~---~--------- 150 (681)
...+.-..||+-+||+.|||||++.++.+-. ++ ..+.|-||.|||...+..... .
T Consensus 32 visRQATiNIGTIGHVAHGKSTvVkAiSGv~-------Tv------rFK~ELERNITIKLGYANAKIYkc~~~kCprP~c 98 (466)
T KOG0466|consen 32 VISRQATINIGTIGHVAHGKSTVVKAISGVH-------TV------RFKNELERNITIKLGYANAKIYKCDDPKCPRPGC 98 (466)
T ss_pred HhhheeeeeecceeccccCcceeeeeeccce-------EE------EehhhhhcceeEEeccccceEEecCCCCCCCcch
Confidence 3445567999999999999999999885421 11 224566778888765443221 0
Q ss_pred -----------------C--------eEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCC-CCchhhHHHHHHHHHcC
Q 005713 151 -----------------D--------TKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVE-GPMPQTRFVLKKALEFG 204 (681)
Q Consensus 151 -----------------~--------~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~-g~~~qt~~~l~~~~~~g 204 (681)
+ ..+.|+|||||.-....+.......|+++|++.+++ -+++||-+|+....-+.
T Consensus 99 y~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~ 178 (466)
T KOG0466|consen 99 YRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK 178 (466)
T ss_pred hhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh
Confidence 0 157899999999998888888889999999999987 58999999999888777
Q ss_pred C-EEEEEEeecCCCCCC-cccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCc
Q 005713 205 H-AVVVVVNKIDRPSAR-PDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPR 282 (681)
Q Consensus 205 i-p~ivviNKiD~~~~~-~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 282 (681)
+ .++++-||+|+...+ ..+-.+++..+...-.+ -..|++++||.-.+ +++.+++.|++.+|-|.
T Consensus 179 LkhiiilQNKiDli~e~~A~eq~e~I~kFi~~t~a----e~aPiiPisAQlky----------NId~v~eyivkkIPvPv 244 (466)
T KOG0466|consen 179 LKHIIILQNKIDLIKESQALEQHEQIQKFIQGTVA----EGAPIIPISAQLKY----------NIDVVCEYIVKKIPVPV 244 (466)
T ss_pred hceEEEEechhhhhhHHHHHHHHHHHHHHHhcccc----CCCceeeehhhhcc----------ChHHHHHHHHhcCCCCc
Confidence 5 477888999997532 12233344444332222 24699999999888 89999999999999999
Q ss_pred cccCCceEEEEEEeee--------cCCCceEEEEEeecccccCCCEEEEccCC------Ccee----eeEEEeEEEeecc
Q 005713 283 IEKDGALQMLATNLEY--------DEHKGRIAIGRLHAGVLRKGMEVRVCTSE------DSCR----YARISELFVYEKF 344 (681)
Q Consensus 283 ~~~~~p~~~~V~~~~~--------d~~~G~v~~grV~sG~lk~gd~v~~~~~~------~~~~----~~kV~~i~~~~g~ 344 (681)
.|-..|.++.|...+. ++..|-++-|.+..|.|+.||.+.+.|.= +... ..+|.++| .
T Consensus 245 Rdf~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~----A 320 (466)
T KOG0466|consen 245 RDFTSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLF----A 320 (466)
T ss_pred cccCCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHH----h
Confidence 9888888888877653 34567899999999999999999886542 1210 02344443 3
Q ss_pred ceeecceecCCCEEEE-eccc
Q 005713 345 SRVSAEIVAAGDICAV-CGID 364 (681)
Q Consensus 345 ~~~~v~~a~aGdiv~i-~gl~ 364 (681)
++.+++.|.+|-.+++ +.++
T Consensus 321 E~n~L~~AvPGGLIGVGT~~D 341 (466)
T KOG0466|consen 321 EQNDLQFAVPGGLIGVGTKMD 341 (466)
T ss_pred hhccceeecCCceeeeccccC
Confidence 5667889999999998 4443
No 100
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.77 E-value=8.9e-19 Score=148.04 Aligned_cols=79 Identities=29% Similarity=0.551 Sum_probs=75.3
Q ss_pred CcEEEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceeecC
Q 005713 482 EPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWA 561 (681)
Q Consensus 482 EP~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~ 561 (681)
|||++++|.||++|+|+|+++|++|||++.+++.. ++++..|+|.+|+++++||+++|++.|+|+|+|++.|+||++++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~v~~~~~~-~~~~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~~f~~y~~~~ 79 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEILGMEPR-GTGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEPVP 79 (79)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHhcCCeeEeeEec-CCCeEEEEEECCHHHHcCcHHHhhhhcCCeEEEEEEecceEeCc
Confidence 89999999999999999999999999999999985 33689999999999999999999999999999999999999974
No 101
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.76 E-value=3.5e-18 Score=190.19 Aligned_cols=162 Identities=27% Similarity=0.283 Sum_probs=121.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
...+|+++|++++|||||+++|++....... ...|+|.+.....+.+++..+.||||||+.++..
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~---------------~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~ 235 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVS---------------DIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGK 235 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecC---------------CCCCceECcEeEEEEECCcEEEEEECCCcccccc
Confidence 4578999999999999999999976432211 1237788777778888889999999999865432
Q ss_pred -----------HHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhh
Q 005713 168 -----------EVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN 236 (681)
Q Consensus 168 -----------e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~ 236 (681)
....+++.+|++|+|+|+.++...++..++..+.+.++|+++|+||+|+.. + .+..+++.+.+....
T Consensus 236 ~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~-~-~~~~~~~~~~~~~~~ 313 (429)
T TIGR03594 236 VTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVK-D-EKTREEFKKELRRKL 313 (429)
T ss_pred chhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCC-C-HHHHHHHHHHHHHhc
Confidence 224568899999999999999999999999999999999999999999872 1 122223332222111
Q ss_pred cccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 237 ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 237 ~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
. ....+|++++||++|+ |+..+++.+.+..
T Consensus 314 ~--~~~~~~vi~~SA~~g~----------~v~~l~~~i~~~~ 343 (429)
T TIGR03594 314 P--FLDFAPIVFISALTGQ----------GVDKLLDAIDEVY 343 (429)
T ss_pred c--cCCCCceEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 1 1123689999999999 7888888776543
No 102
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.76 E-value=9.8e-18 Score=160.42 Aligned_cols=156 Identities=21% Similarity=0.226 Sum_probs=111.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.||+++|+.++|||||+++|+..........+. |.........+......++||||||+.+|....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~ 66 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTI--------------GVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVT 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce--------------eeeEEEEEEEECCEEEEEEEEECcchHHHHHhH
Confidence 379999999999999999999765443222221 333333334444444788999999999999999
Q ss_pred HHHHhhcceEEEEeeCCCCCchhhH-HHHHHHH---HcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCce
Q 005713 170 ERILNMVEGVLLVVDSVEGPMPQTR-FVLKKAL---EFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~qt~-~~l~~~~---~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~p 245 (681)
...++.+|++|+|+|+++....+.. .++.... ..++|+++|+||+|+...+ ....+++..+.... .++
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~-------~~~ 138 (161)
T cd04113 67 RSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQR-EVTFLEASRFAQEN-------GLL 138 (161)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhc-cCCHHHHHHHHHHc-------CCE
Confidence 9999999999999999885443332 3333333 2478999999999986532 11233333433332 257
Q ss_pred EEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 246 vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
++++||++|. |+.++|+.+.+.
T Consensus 139 ~~~~Sa~~~~----------~i~~~~~~~~~~ 160 (161)
T cd04113 139 FLETSALTGE----------NVEEAFLKCARS 160 (161)
T ss_pred EEEEECCCCC----------CHHHHHHHHHHh
Confidence 9999999999 999999998764
No 103
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.76 E-value=1.1e-17 Score=160.12 Aligned_cols=157 Identities=20% Similarity=0.219 Sum_probs=107.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
..+|+++|.+++|||||++++++..+......+. +.. ......+......+++|||||+.+|...
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~--------------~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 66 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTI--------------EDS-YTKQCEIDGQWAILDILDTAGQEEFSAM 66 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCc--------------cce-EEEEEEECCEEEEEEEEECCCCcchhHH
Confidence 3689999999999999999999865432222221 111 1112223333467899999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCCchh-hHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 169 VERILNMVEGVLLVVDSVEGPMPQ-TRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~~~q-t~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
+..+++.+|++++|+|+++....+ ...++..+.. .++|+++|+||+|+..... ....+....... ..
T Consensus 67 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~-~~~~~~~~~~~~-------~~ 138 (164)
T cd04145 67 REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRK-VSREEGQELARK-------LK 138 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccce-ecHHHHHHHHHH-------cC
Confidence 999999999999999998743221 2223333322 3689999999999875431 112223332222 23
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
++++++||++|. |+.++|+.+++.+
T Consensus 139 ~~~~~~Sa~~~~----------~i~~l~~~l~~~~ 163 (164)
T cd04145 139 IPYIETSAKDRL----------NVDKAFHDLVRVI 163 (164)
T ss_pred CcEEEeeCCCCC----------CHHHHHHHHHHhh
Confidence 579999999999 9999999998764
No 104
>PRK15494 era GTPase Era; Provisional
Probab=99.76 E-value=1.1e-17 Score=179.90 Aligned_cols=160 Identities=24% Similarity=0.240 Sum_probs=117.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh-
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG- 166 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~- 166 (681)
+..+|+++|++|+|||||+++|++.......+ ..+.|.......+.+++.+++||||||+.+..
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~---------------k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~ 115 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTP---------------KVQTTRSIITGIITLKDTQVILYDTPGIFEPKG 115 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccC---------------CCCCccCcEEEEEEeCCeEEEEEECCCcCCCcc
Confidence 45789999999999999999999765432111 11344444445567788999999999985421
Q ss_pred -------HHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccc
Q 005713 167 -------GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (681)
Q Consensus 167 -------~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~ 239 (681)
.....++..+|++|+|+|+.++....+..++..+...+.|+|+|+||+|+.... ..++.+.+....
T Consensus 116 ~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~----~~~~~~~l~~~~--- 188 (339)
T PRK15494 116 SLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKY----LNDIKAFLTENH--- 188 (339)
T ss_pred cHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcccc----HHHHHHHHHhcC---
Confidence 222345788999999999998877777777888888888999999999986432 334444433221
Q ss_pred ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 240 ~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
...+++++||++|. |+..|++.|.+++|..
T Consensus 189 --~~~~i~~iSAktg~----------gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 189 --PDSLLFPISALSGK----------NIDGLLEYITSKAKIS 218 (339)
T ss_pred --CCcEEEEEeccCcc----------CHHHHHHHHHHhCCCC
Confidence 12469999999999 9999999999988753
No 105
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.76 E-value=1.6e-17 Score=159.00 Aligned_cols=158 Identities=19% Similarity=0.241 Sum_probs=113.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|++++|||||+++|++.........+ .|.+.......+...+..+.||||||+..|....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t--------------~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~ 67 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQEST--------------IGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLA 67 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc--------------cceeEEEEEEEECCEEEEEEEEeCCchHHHHHHH
Confidence 47999999999999999999986543211111 1444444555555556789999999999998888
Q ss_pred HHHHhhcceEEEEeeCCCCC-chhhHHHHHHHHHc---CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCce
Q 005713 170 ERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~~---gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~p 245 (681)
...++.+|++|+|+|+++.. ..+...++..+... ++|+++++||+|+.... ....++...+.... .++
T Consensus 68 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~-~~~~~~~~~~~~~~-------~~~ 139 (163)
T cd01860 68 PMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKR-QVSTEEAQEYADEN-------GLL 139 (163)
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccC-cCCHHHHHHHHHHc-------CCE
Confidence 88999999999999988642 23344455555444 47899999999987432 11222333333222 257
Q ss_pred EEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 246 vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
++++||++|. |+..+++.+.+.+|
T Consensus 140 ~~~~Sa~~~~----------~v~~l~~~l~~~l~ 163 (163)
T cd01860 140 FFETSAKTGE----------NVNELFTEIAKKLP 163 (163)
T ss_pred EEEEECCCCC----------CHHHHHHHHHHHhC
Confidence 9999999998 99999999998764
No 106
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=5.6e-18 Score=161.71 Aligned_cols=161 Identities=16% Similarity=0.195 Sum_probs=122.2
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
.+..++|.++|.+|+|||.|+.++....+......++ |+.+......+..+..+++||||+|+++|
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTI--------------GVDf~~rt~e~~gk~iKlQIWDTAGQERF 71 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTI--------------GVDFKIRTVELDGKTIKLQIWDTAGQERF 71 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhccee--------------eeEEEEEEeeecceEEEEEeeeccccHHH
Confidence 4567899999999999999999998877765555554 77777777777778889999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCC-chhhHHHHHHHHHc---CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~~---gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
...+.++++.|+++|+|+|.++-- +.....|+..+.++ ++|.++|+||+|+.+++.- ..++.+++. +.
T Consensus 72 rtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v-~~~~a~~fa-------~~ 143 (205)
T KOG0084|consen 72 RTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVV-STEEAQEFA-------DE 143 (205)
T ss_pred hhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheec-CHHHHHHHH-------Hh
Confidence 999999999999999999988732 23333455555554 5799999999999876421 112222222 12
Q ss_pred CCce-EEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 242 CDFQ-AIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 242 ~~~p-vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.+.| ++++||+.+. +++..|..+...+
T Consensus 144 ~~~~~f~ETSAK~~~----------NVe~~F~~la~~l 171 (205)
T KOG0084|consen 144 LGIPIFLETSAKDST----------NVEDAFLTLAKEL 171 (205)
T ss_pred cCCcceeecccCCcc----------CHHHHHHHHHHHH
Confidence 3456 9999999998 7787777776544
No 107
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.76 E-value=1.3e-17 Score=160.60 Aligned_cols=158 Identities=20% Similarity=0.176 Sum_probs=110.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|..++|||||+++|+...+......+. |+++.............+.||||||+.+|...+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~ 67 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV--------------GIDFKVKTVFRNDKRVKLQIWDTAGQERYRTIT 67 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce--------------eeEEEEEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 589999999999999999998765432222221 333333333233334689999999999999999
Q ss_pred HHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHHc---CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCce
Q 005713 170 ERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~~---gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~p 245 (681)
..+++.+|++|+|+|.++... .+...++..+... +.|+++|+||+|+.+.+.. ..++..++... ..++
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~-------~~~~ 139 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVV-SSERGRQLADQ-------LGFE 139 (165)
T ss_pred HHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCccccc-CHHHHHHHHHH-------cCCE
Confidence 999999999999999876322 2333444444442 5789999999998654321 12222222221 2457
Q ss_pred EEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 246 vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
++++||++|. |+.++|+.+.+.++
T Consensus 140 ~~~~Sa~~~~----------gv~~l~~~l~~~~~ 163 (165)
T cd01865 140 FFEASAKENI----------NVKQVFERLVDIIC 163 (165)
T ss_pred EEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 9999999999 99999999987654
No 108
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.75 E-value=1.5e-17 Score=173.67 Aligned_cols=156 Identities=26% Similarity=0.260 Sum_probs=109.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch-----
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF----- 165 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df----- 165 (681)
.|+++|.+|+|||||+|+|++.......... ++|...........+.++.||||||+.+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~---------------~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~ 66 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKA---------------QTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLN 66 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCC---------------CcccCcEEEEEEcCCcEEEEEECcCCCCCcchHH
Confidence 5899999999999999999986543221111 23333222233445678999999997542
Q ss_pred ---hHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 166 ---GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 166 ---~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
...+..++..+|++++|+|+++..... ..++..+...+.|+++|+||+|+.. .+...+.+.++... .
T Consensus 67 ~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~--~~~~~~~~~~~~~~-------~ 136 (270)
T TIGR00436 67 RLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKF--KDKLLPLIDKYAIL-------E 136 (270)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCC--HHHHHHHHHHHHhh-------c
Confidence 223456788999999999999865544 5667777778999999999999863 22222222222111 1
Q ss_pred Cc-eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 243 DF-QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 243 ~~-pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
.+ +++++||++|. |++.|++.+.+++|+.
T Consensus 137 ~~~~v~~iSA~~g~----------gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 137 DFKDIVPISALTGD----------NTSFLAAFIEVHLPEG 166 (270)
T ss_pred CCCceEEEecCCCC----------CHHHHHHHHHHhCCCC
Confidence 12 69999999999 9999999999998754
No 109
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=5.2e-18 Score=161.33 Aligned_cols=164 Identities=17% Similarity=0.221 Sum_probs=127.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
...+|+++|..++|||||+-++....+......++ |..+..+...+.-..+++.||||+|+++|.+
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TI--------------GaaF~tktv~~~~~~ikfeIWDTAGQERy~s 69 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTI--------------GAAFLTKTVTVDDNTIKFEIWDTAGQERYHS 69 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCcccccccccc--------------ccEEEEEEEEeCCcEEEEEEEEcCCcccccc
Confidence 35789999999999999999999887765444444 6666666666666678999999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCC-CchhhHHHHHHHHHcC---CEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 168 EVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEFG---HAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g-~~~qt~~~l~~~~~~g---ip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
....+++.|+++|+|+|.++- .+.+.+.|++.+.+.. +-+.+|+||+|+.+.+ +...++..+...+ ..
T Consensus 70 lapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R-~V~~~ea~~yAe~-------~g 141 (200)
T KOG0092|consen 70 LAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERR-EVEFEEAQAYAES-------QG 141 (200)
T ss_pred cccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcc-cccHHHHHHHHHh-------cC
Confidence 999999999999999998873 4455666777776654 3366799999998643 2223334333322 34
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCcc
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI 283 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~ 283 (681)
.+++.+||++|. |+..+|..|.+.+|....
T Consensus 142 ll~~ETSAKTg~----------Nv~~if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 142 LLFFETSAKTGE----------NVNEIFQAIAEKLPCSDP 171 (200)
T ss_pred CEEEEEeccccc----------CHHHHHHHHHHhccCccc
Confidence 579999999999 999999999999987643
No 110
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.75 E-value=2e-17 Score=158.24 Aligned_cols=155 Identities=16% Similarity=0.196 Sum_probs=106.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEe--eCCeEEEEEeCCCccchhHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT--YNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~--~~~~~i~iiDTPGh~df~~e 168 (681)
+|+++|..++|||||+++|+...+......+. |..+......+. .....++||||||+.+|...
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 67 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTI--------------GVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAI 67 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCcE--------------EEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHh
Confidence 79999999999999999998765432221111 222222222233 33578999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCCchhhH-HHHHHHHH--cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCce
Q 005713 169 VERILNMVEGVLLVVDSVEGPMPQTR-FVLKKALE--FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~~~qt~-~~l~~~~~--~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~p 245 (681)
+..+++.+|++++|+|+.+....+.. .++..+.. .++|+++|+||+|+...+. ...++...+... ..+|
T Consensus 68 ~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-v~~~~~~~~~~~-------~~~~ 139 (162)
T cd04106 68 TKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAV-ITNEEAEALAKR-------LQLP 139 (162)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccC-CCHHHHHHHHHH-------cCCe
Confidence 99999999999999998874332322 22333322 3789999999999865321 112233333322 2458
Q ss_pred EEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 246 vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
++++||++|. |+.++++.|...
T Consensus 140 ~~~~Sa~~~~----------~v~~l~~~l~~~ 161 (162)
T cd04106 140 LFRTSVKDDF----------NVTELFEYLAEK 161 (162)
T ss_pred EEEEECCCCC----------CHHHHHHHHHHh
Confidence 9999999998 899999988653
No 111
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.75 E-value=1.9e-17 Score=159.54 Aligned_cols=158 Identities=18% Similarity=0.211 Sum_probs=110.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
..+|+++|+.++|||||+++|+...+......+. |.++......+....+.+.||||||+..|...
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 67 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTI--------------GVEFGTRIIEVNGQKIKLQIWDTAGQERFRAV 67 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCccc--------------ceeEEEEEEEECCEEEEEEEEECCCcHHHHHH
Confidence 4689999999999999999998765432222221 33333333334444568899999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCCchh-hHHHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCc
Q 005713 169 VERILNMVEGVLLVVDSVEGPMPQ-TRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~~~q-t~~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~ 244 (681)
+..+++.+|++|+|+|.++...-+ ...++..... .+.|+++|+||+|+...+. ...++...+... ..+
T Consensus 68 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~-~~~~~~~~~~~~-------~~~ 139 (166)
T cd04122 68 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRD-VTYEEAKQFADE-------NGL 139 (166)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccC-cCHHHHHHHHHH-------cCC
Confidence 999999999999999998743322 2334444333 3578999999999975431 122333333322 245
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
+++++||++|. |+.++|+.+...+
T Consensus 140 ~~~e~Sa~~~~----------~i~e~f~~l~~~~ 163 (166)
T cd04122 140 LFLECSAKTGE----------NVEDAFLETAKKI 163 (166)
T ss_pred EEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 89999999999 8899888887643
No 112
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=1.7e-17 Score=159.54 Aligned_cols=161 Identities=27% Similarity=0.320 Sum_probs=114.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh--
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG-- 166 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~-- 166 (681)
.++|+++|++|+|||||+++|++....... ..++.|.......+.+++..+++|||||+.+..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~ 66 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVS---------------DIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKV 66 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceecc---------------CCCCCccCceeeEEEECCeeEEEEECCCCccccch
Confidence 468999999999999999999876432111 112455555555667778889999999975542
Q ss_pred ---------HHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhc
Q 005713 167 ---------GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNA 237 (681)
Q Consensus 167 ---------~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~ 237 (681)
......+..+|++++|+|+.++...+...++..+...+.|+++++||+|+...+. ...+++...+.+...
T Consensus 67 ~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~ 145 (174)
T cd01895 67 EEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDS-KTMKEFKKEIRRKLP 145 (174)
T ss_pred hccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccH-HHHHHHHHHHHhhcc
Confidence 1223456789999999999998888787888888888999999999999875431 122222222222111
Q ss_pred ccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 238 TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 238 ~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
. ....+++++||++|. |+..+++.+...
T Consensus 146 ~--~~~~~~~~~Sa~~~~----------~i~~~~~~l~~~ 173 (174)
T cd01895 146 F--LDYAPIVFISALTGQ----------GVDKLFDAIDEV 173 (174)
T ss_pred c--ccCCceEEEeccCCC----------CHHHHHHHHHHh
Confidence 0 113579999999998 888988887653
No 113
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.75 E-value=1e-17 Score=179.65 Aligned_cols=209 Identities=22% Similarity=0.230 Sum_probs=148.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc---
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD--- 164 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d--- 164 (681)
...+|||+|.+++|||||+|+|+++...+..... |+|.++-...++|++.++.+|||+|...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~a---------------GTTRD~I~~~~e~~~~~~~liDTAGiRrk~k 241 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIA---------------GTTRDSIDIEFERDGRKYVLIDTAGIRRKGK 241 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCC---------------CccccceeeeEEECCeEEEEEECCCCCcccc
Confidence 4688999999999999999999998666554433 9999999999999999999999999632
Q ss_pred -------hh-HHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCC---CcccchhhHHHHHH
Q 005713 165 -------FG-GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSA---RPDYVINSTFELFI 233 (681)
Q Consensus 165 -------f~-~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~---~~~~~~~ei~~~~~ 233 (681)
|. .....++..+|.++||+||.+|+..|+......+.+.|.++++|+||+|+.+. ..++...++...|.
T Consensus 242 i~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~ 321 (444)
T COG1160 242 ITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLP 321 (444)
T ss_pred cccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhc
Confidence 22 34456788899999999999999999999999999999999999999998754 22333344444443
Q ss_pred HhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCcccc-----CCceEEEEEEe-eecCCCceEEE
Q 005713 234 ELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEK-----DGALQMLATNL-EYDEHKGRIAI 307 (681)
Q Consensus 234 ~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~-----~~p~~~~V~~~-~~d~~~G~v~~ 307 (681)
.+.. .|++++||++|. ++..||+++.+....-.... +.-+...+..- -...+..++.+
T Consensus 322 ~l~~------a~i~~iSA~~~~----------~i~~l~~~i~~~~~~~~~ri~Ts~LN~~l~~a~~~~pP~~~~G~r~ki 385 (444)
T COG1160 322 FLDF------APIVFISALTGQ----------GLDKLFEAIKEIYECATRRISTSLLNRVLEDAVAKHPPPVRYGRRLKI 385 (444)
T ss_pred cccC------CeEEEEEecCCC----------ChHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCccCCceEEE
Confidence 3332 389999999999 77777777654322111000 00000000000 00112346777
Q ss_pred EEeecccccCCCEEEEccCC
Q 005713 308 GRLHAGVLRKGMEVRVCTSE 327 (681)
Q Consensus 308 grV~sG~lk~gd~v~~~~~~ 327 (681)
-...++..++-..+.+++..
T Consensus 386 ~Ya~q~~~~PP~fvlf~N~~ 405 (444)
T COG1160 386 KYATQVSTNPPTFVLFGNRP 405 (444)
T ss_pred EEEecCCCCCCEEEEEecch
Confidence 77778887877777766553
No 114
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.75 E-value=2.5e-17 Score=159.06 Aligned_cols=159 Identities=18% Similarity=0.152 Sum_probs=110.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
...+|+++|.+++|||||+++++...+......+. |++.......+......++||||||+.+|..
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~--------------~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~ 67 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTI--------------GIDFKIRTIELDGKKIKLQIWDTAGQERFRT 67 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCc--------------cceEEEEEEEECCEEEEEEEEeCCchHHHHH
Confidence 45789999999999999999998765433222211 3333223333333346889999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCCchh-hHHHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMPQ-TRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~q-t~~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
.....++.+|++|+|+|+++...-+ ...++..+.. .+.|+++|+||+|+.+.+ ....++....... ..
T Consensus 68 ~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~-------~~ 139 (167)
T cd01867 68 ITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKR-VVSKEEGEALADE-------YG 139 (167)
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc-CCCHHHHHHHHHH-------cC
Confidence 8889999999999999987743322 2333333333 368999999999997542 1122333333222 24
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
+|++++||++|. |+.++|+.+.+.+
T Consensus 140 ~~~~~~Sa~~~~----------~v~~~~~~i~~~~ 164 (167)
T cd01867 140 IKFLETSAKANI----------NVEEAFFTLAKDI 164 (167)
T ss_pred CEEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 589999999998 9999999988754
No 115
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.75 E-value=1.5e-17 Score=161.66 Aligned_cols=155 Identities=20% Similarity=0.239 Sum_probs=108.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
...+|+++|++++|||||+++|+..... .. +...|. ....+.+++..+++|||||+..|..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~--------------~~t~g~----~~~~~~~~~~~l~l~D~~G~~~~~~ 73 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDID-TI--------------SPTLGF----QIKTLEYEGYKLNIWDVGGQKTLRP 73 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCC-Cc--------------CCcccc----ceEEEEECCEEEEEEECCCCHHHHH
Confidence 4578999999999999999999865221 00 011122 2233455678999999999999998
Q ss_pred HHHHHHhhcceEEEEeeCCCCC-chhhHHHHHHHH----HcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 168 EVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKAL----EFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~----~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
.+..+++.+|++++|+|+.+.. ......++..+. ..+.|+++|+||+|+.+.. ..+++.+.+..... ...
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~---~~~~~~~~~~~~~~--~~~ 148 (173)
T cd04154 74 YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL---SEEEIREALELDKI--SSH 148 (173)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC---CHHHHHHHhCcccc--CCC
Confidence 8999999999999999998752 222233333332 2578999999999987543 23344443321111 123
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHh
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~ 276 (681)
.++++++||++|. |+.++++++.+
T Consensus 149 ~~~~~~~Sa~~g~----------gi~~l~~~l~~ 172 (173)
T cd04154 149 HWRIQPCSAVTGE----------GLLQGIDWLVD 172 (173)
T ss_pred ceEEEeccCCCCc----------CHHHHHHHHhc
Confidence 5689999999999 89999998764
No 116
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=3e-17 Score=183.07 Aligned_cols=159 Identities=28% Similarity=0.326 Sum_probs=118.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh-
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG- 166 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~- 166 (681)
...+|+++|++|+|||||+++|++....... ...|+|.+.....+.+++..+.+|||||+.+..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~---------------~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~ 236 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVS---------------DIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGK 236 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeec---------------CCCCceEEEEEEEEEECCeeEEEEECCCCCCCcc
Confidence 4689999999999999999999976432211 134888888878888899999999999975422
Q ss_pred ----------HHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhh
Q 005713 167 ----------GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN 236 (681)
Q Consensus 167 ----------~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~ 236 (681)
....++++.+|++|+|+|+.++...++..++..+.+.+.|+++|+||+|+.+.+ ...++.+.+....
T Consensus 237 ~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~---~~~~~~~~~~~~l 313 (435)
T PRK00093 237 VTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDEK---TMEEFKKELRRRL 313 (435)
T ss_pred hhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCHH---HHHHHHHHHHHhc
Confidence 223457889999999999999999999999999999999999999999987321 1222322222111
Q ss_pred cccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHh
Q 005713 237 ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (681)
Q Consensus 237 ~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~ 276 (681)
. ....+|++++||++|. |+..+++.+.+
T Consensus 314 ~--~~~~~~i~~~SA~~~~----------gv~~l~~~i~~ 341 (435)
T PRK00093 314 P--FLDYAPIVFISALTGQ----------GVDKLLEAIDE 341 (435)
T ss_pred c--cccCCCEEEEeCCCCC----------CHHHHHHHHHH
Confidence 1 1124689999999999 66666666544
No 117
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.75 E-value=2.5e-17 Score=158.78 Aligned_cols=158 Identities=19% Similarity=0.172 Sum_probs=109.3
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCccc
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSD 164 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~d 164 (681)
...++|+++|+.|+|||||+++|+.......... .++.......+.+.+ ..+.+|||||+.+
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~----------------t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 68 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGA----------------TIGVDFMIKTVEIKGEKIKLQIWDTAGQER 68 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCC----------------ceeeEEEEEEEEECCEEEEEEEEECCCcHH
Confidence 4568999999999999999999986433211111 122223333344554 5688999999999
Q ss_pred hhHHHHHHHhhcceEEEEeeCCCCCchhhH-HHH---HHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 165 FGGEVERILNMVEGVLLVVDSVEGPMPQTR-FVL---KKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 165 f~~e~~~~l~~aD~~llVvDa~~g~~~qt~-~~l---~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
|...+..+++.+|++|+|+|+.++...+.. .++ +.+...++|+++|+||+|+...+ ++..++...+....
T Consensus 69 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~--~i~~~~~~~~~~~~---- 142 (169)
T cd04114 69 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERR--EVSQQRAEEFSDAQ---- 142 (169)
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc--ccCHHHHHHHHHHc----
Confidence 999999999999999999998875332222 232 33333468999999999986432 23333333333221
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
..+++++||++|. |+..+|+.|.+.+
T Consensus 143 --~~~~~~~Sa~~~~----------gv~~l~~~i~~~~ 168 (169)
T cd04114 143 --DMYYLETSAKESD----------NVEKLFLDLACRL 168 (169)
T ss_pred --CCeEEEeeCCCCC----------CHHHHHHHHHHHh
Confidence 2579999999998 9999999988653
No 118
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.75 E-value=1.2e-17 Score=159.69 Aligned_cols=153 Identities=18% Similarity=0.275 Sum_probs=105.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccc-cccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFR-DNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~-~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
+|+++|..++|||||+++|........ ...+ -|.++ ..+.+++..+++|||||+.+|...+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t--------------~g~~~----~~~~~~~~~~~l~Dt~G~~~~~~~~ 62 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPT--------------VGFNV----ESFEKGNLSFTAFDMSGQGKYRGLW 62 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCc--------------cccce----EEEEECCEEEEEEECCCCHhhHHHH
Confidence 589999999999999999987532111 1111 13222 2345678999999999999999999
Q ss_pred HHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHH------HcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 170 ERILNMVEGVLLVVDSVEGPM-PQTRFVLKKAL------EFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~------~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
..+++.+|++|+|+|+++... .....++..+. ..++|+++|+||+|+.++.. ..++...+ .+.. ....
T Consensus 63 ~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~---~~~~~~~l-~~~~-~~~~ 137 (162)
T cd04157 63 EHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT---AVKITQLL-GLEN-IKDK 137 (162)
T ss_pred HHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC---HHHHHHHh-CCcc-ccCc
Confidence 999999999999999987532 22223333332 24789999999999875431 12222222 1110 0122
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHh
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~ 276 (681)
.++++++||++|. |+++++++|.+
T Consensus 138 ~~~~~~~Sa~~g~----------gv~~~~~~l~~ 161 (162)
T cd04157 138 PWHIFASNALTGE----------GLDEGVQWLQA 161 (162)
T ss_pred eEEEEEeeCCCCC----------chHHHHHHHhc
Confidence 4578999999999 99999998864
No 119
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.75 E-value=6.8e-18 Score=160.15 Aligned_cols=147 Identities=23% Similarity=0.356 Sum_probs=106.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh----
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG---- 166 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~---- 166 (681)
+|+++|.+++|||||+|+|++...... + -.|+|+......+.+.+..+.|+|+||..++.
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~------n----------~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ 65 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVG------N----------WPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSE 65 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEE------E----------STTSSSEEEEEEEEETTEEEEEEE----SSSSSSSH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceec------C----------CCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCc
Confidence 699999999999999999998653221 1 12889999999999999999999999964432
Q ss_pred --HHHHHHH--hhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 167 --GEVERIL--NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 167 --~e~~~~l--~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
..+..++ ...|++|+|+||+. ..+...++.++.+.|+|+++|+||+|.....- ..-+...+-.. +
T Consensus 66 ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g--~~id~~~Ls~~-------L 134 (156)
T PF02421_consen 66 EERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERKG--IEIDAEKLSER-------L 134 (156)
T ss_dssp HHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTT--EEE-HHHHHHH-------H
T ss_pred HHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcC--CEECHHHHHHH-------h
Confidence 1223333 47899999999987 56777888889999999999999999753321 11112222222 2
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHH
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESI 274 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I 274 (681)
.+|++++||++|. |+++|+++|
T Consensus 135 g~pvi~~sa~~~~----------g~~~L~~~I 156 (156)
T PF02421_consen 135 GVPVIPVSARTGE----------GIDELKDAI 156 (156)
T ss_dssp TS-EEEEBTTTTB----------THHHHHHHH
T ss_pred CCCEEEEEeCCCc----------CHHHHHhhC
Confidence 4689999999999 899998875
No 120
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.75 E-value=3.1e-17 Score=157.24 Aligned_cols=156 Identities=21% Similarity=0.270 Sum_probs=108.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~ 170 (681)
+|+++|++++|||||+++|+..........++ |.+.......+......++||||||+.+|.....
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTI--------------GIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRN 67 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCcc--------------ceeEEEEEEEECCeEEEEEEEECCccHHHHHHHH
Confidence 79999999999999999999876543222222 3333333344444557899999999999998888
Q ss_pred HHHhhcceEEEEeeCCCCCchh-hHHHHHHHHH--------cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 171 RILNMVEGVLLVVDSVEGPMPQ-TRFVLKKALE--------FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 171 ~~l~~aD~~llVvDa~~g~~~q-t~~~l~~~~~--------~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
.+++.+|++|+|+|.++...-+ ...++..+.. .+.|+++|+||+|+.... ....++......+
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~------- 139 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHR-AVSEDEGRLWAES------- 139 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccccc-ccCHHHHHHHHHH-------
Confidence 8999999999999988743222 2233333322 357999999999986322 1112222222221
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
..++++++||++|. |+.++++.|++.+
T Consensus 140 ~~~~~~~~Sa~~~~----------gi~~l~~~l~~~l 166 (168)
T cd04119 140 KGFKYFETSACTGE----------GVNEMFQTLFSSI 166 (168)
T ss_pred cCCeEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 23579999999999 9999999998764
No 121
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.75 E-value=1.9e-17 Score=158.74 Aligned_cols=157 Identities=20% Similarity=0.209 Sum_probs=106.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|++|+|||||+++|+..........+. + +.......+......+.+|||||+.+|....
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~--------------~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~ 65 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTI--------------E-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMR 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCch--------------h-hhEEEEEEECCEEEEEEEEECCCcccchHHH
Confidence 379999999999999999999765432222211 0 1111222233334688999999999999999
Q ss_pred HHHHhhcceEEEEeeCCCCCch-hhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCc
Q 005713 170 ERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~ 244 (681)
..+++.+|++++|+|+.+...- ....++..+.+ .+.|+++|+||+|+...+. ...++....... ...
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~-~~~~~~~~~~~~-------~~~ 137 (164)
T smart00173 66 DQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERV-VSTEEGKELARQ-------WGC 137 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccce-EcHHHHHHHHHH-------cCC
Confidence 9999999999999998874222 12222222222 3689999999999875431 112222222222 235
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
+++++||++|. |+.++|+.+++.+.
T Consensus 138 ~~~~~Sa~~~~----------~i~~l~~~l~~~~~ 162 (164)
T smart00173 138 PFLETSAKERV----------NVDEAFYDLVREIR 162 (164)
T ss_pred EEEEeecCCCC----------CHHHHHHHHHHHHh
Confidence 89999999999 99999999988764
No 122
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.75 E-value=3.2e-17 Score=158.47 Aligned_cols=159 Identities=19% Similarity=0.179 Sum_probs=112.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
...+|+++|++++|||||+++++..........+. |.+.......+......++||||||+..|..
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 68 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI--------------GVEFGARMITIDGKQIKLQIWDTAGQESFRS 68 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc--------------ceeEEEEEEEECCEEEEEEEEECCCcHHHHH
Confidence 45799999999999999999998765433222221 4444444444444456899999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCCchhhH-HHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMPQTR-FVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~qt~-~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
....+++.+|++|+|+|+++...-+.. .++..+.. .+.|+++|+||+|+...+ ....++....... ..
T Consensus 69 ~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~-~~~~~~~~~~~~~-------~~ 140 (168)
T cd01866 69 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRR-EVSYEEGEAFAKE-------HG 140 (168)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc-CCCHHHHHHHHHH-------cC
Confidence 889999999999999999864333322 33333433 368999999999987432 1122333333322 23
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
++++++||++|. |+.++|+.+.+.+
T Consensus 141 ~~~~e~Sa~~~~----------~i~~~~~~~~~~~ 165 (168)
T cd01866 141 LIFMETSAKTAS----------NVEEAFINTAKEI 165 (168)
T ss_pred CEEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 579999999999 8899998887654
No 123
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.74 E-value=2.3e-17 Score=157.19 Aligned_cols=155 Identities=17% Similarity=0.169 Sum_probs=106.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|.+|+|||||+++|+...+......+. +.+ ......+......++||||||+.+|...+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~--------------~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~ 66 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI--------------EDS-YRKQVVIDGETCLLDILDTAGQEEYSAMR 66 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcc--------------hhe-EEEEEEECCEEEEEEEEECCCCcchHHHH
Confidence 479999999999999999999765432222221 111 11222233333568899999999999999
Q ss_pred HHHHhhcceEEEEeeCCCCCch-hhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCc
Q 005713 170 ERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~ 244 (681)
..+++.+|++++|+|..+.... ....++..+.+ .++|+++|+||+|+.... ....++...... ..+
T Consensus 67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~-------~~~ 137 (162)
T cd04138 67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAART--VSSRQGQDLAKS-------YGI 137 (162)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccce--ecHHHHHHHHHH-------hCC
Confidence 9999999999999998763221 22223333332 368999999999986521 222333333322 235
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
+++++||++|. |+.++|+.+++.+
T Consensus 138 ~~~~~Sa~~~~----------gi~~l~~~l~~~~ 161 (162)
T cd04138 138 PYIETSAKTRQ----------GVEEAFYTLVREI 161 (162)
T ss_pred eEEEecCCCCC----------CHHHHHHHHHHHh
Confidence 79999999999 9999999988654
No 124
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.74 E-value=3.3e-17 Score=182.44 Aligned_cols=154 Identities=26% Similarity=0.398 Sum_probs=123.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCc--------
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH-------- 162 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh-------- 162 (681)
+|+|+|++|+|||||+++|++....+... ..|+|.+.....+.|.+..++||||||+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~---------------~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~ 65 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSD---------------TPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLD 65 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecC---------------CCCcccCceEEEEEECCeEEEEEECCCCCCcchhHH
Confidence 48999999999999999998765332111 1277877778888999999999999997
Q ss_pred cchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 163 SDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 163 ~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
..+...+..+++.+|++|+|+|+.++....+..+++.+++.++|+++|+||+|+...+. . ..+ +..++..
T Consensus 66 ~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~--~---~~~-~~~lg~~---- 135 (429)
T TIGR03594 66 KQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDA--V---AAE-FYSLGFG---- 135 (429)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccc--c---HHH-HHhcCCC----
Confidence 33455667788999999999999999999999999999999999999999999865431 1 111 2233321
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
+++++||++|. |+..|++.+.+.++..
T Consensus 136 --~~~~vSa~~g~----------gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 136 --EPIPISAEHGR----------GIGDLLDAILELLPEE 162 (429)
T ss_pred --CeEEEeCCcCC----------ChHHHHHHHHHhcCcc
Confidence 58999999999 9999999999998764
No 125
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.74 E-value=3.5e-17 Score=163.20 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=109.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEe-eCCeEEEEEeCCCccchhHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT-YNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~-~~~~~i~iiDTPGh~df~~e 168 (681)
.+|+++|..++|||||+++|+...+......+. |.........+. ...+.+.||||||+..|...
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~--------------~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~ 66 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATI--------------GVDFALKVIEWDPNTVVRLQLWDIAGQERFGGM 66 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce--------------eEEEEEEEEEECCCCEEEEEEEECCCchhhhhh
Confidence 379999999999999999999765432222221 222223333333 34578999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCCchhhH-HHHHHHH-------HcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 169 VERILNMVEGVLLVVDSVEGPMPQTR-FVLKKAL-------EFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~~~qt~-~~l~~~~-------~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
+..+++.+|++|+|+|.++...-+.. .++..+. ..++|+++|+||+|+...+ ....+++.++....+.
T Consensus 67 ~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~-~~~~~~~~~~~~~~~~--- 142 (201)
T cd04107 67 TRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRL-AKDGEQMDQFCKENGF--- 142 (201)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccc-ccCHHHHHHHHHHcCC---
Confidence 99999999999999998874322222 2222222 1358999999999986422 1223344444433221
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.+++++||++|. |+.++|+.+.+.+.
T Consensus 143 ---~~~~e~Sak~~~----------~v~e~f~~l~~~l~ 168 (201)
T cd04107 143 ---IGWFETSAKEGI----------NIEEAMRFLVKNIL 168 (201)
T ss_pred ---ceEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 469999999998 88999999987764
No 126
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.74 E-value=3.9e-17 Score=157.60 Aligned_cols=158 Identities=19% Similarity=0.194 Sum_probs=106.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|++++|||||+++|+..........+. +.+.......+......+++|||||+.+|....
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 66 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI--------------GADFLTKEVTVDDKLVTLQIWDTAGQERFQSLG 66 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCcc--------------ceEEEEEEEEECCEEEEEEEEeCCChHHHHhHH
Confidence 379999999999999999998765432221111 222222222222233577899999999999999
Q ss_pred HHHHhhcceEEEEeeCCCCCchhhH-HHHHHHHH-------cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 170 ERILNMVEGVLLVVDSVEGPMPQTR-FVLKKALE-------FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~qt~-~~l~~~~~-------~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
..+++.+|++|+|+|+.+....+.. .+...... .++|+++|+||+|+...+ ....+++.......+
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~----- 140 (172)
T cd01862 67 VAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKR-QVSTKKAQQWCQSNG----- 140 (172)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccccc-ccCHHHHHHHHHHcC-----
Confidence 9999999999999999875432222 22121111 268999999999997422 112333444333222
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.++++++||++|. |+..+++.+.+.+
T Consensus 141 -~~~~~~~Sa~~~~----------gv~~l~~~i~~~~ 166 (172)
T cd01862 141 -NIPYFETSAKEAI----------NVEQAFETIARKA 166 (172)
T ss_pred -CceEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 2579999999999 8999999988754
No 127
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.74 E-value=3.5e-17 Score=163.37 Aligned_cols=156 Identities=18% Similarity=0.213 Sum_probs=107.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~ 170 (681)
.|+++|..|+|||||+.++....+......+. |+.+..+...+....+.++||||+|+..|...+.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti--------------~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGV--------------GVDFKIKTVELRGKKIRLQIWDTAGQERFNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcc--------------eeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHH
Confidence 58999999999999999998766543222222 3333333333333347889999999999999999
Q ss_pred HHHhhcceEEEEeeCCCCCchhhH-HHHHHHHH---cCCEEEEEEeecCCCCCCcccch-hhHHHHHHHhhcccccCCce
Q 005713 171 RILNMVEGVLLVVDSVEGPMPQTR-FVLKKALE---FGHAVVVVVNKIDRPSARPDYVI-NSTFELFIELNATDEQCDFQ 245 (681)
Q Consensus 171 ~~l~~aD~~llVvDa~~g~~~qt~-~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~-~ei~~~~~~l~~~~~~~~~p 245 (681)
.+++.+|++|+|+|.++...-+.. .++..+.. .++|+++|+||+|+...+ ++. .+..++..++ ..++
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~--~v~~~~~~~~a~~~------~~~~ 139 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR--EISRQQGEKFAQQI------TGMR 139 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc--ccCHHHHHHHHHhc------CCCE
Confidence 999999999999999875433332 33333333 358999999999986432 121 1222221111 1357
Q ss_pred EEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 246 vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
++++||++|. |+.++|+.+++.+
T Consensus 140 ~~etSAktg~----------gV~e~F~~l~~~~ 162 (202)
T cd04120 140 FCEASAKDNF----------NVDEIFLKLVDDI 162 (202)
T ss_pred EEEecCCCCC----------CHHHHHHHHHHHH
Confidence 9999999999 8888888887655
No 128
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.74 E-value=3.9e-17 Score=157.16 Aligned_cols=158 Identities=16% Similarity=0.184 Sum_probs=109.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
..+|+++|..|+|||||+++|+...+......+. |++.......+......+.||||||+.+|...
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 67 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTI--------------GVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 67 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc--------------ceeEEEEEEEECCEEEEEEEEECCCcHhHHHH
Confidence 4689999999999999999998765432221111 33333333333333467899999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCc
Q 005713 169 VERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~ 244 (681)
...+++.+|++|+|+|+++... .....++..+.. .++|+++|+||+|+...+. ...++...... ...+
T Consensus 68 ~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~ 139 (166)
T cd01869 68 TSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRV-VDYSEAQEFAD-------ELGI 139 (166)
T ss_pred HHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccC-CCHHHHHHHHH-------HcCC
Confidence 9999999999999999987322 222334444433 3589999999999865431 11223333222 1246
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
|++++||++|. |+.++|+.+.+.+
T Consensus 140 ~~~~~Sa~~~~----------~v~~~~~~i~~~~ 163 (166)
T cd01869 140 PFLETSAKNAT----------NVEQAFMTMAREI 163 (166)
T ss_pred eEEEEECCCCc----------CHHHHHHHHHHHH
Confidence 89999999999 8999999988754
No 129
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.74 E-value=5e-17 Score=156.15 Aligned_cols=158 Identities=19% Similarity=0.251 Sum_probs=110.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
..+|+++|.+++|||||+++|+..........+. |.+.......+......+.+|||||+..|...
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 68 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTI--------------GVEFATRSIQIDGKTIKAQIWDTAGQERYRAI 68 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc--------------ceEEEEEEEEECCEEEEEEEEeCCChHHHHHH
Confidence 4689999999999999999998765433222221 33333333333333357899999999999998
Q ss_pred HHHHHhhcceEEEEeeCCCCCchh-hHHHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCc
Q 005713 169 VERILNMVEGVLLVVDSVEGPMPQ-TRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~~~q-t~~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~ 244 (681)
....++.+|++|+|+|+++....+ ...++..+.+ .++|+++|+||+|+...+ ....++...+... ..+
T Consensus 69 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~-~~~~~~~~~~~~~-------~~~ 140 (165)
T cd01868 69 TSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLR-AVPTEEAKAFAEK-------NGL 140 (165)
T ss_pred HHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc-cCCHHHHHHHHHH-------cCC
Confidence 999999999999999998633222 2234444433 258999999999986543 1122333333221 245
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
+++++||++|. |+..+++.+.+.+
T Consensus 141 ~~~~~Sa~~~~----------~v~~l~~~l~~~i 164 (165)
T cd01868 141 SFIETSALDGT----------NVEEAFKQLLTEI 164 (165)
T ss_pred EEEEEECCCCC----------CHHHHHHHHHHHh
Confidence 79999999999 9999999998764
No 130
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=3.4e-17 Score=158.68 Aligned_cols=164 Identities=21% Similarity=0.178 Sum_probs=128.4
Q ss_pred cCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc
Q 005713 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (681)
Q Consensus 85 ~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d 164 (681)
+.+...+|+++|.+++|||+|+.++...++......+. ||.+......+.....+++||||.|++.
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTi--------------GIDFk~kti~l~g~~i~lQiWDtaGQer 73 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTI--------------GIDFKIKTIELDGKKIKLQIWDTAGQER 73 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceE--------------EEEEEEEEEEeCCeEEEEEEEEcccchh
Confidence 45678999999999999999999999998887777766 8888888888887888999999999999
Q ss_pred hhHHHHHHHhhcceEEEEeeCCCC-CchhhHHHHHHHHHc---CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 165 FGGEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 165 f~~e~~~~l~~aD~~llVvDa~~g-~~~qt~~~l~~~~~~---gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
|......+++.|++++||+|.+.. -+...+.|++...++ ++|.++|+||+|+...+ .-..++-+.+..++
T Consensus 74 f~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R-~V~~e~ge~lA~e~----- 147 (207)
T KOG0078|consen 74 FRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKR-QVSKERGEALAREY----- 147 (207)
T ss_pred HHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccc-cccHHHHHHHHHHh-----
Confidence 999999999999999999997753 333444455555544 68999999999997643 12223333333333
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
.++++++||++|. |+.+.|-.+.+.+-.
T Consensus 148 --G~~F~EtSAk~~~----------NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 148 --GIKFFETSAKTNF----------NIEEAFLSLARDILQ 175 (207)
T ss_pred --CCeEEEccccCCC----------CHHHHHHHHHHHHHh
Confidence 4579999999999 777777777766543
No 131
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.74 E-value=3.9e-17 Score=161.42 Aligned_cols=160 Identities=14% Similarity=0.161 Sum_probs=112.9
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
+...+|+++|..++|||||+.++....+......+. |.........+....+.++||||||+.+|.
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~--------------~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~ 69 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNM--------------GIDYKTTTILLDGRRVKLQLWDTSGQGRFC 69 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc--------------eeEEEEEEEEECCEEEEEEEEeCCCcHHHH
Confidence 356899999999999999999998754432211111 333322333333334789999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHHc--CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~~--gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
..+..+++.+|++|||+|.++... .....++..+... +.|+|||+||+|+...+. -..++.+.+... ..
T Consensus 70 ~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~-v~~~~~~~~a~~-------~~ 141 (189)
T cd04121 70 TIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQ-VATEQAQAYAER-------NG 141 (189)
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccC-CCHHHHHHHHHH-------cC
Confidence 999999999999999999887432 3334455555443 689999999999865431 123344443322 24
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
++++++||++|. |++++|+.+.+.+
T Consensus 142 ~~~~e~SAk~g~----------~V~~~F~~l~~~i 166 (189)
T cd04121 142 MTFFEVSPLCNF----------NITESFTELARIV 166 (189)
T ss_pred CEEEEecCCCCC----------CHHHHHHHHHHHH
Confidence 579999999999 8899999888755
No 132
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.74 E-value=3.6e-17 Score=156.44 Aligned_cols=156 Identities=17% Similarity=0.182 Sum_probs=105.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|.+|+|||||+++++...+......+. + ........+......+.||||||+.+|....
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~--------------~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTI--------------E-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCch--------------h-hhEEEEEEECCEEEEEEEEECCCccccchHH
Confidence 579999999999999999999765432222111 1 0111222233334678899999999999999
Q ss_pred HHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCc
Q 005713 170 ERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~ 244 (681)
..+++.+|++++|+|.++... .....++..+.. .++|+++|+||+|+...+. ...++...+... ...
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~-------~~~ 138 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERV-VSREEGQALARQ-------WGC 138 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccce-ecHHHHHHHHHH-------cCC
Confidence 999999999999999876322 223333444433 2689999999999865321 111222222111 235
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
|++++||++|. |+.++|+.+++.+
T Consensus 139 ~~~~~Sa~~~~----------~v~~l~~~l~~~~ 162 (163)
T cd04136 139 PFYETSAKSKI----------NVDEVFADLVRQI 162 (163)
T ss_pred eEEEecCCCCC----------CHHHHHHHHHHhc
Confidence 89999999999 9999999998754
No 133
>COG1159 Era GTPase [General function prediction only]
Probab=99.74 E-value=2.6e-17 Score=167.83 Aligned_cols=161 Identities=26% Similarity=0.370 Sum_probs=120.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc----
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD---- 164 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d---- 164 (681)
.--|+|+|.+|+|||||+|+|+++...+..+.. .+|...-..-+..++..+.|+||||.-.
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~---------------QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~ 70 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKP---------------QTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHA 70 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCc---------------chhhhheeEEEEcCCceEEEEeCCCCCCcchH
Confidence 456999999999999999999998665543221 2233333334556689999999999532
Q ss_pred ----hhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 165 ----FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 165 ----f~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
....+..++..+|.+++|+|+.++....++.+++.++..+.|+++++||+|+.... ..+..+.+.+.......
T Consensus 71 l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~--~~l~~~~~~~~~~~~f~- 147 (298)
T COG1159 71 LGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPK--TVLLKLIAFLKKLLPFK- 147 (298)
T ss_pred HHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcH--HHHHHHHHHHHhhCCcc-
Confidence 23555667888999999999999999999999999998778999999999987543 21233333333222211
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
.++++||++|. ++..|++.+..++|.-
T Consensus 148 ----~ivpiSA~~g~----------n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 148 ----EIVPISALKGD----------NVDTLLEIIKEYLPEG 174 (298)
T ss_pred ----eEEEeeccccC----------CHHHHHHHHHHhCCCC
Confidence 58999999999 8999999999999754
No 134
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.74 E-value=5.4e-17 Score=156.81 Aligned_cols=158 Identities=18% Similarity=0.188 Sum_probs=108.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
...+|+++|..++|||||+++++..........+. |.........+......+.||||||+..|..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~ 69 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI--------------GVEFLNKDLEVDGHFVTLQIWDTAGQERFRS 69 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCce--------------eeEEEEEEEEECCeEEEEEEEeCCChHHHHH
Confidence 45789999999999999999998754432221111 3333233333444456788999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCCchhhH-HHHHHHHH-------cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccc
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMPQTR-FVLKKALE-------FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~qt~-~~l~~~~~-------~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~ 239 (681)
....+++.+|++|+|+|.++....+.. .+...+.. .++|+++|+||+|+... ....+++..+..+.+
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~--- 144 (170)
T cd04116 70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPER--QVSTEEAQAWCRENG--- 144 (170)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccccc--ccCHHHHHHHHHHCC---
Confidence 999999999999999998864322222 22222221 35799999999998622 122344444443322
Q ss_pred ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 240 ~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
..+++++||++|. |+..+|+.+++.
T Consensus 145 ---~~~~~e~Sa~~~~----------~v~~~~~~~~~~ 169 (170)
T cd04116 145 ---DYPYFETSAKDAT----------NVAAAFEEAVRR 169 (170)
T ss_pred ---CCeEEEEECCCCC----------CHHHHHHHHHhh
Confidence 2478999999998 899999998764
No 135
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.74 E-value=6.1e-17 Score=154.63 Aligned_cols=154 Identities=18% Similarity=0.186 Sum_probs=108.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCccchhH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDFGG 167 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 167 (681)
++|+++|++++|||||+++|+.......... +++.+.....+.+++ ..+++|||||+..|..
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~ 64 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQA----------------TIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRS 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCC----------------ceeeeEEEEEEEECCEEEEEEEEECCCcHHHHH
Confidence 4799999999999999999987655432211 333333333444444 5789999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCCch-hhHHHHHHHH-Hc--CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMP-QTRFVLKKAL-EF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~-~~--gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
.+...++.+|++++|+|.++.... ....++.... .. +.|+++|+||+|+...+ ....++....... ..
T Consensus 65 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~-~~~~~~~~~~~~~-------~~ 136 (161)
T cd01861 65 LIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKR-QVSTEEGEKKAKE-------LN 136 (161)
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccC-ccCHHHHHHHHHH-------hC
Confidence 999999999999999999875332 2233444332 33 38999999999985332 1222333333222 23
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
++++++||++|. |+.++++.+.+.
T Consensus 137 ~~~~~~Sa~~~~----------~v~~l~~~i~~~ 160 (161)
T cd01861 137 AMFIETSAKAGH----------NVKELFRKIASA 160 (161)
T ss_pred CEEEEEeCCCCC----------CHHHHHHHHHHh
Confidence 579999999999 999999998765
No 136
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.73 E-value=7.8e-17 Score=181.13 Aligned_cols=157 Identities=21% Similarity=0.387 Sum_probs=121.3
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc--
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD-- 164 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d-- 164 (681)
...++|+|+|.+|+|||||+++|++....... ...|+|.+.....+.+.+..++||||||+..
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~---------------~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~ 100 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAVVE---------------DVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA 100 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCccccc---------------CCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc
Confidence 34688999999999999999999875432211 1237787777778889999999999999863
Q ss_pred ------hhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcc
Q 005713 165 ------FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT 238 (681)
Q Consensus 165 ------f~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~ 238 (681)
+...+..+++.||++|+|+|++++.......++..+...++|+++|+||+|+..... +..+.+ .++.
T Consensus 101 ~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~-----~~~~~~-~~g~- 173 (472)
T PRK03003 101 KGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA-----DAAALW-SLGL- 173 (472)
T ss_pred hhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch-----hhHHHH-hcCC-
Confidence 445566788999999999999998877777788888888999999999999864321 111111 2222
Q ss_pred cccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 239 DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 239 ~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
.. .+++||++|. |+.+|++.+.+.++.
T Consensus 174 ----~~-~~~iSA~~g~----------gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 174 ----GE-PHPVSALHGR----------GVGDLLDAVLAALPE 200 (472)
T ss_pred ----CC-eEEEEcCCCC----------CcHHHHHHHHhhccc
Confidence 12 4689999999 999999999998865
No 137
>PTZ00369 Ras-like protein; Provisional
Probab=99.73 E-value=4.6e-17 Score=160.79 Aligned_cols=158 Identities=17% Similarity=0.183 Sum_probs=109.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
..+|+++|+.|+|||||+++++...+......+. +.++ .....+....+.++||||||+.+|...
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l 69 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTI--------------EDSY-RKQCVIDEETCLLDILDTAGQEEYSAM 69 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCch--------------hhEE-EEEEEECCEEEEEEEEeCCCCccchhh
Confidence 4789999999999999999999765432221211 1111 122334444567899999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 169 VERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
+..+++.+|++|+|+|+++... .....++..+.. .++|+++|+||+|+...+.-. ..+....... ..
T Consensus 70 ~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~-~~~~~~~~~~-------~~ 141 (189)
T PTZ00369 70 RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVS-TGEGQELAKS-------FG 141 (189)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccC-HHHHHHHHHH-------hC
Confidence 9999999999999999887432 223333333332 268999999999986533111 1122222211 23
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
+|++++||++|. |+.++|+.+++.+.
T Consensus 142 ~~~~e~Sak~~~----------gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 142 IPFLETSAKQRV----------NVDEAFYELVREIR 167 (189)
T ss_pred CEEEEeeCCCCC----------CHHHHHHHHHHHHH
Confidence 589999999999 88999999887664
No 138
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.73 E-value=4.6e-17 Score=155.57 Aligned_cols=151 Identities=21% Similarity=0.231 Sum_probs=104.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~ 170 (681)
+|+++|+.++|||||+++|....... ... |+......+.+.+..++||||||+.+|...+.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~------------------t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 61 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIP------------------TIGFNVETVTYKNLKFQVWDLGGQTSIRPYWR 61 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCC------------------ccCcCeEEEEECCEEEEEEECCCCHHHHHHHH
Confidence 58999999999999999996543221 000 11111224556788999999999999999999
Q ss_pred HHHhhcceEEEEeeCCCCCc-hhhHHHHHHH-HH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcc-cccCCc
Q 005713 171 RILNMVEGVLLVVDSVEGPM-PQTRFVLKKA-LE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT-DEQCDF 244 (681)
Q Consensus 171 ~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~-~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~-~~~~~~ 244 (681)
.++..+|++|+|+|+++... ......+... .. .++|+++|+||+|+.++. ...++...+ +.. .....+
T Consensus 62 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~---~~~~i~~~~---~~~~~~~~~~ 135 (158)
T cd04151 62 CYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL---SEAEISEKL---GLSELKDRTW 135 (158)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC---CHHHHHHHh---CccccCCCcE
Confidence 99999999999999887422 1222333322 21 378999999999987543 122232222 111 112246
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHh
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~ 276 (681)
+++++||++|. |+.++++.+.+
T Consensus 136 ~~~~~Sa~~~~----------gi~~l~~~l~~ 157 (158)
T cd04151 136 SIFKTSAIKGE----------GLDEGMDWLVN 157 (158)
T ss_pred EEEEeeccCCC----------CHHHHHHHHhc
Confidence 89999999999 99999998864
No 139
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.73 E-value=4.9e-17 Score=157.15 Aligned_cols=156 Identities=16% Similarity=0.185 Sum_probs=108.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|..|+|||||+++++..........+. |+.+.........+...+.+|||||+.+|....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL--------------GVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLR 66 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce--------------eeEEEEEEEEECCEEEEEEEEECCCChhhcccc
Confidence 379999999999999999998654432222211 333333223333445789999999999998888
Q ss_pred HHHHhhcceEEEEeeCCCCCchhhH-HHHHHHHHc--CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceE
Q 005713 170 ERILNMVEGVLLVVDSVEGPMPQTR-FVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQA 246 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~qt~-~~l~~~~~~--gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pv 246 (681)
...++.+|++|+|+|.++...-+.. .++..+... ++|+++|+||+|+.... +..+..... . ...+++
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~---~~~~~~~~~-~------~~~~~~ 136 (166)
T cd00877 67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRK---VKAKQITFH-R------KKNLQY 136 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccccc---CCHHHHHHH-H------HcCCEE
Confidence 8889999999999999875443332 333444332 69999999999987322 111211111 1 124579
Q ss_pred EEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 247 IYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 247 i~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
+++||++|. |+..+|+.+.+.+.
T Consensus 137 ~e~Sa~~~~----------~v~~~f~~l~~~~~ 159 (166)
T cd00877 137 YEISAKSNY----------NFEKPFLWLARKLL 159 (166)
T ss_pred EEEeCCCCC----------ChHHHHHHHHHHHH
Confidence 999999999 99999999987763
No 140
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.73 E-value=6.7e-17 Score=154.56 Aligned_cols=156 Identities=21% Similarity=0.184 Sum_probs=108.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCccchhH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDFGG 167 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 167 (681)
.+|+++|++++|||||+++|+.......... .++.......+.+.+ ..+++|||||+..|..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 64 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKS----------------TIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRS 64 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCC----------------ceeeEEEEEEEEECCEEEEEEEEECCChHHHHH
Confidence 3799999999999999999987644222111 222222233344444 6889999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCCchhhH-HHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMPQTR-FVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~qt~-~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
.....++.+|++|+|+|+.+....+.. .++..+.. .++|+++|+||+|+...+ +...+.+..... ...
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~-~~~~~~~~~~~~-------~~~ 136 (164)
T smart00175 65 ITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQR-QVSREEAEAFAE-------EHG 136 (164)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccccc-CCCHHHHHHHHH-------HcC
Confidence 999999999999999999875433332 23334333 368999999999986432 111222333222 124
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
++++++||++|. |+..+++.|.+.++
T Consensus 137 ~~~~e~Sa~~~~----------~i~~l~~~i~~~~~ 162 (164)
T smart00175 137 LPFFETSAKTNT----------NVEEAFEELAREIL 162 (164)
T ss_pred CeEEEEeCCCCC----------CHHHHHHHHHHHHh
Confidence 679999999998 99999999988763
No 141
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.73 E-value=5.2e-17 Score=159.61 Aligned_cols=162 Identities=21% Similarity=0.241 Sum_probs=107.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEE-eeCCeEEEEEeCCCccchhH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSI-TYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~-~~~~~~i~iiDTPGh~df~~ 167 (681)
..+|+++|+.|+|||||+++++...+... ..+. |.+........ .+.+..++||||||+..|..
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~--------------~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 67 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTK--------------GFNTEKIKVSLGNSKGITFHFWDVGGQEKLRP 67 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCcc--------------ccceeEEEeeccCCCceEEEEEECCCcHhHHH
Confidence 35799999999999999999987654311 1111 33332222211 33568999999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCCc-hhhHHHH----HHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 168 EVERILNMVEGVLLVVDSVEGPM-PQTRFVL----KKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l----~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
.+..+++.+|++|+|+|+++... .....++ ......++|+++|+||+|+.... ..+++...+ .+.......
T Consensus 68 ~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~---~~~~~~~~~-~~~~~~~~~ 143 (183)
T cd04152 68 LWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNAL---SVSEVEKLL-ALHELSAST 143 (183)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccC---CHHHHHHHh-CccccCCCC
Confidence 88999999999999999887422 1122222 22233579999999999986431 122222221 111111112
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.++++++||++|. |+.++++.|.+.+.
T Consensus 144 ~~~~~~~SA~~~~----------gi~~l~~~l~~~l~ 170 (183)
T cd04152 144 PWHVQPACAIIGE----------GLQEGLEKLYEMIL 170 (183)
T ss_pred ceEEEEeecccCC----------CHHHHHHHHHHHHH
Confidence 3578999999999 99999999887663
No 142
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.73 E-value=7.2e-17 Score=157.45 Aligned_cols=159 Identities=16% Similarity=0.152 Sum_probs=108.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEe----------eCCeEEEEE
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT----------YNDTKINII 157 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~----------~~~~~i~ii 157 (681)
...+|+++|..++|||||++++....+......++ |.++......+. .....+.||
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 68 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTV--------------GIDFREKRVVYNSSGPGGTLGRGQRIHLQLW 68 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCcc--------------ceEEEEEEEEEcCccccccccCCCEEEEEEE
Confidence 45789999999999999999998765533222222 222222222221 123678999
Q ss_pred eCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhh-HHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHH
Q 005713 158 DTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQT-RFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELF 232 (681)
Q Consensus 158 DTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt-~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~ 232 (681)
||||+..|......+++.+|++|+|+|+++...-+. ..++..+.. .+.|+++|+||+|+.+.+. ...++...+.
T Consensus 69 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~-v~~~~~~~~~ 147 (180)
T cd04127 69 DTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQ-VSEEQAKALA 147 (180)
T ss_pred eCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCc-cCHHHHHHHH
Confidence 999999999999999999999999999886332222 233334433 2578999999999865431 1122333332
Q ss_pred HHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 233 IELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 233 ~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.. ..+|++++||++|. |++++++.+.+.+
T Consensus 148 ~~-------~~~~~~e~Sak~~~----------~v~~l~~~l~~~~ 176 (180)
T cd04127 148 DK-------YGIPYFETSAATGT----------NVEKAVERLLDLV 176 (180)
T ss_pred HH-------cCCeEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 22 23579999999999 8899999887654
No 143
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.73 E-value=6.3e-17 Score=158.38 Aligned_cols=152 Identities=21% Similarity=0.257 Sum_probs=107.5
Q ss_pred hccCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCc
Q 005713 83 LMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (681)
Q Consensus 83 ~~~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh 162 (681)
+.+..+..+|+|+|++|+|||||+++|++..+....... .|.|.......+ + ..+.+|||||+
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~--------------~~~t~~~~~~~~--~-~~~~liDtpG~ 74 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKT--------------PGRTQLINFFEV--N-DGFRLVDLPGY 74 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCC--------------CCcceEEEEEEe--C-CcEEEEeCCCC
Confidence 344567889999999999999999999876432111111 144544333222 2 37999999996
Q ss_pred c----------chhHHHHHHHhh---cceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCC-CcccchhhH
Q 005713 163 S----------DFGGEVERILNM---VEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSA-RPDYVINST 228 (681)
Q Consensus 163 ~----------df~~e~~~~l~~---aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~-~~~~~~~ei 228 (681)
. +|...+..+++. +|++++|+|+..+...++..+++.+...++|+++|+||+|+... +.+...+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i 154 (179)
T TIGR03598 75 GYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKI 154 (179)
T ss_pred ccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 3 344444555553 57999999999999888888888888889999999999998643 233445555
Q ss_pred HHHHHHhhcccccCCceEEEeecccCCC
Q 005713 229 FELFIELNATDEQCDFQAIYASGIQGKA 256 (681)
Q Consensus 229 ~~~~~~l~~~~~~~~~pvi~~SA~~G~~ 256 (681)
++.+...+ ..+++|++||++|+|
T Consensus 155 ~~~l~~~~-----~~~~v~~~Sa~~g~g 177 (179)
T TIGR03598 155 KKALKKDA-----DDPSVQLFSSLKKTG 177 (179)
T ss_pred HHHHhhcc-----CCCceEEEECCCCCC
Confidence 55554431 234799999999984
No 144
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.72 E-value=6.8e-17 Score=154.45 Aligned_cols=155 Identities=19% Similarity=0.178 Sum_probs=107.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|+.++|||||+++|+..........+ .+.+.......+......+.||||||+..|....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 66 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAAT--------------IGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLT 66 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCc--------------ccceEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 37999999999999999999876443221111 1333333333333344789999999999998888
Q ss_pred HHHHhhcceEEEEeeCCCCCchhhH-HHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCc
Q 005713 170 ERILNMVEGVLLVVDSVEGPMPQTR-FVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~qt~-~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~ 244 (681)
...++.+|++|+|+|+++....+.. .++..+.. .+.|+++|+||+|+.... ...++...+... ..+
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~--~~~~~~~~~~~~-------~~~ 137 (161)
T cd01863 67 SSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENRE--VTREEGLKFARK-------HNM 137 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccc--cCHHHHHHHHHH-------cCC
Confidence 8899999999999998864332222 23333332 468899999999987332 112223232221 256
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
+++++||++|. |+.++++.+++.
T Consensus 138 ~~~~~Sa~~~~----------gi~~~~~~~~~~ 160 (161)
T cd01863 138 LFIETSAKTRD----------GVQQAFEELVEK 160 (161)
T ss_pred EEEEEecCCCC----------CHHHHHHHHHHh
Confidence 89999999999 999999998765
No 145
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.72 E-value=5.6e-17 Score=154.66 Aligned_cols=152 Identities=20% Similarity=0.228 Sum_probs=107.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~ 170 (681)
+|+++|+.|+|||||+++++..... .. ..|+......+.+.+..+.||||||+..|.....
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~~------------------~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 61 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-TT------------------IPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWK 61 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-CC------------------CCCcCcceEEEEECCEEEEEEECCCChhhHHHHH
Confidence 5899999999999999999876521 11 1112222334566789999999999999999999
Q ss_pred HHHhhcceEEEEeeCCCC-CchhhHHHHHHHH----HcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCce
Q 005713 171 RILNMVEGVLLVVDSVEG-PMPQTRFVLKKAL----EFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (681)
Q Consensus 171 ~~l~~aD~~llVvDa~~g-~~~qt~~~l~~~~----~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~p 245 (681)
.++..+|++++|+|+++. .......++..+. ..+.|+++|+||+|+...+ ..+++.+.+.... .....++
T Consensus 62 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~---~~~~~~~~~~~~~--~~~~~~~ 136 (158)
T cd00878 62 HYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL---SVSELIEKLGLEK--ILGRRWH 136 (158)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc---CHHHHHHhhChhh--ccCCcEE
Confidence 999999999999999875 2333334444333 3478999999999987543 2223333221111 1123568
Q ss_pred EEEeecccCCCCCCCCCCCCCcchhHHHHHh
Q 005713 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (681)
Q Consensus 246 vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~ 276 (681)
++++||++|. |+.++++.|..
T Consensus 137 ~~~~Sa~~~~----------gv~~~~~~l~~ 157 (158)
T cd00878 137 IQPCSAVTGD----------GLDEGLDWLLQ 157 (158)
T ss_pred EEEeeCCCCC----------CHHHHHHHHhh
Confidence 9999999998 89999998865
No 146
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.72 E-value=7.7e-17 Score=155.39 Aligned_cols=153 Identities=20% Similarity=0.252 Sum_probs=100.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCe-EEEEEeCCCccc-----
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDT-KINIIDTPGHSD----- 164 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~-~i~iiDTPGh~d----- 164 (681)
+|+++|++|+|||||+++|.+....... ..+.|.......+.+++. .++||||||+.+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~----------------~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 65 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIAD----------------YPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG 65 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccC----------------CCccccCCcceEEEcCCCCeEEEEecCcccCccccc
Confidence 6999999999999999999864321111 013344444444566666 999999999742
Q ss_pred --hhHHHHHHHhhcceEEEEeeCCCC-Cc-hhhHHHHHHHHH-----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHh
Q 005713 165 --FGGEVERILNMVEGVLLVVDSVEG-PM-PQTRFVLKKALE-----FGHAVVVVVNKIDRPSARPDYVINSTFELFIEL 235 (681)
Q Consensus 165 --f~~e~~~~l~~aD~~llVvDa~~g-~~-~qt~~~l~~~~~-----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l 235 (681)
+...+.+.+..+|++++|+|+++. -. .+...+.+.+.. .+.|+++|+||+|+.... .....+...+...
T Consensus 66 ~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~~~ 143 (170)
T cd01898 66 KGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEE--ELFELLKELLKEL 143 (170)
T ss_pred CCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCch--hhHHHHHHHHhhC
Confidence 233344455679999999999876 22 222333333433 268999999999986533 1222222222211
Q ss_pred hcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 236 NATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 236 ~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
...+++++||++|. |+..+++.+.+.
T Consensus 144 ------~~~~~~~~Sa~~~~----------gi~~l~~~i~~~ 169 (170)
T cd01898 144 ------WGKPVFPISALTGE----------GLDELLRKLAEL 169 (170)
T ss_pred ------CCCCEEEEecCCCC----------CHHHHHHHHHhh
Confidence 23579999999998 999999998764
No 147
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.72 E-value=1.1e-16 Score=153.78 Aligned_cols=156 Identities=16% Similarity=0.171 Sum_probs=105.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|..|+|||||+++++..........+. +.++ .....+....+.++||||||+..|....
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI--------------EDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMR 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcc--------------hheE-EEEEEECCEEEEEEEEECCCcccchhHH
Confidence 479999999999999999998654332222221 1111 1222233334678899999999999999
Q ss_pred HHHHhhcceEEEEeeCCCCCch-hhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCc
Q 005713 170 ERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~ 244 (681)
..+++.+|++|+|+|.++.... ....++..+.. .++|+++|+||+|+...... ..++...+... ..+
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~-------~~~ 138 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVV-GKEQGQNLARQ-------WGC 138 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEE-cHHHHHHHHHH-------hCC
Confidence 9999999999999998764322 22333343332 36899999999998754311 11222222111 235
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
|++++||++|. |+.++|+++.+.+
T Consensus 139 ~~~~~Sa~~~~----------~v~~~~~~l~~~l 162 (164)
T cd04175 139 AFLETSAKAKI----------NVNEIFYDLVRQI 162 (164)
T ss_pred EEEEeeCCCCC----------CHHHHHHHHHHHh
Confidence 89999999999 9999999998754
No 148
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.72 E-value=8.9e-17 Score=152.11 Aligned_cols=147 Identities=21% Similarity=0.263 Sum_probs=108.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH-
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE- 168 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e- 168 (681)
.+|+++|++|+|||||+++|+......... ..++|.......+.+.+.++++|||||+.++...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~ 66 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSD---------------IAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEI 66 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccC---------------CCCCccceEEEEEEeCCEEEEEEECCCcCCCcchH
Confidence 369999999999999999998764322111 1255666556667778889999999999776532
Q ss_pred -------HHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 169 -------VERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 169 -------~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
....+..+|++++|+|+...........+.. ..+.|+++|+||+|+.+.... ....
T Consensus 67 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~---------------~~~~ 129 (157)
T cd04164 67 EKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL---------------LSLL 129 (157)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc---------------cccc
Confidence 3346778999999999997555544444443 457999999999998754311 0112
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
...|++++||+++. |+..|++.|.+.+
T Consensus 130 ~~~~~~~~Sa~~~~----------~v~~l~~~l~~~~ 156 (157)
T cd04164 130 AGKPIIAISAKTGE----------GLDELKEALLELA 156 (157)
T ss_pred CCCceEEEECCCCC----------CHHHHHHHHHHhh
Confidence 34689999999998 8999999987654
No 149
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.72 E-value=9.2e-17 Score=155.97 Aligned_cols=157 Identities=18% Similarity=0.218 Sum_probs=107.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~ 170 (681)
+|+++|..++|||||+++++...+......+. |..+......+......++||||||+.+|.....
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~--------------~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 67 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATI--------------GVDFEMERFEILGVPFSLQLWDTAGQERFKCIAS 67 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCce--------------eeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHH
Confidence 68999999999999999999876543222222 3333333333333346899999999999999999
Q ss_pred HHHhhcceEEEEeeCCCCC-chhhHHHHHHHHHc----CCEEEEEEeecCCCCCCccc-chhhHHHHHHHhhcccccCCc
Q 005713 171 RILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF----GHAVVVVVNKIDRPSARPDY-VINSTFELFIELNATDEQCDF 244 (681)
Q Consensus 171 ~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~~----gip~ivviNKiD~~~~~~~~-~~~ei~~~~~~l~~~~~~~~~ 244 (681)
.+++.+|++|+|+|+.+.. ......++..+.+. ..|+++|+||+|+...+... ...+......+ ...
T Consensus 68 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~-------~~~ 140 (170)
T cd04108 68 TYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAE-------MQA 140 (170)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHH-------cCC
Confidence 9999999999999997632 22233444444433 25689999999986443111 11222222222 234
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
+++++||++|. |+..+++.+...+
T Consensus 141 ~~~e~Sa~~g~----------~v~~lf~~l~~~~ 164 (170)
T cd04108 141 EYWSVSALSGE----------NVREFFFRVAALT 164 (170)
T ss_pred eEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 78999999999 8999999988765
No 150
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.72 E-value=9.8e-17 Score=154.46 Aligned_cols=153 Identities=18% Similarity=0.166 Sum_probs=102.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH--
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG-- 167 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~-- 167 (681)
++|+++|++|+|||||+++|+........ ..+.|.......+.+++.+++||||||+.+...
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 64 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAP----------------YPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEE 64 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCC----------------CCCcccceeEEEEccCceEEEEEECCCcCCccccC
Confidence 58999999999999999999876432110 113444445555667789999999999854211
Q ss_pred -------HHHHHHhhcceEEEEeeCCCCCc---hhhHHHHHHHHHc--CCEEEEEEeecCCCCCCcccchhhHHHHHHHh
Q 005713 168 -------EVERILNMVEGVLLVVDSVEGPM---PQTRFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIEL 235 (681)
Q Consensus 168 -------e~~~~l~~aD~~llVvDa~~g~~---~qt~~~l~~~~~~--gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l 235 (681)
........+|++|+|+|+++... .....++..+... +.|+++|+||+|+...+. ..+..... .
T Consensus 65 ~~~~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~---~~~~~~~~-~- 139 (168)
T cd01897 65 RNTIEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFED---LSEIEEEE-E- 139 (168)
T ss_pred CchHHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhh---HHHHHHhh-h-
Confidence 11111234689999999986432 2334555666555 799999999999865321 11121211 1
Q ss_pred hcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 236 NATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 236 ~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
...++++++||++|. |+.++++.+.+.+
T Consensus 140 -----~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 167 (168)
T cd01897 140 -----LEGEEVLKISTLTEE----------GVDEVKNKACELL 167 (168)
T ss_pred -----hccCceEEEEecccC----------CHHHHHHHHHHHh
Confidence 124679999999999 9999999988754
No 151
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.72 E-value=1.3e-16 Score=150.48 Aligned_cols=154 Identities=23% Similarity=0.279 Sum_probs=109.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|.+++|||||+++|+..........+. +.+..............+++|||||+..|....
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 66 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTI--------------GVDFKSKTIEIDGKTVKLQIWDTAGQERFRSIT 66 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCce--------------eeeeEEEEEEECCEEEEEEEEecCChHHHHHHH
Confidence 379999999999999999998765543322211 333333333333445789999999999999999
Q ss_pred HHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHHc---CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCce
Q 005713 170 ERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~~---gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~p 245 (681)
..+++.+|++|+|+|+.+... .....++..+... +.|+++++||+|+.... ....++++++... ..++
T Consensus 67 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~-------~~~~ 138 (159)
T cd00154 67 PSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQR-QVSTEEAQQFAKE-------NGLL 138 (159)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccc-cccHHHHHHHHHH-------cCCe
Confidence 999999999999999987332 2223445455554 48999999999986221 2223444443332 3568
Q ss_pred EEEeecccCCCCCCCCCCCCCcchhHHHHH
Q 005713 246 AIYASGIQGKAGLSPDNLADDLGPLFESIM 275 (681)
Q Consensus 246 vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~ 275 (681)
++++||++|. |+..+++.|.
T Consensus 139 ~~~~sa~~~~----------~i~~~~~~i~ 158 (159)
T cd00154 139 FFETSAKTGE----------NVEELFQSLA 158 (159)
T ss_pred EEEEecCCCC----------CHHHHHHHHh
Confidence 9999999998 8899988875
No 152
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.72 E-value=1.2e-16 Score=153.90 Aligned_cols=155 Identities=16% Similarity=0.141 Sum_probs=106.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|..|+|||||+++++...+......+. + ........+..+...++||||||+.+|....
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~--------------~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--------------E-DTYRQVISCSKNICTLQITDTTGSHQFPAMQ 66 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcc--------------h-heEEEEEEECCEEEEEEEEECCCCCcchHHH
Confidence 479999999999999999999765432211111 1 1112223344455789999999999999888
Q ss_pred HHHHhhcceEEEEeeCCCCCch-hhHHHHHHHHH------cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 170 ERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALE------FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~~------~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
..+++.+|++|+|+|.++.... ....++..+.+ .++|+++|+||+|+...+. -...+...... ..
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~~~-------~~ 138 (165)
T cd04140 67 RLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKRE-VSSNEGAACAT-------EW 138 (165)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCe-ecHHHHHHHHH-------Hh
Confidence 8899999999999998875432 23344444443 3589999999999865321 11111111111 12
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
.++++++||++|. |+.++|+.|++.
T Consensus 139 ~~~~~e~SA~~g~----------~v~~~f~~l~~~ 163 (165)
T cd04140 139 NCAFMETSAKTNH----------NVQELFQELLNL 163 (165)
T ss_pred CCcEEEeecCCCC----------CHHHHHHHHHhc
Confidence 3578999999999 999999998753
No 153
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=5.2e-17 Score=182.51 Aligned_cols=160 Identities=18% Similarity=0.259 Sum_probs=117.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc---
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD--- 164 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d--- 164 (681)
..++|+++|++++|||||+++|++........ ..|+|.+.....+.+++..+.||||||..+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~---------------~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~ 274 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDD---------------VAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVK 274 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccC---------------CCCccCCcceEEEEECCEEEEEEECCCcccccc
Confidence 46899999999999999999999764322111 226777666667788889999999999632
Q ss_pred ------hhHHH--HHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCc-ccchhhHHHHHHHh
Q 005713 165 ------FGGEV--ERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARP-DYVINSTFELFIEL 235 (681)
Q Consensus 165 ------f~~e~--~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~-~~~~~ei~~~~~~l 235 (681)
+...+ ..+++.+|++|+|+|++++...+...++..+...++|+|+|+||+|+..... .....++...+
T Consensus 275 ~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l--- 351 (472)
T PRK03003 275 QASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDREL--- 351 (472)
T ss_pred ccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHhc---
Confidence 22211 3457899999999999999999999889888888999999999999975321 11112222211
Q ss_pred hcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 236 NATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 236 ~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.. ....|++++||++|. |+..+|+.+.+.+
T Consensus 352 ~~---~~~~~~~~~SAk~g~----------gv~~lf~~i~~~~ 381 (472)
T PRK03003 352 AQ---VPWAPRVNISAKTGR----------AVDKLVPALETAL 381 (472)
T ss_pred cc---CCCCCEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 11 123589999999999 7888888877654
No 154
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.72 E-value=8.5e-17 Score=159.13 Aligned_cols=160 Identities=19% Similarity=0.211 Sum_probs=110.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCcccc-ccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRD-NQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~-~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
.+|+++|..|+|||||+++|+...+.... ..+. +.+.......+......++||||||+.+|...
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 66 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATV--------------GIDFRNKVVTVDGVKVKLQIWDTAGQERFRSV 66 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcc--------------cceeEEEEEEECCEEEEEEEEeCCCcHHHHHh
Confidence 37999999999999999999876543211 1111 22332223333334478999999999999888
Q ss_pred HHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHHc---CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCc
Q 005713 169 VERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~~---gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~ 244 (681)
...+++.+|++|+|+|+++... .....++..+.+. ++|+++|+||+|+...+. ...++...+... ..+
T Consensus 67 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~-~~~~~~~~l~~~-------~~~ 138 (191)
T cd04112 67 THAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERV-VKREDGERLAKE-------YGV 138 (191)
T ss_pred hHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccc-cCHHHHHHHHHH-------cCC
Confidence 8889999999999999887432 2223344444443 689999999999864321 112233333222 235
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
|++++||++|. |+..+|+.|.+.++..
T Consensus 139 ~~~e~Sa~~~~----------~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 139 PFMETSAKTGL----------NVELAFTAVAKELKHR 165 (191)
T ss_pred eEEEEeCCCCC----------CHHHHHHHHHHHHHHh
Confidence 89999999999 9999999999887544
No 155
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.71 E-value=6.8e-17 Score=153.55 Aligned_cols=148 Identities=22% Similarity=0.292 Sum_probs=107.3
Q ss_pred EEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH-----
Q 005713 94 IIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE----- 168 (681)
Q Consensus 94 IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e----- 168 (681)
++|+.|+|||||+++|.+....... ..|+|+......+.+++..++||||||+.+|...
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~ 64 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGN----------------WPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEK 64 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccC----------------CCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHH
Confidence 5899999999999999775321111 1377777777778888899999999999887642
Q ss_pred -HHHHHh--hcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCce
Q 005713 169 -VERILN--MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (681)
Q Consensus 169 -~~~~l~--~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~p 245 (681)
...++. .+|++|+|+|+.+. .+...++..+...++|+++|+||+|+.+.+. +..+...+... ..++
T Consensus 65 ~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~--~~~~~~~~~~~-------~~~~ 133 (158)
T cd01879 65 VARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRG--IKIDLDKLSEL-------LGVP 133 (158)
T ss_pred HHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhccccc--chhhHHHHHHh-------hCCC
Confidence 344554 89999999999873 3344555666778999999999999875431 11222222111 2357
Q ss_pred EEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 246 vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
++++||++|. |+..+++.+....
T Consensus 134 ~~~iSa~~~~----------~~~~l~~~l~~~~ 156 (158)
T cd01879 134 VVPTSARKGE----------GIDELKDAIAELA 156 (158)
T ss_pred eEEEEccCCC----------CHHHHHHHHHHHh
Confidence 9999999998 8899998887653
No 156
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.71 E-value=1.9e-16 Score=150.82 Aligned_cols=157 Identities=20% Similarity=0.200 Sum_probs=107.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.||+++|..++|||||+++|+..........+. +.+.......+......+++|||||+..|....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 66 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTT--------------QASFFQKTVNIGGKRIDLAIWDTAGQERYHALG 66 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcc--------------ceeEEEEEEEECCEEEEEEEEECCchHHHHHhh
Confidence 379999999999999999999765432221111 112222222233334578999999999999888
Q ss_pred HHHHhhcceEEEEeeCCCCCchhhH-HHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCce
Q 005713 170 ERILNMVEGVLLVVDSVEGPMPQTR-FVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~qt~-~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~p 245 (681)
..+++.+|++++|+|.+++...+.. .++..+.. .++|+++|+||+|+.... ....+++...... ..++
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~-~~~~~~~~~~~~~-------~~~~ 138 (162)
T cd04123 67 PIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQR-VVSKSEAEEYAKS-------VGAK 138 (162)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc-CCCHHHHHHHHHH-------cCCE
Confidence 8889999999999998875433222 23333332 368999999999987432 1112333333322 2457
Q ss_pred EEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 246 vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
++++||++|. |+..+++++.+.+
T Consensus 139 ~~~~s~~~~~----------gi~~~~~~l~~~~ 161 (162)
T cd04123 139 HFETSAKTGK----------GIEELFLSLAKRM 161 (162)
T ss_pred EEEEeCCCCC----------CHHHHHHHHHHHh
Confidence 8999999999 9999999987754
No 157
>PLN03110 Rab GTPase; Provisional
Probab=99.71 E-value=1.5e-16 Score=160.67 Aligned_cols=161 Identities=17% Similarity=0.233 Sum_probs=113.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
...+|+++|+.++|||||+++|+..........+. |++.......+......++||||||+..|..
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~--------------g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~ 76 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTI--------------GVEFATRTLQVEGKTVKAQIWDTAGQERYRA 76 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce--------------eEEEEEEEEEECCEEEEEEEEECCCcHHHHH
Confidence 56799999999999999999998765432222221 3343333344443446899999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCCchhh-HHHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMPQT-RFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~qt-~~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
....+++.+|++|+|+|.++...-+. ..++..+.. .++|+++|+||+|+...+ .+..+....+.. ...
T Consensus 77 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~~~~~~l~~------~~~ 148 (216)
T PLN03110 77 ITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLR--SVAEEDGQALAE------KEG 148 (216)
T ss_pred HHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccccc--CCCHHHHHHHHH------HcC
Confidence 99999999999999999886433222 344444444 368999999999986432 121111122211 134
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
++++++||++|. |+..+|+.++..+..
T Consensus 149 ~~~~e~SA~~g~----------~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 149 LSFLETSALEAT----------NVEKAFQTILLEIYH 175 (216)
T ss_pred CEEEEEeCCCCC----------CHHHHHHHHHHHHHH
Confidence 689999999999 899999999877643
No 158
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.71 E-value=1.7e-16 Score=158.18 Aligned_cols=160 Identities=18% Similarity=0.219 Sum_probs=110.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
...+|+++|..|+|||||+++|+...+......+. |+.+......+......+.||||||+..|..
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~ 70 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTI--------------GVDFKIRTVEINGERVKLQIWDTAGQERFRT 70 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccc--------------cceeEEEEEEECCEEEEEEEEeCCCchhHHH
Confidence 46899999999999999999998764432211111 3333222222223336789999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCCchh-hHHHHHHHHHc--CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCc
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMPQ-TRFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~q-t~~~l~~~~~~--gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~ 244 (681)
.+..+++.+|++|+|+|+++...-+ ...++..+... ..|++||+||+|+..... ....+...+... ..+
T Consensus 71 ~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~-~~~~~~~~~~~~-------~~~ 142 (199)
T cd04110 71 ITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKV-VETEDAYKFAGQ-------MGI 142 (199)
T ss_pred HHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccc-cCHHHHHHHHHH-------cCC
Confidence 9999999999999999998743222 23344444332 479999999999865321 112223332222 236
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
+++++||++|. |+..+|+.|...+.
T Consensus 143 ~~~e~Sa~~~~----------gi~~lf~~l~~~~~ 167 (199)
T cd04110 143 SLFETSAKENI----------NVEEMFNCITELVL 167 (199)
T ss_pred EEEEEECCCCc----------CHHHHHHHHHHHHH
Confidence 79999999999 99999999988764
No 159
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.71 E-value=1.3e-16 Score=154.50 Aligned_cols=154 Identities=21% Similarity=0.249 Sum_probs=106.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
..+|+++|+.++|||||+++|....... ...++ |.++ ..+.+.+..++||||||+..|...
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~--------------g~~~----~~~~~~~~~~~l~Dt~G~~~~~~~ 69 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTV--------------GFNV----ETVTYKNVKFNVWDVGGQDKIRPL 69 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCc--------------ccce----EEEEECCEEEEEEECCCCHHHHHH
Confidence 4789999999999999999997643321 11111 2222 234457789999999999999988
Q ss_pred HHHHHhhcceEEEEeeCCCCC-chhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 169 VERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
+..+++.+|++|+|+|+++.. ......+|..... .+.|+++|+||+|+.... ..+++.+.+. +.. .....
T Consensus 70 ~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~-~~~-~~~~~ 144 (168)
T cd04149 70 WRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM---KPHEIQEKLG-LTR-IRDRN 144 (168)
T ss_pred HHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC---CHHHHHHHcC-CCc-cCCCc
Confidence 889999999999999988742 3333444444432 358999999999986431 1233433321 110 11123
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHh
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~ 276 (681)
++++++||++|. |+.++|++|.+
T Consensus 145 ~~~~~~SAk~g~----------gv~~~~~~l~~ 167 (168)
T cd04149 145 WYVQPSCATSGD----------GLYEGLTWLSS 167 (168)
T ss_pred EEEEEeeCCCCC----------ChHHHHHHHhc
Confidence 578999999999 89999998864
No 160
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.71 E-value=1.8e-16 Score=153.64 Aligned_cols=161 Identities=17% Similarity=0.183 Sum_probs=105.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH-
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG- 167 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~- 167 (681)
..+|+++|++|+|||||+++++..........+. +.........+....+.++||||||+.+|..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 67 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATI--------------GVDFRERTVEIDGERIKVQLWDTAGQERFRKS 67 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccce--------------eEEEEEEEEEECCeEEEEEEEeCCChHHHHHh
Confidence 4789999999999999999998654321111111 2222223333333447899999999999974
Q ss_pred HHHHHHhhcceEEEEeeCCCCCchhhHH-HHHHHHHc----CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMPQTRF-VLKKALEF----GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~qt~~-~l~~~~~~----gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
....+++.+|++++|+|+++....+... ++..+... ++|+++|+||+|+...+. ...++...+.. ..
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~~-------~~ 139 (170)
T cd04115 68 MVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQ-VPTDLAQRFAD-------AH 139 (170)
T ss_pred hHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcC-CCHHHHHHHHH-------Hc
Confidence 5677889999999999998755444433 33344432 589999999999865431 11122222221 12
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.++++++||+++.+. .++.++|..+++.+
T Consensus 140 ~~~~~e~Sa~~~~~~-------~~i~~~f~~l~~~~ 168 (170)
T cd04115 140 SMPLFETSAKDPSEN-------DHVEAIFMTLAHKL 168 (170)
T ss_pred CCcEEEEeccCCcCC-------CCHHHHHHHHHHHh
Confidence 367999999994311 17888888887655
No 161
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.71 E-value=1.2e-16 Score=154.81 Aligned_cols=157 Identities=18% Similarity=0.160 Sum_probs=108.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~ 170 (681)
+|+++|..++|||||+++|....... .. .|+......+.+.+..+++|||||+.+|...+.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~------------------~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~ 61 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PI------------------PTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWK 61 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cC------------------CcCceeEEEEEECCEEEEEEECCCChhcchHHH
Confidence 58999999999999999998753321 11 111122234567789999999999999999999
Q ss_pred HHHhhcceEEEEeeCCCCC-chhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCce
Q 005713 171 RILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (681)
Q Consensus 171 ~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~p 245 (681)
.+++.+|++++|+|+++.. ......++..+.. .+.|+++|+||+|+.... ..+++...+ .+........++
T Consensus 62 ~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~-~~~~~~~~~~~~ 137 (169)
T cd04158 62 HYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGAL---SVEEMTELL-SLHKLCCGRSWY 137 (169)
T ss_pred HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCC---CHHHHHHHh-CCccccCCCcEE
Confidence 9999999999999987632 2333444444432 247999999999986431 223333332 111100111346
Q ss_pred EEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 246 vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
++++||++|. |+.++|++|.+.++.
T Consensus 138 ~~~~Sa~~g~----------gv~~~f~~l~~~~~~ 162 (169)
T cd04158 138 IQGCDARSGM----------GLYEGLDWLSRQLVA 162 (169)
T ss_pred EEeCcCCCCC----------CHHHHHHHHHHHHhh
Confidence 8899999999 999999999887643
No 162
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.71 E-value=2.2e-16 Score=151.51 Aligned_cols=152 Identities=18% Similarity=0.267 Sum_probs=104.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~ 170 (681)
+|+++|..++|||||+++|....... ...+. |..+ ..+.+....+.||||||+..|...+.
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~--------------g~~~----~~~~~~~~~~~l~D~~G~~~~~~~~~ 62 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTI--------------GFNV----ETVEYKNISFTVWDVGGQDKIRPLWR 62 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc-cCCCC--------------Ccce----EEEEECCEEEEEEECCCCHhHHHHHH
Confidence 69999999999999999997543321 11111 2222 23456788999999999999999899
Q ss_pred HHHhhcceEEEEeeCCCCC-chhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCce
Q 005713 171 RILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (681)
Q Consensus 171 ~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~p 245 (681)
.+++.+|++|+|+|+++.. ..+...+|..+.. .+.|+++++||+|+.+... .+++...+ .+.. .....+.
T Consensus 63 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~-~~~~-~~~~~~~ 137 (159)
T cd04150 63 HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS---AAEVTDKL-GLHS-LRNRNWY 137 (159)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC---HHHHHHHh-Cccc-cCCCCEE
Confidence 9999999999999987632 2333444444432 2589999999999864321 22332222 1111 0122456
Q ss_pred EEEeecccCCCCCCCCCCCCCcchhHHHHHh
Q 005713 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (681)
Q Consensus 246 vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~ 276 (681)
++++||++|. |+.++|++|.+
T Consensus 138 ~~~~Sak~g~----------gv~~~~~~l~~ 158 (159)
T cd04150 138 IQATCATSGD----------GLYEGLDWLSN 158 (159)
T ss_pred EEEeeCCCCC----------CHHHHHHHHhc
Confidence 8899999999 89999998864
No 163
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.71 E-value=1.9e-16 Score=159.80 Aligned_cols=158 Identities=19% Similarity=0.203 Sum_probs=108.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEee-CCeEEEEEeCCCccchhHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY-NDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~i~iiDTPGh~df~~e 168 (681)
.+|+++|..++|||||+++|++..+......+. |..+......+.. ....++||||||+..|...
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~--------------~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l 66 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTI--------------GLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKM 66 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCce--------------eEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHH
Confidence 379999999999999999998765432222221 2222222222221 2478999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCC-chhhHHHHHHHHHc------CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 169 VERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF------GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~~------gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
...+++.+|++|+|+|+++.. +.....++..+.+. +.|+++|+||+|+.+.+. ...++...+...
T Consensus 67 ~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~-v~~~~~~~~~~~------- 138 (215)
T cd04109 67 LDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT-VKDDKHARFAQA------- 138 (215)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccc-cCHHHHHHHHHH-------
Confidence 999999999999999988642 22333344444432 357899999999864331 122222222222
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
..++++++||++|. |+..+|+.+.+.+.
T Consensus 139 ~~~~~~~iSAktg~----------gv~~lf~~l~~~l~ 166 (215)
T cd04109 139 NGMESCLVSAKTGD----------RVNLLFQQLAAELL 166 (215)
T ss_pred cCCEEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 23578999999999 99999999988764
No 164
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.71 E-value=1.1e-16 Score=156.44 Aligned_cols=159 Identities=14% Similarity=0.104 Sum_probs=110.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|+.++|||||+.+++...+......++ |.+. .....+....++++||||+|+++|....
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti--------------~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~ 66 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV--------------FDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLR 66 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcc--------------eeee-EEEEEECCEEEEEEEEECCCCccccccc
Confidence 579999999999999999999866543322222 2222 1222233344789999999999999988
Q ss_pred HHHHhhcceEEEEeeCCCCCchhh--HHHHHHHHH--cCCEEEEEEeecCCCCCCc---------ccchhhHHHHHHHhh
Q 005713 170 ERILNMVEGVLLVVDSVEGPMPQT--RFVLKKALE--FGHAVVVVVNKIDRPSARP---------DYVINSTFELFIELN 236 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~qt--~~~l~~~~~--~gip~ivviNKiD~~~~~~---------~~~~~ei~~~~~~l~ 236 (681)
..+++.+|++|||+|.++...-+. ..|+..+.. .++|+++|+||+|+.+.+. .-..++...+...
T Consensus 67 ~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~-- 144 (176)
T cd04133 67 PLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQ-- 144 (176)
T ss_pred hhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHH--
Confidence 899999999999999886433332 245555543 3689999999999864321 0112222222222
Q ss_pred cccccCCc-eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 237 ATDEQCDF-QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 237 ~~~~~~~~-pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
... +++++||++|. |+.++|+.+.+.+..
T Consensus 145 -----~~~~~~~E~SAk~~~----------nV~~~F~~~~~~~~~ 174 (176)
T cd04133 145 -----IGAAAYIECSSKTQQ----------NVKAVFDAAIKVVLQ 174 (176)
T ss_pred -----cCCCEEEECCCCccc----------CHHHHHHHHHHHHhc
Confidence 223 68999999999 899999999986643
No 165
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.71 E-value=7.5e-17 Score=158.95 Aligned_cols=160 Identities=17% Similarity=0.216 Sum_probs=111.2
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
.+..+|+++|+.|+|||||+++|....... .. .|+......+.+.+..+.+|||||+.+|.
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~-~~------------------~T~~~~~~~i~~~~~~~~l~D~~G~~~~~ 77 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQ-HV------------------PTLHPTSEELTIGNIKFKTFDLGGHEQAR 77 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcc-cC------------------CccCcceEEEEECCEEEEEEECCCCHHHH
Confidence 456889999999999999999998653311 10 11222234466678899999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCC-chhhHHHHHHHH----HcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhc----
Q 005713 167 GEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKAL----EFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNA---- 237 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~----~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~---- 237 (681)
..+..+++.+|++++|+|+.+.. .......+.... ..+.|+++|+||+|+..+. ..+++++.+.....
T Consensus 78 ~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~ 154 (190)
T cd00879 78 RLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAV---SEEELRQALGLYGTTTGK 154 (190)
T ss_pred HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCc---CHHHHHHHhCcccccccc
Confidence 88889999999999999988642 222333443333 2468999999999986432 22344444321110
Q ss_pred -----ccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 238 -----TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 238 -----~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
......++++++||++|. |+.++|+.|.+++
T Consensus 155 ~~~~~~~~~~~~~~~~~Sa~~~~----------gv~e~~~~l~~~~ 190 (190)
T cd00879 155 GVSLKVSGIRPIEVFMCSVVKRQ----------GYGEAFRWLSQYL 190 (190)
T ss_pred cccccccCceeEEEEEeEecCCC----------ChHHHHHHHHhhC
Confidence 011234679999999999 9999999987653
No 166
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.71 E-value=1.5e-16 Score=156.32 Aligned_cols=157 Identities=17% Similarity=0.217 Sum_probs=107.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~ 170 (681)
+|+++|..++|||||+.+++...+......+. |..+..+...+......+.||||+|+..|...+.
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~--------------g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~ 67 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTL--------------GVNFMEKTISIRGTEITFSIWDLGGQREFINMLP 67 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCcc--------------ceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhH
Confidence 79999999999999999998875543222222 4344333333333347899999999999999889
Q ss_pred HHHhhcceEEEEeeCCCCCch-hhHHHHHHHHHc---CCEEEEEEeecCCCCCCc----ccchhhHHHHHHHhhcccccC
Q 005713 171 RILNMVEGVLLVVDSVEGPMP-QTRFVLKKALEF---GHAVVVVVNKIDRPSARP----DYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 171 ~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~~~---gip~ivviNKiD~~~~~~----~~~~~ei~~~~~~l~~~~~~~ 242 (681)
.+++.+|++++|+|.++.... ....++..+... ..| |+|+||+|+..... ..+.++..++. ...
T Consensus 68 ~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a-------~~~ 139 (182)
T cd04128 68 LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYA-------KAM 139 (182)
T ss_pred HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHH-------HHc
Confidence 999999999999998874322 222444444442 356 68899999863211 11112222221 122
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
..+++++||++|. |+.++|+.+.+.+.
T Consensus 140 ~~~~~e~SAk~g~----------~v~~lf~~l~~~l~ 166 (182)
T cd04128 140 KAPLIFCSTSHSI----------NVQKIFKIVLAKAF 166 (182)
T ss_pred CCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 4679999999999 99999999987663
No 167
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.70 E-value=1.7e-16 Score=153.17 Aligned_cols=159 Identities=20% Similarity=0.281 Sum_probs=107.1
Q ss_pred EEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHHH
Q 005713 92 IAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVER 171 (681)
Q Consensus 92 V~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~~ 171 (681)
|+++|..|+|||||+++|+..........+. |. ....+.+++.++.||||||+.+|...+..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~--------------g~----~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~ 63 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTT--------------GF----NSVAIPTQDAIMELLEIGGSQNLRKYWKR 63 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccC--------------Cc----ceEEEeeCCeEEEEEECCCCcchhHHHHH
Confidence 7899999999999999998764432111111 21 12346677899999999999999999999
Q ss_pred HHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH--cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceEEE
Q 005713 172 ILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE--FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIY 248 (681)
Q Consensus 172 ~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~--~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~ 248 (681)
+++.+|++|+|+|+++... ...+.++..+.. .++|+++|+||+|+..++ ...++.+.+. +........+++++
T Consensus 64 ~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~-~~~~~~~~~~~~~~ 139 (164)
T cd04162 64 YLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAAR---SVQEIHKELE-LEPIARGRRWILQG 139 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCC---CHHHHHHHhC-ChhhcCCCceEEEE
Confidence 9999999999999887432 233444444432 479999999999987654 2223322221 11111223578899
Q ss_pred eecccCCCCCCCCCCCCCcchhHHHHHh
Q 005713 249 ASGIQGKAGLSPDNLADDLGPLFESIMR 276 (681)
Q Consensus 249 ~SA~~G~~~~~~~~~~~gi~~Ll~~I~~ 276 (681)
+||++...-.. ..|+.++|+.+++
T Consensus 140 ~Sa~~~~s~~~----~~~v~~~~~~~~~ 163 (164)
T cd04162 140 TSLDDDGSPSR----MEAVKDLLSQLIN 163 (164)
T ss_pred eeecCCCChhH----HHHHHHHHHHHhc
Confidence 99998321111 1188888888764
No 168
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.70 E-value=1.9e-16 Score=154.10 Aligned_cols=157 Identities=17% Similarity=0.185 Sum_probs=107.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|..++|||||+.+++...+......+. +... .....+......++||||||..+|...+
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~--------------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~ 67 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTI--------------EDAY-KQQARIDNEPALLDILDTAGQAEFTAMR 67 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcc--------------cceE-EEEEEECCEEEEEEEEeCCCchhhHHHh
Confidence 579999999999999999998765432222221 1111 1112223334678999999999999999
Q ss_pred HHHHhhcceEEEEeeCCCCCchhhH-HHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCc
Q 005713 170 ERILNMVEGVLLVVDSVEGPMPQTR-FVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~qt~-~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~ 244 (681)
..+++.+|++|+|+|.++...-+.. .++..+.. .++|+++|+||+|+...+. -..++...+.. ...+
T Consensus 68 ~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~-v~~~~~~~~a~-------~~~~ 139 (172)
T cd04141 68 DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ-VTTEEGRNLAR-------EFNC 139 (172)
T ss_pred HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc-cCHHHHHHHHH-------HhCC
Confidence 9999999999999999875443333 23333332 3689999999999865431 11122222221 1246
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
+++++||++|. |++++|+.+++.+-
T Consensus 140 ~~~e~Sa~~~~----------~v~~~f~~l~~~~~ 164 (172)
T cd04141 140 PFFETSAALRH----------YIDDAFHGLVREIR 164 (172)
T ss_pred EEEEEecCCCC----------CHHHHHHHHHHHHH
Confidence 89999999999 89999999887653
No 169
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=3.1e-16 Score=174.94 Aligned_cols=154 Identities=23% Similarity=0.362 Sum_probs=117.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc-----
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD----- 164 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d----- 164 (681)
++|+++|++|+|||||+++|++........ ..|+|.+.....+.+.+..++||||||+.+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~---------------~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~ 66 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVAD---------------TPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGF 66 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCC---------------CCCCcccceEEEEEECCcEEEEEECCCCCCcchhH
Confidence 579999999999999999998754322111 126777777777888899999999999987
Q ss_pred ---hhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 165 ---FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 165 ---f~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
+...+..++..+|++|+|+|+.++........+..+.+.++|+++|+||+|..+.. ..+.+. ..++..
T Consensus 67 ~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~-----~~~~~~-~~lg~~--- 137 (435)
T PRK00093 67 EKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEE-----ADAYEF-YSLGLG--- 137 (435)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccch-----hhHHHH-HhcCCC---
Confidence 33345567889999999999999988888888888888899999999999965321 122222 222221
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
.++++||++|. |+..+++.+....+.
T Consensus 138 ---~~~~iSa~~g~----------gv~~l~~~I~~~~~~ 163 (435)
T PRK00093 138 ---EPYPISAEHGR----------GIGDLLDAILEELPE 163 (435)
T ss_pred ---CCEEEEeeCCC----------CHHHHHHHHHhhCCc
Confidence 27899999999 899999999885544
No 170
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.70 E-value=1.8e-16 Score=153.32 Aligned_cols=159 Identities=22% Similarity=0.321 Sum_probs=107.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~ 170 (681)
+|+++|..++|||||+++|... .......+. |.+ ...+.+++..+++|||||+..|...+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~--------------g~~----~~~~~~~~~~~~i~D~~G~~~~~~~~~ 61 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTV--------------GFT----PTKLRLDKYEVCIFDLGGGANFRGIWV 61 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcc--------------cce----EEEEEECCEEEEEEECCCcHHHHHHHH
Confidence 4899999999999999999864 211111111 322 334667889999999999999999999
Q ss_pred HHHhhcceEEEEeeCCCCC-chhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHH--HHhhcccccCC
Q 005713 171 RILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELF--IELNATDEQCD 243 (681)
Q Consensus 171 ~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~--~~l~~~~~~~~ 243 (681)
.+++.+|++|+|+|+++.. ......++..+.. .++|+++|+||+|+.+++.. .++.+.+ ..+ +......
T Consensus 62 ~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~---~~i~~~~~l~~~-~~~~~~~ 137 (167)
T cd04161 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLG---ADVIEYLSLEKL-VNENKSL 137 (167)
T ss_pred HHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCH---HHHHHhcCcccc-cCCCCce
Confidence 9999999999999988743 3334445555443 36899999999999766421 2222211 111 1112234
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHh
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~ 276 (681)
++++++||++|.+- ....|+.+.|++|..
T Consensus 138 ~~~~~~Sa~~g~~~----~~~~g~~~~~~wl~~ 166 (167)
T cd04161 138 CHIEPCSAIEGLGK----KIDPSIVEGLRWLLA 166 (167)
T ss_pred EEEEEeEceeCCCC----ccccCHHHHHHHHhc
Confidence 67899999998421 011278888888753
No 171
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.70 E-value=2.4e-16 Score=155.82 Aligned_cols=157 Identities=15% Similarity=0.227 Sum_probs=108.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccc-cccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFR-DNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~-~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
+|+++|.+++|||||+++|+...+... ...+. |.++......+......++||||||+.+|....
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~ 67 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTI--------------GAAFVAKRMVVGERVVTLGIWDTAGSERYEAMS 67 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCcCcccce--------------eeEEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 799999999999999999997655321 11111 333333333344334678899999999998888
Q ss_pred HHHHhhcceEEEEeeCCCCCch-hhHHHHHHHHHc--CCEEEEEEeecCCCCCCc--ccc-hhhHHHHHHHhhcccccCC
Q 005713 170 ERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALEF--GHAVVVVVNKIDRPSARP--DYV-INSTFELFIELNATDEQCD 243 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~~~--gip~ivviNKiD~~~~~~--~~~-~~ei~~~~~~l~~~~~~~~ 243 (681)
..+++.+|++|+|+|.++...- ....++..+... +.|+++|+||+|+..... ..+ ..++..+... ..
T Consensus 68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~-------~~ 140 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADE-------IK 140 (193)
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHH-------cC
Confidence 8889999999999998774322 223455555444 689999999999864321 111 1223332221 23
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.+++++||++|. |+..|++.+.+.+
T Consensus 141 ~~~~~~Sa~~~~----------gv~~l~~~i~~~~ 165 (193)
T cd04118 141 AQHFETSSKTGQ----------NVDELFQKVAEDF 165 (193)
T ss_pred CeEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 578999999999 9999999998766
No 172
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.70 E-value=1.3e-16 Score=158.70 Aligned_cols=158 Identities=16% Similarity=0.159 Sum_probs=106.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCccchhHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDFGGE 168 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~e 168 (681)
+|+++|+.|+|||||+++|+..........+. .......+.+.+ ..++||||||+.+|...
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~-----------------~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~ 63 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTV-----------------EEMHRKEYEVGGVSLTLDILDTSGSYSFPAM 63 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCch-----------------hhheeEEEEECCEEEEEEEEECCCchhhhHH
Confidence 58999999999999999998765432111111 011112333444 68899999999999988
Q ss_pred HHHHHhhcceEEEEeeCCCCCchh-hHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 169 VERILNMVEGVLLVVDSVEGPMPQ-TRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~~~q-t~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
...++..+|++|+|+|+++....+ ...++..+.. .++|+++|+||+|+..........+....+. ....
T Consensus 64 ~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~------~~~~ 137 (198)
T cd04147 64 RKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE------LDWN 137 (198)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH------hhcC
Confidence 888999999999999998743222 2222223322 4799999999999865311111111111111 1123
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
.+++++||++|. |+.++++.+.+.+..+
T Consensus 138 ~~~~~~Sa~~g~----------gv~~l~~~l~~~~~~~ 165 (198)
T cd04147 138 CGFVETSAKDNE----------NVLEVFKELLRQANLP 165 (198)
T ss_pred CcEEEecCCCCC----------CHHHHHHHHHHHhhcc
Confidence 578999999999 9999999999877543
No 173
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.70 E-value=1.8e-16 Score=156.63 Aligned_cols=156 Identities=16% Similarity=0.183 Sum_probs=105.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~ 170 (681)
+|+++|..|+|||||+++|+...+......+. +... .....+......++||||||+.+|.....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~--------------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 65 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTI--------------EDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRD 65 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCch--------------HhhE-EEEEEECCEEEEEEEEECCCchhhHHHHH
Confidence 48999999999999999998765533222221 1111 11112222335689999999999999999
Q ss_pred HHHhhcceEEEEeeCCCCCch-hhHHHHHHHHH------cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 171 RILNMVEGVLLVVDSVEGPMP-QTRFVLKKALE------FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 171 ~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~~------~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
.+++.+|++|+|+|.++.... ....++..+.. .+.|+++|+||+|+...+. -...+...+.. ...
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~-v~~~~~~~~~~-------~~~ 137 (190)
T cd04144 66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYERE-VSTEEGAALAR-------RLG 137 (190)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCc-cCHHHHHHHHH-------HhC
Confidence 999999999999998774332 22334343332 3589999999999864321 11112222211 123
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
++++++||++|. |+.++|+.+++.+-
T Consensus 138 ~~~~e~SAk~~~----------~v~~l~~~l~~~l~ 163 (190)
T cd04144 138 CEFIEASAKTNV----------NVERAFYTLVRALR 163 (190)
T ss_pred CEEEEecCCCCC----------CHHHHHHHHHHHHH
Confidence 579999999999 88999999987654
No 174
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.70 E-value=3.3e-16 Score=152.55 Aligned_cols=154 Identities=23% Similarity=0.240 Sum_probs=107.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
..++|+++|+.++|||||+++|+...... .. .|+......+.+++..+.+|||||+..|..
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~------------------~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 74 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TS------------------PTIGSNVEEIVYKNIRFLMWDIGGQESLRS 74 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cC------------------CccccceEEEEECCeEEEEEECCCCHHHHH
Confidence 35789999999999999999998654321 11 122222345667789999999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcc-ccc
Q 005713 168 EVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT-DEQ 241 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~-~~~ 241 (681)
.+..+++.+|++|+|+|+++... ......+..+.. .++|+++++||+|+.+.. ..+++... ++.. ...
T Consensus 75 ~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~---~~~~i~~~---l~~~~~~~ 148 (174)
T cd04153 75 SWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM---TPAEISES---LGLTSIRD 148 (174)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC---CHHHHHHH---hCcccccC
Confidence 99999999999999999987532 222233333322 258999999999986531 11222222 2211 112
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHh
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~ 276 (681)
..++++++||++|. |+.++++.|.+
T Consensus 149 ~~~~~~~~SA~~g~----------gi~e~~~~l~~ 173 (174)
T cd04153 149 HTWHIQGCCALTGE----------GLPEGLDWIAS 173 (174)
T ss_pred CceEEEecccCCCC----------CHHHHHHHHhc
Confidence 35689999999999 89999988754
No 175
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.70 E-value=3.4e-16 Score=153.66 Aligned_cols=156 Identities=19% Similarity=0.247 Sum_probs=108.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
+..+|+++|..++|||||+.+|....... ...++ |.++ ..+.+++..++||||||+..|..
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~--------------g~~~----~~~~~~~~~~~i~D~~Gq~~~~~ 76 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTI--------------GFNV----ETVEYKNISFTVWDVGGQDKIRP 76 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCc--------------ceeE----EEEEECCEEEEEEECCCCHHHHH
Confidence 45789999999999999999997543321 11111 3322 34567889999999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCC-chhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccc-cc
Q 005713 168 EVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD-EQ 241 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~-~~ 241 (681)
.+..+++.+|++|+|+|+++.. .......+..... .++|++||+||+|+..+. ..+++.+. ++... ..
T Consensus 77 ~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~---l~l~~~~~ 150 (181)
T PLN00223 77 LWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDK---LGLHSLRQ 150 (181)
T ss_pred HHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC---CHHHHHHH---hCccccCC
Confidence 9999999999999999998742 2222333333322 368999999999987543 12333332 22211 11
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
..+.++++||++|. |+.++|++|.+.+
T Consensus 151 ~~~~~~~~Sa~~g~----------gv~e~~~~l~~~~ 177 (181)
T PLN00223 151 RHWYIQSTCATSGE----------GLYEGLDWLSNNI 177 (181)
T ss_pred CceEEEeccCCCCC----------CHHHHHHHHHHHH
Confidence 23456789999999 8999999998765
No 176
>PLN03108 Rab family protein; Provisional
Probab=99.70 E-value=3.2e-16 Score=157.56 Aligned_cols=160 Identities=19% Similarity=0.181 Sum_probs=111.1
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
+...+|+|+|+.++|||||+++|+...+......++ |.+.......+......++||||||+.+|.
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti--------------~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~ 69 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI--------------GVEFGARMITIDNKPIKLQIWDTAGQESFR 69 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc--------------cceEEEEEEEECCEEEEEEEEeCCCcHHHH
Confidence 456899999999999999999998765433222221 333333333333334678999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchhh-HHHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQT-RFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~qt-~~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
.....+++.+|++|+|+|+++....+. ..++..+.. .++|+++|+||+|+...+. ...++...+... .
T Consensus 70 ~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~-~~~~~~~~~~~~-------~ 141 (210)
T PLN03108 70 SITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRA-VSTEEGEQFAKE-------H 141 (210)
T ss_pred HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccC-CCHHHHHHHHHH-------c
Confidence 988999999999999999987433222 233333332 3689999999999865431 122333333322 2
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.++++++||++|. |+.++|+.+++.+
T Consensus 142 ~~~~~e~Sa~~~~----------~v~e~f~~l~~~~ 167 (210)
T PLN03108 142 GLIFMEASAKTAQ----------NVEEAFIKTAAKI 167 (210)
T ss_pred CCEEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 4589999999998 8888888887665
No 177
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.70 E-value=2.8e-16 Score=150.58 Aligned_cols=156 Identities=16% Similarity=0.218 Sum_probs=105.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|.+|+|||||+++++..........+. + ........+......++||||||+..|...+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~--------------~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI--------------E-DFYRKEIEVDSSPSVLEILDTAGTEQFASMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCch--------------h-heEEEEEEECCEEEEEEEEECCCcccccchH
Confidence 479999999999999999998765432221111 0 1112222333334578899999999999999
Q ss_pred HHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCc
Q 005713 170 ERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~ 244 (681)
..+++.+|++|+|+|.++... .....++..+.. .++|+++|+||+|+..... ....+...+.. ...+
T Consensus 67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~ 138 (163)
T cd04176 67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESERE-VSSAEGRALAE-------EWGC 138 (163)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCc-cCHHHHHHHHH-------HhCC
Confidence 999999999999999887432 223344444433 3689999999999864321 11111111111 1235
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
|++++||++|. |+.++++.+.+.+
T Consensus 139 ~~~~~Sa~~~~----------~v~~l~~~l~~~l 162 (163)
T cd04176 139 PFMETSAKSKT----------MVNELFAEIVRQM 162 (163)
T ss_pred EEEEecCCCCC----------CHHHHHHHHHHhc
Confidence 79999999999 8999999988754
No 178
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.70 E-value=4.3e-16 Score=151.93 Aligned_cols=156 Identities=19% Similarity=0.252 Sum_probs=109.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
+..+|+++|..++|||||+++|...... ....+. |..+ ..+.+++..+.||||||+..|..
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~--------------~~~~----~~~~~~~~~l~l~D~~G~~~~~~ 72 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTI--------------GFNV----ETVTYKNISFTVWDVGGQDKIRP 72 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCcc--------------ccce----EEEEECCEEEEEEECCCChhhHH
Confidence 3578999999999999999999754331 111111 2222 23456788999999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCC-chhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccc-cc
Q 005713 168 EVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD-EQ 241 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~-~~ 241 (681)
.+..+++.+|++|+|+|+++.. .....+++..+.. .++|++||+||+|+.++.. ..++.+.+ +... ..
T Consensus 73 ~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~~~---~~~~~~~ 146 (175)
T smart00177 73 LWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMK---AAEITEKL---GLHSIRD 146 (175)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCC---HHHHHHHh---CccccCC
Confidence 9999999999999999988632 3344555555432 2589999999999875431 12333322 2111 11
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
..+.++++||++|. |+.++|++|.+.+
T Consensus 147 ~~~~~~~~Sa~~g~----------gv~e~~~~l~~~~ 173 (175)
T smart00177 147 RNWYIQPTCATSGD----------GLYEGLTWLSNNL 173 (175)
T ss_pred CcEEEEEeeCCCCC----------CHHHHHHHHHHHh
Confidence 23457789999999 9999999988754
No 179
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.70 E-value=2.2e-16 Score=159.87 Aligned_cols=159 Identities=15% Similarity=0.148 Sum_probs=111.7
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
....+|+++|..|+|||||+++++...+......+. |+++.............+.||||||+.+|.
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~ti--------------g~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 76 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI--------------GVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCcc--------------ceeEEEEEEEECCeEEEEEEEECCCchhhh
Confidence 346789999999999999999998765432222222 444444333333445799999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchhh-HHHHHHHHH--cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQT-RFVLKKALE--FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~qt-~~~l~~~~~--~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
..+..+++.+|++|+|+|.++...-+. ..|+..+.+ .++|+++|+||+|+...... .+++ .+.. ...
T Consensus 77 ~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~--~~~~-~~~~-------~~~ 146 (219)
T PLN03071 77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQV-TFHR-------KKN 146 (219)
T ss_pred hhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCC--HHHH-HHHH-------hcC
Confidence 888889999999999999887543332 233333332 36899999999998642211 1222 1111 124
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
++++++||++|. |+..+|+.|++.+.
T Consensus 147 ~~~~e~SAk~~~----------~i~~~f~~l~~~~~ 172 (219)
T PLN03071 147 LQYYEISAKSNY----------NFEKPFLYLARKLA 172 (219)
T ss_pred CEEEEcCCCCCC----------CHHHHHHHHHHHHH
Confidence 679999999999 89999999987663
No 180
>PLN03118 Rab family protein; Provisional
Probab=99.69 E-value=4.2e-16 Score=156.68 Aligned_cols=159 Identities=21% Similarity=0.180 Sum_probs=108.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
...+|+|+|+.++|||||+++|+....... ..+ -|.+.......+....+.+.||||||+.+|..
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~-~~t--------------~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 77 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDL-APT--------------IGVDFKIKQLTVGGKRLKLTIWDTAGQERFRT 77 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCc-CCC--------------ceeEEEEEEEEECCEEEEEEEEECCCchhhHH
Confidence 457899999999999999999987543211 111 13333333333333346889999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCCchhhH-HHHHH-HHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMPQTR-FVLKK-ALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~qt~-~~l~~-~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
....+++.+|++|+|+|+++....+.. ..|.. +.. .+.|+++|+||+|+...+. ...++...+..+
T Consensus 78 ~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~-i~~~~~~~~~~~------- 149 (211)
T PLN03118 78 LTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERD-VSREEGMALAKE------- 149 (211)
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc-cCHHHHHHHHHH-------
Confidence 999999999999999999874332222 22322 221 3578999999999865431 112222222221
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
..++++++||++|. |+..+|+.|.+.+.
T Consensus 150 ~~~~~~e~SAk~~~----------~v~~l~~~l~~~~~ 177 (211)
T PLN03118 150 HGCLFLECSAKTRE----------NVEQCFEELALKIM 177 (211)
T ss_pred cCCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 23579999999999 89999999998764
No 181
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.69 E-value=2.3e-16 Score=150.72 Aligned_cols=156 Identities=19% Similarity=0.205 Sum_probs=106.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|.+|+|||||+++|+..........+. +.. ......+......+.||||||+.+|....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~--------------~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 65 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTK--------------ADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIR 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcc--------------hhh-EEEEEEECCEEEEEEEEECCChhhhhHHH
Confidence 479999999999999999999765432222111 000 11122233345789999999999999999
Q ss_pred HHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCc
Q 005713 170 ERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~ 244 (681)
..+++.+|++++|+|..+... .....++..... .++|+++|+||+|+...+ .....+......+ ..+
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~-~~~~~~~~~~~~~-------~~~ 137 (164)
T cd04139 66 DNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKR-QVSSEEAANLARQ-------WGV 137 (164)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccccc-ccCHHHHHHHHHH-------hCC
Confidence 999999999999999876321 112233333332 479999999999986521 1112222222222 235
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
|++++||++|. |+.++++.+.+.+
T Consensus 138 ~~~~~Sa~~~~----------gi~~l~~~l~~~~ 161 (164)
T cd04139 138 PYVETSAKTRQ----------NVEKAFYDLVREI 161 (164)
T ss_pred eEEEeeCCCCC----------CHHHHHHHHHHHH
Confidence 89999999999 9999999988754
No 182
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.69 E-value=4.1e-16 Score=150.46 Aligned_cols=157 Identities=14% Similarity=0.125 Sum_probs=105.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~ 170 (681)
+|+++|+.++|||||+++|+...+........ ...++. ..+...+..++||||||+.++...+.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-------------~~~~~~---~~~~~~~~~~~i~Dt~G~~~~~~~~~ 65 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-------------PEITIP---ADVTPERVPTTIVDTSSRPQDRANLA 65 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-------------cceEee---eeecCCeEEEEEEeCCCchhhhHHHh
Confidence 79999999999999999998865432111100 011211 12234567899999999998888888
Q ss_pred HHHhhcceEEEEeeCCCCCchhhH--HHHHHHHH--cCCEEEEEEeecCCCCCCccc-chhhHHHHHHHhhcccccCCce
Q 005713 171 RILNMVEGVLLVVDSVEGPMPQTR--FVLKKALE--FGHAVVVVVNKIDRPSARPDY-VINSTFELFIELNATDEQCDFQ 245 (681)
Q Consensus 171 ~~l~~aD~~llVvDa~~g~~~qt~--~~l~~~~~--~gip~ivviNKiD~~~~~~~~-~~~ei~~~~~~l~~~~~~~~~p 245 (681)
..++.+|++++|+|+++...-+.. .++..+.. .++|+++|+||+|+.+..... ..+++......+.. ..+
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-----~~~ 140 (166)
T cd01893 66 AEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFRE-----IET 140 (166)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhc-----ccE
Confidence 888999999999998875444432 23343433 368999999999997544211 11222222222111 126
Q ss_pred EEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 246 vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
++++||++|. |+.++|+.+...+
T Consensus 141 ~~e~Sa~~~~----------~v~~lf~~~~~~~ 163 (166)
T cd01893 141 CVECSAKTLI----------NVSEVFYYAQKAV 163 (166)
T ss_pred EEEecccccc----------CHHHHHHHHHHHh
Confidence 9999999999 8999999987754
No 183
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.69 E-value=5.1e-16 Score=182.52 Aligned_cols=156 Identities=22% Similarity=0.378 Sum_probs=122.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc---
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD--- 164 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d--- 164 (681)
..++|+|+|++++|||||+++|++....+.. ...|+|.+.......|.+..+++|||||+..
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~---------------~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~ 338 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVE---------------DTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVE 338 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeec---------------CCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCc
Confidence 4578999999999999999999875432211 1237888887788889999999999999753
Q ss_pred -----hhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccc
Q 005713 165 -----FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (681)
Q Consensus 165 -----f~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~ 239 (681)
|...+..++..+|++|+|+|+.+++......++..++..++|+|+|+||+|+.... ....+ +..++..
T Consensus 339 ~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~-----~~~~~-~~~lg~~- 411 (712)
T PRK09518 339 GIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASE-----YDAAE-FWKLGLG- 411 (712)
T ss_pred cHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccch-----hhHHH-HHHcCCC-
Confidence 45566778899999999999999998888888888888999999999999975421 11112 2222221
Q ss_pred ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 240 ~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
.++++||++|. |+..|++.|++.++.
T Consensus 412 -----~~~~iSA~~g~----------GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 412 -----EPYPISAMHGR----------GVGDLLDEALDSLKV 437 (712)
T ss_pred -----CeEEEECCCCC----------CchHHHHHHHHhccc
Confidence 25789999999 999999999998865
No 184
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.69 E-value=4.8e-16 Score=157.11 Aligned_cols=160 Identities=17% Similarity=0.190 Sum_probs=109.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|..++|||||+++|+...+.. ... |+........+..+.+.||||||+..|....
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~------------------Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~ 61 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVS------------------TVGGAFYLKQWGPYNISIWDTAGREQFHGLG 61 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCC------------------ccceEEEEEEeeEEEEEEEeCCCcccchhhH
Confidence 379999999999999999998765431 111 1111222234466789999999999999999
Q ss_pred HHHHhhcceEEEEeeCCCCCch-hhHHHHHHHHH---cCCEEEEEEeecCCCCC------------------Ccccchhh
Q 005713 170 ERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALE---FGHAVVVVVNKIDRPSA------------------RPDYVINS 227 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~~---~gip~ivviNKiD~~~~------------------~~~~~~~e 227 (681)
..+++.+|++|+|+|+++...- ....+|..+.+ .++|+|+|+||+|+.+. ...-..++
T Consensus 62 ~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e 141 (220)
T cd04126 62 SMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLED 141 (220)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHH
Confidence 9999999999999998874322 22234444443 35899999999998651 11112233
Q ss_pred HHHHHHHhhcc---c----ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 228 TFELFIELNAT---D----EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 228 i~~~~~~l~~~---~----~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
...+..+++.. . ....++++++||++|. |+.++|+.+++.+
T Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~----------~V~elf~~i~~~~ 189 (220)
T cd04126 142 AKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGY----------NVDELFEYLFNLV 189 (220)
T ss_pred HHHHHHHhCccccccccccccccceEEEeeCCCCC----------CHHHHHHHHHHHH
Confidence 33333333210 0 0123689999999999 8899999988765
No 185
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.69 E-value=3.4e-16 Score=151.23 Aligned_cols=158 Identities=18% Similarity=0.192 Sum_probs=106.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|.+|+|||||+++|++.........+. +.. ......+......+.+|||||+.+|...+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~--------------~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 66 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTI--------------EDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMR 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcc--------------hhe-EEEEEEECCEEEEEEEEeCCCcccchhhh
Confidence 479999999999999999998765432221111 111 11222233334688999999999999999
Q ss_pred HHHHhhcceEEEEeeCCCCCchh-hHHHHHHHH----HcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCc
Q 005713 170 ERILNMVEGVLLVVDSVEGPMPQ-TRFVLKKAL----EFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~q-t~~~l~~~~----~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~ 244 (681)
...++.+|++|+|+|.++...-+ ...+...+. ..++|+++++||+|+...+.. ..++........ -..
T Consensus 67 ~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~-~~~~~~~~~~~~------~~~ 139 (168)
T cd04177 67 ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQV-SREDGVSLSQQW------GNV 139 (168)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCcc-CHHHHHHHHHHc------CCc
Confidence 99999999999999988642221 122222222 246899999999998654321 122222222111 125
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
|++++||++|. |+..+|+.++..+.
T Consensus 140 ~~~~~SA~~~~----------~i~~~f~~i~~~~~ 164 (168)
T cd04177 140 PFYETSARKRT----------NVDEVFIDLVRQII 164 (168)
T ss_pred eEEEeeCCCCC----------CHHHHHHHHHHHHh
Confidence 89999999999 89999999987653
No 186
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.69 E-value=2.5e-16 Score=156.95 Aligned_cols=158 Identities=19% Similarity=0.163 Sum_probs=102.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCccchh-
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDFG- 166 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~- 166 (681)
.+|+|+|..++|||||+++++...+......+. +..+.. ..+.+++ +.++||||||+.+|.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~--------------~~~~~~--~~i~~~~~~~~l~i~Dt~G~~~~~~ 64 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTE--------------HRRLYR--PAVVLSGRVYDLHILDVPNMQRYPG 64 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCcc--------------ccccce--eEEEECCEEEEEEEEeCCCcccCCc
Confidence 379999999999999999998765433222221 111111 2233444 678899999987652
Q ss_pred ---HH----HHHHHhhcceEEEEeeCCCCCchh-hHHHHHHHHH------cCCEEEEEEeecCCCCCCcccchhhHHHHH
Q 005713 167 ---GE----VERILNMVEGVLLVVDSVEGPMPQ-TRFVLKKALE------FGHAVVVVVNKIDRPSARPDYVINSTFELF 232 (681)
Q Consensus 167 ---~e----~~~~l~~aD~~llVvDa~~g~~~q-t~~~l~~~~~------~gip~ivviNKiD~~~~~~~~~~~ei~~~~ 232 (681)
.+ ...+++.+|++|+|+|+++...-+ ...++..+.. .++|+++|+||+|+...+.. ..+++..+.
T Consensus 65 ~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~-~~~~~~~~~ 143 (198)
T cd04142 65 TAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFA-PRHVLSVLV 143 (198)
T ss_pred cchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccc-cHHHHHHHH
Confidence 22 334578899999999998753322 2233333332 45899999999999654321 111222221
Q ss_pred HHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 233 IELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 233 ~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
.+ ...++++++||++|. |+..||+.+++.+-.
T Consensus 144 ~~------~~~~~~~e~Sak~g~----------~v~~lf~~i~~~~~~ 175 (198)
T cd04142 144 RK------SWKCGYLECSAKYNW----------HILLLFKELLISATT 175 (198)
T ss_pred HH------hcCCcEEEecCCCCC----------CHHHHHHHHHHHhhc
Confidence 11 134689999999999 899999999876643
No 187
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.69 E-value=1.3e-16 Score=146.47 Aligned_cols=164 Identities=20% Similarity=0.208 Sum_probs=122.5
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
....+|.+||.+|+|||||+-++....+....+.++ |+.+..+...+..+..++.||||+|+++|.
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tI--------------GvDFkvk~m~vdg~~~KlaiWDTAGqErFR 74 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTI--------------GVDFKVKVMQVDGKRLKLAIWDTAGQERFR 74 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCcee--------------eeeEEEEEEEEcCceEEEEEEeccchHhhh
Confidence 346899999999999999999999988776555555 888888999999999999999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHHc----CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF----GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~~----gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
..+.++++.|.++|+|+|.+.... .....|++.+..+ ++-.++|.||+|+...+. -..++-.++.++.
T Consensus 75 tLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~-V~reEG~kfAr~h------ 147 (209)
T KOG0080|consen 75 TLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERV-VDREEGLKFARKH------ 147 (209)
T ss_pred ccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhccc-ccHHHHHHHHHhh------
Confidence 999999999999999999876432 2233334444433 355788999999764331 1122223333332
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC-CCCc
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI-PGPR 282 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l-p~p~ 282 (681)
.+-++.+||++.. +++..|+.++..+ ..|.
T Consensus 148 -~~LFiE~SAkt~~----------~V~~~FeelveKIi~tp~ 178 (209)
T KOG0080|consen 148 -RCLFIECSAKTRE----------NVQCCFEELVEKIIETPS 178 (209)
T ss_pred -CcEEEEcchhhhc----------cHHHHHHHHHHHHhcCcc
Confidence 2348999999998 7888888777654 4443
No 188
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.69 E-value=6.5e-16 Score=148.43 Aligned_cols=155 Identities=17% Similarity=0.182 Sum_probs=105.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~ 170 (681)
+|+++|..++|||||+.+++...+......+. |.........+......+.||||||+.+|.....
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 67 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTI--------------GVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITK 67 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCce--------------eeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHH
Confidence 69999999999999999998765432222211 2222222333332336789999999999998889
Q ss_pred HHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceE
Q 005713 171 RILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQA 246 (681)
Q Consensus 171 ~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pv 246 (681)
.+++.+|++++|+|..+.-. .....++..+.. .++|+++|.||+|+...+.. ..++...+.+. ...++
T Consensus 68 ~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v-~~~~~~~~~~~-------~~~~~ 139 (161)
T cd04117 68 QYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQV-GDEQGNKLAKE-------YGMDF 139 (161)
T ss_pred HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCC-CHHHHHHHHHH-------cCCEE
Confidence 99999999999999876322 222233333333 25899999999998654311 11222222222 23579
Q ss_pred EEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 247 IYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 247 i~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
+++||++|. |+.++|+.|.+.
T Consensus 140 ~e~Sa~~~~----------~v~~~f~~l~~~ 160 (161)
T cd04117 140 FETSACTNS----------NIKESFTRLTEL 160 (161)
T ss_pred EEEeCCCCC----------CHHHHHHHHHhh
Confidence 999999998 899999998754
No 189
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.69 E-value=4.8e-16 Score=147.35 Aligned_cols=165 Identities=22% Similarity=0.244 Sum_probs=129.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC-eEEEEEeCCCccchhH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND-TKINIIDTPGHSDFGG 167 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-~~i~iiDTPGh~df~~ 167 (681)
.-+|+|+|+.++||||++.++..+.......... -++.. ..|.+|+......+.+.+ ..+.|+|||||.+|.-
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~----~~s~k--~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADAS----SVSGK--GKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKF 83 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeecccc----ccccc--cccceeEeecccceEEcCcceEEEecCCCcHHHHH
Confidence 4689999999999999999998876532211000 00111 145588888888888877 9999999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcC-CEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceE
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFG-HAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQA 246 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~g-ip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pv 246 (681)
+++-.++.++++|++||++.+.....++.+....... +|++|++||.|+.++.+.+.+.++.++ - ....|+
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~---~-----~~~~~v 155 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKL---E-----LLSVPV 155 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHh---c-----cCCCce
Confidence 9999999999999999999987777778888888887 999999999999998765544443332 1 145789
Q ss_pred EEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 247 IYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 247 i~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
|..+|..++ +..+.|+.+..+
T Consensus 156 i~~~a~e~~----------~~~~~L~~ll~~ 176 (187)
T COG2229 156 IEIDATEGE----------GARDQLDVLLLK 176 (187)
T ss_pred eeeecccch----------hHHHHHHHHHhh
Confidence 999999998 888888877765
No 190
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.69 E-value=2.5e-16 Score=155.60 Aligned_cols=162 Identities=15% Similarity=0.130 Sum_probs=108.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
++|+++|..|+|||||+++|+...+......+. +... .....+......++||||||+.+|....
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~--------------~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~ 65 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV--------------FENY-VHDIFVDGLHIELSLWDTAGQEEFDRLR 65 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcc--------------eeee-EEEEEECCEEEEEEEEECCCChhccccc
Confidence 579999999999999999998765432222221 1111 1112223334789999999999998877
Q ss_pred HHHHhhcceEEEEeeCCCCCchhhH--HHHHHHHHc--CCEEEEEEeecCCCCCCccc-----------chhhHHHHHHH
Q 005713 170 ERILNMVEGVLLVVDSVEGPMPQTR--FVLKKALEF--GHAVVVVVNKIDRPSARPDY-----------VINSTFELFIE 234 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~qt~--~~l~~~~~~--gip~ivviNKiD~~~~~~~~-----------~~~ei~~~~~~ 234 (681)
..+++.+|++|+|+|.++...-+.. .++..+... +.|+++|+||+|+...+... ..++...+...
T Consensus 66 ~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 145 (189)
T cd04134 66 SLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKR 145 (189)
T ss_pred cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHH
Confidence 7888999999999998874333322 244444443 68999999999997543211 01111111111
Q ss_pred hhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCc
Q 005713 235 LNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPR 282 (681)
Q Consensus 235 l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 282 (681)
...++++++||++|. |+.++|+.+.+.+..|.
T Consensus 146 ------~~~~~~~e~SAk~~~----------~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 146 ------INALRYLECSAKLNR----------GVNEAFTEAARVALNVR 177 (189)
T ss_pred ------cCCCEEEEccCCcCC----------CHHHHHHHHHHHHhccc
Confidence 112579999999999 99999999998876553
No 191
>PRK00089 era GTPase Era; Reviewed
Probab=99.69 E-value=5.6e-16 Score=163.72 Aligned_cols=161 Identities=26% Similarity=0.326 Sum_probs=111.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh-
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG- 166 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~- 166 (681)
+...|+++|.+|+|||||+++|++.......... ++|.......+..++..+.+|||||+.+..
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~---------------~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~ 68 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKP---------------QTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR 68 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCC---------------CcccccEEEEEEcCCceEEEEECCCCCCchh
Confidence 3467999999999999999999976443221111 122222222233355799999999975532
Q ss_pred -------HHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccc
Q 005713 167 -------GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (681)
Q Consensus 167 -------~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~ 239 (681)
..+..++..+|++++|+|+.++.......++..+...+.|+++|+||+|+.... .. ..+..+.+.+..
T Consensus 69 ~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~-~~-l~~~~~~l~~~~--- 143 (292)
T PRK00089 69 ALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDK-EE-LLPLLEELSELM--- 143 (292)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCH-HH-HHHHHHHHHhhC---
Confidence 344557788999999999998777777777777777789999999999986321 11 111112221111
Q ss_pred ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 240 ~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
...+++++||++|. |+..|++.+.+++|.
T Consensus 144 --~~~~i~~iSA~~~~----------gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 144 --DFAEIVPISALKGD----------NVDELLDVIAKYLPE 172 (292)
T ss_pred --CCCeEEEecCCCCC----------CHHHHHHHHHHhCCC
Confidence 12469999999998 999999999999864
No 192
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.69 E-value=2.1e-16 Score=153.14 Aligned_cols=158 Identities=16% Similarity=0.130 Sum_probs=103.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|+.++|||||+++++...+......+. .........+....+.++||||||+.+|....
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~---------------~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 65 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV---------------FDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLR 65 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce---------------eeeeEEEEEECCEEEEEEEEeCCCcccccccc
Confidence 379999999999999999998765432222211 01111122233334668899999999998888
Q ss_pred HHHHhhcceEEEEeeCCCCCchhhH--HHHHHHH--HcCCEEEEEEeecCCCCCCcc-----------cchhhHHHHHHH
Q 005713 170 ERILNMVEGVLLVVDSVEGPMPQTR--FVLKKAL--EFGHAVVVVVNKIDRPSARPD-----------YVINSTFELFIE 234 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~qt~--~~l~~~~--~~gip~ivviNKiD~~~~~~~-----------~~~~ei~~~~~~ 234 (681)
...++.+|++|+|+|..+...-+.. .++..+. ..++|+++|+||+|+.+.... -..++.......
T Consensus 66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 145 (174)
T cd04135 66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKE 145 (174)
T ss_pred cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHH
Confidence 8888999999999998875332222 2233333 247899999999998643210 011222222222
Q ss_pred hhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 235 LNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 235 l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
++ ..+++++||++|. |+.++|+.+++.+
T Consensus 146 ~~------~~~~~e~Sa~~~~----------gi~~~f~~~~~~~ 173 (174)
T cd04135 146 IG------AHCYVECSALTQK----------GLKTVFDEAILAI 173 (174)
T ss_pred cC------CCEEEEecCCcCC----------CHHHHHHHHHHHh
Confidence 22 1368999999999 9999999988653
No 193
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.68 E-value=4.4e-16 Score=154.19 Aligned_cols=163 Identities=13% Similarity=0.088 Sum_probs=109.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
..+|+++|..++|||||+.+++...+......+. |... .....+..+.+.++||||||++.|...
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~--------------~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l 67 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV--------------FDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRL 67 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCce--------------Eeee-EEEEEECCEEEEEEEEECCCchhhhhh
Confidence 3689999999999999999999865532222222 1111 112233334478999999999999998
Q ss_pred HHHHHhhcceEEEEeeCCCCCchhhH-H-HHHHHHH--cCCEEEEEEeecCCCCCCcc-c---------c-hhhHHHHHH
Q 005713 169 VERILNMVEGVLLVVDSVEGPMPQTR-F-VLKKALE--FGHAVVVVVNKIDRPSARPD-Y---------V-INSTFELFI 233 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~~~qt~-~-~l~~~~~--~gip~ivviNKiD~~~~~~~-~---------~-~~ei~~~~~ 233 (681)
...+++.+|++|+|+|.++...-+.. . ++..+.. .++|+++|+||.|+.+.... + + .++...+..
T Consensus 68 ~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~ 147 (191)
T cd01875 68 RTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAK 147 (191)
T ss_pred hhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 88999999999999998874332222 2 2232332 36899999999998654210 0 0 011111111
Q ss_pred HhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCc
Q 005713 234 ELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPR 282 (681)
Q Consensus 234 ~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 282 (681)
+. ..++++++||++|. |+.++|+.+++.+-.|.
T Consensus 148 ~~------~~~~~~e~SAk~g~----------~v~e~f~~l~~~~~~~~ 180 (191)
T cd01875 148 QI------HAVKYLECSALNQD----------GVKEVFAEAVRAVLNPT 180 (191)
T ss_pred Hc------CCcEEEEeCCCCCC----------CHHHHHHHHHHHHhccc
Confidence 11 12579999999999 89999999998775553
No 194
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.68 E-value=5e-16 Score=152.62 Aligned_cols=159 Identities=16% Similarity=0.146 Sum_probs=108.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
...+|+++|..++|||||+.+++...+......++ +... .....+......+.||||+|.+.|..
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~--------------~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~ 68 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV--------------FENY-TASFEIDTQRIELSLWDTSGSPYYDN 68 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCce--------------eeee-EEEEEECCEEEEEEEEECCCchhhHh
Confidence 45689999999999999999999876543322222 1111 12223333446899999999999998
Q ss_pred HHHHHHhhcceEEEEeeCCCCCchhh--HHHHHHHHHc--CCEEEEEEeecCCCCC----------Cc-ccchhhHHHHH
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMPQT--RFVLKKALEF--GHAVVVVVNKIDRPSA----------RP-DYVINSTFELF 232 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~qt--~~~l~~~~~~--gip~ivviNKiD~~~~----------~~-~~~~~ei~~~~ 232 (681)
....+++.+|++|||+|.++...-+. ..|+..+.+. +.|+|+|+||+|+.+. +. .-..++...+.
T Consensus 69 ~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a 148 (182)
T cd04172 69 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMA 148 (182)
T ss_pred hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHH
Confidence 88889999999999999887533333 2344444443 5899999999998542 10 11122333333
Q ss_pred HHhhcccccCCceEEEeecccCCCCCCCCCCCCC-cchhHHHHHhh
Q 005713 233 IELNATDEQCDFQAIYASGIQGKAGLSPDNLADD-LGPLFESIMRC 277 (681)
Q Consensus 233 ~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~g-i~~Ll~~I~~~ 277 (681)
.++++ .+++++||++|. | +.++|+.++..
T Consensus 149 ~~~~~------~~~~E~SAk~~~----------n~v~~~F~~~~~~ 178 (182)
T cd04172 149 KQIGA------ATYIECSALQSE----------NSVRDIFHVATLA 178 (182)
T ss_pred HHcCC------CEEEECCcCCCC----------CCHHHHHHHHHHH
Confidence 22221 379999999999 7 89999888763
No 195
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.68 E-value=4.3e-16 Score=152.03 Aligned_cols=155 Identities=15% Similarity=0.092 Sum_probs=103.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|..++|||||+.+++...+......+. |..+. ....+....+.++||||||+.+|....
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~--------------~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV--------------FDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLR 66 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce--------------eeeeE-EEEEECCEEEEEEEEECCCccchhhhh
Confidence 579999999999999999999765532222221 11111 111222223788999999999998888
Q ss_pred HHHHhhcceEEEEeeCCCCCchhhH-H-HHHHHHHc--CCEEEEEEeecCCCCCCcccchh-------------hHHHHH
Q 005713 170 ERILNMVEGVLLVVDSVEGPMPQTR-F-VLKKALEF--GHAVVVVVNKIDRPSARPDYVIN-------------STFELF 232 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~qt~-~-~l~~~~~~--gip~ivviNKiD~~~~~~~~~~~-------------ei~~~~ 232 (681)
..+++.+|++|+|+|.++...-+.. . |+..+... ++|+|+|+||+|+.... ...+ +...+.
T Consensus 67 ~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~--~~~~~l~~~~~~~v~~~~~~~~a 144 (175)
T cd01874 67 PLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP--STIEKLAKNKQKPITPETGEKLA 144 (175)
T ss_pred hhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhCh--hhHHHhhhccCCCcCHHHHHHHH
Confidence 8899999999999998875433222 2 33334332 68999999999986431 1111 111111
Q ss_pred HHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 233 IELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 233 ~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
.+. ..++++++||++|. |+.++|+.+++.
T Consensus 145 ~~~------~~~~~~e~SA~tg~----------~v~~~f~~~~~~ 173 (175)
T cd01874 145 RDL------KAVKYVECSALTQK----------GLKNVFDEAILA 173 (175)
T ss_pred HHh------CCcEEEEecCCCCC----------CHHHHHHHHHHH
Confidence 111 12579999999999 999999988764
No 196
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.68 E-value=1.5e-16 Score=186.88 Aligned_cols=207 Identities=17% Similarity=0.160 Sum_probs=136.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc---
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD--- 164 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d--- 164 (681)
..++|+++|++|+|||||+++|++....+... ..|+|.+.....+.+++..+.||||||+.+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~---------------~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~ 513 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVND---------------LAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQH 513 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCC---------------CCCCCcCcceeEEEECCCEEEEEECCCcccCcc
Confidence 46899999999999999999999764322111 226777776677888899999999999632
Q ss_pred ------hhHH--HHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhh
Q 005713 165 ------FGGE--VERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN 236 (681)
Q Consensus 165 ------f~~e--~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~ 236 (681)
|... ...+++.+|++|+|+|++++...++..++..+...++|+++|+||+|+.+... .+.+...+....
T Consensus 514 ~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~---~~~~~~~~~~~l 590 (712)
T PRK09518 514 KLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFR---RQRLERLWKTEF 590 (712)
T ss_pred cchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhH---HHHHHHHHHHhc
Confidence 2211 23457889999999999999999999999988888999999999999865321 122222221110
Q ss_pred cccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC-----CccccCCceEEEEEEeeecCC-Cc-eEEEEE
Q 005713 237 ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG-----PRIEKDGALQMLATNLEYDEH-KG-RIAIGR 309 (681)
Q Consensus 237 ~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~-----p~~~~~~p~~~~V~~~~~d~~-~G-~v~~gr 309 (681)
......|++++||++|. |+..|++.+.+.++. |....+..+...+. ....+. .| ++-+-+
T Consensus 591 --~~~~~~~ii~iSAktg~----------gv~~L~~~i~~~~~~~~~~i~T~~Ln~~l~~~~~-~~~~p~~~g~~~ki~y 657 (712)
T PRK09518 591 --DRVTWARRVNLSAKTGW----------HTNRLAPAMQEALESWDQRIPTGKLNAFLGKIQA-EHPHPLRGGKQPRILF 657 (712)
T ss_pred --cCCCCCCEEEEECCCCC----------CHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHh-hCCCCccCCeeeeEEE
Confidence 01113478999999999 888888888776543 11111222222221 112221 22 344445
Q ss_pred eecccccCCCEEEEcc
Q 005713 310 LHAGVLRKGMEVRVCT 325 (681)
Q Consensus 310 V~sG~lk~gd~v~~~~ 325 (681)
+.++..+|-..+.+.+
T Consensus 658 ~~q~~~~Pp~f~~f~~ 673 (712)
T PRK09518 658 ATQASTRPPRFVIFTT 673 (712)
T ss_pred EECCCCCCCEEEEEcC
Confidence 5677777776666643
No 197
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.68 E-value=4.6e-16 Score=151.70 Aligned_cols=157 Identities=15% Similarity=0.140 Sum_probs=104.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|..++|||||+.+++...+......+. +. .......+......++||||||+.+|....
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~--------------~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLR 66 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcc--------------ee-eeEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 479999999999999999998765432222221 00 111122233344688999999999999888
Q ss_pred HHHHhhcceEEEEeeCCCCCchhhH--HHHHHHHHc--CCEEEEEEeecCCCCCCc--c---------cchhhHHHHHHH
Q 005713 170 ERILNMVEGVLLVVDSVEGPMPQTR--FVLKKALEF--GHAVVVVVNKIDRPSARP--D---------YVINSTFELFIE 234 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~qt~--~~l~~~~~~--gip~ivviNKiD~~~~~~--~---------~~~~ei~~~~~~ 234 (681)
..+++.+|++|+|+|.++...-+.. .++..+... +.|+++|+||+|+.+.+. + -..++..++..+
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 146 (174)
T cd01871 67 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 146 (174)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHH
Confidence 8899999999999999874333322 233333332 589999999999864321 0 011112222222
Q ss_pred hhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 235 LNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 235 l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
++ .++++++||++|. |+.++|+.+.+.
T Consensus 147 ~~------~~~~~e~Sa~~~~----------~i~~~f~~l~~~ 173 (174)
T cd01871 147 IG------AVKYLECSALTQK----------GLKTVFDEAIRA 173 (174)
T ss_pred cC------CcEEEEecccccC----------CHHHHHHHHHHh
Confidence 21 2479999999999 899999988764
No 198
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.68 E-value=1.7e-16 Score=135.86 Aligned_cols=85 Identities=33% Similarity=0.516 Sum_probs=78.6
Q ss_pred CCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEecccc
Q 005713 286 DGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDD 365 (681)
Q Consensus 286 ~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~ 365 (681)
++||.++||++.+|++.|+++++||++|+|++||.|++.. +.. .||.+|+.+.|.++.++++|.|||||++.|+++
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~~~---~~v~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~ 76 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-EEK---IKITELRVFNNGEVVTADTVTAGDIAILTGLKG 76 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-CcE---EEeceeEEEeCCCeEECcEECCCCEEEEECCCC
Confidence 3699999999999999999999999999999999998876 333 489999999999999999999999999999999
Q ss_pred cccCCeeec
Q 005713 366 IQIGETIAD 374 (681)
Q Consensus 366 ~~~Gdtl~~ 374 (681)
+.+||||++
T Consensus 77 ~~~Gdtl~~ 85 (85)
T cd03690 77 LRVGDVLGD 85 (85)
T ss_pred CcCccccCC
Confidence 999999963
No 199
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.68 E-value=3.8e-16 Score=155.95 Aligned_cols=153 Identities=23% Similarity=0.225 Sum_probs=101.1
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCe-EEEEEeCCCccch
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDT-KINIIDTPGHSDF 165 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~-~i~iiDTPGh~df 165 (681)
+..++|+|+|++|+|||||+++|+......... .+.|+......+.+.+. .+.||||||+.+.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~----------------~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 102 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQ----------------LFATLDPTTRRLRLPDGREVLLTDTVGFIRD 102 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCc----------------cceeccceeEEEEecCCceEEEeCCCccccC
Confidence 457899999999999999999998764221110 02333333444555554 8999999998432
Q ss_pred -hHH-------HHHHHhhcceEEEEeeCCCCCchhhH-HHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHH
Q 005713 166 -GGE-------VERILNMVEGVLLVVDSVEGPMPQTR-FVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFI 233 (681)
Q Consensus 166 -~~e-------~~~~l~~aD~~llVvDa~~g~~~qt~-~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~ 233 (681)
... ....+..+|++++|+|+++....... .+...+.. .++|+++|+||+|+....... ..+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~------~~~- 175 (204)
T cd01878 103 LPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE------ERL- 175 (204)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH------HHh-
Confidence 111 11235679999999999876544332 23333333 368999999999986543111 111
Q ss_pred HhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 234 ELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 234 ~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.....+++++||++|. |+..+++.|.+.+
T Consensus 176 ------~~~~~~~~~~Sa~~~~----------gi~~l~~~L~~~~ 204 (204)
T cd01878 176 ------EAGRPDAVFISAKTGE----------GLDELLEAIEELL 204 (204)
T ss_pred ------hcCCCceEEEEcCCCC----------CHHHHHHHHHhhC
Confidence 1124579999999999 8999999887653
No 200
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.68 E-value=5.8e-16 Score=147.84 Aligned_cols=153 Identities=22% Similarity=0.310 Sum_probs=103.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEee-CCeEEEEEeCCCccchhHHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY-NDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~i~iiDTPGh~df~~e~ 169 (681)
+|+++|.+|+|||||+++|........ ..+. |.++. .+.. .+..++||||||+..|...+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~--------------~~~~~----~~~~~~~~~l~i~D~~G~~~~~~~~ 61 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTV--------------GFNVE----MLQLEKHLSLTVWDVGGQEKMRTVW 61 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCcc--------------CcceE----EEEeCCceEEEEEECCCCHhHHHHH
Confidence 489999999999999999987654311 1111 22221 1222 35789999999999999888
Q ss_pred HHHHhhcceEEEEeeCCCCC-chhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCc
Q 005713 170 ERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~ 244 (681)
..++..+|++|+|+|+.+.. ......++..... .+.|+++|+||+|+..... .+++...+. +........+
T Consensus 62 ~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~i~~~~~-~~~~~~~~~~ 137 (160)
T cd04156 62 KCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT---AEEITRRFK-LKKYCSDRDW 137 (160)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC---HHHHHHHcC-CcccCCCCcE
Confidence 88999999999999998753 1222333333322 4789999999999864321 122222221 1111111346
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHh
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~ 276 (681)
+++++||++|. |+.++++.|.+
T Consensus 138 ~~~~~Sa~~~~----------gv~~~~~~i~~ 159 (160)
T cd04156 138 YVQPCSAVTGE----------GLAEAFRKLAS 159 (160)
T ss_pred EEEecccccCC----------ChHHHHHHHhc
Confidence 79999999999 99999998864
No 201
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.68 E-value=8.4e-16 Score=152.03 Aligned_cols=161 Identities=21% Similarity=0.293 Sum_probs=110.3
Q ss_pred cCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCcc-
Q 005713 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS- 163 (681)
Q Consensus 85 ~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~- 163 (681)
.....++|+++|++|+|||||+++|+...+....... .|.|....... + +..+.||||||+.
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~--------------~~~t~~~~~~~--~-~~~l~l~DtpG~~~ 82 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKT--------------PGRTQLINFFE--V-NDKLRLVDLPGYGY 82 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCC--------------CCceeEEEEEe--c-CCeEEEeCCCCCCC
Confidence 4456889999999999999999999975422111111 14444333322 2 4789999999963
Q ss_pred ---------chhHHHHHHHhhc---ceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCC-cccchhhHHH
Q 005713 164 ---------DFGGEVERILNMV---EGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSAR-PDYVINSTFE 230 (681)
Q Consensus 164 ---------df~~e~~~~l~~a---D~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~-~~~~~~ei~~ 230 (681)
.|......+++.+ +++++|+|+..+.......++..+...++|+++++||+|+.... .+...+++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~ 162 (196)
T PRK00454 83 AKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRK 162 (196)
T ss_pred cCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHH
Confidence 3444445555544 67888999888776666666777777899999999999986432 1222233333
Q ss_pred HHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 231 LFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 231 ~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.+... ..+++++||++|. |+..+++.|.+.+.
T Consensus 163 ~l~~~-------~~~~~~~Sa~~~~----------gi~~l~~~i~~~~~ 194 (196)
T PRK00454 163 ALKFG-------DDEVILFSSLKKQ----------GIDELRAAIAKWLA 194 (196)
T ss_pred HHHhc-------CCceEEEEcCCCC----------CHHHHHHHHHHHhc
Confidence 33211 3578999999998 89999999887764
No 202
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.68 E-value=9.5e-16 Score=144.82 Aligned_cols=151 Identities=22% Similarity=0.310 Sum_probs=105.3
Q ss_pred EEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHHH
Q 005713 92 IAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVER 171 (681)
Q Consensus 92 V~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~~ 171 (681)
|+++|+.|+|||||+++|...........+. |.. ...+..++..+.+|||||+..|...+..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~--------------~~~----~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTV--------------GFN----MRKVTKGNVTLKVWDLGGQPRFRSMWER 63 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCC--------------Ccc----eEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 7899999999999999998764432221111 221 2234556789999999999999999999
Q ss_pred HHhhcceEEEEeeCCCCC-chhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcc-cccCCce
Q 005713 172 ILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT-DEQCDFQ 245 (681)
Q Consensus 172 ~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~-~~~~~~p 245 (681)
+++.+|++++|+|+.+.. ..+...++..+.. .++|+++|+||+|+.+... .+++.. .+... .....++
T Consensus 64 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~---~~~~~~---~~~~~~~~~~~~~ 137 (159)
T cd04159 64 YCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS---VDELIE---QMNLKSITDREVS 137 (159)
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC---HHHHHH---HhCcccccCCceE
Confidence 999999999999987632 2333344444432 4789999999999865421 122222 22111 1123468
Q ss_pred EEEeecccCCCCCCCCCCCCCcchhHHHHHh
Q 005713 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (681)
Q Consensus 246 vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~ 276 (681)
++++||++|. |+..+++.|.+
T Consensus 138 ~~~~Sa~~~~----------gi~~l~~~l~~ 158 (159)
T cd04159 138 CYSISCKEKT----------NIDIVLDWLIK 158 (159)
T ss_pred EEEEEeccCC----------ChHHHHHHHhh
Confidence 9999999999 89999988864
No 203
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.68 E-value=5.3e-16 Score=147.41 Aligned_cols=155 Identities=18% Similarity=0.225 Sum_probs=106.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~ 170 (681)
+|+++|+.|+|||||+++|+..........+. + ........+....+.+++||+||+.++.....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 65 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTI--------------E-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRD 65 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCCh--------------h-HeEEEEEEECCEEEEEEEEECCChHHHHHHHH
Confidence 58999999999999999998765322221111 0 11111222222347899999999999999999
Q ss_pred HHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCce
Q 005713 171 RILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (681)
Q Consensus 171 ~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~p 245 (681)
..++.+|++++|+|..+... .+...++..+.. .+.|+++|+||+|+...+ ....+++....... ..|
T Consensus 66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~-------~~~ 137 (160)
T cd00876 66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENER-QVSKEEGKALAKEW-------GCP 137 (160)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccc-eecHHHHHHHHHHc-------CCc
Confidence 99999999999999876422 223334443332 368999999999987532 12233343433322 257
Q ss_pred EEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 246 vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
++++||++|. |+.++++.|.+++
T Consensus 138 ~~~~S~~~~~----------~i~~l~~~l~~~i 160 (160)
T cd00876 138 FIETSAKDNI----------NIDEVFKLLVREI 160 (160)
T ss_pred EEEeccCCCC----------CHHHHHHHHHhhC
Confidence 9999999998 9999999998753
No 204
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.68 E-value=3.9e-16 Score=155.63 Aligned_cols=151 Identities=17% Similarity=0.173 Sum_probs=107.5
Q ss_pred EeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHHHHHh
Q 005713 95 IAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVERILN 174 (681)
Q Consensus 95 iG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~~~l~ 174 (681)
+|..++|||||+.+++...+......++ |+++......+..+...++||||||+.+|...+..+++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Ti--------------g~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~ 66 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATL--------------GVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYI 66 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCce--------------eEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhc
Confidence 6999999999999998654432222222 44444444444445679999999999999999999999
Q ss_pred hcceEEEEeeCCCCCchhh-HHHHHHHHH--cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceEEEeec
Q 005713 175 MVEGVLLVVDSVEGPMPQT-RFVLKKALE--FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASG 251 (681)
Q Consensus 175 ~aD~~llVvDa~~g~~~qt-~~~l~~~~~--~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA 251 (681)
.+|++|+|+|.++....+. ..|+..+.+ .++|+++|+||+|+.... +..+...+. ....++++++||
T Consensus 67 ~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~---v~~~~~~~~-------~~~~~~~~e~SA 136 (200)
T smart00176 67 QGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRK---VKAKSITFH-------RKKNLQYYDISA 136 (200)
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc---CCHHHHHHH-------HHcCCEEEEEeC
Confidence 9999999999988654332 334444544 368999999999985321 111111111 123568999999
Q ss_pred ccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 252 IQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 252 ~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
++|. |+..+|+.+.+.+.
T Consensus 137 k~~~----------~v~~~F~~l~~~i~ 154 (200)
T smart00176 137 KSNY----------NFEKPFLWLARKLI 154 (200)
T ss_pred CCCC----------CHHHHHHHHHHHHH
Confidence 9999 89999999987663
No 205
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.68 E-value=4.3e-16 Score=153.28 Aligned_cols=159 Identities=18% Similarity=0.202 Sum_probs=109.5
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
.+..+|+++|..|+|||||+++|......... .+ .+.+ ...+.+++.++++|||||+..+.
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~-~t--------------~~~~----~~~~~~~~~~~~~~D~~G~~~~~ 75 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQ-PT--------------QHPT----SEELAIGNIKFTTFDLGGHQQAR 75 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccC-Cc--------------cccc----eEEEEECCEEEEEEECCCCHHHH
Confidence 45688999999999999999999875332110 01 1222 23455678899999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCC-chhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcc---
Q 005713 167 GEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT--- 238 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~--- 238 (681)
..+..++..+|++|+|+|+++.. .......+..+.. .+.|+++|+||+|+..+. ..+++.+.+.-....
T Consensus 76 ~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~---~~~~i~~~l~l~~~~~~~ 152 (184)
T smart00178 76 RLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA---SEDELRYALGLTNTTGSK 152 (184)
T ss_pred HHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC---CHHHHHHHcCCCcccccc
Confidence 99999999999999999998642 2233334443332 478999999999986432 123343333100000
Q ss_pred --cccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 239 --DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 239 --~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
.....+-++++||++|. |+.+++++|.+.
T Consensus 153 ~~~~~~~~~i~~~Sa~~~~----------g~~~~~~wl~~~ 183 (184)
T smart00178 153 GKVGVRPLEVFMCSVVRRM----------GYGEGFKWLSQY 183 (184)
T ss_pred cccCCceeEEEEeecccCC----------ChHHHHHHHHhh
Confidence 01123458999999999 999999998764
No 206
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.68 E-value=8.3e-16 Score=151.50 Aligned_cols=158 Identities=20% Similarity=0.189 Sum_probs=107.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|..++|||||+++|+...+......+. |.+.......+....+.+.||||||+.+|...+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~ 66 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTI--------------GVDFKIKTVYIENKIIKLQIWDTNGQERFRSLN 66 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCce--------------eeEEEEEEEEECCEEEEEEEEECCCcHHHHhhH
Confidence 379999999999999999998765532222222 333333333444445788999999999999999
Q ss_pred HHHHhhcceEEEEeeCCCCCchh-hHHHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCce
Q 005713 170 ERILNMVEGVLLVVDSVEGPMPQ-TRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~q-t~~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~p 245 (681)
...++.+|++|+|+|.++...-. ...++..+.. .+.|+++|+||+|+.+.... ...+...+.. ...++
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v-~~~~~~~~~~-------~~~~~ 138 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVV-DSNIAKSFCD-------SLNIP 138 (188)
T ss_pred HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccC-CHHHHHHHHH-------HcCCe
Confidence 99999999999999988743222 2233333433 24799999999998743210 1111122111 12457
Q ss_pred EEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 246 vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
++++||++|. |+..+|+.+++.+.
T Consensus 139 ~~evSa~~~~----------~i~~~f~~l~~~~~ 162 (188)
T cd04125 139 FFETSAKQSI----------NVEEAFILLVKLII 162 (188)
T ss_pred EEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 9999999998 88888888877653
No 207
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.68 E-value=1.7e-15 Score=144.17 Aligned_cols=157 Identities=25% Similarity=0.269 Sum_probs=108.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh--
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG-- 166 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~-- 166 (681)
.++|+++|.+|+|||||+++|++......... ...+.......+...+..+.+|||||+.+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 67 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPK---------------PQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKK 67 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCC---------------CCceeceEEEEEEcCCeEEEEEECCCCCcchHH
Confidence 46799999999999999999987533211110 0122222333345556889999999986543
Q ss_pred ------HHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 167 ------GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 167 ------~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
......+..+|++++|+|+.+........++..+...+.|+++|+||+|+.... ....+....+...
T Consensus 68 ~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~----- 140 (168)
T cd04163 68 LGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDK--EDLLPLLEKLKEL----- 140 (168)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccH--HHHHHHHHHHHhc-----
Confidence 234556888999999999998766666677777777789999999999986321 1222222222211
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
....+++.+|++++. ++..+++.|.+.
T Consensus 141 ~~~~~~~~~s~~~~~----------~~~~l~~~l~~~ 167 (168)
T cd04163 141 GPFAEIFPISALKGE----------NVDELLEEIVKY 167 (168)
T ss_pred cCCCceEEEEeccCC----------ChHHHHHHHHhh
Confidence 113579999999998 899999988764
No 208
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.68 E-value=1e-15 Score=146.82 Aligned_cols=158 Identities=20% Similarity=0.257 Sum_probs=105.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEe-eCCeEEEEEeCCCccchhHHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT-YNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~-~~~~~i~iiDTPGh~df~~e~ 169 (681)
+|+++|.+++|||||+++|......+...... ..|..+......+. .....+.+|||||+..|...+
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~------------t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 69 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLM------------TTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMV 69 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCC------------ceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHH
Confidence 79999999999999999998642222111100 01333333333333 344789999999999999989
Q ss_pred HHHHhhcceEEEEeeCCCCCch-hhHHHHHHHHHc--CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceE
Q 005713 170 ERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQA 246 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~~~--gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pv 246 (681)
..+++.+|++++|+|.++.... .-..++..+... +.|+++|+||+|+...+ .+..+....+. ....+++
T Consensus 70 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~------~~~~~~~ 141 (164)
T cd04101 70 SNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKA--EVTDAQAQAFA------QANQLKF 141 (164)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccccc--CCCHHHHHHHH------HHcCCeE
Confidence 9999999999999998764322 223344444443 58999999999986432 11111111111 1123579
Q ss_pred EEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 247 IYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 247 i~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
+++||++|. |+.++++.+.+.+
T Consensus 142 ~~~Sa~~~~----------gi~~l~~~l~~~~ 163 (164)
T cd04101 142 FKTSALRGV----------GYEEPFESLARAF 163 (164)
T ss_pred EEEeCCCCC----------ChHHHHHHHHHHh
Confidence 999999999 9999999988754
No 209
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.68 E-value=3.5e-16 Score=150.15 Aligned_cols=143 Identities=21% Similarity=0.282 Sum_probs=99.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCc----cch
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH----SDF 165 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh----~df 165 (681)
++|+++|++++|||||+++|.+.... . . ....+.+... .+|||||. .++
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~~-~-------------------~-----~~~~v~~~~~--~~iDtpG~~~~~~~~ 54 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYTL-A-------------------R-----KTQAVEFNDK--GDIDTPGEYFSHPRW 54 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCcc-C-------------------c-----cceEEEECCC--CcccCCccccCCHHH
Confidence 47999999999999999998653210 0 0 0111222222 37999996 456
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCce
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~p 245 (681)
..++..+++.+|++|+|+|++++........+.. ..+.|+++++||+|+...+ .+++.+++.+++. ..|
T Consensus 55 ~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~----~~~~~~~~~~~~~-----~~p 123 (158)
T PRK15467 55 YHALITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDAD----VAATRKLLLETGF-----EEP 123 (158)
T ss_pred HHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCccc----HHHHHHHHHHcCC-----CCC
Confidence 6666677899999999999998755444333322 2468999999999986543 2334444443322 248
Q ss_pred EEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 246 vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
++++||++|. |+..|++.+.+.++.
T Consensus 124 ~~~~Sa~~g~----------gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 124 IFELNSHDPQ----------SVQQLVDYLASLTKQ 148 (158)
T ss_pred EEEEECCCcc----------CHHHHHHHHHHhchh
Confidence 9999999999 999999999887753
No 210
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.67 E-value=4e-16 Score=150.12 Aligned_cols=156 Identities=19% Similarity=0.220 Sum_probs=101.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc-hhHHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD-FGGEV 169 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d-f~~e~ 169 (681)
+|+++|++|+|||||+++++..........+. + +.......+.++...++||||||+.. +....
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~--------------~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 65 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNL--------------E-SLYSRQVTIDGEQVSLEILDTAGQQQADTEQL 65 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCCh--------------H-HhceEEEEECCEEEEEEEEECCCCcccccchH
Confidence 58999999999999999998654321111111 0 11222333444456789999999985 45667
Q ss_pred HHHHhhcceEEEEeeCCCCCchh-hHHHHHHHHH-----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 170 ERILNMVEGVLLVVDSVEGPMPQ-TRFVLKKALE-----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~q-t~~~l~~~~~-----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
..+++.+|++|+|+|+++...-+ ...++..+.. .++|+++|+||+|+...+.- ..++....... ..
T Consensus 66 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~~-------~~ 137 (165)
T cd04146 66 ERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQV-STEEGEKLASE-------LG 137 (165)
T ss_pred HHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCcc-CHHHHHHHHHH-------cC
Confidence 88899999999999998753322 2223333332 36899999999998543211 11222222211 23
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.+++++||++|.+ |+..+|+.+.+.+
T Consensus 138 ~~~~e~Sa~~~~~---------~v~~~f~~l~~~~ 163 (165)
T cd04146 138 CLFFEVSAAEDYD---------GVHSVFHELCREV 163 (165)
T ss_pred CEEEEeCCCCCch---------hHHHHHHHHHHHH
Confidence 5799999999841 7899999988654
No 211
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=4e-16 Score=141.47 Aligned_cols=162 Identities=21% Similarity=0.237 Sum_probs=122.4
Q ss_pred cCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc
Q 005713 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (681)
Q Consensus 85 ~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d 164 (681)
+.+-.++|+++|..|+|||.|+.++....+......++ |+.+..+...+..+..+++||||+|+++
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgati--------------gvdfmiktvev~gekiklqiwdtagqer 68 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATI--------------GVDFMIKTVEVNGEKIKLQIWDTAGQER 68 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCcee--------------eeeEEEEEEEECCeEEEEEEeeccchHH
Confidence 34567899999999999999999998776655444444 7777788888888889999999999999
Q ss_pred hhHHHHHHHhhcceEEEEeeCCCCCc----hhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 165 FGGEVERILNMVEGVLLVVDSVEGPM----PQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 165 f~~e~~~~l~~aD~~llVvDa~~g~~----~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
|...+.++++.|+.+|||+|.+.-+. +.+..-++......+--|+|.||+|+.+.+ ++-.++-+.|.+..
T Consensus 69 frsitqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drr--evp~qigeefs~~q---- 142 (213)
T KOG0095|consen 69 FRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRR--EVPQQIGEEFSEAQ---- 142 (213)
T ss_pred HHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhh--hhhHHHHHHHHHhh----
Confidence 99999999999999999999776432 333333333333456679999999986543 55556655554321
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
+.-++.+||+... +++.||..+.-.+
T Consensus 143 --dmyfletsakea~----------nve~lf~~~a~rl 168 (213)
T KOG0095|consen 143 --DMYFLETSAKEAD----------NVEKLFLDLACRL 168 (213)
T ss_pred --hhhhhhhcccchh----------hHHHHHHHHHHHH
Confidence 2237899999988 8888888776544
No 212
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.67 E-value=1.1e-15 Score=150.09 Aligned_cols=155 Identities=20% Similarity=0.233 Sum_probs=107.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
..+|+++|+.++|||||+.++....... ...+ .|..+ ..+...+..+++|||||+..|...
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T--------------~~~~~----~~~~~~~~~~~l~D~~G~~~~~~~ 77 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-TIPT--------------IGFNV----ETVEYKNLKFTMWDVGGQDKLRPL 77 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCc--------------cccce----EEEEECCEEEEEEECCCCHhHHHH
Confidence 4789999999999999999996543321 1111 12222 235567899999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCC-chhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcc-cccC
Q 005713 169 VERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT-DEQC 242 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~-~~~~ 242 (681)
+..+++.+|++|+|+|+++.. .......+..... ...|+++|+||.|+.+... ..++.. .++.. ....
T Consensus 78 ~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~i~~---~l~~~~~~~~ 151 (182)
T PTZ00133 78 WRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMS---TTEVTE---KLGLHSVRQR 151 (182)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCC---HHHHHH---HhCCCcccCC
Confidence 999999999999999987621 2233334443322 2579999999999865321 122222 22221 1122
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.++++.+||++|. |+.++++.|.+.+
T Consensus 152 ~~~~~~~Sa~tg~----------gv~e~~~~l~~~i 177 (182)
T PTZ00133 152 NWYIQGCCATTAQ----------GLYEGLDWLSANI 177 (182)
T ss_pred cEEEEeeeCCCCC----------CHHHHHHHHHHHH
Confidence 4567889999999 9999999998755
No 213
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.67 E-value=7.3e-16 Score=150.94 Aligned_cols=157 Identities=17% Similarity=0.141 Sum_probs=105.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|..++|||||+.+++...+......++ +... .....+..+...++||||||++.|....
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~--------------~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~ 66 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTV--------------FENY-TASFEIDEQRIELSLWDTSGSPYYDNVR 66 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCce--------------EEEE-EEEEEECCEEEEEEEEECCCchhhhhcc
Confidence 479999999999999999999875543222222 1111 1122233344788999999999998888
Q ss_pred HHHHhhcceEEEEeeCCCCCchhh--HHHHHHHHHc--CCEEEEEEeecCCCCCC----------c-ccchhhHHHHHHH
Q 005713 170 ERILNMVEGVLLVVDSVEGPMPQT--RFVLKKALEF--GHAVVVVVNKIDRPSAR----------P-DYVINSTFELFIE 234 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~qt--~~~l~~~~~~--gip~ivviNKiD~~~~~----------~-~~~~~ei~~~~~~ 234 (681)
..+++.+|++|+|+|.++...-+. ..|+..+.+. +.|+++|+||+|+.+.. . .-..++..++..+
T Consensus 67 ~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~ 146 (178)
T cd04131 67 PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQ 146 (178)
T ss_pred hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 889999999999999887443332 2444444443 68999999999985420 0 0111222222222
Q ss_pred hhcccccCCceEEEeecccCCCCCCCCCCCCC-cchhHHHHHhh
Q 005713 235 LNATDEQCDFQAIYASGIQGKAGLSPDNLADD-LGPLFESIMRC 277 (681)
Q Consensus 235 l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~g-i~~Ll~~I~~~ 277 (681)
+++ .+++++||++|. + +.++|+.+++.
T Consensus 147 ~~~------~~~~E~SA~~~~----------~~v~~~F~~~~~~ 174 (178)
T cd04131 147 LGA------EIYLECSAFTSE----------KSVRDIFHVATMA 174 (178)
T ss_pred hCC------CEEEECccCcCC----------cCHHHHHHHHHHH
Confidence 221 368999999998 5 89999888763
No 214
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=6.4e-16 Score=145.84 Aligned_cols=160 Identities=18% Similarity=0.198 Sum_probs=122.3
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
....++.++|..|+|||+|+.+++.+.+......+. |+........+..+..+++||||+||+.|.
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~Ti--------------Gvefg~r~~~id~k~IKlqiwDtaGqe~fr 69 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTI--------------GVEFGARMVTIDGKQIKLQIWDTAGQESFR 69 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCcccccccee--------------eeeeceeEEEEcCceEEEEEEecCCcHHHH
Confidence 456789999999999999999999988876655554 777777778888888999999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCC-CchhhHHHHHHHHHc---CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 167 GEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g-~~~qt~~~l~~~~~~---gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
..+.++++.+-++|||+|.... .+.....||..++.+ ++.++++.||+|+...+ +-..++-....++ .
T Consensus 70 sv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR-~Vs~EEGeaFA~e-------h 141 (216)
T KOG0098|consen 70 SVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARR-EVSKEEGEAFARE-------H 141 (216)
T ss_pred HHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccc-cccHHHHHHHHHH-------c
Confidence 9999999999999999997763 333444555555555 57789999999997654 2222333332222 3
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.++++.+||+++. ++++.|..+...+
T Consensus 142 gLifmETSakt~~----------~VEEaF~nta~~I 167 (216)
T KOG0098|consen 142 GLIFMETSAKTAE----------NVEEAFINTAKEI 167 (216)
T ss_pred Cceeehhhhhhhh----------hHHHHHHHHHHHH
Confidence 4578899999999 7777776665544
No 215
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.67 E-value=7.4e-16 Score=149.44 Aligned_cols=161 Identities=14% Similarity=0.042 Sum_probs=107.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCc-cccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKV-FRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~-~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
+..+|+++|..|+|||||+++++...+. .....+. |.........+......+++|||+|...|.
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~--------------~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~ 68 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTI--------------KPRYAVNTVEVYGQEKYLILREVGEDEVAI 68 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCcc--------------CcceEEEEEEECCeEEEEEEEecCCccccc
Confidence 5789999999999999999999986654 2222222 222222223333333678999999999998
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCch-hhHHHHHHHHH-cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCc
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALE-FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~~-~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~ 244 (681)
.....+++.+|++|+|+|+++...- ....++..... .++|+++|+||+|+.+... ....+..++...++..
T Consensus 69 ~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~------ 141 (169)
T cd01892 69 LLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQ-RYEVQPDEFCRKLGLP------ 141 (169)
T ss_pred ccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccccccc-ccccCHHHHHHHcCCC------
Confidence 8888889999999999999774221 12233433322 3689999999999864321 1112222222222211
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
+++++||++|. |+..+|+.+.+.+-
T Consensus 142 ~~~~~Sa~~~~----------~v~~lf~~l~~~~~ 166 (169)
T cd01892 142 PPLHFSSKLGD----------SSNELFTKLATAAQ 166 (169)
T ss_pred CCEEEEeccCc----------cHHHHHHHHHHHhh
Confidence 35899999998 89999999987653
No 216
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.67 E-value=4.4e-16 Score=173.50 Aligned_cols=148 Identities=24% Similarity=0.266 Sum_probs=112.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
..+|+++|++|+|||||+++|++....+... ..|+|.+.....+.+++..++||||||+.++...
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~---------------~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ 279 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTD---------------IAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDE 279 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCC---------------CCCcccccEEEEEEECCeEEEEEeCCCCCCCccH
Confidence 4689999999999999999998754322111 1266777777778888999999999999876543
Q ss_pred H--------HHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 169 V--------ERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 169 ~--------~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
+ ...+..+|++|+|+|++++...+....|.. ..+.|+++|+||+|+....... .
T Consensus 280 ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~~~----------------~ 341 (449)
T PRK05291 280 VEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEIDLE----------------E 341 (449)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccchhh----------------h
Confidence 2 345788999999999988766665555554 4578999999999986532110 1
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
....+++++||++|. |++.|++.|.+.++
T Consensus 342 ~~~~~~i~iSAktg~----------GI~~L~~~L~~~l~ 370 (449)
T PRK05291 342 ENGKPVIRISAKTGE----------GIDELREAIKELAF 370 (449)
T ss_pred ccCCceEEEEeeCCC----------CHHHHHHHHHHHHh
Confidence 123478999999999 99999999988774
No 217
>PRK04213 GTP-binding protein; Provisional
Probab=99.67 E-value=1.6e-15 Score=151.10 Aligned_cols=159 Identities=23% Similarity=0.292 Sum_probs=103.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCc-----
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH----- 162 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh----- 162 (681)
...+|+++|.+|+|||||+++|.+...... ...|+|..... +.+. .+++|||||+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~----------------~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~~~~ 67 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVG----------------KRPGVTRKPNH--YDWG--DFILTDLPGFGFMSG 67 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccC----------------CCCceeeCceE--Eeec--ceEEEeCCccccccc
Confidence 457899999999999999999986532211 12256654432 3333 6899999995
Q ss_pred ------cchhHHHHHHH----hhcceEEEEeeCCCC-----------CchhhHHHHHHHHHcCCEEEEEEeecCCCCCCc
Q 005713 163 ------SDFGGEVERIL----NMVEGVLLVVDSVEG-----------PMPQTRFVLKKALEFGHAVVVVVNKIDRPSARP 221 (681)
Q Consensus 163 ------~df~~e~~~~l----~~aD~~llVvDa~~g-----------~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~ 221 (681)
..|...+..++ ..+|++++|+|+... ....+.+++..+...++|+++|+||+|+.+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~- 146 (201)
T PRK04213 68 VPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR- 146 (201)
T ss_pred cCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH-
Confidence 33443333333 356889999998642 22345666777777899999999999986543
Q ss_pred ccchhhHHHHHHHhhcc--cccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 222 DYVINSTFELFIELNAT--DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 222 ~~~~~ei~~~~~~l~~~--~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
.+..+++.+ .++.. ......+++++||++| | +..+++.|.+.++.-
T Consensus 147 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~SA~~g-g----------i~~l~~~l~~~~~~~ 194 (201)
T PRK04213 147 DEVLDEIAE---RLGLYPPWRQWQDIIAPISAKKG-G----------IEELKEAIRKRLHEA 194 (201)
T ss_pred HHHHHHHHH---HhcCCccccccCCcEEEEecccC-C----------HHHHHHHHHHhhcCc
Confidence 222233322 22221 0111247899999998 4 578899998887643
No 218
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.67 E-value=1e-15 Score=150.53 Aligned_cols=159 Identities=13% Similarity=0.039 Sum_probs=104.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEe-eCCeEEEEEeCCCccchhHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT-YNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~-~~~~~i~iiDTPGh~df~~e 168 (681)
.+|+++|..++|||||+++|+..........+. +..+ ....... .....+.||||||+.+|...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~--------------~~~~-~~~i~~~~~~~~~l~i~Dt~G~~~~~~~ 65 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTV--------------FENY-VTNIQGPNGKIIELALWDTAGQEEYDRL 65 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCee--------------eeee-EEEEEecCCcEEEEEEEECCCchhHHHH
Confidence 379999999999999999999765432222221 1111 1111111 22467899999999999888
Q ss_pred HHHHHhhcceEEEEeeCCCCCchhhH-H-HHHHHHH--cCCEEEEEEeecCCCCCCcc-c--chhhHHHHHHHhhccccc
Q 005713 169 VERILNMVEGVLLVVDSVEGPMPQTR-F-VLKKALE--FGHAVVVVVNKIDRPSARPD-Y--VINSTFELFIELNATDEQ 241 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~~~qt~-~-~l~~~~~--~gip~ivviNKiD~~~~~~~-~--~~~ei~~~~~~l~~~~~~ 241 (681)
...+++.+|++|+|+|+++...-+.. . ++..... .++|+|+|+||+|+...... . ...+...+....+
T Consensus 66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~----- 140 (187)
T cd04132 66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQG----- 140 (187)
T ss_pred HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcC-----
Confidence 88889999999999998874332222 2 2333332 36899999999998643211 1 1122222222221
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
..+++++||++|. |+.++|+.+.+.+.
T Consensus 141 -~~~~~e~Sa~~~~----------~v~~~f~~l~~~~~ 167 (187)
T cd04132 141 -AFAYLECSAKTME----------NVEEVFDTAIEEAL 167 (187)
T ss_pred -CcEEEEccCCCCC----------CHHHHHHHHHHHHH
Confidence 1278999999999 88999998887654
No 219
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.67 E-value=4.5e-16 Score=146.19 Aligned_cols=149 Identities=28% Similarity=0.308 Sum_probs=103.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCccchhH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDFGG 167 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 167 (681)
.||+++|++|+|||||+++|+....... ...+++.......+.+++ +.+.+|||||+.+|..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 65 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITE----------------YKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRA 65 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCc----------------CCCCceeeeeEEEEEECCEEEEEEEEECCCcccchH
Confidence 5899999999999999999987652111 112555555555566677 7899999999999988
Q ss_pred HHHHHHhhcceEEEEeeCCCC-------CchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 168 EVERILNMVEGVLLVVDSVEG-------PMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g-------~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
......+.++.++.++|.... ...+...++..+. .+.|+++++||+|+...+ ...+....+..+.
T Consensus 66 ~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~---- 137 (161)
T TIGR00231 66 IRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAK---LKTHVAFLFAKLN---- 137 (161)
T ss_pred HHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcch---hhHHHHHHHhhcc----
Confidence 777777777777777775432 2233333333333 388999999999987543 2333333333322
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHH
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESI 274 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I 274 (681)
..+++++||++|. |+..+++.|
T Consensus 138 --~~~~~~~sa~~~~----------gv~~~~~~l 159 (161)
T TIGR00231 138 --GEPIIPLSAETGK----------NIDSAFKIV 159 (161)
T ss_pred --CCceEEeecCCCC----------CHHHHHHHh
Confidence 2369999999998 888888765
No 220
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.66 E-value=6.4e-16 Score=148.95 Aligned_cols=156 Identities=14% Similarity=0.136 Sum_probs=103.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|..|+|||||+++|+..........+. .........+......+.+|||||+.+|....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~ 65 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTV---------------FDNYSATVTVDGKQVNLGLWDTAGQEEYDRLR 65 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce---------------eeeeEEEEEECCEEEEEEEEeCCCcccccccc
Confidence 379999999999999999999875421111111 11111222233445689999999999887766
Q ss_pred HHHHhhcceEEEEeeCCCCCch--hhHHHHHHHHHc--CCEEEEEEeecCCCCCCccc----------chhhHHHHHHHh
Q 005713 170 ERILNMVEGVLLVVDSVEGPMP--QTRFVLKKALEF--GHAVVVVVNKIDRPSARPDY----------VINSTFELFIEL 235 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~--qt~~~l~~~~~~--gip~ivviNKiD~~~~~~~~----------~~~ei~~~~~~l 235 (681)
...++.+|++++|+|+++.... ....++..+... ++|+++|+||+|+...+... ..++........
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 145 (171)
T cd00157 66 PLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEI 145 (171)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHh
Confidence 7778899999999998873222 122344444433 59999999999987654221 112222222221
Q ss_pred hcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHh
Q 005713 236 NATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (681)
Q Consensus 236 ~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~ 276 (681)
+ ..+++++||++|. |+.++++.|++
T Consensus 146 ~------~~~~~~~Sa~~~~----------gi~~l~~~i~~ 170 (171)
T cd00157 146 G------AIGYMECSALTQE----------GVKEVFEEAIR 170 (171)
T ss_pred C------CeEEEEeecCCCC----------CHHHHHHHHhh
Confidence 1 1379999999999 99999998875
No 221
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.66 E-value=1.1e-15 Score=153.69 Aligned_cols=159 Identities=21% Similarity=0.232 Sum_probs=107.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEe-eCCeEEEEEeCCCccchhH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT-YNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~-~~~~~i~iiDTPGh~df~~ 167 (681)
..+|+++|..++|||||+++|+..........+. |..+......+. .....++||||||+..|..
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti--------------~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~ 67 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTV--------------GVDFFSRLIEIEPGVRIKLQLWDTAGQERFRS 67 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCcee--------------ceEEEEEEEEECCCCEEEEEEEeCCcchhHHH
Confidence 3689999999999999999999765432222111 222222222222 2236899999999999998
Q ss_pred HHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 168 EVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
....+++.+|++|+|+|.++... .....++..+.. ...|+++|+||+|+...+ ....++...+... .
T Consensus 68 ~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~-~v~~~~~~~~~~~-------~ 139 (211)
T cd04111 68 ITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQR-QVTREEAEKLAKD-------L 139 (211)
T ss_pred HHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccccc-ccCHHHHHHHHHH-------h
Confidence 88899999999999999887422 222334443332 246789999999986532 1112222222222 2
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.++++++||++|. |+.++|+.|.+.+.
T Consensus 140 ~~~~~e~Sak~g~----------~v~e~f~~l~~~~~ 166 (211)
T cd04111 140 GMKYIETSARTGD----------NVEEAFELLTQEIY 166 (211)
T ss_pred CCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 3679999999999 89999999887663
No 222
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.66 E-value=1.1e-15 Score=157.42 Aligned_cols=161 Identities=18% Similarity=0.171 Sum_probs=109.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|..++|||||+++++...+......+. + ........+....+.++||||+|+.+|....
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi--------------~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~ 65 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTI--------------E-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMR 65 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCh--------------h-HhEEEEEEECCEEEEEEEEECCCChhhhHHH
Confidence 369999999999999999998765432221211 0 1112222333334788999999999998877
Q ss_pred HHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH------------cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhh
Q 005713 170 ERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE------------FGHAVVVVVNKIDRPSARPDYVINSTFELFIELN 236 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~------------~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~ 236 (681)
..++..+|++|||+|.++... .....++..+.+ .++|+|+|+||+|+...+ ....+++...+..
T Consensus 66 ~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~-~v~~~ei~~~~~~-- 142 (247)
T cd04143 66 RLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPR-EVQRDEVEQLVGG-- 142 (247)
T ss_pred HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcc-ccCHHHHHHHHHh--
Confidence 778899999999999887432 222233333322 268999999999986432 1223334333321
Q ss_pred cccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCc
Q 005713 237 ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPR 282 (681)
Q Consensus 237 ~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 282 (681)
...++++++||++|. |++++|+.|....-.|.
T Consensus 143 ----~~~~~~~evSAktg~----------gI~elf~~L~~~~~~p~ 174 (247)
T cd04143 143 ----DENCAYFEVSAKKNS----------NLDEMFRALFSLAKLPN 174 (247)
T ss_pred ----cCCCEEEEEeCCCCC----------CHHHHHHHHHHHhcccc
Confidence 114579999999998 99999999998775554
No 223
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.66 E-value=8.2e-16 Score=149.02 Aligned_cols=156 Identities=14% Similarity=0.141 Sum_probs=102.7
Q ss_pred EEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHHH
Q 005713 92 IAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVER 171 (681)
Q Consensus 92 V~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~~ 171 (681)
|+|+|..++|||||+++++...+......+. + ........+......+.||||||+.+|......
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 65 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTV--------------F-ENYSADVEVDGKPVELGLWDTAGQEDYDRLRPL 65 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcE--------------E-eeeeEEEEECCEEEEEEEEECCCCcccchhchh
Confidence 5899999999999999999865532222211 0 111112222233457899999999999888888
Q ss_pred HHhhcceEEEEeeCCCCCchhh--HHHHHHHHHc--CCEEEEEEeecCCCCCCc--c---------cchhhHHHHHHHhh
Q 005713 172 ILNMVEGVLLVVDSVEGPMPQT--RFVLKKALEF--GHAVVVVVNKIDRPSARP--D---------YVINSTFELFIELN 236 (681)
Q Consensus 172 ~l~~aD~~llVvDa~~g~~~qt--~~~l~~~~~~--gip~ivviNKiD~~~~~~--~---------~~~~ei~~~~~~l~ 236 (681)
.++.+|++|+|+|.++...-+. ..++..+... ++|+++|+||+|+..... . -..++...+....+
T Consensus 66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 145 (174)
T smart00174 66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIG 145 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcC
Confidence 8999999999999876422221 1244444433 789999999999864221 0 00111112222211
Q ss_pred cccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 237 ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 237 ~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
..+++++||++|. |+.++|+.+.+.+
T Consensus 146 ------~~~~~e~Sa~~~~----------~v~~lf~~l~~~~ 171 (174)
T smart00174 146 ------AVKYLECSALTQE----------GVREVFEEAIRAA 171 (174)
T ss_pred ------CcEEEEecCCCCC----------CHHHHHHHHHHHh
Confidence 1378999999999 9999999998765
No 224
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.66 E-value=8.4e-16 Score=150.04 Aligned_cols=156 Identities=21% Similarity=0.230 Sum_probs=105.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
++|+++|++|+|||||+++|+..........+. +... .....+...++.+.||||||+.+|....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 66 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTI--------------ENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILP 66 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcch--------------hhhE-EEEEEECCEEEEEEEEECCChHhhHHHH
Confidence 689999999999999999999765432221111 0000 1111122223678999999999999888
Q ss_pred HHHHhhcceEEEEeeCCCCCchhh-HHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCc
Q 005713 170 ERILNMVEGVLLVVDSVEGPMPQT-RFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~qt-~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~ 244 (681)
..++..+|++++|+|.++....+. ..++..+.. .++|+++|+||+|+...+. ....++..+... ...
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~-------~~~ 138 (180)
T cd04137 67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQ-VSTEEGKELAES-------WGA 138 (180)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCc-cCHHHHHHHHHH-------cCC
Confidence 899999999999999887543322 233344333 3679999999999864221 111222222222 235
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
+++++||++|. |+.+++..+.+.+
T Consensus 139 ~~~~~Sa~~~~----------gv~~l~~~l~~~~ 162 (180)
T cd04137 139 AFLESSARENE----------NVEEAFELLIEEI 162 (180)
T ss_pred eEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 79999999998 8899999888765
No 225
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.66 E-value=2.3e-15 Score=145.71 Aligned_cols=155 Identities=21% Similarity=0.270 Sum_probs=106.9
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
.+..+|+++|+.|+|||||+++|.+....... ...|+++ ..+.+.+..+.+|||||+..|.
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~---------------~t~g~~~----~~i~~~~~~~~~~D~~G~~~~~ 72 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHIT---------------PTQGFNI----KTVQSDGFKLNVWDIGGQRAIR 72 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcccC---------------CCCCcce----EEEEECCEEEEEEECCCCHHHH
Confidence 34678999999999999999999865321110 0113322 2455668899999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCC-chhhHHHHHHH----HHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccc-c
Q 005713 167 GEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKA----LEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD-E 240 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~----~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~-~ 240 (681)
..+..+++.+|++++|+|+.+.. .......+... ...++|+++++||+|+..... .+++.+ .++... .
T Consensus 73 ~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~i~~---~l~~~~~~ 146 (173)
T cd04155 73 PYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP---AEEIAE---ALNLHDLR 146 (173)
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC---HHHHHH---HcCCcccC
Confidence 99999999999999999987632 22233333333 234689999999999865321 222222 222211 1
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHh
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~ 276 (681)
...++++++||++|. |+++++++|++
T Consensus 147 ~~~~~~~~~Sa~~~~----------gi~~~~~~l~~ 172 (173)
T cd04155 147 DRTWHIQACSAKTGE----------GLQEGMNWVCK 172 (173)
T ss_pred CCeEEEEEeECCCCC----------CHHHHHHHHhc
Confidence 123568899999999 99999998864
No 226
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.66 E-value=4.5e-16 Score=146.68 Aligned_cols=164 Identities=18% Similarity=0.212 Sum_probs=121.7
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
....+|.|+|.+|+|||||++++.+..+......++ |..+..+...+..+-..++||||+|+++|.
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTI--------------gadFltKev~Vd~~~vtlQiWDTAGQERFq 72 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATI--------------GADFLTKEVQVDDRSVTLQIWDTAGQERFQ 72 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhcccc--------------chhheeeEEEEcCeEEEEEEEecccHHHhh
Confidence 357899999999999999999999987765555554 666667777777666789999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchhh-----HHHHHHHHHc---CCEEEEEEeecCCCCCC-cccchhhHHHHHHHhhc
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQT-----RFVLKKALEF---GHAVVVVVNKIDRPSAR-PDYVINSTFELFIELNA 237 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~qt-----~~~l~~~~~~---gip~ivviNKiD~~~~~-~~~~~~ei~~~~~~l~~ 237 (681)
..-...++.+|+++||+|....-.-.. .+.+.++... ..|+||++||+|..+.. ........+...
T Consensus 73 sLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC----- 147 (210)
T KOG0394|consen 73 SLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWC----- 147 (210)
T ss_pred hcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHH-----
Confidence 888888999999999999776333333 3444444322 36899999999987632 222233333332
Q ss_pred ccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 238 TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 238 ~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
.+..++|+|++|||.+. ++...|+.+....-.
T Consensus 148 -~s~gnipyfEtSAK~~~----------NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 148 -KSKGNIPYFETSAKEAT----------NVDEAFEEIARRALA 179 (210)
T ss_pred -HhcCCceeEEecccccc----------cHHHHHHHHHHHHHh
Confidence 23447899999999999 888888888765543
No 227
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.65 E-value=1.6e-15 Score=154.23 Aligned_cols=159 Identities=13% Similarity=0.131 Sum_probs=107.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
..+|+++|..++|||||+.+++...+......++ |.... ....+....+.++||||+|+++|...
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi--------------~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~ 77 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV--------------FENYT-AGLETEEQRVELSLWDTSGSPYYDNV 77 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCce--------------eeeeE-EEEEECCEEEEEEEEeCCCchhhHHH
Confidence 4689999999999999999999876543333332 11111 11223334578999999999999988
Q ss_pred HHHHHhhcceEEEEeeCCCCCchhh--HHHHHHHHHc--CCEEEEEEeecCCCCCC-----------cccchhhHHHHHH
Q 005713 169 VERILNMVEGVLLVVDSVEGPMPQT--RFVLKKALEF--GHAVVVVVNKIDRPSAR-----------PDYVINSTFELFI 233 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~~~qt--~~~l~~~~~~--gip~ivviNKiD~~~~~-----------~~~~~~ei~~~~~ 233 (681)
...+++.+|++|||+|.++...-+. ..|+..+... +.|+|+|+||+|+.... ..-..++..++..
T Consensus 78 ~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~ 157 (232)
T cd04174 78 RPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAK 157 (232)
T ss_pred HHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHH
Confidence 8889999999999999987543332 3444545432 68999999999985321 0111223333332
Q ss_pred HhhcccccCCc-eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 234 ELNATDEQCDF-QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 234 ~l~~~~~~~~~-pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
++ .+ +++++||++|.+ ++.++|+.++..+
T Consensus 158 ~~-------~~~~~~EtSAktg~~---------~V~e~F~~~~~~~ 187 (232)
T cd04174 158 QL-------GAEVYLECSAFTSEK---------SIHSIFRSASLLC 187 (232)
T ss_pred Hc-------CCCEEEEccCCcCCc---------CHHHHHHHHHHHH
Confidence 22 34 589999999961 5888888876543
No 228
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.65 E-value=1.2e-15 Score=148.31 Aligned_cols=155 Identities=14% Similarity=0.127 Sum_probs=102.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|..|+|||||+.+++...+......+ +.........+......+.||||||+..|....
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t---------------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 65 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPT---------------AFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLR 65 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCc---------------eeeeeeEEEEECCEEEEEEEEECCCChhhcccc
Confidence 36899999999999999999876543322222 111112222333334678999999999998877
Q ss_pred HHHHhhcceEEEEeeCCCCCchhh--HHHHHHHHH--cCCEEEEEEeecCCCCCC---------cc-c-chhhHHHHHHH
Q 005713 170 ERILNMVEGVLLVVDSVEGPMPQT--RFVLKKALE--FGHAVVVVVNKIDRPSAR---------PD-Y-VINSTFELFIE 234 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~qt--~~~l~~~~~--~gip~ivviNKiD~~~~~---------~~-~-~~~ei~~~~~~ 234 (681)
..+++.+|++|+|+|.++...-+. ..++..+.. .+.|+++|+||+|+.... .+ . ..++...+...
T Consensus 66 ~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~ 145 (173)
T cd04130 66 PLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEK 145 (173)
T ss_pred ccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHH
Confidence 788899999999999887433222 234444444 368999999999986421 01 1 11122222221
Q ss_pred hhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHH
Q 005713 235 LNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIM 275 (681)
Q Consensus 235 l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~ 275 (681)
.+ ..+++++||++|. |+.++++.++
T Consensus 146 ~~------~~~~~e~Sa~~~~----------~v~~lf~~~~ 170 (173)
T cd04130 146 IG------ACEYIECSALTQK----------NLKEVFDTAI 170 (173)
T ss_pred hC------CCeEEEEeCCCCC----------CHHHHHHHHH
Confidence 11 1379999999999 8999998875
No 229
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.65 E-value=9.4e-16 Score=143.70 Aligned_cols=136 Identities=24% Similarity=0.240 Sum_probs=91.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCcc----chh
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS----DFG 166 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~----df~ 166 (681)
+|+++|++|+|||||+++|+..... . ..|+ .+.+.. .+|||||+. .+.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~------------------~~t~-----~~~~~~---~~iDt~G~~~~~~~~~ 53 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--Y------------------KKTQ-----AVEYND---GAIDTPGEYVENRRLY 53 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--c------------------ccce-----eEEEcC---eeecCchhhhhhHHHH
Confidence 7999999999999999999765321 0 0011 123332 689999983 233
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceE
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQA 246 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pv 246 (681)
..+...++.+|++|+|+|++++...+...++.. .+.|+++|+||+|+.+.. ...+++.+.+...+ ..|+
T Consensus 54 ~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~------~~~~ 122 (142)
T TIGR02528 54 SALIVTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEAD--VDIERAKELLETAG------AEPI 122 (142)
T ss_pred HHHHHHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCcc--cCHHHHHHHHHHcC------CCcE
Confidence 333345789999999999988776655444332 245999999999986421 22333333333222 1268
Q ss_pred EEeecccCCCCCCCCCCCCCcchhHHHHH
Q 005713 247 IYASGIQGKAGLSPDNLADDLGPLFESIM 275 (681)
Q Consensus 247 i~~SA~~G~~~~~~~~~~~gi~~Ll~~I~ 275 (681)
+++||++|. |+.++++.+.
T Consensus 123 ~~~Sa~~~~----------gi~~l~~~l~ 141 (142)
T TIGR02528 123 FEISSVDEQ----------GLEALVDYLN 141 (142)
T ss_pred EEEecCCCC----------CHHHHHHHHh
Confidence 999999998 8888888763
No 230
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1.1e-15 Score=138.62 Aligned_cols=162 Identities=19% Similarity=0.153 Sum_probs=122.9
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
+...++.|+|...+|||||+-+.+..++......++ ||.+..+...-..+..+++||||.|++.+.
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTv--------------GidFKvKTvyr~~kRiklQiwDTagqEryr 84 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV--------------GIDFKVKTVYRSDKRIKLQIWDTAGQERYR 84 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeee--------------eeeEEEeEeeecccEEEEEEEecccchhhh
Confidence 356799999999999999999999988876655555 888887766555667899999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHH---HcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKAL---EFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~---~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
..+..+++.+++.||++|.+.... .....+.-+.. ..+.|+|+|.||||+.+.+. -..+..+.+..+++.
T Consensus 85 tiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRv-is~e~g~~l~~~LGf----- 158 (193)
T KOG0093|consen 85 TITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERV-ISHERGRQLADQLGF----- 158 (193)
T ss_pred HHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCcccee-eeHHHHHHHHHHhCh-----
Confidence 999999999999999999776332 22223333333 34799999999999976552 122334444444444
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
.+|++||+.+. ++..+|+.+++.+..
T Consensus 159 --efFEtSaK~Ni----------nVk~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 159 --EFFETSAKENI----------NVKQVFERLVDIICD 184 (193)
T ss_pred --HHhhhcccccc----------cHHHHHHHHHHHHHH
Confidence 58999999998 888888888776643
No 231
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.64 E-value=3.5e-15 Score=140.14 Aligned_cols=154 Identities=24% Similarity=0.316 Sum_probs=108.6
Q ss_pred EEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC-CeEEEEEeCCCccchhH-----
Q 005713 94 IIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN-DTKINIIDTPGHSDFGG----- 167 (681)
Q Consensus 94 IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-~~~i~iiDTPGh~df~~----- 167 (681)
++|++|+|||||+++|++...... ....+.|.......+.+. ...+.||||||+.++..
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~ 65 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIV---------------SPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRER 65 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcccccc---------------CCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhH
Confidence 589999999999999987533211 112244555555555554 67999999999877653
Q ss_pred --HHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCce
Q 005713 168 --EVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (681)
Q Consensus 168 --e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~p 245 (681)
.....++.+|++++|+|+..........++......+.|+++|+||+|+...+.. . +........ .......|
T Consensus 66 ~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~--~-~~~~~~~~~--~~~~~~~~ 140 (163)
T cd00880 66 EELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEE--E-ELLELRLLI--LLLLLGLP 140 (163)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhH--H-HHHHHHHhh--cccccCCc
Confidence 4455788999999999999987776666677777789999999999998754311 1 111000111 11223568
Q ss_pred EEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 246 vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
++++||+++. |+..+++.+.+.
T Consensus 141 ~~~~sa~~~~----------~v~~l~~~l~~~ 162 (163)
T cd00880 141 VIAVSALTGE----------GIDELREALIEA 162 (163)
T ss_pred eEEEeeeccC----------CHHHHHHHHHhh
Confidence 9999999998 899999988765
No 232
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.64 E-value=1e-15 Score=130.65 Aligned_cols=83 Identities=23% Similarity=0.338 Sum_probs=77.5
Q ss_pred eEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEeccccccc
Q 005713 289 LQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQI 368 (681)
Q Consensus 289 ~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~ 368 (681)
|.++|||+.++++.|+++++||++|+|++||.|++...+... +|.+|+.+.|.++.++++|.|||||++.|++++.+
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~~~~---~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~ 77 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTGKKE---RISRLLQPFADQYQEIPSLSAGNIGVITGLKQTRT 77 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCCCEE---EeeEEEEEECCCceECCeeCCCCEEEEECCCCccc
Confidence 578999999999999999999999999999999998776544 89999999999999999999999999999999999
Q ss_pred CCeeec
Q 005713 369 GETIAD 374 (681)
Q Consensus 369 Gdtl~~ 374 (681)
|||||.
T Consensus 78 Gdtl~~ 83 (83)
T cd04092 78 GDTLVT 83 (83)
T ss_pred CCEEeC
Confidence 999974
No 233
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.64 E-value=2.1e-15 Score=146.35 Aligned_cols=158 Identities=14% Similarity=0.088 Sum_probs=101.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
++|+++|+.++|||||+++|++..+......+. +..+ .....+......+.||||||+.+|....
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 66 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV--------------FENY-VADIEVDGKQVELALWDTAGQEDYDRLR 66 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc--------------ccce-EEEEEECCEEEEEEEEeCCCchhhhhcc
Confidence 589999999999999999999865432222211 1111 1122233334678999999999988777
Q ss_pred HHHHhhcceEEEEeeCCCCCc-hhhHH-HHHHHHH--cCCEEEEEEeecCCCCCCc-c-cc---------hhhHHHHHHH
Q 005713 170 ERILNMVEGVLLVVDSVEGPM-PQTRF-VLKKALE--FGHAVVVVVNKIDRPSARP-D-YV---------INSTFELFIE 234 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~-~qt~~-~l~~~~~--~gip~ivviNKiD~~~~~~-~-~~---------~~ei~~~~~~ 234 (681)
...+..+|++++|+|..+... ..... ++..+.. .++|+++|+||+|+..... . .+ ..+.+.....
T Consensus 67 ~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~ 146 (175)
T cd01870 67 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANK 146 (175)
T ss_pred ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHH
Confidence 778889999999999875322 11112 2333333 3789999999999864321 0 00 0111111111
Q ss_pred hhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 235 LNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 235 l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
+ ..++++++||++|. |+.++|+.+.+..
T Consensus 147 ~------~~~~~~~~Sa~~~~----------~v~~lf~~l~~~~ 174 (175)
T cd01870 147 I------GAFGYMECSAKTKE----------GVREVFEMATRAA 174 (175)
T ss_pred c------CCcEEEEeccccCc----------CHHHHHHHHHHHh
Confidence 1 13479999999998 9999999988653
No 234
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.64 E-value=3.2e-15 Score=165.79 Aligned_cols=150 Identities=20% Similarity=0.228 Sum_probs=110.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
...+|+++|++|+|||||+++|++....+.... .|+|.+.....+.+++..++||||||+.++..
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~---------------pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~ 266 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDI---------------KGTTRDVVEGDFELNGILIKLLDTAGIREHAD 266 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCC---------------CCcEEEEEEEEEEECCEEEEEeeCCCcccchh
Confidence 456899999999999999999998644322111 26777777778888999999999999976654
Q ss_pred HH--------HHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccc
Q 005713 168 EV--------ERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (681)
Q Consensus 168 e~--------~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~ 239 (681)
.+ ..+++.+|++|+|+|++++...+.. ++..+...+.|+++|+||+|+...+ ...+..
T Consensus 267 ~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~~-------~~~~~~------ 332 (442)
T TIGR00450 267 FVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKINS-------LEFFVS------ 332 (442)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCcc-------hhhhhh------
Confidence 33 3567889999999999887655544 6666666789999999999986431 111111
Q ss_pred ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 240 ~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
....|++.+||++ . |+..+++.+.+.+
T Consensus 333 -~~~~~~~~vSak~-~----------gI~~~~~~L~~~i 359 (442)
T TIGR00450 333 -SKVLNSSNLSAKQ-L----------KIKALVDLLTQKI 359 (442)
T ss_pred -hcCCceEEEEEec-C----------CHHHHHHHHHHHH
Confidence 1234789999997 3 6777777776654
No 235
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.3e-15 Score=147.05 Aligned_cols=162 Identities=19% Similarity=0.262 Sum_probs=127.1
Q ss_pred cCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc
Q 005713 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (681)
Q Consensus 85 ~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d 164 (681)
..+..++|+++|.+++|||-|+.++..+.+......++ |+.+......+..+-.+.+||||+|+++
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTI--------------Gvef~t~t~~vd~k~vkaqIWDTAGQER 75 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTI--------------GVEFATRTVNVDGKTVKAQIWDTAGQER 75 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccce--------------eEEEEeeceeecCcEEEEeeecccchhh
Confidence 35578999999999999999999999998887777776 8888888888888889999999999999
Q ss_pred hhHHHHHHHhhcceEEEEeeCCCCC-chhhHHHHHHHHHc---CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 165 FGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 165 f~~e~~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~~---gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
|......+++.|-++|||+|.+... .....+||+.++.+ ++++++|.||+|+...+ .+..+--..|.+
T Consensus 76 yrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lr--aV~te~~k~~Ae------ 147 (222)
T KOG0087|consen 76 YRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLR--AVPTEDGKAFAE------ 147 (222)
T ss_pred hccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhcc--ccchhhhHhHHH------
Confidence 9999999999999999999987643 34556777888876 58999999999987632 222221222221
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.....++++||+.+. ++...|+.++..+
T Consensus 148 ~~~l~f~EtSAl~~t----------NVe~aF~~~l~~I 175 (222)
T KOG0087|consen 148 KEGLFFLETSALDAT----------NVEKAFERVLTEI 175 (222)
T ss_pred hcCceEEEecccccc----------cHHHHHHHHHHHH
Confidence 123469999999998 6676666665543
No 236
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.63 E-value=2.9e-15 Score=175.62 Aligned_cols=154 Identities=19% Similarity=0.250 Sum_probs=114.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
..+|+++|++|+|||||+|+|++..... .+ ..|+|+..+...+.+++.++++|||||+.+|...
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~v------gn----------~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~ 66 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRV------GN----------WAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTI 66 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcc------CC----------CCCceEeeEEEEEEcCceEEEEEECCCccccccc
Confidence 3679999999999999999997643211 11 1388998888889999999999999999887532
Q ss_pred ----------HHHHH--hhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhh
Q 005713 169 ----------VERIL--NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN 236 (681)
Q Consensus 169 ----------~~~~l--~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~ 236 (681)
...++ ..+|++++|+|+++. .+...++.++.+.++|+++|+||+|+.+.+ ....++..+-+
T Consensus 67 ~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~l--er~l~l~~ql~e~giPvIvVlNK~Dl~~~~--~i~id~~~L~~--- 139 (772)
T PRK09554 67 SSQTSLDEQIACHYILSGDADLLINVVDASNL--ERNLYLTLQLLELGIPCIVALNMLDIAEKQ--NIRIDIDALSA--- 139 (772)
T ss_pred cccccHHHHHHHHHHhccCCCEEEEEecCCcc--hhhHHHHHHHHHcCCCEEEEEEchhhhhcc--CcHHHHHHHHH---
Confidence 11222 368999999999874 334556778888999999999999986432 11122222222
Q ss_pred cccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 237 ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 237 ~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.+.+|++++||++|. |++++++.+.+..+
T Consensus 140 ----~LG~pVvpiSA~~g~----------GIdeL~~~I~~~~~ 168 (772)
T PRK09554 140 ----RLGCPVIPLVSTRGR----------GIEALKLAIDRHQA 168 (772)
T ss_pred ----HhCCCEEEEEeecCC----------CHHHHHHHHHHhhh
Confidence 234689999999999 88999988877653
No 237
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.62 E-value=4.8e-15 Score=150.23 Aligned_cols=156 Identities=13% Similarity=0.141 Sum_probs=102.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCc-cccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKV-FRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~-~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
.+|+++|..|+|||||+++|+..... .....+. +.........+......++||||||+.++.
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~--------------~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~-- 64 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASG--------------DDDTYERTVSVDGEESTLVVIDHWEQEMWT-- 64 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCc--------------cccceEEEEEECCEEEEEEEEeCCCcchHH--
Confidence 37999999999999999999765432 1111110 112223333444456789999999998432
Q ss_pred HHHHHh-hcceEEEEeeCCCCCc-hhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 169 VERILN-MVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 169 ~~~~l~-~aD~~llVvDa~~g~~-~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
...+++ .+|++|+|+|+++... .....++..+.. .++|+|+|+||+|+...+. -..++...+.. ..
T Consensus 65 ~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~-v~~~~~~~~a~-------~~ 136 (221)
T cd04148 65 EDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSRE-VSVQEGRACAV-------VF 136 (221)
T ss_pred HhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccce-ecHHHHHHHHH-------Hc
Confidence 234566 8999999999987432 222344444444 3689999999999865431 11122222211 12
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.++++++||++|. |+.++++.+++.+.
T Consensus 137 ~~~~~e~SA~~~~----------gv~~l~~~l~~~~~ 163 (221)
T cd04148 137 DCKFIETSAGLQH----------NVDELLEGIVRQIR 163 (221)
T ss_pred CCeEEEecCCCCC----------CHHHHHHHHHHHHH
Confidence 4579999999999 99999999998774
No 238
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.62 E-value=6.7e-15 Score=140.80 Aligned_cols=156 Identities=22% Similarity=0.318 Sum_probs=110.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~ 170 (681)
+|+++|+.++|||||+++|....+......+. |.........+......+.|||++|+..|.....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTI--------------GIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRD 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTS--------------SEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccc--------------cccccccccccccccccccccccccccccccccc
Confidence 68999999999999999998865543222221 4444444444444557899999999999988888
Q ss_pred HHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceE
Q 005713 171 RILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQA 246 (681)
Q Consensus 171 ~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pv 246 (681)
..++.+|++|+|+|.++... .....++..+.. .+.|++|++||.|+.+.+ .-..++.+.+..+. .+++
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~-~v~~~~~~~~~~~~-------~~~~ 138 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDER-EVSVEEAQEFAKEL-------GVPY 138 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGS-SSCHHHHHHHHHHT-------TSEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccceeeeccccccccc-cchhhHHHHHHHHh-------CCEE
Confidence 89999999999999876322 222233343333 248999999999987522 11223444444333 3589
Q ss_pred EEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 247 IYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 247 i~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
+.+||+++. ++..+|..+++.+
T Consensus 139 ~e~Sa~~~~----------~v~~~f~~~i~~i 160 (162)
T PF00071_consen 139 FEVSAKNGE----------NVKEIFQELIRKI 160 (162)
T ss_dssp EEEBTTTTT----------THHHHHHHHHHHH
T ss_pred EEEECCCCC----------CHHHHHHHHHHHH
Confidence 999999998 8999999888754
No 239
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.62 E-value=4.1e-15 Score=160.40 Aligned_cols=150 Identities=23% Similarity=0.245 Sum_probs=101.7
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEee-CCeEEEEEeCCCc-cc
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY-NDTKINIIDTPGH-SD 164 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~i~iiDTPGh-~d 164 (681)
....+|+++|.+|+|||||+++|++....... ..+.|.+.....+.+ ++..+.||||||+ .+
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~----------------~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~ 250 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAAD----------------QLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD 250 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeecc----------------CCccccCCEEEEEEeCCCceEEEEecCccccc
Confidence 45688999999999999999999875421111 014455555555666 4689999999998 22
Q ss_pred --------hhHHHHHHHhhcceEEEEeeCCCCCchhhH----HHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHH
Q 005713 165 --------FGGEVERILNMVEGVLLVVDSVEGPMPQTR----FVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELF 232 (681)
Q Consensus 165 --------f~~e~~~~l~~aD~~llVvDa~~g~~~qt~----~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~ 232 (681)
|.. +...+..||++|+|+|+++....... .++..+...+.|+++|+||+|+.... ++....
T Consensus 251 l~~~lie~f~~-tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~------~v~~~~ 323 (351)
T TIGR03156 251 LPHELVAAFRA-TLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP------RIERLE 323 (351)
T ss_pred CCHHHHHHHHH-HHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH------hHHHHH
Confidence 222 22347789999999999876543332 23333322368999999999986421 111110
Q ss_pred HHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 233 IELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 233 ~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
. ...+++++||++|. |+..|++.|.+.
T Consensus 324 -~-------~~~~~i~iSAktg~----------GI~eL~~~I~~~ 350 (351)
T TIGR03156 324 -E-------GYPEAVFVSAKTGE----------GLDLLLEAIAER 350 (351)
T ss_pred -h-------CCCCEEEEEccCCC----------CHHHHHHHHHhh
Confidence 0 01358999999999 999999998764
No 240
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.62 E-value=4.5e-15 Score=144.93 Aligned_cols=159 Identities=20% Similarity=0.230 Sum_probs=116.7
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
..+..+|+++|..++|||||+++|....... . .-|+......+.+++..+++||.+|+..+
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~------------------~pT~g~~~~~i~~~~~~~~~~d~gG~~~~ 71 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISE-T------------------IPTIGFNIEEIKYKGYSLTIWDLGGQESF 71 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-E------------------EEESSEEEEEEEETTEEEEEEEESSSGGG
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccc-c------------------CcccccccceeeeCcEEEEEEeccccccc
Confidence 3567889999999999999999997532111 0 11333344567789999999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCC-CchhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 166 GGEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g-~~~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
...+..++..+|++|+|||+++. -..+.++.+..+.. .++|++|++||.|+.++.. .+++.+.+.- ..-..
T Consensus 72 ~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~---~~~i~~~l~l-~~l~~ 147 (175)
T PF00025_consen 72 RPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMS---EEEIKEYLGL-EKLKN 147 (175)
T ss_dssp GGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSST---HHHHHHHTTG-GGTTS
T ss_pred cccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcch---hhHHHhhhhh-hhccc
Confidence 99999999999999999999863 23445555555443 3689999999999876532 2344443321 11112
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
...+.++.+||++|. |+.+.|++|.+.
T Consensus 148 ~~~~~v~~~sa~~g~----------Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 148 KRPWSVFSCSAKTGE----------GVDEGLEWLIEQ 174 (175)
T ss_dssp SSCEEEEEEBTTTTB----------THHHHHHHHHHH
T ss_pred CCceEEEeeeccCCc----------CHHHHHHHHHhc
Confidence 356789999999999 999999998865
No 241
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.61 E-value=4.4e-15 Score=159.84 Aligned_cols=154 Identities=23% Similarity=0.258 Sum_probs=122.2
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
-.+|+|+|.+|+|||||+|+|++...++...-. |+|.+.-...+..+|+.+.|+||+|..+....
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~---------------GTTRDviee~i~i~G~pv~l~DTAGiRet~d~ 281 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIA---------------GTTRDVIEEDINLNGIPVRLVDTAGIRETDDV 281 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCC---------------CCccceEEEEEEECCEEEEEEecCCcccCccH
Confidence 467999999999999999999998666543322 89999999999999999999999999877666
Q ss_pred HHH--------HHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 169 VER--------ILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 169 ~~~--------~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
+++ .+..||.+|+|+|+++....+....+. +...+.|+++|+||+|+......... ++.
T Consensus 282 VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~--------~~~---- 348 (454)
T COG0486 282 VERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELESE--------KLA---- 348 (454)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccccchh--------hcc----
Confidence 554 477899999999999986667666666 55668999999999999865421111 111
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
...+++.+||++|. |++.|.+.|.+++..-
T Consensus 349 -~~~~~i~iSa~t~~----------Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 349 -NGDAIISISAKTGE----------GLDALREAIKQLFGKG 378 (454)
T ss_pred -CCCceEEEEecCcc----------CHHHHHHHHHHHHhhc
Confidence 12379999999998 9999999998877543
No 242
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.61 E-value=1.8e-14 Score=139.77 Aligned_cols=165 Identities=24% Similarity=0.396 Sum_probs=119.5
Q ss_pred ccCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCc-
Q 005713 84 MRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH- 162 (681)
Q Consensus 84 ~~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh- 162 (681)
.+.....-||++|.+|+|||||+|+|+++....+...+ .|.|.....+.+... +.|+|.||+
T Consensus 19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSkt--------------PGrTq~iNff~~~~~---~~lVDlPGYG 81 (200)
T COG0218 19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKT--------------PGRTQLINFFEVDDE---LRLVDLPGYG 81 (200)
T ss_pred CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCC--------------CCccceeEEEEecCc---EEEEeCCCcc
Confidence 44556788999999999999999999987543332222 277776665555443 889999997
Q ss_pred ---------cchhHHHHHHHhh---cceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCC-cccchhhHH
Q 005713 163 ---------SDFGGEVERILNM---VEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSAR-PDYVINSTF 229 (681)
Q Consensus 163 ---------~df~~e~~~~l~~---aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~-~~~~~~ei~ 229 (681)
+.+...+..++.. ..++++++|+.+++...+++.++.+...++|++|++||+|..... ....+..+.
T Consensus 82 yAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~ 161 (200)
T COG0218 82 YAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVA 161 (200)
T ss_pred cccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHH
Confidence 3455666666643 568999999999999999999999999999999999999987642 222233333
Q ss_pred HHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 230 ELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 230 ~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
+ .+........+ ++..|+.++. |+++|...|..++-
T Consensus 162 ~---~l~~~~~~~~~-~~~~ss~~k~----------Gi~~l~~~i~~~~~ 197 (200)
T COG0218 162 E---ELKKPPPDDQW-VVLFSSLKKK----------GIDELKAKILEWLK 197 (200)
T ss_pred H---HhcCCCCccce-EEEEeccccc----------CHHHHHHHHHHHhh
Confidence 2 23222111111 7888988888 88888888887653
No 243
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.61 E-value=9.8e-15 Score=156.26 Aligned_cols=159 Identities=16% Similarity=0.189 Sum_probs=109.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEee-CCeEEEEEeCCCccc--
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY-NDTKINIIDTPGHSD-- 164 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~i~iiDTPGh~d-- 164 (681)
-+..|+|+|.+++|||||+++|......+... .++|+......+.+ ++..+.||||||..+
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~~va~y----------------pfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga 220 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKPKIADY----------------PFTTLHPNLGVVRVDDYKSFVIADIPGLIEGA 220 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCCccCCC----------------CCceeCceEEEEEeCCCcEEEEEeCCCccCCC
Confidence 45679999999999999999998643221111 14566666667777 457899999999742
Q ss_pred -----hhHHHHHHHhhcceEEEEeeCCCCC-chhhHHHHHHHHH-----cCCEEEEEEeecCCCCCCcccchhhHHHHHH
Q 005713 165 -----FGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE-----FGHAVVVVVNKIDRPSARPDYVINSTFELFI 233 (681)
Q Consensus 165 -----f~~e~~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~-----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~ 233 (681)
+.....+.+..+|++|+|+|+++.. ..+...+...+.. .++|+++|+||+|+..+. ....+....+.
T Consensus 221 ~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~--~~~~~~~~~~~ 298 (335)
T PRK12299 221 SEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEE--EEREKRAALEL 298 (335)
T ss_pred CccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCch--hHHHHHHHHHH
Confidence 3445566777899999999988643 2333334444443 268999999999986543 11111111111
Q ss_pred HhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 234 ELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 234 ~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
....++++++||+++. |+.+|++.|.+.++.
T Consensus 299 ------~~~~~~i~~iSAktg~----------GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 299 ------AALGGPVFLISAVTGE----------GLDELLRALWELLEE 329 (335)
T ss_pred ------HhcCCCEEEEEcCCCC----------CHHHHHHHHHHHHHh
Confidence 1123579999999999 999999999887753
No 244
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.60 E-value=1.1e-14 Score=147.32 Aligned_cols=158 Identities=17% Similarity=0.122 Sum_probs=103.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|..++|||||+.+|+...+......++ +.... ....+....+.++||||+|+..|....
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi--------------~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~ 66 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTV--------------FENYT-ASFEIDKRRIELNMWDTSGSSYYDNVR 66 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCcc--------------ccceE-EEEEECCEEEEEEEEeCCCcHHHHHHh
Confidence 579999999999999999999865543332222 11111 112233344688999999999999988
Q ss_pred HHHHhhcceEEEEeeCCCCCchhh-HHHHH-HHHH--cCCEEEEEEeecCCCCCCc--c---------cchhhHHHHHHH
Q 005713 170 ERILNMVEGVLLVVDSVEGPMPQT-RFVLK-KALE--FGHAVVVVVNKIDRPSARP--D---------YVINSTFELFIE 234 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~qt-~~~l~-~~~~--~gip~ivviNKiD~~~~~~--~---------~~~~ei~~~~~~ 234 (681)
..+++.+|++|+|+|.++...-+. ...|. .... .+.|+|+|+||+|+..... . -..++...+..+
T Consensus 67 ~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~ 146 (222)
T cd04173 67 PLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQ 146 (222)
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHH
Confidence 899999999999999887532222 22332 2222 3689999999999864210 0 001111222222
Q ss_pred hhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 235 LNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 235 l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
++ ..+++++||+++.+ ++.++|+.....
T Consensus 147 ~~------~~~y~E~SAk~~~~---------~V~~~F~~~~~~ 174 (222)
T cd04173 147 VG------AVSYVECSSRSSER---------SVRDVFHVATVA 174 (222)
T ss_pred cC------CCEEEEcCCCcCCc---------CHHHHHHHHHHH
Confidence 22 13799999999872 488888887764
No 245
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.60 E-value=4e-15 Score=126.95 Aligned_cols=83 Identities=27% Similarity=0.384 Sum_probs=77.5
Q ss_pred eEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEeccccccc
Q 005713 289 LQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQI 368 (681)
Q Consensus 289 ~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~ 368 (681)
|.++||+++++++.|+++++||++|+|++||.|++...+... +|.+|+.+.|.++.++++|.|||||++.|++++.+
T Consensus 1 ~~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~~~~---~v~~l~~~~g~~~~~v~~~~aGdI~~i~g~~~~~~ 77 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKGKKE---RVGRLLRMHGKKQEEVEEAGAGDIGAVAGLKDTAT 77 (83)
T ss_pred CEEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCCcEE---EeeEEEEEcCCCceECCEeCCCCEEEEECCCCCcc
Confidence 468999999999999999999999999999999998876554 89999999999999999999999999999999999
Q ss_pred CCeeec
Q 005713 369 GETIAD 374 (681)
Q Consensus 369 Gdtl~~ 374 (681)
||||++
T Consensus 78 Gdtl~~ 83 (83)
T cd04088 78 GDTLCD 83 (83)
T ss_pred CCEeeC
Confidence 999974
No 246
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.60 E-value=4.4e-15 Score=127.07 Aligned_cols=81 Identities=23% Similarity=0.389 Sum_probs=75.3
Q ss_pred EEEEEeee---cCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEecccccc
Q 005713 291 MLATNLEY---DEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQ 367 (681)
Q Consensus 291 ~~V~~~~~---d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~ 367 (681)
++|||+.+ +++.|+++++||++|+|++||.|++...+.. ++|.+|+.+.|.++.++++|.||||++++|++++.
T Consensus 1 ~~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~~~---~kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl~~~~ 77 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLGKE---VRLSNPQQFFAQDRETVDEAYPGDIIGLVNPGNFQ 77 (85)
T ss_pred CEEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCCCE---EEeeEeEEEecCCeeEcCEECCCCEEEEECCCCcc
Confidence 37899999 9999999999999999999999998876554 48999999999999999999999999999999999
Q ss_pred cCCeeec
Q 005713 368 IGETIAD 374 (681)
Q Consensus 368 ~Gdtl~~ 374 (681)
+|||||+
T Consensus 78 ~Gdtl~~ 84 (85)
T cd03689 78 IGDTLTE 84 (85)
T ss_pred ccCEeeC
Confidence 9999985
No 247
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.60 E-value=4.9e-15 Score=143.36 Aligned_cols=150 Identities=19% Similarity=0.245 Sum_probs=98.5
Q ss_pred EEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC-CeEEEEEeCCCccch-------
Q 005713 94 IIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN-DTKINIIDTPGHSDF------- 165 (681)
Q Consensus 94 IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-~~~i~iiDTPGh~df------- 165 (681)
++|++|+|||||+++|.+....... ..+.|+......+.++ +..++||||||+.+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~ 64 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVAN----------------YPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGL 64 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccC----------------CCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCc
Confidence 5899999999999999876421111 1144555555556677 889999999998432
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCC-------chhhHHHHHHHHH----------cCCEEEEEEeecCCCCCCcccchhhH
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGP-------MPQTRFVLKKALE----------FGHAVVVVVNKIDRPSARPDYVINST 228 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~-------~~qt~~~l~~~~~----------~gip~ivviNKiD~~~~~~~~~~~ei 228 (681)
.......++.+|++++|+|+.+.. ..+...++..+.. .++|+++|+||+|+...+. ..+.
T Consensus 65 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~---~~~~ 141 (176)
T cd01881 65 GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE---LEEE 141 (176)
T ss_pred cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH---HHHH
Confidence 223455678899999999998762 1222223222221 3689999999999865431 1111
Q ss_pred HHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 229 FELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 229 ~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
. .... ......+++++||++|. |+..+++.+...
T Consensus 142 ~--~~~~---~~~~~~~~~~~Sa~~~~----------gl~~l~~~l~~~ 175 (176)
T cd01881 142 L--VREL---ALEEGAEVVPISAKTEE----------GLDELIRAIYEL 175 (176)
T ss_pred H--HHHH---hcCCCCCEEEEehhhhc----------CHHHHHHHHHhh
Confidence 0 0010 11124579999999999 899999988754
No 248
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.60 E-value=1.4e-14 Score=139.04 Aligned_cols=149 Identities=15% Similarity=0.200 Sum_probs=98.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCccchhH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDFGG 167 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~~ 167 (681)
.+|+++|+.|+|||||+.+++...+..... +. +-.. .. .+..++ ..+.||||+|..+.
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~-~~--------------~~~~-~~--~i~~~~~~~~l~i~D~~g~~~~-- 60 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLES-PE--------------GGRF-KK--EVLVDGQSHLLLIRDEGGAPDA-- 60 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCC-CC--------------ccce-EE--EEEECCEEEEEEEEECCCCCch--
Confidence 379999999999999999998754432111 10 0011 11 233344 67899999999763
Q ss_pred HHHHHHhhcceEEEEeeCCCCCchhh-HHHHHHHHHc----CCEEEEEEeecCCCCCCcccchh-hHHHHHHHhhccccc
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMPQT-RFVLKKALEF----GHAVVVVVNKIDRPSARPDYVIN-STFELFIELNATDEQ 241 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~qt-~~~l~~~~~~----gip~ivviNKiD~~~~~~~~~~~-ei~~~~~~l~~~~~~ 241 (681)
.+++.+|++++|+|.++...-+. ..++..+... ++|+++|+||+|+.......+.. +..++..+ .
T Consensus 61 ---~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~------~ 131 (158)
T cd04103 61 ---QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCAD------M 131 (158)
T ss_pred ---hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHH------h
Confidence 45688999999999887544333 4455555443 47999999999985322222222 22222211 1
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
..++++++||++|. |++++|+.+.+.
T Consensus 132 ~~~~~~e~SAk~~~----------~i~~~f~~~~~~ 157 (158)
T cd04103 132 KRCSYYETCATYGL----------NVERVFQEAAQK 157 (158)
T ss_pred CCCcEEEEecCCCC----------CHHHHHHHHHhh
Confidence 23579999999999 999999988754
No 249
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=5.4e-15 Score=134.71 Aligned_cols=148 Identities=20% Similarity=0.246 Sum_probs=110.5
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
.+...++.++|+.|.|||.|+.+++...+......++ |+.+.+....+..+..+++||||+|++.|
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTi--------------GveFgSrIinVGgK~vKLQIWDTAGQErF 71 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTI--------------GVEFGSRIVNVGGKTVKLQIWDTAGQERF 71 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhhccccccee--------------eeeecceeeeecCcEEEEEEeecccHHHH
Confidence 4567899999999999999999999887765444444 77787888888888899999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHHc---CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~~---gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
.....++++.|-+++||+|++.... ...-.|+.-++.+ ++-++++.||-|+..++- -...+... | +.+
T Consensus 72 RSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~-VtflEAs~-F----aqE-- 143 (214)
T KOG0086|consen 72 RSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPERE-VTFLEASR-F----AQE-- 143 (214)
T ss_pred HHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhh-hhHHHHHh-h----hcc--
Confidence 9999999999999999999876432 2233444444443 567888999999976541 11111111 1 111
Q ss_pred CCceEEEeecccCC
Q 005713 242 CDFQAIYASGIQGK 255 (681)
Q Consensus 242 ~~~pvi~~SA~~G~ 255 (681)
...-+..+||++|.
T Consensus 144 nel~flETSa~TGe 157 (214)
T KOG0086|consen 144 NELMFLETSALTGE 157 (214)
T ss_pred cceeeeeecccccc
Confidence 12357899999999
No 250
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.59 E-value=8.8e-15 Score=125.69 Aligned_cols=86 Identities=48% Similarity=0.788 Sum_probs=78.1
Q ss_pred eEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEeccccccc
Q 005713 289 LQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQI 368 (681)
Q Consensus 289 ~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~ 368 (681)
|+++||++.++++.|+++++||++|+|++||.|++...+.+....+|.+|+.+.|.+..+++++.||||+++.|++++.+
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~gl~~~~~ 80 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDGKIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGIEDITI 80 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCCCEEEEEEeeEeeeeCCCeeECcEECCCCEEEEECCCCCcc
Confidence 68999999999999999999999999999999998877543333589999999999999999999999999999999999
Q ss_pred CCeeec
Q 005713 369 GETIAD 374 (681)
Q Consensus 369 Gdtl~~ 374 (681)
||||++
T Consensus 81 Gdtl~~ 86 (86)
T cd03691 81 GDTICD 86 (86)
T ss_pred cceecC
Confidence 999963
No 251
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.58 E-value=2.2e-14 Score=153.45 Aligned_cols=156 Identities=17% Similarity=0.248 Sum_probs=105.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC-eEEEEEeCCCccc--
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND-TKINIIDTPGHSD-- 164 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-~~i~iiDTPGh~d-- 164 (681)
-+..|+++|.+++|||||+++|......+.... .+|.......+.+.+ ..+.||||||+.+
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~----------------fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a 219 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKPKIADYP----------------FTTLVPNLGVVRVDDGRSFVIADIPGLIEGA 219 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCccccCCC----------------CCccCCEEEEEEeCCceEEEEEeCCCcccCC
Confidence 456799999999999999999987532211111 334444555566666 8999999999742
Q ss_pred -----hhHHHHHHHhhcceEEEEeeCCCC----CchhhHHHHHHHHH-----cCCEEEEEEeecCCCCCCcccchhhHHH
Q 005713 165 -----FGGEVERILNMVEGVLLVVDSVEG----PMPQTRFVLKKALE-----FGHAVVVVVNKIDRPSARPDYVINSTFE 230 (681)
Q Consensus 165 -----f~~e~~~~l~~aD~~llVvDa~~g----~~~qt~~~l~~~~~-----~gip~ivviNKiD~~~~~~~~~~~ei~~ 230 (681)
......+.+..+|++|+|+|+++. ...+...+.+.+.. .+.|+++|+||+|+..+. . ..++.+
T Consensus 220 ~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~--~-~~~~~~ 296 (329)
T TIGR02729 220 SEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEE--E-LAELLK 296 (329)
T ss_pred cccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChH--H-HHHHHH
Confidence 334445566779999999998863 22222333333333 268999999999986542 1 222222
Q ss_pred HHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 231 LFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 231 ~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.+.+ ...++++++||+++. |+++|++.|.+.+
T Consensus 297 ~l~~------~~~~~vi~iSAktg~----------GI~eL~~~I~~~l 328 (329)
T TIGR02729 297 ELKK------ALGKPVFPISALTGE----------GLDELLYALAELL 328 (329)
T ss_pred HHHH------HcCCcEEEEEccCCc----------CHHHHHHHHHHHh
Confidence 2221 123579999999999 9999999998765
No 252
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.57 E-value=1.2e-14 Score=123.44 Aligned_cols=81 Identities=31% Similarity=0.448 Sum_probs=75.2
Q ss_pred eEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEeccccccc
Q 005713 289 LQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQI 368 (681)
Q Consensus 289 ~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~ 368 (681)
|.++|||+.+|++ |+++++||++|+|++||.|++...+.+. +|.+|+.+.|.++.+++++.||||+++.|++ +.+
T Consensus 1 ~~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~~~~---~v~~i~~~~g~~~~~~~~~~aGdI~~i~g~~-~~~ 75 (81)
T cd04091 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTGKKV---RVPRLVRMHSNEMEEVEEAGAGDICAIFGID-CAS 75 (81)
T ss_pred CeEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCCCEE---EEeEEEEEeCCCceEccEECCCCEEEEECCC-ccc
Confidence 5789999999988 9999999999999999999998877654 9999999999999999999999999999997 999
Q ss_pred CCeeec
Q 005713 369 GETIAD 374 (681)
Q Consensus 369 Gdtl~~ 374 (681)
||||++
T Consensus 76 Gdtl~~ 81 (81)
T cd04091 76 GDTFTD 81 (81)
T ss_pred CCEecC
Confidence 999973
No 253
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.57 E-value=1.3e-14 Score=134.54 Aligned_cols=151 Identities=22% Similarity=0.251 Sum_probs=101.3
Q ss_pred EEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHHHHH
Q 005713 94 IIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVERIL 173 (681)
Q Consensus 94 IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~~~l 173 (681)
++|++++|||||+++|+............ ..............+..+.+|||||+.++.......+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t--------------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~ 66 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETT--------------IIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYY 66 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccc--------------hhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHh
Confidence 58999999999999998765421111000 1111111112222367899999999999988888899
Q ss_pred hhcceEEEEeeCCCCCchhhHHHH-----HHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceEEE
Q 005713 174 NMVEGVLLVVDSVEGPMPQTRFVL-----KKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIY 248 (681)
Q Consensus 174 ~~aD~~llVvDa~~g~~~qt~~~l-----~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~ 248 (681)
+.+|++++|+|+..+........+ ......+.|+++|+||+|+.......... ....+. .....++++
T Consensus 67 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~-~~~~~~------~~~~~~~~~ 139 (157)
T cd00882 67 RGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE-LAEQLA------KELGVPYFE 139 (157)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH-HHHHHH------hhcCCcEEE
Confidence 999999999999986655544433 33344579999999999987543222111 011111 123468999
Q ss_pred eecccCCCCCCCCCCCCCcchhHHHHH
Q 005713 249 ASGIQGKAGLSPDNLADDLGPLFESIM 275 (681)
Q Consensus 249 ~SA~~G~~~~~~~~~~~gi~~Ll~~I~ 275 (681)
+|++++. ++..+++.|.
T Consensus 140 ~s~~~~~----------~i~~~~~~l~ 156 (157)
T cd00882 140 TSAKTGE----------NVEELFEELA 156 (157)
T ss_pred EecCCCC----------ChHHHHHHHh
Confidence 9999998 8888888775
No 254
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.57 E-value=2.9e-14 Score=155.54 Aligned_cols=159 Identities=17% Similarity=0.244 Sum_probs=108.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC-eEEEEEeCCCccc---
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND-TKINIIDTPGHSD--- 164 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-~~i~iiDTPGh~d--- 164 (681)
+-.|+|+|.+|+|||||+++|+.....+... .++|.......+.+.+ ..+.|+||||..+
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~----------------p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~ 222 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADY----------------PFTTLVPNLGVVRVDDERSFVVADIPGLIEGAS 222 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCC----------------CCCccCcEEEEEEeCCCcEEEEEeCCCcccccc
Confidence 4479999999999999999998654321111 1456666666677765 4699999999743
Q ss_pred ----hhHHHHHHHhhcceEEEEeeCCC----CCchhhHHHHHHHHHc-----CCEEEEEEeecCCCCCCcccchhhHHHH
Q 005713 165 ----FGGEVERILNMVEGVLLVVDSVE----GPMPQTRFVLKKALEF-----GHAVVVVVNKIDRPSARPDYVINSTFEL 231 (681)
Q Consensus 165 ----f~~e~~~~l~~aD~~llVvDa~~----g~~~qt~~~l~~~~~~-----gip~ivviNKiD~~~~~~~~~~~ei~~~ 231 (681)
....+.+.+..+|++|+|+|++. ....+...+++.+..+ +.|.++|+||+|+.... +..+.+..+
T Consensus 223 ~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~--el~~~l~~l 300 (390)
T PRK12298 223 EGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEE--EAEERAKAI 300 (390)
T ss_pred chhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChH--HHHHHHHHH
Confidence 33445567888999999999872 2333444455555543 58999999999986432 222222222
Q ss_pred HHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 232 FIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 232 ~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
...+. ...+++++||+++. ++..|++.|.+.++.
T Consensus 301 ~~~~~-----~~~~Vi~ISA~tg~----------GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 301 VEALG-----WEGPVYLISAASGL----------GVKELCWDLMTFIEE 334 (390)
T ss_pred HHHhC-----CCCCEEEEECCCCc----------CHHHHHHHHHHHhhh
Confidence 22111 12368999999999 999999999998864
No 255
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.57 E-value=5.8e-14 Score=133.96 Aligned_cols=155 Identities=26% Similarity=0.348 Sum_probs=103.0
Q ss_pred EEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch------
Q 005713 92 IAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF------ 165 (681)
Q Consensus 92 V~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df------ 165 (681)
|+++|+.|+|||||++.|++........+. .+.|..... +.+. ..+.+|||||+.+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~--------------~~~t~~~~~--~~~~-~~~~~~D~~g~~~~~~~~~~ 64 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKT--------------PGKTQLINF--FNVN-DKFRLVDLPGYGYAKVSKEV 64 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCC--------------CCcceeEEE--EEcc-CeEEEecCCCccccccCHHH
Confidence 799999999999999999854332222111 133333222 2222 28999999997553
Q ss_pred ----hHHHHHHHh---hcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCC-cccchhhHHHHHHHhhc
Q 005713 166 ----GGEVERILN---MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSAR-PDYVINSTFELFIELNA 237 (681)
Q Consensus 166 ----~~e~~~~l~---~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~-~~~~~~ei~~~~~~l~~ 237 (681)
...+..++. .++++++|+|............++.+...+.|+++++||+|+.... .......+...+..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~--- 141 (170)
T cd01876 65 KEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKL--- 141 (170)
T ss_pred HHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHh---
Confidence 333333443 4578999999988777777777888888899999999999985332 11122222222211
Q ss_pred ccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 238 TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 238 ~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.....+++++||+++. ++.++++.|.+++
T Consensus 142 --~~~~~~~~~~Sa~~~~----------~~~~l~~~l~~~~ 170 (170)
T cd01876 142 --FEIDPPIILFSSLKGQ----------GIDELRALIEKWL 170 (170)
T ss_pred --ccCCCceEEEecCCCC----------CHHHHHHHHHHhC
Confidence 1224579999999998 8899999887653
No 256
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.57 E-value=6e-14 Score=141.45 Aligned_cols=160 Identities=16% Similarity=0.146 Sum_probs=108.9
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
.....+|+++|+.|+|||||+++++..........+. |..+.........+...+++|||||+.+|
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~ 71 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTL--------------GVEVHPLKFYTNCGPICFNVWDTAGQEKF 71 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCcc--------------ceEEEEEEEEECCeEEEEEEEECCCchhh
Confidence 3346789999999999999999887654432222222 44443333334445689999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCchhhHH-HHHHHHH--cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRF-VLKKALE--FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~~qt~~-~l~~~~~--~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
......+++.+|++|+|+|.++...-+... ++..+.. .++|+++++||+|+.... ...+...+.. ..
T Consensus 72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~---~~~~~~~~~~-------~~ 141 (215)
T PTZ00132 72 GGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQ---VKARQITFHR-------KK 141 (215)
T ss_pred hhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcccc---CCHHHHHHHH-------Hc
Confidence 888888899999999999998755443332 2222222 368999999999985432 1112222211 12
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.+.++++||++|. |++..+..|.+.+.
T Consensus 142 ~~~~~e~Sa~~~~----------~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 142 NLQYYDISAKSNY----------NFEKPFLWLARRLT 168 (215)
T ss_pred CCEEEEEeCCCCC----------CHHHHHHHHHHHHh
Confidence 3578999999998 88888888776653
No 257
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=4.5e-14 Score=154.98 Aligned_cols=153 Identities=18% Similarity=0.288 Sum_probs=105.2
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC-CeEEEEEeCCCccc---
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN-DTKINIIDTPGHSD--- 164 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-~~~i~iiDTPGh~d--- 164 (681)
+..|+++|.+++|||||+++|+.....+... .++|+......+.+. +..+.||||||...
T Consensus 158 ~adVglVG~pNaGKSTLLn~Lt~ak~kIa~y----------------pfTTl~PnlG~v~~~~~~~~~laD~PGliega~ 221 (424)
T PRK12297 158 LADVGLVGFPNVGKSTLLSVVSNAKPKIANY----------------HFTTLVPNLGVVETDDGRSFVMADIPGLIEGAS 221 (424)
T ss_pred cCcEEEEcCCCCCHHHHHHHHHcCCCccccC----------------CcceeceEEEEEEEeCCceEEEEECCCCccccc
Confidence 4579999999999999999998754322111 145666666667776 78999999999743
Q ss_pred ----hhHHHHHHHhhcceEEEEeeCCCC----CchhhHHHHHHHHH-----cCCEEEEEEeecCCCCCCcccchhhHHHH
Q 005713 165 ----FGGEVERILNMVEGVLLVVDSVEG----PMPQTRFVLKKALE-----FGHAVVVVVNKIDRPSARPDYVINSTFEL 231 (681)
Q Consensus 165 ----f~~e~~~~l~~aD~~llVvDa~~g----~~~qt~~~l~~~~~-----~gip~ivviNKiD~~~~~~~~~~~ei~~~ 231 (681)
......+.+..+|++|+|||+++. +......+...+.. .++|.+||+||+|+... . +.+..+
T Consensus 222 ~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~---e~l~~l 296 (424)
T PRK12297 222 EGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--E---ENLEEF 296 (424)
T ss_pred ccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--H---HHHHHH
Confidence 223344556679999999998642 22233334444443 36899999999997432 1 222222
Q ss_pred HHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 232 FIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 232 ~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
...+. .+++++||+++. |+.+|++.|.+.+.
T Consensus 297 ~~~l~-------~~i~~iSA~tge----------GI~eL~~~L~~~l~ 327 (424)
T PRK12297 297 KEKLG-------PKVFPISALTGQ----------GLDELLYAVAELLE 327 (424)
T ss_pred HHHhC-------CcEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 22222 479999999999 99999999887764
No 258
>PRK11058 GTPase HflX; Provisional
Probab=99.56 E-value=2e-14 Score=158.57 Aligned_cols=153 Identities=20% Similarity=0.232 Sum_probs=103.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCe-EEEEEeCCCccc--
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDT-KINIIDTPGHSD-- 164 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~-~i~iiDTPGh~d-- 164 (681)
..+.|+++|.+|+|||||+|+|++....... .-+.|++.....+.+.+. .+.||||||+.+
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~----------------~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~l 259 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVYAAD----------------QLFATLDPTLRRIDVADVGETVLADTVGFIRHL 259 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCceeecc----------------CCCCCcCCceEEEEeCCCCeEEEEecCcccccC
Confidence 4578999999999999999999864322111 114555555556666654 889999999843
Q ss_pred -------hhHHHHHHHhhcceEEEEeeCCCCCchhhH----HHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHH
Q 005713 165 -------FGGEVERILNMVEGVLLVVDSVEGPMPQTR----FVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFI 233 (681)
Q Consensus 165 -------f~~e~~~~l~~aD~~llVvDa~~g~~~qt~----~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~ 233 (681)
|.. +...++.+|++|+|+|+++....... .++..+...++|+++|+||+|+..... ..+ +. .
T Consensus 260 p~~lve~f~~-tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~----~~~-~~-~ 332 (426)
T PRK11058 260 PHDLVAAFKA-TLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE----PRI-DR-D 332 (426)
T ss_pred CHHHHHHHHH-HHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh----HHH-HH-H
Confidence 222 23346789999999999886543332 334444444789999999999864211 111 10 0
Q ss_pred HhhcccccCCce-EEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 234 ELNATDEQCDFQ-AIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 234 ~l~~~~~~~~~p-vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
. ..+| ++++||++|. |+..|++.|.+.+..
T Consensus 333 ~-------~~~~~~v~ISAktG~----------GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 333 E-------ENKPIRVWLSAQTGA----------GIPLLFQALTERLSG 363 (426)
T ss_pred h-------cCCCceEEEeCCCCC----------CHHHHHHHHHHHhhh
Confidence 0 1223 5889999999 999999999988753
No 259
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.56 E-value=3.5e-14 Score=157.64 Aligned_cols=157 Identities=20% Similarity=0.244 Sum_probs=107.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc---
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD--- 164 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d--- 164 (681)
-+..|+|+|.+++|||||+++|......+.. ..++|+......+.+++..+.||||||..+
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIad----------------ypfTTl~P~lGvv~~~~~~f~laDtPGliegas 221 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIAD----------------YPFTTLVPNLGVVQAGDTRFTVADVPGLIPGAS 221 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccc----------------cCcccccceEEEEEECCeEEEEEECCCCccccc
Confidence 4578999999999999999999865332211 115677777777888899999999999632
Q ss_pred ----hhHHHHHHHhhcceEEEEeeCCCC-----CchhhHHH---H-HHH----------HHcCCEEEEEEeecCCCCCCc
Q 005713 165 ----FGGEVERILNMVEGVLLVVDSVEG-----PMPQTRFV---L-KKA----------LEFGHAVVVVVNKIDRPSARP 221 (681)
Q Consensus 165 ----f~~e~~~~l~~aD~~llVvDa~~g-----~~~qt~~~---l-~~~----------~~~gip~ivviNKiD~~~~~~ 221 (681)
......+.+..+|++|+|||++.. +..+...+ | ... ...+.|.|||+||+|+.++.
T Consensus 222 ~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~- 300 (500)
T PRK12296 222 EGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR- 300 (500)
T ss_pred hhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH-
Confidence 223345567789999999998741 11111111 1 111 12368999999999986542
Q ss_pred ccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 222 DYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 222 ~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
+..+.+...+.+ ..++++++||+++. |+.+|+++|.+.+.
T Consensus 301 -el~e~l~~~l~~-------~g~~Vf~ISA~tge----------GLdEL~~~L~ell~ 340 (500)
T PRK12296 301 -ELAEFVRPELEA-------RGWPVFEVSAASRE----------GLRELSFALAELVE 340 (500)
T ss_pred -HHHHHHHHHHHH-------cCCeEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 222222222221 14689999999999 88999888877663
No 260
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.56 E-value=1.7e-14 Score=130.86 Aligned_cols=160 Identities=19% Similarity=0.241 Sum_probs=121.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
+..+.+|+|.+|+|||+|+-++....+.-....++ |+.+......+.....++.||||+|++.|..
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTi--------------GvDfkirTv~i~G~~VkLqIwDtAGqErFrt 72 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTI--------------GVDFKIRTVDINGDRVKLQIWDTAGQERFRT 72 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEe--------------eeeEEEEEeecCCcEEEEEEeecccHHHHHH
Confidence 45678899999999999999998776543333333 6667777777777778999999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCC-chhhHHHHHHHHHc--CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCc
Q 005713 168 EVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~~--gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~ 244 (681)
.+..+++..+++++|+|.+.+. +.....||..++.. .+|-++|.||.|.++-+.-. -++.+.. ..++++
T Consensus 73 itstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~-t~dAr~~-------A~~mgi 144 (198)
T KOG0079|consen 73 ITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVD-TEDARAF-------ALQMGI 144 (198)
T ss_pred HHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeee-hHHHHHH-------HHhcCc
Confidence 9999999999999999988764 45666777777664 47899999999987643211 1122222 223456
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.+|.+||+... ++++.|..|.+.+-
T Consensus 145 e~FETSaKe~~----------NvE~mF~cit~qvl 169 (198)
T KOG0079|consen 145 ELFETSAKENE----------NVEAMFHCITKQVL 169 (198)
T ss_pred hheehhhhhcc----------cchHHHHHHHHHHH
Confidence 68999999998 78888888876553
No 261
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.55 E-value=1.2e-13 Score=140.36 Aligned_cols=141 Identities=22% Similarity=0.244 Sum_probs=101.3
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccc-eeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERG-ITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erG-iTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
...+.|+++|++|+|||||++.|+....... . ....| +++ +...+.+++++||||+.
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~----~----------~~~~g~i~i------~~~~~~~i~~vDtPg~~-- 94 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQN----I----------SDIKGPITV------VTGKKRRLTFIECPNDI-- 94 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCc----c----------ccccccEEE------EecCCceEEEEeCCchH--
Confidence 3467899999999999999999987522110 0 01123 222 23467899999999974
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEE-EEEeecCCCCCC--cccchhhHHHHHH-Hhhccccc
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVV-VVVNKIDRPSAR--PDYVINSTFELFI-ELNATDEQ 241 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~i-vviNKiD~~~~~--~~~~~~ei~~~~~-~l~~~~~~ 241 (681)
..+...+..+|.+++|+|+.++...++..++..+...++|.+ +|+||+|+.... .+.+..++++.+. ++.
T Consensus 95 -~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~----- 168 (225)
T cd01882 95 -NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVY----- 168 (225)
T ss_pred -HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhC-----
Confidence 556677899999999999999999999999999998999954 599999986432 2334444444332 221
Q ss_pred CCceEEEeecccCC
Q 005713 242 CDFQAIYASGIQGK 255 (681)
Q Consensus 242 ~~~pvi~~SA~~G~ 255 (681)
...+++++||++..
T Consensus 169 ~~~ki~~iSa~~~~ 182 (225)
T cd01882 169 QGAKLFYLSGIVHG 182 (225)
T ss_pred CCCcEEEEeeccCC
Confidence 13489999999875
No 262
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.55 E-value=8.3e-14 Score=138.97 Aligned_cols=168 Identities=18% Similarity=0.241 Sum_probs=105.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEe-----eCCeEEEEEeCCCccch
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT-----YNDTKINIIDTPGHSDF 165 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~-----~~~~~i~iiDTPGh~df 165 (681)
+|+++|..++|||||+++++...+......++ |.++..+...+. ...+.++||||+|+++|
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Ti--------------g~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~ 67 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTV--------------GCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV 67 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcce--------------eeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH
Confidence 69999999999999999999876543333332 434433333332 13468999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCchhh-HHHHHHHHH----------------------cCCEEEEEEeecCCCCCCcc
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPMPQT-RFVLKKALE----------------------FGHAVVVVVNKIDRPSARPD 222 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~~qt-~~~l~~~~~----------------------~gip~ivviNKiD~~~~~~~ 222 (681)
......+++.+|++|+|+|.++...-+. ..|+..+.. .++|+|+|+||+|+.+.+.-
T Consensus 68 ~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~ 147 (202)
T cd04102 68 KSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKES 147 (202)
T ss_pred HHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhccc
Confidence 9988999999999999999887543322 234444432 25899999999998654311
Q ss_pred cchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHh
Q 005713 223 YVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (681)
Q Consensus 223 ~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~ 276 (681)
.... .+...+.-.+++..|.+..++.....+..-......+..+|+.+++
T Consensus 148 ---~~~~-~~~~~~~ia~~~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (202)
T cd04102 148 ---SGNL-VLTARGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIE 197 (202)
T ss_pred ---chHH-HhhHhhhHHHhcCCceEEEecCCcccccCCCccHHHHHHHHHHHHH
Confidence 1100 1111112234556677888887665322221111223455555543
No 263
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.55 E-value=6.4e-14 Score=139.19 Aligned_cols=163 Identities=15% Similarity=0.086 Sum_probs=96.2
Q ss_pred cEEEEEeCCCCcHHHHHH-HHHhhcCc-----cccccceeeeeeccchhhcccceeEEee-eeEEeeCCeEEEEEeCCCc
Q 005713 90 RNIAIIAHVDHGKTTLVD-AMLKQAKV-----FRDNQTVKERIMDSNDLERERGITILSK-NTSITYNDTKINIIDTPGH 162 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~-~Ll~~~~~-----~~~~~~~~~~~~D~~~~E~erGiTi~~~-~~~~~~~~~~i~iiDTPGh 162 (681)
.+|+++|..++|||||+. ++....+. .....++. ..|... ....+..+ ...+....+.++||||+|+
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~--~~~~~~----~~~~~~~~~~~~~~~~~v~l~iwDTaG~ 76 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVW--AIDQYR----VCQEVLERSRDVVDGVSVSLRLWDTFGD 76 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCcee--ccccee----EEeeeccccceeeCCEEEEEEEEeCCCC
Confidence 589999999999999996 44332211 00111110 000000 00000000 0122334578999999999
Q ss_pred cchhHHHHHHHhhcceEEEEeeCCCCCchh-hH-HHHHHHHH--cCCEEEEEEeecCCCCCCc-----------------
Q 005713 163 SDFGGEVERILNMVEGVLLVVDSVEGPMPQ-TR-FVLKKALE--FGHAVVVVVNKIDRPSARP----------------- 221 (681)
Q Consensus 163 ~df~~e~~~~l~~aD~~llVvDa~~g~~~q-t~-~~l~~~~~--~gip~ivviNKiD~~~~~~----------------- 221 (681)
.++ ....+++.+|++|+|+|.++...-+ .. .|+..+.. .+.|+++|+||+|+.....
T Consensus 77 ~~~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
T cd01873 77 HDK--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNA 154 (195)
T ss_pred hhh--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccC
Confidence 753 2344788999999999988754332 22 24444443 2689999999999864211
Q ss_pred -ccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 222 -DYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 222 -~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
.-..++.+.+..+ ..++++++||++|. |+.++|+.+++.
T Consensus 155 ~~V~~~e~~~~a~~-------~~~~~~E~SAkt~~----------~V~e~F~~~~~~ 194 (195)
T cd01873 155 DILPPETGRAVAKE-------LGIPYYETSVVTQF----------GVKDVFDNAIRA 194 (195)
T ss_pred CccCHHHHHHHHHH-------hCCEEEEcCCCCCC----------CHHHHHHHHHHh
Confidence 1112223333222 24579999999999 899999988753
No 264
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.54 E-value=5.7e-14 Score=138.46 Aligned_cols=159 Identities=14% Similarity=0.131 Sum_probs=100.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|+.|+|||||+++|...........+. +... .....+......+++|||||+.+|....
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~ 66 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTV--------------FENY-VTDCRVDGKPVQLALWDTAGQEEYERLR 66 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcc--------------cceE-EEEEEECCEEEEEEEEECCCChhccccc
Confidence 479999999999999999998544321111111 0001 1111222223568899999998887655
Q ss_pred HHHHhhcceEEEEeeCCCCCchhhH--HHHHHHHHc--CCEEEEEEeecCCCCCCcc-------cc--hhhHHHHHHHhh
Q 005713 170 ERILNMVEGVLLVVDSVEGPMPQTR--FVLKKALEF--GHAVVVVVNKIDRPSARPD-------YV--INSTFELFIELN 236 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~~qt~--~~l~~~~~~--gip~ivviNKiD~~~~~~~-------~~--~~ei~~~~~~l~ 236 (681)
...++.+|++|+|+|......-+.. .++..+... .+|+++|+||+|+...... .. .++...+...++
T Consensus 67 ~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (187)
T cd04129 67 PLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIG 146 (187)
T ss_pred hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhC
Confidence 5677899999999998653322221 244444333 5899999999998542211 01 111222222221
Q ss_pred cccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 237 ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 237 ~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
..+++++||++|. |++++|+.+.+.+.
T Consensus 147 ------~~~~~e~Sa~~~~----------~v~~~f~~l~~~~~ 173 (187)
T cd04129 147 ------AKKYMECSALTGE----------GVDDVFEAATRAAL 173 (187)
T ss_pred ------CcEEEEccCCCCC----------CHHHHHHHHHHHHh
Confidence 1368999999999 99999999987653
No 265
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.54 E-value=3.6e-14 Score=121.88 Aligned_cols=82 Identities=26% Similarity=0.475 Sum_probs=73.1
Q ss_pred eEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEe-c---cc
Q 005713 289 LQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC-G---ID 364 (681)
Q Consensus 289 ~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~-g---l~ 364 (681)
|+++||+++++++.|+++++||++|+|++||.|++...++.. +|.+|+.+ +.++.+++++.||||+++. | ++
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~~~~---~i~~l~~~-~~~~~~~~~~~aGdI~~v~~g~~~l~ 76 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTGKEY---EVEEVGIF-RPEMTPTDELSAGQVGYIIAGIKTVK 76 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCCCeE---EEEEEEEE-CCCccCCceECCCCEEEEEccccccC
Confidence 679999999999999999999999999999999998766544 89999955 8888999999999999995 4 67
Q ss_pred ccccCCeeec
Q 005713 365 DIQIGETIAD 374 (681)
Q Consensus 365 ~~~~Gdtl~~ 374 (681)
++.+|||||+
T Consensus 77 ~~~~Gdtl~~ 86 (86)
T cd03699 77 DARVGDTITL 86 (86)
T ss_pred ccccccEeeC
Confidence 7899999974
No 266
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.53 E-value=4.7e-14 Score=161.86 Aligned_cols=146 Identities=20% Similarity=0.304 Sum_probs=106.7
Q ss_pred eCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH------H
Q 005713 96 AHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE------V 169 (681)
Q Consensus 96 G~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e------~ 169 (681)
|.+|+|||||+|+|.+...... ...|+|++.....+.+++..+++|||||+.+|... .
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~----------------n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~ 64 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVG----------------NWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVA 64 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeec----------------CCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHH
Confidence 7899999999999986532111 12388998888888999999999999999887542 2
Q ss_pred HHHH--hhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceEE
Q 005713 170 ERIL--NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAI 247 (681)
Q Consensus 170 ~~~l--~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi 247 (681)
..++ ..+|++++|+|+++. ........++.+.++|+++|+||+|+.+.+. ...+...+.+ .+++|++
T Consensus 65 ~~~l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~--i~~d~~~L~~-------~lg~pvv 133 (591)
T TIGR00437 65 RDYLLNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEKKG--IRIDEEKLEE-------RLGVPVV 133 (591)
T ss_pred HHHHhhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhCC--ChhhHHHHHH-------HcCCCEE
Confidence 2222 368999999999872 3445555666778999999999999864321 1112222221 2346899
Q ss_pred EeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 248 YASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 248 ~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
++||++|. |++++++.+.+..
T Consensus 134 ~tSA~tg~----------Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 134 PTSATEGR----------GIERLKDAIRKAI 154 (591)
T ss_pred EEECCCCC----------CHHHHHHHHHHHh
Confidence 99999999 9999999998754
No 267
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.53 E-value=2.1e-13 Score=138.26 Aligned_cols=168 Identities=21% Similarity=0.267 Sum_probs=111.6
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCcc--
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS-- 163 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~-- 163 (681)
..+..+|++||.+|+|||||.|.+++......... -.+|.......+..+...+.|+||||..
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K---------------~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~ 133 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRK---------------VHTTRHRILGIITSGETQLVFYDTPGLVSK 133 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCcccccccc---------------ccceeeeeeEEEecCceEEEEecCCccccc
Confidence 34678999999999999999999998754322211 1345555566677788999999999942
Q ss_pred ----------chhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHc-CCEEEEEEeecCCCCCCcccchhhHHH--
Q 005713 164 ----------DFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF-GHAVVVVVNKIDRPSARPDYVINSTFE-- 230 (681)
Q Consensus 164 ----------df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~-gip~ivviNKiD~~~~~~~~~~~ei~~-- 230 (681)
.+......++..||.+++|+|+++.-..-.-.++..+.++ .+|-|+|+||+|..... ..+-.+.+
T Consensus 134 ~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k--~~Ll~l~~~L 211 (379)
T KOG1423|consen 134 KMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQK--RLLLNLKDLL 211 (379)
T ss_pred chhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhh--hHHhhhHHhc
Confidence 2334556788899999999999863233333455555554 68999999999976432 11211211
Q ss_pred --------------HHHHhhc---ccccCCc----eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 231 --------------LFIELNA---TDEQCDF----QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 231 --------------~~~~l~~---~~~~~~~----pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
.|..... ....+.+ -+|++||++|. |+++|-+.++...|+
T Consensus 212 t~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~----------GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 212 TNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGE----------GIKDLKQYLMSQAPP 272 (379)
T ss_pred cccccchhhhhHHHHhccCCcccccccccCcccceeEEEEeccccc----------CHHHHHHHHHhcCCC
Confidence 1111100 0000112 28999999999 888888888877655
No 268
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.51 E-value=7.4e-14 Score=129.83 Aligned_cols=137 Identities=28% Similarity=0.346 Sum_probs=97.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCC----ccch
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPG----HSDF 165 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPG----h~df 165 (681)
++|+++|.+++|||||+++|.+......+.+ .+.+.+ ++||||| +..|
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~KTq-------------------------~i~~~~---~~IDTPGEyiE~~~~ 53 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYKKTQ-------------------------AIEYYD---NTIDTPGEYIENPRF 53 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcCccc-------------------------eeEecc---cEEECChhheeCHHH
Confidence 5799999999999999999977543221111 123332 4699999 3556
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCce
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~p 245 (681)
...+......||.+++|.|+++....- --..+..++.|+|-|+||+|+... +.-++..+..+...+.. .
T Consensus 54 y~aLi~ta~dad~V~ll~dat~~~~~~---pP~fa~~f~~pvIGVITK~Dl~~~--~~~i~~a~~~L~~aG~~------~ 122 (143)
T PF10662_consen 54 YHALIVTAQDADVVLLLQDATEPRSVF---PPGFASMFNKPVIGVITKIDLPSD--DANIERAKKWLKNAGVK------E 122 (143)
T ss_pred HHHHHHHHhhCCEEEEEecCCCCCccC---CchhhcccCCCEEEEEECccCccc--hhhHHHHHHHHHHcCCC------C
Confidence 666666777899999999998743211 123344567899999999999832 12345556666666664 2
Q ss_pred EEEeecccCCCCCCCCCCCCCcchhHHHHH
Q 005713 246 AIYASGIQGKAGLSPDNLADDLGPLFESIM 275 (681)
Q Consensus 246 vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~ 275 (681)
+|++|+.+|. |+++|.+.|.
T Consensus 123 if~vS~~~~e----------Gi~eL~~~L~ 142 (143)
T PF10662_consen 123 IFEVSAVTGE----------GIEELKDYLE 142 (143)
T ss_pred eEEEECCCCc----------CHHHHHHHHh
Confidence 6999999999 8888888763
No 269
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.49 E-value=4e-13 Score=124.54 Aligned_cols=145 Identities=24% Similarity=0.327 Sum_probs=105.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
+-.+|.|+|..|+||||++++|++...... .-|.......+.++++.++|||..|+..+..
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i-------------------~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~ 75 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTI-------------------SPTLGFQIKTLEYKGYTLNIWDVGGQKTLRS 75 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCcccc-------------------CCccceeeEEEEecceEEEEEEcCCcchhHH
Confidence 356799999999999999999987642211 1233344456888999999999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCC-CchhhHHHHHHHH----HcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 168 EVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKAL----EFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g-~~~qt~~~l~~~~----~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
-+..|+..+|++|+|||+++. .+.++...++.+. -.|.|++|+.||.|+.++-..+.+..+.++ .++. ...
T Consensus 76 ~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L-~~l~---ks~ 151 (185)
T KOG0073|consen 76 YWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDL-EELA---KSH 151 (185)
T ss_pred HHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCH-HHhc---ccc
Confidence 999999999999999998763 3444555554443 247899999999999855322222222221 1221 345
Q ss_pred CceEEEeecccCC
Q 005713 243 DFQAIYASGIQGK 255 (681)
Q Consensus 243 ~~pvi~~SA~~G~ 255 (681)
+++++-+||.+|.
T Consensus 152 ~~~l~~cs~~tge 164 (185)
T KOG0073|consen 152 HWRLVKCSAVTGE 164 (185)
T ss_pred CceEEEEeccccc
Confidence 7899999999998
No 270
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.49 E-value=2.4e-13 Score=135.38 Aligned_cols=168 Identities=14% Similarity=0.171 Sum_probs=105.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEee-CCeEEEEEeCCCccchhHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY-NDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~i~iiDTPGh~df~~e 168 (681)
.+|+++|.+|+|||||+++|++............ .. .+|.... .+.. ....+.+|||||..+....
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~--~~---------~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~~ 68 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTG--VV---------ETTMKRT--PYPHPKFPNVTLWDLPGIGSTAFP 68 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccC--cc---------ccccCce--eeecCCCCCceEEeCCCCCcccCC
Confidence 5799999999999999999987532211110000 00 0111111 1111 1347899999998654333
Q ss_pred HHHH-----HhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCC----------cccchhhHHHHHH
Q 005713 169 VERI-----LNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSAR----------PDYVINSTFELFI 233 (681)
Q Consensus 169 ~~~~-----l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~----------~~~~~~ei~~~~~ 233 (681)
...+ +..+|.+|+|.| ..+......+++.+.+.+.|+++|+||+|+...+ .++.++++++...
T Consensus 69 ~~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~ 146 (197)
T cd04104 69 PDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCL 146 (197)
T ss_pred HHHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHH
Confidence 3333 455788888754 3566677778888888899999999999985321 1234444444443
Q ss_pred HhhcccccCCceEEEeecc--cCCCCCCCCCCCCCcchhHHHHHhhCCCCc
Q 005713 234 ELNATDEQCDFQAIYASGI--QGKAGLSPDNLADDLGPLFESIMRCIPGPR 282 (681)
Q Consensus 234 ~l~~~~~~~~~pvi~~SA~--~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 282 (681)
+..........+||.+|+. .++ ++..|.+.+...+|..+
T Consensus 147 ~~~~~~~~~~p~v~~vS~~~~~~~----------~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 147 ENLQEAGVSEPPVFLVSNFDPSDY----------DFPKLRETLLKDLPAHK 187 (197)
T ss_pred HHHHHcCCCCCCEEEEeCCChhhc----------ChHHHHHHHHHHhhHHH
Confidence 3322211223478999998 455 88999999999888643
No 271
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.48 E-value=2.3e-13 Score=136.15 Aligned_cols=116 Identities=20% Similarity=0.252 Sum_probs=81.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEe--eCCeEEEEEeCCCccchhH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT--YNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~--~~~~~i~iiDTPGh~df~~ 167 (681)
++|+++|++|+|||||+.+|............ +.......+. ..+..+.|||||||.+|..
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-----------------~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~ 63 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-----------------EPNVATFILNSEGKGKKFRLVDVPGHPKLRD 63 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-----------------eecceEEEeecCCCCceEEEEECCCCHHHHH
Confidence 47999999999999999999876432111110 0001111111 3467899999999999999
Q ss_pred HHHHHHhhc-ceEEEEeeCCCCC--chhhHHHHHHH----HH--cCCEEEEEEeecCCCCCCcc
Q 005713 168 EVERILNMV-EGVLLVVDSVEGP--MPQTRFVLKKA----LE--FGHAVVVVVNKIDRPSARPD 222 (681)
Q Consensus 168 e~~~~l~~a-D~~llVvDa~~g~--~~qt~~~l~~~----~~--~gip~ivviNKiD~~~~~~~ 222 (681)
.+..+++.+ +++|+|+|+.... ...+.++|..+ .. .++|+++|+||+|+..+.+.
T Consensus 64 ~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~ 127 (203)
T cd04105 64 KLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPA 127 (203)
T ss_pred HHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCH
Confidence 999999998 9999999998752 22333333222 11 37999999999999876543
No 272
>PLN00023 GTP-binding protein; Provisional
Probab=99.47 E-value=5.2e-13 Score=140.12 Aligned_cols=120 Identities=19% Similarity=0.256 Sum_probs=87.1
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEee-------------CCe
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY-------------NDT 152 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-------------~~~ 152 (681)
.....+|+++|+.++|||||+.+|+...+......++ |.++..+.+.+.. ..+
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTI--------------G~d~~ik~I~~~~~~~~~~~ik~d~~k~v 83 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTI--------------GCTVGVKHITYGSPGSSSNSIKGDSERDF 83 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCce--------------eeeEEEEEEEECCcccccccccccCCceE
Confidence 3456789999999999999999999765543332332 4444433333321 246
Q ss_pred EEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHHc---------------CCEEEEEEeecCC
Q 005713 153 KINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF---------------GHAVVVVVNKIDR 216 (681)
Q Consensus 153 ~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~~---------------gip~ivviNKiD~ 216 (681)
.++||||+|++.|......+++.+|++|+|+|.++... .....|+..+... ++|++||+||+|+
T Consensus 84 ~LqIWDTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL 163 (334)
T PLN00023 84 FVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADI 163 (334)
T ss_pred EEEEEECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccc
Confidence 79999999999999999999999999999999887322 2333455555443 3789999999999
Q ss_pred CCC
Q 005713 217 PSA 219 (681)
Q Consensus 217 ~~~ 219 (681)
...
T Consensus 164 ~~~ 166 (334)
T PLN00023 164 APK 166 (334)
T ss_pred ccc
Confidence 653
No 273
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.47 E-value=3.2e-14 Score=130.45 Aligned_cols=159 Identities=19% Similarity=0.157 Sum_probs=113.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
..++|+++|..-+|||||+-+++.+.+.-....+. ..++..+...++.....++||||+|++.|..
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTl--------------QASF~~kk~n~ed~ra~L~IWDTAGQErfHA 77 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTL--------------QASFQNKKVNVEDCRADLHIWDTAGQERFHA 77 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHH--------------HHHHhhcccccccceeeeeeeeccchHhhhc
Confidence 45789999999999999999999877654443333 1233344445555567899999999999988
Q ss_pred HHHHHHhhcceEEEEeeCCCCCchhh-HHHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMPQT-RFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~qt-~~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
.=.-+++.+|++|||+|.++...-|- +.|...++. ..+-+++|.||+|+.+.+ .-..++........++
T Consensus 78 LGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR-~Vt~qeAe~YAesvGA------ 150 (218)
T KOG0088|consen 78 LGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEER-QVTRQEAEAYAESVGA------ 150 (218)
T ss_pred cCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhh-hhhHHHHHHHHHhhch------
Confidence 77788999999999999987544333 333344433 347899999999997654 2233333333333333
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.++.+||+.+. |+.+||+.+...+
T Consensus 151 -~y~eTSAk~N~----------Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 151 -LYMETSAKDNV----------GISELFESLTAKM 174 (218)
T ss_pred -hheeccccccc----------CHHHHHHHHHHHH
Confidence 37899999998 8899888876543
No 274
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=5.2e-13 Score=120.19 Aligned_cols=150 Identities=21% Similarity=0.236 Sum_probs=110.1
Q ss_pred cCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc
Q 005713 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (681)
Q Consensus 85 ~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d 164 (681)
+...+++-.|+|..|+|||.|+.++....+...-+.++ |+.+......+.....+++||||+|+++
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphti--------------gvefgtriievsgqkiklqiwdtagqer 72 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTI--------------GVEFGTRIIEVSGQKIKLQIWDTAGQER 72 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCccc--------------ceecceeEEEecCcEEEEEEeecccHHH
Confidence 34568899999999999999999999877654444333 5555555666777778999999999999
Q ss_pred hhHHHHHHHhhcceEEEEeeCCCCCch-hhHHHHHHHHHcC---CEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 165 FGGEVERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALEFG---HAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 165 f~~e~~~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~~~g---ip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
|...+.++++.+-++++|+|.+....- ..-.|+..++.+- .-++++.||.|+...+ +-..++.+.+..+-
T Consensus 73 fravtrsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qr-dv~yeeak~faeen----- 146 (215)
T KOG0097|consen 73 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQR-DVTYEEAKEFAEEN----- 146 (215)
T ss_pred HHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcc-cCcHHHHHHHHhhc-----
Confidence 999999999999999999998764332 2233444444443 3478899999997654 33444544443332
Q ss_pred cCCceEEEeecccCCC
Q 005713 241 QCDFQAIYASGIQGKA 256 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~ 256 (681)
..-++.+||++|.|
T Consensus 147 --gl~fle~saktg~n 160 (215)
T KOG0097|consen 147 --GLMFLEASAKTGQN 160 (215)
T ss_pred --CeEEEEecccccCc
Confidence 23589999999993
No 275
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.46 E-value=6.4e-13 Score=120.44 Aligned_cols=107 Identities=24% Similarity=0.323 Sum_probs=77.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch-----
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF----- 165 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df----- 165 (681)
+|+|+|.+|+|||||+++|++........ ..+.|.......+.+.+..+.|+||||..+-
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~---------------~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~ 65 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSN---------------IPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDN 65 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESS---------------STTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccc---------------cccceeeeeeeeeeeceeeEEEEeCCCCcccchhhH
Confidence 58999999999999999999743211111 1144444444556778899999999997542
Q ss_pred ----hHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEee
Q 005713 166 ----GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNK 213 (681)
Q Consensus 166 ----~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNK 213 (681)
.....+.+..+|++++|+|+.+........+++.+. .+.|+++|+||
T Consensus 66 ~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 66 DGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 223445557899999999988744455667777775 88999999998
No 276
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.46 E-value=7.8e-13 Score=135.10 Aligned_cols=82 Identities=21% Similarity=0.346 Sum_probs=61.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch-----
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF----- 165 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df----- 165 (681)
+|+++|.+++|||||+++|.+........ .+.|.......+.+++..+++|||||+.+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~----------------~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~ 65 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAY----------------EFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK 65 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCC----------------CCccccceEEEEEECCeEEEEEECCCcccccccch
Confidence 58999999999999999998753211110 134555555667788999999999998532
Q ss_pred --hHHHHHHHhhcceEEEEeeCCCC
Q 005713 166 --GGEVERILNMVEGVLLVVDSVEG 188 (681)
Q Consensus 166 --~~e~~~~l~~aD~~llVvDa~~g 188 (681)
...+..+++.+|++++|+|+++.
T Consensus 66 ~~~~~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 66 GRGRQVIAVARTADLILMVLDATKP 90 (233)
T ss_pred hHHHHHHHhhccCCEEEEEecCCcc
Confidence 23556788999999999998753
No 277
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.45 E-value=9.3e-13 Score=147.66 Aligned_cols=155 Identities=21% Similarity=0.326 Sum_probs=116.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh---
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG--- 166 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~--- 166 (681)
.+||++|.+|+|||||+|+|++... .+.|+- |+|+..+...+.++++.+.|+|.||..++.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q------~VgNwp----------GvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S 67 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQ------KVGNWP----------GVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYS 67 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCc------eecCCC----------CeeEEEEEEEEEecCceEEEEeCCCcCCCCCCC
Confidence 4599999999999999999987532 333333 999999999999999999999999975543
Q ss_pred ---HHHHHHH--hhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 167 ---GEVERIL--NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 167 ---~e~~~~l--~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
.-+.+++ ...|.+|-|+||+. .+.......++.+.|+|+++++|++|..... -+.-+...+-+.
T Consensus 68 ~DE~Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A~~~--Gi~ID~~~L~~~------- 136 (653)
T COG0370 68 EDEKVARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEAKKR--GIRIDIEKLSKL------- 136 (653)
T ss_pred chHHHHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhHHhc--CCcccHHHHHHH-------
Confidence 1122233 24699999999976 4555666677889999999999999965322 222222333223
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
+.+|++++||++|. |++++++.+.+..+..
T Consensus 137 LGvPVv~tvA~~g~----------G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 137 LGVPVVPTVAKRGE----------GLEELKRAIIELAESK 166 (653)
T ss_pred hCCCEEEEEeecCC----------CHHHHHHHHHHhcccc
Confidence 35699999999999 9999999998866544
No 278
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.44 E-value=4.9e-13 Score=121.50 Aligned_cols=155 Identities=20% Similarity=0.249 Sum_probs=112.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
..+.++|-.++|||||++......+...- +-|+......+.-++..+.+||.||+..|...+
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~edm------------------iptvGfnmrk~tkgnvtiklwD~gGq~rfrsmW 82 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYLEDM------------------IPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMW 82 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccchhhh------------------cccccceeEEeccCceEEEEEecCCCccHHHHH
Confidence 56889999999999999987653332111 334444455566678899999999999999999
Q ss_pred HHHHhhcceEEEEeeCCC-CCchhhHHHHHHHH----HcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccc-ccCC
Q 005713 170 ERILNMVEGVLLVVDSVE-GPMPQTRFVLKKAL----EFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD-EQCD 243 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~-g~~~qt~~~l~~~~----~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~-~~~~ 243 (681)
+++.+.++.+++||||.+ +-.+..+.-+..+. -.|+|++|..||.|++++--. .++...++..+ ....
T Consensus 83 erycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~------~~li~rmgL~sitdRE 156 (186)
T KOG0075|consen 83 ERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSK------IALIERMGLSSITDRE 156 (186)
T ss_pred HHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccH------HHHHHHhCccccccce
Confidence 999999999999999987 22333444443333 348999999999999877321 22333333322 1124
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
+.+|.+|++... +++.++++++++-
T Consensus 157 vcC~siScke~~----------Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 157 VCCFSISCKEKV----------NIDITLDWLIEHS 181 (186)
T ss_pred EEEEEEEEcCCc----------cHHHHHHHHHHHh
Confidence 678999999988 8899999998864
No 279
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.42 E-value=2.1e-12 Score=130.17 Aligned_cols=165 Identities=21% Similarity=0.268 Sum_probs=108.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC-CeEEEEEeCCCccchhHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN-DTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-~~~i~iiDTPGh~df~~e 168 (681)
.+|+++|..|+|||||+++|...........++ +. .........+. ..++.+|||+|+.+|...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~--------------~~-~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~ 70 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTI--------------GN-LDPAKTIEPYRRNIKLQLWDTAGQEEYRSL 70 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCce--------------ee-eeEEEEEEeCCCEEEEEeecCCCHHHHHHH
Confidence 789999999999999999999876654333222 11 11111111221 577999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCC--CCchhhHHHHHHHHHc---CCEEEEEEeecCCCCCCccc--chhhH-----HHHHHHhh
Q 005713 169 VERILNMVEGVLLVVDSVE--GPMPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDY--VINST-----FELFIELN 236 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~--g~~~qt~~~l~~~~~~---gip~ivviNKiD~~~~~~~~--~~~ei-----~~~~~~l~ 236 (681)
+..+...++++++|+|... ....-+..+...+... +.|+++|.||+|+....... ..... ........
T Consensus 71 ~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (219)
T COG1100 71 RPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKA 150 (219)
T ss_pred HHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHH
Confidence 9999999999999999875 4444555555565554 48999999999997653211 00000 00000000
Q ss_pred cccccCCceEEEeecc--cCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 237 ATDEQCDFQAIYASGI--QGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 237 ~~~~~~~~pvi~~SA~--~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.........++.+|++ .+. ++..++..+...+.
T Consensus 151 ~~~~~~~~~~~~~s~~~~~~~----------~v~~~~~~~~~~~~ 185 (219)
T COG1100 151 VLPEVANPALLETSAKSLTGP----------NVNELFKELLRKLL 185 (219)
T ss_pred hhhhhcccceeEeecccCCCc----------CHHHHHHHHHHHHH
Confidence 0000112237899999 776 78888888777664
No 280
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.41 E-value=5.7e-14 Score=125.29 Aligned_cols=153 Identities=20% Similarity=0.211 Sum_probs=110.5
Q ss_pred EEeCCCCcHHHHHHHHHhhcCccc-cccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHHHH
Q 005713 94 IIAHVDHGKTTLVDAMLKQAKVFR-DNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVERI 172 (681)
Q Consensus 94 IiG~~~~GKTTLi~~Ll~~~~~~~-~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~~~ 172 (681)
++|.++.|||.|+-++-...+... -.+++ ||....+...+..+..++++|||+|+++|...+..+
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistv--------------gid~rnkli~~~~~kvklqiwdtagqerfrsvt~ay 67 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTV--------------GIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAY 67 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeee--------------eeccccceeccCCcEEEEEEeeccchHHHhhhhHhh
Confidence 689999999999876644333211 11222 777777888888888999999999999999999999
Q ss_pred HhhcceEEEEeeCCC-CCchhhHHHHHHHHHcC---CEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceEEE
Q 005713 173 LNMVEGVLLVVDSVE-GPMPQTRFVLKKALEFG---HAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIY 248 (681)
Q Consensus 173 l~~aD~~llVvDa~~-g~~~qt~~~l~~~~~~g---ip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~ 248 (681)
++.+|..+|++|... ..+...+.|+..+.+++ +.+.++.||+|+...+.- .-++-+.+.+.. .+|+..
T Consensus 68 yrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v-~~ddg~kla~~y-------~ipfme 139 (192)
T KOG0083|consen 68 YRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAV-KRDDGEKLAEAY-------GIPFME 139 (192)
T ss_pred hcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhcc-ccchHHHHHHHH-------CCCcee
Confidence 999999999999655 44555666776666654 668899999998643311 112222222222 468999
Q ss_pred eecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 249 ASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 249 ~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
+||++|. +++..|-.|.+.+
T Consensus 140 tsaktg~----------nvd~af~~ia~~l 159 (192)
T KOG0083|consen 140 TSAKTGF----------NVDLAFLAIAEEL 159 (192)
T ss_pred ccccccc----------cHhHHHHHHHHHH
Confidence 9999999 7777777776654
No 281
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.40 E-value=1.2e-12 Score=120.91 Aligned_cols=158 Identities=19% Similarity=0.220 Sum_probs=111.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEee-CCeEEEEEeCCCccchhH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY-NDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~i~iiDTPGh~df~~ 167 (681)
..++.+||.+-+|||+|+..+....+..-...++ |+.+.+....+.- ...++++|||+|++.|..
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptv--------------gvdffarlie~~pg~riklqlwdtagqerfrs 73 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTV--------------GVDFFARLIELRPGYRIKLQLWDTAGQERFRS 73 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCcc--------------chHHHHHHHhcCCCcEEEEEEeeccchHHHHH
Confidence 4678999999999999999998766654444444 4444443333332 236899999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCC-CchhhHHHHHHHHHc-C----CEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 168 EVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEF-G----HAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g-~~~qt~~~l~~~~~~-g----ip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
.+.++++.+-++++|+|.+.. .++....|+..+..+ + +-+.+|..|+|+...+ +-..++.+.+.+.
T Consensus 74 itksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqR-qVt~EEaEklAa~------- 145 (213)
T KOG0091|consen 74 ITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQR-QVTAEEAEKLAAS------- 145 (213)
T ss_pred HHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhc-cccHHHHHHHHHh-------
Confidence 999999999999999997763 344444455544432 2 2367889999998654 2223333333322
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
+.+.++.+||++|. |+++.++.+.+.+
T Consensus 146 hgM~FVETSak~g~----------NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 146 HGMAFVETSAKNGC----------NVEEAFDMLAQEI 172 (213)
T ss_pred cCceEEEecccCCC----------cHHHHHHHHHHHH
Confidence 34569999999999 7888888877654
No 282
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.38 E-value=3.1e-12 Score=111.78 Aligned_cols=85 Identities=21% Similarity=0.327 Sum_probs=72.9
Q ss_pred eEEEEEEeeecCCC-ceEEEEEeecccccCCCEEEEccCC------CceeeeEEEeEEEeeccceeecceecCCCEEEEe
Q 005713 289 LQMLATNLEYDEHK-GRIAIGRLHAGVLRKGMEVRVCTSE------DSCRYARISELFVYEKFSRVSAEIVAAGDICAVC 361 (681)
Q Consensus 289 ~~~~V~~~~~d~~~-G~v~~grV~sG~lk~gd~v~~~~~~------~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~ 361 (681)
+.++||++.++++. |+++++||+||+|++||.|+++..+ +.....+|.+|+.+.|.++.++++|.|||||++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 46789999999998 6799999999999999999886433 2223469999999999999999999999999999
Q ss_pred cccccccCCeee
Q 005713 362 GIDDIQIGETIA 373 (681)
Q Consensus 362 gl~~~~~Gdtl~ 373 (681)
|+++...+.+..
T Consensus 81 gl~~~~~~~~t~ 92 (94)
T cd04090 81 GIDSSIVKTATI 92 (94)
T ss_pred CcchheeceEEe
Confidence 999887776543
No 283
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.38 E-value=1.7e-12 Score=113.12 Aligned_cols=85 Identities=31% Similarity=0.481 Sum_probs=74.6
Q ss_pred eEEEEEEeeecC-CCceEEEEEeecccccCCCEEEEccCC------CceeeeEEEeEEEeeccceeecceecCCCEEEEe
Q 005713 289 LQMLATNLEYDE-HKGRIAIGRLHAGVLRKGMEVRVCTSE------DSCRYARISELFVYEKFSRVSAEIVAAGDICAVC 361 (681)
Q Consensus 289 ~~~~V~~~~~d~-~~G~v~~grV~sG~lk~gd~v~~~~~~------~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~ 361 (681)
+.++|+|+.+++ +.|+++++||++|+|++||.|++...+ +.....+|.+|+.+.|.++.++++|.|||||+|.
T Consensus 1 ~v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~ 80 (93)
T cd03700 1 LVMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV 80 (93)
T ss_pred CeEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE
Confidence 357899999999 999999999999999999999887633 1222358999999999999999999999999999
Q ss_pred cccccccCCeee
Q 005713 362 GIDDIQIGETIA 373 (681)
Q Consensus 362 gl~~~~~Gdtl~ 373 (681)
|++++.+|||.+
T Consensus 81 g~~~~~~g~~~~ 92 (93)
T cd03700 81 GLDQLKSGTTAT 92 (93)
T ss_pred CCccCceEeEec
Confidence 999999999864
No 284
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.38 E-value=1.1e-12 Score=119.03 Aligned_cols=113 Identities=20% Similarity=0.214 Sum_probs=76.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~ 170 (681)
+|+|+|+.|+|||||+++|+....... ...+...+.++......+......+.|||++|+..+.....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 68 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDN------------SVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQ 68 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------------------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCccc------------ccccccCCCcEEEEEEEecCCceEEEEEecCccceeccccc
Confidence 589999999999999999998765400 00011123444444444555555699999999998887777
Q ss_pred HHHhhcceEEEEeeCCCCC-chhhHH---HHHHHHH--cCCEEEEEEeecC
Q 005713 171 RILNMVEGVLLVVDSVEGP-MPQTRF---VLKKALE--FGHAVVVVVNKID 215 (681)
Q Consensus 171 ~~l~~aD~~llVvDa~~g~-~~qt~~---~l~~~~~--~gip~ivviNKiD 215 (681)
..+..+|++|+|+|.++.. ..+... ++..... .++|+++|.||.|
T Consensus 69 ~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 69 FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 7799999999999988743 222222 2333332 3599999999998
No 285
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=2.7e-13 Score=124.57 Aligned_cols=164 Identities=18% Similarity=0.185 Sum_probs=113.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC---------CeEEEEEe
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN---------DTKINIID 158 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---------~~~i~iiD 158 (681)
...+...+|.+|+||||++-+.....+...-..++ ||.+.-+..-+.-. ...++|||
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTV--------------GIDFreKrvvY~s~gp~g~gr~~rihLQlWD 73 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTV--------------GIDFREKRVVYNSSGPGGGGRGQRIHLQLWD 73 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEe--------------ecccccceEEEeccCCCCCCcceEEEEeeec
Confidence 45567789999999999998887766554333333 44444333333221 24788999
Q ss_pred CCCccchhHHHHHHHhhcceEEEEeeCCC-CCchhhHHHHHHHHHc----CCEEEEEEeecCCCCCCcccchhhHHHHHH
Q 005713 159 TPGHSDFGGEVERILNMVEGVLLVVDSVE-GPMPQTRFVLKKALEF----GHAVVVVVNKIDRPSARPDYVINSTFELFI 233 (681)
Q Consensus 159 TPGh~df~~e~~~~l~~aD~~llVvDa~~-g~~~qt~~~l~~~~~~----gip~ivviNKiD~~~~~~~~~~~ei~~~~~ 233 (681)
|+|++.|...+...++.|-+.||++|.+. -.+-.++.|+.+++.+ +--++++.||+|+.+.+. -..++...+.
T Consensus 74 TAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~-Vs~~qa~~La- 151 (219)
T KOG0081|consen 74 TAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRV-VSEDQAAALA- 151 (219)
T ss_pred cccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhh-hhHHHHHHHH-
Confidence 99999999999999999999999999664 3455667777777765 334899999999986541 1122222322
Q ss_pred HhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 234 ELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 234 ~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
++..+|+|.+||-+|.|+.. .++.|++.+.+.+.
T Consensus 152 ------~kyglPYfETSA~tg~Nv~k------ave~LldlvM~Rie 185 (219)
T KOG0081|consen 152 ------DKYGLPYFETSACTGTNVEK------AVELLLDLVMKRIE 185 (219)
T ss_pred ------HHhCCCeeeeccccCcCHHH------HHHHHHHHHHHHHH
Confidence 23457999999999995433 45556666665553
No 286
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.37 E-value=4.1e-12 Score=126.27 Aligned_cols=114 Identities=20% Similarity=0.283 Sum_probs=85.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh---
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG--- 166 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~--- 166 (681)
++|+++|.+|+|||||+|+|++......... ..+.|.........+.+..+++|||||..++.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~--------------~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~ 66 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLS--------------ASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSP 66 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccC--------------CCCcccccceeeEEECCeEEEEEECcCCCCccCCh
Confidence 5799999999999999999998654322111 22667777777778899999999999987653
Q ss_pred ----HHHHHHH----hhcceEEEEeeCCCCCchhhHHHHHHHHHc-C----CEEEEEEeecCCCC
Q 005713 167 ----GEVERIL----NMVEGVLLVVDSVEGPMPQTRFVLKKALEF-G----HAVVVVVNKIDRPS 218 (681)
Q Consensus 167 ----~e~~~~l----~~aD~~llVvDa~~g~~~qt~~~l~~~~~~-g----ip~ivviNKiD~~~ 218 (681)
.++.+.+ ..+|++|+|+|+.. ........++.+.+. | .++++++|+.|...
T Consensus 67 ~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~ 130 (196)
T cd01852 67 EQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLE 130 (196)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccC
Confidence 2222222 34789999999887 777777777777664 4 57899999999764
No 287
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.35 E-value=1.8e-12 Score=108.10 Aligned_cols=74 Identities=26% Similarity=0.500 Sum_probs=64.5
Q ss_pred cCCCeeeEEEeecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHHhhhhhc-ceEE
Q 005713 386 VEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENMRRE-GYEF 464 (681)
Q Consensus 386 ~~~P~~~~~~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~e~lrre-g~e~ 464 (681)
+|+|++++++.+.+ ..+ ..+|.++|.++.++||+|++..+++++++.++|+|++||+|++++|+++ |+++
T Consensus 1 ~p~Pv~~~~i~p~~----~~d-----~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v~v 71 (75)
T PF14492_consen 1 FPPPVLSVAIEPKN----KED-----EPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFGVEV 71 (75)
T ss_dssp SSS-SEEEEEEESS----HHH-----HHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCEBE
T ss_pred CCCCeEEEEEEECC----HhH-----HHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHCCee
Confidence 57899999999875 333 6899999999999999999999999999999999999999999999876 9999
Q ss_pred EEcC
Q 005713 465 MVGP 468 (681)
Q Consensus 465 ~~~~ 468 (681)
.+++
T Consensus 72 ~~~~ 75 (75)
T PF14492_consen 72 EFGK 75 (75)
T ss_dssp EEE-
T ss_pred EecC
Confidence 8763
No 288
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.34 E-value=6.6e-12 Score=124.57 Aligned_cols=159 Identities=18% Similarity=0.200 Sum_probs=115.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
..+|+++|..|+|||+|+-+++...+.....++.+ +...+...+......+.|+||+|..+|..+
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie---------------d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~ 67 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE---------------DSYRKELTVDGEVCMLEILDTAGQEEFSAM 67 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCcc---------------ccceEEEEECCEEEEEEEEcCCCcccChHH
Confidence 46899999999999999999998877655444432 233444555555578889999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCC-chhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 169 VERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
...+++.+|+.++|++.++-. +.....++..+.+ ..+|+++|+||+|+...+ .-..++.+.+. ....
T Consensus 68 ~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R-~V~~eeg~~la-------~~~~ 139 (196)
T KOG0395|consen 68 RDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERER-QVSEEEGKALA-------RSWG 139 (196)
T ss_pred HHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhcc-ccCHHHHHHHH-------HhcC
Confidence 999999999999999988733 3333334444422 247999999999997653 22223333332 2245
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
++++++||+.+. +++++|..++..+-.
T Consensus 140 ~~f~E~Sak~~~----------~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 140 CAFIETSAKLNY----------NVDEVFYELVREIRL 166 (196)
T ss_pred CcEEEeeccCCc----------CHHHHHHHHHHHHHh
Confidence 679999999998 889999988876644
No 289
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.33 E-value=8.9e-12 Score=125.74 Aligned_cols=169 Identities=17% Similarity=0.220 Sum_probs=114.3
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEe-eeeEEeeCCeEEEEEeCCCccc
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILS-KNTSITYNDTKINIIDTPGHSD 164 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~-~~~~~~~~~~~i~iiDTPGh~d 164 (681)
.....||.++|..|+|||||+|+|+.........- |++... ......+.+..++||||||..|
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~v----------------g~~t~~~~~~~~~~~~~~l~lwDtPG~gd 99 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKV----------------GVGTDITTRLRLSYDGENLVLWDTPGLGD 99 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeec----------------ccCCCchhhHHhhccccceEEecCCCccc
Confidence 44678999999999999999999985433211100 111111 1112345568899999999876
Q ss_pred -------hhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHc--CCEEEEEEeecCCCCC----Ccc------cch
Q 005713 165 -------FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF--GHAVVVVVNKIDRPSA----RPD------YVI 225 (681)
Q Consensus 165 -------f~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~--gip~ivviNKiD~~~~----~~~------~~~ 225 (681)
+......++...|.+++++|+.+.........++..... +.++++++|.+|+... +.. ...
T Consensus 100 g~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~ 179 (296)
T COG3596 100 GKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIK 179 (296)
T ss_pred chhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHH
Confidence 666678889999999999999998777777777776654 4799999999998632 111 011
Q ss_pred hhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 226 NSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 226 ~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
+-+......++.. -+.--|++++|+..+| |+..|+.+++..+|.-
T Consensus 180 qfi~~k~~~~~~~-~q~V~pV~~~~~r~~w----------gl~~l~~ali~~lp~e 224 (296)
T COG3596 180 QFIEEKAEALGRL-FQEVKPVVAVSGRLPW----------GLKELVRALITALPVE 224 (296)
T ss_pred HHHHHHHHHHHHH-HhhcCCeEEeccccCc----------cHHHHHHHHHHhCccc
Confidence 1111111111110 0113489999988888 9999999999999843
No 290
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.32 E-value=4.6e-11 Score=125.06 Aligned_cols=123 Identities=23% Similarity=0.345 Sum_probs=84.2
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCccchh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDFG 166 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~ 166 (681)
..+|+++|++|+|||||+++|+........... +.......+.+++......+..++ .+++||||||+.|+.
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~------~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~ 77 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPP------DPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNI 77 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCC------CccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccc
Confidence 468999999999999999999876543221100 001112233444555555666666 579999999987653
Q ss_pred HH---------------------HHHHHh-------hcceEEEEeeCCC-CCchhhHHHHHHHHHcCCEEEEEEeecCCC
Q 005713 167 GE---------------------VERILN-------MVEGVLLVVDSVE-GPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (681)
Q Consensus 167 ~e---------------------~~~~l~-------~aD~~llVvDa~~-g~~~qt~~~l~~~~~~gip~ivviNKiD~~ 217 (681)
.. .....+ .+|++++++++.. ++...+.+.++.+.. ++|+|+|+||+|+.
T Consensus 78 ~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l 156 (276)
T cd01850 78 NNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTL 156 (276)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcC
Confidence 21 111112 3788999999774 777777888888875 79999999999986
Q ss_pred C
Q 005713 218 S 218 (681)
Q Consensus 218 ~ 218 (681)
.
T Consensus 157 ~ 157 (276)
T cd01850 157 T 157 (276)
T ss_pred C
Confidence 4
No 291
>COG2262 HflX GTPases [General function prediction only]
Probab=99.32 E-value=1.9e-11 Score=129.88 Aligned_cols=155 Identities=23% Similarity=0.293 Sum_probs=107.1
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC-CeEEEEEeCCCccc
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN-DTKINIIDTPGHSD 164 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-~~~i~iiDTPGh~d 164 (681)
...++.|+++|-.|+|||||+|+|++........ -=.|.+.+.-.+.+. +..+.+-||-|+-+
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~----------------LFATLdpttR~~~l~~g~~vlLtDTVGFI~ 252 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQ----------------LFATLDPTTRRIELGDGRKVLLTDTVGFIR 252 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeecccc----------------ccccccCceeEEEeCCCceEEEecCccCcc
Confidence 4578999999999999999999998532211111 124666666677776 58999999999733
Q ss_pred ---------hhHHHHHHHhhcceEEEEeeCCCC-CchhhHHHHHHHHHc---CCEEEEEEeecCCCCCCcccchhhHHHH
Q 005713 165 ---------FGGEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFEL 231 (681)
Q Consensus 165 ---------f~~e~~~~l~~aD~~llVvDa~~g-~~~qt~~~l~~~~~~---gip~ivviNKiD~~~~~~~~~~~ei~~~ 231 (681)
|... ......+|.+|.|||+++. ...+-..+...+.+. .+|+|+|.||+|+..... ....+
T Consensus 253 ~LP~~LV~AFksT-LEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~--~~~~~--- 326 (411)
T COG2262 253 DLPHPLVEAFKST-LEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE--ILAEL--- 326 (411)
T ss_pred cCChHHHHHHHHH-HHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh--hhhhh---
Confidence 3222 2234569999999999985 333444455555554 479999999999764321 11111
Q ss_pred HHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 232 FIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 232 ~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
.... . ..+++||++|+ |++.|++.|.+.++.
T Consensus 327 ----~~~~---~-~~v~iSA~~~~----------gl~~L~~~i~~~l~~ 357 (411)
T COG2262 327 ----ERGS---P-NPVFISAKTGE----------GLDLLRERIIELLSG 357 (411)
T ss_pred ----hhcC---C-CeEEEEeccCc----------CHHHHHHHHHHHhhh
Confidence 1111 1 38999999999 999999999988763
No 292
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.29 E-value=4.2e-11 Score=123.58 Aligned_cols=115 Identities=25% Similarity=0.294 Sum_probs=82.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh-
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG- 166 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~- 166 (681)
..++|+|.|++|+|||||+..+......+..... +|-.....+++++..+|++|||||.-|--
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPF----------------TTK~i~vGhfe~~~~R~QvIDTPGlLDRPl 230 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPF----------------TTKGIHVGHFERGYLRIQVIDTPGLLDRPL 230 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCc----------------cccceeEeeeecCCceEEEecCCcccCCCh
Confidence 5789999999999999999999887666555443 34555667889999999999999975432
Q ss_pred -------HHHHHHHh-hcceEEEEeeCCC--CCc-hhhHHHHHHHHH-cCCEEEEEEeecCCCC
Q 005713 167 -------GEVERILN-MVEGVLLVVDSVE--GPM-PQTRFVLKKALE-FGHAVVVVVNKIDRPS 218 (681)
Q Consensus 167 -------~e~~~~l~-~aD~~llVvDa~~--g~~-~qt~~~l~~~~~-~gip~ivviNKiD~~~ 218 (681)
.....+++ ..+.+|+++|+++ |.. +....+|..... ++.|+++|+||+|..+
T Consensus 231 ~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~ 294 (346)
T COG1084 231 EERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIAD 294 (346)
T ss_pred HHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccc
Confidence 11122333 4678999999886 332 222334444443 4679999999999764
No 293
>PTZ00099 rab6; Provisional
Probab=99.29 E-value=1.8e-11 Score=119.63 Aligned_cols=128 Identities=20% Similarity=0.235 Sum_probs=89.6
Q ss_pred ceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH---cCCEEEEEEe
Q 005713 137 GITILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE---FGHAVVVVVN 212 (681)
Q Consensus 137 GiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~---~gip~ivviN 212 (681)
|+........+..+...+.||||||+..|...+..+++.+|++|+|+|+++... .....++..+.. .++|+++|+|
T Consensus 14 g~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgN 93 (176)
T PTZ00099 14 GIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGN 93 (176)
T ss_pred ceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEE
Confidence 444444444444455789999999999999999999999999999999887432 222344444433 2578999999
Q ss_pred ecCCCCCCcccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCc
Q 005713 213 KIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPR 282 (681)
Q Consensus 213 KiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 282 (681)
|+|+...+. ...++....... ..++++++||++|. |+..+|+.|.+.+|...
T Consensus 94 K~DL~~~~~-v~~~e~~~~~~~-------~~~~~~e~SAk~g~----------nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 94 KTDLGDLRK-VTYEEGMQKAQE-------YNTMFHETSAKAGH----------NIKVLFKKIAAKLPNLD 145 (176)
T ss_pred CcccccccC-CCHHHHHHHHHH-------cCCEEEEEECCCCC----------CHHHHHHHHHHHHHhcc
Confidence 999864321 112222222221 23468999999999 99999999999887543
No 294
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=1.3e-11 Score=117.55 Aligned_cols=159 Identities=18% Similarity=0.200 Sum_probs=115.7
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
.+-.+|+++|--++||||++..|-....... . -|+....-.++|++..+++||..|+..++
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-v------------------PTiGfnVE~v~ykn~~f~vWDvGGq~k~R 75 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-V------------------PTIGFNVETVEYKNISFTVWDVGGQEKLR 75 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-C------------------CccccceeEEEEcceEEEEEecCCCcccc
Confidence 3457799999999999999988854433221 1 25566667789999999999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCC-chhhHHHHHHHH-H---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 167 GEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKAL-E---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~-~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
..+..+++..+++|+|||+++.. ....++.+.... . .+.|++++.||.|++++-. ..++.+.+.-.....
T Consensus 76 ~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als---~~ei~~~L~l~~l~~-- 150 (181)
T KOG0070|consen 76 PLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS---AAEITNKLGLHSLRS-- 150 (181)
T ss_pred cchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC---HHHHHhHhhhhccCC--
Confidence 99999999999999999998732 223333333322 2 2689999999999987743 334444332211111
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
..+-+-.++|.+|. |+.+-++++.+.+.
T Consensus 151 ~~w~iq~~~a~~G~----------GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 151 RNWHIQSTCAISGE----------GLYEGLDWLSNNLK 178 (181)
T ss_pred CCcEEeeccccccc----------cHHHHHHHHHHHHh
Confidence 35668899999998 88888888877664
No 295
>PRK09866 hypothetical protein; Provisional
Probab=99.29 E-value=4.8e-11 Score=133.35 Aligned_cols=115 Identities=18% Similarity=0.155 Sum_probs=83.6
Q ss_pred eEEEEEeCCCccc-----hhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCC--EEEEEEeecCCCCCCcccc
Q 005713 152 TKINIIDTPGHSD-----FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGH--AVVVVVNKIDRPSARPDYV 224 (681)
Q Consensus 152 ~~i~iiDTPGh~d-----f~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gi--p~ivviNKiD~~~~~~~~~ 224 (681)
..+.|+||||... +...+...+..+|.+|+|+|+..+.....+.+++.+.+.+. |+++|+||+|+.+.. ...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dre-edd 308 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRN-SDD 308 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcc-cch
Confidence 5789999999733 34456678999999999999998888888888888888774 999999999985322 222
Q ss_pred hhhHHHHHHHhhcccccCCc-eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 225 INSTFELFIELNATDEQCDF-QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 225 ~~ei~~~~~~l~~~~~~~~~-pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.+.+...+...-.. ....+ .+|++||++|. |+..|++.|..+-
T Consensus 309 kE~Lle~V~~~L~q-~~i~f~eIfPVSAlkG~----------nid~LLdeI~~~~ 352 (741)
T PRK09866 309 ADQVRALISGTLMK-GCITPQQIFPVSSMWGY----------LANRARHELANNG 352 (741)
T ss_pred HHHHHHHHHHHHHh-cCCCCceEEEEeCCCCC----------CHHHHHHHHHhCC
Confidence 34444443221000 01112 49999999999 8999999998753
No 296
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.27 E-value=3.8e-11 Score=122.88 Aligned_cols=153 Identities=24% Similarity=0.389 Sum_probs=106.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeE-EEEEeCCCccc--
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTK-INIIDTPGHSD-- 164 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~-i~iiDTPGh~d-- 164 (681)
.+-.|+++|-+++|||||+++|......+..... +|+..+...+.|++.. +.+-|.||.-.
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~YaF----------------TTL~P~iG~v~yddf~q~tVADiPGiI~GA 258 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAF----------------TTLRPHIGTVNYDDFSQITVADIPGIIEGA 258 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccce----------------eeeccccceeeccccceeEeccCccccccc
Confidence 3567999999999999999999876554444433 4677777778888765 99999999621
Q ss_pred -----hhHHHHHHHhhcceEEEEeeCCCC----CchhhHHHHHHHHHc-----CCEEEEEEeecCCCCCCcccchhhHHH
Q 005713 165 -----FGGEVERILNMVEGVLLVVDSVEG----PMPQTRFVLKKALEF-----GHAVVVVVNKIDRPSARPDYVINSTFE 230 (681)
Q Consensus 165 -----f~~e~~~~l~~aD~~llVvDa~~g----~~~qt~~~l~~~~~~-----gip~ivviNKiD~~~~~~~~~~~ei~~ 230 (681)
......+.+..|+..++|+|.+.+ +..|...++..+..+ ..|.++|+||+|.+++. + +-+.+
T Consensus 259 h~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-~---~~l~~ 334 (366)
T KOG1489|consen 259 HMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE-K---NLLSS 334 (366)
T ss_pred cccCcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH-H---HHHHH
Confidence 223445667788999999998875 333444444444433 36899999999986443 1 11233
Q ss_pred HHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHh
Q 005713 231 LFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (681)
Q Consensus 231 ~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~ 276 (681)
+...+.. ..|+++||++|+ ++.+|++.+..
T Consensus 335 L~~~lq~------~~V~pvsA~~~e----------gl~~ll~~lr~ 364 (366)
T KOG1489|consen 335 LAKRLQN------PHVVPVSAKSGE----------GLEELLNGLRE 364 (366)
T ss_pred HHHHcCC------CcEEEeeecccc----------chHHHHHHHhh
Confidence 3333322 139999999998 88888887754
No 297
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.25 E-value=2.3e-11 Score=118.11 Aligned_cols=113 Identities=22% Similarity=0.363 Sum_probs=68.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEee---CCeEEEEEeCCCccch
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY---NDTKINIIDTPGHSDF 165 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~---~~~~i~iiDTPGh~df 165 (681)
.+.|.++|+.|+|||+|..+|.+.... .++ +++ .....+.. .+..+.+||+|||...
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~----~T~---------------tS~-e~n~~~~~~~~~~~~~~lvD~PGH~rl 62 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTV----PTV---------------TSM-ENNIAYNVNNSKGKKLRLVDIPGHPRL 62 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS-------B------------------S-SEEEECCGSSTCGTCECEEEETT-HCC
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcC----Cee---------------ccc-cCCceEEeecCCCCEEEEEECCCcHHH
Confidence 467999999999999999999986322 111 011 11111222 3468999999999999
Q ss_pred hHHHHHH---HhhcceEEEEeeCCCCCchh---hHHHHHHH----H--HcCCEEEEEEeecCCCCCCcc
Q 005713 166 GGEVERI---LNMVEGVLLVVDSVEGPMPQ---TRFVLKKA----L--EFGHAVVVVVNKIDRPSARPD 222 (681)
Q Consensus 166 ~~e~~~~---l~~aD~~llVvDa~~g~~~q---t~~~l~~~----~--~~gip~ivviNKiD~~~~~~~ 222 (681)
....... +..+.++|+|||++. ...+ +-+.|..+ . ..++|++|+.||.|+..+.+.
T Consensus 63 r~~~~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~ 130 (181)
T PF09439_consen 63 RSKLLDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPP 130 (181)
T ss_dssp CHHHHHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---H
T ss_pred HHHHHHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCH
Confidence 8877765 888999999999874 2222 22222111 1 246899999999999887653
No 298
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.4e-11 Score=115.54 Aligned_cols=169 Identities=15% Similarity=0.183 Sum_probs=117.3
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcC-ccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAK-VFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~-~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d 164 (681)
.+.-.+|.|+|.-++|||||++++-..-. ..... +.. +--.|+.....++...+..+.+||..|+..
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l--------~~~----ki~~tvgLnig~i~v~~~~l~fwdlgGQe~ 81 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGL--------NPS----KITPTVGLNIGTIEVCNAPLSFWDLGGQES 81 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCC--------CHH----HeecccceeecceeeccceeEEEEcCChHH
Confidence 34567899999999999999999854311 11100 000 002345555566677788999999999999
Q ss_pred hhHHHHHHHhhcceEEEEeeCCC-CCchhhH----HHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccc
Q 005713 165 FGGEVERILNMVEGVLLVVDSVE-GPMPQTR----FVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (681)
Q Consensus 165 f~~e~~~~l~~aD~~llVvDa~~-g~~~qt~----~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~ 239 (681)
....+..++..|+++++||||.+ ..+.... .+...-...|+|+++.+||-|+.++- ...++...|.. ....
T Consensus 82 lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~---~~~El~~~~~~-~e~~ 157 (197)
T KOG0076|consen 82 LRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM---EAAELDGVFGL-AELI 157 (197)
T ss_pred HHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh---hHHHHHHHhhh-hhhc
Confidence 99999999999999999999998 2333222 33333334589999999999987653 23444444432 2223
Q ss_pred ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 240 ~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
...+.|+.++||++|. |+.+-.++++..++.
T Consensus 158 ~~rd~~~~pvSal~ge----------gv~egi~w~v~~~~k 188 (197)
T KOG0076|consen 158 PRRDNPFQPVSALTGE----------GVKEGIEWLVKKLEK 188 (197)
T ss_pred CCccCccccchhhhcc----------cHHHHHHHHHHHHhh
Confidence 3346799999999999 777777777766654
No 299
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=1.8e-11 Score=129.17 Aligned_cols=230 Identities=24% Similarity=0.265 Sum_probs=152.7
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccc---------------cceeeeeeccchhhcccceeEEeeeeEEeeCC
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN---------------QTVKERIMDSNDLERERGITILSKNTSITYND 151 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~---------------~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~ 151 (681)
...+||+++||+++||||+.. +.++.+..+ .....+++|....|++||++|......+....
T Consensus 5 ~~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~k 81 (391)
T KOG0052|consen 5 KIHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSK 81 (391)
T ss_pred ccccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeeccccee
Confidence 356899999999999999877 222222111 11126899999999999999999999999889
Q ss_pred eEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCC-------CchhhHHHHHHHHHcCC-EEEEEEeecCCCCCCccc
Q 005713 152 TKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-------PMPQTRFVLKKALEFGH-AVVVVVNKIDRPSARPDY 223 (681)
Q Consensus 152 ~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g-------~~~qt~~~l~~~~~~gi-p~ivviNKiD~~~~~~~~ 223 (681)
+.++++|.|||.||...+.....++|+++++|.+.-| ...||+++...+..+|+ ++++.+||+|-....+
T Consensus 82 ~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~~~-- 159 (391)
T KOG0052|consen 82 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY-- 159 (391)
T ss_pred EEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCCCc--
Confidence 9999999999999999998889999999999988432 34699999999999984 6889999999653221
Q ss_pred chhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCc
Q 005713 224 VINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKG 303 (681)
Q Consensus 224 ~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G 303 (681)
.....++..+... .+-. +.|. +.... ..+++...+.|
T Consensus 160 s~~r~~ei~k~~~---------~~~~--~~g~----------n~~~~----------------------~~~~~~~~g~~ 196 (391)
T KOG0052|consen 160 SEARYEEIKKEVS---------SYIK--KIGY----------NPAAV----------------------LQDVYKIGGIG 196 (391)
T ss_pred cccchhhhheeee---------eeee--cccc----------CChhh----------------------hccceeeccee
Confidence 1111111110000 0000 0111 11000 11222222233
Q ss_pred eEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEe--c--ccccccCCeeeccCC
Q 005713 304 RIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC--G--IDDIQIGETIADKVS 377 (681)
Q Consensus 304 ~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~--g--l~~~~~Gdtl~~~~~ 377 (681)
+..|.+++++.+...+..... ++...-. ++..-.++.+||.+++. + ..++..|+.+.+..+
T Consensus 197 ------~~t~iie~~~~v~~~~~~~~~---~vk~~~~----~~~a~s~~~p~~~vG~~~~~v~v~~i~~gnV~~dsK~ 261 (391)
T KOG0052|consen 197 ------VETGISEPGMDVTFAPSGVTT---EVKSVKV----HHEAGSEDLPGDNVGFNVKNVSVKDIDRGNVVGDSKN 261 (391)
T ss_pred ------eeeeeccCccceecccccccc---ccccEEE----EeccCccCCCcceeeeecccCccCcccccceeccccc
Confidence 778889999988887776532 4444422 22333478899999984 2 457778887766554
No 300
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=2.5e-10 Score=103.22 Aligned_cols=156 Identities=18% Similarity=0.220 Sum_probs=111.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
-.+|..+|-.++||||++-.|.-....... -|+....-.+.|++.++|+||..|+...+..
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~~i-------------------pTvGFnvetVtykN~kfNvwdvGGqd~iRpl 77 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVTTI-------------------PTVGFNVETVTYKNVKFNVWDVGGQDKIRPL 77 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCcccc-------------------cccceeEEEEEeeeeEEeeeeccCchhhhHH
Confidence 466999999999999999998755433211 1333444567889999999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCC-CchhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 169 VERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g-~~~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
+.+++....++|+|+|+.+. -....+.-+..+.. ...+++|..||-|++++. ...++.+.|. +.. .....
T Consensus 78 WrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~---~pqei~d~le-Le~-~r~~~ 152 (180)
T KOG0071|consen 78 WRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM---KPQEIQDKLE-LER-IRDRN 152 (180)
T ss_pred HHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc---CHHHHHHHhc-ccc-ccCCc
Confidence 99999999999999997763 22333333333322 257899999999999875 3455666552 222 22235
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
+-+.++||.+|. ++.+-|.++.+.+
T Consensus 153 W~vqp~~a~~gd----------gL~eglswlsnn~ 177 (180)
T KOG0071|consen 153 WYVQPSCALSGD----------GLKEGLSWLSNNL 177 (180)
T ss_pred cEeeccccccch----------hHHHHHHHHHhhc
Confidence 668899999998 6666666666544
No 301
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.19 E-value=3.2e-10 Score=120.73 Aligned_cols=177 Identities=17% Similarity=0.141 Sum_probs=102.4
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCcccc--------ccce--e-eeeeccchhh---cccceeEEeeeeEE----
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRD--------NQTV--K-ERIMDSNDLE---RERGITILSKNTSI---- 147 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~--------~~~~--~-~~~~D~~~~E---~erGiTi~~~~~~~---- 147 (681)
..+...|+|.|.+|+|||||++.|......... +... . .-..|....+ ...++-+.+.....
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~ 132 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 132 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence 345678999999999999999998754321110 0000 0 0011211111 11122222211111
Q ss_pred ------------eeCCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecC
Q 005713 148 ------------TYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKID 215 (681)
Q Consensus 148 ------------~~~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD 215 (681)
...++.+.|+||+|...-... +...+|.+++|++...|..-|... . ....+.-++|+||+|
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~-gi~E~aDIiVVNKaD 205 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---K-GIMELADLIVINKAD 205 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---h-hhhhhhheEEeehhc
Confidence 224678999999998633222 678899999998744443333321 0 011223489999999
Q ss_pred CCCCC-cccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 216 RPSAR-PDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 216 ~~~~~-~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
+.... ......++...+.-+.........|++++||++|. |+++|++.|.++++
T Consensus 206 l~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~----------GIdeL~~~I~~~~~ 260 (332)
T PRK09435 206 GDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGE----------GIDEIWQAIEDHRA 260 (332)
T ss_pred ccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 87532 23344445444432221111234589999999999 99999999998876
No 302
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.2e-10 Score=125.47 Aligned_cols=161 Identities=19% Similarity=0.258 Sum_probs=114.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc-hh
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD-FG 166 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d-f~ 166 (681)
.-.+|+|+|.+|+|||||+|+|.+....+..+.. |+|.+.-.+.++.+|+++.|+||+|... -.
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~---------------GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~ 331 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVP---------------GTTRDAIEAQVTVNGVPVRLSDTAGIREESN 331 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCC---------------CcchhhheeEeecCCeEEEEEeccccccccC
Confidence 4578999999999999999999988766655443 8999999999999999999999999866 21
Q ss_pred --------HHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcC------------CEEEEEEeecCCCCCCcccchh
Q 005713 167 --------GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFG------------HAVVVVVNKIDRPSARPDYVIN 226 (681)
Q Consensus 167 --------~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~g------------ip~ivviNKiD~~~~~~~~~~~ 226 (681)
......+..+|.+++|+|+.++.+.+.....+.+...+ .|+|++.||+|+...-.+.. .
T Consensus 332 ~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~-~ 410 (531)
T KOG1191|consen 332 DGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMT-K 410 (531)
T ss_pred ChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcccccc-C
Confidence 22234577899999999998888887777776666543 36788888888754311000 0
Q ss_pred hHHHHHHHhhcccccCCce-EEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 227 STFELFIELNATDEQCDFQ-AIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 227 ei~~~~~~l~~~~~~~~~p-vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
..... ..+ ...-.+| +.++|++++. |+..|.+++.+.+
T Consensus 411 ~~~~~---~~~-~~~~~~~i~~~vs~~tke----------g~~~L~~all~~~ 449 (531)
T KOG1191|consen 411 IPVVY---PSA-EGRSVFPIVVEVSCTTKE----------GCERLSTALLNIV 449 (531)
T ss_pred Cceec---ccc-ccCcccceEEEeeechhh----------hHHHHHHHHHHHH
Confidence 00000 011 0111234 4559999998 8888888887654
No 303
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.16 E-value=1e-11 Score=116.40 Aligned_cols=158 Identities=16% Similarity=0.176 Sum_probs=112.1
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
+...+++|+|..++||||++.++++.-+......++ |+.+......+...+..+.+|||+|+++|.
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktI--------------gvdflerqi~v~~Edvr~mlWdtagqeEfD 83 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTI--------------GVDFLERQIKVLIEDVRSMLWDTAGQEEFD 83 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhcccccccccccc--------------chhhhhHHHHhhHHHHHHHHHHhccchhHH
Confidence 456889999999999999999999876665554444 333333334455567788999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCC-CchhhHHHHHHHHHc--CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 167 GEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g-~~~qt~~~l~~~~~~--gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
..+..+++.|.+.+||++.++. .+..+.+|.+..... .+|.++|-||+|+.+... -...++..+.+.+.
T Consensus 84 aItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~-~~~~evE~lak~l~------- 155 (246)
T KOG4252|consen 84 AITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQ-MDKGEVEGLAKKLH------- 155 (246)
T ss_pred HHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhh-cchHHHHHHHHHhh-------
Confidence 9999999999999999998873 345566666665543 699999999999975421 11122333332222
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHh
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~ 276 (681)
..++-+|++... ++...|..+.+
T Consensus 156 ~RlyRtSvked~----------NV~~vF~YLae 178 (246)
T KOG4252|consen 156 KRLYRTSVKEDF----------NVMHVFAYLAE 178 (246)
T ss_pred hhhhhhhhhhhh----------hhHHHHHHHHH
Confidence 236788999888 55555555544
No 304
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.16 E-value=1.5e-09 Score=111.67 Aligned_cols=118 Identities=21% Similarity=0.227 Sum_probs=77.9
Q ss_pred cCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc
Q 005713 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (681)
Q Consensus 85 ~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d 164 (681)
......+|+++|.+|+|||||+|+|++......... .+.|.........+++..+++|||||..+
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~---------------~~~T~~~~~~~~~~~g~~i~vIDTPGl~~ 91 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAF---------------QSETLRVREVSGTVDGFKLNIIDTPGLLE 91 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCC---------------CCceEEEEEEEEEECCeEEEEEECCCcCc
Confidence 344678999999999999999999998644221110 02344444455667889999999999987
Q ss_pred hhH---H-------HHHHHh--hcceEEEEeeCCC-CCchhhHHHHHHHHH-cC----CEEEEEEeecCCC
Q 005713 165 FGG---E-------VERILN--MVEGVLLVVDSVE-GPMPQTRFVLKKALE-FG----HAVVVVVNKIDRP 217 (681)
Q Consensus 165 f~~---e-------~~~~l~--~aD~~llVvDa~~-g~~~qt~~~l~~~~~-~g----ip~ivviNKiD~~ 217 (681)
... . +.+++. ..|.+++|..... .........++.+.+ +| .++++|+||+|..
T Consensus 92 ~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 92 SVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred chhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 631 1 222332 3577777754443 334444556665554 34 4699999999986
No 305
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.16 E-value=1.5e-10 Score=118.98 Aligned_cols=87 Identities=21% Similarity=0.358 Sum_probs=68.1
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc-
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD- 164 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d- 164 (681)
....-.|+++|.+++|||||++.|.+.......... +|...-...++|++..|+|+|+||.-.
T Consensus 60 KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~F----------------TTl~~VPG~l~Y~ga~IQild~Pgii~g 123 (365)
T COG1163 60 KSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPF----------------TTLEPVPGMLEYKGAQIQLLDLPGIIEG 123 (365)
T ss_pred ccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCc----------------eecccccceEeecCceEEEEcCcccccC
Confidence 345678999999999999999999876544333332 366666777999999999999998622
Q ss_pred ------hhHHHHHHHhhcceEEEEeeCCCC
Q 005713 165 ------FGGEVERILNMVEGVLLVVDSVEG 188 (681)
Q Consensus 165 ------f~~e~~~~l~~aD~~llVvDa~~g 188 (681)
-+.++....+.||.+++|+|+...
T Consensus 124 as~g~grG~~vlsv~R~ADlIiiVld~~~~ 153 (365)
T COG1163 124 ASSGRGRGRQVLSVARNADLIIIVLDVFED 153 (365)
T ss_pred cccCCCCcceeeeeeccCCEEEEEEecCCC
Confidence 235677889999999999998753
No 306
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.12 E-value=8.6e-10 Score=117.31 Aligned_cols=88 Identities=17% Similarity=0.260 Sum_probs=53.0
Q ss_pred EEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeee---------------eEE-eeCCeEEE
Q 005713 92 IAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKN---------------TSI-TYNDTKIN 155 (681)
Q Consensus 92 V~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~---------------~~~-~~~~~~i~ 155 (681)
|+++|.+++|||||+++|+............ ..+...|+...... ... .+....++
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pft--------T~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~ 72 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFT--------TIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVE 72 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCc--------cccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEE
Confidence 5899999999999999999764321111000 00111121111000 001 12346899
Q ss_pred EEeCCCc----cchhH---HHHHHHhhcceEEEEeeCCC
Q 005713 156 IIDTPGH----SDFGG---EVERILNMVEGVLLVVDSVE 187 (681)
Q Consensus 156 iiDTPGh----~df~~---e~~~~l~~aD~~llVvDa~~ 187 (681)
||||||. ..+.+ .....++.||++++|+|++.
T Consensus 73 l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 73 LIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred EEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 9999997 34444 34456899999999999873
No 307
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=99.11 E-value=4.6e-10 Score=97.40 Aligned_cols=85 Identities=21% Similarity=0.328 Sum_probs=73.8
Q ss_pred CCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEE--ecc
Q 005713 286 DGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI 363 (681)
Q Consensus 286 ~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~gl 363 (681)
+.||++.|.+++...+.|+++.|+|.+|+++.||+|.+.|.+... +|++|..+ ..++++|.|||.|+| .++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~~~~---~V~sI~~~----~~~~~~a~aG~~v~i~l~~i 74 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGVTG---EVKSVEMH----HEPLEEALPGDNVGFNVKNV 74 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCCcEE---EEEEEEEC----CcCcCEECCCCEEEEEECCC
Confidence 569999999999999999999999999999999999999987654 99999644 567899999999999 464
Q ss_pred --cccccCCeeeccCC
Q 005713 364 --DDIQIGETIADKVS 377 (681)
Q Consensus 364 --~~~~~Gdtl~~~~~ 377 (681)
++++.||.||+.++
T Consensus 75 ~~~~v~~G~vl~~~~~ 90 (91)
T cd03693 75 SKKDIKRGDVAGDSKN 90 (91)
T ss_pred CHHHcCCcCEEccCCC
Confidence 46899999998643
No 308
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.10 E-value=1.1e-09 Score=111.16 Aligned_cols=163 Identities=17% Similarity=0.170 Sum_probs=95.0
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEe-eCCeEEEEEeCCCccchhHH-
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT-YNDTKINIIDTPGHSDFGGE- 168 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~-~~~~~i~iiDTPGh~df~~e- 168 (681)
+|+++|..++||||....+..+....... .-|.|+......+. .....++|||+||+.+|...
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~---------------~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~ 65 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTL---------------RLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY 65 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGG---------------G-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhcc---------------ccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc
Confidence 68999999999999999988653321111 11567766666665 34579999999999887654
Q ss_pred ----HHHHHhhcceEEEEeeCCCCCchhhH----HHHHHHHHc--CCEEEEEEeecCCCCCCc-ccchhhHHHHHHHhhc
Q 005713 169 ----VERILNMVEGVLLVVDSVEGPMPQTR----FVLKKALEF--GHAVVVVVNKIDRPSARP-DYVINSTFELFIELNA 237 (681)
Q Consensus 169 ----~~~~l~~aD~~llVvDa~~g~~~qt~----~~l~~~~~~--gip~ivviNKiD~~~~~~-~~~~~ei~~~~~~l~~ 237 (681)
....++.++++|+|+|+......... ..+..+.+. ++.+.|+++|+|+...+. .++..++.+.+.+...
T Consensus 66 ~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~ 145 (232)
T PF04670_consen 66 FNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELE 145 (232)
T ss_dssp HTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999999999843333333 344445444 578999999999875332 2233333332222111
Q ss_pred ccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 238 TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 238 ~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
+...-.+.++.+|-... .+...+-.|+..+-
T Consensus 146 ~~~~~~~~~~~TSI~D~-----------Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 146 DLGIEDITFFLTSIWDE-----------SLYEAWSKIVQKLI 176 (232)
T ss_dssp HTT-TSEEEEEE-TTST-----------HHHHHHHHHHHTTS
T ss_pred hccccceEEEeccCcCc-----------HHHHHHHHHHHHHc
Confidence 11111356777876542 45566666666553
No 309
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=99.09 E-value=5.1e-10 Score=95.42 Aligned_cols=79 Identities=23% Similarity=0.469 Sum_probs=69.6
Q ss_pred ceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEE--eccc-
Q 005713 288 ALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGID- 364 (681)
Q Consensus 288 p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~- 364 (681)
||+++|.++++.+ .|+++.|||.+|++++||+|.+.|.+... +|++|.. +..++++|.|||.|++ .+++
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~~~~---~V~si~~----~~~~~~~a~aGd~v~~~l~~~~~ 72 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSKESV---EVKSIYV----DDEEVDYAVAGENVRLKLKGIDE 72 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCCcEE---EEEEEEE----CCeECCEECCCCEEEEEECCCCH
Confidence 7999999999988 99999999999999999999999998654 9999954 4578999999999997 5654
Q ss_pred -ccccCCeeec
Q 005713 365 -DIQIGETIAD 374 (681)
Q Consensus 365 -~~~~Gdtl~~ 374 (681)
++.+||+|++
T Consensus 73 ~~v~~G~vl~~ 83 (83)
T cd03698 73 EDISPGDVLCS 83 (83)
T ss_pred HHCCCCCEEeC
Confidence 7899999974
No 310
>PRK13768 GTPase; Provisional
Probab=99.09 E-value=5.6e-10 Score=115.46 Aligned_cols=119 Identities=20% Similarity=0.305 Sum_probs=76.1
Q ss_pred eEEEEEeCCCccch---hHHHHHHHhh-----cceEEEEeeCCCCCchhhHHHHHHHH-----HcCCEEEEEEeecCCCC
Q 005713 152 TKINIIDTPGHSDF---GGEVERILNM-----VEGVLLVVDSVEGPMPQTRFVLKKAL-----EFGHAVVVVVNKIDRPS 218 (681)
Q Consensus 152 ~~i~iiDTPGh~df---~~e~~~~l~~-----aD~~llVvDa~~g~~~qt~~~l~~~~-----~~gip~ivviNKiD~~~ 218 (681)
..+.||||||+.++ .......++. ++++++|+|+..+....+......+. ..++|+++|+||+|+..
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLS 176 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcC
Confidence 47899999998663 3333333332 88999999998877666544333322 56899999999999875
Q ss_pred CC-cccchhhHHH---HHHHhhc--------------c--cccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 219 AR-PDYVINSTFE---LFIELNA--------------T--DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 219 ~~-~~~~~~ei~~---~~~~l~~--------------~--~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.. .+.....+.+ ++.++.. . .-....+++++||+++. |+++|++.|.+++
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~----------gl~~L~~~I~~~l 246 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGE----------GFDELYAAIQEVF 246 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCc----------CHHHHHHHHHHHc
Confidence 42 1111111110 1111100 0 00123579999999998 9999999999988
Q ss_pred CC
Q 005713 279 PG 280 (681)
Q Consensus 279 p~ 280 (681)
+.
T Consensus 247 ~~ 248 (253)
T PRK13768 247 CG 248 (253)
T ss_pred CC
Confidence 65
No 311
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=5.2e-10 Score=108.70 Aligned_cols=120 Identities=22% Similarity=0.329 Sum_probs=85.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
..+.|.++|..|+|||+|.-+|...... .++ .++......+.+++..+.|||.|||.+...
T Consensus 37 ~~~~Vll~Gl~dSGKT~LF~qL~~gs~~----~Tv---------------tSiepn~a~~r~gs~~~~LVD~PGH~rlR~ 97 (238)
T KOG0090|consen 37 KQNAVLLVGLSDSGKTSLFTQLITGSHR----GTV---------------TSIEPNEATYRLGSENVTLVDLPGHSRLRR 97 (238)
T ss_pred cCCcEEEEecCCCCceeeeeehhcCCcc----Cee---------------eeeccceeeEeecCcceEEEeCCCcHHHHH
Confidence 3467999999999999999999876322 111 244445555666677789999999999988
Q ss_pred HHHHHHh---hcceEEEEeeCCCC---CchhhHHHHHHHH-----HcCCEEEEEEeecCCCCCCcccchh
Q 005713 168 EVERILN---MVEGVLLVVDSVEG---PMPQTRFVLKKAL-----EFGHAVVVVVNKIDRPSARPDYVIN 226 (681)
Q Consensus 168 e~~~~l~---~aD~~llVvDa~~g---~~~qt~~~l~~~~-----~~gip~ivviNKiD~~~~~~~~~~~ 226 (681)
....++. .+-++|+|||+..- +..-...+...+. ..+.|++++.||.|+..|...+.+.
T Consensus 98 kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir 167 (238)
T KOG0090|consen 98 KLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIR 167 (238)
T ss_pred HHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHH
Confidence 8888887 78999999997652 1122222222222 3467899999999999887655443
No 312
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.04 E-value=1.9e-09 Score=108.11 Aligned_cols=170 Identities=16% Similarity=0.160 Sum_probs=97.6
Q ss_pred cCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeee---eeccchhhcccceeE---Eeeee-------------
Q 005713 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKER---IMDSNDLERERGITI---LSKNT------------- 145 (681)
Q Consensus 85 ~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~---~~D~~~~E~erGiTi---~~~~~------------- 145 (681)
....+++|+++|+.|+|||||+++|+..........-..+. -.|....++ .|..+ .....
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~-~~~~~~~l~~gcic~~~~~~~~~~l~ 96 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRK-YGAPAIQINTGKECHLDAHMVAHALE 96 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHH-cCCcEEEEcCCCcccCChHHHHHHHH
Confidence 34579999999999999999999999864321111111111 123333322 22211 11100
Q ss_pred EEeeCCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccch
Q 005713 146 SITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVI 225 (681)
Q Consensus 146 ~~~~~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~ 225 (681)
.....+..+.|++|.|...... ......+..+.|+|+.++..... ......+.+.++++||+|+.+.... ..
T Consensus 97 ~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~~----~~~~~~~~a~iiv~NK~Dl~~~~~~-~~ 168 (207)
T TIGR00073 97 DLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKPL----KYPGMFKEADLIVINKADLAEAVGF-DV 168 (207)
T ss_pred HhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchhh----hhHhHHhhCCEEEEEHHHccccchh-hH
Confidence 0111245788999999311111 11123455678899876543222 2223346788999999999753211 12
Q ss_pred hhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 226 NSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 226 ~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.++.+.+.++. ...|++++||++|. |+..+++.+.++.
T Consensus 169 ~~~~~~l~~~~-----~~~~i~~~Sa~~g~----------gv~~l~~~i~~~~ 206 (207)
T TIGR00073 169 EKMKADAKKIN-----PEAEIILMSLKTGE----------GLDEWLEFLEGQV 206 (207)
T ss_pred HHHHHHHHHhC-----CCCCEEEEECCCCC----------CHHHHHHHHHHhh
Confidence 33334343332 13589999999999 9999999987653
No 313
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.03 E-value=1.9e-09 Score=115.12 Aligned_cols=175 Identities=16% Similarity=0.213 Sum_probs=105.3
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccc-cceeeeeeccchhhcccc---eeEEeee---eEEee--C---CeEE
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN-QTVKERIMDSNDLERERG---ITILSKN---TSITY--N---DTKI 154 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~-~~~~~~~~D~~~~E~erG---iTi~~~~---~~~~~--~---~~~i 154 (681)
..-..|+++|++++|||||+++|..+.....-. .....+..|-.+... .| +|...+. -.++. . ..++
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~-~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSA-AGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCC-CCCCcccCCCccccCcceEEeccCCCcccE
Confidence 345679999999999999999999873322111 111122223222222 25 3333333 22222 1 2689
Q ss_pred EEEeCCCccchh-------HH----------------------HHHHHh-hcceEEEEe-eCC------CCCchhhHHHH
Q 005713 155 NIIDTPGHSDFG-------GE----------------------VERILN-MVEGVLLVV-DSV------EGPMPQTRFVL 197 (681)
Q Consensus 155 ~iiDTPGh~df~-------~e----------------------~~~~l~-~aD~~llVv-Da~------~g~~~qt~~~l 197 (681)
.++||+|+.+-+ .. +...+. .+|.+|+|. |++ ++......+++
T Consensus 94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i 173 (492)
T TIGR02836 94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI 173 (492)
T ss_pred EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence 999999974421 11 445666 899999999 876 56667788899
Q ss_pred HHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 198 KKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 198 ~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
..+++.++|+++++||.|-.........+++.+ ..++|++++|+.+-. ...+..+|+.++-.
T Consensus 174 ~eLk~~~kPfiivlN~~dp~~~et~~l~~~l~e----------ky~vpvl~v~c~~l~--------~~DI~~il~~vL~E 235 (492)
T TIGR02836 174 EELKELNKPFIILLNSTHPYHPETEALRQELEE----------KYDVPVLAMDVESMR--------ESDILSVLEEVLYE 235 (492)
T ss_pred HHHHhcCCCEEEEEECcCCCCchhHHHHHHHHH----------HhCCceEEEEHHHcC--------HHHHHHHHHHHHhc
Confidence 999999999999999999432211111112211 124577777776433 12455566666655
Q ss_pred CCC
Q 005713 278 IPG 280 (681)
Q Consensus 278 lp~ 280 (681)
+|-
T Consensus 236 FPv 238 (492)
T TIGR02836 236 FPI 238 (492)
T ss_pred CCc
Confidence 553
No 314
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=99.03 E-value=2.4e-10 Score=95.09 Aligned_cols=71 Identities=34% Similarity=0.611 Sum_probs=63.2
Q ss_pred ceEEEEEeecccccCCCEEEEcc--CCCceeeeEEEeEEEeeccceeecceecCCCEEEEecccc-cccCCeee
Q 005713 303 GRIAIGRLHAGVLRKGMEVRVCT--SEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDD-IQIGETIA 373 (681)
Q Consensus 303 G~v~~grV~sG~lk~gd~v~~~~--~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~-~~~Gdtl~ 373 (681)
|++++|||++|+|++||+|.+.+ ++++....+|++|+.+++....++..+.||+++++.++++ +++|||||
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLPNGTGKKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEESTTTTEECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECccCCcceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 78999999999999999999966 3333234699999999999999999999999999999999 89999996
No 315
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.02 E-value=7.3e-10 Score=98.65 Aligned_cols=138 Identities=21% Similarity=0.265 Sum_probs=94.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCc----cch
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH----SDF 165 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh----~df 165 (681)
.+++++|.+|+|||||+++|.+......+ .-.++|++. ..|||||- ..+
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykK-------------------------TQAve~~d~--~~IDTPGEy~~~~~~ 54 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKK-------------------------TQAVEFNDK--GDIDTPGEYFEHPRW 54 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcc-------------------------cceeeccCc--cccCCchhhhhhhHH
Confidence 57999999999999999999765433222 222445432 25999994 444
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCce
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~p 245 (681)
-......+..+|.+++|-.+.++... +--..+.-...|+|-|++|.|+.+ +.-+...+..+.+.++. |
T Consensus 55 Y~aL~tt~~dadvi~~v~~and~~s~---f~p~f~~~~~k~vIgvVTK~DLae---d~dI~~~~~~L~eaGa~------~ 122 (148)
T COG4917 55 YHALITTLQDADVIIYVHAANDPESR---FPPGFLDIGVKKVIGVVTKADLAE---DADISLVKRWLREAGAE------P 122 (148)
T ss_pred HHHHHHHhhccceeeeeecccCcccc---CCcccccccccceEEEEecccccc---hHhHHHHHHHHHHcCCc------c
Confidence 44445556778999999998875321 111222233467999999999984 22355566777777754 6
Q ss_pred EEEeecccCCCCCCCCCCCCCcchhHHHHHh
Q 005713 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (681)
Q Consensus 246 vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~ 276 (681)
+|.+|+.+.. |+++|++.+..
T Consensus 123 IF~~s~~d~~----------gv~~l~~~L~~ 143 (148)
T COG4917 123 IFETSAVDNQ----------GVEELVDYLAS 143 (148)
T ss_pred eEEEeccCcc----------cHHHHHHHHHh
Confidence 9999999888 88888887754
No 316
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=9.4e-09 Score=111.35 Aligned_cols=143 Identities=19% Similarity=0.204 Sum_probs=100.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
..+-|||+|++|+|||||+..|+..-... .-.+...-||+ +..+..+|+|+.||.. ..
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~-------------ti~~i~GPiTv------vsgK~RRiTflEcp~D---l~ 125 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQ-------------TIDEIRGPITV------VSGKTRRITFLECPSD---LH 125 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHh-------------hhhccCCceEE------eecceeEEEEEeChHH---HH
Confidence 45667899999999999999998642210 00111123444 4557789999999933 45
Q ss_pred HHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCE-EEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceE
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQA 246 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip-~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pv 246 (681)
.+..+.+.||.+||+||+.-|+...|.++|..+..+|.| ++-|++.+|+... ...+..++..++.-...+-.....+
T Consensus 126 ~miDvaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~--~stLr~~KKrlkhRfWtEiyqGaKl 203 (1077)
T COG5192 126 QMIDVAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKN--PSTLRSIKKRLKHRFWTEIYQGAKL 203 (1077)
T ss_pred HHHhHHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccC--hHHHHHHHHHHhhhHHHHHcCCceE
Confidence 667788999999999999999999999999999999998 5568999998643 2344555544432222222223468
Q ss_pred EEeecccC
Q 005713 247 IYASGIQG 254 (681)
Q Consensus 247 i~~SA~~G 254 (681)
||.|...+
T Consensus 204 FylsgV~n 211 (1077)
T COG5192 204 FYLSGVEN 211 (1077)
T ss_pred EEeccccc
Confidence 89887644
No 317
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.97 E-value=3.9e-09 Score=113.35 Aligned_cols=172 Identities=15% Similarity=0.153 Sum_probs=94.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeE-EeeeeEEeeCC-eEEEEEeCCCccch
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITI-LSKNTSITYND-TKINIIDTPGHSDF 165 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi-~~~~~~~~~~~-~~i~iiDTPGh~df 165 (681)
...||||+|.+|+|||||||+|.+-.........+ |.+- ......+.+.. -.+.+||.||...-
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~t--------------Gv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~ 99 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPT--------------GVVETTMEPTPYPHPKFPNVTLWDLPGIGTP 99 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--S--------------SSHSCCTS-EEEE-SS-TTEEEEEE--GGGS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCC--------------CCCcCCCCCeeCCCCCCCCCeEEeCCCCCCC
Confidence 45799999999999999999996532211111111 2210 11222233333 36899999997443
Q ss_pred hHHHHHHH-----hhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCC----------CCCcccchhhHHH
Q 005713 166 GGEVERIL-----NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP----------SARPDYVINSTFE 230 (681)
Q Consensus 166 ~~e~~~~l-----~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~----------~~~~~~~~~ei~~ 230 (681)
......++ ...|.+|++.+. .+......+++.+...|+|+++|-+|+|.. ..+.+++++++++
T Consensus 100 ~f~~~~Yl~~~~~~~yD~fiii~s~--rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~ 177 (376)
T PF05049_consen 100 NFPPEEYLKEVKFYRYDFFIIISSE--RFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRE 177 (376)
T ss_dssp S--HHHHHHHTTGGG-SEEEEEESS--S--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHH
T ss_pred CCCHHHHHHHccccccCEEEEEeCC--CCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHH
Confidence 33444444 446777766553 455677788899999999999999999951 1122455666665
Q ss_pred HHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCcc
Q 005713 231 LFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI 283 (681)
Q Consensus 231 ~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~ 283 (681)
...+.-........+||.+|...-. ..+...|.+++.+.+|..++
T Consensus 178 ~c~~~L~k~gv~~P~VFLVS~~dl~--------~yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 178 NCLENLQKAGVSEPQVFLVSSFDLS--------KYDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp HHHHHHHCTT-SS--EEEB-TTTTT--------STTHHHHHHHHHHHS-GGGH
T ss_pred HHHHHHHHcCCCcCceEEEeCCCcc--------cCChHHHHHHHHHHhHHHHH
Confidence 5433222223345679999987432 23677888999999987654
No 318
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.96 E-value=1.1e-08 Score=112.25 Aligned_cols=81 Identities=19% Similarity=0.189 Sum_probs=53.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEE----------------------
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSI---------------------- 147 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~---------------------- 147 (681)
.+|+|+|.+++|||||+++|+.......... +.|+......+
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~----------------f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~ 65 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYP----------------FTTIDPNVGVAYVRVECPCKELGVKCNPRNGKC 65 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCC----------------CcceeeeeeeeeeccCCchhhhhhhhccccccc
Confidence 4799999999999999999987644321111 11111111100
Q ss_pred --eeCCeEEEEEeCCCcc----ch---hHHHHHHHhhcceEEEEeeCC
Q 005713 148 --TYNDTKINIIDTPGHS----DF---GGEVERILNMVEGVLLVVDSV 186 (681)
Q Consensus 148 --~~~~~~i~iiDTPGh~----df---~~e~~~~l~~aD~~llVvDa~ 186 (681)
.+....++||||||.. .+ .....+.++.||++++|||+.
T Consensus 66 ~~~~~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 66 IDGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCcceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 0223578999999953 22 234555689999999999997
No 319
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.96 E-value=8.7e-09 Score=109.37 Aligned_cols=177 Identities=19% Similarity=0.197 Sum_probs=95.9
Q ss_pred cCCCccEEEEEeCCCCcHHHHHHHHHhhcCcccc--------ccc-ee-eeee-ccchhh---cccceeEEeeee-----
Q 005713 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRD--------NQT-VK-ERIM-DSNDLE---RERGITILSKNT----- 145 (681)
Q Consensus 85 ~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~--------~~~-~~-~~~~-D~~~~E---~erGiTi~~~~~----- 145 (681)
.......|+|+|.+|+|||||+..|......... ... .. ..++ |..... ...+.-+.....
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLG 109 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCcccccc
Confidence 3445788999999999999999998764211000 000 00 0000 100000 001111111111
Q ss_pred -----------EEeeCCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeec
Q 005713 146 -----------SITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKI 214 (681)
Q Consensus 146 -----------~~~~~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKi 214 (681)
.+...++.+.|+||||...- ....+..+|.++++.+...+. ........ -.++|.++|+||+
T Consensus 110 ~~~~~~~~~~~~l~~~g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~~~---el~~~~~~-l~~~~~ivv~NK~ 182 (300)
T TIGR00750 110 GLSQATRELILLLDAAGYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGTGD---DLQGIKAG-LMEIADIYVVNKA 182 (300)
T ss_pred chhHHHHHHHHHHHhCCCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCccH---HHHHHHHH-HhhhccEEEEEcc
Confidence 01234789999999996422 234678899999886544321 11111111 1367889999999
Q ss_pred CCCCCCcccc-hhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 215 DRPSARPDYV-INSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 215 D~~~~~~~~~-~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
|+..+..... ...+...+..+......+..|++++||++|. |+.+|++.|.+++
T Consensus 183 Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~----------Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 183 DGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGR----------GIDELWDAIEEHK 237 (300)
T ss_pred cccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCC----------CHHHHHHHHHHHH
Confidence 9875431111 1111111112211111234579999999999 8999999888764
No 320
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.95 E-value=3.9e-09 Score=106.85 Aligned_cols=171 Identities=26% Similarity=0.310 Sum_probs=99.8
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccc--------ccc---ceeeeeecc---chhhcccceeEEeeeeEE-----
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFR--------DNQ---TVKERIMDS---NDLERERGITILSKNTSI----- 147 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~--------~~~---~~~~~~~D~---~~~E~erGiTi~~~~~~~----- 147 (681)
.+...|+|.|++|+|||||+++|....-... ++. +...-.-|. .......++-|-+....=
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 3567899999999999999999986421100 000 000111111 122233344443332221
Q ss_pred -----------eeCCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHH--HHHHHHHcCCEEEEEEeec
Q 005713 148 -----------TYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRF--VLKKALEFGHAVVVVVNKI 214 (681)
Q Consensus 148 -----------~~~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~--~l~~~~~~gip~ivviNKi 214 (681)
+.-++.+.||.|-|--.- -.....++|.+++|+-...|..-|... .++. .=|+|+||.
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQs---E~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------aDi~vVNKa 177 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQS---EVDIADMADTVVLVLVPGLGDEIQAIKAGIMEI------ADIFVVNKA 177 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTH---HHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------SEEEEE--
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCcc---HHHHHHhcCeEEEEecCCCccHHHHHhhhhhhh------ccEEEEeCC
Confidence 124678999999985322 223678999999999987776655432 2333 459999999
Q ss_pred CCCCCCcccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 215 DRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 215 D~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
|+..+ +....+++..+.-.......+..|++.+||.+|. |+.+|++.|.++.
T Consensus 178 D~~gA--~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~----------Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 178 DRPGA--DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGE----------GIDELWEAIDEHR 229 (266)
T ss_dssp SHHHH--HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTB----------SHHHHHHHHHHHH
T ss_pred ChHHH--HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCC----------CHHHHHHHHHHHH
Confidence 97654 3555666655533222234456799999999998 9999999988764
No 321
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.95 E-value=9e-10 Score=107.65 Aligned_cols=161 Identities=17% Similarity=0.155 Sum_probs=107.6
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEE-eeCCeEEEEEeCCCccchhH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSI-TYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~-~~~~~~i~iiDTPGh~df~~ 167 (681)
..+++|+|...+|||+|+-.+....+......++-+.+ +....+ ..+.+.+.+|||+|++||..
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny---------------s~~v~V~dg~~v~L~LwDTAGqedYDr 68 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY---------------SANVTVDDGKPVELGLWDTAGQEDYDR 68 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc---------------eEEEEecCCCEEEEeeeecCCCccccc
Confidence 47899999999999999988877655444444332111 122233 24456789999999999987
Q ss_pred HHHHHHhhcceEEEEeeCCCCCc--hhhHHHHHHHHHc--CCEEEEEEeecCCCCCC-c----------ccchhhHHHHH
Q 005713 168 EVERILNMVEGVLLVVDSVEGPM--PQTRFVLKKALEF--GHAVVVVVNKIDRPSAR-P----------DYVINSTFELF 232 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~--~qt~~~l~~~~~~--gip~ivviNKiD~~~~~-~----------~~~~~ei~~~~ 232 (681)
...-.+..+|.+|++++..+... .-...|+-....+ +.|+|+|++|.|+.+.. . .-..++...+.
T Consensus 69 lRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA 148 (198)
T KOG0393|consen 69 LRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELA 148 (198)
T ss_pred ccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHH
Confidence 55567888999999888665322 2233445555554 69999999999987321 0 01112223334
Q ss_pred HHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 233 IELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 233 ~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
+++++ ..++++||++.. |+.+.|+..+.+.-.
T Consensus 149 ~~iga------~~y~EcSa~tq~----------~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 149 KEIGA------VKYLECSALTQK----------GVKEVFDEAIRAALR 180 (198)
T ss_pred HHhCc------ceeeeehhhhhC----------CcHHHHHHHHHHHhc
Confidence 44444 358999999998 888888887766533
No 322
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.95 E-value=7.6e-09 Score=105.55 Aligned_cols=132 Identities=15% Similarity=0.225 Sum_probs=84.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCcccccccee---------------ee--------eeccchhh----c--c---
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK---------------ER--------IMDSNDLE----R--E--- 135 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~---------------~~--------~~D~~~~E----~--e--- 135 (681)
..+.|+++|+.++|||||+++|.+........+.+. .. +.|..+.. . +
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 567899999999999999999997642111110000 00 11111111 0 0
Q ss_pred -cceeEEeeeeEEe--eCC-eEEEEEeCCCccch-------------hHHHHHHHh-hcceEEEEeeCCCCCchhh-HHH
Q 005713 136 -RGITILSKNTSIT--YND-TKINIIDTPGHSDF-------------GGEVERILN-MVEGVLLVVDSVEGPMPQT-RFV 196 (681)
Q Consensus 136 -rGiTi~~~~~~~~--~~~-~~i~iiDTPGh~df-------------~~e~~~~l~-~aD~~llVvDa~~g~~~qt-~~~ 196 (681)
.+-.+......++ ..+ ..++|+||||..+. ...+..+++ ..+.+|+|+|+..++..+. .+.
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 0112222222332 222 57999999998532 133455666 3468999999999888877 577
Q ss_pred HHHHHHcCCEEEEEEeecCCCCC
Q 005713 197 LKKALEFGHAVVVVVNKIDRPSA 219 (681)
Q Consensus 197 l~~~~~~gip~ivviNKiD~~~~ 219 (681)
.+.+...+.|.++|+||+|..+.
T Consensus 185 a~~ld~~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 185 AKEVDPQGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHcCCcEEEEEECCCCCCc
Confidence 88888889999999999998754
No 323
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=2.2e-09 Score=97.68 Aligned_cols=157 Identities=20% Similarity=0.197 Sum_probs=108.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
.-.++.++|--|+||||..-++--..+.... -|+......+.+++.++++||..|+.....
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttk-------------------Ptigfnve~v~yKNLk~~vwdLggqtSirP 77 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTK-------------------PTIGFNVETVPYKNLKFQVWDLGGQTSIRP 77 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccC-------------------CCCCcCccccccccccceeeEccCcccccH
Confidence 4467899999999999987776433222211 244455666788999999999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCCc--hhhHHHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccc-cc
Q 005713 168 EVERILNMVEGVLLVVDSVEGPM--PQTRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD-EQ 241 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~--~qt~~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~-~~ 241 (681)
-+..++...|.+|+|||+++-.. ..-.++...+.+ .+..++|+.||+|...+- ...++.. .++... ..
T Consensus 78 yWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~---t~~E~~~---~L~l~~Lk~ 151 (182)
T KOG0072|consen 78 YWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL---TRSEVLK---MLGLQKLKD 151 (182)
T ss_pred HHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh---hHHHHHH---HhChHHHhh
Confidence 99999999999999999887322 222233333332 246789999999976542 1222222 111110 01
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
..+.+|..||.+|. |+++.+|++.+-+.
T Consensus 152 r~~~Iv~tSA~kg~----------Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 152 RIWQIVKTSAVKGE----------GLDPAMDWLQRPLK 179 (182)
T ss_pred heeEEEeecccccc----------CCcHHHHHHHHHHh
Confidence 13679999999999 99999999987654
No 324
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.92 E-value=1.1e-08 Score=106.36 Aligned_cols=160 Identities=17% Similarity=0.237 Sum_probs=103.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEee-CCeEEEEEeCCCccc---
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY-NDTKINIIDTPGHSD--- 164 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~i~iiDTPGh~d--- 164 (681)
+-.|+++|-+++|||||++.+......+..... +|+......+.. .+..+.+-|.||.-.
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~AkPKIadYpF----------------TTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs 222 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAKPKIADYPF----------------TTLVPNLGVVRVDGGESFVVADIPGLIEGAS 222 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcCCcccCCcc----------------ccccCcccEEEecCCCcEEEecCcccccccc
Confidence 456899999999999999999876655544433 355555555554 456799999999621
Q ss_pred ----hhHHHHHHHhhcceEEEEeeCCCC----CchhhHHHHHHHHHc-----CCEEEEEEeecCCCCCCcccchhhHHHH
Q 005713 165 ----FGGEVERILNMVEGVLLVVDSVEG----PMPQTRFVLKKALEF-----GHAVVVVVNKIDRPSARPDYVINSTFEL 231 (681)
Q Consensus 165 ----f~~e~~~~l~~aD~~llVvDa~~g----~~~qt~~~l~~~~~~-----gip~ivviNKiD~~~~~~~~~~~ei~~~ 231 (681)
......+.+..+-..+.|||.+.. +...-..+...+.++ +.|.+||+||+|+..++ +..+++.+.
T Consensus 223 ~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~--e~~~~~~~~ 300 (369)
T COG0536 223 EGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE--EELEELKKA 300 (369)
T ss_pred cCCCccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH--HHHHHHHHH
Confidence 223345566778899999997753 233334444555544 57999999999965442 223333333
Q ss_pred HHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 232 FIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 232 ~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
+.+... . .+.+|+||.+++ |+++|+..+.+.+...
T Consensus 301 l~~~~~----~-~~~~~ISa~t~~----------g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 301 LAEALG----W-EVFYLISALTRE----------GLDELLRALAELLEET 335 (369)
T ss_pred HHHhcC----C-Ccceeeehhccc----------CHHHHHHHHHHHHHHh
Confidence 222111 1 122339999999 8898888887766443
No 325
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=98.92 E-value=6.7e-09 Score=88.29 Aligned_cols=78 Identities=19% Similarity=0.405 Sum_probs=66.4
Q ss_pred ceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEe--cc--
Q 005713 288 ALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC--GI-- 363 (681)
Q Consensus 288 p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~--gl-- 363 (681)
||++.|.+++... |+++.|||.+|++++||+|.+.|.+... +|++|.. ++.++++|.|||.|++. ++
T Consensus 1 plr~~I~~v~~~~--g~vv~G~v~~G~i~~G~~v~i~P~~~~~---~V~si~~----~~~~~~~a~aGd~v~l~l~~i~~ 71 (82)
T cd04089 1 PLRLPIIDKYKDM--GTVVLGKVESGTIKKGDKLLVMPNKTQV---EVLSIYN----EDVEVRYARPGENVRLRLKGIEE 71 (82)
T ss_pred CeEEEEEeEEEcC--CEEEEEEEeeeEEecCCEEEEeCCCcEE---EEEEEEE----CCEECCEECCCCEEEEEecCCCH
Confidence 7899999999754 8999999999999999999999998654 8999954 35789999999999994 44
Q ss_pred cccccCCeeec
Q 005713 364 DDIQIGETIAD 374 (681)
Q Consensus 364 ~~~~~Gdtl~~ 374 (681)
+++..||.|++
T Consensus 72 ~~v~~G~vl~~ 82 (82)
T cd04089 72 EDISPGFVLCS 82 (82)
T ss_pred HHCCCCCEEeC
Confidence 36888999874
No 326
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.91 E-value=1.5e-09 Score=108.94 Aligned_cols=183 Identities=20% Similarity=0.281 Sum_probs=109.0
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCcccccccee-----------------------eeeeccchhhcccceeEEe
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK-----------------------ERIMDSNDLERERGITILS 142 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~-----------------------~~~~D~~~~E~erGiTi~~ 142 (681)
.++...|.++|-.|+||||++.+|.........+.-+- ..+|....+-...||+...
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 34566789999999999999999986544322111100 1234445566667776554
Q ss_pred eeeEEee-----------CCeEEEEEeCCCccc-hh-----HHHHHHH-hh-cceEEEEeeCCCCCchhh-----HHHHH
Q 005713 143 KNTSITY-----------NDTKINIIDTPGHSD-FG-----GEVERIL-NM-VEGVLLVVDSVEGPMPQT-----RFVLK 198 (681)
Q Consensus 143 ~~~~~~~-----------~~~~i~iiDTPGh~d-f~-----~e~~~~l-~~-aD~~llVvDa~~g~~~qt-----~~~l~ 198 (681)
..+...+ ...++.||||||+-. |. ......+ .. .-.+++|+|......+.| .....
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 4433332 235789999999844 21 1111122 22 246889999766444433 33445
Q ss_pred HHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHH-hh-----------------cccccCCceEEEeecccCCCCCCC
Q 005713 199 KALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIE-LN-----------------ATDEQCDFQAIYASGIQGKAGLSP 260 (681)
Q Consensus 199 ~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~-l~-----------------~~~~~~~~pvi~~SA~~G~~~~~~ 260 (681)
.+.+..+|+|+|.||+|..+..+..-.-+-.+.|.+ +. ..+......++.+|+.+|.
T Consensus 176 ilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~----- 250 (366)
T KOG1532|consen 176 ILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGE----- 250 (366)
T ss_pred HHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCC-----
Confidence 556678999999999999876542211111111111 11 0111224568999999999
Q ss_pred CCCCCCcchhHHHHHhhC
Q 005713 261 DNLADDLGPLFESIMRCI 278 (681)
Q Consensus 261 ~~~~~gi~~Ll~~I~~~l 278 (681)
|+..+|.++...+
T Consensus 251 -----G~ddf~~av~~~v 263 (366)
T KOG1532|consen 251 -----GFDDFFTAVDESV 263 (366)
T ss_pred -----cHHHHHHHHHHHH
Confidence 8888888887654
No 327
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=98.88 E-value=1.1e-08 Score=86.73 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=67.5
Q ss_pred eEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEe--ccccc
Q 005713 289 LQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC--GIDDI 366 (681)
Q Consensus 289 ~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~--gl~~~ 366 (681)
|++.|.++++....|+.+.|||.+|++++||+|.+.|.+... +|++|..+ ..++++|.|||.|+|. +-+++
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~~~~---~V~si~~~----~~~~~~a~aGd~v~l~l~~~~~i 73 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSGKTS---RVKSIETF----DGELDEAGAGESVTLTLEDEIDV 73 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCCCeE---EEEEEEEC----CcEeCEEcCCCEEEEEECCcccc
Confidence 678999999877778889999999999999999999988654 99999643 5678999999999993 45578
Q ss_pred ccCCeeec
Q 005713 367 QIGETIAD 374 (681)
Q Consensus 367 ~~Gdtl~~ 374 (681)
.+||.||.
T Consensus 74 ~~G~vl~~ 81 (81)
T cd03695 74 SRGDVIVA 81 (81)
T ss_pred CCCCEEeC
Confidence 99999873
No 328
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.87 E-value=2.6e-08 Score=102.16 Aligned_cols=207 Identities=17% Similarity=0.150 Sum_probs=118.2
Q ss_pred cchhHHHHHHhhcccCCCchhh-hHHHHhhhccCCCccEEEEEeCCCCcHHHHHHHHHhhcCcccc--------cc---c
Q 005713 54 HCNTATQRHRRIQCSVSPPAET-AAEKKSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRD--------NQ---T 121 (681)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~--------~~---~ 121 (681)
+...+.+....+++........ ...........-+...|+|.|.+|+|||||++.|......-.. +. +
T Consensus 15 drrAlARaITlvEs~~~~h~~~a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~T 94 (323)
T COG1703 15 DRRALARAITLVESRRPDHRALARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFT 94 (323)
T ss_pred CHHHHHHHHHHHhcCCchhhhHHHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCC
Confidence 4455555555554333221111 1222223333445668999999999999999999764311000 00 0
Q ss_pred eeeeeeccch---hhcccceeEEeeeeE----------------EeeCCeEEEEEeCCCccchhHHHHHHHhhcceEEEE
Q 005713 122 VKERIMDSND---LERERGITILSKNTS----------------ITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLV 182 (681)
Q Consensus 122 ~~~~~~D~~~---~E~erGiTi~~~~~~----------------~~~~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llV 182 (681)
...-.-|... .-...|+-+-+.... ++--++.+.||.|-|-..-. -.+..++|.+++|
T Consensus 95 GGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v 171 (323)
T COG1703 95 GGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVV 171 (323)
T ss_pred CccccccHhhHHhhccCCCeEEeecCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEE
Confidence 0011111111 111112222221111 11135689999999863322 2367899999999
Q ss_pred eeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhh--cccccCCceEEEeecccCCCCCCC
Q 005713 183 VDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN--ATDEQCDFQAIYASGIQGKAGLSP 260 (681)
Q Consensus 183 vDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~--~~~~~~~~pvi~~SA~~G~~~~~~ 260 (681)
.=+.-|..-|.... --+.+-=|+|+||.|+.+++ ....+++..+.... .....+..|++-+||.+|.
T Consensus 172 ~~pg~GD~~Q~iK~----GimEiaDi~vINKaD~~~A~--~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~----- 240 (323)
T COG1703 172 MIPGAGDDLQGIKA----GIMEIADIIVINKADRKGAE--KAARELRSALDLLREVWRENGWRPPVVTTSALEGE----- 240 (323)
T ss_pred ecCCCCcHHHHHHh----hhhhhhheeeEeccChhhHH--HHHHHHHHHHHhhcccccccCCCCceeEeeeccCC-----
Confidence 88777766665431 11123359999999976653 44455555444332 3445677899999999999
Q ss_pred CCCCCCcchhHHHHHhhCC
Q 005713 261 DNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 261 ~~~~~gi~~Ll~~I~~~lp 279 (681)
|+.+|+++|.++..
T Consensus 241 -----Gi~~L~~ai~~h~~ 254 (323)
T COG1703 241 -----GIDELWDAIEDHRK 254 (323)
T ss_pred -----CHHHHHHHHHHHHH
Confidence 99999999988763
No 329
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=1.3e-08 Score=94.97 Aligned_cols=116 Identities=17% Similarity=0.237 Sum_probs=86.5
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
.++.-++.++|--|+|||||++.|-...-. ... -|.......+...+.+++-+|..||..-
T Consensus 17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl~-qhv------------------PTlHPTSE~l~Ig~m~ftt~DLGGH~qA 77 (193)
T KOG0077|consen 17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRLG-QHV------------------PTLHPTSEELSIGGMTFTTFDLGGHLQA 77 (193)
T ss_pred hccCceEEEEeecCCchhhHHHHHcccccc-ccC------------------CCcCCChHHheecCceEEEEccccHHHH
Confidence 345678999999999999999988543221 111 1223333345668899999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCC-CCchhhHHHHHHHHH----cCCEEEEEEeecCCCCCC
Q 005713 166 GGEVERILNMVEGVLLVVDSVE-GPMPQTRFVLKKALE----FGHAVVVVVNKIDRPSAR 220 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~-g~~~qt~~~l~~~~~----~gip~ivviNKiD~~~~~ 220 (681)
..-+..++..+|+++++||+.+ ..+...+..+..+.. ..+|+++..||+|.+.+-
T Consensus 78 rr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 78 RRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred HHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 9999999999999999999887 333444444444433 479999999999998765
No 330
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=98.85 E-value=2e-08 Score=86.43 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=68.4
Q ss_pred eEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCC-CceeeeEEEeEEEeeccceeecceecCCCEEEE--ecc--
Q 005713 289 LQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSE-DSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI-- 363 (681)
Q Consensus 289 ~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~-~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~gl-- 363 (681)
|.+.|.+++..+..|+++.|||.+|++++||.+.+.|.+ ++....+|++|.. ++.++++|.|||.+++ .++
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g~~~~~~V~sI~~----~~~~~~~a~aGd~v~l~l~~i~~ 76 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDGSFRPVTVKSIHR----NRSPVRVVRAGQSASLALKKIDR 76 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCCCEeEEEEEEEEE----CCeECCEECCCCEEEEEEcCCCH
Confidence 578899999999999999999999999999999999985 3323469999953 4678999999999999 344
Q ss_pred cccccCCeeec
Q 005713 364 DDIQIGETIAD 374 (681)
Q Consensus 364 ~~~~~Gdtl~~ 374 (681)
+++..|+.||+
T Consensus 77 ~~i~~G~vl~~ 87 (87)
T cd03694 77 SLLRKGMVLVS 87 (87)
T ss_pred HHcCCccEEeC
Confidence 36888998874
No 331
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.85 E-value=6.8e-08 Score=101.27 Aligned_cols=115 Identities=18% Similarity=0.168 Sum_probs=73.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
...+|+++|.+|+|||||+|+|++........-. +.+.........+.+.++++|||||..+...
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~---------------s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~ 101 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQ---------------SEGLRPMMVSRTRAGFTLNIIDTPGLIEGGY 101 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCC---------------CcceeEEEEEEEECCeEEEEEECCCCCchHH
Confidence 5678999999999999999999976432211100 1112222233446789999999999877532
Q ss_pred H---HHHHHh------hcceEEEEeeCCC-CCchhhHHHHHHHHHc-C----CEEEEEEeecCCC
Q 005713 168 E---VERILN------MVEGVLLVVDSVE-GPMPQTRFVLKKALEF-G----HAVVVVVNKIDRP 217 (681)
Q Consensus 168 e---~~~~l~------~aD~~llVvDa~~-g~~~qt~~~l~~~~~~-g----ip~ivviNKiD~~ 217 (681)
. ....++ ..|++|+|.+... .....+..+++.+... | .+.||++++.|..
T Consensus 102 ~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 102 INDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 2 222232 4788999954332 2344445555555442 3 4689999999965
No 332
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.83 E-value=8.1e-10 Score=113.01 Aligned_cols=115 Identities=23% Similarity=0.199 Sum_probs=58.2
Q ss_pred EEEEEeCCCccchhHHHHHHH--------hhcceEEEEeeCCCCCchhh-----HHHHHHHHHcCCEEEEEEeecCCCCC
Q 005713 153 KINIIDTPGHSDFGGEVERIL--------NMVEGVLLVVDSVEGPMPQT-----RFVLKKALEFGHAVVVVVNKIDRPSA 219 (681)
Q Consensus 153 ~i~iiDTPGh~df~~e~~~~l--------~~aD~~llVvDa~~g~~~qt-----~~~l~~~~~~gip~ivviNKiD~~~~ 219 (681)
.+.|+||||+.++...+.... ...=++++++|+..-..+.. ...+....+.++|.|.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 789999999987764444333 23347899999875333222 12223334579999999999999763
Q ss_pred CcccchhhH--------------HHHHHHhhc--ccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 220 RPDYVINST--------------FELFIELNA--TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 220 ~~~~~~~ei--------------~~~~~~l~~--~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
..+..++.. ..+..++.. .+.....+++++|+.++. ++..|+..|-+.
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~----------~~~~L~~~id~a 235 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGE----------GMEELLAAIDKA 235 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTT----------THHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChH----------HHHHHHHHHHHH
Confidence 211111111 111111111 111122379999999998 888888877543
No 333
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.82 E-value=1.8e-08 Score=91.44 Aligned_cols=146 Identities=16% Similarity=0.194 Sum_probs=95.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC-eEEEEEeCCCccchh
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND-TKINIIDTPGHSDFG 166 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-~~i~iiDTPGh~df~ 166 (681)
+-.+|.++|--++|||||+..|-..... ..-+..|.. ...+.+.+ .++|+||..|+....
T Consensus 16 rEirilllGldnAGKTT~LKqL~sED~~---------------hltpT~GFn----~k~v~~~g~f~LnvwDiGGqr~IR 76 (185)
T KOG0074|consen 16 REIRILLLGLDNAGKTTFLKQLKSEDPR---------------HLTPTNGFN----TKKVEYDGTFHLNVWDIGGQRGIR 76 (185)
T ss_pred ceEEEEEEecCCCcchhHHHHHccCChh---------------hccccCCcc----eEEEeecCcEEEEEEecCCccccc
Confidence 4567999999999999999999653221 111112333 33456665 899999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCC-CchhhHHHHHHH----HHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 167 GEVERILNMVEGVLLVVDSVEG-PMPQTRFVLKKA----LEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g-~~~qt~~~l~~~----~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
+-+..++...|++|+|||+++. .+..+-+++-.+ +-..+|+.++.||-|+..+-.. +++...+ ++. .-..
T Consensus 77 pyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~---eeia~kl-nl~-~lrd 151 (185)
T KOG0074|consen 77 PYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV---EEIALKL-NLA-GLRD 151 (185)
T ss_pred hhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcch---HHHHHhc-chh-hhhh
Confidence 9999999999999999997763 222332333222 2235899999999998754321 1111110 000 0011
Q ss_pred CCceEEEeecccCCCC
Q 005713 242 CDFQAIYASGIQGKAG 257 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~ 257 (681)
..+.+-.+||.++.++
T Consensus 152 RswhIq~csals~eg~ 167 (185)
T KOG0074|consen 152 RSWHIQECSALSLEGS 167 (185)
T ss_pred ceEEeeeCccccccCc
Confidence 1356778999999843
No 334
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=98.82 E-value=1.9e-08 Score=85.70 Aligned_cols=79 Identities=19% Similarity=0.371 Sum_probs=67.7
Q ss_pred eEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEe--cc--c
Q 005713 289 LQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC--GI--D 364 (681)
Q Consensus 289 ~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~--gl--~ 364 (681)
|++.|.+++..++.|.++.|||.+|++++||++.+.|.+.. .+|++|.. ++.++++|.|||.|+++ ++ +
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~~~---~~V~sI~~----~~~~~~~a~aGd~v~i~l~~~~~~ 73 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLGEE---TRVRSIQV----HGKDVEEAKAGDRVALNLTGVDAK 73 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCCce---EEEEEEEE----CCcCcCEEcCCCEEEEEEcCCCHH
Confidence 67899999999999999999999999999999999998754 48999954 45778999999999994 44 4
Q ss_pred ccccCCeeec
Q 005713 365 DIQIGETIAD 374 (681)
Q Consensus 365 ~~~~Gdtl~~ 374 (681)
++..||.|++
T Consensus 74 ~i~~G~vl~~ 83 (83)
T cd03696 74 DLERGDVLSS 83 (83)
T ss_pred HcCCccEEcC
Confidence 7888998874
No 335
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.82 E-value=1.1e-07 Score=99.61 Aligned_cols=123 Identities=22% Similarity=0.339 Sum_probs=75.3
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCccchh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDFG 166 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df~ 166 (681)
.+||.|+|.+|.|||||++.|+......... . .+.......+..++......+.-.+ ..++||||||+.|..
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~-~-----~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i 77 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDS-S-----IPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNI 77 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccc-c-----ccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccc
Confidence 3689999999999999999999864432210 0 0111112233455555555555554 478899999976532
Q ss_pred H------HH--------HHHH-------------hhcceEEEEeeCC-CCCchhhHHHHHHHHHcCCEEEEEEeecCCCC
Q 005713 167 G------EV--------ERIL-------------NMVEGVLLVVDSV-EGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS 218 (681)
Q Consensus 167 ~------e~--------~~~l-------------~~aD~~llVvDa~-~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~ 218 (681)
. .+ ..++ ..+|+||++++++ .|+.+.+.+.++.+.+ .+++|.|+.|.|...
T Consensus 78 ~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 78 DNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-RVNVIPVIAKADTLT 156 (281)
T ss_dssp THCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-TSEEEEEESTGGGS-
T ss_pred cchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-cccEEeEEecccccC
Confidence 1 11 1111 1267899999986 5788888888877765 489999999999764
No 336
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=98.81 E-value=2e-08 Score=86.34 Aligned_cols=82 Identities=21% Similarity=0.355 Sum_probs=67.8
Q ss_pred eEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEe--cc--c
Q 005713 289 LQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC--GI--D 364 (681)
Q Consensus 289 ~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~--gl--~ 364 (681)
|++.|.+++..++.|+++.|+|.+|++++||.|.+.|.+.. ...+|++|.. ++.++++|.|||.|++. ++ +
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~~-~~~~V~si~~----~~~~~~~a~~G~~v~l~l~~~~~~ 75 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGET-LKTTVTGIEM----FRKTLDEAEAGDNVGVLLRGVKRE 75 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCCC-ceEEEEEEEE----CCcCCCEECCCCEEEEEECCCCHH
Confidence 67889999998999999999999999999999999886321 1348999954 45689999999999994 55 3
Q ss_pred ccccCCeeecc
Q 005713 365 DIQIGETIADK 375 (681)
Q Consensus 365 ~~~~Gdtl~~~ 375 (681)
++..|+.|++.
T Consensus 76 ~v~rG~vl~~~ 86 (87)
T cd03697 76 DVERGMVLAKP 86 (87)
T ss_pred HcCCccEEecC
Confidence 68899999874
No 337
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.78 E-value=1.1e-08 Score=94.11 Aligned_cols=163 Identities=13% Similarity=0.180 Sum_probs=118.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
..+|+++|....|||||+-......... ..+...|+...-+...+...+..+.|||..|+++|...
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de--------------~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~ 85 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDE--------------EYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINM 85 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHH--------------HHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhcc
Confidence 5789999999999999998887654421 12233477777777777777788999999999999988
Q ss_pred HHHHHhhcceEEEEeeCCCC-CchhhHHHHHHHHHcCCE--EEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCce
Q 005713 169 VERILNMVEGVLLVVDSVEG-PMPQTRFVLKKALEFGHA--VVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQ 245 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g-~~~qt~~~l~~~~~~gip--~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~p 245 (681)
..-+.+.+-++|+++|-+.. ......+|.++++..+.. .|+|++|-|..-.-+.+...++...... ....++.+
T Consensus 86 lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~---YAk~mnAs 162 (205)
T KOG1673|consen 86 LPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARK---YAKVMNAS 162 (205)
T ss_pred CceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHH---HHHHhCCc
Confidence 88888888899999997764 334556788888887642 5788999997543333333333332222 12334567
Q ss_pred EEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 246 vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.|++|+-+.. +++.+|..++..+
T Consensus 163 L~F~Sts~sI----------Nv~KIFK~vlAkl 185 (205)
T KOG1673|consen 163 LFFCSTSHSI----------NVQKIFKIVLAKL 185 (205)
T ss_pred EEEeeccccc----------cHHHHHHHHHHHH
Confidence 9999999988 8888888776544
No 338
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.78 E-value=3.5e-08 Score=95.07 Aligned_cols=64 Identities=23% Similarity=0.251 Sum_probs=47.2
Q ss_pred CeEEEEEeCCCccch----hHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHH-HHcCCEEEEEEeec
Q 005713 151 DTKINIIDTPGHSDF----GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKA-LEFGHAVVVVVNKI 214 (681)
Q Consensus 151 ~~~i~iiDTPGh~df----~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~-~~~gip~ivviNKi 214 (681)
...+.|+||||..+. ...+..++..+|.+|+|+++...........+... .......++|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 356999999998542 25677888999999999999987765555555444 44556689999995
No 339
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=1.8e-08 Score=96.11 Aligned_cols=145 Identities=15% Similarity=0.106 Sum_probs=97.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
.+++++++|..+.||||++++.+...+.-....++ |.........-..+..+++.|||.|++.|.+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~--------------Gv~~~pl~f~tn~g~irf~~wdtagqEk~gg 74 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATL--------------GVEVHPLLFDTNRGQIRFNVWDTAGQEKKGG 74 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcc--------------eeEEeeeeeecccCcEEEEeeecccceeecc
Confidence 47899999999999999999999876654444443 4444333333333348999999999999998
Q ss_pred HHHHHHhhcceEEEEeeCCCCCchhhHH-HHH-HHHH-cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCc
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMPQTRF-VLK-KALE-FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~qt~~-~l~-~~~~-~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~ 244 (681)
.-..++-...++++++|....+.-+... |.+ .++. .++|+++++||.|..... +... .+. .....++
T Consensus 75 lrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~---~k~k------~v~-~~rkknl 144 (216)
T KOG0096|consen 75 LRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARK---VKAK------PVS-FHRKKNL 144 (216)
T ss_pred cccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccc---cccc------cce-eeecccc
Confidence 8777788889999999987654433222 222 2222 258999999999964321 0000 000 0122356
Q ss_pred eEEEeecccCCC
Q 005713 245 QAIYASGIQGKA 256 (681)
Q Consensus 245 pvi~~SA~~G~~ 256 (681)
..+++||+++.|
T Consensus 145 ~y~~iSaksn~N 156 (216)
T KOG0096|consen 145 QYYEISAKSNYN 156 (216)
T ss_pred eeEEeecccccc
Confidence 689999999983
No 340
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.76 E-value=4.6e-08 Score=81.55 Aligned_cols=80 Identities=30% Similarity=0.478 Sum_probs=66.4
Q ss_pred eEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEecccc--c
Q 005713 289 LQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDD--I 366 (681)
Q Consensus 289 ~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~--~ 366 (681)
+.++|++++++++.|+++++||++|+|++||.+.+.+.+. ....+|++|+.+. .+++++.|||++++.+.+. +
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~~-~~~~~i~~i~~~~----~~~~~~~aG~~~~~~~~~~~~~ 75 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGGG-GVKGKVKSLKRFK----GEVDEAVAGDIVGIVLKDKDDI 75 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCCc-eeEEEEeEeEecC----ceeceecCCCEEEEEEcccccc
Confidence 4678999999999999999999999999999999988421 1235888997664 5788999999999977554 8
Q ss_pred ccCCeee
Q 005713 367 QIGETIA 373 (681)
Q Consensus 367 ~~Gdtl~ 373 (681)
.+||+++
T Consensus 76 ~~g~~l~ 82 (83)
T cd01342 76 KIGDTLT 82 (83)
T ss_pred CCCCEec
Confidence 8999985
No 341
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.75 E-value=2.4e-07 Score=85.38 Aligned_cols=163 Identities=18% Similarity=0.261 Sum_probs=108.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccc--cceeeeeeccchhhcccceeEEeeeeEEeeC---CeEEEEEeCCCc
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN--QTVKERIMDSNDLERERGITILSKNTSITYN---DTKINIIDTPGH 162 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~--~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---~~~i~iiDTPGh 162 (681)
+.-+|+++|.-++|||.++++|++........ .++++.+ ..+++.+ ...+.|.||.|.
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY-----------------~~svet~rgarE~l~lyDTaGl 70 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIY-----------------VASVETDRGAREQLRLYDTAGL 70 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhhe-----------------eEeeecCCChhheEEEeecccc
Confidence 45689999999999999999999876554321 2222211 2223322 247899999999
Q ss_pred cchhHHH-HHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHc-----CCEEEEEEeecCCCCCCcccchhhHHHHHHHhh
Q 005713 163 SDFGGEV-ERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF-----GHAVVVVVNKIDRPSARPDYVINSTFELFIELN 236 (681)
Q Consensus 163 ~df~~e~-~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~-----gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~ 236 (681)
.+...+. ..++..+|+.+||+|..+...-|-.+.++.-... .+|++|..||+|+.+.+ ++..+....+
T Consensus 71 q~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~--~vd~d~A~~W---- 144 (198)
T KOG3883|consen 71 QGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPR--EVDMDVAQIW---- 144 (198)
T ss_pred cCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccch--hcCHHHHHHH----
Confidence 8885555 4577889999999998876555555555554433 37999999999986432 3333332222
Q ss_pred cccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCcccc
Q 005713 237 ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEK 285 (681)
Q Consensus 237 ~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~ 285 (681)
+..+ .+..+.++|.... .+.+.|..+...+..|....
T Consensus 145 a~rE--kvkl~eVta~dR~----------sL~epf~~l~~rl~~pqskS 181 (198)
T KOG3883|consen 145 AKRE--KVKLWEVTAMDRP----------SLYEPFTYLASRLHQPQSKS 181 (198)
T ss_pred Hhhh--heeEEEEEeccch----------hhhhHHHHHHHhccCCcccc
Confidence 2122 3457888888776 67777888887777775433
No 342
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.75 E-value=4.1e-08 Score=99.30 Aligned_cols=153 Identities=17% Similarity=0.113 Sum_probs=105.8
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCc----
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH---- 162 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh---- 162 (681)
.+...+++.|.+++|||+|++.++.......... . +.|-|.... ...-+..+.++|.||+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k-----------~--K~g~Tq~in---~f~v~~~~~~vDlPG~~~a~ 197 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSK-----------S--KNGKTQAIN---HFHVGKSWYEVDLPGYGRAG 197 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcC-----------C--CCccceeee---eeeccceEEEEecCCccccc
Confidence 3457899999999999999999986532211000 0 224443332 3334568999999993
Q ss_pred ------cchhHHHHHHHhhc---ceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCC---cccchhhHHH
Q 005713 163 ------SDFGGEVERILNMV---EGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSAR---PDYVINSTFE 230 (681)
Q Consensus 163 ------~df~~e~~~~l~~a---D~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~---~~~~~~ei~~ 230 (681)
.|+...+..++-.- -.+.|++|++-++.+-+...+..+.+.++|..+|+||||+...- .......+..
T Consensus 198 y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~ 277 (320)
T KOG2486|consen 198 YGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKI 277 (320)
T ss_pred CCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCcccccee
Confidence 56777777776443 35788899999999999999999999999999999999975321 1222233333
Q ss_pred HHHHhhcccccCCceEEEeecccCC
Q 005713 231 LFIELNATDEQCDFQAIYASGIQGK 255 (681)
Q Consensus 231 ~~~~l~~~~~~~~~pvi~~SA~~G~ 255 (681)
.|..+....-...+|++++|+.++.
T Consensus 278 ~f~~l~~~~f~~~~Pw~~~Ssvt~~ 302 (320)
T KOG2486|consen 278 NFQGLIRGVFLVDLPWIYVSSVTSL 302 (320)
T ss_pred ehhhccccceeccCCceeeeccccc
Confidence 3434443333456899999999998
No 343
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.73 E-value=4e-08 Score=108.13 Aligned_cols=145 Identities=19% Similarity=0.164 Sum_probs=98.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
..+|+++|..|+||||||-+|+...+...-+... + -|+|- ..+.-......|+||+-..+-...
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl-----~--------~i~IP---advtPe~vpt~ivD~ss~~~~~~~ 72 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRL-----P--------RILIP---ADVTPENVPTSIVDTSSDSDDRLC 72 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhhccccccccC-----C--------ccccC---CccCcCcCceEEEecccccchhHH
Confidence 4569999999999999999999987754322211 1 23443 334445567899999988777777
Q ss_pred HHHHHhhcceEEEEeeCCC-----CCchhhHHHHHHHHH--cCCEEEEEEeecCCCCCCcc--c-chhhHHHHHHHhhcc
Q 005713 169 VERILNMVEGVLLVVDSVE-----GPMPQTRFVLKKALE--FGHAVVVVVNKIDRPSARPD--Y-VINSTFELFIELNAT 238 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~-----g~~~qt~~~l~~~~~--~gip~ivviNKiD~~~~~~~--~-~~~ei~~~~~~l~~~ 238 (681)
+..-++.||.+++|++.++ +++..|.-+++.... +++|+|+|.||+|....+.. + ...-|...|.++..
T Consensus 73 l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEt- 151 (625)
T KOG1707|consen 73 LRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIET- 151 (625)
T ss_pred HHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHH-
Confidence 7888999999999997665 333333333333321 35899999999998755433 1 13334444444433
Q ss_pred cccCCceEEEeecccCCCC
Q 005713 239 DEQCDFQAIYASGIQGKAG 257 (681)
Q Consensus 239 ~~~~~~pvi~~SA~~G~~~ 257 (681)
+|.+||++-.++
T Consensus 152 -------ciecSA~~~~n~ 163 (625)
T KOG1707|consen 152 -------CIECSALTLANV 163 (625)
T ss_pred -------HHhhhhhhhhhh
Confidence 789999988843
No 344
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.73 E-value=7.9e-08 Score=95.83 Aligned_cols=103 Identities=14% Similarity=0.141 Sum_probs=64.5
Q ss_pred CeEEEEEeCCCc--cchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhH
Q 005713 151 DTKINIIDTPGH--SDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINST 228 (681)
Q Consensus 151 ~~~i~iiDTPGh--~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei 228 (681)
+....+|+|.|. .... . ...+|.+|+|+|+.++...+.. ........-++++||+|+.+.. ...++.+
T Consensus 91 ~~D~iiIEt~G~~l~~~~---~--~~l~~~~i~vvD~~~~~~~~~~----~~~qi~~ad~~~~~k~d~~~~~-~~~~~~~ 160 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATF---S--PELADLTIFVIDVAAGDKIPRK----GGPGITRSDLLVINKIDLAPMV-GADLGVM 160 (199)
T ss_pred CCCEEEEECCCCCccccc---c--hhhhCcEEEEEEcchhhhhhhh----hHhHhhhccEEEEEhhhccccc-cccHHHH
Confidence 357789999993 1111 1 2236899999999876553211 1111122338999999997421 1122333
Q ss_pred HHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 229 FELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 229 ~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.+....+.. ..|++++||++|+ |++++++++.++.
T Consensus 161 ~~~~~~~~~-----~~~i~~~Sa~~g~----------gi~el~~~i~~~~ 195 (199)
T TIGR00101 161 ERDAKKMRG-----EKPFIFTNLKTKE----------GLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHhCC-----CCCEEEEECCCCC----------CHHHHHHHHHhhc
Confidence 333333321 3679999999999 9999999998764
No 345
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.70 E-value=9.9e-08 Score=99.39 Aligned_cols=171 Identities=18% Similarity=0.220 Sum_probs=90.3
Q ss_pred ccCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhc--cccee---EEeeee-------------
Q 005713 84 MRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLER--ERGIT---ILSKNT------------- 145 (681)
Q Consensus 84 ~~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~--erGiT---i~~~~~------------- 145 (681)
.......-|.|+|.+|+|||||+++++...........+........+.++ ..|+. +.....
T Consensus 99 ~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI~~~g~pvvqi~tG~~Chl~a~mv~~Al~ 178 (290)
T PRK10463 99 FAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQVNTGKGCHLDAQMIADAAP 178 (290)
T ss_pred HHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHHHhcCCcEEEecCCCCCcCcHHHHHHHHH
Confidence 445678899999999999999999998763221111111111111112222 11221 111000
Q ss_pred EEeeCCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccch
Q 005713 146 SITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVI 225 (681)
Q Consensus 146 ~~~~~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~ 225 (681)
.+...+..+.||++-|.--.-... -+. .+.-+.|++..+|... .+++-..+...-++|+||+|+.... +.-+
T Consensus 179 ~L~~~~~d~liIEnvGnLvcPa~f--dlg-e~~~v~vlsV~eg~dk----plKyp~~f~~ADIVVLNKiDLl~~~-~~dl 250 (290)
T PRK10463 179 RLPLDDNGILFIENVGNLVCPASF--DLG-EKHKVAVLSVTEGEDK----PLKYPHMFAAASLMLLNKVDLLPYL-NFDV 250 (290)
T ss_pred HHhhcCCcEEEEECCCCccCCCcc--chh-hceeEEEEECcccccc----chhccchhhcCcEEEEEhHHcCccc-HHHH
Confidence 011123467788888741000000 011 1234567777766321 1122222345679999999996421 1123
Q ss_pred hhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 226 NSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 226 ~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
+++.+.+..+.. ..+++++||++|. |++.|+++|...
T Consensus 251 e~~~~~lr~lnp-----~a~I~~vSA~tGe----------Gld~L~~~L~~~ 287 (290)
T PRK10463 251 EKCIACAREVNP-----EIEIILISATSGE----------GMDQWLNWLETQ 287 (290)
T ss_pred HHHHHHHHhhCC-----CCcEEEEECCCCC----------CHHHHHHHHHHh
Confidence 333333433332 3579999999999 999999988653
No 346
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.70 E-value=7.9e-08 Score=103.85 Aligned_cols=152 Identities=18% Similarity=0.224 Sum_probs=96.1
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
....++++++|-+++|||||++.+............ +|-.....++.|+-..|+++||||.-|-
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaF----------------TTksL~vGH~dykYlrwQViDTPGILD~ 228 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAF----------------TTKLLLVGHLDYKYLRWQVIDTPGILDR 228 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCccc----------------ccchhhhhhhhhheeeeeecCCccccCc
Confidence 345789999999999999999988765444333222 2344455667777789999999998654
Q ss_pred hHH------HHHHHhhcc---eEEEEeeCCC--CCchhh-HHHHHHHHH--cCCEEEEEEeecCCCCCCcccchhhHHHH
Q 005713 166 GGE------VERILNMVE---GVLLVVDSVE--GPMPQT-RFVLKKALE--FGHAVVVVVNKIDRPSARPDYVINSTFEL 231 (681)
Q Consensus 166 ~~e------~~~~l~~aD---~~llVvDa~~--g~~~qt-~~~l~~~~~--~gip~ivviNKiD~~~~~~~~~~~ei~~~ 231 (681)
--| +..+..+|+ +||++.|-++ |..... ..++..++. .+.|.|+|+||+|....+ ..-++-+++
T Consensus 229 plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~e--dL~~~~~~l 306 (620)
T KOG1490|consen 229 PEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPE--DLDQKNQEL 306 (620)
T ss_pred chhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCcc--ccCHHHHHH
Confidence 333 333333343 5899999775 433222 223333333 378999999999986422 222222333
Q ss_pred HHHhhcccccCCceEEEeecccCCCCC
Q 005713 232 FIELNATDEQCDFQAIYASGIQGKAGL 258 (681)
Q Consensus 232 ~~~l~~~~~~~~~pvi~~SA~~G~~~~ 258 (681)
+..+... .++|++..|..+..++.
T Consensus 307 l~~~~~~---~~v~v~~tS~~~eegVm 330 (620)
T KOG1490|consen 307 LQTIIDD---GNVKVVQTSCVQEEGVM 330 (620)
T ss_pred HHHHHhc---cCceEEEecccchhcee
Confidence 3333221 24789999999988544
No 347
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.64 E-value=4.3e-07 Score=97.71 Aligned_cols=82 Identities=22% Similarity=0.280 Sum_probs=55.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC-----------------e
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND-----------------T 152 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-----------------~ 152 (681)
.+|+|+|.+++|||||+++|++........ .++|+......+.+.+ .
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~ny----------------pftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a 66 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANY----------------PFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPA 66 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeeccc----------------ccccccceEEEEEeccccchhhHHhcCCccccCc
Confidence 579999999999999999998764221111 1344444333333332 3
Q ss_pred EEEEEeCCCccc-------hhHHHHHHHhhcceEEEEeeCCC
Q 005713 153 KINIIDTPGHSD-------FGGEVERILNMVEGVLLVVDSVE 187 (681)
Q Consensus 153 ~i~iiDTPGh~d-------f~~e~~~~l~~aD~~llVvDa~~ 187 (681)
.+.|+||||..+ ........++.+|++++|||+.+
T Consensus 67 ~i~lvD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f~ 108 (364)
T PRK09601 67 TIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFE 108 (364)
T ss_pred eEEEEECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCCc
Confidence 589999999643 22344556789999999999863
No 348
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.61 E-value=2e-07 Score=93.99 Aligned_cols=115 Identities=23% Similarity=0.303 Sum_probs=73.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh---
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG--- 166 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~--- 166 (681)
.+|+++|..|+||||++|.|++.......... ...|.........+.+..+++|||||..|-.
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~--------------~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~ 66 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSA--------------KSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSD 66 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTT--------------SS--SS-EEEEEEETTEEEEEEE--SSEETTEEH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeecccc--------------CCcccccceeeeeecceEEEEEeCCCCCCCcccH
Confidence 47999999999999999999987543221111 1334444455568899999999999975532
Q ss_pred ----HHHHHHH----hhcceEEEEeeCCCCCchhhHHHHHHHHHc-C----CEEEEEEeecCCCCC
Q 005713 167 ----GEVERIL----NMVEGVLLVVDSVEGPMPQTRFVLKKALEF-G----HAVVVVVNKIDRPSA 219 (681)
Q Consensus 167 ----~e~~~~l----~~aD~~llVvDa~~g~~~qt~~~l~~~~~~-g----ip~ivviNKiD~~~~ 219 (681)
.++.+++ ...+++|||++.. .+....+..++.+.+. | ..++|+++..|....
T Consensus 67 ~~~~~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~ 131 (212)
T PF04548_consen 67 EEIIREIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED 131 (212)
T ss_dssp HHHHHHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT
T ss_pred HHHHHHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc
Confidence 2233322 2468899999987 6666677777666543 4 348888888886543
No 349
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.53 E-value=1.1e-06 Score=92.75 Aligned_cols=125 Identities=20% Similarity=0.302 Sum_probs=86.2
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhh-cccceeEEeeeeEEeeCC--eEEEEEeCCCcc
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLE-RERGITILSKNTSITYND--TKINIIDTPGHS 163 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E-~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~ 163 (681)
.-.++|.++|.+|.|||||+|.|+.+.-.... -.|....+ .+.++.+......+.-++ ..+++|||||..
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~-------~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfG 93 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDET-------EIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFG 93 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCC-------CccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcc
Confidence 34689999999999999999999987322111 01111111 344666666666666666 467899999997
Q ss_pred chhHH--------------HHHHHh--------------hcceEEEEeeCC-CCCchhhHHHHHHHHHcCCEEEEEEeec
Q 005713 164 DFGGE--------------VERILN--------------MVEGVLLVVDSV-EGPMPQTRFVLKKALEFGHAVVVVVNKI 214 (681)
Q Consensus 164 df~~e--------------~~~~l~--------------~aD~~llVvDa~-~g~~~qt~~~l~~~~~~gip~ivviNKi 214 (681)
||... ...++. .+++||+.+-.+ +|+.+.+.+.++.+.+ .+.+|-||-|.
T Consensus 94 D~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~Ka 172 (373)
T COG5019 94 DFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNLIPVIAKA 172 (373)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-ccCeeeeeecc
Confidence 76521 112221 257899999855 5899999888887765 47889999999
Q ss_pred CCCCC
Q 005713 215 DRPSA 219 (681)
Q Consensus 215 D~~~~ 219 (681)
|....
T Consensus 173 D~lT~ 177 (373)
T COG5019 173 DTLTD 177 (373)
T ss_pred ccCCH
Confidence 98653
No 350
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.53 E-value=5.5e-07 Score=87.32 Aligned_cols=163 Identities=19% Similarity=0.197 Sum_probs=89.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeee---eccchhhcccceeE---EeeeeE-----E----------
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERI---MDSNDLERERGITI---LSKNTS-----I---------- 147 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~---~D~~~~E~erGiTi---~~~~~~-----~---------- 147 (681)
.+.|.+.|++|||||+|+++++..........-+.+.+ .|.....+..|.-+ .+.... +
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 58899999999999999999987654322222222222 12222222112211 111000 0
Q ss_pred eeCCeEEEEEeCCCc--cchhHHHHHHHhhcc-eEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccc
Q 005713 148 TYNDTKINIIDTPGH--SDFGGEVERILNMVE-GVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYV 224 (681)
Q Consensus 148 ~~~~~~i~iiDTPGh--~df~~e~~~~l~~aD-~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~ 224 (681)
.+.+..+.||.+.|. ..| .....| .-|+|+|..+|...--+-.-- .-..=++|+||.|+...- ..-
T Consensus 93 ~~~~~Dll~iEs~GNL~~~~------sp~L~d~~~v~VidvteGe~~P~K~gP~----i~~aDllVInK~DLa~~v-~~d 161 (202)
T COG0378 93 DFPDLDLLFIESVGNLVCPF------SPDLGDHLRVVVIDVTEGEDIPRKGGPG----IFKADLLVINKTDLAPYV-GAD 161 (202)
T ss_pred cCCcCCEEEEecCcceeccc------CcchhhceEEEEEECCCCCCCcccCCCc----eeEeeEEEEehHHhHHHh-Ccc
Confidence 112246888888882 122 223455 789999999875422110000 001248999999996321 111
Q ss_pred hhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 225 INSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 225 ~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
++...+..+++.. +.|++++|+++|. |++.+++++...
T Consensus 162 levm~~da~~~np-----~~~ii~~n~ktg~----------G~~~~~~~i~~~ 199 (202)
T COG0378 162 LEVMARDAKEVNP-----EAPIIFTNLKTGE----------GLDEWLRFIEPQ 199 (202)
T ss_pred HHHHHHHHHHhCC-----CCCEEEEeCCCCc----------CHHHHHHHHHhh
Confidence 1222222222222 4689999999999 888888887654
No 351
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=2.9e-06 Score=90.24 Aligned_cols=124 Identities=19% Similarity=0.263 Sum_probs=85.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCe--EEEEEeCCCccch
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDT--KINIIDTPGHSDF 165 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~--~i~iiDTPGh~df 165 (681)
--+++.++|.+|.|||||+|.|+....... +-.+....+..+..++......+.-++. .++++||||..|+
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~-------~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~ 92 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGN-------REVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDA 92 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCC-------cccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccc
Confidence 358999999999999999999988733211 0011222233335566666666666654 6789999998765
Q ss_pred hH--------------HHHHHHh-------------hcceEEEEeeCC-CCCchhhHHHHHHHHHcCCEEEEEEeecCCC
Q 005713 166 GG--------------EVERILN-------------MVEGVLLVVDSV-EGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (681)
Q Consensus 166 ~~--------------e~~~~l~-------------~aD~~llVvDa~-~g~~~qt~~~l~~~~~~gip~ivviNKiD~~ 217 (681)
.. ....++. .+++||+.+..+ +|+.+.+.+.++.+.. .+.+|-|+-|.|..
T Consensus 93 vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 93 VDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKADTL 171 (366)
T ss_pred ccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeeccccC
Confidence 41 1122221 367899999965 5788988888777654 68899999999986
Q ss_pred CC
Q 005713 218 SA 219 (681)
Q Consensus 218 ~~ 219 (681)
..
T Consensus 172 T~ 173 (366)
T KOG2655|consen 172 TK 173 (366)
T ss_pred CH
Confidence 54
No 352
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=1.2e-06 Score=91.62 Aligned_cols=131 Identities=21% Similarity=0.300 Sum_probs=95.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCcccccc---cee--eeeeccchhhcccceeEEeee-eEEe-------------
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQ---TVK--ERIMDSNDLERERGITILSKN-TSIT------------- 148 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~---~~~--~~~~D~~~~E~erGiTi~~~~-~~~~------------- 148 (681)
..+-|.++|.-..||||+++.|+.+...-.+.+ +.. ..+|...+++.-.|.+..... ..|.
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 456699999999999999999998865422211 111 335555555554555443321 0010
Q ss_pred ----eCC---eEEEEEeCCCc-----------cchhHHHHHHHhhcceEEEEeeCCC-CCchhhHHHHHHHHHcCCEEEE
Q 005713 149 ----YND---TKINIIDTPGH-----------SDFGGEVERILNMVEGVLLVVDSVE-GPMPQTRFVLKKALEFGHAVVV 209 (681)
Q Consensus 149 ----~~~---~~i~iiDTPGh-----------~df~~e~~~~l~~aD~~llVvDa~~-g~~~qt~~~l~~~~~~gip~iv 209 (681)
..+ .+++||||||. .||.+..+.....||.++|++|+.. .+...+.+++..++.+.-.+-|
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRV 216 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRV 216 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeEE
Confidence 011 26999999996 5788888889999999999999876 6788999999999988889999
Q ss_pred EEeecCCCC
Q 005713 210 VVNKIDRPS 218 (681)
Q Consensus 210 viNKiD~~~ 218 (681)
|+||.|..+
T Consensus 217 VLNKADqVd 225 (532)
T KOG1954|consen 217 VLNKADQVD 225 (532)
T ss_pred EeccccccC
Confidence 999999764
No 353
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.49 E-value=2.6e-07 Score=90.98 Aligned_cols=117 Identities=16% Similarity=0.257 Sum_probs=85.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC-eEEEEEeCCCccchhH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND-TKINIIDTPGHSDFGG 167 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-~~i~iiDTPGh~df~~ 167 (681)
.++|.++|.+|+|||++=..+..+....... .-|-||+....++.+-| .-+++||+.|++.|..
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~---------------rlg~tidveHsh~RflGnl~LnlwDcGgqe~fme 68 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTR---------------RLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFME 68 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhh---------------ccCCcceeeehhhhhhhhheeehhccCCcHHHHH
Confidence 4789999999999999877776432221111 12778888777776655 7899999999987764
Q ss_pred HHH-----HHHhhcceEEEEeeCCCCCchhhHHHHHHHHHc------CCEEEEEEeecCCCCCC
Q 005713 168 EVE-----RILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF------GHAVVVVVNKIDRPSAR 220 (681)
Q Consensus 168 e~~-----~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~------gip~ivviNKiD~~~~~ 220 (681)
... ..++.++.+++|+|+....+..+..+.+.+.+. ...+++.+.|+|+...+
T Consensus 69 n~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 69 NYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred HHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccc
Confidence 433 357789999999999887666666666555442 35689999999997554
No 354
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.45 E-value=9.8e-09 Score=97.46 Aligned_cols=160 Identities=18% Similarity=0.263 Sum_probs=103.8
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC---eEEEEEeCCCc
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND---TKINIIDTPGH 162 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~---~~i~iiDTPGh 162 (681)
++...++.|+|.-++|||+++.+.+.+.+......++ |.....+ -+.|++ .++.|||..|+
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtI--------------gvdfalk--Vl~wdd~t~vRlqLwdIagQ 85 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATI--------------GVDFALK--VLQWDDKTIVRLQLWDIAGQ 85 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHH--------------hHHHHHH--HhccChHHHHHHHHhcchhh
Confidence 4457889999999999999999999887654444433 2222222 244554 46789999999
Q ss_pred cchhHHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH-----cC--CEEEEEEeecCCCCCCcccchhhHHHHHH-
Q 005713 163 SDFGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE-----FG--HAVVVVVNKIDRPSARPDYVINSTFELFI- 233 (681)
Q Consensus 163 ~df~~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~-----~g--ip~ivviNKiD~~~~~~~~~~~ei~~~~~- 233 (681)
+.|+.+..-+++.+.++.+|+|.+.... ..+..+.+.+.. .| +|+++..||||.......+.- ...+.|.
T Consensus 86 erfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~-~~~d~f~k 164 (229)
T KOG4423|consen 86 ERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEAT-RQFDNFKK 164 (229)
T ss_pred hhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhH-HHHHHHHh
Confidence 9999988889999999999999876443 333333332221 23 457888999997643211111 1222222
Q ss_pred HhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 234 ELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 234 ~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
+-+. ...+.+|++.+. ++.+..+.+++.+
T Consensus 165 engf------~gwtets~Kenk----------ni~Ea~r~lVe~~ 193 (229)
T KOG4423|consen 165 ENGF------EGWTETSAKENK----------NIPEAQRELVEKI 193 (229)
T ss_pred ccCc------cceeeecccccc----------ChhHHHHHHHHHH
Confidence 2222 137899999988 5555555555443
No 355
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.44 E-value=4.3e-07 Score=86.68 Aligned_cols=96 Identities=21% Similarity=0.235 Sum_probs=70.8
Q ss_pred hhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCc
Q 005713 165 FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (681)
Q Consensus 165 f~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~ 244 (681)
|......+++.+|.+|+|+|+.++...+...+...+...+.|+++|+||+|+.... ...+...... ....
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~-------~~~~ 71 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKE---VLEKWKSIKE-------SEGI 71 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHH---HHHHHHHHHH-------hCCC
Confidence 34566778888999999999988777777666666666789999999999985321 1111111111 1235
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
+++++||++|. |+..|++.+.+.+|.
T Consensus 72 ~~~~iSa~~~~----------gi~~L~~~l~~~~~~ 97 (156)
T cd01859 72 PVVYVSAKERL----------GTKILRRTIKELAKI 97 (156)
T ss_pred cEEEEEccccc----------cHHHHHHHHHHHHhh
Confidence 79999999998 999999999988873
No 356
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.38 E-value=5.8e-06 Score=93.68 Aligned_cols=116 Identities=19% Similarity=0.235 Sum_probs=71.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh-
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG- 166 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~- 166 (681)
...+|+++|.+|+|||||+|.|++......... ..++| ........+.+..+++|||||..+..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~--------------~~~TT-r~~ei~~~idG~~L~VIDTPGL~dt~~ 181 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAF--------------GMGTT-SVQEIEGLVQGVKIRVIDTPGLKSSAS 181 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCC--------------CCCce-EEEEEEEEECCceEEEEECCCCCcccc
Confidence 356899999999999999999998643221110 01222 22333445678899999999987642
Q ss_pred -----HH----HHHHHh--hcceEEEEeeCCCC-CchhhHHHHHHHHH-cC----CEEEEEEeecCCCC
Q 005713 167 -----GE----VERILN--MVEGVLLVVDSVEG-PMPQTRFVLKKALE-FG----HAVVVVVNKIDRPS 218 (681)
Q Consensus 167 -----~e----~~~~l~--~aD~~llVvDa~~g-~~~qt~~~l~~~~~-~g----ip~ivviNKiD~~~ 218 (681)
.+ +..++. .+|++|+|...... ...+....++.+.+ +| ...|||.+..|...
T Consensus 182 dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 182 DQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred chHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 12 222333 36888888765422 22234445555543 24 35899999999864
No 357
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.36 E-value=3.8e-06 Score=71.70 Aligned_cols=78 Identities=22% Similarity=0.305 Sum_probs=65.0
Q ss_pred EEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEE--eccccccc
Q 005713 291 MLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGIDDIQI 368 (681)
Q Consensus 291 ~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~~~~~ 368 (681)
+.|.+++.....|.++.|||.+|++++|+.+.+.+.+......+|.+|..+ +.++++|.+|+-|+| .+++++..
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~~~~~g~i~sl~~~----~~~v~~a~~G~ecgi~l~~~~d~~~ 78 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGEVIYEGKISSLKRF----KDDVKEVKKGYECGITLENFNDIKV 78 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCCEEEEEEEEEEEEc----CcccCEECCCCEEEEEEeCcccCCC
Confidence 446666666667899999999999999999999999865445789999644 578999999999999 57789999
Q ss_pred CCee
Q 005713 369 GETI 372 (681)
Q Consensus 369 Gdtl 372 (681)
||+|
T Consensus 79 Gdvi 82 (84)
T cd03692 79 GDII 82 (84)
T ss_pred CCEE
Confidence 9987
No 358
>PTZ00258 GTP-binding protein; Provisional
Probab=98.34 E-value=2.4e-06 Score=93.04 Aligned_cols=85 Identities=22% Similarity=0.306 Sum_probs=59.6
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC---------------
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--------------- 151 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--------------- 151 (681)
..-.+|+|+|.+++|||||+++|.+........ .++|+......+.+.+
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~----------------pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~ 82 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENF----------------PFCTIDPNTARVNVPDERFDWLCKHFKPKSI 82 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCC----------------CCCcccceEEEEecccchhhHHHHHcCCccc
Confidence 345689999999999999999997654322111 1455555555555442
Q ss_pred --eEEEEEeCCCccc-------hhHHHHHHHhhcceEEEEeeCCC
Q 005713 152 --TKINIIDTPGHSD-------FGGEVERILNMVEGVLLVVDSVE 187 (681)
Q Consensus 152 --~~i~iiDTPGh~d-------f~~e~~~~l~~aD~~llVvDa~~ 187 (681)
..+.++||||... ........++.+|++++|||+.+
T Consensus 83 ~~aqi~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f~ 127 (390)
T PTZ00258 83 VPAQLDITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAFE 127 (390)
T ss_pred CCCCeEEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCCC
Confidence 3589999999642 33455667888999999999863
No 359
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.33 E-value=1.3e-06 Score=91.14 Aligned_cols=80 Identities=24% Similarity=0.297 Sum_probs=55.4
Q ss_pred EEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCe-----------------EE
Q 005713 92 IAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDT-----------------KI 154 (681)
Q Consensus 92 V~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~-----------------~i 154 (681)
|+|+|.+++|||||+++|++........ .++|+......+.+.+. .+
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~----------------pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i 64 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANY----------------PFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATI 64 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccc----------------cccchhceeeeEEeccchhhhHHHHhCCceeeeeEE
Confidence 5899999999999999998764322111 14454444444444432 58
Q ss_pred EEEeCCCccc-------hhHHHHHHHhhcceEEEEeeCCC
Q 005713 155 NIIDTPGHSD-------FGGEVERILNMVEGVLLVVDSVE 187 (681)
Q Consensus 155 ~iiDTPGh~d-------f~~e~~~~l~~aD~~llVvDa~~ 187 (681)
.++||||..+ ........++.+|++++|||+.+
T Consensus 65 ~lvD~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 65 EFVDIAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred EEEECCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 9999999642 33345566788999999999864
No 360
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=5.3e-06 Score=93.15 Aligned_cols=164 Identities=18% Similarity=0.230 Sum_probs=100.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchh-------------hcccce--------------eE
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDL-------------ERERGI--------------TI 140 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~-------------E~erGi--------------Ti 140 (681)
..-+|+|.|..++||||++|+|+++.-.....+...+.+++-... |...-. .-
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 467899999999999999999998765544333322222111110 000000 11
Q ss_pred EeeeeEEeeCCe-------EEEEEeCCCc---cchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEE
Q 005713 141 LSKNTSITYNDT-------KINIIDTPGH---SDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVV 210 (681)
Q Consensus 141 ~~~~~~~~~~~~-------~i~iiDTPGh---~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivv 210 (681)
......+.|++- .+.++|.||. ..+..++....-.+|.+|||+.|..-.+...+..+..+.+.+..++++
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~KpniFIl 267 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEEKPNIFIL 267 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhccCCcEEEE
Confidence 122334445432 6889999996 567778888889999999999987765555555666666554447777
Q ss_pred EeecCCCCCCcccchhhHHHHHHHhhccc--ccCCceEEEeeccc
Q 005713 211 VNKIDRPSARPDYVINSTFELFIELNATD--EQCDFQAIYASGIQ 253 (681)
Q Consensus 211 iNKiD~~~~~~~~~~~ei~~~~~~l~~~~--~~~~~pvi~~SA~~ 253 (681)
.||.|..... .+..+.+.....++.... +..+ -++++||+.
T Consensus 268 nnkwDasase-~ec~e~V~~Qi~eL~v~~~~eA~D-rvfFVS~~e 310 (749)
T KOG0448|consen 268 NNKWDASASE-PECKEDVLKQIHELSVVTEKEAAD-RVFFVSAKE 310 (749)
T ss_pred echhhhhccc-HHHHHHHHHHHHhcCcccHhhhcC-eeEEEeccc
Confidence 8899976443 344555554443443211 1112 389999764
No 361
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.32 E-value=2.8e-06 Score=87.74 Aligned_cols=149 Identities=23% Similarity=0.228 Sum_probs=97.2
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEee-CCeEEEEEeCCCc--
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY-NDTKINIIDTPGH-- 162 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~i~iiDTPGh-- 162 (681)
......|+++|..|+|||||+++|.+.+-.... .- =.|.+........ .+..+.+.||-|+
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~d-rL---------------FATLDpT~h~a~Lpsg~~vlltDTvGFis 238 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPND-RL---------------FATLDPTLHSAHLPSGNFVLLTDTVGFIS 238 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccc-hh---------------heeccchhhhccCCCCcEEEEeechhhhh
Confidence 345678999999999999999999843322111 11 1123222222222 3567889999996
Q ss_pred -------cchhHHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHHcCCE-------EEEEEeecCCCCCCcccchhh
Q 005713 163 -------SDFGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEFGHA-------VVVVVNKIDRPSARPDYVINS 227 (681)
Q Consensus 163 -------~df~~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~~gip-------~ivviNKiD~~~~~~~~~~~e 227 (681)
+.|....+ -...+|.+|-|+|.++... .|-..++.-+...|+| +|=|=||+|......+.
T Consensus 239 dLP~~LvaAF~ATLe-eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~---- 313 (410)
T KOG0410|consen 239 DLPIQLVAAFQATLE-EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE---- 313 (410)
T ss_pred hCcHHHHHHHHHHHH-HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc----
Confidence 23333222 2456899999999988544 4556778888888885 45567888865432111
Q ss_pred HHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 228 TFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 228 i~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
+. .-.+++||++|. |++++++++-..+.
T Consensus 314 -----------E~---n~~v~isaltgd----------gl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 314 -----------EK---NLDVGISALTGD----------GLEELLKAEETKVA 341 (410)
T ss_pred -----------cc---CCccccccccCc----------cHHHHHHHHHHHhh
Confidence 00 015789999999 99999998876553
No 362
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.30 E-value=9.8e-06 Score=80.37 Aligned_cols=126 Identities=25% Similarity=0.250 Sum_probs=79.5
Q ss_pred cCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCc
Q 005713 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGH 162 (681)
Q Consensus 85 ~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh 162 (681)
..---+||.++|.+|.|||||++.|......... ..|...+-....+.+.+....+.-++ .++++|||||+
T Consensus 42 k~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s-------~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGf 114 (336)
T KOG1547|consen 42 KTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSS-------SSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGF 114 (336)
T ss_pred hccCceEEEEEecCCCCchhhHHHHHHHHHhhcc-------CCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCc
Confidence 3445699999999999999999999864221110 01111111112333444444455555 46889999998
Q ss_pred cchh--------------HHHHHHHh--------------hcceEEEEeeCCC-CCchhhHHHHHHHHHcCCEEEEEEee
Q 005713 163 SDFG--------------GEVERILN--------------MVEGVLLVVDSVE-GPMPQTRFVLKKALEFGHAVVVVVNK 213 (681)
Q Consensus 163 ~df~--------------~e~~~~l~--------------~aD~~llVvDa~~-g~~~qt~~~l~~~~~~gip~ivviNK 213 (681)
.|+. ...+.+++ .+++||+.+.++- ...+-+.++++.+.+ -+.++-|+-|
T Consensus 115 GDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-vvNvvPVIak 193 (336)
T KOG1547|consen 115 GDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-VVNVVPVIAK 193 (336)
T ss_pred ccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-hheeeeeEee
Confidence 7764 11223332 2568999998764 566777787777654 3678889999
Q ss_pred cCCCC
Q 005713 214 IDRPS 218 (681)
Q Consensus 214 iD~~~ 218 (681)
.|-..
T Consensus 194 aDtlT 198 (336)
T KOG1547|consen 194 ADTLT 198 (336)
T ss_pred ccccc
Confidence 99653
No 363
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.20 E-value=4.4e-06 Score=82.54 Aligned_cols=106 Identities=18% Similarity=0.068 Sum_probs=69.0
Q ss_pred CCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccc
Q 005713 160 PGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (681)
Q Consensus 160 PGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~ 239 (681)
|.+..|...+..++..+|++|+|+|+.+........++ ....+.|+++|+||+|+.... .....+...........
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~--~~~~~~~~ilV~NK~Dl~~~~--~~~~~~~~~~~~~~~~~ 94 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLR--LFGGNNPVILVGNKIDLLPKD--KNLVRIKNWLRAKAAAG 94 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhHH--HhcCCCcEEEEEEchhcCCCC--CCHHHHHHHHHHHHHhh
Confidence 44445788889999999999999999875433333332 223478999999999986432 11122222210111000
Q ss_pred ccC-CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 240 EQC-DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 240 ~~~-~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
... ..+++++||++|+ |+++|++.|.+++|
T Consensus 95 ~~~~~~~i~~vSA~~~~----------gi~eL~~~l~~~l~ 125 (190)
T cd01855 95 LGLKPKDVILISAKKGW----------GVEELINAIKKLAK 125 (190)
T ss_pred cCCCcccEEEEECCCCC----------CHHHHHHHHHHHhh
Confidence 111 1258999999999 99999999998876
No 364
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=2.8e-05 Score=82.82 Aligned_cols=89 Identities=18% Similarity=0.319 Sum_probs=57.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEE-----------eeCCeEEEEEe
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSI-----------TYNDTKINIID 158 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~-----------~~~~~~i~iiD 158 (681)
.+++|+|-+++|||||.++|+.........+. ...|...|+..-.. ..+ .+-...+.|+|
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF--------~TIePN~Giv~v~d-~rl~~L~~~~~c~~k~~~~~ve~vD 73 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPF--------CTIEPNVGVVYVPD-CRLDELAEIVKCPPKIRPAPVEFVD 73 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCc--------ccccCCeeEEecCc-hHHHHHHHhcCCCCcEEeeeeEEEE
Confidence 57999999999999999999987633222221 11222333332211 000 01224688999
Q ss_pred CCCcc-------chhHHHHHHHhhcceEEEEeeCCC
Q 005713 159 TPGHS-------DFGGEVERILNMVEGVLLVVDSVE 187 (681)
Q Consensus 159 TPGh~-------df~~e~~~~l~~aD~~llVvDa~~ 187 (681)
.+|.. -.+.....-++.+|+++.|||+++
T Consensus 74 IAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 74 IAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ecccCCCcccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 99962 344556677899999999999874
No 365
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.12 E-value=1.4e-05 Score=79.77 Aligned_cols=85 Identities=22% Similarity=0.327 Sum_probs=63.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch--
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF-- 165 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df-- 165 (681)
.--+|+++|-+.+|||||+..+........... =+|...-...+.|++-.|+++|.||...-
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~ye----------------FTTLtcIpGvi~y~ga~IQllDLPGIieGAs 124 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYE----------------FTTLTCIPGVIHYNGANIQLLDLPGIIEGAS 124 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhcee----------------eeEEEeecceEEecCceEEEecCcccccccc
Confidence 345799999999999999999976533222221 14666667778999999999999997332
Q ss_pred -----hHHHHHHHhhcceEEEEeeCCCC
Q 005713 166 -----GGEVERILNMVEGVLLVVDSVEG 188 (681)
Q Consensus 166 -----~~e~~~~l~~aD~~llVvDa~~g 188 (681)
...+....+.||.+++|+||+..
T Consensus 125 qgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 125 QGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred cCCCCCceEEEEeecccEEEEEecCCcc
Confidence 34455667889999999999864
No 366
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.08 E-value=8.4e-06 Score=79.19 Aligned_cols=99 Identities=17% Similarity=0.243 Sum_probs=69.2
Q ss_pred CCCc-cchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhc
Q 005713 159 TPGH-SDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNA 237 (681)
Q Consensus 159 TPGh-~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~ 237 (681)
-||| .....++...+..+|.+++|+|+.++.......++..+ .+.|+++|+||+|+.+.. . ..+..+.+...
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~~~--~-~~~~~~~~~~~-- 74 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLADPK--K-TKKWLKYFESK-- 74 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCChH--H-HHHHHHHHHhc--
Confidence 3777 45567778889999999999999876655555444433 368999999999985321 1 11111222211
Q ss_pred ccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 238 TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 238 ~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
..+++++||+++. |+..|++.+...+|
T Consensus 75 -----~~~vi~iSa~~~~----------gi~~L~~~l~~~l~ 101 (171)
T cd01856 75 -----GEKVLFVNAKSGK----------GVKKLLKAAKKLLK 101 (171)
T ss_pred -----CCeEEEEECCCcc----------cHHHHHHHHHHHHH
Confidence 2358999999998 89999999988765
No 367
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=98.08 E-value=2.1e-05 Score=69.53 Aligned_cols=76 Identities=22% Similarity=0.299 Sum_probs=59.5
Q ss_pred cCCceEEEEEEeeecC--------CCceEEEEEeecccccCCCEEEEccC-------CCce--eeeEEEeEEEeecccee
Q 005713 285 KDGALQMLATNLEYDE--------HKGRIAIGRLHAGVLRKGMEVRVCTS-------EDSC--RYARISELFVYEKFSRV 347 (681)
Q Consensus 285 ~~~p~~~~V~~~~~d~--------~~G~v~~grV~sG~lk~gd~v~~~~~-------~~~~--~~~kV~~i~~~~g~~~~ 347 (681)
.+.|+.|+|...|... ..|.|+-|+|.+|.|+.||.|.+.|- +... ...+|.+|+ ..+.
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~----~~~~ 77 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLK----AENN 77 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEE----ecCc
Confidence 4678899998888765 88999999999999999999988743 1111 245788885 4456
Q ss_pred ecceecCCCEEEE-eccc
Q 005713 348 SAEIVAAGDICAV-CGID 364 (681)
Q Consensus 348 ~v~~a~aGdiv~i-~gl~ 364 (681)
.+++|.||+.++| ++|+
T Consensus 78 ~l~~a~pGgliGvgT~Ld 95 (113)
T cd03688 78 DLQEAVPGGLIGVGTKLD 95 (113)
T ss_pred cccEEeCCCeEEEccccC
Confidence 8999999999999 4543
No 368
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.07 E-value=1.4e-05 Score=86.65 Aligned_cols=129 Identities=17% Similarity=0.168 Sum_probs=72.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccc---hhhcc------cceeEEeeeeE-------EeeCCe
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSN---DLERE------RGITILSKNTS-------ITYNDT 152 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~---~~E~e------rGiTi~~~~~~-------~~~~~~ 152 (681)
-..++++|++|+||||++..|............+.--..|.. ..|+- .|+.+...... -.+.++
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 468999999999999999999865321100011110111111 11111 13333222111 234567
Q ss_pred EEEEEeCCCccc---hhHHHHHHHhhcc---eEEEEeeCCCCCchhhHHHHHHHHHcCCE-------EEEEEeecCCC
Q 005713 153 KINIIDTPGHSD---FGGEVERILNMVE---GVLLVVDSVEGPMPQTRFVLKKALEFGHA-------VVVVVNKIDRP 217 (681)
Q Consensus 153 ~i~iiDTPGh~d---f~~e~~~~l~~aD---~~llVvDa~~g~~~qt~~~l~~~~~~gip-------~ivviNKiD~~ 217 (681)
.+.||||||... +..+....+..++ -.+||++++.+....+...+......++| -=++++|+|-.
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 999999999763 3333344443333 45999999987665554444444443332 25678999954
No 369
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.06 E-value=1e-05 Score=77.38 Aligned_cols=91 Identities=16% Similarity=0.100 Sum_probs=63.2
Q ss_pred HHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHc--CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceE
Q 005713 169 VERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQA 246 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~--gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pv 246 (681)
+.+++..+|.+++|+|+.+........+.+.+... ++|+|+|+||+|+...+ ++...+..+.. ...+-+
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~------~~~~~~~~~~~---~~~~~~ 72 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTW------VTARWVKILSK---EYPTIA 72 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHH------HHHHHHHHHhc---CCcEEE
Confidence 45678999999999999987666666666666543 48999999999986321 12222222221 112225
Q ss_pred EEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 247 IYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 247 i~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
+++||+++. ++..|++.+.+++
T Consensus 73 ~~iSa~~~~----------~~~~L~~~l~~~~ 94 (157)
T cd01858 73 FHASINNPF----------GKGSLIQLLRQFS 94 (157)
T ss_pred EEeeccccc----------cHHHHHHHHHHHH
Confidence 889999998 8888888887653
No 370
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.03 E-value=1.8e-05 Score=74.38 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=58.7
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHc--CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCc
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~--gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~ 244 (681)
+++.+++..+|.+|+|+|+.++...+...+.+.+... ++|+++|+||+|+... +...+..+.+...+ .
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~---~~~~~~~~~~~~~~-------~ 72 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTE---EQRKAWAEYFKKEG-------I 72 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCH---HHHHHHHHHHHhcC-------C
Confidence 4677889999999999999988877777777777666 8999999999998532 22223333333222 4
Q ss_pred eEEEeecccCC
Q 005713 245 QAIYASGIQGK 255 (681)
Q Consensus 245 pvi~~SA~~G~ 255 (681)
+++++||++|.
T Consensus 73 ~ii~iSa~~~~ 83 (141)
T cd01857 73 VVVFFSALKEN 83 (141)
T ss_pred eEEEEEecCCC
Confidence 68999999886
No 371
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.00 E-value=1.6e-05 Score=83.48 Aligned_cols=99 Identities=19% Similarity=0.277 Sum_probs=70.3
Q ss_pred CCc-cchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcc
Q 005713 160 PGH-SDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT 238 (681)
Q Consensus 160 PGh-~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~ 238 (681)
||| .....++...+..+|.+|+|+|+..........+.+.+ .+.|+|+|+||+|+.+. ....+..+.+..
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~~~---~~~~~~~~~~~~---- 75 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLADP---AVTKQWLKYFEE---- 75 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccCCH---HHHHHHHHHHHH----
Confidence 888 34567788899999999999999876665555444444 36899999999998532 111222222221
Q ss_pred cccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 239 DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 239 ~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
...+++++||+++. |+..|++.+.+.++.
T Consensus 76 ---~~~~vi~iSa~~~~----------gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 76 ---KGIKALAINAKKGK----------GVKKIIKAAKKLLKE 104 (276)
T ss_pred ---cCCeEEEEECCCcc----------cHHHHHHHHHHHHHH
Confidence 12468999999998 889999998887754
No 372
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.97 E-value=0.00012 Score=78.18 Aligned_cols=152 Identities=20% Similarity=0.218 Sum_probs=81.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccc---------hhhcccceeEEeeee-------------
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSN---------DLERERGITILSKNT------------- 145 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~---------~~E~erGiTi~~~~~------------- 145 (681)
....|+++|+.|+||||++..|....... ...+.---.|.. .....+++.+.....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~--g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~ 190 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ--GKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQ 190 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHH
Confidence 35679999999999999999997653211 111110001211 012233444432210
Q ss_pred EEeeCCeEEEEEeCCCccchh----HHHHHHHh--------hcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEee
Q 005713 146 SITYNDTKINIIDTPGHSDFG----GEVERILN--------MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNK 213 (681)
Q Consensus 146 ~~~~~~~~i~iiDTPGh~df~----~e~~~~l~--------~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNK 213 (681)
.....++.+.||||||...+. .++....+ ..+..+||+|+..|-.... ......+.--..-+|+||
T Consensus 191 ~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~--~a~~f~~~~~~~giIlTK 268 (318)
T PRK10416 191 AAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS--QAKAFHEAVGLTGIILTK 268 (318)
T ss_pred HHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH--HHHHHHhhCCCCEEEEEC
Confidence 001356789999999975432 34444433 3567899999986532211 111111111245788999
Q ss_pred cCCCCCCcccchhhHHHHHHHhhcccccCCceEEEeecccCCCC
Q 005713 214 IDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAG 257 (681)
Q Consensus 214 iD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~ 257 (681)
+|.. +..-.+++ ..... ..|+.|++ +|.++
T Consensus 269 lD~t-~~~G~~l~----~~~~~-------~~Pi~~v~--~Gq~~ 298 (318)
T PRK10416 269 LDGT-AKGGVVFA----IADEL-------GIPIKFIG--VGEGI 298 (318)
T ss_pred CCCC-CCccHHHH----HHHHH-------CCCEEEEe--CCCCh
Confidence 9943 33222222 22222 45899998 66643
No 373
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.97 E-value=7.7e-05 Score=72.81 Aligned_cols=66 Identities=26% Similarity=0.293 Sum_probs=54.7
Q ss_pred CCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCC
Q 005713 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (681)
Q Consensus 150 ~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~ 217 (681)
..+.+.|+|||+... .....++..+|.+|+++.............++.+.+.+.|+.+|+||+|..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 578999999996643 355677899999999999887666677888888888899999999999964
No 374
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.92 E-value=1.6e-05 Score=81.98 Aligned_cols=92 Identities=17% Similarity=0.224 Sum_probs=63.0
Q ss_pred hhHHHHHHHhhcceEEEEeeCCCCC--chhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 165 FGGEVERILNMVEGVLLVVDSVEGP--MPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 165 f~~e~~~~l~~aD~~llVvDa~~g~--~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
|......+++.+|.+++|+|+.+.. ......++..+...++|+++|+||+|+.+.+ .+..+..+.+.. .
T Consensus 26 ~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~--~~~~~~~~~~~~-------~ 96 (245)
T TIGR00157 26 KNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDE--DMEKEQLDIYRN-------I 96 (245)
T ss_pred cceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCH--HHHHHHHHHHHH-------C
Confidence 3333334789999999999988643 3344556666666789999999999996432 111122222322 3
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHH
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIM 275 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~ 275 (681)
.++++++||++|. |+.+|++.+.
T Consensus 97 g~~v~~~SAktg~----------gi~eLf~~l~ 119 (245)
T TIGR00157 97 GYQVLMTSSKNQD----------GLKELIEALQ 119 (245)
T ss_pred CCeEEEEecCCch----------hHHHHHhhhc
Confidence 4689999999998 8888887764
No 375
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.91 E-value=6.2e-05 Score=77.77 Aligned_cols=59 Identities=25% Similarity=0.358 Sum_probs=40.4
Q ss_pred cCCEEEEEEeecCCCC----------CCcccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHH
Q 005713 203 FGHAVVVVVNKIDRPS----------ARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFE 272 (681)
Q Consensus 203 ~gip~ivviNKiD~~~----------~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~ 272 (681)
.|+|++||++|+|... +.++.+...++.+...+++ ..||+|++... |++-|..
T Consensus 221 lGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Ga-------aLiyTSvKE~K----------NidllyK 283 (473)
T KOG3905|consen 221 LGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGA-------ALIYTSVKETK----------NIDLLYK 283 (473)
T ss_pred CCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCc-------eeEEeeccccc----------chHHHHH
Confidence 4789999999999731 1223344444444444444 48999999887 8888888
Q ss_pred HHHhhC
Q 005713 273 SIMRCI 278 (681)
Q Consensus 273 ~I~~~l 278 (681)
.|+..+
T Consensus 284 Yivhr~ 289 (473)
T KOG3905|consen 284 YIVHRS 289 (473)
T ss_pred HHHHHh
Confidence 887654
No 376
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.91 E-value=1.9e-05 Score=75.49 Aligned_cols=56 Identities=18% Similarity=0.273 Sum_probs=38.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh 162 (681)
..+|+++|.+|+|||||+|+|+......... ..|.|.......+ +..+.|+||||.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~---------------~~g~T~~~~~~~~---~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAP---------------IPGETKVWQYITL---MKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCC---------------CCCeeEeEEEEEc---CCCEEEEECcCC
Confidence 4679999999999999999998754332211 1255554433222 245889999994
No 377
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.87 E-value=2.6e-05 Score=82.35 Aligned_cols=100 Identities=19% Similarity=0.261 Sum_probs=70.3
Q ss_pred CCCcc-chhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhc
Q 005713 159 TPGHS-DFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNA 237 (681)
Q Consensus 159 TPGh~-df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~ 237 (681)
-|||- .-..++...+..+|.+|+|+|+..........+..... +.|+++|+||+|+.+. ...++..+.+.+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~---~~~~~~~~~~~~~-- 79 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADP---EVTKKWIEYFEEQ-- 79 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCH---HHHHHHHHHHHHc--
Confidence 48883 44567788899999999999998876665554444432 7899999999998532 1122222222211
Q ss_pred ccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 238 TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 238 ~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
..+++++||+++. |+..|++.+...++.
T Consensus 80 -----~~~vi~vSa~~~~----------gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 80 -----GIKALAINAKKGQ----------GVKKILKAAKKLLKE 107 (287)
T ss_pred -----CCeEEEEECCCcc----------cHHHHHHHHHHHHHH
Confidence 2468999999998 888888888877654
No 378
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.87 E-value=1e-05 Score=77.41 Aligned_cols=66 Identities=27% Similarity=0.412 Sum_probs=36.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
+.++++|++|+|||||+|+|+....... +.+ +....+.+.+|.......+ . ....||||||..+|.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t--~~i------s~~~~rGkHTTt~~~l~~l--~-~g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKT--GEI------SEKTGRGKHTTTHRELFPL--P-DGGYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS------S--------------------SEEEEEE--T-TSEEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhh--hhh------hcccCCCcccCCCeeEEec--C-CCcEEEECCCCCccc
Confidence 7899999999999999999998642211 111 0111223344444444444 2 245899999998874
No 379
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.87 E-value=2.5e-05 Score=78.46 Aligned_cols=82 Identities=20% Similarity=0.326 Sum_probs=60.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc-----
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD----- 164 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d----- 164 (681)
-++.++|-+.+|||||+..|.+......... +.|...-...+.|++-++.+.|.||.-+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasye----------------fttl~~vpG~~~y~gaKiqlldlpgiiegakdg 123 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYE----------------FTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDG 123 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCcccccc----------------ceeEEEecceEeccccceeeecCcchhcccccC
Confidence 4799999999999999999976432211111 4566666667789999999999999733
Q ss_pred --hhHHHHHHHhhcceEEEEeeCCC
Q 005713 165 --FGGEVERILNMVEGVLLVVDSVE 187 (681)
Q Consensus 165 --f~~e~~~~l~~aD~~llVvDa~~ 187 (681)
-...+....+.|+.+++|+|+..
T Consensus 124 kgrg~qviavartcnli~~vld~~k 148 (358)
T KOG1487|consen 124 KGRGKQVIAVARTCNLIFIVLDVLK 148 (358)
T ss_pred CCCccEEEEEeecccEEEEEeeccC
Confidence 22445556788999999999764
No 380
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.84 E-value=3e-05 Score=75.54 Aligned_cols=57 Identities=18% Similarity=0.419 Sum_probs=40.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCc
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh 162 (681)
...+|+++|.+++|||||+|+|++....... ...|+|.......+ +..+.++||||.
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~---------------~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVG---------------ATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceec---------------CCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 3468999999999999999999975432211 12377765544433 246899999994
No 381
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.84 E-value=0.00013 Score=70.87 Aligned_cols=123 Identities=22% Similarity=0.264 Sum_probs=65.4
Q ss_pred EEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccch------h---hcccceeEEeeeeE-------------Eee
Q 005713 92 IAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND------L---ERERGITILSKNTS-------------ITY 149 (681)
Q Consensus 92 V~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~------~---E~erGiTi~~~~~~-------------~~~ 149 (681)
++++|++|+||||++..|......... .+----.|... . -.+.|+.+...... ...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~--~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGK--KVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHARE 80 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC--cEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999888754211100 00000011110 0 01223333221110 113
Q ss_pred CCeEEEEEeCCCccch----hHHHHHHHh--hcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCC
Q 005713 150 NDTKINIIDTPGHSDF----GGEVERILN--MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS 218 (681)
Q Consensus 150 ~~~~i~iiDTPGh~df----~~e~~~~l~--~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~ 218 (681)
.++.+.|+||||...+ ..++..... ..|.+++|+|+..+.. ............++ .-+|+||+|...
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~-~~~~~~~~~~~~~~-~~viltk~D~~~ 153 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD-AVNQAKAFNEALGI-TGVILTKLDGDA 153 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH-HHHHHHHHHhhCCC-CEEEEECCcCCC
Confidence 4567899999998633 333322222 3899999999864322 22233333334454 567789999754
No 382
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.84 E-value=2.4e-05 Score=73.44 Aligned_cols=54 Identities=24% Similarity=0.370 Sum_probs=36.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCc
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh 162 (681)
+++++|.+|+|||||+|+|+......... ..|.|...... ...+ .+.||||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~---------------~~~~~~~~~~~--~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSA---------------TPGKTKHFQTI--FLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCC---------------CCCcccceEEE--EeCC-CEEEEECCCc
Confidence 79999999999999999998754321110 11444443333 2322 6899999996
No 383
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.81 E-value=0.0001 Score=70.02 Aligned_cols=59 Identities=27% Similarity=0.269 Sum_probs=40.6
Q ss_pred CCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecC
Q 005713 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKID 215 (681)
Q Consensus 150 ~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD 215 (681)
.++.+.||||||.. ......+..||.+|+|+....+ +-..+.+..-+..--++++||+|
T Consensus 90 ~~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~----D~y~~~k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 90 AGFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAG----DDIQAIKAGIMEIADIVVVNKAD 148 (148)
T ss_pred cCCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCch----hHHHHhhhhHhhhcCEEEEeCCC
Confidence 36789999999964 3344689999999999987622 22222333333445689999998
No 384
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.81 E-value=0.00013 Score=80.32 Aligned_cols=125 Identities=17% Similarity=0.136 Sum_probs=68.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccc--------h-hhcccceeEEeeeeE-------------
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSN--------D-LERERGITILSKNTS------------- 146 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~--------~-~E~erGiTi~~~~~~------------- 146 (681)
...|+++|..|+||||++..|........ ..+.---.|.. . .....++.+......
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G--~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKG--FKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 46789999999999999999874321100 01100001111 1 111234443321110
Q ss_pred EeeCCeEEEEEeCCCccchh----HHHHHHHhh--cceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCC
Q 005713 147 ITYNDTKINIIDTPGHSDFG----GEVERILNM--VEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (681)
Q Consensus 147 ~~~~~~~i~iiDTPGh~df~----~e~~~~l~~--aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~ 217 (681)
+...++.+.||||||..... .++...... .|-++||+|+..|-.. ....+...+.--+--+++||+|..
T Consensus 178 ~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCC
Confidence 01136799999999975433 344443332 5679999999876332 222233222223567889999964
No 385
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.80 E-value=5.6e-05 Score=72.10 Aligned_cols=83 Identities=13% Similarity=0.112 Sum_probs=56.5
Q ss_pred ceEEEEeeCCCCCchhhHHHH-HHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceEEEeecccCC
Q 005713 177 EGVLLVVDSVEGPMPQTRFVL-KKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGK 255 (681)
Q Consensus 177 D~~llVvDa~~g~~~qt~~~l-~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~ 255 (681)
|.+|+|+|+.++.......+. ..+...++|+|+|+||+|+... +. ..+....+... ...+++++||++|.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~--~~-~~~~~~~~~~~------~~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPK--EV-LRKWLAYLRHS------YPTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCH--HH-HHHHHHHHHhh------CCceEEEEeccCCc
Confidence 789999999886655555444 4556678999999999998532 11 11111112111 12468999999999
Q ss_pred CCCCCCCCCCCcchhHHHHHhhC
Q 005713 256 AGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 256 ~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
++..|++.+.+.+
T Consensus 72 ----------gi~~L~~~i~~~~ 84 (155)
T cd01849 72 ----------GIEKKESAFTKQT 84 (155)
T ss_pred ----------ChhhHHHHHHHHh
Confidence 8899999887654
No 386
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.71 E-value=7.5e-05 Score=74.28 Aligned_cols=124 Identities=22% Similarity=0.289 Sum_probs=67.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccch---------hhcccceeEEeeee-------------EE
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND---------LERERGITILSKNT-------------SI 147 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~---------~E~erGiTi~~~~~-------------~~ 147 (681)
+.|+++|+.|+||||.+-.|....... ...+.--.+|... .-+.-|+.+..... .+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 568999999999999999887653322 1111111122211 01111333322110 01
Q ss_pred eeCCeEEEEEeCCCccchh----HHHHHHHhh--cceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCC
Q 005713 148 TYNDTKINIIDTPGHSDFG----GEVERILNM--VEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (681)
Q Consensus 148 ~~~~~~i~iiDTPGh~df~----~e~~~~l~~--aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~ 217 (681)
..+++.+.||||||...+. .++...+.. .+-++||+|++.+.. ............++. =++++|+|..
T Consensus 80 ~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~-~~~~~~~~~~~~~~~-~lIlTKlDet 153 (196)
T PF00448_consen 80 RKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE-DLEQALAFYEAFGID-GLILTKLDET 153 (196)
T ss_dssp HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH-HHHHHHHHHHHSSTC-EEEEESTTSS
T ss_pred hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH-HHHHHHHHhhcccCc-eEEEEeecCC
Confidence 1245789999999975543 333333333 567999999987643 222444444444555 4559999954
No 387
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.71 E-value=6.3e-05 Score=71.75 Aligned_cols=57 Identities=26% Similarity=0.469 Sum_probs=40.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCc
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh 162 (681)
...+++++|.+++|||||+|+|+....... ....|+|.......+ +..++++||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~---------------~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKV---------------GNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccc---------------cCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 467899999999999999999997543211 112356665544433 256999999994
No 388
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.69 E-value=7.9e-05 Score=72.34 Aligned_cols=57 Identities=23% Similarity=0.283 Sum_probs=40.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCc
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh 162 (681)
...+++++|.+++|||||+++|+......... ..|+|.......+. ..+.+|||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~---------------~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGN---------------KPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecC---------------CCCEEeeeEEEEec---CCEEEEECCCC
Confidence 34689999999999999999999754421111 11556555444443 56899999996
No 389
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.68 E-value=5.6e-05 Score=74.64 Aligned_cols=63 Identities=21% Similarity=0.279 Sum_probs=41.3
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCcccc-ccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRD-NQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~-~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh 162 (681)
..+++++|.+|+|||||+|+|+........ ... .......|+|.......+.. .+.||||||.
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~--------~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDL--------LTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccc--------cccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence 467999999999999999999975431110 000 01112337787766555532 5799999994
No 390
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.67 E-value=0.00037 Score=72.95 Aligned_cols=147 Identities=18% Similarity=0.311 Sum_probs=78.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccch-----h------hcccceeEEeeee-----E-----
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND-----L------ERERGITILSKNT-----S----- 146 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~-----~------E~erGiTi~~~~~-----~----- 146 (681)
+.+.|+++|++|+||||++..|....... ...+ .+.|.+. . -..+|+.+..... .
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V--~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSV--LLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEE--EEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 45789999999999999998887543211 1111 1111110 1 1233444321100 0
Q ss_pred ---EeeCCeEEEEEeCCCccchh----HHHHHHHh--------hcceEEEEeeCCCCCchhhHHHHHHHH-HcCCEEEEE
Q 005713 147 ---ITYNDTKINIIDTPGHSDFG----GEVERILN--------MVEGVLLVVDSVEGPMPQTRFVLKKAL-EFGHAVVVV 210 (681)
Q Consensus 147 ---~~~~~~~i~iiDTPGh~df~----~e~~~~l~--------~aD~~llVvDa~~g~~~qt~~~l~~~~-~~gip~ivv 210 (681)
....++.+.||||||..... .++....+ .+|.++||+|+..+- .+........ ..+ ..-++
T Consensus 147 l~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~f~~~~~-~~g~I 223 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQAKVFNEAVG-LTGII 223 (272)
T ss_pred HHHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHHHHHHHhhCC-CCEEE
Confidence 01256899999999975433 22322222 378999999997542 2222222222 223 35778
Q ss_pred EeecCCCCCCcccchhhHHHHHHHhhcccccCCceEEEeecccCC
Q 005713 211 VNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGK 255 (681)
Q Consensus 211 iNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~ 255 (681)
+||+|... +.-.. .+..... ..|+.|++ +|.
T Consensus 224 lTKlDe~~-~~G~~----l~~~~~~-------~~Pi~~~~--~Gq 254 (272)
T TIGR00064 224 LTKLDGTA-KGGII----LSIAYEL-------KLPIKFIG--VGE 254 (272)
T ss_pred EEccCCCC-CccHH----HHHHHHH-------CcCEEEEe--CCC
Confidence 99999642 22222 2222221 36888887 566
No 391
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.65 E-value=0.00014 Score=73.84 Aligned_cols=89 Identities=12% Similarity=0.120 Sum_probs=57.3
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhh--cCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQ--AKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~--~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d 164 (681)
.++..|+|+|..++|||||+|+|++. .+..... .....+||.+....... ..+..+.++||||..+
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~-----------~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~ 72 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDT-----------SQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDG 72 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCC-----------CCCCccceEEEeccccC-CCcceEEEEecCCcCc
Confidence 35677999999999999999999987 3322111 01122465554433222 2468899999999754
Q ss_pred hh------HHHHHHHhh--cceEEEEeeCCC
Q 005713 165 FG------GEVERILNM--VEGVLLVVDSVE 187 (681)
Q Consensus 165 f~------~e~~~~l~~--aD~~llVvDa~~ 187 (681)
.. .....++.. +|.+|+.++...
T Consensus 73 ~~~~~~~~~~~~~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 73 RERGEFEDDARLFALATLLSSVLIYNSWETI 103 (224)
T ss_pred cccCchhhhhHHHHHHHHHhCEEEEeccCcc
Confidence 32 222344444 898888888654
No 392
>PRK12288 GTPase RsgA; Reviewed
Probab=97.65 E-value=6.1e-05 Score=81.38 Aligned_cols=65 Identities=23% Similarity=0.425 Sum_probs=42.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
.++++|.+|+|||||+|+|+........ .+ +....+.|.+|.....+.+..++ .|+||||...|.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~--~i------s~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVG--DV------SDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeec--cc------cCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 4899999999999999999975332111 00 11123344566665555554333 499999998873
No 393
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.64 E-value=0.00019 Score=77.53 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=65.3
Q ss_pred cceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCC-----------CchhhHHHHHHHHH--
Q 005713 136 RGITILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-----------PMPQTRFVLKKALE-- 202 (681)
Q Consensus 136 rGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g-----------~~~qt~~~l~~~~~-- 202 (681)
|-.|.......+.+++..+.+||..|+..+...|..++..++++|+|+|.++- -+..+...+..+..
T Consensus 168 r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~ 247 (342)
T smart00275 168 RVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR 247 (342)
T ss_pred eCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc
Confidence 34455666777888999999999999999999999999999999999998862 23344555555544
Q ss_pred --cCCEEEEEEeecCCC
Q 005713 203 --FGHAVVVVVNKIDRP 217 (681)
Q Consensus 203 --~gip~ivviNKiD~~ 217 (681)
.+.|+++++||.|+.
T Consensus 248 ~~~~~piil~~NK~D~~ 264 (342)
T smart00275 248 WFANTSIILFLNKIDLF 264 (342)
T ss_pred cccCCcEEEEEecHHhH
Confidence 268999999999975
No 394
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.64 E-value=0.00021 Score=76.54 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=63.7
Q ss_pred ceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCC-----------CchhhHHHHHHHHH---
Q 005713 137 GITILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-----------PMPQTRFVLKKALE--- 202 (681)
Q Consensus 137 GiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g-----------~~~qt~~~l~~~~~--- 202 (681)
.-|.......+.+++..+.+||++|+......|..++..++++|+|+|.++- -+......+..+..
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~ 225 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW 225 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc
Confidence 3455556677888999999999999999999999999999999999998762 22344444444443
Q ss_pred -cCCEEEEEEeecCCC
Q 005713 203 -FGHAVVVVVNKIDRP 217 (681)
Q Consensus 203 -~gip~ivviNKiD~~ 217 (681)
.+.|+++++||.|+.
T Consensus 226 ~~~~pill~~NK~D~f 241 (317)
T cd00066 226 FANTSIILFLNKKDLF 241 (317)
T ss_pred ccCCCEEEEccChHHH
Confidence 368999999999964
No 395
>PRK12289 GTPase RsgA; Reviewed
Probab=97.62 E-value=0.00014 Score=78.73 Aligned_cols=84 Identities=26% Similarity=0.288 Sum_probs=58.9
Q ss_pred HHhhcceEEEEeeCCCCC-ch-hhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceEEEe
Q 005713 172 ILNMVEGVLLVVDSVEGP-MP-QTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYA 249 (681)
Q Consensus 172 ~l~~aD~~llVvDa~~g~-~~-qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~ 249 (681)
++..+|.+++|+|+.+.. .. ....++..+...++|+++|+||+|+.... + .....+.+.. ..++++++
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~--~-~~~~~~~~~~-------~g~~v~~i 155 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSPT--E-QQQWQDRLQQ-------WGYQPLFI 155 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCChH--H-HHHHHHHHHh-------cCCeEEEE
Confidence 478899999999998643 22 33556666667799999999999986321 1 1222222222 24579999
Q ss_pred ecccCCCCCCCCCCCCCcchhHHHHH
Q 005713 250 SGIQGKAGLSPDNLADDLGPLFESIM 275 (681)
Q Consensus 250 SA~~G~~~~~~~~~~~gi~~Ll~~I~ 275 (681)
||++|. |+..|++.+.
T Consensus 156 SA~tg~----------GI~eL~~~L~ 171 (352)
T PRK12289 156 SVETGI----------GLEALLEQLR 171 (352)
T ss_pred EcCCCC----------CHHHHhhhhc
Confidence 999998 8888887764
No 396
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.00074 Score=75.87 Aligned_cols=127 Identities=21% Similarity=0.220 Sum_probs=65.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccch---hh------cccceeEEeeeeE-------EeeCCe
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND---LE------RERGITILSKNTS-------ITYNDT 152 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~---~E------~erGiTi~~~~~~-------~~~~~~ 152 (681)
-..|+|+|..|+||||++..|............+.---+|... .| +.-|+.+...... -.+.++
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 4689999999999999999887532110000011000011111 00 1112222211100 012467
Q ss_pred EEEEEeCCCccchhHHHHH---HHh--hcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCC
Q 005713 153 KINIIDTPGHSDFGGEVER---ILN--MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (681)
Q Consensus 153 ~i~iiDTPGh~df~~e~~~---~l~--~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~ 217 (681)
.+.||||||.......... .+. .....+||+++..+... ..+.++..... .+.-+|+||+|..
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~D-l~eii~~f~~~-~~~gvILTKlDEt 497 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSD-LDEVVRRFAHA-KPQGVVLTKLDET 497 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhH-HHHHHHHHHhh-CCeEEEEecCcCc
Confidence 8999999997543322111 111 12356888888764322 22344444333 3567899999963
No 397
>PRK14974 cell division protein FtsY; Provisional
Probab=97.57 E-value=0.00045 Score=74.19 Aligned_cols=151 Identities=16% Similarity=0.185 Sum_probs=77.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccc--------h-hhcccceeEEeeee-------------
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSN--------D-LERERGITILSKNT------------- 145 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~--------~-~E~erGiTi~~~~~------------- 145 (681)
+.+.|+++|.+|+||||++..|........ ..+.---.|.. . .-..-|+.+.....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g--~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNG--FSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC--CeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHH
Confidence 356799999999999998887765321100 01100001110 0 01111332211110
Q ss_pred EEeeCCeEEEEEeCCCccc----hhHHHHHHHh--hcceEEEEeeCCCCCchhhHHHHHHHH-HcCCEEEEEEeecCCCC
Q 005713 146 SITYNDTKINIIDTPGHSD----FGGEVERILN--MVEGVLLVVDSVEGPMPQTRFVLKKAL-EFGHAVVVVVNKIDRPS 218 (681)
Q Consensus 146 ~~~~~~~~i~iiDTPGh~d----f~~e~~~~l~--~aD~~llVvDa~~g~~~qt~~~l~~~~-~~gip~ivviNKiD~~~ 218 (681)
.....++.+.||||+|... +..++....+ ..|.++||+|+..|- ......+... ..++ --+++||+|...
T Consensus 217 ~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~~~~~-~giIlTKlD~~~ 293 (336)
T PRK14974 217 HAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNEAVGI-DGVILTKVDADA 293 (336)
T ss_pred HHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHhcCCC-CEEEEeeecCCC
Confidence 0112356799999999753 3344444333 368899999997652 2222222222 1233 567799999742
Q ss_pred CCcccchhhHHHHHHHhhcccccCCceEEEeecccCCCC
Q 005713 219 ARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAG 257 (681)
Q Consensus 219 ~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~ 257 (681)
..-..++ .... ...|+.|++ +|.++
T Consensus 294 -~~G~~ls----~~~~-------~~~Pi~~i~--~Gq~v 318 (336)
T PRK14974 294 -KGGAALS----IAYV-------IGKPILFLG--VGQGY 318 (336)
T ss_pred -CccHHHH----HHHH-------HCcCEEEEe--CCCCh
Confidence 2222222 2211 245899987 57644
No 398
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.56 E-value=0.00032 Score=67.31 Aligned_cols=122 Identities=19% Similarity=0.173 Sum_probs=62.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccce----eeeeeccchhhccc--ceeEEeeeeEEe----------------
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTV----KERIMDSNDLERER--GITILSKNTSIT---------------- 148 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~----~~~~~D~~~~E~er--GiTi~~~~~~~~---------------- 148 (681)
-+.++|..|+|||||+++++....... .... ...-.|........ -+.+......+.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~~~~-~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~~ 80 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQHGRK-IAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERL 80 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcccCCc-EEEEecCCCccchhHHHHhCCCceEEEeCCCEeEeeCchhHHHHHHHHHHHH
Confidence 367999999999999999987632110 0000 01112222221110 111111111110
Q ss_pred ---eCCeEEEEEeCCCccchhHHHHH--------HHhhcceEEEEeeCCCCCchh--hHHHHHHHHHcCCEEEEEEeecC
Q 005713 149 ---YNDTKINIIDTPGHSDFGGEVER--------ILNMVEGVLLVVDSVEGPMPQ--TRFVLKKALEFGHAVVVVVNKID 215 (681)
Q Consensus 149 ---~~~~~i~iiDTPGh~df~~e~~~--------~l~~aD~~llVvDa~~g~~~q--t~~~l~~~~~~gip~ivviNKiD 215 (681)
.....+.++||||..+-...... ..-.+|.++.++|+....... ......++. --=++++||+|
T Consensus 81 ~~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~---~ad~ivlnk~d 157 (158)
T cd03112 81 DAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIA---FADRILLNKTD 157 (158)
T ss_pred HhccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHH---HCCEEEEeccc
Confidence 12357789999998764433332 223478899999986532211 111122222 22477999999
Q ss_pred C
Q 005713 216 R 216 (681)
Q Consensus 216 ~ 216 (681)
+
T Consensus 158 l 158 (158)
T cd03112 158 L 158 (158)
T ss_pred C
Confidence 5
No 399
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.56 E-value=0.00044 Score=77.38 Aligned_cols=58 Identities=26% Similarity=0.387 Sum_probs=38.5
Q ss_pred CCEEEEEEeecCCCC---C-------CcccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHH
Q 005713 204 GHAVVVVVNKIDRPS---A-------RPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFES 273 (681)
Q Consensus 204 gip~ivviNKiD~~~---~-------~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~ 273 (681)
|+|++||++|.|... . .++.+..-++.++...++ ..||+|.+... ++..|+..
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGA-------sL~yts~~~~~----------n~~~L~~y 258 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGA-------SLIYTSVKEEK----------NLDLLYKY 258 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCC-------eEEEeeccccc----------cHHHHHHH
Confidence 589999999999642 1 122333334444444444 48999998876 77777878
Q ss_pred HHhhC
Q 005713 274 IMRCI 278 (681)
Q Consensus 274 I~~~l 278 (681)
|...+
T Consensus 259 i~h~l 263 (472)
T PF05783_consen 259 ILHRL 263 (472)
T ss_pred HHHHh
Confidence 77665
No 400
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.55 E-value=7.9e-05 Score=77.66 Aligned_cols=67 Identities=27% Similarity=0.382 Sum_probs=45.6
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
-+..+++|++|+|||||+|+|...... .-+.+ +....+.|.+|.....+.+..++ .|+||||...|.
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~~--~t~eI------S~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELNQ--KTGEI------SEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCchhhh--hhhhh------cccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 356889999999999999999863221 11111 22334556677777777665444 589999998773
No 401
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.54 E-value=7.8e-05 Score=81.23 Aligned_cols=63 Identities=24% Similarity=0.328 Sum_probs=41.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
++++++|.+|+|||||+|+|+..........+ .....|+|....... . +..+.++||||....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~----------~s~~pgtT~~~~~~~--~-~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVIT----------TSPFPGTTLDLIEIP--L-DDGHSLYDTPGIINS 217 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceee----------ecCCCCeEeeEEEEE--e-CCCCEEEECCCCCCh
Confidence 68999999999999999999986432111001 011237776654333 2 234679999998654
No 402
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.53 E-value=0.00024 Score=74.55 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=39.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCc
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh 162 (681)
...+++++|.+|+|||||+|+|++........ ..|+|.......+ . ..+.|+||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~---------------~~g~T~~~~~~~~--~-~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN---------------RPGVTKGQQWIKL--S-DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCC---------------CCCeecceEEEEe--C-CCEEEEECCCc
Confidence 35679999999999999999998653221111 1256655443333 2 36899999998
No 403
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.52 E-value=0.00024 Score=77.38 Aligned_cols=100 Identities=19% Similarity=0.154 Sum_probs=65.6
Q ss_pred ccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCc--ccchhhHHHHHHHhhccc
Q 005713 162 HSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARP--DYVINSTFELFIELNATD 239 (681)
Q Consensus 162 h~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~--~~~~~ei~~~~~~l~~~~ 239 (681)
.++|...+..+...+|.+++|+|+.+-......++.+.+ .+.|+++|+||+|+..... ++..+.+++.+.+.+..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~- 126 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLK- 126 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCC-
Confidence 568888888888899999999999775433333333322 2689999999999864321 12222222223322221
Q ss_pred ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 240 ~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
...++++||++|+ |+.+|++.+.++
T Consensus 127 ---~~~i~~vSAk~g~----------gv~eL~~~l~~~ 151 (360)
T TIGR03597 127 ---PVDIILVSAKKGN----------GIDELLDKIKKA 151 (360)
T ss_pred ---cCcEEEecCCCCC----------CHHHHHHHHHHH
Confidence 1138999999999 888888888664
No 404
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.52 E-value=0.00019 Score=75.76 Aligned_cols=59 Identities=22% Similarity=0.277 Sum_probs=41.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d 164 (681)
...+++++|.+|+|||||+|+|++........ ..|+|...... .. +..+.||||||...
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~---------------~~g~T~~~~~~--~~-~~~~~l~DtPGi~~ 178 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN---------------RPGVTKAQQWI--KL-GKGLELLDTPGILW 178 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCC---------------CCCeEEEEEEE--Ee-CCcEEEEECCCcCC
Confidence 45689999999999999999998754322111 12667665432 22 34689999999743
No 405
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=97.52 E-value=0.00057 Score=59.61 Aligned_cols=77 Identities=14% Similarity=0.242 Sum_probs=63.5
Q ss_pred EEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEeccccc-cc
Q 005713 290 QMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDI-QI 368 (681)
Q Consensus 290 ~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~-~~ 368 (681)
.+.|.....+.+.|.++..-|.+|+|++||.+...... .||+.|+...| .++++|.||+.|-|.|++++ ..
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~-----gkVr~l~d~~g---~~v~~a~Ps~~V~I~G~~~~P~a 73 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGTTY-----GKVRAMFDENG---KRVKEAGPSTPVEILGLKGVPQA 73 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcccc-----cEEEEEECCCC---CCCCEECCCCcEEEcCCCCCCCC
Confidence 45677888899999999999999999999999886443 48999975544 67999999999999999876 55
Q ss_pred CCeeec
Q 005713 369 GETIAD 374 (681)
Q Consensus 369 Gdtl~~ 374 (681)
||.+..
T Consensus 74 Gd~~~~ 79 (95)
T cd03702 74 GDKFLV 79 (95)
T ss_pred CCEEEE
Confidence 877653
No 406
>PRK00098 GTPase RsgA; Reviewed
Probab=97.52 E-value=0.0002 Score=76.04 Aligned_cols=84 Identities=21% Similarity=0.215 Sum_probs=57.2
Q ss_pred HHhhcceEEEEeeCCCCCc-hh-hHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceEEEe
Q 005713 172 ILNMVEGVLLVVDSVEGPM-PQ-TRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYA 249 (681)
Q Consensus 172 ~l~~aD~~llVvDa~~g~~-~q-t~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~ 249 (681)
.+..+|.+++|+|+.+... .. ...++..+...++|+++|+||+|+.+.. ....+....+.. ..++++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~-------~g~~v~~v 147 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDDL--EEARELLALYRA-------IGYDVLEL 147 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCCH--HHHHHHHHHHHH-------CCCeEEEE
Confidence 5788999999999976432 22 2455666677899999999999985321 112222222222 23689999
Q ss_pred ecccCCCCCCCCCCCCCcchhHHHH
Q 005713 250 SGIQGKAGLSPDNLADDLGPLFESI 274 (681)
Q Consensus 250 SA~~G~~~~~~~~~~~gi~~Ll~~I 274 (681)
||++|. |+..|++.+
T Consensus 148 SA~~g~----------gi~~L~~~l 162 (298)
T PRK00098 148 SAKEGE----------GLDELKPLL 162 (298)
T ss_pred eCCCCc----------cHHHHHhhc
Confidence 999998 887777765
No 407
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.51 E-value=0.00013 Score=75.31 Aligned_cols=64 Identities=23% Similarity=0.282 Sum_probs=41.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
..++++|++|+|||||+|+|+........ .+ +....+.+.+|.......+ .+ ..|+||||...|
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~--~i------~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVN--DI------SSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhcccc--ce------eccCCCCCCcCCceEEEEc--CC--cEEEeCCCcccc
Confidence 57899999999999999999975322110 00 0112233456666655555 22 379999998776
No 408
>PRK12289 GTPase RsgA; Reviewed
Probab=97.44 E-value=0.00015 Score=78.51 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=40.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
.++|+|.+|+|||||+|+|+......... + +....+.|.+|.....+.+..+ ..|+||||...|.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~--v------s~~~~rGrHTT~~~~l~~l~~g---~~liDTPG~~~~~ 238 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGK--V------SGKLGRGRHTTRHVELFELPNG---GLLADTPGFNQPD 238 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcccccccc--c------cCCCCCCCCcCceeEEEECCCC---cEEEeCCCccccc
Confidence 48999999999999999999654321110 0 0112234446665544444322 2799999997763
No 409
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.42 E-value=0.00028 Score=67.23 Aligned_cols=58 Identities=19% Similarity=0.335 Sum_probs=37.6
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCc
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh 162 (681)
....+++++|.+++|||||+++|.......... ..|.|.... +...+..+.||||||.
T Consensus 99 ~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~---------------~~~~t~~~~---~~~~~~~~~~~DtpGi 156 (156)
T cd01859 99 GKEGKVGVVGYPNVGKSSIINALKGRHSASTSP---------------SPGYTKGEQ---LVKITSKIYLLDTPGV 156 (156)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccCC---------------CCCeeeeeE---EEEcCCCEEEEECcCC
Confidence 346789999999999999999998543211110 114443322 2222347999999994
No 410
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=97.42 E-value=0.0012 Score=55.52 Aligned_cols=75 Identities=15% Similarity=0.259 Sum_probs=50.4
Q ss_pred ceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEe--cccc
Q 005713 288 ALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC--GIDD 365 (681)
Q Consensus 288 p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~--gl~~ 365 (681)
|-.+.|...+.-...+ +..|+|..|+|++|..| .+.. ..+|.+| ..+++++++|.+||-||++ |..+
T Consensus 4 p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l----~G~~--iG~I~sI----e~~~k~v~~A~~G~eVai~Ieg~~~ 72 (81)
T PF14578_consen 4 PGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL----DGRK--IGRIKSI----EDNGKNVDEAKKGDEVAISIEGPTQ 72 (81)
T ss_dssp SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE----CSSC--EEEEEEE----EETTEEESEEETT-EEEEEEET--T
T ss_pred ceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc----CCEE--EEEEEEe----EECCcCccccCCCCEEEEEEeCCcc
Confidence 3344444444444456 78889999999999998 3333 3678888 5677899999999999994 6557
Q ss_pred cccCCeee
Q 005713 366 IQIGETIA 373 (681)
Q Consensus 366 ~~~Gdtl~ 373 (681)
+.-||+|.
T Consensus 73 i~eGDiLy 80 (81)
T PF14578_consen 73 IKEGDILY 80 (81)
T ss_dssp B-TT-EEE
T ss_pred CCCCCEEe
Confidence 88898873
No 411
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.40 E-value=0.0012 Score=63.93 Aligned_cols=64 Identities=19% Similarity=0.192 Sum_probs=50.2
Q ss_pred EEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCE-EEEEEeecCCCC
Q 005713 153 KINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPS 218 (681)
Q Consensus 153 ~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip-~ivviNKiD~~~ 218 (681)
.+.|||||+..+. ....++..+|.+|+++++.......+...++.+...+.+ ..+|+|++|...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence 7999999986544 456778999999999998877666777777777776654 678999998643
No 412
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.39 E-value=0.00052 Score=74.21 Aligned_cols=82 Identities=20% Similarity=0.169 Sum_probs=56.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcC-ccccccceeeeeeccchhhcccceeEEeeeeEEee-----------------CC
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAK-VFRDNQTVKERIMDSNDLERERGITILSKNTSITY-----------------ND 151 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~-~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-----------------~~ 151 (681)
.+++|+|.+++|||||+++|..... ....... .|+......+.. ..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypf----------------tTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~ 66 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPF----------------TTIEPNAGVVNPSDPRLDLLAIYIKPEKVPP 66 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCC----------------CCCCCceeEEEechhHHHHHHHHhCCcCcCC
Confidence 5799999999999999999988755 3222111 111111111111 12
Q ss_pred eEEEEEeCCCccc-------hhHHHHHHHhhcceEEEEeeCCC
Q 005713 152 TKINIIDTPGHSD-------FGGEVERILNMVEGVLLVVDSVE 187 (681)
Q Consensus 152 ~~i~iiDTPGh~d-------f~~e~~~~l~~aD~~llVvDa~~ 187 (681)
..+.++|.||... ........++.+|+++.|||+.+
T Consensus 67 a~i~~~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 67 TTTEFVDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred ceEEEEeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 3688999999643 45577788999999999999875
No 413
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=97.39 E-value=0.0011 Score=59.04 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=67.2
Q ss_pred EEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeecc-------ceeecceec--CCCEEEE
Q 005713 290 QMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKF-------SRVSAEIVA--AGDICAV 360 (681)
Q Consensus 290 ~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~-------~~~~v~~a~--aGdiv~i 360 (681)
.+.|.....+++.|.++..-|++|+|++||.|.+....+.. ..||+.|+...++ +...++++. +|--|..
T Consensus 2 ~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gpi-~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gvkI~~ 80 (110)
T cd03703 2 QGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGPI-VTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGVKILA 80 (110)
T ss_pred cEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCCc-eEEEeEecCCCCchhhccccccceeeEEecCCCcEEEe
Confidence 45677888899999999999999999999999998887653 4589999887775 234666766 7777777
Q ss_pred ecccccccCCeeec
Q 005713 361 CGIDDIQIGETIAD 374 (681)
Q Consensus 361 ~gl~~~~~Gdtl~~ 374 (681)
.||+++..|+.+.-
T Consensus 81 ~gL~~v~aG~~~~v 94 (110)
T cd03703 81 PDLEKAIAGSPLLV 94 (110)
T ss_pred CCCccccCCCEEEE
Confidence 88998877887643
No 414
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.39 E-value=0.00024 Score=75.08 Aligned_cols=66 Identities=27% Similarity=0.436 Sum_probs=42.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
..++++|++|+|||||+|.|+........ .+ +....+.+++|.......+... ..++||||..+|.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g--~v------~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATG--EI------SEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhcccc--ce------eccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 67999999999999999999875432111 11 0111233446665554444333 3699999998773
No 415
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.38 E-value=0.00077 Score=72.12 Aligned_cols=143 Identities=19% Similarity=0.269 Sum_probs=78.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCcccccccee----eeeeccchhhccc--ceeEEeeeeEEeeC-----------
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK----ERIMDSNDLERER--GITILSKNTSITYN----------- 150 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~----~~~~D~~~~E~er--GiTi~~~~~~~~~~----------- 150 (681)
+++-..|.|.-|+|||||+++|+...... +..-+. +.-+|..-.+... =.++......+...
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~-riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~ 81 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGY-KIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCC-cccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHH
Confidence 46778899999999999999999753211 101011 1122322222111 12222233333321
Q ss_pred --------CeEEEEEeCCCccchhHHHHHHHh--------hcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeec
Q 005713 151 --------DTKINIIDTPGHSDFGGEVERILN--------MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKI 214 (681)
Q Consensus 151 --------~~~i~iiDTPGh~df~~e~~~~l~--------~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKi 214 (681)
.....+|.|.|..+-.......+. ..|+++.|||+........... ....+...-=+|++||+
T Consensus 82 ~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~-~~~~Qi~~AD~IvlnK~ 160 (318)
T PRK11537 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFT-IAQSQVGYADRILLTKT 160 (318)
T ss_pred HHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccH-HHHHHHHhCCEEEEecc
Confidence 245789999999886655544322 2488999999976332111110 01112222358899999
Q ss_pred CCCCCCcccchhhHHHHHHHhhc
Q 005713 215 DRPSARPDYVINSTFELFIELNA 237 (681)
Q Consensus 215 D~~~~~~~~~~~ei~~~~~~l~~ 237 (681)
|+.... +++.+.+..+..
T Consensus 161 Dl~~~~-----~~~~~~l~~lnp 178 (318)
T PRK11537 161 DVAGEA-----EKLRERLARINA 178 (318)
T ss_pred ccCCHH-----HHHHHHHHHhCC
Confidence 987532 455566655544
No 416
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.38 E-value=0.00036 Score=73.71 Aligned_cols=84 Identities=20% Similarity=0.125 Sum_probs=57.5
Q ss_pred HHHhhcceEEEEeeCCCCC-c-hhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceEEE
Q 005713 171 RILNMVEGVLLVVDSVEGP-M-PQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIY 248 (681)
Q Consensus 171 ~~l~~aD~~llVvDa~~g~-~-~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~ 248 (681)
..+..+|.+++|+|+.+.. . .....++..+...++|+++|+||+|+.... +. ......+. ...+++++
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~--~~-~~~~~~~~-------~~g~~v~~ 143 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDE--EE-ELELVEAL-------ALGYPVLA 143 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChH--HH-HHHHHHHH-------hCCCeEEE
Confidence 3578899999999998765 2 233446666677899999999999986431 10 01111111 13468999
Q ss_pred eecccCCCCCCCCCCCCCcchhHHHH
Q 005713 249 ASGIQGKAGLSPDNLADDLGPLFESI 274 (681)
Q Consensus 249 ~SA~~G~~~~~~~~~~~gi~~Ll~~I 274 (681)
+||++|. |++.|++.+
T Consensus 144 vSA~~g~----------gi~~L~~~L 159 (287)
T cd01854 144 VSAKTGE----------GLDELREYL 159 (287)
T ss_pred EECCCCc----------cHHHHHhhh
Confidence 9999998 777776655
No 417
>PRK12288 GTPase RsgA; Reviewed
Probab=97.37 E-value=0.00055 Score=74.04 Aligned_cols=88 Identities=16% Similarity=0.251 Sum_probs=58.9
Q ss_pred HHhhcceEEEEeeCCCCCchhh-HHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceEEEee
Q 005713 172 ILNMVEGVLLVVDSVEGPMPQT-RFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYAS 250 (681)
Q Consensus 172 ~l~~aD~~llVvDa~~g~~~qt-~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~S 250 (681)
....+|.+++|++......... ..++..+...++|+++|+||+|+..........+....+.. ..++++++|
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~-------~g~~v~~vS 189 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRN-------IGYRVLMVS 189 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHh-------CCCeEEEEe
Confidence 3567899999999765444332 34455666778999999999999643211112222222222 346899999
Q ss_pred cccCCCCCCCCCCCCCcchhHHHHHh
Q 005713 251 GIQGKAGLSPDNLADDLGPLFESIMR 276 (681)
Q Consensus 251 A~~G~~~~~~~~~~~gi~~Ll~~I~~ 276 (681)
|++|. |+..|++.+..
T Consensus 190 A~tg~----------GideL~~~L~~ 205 (347)
T PRK12288 190 SHTGE----------GLEELEAALTG 205 (347)
T ss_pred CCCCc----------CHHHHHHHHhh
Confidence 99998 88888888754
No 418
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.37 E-value=0.0019 Score=70.96 Aligned_cols=134 Identities=14% Similarity=0.274 Sum_probs=85.5
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccc------ccee----------eeeeccc------h------------
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN------QTVK----------ERIMDSN------D------------ 131 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~------~~~~----------~~~~D~~------~------------ 131 (681)
.++.++|+++|...+||||.++.+.....-.+.. ..+. ..+-|+. +
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E 384 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE 384 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence 4567889999999999999999887542211111 1111 1111111 1
Q ss_pred ----hhcccceeEEeeeeEEeeCC---eEEEEEeCCCcc-------------chhHHHHHHHhhcceEEEEee-CC-CCC
Q 005713 132 ----LERERGITILSKNTSITYND---TKINIIDTPGHS-------------DFGGEVERILNMVEGVLLVVD-SV-EGP 189 (681)
Q Consensus 132 ----~E~erGiTi~~~~~~~~~~~---~~i~iiDTPGh~-------------df~~e~~~~l~~aD~~llVvD-a~-~g~ 189 (681)
..-..|.|+....+++..++ .+..++|.||.. +.......++...+++||||- ++ +..
T Consensus 385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAE 464 (980)
T KOG0447|consen 385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAE 464 (980)
T ss_pred HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchh
Confidence 11234778888888877766 478899999962 223444556777888888875 21 222
Q ss_pred chhhHHHHHHHHHcCCEEEEEEeecCCCCC
Q 005713 190 MPQTRFVLKKALEFGHAVVVVVNKIDRPSA 219 (681)
Q Consensus 190 ~~qt~~~l~~~~~~gip~ivviNKiD~~~~ 219 (681)
....-.+...+.-+|...|+|++|+|+.+.
T Consensus 465 RSnVTDLVsq~DP~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 465 RSIVTDLVSQMDPHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred hhhHHHHHHhcCCCCCeeEEEEeecchhhh
Confidence 223334556666779999999999999754
No 419
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.36 E-value=0.0019 Score=68.97 Aligned_cols=150 Identities=21% Similarity=0.203 Sum_probs=87.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeee----eecc-c--hhhcccceeEEeeeeEEe--------------
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKER----IMDS-N--DLERERGITILSKNTSIT-------------- 148 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~----~~D~-~--~~E~erGiTi~~~~~~~~-------------- 148 (681)
+...|-|--|+|||||+++|+.+....+ ..-..+. -.|. . ...-+.=..+.....++.
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~k-iAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~ 80 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKK-IAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLR 80 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCc-EEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHh
Confidence 4567889999999999999998755211 1101111 1221 1 111111223333344444
Q ss_pred -eCCeEEEEEeCCCccchhHHHHHHHh--------hcceEEEEeeCCCCCchhh---HHHHHHHHHcCCEEEEEEeecCC
Q 005713 149 -YNDTKINIIDTPGHSDFGGEVERILN--------MVEGVLLVVDSVEGPMPQT---RFVLKKALEFGHAVVVVVNKIDR 216 (681)
Q Consensus 149 -~~~~~i~iiDTPGh~df~~e~~~~l~--------~aD~~llVvDa~~g~~~qt---~~~l~~~~~~gip~ivviNKiD~ 216 (681)
.+.....+|.|-|.++-...+..... ..|++|-||||........ .....++ ..-=++++||.|+
T Consensus 81 ~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi---a~AD~ivlNK~Dl 157 (323)
T COG0523 81 RRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQL---AFADVIVLNKTDL 157 (323)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHH---HhCcEEEEecccC
Confidence 12356889999998876555544433 3578999999987433222 1222222 2235899999999
Q ss_pred CCCCcccchhhHHHHHHHhhcccccCCceEEEeec
Q 005713 217 PSARPDYVINSTFELFIELNATDEQCDFQAIYASG 251 (681)
Q Consensus 217 ~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA 251 (681)
.++. . ++.++..+.++.... +++.+|.
T Consensus 158 v~~~--~-l~~l~~~l~~lnp~A-----~i~~~~~ 184 (323)
T COG0523 158 VDAE--E-LEALEARLRKLNPRA-----RIIETSY 184 (323)
T ss_pred CCHH--H-HHHHHHHHHHhCCCC-----eEEEccc
Confidence 8754 2 666677777666543 5777765
No 420
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.33 E-value=0.0003 Score=75.45 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=41.6
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh 162 (681)
..+++++|-+++|||||+|+|++.......+- .|+|.......+.. .+.|+||||.
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~---------------PG~Tk~~q~i~~~~---~i~LlDtPGi 187 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNR---------------PGTTKGIQWIKLDD---GIYLLDTPGI 187 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeCCC---------------CceecceEEEEcCC---CeEEecCCCc
Confidence 45699999999999999999998766432221 27776655554443 4899999996
No 421
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.29 E-value=0.00048 Score=74.40 Aligned_cols=174 Identities=21% Similarity=0.288 Sum_probs=93.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCcccc-ccceeeeeeccchhhcccceeEEeeeeE--------EeeC---CeEEE
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRD-NQTVKERIMDSNDLERERGITILSKNTS--------ITYN---DTKIN 155 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~-~~~~~~~~~D~~~~E~erGiTi~~~~~~--------~~~~---~~~i~ 155 (681)
.-.-|+++|++-+|||||+.++........- ......|..|-.++.-. |-||....-. +... ..++.
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~a-GktImTTEPKFiP~eAv~I~l~~~~~~kVR 94 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGA-GKTIMTTEPKFIPNEAVEITLDDGIKVKVR 94 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCC-CCceeccCCcccCCcceEEEecCCceEEEE
Confidence 3455999999999999999999876543221 11112344444443322 4455433222 2222 35788
Q ss_pred EEeCCCcc--------c-----------------hhHHHHHH----Hhh-c-ceEEEEeeCCCCC------chhhHHHHH
Q 005713 156 IIDTPGHS--------D-----------------FGGEVERI----LNM-V-EGVLLVVDSVEGP------MPQTRFVLK 198 (681)
Q Consensus 156 iiDTPGh~--------d-----------------f~~e~~~~----l~~-a-D~~llVvDa~~g~------~~qt~~~l~ 198 (681)
++||-|+. + |....+-. ++. + =|+++--|++-+- .....+++.
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ 174 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIE 174 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHH
Confidence 99999851 1 21111111 111 1 1455555655332 234567888
Q ss_pred HHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 199 KALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 199 ~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.+++.|+|+++++|=.+-... ++. ++..++. +.-++|++++++.+-. ...+..+|+.++-.+
T Consensus 175 ELk~igKPFvillNs~~P~s~---et~----~L~~eL~---ekY~vpVlpvnc~~l~--------~~DI~~Il~~vLyEF 236 (492)
T PF09547_consen 175 ELKEIGKPFVILLNSTKPYSE---ETQ----ELAEELE---EKYDVPVLPVNCEQLR--------EEDITRILEEVLYEF 236 (492)
T ss_pred HHHHhCCCEEEEEeCCCCCCH---HHH----HHHHHHH---HHhCCcEEEeehHHcC--------HHHHHHHHHHHHhcC
Confidence 999999999999998873221 222 2222221 1224677777765432 124555566655555
Q ss_pred CC
Q 005713 279 PG 280 (681)
Q Consensus 279 p~ 280 (681)
|-
T Consensus 237 PV 238 (492)
T PF09547_consen 237 PV 238 (492)
T ss_pred Cc
Confidence 43
No 422
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.27 E-value=0.0013 Score=73.03 Aligned_cols=123 Identities=20% Similarity=0.295 Sum_probs=67.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccch---------hhcccceeEEeeeeE----------E-
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND---------LERERGITILSKNTS----------I- 147 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~---------~E~erGiTi~~~~~~----------~- 147 (681)
....|+++|.+|+||||++..|......... .+.--..|... .-..-|+.+...... +
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~--kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGL--KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCC--eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 4678999999999999999988754221100 11000011100 011123333221100 0
Q ss_pred eeCCeEEEEEeCCCccchhHH----HHHH--HhhcceEEEEeeCCCCCchhhHHHHHHHHHcC--CE-EEEEEeecCCC
Q 005713 148 TYNDTKINIIDTPGHSDFGGE----VERI--LNMVEGVLLVVDSVEGPMPQTRFVLKKALEFG--HA-VVVVVNKIDRP 217 (681)
Q Consensus 148 ~~~~~~i~iiDTPGh~df~~e----~~~~--l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~g--ip-~ivviNKiD~~ 217 (681)
...++.+.||||||....... +... +..+|.++||+|+..|- ..+..+..++ ++ .-+|+||+|..
T Consensus 172 ~~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq-----~av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 172 KFKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ-----QAKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred HhhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH-----HHHHHHHHHHhcCCCCEEEEecccCC
Confidence 012358999999997554322 2222 34578999999998762 2333444432 33 35778999953
No 423
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.25 E-value=0.0017 Score=60.81 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=66.3
Q ss_pred EEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHHHHH
Q 005713 94 IIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVERIL 173 (681)
Q Consensus 94 IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~~~l 173 (681)
.-+..|+||||+.-.|....... ... ..++|.+.. +-.+ .+.+.|+|||+..+ .....++
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~--~~~--~~~vd~D~~----~~~~----------~yd~VIiD~p~~~~--~~~~~~l 64 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKL--GKR--VLLLDADLG----LANL----------DYDYIIIDTGAGIS--DNVLDFF 64 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHC--CCc--EEEEECCCC----CCCC----------CCCEEEEECCCCCC--HHHHHHH
Confidence 34678999999988876543211 111 123333210 1111 17899999998643 3456789
Q ss_pred hhcceEEEEeeCCCCCchhhHHHHHHHHHc--CCEEEEEEeecCC
Q 005713 174 NMVEGVLLVVDSVEGPMPQTRFVLKKALEF--GHAVVVVVNKIDR 216 (681)
Q Consensus 174 ~~aD~~llVvDa~~g~~~qt~~~l~~~~~~--gip~ivviNKiD~ 216 (681)
..+|.+++|++........+...++.+... ..++.+|+|+++.
T Consensus 65 ~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 65 LAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred HhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 999999999998765555556666665443 3567899999974
No 424
>PRK01889 GTPase RsgA; Reviewed
Probab=97.25 E-value=0.00087 Score=72.94 Aligned_cols=82 Identities=21% Similarity=0.151 Sum_probs=59.0
Q ss_pred HhhcceEEEEeeCCCCCch-hhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceEEEeec
Q 005713 173 LNMVEGVLLVVDSVEGPMP-QTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASG 251 (681)
Q Consensus 173 l~~aD~~llVvDa~~g~~~-qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA 251 (681)
+..+|.+++|+++...+.. .....+..+...|+++++|+||+|+.+. .+... +.+..+ ...++++++|+
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~-~~~~~----~~~~~~-----~~g~~Vi~vSa 179 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED-AEEKI----AEVEAL-----APGVPVLAVSA 179 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC-HHHHH----HHHHHh-----CCCCcEEEEEC
Confidence 5678999999999876665 4556777788889999999999999643 11111 222222 23568999999
Q ss_pred ccCCCCCCCCCCCCCcchhHHHH
Q 005713 252 IQGKAGLSPDNLADDLGPLFESI 274 (681)
Q Consensus 252 ~~G~~~~~~~~~~~gi~~Ll~~I 274 (681)
++|. |+..|.+.+
T Consensus 180 ~~g~----------gl~~L~~~L 192 (356)
T PRK01889 180 LDGE----------GLDVLAAWL 192 (356)
T ss_pred CCCc----------cHHHHHHHh
Confidence 9998 777766655
No 425
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.24 E-value=0.00072 Score=67.69 Aligned_cols=62 Identities=31% Similarity=0.468 Sum_probs=49.4
Q ss_pred eEEEEEeC-CCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcC-CEEEEEEeecCC
Q 005713 152 TKINIIDT-PGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFG-HAVVVVVNKIDR 216 (681)
Q Consensus 152 ~~i~iiDT-PGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~g-ip~ivviNKiD~ 216 (681)
+.+.|+|| +|.+.|+. .....+|.+|+|+|.+..-..-.++.-+++.+.| .++.+|+||+|-
T Consensus 134 ~e~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 134 YEVVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred CcEEEEecccchhhhcc---ccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccc
Confidence 36788888 47777753 3567899999999988766666677778888889 889999999994
No 426
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.15 E-value=0.0029 Score=56.41 Aligned_cols=100 Identities=19% Similarity=0.148 Sum_probs=65.4
Q ss_pred EEEE-eCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHH
Q 005713 92 IAII-AHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (681)
Q Consensus 92 V~Ii-G~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~ 170 (681)
|+++ +..|+||||+.-.|........ .....+.|.+..- + ..+.|+|||+.... ...
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~---~~~~~l~d~d~~~---~--------------~D~IIiDtpp~~~~--~~~ 59 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEA---GRRVLLVDLDLQF---G--------------DDYVVVDLGRSLDE--VSL 59 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcC---CCcEEEEECCCCC---C--------------CCEEEEeCCCCcCH--HHH
Confidence 3444 4579999998887765422110 0112233333221 1 17899999987544 456
Q ss_pred HHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCC----EEEEEEee
Q 005713 171 RILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGH----AVVVVVNK 213 (681)
Q Consensus 171 ~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gi----p~ivviNK 213 (681)
.++..+|.+|++++....-...+...++.+.+.+. ++.+|+|+
T Consensus 60 ~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 60 AALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 68899999999999887766777777777776653 46688885
No 427
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.12 E-value=0.0036 Score=69.69 Aligned_cols=125 Identities=18% Similarity=0.241 Sum_probs=65.3
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchh-----h------cccceeEEeeeeE-------EeeC
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDL-----E------RERGITILSKNTS-------ITYN 150 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~-----E------~erGiTi~~~~~~-------~~~~ 150 (681)
.+.++++|+.|+||||++-.|............+ .++|.+.. | +..|+.+...... -...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V--~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKV--ALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeE--EEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC
Confidence 3579999999999999998886532200000111 11111110 0 0112222111110 0123
Q ss_pred CeEEEEEeCCCccchh----HHHHHHHhh---cceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCC
Q 005713 151 DTKINIIDTPGHSDFG----GEVERILNM---VEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (681)
Q Consensus 151 ~~~i~iiDTPGh~df~----~e~~~~l~~---aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~ 217 (681)
++.+.||||||...+. .++...+.. -+-+.||++++.+. ......+......++ --++++|+|..
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~-~~vI~TKlDet 370 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPL-DGLIFTKLDET 370 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCC-CEEEEeccccc
Confidence 5789999999985543 334444442 23578889986542 222233344433343 35789999963
No 428
>PRK13796 GTPase YqeH; Provisional
Probab=97.11 E-value=0.00067 Score=74.08 Aligned_cols=62 Identities=24% Similarity=0.335 Sum_probs=40.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCcc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS 163 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~ 163 (681)
-+++.++|.+|+|||||+|+|+.......... ...+..|+|.......+. + ...|+||||..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~----------~~s~~pGTT~~~~~~~l~--~-~~~l~DTPGi~ 221 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVI----------TTSRFPGTTLDKIEIPLD--D-GSFLYDTPGII 221 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceE----------EecCCCCccceeEEEEcC--C-CcEEEECCCcc
Confidence 46899999999999999999997531110000 011234777765544432 2 24799999974
No 429
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.08 E-value=0.0032 Score=55.51 Aligned_cols=82 Identities=21% Similarity=0.165 Sum_probs=53.3
Q ss_pred EEEEe-CCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHH
Q 005713 92 IAIIA-HVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (681)
Q Consensus 92 V~IiG-~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~ 170 (681)
|++.| ..|+||||+.-.|...... . + ..-.++|.+.. +.+.|+|||+..+. ...
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~--~-~-~~vl~~d~d~~-------------------~d~viiD~p~~~~~--~~~ 56 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR--R-G-KRVLLIDLDPQ-------------------YDYIIIDTPPSLGL--LTR 56 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh--C-C-CcEEEEeCCCC-------------------CCEEEEeCcCCCCH--HHH
Confidence 56666 5799999999888764321 1 1 11223333221 67899999997543 344
Q ss_pred HHHhhcceEEEEeeCCCCCchhhHHHHH
Q 005713 171 RILNMVEGVLLVVDSVEGPMPQTRFVLK 198 (681)
Q Consensus 171 ~~l~~aD~~llVvDa~~g~~~qt~~~l~ 198 (681)
.++..+|.+++++++...-.......++
T Consensus 57 ~~l~~ad~viv~~~~~~~s~~~~~~~~~ 84 (104)
T cd02042 57 NALAAADLVLIPVQPSPLDLDGLEKLLE 84 (104)
T ss_pred HHHHHCCEEEEeccCCHHHHHHHHHHHH
Confidence 7889999999999987644444444443
No 430
>PRK00098 GTPase RsgA; Reviewed
Probab=97.02 E-value=0.00094 Score=70.94 Aligned_cols=65 Identities=23% Similarity=0.309 Sum_probs=38.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
..++++|++|+|||||+|+|+....... +.+ .. ...+.+.+|.......+.. ...|+||||...|
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~--g~v----~~--~~~~G~htT~~~~~~~~~~---~~~~~DtpG~~~~ 229 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKT--GEI----SE--ALGRGKHTTTHVELYDLPG---GGLLIDTPGFSSF 229 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCC--cce----ec--cCCCCCcccccEEEEEcCC---CcEEEECCCcCcc
Confidence 5689999999999999999987533211 111 00 0111223443333333322 2479999998754
No 431
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.0018 Score=70.14 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=21.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
..+.++++|+.|+||||++..|...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~ 229 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQ 229 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998754
No 432
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.0027 Score=70.11 Aligned_cols=128 Identities=19% Similarity=0.171 Sum_probs=63.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccch---------hhcccceeEEeeee-------EEeeCC
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND---------LERERGITILSKNT-------SITYND 151 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~---------~E~erGiTi~~~~~-------~~~~~~ 151 (681)
.-..|+++|+.|+||||++..|............+.-...|... .-+-.|+.+..... .....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 34679999999999999999887642110000000000001100 00111332221111 112356
Q ss_pred eEEEEEeCCCccchhHHHHHHHhh------cceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCC
Q 005713 152 TKINIIDTPGHSDFGGEVERILNM------VEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (681)
Q Consensus 152 ~~i~iiDTPGh~df~~e~~~~l~~------aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~ 217 (681)
..+.+|||+|..........-+.. .+-.+||+|++.+... ..+++......++ -=++++|+|-.
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~-~~~~~~~f~~~~~-~~~I~TKlDEt 339 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDT-LDEVISAYQGHGI-HGCIITKVDEA 339 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHH-HHHHHHHhcCCCC-CEEEEEeeeCC
Confidence 789999999976543333222222 2347899998753221 1222222222233 35678999954
No 433
>PRK10867 signal recognition particle protein; Provisional
Probab=96.99 E-value=0.0023 Score=71.08 Aligned_cols=123 Identities=24% Similarity=0.310 Sum_probs=62.2
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCcc-cc-cccee---eee--eccch-hhcccceeEEeeee-----E--------E
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVF-RD-NQTVK---ERI--MDSND-LERERGITILSKNT-----S--------I 147 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~-~~-~~~~~---~~~--~D~~~-~E~erGiTi~~~~~-----~--------~ 147 (681)
...|+++|..|+||||++-.|....... .. ..-+. .+. .+... .-...|+.+..... . .
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a 179 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEA 179 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHH
Confidence 5678999999999999877776432110 00 00000 000 00000 01122444332110 0 1
Q ss_pred eeCCeEEEEEeCCCccch----hHHHHHHHh--hcceEEEEeeCCCCCchhhHHHHHHHHHc--CCE-EEEEEeecCC
Q 005713 148 TYNDTKINIIDTPGHSDF----GGEVERILN--MVEGVLLVVDSVEGPMPQTRFVLKKALEF--GHA-VVVVVNKIDR 216 (681)
Q Consensus 148 ~~~~~~i~iiDTPGh~df----~~e~~~~l~--~aD~~llVvDa~~g~~~qt~~~l~~~~~~--gip-~ivviNKiD~ 216 (681)
...++.+.|+||||.... ..++..... ..|.++||+|+..| | ..+..+..+ .++ .-+|+||+|.
T Consensus 180 ~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q--~av~~a~~F~~~~~i~giIlTKlD~ 252 (433)
T PRK10867 180 KENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---Q--DAVNTAKAFNEALGLTGVILTKLDG 252 (433)
T ss_pred HhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---H--HHHHHHHHHHhhCCCCEEEEeCccC
Confidence 123578999999996432 233333222 45788999998653 1 222233322 232 3567899995
No 434
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.98 E-value=0.0033 Score=69.81 Aligned_cols=125 Identities=23% Similarity=0.265 Sum_probs=63.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccch---------hhcccceeEEeeee-------------E
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND---------LERERGITILSKNT-------------S 146 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~---------~E~erGiTi~~~~~-------------~ 146 (681)
...++++|++|+||||++-.|...... .....+.---.|... ....-|+.+..... .
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~-~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKK-KQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH-hCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 567899999999999998877654210 000001000011000 01112333222110 0
Q ss_pred EeeCCeEEEEEeCCCccchh----HHHHHHH--hhcceEEEEeeCCCCCchhhHHHHHHHH-HcCCEEEEEEeecCCC
Q 005713 147 ITYNDTKINIIDTPGHSDFG----GEVERIL--NMVEGVLLVVDSVEGPMPQTRFVLKKAL-EFGHAVVVVVNKIDRP 217 (681)
Q Consensus 147 ~~~~~~~i~iiDTPGh~df~----~e~~~~l--~~aD~~llVvDa~~g~~~qt~~~l~~~~-~~gip~ivviNKiD~~ 217 (681)
....++.+.|+||||..... .++.... -..|.++||+|+..+ .......+... ..++ .=+++||+|..
T Consensus 178 ~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~~~v~i-~giIlTKlD~~ 252 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFNERLGL-TGVVLTKLDGD 252 (428)
T ss_pred HHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHHhhCCC-CEEEEeCccCc
Confidence 11245689999999964332 2222222 236889999998754 22222222222 1233 35669999953
No 435
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.97 E-value=0.0041 Score=67.58 Aligned_cols=126 Identities=17% Similarity=0.192 Sum_probs=65.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccc---hhhc------ccceeEEeeee--E-------Ee-
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSN---DLER------ERGITILSKNT--S-------IT- 148 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~---~~E~------erGiTi~~~~~--~-------~~- 148 (681)
..+.|+++|+.|+||||++..|...... ....+.---.|.. ..|+ .-|+.+..... . +.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~--~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHG--KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHH--cCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 3578999999999999999999754211 0001100001111 0111 11223221100 0 01
Q ss_pred eCCeEEEEEeCCCccch----hHHHHHHHhh--cceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCC
Q 005713 149 YNDTKINIIDTPGHSDF----GGEVERILNM--VEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (681)
Q Consensus 149 ~~~~~i~iiDTPGh~df----~~e~~~~l~~--aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~ 217 (681)
..++.+.||||||.... ..++...+.. .|.++||+|++-+.. .....++.....++ -=++++|+|-.
T Consensus 318 ~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~-d~~~i~~~F~~~~i-dglI~TKLDET 390 (436)
T PRK11889 318 EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIHI-DGIVFTKFDET 390 (436)
T ss_pred ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH-HHHHHHHHhcCCCC-CEEEEEcccCC
Confidence 12468999999997543 3344444433 467899999864321 11333333333333 35678999964
No 436
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.94 E-value=0.0015 Score=63.81 Aligned_cols=142 Identities=24% Similarity=0.237 Sum_probs=69.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHh-hcCccccccceeee----eeccchhhcccceeEE---eeeeEEe--------------
Q 005713 91 NIAIIAHVDHGKTTLVDAMLK-QAKVFRDNQTVKER----IMDSNDLERERGITIL---SKNTSIT-------------- 148 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~-~~~~~~~~~~~~~~----~~D~~~~E~erGiTi~---~~~~~~~-------------- 148 (681)
-+.|.|.-|||||||+++|+. .... .+..-+.+. -.|..-.+.. |+++. .....+.
T Consensus 2 v~ii~GfLGsGKTTli~~ll~~~~~~-~~~~vI~ne~g~~~iD~~~l~~~-~~~v~~l~~gcicc~~~~~~~~~l~~l~~ 79 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLKRNRQG-ERVAVIVNEFGEVNIDAELLQED-GVPVVELNNGCICCTLRDDLVEALRRLLR 79 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTT-S-EEEEECSTTSTHHHHHHHHTT-T-EEEEECTTTESS-TTS-HHHHHHHHCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCC-ceeEEEEccccccccchhhhccc-ceEEEEecCCCcccccHHHHHHHHHHHHH
Confidence 467899999999999999995 2111 111111111 1122222211 32221 1111111
Q ss_pred eC--CeEEEEEeCCCccchhHHHH--H---HHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCc
Q 005713 149 YN--DTKINIIDTPGHSDFGGEVE--R---ILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARP 221 (681)
Q Consensus 149 ~~--~~~i~iiDTPGh~df~~e~~--~---~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~ 221 (681)
.. +..+.||.+.|..+....+. . ..-..+.+|.|+|+..-....... .........-=++++||+|+.+.+
T Consensus 80 ~~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~-~~~~~Qi~~ADvIvlnK~D~~~~~- 157 (178)
T PF02492_consen 80 EYEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIP-ELLREQIAFADVIVLNKIDLVSDE- 157 (178)
T ss_dssp CCHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHC-HHHHHHHCT-SEEEEE-GGGHHHH-
T ss_pred hcCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccch-hhhhhcchhcCEEEEeccccCChh-
Confidence 12 35788999999776655411 1 122357899999996521111111 111122234458999999986432
Q ss_pred ccchhhHHHHHHHhhc
Q 005713 222 DYVINSTFELFIELNA 237 (681)
Q Consensus 222 ~~~~~ei~~~~~~l~~ 237 (681)
+.++.+++..+++..
T Consensus 158 -~~i~~~~~~ir~lnp 172 (178)
T PF02492_consen 158 -QKIERVREMIRELNP 172 (178)
T ss_dssp ---HHHHHHHHHHH-T
T ss_pred -hHHHHHHHHHHHHCC
Confidence 234555666655544
No 437
>PRK13796 GTPase YqeH; Provisional
Probab=96.93 E-value=0.003 Score=69.02 Aligned_cols=100 Identities=18% Similarity=0.086 Sum_probs=58.6
Q ss_pred cchhHHHHHHHhhcc-eEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 163 SDFGGEVERILNMVE-GVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 163 ~df~~e~~~~l~~aD-~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
.+|.. +...+...| .+++|||+.+-.... ...+.... .+.|+++|+||+|+.... ...+++.+.+...... ..
T Consensus 57 ~~~~~-~l~~i~~~~~lIv~VVD~~D~~~s~-~~~L~~~~-~~kpviLViNK~DLl~~~--~~~~~i~~~l~~~~k~-~g 130 (365)
T PRK13796 57 DDFLK-LLNGIGDSDALVVNVVDIFDFNGSW-IPGLHRFV-GNNPVLLVGNKADLLPKS--VKKNKVKNWLRQEAKE-LG 130 (365)
T ss_pred HHHHH-HHHhhcccCcEEEEEEECccCCCch-hHHHHHHh-CCCCEEEEEEchhhCCCc--cCHHHHHHHHHHHHHh-cC
Confidence 35655 344445455 899999998844332 22333222 268999999999996432 1122233222221110 01
Q ss_pred CC-ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 242 CD-FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 242 ~~-~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.. ..++.+||++|+ |+..|++.+.++.
T Consensus 131 ~~~~~v~~vSAk~g~----------gI~eL~~~I~~~~ 158 (365)
T PRK13796 131 LRPVDVVLISAQKGH----------GIDELLEAIEKYR 158 (365)
T ss_pred CCcCcEEEEECCCCC----------CHHHHHHHHHHhc
Confidence 11 148999999999 8888888887654
No 438
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=96.88 E-value=0.0025 Score=57.41 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
+|+++|..|+|||+|+.++....+
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~~~ 25 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQFPF 25 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcCCc
Confidence 689999999999999999965433
No 439
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.0054 Score=61.39 Aligned_cols=116 Identities=21% Similarity=0.298 Sum_probs=72.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH--
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG-- 167 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~-- 167 (681)
++|.++|+--+||||.-....++... .+.-+ +|....+|.+. +...=..+.+||-||+.+|..
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsP------neTlf-----lESTski~~d~----is~sfinf~v~dfPGQ~~~Fd~s 92 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSP------NETLF-----LESTSKITRDH----ISNSFINFQVWDFPGQMDFFDPS 92 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCC------CceeE-----eeccCcccHhh----hhhhhcceEEeecCCccccCCCc
Confidence 44999999999999987766554221 11111 12111222111 111124678999999977643
Q ss_pred -HHHHHHhhcceEEEEeeCCCCCch-hhHHHHHHHHHc----CCEEEEEEeecCCCCCC
Q 005713 168 -EVERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALEF----GHAVVVVVNKIDRPSAR 220 (681)
Q Consensus 168 -e~~~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~~~----gip~ivviNKiD~~~~~ 220 (681)
..+..++.+-+.|+|+||.+..+. -++-++..++.+ ++.+=|++.|+|....+
T Consensus 93 ~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd 151 (347)
T KOG3887|consen 93 FDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDD 151 (347)
T ss_pred cCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchh
Confidence 346688999999999999875543 344444444444 36688999999987543
No 440
>PRK13695 putative NTPase; Provisional
Probab=96.84 E-value=0.0028 Score=61.66 Aligned_cols=35 Identities=14% Similarity=0.328 Sum_probs=28.4
Q ss_pred EEEee---CCCCCchhhHHHHHHHHHcCCEEEEEEeec
Q 005713 180 LLVVD---SVEGPMPQTRFVLKKALEFGHAVVVVVNKI 214 (681)
Q Consensus 180 llVvD---a~~g~~~qt~~~l~~~~~~gip~ivviNKi 214 (681)
++++| ..+....+....+..+.+.+.|+++++||.
T Consensus 99 ~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 99 VIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred EEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch
Confidence 47889 556666777888888888899999999985
No 441
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.82 E-value=0.0044 Score=67.93 Aligned_cols=128 Identities=19% Similarity=0.241 Sum_probs=67.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCcc--ccccceeeeeeccch---hh------cccceeEEeeeeE-------Eee
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVF--RDNQTVKERIMDSND---LE------RERGITILSKNTS-------ITY 149 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~--~~~~~~~~~~~D~~~---~E------~erGiTi~~~~~~-------~~~ 149 (681)
....|+++|+.|+||||.+..|....... .....+.--..|... .| ..-|+.+...... -..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 35689999999999999998887542210 011111100111100 00 0013322211110 012
Q ss_pred CCeEEEEEeCCCccchh----HHHHHHHhhc--c-eEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCC
Q 005713 150 NDTKINIIDTPGHSDFG----GEVERILNMV--E-GVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (681)
Q Consensus 150 ~~~~i~iiDTPGh~df~----~e~~~~l~~a--D-~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~ 217 (681)
.++.+.||||||..... .++...+..+ + -.+||+||+.+.... .+.+......+ +-=++++|+|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~-~~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDV-KEIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHH-HHHHHHhcCCC-CCEEEEEeccCC
Confidence 56789999999974322 3455555543 3 589999998873222 23333333323 345678999953
No 442
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=96.81 E-value=0.0073 Score=52.76 Aligned_cols=76 Identities=14% Similarity=0.205 Sum_probs=61.3
Q ss_pred EEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEecccc-ccc
Q 005713 290 QMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDD-IQI 368 (681)
Q Consensus 290 ~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~-~~~ 368 (681)
.+.|.....+.+.|.++..-|.+|+|++||.+...... .||+.++... ...+.+|.||+.|.+.|+++ ...
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~~~-----GkVr~~~d~~---g~~v~~a~Ps~~v~i~g~~~~p~a 73 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGGTY-----GKIRTMVDEN---GKALLEAGPSTPVEILGLKDVPKA 73 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECCcc-----ceEEEEECCC---CCCccccCCCCCEEEeeecCCccC
Confidence 45677888899999999999999999999999886543 4888886544 45789999999999999875 455
Q ss_pred CCeee
Q 005713 369 GETIA 373 (681)
Q Consensus 369 Gdtl~ 373 (681)
||.+.
T Consensus 74 Gd~~~ 78 (95)
T cd03701 74 GDGVL 78 (95)
T ss_pred CCEEE
Confidence 77664
No 443
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.75 E-value=0.0075 Score=65.26 Aligned_cols=144 Identities=19% Similarity=0.124 Sum_probs=75.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceee----eeeccchhhcc--------cceeEEeeeeEEee------
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKE----RIMDSNDLERE--------RGITILSKNTSITY------ 149 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~----~~~D~~~~E~e--------rGiTi~~~~~~~~~------ 149 (681)
+++-..|.|--|+|||||+++|+...... +..-+.+ .-+|..-.... .-+.+.....++..
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~-~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~ 81 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQNAAGR-RIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIP 81 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhccCCC-cEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHH
Confidence 35667899999999999999999753211 1111111 11222111110 01111111112111
Q ss_pred ---------CCeEEEEEeCCCccchhHHHHHHH-------hhcceEEEEeeCCCCCchh--------------------h
Q 005713 150 ---------NDTKINIIDTPGHSDFGGEVERIL-------NMVEGVLLVVDSVEGPMPQ--------------------T 193 (681)
Q Consensus 150 ---------~~~~i~iiDTPGh~df~~e~~~~l-------~~aD~~llVvDa~~g~~~q--------------------t 193 (681)
......+|.|.|..+....+.... -..|++|.|||+....... .
T Consensus 82 ~l~~l~~~~~~~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (341)
T TIGR02475 82 TMTKLLARRQRPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHE 161 (341)
T ss_pred HHHHHHhccCCCCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhcccccccccc
Confidence 134678999999988766555431 1357899999987532100 0
Q ss_pred HHHHHH-HHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHh
Q 005713 194 RFVLKK-ALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIEL 235 (681)
Q Consensus 194 ~~~l~~-~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l 235 (681)
..+-.. ..+...-=+|++||+|+.+.. .++++++.+.++
T Consensus 162 ~~~~~~~~~Qi~~AD~IvlnK~Dl~~~~---~l~~~~~~l~~~ 201 (341)
T TIGR02475 162 TPLEELFEDQLACADLVILNKADLLDAA---GLARVRAEIAAE 201 (341)
T ss_pred chHHHHHHHHHHhCCEEEEeccccCCHH---HHHHHHHHHHHh
Confidence 000001 112223358899999987542 344555555443
No 444
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=96.71 E-value=0.0049 Score=64.75 Aligned_cols=84 Identities=19% Similarity=0.260 Sum_probs=56.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEee--------------CC--
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY--------------ND-- 151 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~--------------~~-- 151 (681)
...+++|+|-+++|||||+++|.+..-...... =.||+.....+.. ++
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfP----------------F~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~v 82 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFP----------------FCTIDPNEARVEVPDSRFDLLCPIYGPKSKV 82 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCC----------------cceeccccceeecCchHHHHHHHhcCCccee
Confidence 456899999999999999999987533211111 1233333332222 11
Q ss_pred -eEEEEEeCCCcc-------chhHHHHHHHhhcceEEEEeeCCC
Q 005713 152 -TKINIIDTPGHS-------DFGGEVERILNMVEGVLLVVDSVE 187 (681)
Q Consensus 152 -~~i~iiDTPGh~-------df~~e~~~~l~~aD~~llVvDa~~ 187 (681)
..++++|++|.. -.+....+-++.+|+++-||++.+
T Consensus 83 pa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 83 PAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred eeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 368999999963 234455667899999999999876
No 445
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.70 E-value=0.0069 Score=68.03 Aligned_cols=127 Identities=18% Similarity=0.160 Sum_probs=63.2
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccc--------h-hhcccceeEEeee-------eEEeeCCe
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSN--------D-LERERGITILSKN-------TSITYNDT 152 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~--------~-~E~erGiTi~~~~-------~~~~~~~~ 152 (681)
...++++|+.|+||||++..|............+.--..|.. . .-...|+.+.... ......++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~ 335 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNK 335 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCC
Confidence 356999999999999999999864311100001110001111 0 0112233322111 11233456
Q ss_pred EEEEEeCCCccchhHHHHHHHhh-cc-----eEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCC
Q 005713 153 KINIIDTPGHSDFGGEVERILNM-VE-----GVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (681)
Q Consensus 153 ~i~iiDTPGh~df~~e~~~~l~~-aD-----~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~ 217 (681)
.+.+|||+|.......+...+.+ .+ -.+||+|+..+.. ...+.++.....++ --+++||+|-.
T Consensus 336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~-~l~~i~~~f~~~~~-~g~IlTKlDet 404 (484)
T PRK06995 336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGD-TLNEVVQAYRGPGL-AGCILTKLDEA 404 (484)
T ss_pred CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHH-HHHHHHHHhccCCC-CEEEEeCCCCc
Confidence 78999999954333222222222 12 2689999876431 12222333333333 35668999954
No 446
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.61 E-value=0.0072 Score=66.42 Aligned_cols=125 Identities=18% Similarity=0.229 Sum_probs=63.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccch---hh------cccceeEEee------eeEEeeCCeEE
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND---LE------RERGITILSK------NTSITYNDTKI 154 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~---~E------~erGiTi~~~------~~~~~~~~~~i 154 (681)
..++++|++|+||||++..|...... .....+.---.|... .+ ...|+.+... ...+.-.++.+
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~-~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFL-HMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-hcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 45889999999999999999853211 000001000011100 00 0112222111 00011246789
Q ss_pred EEEeCCCccch----hHHHHHHHhhc-----ceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCC
Q 005713 155 NIIDTPGHSDF----GGEVERILNMV-----EGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (681)
Q Consensus 155 ~iiDTPGh~df----~~e~~~~l~~a-----D~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~ 217 (681)
.||||||.... ..++...+..+ .-.+||+|++.+... ....+......++ -=++++|+|-.
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~-~~~~~~~f~~~~~-~glIlTKLDEt 372 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHH-TLTVLKAYESLNY-RRILLTKLDEA 372 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHH-HHHHHHHhcCCCC-CEEEEEcccCC
Confidence 99999997532 23333344332 258899999876322 2233333333333 35678999954
No 447
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.59 E-value=0.0021 Score=63.14 Aligned_cols=68 Identities=18% Similarity=0.174 Sum_probs=41.4
Q ss_pred eEEEEEeCCCccch------hHHHHHHHhhcc---eEEEEeeCCCC-----CchhhHHHHHHHHHcCCEEEEEEeecCCC
Q 005713 152 TKINIIDTPGHSDF------GGEVERILNMVE---GVLLVVDSVEG-----PMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (681)
Q Consensus 152 ~~i~iiDTPGh~df------~~e~~~~l~~aD---~~llVvDa~~g-----~~~qt~~~l~~~~~~gip~ivviNKiD~~ 217 (681)
-.+.|+|+||+-+. .....+.+..-+ ++++++|+.-- ........+.......+|.|=|++|||+.
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLl 177 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLL 177 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHh
Confidence 36889999997442 233333333322 57888886431 11222233444455689999999999987
Q ss_pred CC
Q 005713 218 SA 219 (681)
Q Consensus 218 ~~ 219 (681)
..
T Consensus 178 k~ 179 (273)
T KOG1534|consen 178 KD 179 (273)
T ss_pred hh
Confidence 53
No 448
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=96.58 E-value=0.039 Score=63.92 Aligned_cols=104 Identities=21% Similarity=0.231 Sum_probs=77.3
Q ss_pred cchhHHHHHhhCC---CCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeec
Q 005713 267 LGPLFESIMRCIP---GPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEK 343 (681)
Q Consensus 267 i~~Ll~~I~~~lp---~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g 343 (681)
+..|++.+.+++. +|.....---.+.|.+++..+..|.++-++|..|++++|..+.+.+.+......+|.+|.
T Consensus 468 IY~l~d~~~~~~~~~~~~~~~~~~~g~a~v~~vf~~~~~~~iaG~~V~~G~i~~~~~~~v~r~~~~i~~g~i~sl~---- 543 (587)
T TIGR00487 468 IYKLIDEIRAAMKGMLDPEYEEEIIGQAEVRQVFNVPKIGNIAGCYVTEGVIKRGNPLRVIRDGVVIFEGEIDSLK---- 543 (587)
T ss_pred HHHHHHHHHHHHHhccCcceeeEeeeeEEEEEEEecCCCCEEEEEEEecCEEecCCeEEEEeCCEEEEeccchHhh----
Confidence 4666666665542 232211222345566777777778999999999999999999999876655556888884
Q ss_pred cceeecceecCCCEEEE--ecccccccCCeeec
Q 005713 344 FSRVSAEIVAAGDICAV--CGIDDIQIGETIAD 374 (681)
Q Consensus 344 ~~~~~v~~a~aGdiv~i--~gl~~~~~Gdtl~~ 374 (681)
..+.+++++..|+-|+| .+..+++.||.|-.
T Consensus 544 ~~k~~v~ev~~g~ecgi~~~~~~~~~~gD~i~~ 576 (587)
T TIGR00487 544 RFKDDVKEVSNGYECGIGIKNYNDIKEGDIIEA 576 (587)
T ss_pred ccCccccEECCCCEEEEEEeccccCCCCCEEEE
Confidence 45578999999999999 46789999999964
No 449
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.58 E-value=0.0026 Score=64.80 Aligned_cols=120 Identities=18% Similarity=0.215 Sum_probs=71.5
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCcc
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHS 163 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~ 163 (681)
.--.+||..+|..|-|||||++.|....+........ ..++-.......+.-.+ .+++|+||-|+.
T Consensus 39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~------------~~~V~L~~~TyelqEsnvrlKLtiv~tvGfG 106 (406)
T KOG3859|consen 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHT------------LPNVKLQANTYELQESNVRLKLTIVDTVGFG 106 (406)
T ss_pred cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccC------------CCCceeecchhhhhhcCeeEEEEEEeecccc
Confidence 3457999999999999999999999876543221110 01222222222222223 478999999974
Q ss_pred chh--------------HHHHHHHh---------------hcceEEEEeeCCC-CCchhhHHHHHHHHHcCCEEEEEEee
Q 005713 164 DFG--------------GEVERILN---------------MVEGVLLVVDSVE-GPMPQTRFVLKKALEFGHAVVVVVNK 213 (681)
Q Consensus 164 df~--------------~e~~~~l~---------------~aD~~llVvDa~~-g~~~qt~~~l~~~~~~gip~ivviNK 213 (681)
|-. ...+.++. ..+.||+.|..+- +...-+.-.++.+.. .+.+|-++-|
T Consensus 107 DQinK~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Lds-kVNIIPvIAK 185 (406)
T KOG3859|consen 107 DQINKEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDS-KVNIIPVIAK 185 (406)
T ss_pred cccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhh-hhhhHHHHHH
Confidence 421 11122221 2467888888653 444444444444433 5678888899
Q ss_pred cCCCC
Q 005713 214 IDRPS 218 (681)
Q Consensus 214 iD~~~ 218 (681)
.|...
T Consensus 186 aDtis 190 (406)
T KOG3859|consen 186 ADTIS 190 (406)
T ss_pred hhhhh
Confidence 99653
No 450
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.56 E-value=0.0047 Score=77.29 Aligned_cols=113 Identities=20% Similarity=0.167 Sum_probs=61.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhccc--ceeEEeeeeEEee-CCeEEEEEeCCCcc--
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERER--GITILSKNTSITY-NDTKINIIDTPGHS-- 163 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~er--GiTi~~~~~~~~~-~~~~i~iiDTPGh~-- 163 (681)
.+=.+|||+.|+|||||+.+. +..+..... ...+..+ |-|. .|.| =...-.+|||+|..
T Consensus 111 LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~----------~~~~~~~~~~~t~-----~c~wwf~~~avliDtaG~y~~ 174 (1169)
T TIGR03348 111 LPWYLVIGPPGSGKTTLLQNS-GLKFPLAER----------LGAAALRGVGGTR-----NCDWWFTDEAVLIDTAGRYTT 174 (1169)
T ss_pred CCCEEEECCCCCchhHHHHhC-CCCCcCchh----------hccccccCCCCCc-----ccceEecCCEEEEcCCCcccc
Confidence 455789999999999999876 222211110 0000001 1111 1221 22355699999932
Q ss_pred ------chhHHHHHHHh---------hcceEEEEeeCCCCCc---h-------hhHHHHHHHH---HcCCEEEEEEeecC
Q 005713 164 ------DFGGEVERILN---------MVEGVLLVVDSVEGPM---P-------QTRFVLKKAL---EFGHAVVVVVNKID 215 (681)
Q Consensus 164 ------df~~e~~~~l~---------~aD~~llVvDa~~g~~---~-------qt~~~l~~~~---~~gip~ivviNKiD 215 (681)
....++...+. -.||+|++||+.+=.. . ..+..+..+. ...+|+.|+++|||
T Consensus 175 ~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~D 254 (1169)
T TIGR03348 175 QDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKAD 254 (1169)
T ss_pred CCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecch
Confidence 12234444433 3799999999775221 1 1112222222 23589999999999
Q ss_pred CC
Q 005713 216 RP 217 (681)
Q Consensus 216 ~~ 217 (681)
+.
T Consensus 255 ll 256 (1169)
T TIGR03348 255 LL 256 (1169)
T ss_pred hh
Confidence 76
No 451
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=96.54 E-value=0.057 Score=64.42 Aligned_cols=104 Identities=19% Similarity=0.202 Sum_probs=78.6
Q ss_pred cchhHHHHHhhC---CCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeec
Q 005713 267 LGPLFESIMRCI---PGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEK 343 (681)
Q Consensus 267 i~~Ll~~I~~~l---p~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g 343 (681)
+..|+|.+..++ -.|.....---.+.|.++|..+..|.|+-++|..|+|+.+..+.+...+.....++|.+|.
T Consensus 670 IY~l~d~~~~~~~~~l~~~~~e~~~g~a~v~~vF~~~k~~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~g~i~slk---- 745 (787)
T PRK05306 670 IYDLIDDVKAAMSGMLEPEYEEEIIGQAEVREVFKVSKVGTIAGCMVTEGKIKRNAKVRVLRDGVVIYEGELESLK---- 745 (787)
T ss_pred HHHHHHHHHHHHhhccCchhheeeeeeEEEEEEEecCCCCeEEEEEEeeCEEecCCeEEEEeCCEEEEEeEEehhc----
Confidence 456666665544 2333222222345667788888889999999999999999999999877665567888884
Q ss_pred cceeecceecCCCEEEE--ecccccccCCeeec
Q 005713 344 FSRVSAEIVAAGDICAV--CGIDDIQIGETIAD 374 (681)
Q Consensus 344 ~~~~~v~~a~aGdiv~i--~gl~~~~~Gdtl~~ 374 (681)
..+.++.++..|.-|+| .++.|+..||+|-.
T Consensus 746 ~~k~~v~ev~~g~ecgi~~~~~~d~~~gD~ie~ 778 (787)
T PRK05306 746 RFKDDVKEVRAGYECGIGLENYNDIKEGDIIEA 778 (787)
T ss_pred ccCcCccEeCCCCEEEEEeeccccCCCCCEEEE
Confidence 45578999999999999 57889999999854
No 452
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.014 Score=61.26 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=23.5
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
.....|+++|..|+|||||++.|..++.
T Consensus 186 tdf~VIgvlG~QgsGKStllslLaans~ 213 (491)
T KOG4181|consen 186 TDFTVIGVLGGQGSGKSTLLSLLAANSL 213 (491)
T ss_pred CCeeEEEeecCCCccHHHHHHHHhccCh
Confidence 4566789999999999999999976643
No 453
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.52 E-value=0.0036 Score=65.16 Aligned_cols=67 Identities=21% Similarity=0.281 Sum_probs=46.9
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCc
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh 162 (681)
.+...++.|+|-+|+|||||+|++............+ --+.|+|+..+...--.....+.++||||.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~v----------G~~pGVT~~V~~~iri~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARV----------GAEPGVTRRVSERIRISHRPPVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceec----------cCCCCceeeehhheEeccCCceEEecCCCc
Confidence 3446789999999999999999987654432222111 224589988877443344567999999995
No 454
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.52 E-value=0.015 Score=49.49 Aligned_cols=77 Identities=19% Similarity=0.136 Sum_probs=51.9
Q ss_pred EEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH-HH
Q 005713 92 IAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE-VE 170 (681)
Q Consensus 92 V~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e-~~ 170 (681)
+++.|..|+||||++..|......... .-.+.| .+.|+|+|+..+.... ..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~----~v~~~~------------------------d~iivD~~~~~~~~~~~~~ 53 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK----RVLLID------------------------DYVLIDTPPGLGLLVLLCL 53 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC----eEEEEC------------------------CEEEEeCCCCccchhhhhh
Confidence 678899999999999999775322100 001111 8899999987655322 24
Q ss_pred HHHhhcceEEEEeeCCCCCchhhHHH
Q 005713 171 RILNMVEGVLLVVDSVEGPMPQTRFV 196 (681)
Q Consensus 171 ~~l~~aD~~llVvDa~~g~~~qt~~~ 196 (681)
..+..+|.++++++............
T Consensus 54 ~~~~~~~~vi~v~~~~~~~~~~~~~~ 79 (99)
T cd01983 54 LALLAADLVIIVTTPEALAVLGARRL 79 (99)
T ss_pred hhhhhCCEEEEecCCchhhHHHHHHH
Confidence 56778999999999877555544443
No 455
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.48 E-value=0.0046 Score=72.63 Aligned_cols=126 Identities=21% Similarity=0.222 Sum_probs=61.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccch---hh------cccceeEEeeee-------EEeeCCeE
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND---LE------RERGITILSKNT-------SITYNDTK 153 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~---~E------~erGiTi~~~~~-------~~~~~~~~ 153 (681)
..|+++|+.|+||||++..|............+.---.|... .| ..-|+.+..... --...++.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 568999999999999999998543111000011000011100 00 011222211000 00224568
Q ss_pred EEEEeCCCccchhHHHHHHHhh------cceEEEEeeCCCCCchhhH-HHHHHHHHc-CC-EEEEEEeecCCC
Q 005713 154 INIIDTPGHSDFGGEVERILNM------VEGVLLVVDSVEGPMPQTR-FVLKKALEF-GH-AVVVVVNKIDRP 217 (681)
Q Consensus 154 i~iiDTPGh~df~~e~~~~l~~------aD~~llVvDa~~g~~~qt~-~~l~~~~~~-gi-p~ivviNKiD~~ 217 (681)
+.||||||.......+...+.+ .+-.+||+|++.+ .++. ++++..... +. .-=++++|+|-.
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 9999999954333333332222 3458999998753 2221 222222221 11 235679999954
No 456
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.42 E-value=0.013 Score=56.63 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=51.5
Q ss_pred CCeEEEEEeCCCccchhHHHHHHH--hhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEE-EEEEeecCCC
Q 005713 150 NDTKINIIDTPGHSDFGGEVERIL--NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAV-VVVVNKIDRP 217 (681)
Q Consensus 150 ~~~~i~iiDTPGh~df~~e~~~~l--~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~-ivviNKiD~~ 217 (681)
.++.+.|+|||+... ......+ ..+|.+|+|+.+.......+...++.+.+.+.++ -+|+|+.+..
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 578899999998742 2333343 5799999999988777788888999999988875 5789999853
No 457
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=96.35 E-value=0.012 Score=60.15 Aligned_cols=64 Identities=9% Similarity=0.099 Sum_probs=46.6
Q ss_pred CCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHH------HcCCEEEEEEeecC
Q 005713 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKAL------EFGHAVVVVVNKID 215 (681)
Q Consensus 150 ~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~------~~gip~ivviNKiD 215 (681)
+++.+.||||||+.. ..+..++..+|.+|+.+.++.-....+...+..+. ..+++..+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 468999999999764 45667889999999998876644444444443332 23678889999987
No 458
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.33 E-value=0.0079 Score=65.27 Aligned_cols=154 Identities=19% Similarity=0.327 Sum_probs=79.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccch---hhcc------cceeEEeeeeE-------EeeCC
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND---LERE------RGITILSKNTS-------ITYND 151 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~---~E~e------rGiTi~~~~~~-------~~~~~ 151 (681)
+.+.|+++|+.|+||||.+-.|............+.---+|+.. .|+= -|+.+...... -.+.+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 47889999999999999988887654411111112111112111 0100 02232221111 11346
Q ss_pred eEEEEEeCCCccchh----HHHHHHHhhc--ceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccch
Q 005713 152 TKINIIDTPGHSDFG----GEVERILNMV--EGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVI 225 (681)
Q Consensus 152 ~~i~iiDTPGh~df~----~e~~~~l~~a--D~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~ 225 (681)
+.+.||||.|+.-.. .++..+++.+ .-+.||++++.. ...-++.+......++. =++++|+|-.. .+
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~~~f~~~~i~-~~I~TKlDET~-----s~ 354 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEIIKQFSLFPID-GLIFTKLDETT-----SL 354 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHHHHhccCCcc-eeEEEcccccC-----ch
Confidence 789999999975443 4444444444 346778887642 11222333444333433 45589999542 23
Q ss_pred hhHHHHHHHhhcccccCCceEEEeecccCCCC
Q 005713 226 NSTFELFIELNATDEQCDFQAIYASGIQGKAG 257 (681)
Q Consensus 226 ~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~ 257 (681)
-.+.+++.+- ..|+-|++ +|.++
T Consensus 355 G~~~s~~~e~-------~~PV~YvT--~GQ~V 377 (407)
T COG1419 355 GNLFSLMYET-------RLPVSYVT--NGQRV 377 (407)
T ss_pred hHHHHHHHHh-------CCCeEEEe--CCCCC
Confidence 3333333222 34788876 45543
No 459
>CHL00189 infB translation initiation factor 2; Provisional
Probab=96.32 E-value=0.078 Score=62.72 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=77.1
Q ss_pred cchhHHHHHhhC---CCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeec
Q 005713 267 LGPLFESIMRCI---PGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEK 343 (681)
Q Consensus 267 i~~Ll~~I~~~l---p~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g 343 (681)
+..|++.+-.++ -+|.....-.-.+.|..+|.... |.|+-++|.+|+|+.|..+.+...+.....++|.+|.
T Consensus 625 IY~lid~~~~~~~~~l~~~~~~~~~g~a~v~~vF~~~k-~~iaGc~V~~G~i~~~~~~rv~R~~~~i~~G~i~slk---- 699 (742)
T CHL00189 625 IYDLLEYIEALMEDLLDPEYKKVPIGEAEVKTVFPLAK-RFVAGCRVTEGKITKNALIKVIRENKLIYEGKITSLK---- 699 (742)
T ss_pred HHHHHHHHHHHHhhccCceeeeeeceeEEeeEEEecCC-CEEEEEEEecCEEecCCeEEEEeCCeEEEEeEEhhHh----
Confidence 455666555443 23333222334556667777665 8999999999999999999999988776667888884
Q ss_pred cceeecceecCCCEEEE--ecccccccCCeeec
Q 005713 344 FSRVSAEIVAAGDICAV--CGIDDIQIGETIAD 374 (681)
Q Consensus 344 ~~~~~v~~a~aGdiv~i--~gl~~~~~Gdtl~~ 374 (681)
..+.++.++..|.-|+| .++.+++.||+|-.
T Consensus 700 ~~k~~v~ev~~g~ecgi~i~~~~d~~~gD~ie~ 732 (742)
T CHL00189 700 RVKEDVEEAQEGNECGIFIEEFQLWQSGDKIHA 732 (742)
T ss_pred hcCccccEeCCCCEEEEEeeCCCCCCcCCEEEE
Confidence 44578999999999999 57889999999854
No 460
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=96.30 E-value=0.013 Score=62.83 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=63.5
Q ss_pred cceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCC-----------chhhHHHHHHHHHc-
Q 005713 136 RGITILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGP-----------MPQTRFVLKKALEF- 203 (681)
Q Consensus 136 rGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~-----------~~qt~~~l~~~~~~- 203 (681)
|--|.......|.+++..+.++|.+|+..-+.-|...+-.++++|+|++.++-. +.++..+++.....
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 445667778889999999999999999888888888889999999999977522 22344444444443
Q ss_pred ---CCEEEEEEeecCCC
Q 005713 204 ---GHAVVVVVNKIDRP 217 (681)
Q Consensus 204 ---gip~ivviNKiD~~ 217 (681)
+.++|+++||.|+.
T Consensus 259 ~F~~tsiiLFLNK~DLF 275 (354)
T KOG0082|consen 259 WFANTSIILFLNKKDLF 275 (354)
T ss_pred ccccCcEEEEeecHHHH
Confidence 46899999999985
No 461
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.29 E-value=0.016 Score=60.01 Aligned_cols=140 Identities=17% Similarity=0.172 Sum_probs=76.7
Q ss_pred cCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhccccee------------EEeeeeEEeeC--
Q 005713 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGIT------------ILSKNTSITYN-- 150 (681)
Q Consensus 85 ~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiT------------i~~~~~~~~~~-- 150 (681)
...+++.-.|.|--|+|||||++.++...... +..-..+.+-|+.+.|+.--.. .......+..+
T Consensus 53 ~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgK-RIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~ 131 (391)
T KOG2743|consen 53 LGARIPVTIITGYLGAGKTTLLNYILTGQHGK-RIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDN 131 (391)
T ss_pred CCCccceEEEEecccCChHHHHHHHHccCCCc-eEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecch
Confidence 34567777899999999999999998654321 1111223344444443321111 11122222222
Q ss_pred -------------CeEEEEEeCCCccchhHHHHHH-----Hh---hcceEEEEeeCCCC-----------CchhhHHHHH
Q 005713 151 -------------DTKINIIDTPGHSDFGGEVERI-----LN---MVEGVLLVVDSVEG-----------PMPQTRFVLK 198 (681)
Q Consensus 151 -------------~~~i~iiDTPGh~df~~e~~~~-----l~---~aD~~llVvDa~~g-----------~~~qt~~~l~ 198 (681)
.....++.|-|.++-....... +. ..|++|-||||... ......+.+.
T Consensus 132 gvraie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA 211 (391)
T KOG2743|consen 132 GVRAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIA 211 (391)
T ss_pred HHHHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHh
Confidence 2367899999998765433322 21 26899999998752 1121111111
Q ss_pred HHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHH
Q 005713 199 KALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIE 234 (681)
Q Consensus 199 ~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~ 234 (681)
.| --+++||.|+... +.+.+++.....
T Consensus 212 ~A------D~II~NKtDli~~---e~~~~l~q~I~~ 238 (391)
T KOG2743|consen 212 LA------DRIIMNKTDLVSE---EEVKKLRQRIRS 238 (391)
T ss_pred hh------heeeeccccccCH---HHHHHHHHHHHH
Confidence 11 2467899999864 334444444433
No 462
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.29 E-value=0.012 Score=61.63 Aligned_cols=81 Identities=22% Similarity=0.257 Sum_probs=56.8
Q ss_pred cceEEEEeeCCCCCch--hhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceEEEeeccc
Q 005713 176 VEGVLLVVDSVEGPMP--QTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQ 253 (681)
Q Consensus 176 aD~~llVvDa~~g~~~--qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~ 253 (681)
.|-+++|+.+.++.+. ...+.|-.+...|+..++++||+|+.+...... ++....+.+ ..++++++|+++
T Consensus 80 ~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~-~~~~~~y~~-------~gy~v~~~s~~~ 151 (301)
T COG1162 80 NDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAV-KELLREYED-------IGYPVLFVSAKN 151 (301)
T ss_pred cceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHH-HHHHHHHHh-------CCeeEEEecCcC
Confidence 6778888888876543 344677777888999999999999986542222 333333333 356899999999
Q ss_pred CCCCCCCCCCCCCcchhHHHH
Q 005713 254 GKAGLSPDNLADDLGPLFESI 274 (681)
Q Consensus 254 G~~~~~~~~~~~gi~~Ll~~I 274 (681)
+. ++..|.+.+
T Consensus 152 ~~----------~~~~l~~~l 162 (301)
T COG1162 152 GD----------GLEELAELL 162 (301)
T ss_pred cc----------cHHHHHHHh
Confidence 98 766666554
No 463
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.28 E-value=0.028 Score=58.71 Aligned_cols=127 Identities=17% Similarity=0.170 Sum_probs=65.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccch--------h-hcccceeEEeeee--E-------E-e
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND--------L-ERERGITILSKNT--S-------I-T 148 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~--------~-E~erGiTi~~~~~--~-------~-~ 148 (681)
+..+++++|..|+|||||+..|...... ....+.--..|... . -..-|+.+..... . + .
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~--~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHG--KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh
Confidence 3468999999999999999988765211 00111100111110 0 0011222221100 0 0 1
Q ss_pred eCCeEEEEEeCCCccch----hHHHHHHHhh--cceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCC
Q 005713 149 YNDTKINIIDTPGHSDF----GGEVERILNM--VEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS 218 (681)
Q Consensus 149 ~~~~~i~iiDTPGh~df----~~e~~~~l~~--aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~ 218 (681)
..++.+.||||||.... ..++...++. .|-++||+|++.+.. ....+++.....++ -=++++|+|-..
T Consensus 152 ~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~-d~~~~~~~f~~~~~-~~~I~TKlDet~ 225 (270)
T PRK06731 152 EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKDIHI-DGIVFTKFDETA 225 (270)
T ss_pred cCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH-HHHHHHHHhCCCCC-CEEEEEeecCCC
Confidence 13578999999997643 2333344333 456899999875321 22223333333233 356789999643
No 464
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=96.24 E-value=0.056 Score=60.70 Aligned_cols=117 Identities=16% Similarity=0.146 Sum_probs=67.4
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCc-cch
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH-SDF 165 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh-~df 165 (681)
.+..+.-++|..++|||.|++++++.........+.. -..++.. ..+......+.+-|.+-. .+|
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~------------~~~avn~--v~~~g~~k~LiL~ei~~~~~~~ 488 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTK------------PRYAVNS--VEVKGQQKYLILREIGEDDQDF 488 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCC------------Cceeeee--eeeccccceEEEeecCcccccc
Confidence 3567788999999999999999998654321111110 0112211 112223344555555432 233
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCch-hhHHHHHHHH-HcCCEEEEEEeecCCCCCC
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPMP-QTRFVLKKAL-EFGHAVVVVVNKIDRPSAR 220 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~-~~gip~ivviNKiD~~~~~ 220 (681)
..+-+ ..||.+++++|.+..... .-..+.++.. ...+|+++|..|+|+.+..
T Consensus 489 l~~ke---~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~ 542 (625)
T KOG1707|consen 489 LTSKE---AACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVP 542 (625)
T ss_pred ccCcc---ceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhh
Confidence 32222 679999999998853221 1222222221 2468999999999997653
No 465
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.16 E-value=0.011 Score=65.19 Aligned_cols=30 Identities=27% Similarity=0.356 Sum_probs=26.0
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCc
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKV 115 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~ 115 (681)
+..+++|+|+|+.++|||||+++|....+.
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~ 245 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNT 245 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 446789999999999999999999987554
No 466
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.02 E-value=0.0052 Score=67.77 Aligned_cols=57 Identities=18% Similarity=0.317 Sum_probs=39.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCcc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS 163 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~ 163 (681)
..+|++||-+|+||||+||+|.+...+..... .|-|-...++.+. -.+.|.||||..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~T---------------PGkTKHFQTi~ls---~~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSST---------------PGKTKHFQTIFLS---PSVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecC---------------CCCcceeEEEEcC---CCceecCCCCcc
Confidence 57899999999999999999998654322111 1444444333333 367899999963
No 467
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=0.035 Score=59.46 Aligned_cols=124 Identities=18% Similarity=0.210 Sum_probs=67.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccc------cceeeeeeccchh-hcccceeEEeeeeEE-------------e
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN------QTVKERIMDSNDL-ERERGITILSKNTSI-------------T 148 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~------~~~~~~~~D~~~~-E~erGiTi~~~~~~~-------------~ 148 (681)
.-.|.++|-.|+||||.+-.|.+........ .+...-..|...+ ...-++.++...+.. .
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK 180 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK 180 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH
Confidence 3457899999999999998887542111000 0000111222222 112355555543332 2
Q ss_pred eCCeEEEEEeCCCccc----hhHHHHHHHh--hcceEEEEeeCCCCCchhhHHHHHHHHHcC--CE-EEEEEeecCCC
Q 005713 149 YNDTKINIIDTPGHSD----FGGEVERILN--MVEGVLLVVDSVEGPMPQTRFVLKKALEFG--HA-VVVVVNKIDRP 217 (681)
Q Consensus 149 ~~~~~i~iiDTPGh~d----f~~e~~~~l~--~aD~~llVvDa~~g~~~qt~~~l~~~~~~g--ip-~ivviNKiD~~ 217 (681)
.+++.+.|+||.|.-. ...|+..+.+ ..|-+|+|+||+-|- .-+ .++..++ +- --++++|+|--
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ---aae--~Qa~aFk~~vdvg~vIlTKlDGh 253 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQ---AAE--AQARAFKETVDVGAVILTKLDGH 253 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccH---hHH--HHHHHHHHhhccceEEEEecccC
Confidence 3567899999999422 2233333333 258899999998762 222 2222222 11 35678999953
No 468
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.67 E-value=0.12 Score=49.23 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=20.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
..+|.|.|.+|+|||||+..+...
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHH
Confidence 467999999999999999988753
No 469
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=95.65 E-value=0.013 Score=64.56 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=59.0
Q ss_pred ceeEEeeeeEEee-CCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCC-----------chhhHHHHHHHHHc-
Q 005713 137 GITILSKNTSITY-NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGP-----------MPQTRFVLKKALEF- 203 (681)
Q Consensus 137 GiTi~~~~~~~~~-~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~-----------~~qt~~~l~~~~~~- 203 (681)
.-|.......+.+ ++..+.++|+.|+..-..-|..++..++++|+|++.++-- +..+..++..+...
T Consensus 220 ~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~ 299 (389)
T PF00503_consen 220 VKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNP 299 (389)
T ss_dssp ---SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSG
T ss_pred CCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCc
Confidence 3455566777888 9999999999999888888888899999999999965411 22334445444432
Q ss_pred ---CCEEEEEEeecCCC
Q 005713 204 ---GHAVVVVVNKIDRP 217 (681)
Q Consensus 204 ---gip~ivviNKiD~~ 217 (681)
+.|+||++||+|+.
T Consensus 300 ~~~~~~iil~lnK~D~f 316 (389)
T PF00503_consen 300 WFKNTPIILFLNKIDLF 316 (389)
T ss_dssp GGTTSEEEEEEE-HHHH
T ss_pred ccccCceEEeeecHHHH
Confidence 68999999999963
No 470
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.49 E-value=0.034 Score=51.68 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.4
Q ss_pred EEEEeCCCCcHHHHHHHHHhhcC
Q 005713 92 IAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 92 V~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
|.++|++|+|||||+..|....+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 68999999999999999986644
No 471
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.47 E-value=0.008 Score=60.13 Aligned_cols=68 Identities=21% Similarity=0.218 Sum_probs=39.6
Q ss_pred CeEEEEEeCCCccchh------HHHHHHHhhcceEEE---EeeCCCCCc-----hhhHHHHHHHHHcCCEEEEEEeecCC
Q 005713 151 DTKINIIDTPGHSDFG------GEVERILNMVEGVLL---VVDSVEGPM-----PQTRFVLKKALEFGHAVVVVVNKIDR 216 (681)
Q Consensus 151 ~~~i~iiDTPGh~df~------~e~~~~l~~aD~~ll---VvDa~~g~~-----~qt~~~l~~~~~~gip~ivviNKiD~ 216 (681)
...+.|+|+||+.++. ..+.+.+..-|.-+. ++|+.--.. ....-.+.-......|-+=|+.|+|+
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl 175 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADL 175 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHH
Confidence 3578899999986542 344455555665444 445322111 11112233344567899999999997
Q ss_pred CC
Q 005713 217 PS 218 (681)
Q Consensus 217 ~~ 218 (681)
..
T Consensus 176 ~~ 177 (290)
T KOG1533|consen 176 LK 177 (290)
T ss_pred HH
Confidence 53
No 472
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.42 E-value=0.078 Score=55.45 Aligned_cols=153 Identities=16% Similarity=0.183 Sum_probs=71.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCc----cchh
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH----SDFG 166 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh----~df~ 166 (681)
=|++.|.++|||||++..|....... ... ..+.+.. ...+.... ..|.-.- ..+.
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~--~~~--v~~i~~~-------------~~~~~~~~----y~~~~~Ek~~R~~l~ 61 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEK--GKE--VVIISDD-------------SLGIDRND----YADSKKEKEARGSLK 61 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHT--T----EEEE-TH-------------HHH-TTSS----S--GGGHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhc--CCE--EEEEccc-------------ccccchhh----hhchhhhHHHHHHHH
Confidence 37899999999999999997642110 000 0000100 00011111 1122111 2234
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCC----------C--CcccchhhHHHHHHH
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS----------A--RPDYVINSTFELFIE 234 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~----------~--~~~~~~~ei~~~~~~ 234 (681)
..+.+.++.- .|+++|........-.+++..+++++.+..+|--+++... . -.+++++++...|+.
T Consensus 62 s~v~r~ls~~--~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~ 139 (270)
T PF08433_consen 62 SAVERALSKD--TIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEE 139 (270)
T ss_dssp HHHHHHHTT---SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---
T ss_pred HHHHHhhccC--eEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcC
Confidence 5555665543 5667899888888888999999999999888877777431 1 123445555555544
Q ss_pred hhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHh
Q 005713 235 LNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (681)
Q Consensus 235 l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~ 276 (681)
-.. ...++-|.|-+.. ... ...++.+++.|..
T Consensus 140 P~~-~nrWD~plf~i~~-~~~--------~~~~~~I~~~l~~ 171 (270)
T PF08433_consen 140 PDP-KNRWDSPLFTIDS-SDE--------ELPLEEIWNALFE 171 (270)
T ss_dssp TTS-S-GGGS-SEEEE--TTS-----------HHHHHHHHHH
T ss_pred CCC-CCCccCCeEEEec-CCC--------CCCHHHHHHHHHh
Confidence 332 2234556665542 111 1145666666643
No 473
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.39 E-value=0.1 Score=57.14 Aligned_cols=125 Identities=22% Similarity=0.297 Sum_probs=65.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCcccccc-ceeee-----eeccch-hhcccceeEEeee-------------eEE
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQ-TVKER-----IMDSND-LERERGITILSKN-------------TSI 147 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~-~~~~~-----~~D~~~-~E~erGiTi~~~~-------------~~~ 147 (681)
.+-.|.++|-.|+||||.+..|.+......... -+... ..|... +-.+-|+.++... -.+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 355689999999999999988865422211100 00000 000000 0011122222210 011
Q ss_pred eeCCeEEEEEeCCCcc----chhHHHHHHHh--hcceEEEEeeCCCCCchhhHHHHHHHHHc--CCE-EEEEEeecCCC
Q 005713 148 TYNDTKINIIDTPGHS----DFGGEVERILN--MVEGVLLVVDSVEGPMPQTRFVLKKALEF--GHA-VVVVVNKIDRP 217 (681)
Q Consensus 148 ~~~~~~i~iiDTPGh~----df~~e~~~~l~--~aD~~llVvDa~~g~~~qt~~~l~~~~~~--gip-~ivviNKiD~~ 217 (681)
....+.+.|+||+|-- +...|+..... ..|-+|||+||.-| |.. .+.+..+ .++ .=|+++|+|-.
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---QdA--~~~A~aF~e~l~itGvIlTKlDGd 252 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---QDA--VNTAKAFNEALGITGVILTKLDGD 252 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc---hHH--HHHHHHHhhhcCCceEEEEcccCC
Confidence 2234689999999953 33344444333 35789999998776 332 2333333 244 25678999964
No 474
>PRK01889 GTPase RsgA; Reviewed
Probab=95.36 E-value=0.018 Score=62.74 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
..++++|.+|+|||||++.|+....
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 5799999999999999999997543
No 475
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.35 E-value=0.017 Score=56.17 Aligned_cols=42 Identities=24% Similarity=0.171 Sum_probs=34.0
Q ss_pred ceEEEEeeCCCCCchhhHHHHHH--HHHcCCEEEEEEeecCCCC
Q 005713 177 EGVLLVVDSVEGPMPQTRFVLKK--ALEFGHAVVVVVNKIDRPS 218 (681)
Q Consensus 177 D~~llVvDa~~g~~~qt~~~l~~--~~~~gip~ivviNKiD~~~ 218 (681)
|.+++|+|+..........+.+. +...+.|+|+|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCC
Confidence 78999999998777766666666 4445789999999999964
No 476
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=95.32 E-value=0.064 Score=53.84 Aligned_cols=67 Identities=13% Similarity=0.130 Sum_probs=40.1
Q ss_pred eCCeEEEEEeCCCccchhHHHHHH--HhhcceEEEEeeCCCCCchhhHHHHHHHHHc----CCE-EEEEEeecCC
Q 005713 149 YNDTKINIIDTPGHSDFGGEVERI--LNMVEGVLLVVDSVEGPMPQTRFVLKKALEF----GHA-VVVVVNKIDR 216 (681)
Q Consensus 149 ~~~~~i~iiDTPGh~df~~e~~~~--l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~----gip-~ivviNKiD~ 216 (681)
.+.+.+.||||+|........ .. ++.||.+|++++...--.......++.+.+. +.+ ..+++||+|.
T Consensus 114 ~~~yD~ilID~~g~~~~~~~~-~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~ 187 (212)
T cd02117 114 EDDLDVVLYDVLGDVVCGGFA-MPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNT 187 (212)
T ss_pred ccCCCEEEEecCCCceecccc-cccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCC
Confidence 346899999998865321111 12 2489999999987543222233333334332 444 4589999984
No 477
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.17 E-value=0.12 Score=54.37 Aligned_cols=29 Identities=21% Similarity=0.503 Sum_probs=24.9
Q ss_pred cCCCccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 85 ~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
...+.+|+.|+|++|-|||++++++...-
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 34467899999999999999999998754
No 478
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.05 E-value=0.062 Score=55.40 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=19.0
Q ss_pred EEEEeCCCCcHHHHHHHHHhh
Q 005713 92 IAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 92 V~IiG~~~~GKTTLi~~Ll~~ 112 (681)
|+++|.+|+||||++..|...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 689999999999999999764
No 479
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.05 E-value=0.048 Score=53.05 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=21.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
..+-++|+|.+|+|||||+++|+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 3557899999999999999999865
No 480
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.88 E-value=0.06 Score=52.18 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhc
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
||.|.|.+|+|||||+..++...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 68899999999999999998764
No 481
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=94.84 E-value=0.056 Score=42.30 Aligned_cols=41 Identities=29% Similarity=0.523 Sum_probs=23.3
Q ss_pred hcceEEEEeeCCC--CCch-hhHHHHHHHHHc--CCEEEEEEeecC
Q 005713 175 MVEGVLLVVDSVE--GPMP-QTRFVLKKALEF--GHAVVVVVNKID 215 (681)
Q Consensus 175 ~aD~~llVvDa~~--g~~~-qt~~~l~~~~~~--gip~ivviNKiD 215 (681)
..+.+++++|.++ |... +-...++..+.. +.|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 4678999999886 4322 233444555543 799999999998
No 482
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.80 E-value=0.041 Score=67.48 Aligned_cols=114 Identities=19% Similarity=0.169 Sum_probs=60.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEee-CCeEEEEEeCCCc------
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY-NDTKINIIDTPGH------ 162 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~i~iiDTPGh------ 162 (681)
+=-+|||++|+||||++...-.+ +.+... ....|..... +..++| =...-.+|||.|-
T Consensus 126 PWy~viG~pgsGKTtal~~sgl~-Fpl~~~-------------~~~~~~~~~g-T~~cdwwf~deaVlIDtaGry~~q~s 190 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLNSGLQ-FPLAEQ-------------MGALGLAGPG-TRNCDWWFTDEAVLIDTAGRYITQDS 190 (1188)
T ss_pred CceEEecCCCCCcchHHhccccc-Ccchhh-------------hccccccCCC-CcccCcccccceEEEcCCcceecccC
Confidence 34679999999999988653211 111100 0000111111 122222 2346679999993
Q ss_pred cc--hhHHHHHH---------HhhcceEEEEeeCCCCCc--hhhH-HHH-------HHH---HHcCCEEEEEEeecCCCC
Q 005713 163 SD--FGGEVERI---------LNMVEGVLLVVDSVEGPM--PQTR-FVL-------KKA---LEFGHAVVVVVNKIDRPS 218 (681)
Q Consensus 163 ~d--f~~e~~~~---------l~~aD~~llVvDa~~g~~--~qt~-~~l-------~~~---~~~gip~ivviNKiD~~~ 218 (681)
.+ -..++... .+-.||+|+.+|..+-.. .+.+ .+. ..+ .+..+|+.|++||+|+..
T Consensus 191 ~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 191 ADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred cchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 11 12333322 234799999999776222 2222 111 112 223589999999999863
No 483
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.73 E-value=0.18 Score=45.32 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=22.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCc
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKV 115 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~ 115 (681)
.++.++|++|+||||++..|......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 57899999999999999999886543
No 484
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.72 E-value=0.16 Score=53.93 Aligned_cols=124 Identities=21% Similarity=0.351 Sum_probs=65.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccc------cceeeeeeccchhh-cccceeEEeee-----eEEe-------
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN------QTVKERIMDSNDLE-RERGITILSKN-----TSIT------- 148 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~------~~~~~~~~D~~~~E-~erGiTi~~~~-----~~~~------- 148 (681)
++..|.++|-.|+||||.+..|.+........ -+.+.-.++....= ..-|+.+-... ..+-
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 46678999999999999999887642211100 00000000000000 01133332211 1111
Q ss_pred -eCCeEEEEEeCCCc----cchhHHHHHHHhhc---ce-----EEEEeeCCCCCchhhHHHHHHHHHcC--CE-EEEEEe
Q 005713 149 -YNDTKINIIDTPGH----SDFGGEVERILNMV---EG-----VLLVVDSVEGPMPQTRFVLKKALEFG--HA-VVVVVN 212 (681)
Q Consensus 149 -~~~~~i~iiDTPGh----~df~~e~~~~l~~a---D~-----~llVvDa~~g~~~qt~~~l~~~~~~g--ip-~ivviN 212 (681)
-.++.+.|+||+|- .....++....+.+ +. +++++||.-|-- .+.+++.++ ++ --++++
T Consensus 218 kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn-----al~QAk~F~eav~l~GiIlT 292 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN-----ALSQAKIFNEAVGLDGIILT 292 (340)
T ss_pred HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh-----HHHHHHHHHHhcCCceEEEE
Confidence 14578999999994 34556666555543 33 888889987632 233333332 22 256789
Q ss_pred ecCC
Q 005713 213 KIDR 216 (681)
Q Consensus 213 KiD~ 216 (681)
|+|-
T Consensus 293 KlDg 296 (340)
T COG0552 293 KLDG 296 (340)
T ss_pred eccc
Confidence 9994
No 485
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=94.70 E-value=0.15 Score=57.17 Aligned_cols=81 Identities=20% Similarity=0.201 Sum_probs=67.3
Q ss_pred EEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEE--ecccccc
Q 005713 290 QMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGIDDIQ 367 (681)
Q Consensus 290 ~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~~~~ 367 (681)
.+.+.+++..+..|.++-++|..|+++.|..+.+...+......+|.+|. ..+.+++++.+|.-|+| .+..+++
T Consensus 415 ~~~~r~v~~~~k~g~IaG~~V~~G~ikr~~~v~~~rd~~vi~~G~i~sLk----~~kddv~ev~~G~ecgI~i~~~~di~ 490 (509)
T COG0532 415 LAEVRAVFKLPKVGAIAGCMVTEGVIKRGAPVRVVRDGVVIYEGEVESLK----RFKDDVKEVRKGQECGIAIENYRDIK 490 (509)
T ss_pred ceEEEEEEEcCCCCeEEEEEEecCEEecCCcEEEEeCCeEEEeeEEEeee----ccCccHhHhccCcEEEEEecCcccCC
Confidence 34556677777799999999999999999999999866655567888884 55678999999999999 4678999
Q ss_pred cCCeeec
Q 005713 368 IGETIAD 374 (681)
Q Consensus 368 ~Gdtl~~ 374 (681)
.||+|-.
T Consensus 491 ~gD~le~ 497 (509)
T COG0532 491 EGDILEV 497 (509)
T ss_pred CCCEEEE
Confidence 9999954
No 486
>KOG2484 consensus GTPase [General function prediction only]
Probab=94.59 E-value=0.029 Score=60.32 Aligned_cols=57 Identities=23% Similarity=0.398 Sum_probs=39.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCc
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh 162 (681)
....++|+|-+++||||+||+|.....-..... .|+|-...... -+..|.|+|.||.
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~---------------pGvT~smqeV~---Ldk~i~llDsPgi 307 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRRKACNVGNV---------------PGVTRSMQEVK---LDKKIRLLDSPGI 307 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHhccccCCCC---------------ccchhhhhhee---ccCCceeccCCce
Confidence 456799999999999999999987644221111 15555443332 3468899999996
No 487
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=94.53 E-value=0.15 Score=53.20 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=40.5
Q ss_pred CCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHH----HcCCEE-EEEEeecC
Q 005713 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKAL----EFGHAV-VVVVNKID 215 (681)
Q Consensus 150 ~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~----~~gip~-ivviNKiD 215 (681)
+++.+.||||||...... +..++..||.+|+++.+...........+..+. ..++++ -+++|+.+
T Consensus 116 ~~yD~viIDt~g~~~~~~-~~~~l~~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 116 DDYDVILFDVLGDVVCGG-FAAPLQYADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred ccCCEEEEecCCCcccCc-ccchhhhCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence 357899999998643221 334578899999999875432333333333322 335664 47899976
No 488
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.51 E-value=0.039 Score=44.09 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHHhh
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
..+|.|+.|+|||||++++..-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999764
No 489
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.30 E-value=0.038 Score=54.08 Aligned_cols=106 Identities=19% Similarity=0.155 Sum_probs=55.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCc---cchh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH---SDFG 166 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh---~df~ 166 (681)
.+|+|+|++|+||||+...|....+.. +..+. |....+...+....... + .++|-... .-..
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~-hlstg-----d~~r~~~~~~t~lg~~~-----k----~~i~~g~lv~d~i~~ 65 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLP-HLDTG-----DILRAAIAERTELGEEI-----K----KYIDKGELVPDEIVN 65 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCc-EEcHh-----HHhHhhhccCChHHHHH-----H----HHHHcCCccchHHHH
Confidence 379999999999999999998874332 11110 00111111110000000 0 02333331 1122
Q ss_pred HHHHHHHhhcceE-EEEeeCCCCCchhhHHHHHHHHHcCCEEEEE
Q 005713 167 GEVERILNMVEGV-LLVVDSVEGPMPQTRFVLKKALEFGHAVVVV 210 (681)
Q Consensus 167 ~e~~~~l~~aD~~-llVvDa~~g~~~qt~~~l~~~~~~gip~ivv 210 (681)
+.+...+..+|+. .+++|.......|.+..=+.+.++|.+.-.+
T Consensus 66 ~~v~~rl~~~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v 110 (178)
T COG0563 66 GLVKERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMV 110 (178)
T ss_pred HHHHHHHHhhcccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceE
Confidence 4445556666743 5777877766777776666666767554333
No 490
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.01 E-value=0.13 Score=51.77 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=22.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
....|.+.|.+|+|||+|+.++....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998753
No 491
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=93.99 E-value=0.23 Score=52.58 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=39.6
Q ss_pred CeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHc----CCEE-EEEEeecC
Q 005713 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF----GHAV-VVVVNKID 215 (681)
Q Consensus 151 ~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~----gip~-ivviNKiD 215 (681)
++.+.||||||..... ....++..||.+|+++++..-........++.+... +++. -+++|+.|
T Consensus 115 ~yD~IiIDt~~~l~~~-a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~ 183 (290)
T CHL00072 115 EYDIILFDVLGDVVCG-GFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTS 183 (290)
T ss_pred cCCEEEEecCCcceec-hhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCC
Confidence 5789999999873321 123457789999999987653333333333333222 3443 47889987
No 492
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.93 E-value=0.34 Score=45.33 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.9
Q ss_pred EEEEeCCCCcHHHHHHHHHhhc
Q 005713 92 IAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 92 V~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
++|.|++|+|||||+..++...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998764
No 493
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=93.93 E-value=0.18 Score=52.40 Aligned_cols=37 Identities=19% Similarity=0.167 Sum_probs=24.8
Q ss_pred CeEEEEEeCCCccchhHHH-HHHHhhcceEEEEeeCCC
Q 005713 151 DTKINIIDTPGHSDFGGEV-ERILNMVEGVLLVVDSVE 187 (681)
Q Consensus 151 ~~~i~iiDTPGh~df~~e~-~~~l~~aD~~llVvDa~~ 187 (681)
++.+.||||||.....+.. ..++..+|.+|+++.+..
T Consensus 116 ~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~ 153 (270)
T cd02040 116 DLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM 153 (270)
T ss_pred CCCEEEEecccCcccCCcccccccccccEEEEEecCch
Confidence 5789999999874321111 122346999999998765
No 494
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=93.88 E-value=1.5 Score=48.96 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.4
Q ss_pred EEEEeCCCCcHHHHHHHHHhhc
Q 005713 92 IAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 92 V~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
-+++|..|+|||||++.|.+..
T Consensus 33 HaLLGENGAGKSTLm~iL~G~~ 54 (501)
T COG3845 33 HALLGENGAGKSTLMKILFGLY 54 (501)
T ss_pred EEEeccCCCCHHHHHHHHhCcc
Confidence 4899999999999999998653
No 495
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=93.86 E-value=0.14 Score=52.81 Aligned_cols=61 Identities=23% Similarity=0.301 Sum_probs=52.1
Q ss_pred EEEEEeCC-CccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCC
Q 005713 153 KINIIDTP-GHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDR 216 (681)
Q Consensus 153 ~i~iiDTP-Gh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~ 216 (681)
++.||||| |. .-.+..++..+|.+|+|--.+.--....+..++.+..+|+|..+|+||-+.
T Consensus 165 ~~~IIDsaaG~---gCpVi~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~ 226 (284)
T COG1149 165 DLLIIDSAAGT---GCPVIASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNL 226 (284)
T ss_pred ceeEEecCCCC---CChHHHhhccCCEEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCC
Confidence 68899998 43 446778999999999999887766677888999999999999999999964
No 496
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=93.86 E-value=0.17 Score=48.59 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
+.|+|+|..|+|||||+++|...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999874
No 497
>KOG2484 consensus GTPase [General function prediction only]
Probab=93.85 E-value=0.19 Score=54.28 Aligned_cols=75 Identities=20% Similarity=0.282 Sum_probs=52.4
Q ss_pred EeCCCc-cchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHH-HcC-CEEEEEEeecCCCCCCcccchhhHHHHHH
Q 005713 157 IDTPGH-SDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKAL-EFG-HAVVVVVNKIDRPSARPDYVINSTFELFI 233 (681)
Q Consensus 157 iDTPGh-~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~-~~g-ip~ivviNKiD~~~~~~~~~~~ei~~~~~ 233 (681)
.|-+++ ..|..+....+..+|.+|.|+||.+.......++-+... ..| ...|+|+||+|+.. .+++++-...|.
T Consensus 127 ~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVP---rEv~e~Wl~YLr 203 (435)
T KOG2484|consen 127 LDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVP---REVVEKWLVYLR 203 (435)
T ss_pred ccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCC---HHHHHHHHHHHH
Confidence 344444 457788889999999999999999976655555444443 334 89999999999974 344554444444
Q ss_pred H
Q 005713 234 E 234 (681)
Q Consensus 234 ~ 234 (681)
.
T Consensus 204 ~ 204 (435)
T KOG2484|consen 204 R 204 (435)
T ss_pred h
Confidence 3
No 498
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.83 E-value=0.058 Score=48.58 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhc
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
.|+|.|.+||||||+++.|....
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998764
No 499
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.71 E-value=0.21 Score=47.92 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
+-++|+|..|+|||||+++|+..
T Consensus 3 ~Il~ivG~k~SGKTTLie~lv~~ 25 (161)
T COG1763 3 KILGIVGYKNSGKTTLIEKLVRK 25 (161)
T ss_pred cEEEEEecCCCChhhHHHHHHHH
Confidence 45899999999999999999765
No 500
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.56 E-value=0.22 Score=45.28 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=22.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
..+.+.|.|++|+|||+|+..+....
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999998764
Done!