Query 005713
Match_columns 681
No_of_seqs 635 out of 4071
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 05:21:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005713.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005713hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e3x_A BIPA; MCSG,PSI2, struct 100.0 1E-104 3E-109 830.7 25.2 321 359-681 2-324 (332)
2 4fn5_A EF-G 1, elongation fact 100.0 2.3E-86 7.8E-91 776.0 36.9 456 86-565 10-701 (709)
3 3j25_A Tetracycline resistance 100.0 3.2E-88 1.1E-92 781.9 8.9 455 88-568 1-620 (638)
4 2ywe_A GTP-binding protein LEP 100.0 1.2E-81 4E-86 715.7 38.4 477 86-597 3-518 (600)
5 2rdo_7 EF-G, elongation factor 100.0 4.7E-80 1.6E-84 719.9 48.7 456 86-565 7-695 (704)
6 3cb4_D GTP-binding protein LEP 100.0 4.1E-80 1.4E-84 704.4 41.4 475 87-597 2-513 (599)
7 2xex_A Elongation factor G; GT 100.0 1.7E-79 5.9E-84 714.6 41.4 457 85-565 6-683 (693)
8 1dar_A EF-G, elongation factor 100.0 1.2E-79 4E-84 715.8 34.5 455 87-565 10-684 (691)
9 2dy1_A Elongation factor G; tr 100.0 5.9E-76 2E-80 682.5 40.3 453 86-565 6-654 (665)
10 1n0u_A EF-2, elongation factor 100.0 3.7E-74 1.3E-78 682.2 42.3 472 85-566 15-810 (842)
11 3vqt_A RF-3, peptide chain rel 100.0 7E-69 2.4E-73 608.9 29.4 366 87-475 29-495 (548)
12 3tr5_A RF-3, peptide chain rel 100.0 1.2E-57 4.2E-62 514.3 30.2 407 88-538 12-514 (528)
13 2h5e_A Peptide chain release f 100.0 1.4E-57 5E-62 514.1 30.6 407 88-538 12-515 (529)
14 3j2k_7 ERF3, eukaryotic polype 100.0 5.4E-39 1.9E-43 355.9 29.0 281 87-377 15-328 (439)
15 1d2e_A Elongation factor TU (E 100.0 5.1E-39 1.7E-43 352.0 21.5 280 89-376 3-290 (397)
16 2c78_A Elongation factor TU-A; 100.0 1.2E-38 4.1E-43 350.1 21.8 284 87-376 9-308 (405)
17 1jny_A EF-1-alpha, elongation 100.0 2.5E-38 8.5E-43 350.5 21.8 281 87-377 4-318 (435)
18 1r5b_A Eukaryotic peptide chai 100.0 4.3E-38 1.5E-42 351.3 20.1 281 87-377 41-357 (467)
19 3p26_A Elongation factor 1 alp 100.0 1.7E-37 5.8E-42 348.3 24.0 286 87-377 31-363 (483)
20 3mca_A HBS1, elongation factor 100.0 1.7E-38 5.8E-43 363.4 13.7 281 86-377 174-490 (592)
21 1f60_A Elongation factor EEF1A 100.0 2.3E-37 7.9E-42 344.6 21.0 280 88-377 6-329 (458)
22 1zun_B Sulfate adenylate trans 100.0 3.4E-36 1.2E-40 333.3 28.0 281 88-377 23-327 (434)
23 3avx_A Elongation factor TS, e 100.0 9.9E-37 3.4E-41 360.3 22.2 283 86-377 293-582 (1289)
24 3izq_1 HBS1P, elongation facto 100.0 8.5E-37 2.9E-41 350.2 20.2 287 86-377 164-497 (611)
25 1kk1_A EIF2gamma; initiation o 100.0 3.9E-35 1.3E-39 322.6 23.0 261 86-377 7-317 (410)
26 2elf_A Protein translation elo 100.0 2.9E-35 1E-39 318.5 20.2 237 91-374 23-275 (370)
27 1wb1_A Translation elongation 100.0 1.2E-35 4E-40 332.6 14.1 256 88-373 18-281 (482)
28 1s0u_A EIF-2-gamma, translatio 100.0 2.1E-34 7.3E-39 316.5 22.9 261 86-377 5-315 (408)
29 1g7s_A Translation initiation 100.0 1.7E-34 5.7E-39 329.4 17.4 299 88-422 4-373 (594)
30 3sjy_A Translation initiation 100.0 2E-33 6.8E-38 308.3 23.4 273 86-377 5-309 (403)
31 3izy_P Translation initiation 100.0 2.8E-34 9.6E-39 322.7 8.4 255 88-378 3-261 (537)
32 1zo1_I IF2, translation initia 100.0 1.9E-33 6.4E-38 313.5 12.6 254 88-377 3-259 (501)
33 3qq5_A Small GTP-binding prote 99.8 3.8E-23 1.3E-27 226.6 -5.3 249 86-378 31-327 (423)
34 2lkc_A Translation initiation 99.8 1.3E-20 4.4E-25 180.7 9.9 162 87-278 6-169 (178)
35 4dhe_A Probable GTP-binding pr 99.8 4.7E-20 1.6E-24 184.2 12.7 175 86-284 26-215 (223)
36 2efe_B Small GTP-binding prote 99.8 1.5E-19 5.1E-24 173.8 15.7 162 88-281 11-176 (181)
37 2dyk_A GTP-binding protein; GT 99.8 1.5E-19 5.1E-24 170.2 14.3 153 89-279 1-161 (161)
38 1wf3_A GTP-binding protein; GT 99.8 1.9E-19 6.3E-24 189.5 14.9 158 88-280 6-173 (301)
39 2fg5_A RAB-22B, RAS-related pr 99.8 2.6E-19 8.9E-24 174.9 14.8 163 87-281 21-187 (192)
40 1z0f_A RAB14, member RAS oncog 99.8 3.4E-19 1.2E-23 170.6 15.3 161 86-278 12-176 (179)
41 1r2q_A RAS-related protein RAB 99.8 3.9E-19 1.3E-23 168.4 15.0 160 88-279 5-168 (170)
42 1z0j_A RAB-22, RAS-related pro 99.8 5.7E-19 2E-23 167.5 14.8 160 88-279 5-168 (170)
43 1ek0_A Protein (GTP-binding pr 99.8 8.2E-19 2.8E-23 166.2 15.5 160 89-279 3-168 (170)
44 1zbd_A Rabphilin-3A; G protein 99.8 8.3E-19 2.8E-23 172.4 15.8 160 87-278 6-169 (203)
45 3iev_A GTP-binding protein ERA 99.8 8.8E-19 3E-23 185.0 16.9 164 86-280 7-182 (308)
46 2oil_A CATX-8, RAS-related pro 99.8 4.6E-19 1.6E-23 172.9 13.4 162 85-278 21-186 (193)
47 3tkl_A RAS-related protein RAB 99.8 7.8E-19 2.7E-23 171.1 15.0 160 86-279 13-178 (196)
48 4bas_A ADP-ribosylation factor 99.8 4.6E-19 1.6E-23 173.2 13.1 163 85-279 13-188 (199)
49 3clv_A RAB5 protein, putative; 99.8 1.3E-18 4.6E-23 169.7 16.3 174 86-278 4-202 (208)
50 2y8e_A RAB-protein 6, GH09086P 99.8 8.9E-19 3E-23 167.6 14.3 159 88-280 13-177 (179)
51 1wms_A RAB-9, RAB9, RAS-relate 99.8 9.5E-19 3.3E-23 167.5 14.4 159 87-279 5-173 (177)
52 2hjg_A GTP-binding protein ENG 99.8 1.2E-18 4.2E-23 192.7 17.3 162 87-276 173-345 (436)
53 2il1_A RAB12; G-protein, GDP, 99.8 5.2E-19 1.8E-23 172.9 12.7 162 86-278 23-188 (192)
54 2p5s_A RAS and EF-hand domain 99.8 5.9E-19 2E-23 173.4 13.0 163 86-279 25-196 (199)
55 1svi_A GTP-binding protein YSX 99.8 1.1E-18 3.9E-23 170.0 14.9 161 86-279 20-194 (195)
56 4dkx_A RAS-related protein RAB 99.8 1.1E-18 3.6E-23 174.9 14.9 161 88-280 12-176 (216)
57 3dz8_A RAS-related protein RAB 99.8 4.4E-19 1.5E-23 173.0 11.8 161 86-278 20-184 (191)
58 2gf9_A RAS-related protein RAB 99.8 4.7E-19 1.6E-23 172.4 11.9 161 87-279 20-184 (189)
59 3kkq_A RAS-related protein M-R 99.8 1.3E-18 4.6E-23 167.7 14.9 159 87-278 16-180 (183)
60 1z2a_A RAS-related protein RAB 99.8 6.9E-19 2.3E-23 166.6 12.5 159 88-278 4-165 (168)
61 1zj6_A ADP-ribosylation factor 99.8 2.7E-18 9.2E-23 166.7 17.0 163 87-283 14-181 (187)
62 2bme_A RAB4A, RAS-related prot 99.8 6.4E-19 2.2E-23 170.3 12.3 159 87-279 8-172 (186)
63 1g16_A RAS-related protein SEC 99.8 9.2E-19 3.1E-23 166.1 12.9 157 88-279 2-164 (170)
64 1zd9_A ADP-ribosylation factor 99.8 2.5E-18 8.5E-23 167.3 16.3 160 88-280 21-185 (188)
65 3t1o_A Gliding protein MGLA; G 99.8 7.5E-19 2.6E-23 171.0 12.5 168 87-278 12-190 (198)
66 2fn4_A P23, RAS-related protei 99.8 8.5E-19 2.9E-23 168.1 12.2 159 86-279 6-171 (181)
67 1r8s_A ADP-ribosylation factor 99.8 5.2E-18 1.8E-22 160.2 17.3 156 90-279 1-161 (164)
68 2hup_A RAS-related protein RAB 99.8 1.6E-18 5.6E-23 170.8 14.4 161 85-279 25-192 (201)
69 1ky3_A GTP-binding protein YPT 99.8 7.5E-19 2.6E-23 168.6 11.5 161 86-278 5-176 (182)
70 3bc1_A RAS-related protein RAB 99.8 1.6E-18 5.6E-23 167.9 14.0 161 86-279 8-184 (195)
71 2nzj_A GTP-binding protein REM 99.8 1.8E-18 6E-23 165.1 14.0 159 88-279 3-168 (175)
72 2ew1_A RAS-related protein RAB 99.8 8.9E-19 3.1E-23 173.2 12.3 162 84-279 21-188 (201)
73 2erx_A GTP-binding protein DI- 99.8 3.2E-18 1.1E-22 162.4 15.5 160 89-281 3-168 (172)
74 3tw8_B RAS-related protein RAB 99.8 5.5E-19 1.9E-23 169.4 10.3 161 85-279 5-170 (181)
75 1u8z_A RAS-related protein RAL 99.8 2.5E-18 8.6E-23 162.3 14.7 158 88-278 3-165 (168)
76 2g6b_A RAS-related protein RAB 99.8 1.9E-18 6.6E-23 165.8 14.1 162 87-279 8-173 (180)
77 3t5g_A GTP-binding protein RHE 99.8 4.2E-19 1.4E-23 171.0 9.4 160 88-280 5-169 (181)
78 2fu5_C RAS-related protein RAB 99.8 4.1E-19 1.4E-23 171.4 9.3 159 87-279 6-170 (183)
79 1c1y_A RAS-related protein RAP 99.8 2.4E-18 8.1E-23 162.7 14.3 158 89-278 3-165 (167)
80 1z06_A RAS-related protein RAB 99.8 1.2E-18 4.2E-23 169.4 12.5 161 87-279 18-187 (189)
81 1upt_A ARL1, ADP-ribosylation 99.8 1.9E-18 6.5E-23 164.2 13.5 158 88-279 6-168 (171)
82 2hxs_A RAB-26, RAS-related pro 99.8 1.3E-18 4.6E-23 166.6 12.4 161 87-281 4-174 (178)
83 2a5j_A RAS-related protein RAB 99.8 1.3E-18 4.4E-23 169.7 12.4 159 88-278 20-182 (191)
84 1z08_A RAS-related protein RAB 99.8 9.6E-19 3.3E-23 166.1 11.1 161 87-279 4-168 (170)
85 1vg8_A RAS-related protein RAB 99.8 1E-18 3.5E-23 172.0 11.7 161 87-279 6-174 (207)
86 2h17_A ADP-ribosylation factor 99.8 1.5E-18 5E-23 167.8 12.6 158 86-277 18-180 (181)
87 1x3s_A RAS-related protein RAB 99.8 2.6E-18 9E-23 167.1 14.5 160 88-280 14-178 (195)
88 1kao_A RAP2A; GTP-binding prot 99.8 1.7E-18 5.7E-23 163.4 12.3 157 89-278 3-164 (167)
89 2fh5_B SR-beta, signal recogni 99.8 8.5E-18 2.9E-22 166.8 17.3 167 87-277 5-213 (214)
90 3pqc_A Probable GTP-binding pr 99.8 4.3E-18 1.5E-22 165.3 14.7 160 86-279 20-193 (195)
91 2f7s_A C25KG, RAS-related prot 99.8 2.1E-18 7.1E-23 171.6 12.7 162 86-279 22-198 (217)
92 3oes_A GTPase rhebl1; small GT 99.8 8.9E-19 3.1E-23 172.4 9.9 163 85-280 20-187 (201)
93 4dcu_A GTP-binding protein ENG 99.8 3.5E-18 1.2E-22 190.1 15.7 164 87-278 193-367 (456)
94 3cph_A RAS-related protein SEC 99.8 3.7E-18 1.3E-22 168.8 14.3 158 87-279 18-181 (213)
95 2bcg_Y Protein YP2, GTP-bindin 99.8 2.4E-18 8.3E-23 169.7 12.7 161 87-279 6-170 (206)
96 3gj0_A GTP-binding nuclear pro 99.8 1.5E-18 5.1E-23 173.4 11.2 160 86-279 12-174 (221)
97 2bov_A RAla, RAS-related prote 99.8 7.2E-18 2.5E-22 165.6 15.9 158 87-279 12-176 (206)
98 2wji_A Ferrous iron transport 99.8 3.4E-18 1.2E-22 162.9 13.1 153 89-278 3-163 (165)
99 3q85_A GTP-binding protein REM 99.8 3.1E-18 1.1E-22 162.6 12.5 158 89-278 2-165 (169)
100 2a9k_A RAS-related protein RAL 99.8 6.3E-18 2.2E-22 162.8 14.8 159 88-279 17-180 (187)
101 2ce2_X GTPase HRAS; signaling 99.8 1.1E-17 3.8E-22 157.3 16.1 156 89-278 3-163 (166)
102 2atx_A Small GTP binding prote 99.8 1.5E-18 5.1E-23 169.4 10.4 160 88-280 17-193 (194)
103 4dsu_A GTPase KRAS, isoform 2B 99.8 5.8E-18 2E-22 163.6 14.6 157 89-279 4-165 (189)
104 3reg_A RHO-like small GTPase; 99.8 2.3E-18 7.9E-23 168.2 11.8 163 86-280 20-188 (194)
105 3q72_A GTP-binding protein RAD 99.8 4.1E-18 1.4E-22 161.3 13.2 156 89-278 2-162 (166)
106 3bwd_D RAC-like GTP-binding pr 99.8 7.6E-19 2.6E-23 169.0 8.2 164 87-281 6-182 (182)
107 3iby_A Ferrous iron transport 99.8 1.5E-18 5.3E-23 178.2 11.0 151 90-277 2-164 (256)
108 2h57_A ADP-ribosylation factor 99.8 4.1E-18 1.4E-22 165.8 13.3 161 87-279 19-186 (190)
109 2gf0_A GTP-binding protein DI- 99.8 1.2E-17 4.2E-22 163.0 16.6 161 87-281 6-172 (199)
110 1m2o_B GTP-binding protein SAR 99.8 3.9E-18 1.3E-22 166.6 12.9 159 88-278 22-190 (190)
111 1f6b_A SAR1; gtpases, N-termin 99.8 2.6E-18 8.8E-23 169.1 11.5 159 88-278 24-197 (198)
112 1mh1_A RAC1; GTP-binding, GTPa 99.8 2.1E-18 7.3E-23 166.2 10.7 162 89-282 5-182 (186)
113 2o52_A RAS-related protein RAB 99.8 1.9E-18 6.4E-23 170.2 10.4 162 86-279 22-187 (200)
114 3i8s_A Ferrous iron transport 99.8 1.7E-18 5.7E-23 179.8 10.5 156 89-281 3-170 (274)
115 2gj8_A MNME, tRNA modification 99.7 5.2E-18 1.8E-22 163.1 13.0 152 89-280 4-166 (172)
116 1ega_A Protein (GTP-binding pr 99.7 1.8E-18 6E-23 182.1 10.2 159 88-280 7-175 (301)
117 1ksh_A ARF-like protein 2; sma 99.7 5.9E-18 2E-22 163.8 12.7 159 87-279 16-179 (186)
118 1fzq_A ADP-ribosylation factor 99.7 2E-17 6.9E-22 160.1 16.5 159 87-280 14-178 (181)
119 3q3j_B RHO-related GTP-binding 99.7 3.5E-18 1.2E-22 170.4 11.3 162 88-281 26-204 (214)
120 2b6h_A ADP-ribosylation factor 99.7 1.8E-17 6.2E-22 162.1 16.1 158 87-279 27-190 (192)
121 3cbq_A GTP-binding protein REM 99.7 1.1E-17 3.6E-22 164.4 14.2 164 86-281 20-189 (195)
122 2yc2_C IFT27, small RAB-relate 99.7 2.2E-18 7.5E-23 169.4 8.6 158 88-279 19-191 (208)
123 3a1s_A Iron(II) transport prot 99.7 4.8E-18 1.6E-22 174.8 11.3 155 88-279 4-166 (258)
124 2xtp_A GTPase IMAP family memb 99.7 4.7E-18 1.6E-22 174.5 11.2 167 87-280 20-208 (260)
125 4gzl_A RAS-related C3 botulinu 99.7 4.2E-18 1.4E-22 168.3 10.4 161 87-278 28-203 (204)
126 3cpj_B GTP-binding protein YPT 99.7 3.7E-18 1.3E-22 171.0 10.0 162 86-281 10-177 (223)
127 2j0v_A RAC-like GTP-binding pr 99.7 3.5E-18 1.2E-22 169.3 9.7 165 87-282 7-182 (212)
128 3con_A GTPase NRAS; structural 99.7 1.9E-17 6.7E-22 160.7 14.3 155 89-279 21-182 (190)
129 4djt_A GTP-binding nuclear pro 99.7 3.4E-18 1.2E-22 170.2 9.0 163 86-280 8-175 (218)
130 2wjg_A FEOB, ferrous iron tran 99.7 1.3E-17 4.3E-22 161.6 12.5 157 88-281 6-170 (188)
131 3llu_A RAS-related GTP-binding 99.7 1.3E-17 4.6E-22 163.4 12.7 164 85-278 16-195 (196)
132 3k53_A Ferrous iron transport 99.7 6.4E-18 2.2E-22 175.0 10.6 155 88-279 2-165 (271)
133 3c5c_A RAS-like protein 12; GD 99.7 1.3E-17 4.3E-22 162.4 12.1 158 87-278 19-184 (187)
134 3ihw_A Centg3; RAS, centaurin, 99.7 3.9E-17 1.3E-21 158.7 15.4 154 86-278 17-178 (184)
135 2hjg_A GTP-binding protein ENG 99.7 1.3E-17 4.6E-22 184.3 13.4 154 90-280 4-165 (436)
136 1mky_A Probable GTP-binding pr 99.7 1.9E-17 6.5E-22 183.3 14.5 155 90-280 2-166 (439)
137 2q3h_A RAS homolog gene family 99.7 1.1E-17 3.8E-22 164.1 11.2 162 86-280 17-195 (201)
138 1moz_A ARL1, ADP-ribosylation 99.7 7.2E-18 2.5E-22 162.4 9.4 159 87-279 16-179 (183)
139 2fv8_A H6, RHO-related GTP-bin 99.7 1.1E-17 3.8E-22 165.4 10.7 164 88-282 24-202 (207)
140 2qu8_A Putative nucleolar GTP- 99.7 6.6E-17 2.2E-21 162.5 16.3 164 87-279 27-204 (228)
141 2gco_A H9, RHO-related GTP-bin 99.7 1.4E-17 4.8E-22 163.9 10.8 160 88-278 24-198 (201)
142 2j1l_A RHO-related GTP-binding 99.7 2.4E-17 8.2E-22 164.1 12.5 160 88-279 33-208 (214)
143 3l0i_B RAS-related protein RAB 99.7 3.4E-19 1.2E-23 175.1 -1.3 160 86-279 30-195 (199)
144 2x77_A ADP-ribosylation factor 99.7 7.8E-18 2.7E-22 163.5 8.4 159 87-279 20-183 (189)
145 3b1v_A Ferrous iron uptake tra 99.7 1.5E-17 5.3E-22 172.2 10.7 154 89-280 3-164 (272)
146 2iwr_A Centaurin gamma 1; ANK 99.7 9E-17 3.1E-21 154.1 14.9 155 87-278 5-167 (178)
147 2atv_A RERG, RAS-like estrogen 99.7 9.8E-17 3.4E-21 156.9 15.2 159 87-278 26-189 (196)
148 1m7b_A RND3/RHOE small GTP-bin 99.7 2.2E-17 7.6E-22 159.9 10.1 161 87-278 5-181 (184)
149 3gee_A MNME, tRNA modification 99.7 2.2E-17 7.4E-22 183.9 11.1 155 89-281 233-400 (476)
150 3o47_A ADP-ribosylation factor 99.7 7.9E-17 2.7E-21 171.6 13.7 158 88-279 164-326 (329)
151 3lxw_A GTPase IMAP family memb 99.7 8.1E-17 2.8E-21 164.5 13.2 160 88-279 20-207 (247)
152 1gwn_A RHO-related GTP-binding 99.7 3.9E-17 1.3E-21 161.8 9.9 161 87-278 26-202 (205)
153 2cxx_A Probable GTP-binding pr 99.7 4.9E-17 1.7E-21 157.4 10.3 156 90-279 2-183 (190)
154 4dcu_A GTP-binding protein ENG 99.7 8E-17 2.7E-21 179.1 12.3 156 88-280 22-185 (456)
155 1mky_A Probable GTP-binding pr 99.7 3.2E-16 1.1E-20 173.4 16.5 162 88-278 179-353 (439)
156 3th5_A RAS-related C3 botulinu 99.5 4.2E-18 1.4E-22 167.8 0.0 164 87-277 28-202 (204)
157 3geh_A MNME, tRNA modification 99.7 1.4E-16 4.7E-21 176.8 11.4 154 89-281 224-385 (462)
158 3r7w_A Gtpase1, GTP-binding pr 99.7 3.9E-16 1.3E-20 164.6 14.2 161 89-279 3-180 (307)
159 1xzp_A Probable tRNA modificat 99.7 3.3E-16 1.1E-20 174.5 13.8 152 90-279 244-404 (482)
160 2wkq_A NPH1-1, RAS-related C3 99.6 3.5E-16 1.2E-20 165.4 10.1 161 87-281 153-331 (332)
161 2g3y_A GTP-binding protein GEM 99.6 7.9E-16 2.7E-20 153.4 12.0 160 87-278 35-201 (211)
162 3t5d_A Septin-7; GTP-binding p 99.6 6.8E-16 2.3E-20 160.0 11.8 167 88-280 7-204 (274)
163 3lvq_E ARF-GAP with SH3 domain 99.6 1.1E-15 3.7E-20 171.8 14.1 159 87-280 320-484 (497)
164 2zej_A Dardarin, leucine-rich 99.6 7E-16 2.4E-20 149.5 9.7 163 90-280 3-178 (184)
165 3dpu_A RAB family protein; roc 99.6 1E-15 3.5E-20 173.6 11.1 162 86-281 38-209 (535)
166 2cjw_A GTP-binding protein GEM 99.6 2.7E-15 9.2E-20 146.8 12.1 160 88-278 5-170 (192)
167 2f9l_A RAB11B, member RAS onco 99.6 3.7E-15 1.3E-19 146.3 12.8 158 88-279 4-167 (199)
168 1nrj_B SR-beta, signal recogni 99.6 3.8E-15 1.3E-19 148.0 11.4 146 87-255 10-169 (218)
169 2aka_B Dynamin-1; fusion prote 99.6 8E-15 2.7E-19 153.1 14.5 176 87-277 24-250 (299)
170 2qag_A Septin-2, protein NEDD5 99.6 2.4E-15 8.3E-20 162.0 10.5 197 88-315 36-263 (361)
171 3r7w_B Gtpase2, GTP-binding pr 99.6 7.4E-15 2.5E-19 154.6 12.8 163 91-281 1-175 (331)
172 1lnz_A SPO0B-associated GTP-bi 99.6 1.7E-15 5.8E-20 161.7 7.8 156 89-280 158-330 (342)
173 2qtf_A Protein HFLX, GTP-bindi 99.6 7.3E-15 2.5E-19 158.3 12.8 165 88-283 178-357 (364)
174 3def_A T7I23.11 protein; chlor 99.6 2.7E-14 9.1E-19 147.0 16.2 116 88-218 35-165 (262)
175 3lxx_A GTPase IMAP family memb 99.6 5E-15 1.7E-19 150.0 9.7 166 86-278 26-212 (239)
176 1oix_A RAS-related protein RAB 99.6 1.3E-14 4.4E-19 141.7 12.3 158 87-278 27-190 (191)
177 1jwy_B Dynamin A GTPase domain 99.6 1.1E-14 3.6E-19 153.5 12.3 181 88-280 23-262 (315)
178 2e87_A Hypothetical protein PH 99.5 3.4E-14 1.2E-18 152.8 13.8 157 87-279 165-335 (357)
179 1h65_A Chloroplast outer envel 99.5 3.1E-13 1.1E-17 139.5 18.7 117 88-219 38-169 (270)
180 1pui_A ENGB, probable GTP-bind 99.5 4.7E-14 1.6E-18 139.1 11.3 162 87-280 24-199 (210)
181 2j69_A Bacterial dynamin-like 99.5 1.4E-13 4.8E-18 160.3 13.7 118 152-279 174-324 (695)
182 2p67_A LAO/AO transport system 99.5 6.9E-14 2.4E-18 149.6 8.9 178 85-279 52-260 (341)
183 3p32_A Probable GTPase RV1496/ 99.5 6E-14 2.1E-18 150.8 8.4 173 86-279 76-283 (355)
184 2ged_A SR-beta, signal recogni 99.5 8.5E-14 2.9E-18 135.2 8.4 124 87-230 46-183 (193)
185 3c5h_A Glucocorticoid receptor 99.4 2.6E-14 8.9E-19 146.5 4.2 85 175-278 162-253 (255)
186 2x2e_A Dynamin-1; nitration, h 99.4 2.5E-13 8.4E-18 145.9 9.3 174 87-276 29-254 (353)
187 1wxq_A GTP-binding protein; st 99.4 1.8E-13 6E-18 149.1 5.5 90 90-188 1-114 (397)
188 2wsm_A Hydrogenase expression/ 99.4 3.2E-13 1.1E-17 134.4 5.6 170 87-280 28-214 (221)
189 3t34_A Dynamin-related protein 99.3 1.8E-12 6.1E-17 139.6 10.2 160 88-255 33-246 (360)
190 2qpt_A EH domain-containing pr 99.3 2.4E-12 8.1E-17 145.9 10.3 132 87-218 63-232 (550)
191 3zvr_A Dynamin-1; hydrolase, D 99.3 6.8E-12 2.3E-16 145.5 13.8 173 88-276 50-274 (772)
192 1udx_A The GTP-binding protein 99.3 6.1E-12 2.1E-16 137.4 11.8 156 89-280 157-325 (416)
193 2www_A Methylmalonic aciduria 99.3 6E-12 2E-16 134.9 8.0 114 149-279 164-278 (349)
194 1yrb_A ATP(GTP)binding protein 99.2 2.7E-11 9.2E-16 123.7 7.4 115 151-279 108-256 (262)
195 2qag_C Septin-7; cell cycle, c 99.1 1.1E-10 3.9E-15 127.5 11.0 165 89-279 31-226 (418)
196 1jal_A YCHF protein; nucleotid 99.1 3.1E-10 1E-14 121.4 12.3 82 90-187 3-108 (363)
197 2qnr_A Septin-2, protein NEDD5 99.1 2.4E-10 8.1E-15 119.9 10.0 151 88-254 17-199 (301)
198 4fid_A G protein alpha subunit 99.1 1.9E-10 6.6E-15 121.9 8.0 133 136-278 145-326 (340)
199 2dby_A GTP-binding protein; GD 99.0 6E-10 2.1E-14 119.8 10.2 90 90-187 2-111 (368)
200 2hf9_A Probable hydrogenase ni 99.0 3.7E-10 1.3E-14 112.4 7.8 169 87-278 36-222 (226)
201 3e1y_E Eukaryotic peptide chai 99.0 8.5E-10 2.9E-14 109.0 9.4 84 285-377 3-90 (204)
202 4a9a_A Ribosome-interacting GT 99.0 1.1E-09 3.7E-14 117.9 10.9 116 86-218 69-196 (376)
203 2j37_W Signal recognition part 99.0 2.7E-10 9.3E-15 127.0 5.7 173 87-277 99-310 (504)
204 1cip_A Protein (guanine nucleo 99.0 3E-10 1E-14 121.5 5.3 132 137-278 178-342 (353)
205 2qm8_A GTPase/ATPase; G protei 98.9 5E-10 1.7E-14 119.3 5.6 115 148-279 144-260 (337)
206 1zcb_A G alpha I/13; GTP-bindi 98.8 1.3E-09 4.4E-14 117.1 4.4 130 139-278 188-351 (362)
207 2qag_B Septin-6, protein NEDD5 98.7 6.1E-08 2.1E-12 105.6 11.2 147 85-251 38-217 (427)
208 1azs_C GS-alpha; complex (lyas 98.6 1.1E-08 3.8E-13 110.8 3.6 130 139-278 204-383 (402)
209 3ohm_A Guanine nucleotide-bind 98.6 1.3E-08 4.3E-13 107.5 3.9 132 136-278 151-316 (327)
210 2xtz_A Guanine nucleotide-bind 98.5 2.5E-08 8.6E-13 106.6 3.1 119 150-278 181-343 (354)
211 1u0l_A Probable GTPase ENGC; p 98.5 4.2E-08 1.4E-12 102.7 4.7 103 153-275 64-168 (301)
212 1tq4_A IIGP1, interferon-induc 98.5 6.1E-07 2.1E-11 97.7 13.7 168 88-281 68-254 (413)
213 3ec1_A YQEH GTPase; atnos1, at 98.5 1.5E-08 5.2E-13 109.2 -0.2 117 89-218 162-288 (369)
214 2ohf_A Protein OLA1, GTP-bindi 98.5 1.8E-07 6E-12 101.1 7.4 84 88-187 21-128 (396)
215 3sop_A Neuronal-specific septi 98.5 6.4E-07 2.2E-11 92.2 11.3 123 90-218 3-154 (270)
216 3h2y_A GTPase family protein; 98.4 4.9E-08 1.7E-12 105.1 1.6 117 89-218 160-287 (368)
217 2v3c_C SRP54, signal recogniti 98.3 1.6E-06 5.4E-11 95.2 10.8 126 89-217 99-251 (432)
218 3dm5_A SRP54, signal recogniti 98.2 7.5E-06 2.6E-10 89.6 13.7 154 88-259 99-280 (443)
219 3kl4_A SRP54, signal recogniti 98.2 4.4E-06 1.5E-10 91.3 11.7 151 89-257 97-277 (433)
220 1ni3_A YCHF GTPase, YCHF GTP-b 98.2 2.9E-06 9.8E-11 91.7 9.1 85 88-187 19-127 (392)
221 3l82_B F-box only protein 4; T 98.1 8.2E-06 2.8E-10 79.9 9.7 111 153-279 97-222 (227)
222 2yv5_A YJEQ protein; hydrolase 98.1 1.3E-06 4.6E-11 91.3 4.1 96 162-274 66-163 (302)
223 1puj_A YLQF, conserved hypothe 98.1 5.8E-06 2E-10 85.6 8.1 102 156-279 3-105 (282)
224 1f5n_A Interferon-induced guan 98.0 6.5E-06 2.2E-10 93.3 6.4 108 87-204 36-149 (592)
225 2xxa_A Signal recognition part 97.9 1.9E-05 6.4E-10 86.6 8.8 123 88-217 99-253 (433)
226 1j8m_F SRP54, signal recogniti 97.9 1.8E-05 6.2E-10 82.5 7.6 122 89-217 98-252 (297)
227 3ec1_A YQEH GTPase; atnos1, at 97.8 2.4E-05 8.1E-10 84.1 7.8 109 153-278 50-160 (369)
228 1xe1_A Hypothetical protein PF 97.8 8E-05 2.7E-09 65.4 9.4 78 287-374 33-113 (116)
229 3l2o_B F-box only protein 4; s 97.8 8.3E-05 2.8E-09 76.2 10.6 105 160-280 195-308 (312)
230 3h2y_A GTPase family protein; 97.7 3E-05 1E-09 83.3 6.0 100 161-278 55-158 (368)
231 1puj_A YLQF, conserved hypothe 97.7 4.3E-05 1.5E-09 79.0 6.1 59 88-164 119-177 (282)
232 3cnl_A YLQF, putative uncharac 97.6 2.2E-05 7.6E-10 80.3 3.6 94 159-277 4-98 (262)
233 4dzz_A Plasmid partitioning pr 97.6 0.00011 3.6E-09 71.4 7.6 65 150-217 74-143 (206)
234 3e70_C DPA, signal recognition 97.5 0.00028 9.7E-09 74.4 10.7 152 88-257 128-307 (328)
235 3szr_A Interferon-induced GTP- 97.5 0.00031 1.1E-08 80.3 10.9 68 152-219 147-229 (608)
236 3cnl_A YLQF, putative uncharac 97.4 5.4E-05 1.8E-09 77.4 3.3 58 90-165 100-157 (262)
237 1d1n_A Initiation factor 2; be 97.3 0.00047 1.6E-08 58.8 6.9 81 291-375 9-91 (99)
238 1zu4_A FTSY; GTPase, signal re 97.2 0.00049 1.7E-08 72.4 8.1 121 88-217 104-267 (320)
239 2yhs_A FTSY, cell division pro 97.2 0.00047 1.6E-08 76.1 8.2 123 89-216 293-450 (503)
240 2ffh_A Protein (FFH); SRP54, s 97.2 0.00069 2.4E-08 73.8 8.4 125 88-217 97-250 (425)
241 1t9h_A YLOQ, probable GTPase E 97.1 0.00041 1.4E-08 72.4 5.8 77 172-255 83-162 (307)
242 1rj9_A FTSY, signal recognitio 97.0 0.0016 5.5E-08 67.8 8.9 125 88-217 101-260 (304)
243 3cwq_A Para family chromosome 97.0 0.00072 2.5E-08 66.3 5.9 121 91-218 2-134 (209)
244 1vma_A Cell division protein F 97.0 0.0012 4E-08 68.9 7.6 24 89-112 104-127 (306)
245 2crv_A IF-2MT, translation ini 97.0 0.0026 8.9E-08 56.1 8.5 83 290-376 12-100 (120)
246 3q5d_A Atlastin-1; G protein, 96.9 0.0023 7.8E-08 70.1 9.7 105 87-202 65-195 (447)
247 2px0_A Flagellar biosynthesis 96.9 0.0013 4.3E-08 68.4 7.3 125 88-217 104-252 (296)
248 1ls1_A Signal recognition part 96.6 0.0034 1.1E-07 65.1 7.3 123 88-217 97-250 (295)
249 3k9g_A PF-32 protein; ssgcid, 96.5 0.012 4E-07 59.5 10.7 65 150-216 143-209 (267)
250 2oze_A ORF delta'; para, walke 96.4 0.0066 2.2E-07 62.5 8.7 65 151-217 154-225 (298)
251 3kjh_A CO dehydrogenase/acetyl 96.3 0.0015 5E-08 65.1 2.9 65 149-215 129-194 (254)
252 2rcn_A Probable GTPase ENGC; Y 96.3 0.0047 1.6E-07 65.6 6.6 76 172-255 127-204 (358)
253 3end_A Light-independent proto 96.3 0.006 2E-07 63.2 7.1 65 150-215 155-224 (307)
254 3b9q_A Chloroplast SRP recepto 96.1 0.013 4.4E-07 60.9 8.4 124 89-217 100-259 (302)
255 1zo1_I IF2, translation initia 96.0 0.013 4.4E-07 65.2 8.4 105 267-375 384-493 (501)
256 1bif_A 6-phosphofructo-2-kinas 96.0 0.003 1E-07 69.8 3.2 108 88-211 38-156 (469)
257 2og2_A Putative signal recogni 95.7 0.028 9.6E-07 59.8 9.5 124 89-217 157-316 (359)
258 3izy_P Translation initiation 95.3 0.051 1.8E-06 60.8 9.9 103 267-373 423-534 (537)
259 2ph1_A Nucleotide-binding prot 95.2 0.034 1.2E-06 56.1 7.6 67 150-216 127-194 (262)
260 1t9h_A YLOQ, probable GTPase E 94.5 0.011 3.9E-07 61.4 1.8 24 89-112 173-196 (307)
261 2rcn_A Probable GTPase ENGC; Y 94.4 0.02 6.8E-07 60.8 3.6 24 90-113 216-239 (358)
262 4ido_A Atlastin-1; GTPase, GTP 94.3 0.17 5.8E-06 55.2 10.6 113 87-202 65-195 (457)
263 2yv5_A YJEQ protein; hydrolase 94.1 0.048 1.6E-06 56.5 5.6 21 90-110 166-186 (302)
264 1wcv_1 SOJ, segregation protei 94.0 0.1 3.5E-06 52.3 7.8 66 150-217 110-182 (257)
265 1cp2_A CP2, nitrogenase iron p 94.0 0.095 3.2E-06 52.7 7.4 66 151-216 115-186 (269)
266 1ye8_A Protein THEP1, hypothet 94.0 0.031 1E-06 53.2 3.5 24 91-114 2-25 (178)
267 1g3q_A MIND ATPase, cell divis 93.9 0.11 3.9E-06 50.9 7.7 65 151-217 111-176 (237)
268 1lvg_A Guanylate kinase, GMP k 93.9 0.028 9.4E-07 54.3 3.0 23 90-112 5-27 (198)
269 3bfv_A CAPA1, CAPB2, membrane 93.8 0.11 3.7E-06 52.9 7.5 65 152-217 192-257 (271)
270 1kgd_A CASK, peripheral plasma 93.8 0.035 1.2E-06 52.6 3.5 24 90-113 6-29 (180)
271 3zvl_A Bifunctional polynucleo 93.4 0.3 1E-05 52.8 10.6 90 88-215 257-346 (416)
272 2yvu_A Probable adenylyl-sulfa 93.3 0.52 1.8E-05 44.3 11.0 26 88-113 12-37 (186)
273 1zp6_A Hypothetical protein AT 93.3 0.053 1.8E-06 51.4 3.9 25 88-112 8-32 (191)
274 1hyq_A MIND, cell division inh 93.1 0.12 4E-06 51.8 6.3 65 151-217 110-175 (263)
275 1znw_A Guanylate kinase, GMP k 93.1 0.046 1.6E-06 53.0 3.2 25 89-113 20-44 (207)
276 3n70_A Transport activator; si 93.1 0.3 1E-05 44.2 8.5 26 88-113 23-48 (145)
277 1jbk_A CLPB protein; beta barr 93.0 0.2 6.8E-06 46.5 7.4 25 88-112 42-66 (195)
278 2kjq_A DNAA-related protein; s 93.0 0.31 1E-05 44.7 8.5 25 89-113 36-60 (149)
279 3a00_A Guanylate kinase, GMP k 93.0 0.048 1.6E-06 51.9 3.1 24 90-113 2-25 (186)
280 3asz_A Uridine kinase; cytidin 93.0 0.06 2E-06 52.0 3.8 25 88-112 5-29 (211)
281 3tr0_A Guanylate kinase, GMP k 93.0 0.05 1.7E-06 52.1 3.2 24 90-113 8-31 (205)
282 3ney_A 55 kDa erythrocyte memb 92.9 0.065 2.2E-06 51.9 3.9 27 87-113 17-43 (197)
283 3bos_A Putative DNA replicatio 92.9 0.099 3.4E-06 51.0 5.3 26 88-113 51-76 (242)
284 3c8u_A Fructokinase; YP_612366 92.7 0.063 2.2E-06 52.0 3.6 25 88-112 21-45 (208)
285 1z6g_A Guanylate kinase; struc 92.7 0.055 1.9E-06 53.1 3.2 25 89-113 23-47 (218)
286 4eun_A Thermoresistant glucoki 92.5 0.076 2.6E-06 51.1 3.7 28 87-114 27-54 (200)
287 1s96_A Guanylate kinase, GMP k 92.4 0.066 2.3E-06 52.7 3.2 25 89-113 16-40 (219)
288 1htw_A HI0065; nucleotide-bind 92.4 0.069 2.4E-06 49.8 3.2 25 89-113 33-57 (158)
289 2chg_A Replication factor C sm 92.4 0.31 1.1E-05 46.3 8.0 24 89-112 38-61 (226)
290 2cvh_A DNA repair and recombin 92.3 0.93 3.2E-05 43.4 11.5 23 89-111 20-42 (220)
291 3lh2_S 4E10_1VI7A_S0_002_N (T8 92.3 0.095 3.2E-06 42.4 3.5 63 485-550 8-70 (76)
292 2p5t_B PEZT; postsegregational 92.2 0.44 1.5E-05 47.6 9.1 26 88-113 31-56 (253)
293 2j41_A Guanylate kinase; GMP, 92.1 0.092 3.1E-06 50.3 3.8 25 89-113 6-30 (207)
294 3q9l_A Septum site-determining 92.1 0.16 5.4E-06 50.6 5.6 64 151-216 113-185 (260)
295 4fcw_A Chaperone protein CLPB; 92.0 0.33 1.1E-05 49.5 8.2 24 90-113 48-71 (311)
296 3la6_A Tyrosine-protein kinase 92.0 0.24 8.1E-06 50.8 6.9 66 152-218 202-268 (286)
297 3tau_A Guanylate kinase, GMP k 91.9 0.1 3.6E-06 50.5 4.0 25 89-113 8-32 (208)
298 3cio_A ETK, tyrosine-protein k 91.9 0.25 8.7E-06 50.9 7.1 65 152-217 214-279 (299)
299 4gp7_A Metallophosphoesterase; 91.8 0.079 2.7E-06 49.7 2.9 21 90-110 10-30 (171)
300 1kag_A SKI, shikimate kinase I 91.8 0.088 3E-06 48.9 3.2 25 90-114 5-29 (173)
301 3a4m_A L-seryl-tRNA(SEC) kinas 91.7 0.61 2.1E-05 46.8 9.6 24 89-112 4-27 (260)
302 2f1r_A Molybdopterin-guanine d 91.7 0.058 2E-06 51.0 1.8 23 90-112 3-25 (171)
303 3tif_A Uncharacterized ABC tra 91.7 0.07 2.4E-06 53.1 2.5 23 90-112 32-54 (235)
304 1ex7_A Guanylate kinase; subst 91.7 0.088 3E-06 50.5 3.1 24 90-113 2-25 (186)
305 1knq_A Gluconate kinase; ALFA/ 91.6 0.12 4.1E-06 48.2 3.9 26 89-114 8-33 (175)
306 2pcj_A ABC transporter, lipopr 91.6 0.079 2.7E-06 52.3 2.7 23 90-112 31-53 (224)
307 1np6_A Molybdopterin-guanine d 91.5 0.11 3.9E-06 49.1 3.6 24 89-112 6-29 (174)
308 3kb2_A SPBC2 prophage-derived 91.4 0.11 3.6E-06 48.1 3.3 25 90-114 2-26 (173)
309 1fnn_A CDC6P, cell division co 91.3 0.77 2.6E-05 48.2 10.3 24 90-113 45-68 (389)
310 2onk_A Molybdate/tungstate ABC 91.3 0.099 3.4E-06 52.2 3.1 23 90-112 25-47 (240)
311 2b8t_A Thymidine kinase; deoxy 91.3 0.38 1.3E-05 47.5 7.2 42 177-218 89-130 (223)
312 1xjc_A MOBB protein homolog; s 91.2 0.13 4.4E-06 48.6 3.6 24 89-112 4-27 (169)
313 3lw7_A Adenylate kinase relate 91.1 0.13 4.3E-06 47.4 3.5 24 90-114 2-25 (179)
314 3pfi_A Holliday junction ATP-d 91.0 0.69 2.4E-05 47.9 9.4 26 88-113 54-79 (338)
315 2bdt_A BH3686; alpha-beta prot 90.9 0.13 4.3E-06 48.8 3.4 21 91-111 4-24 (189)
316 3b85_A Phosphate starvation-in 90.9 0.11 3.6E-06 50.8 2.8 23 90-112 23-45 (208)
317 2cbz_A Multidrug resistance-as 90.9 0.1 3.5E-06 51.9 2.8 23 90-112 32-54 (237)
318 2eyu_A Twitching motility prot 90.8 0.13 4.3E-06 52.1 3.4 25 88-112 24-48 (261)
319 2qor_A Guanylate kinase; phosp 90.8 0.13 4.3E-06 49.6 3.3 25 89-113 12-36 (204)
320 2v9p_A Replication protein E1; 90.8 0.12 4.2E-06 53.5 3.3 28 86-113 123-150 (305)
321 1b0u_A Histidine permease; ABC 90.8 0.099 3.4E-06 52.9 2.6 23 90-112 33-55 (262)
322 2d2e_A SUFC protein; ABC-ATPas 90.8 0.12 4E-06 52.0 3.0 23 90-112 30-52 (250)
323 2pze_A Cystic fibrosis transme 90.8 0.11 3.7E-06 51.5 2.8 23 90-112 35-57 (229)
324 1mv5_A LMRA, multidrug resista 90.7 0.11 3.8E-06 51.9 2.8 24 89-112 28-51 (243)
325 1g6h_A High-affinity branched- 90.7 0.1 3.5E-06 52.6 2.5 23 90-112 34-56 (257)
326 2i3b_A HCR-ntpase, human cance 90.7 0.12 4.2E-06 49.6 3.0 23 91-113 3-25 (189)
327 3gfo_A Cobalt import ATP-bindi 90.7 0.1 3.5E-06 53.2 2.6 23 90-112 35-57 (275)
328 4g1u_C Hemin import ATP-bindin 90.6 0.1 3.4E-06 53.0 2.5 23 90-112 38-60 (266)
329 1g7s_A Translation initiation 90.6 0.71 2.4E-05 52.3 9.7 73 295-375 472-549 (594)
330 3hr8_A Protein RECA; alpha and 90.6 0.91 3.1E-05 48.0 9.9 24 89-112 61-84 (356)
331 1sgw_A Putative ABC transporte 90.6 0.11 3.7E-06 51.0 2.6 23 90-112 36-58 (214)
332 2v1u_A Cell division control p 90.6 0.58 2E-05 49.0 8.5 26 87-112 42-67 (387)
333 2ff7_A Alpha-hemolysin translo 90.5 0.11 3.9E-06 52.0 2.8 23 90-112 36-58 (247)
334 2if2_A Dephospho-COA kinase; a 90.5 0.16 5.4E-06 48.7 3.6 22 90-111 2-23 (204)
335 1ji0_A ABC transporter; ATP bi 90.4 0.11 3.8E-06 51.8 2.5 23 90-112 33-55 (240)
336 3vaa_A Shikimate kinase, SK; s 90.4 0.16 5.5E-06 48.7 3.6 27 88-114 24-50 (199)
337 1cke_A CK, MSSA, protein (cyti 90.4 0.15 5.2E-06 49.6 3.5 24 90-113 6-29 (227)
338 3uie_A Adenylyl-sulfate kinase 90.4 0.2 6.7E-06 48.1 4.2 26 88-113 24-49 (200)
339 3aez_A Pantothenate kinase; tr 90.4 0.18 6E-06 52.5 4.1 26 87-112 88-113 (312)
340 2zu0_C Probable ATP-dependent 90.3 0.14 4.6E-06 52.1 3.1 23 90-112 47-69 (267)
341 2ghi_A Transport protein; mult 90.3 0.12 4.2E-06 52.2 2.8 23 90-112 47-69 (260)
342 2bbw_A Adenylate kinase 4, AK4 90.3 0.16 5.6E-06 50.4 3.6 26 89-114 27-52 (246)
343 3t61_A Gluconokinase; PSI-biol 90.2 0.16 5.6E-06 48.6 3.5 26 89-114 18-43 (202)
344 2olj_A Amino acid ABC transpor 90.2 0.12 4.1E-06 52.4 2.6 24 89-112 50-73 (263)
345 3ug7_A Arsenical pump-driving 90.2 0.96 3.3E-05 47.5 9.7 42 176-217 237-279 (349)
346 4a74_A DNA repair and recombin 90.1 0.16 5.4E-06 49.3 3.3 23 90-112 26-48 (231)
347 1ly1_A Polynucleotide kinase; 90.1 0.18 6E-06 47.0 3.5 22 90-111 3-24 (181)
348 3ec2_A DNA replication protein 90.0 0.14 4.8E-06 48.1 2.8 24 89-112 38-61 (180)
349 1vpl_A ABC transporter, ATP-bi 90.0 0.13 4.3E-06 52.0 2.6 23 90-112 42-64 (256)
350 1hqc_A RUVB; extended AAA-ATPa 90.0 1.2 4.1E-05 45.6 10.2 25 89-113 38-62 (324)
351 2qi9_C Vitamin B12 import ATP- 90.0 0.14 4.7E-06 51.5 2.8 23 90-112 27-49 (249)
352 1y63_A LMAJ004144AAA protein; 89.9 0.21 7.3E-06 47.2 4.0 25 88-112 9-33 (184)
353 2vhj_A Ntpase P4, P4; non- hyd 89.9 0.56 1.9E-05 48.9 7.3 23 90-112 124-146 (331)
354 2ixe_A Antigen peptide transpo 89.9 0.14 4.8E-06 52.1 2.8 23 90-112 46-68 (271)
355 2ehv_A Hypothetical protein PH 89.8 0.16 5.4E-06 50.0 3.1 22 90-111 31-52 (251)
356 1sxj_A Activator 1 95 kDa subu 89.8 0.96 3.3E-05 50.2 9.8 25 89-113 77-101 (516)
357 1nks_A Adenylate kinase; therm 89.8 0.2 6.8E-06 47.1 3.6 24 90-113 2-25 (194)
358 2jaq_A Deoxyguanosine kinase; 89.8 0.18 6.3E-06 47.9 3.4 24 91-114 2-25 (205)
359 1byi_A Dethiobiotin synthase; 89.8 0.65 2.2E-05 44.9 7.5 68 150-217 107-180 (224)
360 3trf_A Shikimate kinase, SK; a 89.7 0.18 6.3E-06 47.3 3.4 26 89-114 5-30 (185)
361 2yz2_A Putative ABC transporte 89.7 0.14 4.6E-06 52.0 2.5 23 90-112 34-56 (266)
362 2ihy_A ABC transporter, ATP-bi 89.7 0.15 5E-06 52.2 2.8 23 90-112 48-70 (279)
363 2bjv_A PSP operon transcriptio 89.7 1.7 5.9E-05 43.2 10.8 25 89-113 29-53 (265)
364 1qhx_A CPT, protein (chloramph 89.6 0.21 7.3E-06 46.5 3.7 25 90-114 4-28 (178)
365 3lnc_A Guanylate kinase, GMP k 89.6 0.11 3.9E-06 51.0 1.8 24 89-112 27-51 (231)
366 2nq2_C Hypothetical ABC transp 89.6 0.14 4.8E-06 51.5 2.5 23 90-112 32-54 (253)
367 1zd8_A GTP:AMP phosphotransfer 89.6 0.22 7.6E-06 48.7 3.9 26 89-114 7-32 (227)
368 2wbm_A MTHSBDS, ribosome matur 89.6 0.62 2.1E-05 46.4 7.1 66 485-552 185-250 (252)
369 2qt1_A Nicotinamide riboside k 89.6 0.24 8.2E-06 47.6 4.1 26 87-112 19-44 (207)
370 3ea0_A ATPase, para family; al 89.6 0.33 1.1E-05 47.7 5.2 65 151-217 118-185 (245)
371 1jjv_A Dephospho-COA kinase; P 89.5 0.19 6.5E-06 48.2 3.3 22 90-111 3-24 (206)
372 2xj4_A MIPZ; replication, cell 89.4 0.14 4.8E-06 52.3 2.4 65 151-218 103-192 (286)
373 3tqc_A Pantothenate kinase; bi 89.4 0.23 8E-06 51.8 4.0 26 87-112 90-115 (321)
374 2jeo_A Uridine-cytidine kinase 89.3 0.23 7.8E-06 49.4 3.8 27 88-114 24-50 (245)
375 1odf_A YGR205W, hypothetical 3 89.3 0.24 8.1E-06 50.9 4.0 26 87-112 29-54 (290)
376 1uf9_A TT1252 protein; P-loop, 89.2 0.26 8.9E-06 46.8 4.0 25 88-112 7-31 (203)
377 1ukz_A Uridylate kinase; trans 89.2 0.27 9.4E-06 46.9 4.2 28 87-114 13-40 (203)
378 1nij_A Hypothetical protein YJ 89.1 0.19 6.6E-06 52.2 3.2 26 88-113 3-28 (318)
379 2gza_A Type IV secretion syste 89.0 0.18 6.1E-06 53.5 2.9 25 89-113 175-199 (361)
380 2rhm_A Putative kinase; P-loop 89.0 0.26 8.9E-06 46.4 3.8 25 89-113 5-29 (193)
381 3nh6_A ATP-binding cassette SU 88.9 0.13 4.4E-06 53.4 1.6 24 89-112 80-103 (306)
382 2pjz_A Hypothetical protein ST 88.9 0.19 6.4E-06 50.9 2.8 24 90-113 31-54 (263)
383 3dl0_A Adenylate kinase; phosp 88.8 0.25 8.5E-06 47.8 3.6 24 91-114 2-25 (216)
384 1lw7_A Transcriptional regulat 88.8 0.19 6.6E-06 53.2 3.0 25 89-113 170-194 (365)
385 1rz3_A Hypothetical protein rb 88.8 0.3 1E-05 46.9 4.1 25 88-112 21-45 (201)
386 3kta_A Chromosome segregation 88.8 0.24 8.1E-06 46.4 3.3 24 91-114 28-51 (182)
387 3iij_A Coilin-interacting nucl 88.8 0.25 8.7E-06 46.2 3.5 27 88-114 10-36 (180)
388 2bbs_A Cystic fibrosis transme 88.8 0.19 6.6E-06 51.6 2.9 23 90-112 65-87 (290)
389 1qf9_A UMP/CMP kinase, protein 88.8 0.3 1E-05 45.8 4.1 26 89-114 6-31 (194)
390 3fb4_A Adenylate kinase; psych 88.8 0.23 7.9E-06 48.0 3.3 24 91-114 2-25 (216)
391 3fvq_A Fe(3+) IONS import ATP- 88.7 0.21 7.2E-06 52.9 3.2 24 90-113 31-54 (359)
392 1kht_A Adenylate kinase; phosp 88.7 0.25 8.7E-06 46.3 3.5 24 90-113 4-27 (192)
393 3tui_C Methionine import ATP-b 88.6 0.21 7.3E-06 53.0 3.1 23 90-112 55-77 (366)
394 3jvv_A Twitching mobility prot 88.6 0.23 7.9E-06 52.6 3.4 23 90-112 124-146 (356)
395 1sq5_A Pantothenate kinase; P- 88.5 0.29 1E-05 50.6 4.1 26 87-112 78-103 (308)
396 1nn5_A Similar to deoxythymidy 88.5 0.3 1E-05 46.8 4.0 25 88-112 8-32 (215)
397 3cm0_A Adenylate kinase; ATP-b 88.5 0.26 8.7E-06 46.3 3.4 25 89-113 4-28 (186)
398 1u0l_A Probable GTPase ENGC; p 88.5 0.19 6.4E-06 51.9 2.6 24 90-113 170-193 (301)
399 1via_A Shikimate kinase; struc 88.4 0.23 7.9E-06 46.3 3.0 25 90-114 5-29 (175)
400 4e22_A Cytidylate kinase; P-lo 88.4 0.31 1E-05 48.8 4.0 26 89-114 27-52 (252)
401 1tev_A UMP-CMP kinase; ploop, 88.3 0.27 9.4E-06 46.2 3.5 26 89-114 3-28 (196)
402 2c95_A Adenylate kinase 1; tra 88.3 0.32 1.1E-05 45.9 3.9 26 89-114 9-34 (196)
403 2pt7_A CAG-ALFA; ATPase, prote 88.1 1.8 6.2E-05 45.1 9.9 24 90-113 172-195 (330)
404 2ewv_A Twitching motility prot 88.0 0.26 8.7E-06 52.6 3.3 24 89-112 136-159 (372)
405 1z47_A CYSA, putative ABC-tran 88.0 0.24 8.1E-06 52.5 3.0 23 90-112 42-64 (355)
406 3syl_A Protein CBBX; photosynt 88.0 1.7 5.7E-05 44.2 9.5 28 86-113 64-91 (309)
407 2yyz_A Sugar ABC transporter, 87.9 0.25 8.4E-06 52.4 3.0 23 90-112 30-52 (359)
408 1u94_A RECA protein, recombina 87.8 1.4 4.7E-05 46.5 8.9 24 89-112 63-86 (356)
409 1d2n_A N-ethylmaleimide-sensit 87.8 1.1 3.7E-05 44.9 7.8 26 87-112 62-87 (272)
410 2it1_A 362AA long hypothetical 87.8 0.25 8.7E-06 52.4 3.1 23 90-112 30-52 (362)
411 3rlf_A Maltose/maltodextrin im 87.7 0.26 8.8E-06 52.7 3.1 24 90-113 30-53 (381)
412 1t95_A Hypothetical protein AF 87.7 0.69 2.4E-05 45.8 5.9 66 485-552 170-235 (240)
413 2cdn_A Adenylate kinase; phosp 87.6 0.37 1.3E-05 46.0 3.9 27 88-114 19-45 (201)
414 2plr_A DTMP kinase, probable t 87.5 0.35 1.2E-05 46.2 3.7 25 90-114 5-29 (213)
415 1g29_1 MALK, maltose transport 87.5 0.26 9E-06 52.5 3.0 23 90-112 30-52 (372)
416 1v43_A Sugar-binding transport 87.5 0.27 9.2E-06 52.4 3.1 23 90-112 38-60 (372)
417 2x8a_A Nuclear valosin-contain 87.5 0.39 1.3E-05 48.7 4.2 25 89-113 44-68 (274)
418 1gtv_A TMK, thymidylate kinase 87.5 0.17 5.9E-06 48.6 1.4 23 91-113 2-24 (214)
419 2v54_A DTMP kinase, thymidylat 87.4 0.39 1.3E-05 45.7 3.9 25 89-113 4-28 (204)
420 2bwj_A Adenylate kinase 5; pho 87.4 0.35 1.2E-05 45.8 3.5 26 89-114 12-37 (199)
421 3tlx_A Adenylate kinase 2; str 87.3 0.46 1.6E-05 47.2 4.5 27 88-114 28-54 (243)
422 1ojl_A Transcriptional regulat 87.2 1.3 4.4E-05 45.5 8.0 25 89-113 25-49 (304)
423 2oap_1 GSPE-2, type II secreti 87.2 0.25 8.5E-06 55.0 2.7 25 89-113 260-284 (511)
424 2axn_A 6-phosphofructo-2-kinas 87.1 2.1 7.3E-05 47.5 10.2 40 176-215 117-156 (520)
425 3fkq_A NTRC-like two-domain pr 87.1 0.22 7.7E-06 52.9 2.2 36 150-187 258-293 (373)
426 1aky_A Adenylate kinase; ATP:A 87.1 0.37 1.3E-05 46.7 3.7 25 89-113 4-28 (220)
427 2orw_A Thymidine kinase; TMTK, 87.1 1.8 6.3E-05 40.9 8.5 40 177-216 76-115 (184)
428 1zak_A Adenylate kinase; ATP:A 87.1 0.35 1.2E-05 47.0 3.5 26 89-114 5-30 (222)
429 2wwf_A Thymidilate kinase, put 87.0 0.4 1.4E-05 45.9 3.8 24 89-112 10-33 (212)
430 3co5_A Putative two-component 87.0 1.1 3.7E-05 40.4 6.5 24 89-112 27-50 (143)
431 3io5_A Recombination and repai 86.9 3.1 0.00011 43.2 10.6 22 91-112 30-51 (333)
432 1uj2_A Uridine-cytidine kinase 86.8 0.41 1.4E-05 47.7 3.8 27 88-114 21-47 (252)
433 2zr9_A Protein RECA, recombina 86.8 1 3.5E-05 47.4 7.1 24 89-112 61-84 (349)
434 1sxj_E Activator 1 40 kDa subu 86.8 3.2 0.00011 43.0 10.9 24 89-112 36-59 (354)
435 3d31_A Sulfate/molybdate ABC t 86.7 0.24 8.1E-06 52.4 2.1 23 90-112 27-49 (348)
436 1gvn_B Zeta; postsegregational 86.6 0.39 1.3E-05 49.1 3.6 26 88-113 32-57 (287)
437 3gd7_A Fusion complex of cysti 86.6 0.33 1.1E-05 52.1 3.2 23 90-112 48-70 (390)
438 2pt5_A Shikimate kinase, SK; a 86.6 0.38 1.3E-05 44.2 3.3 24 91-114 2-25 (168)
439 2vli_A Antibiotic resistance p 86.6 0.32 1.1E-05 45.4 2.8 26 89-114 5-30 (183)
440 1zuh_A Shikimate kinase; alpha 86.5 0.39 1.3E-05 44.3 3.3 27 88-114 6-32 (168)
441 1e4v_A Adenylate kinase; trans 86.4 0.4 1.4E-05 46.3 3.5 23 91-113 2-24 (214)
442 2ze6_A Isopentenyl transferase 86.4 0.39 1.3E-05 48.1 3.4 25 90-114 2-26 (253)
443 1p9r_A General secretion pathw 86.4 0.36 1.2E-05 52.2 3.4 25 89-113 167-191 (418)
444 2pbr_A DTMP kinase, thymidylat 86.3 0.41 1.4E-05 44.9 3.4 22 91-112 2-23 (195)
445 1e6c_A Shikimate kinase; phosp 86.3 0.36 1.2E-05 44.6 2.9 25 90-114 3-27 (173)
446 2iyv_A Shikimate kinase, SK; t 86.2 0.34 1.2E-05 45.4 2.8 25 90-114 3-27 (184)
447 2w0m_A SSO2452; RECA, SSPF, un 86.1 0.39 1.3E-05 46.4 3.2 23 90-112 24-46 (235)
448 2zts_A Putative uncharacterize 86.1 1.2 4.3E-05 43.3 7.0 23 90-112 31-53 (251)
449 1ixz_A ATP-dependent metallopr 86.0 0.45 1.5E-05 47.2 3.7 25 89-113 49-73 (254)
450 2z0h_A DTMP kinase, thymidylat 85.9 0.41 1.4E-05 45.1 3.2 22 91-112 2-23 (197)
451 1f2t_A RAD50 ABC-ATPase; DNA d 85.9 0.44 1.5E-05 43.6 3.2 22 91-112 25-46 (149)
452 2pez_A Bifunctional 3'-phospho 85.6 0.48 1.6E-05 44.3 3.4 24 89-112 5-28 (179)
453 1oxx_K GLCV, glucose, ABC tran 85.5 0.23 8E-06 52.5 1.3 23 90-112 32-54 (353)
454 1xp8_A RECA protein, recombina 85.5 0.95 3.3E-05 48.0 6.1 24 89-112 74-97 (366)
455 1vht_A Dephospho-COA kinase; s 85.5 0.49 1.7E-05 45.7 3.6 23 89-111 4-26 (218)
456 2vp4_A Deoxynucleoside kinase; 85.4 0.36 1.2E-05 47.4 2.5 25 88-112 19-43 (230)
457 3pxg_A Negative regulator of g 85.3 0.63 2.1E-05 51.1 4.7 27 87-113 199-225 (468)
458 4b4t_L 26S protease subunit RP 85.3 4.8 0.00016 43.6 11.6 29 86-114 212-240 (437)
459 3umf_A Adenylate kinase; rossm 85.2 0.59 2E-05 45.8 3.9 27 88-114 28-54 (217)
460 2npi_A Protein CLP1; CLP1-PCF1 85.1 0.44 1.5E-05 52.3 3.3 24 89-112 138-161 (460)
461 2obl_A ESCN; ATPase, hydrolase 85.1 0.5 1.7E-05 49.8 3.6 26 88-113 70-95 (347)
462 1ak2_A Adenylate kinase isoenz 84.9 0.58 2E-05 45.9 3.8 26 88-113 15-40 (233)
463 3nwj_A ATSK2; P loop, shikimat 84.8 0.45 1.5E-05 47.7 2.9 26 89-114 48-73 (250)
464 3pvs_A Replication-associated 84.7 3.3 0.00011 45.0 10.1 26 88-113 49-74 (447)
465 2p65_A Hypothetical protein PF 84.6 0.47 1.6E-05 43.9 2.8 25 88-112 42-66 (187)
466 3sr0_A Adenylate kinase; phosp 84.6 0.53 1.8E-05 45.7 3.3 24 91-114 2-25 (206)
467 1qvr_A CLPB protein; coiled co 84.5 1.6 5.5E-05 51.6 8.1 27 87-113 189-215 (854)
468 2w58_A DNAI, primosome compone 84.2 0.6 2E-05 44.4 3.4 24 90-113 55-78 (202)
469 1iy2_A ATP-dependent metallopr 84.2 0.58 2E-05 47.3 3.5 25 89-113 73-97 (278)
470 2f6r_A COA synthase, bifunctio 84.1 0.63 2.1E-05 47.4 3.8 24 88-111 74-97 (281)
471 1cr0_A DNA primase/helicase; R 84.1 0.55 1.9E-05 47.9 3.3 24 89-112 35-58 (296)
472 3r20_A Cytidylate kinase; stru 84.1 0.61 2.1E-05 46.3 3.5 26 89-114 9-34 (233)
473 3euj_A Chromosome partition pr 84.0 0.51 1.8E-05 52.0 3.2 23 90-112 30-52 (483)
474 3cmu_A Protein RECA, recombina 84.0 2.6 8.8E-05 54.0 9.8 27 87-113 1425-1451(2050)
475 1xx6_A Thymidine kinase; NESG, 83.9 2.4 8.2E-05 40.5 7.6 39 178-216 82-120 (191)
476 2xb4_A Adenylate kinase; ATP-b 83.9 0.6 2E-05 45.6 3.3 23 91-113 2-24 (223)
477 1q3t_A Cytidylate kinase; nucl 83.8 0.68 2.3E-05 45.5 3.7 29 86-114 13-41 (236)
478 1in4_A RUVB, holliday junction 83.8 0.57 1.9E-05 48.9 3.3 25 89-113 51-75 (334)
479 3be4_A Adenylate kinase; malar 83.8 0.65 2.2E-05 45.0 3.5 25 90-114 6-30 (217)
480 4b4t_K 26S protease regulatory 83.8 5.5 0.00019 43.0 11.2 63 50-114 169-231 (428)
481 2grj_A Dephospho-COA kinase; T 83.7 0.7 2.4E-05 44.3 3.6 26 87-112 10-35 (192)
482 2cve_A Hypothetical protein TT 83.6 1.8 6.3E-05 41.3 6.4 116 413-550 72-190 (191)
483 1ihu_A Arsenical pump-driving 83.5 1.2 4.1E-05 50.3 6.1 130 85-215 4-238 (589)
484 2z43_A DNA repair and recombin 83.5 3.4 0.00012 42.7 9.2 24 89-112 107-130 (324)
485 1lv7_A FTSH; alpha/beta domain 83.5 0.73 2.5E-05 45.7 3.9 25 89-113 45-69 (257)
486 3qf7_A RAD50; ABC-ATPase, ATPa 83.5 0.57 2E-05 49.7 3.2 22 91-112 25-46 (365)
487 2dpy_A FLII, flagellum-specifi 83.4 0.63 2.2E-05 50.6 3.6 26 88-113 156-181 (438)
488 3te6_A Regulatory protein SIR3 83.4 4.4 0.00015 42.0 9.9 28 86-113 42-69 (318)
489 3fgn_A Dethiobiotin synthetase 83.3 6.1 0.00021 39.4 10.6 65 151-215 126-197 (251)
490 1m7g_A Adenylylsulfate kinase; 83.3 0.87 3E-05 43.8 4.2 24 89-112 25-48 (211)
491 3b60_A Lipid A export ATP-bind 83.1 0.53 1.8E-05 53.2 2.9 24 89-112 369-392 (582)
492 1n0w_A DNA repair protein RAD5 83.1 0.64 2.2E-05 45.4 3.2 23 90-112 25-47 (243)
493 3b5x_A Lipid A export ATP-bind 82.9 0.57 1.9E-05 52.9 3.1 24 89-112 369-392 (582)
494 1q57_A DNA primase/helicase; d 82.7 1.4 4.7E-05 48.7 6.1 24 90-113 243-266 (503)
495 1yqt_A RNAse L inhibitor; ATP- 82.6 0.64 2.2E-05 52.0 3.3 23 90-112 48-70 (538)
496 3iqw_A Tail-anchored protein t 82.3 3.9 0.00013 42.7 9.0 40 177-216 223-263 (334)
497 3ake_A Cytidylate kinase; CMP 82.2 0.76 2.6E-05 43.7 3.3 24 91-114 4-27 (208)
498 3io3_A DEHA2D07832P; chaperone 82.1 4.1 0.00014 42.7 9.1 42 177-218 232-274 (348)
499 3pxi_A Negative regulator of g 81.9 0.94 3.2E-05 52.8 4.5 98 86-215 198-302 (758)
500 1iqp_A RFCS; clamp loader, ext 81.8 1.5 5E-05 44.8 5.5 25 88-112 45-69 (327)
No 1
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=100.00 E-value=9.5e-105 Score=830.71 Aligned_cols=321 Identities=44% Similarity=0.781 Sum_probs=275.8
Q ss_pred EEecccccccCCeeeccCCCCCCCCCccCCCeeeEEEeecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCCC
Q 005713 359 AVCGIDDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETAD 438 (681)
Q Consensus 359 ~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~ 438 (681)
+++|++++.+|||||+.+++.+||++++++|+++++|.++++||+|+||+++++++|++||.++.++||+|+|+++++++
T Consensus 2 av~Gl~~~~iGDTl~~~~~p~~L~~~~~~ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~~~~t~ 81 (332)
T 3e3x_A 2 NATGLGELKISDTICAQNAVEALPALSVDEPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQTDDPD 81 (332)
T ss_dssp ---------------------------CCCCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEECSSTT
T ss_pred CccCCCCCccCCEEcCCCCcccCCCCCCCCCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEEcCCCC
Confidence 57899999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEecccchhhhhHHhhhhhcceEEEEcCCeeEEEeeCCeecCcEEEEEEEecCCChhhHHHHHhccCeeeeceeecCC
Q 005713 439 TFIVSGRGTLHITILIENMRREGYEFMVGPPKVINKKVNDKLLEPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGS 518 (681)
Q Consensus 439 ~~~v~g~Gelhl~il~e~lrreg~e~~~~~P~Vi~~~~~g~llEP~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~ 518 (681)
+|+|+|||||||+|++|+|||||+|+.+++|+|+|||.+|++||||+.|+|+||++|+|+||++|++|||+|.+|++. +
T Consensus 82 ~~~v~G~GELHLeIl~ErLrrEg~ev~v~~P~V~YrEt~G~llEPi~~v~I~vPee~~G~Vm~~L~~RRG~i~~m~~~-~ 160 (332)
T 3e3x_A 82 KFRVSGRGELHLSILIENMRREGFELAVSRPEVIIXEEDGQLMEPFETVTIDVMEEHQGGIMENIGLRXGELXDMAPD-G 160 (332)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTBCEEECCCEECCEEETTEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEC-S
T ss_pred eEEEEeeCHHHHHHHHHHHHhcCceEEEeCCEEEEEEECCEEECcEEEEEEEECHHHHHHHHHHHHhhcccccCceEC-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999986 3
Q ss_pred CCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceeec-CCCCCCcccceEEeCCCccchHHhhhchhhhCCcccc
Q 005713 519 EGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPW-AGDISTRDQGSLVAFEDGTTTSYALSSSQERGQMFLG 597 (681)
Q Consensus 519 ~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~-~g~~~~~~~g~~~~~~~g~~t~~~l~~~~~rG~~f~~ 597 (681)
+++++|+|.+|+++|+||+++|+|+|+|+|+|++.|+||+|+ +|+++.|.||+|||+++|++|+|||++||+||+|||.
T Consensus 161 ~g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~~F~~Y~p~~pg~i~~r~~g~lv~~~~g~~~~y~l~~~~~rg~~fv~ 240 (332)
T 3e3x_A 161 KGRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHTFDHYGPHXGGNIGQRVNGVLIANAAGKALTNALFNLQERGRLFIG 240 (332)
T ss_dssp SSEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEEEEEEEEECCCCSCSCCCCCEEEESSCEECCHHHHHHHTTSEEESCC
T ss_pred CCeEEEEEEEChHHhhhHHHHhhhhCCCcEEEEEEecCceEcCCCccccccCceEEEcCCCcEeHhhhhhHHhhceEEec
Confidence 579999999999999999999999999999999999999999 7999999999999999999999999999999999999
Q ss_pred CCccccccceeeccCCCCCeeeeeeccccccccc-cCCCceeeecCCcccCHHHHHhhccCCeeEEecCCceEeeecccc
Q 005713 598 PGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNIR-SNKEQTVVLDTPLDYSLDDCIEYIQEDELVEVTPLSIRMCKNPKF 676 (681)
Q Consensus 598 ~~~~vy~gm~vg~~~~~~d~~~n~~~~k~~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~de~~e~tp~~~r~~k~~~~ 676 (681)
||++||+|||||||+|+|||+|||||+||||||| ||+|++++|+||+.||||+|||||+|||||||||++|||||++ |
T Consensus 241 pg~~vy~gmivg~~~r~~dl~vn~~k~k~ltn~r~~~~d~~~~l~~~~~~~le~~~~~i~~de~vevtp~~ir~rk~~-l 319 (332)
T 3e3x_A 241 HGVEVYEGMVIGIHSRDNDLTVNALKGKQLTNVRASGTDDAQVLTPPIVMTLEQALEFIDDDELVEVTPESIRIRKXF-L 319 (332)
T ss_dssp TTCEECTTEEEEEESSSSCEEECSCC--------------CCCCCCCCCCCHHHHHHHCCTTEEEEECSSCEEEEESS-C
T ss_pred CCCeEECCeEEEecCCcCCcEEecccccccccccccCCccceEecCCcccCHHHHHhhhcCCeeEEEcCceEEEEecc-C
Confidence 9999999999999999999999999999999999 8999999999999999999999999999999999999999999 9
Q ss_pred ccCCC
Q 005713 677 AKRGR 681 (681)
Q Consensus 677 ~~~~~ 681 (681)
|++.|
T Consensus 320 ~~~~r 324 (332)
T 3e3x_A 320 TESDR 324 (332)
T ss_dssp SHHHH
T ss_pred ChhHh
Confidence 97643
No 2
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=2.3e-86 Score=775.98 Aligned_cols=456 Identities=28% Similarity=0.426 Sum_probs=393.4
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCcccccccee--eeeeccchhhcccceeEEeeeeEEeeC-------CeEEEE
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK--ERIMDSNDLERERGITILSKNTSITYN-------DTKINI 156 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~~~-------~~~i~i 156 (681)
.+++|||+|+||+|||||||+++|+..++.+...+.+. +++||++++|++|||||.++.+++.|+ ++.|||
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 36799999999999999999999999998877655543 689999999999999999999999986 589999
Q ss_pred EeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhh
Q 005713 157 IDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN 236 (681)
Q Consensus 157 iDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~ 236 (681)
||||||.||..|+.++++.+|+||+||||.+|++.||+.+|++|.+.++|+|+|+||||+..+++..+++++++.+....
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~~~~ 169 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGHTP 169 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHCSCE
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhcccce
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888876542100
Q ss_pred -------------------------------------------------------------ccc----------------
Q 005713 237 -------------------------------------------------------------ATD---------------- 239 (681)
Q Consensus 237 -------------------------------------------------------------~~~---------------- 239 (681)
..+
T Consensus 170 ~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~~~~ 249 (709)
T 4fn5_A 170 VPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGELSEA 249 (709)
T ss_dssp EESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCCCHH
T ss_pred eeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCccHH
Confidence 000
Q ss_pred -----------ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCc--------------------cccCCc
Q 005713 240 -----------EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPR--------------------IEKDGA 288 (681)
Q Consensus 240 -----------~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~--------------------~~~~~p 288 (681)
...-+|++++||+++. |+..||++|++++|+|. +++++|
T Consensus 250 ~~~~~l~~~~~~~~~~pv~~gsa~~~~----------gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~d~~~p 319 (709)
T 4fn5_A 250 EIKEGLRLRTLACEIVPAVCGSSFKNK----------GVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEP 319 (709)
T ss_dssp HHHHHHHHHHHTTSCEEEEECBTTTTB----------THHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEECSCTTSC
T ss_pred HHHHHHHHhhhhceeeeeeeeecccCC----------chHHHHHHHHhhCCCCcccccccccCCccccccccccCCccCc
Confidence 0113689999999998 99999999999999994 466899
Q ss_pred eEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEeccccccc
Q 005713 289 LQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQI 368 (681)
Q Consensus 289 ~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~ 368 (681)
|.++|||+.+|++.|+++++||+||+|++||+|++...++.. +|.+|+.+.|.+++++++|.|||||+|.|++++.+
T Consensus 320 l~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~~~~---~v~~l~~~~g~~~~~v~~~~aGdIv~i~Gl~~~~~ 396 (709)
T 4fn5_A 320 FSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKGKKE---RVGRMVQMHANQREEIKEVRAGDIAALIGMKDVTT 396 (709)
T ss_dssp CEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTCCCC---BCCCEECCCSSCCCEESEECTTCEEEECSCSSCCT
T ss_pred ceEEEEEeecccCCCceEEEeccCCCCCCCCEEEEecCCcEE---eecceeEeecceeeEeeeecCCCeeeecCCCcCcc
Confidence 999999999999999999999999999999999998888765 89999999999999999999999999999999999
Q ss_pred CCeeeccCCCCCCCCCccCCCeeeEEEeecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccch
Q 005713 369 GETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTL 448 (681)
Q Consensus 369 Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gel 448 (681)
|||||+.+.+..++.+.+++|++++++++.+ ..+ ..+|.++|.++.++||+|+++.++++++++++|+|||
T Consensus 397 gdTl~~~~~~~~~~~~~~~~Pvv~vavep~~----~~d-----~~kL~~~L~kL~~eDPsl~v~~~eetge~vi~g~GEL 467 (709)
T 4fn5_A 397 GDTLCSIEKPIILERMDFPEPVISVAVEPKT----KAD-----QEKMGIALGKLAQEDPSFRVKTDEESGQTIISGMGEL 467 (709)
T ss_dssp TCEEECSSSCCBCC----CCCSEEEEECBSS----TTT-----HHHHHHHHHHHHHHCTTCEEEEETTTTEEEEEESCHH
T ss_pred CCEecCCCccccCCCCCCCCcceEEEEecCC----HHH-----hhhhHHHHHHHHHhCCeEEEEEecCCCcEEEEEECHH
Confidence 9999999988899999999999999999876 334 6899999999999999999999899999999999999
Q ss_pred hhhhHHhhhhhc-ceEEEEcCCeeEEEee---------------------------------------------------
Q 005713 449 HITILIENMRRE-GYEFMVGPPKVINKKV--------------------------------------------------- 476 (681)
Q Consensus 449 hl~il~e~lrre-g~e~~~~~P~Vi~~~~--------------------------------------------------- 476 (681)
||+|++++||++ |+|+.+++|+|+|||.
T Consensus 468 HLei~l~rLr~e~gvev~vs~P~V~yrETi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~e~g~~~~~~~f~~~~~ 547 (709)
T 4fn5_A 468 HLDIIVDRMKREFGVEANIGKPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDEKGNITEGLVFENEVV 547 (709)
T ss_dssp HHHHHHHHHHTTTCCCBCCBCCCCCCEEECCCCSEEEEEEEEEEETTEEEEEEEEEEEECCCBC-CCCBCCEEEEEECC-
T ss_pred HHHHHHHHHHHHhCceEEEeeceEEEEEEEecCCceecceeeeccCCcCcceeEEEEEeeccccccCCCcCceEEecccc
Confidence 999999999988 9999999999999970
Q ss_pred -------------------------------------------------------------------CCeecCcEEEEEE
Q 005713 477 -------------------------------------------------------------------NDKLLEPYEIATV 489 (681)
Q Consensus 477 -------------------------------------------------------------------~g~llEP~~~~~i 489 (681)
.++||||||.|+|
T Consensus 548 ~~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~veI 627 (709)
T 4fn5_A 548 GGVVPKEYIPAIQKGIEEQMKNGVVAGYPLIGLKATVFDGSYHDVDSNEMAFKIAASMATKQLAQKGGGKVLEPIMKVEV 627 (709)
T ss_dssp CCSSCGGGHHHHHHHHHHHHHHCSSSSCCBSEEEEEEEECCCCTTTBCHHHHHHHHHHHHHTHHHHSCCEEEEEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHHhcCcccCCceeeeEEEEEEccccCCCCChHHHHHHHHHHHHHHHHHCCCEEECceEEEEE
Confidence 0147999999999
Q ss_pred EecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceeecCCCCC
Q 005713 490 EVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWAGDIS 565 (681)
Q Consensus 490 ~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~g~~~ 565 (681)
.||++|+|+||++|++|||+|++|++. ++...|+|++|++|++||.++||++|+|+|+|++.|+||+++|+++.
T Consensus 628 ~~p~~~~G~V~~~L~~RRG~i~~~~~~--~~~~~i~a~vPv~E~~gf~~~LRs~T~G~a~~~~~F~~y~~vp~~~~ 701 (709)
T 4fn5_A 628 VTPEDYMGDVMGDLNRRRGLIQGMEDT--VSGKVIRAEVPLGEMFGYATDVRSMSQGRASYSMEFSKYAEAPSNIV 701 (709)
T ss_dssp EEETTTHHHHHHHHGGGTCEEEEEEEC--SSEEEEEEEEESGGGTTHHHHHHHHTTTCCEEECCEEEEEECCHHHH
T ss_pred EECHHHHHHHHHHHHhcCCEEeceEec--CCCEEEEEEecHHHhhCHHHHHHhhCCCeEEEEEEECCcccCCcCHH
Confidence 999999999999999999999999985 35778999999999999999999999999999999999999998764
No 3
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=3.2e-88 Score=781.86 Aligned_cols=455 Identities=24% Similarity=0.327 Sum_probs=414.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCcccccccee--eeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK--ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~--~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
+||||+|+||+|||||||+++|++.++.+...+.+. +++||++++|++|||||.++.+++.|++++|||||||||.||
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 589999999999999999999999999988776654 689999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHh----------
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIEL---------- 235 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l---------- 235 (681)
..++.++++.+|+||+||||.+|+++||+.+|+++.++++|+|+|+||||+..+++..+++++++.|...
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~~~ 160 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVELY 160 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCCSC
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeEee
Confidence 9999999999999999999999999999999999999999999999999999999888888776643100
Q ss_pred ----------------------------hcc----------------cccCCceEEEeecccCCCCCCCCCCCCCcchhH
Q 005713 236 ----------------------------NAT----------------DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLF 271 (681)
Q Consensus 236 ----------------------------~~~----------------~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll 271 (681)
... ....-+|++++||++|. |+++||
T Consensus 161 ~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~----------Gv~~LL 230 (638)
T 3j25_A 161 PNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNI----------GIDNLI 230 (638)
T ss_dssp GGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCC----------SHHHHH
T ss_pred ccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCC----------CchhHh
Confidence 000 00113799999999998 999999
Q ss_pred HHHHhhCCCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecce
Q 005713 272 ESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEI 351 (681)
Q Consensus 272 ~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~ 351 (681)
+.|.+++|+|..+.+.||.++|||+.+|++.|+++++||+||+|++||.|++...++ .+|.+++.+.|.++.++++
T Consensus 231 d~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~~~----~~v~~l~~~~g~~~~~v~~ 306 (638)
T 3j25_A 231 EVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEKEK----IKVTEMYTSINGELCKIDR 306 (638)
T ss_dssp HHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCCCC----SSBCCCCSSCCCCBSCCCT
T ss_pred hhhhccccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccCcc----eeEEeeecccccccccccc
Confidence 999999999999889999999999999999999999999999999999998766543 3899999999999999999
Q ss_pred ecCCCEEEEecccccccCCeeeccCCCCCCCCCccCCCeeeEEEeecCCCCCcccCccccHHHHHHHHHHHHhccceEEE
Q 005713 352 VAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRV 431 (681)
Q Consensus 352 a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v 431 (681)
|.|||||+|.| .++.+|+|+++...+..++.+.+++|++++++++.+ ..+ .++|.++|.++.++||+|++
T Consensus 307 a~aGdIv~i~g-~~~~~~~tl~d~~~~~~~~~i~~p~Pv~~~aiep~~----~~d-----~~kL~~aL~kL~~eDPsl~v 376 (638)
T 3j25_A 307 AYSGEIVILQN-EFLKLNSVLGDTKLLPQRKKIENPHPLLQTTVEPSK----PEQ-----REMLLDALLEISDSDPLLRY 376 (638)
T ss_dssp TBCCCCSCCCS-SSCSSEECSSSSSSGGGCSCCCCCCCCCCCEEECCS----HHH-----HHHHHHHHHHHHHTCTTCCC
T ss_pred cccceEEEEec-cccccCceecCCCCcccccCccCCCccceeeeccCC----hHH-----HHHHHHHHHHHhhcCCeeEE
Confidence 99999999988 578889999988777778889999999999999765 333 68999999999999999999
Q ss_pred EECCCCCceEEecccchhhhhHHhhhhhc-ceEEEEcCCeeEEEee----------------------------------
Q 005713 432 ADGETADTFIVSGRGTLHITILIENMRRE-GYEFMVGPPKVINKKV---------------------------------- 476 (681)
Q Consensus 432 ~~~~~~~~~~v~g~Gelhl~il~e~lrre-g~e~~~~~P~Vi~~~~---------------------------------- 476 (681)
+.++++++++++|+|||||+|++++|||+ |+|+.+++|+|+|||.
T Consensus 377 ~~~~et~e~il~g~GeLHLei~~~rL~~efgvev~~~~P~V~yrEti~~~~~~~~~~~~~~~~~~~~v~~~~eP~~~~~g 456 (638)
T 3j25_A 377 YVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVIYMERPLKNAEYTIHIEVPPNPFWASIGLSVSPLPLGSG 456 (638)
T ss_dssp CCCSSSSCCCCCCSSHHHHHHHHHHHTTTTCCCCEEECCCCCCCBCCCSCCEECCCCCSSSCCCCCCCCEECCCCCSSCC
T ss_pred EecCCCceEEEccccHHHHHHHHHHHHHHhCCcEEEeCCceeEEEEecccceEEEEEecCCCCceEEEEEEEecccCCCC
Confidence 99999999999999999999999999988 9999999999999970
Q ss_pred --------------------------------------------------------------------------CCeecC
Q 005713 477 --------------------------------------------------------------------------NDKLLE 482 (681)
Q Consensus 477 --------------------------------------------------------------------------~g~llE 482 (681)
+++|||
T Consensus 457 ~~f~~~~~~~~~~~~~~~av~~g~~~~~~~Gl~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p~LLE 536 (638)
T 3j25_A 457 MQYESSVSLGYLNQSFQNAVMEGIRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQVLKKAGTELLE 536 (638)
T ss_dssp CCCCCCCCSSSTTHHHHHHHHHHHHHHHHSSSSCCCCCSCCCCCCCCCCSSCSCCSHHHHHHHHHHHHHHHHHHCCBCCC
T ss_pred cEEEeeeecccchhhhhhHHhhhHHHHHhccccCCcccceEEEEEECcccCCCCCHHHHHHHHHHHHHHHHHHCCCEEEc
Confidence 015789
Q ss_pred cEEEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceeecCC
Q 005713 483 PYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWAG 562 (681)
Q Consensus 483 P~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~g 562 (681)
|||.|+|.||++|+|+||++|++|||+|++|+.. ++++.|+|++|++||+||.++|||+|+|+|+|+++|+||++++|
T Consensus 537 Pi~~veI~vP~~~~G~V~~~L~~RRG~i~~~~~~--~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~a~~~~~f~~y~~vpg 614 (638)
T 3j25_A 537 PYLSFKIYAPQEYLSRAYNDAPKYCANIVDTQLK--NNEVILSGEIPARCIQEYRSDLTFFTNGRSVCLTELKGYHVTTG 614 (638)
T ss_dssp CCTTCEEEEETTTHHHHHHHHHHTTCCCCCCCCC--TTEEEEECCCSSCCHHHHHHHHHHTTTTCCEEECCCCCCCCCCS
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCcEEeCeEec--CCeEEEEEEECHHHhhCHHHHHHhhCCCcEEEEEEECceEECCC
Confidence 9999999999999999999999999999999984 47899999999999999999999999999999999999999999
Q ss_pred CCCCcc
Q 005713 563 DISTRD 568 (681)
Q Consensus 563 ~~~~~~ 568 (681)
+...+.
T Consensus 615 dp~~~~ 620 (638)
T 3j25_A 615 EPVCQP 620 (638)
T ss_dssp CCSCCC
T ss_pred Cccccc
Confidence 875443
No 4
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=1.2e-81 Score=715.69 Aligned_cols=477 Identities=29% Similarity=0.460 Sum_probs=402.2
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC-----eEEEEEeCC
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND-----TKINIIDTP 160 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-----~~i~iiDTP 160 (681)
.++++||+|+||+|||||||+++|++.++.+.... ..++++|+++.|++||+|+......+.|.. +.++|||||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~-~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTP 81 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISERE-KREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTP 81 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC------------------------CCCCSEEEEEECTTSCEEEEEEECCC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCccccc-ccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECC
Confidence 34689999999999999999999999877655432 357899999999999999999998888863 799999999
Q ss_pred CccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 161 GHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 161 Gh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
||.||..++.++++.+|++|||||+++|++.||.++|..+...++|+|+|+||+|+..++++++.+++.+.+ +...
T Consensus 82 Gh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~l---g~~~- 157 (600)
T 2ywe_A 82 GHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVL---GLDP- 157 (600)
T ss_dssp CSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTS---CCCG-
T ss_pred CcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhh---CCCc-
Confidence 999999999999999999999999999999999999999999999999999999998877655555544432 2211
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCE
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGME 320 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~ 320 (681)
.+++++||++|. |+.+||++|++++|+|..+.+.||.++|++++++++.|+++++||++|++++||.
T Consensus 158 ---~~vi~vSAktg~----------GI~~Lle~I~~~lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l~~Gd~ 224 (600)
T 2ywe_A 158 ---EEAILASAKEGI----------GIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEVKPGDK 224 (600)
T ss_dssp ---GGCEECBTTTTB----------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEECTTCE
T ss_pred ---ccEEEEEeecCC----------CchHHHHHHHHhcccccccccCCcceeEEEEeecccceEEEEEEEEeCEEecCCE
Confidence 248999999999 9999999999999999988899999999999999999999999999999999999
Q ss_pred EEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEe-c---ccccccCCeeeccCCC--CCCCCCccCCCeeeEE
Q 005713 321 VRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC-G---IDDIQIGETIADKVSG--KPLPSIKVEEPTVKMS 394 (681)
Q Consensus 321 v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~-g---l~~~~~Gdtl~~~~~~--~~l~~~~~~~P~~~~~ 394 (681)
|.+.+++... +|++|+.+.+ ++.+++++.|||++++. | ++++.+||||++.+++ .++|.+++++|+++++
T Consensus 225 I~~~~~~~~~---~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~P~v~~~ 300 (600)
T 2ywe_A 225 IMLMSTGKEY---EVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNPTKEPVPGFQPAKPMVYAG 300 (600)
T ss_dssp EEETTTTEEE---ECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSSCTTCEEEESSSCCSSCCSCCCCCCCCEEEE
T ss_pred EEeccccceE---eeecccccCC-CceECCEEecCceeeeeccccchhhccCCCEEEeCCCccccccCCCCCCCcEEEEE
Confidence 9999987665 8999988865 68899999999999884 4 5689999999998877 5899999999999999
Q ss_pred EeecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCC---CCceEEecccchhhhhHHhhhhhc-ceEEEEcCCe
Q 005713 395 FSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGET---ADTFIVSGRGTLHITILIENMRRE-GYEFMVGPPK 470 (681)
Q Consensus 395 ~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~---~~~~~v~g~Gelhl~il~e~lrre-g~e~~~~~P~ 470 (681)
+.+++++ + .++|+++|.++.++||+|++++..+ ..+|.|+++|+|||+|++|+|+|| |+|+.+++|+
T Consensus 301 i~p~~~~----d-----~~~l~~aL~kL~~eD~sl~~~~et~~~l~~g~~~~~~G~lHlei~~erl~re~~~~v~~~~P~ 371 (600)
T 2ywe_A 301 IYPAEDT----T-----YEELRDALEKYAINDAAIVYEPESSPALGMGFRVGFLGLLHMEIVQERLEREYGVKIITTAPN 371 (600)
T ss_dssp EEECTTC----C-----HHHHHHHHHHHHTTCSSCEEEEEEETTTEEEEEEEESSHHHHHHHHHHHHHHSCCCEEECCCE
T ss_pred eeccccc----c-----HHHHHHHHHHHhhhCCEEEEEECCccccccceEEEeccHHHHHHHHHHHHhhcCceEEEEeee
Confidence 9998732 3 6899999999999999999986533 246889999999999999999988 9999999999
Q ss_pred eEEEe--e-CC-------------------eecCcEEEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEe
Q 005713 471 VINKK--V-ND-------------------KLLEPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKI 528 (681)
Q Consensus 471 Vi~~~--~-~g-------------------~llEP~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~v 528 (681)
|+||| . +| .+||||++++|.||++|+|+||++|++|||++.+|++. +++++.|+|++
T Consensus 372 V~yreti~~~g~~~~~~~p~~~p~~~~~~~~llEP~~~~~i~vP~e~~G~v~~~~~~rrG~~~~~~~~-~~~~~~i~~~~ 450 (600)
T 2ywe_A 372 VIYRVKKKFTDEVIEVRNPMDFPDNAGLIEYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQKNMTYL-DPNTVYLEYEM 450 (600)
T ss_dssp ECEEEEETTCSSCEEESSGGGSCSCGGGEEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEE-ETTEEEEEEEE
T ss_pred EEEEEEecCCCcEEEEeChhhCCCCCcccccccCCeEEEEEEecHHHHHHHHHHHHHcCcEEeccEEc-CCCEEEEEEEE
Confidence 99999 2 56 89999999999999999999999999999999999996 34699999999
Q ss_pred echhh-cchHHHHhhcCcceEEEEeeecceeec-CCCCCCcccceEEeCCCccchHHhhhchhhhCCcccc
Q 005713 529 PTRGL-LGLRNAILTASRGTAILNTIFDGYGPW-AGDISTRDQGSLVAFEDGTTTSYALSSSQERGQMFLG 597 (681)
Q Consensus 529 P~~~l-~gy~~~l~s~T~G~g~~~~~f~~Y~~~-~g~~~~~~~g~~~~~~~g~~t~~~l~~~~~rG~~f~~ 597 (681)
|++|| +||+++|+|+|+|+|+|+++|+||+|+ .+.+..+.||.+| |.-++--+-..++.||+-++.
T Consensus 451 P~~e~~~~~~~~L~s~T~G~g~~~~~f~~y~~~~~~~~~~~~ng~~v---~~~~~~~~~~~~~~~~~~~~~ 518 (600)
T 2ywe_A 451 PLSEIIVDFHDKIKSISRGFASYDYEFIGYRPSDLIKLTVLINKKPV---DALSFIVHADRAQKFARRVAE 518 (600)
T ss_dssp EHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEECCEEEEEEEESSSBC---GGGCEEEEGGGHHHHHHHHHH
T ss_pred cHHHHHhhHHHhhhhcCCCeEEEEEEeccceEccccccccccCCCEe---ccchhhhhhHHHHHHHHHHHH
Confidence 99999 799999999999999999999999999 5889999999866 334455567778888875544
No 5
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=4.7e-80 Score=719.94 Aligned_cols=456 Identities=28% Similarity=0.410 Sum_probs=413.5
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccce--eeeeeccchhhcccceeEEeeeeEEeeCC-------eEEEE
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTV--KERIMDSNDLERERGITILSKNTSITYND-------TKINI 156 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~--~~~~~D~~~~E~erGiTi~~~~~~~~~~~-------~~i~i 156 (681)
.++++||+|+||+|||||||+++|+..++.+...+.+ ..+++|+++.|+++|+|+......+.|++ +.++|
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 4578999999999999999999999987766544333 25899999999999999999999999988 99999
Q ss_pred EeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHh-
Q 005713 157 IDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIEL- 235 (681)
Q Consensus 157 iDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l- 235 (681)
||||||.+|..++.++++.+|++|+|||+++|++.++..+|+.+...++|+++|+||+|+..+++.++++++++.+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~~~~ 166 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGANP 166 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999888877777776654210
Q ss_pred --------------------------------hc----------------------------cc----------------
Q 005713 236 --------------------------------NA----------------------------TD---------------- 239 (681)
Q Consensus 236 --------------------------------~~----------------------------~~---------------- 239 (681)
+. .+
T Consensus 167 ~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~l~~~ 246 (704)
T 2rdo_7 167 VPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEELTEA 246 (704)
T ss_pred eeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCCCHH
Confidence 00 00
Q ss_pred -----------ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCcc--------------------ccCCc
Q 005713 240 -----------EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI--------------------EKDGA 288 (681)
Q Consensus 240 -----------~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~--------------------~~~~p 288 (681)
....+|++++||++|. |+.+||++|++++|+|.. +.++|
T Consensus 247 ~l~~~l~~~~~~~~~~Pv~~gSa~~~~----------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p 316 (704)
T 2rdo_7 247 EIKGALRQRVLNNEIILVTCGSAFKNK----------GVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEP 316 (704)
T ss_pred HHHHHHHHHHHhCCeeEEEEeecccCc----------cHHHHHHHHHHHCCChhhcccccccCCcccccccccccCCCCc
Confidence 0012799999999998 999999999999999854 25789
Q ss_pred eEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEeccccccc
Q 005713 289 LQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQI 368 (681)
Q Consensus 289 ~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~ 368 (681)
|.++|||+.+|++.|+++++||+||+|++||.|++.+.+... +|.+|+.+.|.+++++++|.|||||+|.|++++.+
T Consensus 317 ~~~~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~---~v~~l~~~~g~~~~~v~~~~aGdIv~i~gl~~~~~ 393 (704)
T 2rdo_7 317 FSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKAARE---RFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTT 393 (704)
T ss_pred eEEEEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCCCcEE---EeceEEEEeCCCceEcceeCCCCEEEEeCcccCcc
Confidence 999999999999999999999999999999999998887665 99999999999999999999999999999999999
Q ss_pred CCeeeccCCCCCCCCCccCCCeeeEEEeecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccch
Q 005713 369 GETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTL 448 (681)
Q Consensus 369 Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gel 448 (681)
|||||+.+.+.+++++++++|++++++++++. .| .++|.++|.++.++||+|+++.++++++++++|+|||
T Consensus 394 GdTl~~~~~~~~l~~~~~~~Pv~~~ai~p~~~----~d-----~~kl~~~L~~L~~eDp~l~v~~~~etge~il~g~Gel 464 (704)
T 2rdo_7 394 GDTLCDPDAPIILERMEFPEPVISIAVEPKTK----AD-----QEKMGLALGRLAKEDPSFRVWTDEESNQTIIAGMGEL 464 (704)
T ss_pred CCEEeCCCcccccCCCCCCCceEEEEEEECCh----HH-----HHHHHHHHHHHHhhCCEEEEEEcCCCCcEEEEeCCHH
Confidence 99999988888899999999999999999863 23 6899999999999999999999999999999999999
Q ss_pred hhhhHHhhhhhc-ceEEEEcCCeeEEEe-----e------------------------------C---------------
Q 005713 449 HITILIENMRRE-GYEFMVGPPKVINKK-----V------------------------------N--------------- 477 (681)
Q Consensus 449 hl~il~e~lrre-g~e~~~~~P~Vi~~~-----~------------------------------~--------------- 477 (681)
||+|++++|+|+ |+++.+++|+|+||| . .
T Consensus 465 hLei~~~rL~~~f~v~v~~~~p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl~~~~~g~g~~f~~~~~g~~ 544 (704)
T 2rdo_7 465 HLDIIVDRMKREFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGV 544 (704)
T ss_pred HHHHHHHHHHHHhCceEEEeCCEEEEEEeeccccccceeeeccccCCCCeeEEEEEEEEECCCCCCCCCcEEEEeccCCc
Confidence 999999999987 999999999999998 2 0
Q ss_pred -----------------------------------------------------------------CeecCcEEEEEEEec
Q 005713 478 -----------------------------------------------------------------DKLLEPYEIATVEVP 492 (681)
Q Consensus 478 -----------------------------------------------------------------g~llEP~~~~~i~vp 492 (681)
.+||||||.++|.||
T Consensus 545 ~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p 624 (704)
T 2rdo_7 545 IPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETP 624 (704)
T ss_pred CcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEeccccCCCCcHHHHHHHHHHHHHHHHHhcCCeeeeeEEEEEEEeC
Confidence 168999999999999
Q ss_pred CCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceeecCCCCC
Q 005713 493 EEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWAGDIS 565 (681)
Q Consensus 493 ~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~g~~~ 565 (681)
++|+|+||++|++|||+|++|++.+ +++.|+|++|++||+||.++|||+|+|+|+|+++|+||+++++++.
T Consensus 625 ~~~~G~v~~~l~~rrG~i~~~~~~~--~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~ 695 (704)
T 2rdo_7 625 EENTGDVIGDLSRRRGMLKGQESEV--TGVKIHAEVPLSEMFGYATQLRSLTKGRASYTMEFLKYDEAPSNVA 695 (704)
T ss_pred HHHHhHHHHHHHhCCceEeCceecC--CeEEEEEEecHHHHhhHHHHhHhhcCCceEEEEEeCcceECCccHH
Confidence 9999999999999999999999863 6899999999999999999999999999999999999999998853
No 6
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=4.1e-80 Score=704.43 Aligned_cols=475 Identities=29% Similarity=0.440 Sum_probs=397.2
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC-----CeEEEEEeCCC
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN-----DTKINIIDTPG 161 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-----~~~i~iiDTPG 161 (681)
+++|||+|+||+|||||||+++|++.++.+... ....+++|+++.|++||+|+......+.|. ++.++||||||
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~-~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPG 80 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDR-EMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPG 80 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC---------------------------CEEEEEEECTTSCEEEEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccc-cccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCC
Confidence 368999999999999999999999988776544 235789999999999999999999999886 38999999999
Q ss_pred ccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 162 HSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 162 h~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
|.||..++.++++.+|++|+|+|+++|++.||..+|..+...++|+|+|+||+|+.+++++++.+++.+.+ +...
T Consensus 81 h~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~l---g~~~-- 155 (599)
T 3cb4_D 81 HVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIV---GIDA-- 155 (599)
T ss_dssp CGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHT---CCCC--
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHh---CCCc--
Confidence 99999999999999999999999999999999999999999999999999999999887666666555543 2211
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEE
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEV 321 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v 321 (681)
.+++++||++|. |+.+||+.|.+++|+|..+.++||+++|++++++++.|+++++||++|+|++||.|
T Consensus 156 --~~vi~vSAktg~----------GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l~~Gd~v 223 (599)
T 3cb4_D 156 --TDAVRCSAKTGV----------GVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLRKGDKV 223 (599)
T ss_dssp --TTCEEECTTTCT----------THHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCEESSCEE
T ss_pred --ceEEEeecccCC----------CchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEEecCCEE
Confidence 248999999999 99999999999999999888999999999999999999999999999999999999
Q ss_pred EEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEe-c---ccccccCCeeeccCCC--CCCCCCccCCCeeeEEE
Q 005713 322 RVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC-G---IDDIQIGETIADKVSG--KPLPSIKVEEPTVKMSF 395 (681)
Q Consensus 322 ~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~-g---l~~~~~Gdtl~~~~~~--~~l~~~~~~~P~~~~~~ 395 (681)
.+.+++... +|.+|+.+.+ +.++++++.|||++++. | ++++.+||||++.+++ .++|.+..++|++++.+
T Consensus 224 ~~~~~~~~~---~v~~i~~~~~-~~~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl~~~~~~~~~~l~~~~~~~P~v~~~i 299 (599)
T 3cb4_D 224 KVMSTGQTY---NADRLGIFTP-KQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPAEKALPGFKKVKPQVYAGL 299 (599)
T ss_dssp EETTTCCEE---ECCEEEEESS-SEEECSEECTTCEEEEECCCSSGGGSCTTCEEEESSSCCSSCCTTCCCCCCCEEEEE
T ss_pred Eecccccee---EEeeeeeccC-CceECCEEcCCCeeEeeccccccccCccCCEeeecCCccccccccccCCCcceEEEE
Confidence 999988765 8899988865 48899999999999884 4 5689999999998877 78999999999999999
Q ss_pred eecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCC---CCceEEecccchhhhhHHhhhhhc-ceEEEEcCCee
Q 005713 396 SINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGET---ADTFIVSGRGTLHITILIENMRRE-GYEFMVGPPKV 471 (681)
Q Consensus 396 ~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~---~~~~~v~g~Gelhl~il~e~lrre-g~e~~~~~P~V 471 (681)
.+++++ + .+++.++|.++.++|++|++++..+ ..+|.++++|+|||+|++|+|+|| |+|+.+++|+|
T Consensus 300 ~p~~~~----d-----~~~l~~aL~kL~~eD~sl~~~~et~~~l~~gfr~g~lG~lhlei~~erl~~e~~~~~~~~~P~V 370 (599)
T 3cb4_D 300 FPVSSD----D-----YEAFRDALGKLSLNDASLFYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTV 370 (599)
T ss_dssp EESSGG----G-----HHHHHHHHHHHHTTCSSCEEEEEEETTTEEEEEEEESSHHHHHHHHHHHHHTSCCCEEECCCEE
T ss_pred EecCcc----C-----HHHHHHHHHHHHhhCcEEEEEeccccccccceEEEeccHHHHHHHHHHHHHHcCceEEEEeeeE
Confidence 987632 2 5899999999999999999985432 246889999999999999999998 99999999999
Q ss_pred EEEe--eCC------------------eecCcEEEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeech
Q 005713 472 INKK--VND------------------KLLEPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTR 531 (681)
Q Consensus 472 i~~~--~~g------------------~llEP~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~ 531 (681)
+||| .+| .+||||++++|.+|++|+|+||++|++|||++.+|++.+ +++.|+|++|++
T Consensus 371 ~yreti~~g~~~~~~~p~~~p~~~~~~~llEP~~~~~i~~P~e~~G~v~~~~~~rrG~~~~~~~~~--~~~~i~~~~P~~ 448 (599)
T 3cb4_D 371 VYEVETTSREVIYVDSPSKLPAVNNIYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHG--NQVALTYEIPMA 448 (599)
T ss_dssp CEEEEESSSCEEEESSGGGSCCGGGEEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEECCT--TEEEEEEEEEHH
T ss_pred EEEEEecCCceEEecChhhCCCccccchhhccceEEEEEeCHHHHHHHHHHHHHcCcEEeCcEecC--CeEEEEEEecHH
Confidence 9999 456 799999999999999999999999999999999999853 599999999999
Q ss_pred hh-cchHHHHhhcCcceEEEEeeecceeec-CCCCCCcccceEEeCCCccchHHhhhchhhhCCcccc
Q 005713 532 GL-LGLRNAILTASRGTAILNTIFDGYGPW-AGDISTRDQGSLVAFEDGTTTSYALSSSQERGQMFLG 597 (681)
Q Consensus 532 ~l-~gy~~~l~s~T~G~g~~~~~f~~Y~~~-~g~~~~~~~g~~~~~~~g~~t~~~l~~~~~rG~~f~~ 597 (681)
|| +||+++|+|+|+|+|+|+++|+||+|+ .+.+..+.||.+|-- -++--+-..++.||+-++.
T Consensus 449 e~~~~~~~~l~s~T~G~~~~~~~~~~y~~~~~~~~~~~~~g~~v~~---~~~~~~~~~~~~~~~~~~~ 513 (599)
T 3cb4_D 449 EVVLDFFDRLKSTSRGYASLDYNFKRFQASDMVRVDVLINGERVDA---LALITHRDNSQNRGRELVE 513 (599)
T ss_dssp HHHTTTHHHHHHHTTSCCEEEEEEEEEEECCEEEEEEEETTEEEEE---EEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcCCcEEEEEEEecCceEecccccccccCCcEecc---cceeccHHHHHHHHHHHHH
Confidence 99 799999999999999999999999999 589999999998743 4455567777888865443
No 7
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.7e-79 Score=714.60 Aligned_cols=457 Identities=27% Similarity=0.457 Sum_probs=391.4
Q ss_pred cCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccce--eeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCc
Q 005713 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTV--KERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH 162 (681)
Q Consensus 85 ~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~--~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh 162 (681)
+.++++||+|+||+|+|||||+++|+...+.+...+.+ ..+++|+++.|+++|+|+......+.|+++.++|||||||
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH 85 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence 34578999999999999999999999877665443322 2578999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHh-------
Q 005713 163 SDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIEL------- 235 (681)
Q Consensus 163 ~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l------- 235 (681)
.+|..++.++++.+|++|+|+|++++...++..+|..+...++|+++|+||+|+..+++..+++++++.+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~~~~~~~ip 165 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLP 165 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCCCEEESEEE
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCCCceeEEee
Confidence 9999999999999999999999999999999999999999999999999999998877666666666554210
Q ss_pred -------------------------h----------------------------cccc----------------------
Q 005713 236 -------------------------N----------------------------ATDE---------------------- 240 (681)
Q Consensus 236 -------------------------~----------------------------~~~~---------------------- 240 (681)
+ ..++
T Consensus 166 isa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~~l~ 245 (693)
T 2xex_A 166 IGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKEAIR 245 (693)
T ss_dssp ECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred cccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHHHHH
Confidence 0 0000
Q ss_pred -----cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCcc--------------------ccCCceEEEEEE
Q 005713 241 -----QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI--------------------EKDGALQMLATN 295 (681)
Q Consensus 241 -----~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~--------------------~~~~p~~~~V~~ 295 (681)
..-+|++++||++|. |+++||++|++++|+|.. +.++||.++|||
T Consensus 246 ~~~~~~~~~Pv~~gSA~~~~----------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~VfK 315 (693)
T 2xex_A 246 QATTNVEFYPVLCGTAFKNK----------GVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAEFAALAFK 315 (693)
T ss_dssp HHHHTTSCEEEEECBTTTTB----------SHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSCCEEEEEE
T ss_pred HHHHhCCeeeEEEeecccCc----------CHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCceEEEEEE
Confidence 012699999999998 999999999999999964 257899999999
Q ss_pred eeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEecccccccCCeeecc
Q 005713 296 LEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADK 375 (681)
Q Consensus 296 ~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~ 375 (681)
+.+|++.|+++++||+||+|++||.|++...++.. +|.+|+.+.|.+++++++|.|||||+|.|++++.+|||||+.
T Consensus 316 ~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~~~~~---~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~GdTl~~~ 392 (693)
T 2xex_A 316 VMTDPYVGKLTFFRVYSGTMTSGSYVKNSTKGKRE---RVGRLLQMHANSRQEIDTVYSGDIAAAVGLKDTGTGDTLCGE 392 (693)
T ss_dssp EEEETTTEEEEEEEEEESEEETTEEEEETTTTEEE---EECCEEEECSSCEEECSEEETTCEEEEESCSSCCTTCEEEET
T ss_pred eeecCCCceEEEEEEEeeeEecCCEEEecCCCceE---EeceEEEEeCCCceEccccCcCCEEEEeCcccCccCCEEecC
Confidence 99999999999999999999999999998776554 999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCccCCCeeeEEEeecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHHh
Q 005713 376 VSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIE 455 (681)
Q Consensus 376 ~~~~~l~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~e 455 (681)
+.+.+++++++++|++++++++++ ..| .++|.++|.++.++||+|+++.++++++++++|+|||||+|+++
T Consensus 393 ~~~~~~~~~~~~~Pv~~~av~p~~----~~d-----~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g~Gelhlei~~~ 463 (693)
T 2xex_A 393 KNDIILESMEFPEPVIHLSVEPKS----KAD-----QDKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVD 463 (693)
T ss_dssp TCCEECCCCSSCSCSEEEEEEESS----HHH-----HHHHHHHHHHHHHHCTTCEEEC---CCCEEEEESSHHHHHHHHH
T ss_pred CCccccCCcCCCCceEEEEEEeCC----chh-----HHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHH
Confidence 888889999999999999999986 233 68999999999999999999999999999999999999999999
Q ss_pred hhhhc-ceEEEEcCCeeEEEee----------------------------------------------------------
Q 005713 456 NMRRE-GYEFMVGPPKVINKKV---------------------------------------------------------- 476 (681)
Q Consensus 456 ~lrre-g~e~~~~~P~Vi~~~~---------------------------------------------------------- 476 (681)
+|+|+ |+++.+++|+|+|||.
T Consensus 464 rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~~ 543 (693)
T 2xex_A 464 RMKKEFNVECNVGAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPREYIPSVEA 543 (693)
T ss_dssp HHHHHSCCCEEECCCEECCEEEESSCEEEEEEEEECTTSSCEEEEEEEEEEECCTTCCCEEEECCCTTSSCGGGHHHHHH
T ss_pred HHHHHhCceEEEeCCeEEEEEEeccccceeEeeccccCCCCceEEEEEEEEECCCCCCCEEEecCCCCcCCHHHHHHHHH
Confidence 99987 9999999999999980
Q ss_pred -------------------------------C----------------------CeecCcEEEEEEEecCCChhhHHHHH
Q 005713 477 -------------------------------N----------------------DKLLEPYEIATVEVPEEHMGPVVELL 503 (681)
Q Consensus 477 -------------------------------~----------------------g~llEP~~~~~i~vp~~~~G~v~~~l 503 (681)
| ++||||||.++|.||++|+|+||++|
T Consensus 544 g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~G~v~~~l 623 (693)
T 2xex_A 544 GLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMPEEYMGDIMGDV 623 (693)
T ss_dssp HHHHHHHTCSSSSCCBCSEEEEEEEEECCTTTCCHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEEEEEEGGGHHHHHHHH
T ss_pred HHHHHHhcCCccCCceeeEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcCCEEEeeeEEEEEEEcHHHHHHHHHHH
Confidence 0 26899999999999999999999999
Q ss_pred hccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceeecCCCCC
Q 005713 504 GKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWAGDIS 565 (681)
Q Consensus 504 ~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~g~~~ 565 (681)
++|||+|++|++.+ +++.|+|++|++||+||.++|||+|+|+|+|+++|+||+++++++.
T Consensus 624 ~~rrG~i~~~~~~~--~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~ 683 (693)
T 2xex_A 624 TSRRGRVDGMEPRG--NAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVPKSIA 683 (693)
T ss_dssp HHTTCEEEEEEEET--TEEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECCHHHH
T ss_pred HhCCcEeecccccC--CeEEEEEEeCHHHHHhHHHHhHHhcCCceEEEEEeCcceECChhHH
Confidence 99999999999963 6899999999999999999999999999999999999999998653
No 8
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=1.2e-79 Score=715.82 Aligned_cols=455 Identities=30% Similarity=0.455 Sum_probs=348.5
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccce--eeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTV--KERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~--~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d 164 (681)
++++||+|+||+|||||||+++|+...+.+...+.+ ..+++|+++.|+++|+|+......+.|+++.++|||||||.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 468999999999999999999999887766544333 257899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHH----------
Q 005713 165 FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIE---------- 234 (681)
Q Consensus 165 f~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~---------- 234 (681)
|..++.++++.+|++|+|+|++++...++..+|..+...++|+++|+||+|+..+++..+++++.+.+..
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~~~~~~~~Pi~ 169 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIG 169 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEECEEEES
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCCCccceecccc
Confidence 9999999999999999999999999999999999999999999999999999887766666555543320
Q ss_pred --------------------------------------------------hhccc-------------------------
Q 005713 235 --------------------------------------------------LNATD------------------------- 239 (681)
Q Consensus 235 --------------------------------------------------l~~~~------------------------- 239 (681)
+...+
T Consensus 170 ~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~~~~~ 249 (691)
T 1dar_A 170 REDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIRKG 249 (691)
T ss_dssp CGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred CCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 00000
Q ss_pred --ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCcc------------------ccCCceEEEEEEeeec
Q 005713 240 --EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI------------------EKDGALQMLATNLEYD 299 (681)
Q Consensus 240 --~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~------------------~~~~p~~~~V~~~~~d 299 (681)
....+|++++||++|. |+++||++|++++|+|.. +.++||.++|||+.+|
T Consensus 250 ~~~~~~~Pv~~gSA~~~~----------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~~Vfk~~~d 319 (691)
T 1dar_A 250 TIDLKITPVFLGSALKNK----------GVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAALAFKIMAD 319 (691)
T ss_dssp HHTTSCEEEEECBGGGTB----------SHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEEEEEEEEEE
T ss_pred HHhCcEeEEEEeecccCc----------CHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEEEEEEEEEc
Confidence 0012799999999998 999999999999999964 3678999999999999
Q ss_pred CCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEecccccccCCeeeccCCC-
Q 005713 300 EHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSG- 378 (681)
Q Consensus 300 ~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~- 378 (681)
++.|+++++||+||+|++||.|++...++.. +|.+|+.+.|.+++++++|.|||||+|.|++++.+|||||+.+.+
T Consensus 320 ~~~G~~~~~RV~sG~l~~g~~v~~~~~~~~~---~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~ 396 (691)
T 1dar_A 320 PYVGRLTFIRVYSGTLTSGSYVYNTTKGRKE---RVARLLRMHANHREEVEELKAGDLGAVVGLKETITGDTLVGEDAPR 396 (691)
T ss_dssp TTTEEEEEEEEEESEEESSCEEEETTTTEEE---ECCEEEEECSSCEEEESEEETTCEEEEECCSSCCTTCEEEETTCCC
T ss_pred CCCCcEEEEEEeeeeEecCCEEEecCCCcEE---EEceEEEEeCCCceEcceecCCCEEEEeCcccCccCCEEecCCCcc
Confidence 9999999999999999999999998876655 999999999999999999999999999999999999999998887
Q ss_pred CCCCCCccCCCeeeEEEeecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHHhhhh
Q 005713 379 KPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENMR 458 (681)
Q Consensus 379 ~~l~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~e~lr 458 (681)
.+++++++++|++++++++++. .| .++|.++|.++.++||+|+++.++++++++++|+|||||+|++++|+
T Consensus 397 ~~l~~~~~~~P~~~~ai~p~~~----~d-----~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~Gelhlei~~~rL~ 467 (691)
T 1dar_A 397 VILESIEVPEPVIDVAIEPKTK----AD-----QEKLSQALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLK 467 (691)
T ss_dssp CBCC-----------------------------------------CCCCSCEEEC-----CEEEEESCCC---------C
T ss_pred cccCCCCCCCceEEEEEEECCc----hh-----HHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCCHHHHHHHHHHHH
Confidence 8899999999999999998863 23 58999999999999999999999999999999999999999999999
Q ss_pred hc-ceEEEEcCCeeEEEee-------------------------------------------------------------
Q 005713 459 RE-GYEFMVGPPKVINKKV------------------------------------------------------------- 476 (681)
Q Consensus 459 re-g~e~~~~~P~Vi~~~~------------------------------------------------------------- 476 (681)
|+ |+++.+++|+|+|||.
T Consensus 468 ~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~~~~~g~~~p~~~~~~v~~g~~ 547 (691)
T 1dar_A 468 REFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGIE 547 (691)
T ss_dssp CCEEEBTTTBCCCBCCEEECSSCEEEEEEEEECCSSSCEEEEEEEEEEECCTTCCEEEEECCCTTSSCTTTHHHHHHHHH
T ss_pred HhhCceEEEeCCeEEEEEeeccceeeeeeeccccCCCCceEEEEEEEEECCCCCCCEEeecccCCcCcHHHHHHHHHHHH
Confidence 88 9999999999999980
Q ss_pred --------------------------------------------------CCeecCcEEEEEEEecCCChhhHHHHHhcc
Q 005713 477 --------------------------------------------------NDKLLEPYEIATVEVPEEHMGPVVELLGKR 506 (681)
Q Consensus 477 --------------------------------------------------~g~llEP~~~~~i~vp~~~~G~v~~~l~~R 506 (681)
.++||||||.++|.||++|+|+||++|++|
T Consensus 548 ~a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~~~llEPi~~~~i~~p~~~~G~v~~~l~~r 627 (691)
T 1dar_A 548 EAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEEYMGDVIGDLNAR 627 (691)
T ss_dssp HHTTSCTTTSCCBCSEEEEEEEECCCTTTBCHHHHHHHHHHHHHHHHHTSCCEEEEEEEEEEEEECTTTTTHHHHHHHHT
T ss_pred HHHhcCCccCCceeeEEEEEEeeeccccCcchHHHHHHHHHHHHHHHHHcCCEEeeceEEEEEEEcHHHHhHHHHHHHHC
Confidence 037899999999999999999999999999
Q ss_pred CeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceeecCCCCC
Q 005713 507 RGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWAGDIS 565 (681)
Q Consensus 507 rG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~g~~~ 565 (681)
||+|++|++.+ +++.|+|++|++||+||.++|||+|+|+|+|+++|+||+++++++.
T Consensus 628 rG~i~~~~~~~--~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~ 684 (691)
T 1dar_A 628 RGQILGMEPRG--NAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQVQ 684 (691)
T ss_dssp TCCEEEEEEET--TEEEEEEEEETTTSSSHHHHHHHHTTTCCEEEEEEEEEEECCHHHH
T ss_pred CceeecceecC--CeEEEEEEecHHHHhhHHHHHHHhcCCceEEEEEeCcceECChhHH
Confidence 99999999963 6899999999999999999999999999999999999999998653
No 9
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=5.9e-76 Score=682.48 Aligned_cols=453 Identities=23% Similarity=0.340 Sum_probs=407.5
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccce--eeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCcc
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTV--KERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS 163 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~--~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~ 163 (681)
....++|+|+||+|+|||||+++|++..+.....+.+ ...++|..+.|+++|+|+......+.++++.++|||||||.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 3468999999999999999999999877654444333 35678999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHH---------
Q 005713 164 DFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIE--------- 234 (681)
Q Consensus 164 df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~--------- 234 (681)
+|..++.++++.+|++++|+|+.+|+..++..+|+.+...++|+++|+||+|+. .+..++.+++.+.+..
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~~~~~~l~~~l~~~~~~~~Pi~ 164 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYYALLEDLRSTLGPILPIDLPLY 164 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHHHHHHHHHHHHCSEEECEEEEE
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHHHHHHHHHHHhCCcceEEeeec
Confidence 999999999999999999999999999999999999999999999999999998 7776666666654430
Q ss_pred -----------------------------------------------hhcccc---------------------------
Q 005713 235 -----------------------------------------------LNATDE--------------------------- 240 (681)
Q Consensus 235 -----------------------------------------------l~~~~~--------------------------- 240 (681)
+...++
T Consensus 165 ~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~~~~~ 244 (665)
T 2dy1_A 165 EGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHEAVRR 244 (665)
T ss_dssp ETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred CCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Confidence 000000
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccc-cCCceEEEEEEeeecCCCceEEEEEeecccccCCC
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIE-KDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGM 319 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~-~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd 319 (681)
...+|++++||++|. |+.+||++|.+++|+|... .++||.++|+++.++++.|+++++||++|+|++||
T Consensus 245 ~~~~pv~~~SA~~~~----------Gv~~Ll~~i~~~lp~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~sG~l~~g~ 314 (665)
T 2dy1_A 245 GLLYPVALASGEREI----------GVLPLLELILEALPSPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLYRGRLKPGD 314 (665)
T ss_dssp TSCEEEEECBTTTTB----------SHHHHHHHHHHHSCCHHHHHCSCSCEEEEEEEEEETTTEEEEEEEEEESEECTTE
T ss_pred CCeeEEEEeecccCc----------CHHHHHHHHHHhCCCccccCCCCCeEEEEEEEEEcCCCCeEEEEEEcccEEecCC
Confidence 012799999999999 9999999999999999754 68999999999999999999999999999999999
Q ss_pred EEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEecccccccCCeeeccCCC--CCCCCCccCCCeeeEEEee
Q 005713 320 EVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSG--KPLPSIKVEEPTVKMSFSI 397 (681)
Q Consensus 320 ~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~--~~l~~~~~~~P~~~~~~~~ 397 (681)
.|++.+ .. .+|++|+.+.|.++.++++|.|||||+|.|++++.+|||||+.+.+ .+++++++++|++++++.+
T Consensus 315 ~v~~~~--~~---~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~~~Gdtl~~~~~~~~~~l~~~~~~~P~~~~~i~p 389 (665)
T 2dy1_A 315 SLQSEA--GQ---VRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEVPFARLPDPNVPVALHP 389 (665)
T ss_dssp EEBCTT--SC---EEESSEEEEETTEEEEESCEETTCEEEESSCTTCCTTCEEESSSCCCGGGSCCCCCCCCCEEEEEEE
T ss_pred EEEcCC--Ce---EEEeEEEEEeCCCeeECCEECCCCEEEEeCCccCccCCEEecCCCccccccCCCCCCCceEEEEEEE
Confidence 999876 33 4999999999999999999999999999999999999999998877 7899999999999999999
Q ss_pred cCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHHhhhhhcceEEEEcCCeeEEEee-
Q 005713 398 NTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENMRREGYEFMVGPPKVINKKV- 476 (681)
Q Consensus 398 ~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~e~lrreg~e~~~~~P~Vi~~~~- 476 (681)
++ ..+ .++|.++|.++.++||+|+|+.++++++++++|+|||||+|++++|+++|+++.+++|+|+|||.
T Consensus 390 ~~----~~d-----~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~~~~v~v~~~~p~V~yrEti 460 (665)
T 2dy1_A 390 KG----RTD-----EARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQDYGVEVEFSVPKVPYRETI 460 (665)
T ss_dssp SS----HHH-----HHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHHHTTCCEEEECCCCCCEEEE
T ss_pred CC----hhh-----HHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHHHHHHHHHHHCCceEEEeCCEEEEEEee
Confidence 76 334 68999999999999999999999999999999999999999999999669999999999999981
Q ss_pred ------------------------------------------------------------------------------CC
Q 005713 477 ------------------------------------------------------------------------------ND 478 (681)
Q Consensus 477 ------------------------------------------------------------------------------~g 478 (681)
||
T Consensus 461 ~~~~~~~~~~~k~~gg~g~~~~v~~~~eP~~g~~f~~~~~~g~~~~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg 540 (665)
T 2dy1_A 461 KKVAEGQGKYKKQTGGHGQYGDVWLRLEPASEYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGFPVMGFKAIVYNG 540 (665)
T ss_dssp SSCEEEEEEEEEEETTEEEEEEEEEEEEECSSCEEEECCCTTSSCGGGHHHHHHHHHHHHTSCTTTSCCBCSEEEEEEEE
T ss_pred ccceeeeeecccccCCCcceEEEEEEEEECCCCEEeeeccCCcchHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEee
Confidence 00
Q ss_pred -----------------------------eecCcEEEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEee
Q 005713 479 -----------------------------KLLEPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIP 529 (681)
Q Consensus 479 -----------------------------~llEP~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP 529 (681)
++|||||.++|.||++|+|+||++|++|||+|++|++.+ +++.|+|++|
T Consensus 541 ~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i~~~~~~~--~~~~i~a~~P 618 (665)
T 2dy1_A 541 SYHEVDSSDLAFQIAASLAFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRILGMEQEG--ALSVVHAEVP 618 (665)
T ss_dssp ECCTTTBCHHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEET--TEEEEEEEEE
T ss_pred eccCCCCCHHHHHHHHHHHHHHHHhhCCCEEEeeeEEEEEEECHHHHHHHHHHHHHCCCEEeCcEecC--CeEEEEEEEC
Confidence 589999999999999999999999999999999999963 7999999999
Q ss_pred chhhcchHHHHhhcCcceEEEEeeecceeecCCCCC
Q 005713 530 TRGLLGLRNAILTASRGTAILNTIFDGYGPWAGDIS 565 (681)
Q Consensus 530 ~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~~g~~~ 565 (681)
++||+||.++|||+|+|+|+|+++|+||+++++++.
T Consensus 619 ~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~ 654 (665)
T 2dy1_A 619 LAEVLEYYKALPGLTGGAGAYTLEFSHYAEVPPHLA 654 (665)
T ss_dssp GGGCTTHHHHHHHHHTTCCEEEEEEEEEEECCHHHH
T ss_pred HHHHhhHHHHhHhhcCCcEEEEEEeCceeECCccHH
Confidence 999999999999999999999999999999998753
No 10
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=3.7e-74 Score=682.23 Aligned_cols=472 Identities=27% Similarity=0.426 Sum_probs=384.8
Q ss_pred cCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC--------------
Q 005713 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN-------------- 150 (681)
Q Consensus 85 ~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-------------- 150 (681)
...+++||+|+||+|||||||+++|+...+.+........+++|+++.|++||+|+.+....+.|+
T Consensus 15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~ 94 (842)
T 1n0u_A 15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD 94 (842)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccccccc
Confidence 455789999999999999999999999887766554444688999999999999999988888876
Q ss_pred --CeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCC----Cc---
Q 005713 151 --DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSA----RP--- 221 (681)
Q Consensus 151 --~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~----~~--- 221 (681)
++.++|||||||.+|..++.++++.+|++|+|||+++|+..|+..+|..+...++|+++|+||+|+... ++
T Consensus 95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~e~ 174 (842)
T 1n0u_A 95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDL 174 (842)
T ss_dssp SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHHH
T ss_pred CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999998632 22
Q ss_pred ----ccchhhHHHHHHHhhcc------cccCCceEEEeecccCCCCC------------------------------C--
Q 005713 222 ----DYVINSTFELFIELNAT------DEQCDFQAIYASGIQGKAGL------------------------------S-- 259 (681)
Q Consensus 222 ----~~~~~ei~~~~~~l~~~------~~~~~~pvi~~SA~~G~~~~------------------------------~-- 259 (681)
..+++++...+..+... ......++.++||++||+.. .
T Consensus 175 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~~ 254 (842)
T 1n0u_A 175 YQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKT 254 (842)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETTT
T ss_pred HHHHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCCC
Confidence 23333333333221110 11112368889998886420 0
Q ss_pred --------CCC-------------------------------------CCCC------------------------cchh
Q 005713 260 --------PDN-------------------------------------LADD------------------------LGPL 270 (681)
Q Consensus 260 --------~~~-------------------------------------~~~g------------------------i~~L 270 (681)
+.. .... +.+|
T Consensus 255 ~~~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~pv~~~L 334 (842)
T 1n0u_A 255 KKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADAL 334 (842)
T ss_dssp TEEESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHSBHHHHH
T ss_pred CeEEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhccchHHHH
Confidence 000 0001 2779
Q ss_pred HHHHHhhCCCCc-------------------------cccCCceEEEEEEeeecCCCce-EEEEEeecccccCCCEEEEc
Q 005713 271 FESIMRCIPGPR-------------------------IEKDGALQMLATNLEYDEHKGR-IAIGRLHAGVLRKGMEVRVC 324 (681)
Q Consensus 271 l~~I~~~lp~p~-------------------------~~~~~p~~~~V~~~~~d~~~G~-v~~grV~sG~lk~gd~v~~~ 324 (681)
|++|++++|+|. +++++||.++|||+.++++.|+ ++++||+||+|++||.|++.
T Consensus 335 Ld~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v~ 414 (842)
T 1n0u_A 335 LEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQ 414 (842)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEE
T ss_pred HHHHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEec
Confidence 999999999995 2567899999999999999995 99999999999999999776
Q ss_pred cCC------CceeeeEEEeEEEeeccceeecceecCCCEEEEecccccccC-CeeeccCCCCCCCCCccC-CCeeeEEEe
Q 005713 325 TSE------DSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIG-ETIADKVSGKPLPSIKVE-EPTVKMSFS 396 (681)
Q Consensus 325 ~~~------~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~G-dtl~~~~~~~~l~~~~~~-~P~~~~~~~ 396 (681)
+.+ ......||.+|+.+.|.+++++++|.|||||+|.|++++.+| +|||+.+.+.+++++.++ +|+++++++
T Consensus 415 ~~~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~~~~~l~~~~~~~~Pv~~~ave 494 (842)
T 1n0u_A 415 GPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVAVE 494 (842)
T ss_dssp CTTCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCTTCCCBCCCCCCCSCCEEEEEE
T ss_pred cccccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecCCCCccccccCCCCCCceEEEEEE
Confidence 443 222245999999999999999999999999999999998665 799998887888888877 699999999
Q ss_pred ecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHHhhhhhc--ceEEEEcCCeeEEE
Q 005713 397 INTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENMRRE--GYEFMVGPPKVINK 474 (681)
Q Consensus 397 ~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~e~lrre--g~e~~~~~P~Vi~~ 474 (681)
+.+ ..+ .++|.++|.++.++||+|+|+.+ ++++++++|+|||||+|++++|+|+ |+|+.+++|+|+||
T Consensus 495 p~~----~~d-----~~kl~~~L~kL~~eDp~l~v~~~-etge~il~g~GelHLei~~~rL~~~f~~vev~~~~P~V~yr 564 (842)
T 1n0u_A 495 VKN----AND-----LPKLVEGLKRLSKSDPCVLTYMS-ESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYR 564 (842)
T ss_dssp ESS----GGG-----HHHHHHHHHHHHHHCTTCEEEEC-TTSCEEEEESSHHHHHHHHHHHHHTTSCSCEEEECCCCCCE
T ss_pred ECC----HHH-----HHHHHHHHHHHHHhCCcEEEEEc-CCCCEEEEeccHHHHHHHHHHHHHHhcCCceEecCcEEEEE
Confidence 875 333 78999999999999999999998 7899999999999999999999987 99999999999998
Q ss_pred e-------e------------------------------C----------------------------------------
Q 005713 475 K-------V------------------------------N---------------------------------------- 477 (681)
Q Consensus 475 ~-------~------------------------------~---------------------------------------- 477 (681)
| . +
T Consensus 565 ETi~~~~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~iw~~~p~~~~~~ 644 (842)
T 1n0u_A 565 ETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPN 644 (842)
T ss_dssp EEESSCCSSCEEEECTTSSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHTEEEESSTTTSSE
T ss_pred EeeccccccceeeccCCcceEEEEEEEECcHHHhhHhhcCeecccccHHHHHHHHHHhcCcchhhhhceeeeccCCCCCc
Confidence 7 0 0
Q ss_pred -------C----------------------------------------------------------------------ee
Q 005713 478 -------D----------------------------------------------------------------------KL 480 (681)
Q Consensus 478 -------g----------------------------------------------------------------------~l 480 (681)
| +|
T Consensus 645 ~f~~~~~g~~~~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~~~a~~~a~~~a~p~L 724 (842)
T 1n0u_A 645 LVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKI 724 (842)
T ss_dssp EEEECCCCCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHHHHHHHHHSCEEE
T ss_pred EEEecCCCccccHHHHHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCCccccchhHHHHHHHHHHHHHHHhCCCeE
Confidence 0 68
Q ss_pred cCcEEEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEeeecceeec
Q 005713 481 LEPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPW 560 (681)
Q Consensus 481 lEP~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~~f~~Y~~~ 560 (681)
|||||.|+|.||++|+|+||++|++|||+|+++++.+++++..|++++|++||+||.++|||+|+|+|+|+++|+||+++
T Consensus 725 LEPi~~veI~vP~e~~G~V~~dL~~RRG~i~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~~~~~F~~y~~v 804 (842)
T 1n0u_A 725 QEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTL 804 (842)
T ss_dssp EEEEEEEEEEECGGGHHHHHHHHHTTTCEEEEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEEC
T ss_pred EeeEEEEEEEccHHHHHHHHHHHHhcCcEEeccccCCCCceEEEEEEcChHHhhhhHHHHHhhCCCCceEEEEeccceeC
Confidence 99999999999999999999999999999999998644468999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 005713 561 AGDIST 566 (681)
Q Consensus 561 ~g~~~~ 566 (681)
+++...
T Consensus 805 p~~~~~ 810 (842)
T 1n0u_A 805 GSDPLD 810 (842)
T ss_dssp CSCTTC
T ss_pred CCCccc
Confidence 998764
No 11
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=7e-69 Score=608.91 Aligned_cols=366 Identities=22% Similarity=0.354 Sum_probs=312.8
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCcccccccee------eeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCC
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK------ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTP 160 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~------~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTP 160 (681)
.++|||+|+||+|||||||+++||+.+|.+...+.+. +++||++++|++|||||.++.+++.|++++|||||||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 3689999999999999999999999999887655543 5799999999999999999999999999999999999
Q ss_pred CccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhh----
Q 005713 161 GHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN---- 236 (681)
Q Consensus 161 Gh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~---- 236 (681)
||.||..+++++|+++|+||+||||.+|+++||+.+|++|.++++|+|+|+||||+..+++.++++++++.|....
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~~~~p~~ 188 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQIECAPMT 188 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTSEEEESE
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCCceEeEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988763100
Q ss_pred ----c-----------------------------------c----------------------------------cccCC
Q 005713 237 ----A-----------------------------------T----------------------------------DEQCD 243 (681)
Q Consensus 237 ----~-----------------------------------~----------------------------------~~~~~ 243 (681)
. . .....
T Consensus 189 ~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~g~~ 268 (548)
T 3vqt_A 189 WPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLKGEL 268 (548)
T ss_dssp EEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHHTTSE
T ss_pred eeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHHhCCc
Confidence 0 0 00113
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCcc---------ccCCceEEEEEEeeec---CCCceEEEEEee
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI---------EKDGALQMLATNLEYD---EHKGRIAIGRLH 311 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~---------~~~~p~~~~V~~~~~d---~~~G~v~~grV~ 311 (681)
+|++++||++|. |+.+||++|++++|+|.. +.+.||.++||++.++ ++.|+++++||+
T Consensus 269 ~PV~~gSA~~~~----------Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Grla~~RV~ 338 (548)
T 3vqt_A 269 TPVFFGSAINNF----------GVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDRMAFLRIC 338 (548)
T ss_dssp EEEEECBGGGTB----------SHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------CEEEEEEE
T ss_pred ceeeecccccCc----------CHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCeEEEEEEe
Confidence 799999999999 999999999999999964 2367999999999887 899999999999
Q ss_pred cccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEecccccccCCeeeccCCCCCCCCCccCCCee
Q 005713 312 AGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPTV 391 (681)
Q Consensus 312 sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~P~~ 391 (681)
||+|++|+.|++...++++ ||.+++.+.|.+++++++|.|||||+|.|++++.+|||||+...+.+++++++++|++
T Consensus 339 sG~l~~g~~v~~~~~~~~~---rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GDTl~~~~~~~~~~~i~~~~P~~ 415 (548)
T 3vqt_A 339 SGTFTRGMRLKHHRTGKDV---TVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVLKFVGIPNFAPEH 415 (548)
T ss_dssp ESCEETTCEEEETTTTEEE---ECTTCEECCCSSCCSSCEECTTCEEEEECSSCCCTTCEEESSSSCCCBCCCEEECCSE
T ss_pred cceecCCCEEEeecccccc---ccchhhhhccccccccCEEecCCEEEecCCccCccCCEecCCCCccccCCCCCCCCcc
Confidence 9999999999999888776 9999999999999999999999999999999999999999988888899999999999
Q ss_pred eEEEeecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHHhhhhhc-ceEEE-----
Q 005713 392 KMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENMRRE-GYEFM----- 465 (681)
Q Consensus 392 ~~~~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~e~lrre-g~e~~----- 465 (681)
++++.+++ ..+ ..++.++|.++.++|+ +++..++++++++|+|+|||||+|++++|+|| |+|+.
T Consensus 416 ~~av~p~~----~~d-----~~kl~~~L~~L~eed~-~~v~~~~et~e~il~g~GeLHLeI~~erL~~ey~vev~~e~v~ 485 (548)
T 3vqt_A 416 FRRVRLKN----PLK-----AKQLQKGLEQLAEEGA-VQLFRPLVNNDYILGAVGVLQFDVIVARLADEYGVDAVYEGVS 485 (548)
T ss_dssp EEEEEESC----GGG-----HHHHHHHHHHHHHTTS-SEEEEESSSCCCEEEESSTHHHHHHHHHHHHHHCCCEEEEECS
T ss_pred eeeeeeCC----chh-----HHHHHHHHHHhhhcCc-eeEEEECCCCcEEEEEECHHHHHHHHHHHHHHhCCCEEEeecc
Confidence 99999876 233 6899999999998887 67777888999999999999999999999987 88865
Q ss_pred EcCCeeEEEe
Q 005713 466 VGPPKVINKK 475 (681)
Q Consensus 466 ~~~P~Vi~~~ 475 (681)
++.|+|+|||
T Consensus 486 ~~~P~V~YrE 495 (548)
T 3vqt_A 486 THTARWVYCE 495 (548)
T ss_dssp CCEEEEEECS
T ss_pred ccCceEEecC
Confidence 5789999998
No 12
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=1.2e-57 Score=514.25 Aligned_cols=407 Identities=22% Similarity=0.330 Sum_probs=341.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccce------eeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCC
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTV------KERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPG 161 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~------~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPG 161 (681)
+++||+|+||+|+|||||+++|++..+.+...+.+ ...++|+.+.|+++|+|+......+.|+++.++||||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 58999999999999999999999888776544432 245789999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhc----
Q 005713 162 HSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNA---- 237 (681)
Q Consensus 162 h~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~---- 237 (681)
|.+|..++.++++.+|++|+|+|+++++..++..+|..+...++|+++|+||+|+..+++.+.++++.+.+.....
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~~~~~~~ 171 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIHCAPVTW 171 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESEE
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCCceeeec
Confidence 9999999999999999999999999999999999999999999999999999999887776666666554421000
Q ss_pred -------------------------------------------------------------------------ccccCCc
Q 005713 238 -------------------------------------------------------------------------TDEQCDF 244 (681)
Q Consensus 238 -------------------------------------------------------------------------~~~~~~~ 244 (681)
......+
T Consensus 172 pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~ 251 (528)
T 3tr5_A 172 PIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYLKGELT 251 (528)
T ss_dssp EESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHHHTTSEE
T ss_pred ccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHhcCcee
Confidence 0001124
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccc---------cCCceEEEEEEeee--cC-CCceEEEEEeec
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIE---------KDGALQMLATNLEY--DE-HKGRIAIGRLHA 312 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~---------~~~p~~~~V~~~~~--d~-~~G~v~~grV~s 312 (681)
|++++||++|. |+.+||++|.+++|+|... .+.||.++|||+.. |+ +.|+++++||+|
T Consensus 252 PV~~gSA~~~~----------GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~l~~~RV~s 321 (528)
T 3tr5_A 252 PIFFGSAINNF----------GVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDRIAFLRIAS 321 (528)
T ss_dssp EEEECBGGGTB----------SHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCEEEEEEEEE
T ss_pred EEEeccccCCc----------cHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCceEEEEEEec
Confidence 99999999999 9999999999999999643 25899999999985 88 999999999999
Q ss_pred ccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEecccccccCCeeeccCCCCCCCCCccCCCeee
Q 005713 313 GVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPTVK 392 (681)
Q Consensus 313 G~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~P~~~ 392 (681)
|+|++||.|++.+.++.. ||.+++.+.|.++.++++|.|||||++.|++++++|||||+. .+..+++++.++|+++
T Consensus 322 G~l~~g~~v~~~~~~~~~---rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~~~GDtl~~~-~~~~~~~~~~~~P~~~ 397 (528)
T 3tr5_A 322 GQYQKGMKAYHVRLKKEI---QINNALTFMAGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQG-ERFKFTGIPNFASELF 397 (528)
T ss_dssp SCEETTEEEEETTTTEEE---EESSCBCCBTTCSSCCSEECTTCEEEEEESSSCCTTCEEESS-CCCCBCCCEEECCSEE
T ss_pred CeEcCCCEEEecCCCceE---EEeeeEEEeCCCeeECCEECCCCEEEEcCCCCCccCCEEcCC-CCcccCCCCCCCCCEE
Confidence 999999999999988765 999999999999999999999999999999999999999984 4456677788889999
Q ss_pred EEEeecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHHhhhhhc-ceEEEEcCCee
Q 005713 393 MSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENMRRE-GYEFMVGPPKV 471 (681)
Q Consensus 393 ~~~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~e~lrre-g~e~~~~~P~V 471 (681)
+++.+.+ ..+ .++|.++|.++.++|++ ++..++++++++++|+|+|||+|++++|++| |+++.+++|+|
T Consensus 398 ~~i~~~~----~~d-----~~kl~~aL~~L~~ED~~-~~~~~~~~~~~il~~~G~lhlev~~~rL~~ey~v~v~~~~~~v 467 (528)
T 3tr5_A 398 RLVRLKD----PLK-----QKALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRLENEYNVKCVYESVNV 467 (528)
T ss_dssp EEEEESC----GGG-----HHHHHHHHHHHHHTTSC-EEEEETTCCCEEEEESSTHHHHHHHHHHHHHHCCCEEEECCSC
T ss_pred EEEEECC----hhH-----HHHHHHHHHHHHhcCCe-EEEEcCCCCCEEEEEEcHHHHHHHHHHHHHHhCcEEEEecCce
Confidence 9998754 233 68999999999999985 8888888999999999999999999999877 99999999999
Q ss_pred EEEeeCCeecCcEEEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHH
Q 005713 472 INKKVNDKLLEPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRN 538 (681)
Q Consensus 472 i~~~~~g~llEP~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~ 538 (681)
.|++ .|++++. .-++.+.+..+..+-.+. .| +..|..|....+.|..
T Consensus 468 ~~~~------------~i~~~~~---~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~ 514 (528)
T 3tr5_A 468 VTAR------------WVICDDK---AVLERFNQEQSRNLAYDG---GG--HLTYLAPSRVNLEITM 514 (528)
T ss_dssp CEEE------------EEECSCH---HHHHHHHHHSGGGEEEET---TC--CEEEEESSHHHHHHHH
T ss_pred EEEE------------EecCCCH---hHHHHHhhhhcceEEEcC---CC--CEEEEEcCHHHHHHHH
Confidence 9986 3555432 355666555544433332 23 3456777776665543
No 13
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=1.4e-57 Score=514.15 Aligned_cols=407 Identities=21% Similarity=0.324 Sum_probs=315.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCcccccccee------eeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCC
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK------ERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPG 161 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~------~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPG 161 (681)
+.+||+|+||+|+|||||+++|+...+.+...+.+. .+++|+++.|+++|+|+......+.|+++.++||||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 579999999999999999999998766654333322 56889999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHh------
Q 005713 162 HSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIEL------ 235 (681)
Q Consensus 162 h~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l------ 235 (681)
|.+|..++.++++.+|++|+|+|+.+++..++..+|..+...++|+++|+||+|+..++..++++++.+.+..-
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~~~~~~~ 171 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIGCAPITW 171 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCEEEESEE
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCCccceec
Confidence 99999999999999999999999999999999999999999999999999999998776655555555433100
Q ss_pred --------------------------hc--------------------c--------------------------cccCC
Q 005713 236 --------------------------NA--------------------T--------------------------DEQCD 243 (681)
Q Consensus 236 --------------------------~~--------------------~--------------------------~~~~~ 243 (681)
+. . .....
T Consensus 172 pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~ 251 (529)
T 2h5e_A 172 PIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLAGEI 251 (529)
T ss_dssp EESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHHHHTTSE
T ss_pred ceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHHHHhCce
Confidence 00 0 00113
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCcccc---------CCceEEEEEEeee---cCCCceEEEEEee
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEK---------DGALQMLATNLEY---DEHKGRIAIGRLH 311 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~---------~~p~~~~V~~~~~---d~~~G~v~~grV~ 311 (681)
+|++++||++|. |+.+||++|.+++|+|.... ++||.++|||+.. +++.|++++|||+
T Consensus 252 ~Pv~~gSA~~~~----------Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~i~~~RV~ 321 (529)
T 2h5e_A 252 TPVFFGTALGNF----------GVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVV 321 (529)
T ss_dssp EEEEECBTTTTB----------SHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCCCEEEEEE
T ss_pred eEEEeeecccCC----------CHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCceEEEEEEe
Confidence 699999999998 99999999999999996421 4799999999976 4679999999999
Q ss_pred cccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEecccccccCCeeeccCCCCCCCCCccCCCee
Q 005713 312 AGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPTV 391 (681)
Q Consensus 312 sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~~~Gdtl~~~~~~~~l~~~~~~~P~~ 391 (681)
||+|++||.|++.+.++.. ||++|+.+.|.+++++++|.|||||+|.|++++.+|||||+.+ +..++++++++|++
T Consensus 322 sG~l~~g~~v~~~~~~~~~---~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~-~~~~~~~~~~~P~~ 397 (529)
T 2h5e_A 322 SGKYEKGMKLRQVRTAKDV---VISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGE-MMKFTGIPNFAPEL 397 (529)
T ss_dssp ESCEETTCEEEETTTTEEE---ECSCEECCCC-----CCEECTTCEEEECCSSCCCTTCEEESSC-CCCBCCCEEECCSE
T ss_pred cCeEcCCCEEEEeeCCCEE---EeceeeEEeCCCceEcceECCCCEEEEeccCCCccCCEeecCC-ccccCCCCCCCccE
Confidence 9999999999999987655 9999999999999999999999999999999999999999876 46788888999999
Q ss_pred eEEEeecCCCCCcccCccccHHHHHHHHHHHHhccceEEEEECCCCCceEEecccchhhhhHHhhhhhc-ceEEEEcCCe
Q 005713 392 KMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENMRRE-GYEFMVGPPK 470 (681)
Q Consensus 392 ~~~~~~~~~~~~g~~~~~~~~~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gelhl~il~e~lrre-g~e~~~~~P~ 470 (681)
++++.+.+ ..+ .++|.++|.++.++|+ +++..++++++++|+|+|+|||+|++++|+|| |+++.+++|+
T Consensus 398 ~~~v~~~~----~~d-----~~kl~~~L~~L~~ed~-~~~~~~~~t~~~il~~~Gelhlev~~~rl~~ey~v~v~~~~~~ 467 (529)
T 2h5e_A 398 FRRIRLKD----PLK-----QKQLLKGLVQLSEEGA-VQVFRPISNNDLIVGAVGVLQFDVVVARLKSEYNVEAVYESVN 467 (529)
T ss_dssp EEEEEESC----C--------CTHHHHHHHHHHTTS-CEEEEETTSCCEEEEESSTHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred EEEEEECC----hHH-----HHHHHHHHHHHHhhCC-EEEEEeCCCCcEEEEEECHHHHHHHHHHHHHHhCcEEEEecCc
Confidence 99999765 222 5789999999999996 99999999999999999999999999999887 9999999999
Q ss_pred eEEEeeCCeecCcEEEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHH
Q 005713 471 VINKKVNDKLLEPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRN 538 (681)
Q Consensus 471 Vi~~~~~g~llEP~~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~ 538 (681)
|.||| +|.+++ ...++.+....+..+-.+ ..| ...|..|...-+.|..
T Consensus 468 v~y~e------------ti~~~~---~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~ 515 (529)
T 2h5e_A 468 VATAR------------WVECAD---AKKFEEFKRKNESQLALD---GGD--NLAYIATSMVNLRLAQ 515 (529)
T ss_dssp CSEEE------------EEECSC---HHHHHHHHHHSGGGEEEC---TTC--CEEEEESSHHHHHHHH
T ss_pred eeEEE------------EEcCCc---hhhHHHHhhhccCeEEEe---CCC--CEEEEEeCHHHHHHHH
Confidence 99998 555542 233555555544332222 122 4566777766665543
No 14
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=5.4e-39 Score=355.85 Aligned_cols=281 Identities=20% Similarity=0.320 Sum_probs=234.1
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccc---------------eeeeeeccchhhcccceeEEeeeeEEeeCC
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQT---------------VKERIMDSNDLERERGITILSKNTSITYND 151 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~---------------~~~~~~D~~~~E~erGiTi~~~~~~~~~~~ 151 (681)
...+||+++||+|+|||||+++|++..+.+..... .-++++|..+.|+++|+|++.....+.+++
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 45789999999999999999999998776543321 115689999999999999999999999999
Q ss_pred eEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCc-------hhhHHHHHHHHHcCCE-EEEEEeecCCCCCC---
Q 005713 152 TKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPM-------PQTRFVLKKALEFGHA-VVVVVNKIDRPSAR--- 220 (681)
Q Consensus 152 ~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~-------~qt~~~l~~~~~~gip-~ivviNKiD~~~~~--- 220 (681)
+.++|||||||.+|...+..+++.+|++|||||+.+|.+ .||++++..+...++| +|+|+||+|+...+
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~ 174 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 174 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHH
Confidence 999999999999999999999999999999999999987 7999999999999998 89999999996432
Q ss_pred --cccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCC-CCCCcchhHHHHHhhCCCCccccCCceEEEEEEee
Q 005713 221 --PDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDN-LADDLGPLFESIMRCIPGPRIEKDGALQMLATNLE 297 (681)
Q Consensus 221 --~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~-~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~ 297 (681)
++++.+++.+++..++.... .++|++++||++|.|+.++.+ ..|.-.+.|..+++.+|+|....+.||++.|.+++
T Consensus 175 ~~~~~i~~~~~~~l~~~g~~~~-~~~~~i~iSA~~G~ni~~l~~~~~w~~g~~L~~~l~~i~~~~~~~~~p~r~~v~~~~ 253 (439)
T 3j2k_7 175 ERYEECKEKLVPFLKKVGFNPK-KDIHFMPCSGLTGANLKEQSDFCPWYIGLPFIPYLDNLPNFNRSVDGPIRLPIVDKY 253 (439)
T ss_pred HHHHHHHHHHHHHHHHhccccc-CCeeEEEeeccCCcccccccccccccCchHHHHHHHhCCCCccCCCCCeEEEEEEEE
Confidence 34555666666666654321 257899999999998776542 23333333445667788888888999999999987
Q ss_pred ecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEE--eccc--ccccCCeee
Q 005713 298 YDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGID--DIQIGETIA 373 (681)
Q Consensus 298 ~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~--~~~~Gdtl~ 373 (681)
. +.|+++.|||.+|+|++||.|.+.|.+... +|++|+. ++.++++|.|||+|++ .|++ ++++||+|+
T Consensus 254 ~--~~G~v~~G~v~~G~l~~Gd~v~~~p~~~~~---~V~~i~~----~~~~~~~a~aG~~v~~~l~gi~~~~i~rG~vl~ 324 (439)
T 3j2k_7 254 K--DMGTVVLGKLESGSIFKGQQLVMMPNKHNV---EVLGILS----DDTETDFVAPGENLKIRLKGIEEEEILPGFILC 324 (439)
T ss_pred c--CCCeEEEEEEEeeEEecCCEEEEccCCceE---EEEEEEE----CCeEcCEecCCCcceEEEeccchhhcCCcEEec
Confidence 6 579999999999999999999999998765 9999954 5678999999999995 6766 788899999
Q ss_pred ccCC
Q 005713 374 DKVS 377 (681)
Q Consensus 374 ~~~~ 377 (681)
++++
T Consensus 325 ~~~~ 328 (439)
T 3j2k_7 325 DPSN 328 (439)
T ss_pred CCCC
Confidence 8765
No 15
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=5.1e-39 Score=352.01 Aligned_cols=280 Identities=27% Similarity=0.345 Sum_probs=228.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
..||+++||+|||||||+++|++.............+.+|....|+++|+|+......+.+++..++|||||||.+|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 57899999999999999999997532111111111235788899999999999988888888999999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCE-EEEEEeecCCCCC--CcccchhhHHHHHHHhhcccccCCce
Q 005713 169 VERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSA--RPDYVINSTFELFIELNATDEQCDFQ 245 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip-~ivviNKiD~~~~--~~~~~~~ei~~~~~~l~~~~~~~~~p 245 (681)
+.++++.+|++|||||+++|.+.||+++|..+...++| +++|+||+|+.+. .++.+.+++++++..++... .++|
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~ 160 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG--EETP 160 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT--TTSC
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc--ccCc
Confidence 99999999999999999999999999999999999999 6899999998752 12234456666666554321 2478
Q ss_pred EEEeecccCCCCCCCCCCCCC-cchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEc
Q 005713 246 AIYASGIQGKAGLSPDNLADD-LGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVC 324 (681)
Q Consensus 246 vi~~SA~~G~~~~~~~~~~~g-i~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~ 324 (681)
++++||++|.|..+. .+..+ +.+|++.|.+++|+|..+.++||+++|++++++++.|++++|||++|+|++||.|.+.
T Consensus 161 ~i~~SA~~g~n~~~~-~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~ 239 (397)
T 1d2e_A 161 IIVGSALCALEQRDP-ELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFL 239 (397)
T ss_dssp EEECCHHHHHTTCCT-TTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEEEE
T ss_pred EEEeehhhcccccCC-CccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceEeCCCEEEEe
Confidence 999999998864221 11224 7899999999999998888999999999999999999999999999999999999998
Q ss_pred cCCCceeeeEEEeEEEeeccceeecceecCCCEEEEe--cc--cccccCCeeeccC
Q 005713 325 TSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC--GI--DDIQIGETIADKV 376 (681)
Q Consensus 325 ~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~--gl--~~~~~Gdtl~~~~ 376 (681)
+.+.. ...+|++|..+ +.++++|.|||+|++. |+ +++.+||+|++++
T Consensus 240 ~~~~~-~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~ 290 (397)
T 1d2e_A 240 GHSKN-IRTVVTGIEMF----HKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPG 290 (397)
T ss_dssp ETTEE-EEEEEEEEEET----TEEESEEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred CCCCC-eEEEEEEEEEC----CcccCEecCCCceEEEecccchhccCceeEEeCCC
Confidence 87521 23589999654 4788999999999985 65 6899999999865
No 16
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=1.2e-38 Score=350.06 Aligned_cols=284 Identities=26% Similarity=0.356 Sum_probs=229.7
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCcccc-ccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRD-NQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~-~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
...+||+++||+|+|||||+++|++....... ........+|.++.|+++|+|+......+.+++..++|||||||.+|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 35689999999999999999999974211100 00111236899999999999999988889999999999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCE-EEEEEeecCCCCCC--cccchhhHHHHHHHhhcccccC
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSAR--PDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip-~ivviNKiD~~~~~--~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
...+.++++.+|++|+|+|+.++.+.|++++|..+...++| +++|+||+|+.+.. .+.+.+++.+++..++... .
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~--~ 166 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG--D 166 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT--T
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccc--c
Confidence 99999999999999999999999999999999999999999 88999999997521 2233445566665554321 2
Q ss_pred CceEEEeecccCCCCCCC--------CCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCceEEEEEeeccc
Q 005713 243 DFQAIYASGIQGKAGLSP--------DNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGV 314 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~--------~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~ 314 (681)
++|++++||++|.++.+. ..+..++.+|++.|.+++|+|..+.++||+++|++++++++.|++++|||++|+
T Consensus 167 ~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~ 246 (405)
T 2c78_A 167 EVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGK 246 (405)
T ss_dssp TSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCCEEECCEEEEETTTEEEEEEECCBSE
T ss_pred CCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCCcEEEEEEEEEcCCCceEEEEEEeccc
Confidence 468999999999852110 011112789999999999999888899999999999999999999999999999
Q ss_pred ccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEe--cc--cccccCCeeeccC
Q 005713 315 LRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC--GI--DDIQIGETIADKV 376 (681)
Q Consensus 315 lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~--gl--~~~~~Gdtl~~~~ 376 (681)
|++||.|.+.+.+......+|++|..+ +.++++|.|||+|++. |+ +++.+||+|++++
T Consensus 247 l~~gd~v~~~~~~~~~~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~~~ 308 (405)
T 2c78_A 247 VKVGDEVEIVGLAPETRKTVVTGVEMH----RKTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPG 308 (405)
T ss_dssp EETTCEEEEESSSSSCEEEEEEEEEET----TEEESEEETTCEEEEEESSCCTTTCCTTCEEESTT
T ss_pred ccCCCEEEEeCCCCCeeeEEEEEEEEC----CcccCEEcCCCEEEEEECCCcHhhcCceEEEEcCC
Confidence 999999999988741123599999643 4789999999999985 65 6899999999765
No 17
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=2.5e-38 Score=350.48 Aligned_cols=281 Identities=22% Similarity=0.268 Sum_probs=220.3
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccc---------------eeeeeeccchhhcccceeEEeeeeEEeeCC
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQT---------------VKERIMDSNDLERERGITILSKNTSITYND 151 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~---------------~~~~~~D~~~~E~erGiTi~~~~~~~~~~~ 151 (681)
...+||+++||+|+|||||+++|++..+.+..... .-.+++|..++|+++|+|+......+.+++
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45789999999999999999999987654432210 002568999999999999999999999999
Q ss_pred eEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCC-------CchhhHHHHHHHHHcCC-EEEEEEeecCCCCCC---
Q 005713 152 TKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-------PMPQTRFVLKKALEFGH-AVVVVVNKIDRPSAR--- 220 (681)
Q Consensus 152 ~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g-------~~~qt~~~l~~~~~~gi-p~ivviNKiD~~~~~--- 220 (681)
+.++|||||||.+|...+..+++.+|++|||||+.+| .+.|+++++..+...++ ++|+|+||+|+.+++
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 163 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 163 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccH
Confidence 9999999999999999999999999999999999998 78899999999999997 489999999998632
Q ss_pred --cccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCC-CCCc-chhHHHHHhhCCCCccccCCceEEEEEEe
Q 005713 221 --PDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNL-ADDL-GPLFESIMRCIPGPRIEKDGALQMLATNL 296 (681)
Q Consensus 221 --~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~-~~gi-~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~ 296 (681)
++.+.+++.+++..++... .++|++++||++|.|+.+.... .|.- ..|++++ +.+++|....+.||++.|..+
T Consensus 164 ~~~~~~~~~i~~~~~~~~~~~--~~~~~i~iSA~~g~~v~e~~~~~~~~~g~~Ll~~l-~~~~~p~~~~~~~~~~~v~~v 240 (435)
T 1jny_A 164 KRYKEIVDQVSKFMRSYGFNT--NKVRFVPVVAPSGDNITHKSENMKWYNGPTLEEYL-DQLELPPKPVDKPLRIPIQDV 240 (435)
T ss_dssp HHHHHHHHHHHHHHHHTTCCC--TTCEEEECBTTTTBTTTBCCSSCTTCCSCCHHHHH-TTCCCCCCGGGSCCBEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCc--CCceEEEeecccCccccccccccccccchhHHHHH-hccCCCCCCCCCCeEEEEEEE
Confidence 2345566666666554322 2478999999999987655421 1111 3678875 456777767789999999999
Q ss_pred eecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEe--c--ccccccCCee
Q 005713 297 EYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC--G--IDDIQIGETI 372 (681)
Q Consensus 297 ~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~--g--l~~~~~Gdtl 372 (681)
++.++.|++++|||++|+|++||.|.+.+.+... +|++|+.+ +.++++|.|||+|++. | .+++.+||+|
T Consensus 241 ~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~---~V~~i~~~----~~~~~~a~aG~~v~~~l~g~~~~~i~~Gd~l 313 (435)
T 1jny_A 241 YSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVG---EVRSIETH----HTKMDKAEPGDNIGFNVRGVEKKDIKRGDVV 313 (435)
T ss_dssp EEETTTEEEEEEECCBSCEETTCEEEEETTTEEE---EEEEEEET----TEEESEECTTCEEEEEEESSCGGGCCTTCEE
T ss_pred EEeCCCcEEEEEEEecCeEEcCCEEEECCceeEE---EEEEEEEC----CcEEeEEcCCCEEEEEEecCCHHHcCCccEe
Confidence 9999999999999999999999999999987654 99999653 5789999999999983 4 4689999999
Q ss_pred eccCC
Q 005713 373 ADKVS 377 (681)
Q Consensus 373 ~~~~~ 377 (681)
++.+.
T Consensus 314 ~~~~~ 318 (435)
T 1jny_A 314 GHPNN 318 (435)
T ss_dssp ECTTS
T ss_pred cCCCC
Confidence 98753
No 18
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=4.3e-38 Score=351.31 Aligned_cols=281 Identities=21% Similarity=0.257 Sum_probs=198.8
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccc------------c---ceeeeeeccchhhcccceeEEeeeeEEeeCC
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN------------Q---TVKERIMDSNDLERERGITILSKNTSITYND 151 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~------------~---~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~ 151 (681)
...+||+++||+|||||||+++|++..+.+... + ....+++|..+.|+++|+|+......+.+++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 457899999999999999999999877654321 0 1114678999999999999999999999999
Q ss_pred eEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCc-------hhhHHHHHHHHHcCCE-EEEEEeecCCCCCC---
Q 005713 152 TKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPM-------PQTRFVLKKALEFGHA-VVVVVNKIDRPSAR--- 220 (681)
Q Consensus 152 ~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~-------~qt~~~l~~~~~~gip-~ivviNKiD~~~~~--- 220 (681)
..++|||||||.+|...+.++++.+|++|||||+.+|.+ .||++++..+...++| +|||+||+|+...+
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 999999999999999999999999999999999999874 7999999999999998 99999999996533
Q ss_pred --cccchhhHHHHHHHh-hcccccCCceEEEeecccCCCCCCCCC---CCCCc-chhHHHHHhhCCCCccccCCceEEEE
Q 005713 221 --PDYVINSTFELFIEL-NATDEQCDFQAIYASGIQGKAGLSPDN---LADDL-GPLFESIMRCIPGPRIEKDGALQMLA 293 (681)
Q Consensus 221 --~~~~~~ei~~~~~~l-~~~~~~~~~pvi~~SA~~G~~~~~~~~---~~~gi-~~Ll~~I~~~lp~p~~~~~~p~~~~V 293 (681)
++.+.+++.+++..+ +... ..++|++++||++|.|+.++.+ ..|.- ..|+ .+++.+|+|..+.+.||+++|
T Consensus 201 ~~~~~i~~e~~~~l~~~~g~~~-~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~-~~l~~i~~~~~~~~~p~~~~v 278 (467)
T 1r5b_A 201 ERYKECVDKLSMFLRRVAGYNS-KTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLL-EYLDSMTHLERKVNAPFIMPI 278 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCH-HHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHH-HHHHHCCCCHHHHTSCCEEEC
T ss_pred HHHHHHHHHHHHHHHHhcCCCc-cCCceEEecccccccccccccccccCccccchhHH-HHHHhCCCCcCCCCCCcEEEE
Confidence 234555666666554 3320 1146899999999998876541 22221 2344 556778988877889999999
Q ss_pred EEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEE--ec-ccccccCC
Q 005713 294 TNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CG-IDDIQIGE 370 (681)
Q Consensus 294 ~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~g-l~~~~~Gd 370 (681)
.+++.+ .|++++|||.+|+|++||.|.+.|.+... +|++|+.+ .+.++++|.|||+|++ +| .+++.+||
T Consensus 279 ~~~~~~--~G~v~~G~v~~G~l~~gd~v~~~p~~~~~---~V~~i~~~---~~~~~~~a~aG~~v~i~l~g~~~~i~rG~ 350 (467)
T 1r5b_A 279 ASKYKD--LGTILEGKIEAGSIKKNSNVLVMPINQTL---EVTAIYDE---ADEEISSSICGDQVRLRVRGDDSDVQTGY 350 (467)
T ss_dssp CEEEES--SSEEEEEECCBSEEETTEEEEEETTTEEE---EEEEEECT---TCCEESEEETTCEEEEEEESCCTTCCTTC
T ss_pred EEEEeC--CCeEEEEEEeeeEEeeCCEEEEccCCeeE---EEEEEecc---CCcEeeEEcCCCEEEEEEeccHhhCCceE
Confidence 999764 68999999999999999999999987554 89999642 3678999999999999 56 66899999
Q ss_pred eeeccCC
Q 005713 371 TIADKVS 377 (681)
Q Consensus 371 tl~~~~~ 377 (681)
+|++.++
T Consensus 351 vl~~~~~ 357 (467)
T 1r5b_A 351 VLTSTKN 357 (467)
T ss_dssp EEECSSS
T ss_pred EEeCCCC
Confidence 9998654
No 19
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=1.7e-37 Score=348.26 Aligned_cols=286 Identities=21% Similarity=0.304 Sum_probs=221.9
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCcccccc---------------ceeeeeeccchhhcccceeEEeeeeEEeeCC
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQ---------------TVKERIMDSNDLERERGITILSKNTSITYND 151 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~---------------~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~ 151 (681)
....||+++|++|+|||||+++|++..+.+.... ....+++|....|+++|+|++.....+.+++
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 3578999999999999999999999866544221 1125679999999999999999999999999
Q ss_pred eEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCC-------CchhhHHHHHHHHHcCCE-EEEEEeecCCCCCC---
Q 005713 152 TKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-------PMPQTRFVLKKALEFGHA-VVVVVNKIDRPSAR--- 220 (681)
Q Consensus 152 ~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g-------~~~qt~~~l~~~~~~gip-~ivviNKiD~~~~~--- 220 (681)
+.++|||||||.+|...+..+++.+|++|||||+.+| ...|+++++..+...+++ +|||+||+|+.+.+
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~ 190 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 190 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHH
Confidence 9999999999999999999999999999999999998 668999999999999965 99999999997643
Q ss_pred cccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCC--------CCCcchhHHHHHhhCCC--CccccCCceE
Q 005713 221 PDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNL--------ADDLGPLFESIMRCIPG--PRIEKDGALQ 290 (681)
Q Consensus 221 ~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~--------~~gi~~Ll~~I~~~lp~--p~~~~~~p~~ 290 (681)
++++.+++.+++..++... ..+|++++||++|.|+.++... ...+.++|+.+...+|+ |....+.||+
T Consensus 191 ~~~i~~~~~~~l~~~g~~~--~~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r 268 (483)
T 3p26_A 191 FEEIKSKLLPYLVDIGFFE--DNINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFL 268 (483)
T ss_dssp HHHHHHHHHHHHHHHTCCG--GGEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCE
T ss_pred HHHHHHHHHHHHHHcCCCc--ccceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCceE
Confidence 3444555566665555432 2468999999999988765421 12355677777777765 6667789999
Q ss_pred EEEEEeeecC---CCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEee----ccceeecceecCCCEEEE--e
Q 005713 291 MLATNLEYDE---HKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYE----KFSRVSAEIVAAGDICAV--C 361 (681)
Q Consensus 291 ~~V~~~~~d~---~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~----g~~~~~v~~a~aGdiv~i--~ 361 (681)
+.|..++..+ +.|+++.|||.+|+|++||.|.+.|.+... +|++|+.+. |.++.++++|.|||+|+| .
T Consensus 269 ~~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~~~~---~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~~l~ 345 (483)
T 3p26_A 269 FSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSC---IVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKLR 345 (483)
T ss_dssp EEEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTTEEE---EEEEEEETTTC-----CCEESCEETTCEEEEEEE
T ss_pred EEEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCCCeE---EEEEEEEcCccccccccccccEECCCCEEEEEEE
Confidence 9999999987 489999999999999999999999998765 999998763 566789999999999999 3
Q ss_pred c--ccccccCCeeeccCC
Q 005713 362 G--IDDIQIGETIADKVS 377 (681)
Q Consensus 362 g--l~~~~~Gdtl~~~~~ 377 (681)
+ .+++++||+|++.++
T Consensus 346 ~~~~~di~rG~vl~~~~~ 363 (483)
T 3p26_A 346 KAYPEDIQNGDLAASVDY 363 (483)
T ss_dssp SCCGGGCCTTCEEECTTC
T ss_pred ecccccCCceEEEEcCCC
Confidence 4 478999999998765
No 20
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-38 Score=363.36 Aligned_cols=281 Identities=20% Similarity=0.266 Sum_probs=191.5
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccc---------------eeeeeeccchhhcccceeEEeeeeEEeeC
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQT---------------VKERIMDSNDLERERGITILSKNTSITYN 150 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~---------------~~~~~~D~~~~E~erGiTi~~~~~~~~~~ 150 (681)
...++||+|+||+|+|||||+++|++..+.+..... ...+++|..+.|+++|+|+......+.++
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 446789999999999999999999987665543210 11578999999999999999999999999
Q ss_pred CeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCC-------chhhHHHHHHHHHcCCE-EEEEEeecCCCCCC--
Q 005713 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGP-------MPQTRFVLKKALEFGHA-VVVVVNKIDRPSAR-- 220 (681)
Q Consensus 151 ~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~-------~~qt~~~l~~~~~~gip-~ivviNKiD~~~~~-- 220 (681)
++.++|||||||.+|...+..+++.+|++|||||+.+|. +.||++++..+...++| +|||+||+|+.+++
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~ 333 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSED 333 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHH
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHH
Confidence 999999999999999999999999999999999999854 89999999999999997 99999999997643
Q ss_pred -cccchhhHHHHH-HHhhcccccCCceEEEeecccCCCCCCCCC---CCCC-cchhHHHHHhhCCCCccccCCceEEEEE
Q 005713 221 -PDYVINSTFELF-IELNATDEQCDFQAIYASGIQGKAGLSPDN---LADD-LGPLFESIMRCIPGPRIEKDGALQMLAT 294 (681)
Q Consensus 221 -~~~~~~ei~~~~-~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~---~~~g-i~~Ll~~I~~~lp~p~~~~~~p~~~~V~ 294 (681)
++.+.+++.+++ ..++... ..+|++++||++|.|+.++.. ..|. ...|++.|...+| |..+.+.||++.|.
T Consensus 334 ~~~~i~~el~~~l~~~~g~~~--~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p-p~~~~~~p~r~~v~ 410 (592)
T 3mca_A 334 RFQEIKNIVSDFLIKMVGFKT--SNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP-PEKPYRKPLRLSID 410 (592)
T ss_dssp HHHHHHHHHHHHHTTTSCCCG--GGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC-CSCTTTSCCEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCCCc--cceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc-ccccccccchheee
Confidence 233444444444 3333321 246899999999997765432 1221 2378888877766 55677899999999
Q ss_pred EeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecc-eecCCCEEEE--eccc--ccccC
Q 005713 295 NLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAE-IVAAGDICAV--CGID--DIQIG 369 (681)
Q Consensus 295 ~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~-~a~aGdiv~i--~gl~--~~~~G 369 (681)
++++. +.|++++|+|.+|+|++||.|.+.|.+... +|++|+. ++.+++ +|.|||+|+| .|++ ++++|
T Consensus 411 ~v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~~~~---~V~~i~~----~~~~~~~~a~aG~~v~~~l~~i~~~~i~rG 482 (592)
T 3mca_A 411 DVYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQEDA---YVKNVIR----NSDPSSTWAVAGDTVTLQLADIEVNQLRPG 482 (592)
T ss_dssp EEEEE-TTEEEEEEEEEESEEETTCEEEETTTTEEE---EEEEEEC----SSSCSCCEEETTCEEEEEESSSCGGGCCTT
T ss_pred EEEec-CCeEEEEEEEeeeeEccCCEEEEccCCceE---EEEEEEE----cCccCcceecCCCEEEEEEccccccccceE
Confidence 99999 999999999999999999999999988765 9999964 557899 9999999997 5654 79999
Q ss_pred CeeeccCC
Q 005713 370 ETIADKVS 377 (681)
Q Consensus 370 dtl~~~~~ 377 (681)
|+||+++.
T Consensus 483 ~vl~~~~~ 490 (592)
T 3mca_A 483 DILSNYEN 490 (592)
T ss_dssp CEEECSSS
T ss_pred EEeccCCC
Confidence 99998764
No 21
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=2.3e-37 Score=344.55 Aligned_cols=280 Identities=21% Similarity=0.283 Sum_probs=230.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccc------------cc---eeeeeeccchhhcccceeEEeeeeEEeeCCe
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN------------QT---VKERIMDSNDLERERGITILSKNTSITYNDT 152 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~------------~~---~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~ 152 (681)
...+|+++||+|+|||||+++|++..+.+... +. .-.+++|..+.|+++|+|++.....+.++++
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 46899999999999999999999875443221 00 0134679999999999999999999999999
Q ss_pred EEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCch-------hhHHHHHHHHHcCCE-EEEEEeecCCCCCC---c
Q 005713 153 KINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMP-------QTRFVLKKALEFGHA-VVVVVNKIDRPSAR---P 221 (681)
Q Consensus 153 ~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~-------qt~~~l~~~~~~gip-~ivviNKiD~~~~~---~ 221 (681)
.++|||||||.+|...+..+++.+|++|||||+.+|.++ |+++++..+...++| +|+|+||+|+.+.+ +
T Consensus 86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~ 165 (458)
T 1f60_A 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRF 165 (458)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHH
T ss_pred eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHH
Confidence 999999999999999999999999999999999998766 999999999999986 89999999997432 2
Q ss_pred ccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCC-CCC-------------cchhHHHHHhhCCCCccccCC
Q 005713 222 DYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNL-ADD-------------LGPLFESIMRCIPGPRIEKDG 287 (681)
Q Consensus 222 ~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~-~~g-------------i~~Ll~~I~~~lp~p~~~~~~ 287 (681)
+.+.+++.+++..++... .++|++++||++|.|+.+.... .|. ...|++. ++.+++|....+.
T Consensus 166 ~~i~~~~~~~l~~~g~~~--~~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~-l~~~~~p~~~~~~ 242 (458)
T 1f60_A 166 QEIVKETSNFIKKVGYNP--KTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEA-IDAIEQPSRPTDK 242 (458)
T ss_dssp HHHHHHHHHHHHHHTCCG--GGCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHH-HHTSCCCCCCTTS
T ss_pred HHHHHHHHHHHHHcCCCc--cCceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHH-hhccCCCcccCCC
Confidence 345566666666655421 1368999999999998765432 221 2367787 4567888878899
Q ss_pred ceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEE--ecc--
Q 005713 288 ALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGI-- 363 (681)
Q Consensus 288 p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~gl-- 363 (681)
||+++|.+++++++.|++++|||.+|++++||.|.+.|.+... +|++|.. ++.++++|.|||+|+| .|+
T Consensus 243 p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~~~~---~V~~i~~----~~~~~~~a~aG~~v~i~l~gi~~ 315 (458)
T 1f60_A 243 PLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAGVTT---EVKSVEM----HHEQLEQGVPGDNVGFNVKNVSV 315 (458)
T ss_dssp CCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTTEEE---EEEEEEE----TTEECSCBCTTCEEEEEESSCCT
T ss_pred CcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCCceE---EEeEEEE----CCeEEEEEcCCCEEEEEEcCCcc
Confidence 9999999999999999999999999999999999999987554 8999964 3468899999999998 465
Q ss_pred cccccCCeeeccCC
Q 005713 364 DDIQIGETIADKVS 377 (681)
Q Consensus 364 ~~~~~Gdtl~~~~~ 377 (681)
++++.||+|++.++
T Consensus 316 ~~i~rG~vl~~~~~ 329 (458)
T 1f60_A 316 KEIRRGNVCGDAKN 329 (458)
T ss_dssp TTSCTTCEEEETTS
T ss_pred cccCceeEEecCCC
Confidence 58999999998764
No 22
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=3.4e-36 Score=333.31 Aligned_cols=281 Identities=21% Similarity=0.270 Sum_probs=221.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccc------------ccee-----eeeeccchhhcccceeEEeeeeEEeeC
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN------------QTVK-----ERIMDSNDLERERGITILSKNTSITYN 150 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~------------~~~~-----~~~~D~~~~E~erGiTi~~~~~~~~~~ 150 (681)
..++|+++||+|||||||+++|++..+.+... ++.. .+++|..++|+++|+|+......+.++
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 46899999999999999999999886543221 1111 245899999999999999999999999
Q ss_pred CeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCC-EEEEEEeecCCCCCCc---ccchh
Q 005713 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGH-AVVVVVNKIDRPSARP---DYVIN 226 (681)
Q Consensus 151 ~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gi-p~ivviNKiD~~~~~~---~~~~~ 226 (681)
+..++|||||||.+|...+..+++.+|++|||+|+.++.+.|+++++..+...++ |+|+|+||+|+.+++. +.+.+
T Consensus 103 ~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~ 182 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKA 182 (434)
T ss_dssp SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHH
T ss_pred CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999997 5899999999986432 23445
Q ss_pred hHHHHHHHhhcccccCCceEEEeecccCCCCCCCCC-CCCCcchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCceE
Q 005713 227 STFELFIELNATDEQCDFQAIYASGIQGKAGLSPDN-LADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRI 305 (681)
Q Consensus 227 ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~-~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v 305 (681)
++.+++..++.. ..+++++++||++|.|+.+... ..|.-.+.|..+++.+|+|..+.+.||++.|..++...+.|+.
T Consensus 183 ~~~~~~~~~g~~--~~~~~~i~vSA~~g~gi~~~~~~~~w~~g~~L~~~l~~i~~~~~~~~~~~~~~v~~v~~~~~~~~g 260 (434)
T 1zun_B 183 DYLKFAEGIAFK--PTTMAFVPMSALKGDNVVNKSERSPWYAGQSLMEILETVEIASDRNYTDLRFPVQYVNRPNLNFRG 260 (434)
T ss_dssp HHHHHHHTTTCC--CSEEEEEECCTTTCTTTSSCCTTCTTCCSCCTTHHHHHSCCTTCCCSSSCEEECCEEECSSSSCCE
T ss_pred HHHHHHHHhCCC--ccCceEEEEeccCCCCcccccccCccccCchHHHHHhcCCCcccCCCCCcEEEEEEEeccCCCceE
Confidence 555555544410 1246899999999998776542 2222223234466778888877889999999999888788888
Q ss_pred EEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEeccc--ccccCCeeeccCC
Q 005713 306 AIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGID--DIQIGETIADKVS 377 (681)
Q Consensus 306 ~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~--~~~~Gdtl~~~~~ 377 (681)
..|+|.+|+|++||.|.+.+.+... +|++|+.+. .++++|.|||+|++.+.+ ++.+||+|++.+.
T Consensus 261 ~~G~v~~G~l~~gd~v~~~p~~~~~---~V~~i~~~~----~~~~~a~aG~~v~~~l~~~~~i~~G~~l~~~~~ 327 (434)
T 1zun_B 261 FAGTLASGIVHKGDEIVVLPSGKSS---RVKSIVTFE----GELEQAGPGQAVTLTMEDEIDISRGDLLVHADN 327 (434)
T ss_dssp EEEECCBSCEETTCEEEETTTCCEE---EEEEEEETT----EEESEECTTCEEEEEESSCCCCCTTCEEEETTS
T ss_pred EEEEEecceEeCCCEEEEecCCeEE---EEEEEEEcC----cceeEecCCCEEEEEeCCccccCCccEEECCCC
Confidence 9999999999999999999987654 999997653 479999999999997644 6889999998764
No 23
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=9.9e-37 Score=360.26 Aligned_cols=283 Identities=24% Similarity=0.331 Sum_probs=216.0
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
.....||+++||+|+|||||+++|++.............+.+|.++.|+++|+|+......+.+++..++|||||||.+|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 34568999999999999999999987532111001111236888999999999999988889989999999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCE-EEEEEeecCCCCCC--cccchhhHHHHHHHhhcccccC
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPSAR--PDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip-~ivviNKiD~~~~~--~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
...+..+++.+|++|||||+.+|.+.||++++..+...++| +|||+||+|+.+.. .+.+.+++.+++..++... .
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~--~ 450 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG--D 450 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCT--T
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccc--c
Confidence 99999999999999999999999999999999999999999 78999999997521 2234456666666655321 2
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEE
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVR 322 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~ 322 (681)
++|++++||++|++. ...+..|+.+|++.|.+++|+|..+.++||+++|.+++.+++.|++++|+|++|+|++||.|.
T Consensus 451 ~vp~IpvSAktG~ng--~~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvGD~V~ 528 (1289)
T 3avx_A 451 DTPIVRGSALKALEG--DAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVE 528 (1289)
T ss_dssp TCCEEECCSTTTTTC--CHHHHHHHHHHHHHHHHTSCCCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETTCEEE
T ss_pred ceeEEEEEeccCCCC--CccccccchhhHhHHhhhcCCCccccccceeeeccccccccCCcEEEEEEEeccEEecCCEEE
Confidence 578999999999531 001123688999999999999988889999999999999999999999999999999999999
Q ss_pred EccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEe--cc--cccccCCeeeccCC
Q 005713 323 VCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC--GI--DDIQIGETIADKVS 377 (681)
Q Consensus 323 ~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~--gl--~~~~~Gdtl~~~~~ 377 (681)
+.+.+.. ...+|++|.. .+.++++|.|||+|++. |+ +++.+||+|++++.
T Consensus 529 I~ps~~~-~~~kVksI~~----~~~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~~ 582 (1289)
T 3avx_A 529 IVGIKET-QKSTCTGVEM----FRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGT 582 (1289)
T ss_dssp EESSSSC-EEEEEEEEEC----SSCEESEEETTCEEEEEESSCCGGGCCTTCEEESTTS
T ss_pred EecCCCc-eeEEEEEEee----cCceeeEEecCCcceeEeeecchhcCCcccEEecCCC
Confidence 9988732 1348999954 45689999999999984 65 68999999997653
No 24
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-37 Score=350.24 Aligned_cols=287 Identities=21% Similarity=0.293 Sum_probs=232.9
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccc---------------cceeeeeeccchhhcccceeEEeeeeEEeeC
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN---------------QTVKERIMDSNDLERERGITILSKNTSITYN 150 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~---------------~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~ 150 (681)
.....+|+++||+|+|||||+++|++..+.+... .....+++|....|+++|+|+......+.++
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 3457899999999999999999999876654332 1112567899999999999999999999999
Q ss_pred CeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCC-------CchhhHHHHHHHHHcCCE-EEEEEeecCCCCCC--
Q 005713 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-------PMPQTRFVLKKALEFGHA-VVVVVNKIDRPSAR-- 220 (681)
Q Consensus 151 ~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g-------~~~qt~~~l~~~~~~gip-~ivviNKiD~~~~~-- 220 (681)
++.++|||||||.+|...+..+++.+|++|+|||+.+| ...|+++++..+...++| +|||+||+|+.+.+
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~ 323 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 323 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHH
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHH
Confidence 99999999999999999999999999999999999986 568999999999999975 89999999998643
Q ss_pred -cccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCC----CCCC----cchhHHHHHhhCCC--CccccCCce
Q 005713 221 -PDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDN----LADD----LGPLFESIMRCIPG--PRIEKDGAL 289 (681)
Q Consensus 221 -~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~----~~~g----i~~Ll~~I~~~lp~--p~~~~~~p~ 289 (681)
++++.+++..++..++.... .+|++++||++|.|+.++.. ..|. +.++|+.+...+|. |....+.||
T Consensus 324 ~~~ei~~~l~~~l~~~g~~~~--~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~ 401 (611)
T 3izq_1 324 RFEEIKSKLLPYLVDIGFFED--NINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPF 401 (611)
T ss_dssp HHHHHHHHHHHHHHHHTCCGG--GCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCC
T ss_pred HHHHHHHHHHHHHHhhccccc--CccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccch
Confidence 34455566666665554322 46899999999998877642 2332 23333333333443 455678999
Q ss_pred EEEEEEeeecC---CCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEee----ccceeecceecCCCEEEE--
Q 005713 290 QMLATNLEYDE---HKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYE----KFSRVSAEIVAAGDICAV-- 360 (681)
Q Consensus 290 ~~~V~~~~~d~---~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~----g~~~~~v~~a~aGdiv~i-- 360 (681)
++.|..++..+ +.|+++.|||.+|+|++||.|.+.|.+... +|++|+.+. |.++.++++|.|||+|+|
T Consensus 402 r~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~~~~---~VksI~~~~~~~~~~~~~~v~~A~aGd~v~l~l 478 (611)
T 3izq_1 402 LFSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSEQSC---IVDKIQVGSQQGQSTNHEETDVAIKGDFVTLKL 478 (611)
T ss_dssp EEECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTTEEE---EEEEEECSSCCSCSSSCCCCCCEETTCEEEEEE
T ss_pred hhheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCCceE---EEEEEEEcccccccccccccceecCCCcceEEe
Confidence 99999999987 589999999999999999999999998765 999998763 667889999999999999
Q ss_pred ec--ccccccCCeeeccCC
Q 005713 361 CG--IDDIQIGETIADKVS 377 (681)
Q Consensus 361 ~g--l~~~~~Gdtl~~~~~ 377 (681)
.| ..++++||+||+.++
T Consensus 479 ~~~~~~di~rGdvl~~~~~ 497 (611)
T 3izq_1 479 RKAYPEDIQNGDLAASVDY 497 (611)
T ss_dssp SSCCTTSCCTTCEEBCSTT
T ss_pred eeccHhhCcceEEccCCCC
Confidence 34 468999999998765
No 25
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=3.9e-35 Score=322.63 Aligned_cols=261 Identities=24% Similarity=0.291 Sum_probs=208.3
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC---------------
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--------------- 150 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--------------- 150 (681)
....+||+++||+|||||||+++|++. ..|....|+++|+|+......+.+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~-------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~ 73 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGV-------------WTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCP 73 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTC-------------CCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCT
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCC-------------ccccChhhhcCCcEEEEeeeeeeccccccccccccccccc
Confidence 345789999999999999999999742 2356678999999997765544431
Q ss_pred --------CeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCC-chhhHHHHHHHHHcCC-EEEEEEeecCCCCCC
Q 005713 151 --------DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEFGH-AVVVVVNKIDRPSAR 220 (681)
Q Consensus 151 --------~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~~gi-p~ivviNKiD~~~~~ 220 (681)
...++|||||||.+|...+.+.+..+|++|||||+.+|. +.||++++..+..+++ |+++|+||+|+.+.+
T Consensus 74 ~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~ 153 (410)
T 1kk1_A 74 YCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKE 153 (410)
T ss_dssp TTCCBCEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH
T ss_pred ccCcccccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHH
Confidence 168999999999999999999999999999999999997 9999999999988886 689999999987643
Q ss_pred -cccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeee-
Q 005713 221 -PDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEY- 298 (681)
Q Consensus 221 -~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~- 298 (681)
..+..+++.+++... ....+|++++||++|. |+..|++.|.+++|.|..+.+.|++++|.+.+.
T Consensus 154 ~~~~~~~~i~~~l~~~----~~~~~~~i~vSA~~g~----------gi~~L~~~l~~~~~~p~~~~~~~~~~~v~~~f~v 219 (410)
T 1kk1_A 154 KALENYRQIKEFIEGT----VAENAPIIPISALHGA----------NIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFDV 219 (410)
T ss_dssp HHHHHHHHHHHHHTTS----TTTTCCEEECBTTTTB----------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHhc----CcCCCeEEEeeCCCCC----------CHHHHHHHHHHhCCCCccccCCCcEEEEEEEEec
Confidence 122334444443321 1235789999999999 999999999999999988888999999998764
Q ss_pred -------cCCCceEEEEEeecccccCCCEEEEccCCCce---------eeeEEEeEEEeeccceeecceecCCCEEEEe-
Q 005713 299 -------DEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSC---------RYARISELFVYEKFSRVSAEIVAAGDICAVC- 361 (681)
Q Consensus 299 -------d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~---------~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~- 361 (681)
+++.|++++|+|++|+|++||.|.+.|.+... ...+|++|+. ++.++++|.|||+|++.
T Consensus 220 ~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~----~~~~v~~a~aG~~v~~~~ 295 (410)
T 1kk1_A 220 NKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQA----GGQFVEEAYPGGLVGVGT 295 (410)
T ss_dssp SCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEE----TTEEESEECSSSCEEEEE
T ss_pred cCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEE----CCeEecEEcCCCEEEEEE
Confidence 45689999999999999999999998754210 1358888853 45789999999999995
Q ss_pred ----cc--cccccCCeeeccCC
Q 005713 362 ----GI--DDIQIGETIADKVS 377 (681)
Q Consensus 362 ----gl--~~~~~Gdtl~~~~~ 377 (681)
++ .++.+||+|++++.
T Consensus 296 ~~~~~~~~~d~~~G~vl~~~~~ 317 (410)
T 1kk1_A 296 KLDPYLTKGDLMAGNVVGKPGK 317 (410)
T ss_dssp SSCGGGTGGGTTTTCEEECTTC
T ss_pred ecCcccchhhccceeEEecCCC
Confidence 22 46788999997654
No 26
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=2.9e-35 Score=318.51 Aligned_cols=237 Identities=14% Similarity=0.136 Sum_probs=199.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHH
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVE 170 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~ 170 (681)
||+++||+|+|||||+++|+ ++|+|+......+.++++.++|||||||.+|...+.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------------------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~ 78 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------------------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLI 78 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------------------------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH------------------------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHH
Confidence 99999999999999999996 458999999999999999999999999999999999
Q ss_pred HHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEE-EEEEe-ecCCCCCC-cccchhhHHHHHHHhhcccccCCceEE
Q 005713 171 RILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAV-VVVVN-KIDRPSAR-PDYVINSTFELFIELNATDEQCDFQAI 247 (681)
Q Consensus 171 ~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~-ivviN-KiD~~~~~-~~~~~~ei~~~~~~l~~~~~~~~~pvi 247 (681)
.+++.+|++||||| .+|.++||++++..+...++|. |+|+| |+|+ +.+ .+++.+++++++...+ ...+|++
T Consensus 79 ~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~----~~~~~ii 152 (370)
T 2elf_A 79 TALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTV----LQDWECI 152 (370)
T ss_dssp HHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTST----TTTCEEE
T ss_pred HHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcC----CCceEEE
Confidence 99999999999999 9999999999999999999998 99999 9998 432 1223344444443222 1257999
Q ss_pred E--eeccc---CCCCCCCCCCCCCcchhHHHHHhhCCCCcc---c-cCCceEEEEEEeeecCCCceEEEEEeecccccCC
Q 005713 248 Y--ASGIQ---GKAGLSPDNLADDLGPLFESIMRCIPGPRI---E-KDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKG 318 (681)
Q Consensus 248 ~--~SA~~---G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~---~-~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~g 318 (681)
+ +||++ |. |+.+|++.|.+++|++.. . ...|++++|..++..++.|++++|||++|+|++|
T Consensus 153 ~~~~SA~~~~~g~----------gi~~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~~g 222 (370)
T 2elf_A 153 SLNTNKSAKNPFE----------GVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISKDK 222 (370)
T ss_dssp ECCCCTTSSSTTT----------THHHHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEETT
T ss_pred ecccccccCcCCC----------CHHHHHHHHHhhccccccCCcccccccccccceeEEEcCCCceEEEEEEECCEEeeC
Confidence 9 99999 76 999999999999876521 1 3456788899999999999999999999999999
Q ss_pred CEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEe--c--ccccccCCeeec
Q 005713 319 MEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC--G--IDDIQIGETIAD 374 (681)
Q Consensus 319 d~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~--g--l~~~~~Gdtl~~ 374 (681)
|.|.+.|.+... +|++|+.+ ..++++|.|||+|++. | .+++.+||+|++
T Consensus 223 d~v~~~p~~~~~---~V~~i~~~----~~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~ 275 (370)
T 2elf_A 223 DKTKIFPLDRDI---EIRSIQSH----DVDIDSAPAGTRVGMRLKNVQAKDIERGFIISD 275 (370)
T ss_dssp CEEEEETTTEEE---EEEEEEET----TEEESEEETTCEEEEEEESCCGGGCCTTCEEES
T ss_pred CEEEECCCCcEE---EEeEEEEC----CCCccEEcCCCcceEEEeccCHHHcCCceEEEC
Confidence 999999987654 99999653 4789999999999996 5 468999999997
No 27
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=1.2e-35 Score=332.61 Aligned_cols=256 Identities=23% Similarity=0.321 Sum_probs=205.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
+..+|+++||+|+|||||+++|++... ...+|....|+++|+|++.....+.+++..++|||||||.+|..
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~---------~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~ 88 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIAS---------TSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIR 88 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC-----------------------------CCCEEEETTEEEEECCCSSHHHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCc---------ccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHH
Confidence 468999999999999999999986431 24578888999999999999999999999999999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCC-CcccchhhHHHHHHHh-hcccccCCce
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSA-RPDYVINSTFELFIEL-NATDEQCDFQ 245 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~-~~~~~~~ei~~~~~~l-~~~~~~~~~p 245 (681)
.+..+++.+|++|||+|+.+|+++||++++..+...++|.|+|+||+|+.+. +.+.+.+++.+++... +. .++|
T Consensus 89 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~----~~~~ 164 (482)
T 1wb1_A 89 AVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNL----KNSS 164 (482)
T ss_dssp HHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSG----GGCC
T ss_pred HHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhccc----ccce
Confidence 9999999999999999999999999999999999999999999999999753 2344455555555443 22 1468
Q ss_pred EEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC--ccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEE
Q 005713 246 AIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP--RIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRV 323 (681)
Q Consensus 246 vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p--~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~ 323 (681)
++++||++|. |+.+|++.|.+.++.| ..+.++||++.|.+++..++.|+++.|+|.+|+|++||.|.+
T Consensus 165 ii~vSA~~g~----------gI~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~~ 234 (482)
T 1wb1_A 165 IIPISAKTGF----------GVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELKV 234 (482)
T ss_dssp EEECCTTTCT----------THHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEECC
T ss_pred EEEEECcCCC----------CHHHHHHHHHHhhcCccccccccccccccceeEEEecCCceEEEEEEEEeEEeeCCEEEE
Confidence 9999999998 9999999999988766 666778999999999999999999999999999999999999
Q ss_pred ccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEe--ccc--ccccCCeee
Q 005713 324 CTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC--GID--DIQIGETIA 373 (681)
Q Consensus 324 ~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~--gl~--~~~~Gdtl~ 373 (681)
.|.+... +|++|. ....++++|.|||.|++. |++ ++..||+|+
T Consensus 235 ~p~~~~~---~V~~i~----~~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~ 281 (482)
T 1wb1_A 235 LPINMST---KVRSIQ----YFKESVMEAKAGDRVGMAIQGVDAKQIYRGXILT 281 (482)
T ss_dssp TTTCCCE---EECCBC----GGGSCBCCCCSSCCCCEECSSCCSSCCCSSCBCC
T ss_pred CCCCcEE---EEeEEE----ECCeEeeEecCCCEEEEEecCCCHhhccccceEe
Confidence 9887655 999995 345789999999999984 754 689999994
No 28
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=2.1e-34 Score=316.47 Aligned_cols=261 Identities=22% Similarity=0.292 Sum_probs=198.4
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEee---------------C
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY---------------N 150 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~---------------~ 150 (681)
....+||+++||+|||||||+++|++. ..|....|+++|+|+......+.+ .
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~-------------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~ 71 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGV-------------WTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCP 71 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSC-------------CCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCT
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCC-------------ccccCcccccCCcEEEeccccccccccccccccccccccc
Confidence 345789999999999999999999742 235567888999999765443332 1
Q ss_pred --------CeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCC-chhhHHHHHHHHHcCC-EEEEEEeecCCCCCC
Q 005713 151 --------DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEFGH-AVVVVVNKIDRPSAR 220 (681)
Q Consensus 151 --------~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~~gi-p~ivviNKiD~~~~~ 220 (681)
...++|||||||++|...+.+.+..+|++|||+|+++|. +.||++++..+...++ |+++|+||+|+.+.+
T Consensus 72 ~~g~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 72 NCLAETEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp TSCCBCEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTT
T ss_pred ccCcccccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHH
Confidence 168999999999999999999999999999999999997 8999999999888886 699999999997653
Q ss_pred -cccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeee-
Q 005713 221 -PDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEY- 298 (681)
Q Consensus 221 -~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~- 298 (681)
.....+++.+++.... ..++|++++||++|. |+..|++.|.+.++.|..+.+.||+++|.+++.
T Consensus 152 ~~~~~~~~i~~~l~~~~----~~~~~~i~vSA~~g~----------gi~~L~~~l~~~i~~~~~~~~~~~~~~v~~~f~v 217 (408)
T 1s0u_A 152 QAEENYEQIKEFVKGTI----AENAPIIPISAHHEA----------NIDVLLKAIQDFIPTPKRDPDATPRMYVARSFDI 217 (408)
T ss_dssp TTTTHHHHHHHHHTTST----TTTCCEEEC----------------CHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECC
T ss_pred HHHHHHHHHHHHHhhcC----CCCCeEEEeeCCCCC----------CHHHHHHHHHHhCCCCcccCCCCeEEEEEEEEee
Confidence 2234455555543321 235789999999999 999999999999999988889999999998764
Q ss_pred -------cCCCceEEEEEeecccccCCCEEEEccCCC-----c----eeeeEEEeEEEeeccceeecceecCCCEEEEec
Q 005713 299 -------DEHKGRIAIGRLHAGVLRKGMEVRVCTSED-----S----CRYARISELFVYEKFSRVSAEIVAAGDICAVCG 362 (681)
Q Consensus 299 -------d~~~G~v~~grV~sG~lk~gd~v~~~~~~~-----~----~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~g 362 (681)
+++.|.++.|+|.+|+|++||.|.+.|.+. . ....+|++|+. ++.++++|.|||+|++..
T Consensus 218 ~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~----~~~~~~~a~~G~~v~~~~ 293 (408)
T 1s0u_A 218 NKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAA----GNTILRKAHPGGLIGVGT 293 (408)
T ss_dssp CCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEE----TTEEESEECSSSCEEEEC
T ss_pred cCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEE----CCEEcCEEeCCCeEEEEe
Confidence 345789999999999999999999987531 0 01358999964 356899999999999942
Q ss_pred -----c--cccccCCeeeccCC
Q 005713 363 -----I--DDIQIGETIADKVS 377 (681)
Q Consensus 363 -----l--~~~~~Gdtl~~~~~ 377 (681)
+ +++.+||+|++++.
T Consensus 294 ~~~~~~~~~~~~~G~vl~~~~~ 315 (408)
T 1s0u_A 294 TLDPYLTKSDALTGSVVGLPGT 315 (408)
T ss_dssp SSCGGGTGGGTTTTCEEESTTC
T ss_pred ccCcccchhhccceeEEECCCC
Confidence 2 37888999997653
No 29
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=100.00 E-value=1.7e-34 Score=329.37 Aligned_cols=299 Identities=26% Similarity=0.278 Sum_probs=221.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEe------------------e
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT------------------Y 149 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~------------------~ 149 (681)
+.++|+|+||+|||||||+++|++........ +|+|.......+. +
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~----------------ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~ 67 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREA----------------GGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC--------------------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGG
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccC----------------CceecccCeEEEeechhhhhcccccccccccc
Confidence 46789999999999999999999764322111 1333332222222 2
Q ss_pred CCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCc--------
Q 005713 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARP-------- 221 (681)
Q Consensus 150 ~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~-------- 221 (681)
....++|||||||.+|..++.++++.+|++|||+|+++|+++||.++|..+...++|+++|+||+|+.....
T Consensus 68 ~~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~ 147 (594)
T 1g7s_A 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFM 147 (594)
T ss_dssp TCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHH
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchH
Confidence 233699999999999999999999999999999999999999999999999999999999999999964211
Q ss_pred -------ccchh-------hHHHHHHHhhcccc--------cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 222 -------DYVIN-------STFELFIELNATDE--------QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 222 -------~~~~~-------ei~~~~~~l~~~~~--------~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
+.+.+ ++.+.+.+.+...+ ...+|++++||++|. |+.+|+++|..++|
T Consensus 148 e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~----------GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 148 ETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGE----------GIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCC----------CchhHHHHHHhhcc
Confidence 11111 12222222222111 235699999999999 99999999998776
Q ss_pred CCc-----cccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEee--------ccce
Q 005713 280 GPR-----IEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYE--------KFSR 346 (681)
Q Consensus 280 ~p~-----~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~--------g~~~ 346 (681)
.+. .++++|+.++|++++.+++.|+++++||++|+|++||.|.+.+.++.. ..+|++|+.+. +.+.
T Consensus 218 ~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~~~~-~~rV~~i~~~~~~~elr~~~~~~ 296 (594)
T 1g7s_A 218 QYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSKDVI-STRIRSLLKPRPLEEMRESRKKF 296 (594)
T ss_dssp HHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSSSEE-EEECCEEEEECCCC----CCCSE
T ss_pred ccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCCCce-eEEEeEEEeccccchhhhccCCc
Confidence 432 356789999999999999999999999999999999999999887754 46999998873 5567
Q ss_pred eecceec--CCCEEEEecccccccCCeeeccCCCC--------CCCCCccCCCeeeEEEeecCCCCCcccCccccHHHHH
Q 005713 347 VSAEIVA--AGDICAVCGIDDIQIGETIADKVSGK--------PLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLR 416 (681)
Q Consensus 347 ~~v~~a~--aGdiv~i~gl~~~~~Gdtl~~~~~~~--------~l~~~~~~~P~~~~~~~~~~~~~~g~~~~~~~~~~l~ 416 (681)
.++++|. +|++|++.|++++.+||||+...+.. .+..+.++.+.+.+.+.+.. .| +.+.|.
T Consensus 297 ~~v~ea~~~aG~~v~~~~l~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkad~---~g------s~eal~ 367 (594)
T 1g7s_A 297 QKVDEVVAAAGIKIVAPGIDDVMAGSPLRVVTDPEKVREEILSEIEDIKIDTDEAGVVVKADT---LG------SLEAVV 367 (594)
T ss_dssp EECSEEESSEEEEEECSSCTTBCTTCEEEECSSHHHHHHHHHHHHHTTSCBCSSSCCEEEESS---HH------HHHHHH
T ss_pred eEccEEcCCCCcEEEEcccCCCCCCCEEEecCCHHHHHHHHHHHHHhcccccccccEEEEeCC---CC------CHHHHH
Confidence 8899988 99999999999999999999875431 01122333444555555433 12 246777
Q ss_pred HHHHHH
Q 005713 417 DRLYRE 422 (681)
Q Consensus 417 ~~L~~e 422 (681)
+.|.++
T Consensus 368 ~~l~~~ 373 (594)
T 1g7s_A 368 KILRDM 373 (594)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 777765
No 30
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=2e-33 Score=308.26 Aligned_cols=273 Identities=22% Similarity=0.226 Sum_probs=207.4
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC-----CeEEEEEeCC
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN-----DTKINIIDTP 160 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-----~~~i~iiDTP 160 (681)
.....+|+++||+|||||||+++|++...... .+............+..++++.......+.+. ...++|||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK-LGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS-SEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcccccc-cCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 34568999999999999999999987533211 11111222222333444555544332222222 2789999999
Q ss_pred CccchhHHHHHHHhhcceEEEEeeCCCCC-chhhHHHHHHHHHcCC-EEEEEEeecCCCCCC-cccchhhHHHHHHHhhc
Q 005713 161 GHSDFGGEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALEFGH-AVVVVVNKIDRPSAR-PDYVINSTFELFIELNA 237 (681)
Q Consensus 161 Gh~df~~e~~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~~gi-p~ivviNKiD~~~~~-~~~~~~ei~~~~~~l~~ 237 (681)
||++|...+..+++.+|++|||+|+.++. +.|+++++..+...+. |+++|+||+|+.+.+ ..+..+++.+.+...
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~-- 161 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT-- 161 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS--
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhh--
Confidence 99999999999999999999999999997 9999999999998886 899999999987543 222333444333222
Q ss_pred ccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEeee--------cCCCceEEEEE
Q 005713 238 TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEY--------DEHKGRIAIGR 309 (681)
Q Consensus 238 ~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~~--------d~~~G~v~~gr 309 (681)
....+|++++||++|. |+.+|++.|.+++|.|..+.+.||+++|.+++. +++.|++++|+
T Consensus 162 --~~~~~~ii~vSA~~g~----------gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v~~g~ 229 (403)
T 3sjy_A 162 --WAENVPIIPVSALHKI----------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGVIGGS 229 (403)
T ss_dssp --TTTTCCEEECBTTTTB----------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCEEEEE
T ss_pred --CCCCCEEEEEECCCCc----------ChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcEEEEE
Confidence 1235789999999999 999999999999999988889999999998765 45589999999
Q ss_pred eecccccCCCEEEEccCCCc-------e--eeeEEEeEEEeeccceeecceecCCCEEEEe-----cc--cccccCCeee
Q 005713 310 LHAGVLRKGMEVRVCTSEDS-------C--RYARISELFVYEKFSRVSAEIVAAGDICAVC-----GI--DDIQIGETIA 373 (681)
Q Consensus 310 V~sG~lk~gd~v~~~~~~~~-------~--~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~-----gl--~~~~~Gdtl~ 373 (681)
|.+|++++||.|.+.|.+.. . ...+|++|+. ++.++++|.|||+|++. ++ +++.+||+|+
T Consensus 230 v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~----~~~~~~~a~~G~~v~~~l~~~~~~~~~d~~~G~vl~ 305 (403)
T 3sjy_A 230 IIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRF----GDEEFKEAKPGGLVAIGTYLDPSLTKADNLLGSIIT 305 (403)
T ss_dssp EEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEE----TTEEESEECSSSCEEEEESSCHHHHGGGTTTTCEEE
T ss_pred EEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEE----CCEEcCEEeCCCEEEEEeccccccchhhhccccEEe
Confidence 99999999999999876531 0 1358999964 46789999999999994 33 4788999999
Q ss_pred ccCC
Q 005713 374 DKVS 377 (681)
Q Consensus 374 ~~~~ 377 (681)
+++.
T Consensus 306 ~~~~ 309 (403)
T 3sjy_A 306 LADA 309 (403)
T ss_dssp ETTC
T ss_pred CCCC
Confidence 8764
No 31
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=100.00 E-value=2.8e-34 Score=322.66 Aligned_cols=255 Identities=25% Similarity=0.350 Sum_probs=210.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEee-CCeEEEEEeCCCccchh
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY-NDTKINIIDTPGHSDFG 166 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~i~iiDTPGh~df~ 166 (681)
+.++|+++||+|||||||+++|.+...... ...|+|.......+.+ ++..++|||||||.+|.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~----------------~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~ 66 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAM----------------EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFS 66 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHS----------------SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc----------------cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHH
Confidence 457799999999999999999987643221 2347777777777776 56789999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceE
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQA 246 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pv 246 (681)
..+.++++.+|++|||+|+.+|.++||.++|..+...++|+|+|+||+|+.+++.+.+..++... .+.......++|+
T Consensus 67 ~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~--~~~~e~~~~~~~i 144 (537)
T 3izy_P 67 AMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAY--DVVCEDYGGDVQA 144 (537)
T ss_dssp TSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHT--TSCCCCSSSSEEE
T ss_pred HHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhh--hhhHHhcCCCceE
Confidence 99999999999999999999999999999999999999999999999999887766665555432 1112222335799
Q ss_pred EEeecccCCCCCCCCCCCCCcchhHHHHHhhCC--CCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEc
Q 005713 247 IYASGIQGKAGLSPDNLADDLGPLFESIMRCIP--GPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVC 324 (681)
Q Consensus 247 i~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp--~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~ 324 (681)
+++||++|. |+.+|++.|...++ .+..+++.|+.+.|++++++++.|++++|+|.+|+|++||.|...
T Consensus 145 v~vSAktG~----------GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v~~g 214 (537)
T 3izy_P 145 VHVSALTGE----------NMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSILVAG 214 (537)
T ss_dssp CCCCSSSSC----------SSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEECCS
T ss_pred EEEECCCCC----------CchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEEEeC
Confidence 999999999 99999999988754 444567899999999999999999999999999999999987432
Q ss_pred cCCCceeeeEEEeEEEeeccceeecceecCCCEEEEeccccc-ccCCeeeccCCC
Q 005713 325 TSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDI-QIGETIADKVSG 378 (681)
Q Consensus 325 ~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~-~~Gdtl~~~~~~ 378 (681)
.. ..+|++|+.+.| .++++|.|||+|+|.|++++ ..||+|+..++.
T Consensus 215 ---~~--~~kVr~i~~~~g---~~v~~A~~G~~V~i~g~~~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 215 ---KS--WAKVRLMFDENG---RAVNEAYPSMPVGIIGWRDLPSAGDEILEVESE 261 (537)
T ss_dssp ---SC--CEEEEEEEECCC---CCSCCSCCSTTCCCCSSEEEEEEESSCCSCCSS
T ss_pred ---Cc--eEEEEEEEcCCC---CCCcEEcCCCEEEEECCCCCCCCCCEEEecCCh
Confidence 21 248999976654 67999999999999999985 889999987543
No 32
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=100.00 E-value=1.9e-33 Score=313.52 Aligned_cols=254 Identities=24% Similarity=0.281 Sum_probs=207.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
+.++|+++||+|||||||+++|+...... ...+|+|++.....+.+++..++|||||||.+|..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~----------------~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~ 66 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVAS----------------GEAGGITQHIGAYHVETENGMITFLDTPGHAAFTS 66 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSB----------------TTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCcc----------------ccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHH
Confidence 56889999999999999999998753221 11358898888888888999999999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceEE
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAI 247 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi 247 (681)
.+.++++.+|++|||+|+.+|.++||.++|..+...++|+|+|+||+|+.+++++++..++.+. .+.......++|++
T Consensus 67 ~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~--~~~~~~~~~~~~~v 144 (501)
T 1zo1_I 67 MRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQY--GILPEEWGGESQFV 144 (501)
T ss_dssp SBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCC--CCCTTCCSSSCEEE
T ss_pred HHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHh--hhhHHHhCCCccEE
Confidence 9999999999999999999999999999999999999999999999999877655544433210 00011111247999
Q ss_pred EeecccCCCCCCCCCCCCCcchhHHHHHhhC--CCCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEcc
Q 005713 248 YASGIQGKAGLSPDNLADDLGPLFESIMRCI--PGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCT 325 (681)
Q Consensus 248 ~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l--p~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~ 325 (681)
++||++|. |+.+||+.|.... +.+..+++.|+.+.|++++.+++.|++++++|++|++++||.|.+.+
T Consensus 145 ~vSAktG~----------gI~eLle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~v~~g~ 214 (501)
T 1zo1_I 145 HVSAKAGT----------GIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGF 214 (501)
T ss_dssp ECCTTTCT----------TCTTHHHHTTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCEEEEEB
T ss_pred EEeeeecc----------CcchhhhhhhhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCCEEEEcc
Confidence 99999999 8999999998653 33445667899999999999999999999999999999999998854
Q ss_pred CCCceeeeEEEeEEEeeccceeecceecCCCEEEEeccccc-ccCCeeeccCC
Q 005713 326 SEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDI-QIGETIADKVS 377 (681)
Q Consensus 326 ~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~gl~~~-~~Gdtl~~~~~ 377 (681)
.. .+|++|+.. +..++++|.||+.|.+.|++++ ..||+++...+
T Consensus 215 ~~-----~kVr~i~~~---~g~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~~~~ 259 (501)
T 1zo1_I 215 EY-----GRVRAMRNE---LGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRD 259 (501)
T ss_dssp SS-----CEEEEECCT---TTTSEEEECCSSCSSSEEECSCCCTTEEEEEECS
T ss_pred ce-----eEEEEEEec---CCCcCcEeccCCcEEEeCCCCCCCCCCEEEecCC
Confidence 32 388888543 3457899999999999999874 78999986543
No 33
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.84 E-value=3.8e-23 Score=226.63 Aligned_cols=249 Identities=21% Similarity=0.287 Sum_probs=163.5
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCe-EEEEEeCCCccc
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDT-KINIIDTPGHSD 164 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~-~i~iiDTPGh~d 164 (681)
....++|+|+|+.|+|||||+++|+...... .+...|+|+......+.+.+. .++|||||||.+
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~---------------~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d 95 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSI---------------VSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDD 95 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC----------------------------CCCCEEEEEETTTEEEEEEECSSTTC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCc---------------cCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCc
Confidence 3457899999999999999999998754321 123447888888888888776 999999999998
Q ss_pred hhHH-------HHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhc
Q 005713 165 FGGE-------VERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNA 237 (681)
Q Consensus 165 f~~e-------~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~ 237 (681)
|... +..+++.+|++|+|+|+ +...++..++..+.+.++|+++|+||+|+..++.. +. ..++
T Consensus 96 ~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~----~~---~~~l-- 164 (423)
T 3qq5_A 96 VGELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE----EL---KGLY-- 164 (423)
T ss_dssp CCTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT----HH---HHHS--
T ss_pred ccchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH----HH---HHHH--
Confidence 8533 56688889999999999 78899999999999999999999999999876533 11 1122
Q ss_pred ccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccc-------cCCceEEEEEEeeecCCCceE-----
Q 005713 238 TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIE-------KDGALQMLATNLEYDEHKGRI----- 305 (681)
Q Consensus 238 ~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~-------~~~p~~~~V~~~~~d~~~G~v----- 305 (681)
.+...++++++||++|. |+.++++.|.+.++.+... ..+.+.+++..+......|++
T Consensus 165 -~~~~g~~v~~vSAktg~----------gI~eL~~~L~~~l~~~~e~~l~~dLv~~gd~v~lv~pid~~~pkgr~ilp~~ 233 (423)
T 3qq5_A 165 -ESRYEAKVLLVSALQKK----------GFDDIGKTISEILPGDEEIPYLGDLIDGGDLVILVVPIDLGAPKGRLIMPQV 233 (423)
T ss_dssp -SCCTTCCCCCCSSCCTT----------STTTHHHHHHHHSCCCCCCCSCSCCCCTTCCEEEECCCSCCSSTTCCCHHHH
T ss_pred -HHHcCCCEEEEECCCCC----------CHHHHHHHHHHhhhhhccCcchhhccccCceEEEEeeccccCcCCccccchH
Confidence 22345689999999998 9999999999999655211 134566666665554444442
Q ss_pred ---------------EEEEeecccccCC---CEEEEccCCCceeeeEEEeEEEeeccceeecceec---C---CCEEEE-
Q 005713 306 ---------------AIGRLHAGVLRKG---MEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVA---A---GDICAV- 360 (681)
Q Consensus 306 ---------------~~grV~sG~lk~g---d~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~---a---Gdiv~i- 360 (681)
+..+...+.++.. ..+.+..+.. ..+|..+ .....+..+.. | ||+..+
T Consensus 234 ~~ird~l~~~~~~~~~~~~~l~~~l~~l~~~~~lv~tdsq~---~~~v~~~----~p~~~~~t~~s~l~a~~kG~~~~~~ 306 (423)
T 3qq5_A 234 HAIREALDREAIALVVKERELRYVMENIGMKPKLVITDSQV---AMKVASD----VPEDVELTTFSIVESRYRGDLAYFV 306 (423)
T ss_dssp HHHHHHHHTTCEEEECCSTTHHHHHHHCSSCCSCCCBCTTH---HHHHHHT----CCCSSSCCCBHHHHHHHSSCSHHHH
T ss_pred HHHHHHHHhhhHHHHhhHHHHHHHHHhcCCCccEEEeccHH---HHHHhcc----CCCCCCcccHHHHhhccCCCHHHHH
Confidence 2222223333322 2222222211 0123222 23333333433 3 998887
Q ss_pred ec---ccccccCCeeeccCCC
Q 005713 361 CG---IDDIQIGETIADKVSG 378 (681)
Q Consensus 361 ~g---l~~~~~Gdtl~~~~~~ 378 (681)
+| +++++.||||.-.+.+
T Consensus 307 ~g~~~~~~~~~gd~v~~~e~c 327 (423)
T 3qq5_A 307 ESVRKIEELEDGDTVVIMEGC 327 (423)
T ss_dssp HHHHTTTTCCTTCEEEEECCS
T ss_pred HHHHHHHhCCCCCEEEEeccC
Confidence 44 6678899999876654
No 34
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.82 E-value=1.3e-20 Score=180.74 Aligned_cols=162 Identities=33% Similarity=0.449 Sum_probs=124.3
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
.+.++|+++|+.|+|||||+++|+......... .+++.......+.+++..++||||||+.+|.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 69 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEA----------------GGITQHIGAYQVTVNDKKITFLDTPGHEAFT 69 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSC----------------CSSSTTCCCCEEEETTEEEEESCCCSSSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCC----------------CceeEeeeEEEEEeCCceEEEEECCCCHHHH
Confidence 457899999999999999999998765432211 1333334445667788999999999999998
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC--Cc
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC--DF 244 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~--~~ 244 (681)
..+..++..+|++|+|+|+.++...++.+.+..+...++|+++|+||+|+...+.+ ++...+.......... .+
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~~~~ 145 (178)
T 2lkc_A 70 TMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPD----RVMQELMEYNLVPEEWGGDT 145 (178)
T ss_dssp CSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHH----HHHHHHTTTTCCBTTTTSSE
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHH----HHHHHHHhcCcChhHcCCcc
Confidence 88878888999999999999998899999888888889999999999999765322 2233232222211222 26
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
+++++||++|. |+.++++.|.+.+
T Consensus 146 ~~~~~Sa~~~~----------gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 146 IFCKLSAKTKE----------GLDHLLEMILLVS 169 (178)
T ss_dssp EEEECCSSSSH----------HHHHHHHHHHHHH
T ss_pred cEEEEecCCCC----------CHHHHHHHHHHhh
Confidence 89999999999 8999999988755
No 35
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.82 E-value=4.7e-20 Score=184.17 Aligned_cols=175 Identities=14% Similarity=0.171 Sum_probs=123.1
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEe-eCCeEEEEEeCCCcc-
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT-YNDTKINIIDTPGHS- 163 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~-~~~~~i~iiDTPGh~- 163 (681)
....++|+++|+.|+|||||+++|++........ ...|+|.......+. +++..++||||||+.
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~--------------~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 91 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFAS--------------KTPGRTQHINYFSVGPAAEPVAHLVDLPGYGY 91 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTT--------------CCCCSCCCEEEEEESCTTSCSEEEEECCCCCS
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeec--------------CCCCcccceEEEEecCCCCCcEEEEcCCCCCc
Confidence 3457899999999999999999998865211110 111445554455555 567899999999963
Q ss_pred ---------chhHHHHHHHhh---cceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCC-cccchhhHHH
Q 005713 164 ---------DFGGEVERILNM---VEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSAR-PDYVINSTFE 230 (681)
Q Consensus 164 ---------df~~e~~~~l~~---aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~-~~~~~~ei~~ 230 (681)
.|...+..+++. +|++|+|+|+.++.......++..+...++|+++|+||+|+...+ .....+++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~ 171 (223)
T 4dhe_A 92 AEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQK 171 (223)
T ss_dssp SCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred ccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHH
Confidence 345555566666 788999999999888888888898888899999999999987532 1223333434
Q ss_pred HHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccc
Q 005713 231 LFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIE 284 (681)
Q Consensus 231 ~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~ 284 (681)
.+...........++++++||++|. |+.+|++.|.+.++.+...
T Consensus 172 ~l~~~~~~~~~~~~~~~~~SA~~g~----------gv~~l~~~l~~~~~~~~~~ 215 (223)
T 4dhe_A 172 SLDAYRDAGYAGKLTVQLFSALKRT----------GLDDAHALIESWLRPAAAD 215 (223)
T ss_dssp HHHHHHHHTCCSCEEEEEEBTTTTB----------SHHHHHHHHHHHHC-----
T ss_pred HHHhhhhcccCCCCeEEEeecCCCc----------CHHHHHHHHHHhcCccCCc
Confidence 3333211011235689999999999 9999999999999876543
No 36
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.82 E-value=1.5e-19 Score=173.80 Aligned_cols=162 Identities=17% Similarity=0.206 Sum_probs=117.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
...+|+++|+.++|||||+++|+..........+. |.+.......+......+.||||||+.+|..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 76 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTI--------------GAAFFSQTLAVNDATVKFEIWDTAGQERYHS 76 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCS--------------CCSEEEEEEEETTEEEEEEEEECCCSGGGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCc--------------eeEEEEEEEEECCEEEEEEEEeCCCChhhhh
Confidence 45789999999999999999999765432221111 3344333333433456899999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHHc---CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 168 EVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~~---gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
.+..+++.+|++|+|+|+++... .....++..+... ++|+++|+||+|+...+ ....+++.++.... .
T Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~~~~~~~~~~~~~-------~ 148 (181)
T 2efe_B 77 LAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR-KVTAEDAQTYAQEN-------G 148 (181)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC-CSCHHHHHHHHHHT-------T
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccc-cCCHHHHHHHHHHc-------C
Confidence 99999999999999999987543 3334555555554 78999999999996543 12233444443332 4
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
++++++||++|. |+.++++.|.+.++..
T Consensus 149 ~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 149 LFFMETSAKTAT----------NVKEIFYEIARRLPRV 176 (181)
T ss_dssp CEEEECCSSSCT----------THHHHHHHHHHTCC--
T ss_pred CEEEEEECCCCC----------CHHHHHHHHHHHHHhc
Confidence 579999999999 9999999999988654
No 37
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.81 E-value=1.5e-19 Score=170.16 Aligned_cols=153 Identities=24% Similarity=0.318 Sum_probs=114.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc----
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD---- 164 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d---- 164 (681)
+++|+++|+.|+|||||+++|++....... ...++|.......+.+.+..+.||||||+.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 65 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRSAVVA---------------DVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKW 65 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC--------------------------CCEEEEEEETTEEEEEEECGGGCSSSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCeeecc---------------CCCCceecceEEEEEeCCceEEEEECCCCCCccch
Confidence 368999999999999999999976532111 1125555666667778889999999999987
Q ss_pred ---hhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 165 ---FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 165 ---f~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
+...+..+++.+|++|+|+|+.++.......++..+...++|+++|+||+|+.+.+ +++.++. +
T Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-----~~~~~~~-~------- 132 (161)
T 2dyk_A 66 EKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE-----LYLGPLY-G------- 132 (161)
T ss_dssp CHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG-----GGCGGGG-G-------
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccch-----HhHHHHH-h-------
Confidence 45566778899999999999999877777777777777899999999999986531 1111111 1
Q ss_pred CCc-eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 242 CDF-QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 242 ~~~-pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
..+ +++++||++|. |+.++++.+.+.+|
T Consensus 133 ~~~~~~~~~Sa~~~~----------gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 133 LGFGDPIPTSSEHAR----------GLEELLEAIWERLP 161 (161)
T ss_dssp GSSCSCEECBTTTTB----------SHHHHHHHHHHHCC
T ss_pred CCCCCeEEEecccCC----------ChHHHHHHHHHhCc
Confidence 123 68999999999 99999999998875
No 38
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.80 E-value=1.9e-19 Score=189.46 Aligned_cols=158 Identities=22% Similarity=0.286 Sum_probs=120.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc---
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD--- 164 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d--- 164 (681)
+..+|+|+|++|+|||||+++|++.......... ++|.......+.+++.+++||||||+.+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~---------------~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~ 70 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRP---------------QTTRKRLRGILTEGRRQIVFVDTPGLHKPMD 70 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSS---------------CCCCSCEEEEEEETTEEEEEEECCCCCCCCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCC---------------CceeEEEEEEEEeCCcEEEEecCccccchhh
Confidence 4578999999999999999999987654321111 2222222233567889999999999987
Q ss_pred -----hhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHc--CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhc
Q 005713 165 -----FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNA 237 (681)
Q Consensus 165 -----f~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~--gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~ 237 (681)
|...+..+++.+|++|+|+|++++....+..++..+... ++|+++|+||+|+...+.. +.+....+ .
T Consensus 71 ~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-----~~~~~~~~-~ 144 (301)
T 1wf3_A 71 ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE-----AMKAYHEL-L 144 (301)
T ss_dssp HHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH-----HHHHHHHT-S
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHH-----HHHHHHHh-c
Confidence 677788899999999999999998888887777888877 8999999999998754311 22223332 1
Q ss_pred ccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 238 TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 238 ~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
...+++++||++|. |+..|++.|.+.+|.
T Consensus 145 ----~~~~~~~iSA~~g~----------gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 145 ----PEAEPRMLSALDER----------QVAELKADLLALMPE 173 (301)
T ss_dssp ----TTSEEEECCTTCHH----------HHHHHHHHHHTTCCB
T ss_pred ----CcCcEEEEeCCCCC----------CHHHHHHHHHHhccc
Confidence 12368999999999 999999999988753
No 39
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=2.6e-19 Score=174.92 Aligned_cols=163 Identities=17% Similarity=0.167 Sum_probs=120.2
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
++..+|+++|+.++|||||+++|+..........+ .|.+.......+......+.||||||+.+|.
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 86 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPT--------------IGASFMTKTVPCGNELHKFLIWDTAGQERFH 86 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCC--------------SSEEEEEEEEECSSSEEEEEEEEECCSGGGG
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCC--------------cceeEEEEEEEeCCEEEEEEEEcCCCchhhH
Confidence 35689999999999999999999986543222222 2566655555555667899999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchh-hHHHHHHHHHc---CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQ-TRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~q-t~~~l~~~~~~---gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
..+..+++.+|++|+|+|+++....+ ...++..+... ++|+++|+||+|+...+ ....+++.++... .
T Consensus 87 ~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~-~v~~~~~~~~~~~-------~ 158 (192)
T 2fg5_A 87 SLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIR-EVPLKDAKEYAES-------I 158 (192)
T ss_dssp GGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC-CSCHHHHHHHHHT-------T
T ss_pred hhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc-ccCHHHHHHHHHH-------c
Confidence 99999999999999999998754322 23444555443 78999999999986422 1123344444332 2
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
.++++++||++|. |+.++++.|.+.++..
T Consensus 159 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 159 GAIVVETSAKNAI----------NIEELFQGISRQIPPL 187 (192)
T ss_dssp TCEEEECBTTTTB----------SHHHHHHHHHHTCC--
T ss_pred CCEEEEEeCCCCc----------CHHHHHHHHHHHHHhh
Confidence 4689999999999 9999999999988644
No 40
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.80 E-value=3.4e-19 Score=170.56 Aligned_cols=161 Identities=20% Similarity=0.227 Sum_probs=116.9
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
.+...+|+++|+.++|||||+++|+..........+. |.++......+......+.||||||+.+|
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 77 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTI--------------GVEFGTRIIEVSGQKIKLQIWDTAGQERF 77 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSC--------------CCCEEEEEEEETTEEEEEEEEECTTGGGT
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcc--------------ceEEEEEEEEECCeEEEEEEEECCCChHh
Confidence 3457899999999999999999999876543222221 44444444444444578999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCchhh-HHHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPMPQT-RFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~~qt-~~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
...+..+++.+|++|+|+|+++....+. ..++..+.. .++|+++|+||+|+...+ ....+++.++....
T Consensus 78 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~------ 150 (179)
T 1z0f_A 78 RAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQR-DVTYEEAKQFAEEN------ 150 (179)
T ss_dssp CHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC-CSCHHHHHHHHHHT------
T ss_pred hhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc-ccCHHHHHHHHHHc------
Confidence 9999999999999999999987533322 233333433 478999999999986432 11233444444332
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.++++++||++|. |+.++++.+.+.+
T Consensus 151 -~~~~~~~Sa~~~~----------gi~~l~~~l~~~i 176 (179)
T 1z0f_A 151 -GLLFLEASAKTGE----------NVEDAFLEAAKKI 176 (179)
T ss_dssp -TCEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred -CCEEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 3589999999999 9999999998765
No 41
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.80 E-value=3.9e-19 Score=168.43 Aligned_cols=160 Identities=14% Similarity=0.169 Sum_probs=116.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
...+|+++|+.++|||||+++|+.......... ..|.+.......+...+..++||||||+.+|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~ 70 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQES--------------TIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHS 70 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCC--------------CSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--------------ccceEEEEEEEEECCEEEEEEEEeCCCcHHhhh
Confidence 357899999999999999999997654322211 125555555555555567899999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHHc---CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 168 EVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~~---gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
.+..+++.+|++|+|+|+++... .....++..+... ++|+++|+||+|+...+. ...++...+... ..
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~-~~~~~~~~~~~~-------~~ 142 (170)
T 1r2q_A 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRA-VDFQEAQSYADD-------NS 142 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC-SCHHHHHHHHHH-------TT
T ss_pred hhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccc-cCHHHHHHHHHH-------cC
Confidence 99999999999999999987532 2333444555443 689999999999864321 112333333322 24
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
++++++||++|. |+.++++.|.+.++
T Consensus 143 ~~~~~~Sa~~g~----------gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 143 LLFMETSAKTSM----------NVNEIFMAIAKKLP 168 (170)
T ss_dssp CEEEECCTTTCT----------THHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCC----------CHHHHHHHHHHHHh
Confidence 589999999999 99999999998875
No 42
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.79 E-value=5.7e-19 Score=167.50 Aligned_cols=160 Identities=17% Similarity=0.169 Sum_probs=116.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
+..+|+++|+.|+|||||+++|++.........+ .|.+.......+......+.||||||+.+|..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~ 70 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPT--------------IGASFMTKTVQYQNELHKFLIWDTAGLERFRA 70 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCC--------------CSEEEEEEEEEETTEEEEEEEEEECCSGGGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCc--------------eeEEEEEEEEEECCeEEEEEEEcCCCchhhhc
Confidence 4578999999999999999999987543222221 25555555555554557899999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCCchhh-HHHHHHHHHc---CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMPQT-RFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~qt-~~~l~~~~~~---gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
....+++.+|++|+|+|+++....+. ..++..+... ++|+++|+||+|+...+ +...++...+... ..
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~-~v~~~~~~~~~~~-------~~ 142 (170)
T 1z0j_A 71 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVR-EVMERDAKDYADS-------IH 142 (170)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGC-CSCHHHHHHHHHH-------TT
T ss_pred ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccccc-ccCHHHHHHHHHH-------cC
Confidence 99999999999999999987543333 3444555443 57899999999986432 1112233333222 24
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
++++++||++|. |+..+++.|.+.++
T Consensus 143 ~~~~~~Sa~~~~----------~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 143 AIFVETSAKNAI----------NINELFIEISRRIP 168 (170)
T ss_dssp CEEEECBTTTTB----------SHHHHHHHHHHHCC
T ss_pred CEEEEEeCCCCc----------CHHHHHHHHHHHHh
Confidence 689999999999 99999999998875
No 43
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.79 E-value=8.2e-19 Score=166.21 Aligned_cols=160 Identities=21% Similarity=0.247 Sum_probs=114.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
..+|+++|+.|+|||||+++|+..........+. |.+.......+......+.||||||+.+|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~ 68 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTI--------------GAAFLTQRVTINEHTVKFEIWDTAGQERFASL 68 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCS--------------SEEEEEEEEEETTEEEEEEEEEECCSGGGGGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc--------------ceeEEEEEEEECCEEEEEEEEECCCChhhhhh
Confidence 3689999999999999999999865432222221 44444444444444568999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCCch-hhHHHHHHHHH---cCCEEEEEEeecCCCCCCc-ccch-hhHHHHHHHhhcccccC
Q 005713 169 VERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALE---FGHAVVVVVNKIDRPSARP-DYVI-NSTFELFIELNATDEQC 242 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~~---~gip~ivviNKiD~~~~~~-~~~~-~ei~~~~~~l~~~~~~~ 242 (681)
+..+++.+|++|+|+|+++.... ....++..+.. .++|+++|+||+|+..... ..+. ++...+....
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~------- 141 (170)
T 1ek0_A 69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEK------- 141 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHH-------
T ss_pred hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHc-------
Confidence 99999999999999999875332 22334444443 3789999999999865421 1222 2223322222
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.++++++||++|. |+.++++.|.+.++
T Consensus 142 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 142 GLLFFETSAKTGE----------NVNDVFLGIGEKIP 168 (170)
T ss_dssp TCEEEECCTTTCT----------THHHHHHHHHTTSC
T ss_pred CCEEEEEeCCCCC----------CHHHHHHHHHHHHh
Confidence 3579999999999 99999999998774
No 44
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.79 E-value=8.3e-19 Score=172.45 Aligned_cols=160 Identities=20% Similarity=0.141 Sum_probs=115.9
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
+...+|+++|+.|+|||||+++|+..........+ .|++.......+......+.||||||+.+|.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t--------------~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 71 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVST--------------VGIDFKVKTIYRNDKRIKLQIWDTAGLERYR 71 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCC--------------CSEEEEEEEEEETTEEEEEEEEEECCSGGGH
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCc--------------cceeEEEEEEEECCeEEEEEEEECCCchhhc
Confidence 34689999999999999999999986543222222 1555555444444456789999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCch-hhHHHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
..+..+++.+|++|+|+|+++.... ....++..+.. .+.|+++|+||+|+...+. ...+++..+...+
T Consensus 72 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~------- 143 (203)
T 1zbd_A 72 TITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERV-VSSERGRQLADHL------- 143 (203)
T ss_dssp HHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCC-SCHHHHHHHHHHH-------
T ss_pred chHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccc-cCHHHHHHHHHHC-------
Confidence 9999999999999999999875332 23344445544 3789999999999975431 1223333433332
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.++++++||++|. |+..+++.|.+.+
T Consensus 144 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~i 169 (203)
T 1zbd_A 144 GFEFFEASAKDNI----------NVKQTFERLVDVI 169 (203)
T ss_dssp TCEEEECBTTTTB----------SSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 3579999999999 8888888887765
No 45
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.79 E-value=8.8e-19 Score=185.00 Aligned_cols=164 Identities=21% Similarity=0.314 Sum_probs=124.0
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC-CeEEEEEeCCCccc
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN-DTKINIIDTPGHSD 164 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-~~~i~iiDTPGh~d 164 (681)
+...-.|+|+|++|+|||||+++|++........ ..++|.......+.++ +..++||||||+.+
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~---------------~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~ 71 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISP---------------KAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 71 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCS---------------SSCCCCSCEEEEEEETTTEEEEEEECCCCCC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccccCC---------------CCCceeeEEEEEEecCCCCeEEEEECcCCCc
Confidence 3346689999999999999999999876543221 1245555555566777 89999999999966
Q ss_pred hh----------HHHHHHHhhcceEEEEeeCCCCCchhhHHH-HHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHH
Q 005713 165 FG----------GEVERILNMVEGVLLVVDSVEGPMPQTRFV-LKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFI 233 (681)
Q Consensus 165 f~----------~e~~~~l~~aD~~llVvDa~~g~~~qt~~~-l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~ 233 (681)
+. ..+..+++.+|++|+|+|++++...++... +..+...++|+++|+||+|+.... ......+..+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~-~~~~~~~~~l~~ 150 (308)
T 3iev_A 72 PKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPA-KNVLPLIDEIHK 150 (308)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSG-GGGHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCH-HHHHHHHHHHHH
Confidence 54 677788999999999999999988888887 777777899999999999986321 122222222222
Q ss_pred HhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 234 ELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 234 ~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
.++ ...+++++||++|. |+..|++.+.++++.
T Consensus 151 ~~~-----~~~~i~~vSA~~g~----------gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 151 KHP-----ELTEIVPISALKGA----------NLDELVKTILKYLPE 182 (308)
T ss_dssp HCT-----TCCCEEECBTTTTB----------SHHHHHHHHHHHSCB
T ss_pred hcc-----CCCeEEEEeCCCCC----------CHHHHHHHHHHhCcc
Confidence 221 12479999999999 999999999999864
No 46
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.79 E-value=4.6e-19 Score=172.87 Aligned_cols=162 Identities=19% Similarity=0.219 Sum_probs=117.3
Q ss_pred cCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc
Q 005713 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (681)
Q Consensus 85 ~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d 164 (681)
..+...+|+|+|+.|+|||||+++|+..........+. |.+.......+...+..+.||||||+.+
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (193)
T 2oil_A 21 DYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTI--------------GVEFSTRTVMLGTAAVKAQIWDTAGLER 86 (193)
T ss_dssp CCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCS--------------SEEEEEEEEEETTEEEEEEEEEESCCCT
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc--------------ceeEEEEEEEECCEEEEEEEEeCCCchh
Confidence 34457899999999999999999999875543222221 4555555555555567899999999999
Q ss_pred hhHHHHHHHhhcceEEEEeeCCCCCch-hhHHHHHHHHHc---CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 165 FGGEVERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 165 f~~e~~~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~~~---gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
|...+..+++.+|++|+|+|+++.... ....++..+... ++|+++|+||+|+...+. ...++...+...
T Consensus 87 ~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~------ 159 (193)
T 2oil_A 87 YRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQARE-VPTEEARMFAEN------ 159 (193)
T ss_dssp TCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCC-SCHHHHHHHHHH------
T ss_pred hhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccc-cCHHHHHHHHHH------
Confidence 999999999999999999999874332 223444444433 689999999999865321 122333333322
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
..++++++||++|. |+..+++.|.+.+
T Consensus 160 -~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i 186 (193)
T 2oil_A 160 -NGLLFLETSALDST----------NVELAFETVLKEI 186 (193)
T ss_dssp -TTCEEEEECTTTCT----------THHHHHHHHHHHH
T ss_pred -cCCEEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 24579999999999 9999999988765
No 47
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.79 E-value=7.8e-19 Score=171.14 Aligned_cols=160 Identities=16% Similarity=0.158 Sum_probs=114.8
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCcc
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHS 163 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~ 163 (681)
.+...+|+++|+.++|||||+++|+.......... +++.......+.+++ +.+.||||||+.
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 76 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYIS----------------TIGVDFKIRTIELDGKTIKLQIWDTAGQE 76 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCC----------------CSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCC----------------cccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 34578999999999999999999997654322221 233333344445554 689999999999
Q ss_pred chhHHHHHHHhhcceEEEEeeCCCCCch-hhHHHHHHHHHc---CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccc
Q 005713 164 DFGGEVERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (681)
Q Consensus 164 df~~e~~~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~~~---gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~ 239 (681)
+|...+..+++.+|++|+|+|+++.... ....++..+... ++|+++|+||+|+...+. ....+...+...+
T Consensus 77 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~---- 151 (196)
T 3tkl_A 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKV-VDYTTAKEFADSL---- 151 (196)
T ss_dssp GGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCC-SCHHHHHHHHHHT----
T ss_pred hhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccc-cCHHHHHHHHHHc----
Confidence 9999999999999999999999874332 223344444443 789999999999875432 1122333333322
Q ss_pred ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 240 ~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.++++++||++|. |+.++|+.|.+.+.
T Consensus 152 ---~~~~~~~Sa~~g~----------gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 152 ---GIPFLETSAKNAT----------NVEQSFMTMAAEIK 178 (196)
T ss_dssp ---TCCEEEECTTTCT----------THHHHHHHHHHHHH
T ss_pred ---CCcEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 3579999999999 89999998887664
No 48
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.79 E-value=4.6e-19 Score=173.23 Aligned_cols=163 Identities=17% Similarity=0.246 Sum_probs=116.2
Q ss_pred cCCCccEEEEEeCCCCcHHHHHHHHHhhcCcc-ccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCcc
Q 005713 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVF-RDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS 163 (681)
Q Consensus 85 ~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~-~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~ 163 (681)
+....++|+|+|+.++|||||+++|+...... ....+. |.+ ...+.+.+..++||||||+.
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~--------------~~~----~~~~~~~~~~~~i~Dt~G~~ 74 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATV--------------GYN----VETFEKGRVAFTVFDMGGAK 74 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCS--------------SEE----EEEEEETTEEEEEEEECCSG
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccccccc--------------cee----EEEEEeCCEEEEEEECCCCH
Confidence 34467899999999999999999998765543 211111 322 23456888999999999999
Q ss_pred chhHHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHHc-----------CCEEEEEEeecCCCCCCcccchhhHHHH
Q 005713 164 DFGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF-----------GHAVVVVVNKIDRPSARPDYVINSTFEL 231 (681)
Q Consensus 164 df~~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~~-----------gip~ivviNKiD~~~~~~~~~~~ei~~~ 231 (681)
+|...+..+++.+|++|+|+|+++... .....++..+... ++|+++|+||+|+..... .+++.+.
T Consensus 75 ~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~ 151 (199)
T 4bas_A 75 KFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT---AAELVEI 151 (199)
T ss_dssp GGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC---HHHHHHH
T ss_pred hHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC---HHHHHHH
Confidence 999999999999999999999998643 3344555555544 899999999999976531 2233222
Q ss_pred HHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 232 FIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 232 ~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
+. +........++++++||++|. |+.++++.|.+.+.
T Consensus 152 ~~-~~~~~~~~~~~~~~~Sa~~g~----------gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 152 LD-LTTLMGDHPFVIFASNGLKGT----------GVHEGFSWLQETAS 188 (199)
T ss_dssp HT-HHHHHTTSCEEEEECBTTTTB----------THHHHHHHHHHHHH
T ss_pred hc-chhhccCCeeEEEEeeCCCcc----------CHHHHHHHHHHHHH
Confidence 21 111002245789999999999 99999999988764
No 49
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.79 E-value=1.3e-18 Score=169.69 Aligned_cols=174 Identities=17% Similarity=0.190 Sum_probs=110.5
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceee----eeeccchhh--cccceeEEeeeeEEee----------
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKE----RIMDSNDLE--RERGITILSKNTSITY---------- 149 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~----~~~D~~~~E--~erGiTi~~~~~~~~~---------- 149 (681)
.....+|+++|+.++|||||+++|++.........+... ...+..... .....+.......+..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 345789999999999999999999987544222222110 000000000 0000000000000000
Q ss_pred -------CCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhh-HHHHHHHHH-cCCEEEEEEeecCCCCCC
Q 005713 150 -------NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQT-RFVLKKALE-FGHAVVVVVNKIDRPSAR 220 (681)
Q Consensus 150 -------~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt-~~~l~~~~~-~gip~ivviNKiD~~~~~ 220 (681)
....+.||||||+.+|...+..+++.+|++|+|+|++++...+. ..++..+.. .+.|+++|+||+|. ..
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~-~~- 161 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDK-NK- 161 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTC-C--
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCc-cc-
Confidence 01789999999999999999999999999999999988643333 334444444 46999999999993 22
Q ss_pred cccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 221 PDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 221 ~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.....+++.+++.+. .++++++||++|. |+..+++.|.+.+
T Consensus 162 ~~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~----------~i~~l~~~l~~~~ 202 (208)
T 3clv_A 162 FQVDILEVQKYAQDN-------NLLFIQTSAKTGT----------NIKNIFYMLAEEI 202 (208)
T ss_dssp CCSCHHHHHHHHHHT-------TCEEEEECTTTCT----------THHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHc-------CCcEEEEecCCCC----------CHHHHHHHHHHHH
Confidence 123344555554432 4589999999998 9999999988765
No 50
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.79 E-value=8.9e-19 Score=167.63 Aligned_cols=159 Identities=18% Similarity=0.204 Sum_probs=112.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCccch
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDF 165 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df 165 (681)
...+|+++|+.++|||||+++|+.......... .+++......+.+++ ..+.||||||+.+|
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~ 76 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQA----------------TIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 76 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCC----------------CCSEEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC----------------ceeeEEEEEEEEECCeEEEEEEEECCCcHHH
Confidence 457899999999999999999997654322221 222223333344444 68999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
...+..+++.+|++|+|+|+++... .....++..+.. .++|+++|+||+|+.+.+. ....+........
T Consensus 77 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~------ 149 (179)
T 2y8e_A 77 RSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQ-VSTEEGERKAKEL------ 149 (179)
T ss_dssp GGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCC-SCHHHHHHHHHHH------
T ss_pred HHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCc-CCHHHHHHHHHHc------
Confidence 9999999999999999999987432 222334444433 3789999999999864321 1122333333222
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
.++++++||++|. |+..+++.|.+.++.
T Consensus 150 -~~~~~~~Sa~~~~----------~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 150 -NVMFIETSAKAGY----------NVKQLFRRVAAALPG 177 (179)
T ss_dssp -TCEEEEEBTTTTB----------SHHHHHHHHHHTCC-
T ss_pred -CCeEEEEeCCCCC----------CHHHHHHHHHHHHhh
Confidence 3589999999999 999999999987753
No 51
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.78 E-value=9.5e-19 Score=167.49 Aligned_cols=159 Identities=16% Similarity=0.205 Sum_probs=111.7
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCccc
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSD 164 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~d 164 (681)
....+|+++|++|+|||||+++|+..........+. |.+... ..+.+++ ..+.||||||+.+
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--------------~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~ 68 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTI--------------GVEFLN--KDLEVDGHFVTMQIWDTAGQER 68 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CC--------------SEEEEE--EEEEETTEEEEEEEEECCCCGG
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCce--------------eeeEEE--EEEEECCEEEEEEEEeCCCchh
Confidence 356899999999999999999999765432211111 333333 3344444 6899999999999
Q ss_pred hhHHHHHHHhhcceEEEEeeCCCCCchhh-HHHHHHHHH-------cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhh
Q 005713 165 FGGEVERILNMVEGVLLVVDSVEGPMPQT-RFVLKKALE-------FGHAVVVVVNKIDRPSARPDYVINSTFELFIELN 236 (681)
Q Consensus 165 f~~e~~~~l~~aD~~llVvDa~~g~~~qt-~~~l~~~~~-------~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~ 236 (681)
|...+..+++.+|++|+|+|+.+....+. ..++..+.. .++|+++|+||+|+... ....+++..+...
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~--~~~~~~~~~~~~~-- 144 (177)
T 1wms_A 69 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER--QVSTEEAQAWCRD-- 144 (177)
T ss_dssp GHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC--SSCHHHHHHHHHH--
T ss_pred hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccccc--ccCHHHHHHHHHh--
Confidence 99999999999999999999987543222 223333322 56899999999998632 2223344443331
Q ss_pred cccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 237 ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 237 ~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
...++++++||++|. |+.++++.+.+.+.
T Consensus 145 ----~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 145 ----NGDYPYFETSAKDAT----------NVAAAFEEAVRRVL 173 (177)
T ss_dssp ----TTCCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred ----cCCceEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 124579999999999 99999999987763
No 52
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.78 E-value=1.2e-18 Score=192.66 Aligned_cols=162 Identities=27% Similarity=0.333 Sum_probs=114.6
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc--
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD-- 164 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d-- 164 (681)
+..++|+++|++|+|||||+++|++...... +...|+|.+.....+.+++..++||||||+.+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~---------------~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~ 237 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIV---------------SNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKG 237 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEE---------------C---------CCEEEEETTEEEEETTHHHHTCBT
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceee---------------cCCCCceeeeeEEEEEECCeEEEEEECCCcCcCc
Confidence 3568999999999999999999997643211 11237888888888899999999999999943
Q ss_pred --------hhHH-HHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHh
Q 005713 165 --------FGGE-VERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIEL 235 (681)
Q Consensus 165 --------f~~e-~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l 235 (681)
|... ...+++.+|++|+|+|++++...|+..++..+.+.++|+++|+||+|+.+.+. ...+++.+.+.+.
T Consensus 238 ~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~ 316 (436)
T 2hjg_A 238 KVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDE-STMKEFEENIRDH 316 (436)
T ss_dssp TBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCT-THHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcch-HHHHHHHHHHHHh
Confidence 4332 23578899999999999999999999999999889999999999999976432 1122222222211
Q ss_pred hcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHh
Q 005713 236 NATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (681)
Q Consensus 236 ~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~ 276 (681)
.. ....+|++++||++|. |+..+++.+.+
T Consensus 317 l~--~~~~~~~~~~SA~tg~----------~v~~l~~~i~~ 345 (436)
T 2hjg_A 317 FQ--FLDYAPILFMSALTKK----------RIHTLMPAIIK 345 (436)
T ss_dssp CG--GGTTSCEEECCTTTCT----------TGGGHHHHHHH
T ss_pred cc--cCCCCCEEEEecccCC----------CHHHHHHHHHH
Confidence 11 1124689999999999 66666655544
No 53
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.78 E-value=5.2e-19 Score=172.89 Aligned_cols=162 Identities=17% Similarity=0.194 Sum_probs=110.2
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
.+...+|+++|+.|+|||||+++|+..........+ .|.+.......+......+.||||||+.+|
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t--------------~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 88 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKST--------------VGVDFKIKTVELRGKKIRLQIWDTAGQERF 88 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CC--------------TTEEEEEEEEEETTEEEEEEEEEECCSGGG
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCc--------------cceeEEEEEEEECCeEEEEEEEeCCCcHHH
Confidence 445689999999999999999999865433211111 133443333333323468999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCchhh-HHHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPMPQT-RFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~~qt-~~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
...+..+++.+|++|+|+|+++....+. ..++..+.. .++|+++|+||+|+...+ ....+++..+...+
T Consensus 89 ~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~-~v~~~~~~~~~~~~------ 161 (192)
T 2il1_A 89 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR-EITRQQGEKFAQQI------ 161 (192)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC-CSCHHHHHHHHHTS------
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc-ccCHHHHHHHHHhc------
Confidence 9999999999999999999987544333 233344433 378999999999986432 11122333332221
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
..++++++||++|. |+.++++.|.+.+
T Consensus 162 ~~~~~~~~SA~~g~----------gi~~l~~~l~~~i 188 (192)
T 2il1_A 162 TGMRFCEASAKDNF----------NVDEIFLKLVDDI 188 (192)
T ss_dssp TTCEEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 24689999999999 9999999988765
No 54
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.78 E-value=5.9e-19 Score=173.41 Aligned_cols=163 Identities=17% Similarity=0.132 Sum_probs=109.3
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
.....+|+++|+.++|||||+++|+..........+ .|.++......+......++||||||+.+|
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t--------------~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 90 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISAT--------------LGVDFQMKTLIVDGERTVLQLWDTAGQERF 90 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC------------------------CEEEEEEETTEEEEEEEEECTTCTTC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCC--------------ccceeEEEEEEECCEEEEEEEEECCCCcch
Confidence 446789999999999999999999976543211111 134444444444444578999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCchhh-HHHHHHHHH---cCCEEEEEEeecCCCCCC----cccc-hhhHHHHHHHhh
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPMPQT-RFVLKKALE---FGHAVVVVVNKIDRPSAR----PDYV-INSTFELFIELN 236 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~~qt-~~~l~~~~~---~gip~ivviNKiD~~~~~----~~~~-~~ei~~~~~~l~ 236 (681)
...+..+++.+|++|+|+|+++....+. ..++..+.. .++|+++|+||+|+.+.. ...+ .++...+...
T Consensus 91 ~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~-- 168 (199)
T 2p5s_A 91 RSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMT-- 168 (199)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHH--
T ss_pred hhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHH--
Confidence 9999999999999999999987543333 333444433 378999999999985311 1111 1222222222
Q ss_pred cccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 237 ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 237 ~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
..++++++||++|. |+.++++.|.+.+.
T Consensus 169 -----~~~~~~~~SA~~g~----------gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 169 -----YGALFCETSAKDGS----------NIVEAVLHLAREVK 196 (199)
T ss_dssp -----HTCEEEECCTTTCT----------THHHHHHHHHHHHT
T ss_pred -----cCCeEEEeeCCCCC----------CHHHHHHHHHHHHH
Confidence 24589999999999 99999999988764
No 55
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.78 E-value=1.1e-18 Score=169.99 Aligned_cols=161 Identities=19% Similarity=0.284 Sum_probs=112.7
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCC----
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPG---- 161 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPG---- 161 (681)
....++|+++|+.|+|||||+++|++..+...... ..|.|.......+ +..+.||||||
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--------------~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~ 82 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSS--------------KPGKTQTLNFYII---NDELHFVDVPGYGFA 82 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC---------------------------CCEEEEEE---TTTEEEEECCCBCCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCC--------------CCCceeeEEEEEE---CCcEEEEECCCCCcc
Confidence 34678999999999999999999987643211111 1133433332222 34799999999
Q ss_pred ------ccchhHHHHHHHhhc---ceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCC-cccchhhHHHH
Q 005713 162 ------HSDFGGEVERILNMV---EGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSAR-PDYVINSTFEL 231 (681)
Q Consensus 162 ------h~df~~e~~~~l~~a---D~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~-~~~~~~ei~~~ 231 (681)
+..|...+..+++.+ |++++|+|++++.......+++.+...++|+++|+||+|+...+ .....+++.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~ 162 (195)
T 1svi_A 83 KVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQT 162 (195)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHH
Confidence 666777777777777 99999999999888887777888888899999999999987543 11112222221
Q ss_pred HHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 232 FIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 232 ~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
+.. ...++++++||++|. |+.++++.|.+.++
T Consensus 163 ---~~~---~~~~~~~~~Sa~~~~----------gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 163 ---LNI---DPEDELILFSSETKK----------GKDEAWGAIKKMIN 194 (195)
T ss_dssp ---HTC---CTTSEEEECCTTTCT----------THHHHHHHHHHHHT
T ss_pred ---Hcc---cCCCceEEEEccCCC----------CHHHHHHHHHHHhc
Confidence 221 235689999999998 99999999987664
No 56
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.78 E-value=1.1e-18 Score=174.93 Aligned_cols=161 Identities=20% Similarity=0.257 Sum_probs=113.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
+..+|+|+|..++|||||+++|+...+......++ |..+......+....++++||||+|+++|..
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Ti--------------g~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~ 77 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI--------------GIDFLSKTMYLEDRTIRLQLWDTAGLERFRS 77 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC------------------------CEEEEEECSSCEEEEEEECCSCTTTCGG
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCcc--------------ceEEEEEEEEecceEEEEEEEECCCchhhhh
Confidence 45789999999999999999999876643333332 3333344444444557899999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCC-chhhHHHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 168 EVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
....+++.+|++|+|+|.++.. +.....+|..+.. .++|+++|+||+|+.+.+ .-..++...+..++ +
T Consensus 78 l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r-~V~~~e~~~~a~~~-------~ 149 (216)
T 4dkx_A 78 LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKR-QVSIEEGERKAKEL-------N 149 (216)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGC-CSCHHHHHHHHHHH-------T
T ss_pred HHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcC-cccHHHHhhHHHHh-------C
Confidence 9999999999999999988632 2233445554443 368999999999987543 12234444444443 3
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
++++++||++|. |+.++|+.|++.++.
T Consensus 150 ~~~~e~SAktg~----------nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 150 VMFIETSAKAGY----------NVKQLFRRVAAALPG 176 (216)
T ss_dssp CEEEEEBTTTTB----------SHHHHHHHHHHHC--
T ss_pred CeeEEEeCCCCc----------CHHHHHHHHHHHHHh
Confidence 579999999999 999999999988864
No 57
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=4.4e-19 Score=173.00 Aligned_cols=161 Identities=20% Similarity=0.155 Sum_probs=119.1
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
.+...+|+|+|+.++|||||+++|+..........+. |++.......+......+.||||||+.+|
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 85 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTV--------------GIDFKVKTVYRHEKRVKLQIWDTAGQERY 85 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEE--------------TTTEEEEEEEETTTTEEEEEECHHHHHHC
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCe--------------eeEEEEEEEEECCEEEEEEEEeCCChHHH
Confidence 3457899999999999999999999875432222211 55566666666677889999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
...+..+++.+|++|+|+|+++... .....++..+.. .++|+++|+||+|+...+. ...++...+....
T Consensus 86 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~------ 158 (191)
T 3dz8_A 86 RTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERV-VPTEKGQLLAEQL------ 158 (191)
T ss_dssp HHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC-SCHHHHHHHHHHH------
T ss_pred HHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc-cCHHHHHHHHHHc------
Confidence 9999999999999999999987422 233345555554 4789999999999864321 1223333333332
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.++++++||++|. |+.++++.|.+.+
T Consensus 159 -~~~~~~~Sa~~~~----------gi~~l~~~l~~~i 184 (191)
T 3dz8_A 159 -GFDFFEASAKENI----------SVRQAFERLVDAI 184 (191)
T ss_dssp -TCEEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred -CCeEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 3579999999999 9999999988765
No 58
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.78 E-value=4.7e-19 Score=172.35 Aligned_cols=161 Identities=19% Similarity=0.178 Sum_probs=117.2
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
+...+|+++|+.++|||||+++|+..........+ .|++.......+......++||||||+.+|.
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t--------------~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 85 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVST--------------VGIDFKVKTVYRHDKRIKLQIWDTAGQERYR 85 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCC--------------CCCEEEEEEEEETTEEEEEEEEECCSCCSSC
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCc--------------eeEEEEEEEEEECCeEEEEEEEeCCCcHHHh
Confidence 34689999999999999999999986543222221 1555555544455556789999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHHc---CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~~---gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
..+..+++.+|++|+|+|+++... .....++..+... ++|+++|+||+|+...+ ....+++..+...+
T Consensus 86 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~------- 157 (189)
T 2gf9_A 86 TITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDER-VVPAEDGRRLADDL------- 157 (189)
T ss_dssp CSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC-CSCHHHHHHHHHHH-------
T ss_pred hhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc-CCCHHHHHHHHHHc-------
Confidence 888889999999999999987432 2333455555553 78999999999986432 11123344443333
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.++++++||++|. |+.++++.|.+.++
T Consensus 158 ~~~~~~~Sa~~g~----------gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 158 GFEFFEASAKENI----------NVKQVFERLVDVIC 184 (189)
T ss_dssp TCEEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 3579999999999 99999999987653
No 59
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.78 E-value=1.3e-18 Score=167.72 Aligned_cols=159 Identities=18% Similarity=0.231 Sum_probs=111.1
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
....+|+++|+.|+|||||+++|+..........+. +... .....+......++||||||+.+|.
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~ 80 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTI--------------EDSY-LKHTEIDNQWAILDVLDTAGQEEFS 80 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTC--------------CEEE-EEEEEETTEEEEEEEEECCSCGGGC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc--------------ccee-EEEEEeCCcEEEEEEEECCCchhhH
Confidence 356899999999999999999999765433322221 2222 2222233333567789999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchh-hHHHHHHHH----HcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQ-TRFVLKKAL----EFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~q-t~~~l~~~~----~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
.....+++.+|++|+|+|+++....+ ...++..+. ..++|+++|+||+|+.+.+ ....+++..+....
T Consensus 81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~v~~~~~~~~~~~~------ 153 (183)
T 3kkq_A 81 AMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLR-KVTRDQGKEMATKY------ 153 (183)
T ss_dssp SSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTC-CSCHHHHHHHHHHH------
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhcc-CcCHHHHHHHHHHh------
Confidence 99999999999999999998742221 223333332 3578999999999987533 22233344444333
Q ss_pred CCceEEEeecc-cCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 242 CDFQAIYASGI-QGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 242 ~~~pvi~~SA~-~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.++++++||+ +|. |+.++|+.|.+.+
T Consensus 154 -~~~~~~~Sa~~~~~----------~v~~l~~~l~~~i 180 (183)
T 3kkq_A 154 -NIPYIETSAKDPPL----------NVDKTFHDLVRVI 180 (183)
T ss_dssp -TCCEEEEBCSSSCB----------SHHHHHHHHHHHH
T ss_pred -CCeEEEeccCCCCC----------CHHHHHHHHHHHH
Confidence 3579999999 998 9999999998764
No 60
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.78 E-value=6.9e-19 Score=166.62 Aligned_cols=159 Identities=14% Similarity=0.174 Sum_probs=111.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
...+|+++|+.|+|||||+++|+..........+. |.+.......+......+.||||||+.+|..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 69 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTI--------------GVDFLERQIQVNDEDVRLMLWDTAGQEEFDA 69 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCC--------------SSSEEEEEEEETTEEEEEEEECCTTGGGTTC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCce--------------EEEEEEEEEEECCEEEEEEEEcCCCcHhHHH
Confidence 46789999999999999999999864432222111 3333333333333346899999999999998
Q ss_pred HHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH--cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCc
Q 005713 168 EVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE--FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~--~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~ 244 (681)
.+..+++.+|++++|+|+++... .....++..+.. .+.|+++|+||+|+...+ ....+++..+.... .+
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~-------~~ 141 (168)
T 1z2a_A 70 ITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDS-CIKNEEAEGLAKRL-------KL 141 (168)
T ss_dssp CCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGC-SSCHHHHHHHHHHH-------TC
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCccc-ccCHHHHHHHHHHc-------CC
Confidence 88999999999999999987432 223334444433 379999999999986432 11233344443332 35
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
+++++||++|. |+.++++.|.+.+
T Consensus 142 ~~~~~Sa~~~~----------~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 142 RFYRTSVKEDL----------NVSEVFKYLAEKH 165 (168)
T ss_dssp EEEECBTTTTB----------SSHHHHHHHHHHH
T ss_pred eEEEEecCCCC----------CHHHHHHHHHHHH
Confidence 79999999999 8999999988764
No 61
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=2.7e-18 Score=166.68 Aligned_cols=163 Identities=20% Similarity=0.203 Sum_probs=113.5
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
.+..+|+++|+.|+|||||+++|+..... .... |+......+.+++..+.||||||+.+|.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~------------------t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 74 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSP------------------TIGSNVEEIVINNTRFLMWDIGGQESLR 74 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEEC------------------CSCSSCEEEEETTEEEEEEECCC----C
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcC------------------CCccceEEEEECCEEEEEEECCCCHhHH
Confidence 35689999999999999999999975432 1111 1112233456678999999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCC-chhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 167 GEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
..+..+++.+|++|+|+|+++.. ......++..+.. .+.|+++|+||+|+.+.. ..+++.+.+..... ..
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~--~~ 149 (187)
T 1zj6_A 75 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM---TVAEISQFLKLTSI--KD 149 (187)
T ss_dssp GGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTGGGC--CS
T ss_pred HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCC---CHHHHHHHhChhhh--cC
Confidence 98899999999999999998863 3334445555544 479999999999997532 12333333321111 12
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCcc
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI 283 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~ 283 (681)
..++++++||++|. |+.++++.|.+.++.+..
T Consensus 150 ~~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 150 HQWHIQACCALTGE----------GLCQGLEWMMSRLKIRLE 181 (187)
T ss_dssp SCEEEEECBTTTTB----------THHHHHHHHHHHHCC---
T ss_pred CCcEEEEccCCCCc----------CHHHHHHHHHHHHHHHhh
Confidence 35689999999999 999999999998876543
No 62
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.78 E-value=6.4e-19 Score=170.27 Aligned_cols=159 Identities=19% Similarity=0.205 Sum_probs=112.4
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCccc
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSD 164 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~d 164 (681)
+...+|+++|+.|+|||||+++|+.......... .++.......+.+++ ..+.||||||+.+
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 71 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNH----------------TIGVEFGSKIINVGGKYVKLQIWDTAGQER 71 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCC----------------CSEEEEEEEEEEETTEEEEEEEEEECCSGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC----------------ccceEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 4568999999999999999999998654432222 222222333344444 6899999999999
Q ss_pred hhHHHHHHHhhcceEEEEeeCCCCCchhh-HHHHHHHH---HcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 165 FGGEVERILNMVEGVLLVVDSVEGPMPQT-RFVLKKAL---EFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 165 f~~e~~~~l~~aD~~llVvDa~~g~~~qt-~~~l~~~~---~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
|...+..+++.+|++|+|+|+++....+. ..++..+. ..++|+++|+||+|+...+. ....+...+...
T Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~------ 144 (186)
T 2bme_A 72 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADRE-VTFLEASRFAQE------ 144 (186)
T ss_dssp GHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCC-SCHHHHHHHHHH------
T ss_pred HHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccc-cCHHHHHHHHHH------
Confidence 99999999999999999999987433222 23333333 34789999999999864321 112333333322
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
..++++++||++|. |+.++++.+.+.+.
T Consensus 145 -~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 145 -NELMFLETSALTGE----------NVEEAFVQCARKIL 172 (186)
T ss_dssp -TTCEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred -cCCEEEEecCCCCC----------CHHHHHHHHHHHHH
Confidence 24689999999999 89999999887664
No 63
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.78 E-value=9.2e-19 Score=166.08 Aligned_cols=157 Identities=21% Similarity=0.233 Sum_probs=109.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC--CeEEEEEeCCCccch
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--DTKINIIDTPGHSDF 165 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~i~iiDTPGh~df 165 (681)
...+|+++|++|+|||||+++|++.........+. +.+.. ...+.++ ...+.||||||+.+|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~--------------~~~~~--~~~~~~~~~~~~~~l~D~~G~~~~ 65 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTI--------------GIDFK--IKTVDINGKKVKLQIWDTAGQERF 65 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC---------------------CCEE--EEEEESSSCEEEEEEECCTTGGGT
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCcc--------------ceeEE--EEEEEECCEEEEEEEEeCCCChhh
Confidence 35789999999999999999999765432111111 22222 2333444 468999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCch-hhHHHHHHHHHc---CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~~~---gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
...+..+++.+|++|+|+|+++.... ....++..+... ++|+++|+||+|+.... ...++...+....
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~------ 137 (170)
T 1g16_A 66 RTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV--VTADQGEALAKEL------ 137 (170)
T ss_dssp SCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCC--SCHHHHHHHHHHH------
T ss_pred hhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCc--cCHHHHHHHHHHc------
Confidence 98889999999999999999875332 223444444443 78999999999984321 2223333333332
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.++++++||++|. |+..+++.|.+.+.
T Consensus 138 -~~~~~~~Sa~~~~----------gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 138 -GIPFIESSAKNDD----------NVNEIFFTLAKLIQ 164 (170)
T ss_dssp -TCCEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred -CCeEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 3579999999999 99999999987764
No 64
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.78 E-value=2.5e-18 Score=167.33 Aligned_cols=160 Identities=19% Similarity=0.217 Sum_probs=114.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
+..+|+++|+.|+|||||+++|+..........+. |.++ ..+.+.+..++||||||+.+|..
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~----~~~~~~~~~~~l~Dt~G~~~~~~ 82 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTV--------------GFNM----RKITKGNVTIKLWDIGGQPRFRS 82 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCC--------------SEEE----EEEEETTEEEEEEEECCSHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCC--------------ceeE----EEEEeCCEEEEEEECCCCHhHHH
Confidence 46789999999999999999999865432211111 2222 34667889999999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCC-chhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 168 EVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
.+..+++.+|++|+|+|+++.. ......++..+.. .++|+++|+||+|+..... ..++.+.+.... ....
T Consensus 83 ~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~~~~~--~~~~ 157 (188)
T 1zd9_A 83 MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALD---EKELIEKMNLSA--IQDR 157 (188)
T ss_dssp THHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC---HHHHHHHTTGGG--CCSS
T ss_pred HHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCC---HHHHHHHhChhh--hccC
Confidence 9999999999999999998743 2333344444433 4789999999999975421 122222211111 1124
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
.++++++||++|. |+.++++.|.+.+..
T Consensus 158 ~~~~~~~SA~~g~----------gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 158 EICCYSISCKEKD----------NIDITLQWLIQHSKS 185 (188)
T ss_dssp CEEEEECCTTTCT----------THHHHHHHHHHTCC-
T ss_pred CeeEEEEECCCCC----------CHHHHHHHHHHHHHh
Confidence 5789999999999 999999999987753
No 65
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.78 E-value=7.5e-19 Score=170.99 Aligned_cols=168 Identities=18% Similarity=0.172 Sum_probs=113.5
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeee-EEeeCCeEEEEEeCCCccch
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNT-SITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~-~~~~~~~~i~iiDTPGh~df 165 (681)
....+|+++|+.|+|||||++.|.+. ......... .......+...|.+...... .+......++||||||+.+|
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEM---VSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY 87 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCC---EEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhh-ccccccccc---cccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence 34689999999999999999666543 221111100 00000111112333333222 34445678999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHH---------cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhh
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALE---------FGHAVVVVVNKIDRPSARPDYVINSTFELFIELN 236 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~---------~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~ 236 (681)
...+..+++.+|++|+|+|++++...+....+..+.. .++|+++|+||+|+.+. ...+++.+.+..
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~~~~-- 162 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA---LPVEMVRAVVDP-- 162 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC---CCHHHHHHHHCT--
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc---cCHHHHHHHHHh--
Confidence 9999999999999999999997655555544443332 47899999999998754 233444444332
Q ss_pred cccccCCc-eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 237 ATDEQCDF-QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 237 ~~~~~~~~-pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
..+ +++++||++|. |+.++++.|.+.+
T Consensus 163 -----~~~~~~~~~Sa~~~~----------gv~~l~~~l~~~i 190 (198)
T 3t1o_A 163 -----EGKFPVLEAVATEGK----------GVFETLKEVSRLV 190 (198)
T ss_dssp -----TCCSCEEECBGGGTB----------THHHHHHHHHHHH
T ss_pred -----cCCceEEEEecCCCc----------CHHHHHHHHHHHH
Confidence 234 79999999999 9999999988765
No 66
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.77 E-value=8.5e-19 Score=168.07 Aligned_cols=159 Identities=19% Similarity=0.225 Sum_probs=110.7
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCcc
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHS 163 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~ 163 (681)
.....+|+++|+.|+|||||+++|+..........+. +..+. ..+.+++ ..+.||||||+.
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~--------------~~~~~---~~~~~~~~~~~~~~~Dt~G~~ 68 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTI--------------EDSYT---KICSVDGIPARLDILDTAGQE 68 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTC--------------CEEEE---EEEEETTEEEEEEEEECCCTT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCc--------------CceEE---EEEEECCEEEEEEEEECCCch
Confidence 3457899999999999999999999875433222221 22221 2233443 688999999999
Q ss_pred chhHHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHH----HHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcc
Q 005713 164 DFGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKA----LEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT 238 (681)
Q Consensus 164 df~~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~----~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~ 238 (681)
+|...+..+++.+|++++|+|+++... .....++..+ ...++|+++|+||+|+...+. ...++...+...
T Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~~~~---- 143 (181)
T 2fn4_A 69 EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ-VPRSEASAFGAS---- 143 (181)
T ss_dssp TTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCC-SCHHHHHHHHHH----
T ss_pred hhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccc-cCHHHHHHHHHH----
Confidence 999989999999999999999987422 2222333333 234789999999999864321 112222222222
Q ss_pred cccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 239 DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 239 ~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
..++++++||++|. |+.++++.|.+.+.
T Consensus 144 ---~~~~~~~~Sa~~~~----------gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 144 ---HHVAYFEASAKLRL----------NVDEAFEQLVRAVR 171 (181)
T ss_dssp ---TTCEEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred ---cCCeEEEecCCCCC----------CHHHHHHHHHHHHH
Confidence 24589999999999 99999999987764
No 67
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.77 E-value=5.2e-18 Score=160.25 Aligned_cols=156 Identities=17% Similarity=0.169 Sum_probs=111.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEV 169 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~ 169 (681)
.+|+++|+.|+|||||+++|+....... .. |+......+.+++..++||||||+.+|...+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~-~~------------------t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 61 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-IP------------------TIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCC-CC------------------CSSCCEEEEECSSCEEEEEECCCCGGGHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcc-cC------------------cCceeEEEEEECCEEEEEEEcCCChhhHHHH
Confidence 3799999999999999999987654311 11 1112233456678999999999999999999
Q ss_pred HHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCc
Q 005713 170 ERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDF 244 (681)
Q Consensus 170 ~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~ 244 (681)
..+++.+|++|+|+|+++... .....++..+.. .+.|+++|+||+|+.+... ..++.+.+... ......+
T Consensus 62 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~--~~~~~~~ 136 (164)
T 1r8s_A 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLH--SLRHRNW 136 (164)
T ss_dssp HHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHTTGG--GCSSCCE
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC---HHHHHHHhCcc--cccCccE
Confidence 999999999999999987532 233344444433 2789999999999975421 22232222111 1112357
Q ss_pred eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 245 QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 245 pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
+++++||++|. |+.++++.|.+.+.
T Consensus 137 ~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 137 YIQATCATSGD----------GLYEGLDWLSNQLR 161 (164)
T ss_dssp EEEECBTTTTB----------THHHHHHHHHHHC-
T ss_pred EEEEcccCCCc----------CHHHHHHHHHHHHh
Confidence 89999999999 99999999998774
No 68
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=170.82 Aligned_cols=161 Identities=16% Similarity=0.172 Sum_probs=112.6
Q ss_pred cCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCc
Q 005713 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGH 162 (681)
Q Consensus 85 ~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh 162 (681)
..+...+|+++|+.++|||||+++|+.......... .++.......+.+++ ..+.||||||+
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~----------------t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 88 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGS----------------TIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC--------------------------CEEEEEEEETTEEEEEEEECCTTC
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCC----------------CcceEEEEEEEEECCEEEEEEEEECCCc
Confidence 345578999999999999999999987654321111 112222233344444 68999999999
Q ss_pred cchhHHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcc
Q 005713 163 SDFGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT 238 (681)
Q Consensus 163 ~df~~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~ 238 (681)
.+|...+..+++.+|++|+|+|+++... .....++..+.. .++|+++|+||+|+...+. ...+++.++....
T Consensus 89 ~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~-v~~~~~~~~~~~~--- 164 (201)
T 2hup_A 89 ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELRE-VSLAEAQSLAEHY--- 164 (201)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCC-SCHHHHHHHHHHT---
T ss_pred HhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccc-cCHHHHHHHHHHc---
Confidence 9999999999999999999999886432 223344555544 4689999999999865321 1233444444332
Q ss_pred cccCCc-eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 239 DEQCDF-QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 239 ~~~~~~-pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.+ +++++||++|. |+.++++.|.+.+.
T Consensus 165 ----~~~~~~~~SA~~g~----------gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 165 ----DILCAIETSAKDSS----------NVEEAFLRVATELI 192 (201)
T ss_dssp ----TCSEEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred ----CCCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 34 79999999999 99999999988774
No 69
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.77 E-value=7.5e-19 Score=168.61 Aligned_cols=161 Identities=20% Similarity=0.235 Sum_probs=100.7
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC---CeEEEEEeCCCc
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN---DTKINIIDTPGH 162 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---~~~i~iiDTPGh 162 (681)
.....+|+++|+.|+|||||+++|+..........+. |.+.. ...+.+. ...+.||||||+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--------------~~~~~--~~~~~~~~~~~~~~~l~Dt~G~ 68 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATI--------------GADFL--TKEVTVDGDKVATMQVWDTAGQ 68 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---C--------------CCSCE--EEEECCSSSCCEEEEEECCC--
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCcc--------------ceEEE--EEEEEEcCCcEEEEEEEECCCC
Confidence 3457899999999999999999999865432221111 22222 2223333 468999999999
Q ss_pred cchhHHHHHHHhhcceEEEEeeCCCCCchhh-HHHHHHHHH-------cCCEEEEEEeecCCCCCCcccchhhHHHHHHH
Q 005713 163 SDFGGEVERILNMVEGVLLVVDSVEGPMPQT-RFVLKKALE-------FGHAVVVVVNKIDRPSARPDYVINSTFELFIE 234 (681)
Q Consensus 163 ~df~~e~~~~l~~aD~~llVvDa~~g~~~qt-~~~l~~~~~-------~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~ 234 (681)
.+|...+..+++.+|++|+|+|+++....+. ..++..+.. .++|+++|+||+|+.........+++..+...
T Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~ 148 (182)
T 1ky3_A 69 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS 148 (182)
T ss_dssp --------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH
T ss_pred hHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh
Confidence 9999888889999999999999987543222 233333332 47899999999998643221223333333221
Q ss_pred hhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 235 LNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 235 l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
...++++++||++|. |+..+++.|.+.+
T Consensus 149 ------~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 149 ------LGDIPLFLTSAKNAI----------NVDTAFEEIARSA 176 (182)
T ss_dssp ------TTSCCEEEEBTTTTB----------SHHHHHHHHHHHH
T ss_pred ------cCCCeEEEEecCCCC----------CHHHHHHHHHHHH
Confidence 124679999999999 9999999998765
No 70
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.77 E-value=1.6e-18 Score=167.93 Aligned_cols=161 Identities=17% Similarity=0.140 Sum_probs=112.8
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC-----------CeEE
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN-----------DTKI 154 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~-----------~~~i 154 (681)
.+...+|+++|+.|+|||||+++|+..........+. |.+... ...+.+. ...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 72 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTV--------------GIDFRE-KRVVYRANGPDGAVGRGQRIHL 72 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCC--------------SEEEEE-EEEEECTTSCCCSSCCCEEEEE
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCccccc--------------ceeeee-EEEEEecCCcccccccCcEEEE
Confidence 3456899999999999999999999765432221111 222220 1122222 4689
Q ss_pred EEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhh-HHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHH
Q 005713 155 NIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQT-RFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTF 229 (681)
Q Consensus 155 ~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt-~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~ 229 (681)
+||||||+.+|...+..+++.+|++|+|+|+++....+. ..++..+.. .++|+++|+||+|+...+ ....+++.
T Consensus 73 ~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~ 151 (195)
T 3bc1_A 73 QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQR-AVKEEEAR 151 (195)
T ss_dssp EEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGC-CSCHHHHH
T ss_pred EEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc-ccCHHHHH
Confidence 999999999999999999999999999999987543333 344444444 478999999999986432 11223344
Q ss_pred HHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 230 ELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 230 ~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.+.... .++++++||++|. |+..+++.|.+.+.
T Consensus 152 ~~~~~~-------~~~~~~~Sa~~~~----------~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 152 ELAEKY-------GIPYFETSAANGT----------NISHAIEMLLDLIM 184 (195)
T ss_dssp HHHHHH-------TCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred HHHHHc-------CCCEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 443332 3579999999998 99999999887653
No 71
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=165.11 Aligned_cols=159 Identities=15% Similarity=0.161 Sum_probs=103.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc--h
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD--F 165 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d--f 165 (681)
...+|+++|++|+|||||+++|++........ ..|.+.......+......+.||||||+.. +
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 67 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE---------------QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDK 67 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CC---------------CSSSSEEEEEEEETTEEEEEEEECCC-------
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccC---------------ccccceeEEEEEECCEEEEEEEEecCCCCccch
Confidence 45789999999999999999998764432111 125555444444433346889999999988 5
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHHc----CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF----GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~~----gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
......+++.+|++++|+|+++... .....++..+... ++|+++|+||+|+.+.+. ...++...+...
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~-v~~~~~~~~~~~------ 140 (175)
T 2nzj_A 68 SWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCRE-VSVEEGRACAVV------ 140 (175)
T ss_dssp CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCC-SCHHHHHHHHHH------
T ss_pred hhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccc-cCHHHHHHHHHH------
Confidence 5556667888999999999886432 2233445555543 789999999999975431 112233332222
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
..++++++||++|. |+.++++.|.+.+.
T Consensus 141 -~~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 141 -FDCKFIETSATLQH----------NVAELFEGVVRQLR 168 (175)
T ss_dssp -HTSEEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred -cCCeEEEEecCCCC----------CHHHHHHHHHHHHH
Confidence 23589999999999 99999999987663
No 72
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=8.9e-19 Score=173.18 Aligned_cols=162 Identities=19% Similarity=0.188 Sum_probs=112.7
Q ss_pred ccCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCC
Q 005713 84 MRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPG 161 (681)
Q Consensus 84 ~~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPG 161 (681)
...+...+|+++|+.|+|||||+++|+..........+. |++.. ...+.+++ ..++||||||
T Consensus 21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~--------------~~~~~--~~~~~~~~~~~~l~l~Dt~G 84 (201)
T 2ew1_A 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATI--------------GVDFM--IKTVEINGEKVKLQIWDTAG 84 (201)
T ss_dssp -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCC--------------SEEEE--EEEEEETTEEEEEEEEEECC
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCcc--------------ceeEE--EEEEEECCEEEEEEEEECCC
Confidence 344567899999999999999999999865432221111 33332 33344444 6899999999
Q ss_pred ccchhHHHHHHHhhcceEEEEeeCCCCCchh-hHHHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhc
Q 005713 162 HSDFGGEVERILNMVEGVLLVVDSVEGPMPQ-TRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNA 237 (681)
Q Consensus 162 h~df~~e~~~~l~~aD~~llVvDa~~g~~~q-t~~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~ 237 (681)
+.+|...+..+++.+|++|+|+|+++....+ ...++..+.. .++|+++|+||+|+.+.+ ....++...+...
T Consensus 85 ~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~-~v~~~~~~~~~~~--- 160 (201)
T 2ew1_A 85 QERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERR-EVSQQRAEEFSEA--- 160 (201)
T ss_dssp SGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC-SSCHHHHHHHHHH---
T ss_pred cHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc-ccCHHHHHHHHHH---
Confidence 9999998999999999999999988743222 2334444443 368999999999986432 1112233333222
Q ss_pred ccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 238 TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 238 ~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
..++++++||++|. |+.++++.|.+.+.
T Consensus 161 ----~~~~~~~~Sa~~g~----------gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 161 ----QDMYYLETSAKESD----------NVEKLFLDLACRLI 188 (201)
T ss_dssp ----HTCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred ----cCCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 23579999999999 99999999887664
No 73
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=3.2e-18 Score=162.45 Aligned_cols=160 Identities=17% Similarity=0.124 Sum_probs=111.2
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
..+|+++|+.|+|||||+++|+..........+. +.+.. ....+......+.||||||+.+|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~--------------~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~ 67 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV--------------EDTYR-QVISCDKSICTLQITDTTGSHQFPAM 67 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCS--------------CEEEE-EEEEETTEEEEEEEEECCSCSSCHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCc--------------cccEE-EEEEECCEEEEEEEEECCCchhhHHH
Confidence 4689999999999999999999764432221111 11211 12223333468999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCC-chhhHHHHHHHHH-----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 169 VERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE-----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~-----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
+..+++.+|++|+|+|+++.. ......++..+.+ .++|+++|+||+|+...+. ....+...+... .
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~-v~~~~~~~~~~~-------~ 139 (172)
T 2erx_A 68 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSRE-VQSSEAEALART-------W 139 (172)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCC-SCHHHHHHHHHH-------H
T ss_pred HHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccc-cCHHHHHHHHHH-------h
Confidence 999999999999999998643 2233445554444 2689999999999864321 111222222222 2
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
.++++++||++|. |+..+++.|.+.+...
T Consensus 140 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 140 KCAFMETSAKLNH----------NVKELFQELLNLEKRR 168 (172)
T ss_dssp TCEEEECBTTTTB----------SHHHHHHHHHHTCCSS
T ss_pred CCeEEEecCCCCc----------CHHHHHHHHHHHHhhh
Confidence 3579999999999 9999999999987654
No 74
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.77 E-value=5.5e-19 Score=169.41 Aligned_cols=161 Identities=17% Similarity=0.185 Sum_probs=113.4
Q ss_pred cCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCc
Q 005713 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGH 162 (681)
Q Consensus 85 ~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh 162 (681)
..+...+|+++|+.|+|||||+++|+......... .+++.......+.+.+ ..++||||||+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 68 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYI----------------TTIGVDFKIRTVEINGEKVKLQIWDTAGQ 68 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCT----------------TTBSEEEEEEEEEETTEEEEEEEEEETTG
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccC----------------CCceeEEEEEEEEECCEEEEEEEEcCCCc
Confidence 34567899999999999999999998654332111 1334444444555565 78999999999
Q ss_pred cchhHHHHHHHhhcceEEEEeeCCCCCchhh-HHHHHHHHHc--CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccc
Q 005713 163 SDFGGEVERILNMVEGVLLVVDSVEGPMPQT-RFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (681)
Q Consensus 163 ~df~~e~~~~l~~aD~~llVvDa~~g~~~qt-~~~l~~~~~~--gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~ 239 (681)
.+|...+..+++.+|++|+|+|+++....+. ..++..+... ++|+++|+||+|+...+.. ...+...+....
T Consensus 69 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~---- 143 (181)
T 3tw8_B 69 ERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVV-ETEDAYKFAGQM---- 143 (181)
T ss_dssp GGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCS-CHHHHHHHHHHH----
T ss_pred hhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhccc-CHHHHHHHHHHc----
Confidence 9998888889999999999999988533322 2344444433 5899999999998654311 112233333222
Q ss_pred ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 240 ~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.++++++||++|. |+..+++.|.+.+.
T Consensus 144 ---~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 144 ---GIQLFETSAKENV----------NVEEMFNCITELVL 170 (181)
T ss_dssp ---TCCEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred ---CCeEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 3579999999999 99999999987764
No 75
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.77 E-value=2.5e-18 Score=162.29 Aligned_cols=158 Identities=18% Similarity=0.198 Sum_probs=107.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
+..+|+++|+.|+|||||+++|+..........+. +.+. .....+......+.||||||+.+|..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~ 67 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK--------------ADSY-RKKVVLDGEEVQIDILDTAGQEDYAA 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTC--------------CEEE-EEEEEETTEEEEEEEEECCC---CHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCc--------------ceEE-EEEEEECCEEEEEEEEECCCcchhHH
Confidence 35789999999999999999999865432222221 1121 11122233346899999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCCch-hhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
.+..+++.+|++++|+|+++.... ....++..+.. .++|+++|+||+|+.+.+ +...+++.......
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~------- 139 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR-QVSVEEAKNRADQW------- 139 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGC-CSCHHHHHHHHHHH-------
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccC-ccCHHHHHHHHHHc-------
Confidence 999999999999999999864322 22233333333 378999999999986532 11233444443332
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.++++++||++|. |+.++++.+.+.+
T Consensus 140 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~i 165 (168)
T 1u8z_A 140 NVNYVETSAKTRA----------NVDKVFFDLMREI 165 (168)
T ss_dssp TCEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred CCeEEEeCCCCCC----------CHHHHHHHHHHHH
Confidence 3579999999999 9999999998765
No 76
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=1.9e-18 Score=165.80 Aligned_cols=162 Identities=18% Similarity=0.182 Sum_probs=106.1
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
+...+|+++|+.++|||||+++|+........... ..+.+.......+......++||||||+.+|.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~-------------t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~ 74 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFIS-------------TVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR 74 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCC-------------CCSCEEEEEEEEETTEEEEEEEEECCCC----
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCC-------------ceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH
Confidence 45689999999999999999999986553211110 11333333333333334689999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchhh-HHHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQT-RFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~qt-~~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
..+..+++.+|++|+|+|+++....+. ..++..+.. .++|+++|+||+|+...+. ...++...+....
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~------- 146 (180)
T 2g6b_A 75 SVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERV-VKREDGEKLAKEY------- 146 (180)
T ss_dssp ----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCC-SCHHHHHHHHHHH-------
T ss_pred HHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccc-cCHHHHHHHHHHc-------
Confidence 888889999999999999987543222 334444444 5789999999999975431 1223333333322
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.++++++||++|. |+..+++.+.+.+.
T Consensus 147 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 147 GLPFMETSAKTGL----------NVDLAFTAIAKELK 173 (180)
T ss_dssp TCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 3579999999998 99999999988764
No 77
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.77 E-value=4.2e-19 Score=170.97 Aligned_cols=160 Identities=18% Similarity=0.162 Sum_probs=109.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
+..+|+++|+.|+|||||+++|+..........+. +.+. .....+....+.++||||||+.+|..
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~ 69 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI--------------ENTF-TKLITVNGQEYHLQLVDTAGQDEYSI 69 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTC--------------CEEE-EEEEEETTEEEEEEEEECCCCCTTCC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCc--------------cccE-EEEEEECCEEEEEEEEeCCCchhhhH
Confidence 46799999999999999999999765433222222 3333 22222333336789999999999987
Q ss_pred HHHHHHhhcceEEEEeeCCCCCchh-hHHHHHHHH----HcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMPQ-TRFVLKKAL----EFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~q-t~~~l~~~~----~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
....+++.+|++|+|+|+++..... ...++..+. ..++|+++|+||+|+...+ ....++...+....
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~------- 141 (181)
T 3t5g_A 70 FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMER-VISYEEGKALAESW------- 141 (181)
T ss_dssp CCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTC-CSCHHHHHHHHHHT-------
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcc-eecHHHHHHHHHHh-------
Confidence 7788899999999999998732221 222332332 3478999999999986543 12233444443333
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
.++++++||++|. |+.++|+.+.+.+..
T Consensus 142 ~~~~~~~Sa~~~~----------~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 142 NAAFLESSAKENQ----------TAVDVFRRIILEAEK 169 (181)
T ss_dssp TCEEEECCTTSHH----------HHHHHHHHHHHHHHT
T ss_pred CCcEEEEecCCCC----------CHHHHHHHHHHHHHH
Confidence 4579999999999 899999999887744
No 78
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.77 E-value=4.1e-19 Score=171.36 Aligned_cols=159 Identities=19% Similarity=0.166 Sum_probs=88.2
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCccc
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSD 164 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~d 164 (681)
+...+|+++|+.|+|||||+++|+......... .+++.......+.+++ ..++||||||+.+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~----------------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFI----------------STIGIDFKIRTIELDGKRIKLQIWDTAGQER 69 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHH----------------HHHCEEEEEEEEEETTEEEEEEEEEC-----
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCC----------------CcccceeEEEEEEECCEEEEEEEEcCCCChh
Confidence 456899999999999999999998654321111 1233333333444455 7899999999999
Q ss_pred hhHHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHHc---CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 165 FGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 165 f~~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~~---gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
|...+..+++.+|++|+|+|+++... .....++..+... ++|+++|+||+|+.+.+ ....+++..+....
T Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~----- 143 (183)
T 2fu5_C 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR-QVSKERGEKLALDY----- 143 (183)
T ss_dssp ----CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCC-CSCHHHHHHHHHHH-----
T ss_pred hhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccC-cCCHHHHHHHHHHc-----
Confidence 98888888999999999999987432 2333455555543 68999999999997543 11233444443332
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.++++++||++|. |+..+++.|.+.+.
T Consensus 144 --~~~~~~~Sa~~~~----------~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 144 --GIKFMETSAKANI----------NVENAFFTLARDIK 170 (183)
T ss_dssp --TCEEEECCC---C----------CHHHHHHHHHHHHH
T ss_pred --CCeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 3579999999999 99999999987764
No 79
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.77 E-value=2.4e-18 Score=162.72 Aligned_cols=158 Identities=16% Similarity=0.203 Sum_probs=109.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
..+|+++|++|+|||||+++|+..........+. +... .....+......+.||||||+.+|...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~ 67 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI--------------EDSY-RKQVEVDCQQCMLEILDTAGTEQFTAM 67 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCS--------------EEEE-EEEEESSSCEEEEEEEEECSSCSSTTH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCc--------------cceE-EEEEEECCEEEEEEEEECCChHHHHHH
Confidence 4689999999999999999999864432222221 1111 122223334578999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 169 VERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
+..+++.+|++++|+|+++... .....++..+.. .++|+++|+||+|+.+.+ ....+++..+...+ ..
T Consensus 68 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~------~~ 140 (167)
T 1c1y_A 68 RDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER-VVGKEQGQNLARQW------CN 140 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGC-CSCHHHHHHHHHHT------TS
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccc-cCCHHHHHHHHHHc------cC
Confidence 9999999999999999887422 122233333333 378999999999986432 11223334333322 14
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
++++++||++|. |+.++++.|.+.+
T Consensus 141 ~~~~~~Sa~~~~----------gi~~l~~~l~~~i 165 (167)
T 1c1y_A 141 CAFLESSAKSKI----------NVNEIFYDLVRQI 165 (167)
T ss_dssp CEEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred CcEEEecCCCCC----------CHHHHHHHHHHHH
Confidence 689999999999 9999999998765
No 80
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.77 E-value=1.2e-18 Score=169.41 Aligned_cols=161 Identities=19% Similarity=0.186 Sum_probs=108.2
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
.+..+|+++|+.++|||||+++|+..........+. |.++......+......++||||||+.+|.
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 83 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATI--------------GVDFRERAVDIDGERIKIQLWDTAGQERFR 83 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCC--------------SCCEEEEEEEETTEEEEEEEEECCCSHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCc--------------ceEEEEEEEEECCEEEEEEEEECCCchhhh
Confidence 356899999999999999999999765432222111 333333333333334789999999999998
Q ss_pred -HHHHHHHhhcceEEEEeeCCCCCch-hhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 167 -GEVERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 167 -~e~~~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
..+..+++.+|++|+|+|+++.... ....++..+.. .++|+++|+||+|+...+ +...++...+...
T Consensus 84 ~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~------ 156 (189)
T 1z06_A 84 KSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAI-QVPTDLAQKFADT------ 156 (189)
T ss_dssp TTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGC-CSCHHHHHHHHHH------
T ss_pred hhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc-eeCHHHHHHHHHH------
Confidence 7788899999999999999874322 22233333333 468999999999986432 1112223332222
Q ss_pred cCCceEEEeecccC---CCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 241 QCDFQAIYASGIQG---KAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 241 ~~~~pvi~~SA~~G---~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
..++++++||++| . ++..+++.|.+.++
T Consensus 157 -~~~~~~~~Sa~~~~~~~----------~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 157 -HSMPLFETSAKNPNDND----------HVEAIFMTLAHKLK 187 (189)
T ss_dssp -TTCCEEECCSSSGGGGS----------CHHHHHHHHC----
T ss_pred -cCCEEEEEeCCcCCccc----------CHHHHHHHHHHHHh
Confidence 2357999999999 6 88999999987664
No 81
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.77 E-value=1.9e-18 Score=164.22 Aligned_cols=158 Identities=21% Similarity=0.161 Sum_probs=114.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
+..+|+++|+.|+|||||+++|+....... . .|+......+.+++..+.||||||+.+|..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~------------------~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~ 66 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTT-I------------------PTIGFNVETVTYKNLKFQVWDLGGLTSIRP 66 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-C------------------CCSSEEEEEEEETTEEEEEEEECCCGGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCc-C------------------CcCccceEEEEECCEEEEEEECCCChhhhH
Confidence 468899999999999999999987644211 1 111122344667789999999999999998
Q ss_pred HHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 168 EVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
.+..+++.+|++|+|+|+++... .....++..+.. .++|+++|+||+|+.+... ..++.+.+.... ....
T Consensus 67 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~--~~~~ 141 (171)
T 1upt_A 67 YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT---SSEMANSLGLPA--LKDR 141 (171)
T ss_dssp GGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHHTGGG--CTTS
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC---HHHHHHHhCchh--ccCC
Confidence 88889999999999999987532 333344444433 4799999999999976431 223333221111 1224
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.++++++||++|. |+.++++.+.+.++
T Consensus 142 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 142 KWQIFKTSATKGT----------GLDEAMEWLVETLK 168 (171)
T ss_dssp CEEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred ceEEEECcCCCCc----------CHHHHHHHHHHHHh
Confidence 5689999999999 99999999988764
No 82
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.77 E-value=1.3e-18 Score=166.59 Aligned_cols=161 Identities=21% Similarity=0.214 Sum_probs=112.4
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC---eEEEEEeCCCcc
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND---TKINIIDTPGHS 163 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~---~~i~iiDTPGh~ 163 (681)
.+..+|+++|++++|||||+++|+..........+ .|.+.. ...+.+.+ ..++||||||+.
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t--------------~~~~~~--~~~~~~~~~~~~~~~~~Dt~G~~ 67 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQT--------------IGLDFF--LRRITLPGNLNVTLQIWDIGGQT 67 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHT--------------TTSSEE--EEEEEETTTEEEEEEEEECTTCC
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCc--------------eeEEEE--EEEEEeCCCCEEEEEEEECCCCc
Confidence 34678999999999999999999976543111111 122232 23344444 789999999999
Q ss_pred chhHHHHHHHhhcceEEEEeeCCCCCchh-hHHHHHHHHHc-----CCE-EEEEEeecCCCCCCcccchhhHHHHHHHhh
Q 005713 164 DFGGEVERILNMVEGVLLVVDSVEGPMPQ-TRFVLKKALEF-----GHA-VVVVVNKIDRPSARPDYVINSTFELFIELN 236 (681)
Q Consensus 164 df~~e~~~~l~~aD~~llVvDa~~g~~~q-t~~~l~~~~~~-----gip-~ivviNKiD~~~~~~~~~~~ei~~~~~~l~ 236 (681)
+|...+..+++.+|++|+|+|+++....+ ...++..+... +.| +++|+||+|+.+.+. ...++...+....
T Consensus 68 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~-~~~~~~~~~~~~~- 145 (178)
T 2hxs_A 68 IGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRT-IKPEKHLRFCQEN- 145 (178)
T ss_dssp TTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCS-SCHHHHHHHHHHH-
T ss_pred cccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccc-cCHHHHHHHHHHc-
Confidence 99999999999999999999998753322 23344444432 556 789999999864321 1123333333322
Q ss_pred cccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 237 ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 237 ~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
.++++++||++|. |+..+++.|.+.++..
T Consensus 146 ------~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 146 ------GFSSHFVSAKTGD----------SVFLCFQKVAAEILGI 174 (178)
T ss_dssp ------TCEEEEECTTTCT----------THHHHHHHHHHHHTTC
T ss_pred ------CCcEEEEeCCCCC----------CHHHHHHHHHHHHHhh
Confidence 3579999999998 9999999999887543
No 83
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.77 E-value=1.3e-18 Score=169.71 Aligned_cols=159 Identities=19% Similarity=0.176 Sum_probs=111.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
...+|+++|+.|+|||||+++|+..........+. |.+.......+......++||||||+.+|..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 85 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI--------------GVEFGARMVNIDGKQIKLQIWDTAGQESFRS 85 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----C--------------CSSEEEEEEEETTEEEEEEEECCTTGGGTSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc--------------cceeEEEEEEECCEEEEEEEEECCCchhhhh
Confidence 46799999999999999999999865432221111 3334333333333346899999999999998
Q ss_pred HHHHHHhhcceEEEEeeCCCCCchh-hHHHHHHHHHc---CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMPQ-TRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~q-t~~~l~~~~~~---gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
.+..+++.+|++|+|+|+++....+ ...++..+... ++|+++|+||+|+...+ ....++...+.... .
T Consensus 86 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~-------~ 157 (191)
T 2a5j_A 86 ITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRR-DVKREEGEAFAREH-------G 157 (191)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC-CSCHHHHHHHHHHH-------T
T ss_pred hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCcc-ccCHHHHHHHHHHc-------C
Confidence 8899999999999999998743322 23444455443 78999999999986432 11123333333322 3
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
++++++||++|. |+.++++.|.+.+
T Consensus 158 ~~~~~~Sa~~~~----------gi~~l~~~l~~~i 182 (191)
T 2a5j_A 158 LIFMETSAKTAC----------NVEEAFINTAKEI 182 (191)
T ss_dssp CEEEEECTTTCT----------THHHHHHHHHHHH
T ss_pred CEEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 579999999998 9999999988765
No 84
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.77 E-value=9.6e-19 Score=166.13 Aligned_cols=161 Identities=20% Similarity=0.176 Sum_probs=105.9
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
+...+|+++|+.|+|||||+++|+..........+. |.+.......+......+.||||||+.+|.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 69 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTL--------------GASFLTKKLNIGGKRVNLAIWDTAGQERFH 69 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCC--------------SCEEEEEEEESSSCEEEEEEEECCCC----
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCcc--------------ceEEEEEEEEECCEEEEEEEEECCCcHhhh
Confidence 346789999999999999999999765432222211 333333333333344688999999999998
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchh-hHHHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQ-TRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~q-t~~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
.....+++.+|++|+|+|+++....+ ...++..+.. .++|+++|+||+|+.+.+. ...+++..+....
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~~------- 141 (170)
T 1z08_A 70 ALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERH-VSIQEAESYAESV------- 141 (170)
T ss_dssp ---CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCC-SCHHHHHHHHHHT-------
T ss_pred hhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccc-cCHHHHHHHHHHc-------
Confidence 88888899999999999998743322 2233333333 4789999999999864321 1223344433332
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.++++++||++|. |+.++++.|.+.++
T Consensus 142 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 142 GAKHYHTSAKQNK----------GIEELFLDLCKRMI 168 (170)
T ss_dssp TCEEEEEBTTTTB----------SHHHHHHHHHHHHH
T ss_pred CCeEEEecCCCCC----------CHHHHHHHHHHHHh
Confidence 3579999999999 99999999987653
No 85
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.77 E-value=1e-18 Score=171.99 Aligned_cols=161 Identities=18% Similarity=0.178 Sum_probs=111.9
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
....+|+|+|+.|+|||||+++|+..........+. |.+.......+......+.||||||+.+|.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 71 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATI--------------GADFLTKEVMVDDRLVTMQIWDTAGQERFQ 71 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCC--------------SEEEEEEEEESSSCEEEEEEEEECSSGGGS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcc--------------cceEEEEEEEECCEEEEEEEEeCCCcHHHH
Confidence 457899999999999999999999875442222211 333333333333344789999999999998
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchhhH-HHHHHHHH-------cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcc
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQTR-FVLKKALE-------FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT 238 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~qt~-~~l~~~~~-------~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~ 238 (681)
..+..+++.+|++|+|+|+++....+.. .++..+.. .++|+++|+||+|+.... ...+++..+...
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~---- 145 (207)
T 1vg8_A 72 SLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ--VATKRAQAWCYS---- 145 (207)
T ss_dssp CSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC--SCHHHHHHHHHH----
T ss_pred HhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccc--cCHHHHHHHHHh----
Confidence 8888889999999999999875432222 23333322 378999999999987322 223333333221
Q ss_pred cccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 239 DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 239 ~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
...++++++||++|. |+..+++.|.+.+.
T Consensus 146 --~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 146 --KNNIPYFETSAKEAI----------NVEQAFQTIARNAL 174 (207)
T ss_dssp --TTSCCEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred --cCCceEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 234679999999999 99999999988764
No 86
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.77 E-value=1.5e-18 Score=167.79 Aligned_cols=158 Identities=20% Similarity=0.215 Sum_probs=112.0
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
..+..+|+++|+.++|||||+++|++.... ....+ .|. ....+.+++..+.||||||+.+|
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~t--------------~~~----~~~~~~~~~~~~~i~Dt~G~~~~ 78 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPT--------------IGS----NVEEIVINNTRFLMWDIGGQESL 78 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCE-EEECC--------------SSS----SCEEEEETTEEEEEEEESSSGGG
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCC-ccCCc--------------Cce----eeEEEEECCEEEEEEECCCCHhH
Confidence 335689999999999999999999976441 00000 022 22345667899999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
...+..+++.+|++|+|+|+++... .....++..+.. .++|+++|+||+|+.... ..+++.+.+.... ..
T Consensus 79 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~--~~ 153 (181)
T 2h17_A 79 RSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM---TVAEISQFLKLTS--IK 153 (181)
T ss_dssp TCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGG--CC
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCC---CHHHHHHHhCccc--cc
Confidence 9888889999999999999987633 334445555543 579999999999987532 1223333221111 12
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
...++++++||++|. |+.++++.|.+.
T Consensus 154 ~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~ 180 (181)
T 2h17_A 154 DHQWHIQACCALTGE----------GLCQGLEWMMSR 180 (181)
T ss_dssp SSCEEEEECBTTTTB----------THHHHHHHHHTC
T ss_pred CCceEEEEccCCCCc----------CHHHHHHHHHhh
Confidence 245689999999999 999999998764
No 87
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=2.6e-18 Score=167.07 Aligned_cols=160 Identities=22% Similarity=0.171 Sum_probs=116.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
...+|+++|+.++|||||+++|+..........+ .|.+.......+......+.||||||+.+|..
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t--------------~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 79 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAAT--------------IGVDFKVKTISVDGNKAKLAIWDTAGQERFRT 79 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCC--------------CSEEEEEEEEEETTEEEEEEEEEECSSGGGCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCc--------------cceEEEEEEEEECCeEEEEEEEeCCCchhhhh
Confidence 3578999999999999999999986543222222 14555555555555567899999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCCchh-hHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMPQ-TRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~q-t~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
.+..+++.+|++|+|+|+.+..... ...++..+.. .++|+++|+||+|+.... ...++...+... .
T Consensus 80 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~-------~ 150 (195)
T 1x3s_A 80 LTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENRE--VDRNEGLKFARK-------H 150 (195)
T ss_dssp SHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCC--SCHHHHHHHHHH-------T
T ss_pred hhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccc--cCHHHHHHHHHH-------c
Confidence 9999999999999999998753322 2334445544 368999999999985322 122333333332 2
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
.++++++||++|. |+..+++.|.+.+..
T Consensus 151 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 151 SMLFIEASAKTCD----------GVQCAFEELVEKIIQ 178 (195)
T ss_dssp TCEEEECCTTTCT----------THHHHHHHHHHHHHT
T ss_pred CCEEEEecCCCCC----------CHHHHHHHHHHHHHh
Confidence 4579999999999 999999999987754
No 88
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.77 E-value=1.7e-18 Score=163.38 Aligned_cols=157 Identities=18% Similarity=0.222 Sum_probs=108.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
..+|+++|++|+|||||+++|+..........+. + +.......+......+.||||||+.+|...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 67 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTI--------------E-DFYRKEIEVDSSPSVLEILDTAGTEQFASM 67 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTC--------------C-EEEEEEEEETTEEEEEEEEECCCTTCCHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCc--------------c-eeEEEEEEECCEEEEEEEEECCCchhhHHH
Confidence 4689999999999999999999865432222221 1 111222223333456999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCCch-hhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 169 VERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
...+++.+|++++|+|+.+.... ....++..+.. .+.|+++|+||+|+...+ +....+...+.... .
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~-------~ 139 (167)
T 1kao_A 68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESER-EVSSSEGRALAEEW-------G 139 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGC-CSCHHHHHHHHHHH-------T
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccc-cCCHHHHHHHHHHh-------C
Confidence 99999999999999999874322 22333333333 479999999999986432 11122333333322 3
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
+|++++||++|. |+.++++.|.+.+
T Consensus 140 ~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 164 (167)
T 1kao_A 140 CPFMETSAKSKT----------MVDELFAEIVRQM 164 (167)
T ss_dssp SCEEEECTTCHH----------HHHHHHHHHHHHH
T ss_pred CCEEEecCCCCc----------CHHHHHHHHHHHH
Confidence 579999999999 8999999988764
No 89
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.76 E-value=8.5e-18 Score=166.76 Aligned_cols=167 Identities=20% Similarity=0.230 Sum_probs=105.9
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC---CeEEEEEeCCCcc
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN---DTKINIIDTPGHS 163 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~---~~~i~iiDTPGh~ 163 (681)
.+..+|+++|+.|+|||||+++|+...+...... ++ .....+.++ +..++||||||+.
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~-----------------~~--~~~~~~~~~~~~~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTS-----------------IT--DSSAIYKVNNNRGNSLTLIDLPGHE 65 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCC-----------------CS--CEEEEEECSSTTCCEEEEEECCCCH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-----------------cc--eeeEEEEecCCCccEEEEEECCCCh
Confidence 3568999999999999999999998754322111 11 111224444 6789999999999
Q ss_pred chhH-HHHHHHhhcceEEEEeeCCCCCch---hhHHHHHHHH------HcCCEEEEEEeecCCCCCC-cccchhhHHHHH
Q 005713 164 DFGG-EVERILNMVEGVLLVVDSVEGPMP---QTRFVLKKAL------EFGHAVVVVVNKIDRPSAR-PDYVINSTFELF 232 (681)
Q Consensus 164 df~~-e~~~~l~~aD~~llVvDa~~g~~~---qt~~~l~~~~------~~gip~ivviNKiD~~~~~-~~~~~~ei~~~~ 232 (681)
+|.. .+..+++.+|++|+|+|+++ ... ....+|.... ..++|+++|+||+|+...+ .+...+.+.+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l 144 (214)
T 2fh5_B 66 SLRFQLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKEL 144 (214)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHH
Confidence 9988 67788999999999999976 222 2223333221 2368999999999997653 333444444433
Q ss_pred HHhh-------------------cc-------cccC--CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 233 IELN-------------------AT-------DEQC--DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 233 ~~l~-------------------~~-------~~~~--~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
..+. .. .+.+ .++++++||++|.+. ....|++++++.|.+.
T Consensus 145 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~----~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 145 NTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGD----TGSADIQDLEKWLAKI 213 (214)
T ss_dssp HHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-----------CCBCHHHHHHHHHH
T ss_pred HHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCcc----ccccChHHHHHHHHHh
Confidence 3110 00 0011 678999999999110 0111999999998765
No 90
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.76 E-value=4.3e-18 Score=165.33 Aligned_cols=160 Identities=18% Similarity=0.283 Sum_probs=115.4
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCC----
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPG---- 161 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPG---- 161 (681)
....++|+++|+.|+|||||+++|++........ . .|.|.... +...+..+.||||||
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~--------------~~~t~~~~---~~~~~~~~~i~Dt~G~~~~ 81 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSK-T--------------PGKTRSIN---FYLVNSKYYFVDLPGYGYA 81 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCS-S--------------CCCCCCEE---EEEETTTEEEEECCCBSSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccccccC-C--------------CCCccCeE---EEEECCcEEEEECCCCccc
Confidence 3456899999999999999999999865221111 1 13332222 222245788999999
Q ss_pred ------ccchhHHHHHHHhhc---ceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCC-cccchhhHHHH
Q 005713 162 ------HSDFGGEVERILNMV---EGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSAR-PDYVINSTFEL 231 (681)
Q Consensus 162 ------h~df~~e~~~~l~~a---D~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~-~~~~~~ei~~~ 231 (681)
+..|...+..+++.+ |++++|+|+..+.......++..+...++|+++|+||+|+.+.. .....+++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~ 161 (195)
T 3pqc_A 82 KVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKV 161 (195)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHH
T ss_pred cCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHH
Confidence 555666666666665 99999999998888888888888888899999999999987532 22233333333
Q ss_pred HHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 232 FIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 232 ~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
+... ..++++++||++|. |+.++++.|.+.++
T Consensus 162 ~~~~------~~~~~~~~Sa~~~~----------gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 162 FSKY------GEYTIIPTSSVTGE----------GISELLDLISTLLK 193 (195)
T ss_dssp HHSS------CCSCEEECCTTTCT----------THHHHHHHHHHHHC
T ss_pred Hhhc------CCCceEEEecCCCC----------CHHHHHHHHHHHhh
Confidence 3221 23579999999999 99999999988765
No 91
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.76 E-value=2.1e-18 Score=171.55 Aligned_cols=162 Identities=17% Similarity=0.165 Sum_probs=111.3
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC----------CeEEE
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN----------DTKIN 155 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~----------~~~i~ 155 (681)
.+...+|+|+|+.++|||||+++|+..........+ .+++.......+... ...++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 87 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITT--------------VGIDFREKRVVYNAQGPNGSSGKAFKVHLQ 87 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEE--------------EEEEEEEEEEEEEC-------CCEEEEEEE
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCc--------------eeEEEEEEEEEECCccccccccCceeEEEE
Confidence 345689999999999999999999876442111111 122222222333322 57899
Q ss_pred EEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhH-HHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHH
Q 005713 156 IIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTR-FVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFE 230 (681)
Q Consensus 156 iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~-~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~ 230 (681)
||||||+.+|...+..+++.+|++|+|+|+++....+.. .++..+.. .++|+++|+||+|+...+ ....+++..
T Consensus 88 l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~-~v~~~~~~~ 166 (217)
T 2f7s_A 88 LWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQR-EVNERQARE 166 (217)
T ss_dssp EEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGC-CSCHHHHHH
T ss_pred EEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCcccccc-ccCHHHHHH
Confidence 999999999999999999999999999999874333222 23333322 468999999999986432 111233333
Q ss_pred HHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 231 LFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 231 ~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
+.... .++++++||++|. |+..+++.|.+.+.
T Consensus 167 ~~~~~-------~~~~~~~Sa~~g~----------gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 167 LADKY-------GIPYFETSAATGQ----------NVEKAVETLLDLIM 198 (217)
T ss_dssp HHHHT-------TCCEEEEBTTTTB----------THHHHHHHHHHHHH
T ss_pred HHHHC-------CCcEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 33322 3579999999999 89999999887653
No 92
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.76 E-value=8.9e-19 Score=172.37 Aligned_cols=163 Identities=20% Similarity=0.153 Sum_probs=111.9
Q ss_pred cCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc
Q 005713 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (681)
Q Consensus 85 ~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d 164 (681)
+..+..+|+++|..|+|||||+++|+..........+. +.++ .....+......+.||||||+.+
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~~~l~Dt~G~~~ 84 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTV--------------ENTY-SKIVTLGKDEFHLHLVDTAGQDE 84 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCS--------------EEEE-EEEEC----CEEEEEEEECCCCT
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCcc--------------ceEE-EEEEEECCEEEEEEEEECCCccc
Confidence 44567899999999999999999999876543322222 2222 33444555678899999999999
Q ss_pred hhHHHHHHHhhcceEEEEeeCCCCCchh-hHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccc
Q 005713 165 FGGEVERILNMVEGVLLVVDSVEGPMPQ-TRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (681)
Q Consensus 165 f~~e~~~~l~~aD~~llVvDa~~g~~~q-t~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~ 239 (681)
|...+..+++.+|++|+|+|+++....+ ...++..+.. .++|+++|+||+|+...+. ....+...+....
T Consensus 85 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~~~~~---- 159 (201)
T 3oes_A 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPERE-VQAVEGKKLAESW---- 159 (201)
T ss_dssp TCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCC-SCHHHHHHHHHHH----
T ss_pred hHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccc-cCHHHHHHHHHHh----
Confidence 9888888999999999999998643222 2234444433 3789999999999864331 1122233333222
Q ss_pred ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 240 ~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
.++++++||++|. |+..+|+.|.+.+..
T Consensus 160 ---~~~~~~~Sa~~~~----------~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 160 ---GATFMESSARENQ----------LTQGIFTKVIQEIAR 187 (201)
T ss_dssp ---TCEEEECCTTCHH----------HHHHHHHHHHHHHHH
T ss_pred ---CCeEEEEeCCCCC----------CHHHHHHHHHHHHHh
Confidence 3579999999999 899999999887743
No 93
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.76 E-value=3.5e-18 Score=190.10 Aligned_cols=164 Identities=26% Similarity=0.335 Sum_probs=122.8
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCC-----
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPG----- 161 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPG----- 161 (681)
....+|+++|++++|||||+++|++....... ...|+|.+.....+.+++..++||||||
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~---------------~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~ 257 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS---------------NVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKG 257 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------------C------CTTSEEEEETTEEEEETTGGGTTTBT
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccC---------------CCCCeEEEEEEEEEEECCceEEEEECCCCCcCc
Confidence 35789999999999999999999865432111 1227788777788889999999999999
Q ss_pred -----ccchhHHHH-HHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHh
Q 005713 162 -----HSDFGGEVE-RILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIEL 235 (681)
Q Consensus 162 -----h~df~~e~~-~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l 235 (681)
++.|..... .+++.+|++|+|+|++++...++..++..+.+.++|+++|+||+|+.+.+. ...+++.+.+.+.
T Consensus 258 ~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~ 336 (456)
T 4dcu_A 258 KVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDE-STMKEFEENIRDH 336 (456)
T ss_dssp TBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCS-SHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCch-HHHHHHHHHHHHh
Confidence 566665443 578899999999999999999999999999999999999999999976542 2233333333322
Q ss_pred hcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 236 NATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 236 ~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
... ....|++++||++|. |+.+|++.+.+.+
T Consensus 337 ~~~--~~~~~~~~~SA~~g~----------gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 337 FQF--LDYAPILFMSALTKK----------RIHTLMPAIIKAS 367 (456)
T ss_dssp CGG--GTTSCEEECCTTTCT----------TGGGHHHHHHHHH
T ss_pred ccc--CCCCCEEEEcCCCCc----------CHHHHHHHHHHHH
Confidence 111 113589999999999 8888888887655
No 94
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.76 E-value=3.7e-18 Score=168.75 Aligned_cols=158 Identities=20% Similarity=0.204 Sum_probs=111.3
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCccc
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSD 164 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~d 164 (681)
....+|+++|++++|||||+++|+.......... +++.......+.+++ ..+.||||||+.+
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFIT----------------TIGIDFKIKTVDINGKKVKLQLWDTAGQER 81 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSC----------------CCSCCEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCC----------------cccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 3568999999999999999999997654322111 222222333444555 6899999999999
Q ss_pred hhHHHHHHHhhcceEEEEeeCCCCCch-hhHHHHHHHHHc---CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 165 FGGEVERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 165 f~~e~~~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~~~---gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
|...+..+++.+|++|+|+|+.+.... ....++..+... ++|+++|+||+|+.... ...++...+...+
T Consensus 82 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~----- 154 (213)
T 3cph_A 82 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV--VTADQGEALAKEL----- 154 (213)
T ss_dssp GTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCC--SCHHHHHHHHHHH-----
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc--cCHHHHHHHHHHc-----
Confidence 998889999999999999999874332 223444444443 78999999999984321 2223333333332
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.++++++||++|. |+..+++.|.+.++
T Consensus 155 --~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 155 --GIPFIESSAKNDD----------NVNEIFFTLAKLIQ 181 (213)
T ss_dssp --TCCEEECBTTTTB----------SSHHHHHHHHHHHH
T ss_pred --CCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 3579999999999 89999999887664
No 95
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.76 E-value=2.4e-18 Score=169.66 Aligned_cols=161 Identities=17% Similarity=0.181 Sum_probs=113.1
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
+...+|+++|+.|+|||||+++|+..........+. |.+.......+......+.||||||+.+|.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 71 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTI--------------GVDFKIKTVELDGKTVKLQIWDTAGQERFR 71 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSS--------------CCCEEEEEEEETTEEEEEEEECCTTTTTTT
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc--------------cceeEEEEEEECCEEEEEEEEeCCChHHHH
Confidence 456899999999999999999999865432222211 333333333333334689999999999998
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchhh-HHHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQT-RFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~qt-~~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
..+..+++.+|++|+|+|+++....+. ..++..+.. .++|+++|+||+|+...+. ...++...+... .
T Consensus 72 ~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~-------~ 143 (206)
T 2bcg_Y 72 TITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRV-VEYDVAKEFADA-------N 143 (206)
T ss_dssp CCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCC-SCHHHHHHHHHH-------T
T ss_pred HHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc-cCHHHHHHHHHH-------c
Confidence 888889999999999999987543222 334444443 3589999999999975431 122333333322 2
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.++++++||++|. |+..+++.|.+.+.
T Consensus 144 ~~~~~~~Sa~~g~----------gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 144 KMPFLETSALDST----------NVEDAFLTMARQIK 170 (206)
T ss_dssp TCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 3579999999999 89999999887664
No 96
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.76 E-value=1.5e-18 Score=173.40 Aligned_cols=160 Identities=15% Similarity=0.142 Sum_probs=117.8
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
.....+|+++|+.|+|||||+++|+.......... ..|++.......+...+..++||||||+.+|
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~--------------t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 77 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVA--------------TLGVEVHPLVFHTNRGPIKFNVWDTAGQEKF 77 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEET--------------TTTEEEEEEEEEETTEEEEEEEEEECSGGGT
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCC--------------ccceeEEEEEEEECCEEEEEEEEeCCChHHH
Confidence 34567999999999999999999765443221111 2267777777767667789999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCchhh-HHHHHHHHHc--CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPMPQT-RFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~~qt-~~~l~~~~~~--gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
...+..+++.+|++|+|+|+++....+. ..++..+... ++|+++|+||+|+.+..... +...+... .
T Consensus 78 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~---~~~~~~~~-------~ 147 (221)
T 3gj0_A 78 GGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA---KSIVFHRK-------K 147 (221)
T ss_dssp SCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCG---GGCCHHHH-------H
T ss_pred hHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccH---HHHHHHHH-------c
Confidence 9888999999999999999988543333 2344444443 78999999999997544222 22222222 2
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.++++++||++|. |+..+++.|.+.+.
T Consensus 148 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~l~ 174 (221)
T 3gj0_A 148 NLQYYDISAKSNY----------NFEKPFLWLARKLI 174 (221)
T ss_dssp TCEEEECBGGGTB----------TTTHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 3579999999999 89999999988764
No 97
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.76 E-value=7.2e-18 Score=165.60 Aligned_cols=158 Identities=18% Similarity=0.196 Sum_probs=112.3
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCccc
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSD 164 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~d 164 (681)
....+|+|+|+.|+|||||+++|+..........+. +.+. ...+.+.+ +.+.||||||+.+
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~---~~~~~~~~~~~~~~l~Dt~G~~~ 74 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK--------------ADSY---RKKVVLDGEEVQIDILDTAGQED 74 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTC--------------CEEE---EEEEEETTEEEEEEEEECCCTTC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcc--------------ceEE---EEEEEECCEEEEEEEEcCCChhh
Confidence 356899999999999999999999875432222221 2221 12233343 5899999999999
Q ss_pred hhHHHHHHHhhcceEEEEeeCCCCCch-hhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccc
Q 005713 165 FGGEVERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (681)
Q Consensus 165 f~~e~~~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~ 239 (681)
|...+..+++.+|++++|+|+++.... ....++..+.. .++|+++|+||+|+...+ ....+++..+....
T Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~---- 149 (206)
T 2bov_A 75 YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR-QVSVEEAKNRAEQW---- 149 (206)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGC-CSCHHHHHHHHHHH----
T ss_pred hHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccc-cccHHHHHHHHHHh----
Confidence 999999999999999999999874322 22333344433 278999999999986532 12233444444332
Q ss_pred ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 240 ~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.++++++||++|. |+..+++.|.+.+.
T Consensus 150 ---~~~~~~~Sa~~g~----------gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 150 ---NVNYVETSAKTRA----------NVDKVFFDLMREIR 176 (206)
T ss_dssp ---TCEEEEECTTTCT----------THHHHHHHHHHHHH
T ss_pred ---CCeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 3579999999999 99999999988764
No 98
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.76 E-value=3.4e-18 Score=162.88 Aligned_cols=153 Identities=19% Similarity=0.273 Sum_probs=107.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh--
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG-- 166 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~-- 166 (681)
..+|+++|++|+|||||+++|++....... ..|+|+......+.+++..+.+|||||+.+|.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 66 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGN----------------WPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTAN 66 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC---------------------CCCCCEEEEEETTEEEEEEECCCCSCSSSS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccC----------------CCCcceeeeEEEEEECCcEEEEEECCCcccCCCc
Confidence 468999999999999999999875332111 11455555555667788999999999998875
Q ss_pred ----HHHHHHHh--hcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 167 ----GEVERILN--MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 167 ----~e~~~~l~--~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
.....+++ .+|++++|+|+.+ ......++..+.+.++|+++|+||+|+...+. +..+...+...+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~i~v~D~~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~----- 137 (165)
T 2wji_A 67 SIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLG--IEIDVDKLEKIL----- 137 (165)
T ss_dssp SHHHHHHHHHHHHHCCSEEEEEEETTC--HHHHHHHHHHHHHTTCCEEEEEECHHHHHHTT--CCCCHHHHHHHH-----
T ss_pred chhHHHHHHHHhcCCCCEEEEEecCCc--hhHhHHHHHHHHhcCCCEEEEEEchHhccccC--hhhHHHHHHHHh-----
Confidence 23344554 7899999999876 23344566666777999999999999753221 111223332222
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.++++++||++|. |+.++++.+.+.+
T Consensus 138 --~~~~~~~SA~~~~----------~v~~l~~~l~~~~ 163 (165)
T 2wji_A 138 --GVKVVPLSAAKKM----------GIEELKKAISIAV 163 (165)
T ss_dssp --TSCEEECBGGGTB----------SHHHHHHHHHHHT
T ss_pred --CCCEEEEEcCCCC----------CHHHHHHHHHHHh
Confidence 2479999999999 9999999998765
No 99
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.76 E-value=3.1e-18 Score=162.58 Aligned_cols=158 Identities=17% Similarity=0.179 Sum_probs=99.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH-
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG- 167 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~- 167 (681)
..+|+++|++|+|||||+++|++..+........ +.........+......+.+|||||+.+|..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 67 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMEN--------------SEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW 67 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC--------------------------CEEEEEEEETTEEEEEEEECCCCC------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCC--------------cCCeeeEEEEECCeEEEEEEEECCCccccchh
Confidence 4689999999999999999998654432211111 1222222223333346888999999999876
Q ss_pred HHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHHc----CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 168 EVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF----GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~~----gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
....+++.+|++++|+|+++... .....++..+... ++|+++|+||+|+.+.+ ....++...+....
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~------- 139 (169)
T 3q85_A 68 LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSR-EVSLEEGRHLAGTL------- 139 (169)
T ss_dssp --CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGC-CSCHHHHHHHHHHT-------
T ss_pred hhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcc-cCCHHHHHHHHHHc-------
Confidence 55667889999999999987322 2233444444443 78999999999986432 12223333333222
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.++++++||++|. |+.++++.+.+.+
T Consensus 140 ~~~~~~~Sa~~~~----------~v~~l~~~l~~~i 165 (169)
T 3q85_A 140 SCKHIETSAALHH----------NTRELFEGAVRQI 165 (169)
T ss_dssp TCEEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred CCcEEEecCccCC----------CHHHHHHHHHHHH
Confidence 4579999999999 9999999998765
No 100
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.76 E-value=6.3e-18 Score=162.85 Aligned_cols=159 Identities=18% Similarity=0.195 Sum_probs=110.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
...+|+++|+.|+|||||+++|+..........+. +.+. .....+....+.+.||||||+.+|..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~ 81 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK--------------ADSY-RKKVVLDGEEVQIDILDTAGQEDYAA 81 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTC--------------CEEE-EEEEEETTEEEEEEEEECCCTTCCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcc--------------ceEE-EEEEEECCEEEEEEEEECCCCcccHH
Confidence 46899999999999999999999865432222221 1111 11122222335899999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCCch-hhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
.+..+++.+|++|+|+|+.+.... ....++..+.. .++|+++|+||+|+.+.+. ...+++..+... .
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~-------~ 153 (187)
T 2a9k_A 82 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQ-VSVEEAKNRAEQ-------W 153 (187)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCC-SCHHHHHHHHHH-------T
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCc-cCHHHHHHHHHH-------c
Confidence 999999999999999999864321 22233333333 3789999999999865321 223344444433 2
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.++++++||++|. |+.++++.|.+.+.
T Consensus 154 ~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 154 NVNYVETSAKTRA----------NVDKVFFDLMREIR 180 (187)
T ss_dssp TCEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred CCeEEEeCCCCCC----------CHHHHHHHHHHHHH
Confidence 4579999999999 99999999987653
No 101
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.76 E-value=1.1e-17 Score=157.32 Aligned_cols=156 Identities=17% Similarity=0.177 Sum_probs=108.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
..+|+++|+.|+|||||+++|+..........+. +... .....+....+.+.||||||+.+|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~--------------~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~ 67 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTI--------------EDSY-RKQVVIDGETCLLDILDTAGQEEYSAM 67 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTC--------------CEEE-EEEEEETTEEEEEEEEECCCCSSCCHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCcc--------------ceEE-EEEEEECCEEEEEEEEECCCchhhhHH
Confidence 3589999999999999999999765432222211 1111 112222223467899999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHHc----CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 169 VERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF----GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~~----gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
+..++..+|++++|+|+.+... .....++..+... ++|+++|+||+|+.... ...+++..+.... .
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~-------~ 138 (166)
T 2ce2_X 68 RDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAART--VESRQAQDLARSY-------G 138 (166)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC--SCHHHHHHHHHHH-------T
T ss_pred HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcc--cCHHHHHHHHHHc-------C
Confidence 9999999999999999886432 2223444444432 79999999999987522 2233444443332 3
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
++++++||++|. |+.++++.|.+.+
T Consensus 139 ~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 139 IPYIETSAKTRQ----------GVEDAFYTLVREI 163 (166)
T ss_dssp CCEEEECTTTCT----------THHHHHHHHHHHH
T ss_pred CeEEEecCCCCC----------CHHHHHHHHHHHH
Confidence 579999999999 9999999998765
No 102
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=1.5e-18 Score=169.39 Aligned_cols=160 Identities=18% Similarity=0.151 Sum_probs=111.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCccch
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDF 165 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df 165 (681)
...+|+++|+.++|||||+++|+...+......+. +..+ ...+.+.+ ..+.||||||+.+|
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~--------------~~~~---~~~~~~~~~~~~~~i~D~~G~~~~ 79 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV--------------FDHY---AVSVTVGGKQYLLGLYDTAGQEDY 79 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSS--------------CCCE---EEEEESSSCEEEEEEECCCCSSSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc--------------ccee---EEEEEECCEEEEEEEEECCCCcch
Confidence 46799999999999999999999875432222221 1111 11233333 78999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCchhh-H-HHHHHHHHc--CCEEEEEEeecCCCCCCc-----------ccchhhHHH
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPMPQT-R-FVLKKALEF--GHAVVVVVNKIDRPSARP-----------DYVINSTFE 230 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~~qt-~-~~l~~~~~~--gip~ivviNKiD~~~~~~-----------~~~~~ei~~ 230 (681)
...+..+++.+|++|+|+|+++...-+. . .++..+... ++|+++|+||+|+..... .-..++...
T Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (194)
T 2atx_A 80 DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK 159 (194)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHH
T ss_pred hHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHH
Confidence 9888888999999999999987533222 2 345555555 799999999999975420 111223333
Q ss_pred HHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 231 LFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 231 ~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
+...++. .+++++||++|. |+.++++.|.+.+..
T Consensus 160 ~~~~~~~------~~~~~~Sa~~g~----------gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 160 LAKEIGA------CCYVECSALTQK----------GLKTVFDEAIIAILT 193 (194)
T ss_dssp HHHHHTC------SCEEECCTTTCT----------THHHHHHHHHHHHHC
T ss_pred HHHHcCC------cEEEEeeCCCCC----------CHHHHHHHHHHHHhc
Confidence 3333221 279999999999 999999999887644
No 103
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.76 E-value=5.8e-18 Score=163.58 Aligned_cols=157 Identities=18% Similarity=0.187 Sum_probs=106.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
..+|+++|+.|+|||||+++|+..........+. .+.......+......++||||||+.+|...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~---------------~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 68 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI---------------EDSYRKQVVIDGETCLLDILDTAGQEEYSAM 68 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTC---------------CEEEEEEEEETTEEEEEEEEECCCC---CTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc---------------hheEEEEEEECCcEEEEEEEECCCcHHHHHH
Confidence 5789999999999999999999765433222221 1111122222233356889999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCCch-hhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 169 VERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
+..+++.+|++++|+|+.+.... ....++..+.. .++|+++|+||+|+.... ...+++..+.... .
T Consensus 69 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~--~~~~~~~~~~~~~-------~ 139 (189)
T 4dsu_A 69 RDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRT--VDTKQAQDLARSY-------G 139 (189)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCS--SCHHHHHHHHHHH-------T
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccc--cCHHHHHHHHHHc-------C
Confidence 99999999999999999874322 22233333333 378999999999987432 2223333333332 3
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
++++++||++|. |+.++++.|.+.+.
T Consensus 140 ~~~~~~Sa~~g~----------gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 140 IPFIETSAKTRQ----------GVDDAFYTLVREIR 165 (189)
T ss_dssp CCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 579999999999 99999999988764
No 104
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.76 E-value=2.3e-18 Score=168.15 Aligned_cols=163 Identities=18% Similarity=0.115 Sum_probs=114.4
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
.....+|+++|+.|+|||||+++|+..........+. +.++. ....+....+.++||||||+.+|
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~--------------~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~ 84 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTV--------------FENFS-HVMKYKNEEFILHLWDTAGQEEY 84 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCS--------------EEEEE-EEEEETTEEEEEEEEEECCSGGG
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCee--------------eeeeE-EEEEECCEEEEEEEEECCCcHHH
Confidence 3456899999999999999999999876533222222 22221 12222333466799999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCchhh--HHHHHHHHHc--CCEEEEEEeecCCCCCC-cccchhhHHHHHHHhhcccc
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPMPQT--RFVLKKALEF--GHAVVVVVNKIDRPSAR-PDYVINSTFELFIELNATDE 240 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~~qt--~~~l~~~~~~--gip~ivviNKiD~~~~~-~~~~~~ei~~~~~~l~~~~~ 240 (681)
...+..+++.+|++|+|+|+++...... ..++..+... ++|+++|+||+|+...+ .....+++..+...++
T Consensus 85 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---- 160 (194)
T 3reg_A 85 DRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLG---- 160 (194)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHT----
T ss_pred HHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcC----
Confidence 9888889999999999999987533322 2344444443 68999999999987542 2223344444444443
Q ss_pred cCCce-EEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 241 QCDFQ-AIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 241 ~~~~p-vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
++ ++++||++|. |+.++++.+.+.+..
T Consensus 161 ---~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 161 ---CVAYIEASSVAKI----------GLNEVFEKSVDCIFS 188 (194)
T ss_dssp ---CSCEEECBTTTTB----------SHHHHHHHHHHHHHC
T ss_pred ---CCEEEEeecCCCC----------CHHHHHHHHHHHHHh
Confidence 34 8999999999 999999999987643
No 105
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.76 E-value=4.1e-18 Score=161.29 Aligned_cols=156 Identities=13% Similarity=0.115 Sum_probs=93.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
..+|+++|++|+|||||+++|++........ ..|.+.. ....+......+.+|||||+.+|...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~---------------~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~ 65 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAE---------------AAGHTYD-RSIVVDGEEASLMVYDIWEQDGGRWL 65 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-------------------------CEEE-EEEEETTEEEEEEEEECC--------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCC---------------ccccceE-EEEEECCEEEEEEEEECCCCccchhh
Confidence 4689999999999999999997543221110 1133332 22334444578899999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHHc----CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC
Q 005713 169 VERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALEF----GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD 243 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~~----gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~ 243 (681)
...+++.+|++++|+|+++... .....++..+... ++|+++|+||+|+...+. ...++...+... ..
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~-------~~ 137 (166)
T 3q72_A 66 PGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSRE-VSVDEGRACAVV-------FD 137 (166)
T ss_dssp -------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCC-SCHHHHHHHHHH-------TT
T ss_pred hhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccc-cCHHHHHHHHHH-------hC
Confidence 9999999999999999886422 2333445555443 689999999999975431 112222222222 23
Q ss_pred ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 244 FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 244 ~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
++++++||++|. |+.++++.+.+.+
T Consensus 138 ~~~~~~Sa~~~~----------gi~~l~~~l~~~~ 162 (166)
T 3q72_A 138 CKFIETSAALHH----------NVQALFEGVVRQI 162 (166)
T ss_dssp CEEEECBGGGTB----------SHHHHHHHHHHHH
T ss_pred CcEEEeccCCCC----------CHHHHHHHHHHHH
Confidence 589999999999 9999999998764
No 106
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.76 E-value=7.6e-19 Score=168.95 Aligned_cols=164 Identities=16% Similarity=0.130 Sum_probs=105.4
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
....+|+++|+.|+|||||+++|+..........+. +... .....+......++||||||+.+|.
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~ 70 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV--------------FDNF-SANVVVNGATVNLGLWDTAGQEDYN 70 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC------------------------C-BCCCC-------CEEECCCC-CTTT
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCee--------------eeeE-EEEEEECCEEEEEEEEECCCChhhh
Confidence 356889999999999999999999765432222211 1111 1112233345678899999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchhhH--HHHHHHHHc--CCEEEEEEeecCCCCCCcc---------cchhhHHHHHH
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQTR--FVLKKALEF--GHAVVVVVNKIDRPSARPD---------YVINSTFELFI 233 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~qt~--~~l~~~~~~--gip~ivviNKiD~~~~~~~---------~~~~ei~~~~~ 233 (681)
..+..+++.+|++|+|+|+++....+.. .++..+... ++|+++|+||+|+.+.+.. ...++...+..
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~ 150 (182)
T 3bwd_D 71 RLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKK 150 (182)
T ss_dssp TTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHH
T ss_pred hhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHH
Confidence 8888899999999999999874332222 244444443 7999999999998654311 01223333333
Q ss_pred HhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 234 ELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 234 ~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
.++. .+++++||++|. |+.++++.+.+.+..|
T Consensus 151 ~~~~------~~~~~~Sa~~~~----------gi~~l~~~l~~~i~~~ 182 (182)
T 3bwd_D 151 LIGA------PAYIECSSKSQE----------NVKGVFDAAIRVVLQP 182 (182)
T ss_dssp HHTC------SEEEECCTTTCT----------THHHHHHHHHHHHSCC
T ss_pred HcCC------CEEEEEECCCCC----------CHHHHHHHHHHHHhcC
Confidence 2221 379999999999 9999999999877544
No 107
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.76 E-value=1.5e-18 Score=178.25 Aligned_cols=151 Identities=21% Similarity=0.305 Sum_probs=115.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH--
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG-- 167 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~-- 167 (681)
++|+++|++|+|||||+++|++...... ...|+|+......+.+++..++||||||+.+|..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~----------------~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~ 65 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVG----------------NWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANA 65 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEE----------------ECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC---
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCcc----------------CCCCceEEEEEEEEEECCeEEEEEeCCCcccccccc
Confidence 6899999999999999999987532111 1127888888888999999999999999988864
Q ss_pred --------HHHHHH--hhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhc
Q 005713 168 --------EVERIL--NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNA 237 (681)
Q Consensus 168 --------e~~~~l--~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~ 237 (681)
....++ ..+|++|+|+|++. ......++..+.+.++|+++|+||+|+...+. ....+..+...+
T Consensus 66 ~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~--~~~~~~~l~~~l-- 139 (256)
T 3iby_A 66 EGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAEHRG--ISIDTEKLESLL-- 139 (256)
T ss_dssp ---CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHHHTT--CEECHHHHHHHH--
T ss_pred cCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCCcCC--cHHHHHHHHHHc--
Confidence 234455 78999999999987 45556677778888999999999999864321 111222222222
Q ss_pred ccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 238 TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 238 ~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
.+|++++||++|. |+.+|++.+.+.
T Consensus 140 -----g~~vi~~SA~~g~----------gi~el~~~i~~~ 164 (256)
T 3iby_A 140 -----GCSVIPIQAHKNI----------GIPALQQSLLHC 164 (256)
T ss_dssp -----CSCEEECBGGGTB----------SHHHHHHHHHTC
T ss_pred -----CCCEEEEECCCCC----------CHHHHHHHHHhh
Confidence 3589999999999 999999999876
No 108
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.75 E-value=4.1e-18 Score=165.81 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=113.5
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
.+..+|+++|+.|+|||||+++|+......... ..|+......+.+++..+.||||||+.+|.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~-----------------~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI-----------------LPTIGFSIEKFKSSSLSFTVFDMSGQGRYR 81 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC-----------------CCCSSEEEEEEECSSCEEEEEEECCSTTTG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCc-----------------CCccceeEEEEEECCEEEEEEECCCCHHHH
Confidence 356899999999999999999998764211111 112222334566778999999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCC-chhhHHHHHHHHH------cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccc
Q 005713 167 GEVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE------FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~------~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~ 239 (681)
..+..+++.+|++|+|+|+++.. ......++..+.. .++|+++|+||+|+.... ..+++.+.+. +. .-
T Consensus 82 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~-~~-~~ 156 (190)
T 2h57_A 82 NLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAV---TSVKVSQLLC-LE-NI 156 (190)
T ss_dssp GGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCC---CHHHHHHHHT-GG-GC
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCC---CHHHHHHHhC-hh-hc
Confidence 88889999999999999998743 2233344444443 478999999999997532 2233433331 11 00
Q ss_pred ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 240 ~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
....++++++||++|. |+.++++.|.+.+.
T Consensus 157 ~~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 157 KDKPWHICASDAIKGE----------GLQEGVDWLQDQIQ 186 (190)
T ss_dssp CSSCEEEEECBTTTTB----------THHHHHHHHHHHC-
T ss_pred cCCceEEEEccCCCCc----------CHHHHHHHHHHHHH
Confidence 1235789999999999 99999999988764
No 109
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=1.2e-17 Score=163.01 Aligned_cols=161 Identities=16% Similarity=0.104 Sum_probs=112.1
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
....+|+++|+.++|||||+++|+..........+. +.+.. ....+......+.||||||+.+|.
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~ 70 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTI--------------EDTYR-QVISCDKSVCTLQITDTTGSHQFP 70 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCC--------------CEEEE-EEEEETTEEEEEEEEECCGGGSCH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcc--------------cccee-EEEEECCEEEEEEEEeCCChHHhH
Confidence 456899999999999999999999865432221111 11111 122233334689999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH-----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE-----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~-----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
.....+++.+|++|+|+|+++... .....++..+.. .++|+++|+||+|+.... ....+...+...+
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~----- 143 (199)
T 2gf0_A 71 AMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE--VDTREAQAVAQEW----- 143 (199)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS--SCHHHHHHHHHHH-----
T ss_pred HHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccc--cCHHHHHHHHHHh-----
Confidence 999999999999999999886322 222334433333 368999999999987532 1122333332222
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
.++++++||++|. |+.++++.|.+.+...
T Consensus 144 --~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 144 --KCAFMETSAKMNY----------NVKELFQELLTLETRR 172 (199)
T ss_dssp --TCEEEECBTTTTB----------SHHHHHHHHHHHCSSS
T ss_pred --CCeEEEEecCCCC----------CHHHHHHHHHHHHhhh
Confidence 3579999999999 9999999999987654
No 110
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.75 E-value=3.9e-18 Score=166.61 Aligned_cols=159 Identities=19% Similarity=0.203 Sum_probs=112.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
+..+|+++|++|+|||||+++|+....... ..|+......+.+++..+++|||||+.+|..
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~-------------------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 82 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATL-------------------QPTWHPTSEELAIGNIKFTTFDLGGHIQARR 82 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCC-------------------CCCCSCEEEEEEETTEEEEEEECCCSGGGTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcc-------------------ccCCCCCeEEEEECCEEEEEEECCCCHHHHH
Confidence 356899999999999999999997653211 1122222345677889999999999999988
Q ss_pred HHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcc----
Q 005713 168 EVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT---- 238 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~---- 238 (681)
.+..+++.+|++|+|+|+++... .....++..+.. .+.|+++|+||+|+.... ..+++.+.+......
T Consensus 83 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~ 159 (190)
T 1m2o_B 83 LWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV---SEAELRSALGLLNTTGSQR 159 (190)
T ss_dssp SGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTCSSCCC---
T ss_pred HHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCC---CHHHHHHHhCCcccccccc
Confidence 88888999999999999987543 233344444432 478999999999987521 233344333211100
Q ss_pred -cccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 239 -DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 239 -~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.....++++++||++|. |+.++++.|.+++
T Consensus 160 ~~~~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~l 190 (190)
T 1m2o_B 160 IEGQRPVEVFMCSVVMRN----------GYLEAFQWLSQYI 190 (190)
T ss_dssp CCSSCCEEEEECBTTTTB----------SHHHHHHHHHTTC
T ss_pred ccccceEEEEEeECCcCC----------CHHHHHHHHHhhC
Confidence 11235689999999999 9999999998653
No 111
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.75 E-value=2.6e-18 Score=169.12 Aligned_cols=159 Identities=18% Similarity=0.237 Sum_probs=108.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
+..+|+++|++|+|||||+++|....... . ..|+......+.+++..+++|||||+.+|..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~------------------~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 84 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-H------------------VPTLHPTSEELTIAGMTFTTFDLGGHIQARR 84 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------------------------CCCCCSCEEEEETTEEEEEEEECC----CC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCc-c------------------CCCCCceeEEEEECCEEEEEEECCCcHhhHH
Confidence 45789999999999999999997643211 0 0122222345667789999999999999988
Q ss_pred HHHHHHhhcceEEEEeeCCCCC-chhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhc-----
Q 005713 168 EVERILNMVEGVLLVVDSVEGP-MPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNA----- 237 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~-~~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~----- 237 (681)
.+..+++.+|++|+|+|+++.. ......++..+.. .++|+++|+||+|+..+ ...+++.+.+.....
T Consensus 85 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~ 161 (198)
T 1f6b_A 85 VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA---ISEERLREMFGLYGQTTGKG 161 (198)
T ss_dssp GGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC---CCHHHHHHHHTCTTTCCCSS
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcccc---CCHHHHHHHhCccccccccc
Confidence 8888899999999999998753 2333444444433 47999999999999752 223444444332110
Q ss_pred -----ccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 238 -----TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 238 -----~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
......++++++||++|. |+.++++.|.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~SA~~g~----------gv~~l~~~l~~~l 197 (198)
T 1f6b_A 162 SVSLKELNARPLEVFMCSVLKRQ----------GYGEGFRWMAQYI 197 (198)
T ss_dssp CCCTTTCCSCCEEEEECBTTTTB----------SHHHHHHHHHTTC
T ss_pred ccccccccCceEEEEEEECCCCC----------CHHHHHHHHHHhc
Confidence 001235689999999999 9999999998764
No 112
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.75 E-value=2.1e-18 Score=166.20 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=111.3
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
..+|+++|++|+|||||+++|+..........+. +... .....+......+.||||||+.+|...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 69 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDNY-SANVMVDGKPVNLGLWDTAGQEDYDRL 69 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCS--------------CCEE-EEEEEETTEEEEEEEECCCCSGGGTTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcc--------------ccee-EEEEEECCEEEEEEEEECCCCHhHHHH
Confidence 5789999999999999999999765432222221 1111 112223333467889999999999888
Q ss_pred HHHHHhhcceEEEEeeCCCCCchhhH--HHHHHHHHc--CCEEEEEEeecCCCCCCc-----------ccchhhHHHHHH
Q 005713 169 VERILNMVEGVLLVVDSVEGPMPQTR--FVLKKALEF--GHAVVVVVNKIDRPSARP-----------DYVINSTFELFI 233 (681)
Q Consensus 169 ~~~~l~~aD~~llVvDa~~g~~~qt~--~~l~~~~~~--gip~ivviNKiD~~~~~~-----------~~~~~ei~~~~~ 233 (681)
...+++.+|++|+|+|+++....+.. .++..+... ++|+++|+||+|+..... .-..++...+..
T Consensus 70 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 149 (186)
T 1mh1_A 70 RPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK 149 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHH
Confidence 88889999999999999875433332 344555544 799999999999865321 001111222222
Q ss_pred HhhcccccCC-ceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCc
Q 005713 234 ELNATDEQCD-FQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPR 282 (681)
Q Consensus 234 ~l~~~~~~~~-~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 282 (681)
. .. .+++++||++|. |+.++++.+.+.+..+.
T Consensus 150 ~-------~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 150 E-------IGAVKYLECSALTQR----------GLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp H-------TTCSEEEECCTTTCT----------THHHHHHHHHHHHSCCC
T ss_pred h-------cCCcEEEEecCCCcc----------CHHHHHHHHHHHHhccc
Confidence 2 23 389999999999 99999999999886653
No 113
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.75 E-value=1.9e-18 Score=170.19 Aligned_cols=162 Identities=20% Similarity=0.228 Sum_probs=108.5
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
.+...+|+|+|+.++|||||+++|+..........+. |.+.......+......+.||||||+.+|
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~--------------~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 87 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTI--------------GVEFGSRVVNVGGKTVKLQIWDTAGQERF 87 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC--------------------------CCEEEEEEEETTEEEEEEEECCTTHHHH
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcc--------------cceeEEEEEEECCeeeEEEEEcCCCcHhH
Confidence 3457899999999999999999998764432221111 22333333323223378999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCchhh-HHHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPMPQT-RFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~~qt-~~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
...+..+++.+|++|+|+|+++....+. ..++..+.. .++|+++|+||+|+...+. ....+...+...
T Consensus 88 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~~~~------- 159 (200)
T 2o52_A 88 RSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPERE-VTFLEASRFAQE------- 159 (200)
T ss_dssp SCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCC-SCHHHHHHHHHH-------
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccc-cCHHHHHHHHHH-------
Confidence 8888899999999999999987533222 334444433 3789999999999864321 112233333322
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
..++++++||++|. |+..+++.|.+.+.
T Consensus 160 ~~~~~~~~SA~~g~----------gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 160 NELMFLETSALTGE----------NVEEAFLKCARTIL 187 (200)
T ss_dssp TTCEEEEECTTTCT----------THHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 24689999999999 89999999887653
No 114
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.75 E-value=1.7e-18 Score=179.81 Aligned_cols=156 Identities=19% Similarity=0.262 Sum_probs=117.3
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH-
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG- 167 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~- 167 (681)
..+|+++|++|+|||||+++|++...... ...|+|+......+.+.+..+.||||||+.+|..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~----------------~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 66 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVG----------------NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTI 66 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEE----------------ECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC-
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccC----------------CCCCeeEEEEEEEEEeCCCceEEEECcCCCccccc
Confidence 46899999999999999999987642111 1237788888888888899999999999988762
Q ss_pred ---------HHHHH--HhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhh
Q 005713 168 ---------EVERI--LNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN 236 (681)
Q Consensus 168 ---------e~~~~--l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~ 236 (681)
....+ ...+|++|+|+|+++ ......++..+.+.++|+++|+||+|+...+. ....+..+...+
T Consensus 67 ~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~--~~~~~~~l~~~l- 141 (274)
T 3i8s_A 67 SSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQN--IRIEIDALSARL- 141 (274)
T ss_dssp ---CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHHHTT--EEECHHHHHHHH-
T ss_pred cccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchhhhh--HHHHHHHHHHhc-
Confidence 11222 268999999999987 45566677788888999999999999854321 111222222222
Q ss_pred cccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 237 ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 237 ~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
.+|++++||++|. |+.+|++.|.+.++..
T Consensus 142 ------g~~~i~~SA~~g~----------gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 142 ------GCPVIPLVSTRGR----------GIEALKLAIDRYKANE 170 (274)
T ss_dssp ------TSCEEECCCGGGH----------HHHHHHHHHHTCCCCC
T ss_pred ------CCCEEEEEcCCCC----------CHHHHHHHHHHHHhcC
Confidence 3589999999999 9999999999887643
No 115
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.75 E-value=5.2e-18 Score=163.08 Aligned_cols=152 Identities=18% Similarity=0.194 Sum_probs=108.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
-.+|+++|.+|+|||||+++|++........ ..|+|.......+.+++..+.+|||||+.++...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 68 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTD---------------IAGTTRDVLREHIHIDGMPLHIIDTAGLREASDE 68 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCS---------------STTCCCSCEEEEEEETTEEEEEEECCCCSCCSSH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeC---------------CCCceeceeeEEEEECCeEEEEEECCCcccchhH
Confidence 3679999999999999999998764321111 1144444444556777888999999999764322
Q ss_pred --------HHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHc---CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhc
Q 005713 169 --------VERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNA 237 (681)
Q Consensus 169 --------~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~---gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~ 237 (681)
...+++.+|++|+|+|+++........++..+... ++|+++|+||+|+.+...+.
T Consensus 69 ~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~-------------- 134 (172)
T 2gj8_A 69 VERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM-------------- 134 (172)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEE--------------
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhhh--------------
Confidence 22457899999999999886655555666655543 68999999999985432110
Q ss_pred ccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 238 TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 238 ~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
......+++++||++|. |+.++++.|.+.+..
T Consensus 135 -~~~~~~~~~~~SA~~g~----------gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 135 -SEVNGHALIRLSARTGE----------GVDVLRNHLKQSMGF 166 (172)
T ss_dssp -EEETTEEEEECCTTTCT----------THHHHHHHHHHHC--
T ss_pred -hhccCCceEEEeCCCCC----------CHHHHHHHHHHHhhh
Confidence 01124579999999999 999999999988754
No 116
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.75 E-value=1.8e-18 Score=182.07 Aligned_cols=159 Identities=23% Similarity=0.258 Sum_probs=114.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCcc-c--
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS-D-- 164 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~-d-- 164 (681)
+..+|+|+|++|+|||||+++|++......... .++|.......+.+++..+++|||||+. .
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~---------------~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~ 71 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRK---------------AQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK 71 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCC---------------SSCCSSCEEEEEEETTEEEEEESSSSCCHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCC---------------CCcceeeEEEEEEECCeeEEEEECcCCCccch
Confidence 346899999999999999999998654321110 0222222223466788999999999997 3
Q ss_pred ------hhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcc
Q 005713 165 ------FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT 238 (681)
Q Consensus 165 ------f~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~ 238 (681)
|...+..+++.+|++++|+|+.+ +..++..+++.+...+.|+++|+||+|+... ... +.+.+.++..
T Consensus 72 ~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~-~~~----~~~~l~~l~~- 144 (301)
T 1ega_A 72 RAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQE-KAD----LLPHLQFLAS- 144 (301)
T ss_dssp HHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCC-HHH----HHHHHHHHHT-
T ss_pred hhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCcc-HHH----HHHHHHHHHH-
Confidence 33333456778999999999988 8888888888887778999999999998752 112 2222222211
Q ss_pred cccCCc-eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 239 DEQCDF-QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 239 ~~~~~~-pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
...+ +++++||++|. ++..|++.+...+|.
T Consensus 145 --~~~~~~~i~iSA~~g~----------~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 145 --QMNFLDIVPISAETGL----------NVDTIAAIVRKHLPE 175 (301)
T ss_dssp --TSCCSEEEECCTTTTT----------THHHHHHHHHTTCCB
T ss_pred --hcCcCceEEEECCCCC----------CHHHHHHHHHHhCCc
Confidence 1223 68999999998 999999999998864
No 117
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.75 E-value=5.9e-18 Score=163.83 Aligned_cols=159 Identities=21% Similarity=0.260 Sum_probs=113.7
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
.+..+|+++|+.|+|||||+++|++.. ......+ .|.+ ...+.+++..++||||||+.+|.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t--------------~~~~----~~~~~~~~~~~~~~Dt~G~~~~~ 76 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPT--------------LGFN----IKTLEHRGFKLNIWDVGGQKSLR 76 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCC--------------SSEE----EEEEEETTEEEEEEEECCSHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCccccc--------------Cccc----eEEEEECCEEEEEEECCCCHhHH
Confidence 356899999999999999999998754 1111111 1222 23455678999999999999998
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
..+..+++.+|++|+|+|+++... .....++..+.. .+.|+++|+||+|+..... .+++.+.+.. . ....
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~-~-~~~~ 151 (186)
T 1ksh_A 77 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS---CNAIQEALEL-D-SIRS 151 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHTTG-G-GCCS
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC---HHHHHHHhCh-h-hccC
Confidence 888888999999999999987542 333345555443 3789999999999976421 2333332211 0 0112
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
..++++++||++|. |+.++++.+.+.++
T Consensus 152 ~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 152 HHWRIQGCSAVTGE----------DLLPGIDWLLDDIS 179 (186)
T ss_dssp SCEEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred CceEEEEeeCCCCC----------CHHHHHHHHHHHHH
Confidence 45789999999998 99999999988764
No 118
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.75 E-value=2e-17 Score=160.10 Aligned_cols=159 Identities=19% Similarity=0.217 Sum_probs=112.8
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
....+|+++|++|+|||||+++|++..... . ....|.+ ...+.+++..+.+|||||+.+|.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~-----~----------~~t~g~~----~~~~~~~~~~l~i~Dt~G~~~~~ 74 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISH-----I----------TPTQGFN----IKSVQSQGFKLNVWDIGGQRKIR 74 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEE-----E----------EEETTEE----EEEEEETTEEEEEEECSSCGGGH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc-----c----------cCcCCeE----EEEEEECCEEEEEEECCCCHHHH
Confidence 456899999999999999999997652210 0 0011322 23456678999999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcc-cc
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT-DE 240 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~-~~ 240 (681)
..+..+++.+|++++|+|+++... .....++..+.. .++|+++|+||+|+..... .+++.+.+ +.. ..
T Consensus 75 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~---~~~~~~~~---~~~~~~ 148 (181)
T 1fzq_A 75 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP---ASEIAEGL---NLHTIR 148 (181)
T ss_dssp HHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC---HHHHHHHT---TGGGCC
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC---HHHHHHHh---Cchhcc
Confidence 999999999999999999987532 223344444432 4689999999999976532 22333222 111 11
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
...++++++||++|. |+.++++.+.+.+..
T Consensus 149 ~~~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 149 DRVWQIQSCSALTGE----------GVQDGMNWVCKNVNA 178 (181)
T ss_dssp SSCEEEEECCTTTCT----------THHHHHHHHHHTC--
T ss_pred CCceEEEEccCCCCC----------CHHHHHHHHHHHHHh
Confidence 235689999999999 999999999987753
No 119
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.74 E-value=3.5e-18 Score=170.35 Aligned_cols=162 Identities=13% Similarity=0.126 Sum_probs=114.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
...+|+++|..++|||||+++|+..........+. +.+. .....+....+.+.||||||+.+|..
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~ 90 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV--------------FENY-TACLETEEQRVELSLWDTSGSPYYDN 90 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCS--------------EEEE-EEEEEC--CEEEEEEEEECCSGGGTT
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCee--------------eeeE-EEEEEECCEEEEEEEEECCCCHhHHH
Confidence 46889999999999999999999876543322222 2222 22233445567899999999999998
Q ss_pred HHHHHHhhcceEEEEeeCCCCCchhh--HHHHHHHHHc--CCEEEEEEeecCCCCCC-----------cccchhhHHHHH
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMPQT--RFVLKKALEF--GHAVVVVVNKIDRPSAR-----------PDYVINSTFELF 232 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~qt--~~~l~~~~~~--gip~ivviNKiD~~~~~-----------~~~~~~ei~~~~ 232 (681)
.+..+++.+|++|+|+|+++...... ..++..+... ++|+++|+||+|+.... .....++...+.
T Consensus 91 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 170 (214)
T 3q3j_B 91 VRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIA 170 (214)
T ss_dssp TGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred HHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHH
Confidence 88889999999999999987543332 3445555554 78999999999986421 112223333333
Q ss_pred HHhhcccccCCc-eEEEeecccCCCCCCCCCCCCC-cchhHHHHHhhCCCC
Q 005713 233 IELNATDEQCDF-QAIYASGIQGKAGLSPDNLADD-LGPLFESIMRCIPGP 281 (681)
Q Consensus 233 ~~l~~~~~~~~~-pvi~~SA~~G~~~~~~~~~~~g-i~~Ll~~I~~~lp~p 281 (681)
..+ .+ +++++||++|. | +..+|+.+.+.+...
T Consensus 171 ~~~-------~~~~~~e~SA~~g~----------g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 171 KQL-------GAEIYLEGSAFTSE----------KSIHSIFRTASMLCLNK 204 (214)
T ss_dssp HHH-------TCSEEEECCTTTCH----------HHHHHHHHHHHHHHHC-
T ss_pred HHc-------CCCEEEEeccCCCc----------ccHHHHHHHHHHHHhcc
Confidence 333 34 79999999998 8 999999998876443
No 120
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.74 E-value=1.8e-17 Score=162.10 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=108.7
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
.+..+|+++|+.|+|||||+++|+...... . ..|+......+.+++..++||||||+.+|.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~------------------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 87 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-T------------------IPTIGFNVETVEYKNICFTVWDVGGQDKIR 87 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-E------------------EEETTEEEEEEEETTEEEEEEECC-----C
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-c------------------CCcCceeEEEEEECCEEEEEEECCCCHhHH
Confidence 346789999999999999999997643321 0 011122234566788999999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcc-cc
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT-DE 240 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~-~~ 240 (681)
..+..+++.+|++|+|+|+++... .....++..+.. .++|+++|+||+|+.... ..+++.+. ++.. ..
T Consensus 88 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~---~~~~~~~ 161 (192)
T 2b6h_A 88 PLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM---PVSELTDK---LGLQHLR 161 (192)
T ss_dssp TTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHH---TTGGGCS
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC---CHHHHHHH---hCccccc
Confidence 999999999999999999987532 233344444433 378999999999986542 12233322 2211 11
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
...++++++||++|. |+.++++.|.+.+.
T Consensus 162 ~~~~~~~~~SA~~g~----------gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 162 SRTWYVQATCATQGT----------GLYDGLDWLSHELS 190 (192)
T ss_dssp SCCEEEEECBTTTTB----------THHHHHHHHHHHTT
T ss_pred CCceEEEECcCCCcC----------CHHHHHHHHHHHHh
Confidence 235789999999999 99999999988764
No 121
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=164.37 Aligned_cols=164 Identities=17% Similarity=0.165 Sum_probs=110.2
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
.....+|+++|.+|+|||||+++|++..+.+....+. +.+.......+......+.||||||+.++
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~ 85 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPEN--------------PEDTYERRIMVDKEEVTLVVYDIWEQGDA 85 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTS--------------CTTEEEEEEEETTEEEEEEEECCCCCSGG
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCc--------------ccceEEEEEEECCEEEEEEEEecCCCccc
Confidence 3456899999999999999999997543332211111 22222222223333467889999999988
Q ss_pred hH-HHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccc
Q 005713 166 GG-EVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (681)
Q Consensus 166 ~~-e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~ 239 (681)
.. ....+++.+|++|+|+|+++... .....++..+.. .++|+++|+||+|+...+. ...++...+....
T Consensus 86 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~a~~~---- 160 (195)
T 3cbq_A 86 GGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSRE-VSLEEGRHLAGTL---- 160 (195)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCC-SCHHHHHHHHHHT----
T ss_pred hhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCC-cCHHHHHHHHHHh----
Confidence 75 56677899999999999986322 223344444443 3789999999999975431 1223333333222
Q ss_pred ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 240 ~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
.++++++||++|. |+.++|+.+++.+...
T Consensus 161 ---~~~~~e~Sa~~~~----------~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 161 ---SCKHIETSAALHH----------NTRELFEGAVRQIRLR 189 (195)
T ss_dssp ---TCEEEEEBTTTTB----------SHHHHHHHHHHHHHTT
T ss_pred ---CCEEEEEcCCCCC----------CHHHHHHHHHHHHHHh
Confidence 3579999999999 9999999999887544
No 122
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.74 E-value=2.2e-18 Score=169.41 Aligned_cols=158 Identities=18% Similarity=0.168 Sum_probs=84.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhh--cCccccccceeeeeeccchhhcccceeEEeeeeEEeeC----CeEEEEEeCCC
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQ--AKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN----DTKINIIDTPG 161 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~--~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~----~~~i~iiDTPG 161 (681)
...+|+++|+.|+|||||+++|+.. ........+. |+ +.....+.++ ...+.||||||
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~--------------~~--~~~~~~~~~~~~~~~~~~~l~Dt~G 82 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTS--------------GV--EVVVAPVTIPDTTVSVELFLLDTAG 82 (208)
T ss_dssp EEEEEEEC--------------------------------------------------CEEEECTTSSEEEEEEEEETTT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCcc--------------ce--EEEEEEEEECCcccEEEEEEEECCC
Confidence 4578999999999999999999876 3221111111 22 2233344444 46899999999
Q ss_pred ccchhHHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH------cCCEEEEEEeecCCCC-CCcccchhhHHHHHH
Q 005713 162 HSDFGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE------FGHAVVVVVNKIDRPS-ARPDYVINSTFELFI 233 (681)
Q Consensus 162 h~df~~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~------~gip~ivviNKiD~~~-~~~~~~~~ei~~~~~ 233 (681)
+.+|...+..+++.+|++|+|+|+++... .....++..+.. .++|+++|+||+|+.. .+ ....+++.++..
T Consensus 83 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~-~v~~~~~~~~~~ 161 (208)
T 2yc2_C 83 SDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRH-QVRLDMAQDWAT 161 (208)
T ss_dssp THHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC--------CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhc-cCCHHHHHHHHH
Confidence 99999988889999999999999987543 233445555554 4789999999999975 22 122344445444
Q ss_pred HhhcccccCCceEEEeeccc-CCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 234 ELNATDEQCDFQAIYASGIQ-GKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 234 ~l~~~~~~~~~pvi~~SA~~-G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.+ .++++++||++ |. |+..+++.|.+.+.
T Consensus 162 ~~-------~~~~~~~Sa~~~~~----------gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 162 TN-------TLDFFDVSANPPGK----------DADAPFLSIATTFY 191 (208)
T ss_dssp HT-------TCEEEECCC-----------------CHHHHHHHHHHH
T ss_pred Hc-------CCEEEEeccCCCCc----------CHHHHHHHHHHHHH
Confidence 33 35899999999 98 89999999887653
No 123
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.74 E-value=4.8e-18 Score=174.78 Aligned_cols=155 Identities=26% Similarity=0.400 Sum_probs=117.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
+..+|+++|++|+|||||+++|++...... ...|+|+......+.+++..+.||||||+.+|..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~----------------~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~ 67 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVA----------------NWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGY 67 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEE----------------ECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCccc----------------CCCCceEEEEEEEEEECCeEEEEEECCCcCccCC
Confidence 457899999999999999999987532110 1137888888888899899999999999988763
Q ss_pred ------HHHHHH--hhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccc
Q 005713 168 ------EVERIL--NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (681)
Q Consensus 168 ------e~~~~l--~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~ 239 (681)
....++ ..+|++++|+|++.. .....++..+.+.++|+++|+||+|+...+. +..++..+...+
T Consensus 68 ~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~--i~~~~~~l~~~l---- 139 (258)
T 3a1s_A 68 SSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKTG--MKIDRYELQKHL---- 139 (258)
T ss_dssp SSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTT--CCBCHHHHHHHH----
T ss_pred CCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCccc--hHHHHHHHHHHc----
Confidence 223444 479999999999873 3445677777888999999999999753221 112233333333
Q ss_pred ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 240 ~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.+|++++||++|. |+.+|++.+.+.+.
T Consensus 140 ---g~~vi~~SA~~g~----------gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 140 ---GIPVVFTSSVTGE----------GLEELKEKIVEYAQ 166 (258)
T ss_dssp ---CSCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred ---CCCEEEEEeeCCc----------CHHHHHHHHHHHhh
Confidence 3589999999999 99999999988764
No 124
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.74 E-value=4.7e-18 Score=174.51 Aligned_cols=167 Identities=14% Similarity=0.108 Sum_probs=116.3
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
....+|+|+|++|+|||||+++|++.......... +++|.......+.|.+..++||||||+.++.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~--------------~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~ 85 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGS--------------QTLTKTCSKSQGSWGNREIVIIDTPDMFSWK 85 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTS--------------CCCCCSCEEEEEEETTEEEEEEECCGGGGSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCC--------------CceeeeeEEEEEEeCCCEEEEEECcCCCCCC
Confidence 35689999999999999999999986533221111 1356666666778899999999999998764
Q ss_pred H-----------HHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHc-----CCEEEEEEe-ecCCCCCCcccch----
Q 005713 167 G-----------EVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF-----GHAVVVVVN-KIDRPSARPDYVI---- 225 (681)
Q Consensus 167 ~-----------e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~-----gip~ivviN-KiD~~~~~~~~~~---- 225 (681)
. .+..+++.+|++|+|+|+.. +..+...++..+.+. +.|+++|+| |+|+...+....+
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~ 164 (260)
T 2xtp_A 86 DHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSD 164 (260)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcc
Confidence 2 22336678999999999985 667777777777765 667777777 9999754432211
Q ss_pred -hhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 226 -NSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 226 -~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
.++......++.... .+..+++||++|. |+..|++.|.+.++.
T Consensus 165 ~~~~~~~~~~~~~~~~--~~~~~~~SA~~~~----------gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 165 NKALSKLVAACGGRIC--AFNNRAEGSNQDD----------QVKELMDCIEDLLME 208 (260)
T ss_dssp CHHHHHHHHHTTTCEE--ECCTTCCHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCeEE--EecCcccccccHH----------HHHHHHHHHHHHHHh
Confidence 123334433332110 0112789999998 999999999887753
No 125
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.74 E-value=4.2e-18 Score=168.29 Aligned_cols=161 Identities=14% Similarity=0.139 Sum_probs=109.0
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
.+..+|+++|+.|+|||||+++|+..........+. + ........+....+.++||||||+.+|.
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~--------------~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 92 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------F-DNYSANVMVDGKPVNLGLWDTAGLEDYD 92 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCS--------------E-EEEEEEEECC-CEEEEEEEEECCSGGGT
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCee--------------c-ceeEEEEEECCEEEEEEEEECCCchhhH
Confidence 356899999999999999999999765543222221 1 1111122223344667799999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchhhH--HHHHHHHHc--CCEEEEEEeecCCCCCCcc-----------cchhhHHHH
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQTR--FVLKKALEF--GHAVVVVVNKIDRPSARPD-----------YVINSTFEL 231 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~qt~--~~l~~~~~~--gip~ivviNKiD~~~~~~~-----------~~~~ei~~~ 231 (681)
.....+++.+|++|+|+|+++....+.. .++..+... ++|+++|+||+|+...+.. ...++...+
T Consensus 93 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (204)
T 4gzl_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAM 172 (204)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHH
Confidence 8888899999999999999875443333 344555554 7999999999998654310 011122222
Q ss_pred HHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 232 FIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 232 ~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
...++ ..+++++||++|. |+.++++.|.+.+
T Consensus 173 ~~~~~------~~~~~~~SA~~g~----------gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 173 AKEIG------AVKYLECSALTQR----------GLKTVFDEAIRAV 203 (204)
T ss_dssp HHHTT------CSEEEECCTTTCT----------THHHHHHHHHHTT
T ss_pred HHhcC------CcEEEEeeCCCCC----------CHHHHHHHHHHHh
Confidence 22221 2469999999999 9999999998754
No 126
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.74 E-value=3.7e-18 Score=171.02 Aligned_cols=162 Identities=19% Similarity=0.226 Sum_probs=111.1
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCcc
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHS 163 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~ 163 (681)
.+...+|+|+|+.++|||||+++|+..........+. |.+.... .+.+.+ ..+.||||||+.
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~--------------~~~~~~~--~~~~~~~~~~~~i~Dt~G~~ 73 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTI--------------GVEFATR--TLEIEGKRIKAQIWDTAGQE 73 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC--------------------CCSEEEE--EEEETTEEEEEEEECCTTTT
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc--------------cceeEEE--EEEECCEEEEEEEEECCCcc
Confidence 3456899999999999999999999865442222111 3333322 334444 789999999999
Q ss_pred chhHHHHHHHhhcceEEEEeeCCCCCchh-hHHHHHHHHHc---CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccc
Q 005713 164 DFGGEVERILNMVEGVLLVVDSVEGPMPQ-TRFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (681)
Q Consensus 164 df~~e~~~~l~~aD~~llVvDa~~g~~~q-t~~~l~~~~~~---gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~ 239 (681)
+|...+..+++.+|++|+|+|+++....+ ...++..+... ++|+++|+||+|+...+ ....++...+...
T Consensus 74 ~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~----- 147 (223)
T 3cpj_B 74 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLR-AVPTEESKTFAQE----- 147 (223)
T ss_dssp TTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGC-CSCHHHHHHHHHH-----
T ss_pred chhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc-ccCHHHHHHHHHH-----
Confidence 99888888999999999999998754322 23344445443 78999999999986432 1112333333322
Q ss_pred ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 240 ~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
..++++++||++|. |+..+++.|.+.+...
T Consensus 148 --~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 148 --NQLLFTETSALNSE----------NVDKAFEELINTIYQK 177 (223)
T ss_dssp --TTCEEEECCCC-CC----------CHHHHHHHHHHHHTTC
T ss_pred --cCCEEEEEeCCCCC----------CHHHHHHHHHHHHHHH
Confidence 24589999999999 9999999999887543
No 127
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.74 E-value=3.5e-18 Score=169.27 Aligned_cols=165 Identities=15% Similarity=0.123 Sum_probs=112.6
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
....+|+++|+.|+|||||+++|+...+......+. +..+ .....+....+.+.||||||+.+|.
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~ 71 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV--------------FDNF-SANVAVDGQIVNLGLWDTAGQEDYS 71 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSS--------------CCCE-EEEEECSSCEEEEEEECCCCCCCCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCcc--------------ceeE-EEEEEECCEEEEEEEEECCCcHHHH
Confidence 356899999999999999999999765432222221 1111 1112223334689999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchhhH--HHHHHHHHc--CCEEEEEEeecCCCCCCcc-------cchhhHHHHHHHh
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQTR--FVLKKALEF--GHAVVVVVNKIDRPSARPD-------YVINSTFELFIEL 235 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~qt~--~~l~~~~~~--gip~ivviNKiD~~~~~~~-------~~~~ei~~~~~~l 235 (681)
..+..+++.+|++|+|+|+++....... .++..+... ++|+++|+||+|+...+.. ...++...+...+
T Consensus 72 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~ 151 (212)
T 2j0v_A 72 RLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQI 151 (212)
T ss_dssp C--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHc
Confidence 8888899999999999999874332222 344555554 7999999999998654210 0223333333333
Q ss_pred hcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCc
Q 005713 236 NATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPR 282 (681)
Q Consensus 236 ~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 282 (681)
+. .+++++||++|. |+.++++.|.+.+..+.
T Consensus 152 ~~------~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 152 GA------AAYIECSSKTQQ----------NVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp TC------SEEEECCTTTCT----------THHHHHHHHHHHHHCC-
T ss_pred CC------ceEEEccCCCCC----------CHHHHHHHHHHHHhhhh
Confidence 21 379999999999 99999999998876553
No 128
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.73 E-value=1.9e-17 Score=160.69 Aligned_cols=155 Identities=17% Similarity=0.201 Sum_probs=99.3
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC--CeEEEEEeCCCccchh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--DTKINIIDTPGHSDFG 166 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~i~iiDTPGh~df~ 166 (681)
..+|+++|..|+|||||+++|+..........+. +..+ ...+.+. .+.+.||||||+.+|.
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~---~~~~~~~~~~~~~~l~Dt~G~~~~~ 83 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI--------------EDSY---RKQVVIDGETCLLDILDTAGQEEYS 83 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTC--------------CEEE---EEEEEETTEEEEEEEEECCC-----
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCccccCCcc--------------ceEE---EEEEEECCEEEEEEEEECCChHHHH
Confidence 4789999999999999999999765432221111 1111 1223333 3679999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchh-hHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQ-TRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~q-t~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
..+..+++.+|++++|+|+.+....+ ...++..+.. .++|+++|+||+|+.... ...+++.++....
T Consensus 84 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~~------ 155 (190)
T 3con_A 84 AMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRT--VDTKQAHELAKSY------ 155 (190)
T ss_dssp ------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCC--SCHHHHHHHHHHH------
T ss_pred HHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCccc--CCHHHHHHHHHHc------
Confidence 99999999999999999998753322 2233334333 378999999999987521 2234444444333
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.++++++||++|. |+.++++.|.+.+.
T Consensus 156 -~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 182 (190)
T 3con_A 156 -GIPFIETSAKTRQ----------GVEDAFYTLVREIR 182 (190)
T ss_dssp -TCCEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred -CCeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 3479999999998 99999999987653
No 129
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.73 E-value=3.4e-18 Score=170.15 Aligned_cols=163 Identities=20% Similarity=0.174 Sum_probs=108.5
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC-eEEEEEeCCCccc
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND-TKINIIDTPGHSD 164 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-~~i~iiDTPGh~d 164 (681)
.....+|+++|+.|+|||||+++|+..........+ .+.+............ ..++||||||+.+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t--------------~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 73 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNAT--------------VGAVNHPVTFLDDQGNVIKFNVWDTAGQEK 73 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETT--------------TTEEEEEEEEEBTTSCEEEEEEEEECSGGG
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc--------------cceeeEEEEEEeCCCcEEEEEEEecCCchh
Confidence 345689999999999999999999865433111111 1222222222111112 6899999999999
Q ss_pred hhHHHHHHHhhcceEEEEeeCCCCCchhhH-HHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 165 FGGEVERILNMVEGVLLVVDSVEGPMPQTR-FVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 165 f~~e~~~~l~~aD~~llVvDa~~g~~~qt~-~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
|......++..+|++|+|+|++++...+.. .++..+.. .++|+++|+||+|+...+ ....++...+. .
T Consensus 74 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~-------~ 145 (218)
T 4djt_A 74 KAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQ-KISKKLVMEVL-------K 145 (218)
T ss_dssp TSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC-----CCHHHHHHHT-------T
T ss_pred hchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc-ccCHHHHHHHH-------H
Confidence 998888899999999999999986443333 33333333 368999999999986532 11111121211 1
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
...++++++||++|. |+..+++.|.+.+..
T Consensus 146 ~~~~~~~~~Sa~~g~----------gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 146 GKNYEYFEISAKTAH----------NFGLPFLHLARIFTG 175 (218)
T ss_dssp TCCCEEEEEBTTTTB----------TTTHHHHHHHHHHHC
T ss_pred HcCCcEEEEecCCCC----------CHHHHHHHHHHHHhc
Confidence 235689999999999 899999999887644
No 130
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.73 E-value=1.3e-17 Score=161.58 Aligned_cols=157 Identities=18% Similarity=0.256 Sum_probs=115.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh-
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG- 166 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~- 166 (681)
+..+|+++|+.|+|||||+++|++...... ...++|+......+.+++..++||||||+.+|.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 69 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIG----------------NWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTA 69 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEE----------------ECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc----------------CCCCeeccceEEEEEeCCcEEEEEECCCcCcccc
Confidence 457899999999999999999987532110 112566666667778889999999999998884
Q ss_pred -----HHHHHHHh--hcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccc
Q 005713 167 -----GEVERILN--MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (681)
Q Consensus 167 -----~e~~~~l~--~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~ 239 (681)
.....++. .+|++++|+|+.. ......++..+...+.|+++|+||+|+...+ .+..+..++...+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~---- 141 (188)
T 2wjg_A 70 NSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSL--GIEIDVDKLEKIL---- 141 (188)
T ss_dssp SSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHHHT--TCCCCHHHHHHHH----
T ss_pred ccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhccccc--cchHHHHHHHHHh----
Confidence 23444554 4999999999875 3455566777777889999999999985322 1112333333332
Q ss_pred ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 240 ~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
.++++++||++|. |+.++++.+.+.+...
T Consensus 142 ---~~~~~~~Sa~~~~----------~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 142 ---GVKVVPLSAAKKM----------GIEELKKAISIAVKDK 170 (188)
T ss_dssp ---TSCEEECBGGGTB----------SHHHHHHHHHHHHTTC
T ss_pred ---CCCeEEEEecCCC----------CHHHHHHHHHHHHHhc
Confidence 3479999999999 9999999999887643
No 131
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.73 E-value=1.3e-17 Score=163.35 Aligned_cols=164 Identities=14% Similarity=0.123 Sum_probs=107.1
Q ss_pred cCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEe---eCCeEEEEEeCCC
Q 005713 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT---YNDTKINIIDTPG 161 (681)
Q Consensus 85 ~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~---~~~~~i~iiDTPG 161 (681)
...+..+|+++|..++|||||+++|.+..... .+ .+.+.......+. .....++||||||
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~--------------~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G 78 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN---ET--------------LFLESTNKIYKDDISNSSFVNFQIWDFPG 78 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGG---GG--------------GGCCCCCSCEEEEECCTTSCCEEEEECCS
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCc---ce--------------eeeccccceeeeeccCCCeeEEEEEECCC
Confidence 34467899999999999999999877632211 11 1222222333332 3458999999999
Q ss_pred ccchhHHH---HHHHhhcceEEEEeeCCCCCchhhHHHHHHHHH-----cCCEEEEEEeecCCCCCCc-----ccchhhH
Q 005713 162 HSDFGGEV---ERILNMVEGVLLVVDSVEGPMPQTRFVLKKALE-----FGHAVVVVVNKIDRPSARP-----DYVINST 228 (681)
Q Consensus 162 h~df~~e~---~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~-----~gip~ivviNKiD~~~~~~-----~~~~~ei 228 (681)
+.+|.... ..+++.+|++|+|+|+++........+...+.+ .++|+++|+||+|+...+. ..+..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~ 158 (196)
T 3llu_A 79 QMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRA 158 (196)
T ss_dssp SCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred CHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHH
Confidence 99998777 789999999999999998733333333333332 2789999999999865321 0111111
Q ss_pred HHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 229 FELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 229 ~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
...+.... .....++++++||++ . |+.++|+.+++.+
T Consensus 159 ~~~~~~~~--~~~~~~~~~e~Sa~~-~----------~v~~~f~~l~~~l 195 (196)
T 3llu_A 159 NDDLADAG--LEKLHLSFYLTSIYD-H----------SIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHTT--CTTSCEEEEEECTTS-T----------HHHHHHHHHHHHT
T ss_pred HHHHHHhh--hhcCCcceEEEEech-h----------hHHHHHHHHHHHh
Confidence 11111111 113467899999999 8 9999999998764
No 132
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.73 E-value=6.4e-18 Score=174.98 Aligned_cols=155 Identities=18% Similarity=0.260 Sum_probs=117.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
+.++|+++|++|+|||||+++|++...... ...|+|+......+.+++..++||||||+.+|..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~----------------~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 65 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVG----------------NWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTA 65 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEE----------------ECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCS
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccC----------------CCCCeEEEeeEEEEEECCceEEEEeCCCcccccc
Confidence 368999999999999999999987533111 1237788888888999999999999999988865
Q ss_pred ------HHHHHH--hhcceEEEEeeCCCCCchhhHHHHHHHHHcC-CEEEEEEeecCCCCCCcccchhhHHHHHHHhhcc
Q 005713 168 ------EVERIL--NMVEGVLLVVDSVEGPMPQTRFVLKKALEFG-HAVVVVVNKIDRPSARPDYVINSTFELFIELNAT 238 (681)
Q Consensus 168 ------e~~~~l--~~aD~~llVvDa~~g~~~qt~~~l~~~~~~g-ip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~ 238 (681)
....++ ..+|++|+|+|++.+ .+...++..+.+.+ +|+++|+||+|+...+ ....+...+...+
T Consensus 66 ~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~l~~~l--- 138 (271)
T 3k53_A 66 HSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKK--GAKIDIKKMRKEL--- 138 (271)
T ss_dssp SCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHH--TCCCCHHHHHHHH---
T ss_pred CCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCccc--ccHHHHHHHHHHc---
Confidence 344444 579999999999874 46667777888888 9999999999975321 1111122222222
Q ss_pred cccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 239 DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 239 ~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.+|++++||++|. |+..+++.+.+.+.
T Consensus 139 ----g~~~~~~Sa~~g~----------gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 139 ----GVPVIPTNAKKGE----------GVEELKRMIALMAE 165 (271)
T ss_dssp ----SSCEEECBGGGTB----------THHHHHHHHHHHHH
T ss_pred ----CCcEEEEEeCCCC----------CHHHHHHHHHHHHh
Confidence 3589999999999 99999999987653
No 133
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=162.40 Aligned_cols=158 Identities=16% Similarity=0.144 Sum_probs=106.6
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
....+|+++|..|+|||||+++|+...+......+. +.++ .....+....+.+.||||||+.+|.
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~ 83 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNL--------------EDTY-SSEETVDHQPVHLRVMDTADLDTPR 83 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTC--------------CEEE-EEEEEETTEEEEEEEEECCC---CC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCc--------------ccee-eEEEEECCEEEEEEEEECCCCCcch
Confidence 356799999999999999999999876432222222 2222 1222333445788999999999887
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH------cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccc
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE------FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~------~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~ 239 (681)
. +..+++.+|++|+|+|+++... .....++..+.. .++|+++|+||+|+...+ ....++...+...+
T Consensus 84 ~-~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~-~v~~~~~~~~~~~~---- 157 (187)
T 3c5c_A 84 N-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYR-QVTKAEGVALAGRF---- 157 (187)
T ss_dssp C-THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGC-SSCHHHHHHHHHHH----
T ss_pred h-HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcC-ccCHHHHHHHHHHc----
Confidence 6 3678999999999999986422 222334444443 379999999999986432 11223444444333
Q ss_pred ccCCceEEEeec-ccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 240 EQCDFQAIYASG-IQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 240 ~~~~~pvi~~SA-~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.++++++|| ++|. |+..+++.|.+.+
T Consensus 158 ---~~~~~e~Sa~~~g~----------gv~~lf~~l~~~i 184 (187)
T 3c5c_A 158 ---GCLFFEVSACLDFE----------HVQHVFHEAVREA 184 (187)
T ss_dssp ---TCEEEECCSSSCSH----------HHHHHHHHHHHHH
T ss_pred ---CCcEEEEeecCccc----------cHHHHHHHHHHHH
Confidence 357999999 8998 8999999998765
No 134
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.73 E-value=3.9e-17 Score=158.73 Aligned_cols=154 Identities=16% Similarity=0.177 Sum_probs=107.1
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCcc
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHS 163 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~ 163 (681)
.....+|+++|..|+|||||+++|+...+......+ +... . ..+.+.+ +.+.||||||+.
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t---------------~~~~-~--~~~~~~~~~~~l~i~Dt~G~~ 78 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE---------------GGRF-K--KEIVVDGQSYLLLIRDEGGPP 78 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT---------------CEEE-E--EEEEETTEEEEEEEEECSSSC
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC---------------cceE-E--EEEEECCEEEEEEEEECCCCh
Confidence 345689999999999999999999986553222111 1111 1 2333444 678889999999
Q ss_pred chhHHHHHHHhhcceEEEEeeCCCCCchhh-HHHHHHHHH----cCCEEEEEEeecCCCCCCc-ccchhhHHHHHHHhhc
Q 005713 164 DFGGEVERILNMVEGVLLVVDSVEGPMPQT-RFVLKKALE----FGHAVVVVVNKIDRPSARP-DYVINSTFELFIELNA 237 (681)
Q Consensus 164 df~~e~~~~l~~aD~~llVvDa~~g~~~qt-~~~l~~~~~----~gip~ivviNKiD~~~~~~-~~~~~ei~~~~~~l~~ 237 (681)
+|. +++.+|++|+|+|+++....+. ..++..+.. .++|+++|+||+|+..... ....+++..+...++
T Consensus 79 ~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~- 152 (184)
T 3ihw_A 79 ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLK- 152 (184)
T ss_dssp CHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTT-
T ss_pred hhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcC-
Confidence 986 7889999999999987543333 445555554 3689999999999853221 122334444443332
Q ss_pred ccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 238 TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 238 ~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.++++++||++|. |+.++|+.+.+.+
T Consensus 153 -----~~~~~e~Sa~~~~----------gv~~lf~~l~~~i 178 (184)
T 3ihw_A 153 -----RCTYYETCATYGL----------NVERVFQDVAQKV 178 (184)
T ss_dssp -----TCEEEEEBTTTTB----------THHHHHHHHHHHH
T ss_pred -----CCeEEEecCCCCC----------CHHHHHHHHHHHH
Confidence 2579999999999 9999999988754
No 135
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.72 E-value=1.3e-17 Score=184.34 Aligned_cols=154 Identities=22% Similarity=0.327 Sum_probs=111.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCcc------
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS------ 163 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~------ 163 (681)
++|+|+|.+|+|||||+++|++...... +...|+|.+.....+.|.+..++||||||+.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v---------------~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~ 68 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV---------------EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPF 68 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC--------------------------CEEEECTTCSSCCEEEC---------CH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee---------------cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhH
Confidence 6899999999999999999986543211 1123888888888888999999999999985
Q ss_pred --chhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 164 --DFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 164 --df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
.+...+..+++.+|++|+|+|+.++.......++..+...++|+++|+||+|+...+. .. . +.+ .++.
T Consensus 69 ~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~-~~-~---~~~-~lg~---- 138 (436)
T 2hjg_A 69 LAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA-NI-Y---DFY-SLGF---- 138 (436)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC------CC-C---SSG-GGSS----
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh-hH-H---HHH-HcCC----
Confidence 5677778899999999999999999998888888888888999999999999864321 11 1 111 1111
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
-+++++||++|. |+.+|++.+.+.++.
T Consensus 139 --~~~~~iSA~~g~----------gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 139 --GEPYPISGTHGL----------GLGDLLDAVAEHFKN 165 (436)
T ss_dssp --CCCEECBTTTTB----------THHHHHHHHHHTGGG
T ss_pred --CCeEEEeCcCCC----------ChHHHHHHHHHhcCc
Confidence 158999999999 999999999998874
No 136
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.72 E-value=1.9e-17 Score=183.28 Aligned_cols=155 Identities=19% Similarity=0.267 Sum_probs=114.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc-----
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD----- 164 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d----- 164 (681)
++|+|+|.+|+|||||+++|++....+.. ...|+|.+.....+.|.+..++||||||+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~---------------~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~ 66 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVE---------------DEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDI 66 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-----------------------------CCSEEEEEETTEEEEEEECTTTTSSGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceec---------------CCCCCccceeeEEEEECCeEEEEEECCCccccccch
Confidence 57999999999999999999976432211 1237888888888999999999999999764
Q ss_pred ----hhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhH-HHHHHHhhccc
Q 005713 165 ----FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINST-FELFIELNATD 239 (681)
Q Consensus 165 ----f~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei-~~~~~~l~~~~ 239 (681)
+...+..+++.||++|+|+|+..+.......+...++..++|+++|+||+|+... ...++ .+ +..++.
T Consensus 67 ~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~----~~~~~~~~-~~~lg~-- 139 (439)
T 1mky_A 67 ISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE----FEREVKPE-LYSLGF-- 139 (439)
T ss_dssp CCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH----HHHHTHHH-HGGGSS--
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc----cHHHHHHH-HHhcCC--
Confidence 3455677899999999999999998888777777777789999999999997421 11122 22 112221
Q ss_pred ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 240 ~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
.+++++||++|. |+.+|++.+.+.+|.
T Consensus 140 ----~~~~~iSA~~g~----------gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 140 ----GEPIPVSAEHNI----------NLDTMLETIIKKLEE 166 (439)
T ss_dssp ----CSCEECBTTTTB----------SHHHHHHHHHHHHHH
T ss_pred ----CCEEEEeccCCC----------CHHHHHHHHHHhccc
Confidence 157999999999 999999999988863
No 137
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=164.09 Aligned_cols=162 Identities=14% Similarity=0.079 Sum_probs=106.5
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCcc
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHS 163 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~ 163 (681)
.....+|+++|+.|+|||||+++|+..........+. +..+ ...+.+++ +.+.||||||+.
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~--------------~~~~---~~~~~~~~~~~~~~i~Dt~G~~ 79 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA--------------FDNF---SAVVSVDGRPVRLQLCDTAGQD 79 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCS--------------SEEE---EEEEEETTEEEEEEEEECCCST
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcc--------------ccee---EEEEEECCEEEEEEEEECCCCH
Confidence 3457899999999999999999999765332221211 1111 12233444 578899999999
Q ss_pred chhHHHHHHHhhcceEEEEeeCCCCCchhhH--HHHHHHHHc--CCEEEEEEeecCCCCCC-----------cccchhhH
Q 005713 164 DFGGEVERILNMVEGVLLVVDSVEGPMPQTR--FVLKKALEF--GHAVVVVVNKIDRPSAR-----------PDYVINST 228 (681)
Q Consensus 164 df~~e~~~~l~~aD~~llVvDa~~g~~~qt~--~~l~~~~~~--gip~ivviNKiD~~~~~-----------~~~~~~ei 228 (681)
+|...+..+++.+|++|+|+|+++....... .++..+... ++|+++|+||+|+.... .....++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~ 159 (201)
T 2q3h_A 80 EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAA 159 (201)
T ss_dssp TCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHH
T ss_pred HHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHH
Confidence 9988888889999999999999875333332 344444443 79999999999986531 01112223
Q ss_pred HHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 229 FELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 229 ~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
..+...++ ..+++++||++|. |+..+++.|.+.+..
T Consensus 160 ~~~~~~~~------~~~~~~~Sa~~g~----------gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 160 KLLAEEIK------AASYIECSALTQK----------NLKEVFDAAIVAGIQ 195 (201)
T ss_dssp HHHHHHHT------CSEEEECCTTTCT----------THHHHHHHHHHHHHH
T ss_pred HHHHHhcC------CcEEEEEecCCCC----------CHHHHHHHHHHHHhc
Confidence 33332222 1379999999999 999999999887643
No 138
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.72 E-value=7.2e-18 Score=162.43 Aligned_cols=159 Identities=20% Similarity=0.222 Sum_probs=109.4
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
.+..+|+++|+.|+|||||+++|+..... .. ..|+......+.+++..+.+|||||+.+|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~------------------~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 76 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVV-TT------------------KPTIGFNVETLSYKNLKLNVWDLGGQTSIR 76 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEE-EE------------------CSSTTCCEEEEEETTEEEEEEEEC----CC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcC-cc------------------CCcCccceEEEEECCEEEEEEECCCCHhHH
Confidence 45789999999999999999999754321 00 011112233456678999999999999998
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
..+..+++.+|++++|+|+++... .....++..+.. .+.|+++|+||+|+.+.. ..+++.+.+.... ...
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~i~~~~~~~~--~~~ 151 (183)
T 1moz_A 77 PYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL---SASEVSKELNLVE--LKD 151 (183)
T ss_dssp TTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC---CHHHHHHHTTTTT--CCS
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC---CHHHHHHHhCccc--ccC
Confidence 888888999999999999987533 333445555543 478999999999987542 1233333221111 112
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
..++++++||++|. |+.++++.|.+.++
T Consensus 152 ~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 152 RSWSIVASSAIKGE----------GITEGLDWLIDVIK 179 (183)
T ss_dssp SCEEEEEEBGGGTB----------THHHHHHHHHHHHH
T ss_pred CceEEEEccCCCCc----------CHHHHHHHHHHHHH
Confidence 35689999999999 99999999987663
No 139
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=1.1e-17 Score=165.38 Aligned_cols=164 Identities=14% Similarity=0.143 Sum_probs=108.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
...+|+++|+.|+|||||+++|+..........+. +.+... ...+......+.||||||+.+|..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~ 88 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV--------------FENYVA-DIEVDGKQVELALWDTAGQEDYDR 88 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC---------------------CCEEEE-EEEETTEEEEEEEEECTTCTTCTT
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcc--------------cceEEE-EEEECCEEEEEEEEECCCcHHHHH
Confidence 35789999999999999999999865432221111 222211 122222336899999999999988
Q ss_pred HHHHHHhhcceEEEEeeCCCCCchhh--HHHHHHHHHc--CCEEEEEEeecCCCCCCc-cc----------chhhHHHHH
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMPQT--RFVLKKALEF--GHAVVVVVNKIDRPSARP-DY----------VINSTFELF 232 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~qt--~~~l~~~~~~--gip~ivviNKiD~~~~~~-~~----------~~~ei~~~~ 232 (681)
.+..+++.+|++|+|+|+++....+. ..++..+... ++|+++|+||+|+..... .+ ..++...+.
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 168 (207)
T 2fv8_A 89 LRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMA 168 (207)
T ss_dssp TGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred HHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHH
Confidence 88888999999999999887432222 3444555544 799999999999864321 00 001111111
Q ss_pred HHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCc
Q 005713 233 IELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPR 282 (681)
Q Consensus 233 ~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~ 282 (681)
..++ ..+++++||++|. |+.++++.|.+.+..+.
T Consensus 169 ~~~~------~~~~~~~SA~~g~----------gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 169 VRIQ------AYDYLECSAKTKE----------GVREVFETATRAALQKR 202 (207)
T ss_dssp HHTT------CSEEEECCTTTCT----------THHHHHHHHHHHHHSCC
T ss_pred HhcC------CCEEEEeeCCCCC----------CHHHHHHHHHHHHHHHh
Confidence 1111 1279999999999 99999999998775443
No 140
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.72 E-value=6.6e-17 Score=162.53 Aligned_cols=164 Identities=13% Similarity=0.086 Sum_probs=108.4
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCcc---
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS--- 163 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~--- 163 (681)
...++|+++|.+|+|||||+++|++....... ..+.|.......+.+++..+.||||||+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~ 90 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQS----------------YSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRA 90 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEEC----------------C-----CEEEEEEEETTEEEEEEECTTTTTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC----------------CCCcceeeeeeeeecCCCeEEEEECCCCcCcc
Confidence 35689999999999999999999875432110 11445555555667788999999999994
Q ss_pred ---ch---hHHHHHHHhhcceEEEEeeCCCCCc---hhhHHHHHHHHHc--CCEEEEEEeecCCCCCCcccchhhHHHHH
Q 005713 164 ---DF---GGEVERILNMVEGVLLVVDSVEGPM---PQTRFVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFELF 232 (681)
Q Consensus 164 ---df---~~e~~~~l~~aD~~llVvDa~~g~~---~qt~~~l~~~~~~--gip~ivviNKiD~~~~~~~~~~~ei~~~~ 232 (681)
.. ...+..++..+|++|+|+|+++... .....++..+... ++|+++|+||+|+...+ .+..+....+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~ 168 (228)
T 2qu8_A 91 FENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMD--SLSIDNKLLI 168 (228)
T ss_dssp GGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC----CCCHHHHHHH
T ss_pred cchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCch--hhHHHHHHHH
Confidence 31 1223345678899999999987643 2344566666665 79999999999997543 1212211222
Q ss_pred HHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 233 IELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 233 ~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
..+... ....++++++||++|. |+.++++.|.+.+.
T Consensus 169 ~~~~~~-~~~~~~~~~~SA~~g~----------gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 169 KQILDN-VKNPIKFSSFSTLTGV----------GVEQAKITACELLK 204 (228)
T ss_dssp HHHHHH-CCSCEEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred HHHHHh-cCCCceEEEEecccCC----------CHHHHHHHHHHHHH
Confidence 222111 0012589999999999 99999999988764
No 141
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.72 E-value=1.4e-17 Score=163.88 Aligned_cols=160 Identities=14% Similarity=0.103 Sum_probs=108.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
...+|+++|+.|+|||||+++|+..........+. +.++. ....+......+.||||||+.+|..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~ 88 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV--------------FENYI-ADIEVDGKQVELALWDTAGQEDYDR 88 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSS--------------CCCCE-EEEEETTEEEEEEEECCCCSGGGTT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcc--------------cceEE-EEEEECCEEEEEEEEECCCchhHHH
Confidence 35789999999999999999999865532222221 11111 1122222336899999999999988
Q ss_pred HHHHHHhhcceEEEEeeCCCCCchhh--HHHHHHHHHc--CCEEEEEEeecCCCCCCcc-----------cchhhHHHHH
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMPQT--RFVLKKALEF--GHAVVVVVNKIDRPSARPD-----------YVINSTFELF 232 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~qt--~~~l~~~~~~--gip~ivviNKiD~~~~~~~-----------~~~~ei~~~~ 232 (681)
....+++.+|++|+|+|+++....+. ..++..+... ++|+++|+||+|+...... -..++...+.
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 168 (201)
T 2gco_A 89 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMA 168 (201)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHH
Confidence 88888999999999999887422222 3444555554 7999999999998754210 0011222222
Q ss_pred HHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 233 IELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 233 ~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
..++ ..+++++||++|. |+.++++.|.+.+
T Consensus 169 ~~~~------~~~~~~~SA~~g~----------gi~~l~~~i~~~~ 198 (201)
T 2gco_A 169 NRIS------AFGYLECSAKTKE----------GVREVFEMATRAG 198 (201)
T ss_dssp HHTT------CSEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred HhCC------CcEEEEeeCCCCC----------CHHHHHHHHHHHH
Confidence 2221 1279999999999 9999999988753
No 142
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=164.10 Aligned_cols=160 Identities=15% Similarity=0.084 Sum_probs=91.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
+..+|+++|+.|+|||||+++|+..........+. +.. ......+......+.||||||+.+|..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~--------------~~~-~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 97 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV--------------FER-YMVNLQVKGKPVHLHIWDTAGQDDYDR 97 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCC--------------CEE-EEEEEEETTEEEEEEEEEC--------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcc--------------cee-EEEEEEECCEEEEEEEEECCCchhhhH
Confidence 45799999999999999999998754322111111 111 111222222345899999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCCchhhH--HHHHHHHHc--CCEEEEEEeecCCCCCCcc-----------cchhhHHHHH
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMPQTR--FVLKKALEF--GHAVVVVVNKIDRPSARPD-----------YVINSTFELF 232 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~qt~--~~l~~~~~~--gip~ivviNKiD~~~~~~~-----------~~~~ei~~~~ 232 (681)
.+..+++.+|++|+|+|+++...-+.. .++..+... ++|+++|+||+|+...+.. ...++...+.
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 177 (214)
T 2j1l_A 98 LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMA 177 (214)
T ss_dssp -------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHH
Confidence 999999999999999999874332222 244444433 7899999999998754210 0111222222
Q ss_pred HHhhcccccCCc-eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 233 IELNATDEQCDF-QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 233 ~~l~~~~~~~~~-pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
..+ .+ +++++||++|. |+.++++.|.+.+.
T Consensus 178 ~~~-------~~~~~~~~SA~~g~----------gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 178 RSV-------GAVAYLECSARLHD----------NVHAVFQEAAEVAL 208 (214)
T ss_dssp HHT-------TCSEEEECBTTTTB----------SHHHHHHHHHHHHH
T ss_pred Hhc-------CCCEEEEecCCCCC----------CHHHHHHHHHHHHH
Confidence 222 33 79999999999 99999999987663
No 143
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.71 E-value=3.4e-19 Score=175.11 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=104.2
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCcc
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHS 163 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~ 163 (681)
.+...+|+++|+.++|||||+++|+......... .+++.......+.+++ +.++||||||+.
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 93 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYI----------------STIGVDFKIRTIELDGKTIKLQIWDTAGQE 93 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHH----------------HHHCCSEEEEEEEETTEEEEEEEECCTTCT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcC----------------CcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 3457899999999999999999997643322111 1223233333444444 689999999999
Q ss_pred chhHHHHHHHhhcceEEEEeeCCCCCchhh-HHHHHHHHHc---CCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccc
Q 005713 164 DFGGEVERILNMVEGVLLVVDSVEGPMPQT-RFVLKKALEF---GHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (681)
Q Consensus 164 df~~e~~~~l~~aD~~llVvDa~~g~~~qt-~~~l~~~~~~---gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~ 239 (681)
+|...+..+++.+|++|+|+|+++....+. ..++..+... ++|+++|+||+|+...+.. ...+...+...
T Consensus 94 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v-~~~~~~~~~~~----- 167 (199)
T 3l0i_B 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVV-DYTTAKEFADS----- 167 (199)
T ss_dssp TCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCC-CSCC-CHHHHT-----
T ss_pred hHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccC-CHHHHHHHHHH-----
Confidence 998888889999999999999987543322 3344444443 6899999999998754311 11222222222
Q ss_pred ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 240 ~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
..++++++||++|. |+.++|+.|.+.+.
T Consensus 168 --~~~~~~~vSA~~g~----------gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 168 --LGIPFLETSAKNAT----------NVEQSFMTMAAEIK 195 (199)
T ss_dssp --TTCCBCCCCC---H----------HHHHHHHHHTTTTT
T ss_pred --cCCeEEEEECCCCC----------CHHHHHHHHHHHHH
Confidence 24579999999999 99999999988764
No 144
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.71 E-value=7.8e-18 Score=163.52 Aligned_cols=159 Identities=15% Similarity=0.157 Sum_probs=112.1
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
.+..+|+++|+.++|||||+++|+...... ... ..| .....+.+++..++||||||+.+|.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~--------------t~~----~~~~~~~~~~~~~~~~Dt~G~~~~~ 80 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVP--------------TVG----VNLETLQYKNISFEVWDLGGQTGVR 80 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECS--------------STT----CCEEEEEETTEEEEEEEECCSSSSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCC--------------CCc----eEEEEEEECCEEEEEEECCCCHhHH
Confidence 356889999999999999999996543221 000 112 2233456678999999999999998
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
..+..+++.+|++|+|+|+++... .....++..+.. .+.|+++|+||+|+..... .+++.+.+.... ...
T Consensus 81 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~--~~~ 155 (189)
T 2x77_A 81 PYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS---EAEIAEQLGVSS--IMN 155 (189)
T ss_dssp CCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGG--CCS
T ss_pred HHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC---HHHHHHHhChhh--ccC
Confidence 877788899999999999987532 333444444443 3789999999999975431 222322221111 122
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
..++++++||++|. |+.++++.+.+.++
T Consensus 156 ~~~~~~~~Sa~~~~----------gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 156 RTWTIVKSSSKTGD----------GLVEGMDWLVERLR 183 (189)
T ss_dssp SCEEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred CceEEEEccCCCcc----------CHHHHHHHHHHHHH
Confidence 35689999999999 99999999988764
No 145
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.71 E-value=1.5e-17 Score=172.24 Aligned_cols=154 Identities=18% Similarity=0.282 Sum_probs=112.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh--
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG-- 166 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~-- 166 (681)
..+|+++|++|+|||||+++|++....... -.|+|+......+.+ +..++||||||+.+|.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~----------------~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~ 65 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGN----------------WPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPY 65 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCS----------------SSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccC----------------CCCCcEEEEEEEEec-CCeEEEEECCCcCccCCC
Confidence 578999999999999999999875321110 116677666666666 7899999999998886
Q ss_pred ----HHHHHHHh--hcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 167 ----GEVERILN--MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 167 ----~e~~~~l~--~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
.....++. .+|++|+|+|++. ......++..+.+.++|+++|+||+|+...+. +..+...+...+
T Consensus 66 ~~~e~v~~~~~~~~~~d~vi~V~D~t~--~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~--~~~~~~~l~~~l----- 136 (272)
T 3b1v_A 66 SPEAKVARDYLLSQRADSILNVVDATN--LERNLYLTTQLIETGIPVTIALNMIDVLDGQG--KKINVDKLSYHL----- 136 (272)
T ss_dssp SHHHHHHHHHHHTTCCSEEEEEEEGGG--HHHHHHHHHHHHHTCSCEEEEEECHHHHHHTT--CCCCHHHHHHHH-----
T ss_pred ChHHHHHHHHHhcCCCCEEEEEecCCc--hHhHHHHHHHHHhcCCCEEEEEEChhhCCcCC--cHHHHHHHHHHc-----
Confidence 33455555 5999999999976 23445566777778999999999999753221 112233332222
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
.+|++++||++|. |+.+|++.+.+.+..
T Consensus 137 --g~~vi~~SA~~g~----------gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 137 --GVPVVATSALKQT----------GVDQVVKKAAHTTTS 164 (272)
T ss_dssp --TSCEEECBTTTTB----------SHHHHHHHHHHSCTT
T ss_pred --CCCEEEEEccCCC----------CHHHHHHHHHHHHhh
Confidence 3589999999999 999999999987643
No 146
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.71 E-value=9e-17 Score=154.13 Aligned_cols=155 Identities=13% Similarity=0.138 Sum_probs=103.0
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
.+..+|+++|..++|||||+++|+...... ...+. |... .....+......++||||||+.++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~--------------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~- 67 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTE--------------SEQY-KKEMLVDGQTHLVLIREEAGAPDA- 67 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCS--------------SSEE-EEEEEETTEEEEEEEEECSSSCCH-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCc--------------ceeE-EEEEEECCEEEEEEEEECCCCchh-
Confidence 346789999999999999999999865542 11111 2111 222222223467899999999873
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchhhH-HH---HHHHHH---cCCEEEEEEeecCCCCCCc-ccchhhHHHHHHHhhcc
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQTR-FV---LKKALE---FGHAVVVVVNKIDRPSARP-DYVINSTFELFIELNAT 238 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~qt~-~~---l~~~~~---~gip~ivviNKiD~~~~~~-~~~~~ei~~~~~~l~~~ 238 (681)
.+++.+|++|+|+|+++....... .+ +..+.. .++|+++|+||+|+..... ....+++..+.....
T Consensus 68 ----~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~-- 141 (178)
T 2iwr_A 68 ----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMK-- 141 (178)
T ss_dssp ----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHS--
T ss_pred ----HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhc--
Confidence 578899999999999874332222 22 222222 3689999999999853211 112334444333321
Q ss_pred cccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 239 DEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 239 ~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.++++++||++|. |+.++|+.+.+.+
T Consensus 142 ----~~~~~~~Sa~~~~----------~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 142 ----RCSYYETXATYGL----------NVDRVFQEVAQKV 167 (178)
T ss_dssp ----SEEEEEEBTTTTB----------THHHHHHHHHHHH
T ss_pred ----CCeEEEEeccccC----------CHHHHHHHHHHHH
Confidence 3579999999999 9999999988765
No 147
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=9.8e-17 Score=156.93 Aligned_cols=159 Identities=22% Similarity=0.244 Sum_probs=107.7
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
....+|+++|+.|+|||||+++|+..........+. +... .....+......+.||||||+.+ .
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~ 89 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL--------------ESTY-RHQATIDDEVVSMEILDTAGQED-T 89 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTC--------------CEEE-EEEEEETTEEEEEEEEECCCCCC-C
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCC--------------CceE-EEEEEECCEEEEEEEEECCCCCc-c
Confidence 356899999999999999999999875533222221 2111 12223333447899999999998 7
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
..+..+++.+|++|+|+|+++... .....++..+.. .++|+++|+||+|+...+ ....++...+....
T Consensus 90 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~-~v~~~~~~~~~~~~------ 162 (196)
T 2atv_A 90 IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSR-QVSTEEGEKLATEL------ 162 (196)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGC-CSCHHHHHHHHHHH------
T ss_pred cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccccccc-ccCHHHHHHHHHHh------
Confidence 778889999999999999987322 222333333333 478999999999986532 11123333333322
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.++++++||++|.+ |+.++++.|.+.+
T Consensus 163 -~~~~~~~Sa~~g~~---------gi~~l~~~l~~~i 189 (196)
T 2atv_A 163 -ACAFYECSACTGEG---------NITEIFYELCREV 189 (196)
T ss_dssp -TSEEEECCTTTCTT---------CHHHHHHHHHHHH
T ss_pred -CCeEEEECCCcCCc---------CHHHHHHHHHHHH
Confidence 35899999999862 6788888887765
No 148
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.70 E-value=2.2e-17 Score=159.87 Aligned_cols=161 Identities=14% Similarity=0.091 Sum_probs=108.1
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
....+|+++|+.|+|||||+++|+..........+. +... .....+......+.||||||+.+|.
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~ 69 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV--------------FENY-TASFEIDTQRIELSLWDTSGSPYYD 69 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCS--------------EEEE-EEEEECSSCEEEEEEEEECCSGGGT
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc--------------ceeE-EEEEEECCEEEEEEEEECCCChhhh
Confidence 356789999999999999999999865432222221 1111 1122233345789999999999998
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchhh--HHHHHHHHH--cCCEEEEEEeecCCCCCC-----------cccchhhHHHH
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQT--RFVLKKALE--FGHAVVVVVNKIDRPSAR-----------PDYVINSTFEL 231 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~qt--~~~l~~~~~--~gip~ivviNKiD~~~~~-----------~~~~~~ei~~~ 231 (681)
.....+++.+|++|+|+|+++....+. ..++..+.. .+.|+++|+||+|+.... .....++...+
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 149 (184)
T 1m7b_A 70 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM 149 (184)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred hhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHH
Confidence 888888999999999999987433222 233344444 378999999999986421 01112233333
Q ss_pred HHHhhcccccCCceEEEeecc-cCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 232 FIELNATDEQCDFQAIYASGI-QGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 232 ~~~l~~~~~~~~~pvi~~SA~-~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
...++ .++++++||+ +|. |+.++|+.+.+.+
T Consensus 150 ~~~~~------~~~~~e~Sa~~~~~----------gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 150 AKQIG------AATYIECSALQSEN----------SVRDIFHVATLAC 181 (184)
T ss_dssp HHHHT------CSEEEECBTTTBHH----------HHHHHHHHHHHHH
T ss_pred HHHcC------CcEEEEeeecCCCc----------CHHHHHHHHHHHH
Confidence 33332 2479999999 677 8999999988754
No 149
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.70 E-value=2.2e-17 Score=183.88 Aligned_cols=155 Identities=18% Similarity=0.217 Sum_probs=97.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
..+|+|+|++|+|||||+++|++....+.. ...|+|.+.....+.+++..++||||||+.++...
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs---------------~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ 297 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVS---------------HMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEE 297 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC---------------------------------CEEEEETTEEEEEEC----------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccC---------------CCCCceEEEEEEEEEECCeEEEEEECCCCCcchhH
Confidence 357999999999999999999875432111 12267777777788889999999999999887765
Q ss_pred HHH--------HHhhcceEEEEeeCCCCCch----hhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhh
Q 005713 169 VER--------ILNMVEGVLLVVDSVEGPMP----QTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELN 236 (681)
Q Consensus 169 ~~~--------~l~~aD~~llVvDa~~g~~~----qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~ 236 (681)
++. +++.+|++|+|+|++++... ....++..+. ++|+++|+||+|+....... . +.+.+.+
T Consensus 298 ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~----~-~~l~~~~ 370 (476)
T 3gee_A 298 IEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADAL----I-RAIADGT 370 (476)
T ss_dssp ----------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHH----H-HHHHHHH
T ss_pred HHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchh----H-HHHHhcC
Confidence 543 46789999999999998766 4444444443 79999999999997654221 1 1122211
Q ss_pred cccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC-CC
Q 005713 237 ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP-GP 281 (681)
Q Consensus 237 ~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp-~p 281 (681)
..+++++||++|. |+.+|++.|.+.++ .+
T Consensus 371 ------~~~~i~vSAktg~----------GI~eL~~~i~~~~~~~~ 400 (476)
T 3gee_A 371 ------GTEVIGISALNGD----------GIDTLKQHMGDLVKNLD 400 (476)
T ss_dssp ------TSCEEECBTTTTB----------SHHHHHHHHTHHHHSSC
T ss_pred ------CCceEEEEECCCC----------CHHHHHHHHHHHHhhcc
Confidence 1479999999999 99999999999886 44
No 150
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.69 E-value=7.9e-17 Score=171.58 Aligned_cols=158 Identities=17% Similarity=0.152 Sum_probs=109.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
+..+|+|+|++++|||||+++|+....... ..|+......+.+++..++||||||+.+|..
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-------------------~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 224 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-------------------IPTIGFNVETVEYKNISFTVWDVGGQDKIRP 224 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-------------------EEETTEEEEEEEETTEEEEEEECC-----CC
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-------------------ccccceEEEEEecCcEEEEEEECCCCHhHHH
Confidence 456899999999999999999976543210 0133333455778899999999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC
Q 005713 168 EVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC 242 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~ 242 (681)
.+..+++.+|++|+|+|+++... .....++..+.. .++|+++|+||+|+.+... .+++...+.... ....
T Consensus 225 ~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~i~~~~~~~~--~~~~ 299 (329)
T 3o47_A 225 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHS--LRHR 299 (329)
T ss_dssp SHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHHTCTT--CCSS
T ss_pred HHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC---HHHHHHHhchhh--hhcC
Confidence 99999999999999999976432 223333333332 2789999999999976531 233333222111 1234
Q ss_pred CceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 243 DFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 243 ~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.++++++||++|. |+.+||+.|.+.+.
T Consensus 300 ~~~~~~vSAk~g~----------gi~el~~~l~~~l~ 326 (329)
T 3o47_A 300 NWYIQATCATSGD----------GLYEGLDWLSNQLR 326 (329)
T ss_dssp CEEEEECBTTTTB----------THHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCc----------CHHHHHHHHHHHHH
Confidence 6789999999999 99999999998764
No 151
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.69 E-value=8.1e-17 Score=164.51 Aligned_cols=160 Identities=15% Similarity=0.178 Sum_probs=114.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCc-----
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGH----- 162 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh----- 162 (681)
...+|+++|++|+|||||+++|++.......... .|+|.......+.+++..++||||||+
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~--------------~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~ 85 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGA--------------TSVTRACTTGSRRWDKCHVEVVDTPDIFSSQV 85 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC-----------------------CCSCEEEEEEETTEEEEEEECCSCSSTTH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCC--------------CCccccEEEEEEEECCcEEEEEECCCCCCCCC
Confidence 4688999999999999999999987654332221 146666666778889999999999998
Q ss_pred ---cchhHHHHHHH----hhcceEEEEeeCCCCCchhhHHHHHHHHHc------CCEEEEEEeecCCCCCCcccchh---
Q 005713 163 ---SDFGGEVERIL----NMVEGVLLVVDSVEGPMPQTRFVLKKALEF------GHAVVVVVNKIDRPSARPDYVIN--- 226 (681)
Q Consensus 163 ---~df~~e~~~~l----~~aD~~llVvDa~~g~~~qt~~~l~~~~~~------gip~ivviNKiD~~~~~~~~~~~--- 226 (681)
.+|..++.+++ +.+|++|+|+|+.. ....+...++.+.+. +.|+|+|+||+|+.+.+.++.+.
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~ 164 (247)
T 3lxw_A 86 SKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTE 164 (247)
T ss_dssp HHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCC
T ss_pred CcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcc
Confidence 56667777766 88999999999975 666667777777664 78999999999997765544432
Q ss_pred --hHHHHHHHhhcccccCCceEEEeeccc-----CCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 227 --STFELFIELNATDEQCDFQAIYASGIQ-----GKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 227 --ei~~~~~~l~~~~~~~~~pvi~~SA~~-----G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.++.+....+. .++++++.. +. ++.+||+.|.+.++
T Consensus 165 ~~~l~~l~~~~g~-------~~~~~~~~~~~~~~~~----------~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 165 NRALRELVAECGG-------RVCAFDNRATGREQEA----------QVEQLLGMVEGLVL 207 (247)
T ss_dssp CHHHHHHHHHTTT-------CEEECCTTCCHHHHHH----------HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCC-------eEEEEeCCCCccccHH----------HHHHHHHHHHHHHH
Confidence 24444443322 344444432 34 88999999988775
No 152
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.69 E-value=3.9e-17 Score=161.83 Aligned_cols=161 Identities=14% Similarity=0.091 Sum_probs=108.1
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
....+|+++|..|+|||||+++|+..........+. +.+. .....+......+.||||||+.+|.
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~ 90 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV--------------FENY-TASFEIDTQRIELSLWDTSGSPYYD 90 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCS--------------EEEE-EEEEESSSSEEEEEEEEECCSGGGT
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcc--------------ceeE-EEEEEECCEEEEEEEEeCCCcHhhh
Confidence 356899999999999999999999865532222221 1111 1112223345789999999999998
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchhh--HHHHHHHHH--cCCEEEEEEeecCCCCCC-----------cccchhhHHHH
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQT--RFVLKKALE--FGHAVVVVVNKIDRPSAR-----------PDYVINSTFEL 231 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~qt--~~~l~~~~~--~gip~ivviNKiD~~~~~-----------~~~~~~ei~~~ 231 (681)
.....+++.+|++|+|+|+++...... ..++..+.. .+.|+++|+||+|+.... ..-..++...+
T Consensus 91 ~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 170 (205)
T 1gwn_A 91 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM 170 (205)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred HHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHH
Confidence 888888999999999999987432222 233344444 378999999999986421 00112233333
Q ss_pred HHHhhcccccCCceEEEeecc-cCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 232 FIELNATDEQCDFQAIYASGI-QGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 232 ~~~l~~~~~~~~~pvi~~SA~-~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
...++ .++++++||+ +|. |+.++|+.+.+.+
T Consensus 171 ~~~~~------~~~~~e~SAk~~~~----------gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 171 AKQIG------AATYIECSALQSEN----------SVRDIFHVATLAC 202 (205)
T ss_dssp HHHHT------CSEEEECCTTTCHH----------HHHHHHHHHHHHH
T ss_pred HHHcC------CCEEEEeeeccCCc----------CHHHHHHHHHHHH
Confidence 33332 2479999999 677 8999999987653
No 153
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.69 E-value=4.9e-17 Score=157.36 Aligned_cols=156 Identities=22% Similarity=0.250 Sum_probs=101.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCC--------
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPG-------- 161 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPG-------- 161 (681)
.+|+++|++|+|||||+++|++........ .|+|..... +.+. .++||||||
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----------------~~~t~~~~~--~~~~--~~~l~Dt~G~~~~~~~~ 61 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKR----------------PGVTRKIIE--IEWK--NHKIIDMPGFGFMMGLP 61 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSS----------------TTCTTSCEE--EEET--TEEEEECCCBSCCTTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCC----------------CCccceeEE--EecC--CEEEEECCCccccccCC
Confidence 689999999999999999999764322111 133332222 2233 789999999
Q ss_pred ---ccchhHHHHHHHhh-cce---EEEEeeCCC-----------CCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCccc
Q 005713 162 ---HSDFGGEVERILNM-VEG---VLLVVDSVE-----------GPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDY 223 (681)
Q Consensus 162 ---h~df~~e~~~~l~~-aD~---~llVvDa~~-----------g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~ 223 (681)
+..|...+..+++. +|+ ++.|+|+.. +...++.+.+..+...++|+++|+||+|+...+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--- 138 (190)
T 2cxx_A 62 KEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV--- 138 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---
T ss_pred HHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---
Confidence 56666666666665 554 555555432 111223344555666789999999999987654
Q ss_pred chhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 224 VINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 224 ~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.+++.++...++........+++++||++|. |+.++++.+.+.+.
T Consensus 139 -~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~----------~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 139 -QEVINFLAEKFEVPLSEIDKVFIPISAKFGD----------NIERLKNRIFEVIR 183 (190)
T ss_dssp -HHHHHHHHHHHTCCGGGHHHHEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhhhhhhccCCcEEEEecCCCC----------CHHHHHHHHHHhcc
Confidence 2233333334443211112468999999999 99999999988764
No 154
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.68 E-value=8e-17 Score=179.10 Aligned_cols=156 Identities=23% Similarity=0.309 Sum_probs=115.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCC------
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPG------ 161 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPG------ 161 (681)
..++|+|+|.+|+|||||+++|++...... +...|+|.+.....+.|.+..++||||||
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v---------------~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~ 86 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIV---------------EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE 86 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC--------------------------CEEEECTTCSSCCEEECCCC------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCccc---------------CCCCCcceeEEEEEEEECCceEEEEECCCCCCcch
Confidence 367899999999999999999987533211 11238888888888899999999999999
Q ss_pred --ccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccc
Q 005713 162 --HSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (681)
Q Consensus 162 --h~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~ 239 (681)
+..+...+..++..+|++|+|+|+.++......+++..+.+.++|+++|+||+|+...+ ....+ +..++.
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~--~~~~e----~~~lg~-- 158 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR--ANIYD----FYSLGF-- 158 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-----------CC----SGGGSS--
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh--hhHHH----HHHcCC--
Confidence 67788888899999999999999999999999999999988999999999999986432 00011 111111
Q ss_pred ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 240 ~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
-+++++||++|. |+.+|++.+.+.++.
T Consensus 159 ----~~~~~iSA~~g~----------gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 159 ----GEPYPISGTHGL----------GLGDLLDAVAEHFKN 185 (456)
T ss_dssp ----SSEEECCTTTCT----------THHHHHHHHHTTGGG
T ss_pred ----CceEEeeccccc----------chHHHHHHHHhhccc
Confidence 136799999998 999999999988764
No 155
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.68 E-value=3.2e-16 Score=173.37 Aligned_cols=162 Identities=22% Similarity=0.253 Sum_probs=114.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
...+|+|+|++|+|||||+++|++........ ..|+|.+.....+.+++..+.+|||||+..+..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~---------------~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~ 243 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSP---------------IPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSR 243 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECC---------------CC------CCEEEEETTEEEEESSCSCC-----
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCC---------------CCCCcCCceEEEEEECCEEEEEEECCCCccccc
Confidence 45799999999999999999999764322111 126777777778888999999999999854432
Q ss_pred H------------HHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHH-H
Q 005713 168 E------------VERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFI-E 234 (681)
Q Consensus 168 e------------~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~-~ 234 (681)
. ...+++.+|++++|+|+.++...+...++..+...+.|+++|+||+|+.+.+ ....+++.+.+. .
T Consensus 244 ~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~-~~~~~~~~~~~~~~ 322 (439)
T 1mky_A 244 VEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHR-EKRYDEFTKLFREK 322 (439)
T ss_dssp ------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTG-GGCHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCch-hhHHHHHHHHHHHH
Confidence 2 2457788999999999999888888777788888899999999999987543 112233332221 1
Q ss_pred hhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 235 LNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 235 l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
+.. ....|++++||++|. |+..|++.+.+.+
T Consensus 323 ~~~---~~~~~~~~~SA~~g~----------gv~~l~~~i~~~~ 353 (439)
T 1mky_A 323 LYF---IDYSPLIFTSADKGW----------NIDRMIDAMNLAY 353 (439)
T ss_dssp CGG---GTTSCEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred hcc---CCCCcEEEEECCCCC----------CHHHHHHHHHHHH
Confidence 111 124589999999999 8999999988655
No 156
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.49 E-value=4.2e-18 Score=167.81 Aligned_cols=164 Identities=15% Similarity=0.126 Sum_probs=107.0
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
.+..+|+++|++|+|||||+++|+..........+. +... .....+......+.||||||+.+|.
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--------------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~ 92 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV--------------FDNY-SANVMVDGKPVNLGLWDTAGQEDYD 92 (204)
Confidence 356789999999999999999998654432211111 1111 1122233445678899999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCchhhH--HHHHHHHHc--CCEEEEEEeecCCCCCCcccchhhHHHH------HHHhh
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMPQTR--FVLKKALEF--GHAVVVVVNKIDRPSARPDYVINSTFEL------FIELN 236 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~qt~--~~l~~~~~~--gip~ivviNKiD~~~~~~~~~~~ei~~~------~~~l~ 236 (681)
..+..+++.+|++|+|+|+++....+.. .++..+... ++|+++|+||+|+...+. ..+.+.+. ..+..
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~ 170 (204)
T 3th5_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD--TIEKLKEKKLTPITYPQGL 170 (204)
Confidence 9999999999999999998875433332 344444444 789999999999875421 01111000 00000
Q ss_pred cccccCCc-eEEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 237 ATDEQCDF-QAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 237 ~~~~~~~~-pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
.......+ +++++||++|. |+.++++.|.+.
T Consensus 171 ~~~~~~~~~~~~~vSA~~g~----------gi~~l~~~l~~~ 202 (204)
T 3th5_A 171 AMAKEIGAVKYLECSALTQR----------GLKTVFDEAIRA 202 (204)
Confidence 11112234 79999999999 888888887754
No 157
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.66 E-value=1.4e-16 Score=176.80 Aligned_cols=154 Identities=19% Similarity=0.239 Sum_probs=107.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhHH
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGE 168 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e 168 (681)
..+|+|+|++|+|||||+++|++....+.... .|+|.+.....+.+++..++||||||+.++...
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~---------------~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ 288 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDL---------------PGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQ 288 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCC---------------TTCCHHHHHHEEEETTEEEEECC----------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCC---------------CCeeEEEEEEEEEECCEEEEEEECCccccchhH
Confidence 35799999999999999999998754322111 155555555667788999999999999887655
Q ss_pred HHH--------HHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 169 VER--------ILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 169 ~~~--------~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
++. +++.+|++|+|+|++++...+...++..+.. .|+++|+||+|+...+... .+. ++
T Consensus 289 ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~piivV~NK~Dl~~~~~~~---~~~----~~----- 354 (462)
T 3geh_A 289 VEKIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNKIDLVEKQLIT---SLE----YP----- 354 (462)
T ss_dssp ----------CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCEEEEEECTTSSCGGGST---TCC----CC-----
T ss_pred HHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhccC--CcEEEEEECCCCCcchhhH---HHH----Hh-----
Confidence 544 4677999999999999888888777776653 7999999999987543211 110 00
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
...++++++||++|. |++.|++.|.+.+...
T Consensus 355 ~~~~~~i~iSAktg~----------Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 355 ENITQIVHTAAAQKQ----------GIDSLETAILEIVQTG 385 (462)
T ss_dssp TTCCCEEEEBTTTTB----------SHHHHHHHHHHHHTTS
T ss_pred ccCCcEEEEECCCCC----------CHHHHHHHHHHHHhcc
Confidence 124579999999999 9999999999987654
No 158
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.66 E-value=3.9e-16 Score=164.62 Aligned_cols=161 Identities=16% Similarity=0.245 Sum_probs=109.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEee-CCeEEEEEeCCCccch--
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY-NDTKINIIDTPGHSDF-- 165 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~-~~~~i~iiDTPGh~df-- 165 (681)
..+|+++|.+|+|||||+++|+......... ..|.|+......+.+ ++..++||||||+.+|
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~---------------~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 67 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTR---------------RLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFME 67 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGG---------------GCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccc---------------CcCCccceEEEEEEeCCceEEEEEECCCcHHHhh
Confidence 4689999999999999999998763322111 114555555555554 5789999999999998
Q ss_pred ---hHHHHHHHhhcceEEEEeeCCCCCchhhHHH----HHHHHHc--CCEEEEEEeecCCCCCCcc-----cchhhHHHH
Q 005713 166 ---GGEVERILNMVEGVLLVVDSVEGPMPQTRFV----LKKALEF--GHAVVVVVNKIDRPSARPD-----YVINSTFEL 231 (681)
Q Consensus 166 ---~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~----l~~~~~~--gip~ivviNKiD~~~~~~~-----~~~~ei~~~ 231 (681)
......+++.+|++|+|+|+++....+.... +..+... ++|+++|+||+|+...+.. ...+++.++
T Consensus 68 ~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~ 147 (307)
T 3r7w_A 68 NYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSET 147 (307)
T ss_dssp HHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHH
Confidence 5667778899999999999988654443322 3333322 7999999999998752211 111233333
Q ss_pred HHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 232 FIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 232 ~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
...++. ..++++++||++ . ++.++|..++..+-
T Consensus 148 ~~~~g~----~~~~~~~tSa~~-~----------~i~e~~~~iv~~li 180 (307)
T 3r7w_A 148 SSEFGF----PNLIGFPTSIWD-E----------SLYKAWSQIVCSLI 180 (307)
T ss_dssp HHTTTC----CSCEEEECCTTS-S----------HHHHHHHHHHHTTC
T ss_pred HHHcCC----CCeEEEEeeecC-C----------hHHHHHHHHHHHHc
Confidence 332221 136899999998 5 77777777776654
No 159
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.66 E-value=3.3e-16 Score=174.45 Aligned_cols=152 Identities=22% Similarity=0.267 Sum_probs=115.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCcc-chh--
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS-DFG-- 166 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~-df~-- 166 (681)
.+|+|+|.+|+|||||+++|++....+... ..|+|.+.....+.+++..+.||||||+. ++.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs~---------------~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ 308 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTD---------------IPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDL 308 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCC---------------SSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTT
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccCC---------------CCCeeeeeEEEEEecCCeEEEEEECCCccccchhh
Confidence 689999999999999999999875432211 11566666667778889999999999998 654
Q ss_pred ------HHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 167 ------GEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 167 ------~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
.....++..+|++|+|+|++++...+..+++..+ .++|+++|+||+|+.... ..+++.+.+ .
T Consensus 309 ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~---~~~~~~~~~---~---- 376 (482)
T 1xzp_A 309 VERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKI---NEEEIKNKL---G---- 376 (482)
T ss_dssp CCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCC---CHHHHHHHH---T----
T ss_pred HHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECccccccc---CHHHHHHHh---c----
Confidence 2345688999999999999988776666766655 478999999999996531 122333221 1
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
..+|++++||++|. |+++|++.|.+.+.
T Consensus 377 -~~~~~i~iSAktg~----------Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 377 -TDRHMVKISALKGE----------GLEKLEESIYRETQ 404 (482)
T ss_dssp -CSTTEEEEEGGGTC----------CHHHHHHHHHHHTH
T ss_pred -CCCcEEEEECCCCC----------CHHHHHHHHHHHHh
Confidence 23579999999999 99999999988764
No 160
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.63 E-value=3.5e-16 Score=165.41 Aligned_cols=161 Identities=14% Similarity=0.153 Sum_probs=110.2
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCccc
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSD 164 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~d 164 (681)
....+|+++|.+|+|||||+++|+..........+. .......+..++ ..++||||||+.+
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~-----------------~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 215 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-----------------FDNYSANVMVDGKPVNLGLWDTAGLED 215 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCS-----------------EEEEEEEEEETTEEEEEEEEEECCCGG
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcc-----------------cceeEEEEEECCEEEEEEEEeCCCchh
Confidence 356889999999999999999999765432222221 111122233344 5667999999999
Q ss_pred hhHHHHHHHhhcceEEEEeeCCCCCchhhH--HHHHHHHHc--CCEEEEEEeecCCCCCCc-----------ccchhhHH
Q 005713 165 FGGEVERILNMVEGVLLVVDSVEGPMPQTR--FVLKKALEF--GHAVVVVVNKIDRPSARP-----------DYVINSTF 229 (681)
Q Consensus 165 f~~e~~~~l~~aD~~llVvDa~~g~~~qt~--~~l~~~~~~--gip~ivviNKiD~~~~~~-----------~~~~~ei~ 229 (681)
|......+++.+|++|+|+|+++....+.. .++..+... ++|+++|+||+|+..... ....++..
T Consensus 216 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~ 295 (332)
T 2wkq_A 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 295 (332)
T ss_dssp GTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred hhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHH
Confidence 998888889999999999999875433332 344445444 799999999999864310 01111222
Q ss_pred HHHHHhhcccccCCc-eEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 230 ELFIELNATDEQCDF-QAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 230 ~~~~~l~~~~~~~~~-pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
.+... ..+ +++++||++|. |+..+++.|.+.+..|
T Consensus 296 ~~~~~-------~~~~~~~~~Sa~~~~----------gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 296 AMAKE-------IGAVKYLECSALTQR----------GLKTVFDEAIRAVLCP 331 (332)
T ss_dssp HHHHH-------TTCSEEEECCTTTCT----------THHHHHHHHHHHHHC-
T ss_pred HHHHH-------cCCcEEEEecCCCCc----------CHHHHHHHHHHHHhcC
Confidence 22222 233 79999999999 9999999998876543
No 161
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=7.9e-16 Score=153.39 Aligned_cols=160 Identities=14% Similarity=0.163 Sum_probs=102.5
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccc-cceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc-
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN-QTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD- 164 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~-~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d- 164 (681)
....+|+++|.+|+|||||+++|++....+... ... |.+.......+......+.+|||+|...
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~--------------g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~ 100 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVL--------------GEDTYERTLMVDGESATIILLDMWENKGE 100 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---C--------------CTTEEEEEEEETTEEEEEEEECCTTTTHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCcc--------------ceeeEEEEEEECCeeeEEEEeecCCCcch
Confidence 356899999999999999999998643322111 111 3333233222322335678999999877
Q ss_pred hhHHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccc
Q 005713 165 FGGEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (681)
Q Consensus 165 f~~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~ 239 (681)
+......+++.+|++|+|+|.++... .....++..+.. .++|+|+|+||+|+...+. ...++...+...
T Consensus 101 ~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~-v~~~e~~~~a~~----- 174 (211)
T 2g3y_A 101 NEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCRE-VSVSEGRACAVV----- 174 (211)
T ss_dssp HHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCC-SCHHHHHHHHHH-----
T ss_pred hhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCce-EeHHHHHHHHHH-----
Confidence 33333445677999999999876322 222334444443 3689999999999864321 111222221111
Q ss_pred ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 240 ~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
..++++++||++|. |+.++|+.|.+.+
T Consensus 175 --~~~~~~e~SAk~g~----------~v~elf~~l~~~i 201 (211)
T 2g3y_A 175 --FDCKFIETSAAVQH----------NVKELFEGIVRQV 201 (211)
T ss_dssp --HTCEEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred --cCCEEEEEeCCCCC----------CHHHHHHHHHHHH
Confidence 23579999999999 9999999998866
No 162
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.63 E-value=6.8e-16 Score=159.99 Aligned_cols=167 Identities=15% Similarity=0.191 Sum_probs=97.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCccch
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDF 165 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df 165 (681)
...+|+++|++|+|||||+|+|+............ ......++++......+.+++ ..++||||||+.++
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~--------~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~ 78 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGP--------SHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 78 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC-----------------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCc--------ccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence 35789999999999999999997654322111000 001122344444445555555 48999999998543
Q ss_pred -------hHHH-------HHHHhh-------------cceEEEEeeCC-CCCchhhHHHHHHHHHcCCEEEEEEeecCCC
Q 005713 166 -------GGEV-------ERILNM-------------VEGVLLVVDSV-EGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (681)
Q Consensus 166 -------~~e~-------~~~l~~-------------aD~~llVvDa~-~g~~~qt~~~l~~~~~~gip~ivviNKiD~~ 217 (681)
...+ ..++.. +|++|++++.. .+....+..+++.+.. ++|+|+|+||+|+.
T Consensus 79 ~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 79 VDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTL 157 (274)
T ss_dssp SCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGS
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCC
Confidence 2222 445554 67888888655 4888888888888877 89999999999986
Q ss_pred CCC-cccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 218 SAR-PDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 218 ~~~-~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
... .....+++.+.+. ...++++.+||++|. ++..+++.|.+.+|-
T Consensus 158 ~~~e~~~~~~~i~~~l~-------~~~i~v~~~sa~~~~----------~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 158 TPEECQQFKKQIMKEIQ-------EHKIKIYEFPETDDE----------EENKLVKKIKDRLPL 204 (274)
T ss_dssp CHHHHHHHHHHHHHHHH-------HTTCCCCCC---------------------CHHHHHTCSE
T ss_pred CHHHHHHHHHHHHHHHH-------HcCCeEEcCCCCCCh----------hHHHHHHHHhcCCCc
Confidence 421 1122222333222 124578899999998 888999999887653
No 163
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.63 E-value=1.1e-15 Score=171.76 Aligned_cols=159 Identities=18% Similarity=0.195 Sum_probs=115.7
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
....+|+|+|.+++|||||+++|+........ .|+......+.++++.++||||||+.+|.
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~-------------------~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 380 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTI-------------------PTVGFNVETVTYKNVKFNVWDVGGQDKIR 380 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCC-------------------CCSSEEEEEEESSSCEEEEEEECCCGGGS
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcC-------------------CccceeEEEEEeCCEEEEEEECCCcHHHH
Confidence 34678999999999999999999986533111 12233344577788999999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCch-hhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcc-cc
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNAT-DE 240 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~-~~ 240 (681)
..+..+++.+|++|+|+|+++.... ....++..+.. .++|+|+|+||+|+.+... ..++.. .++.. ..
T Consensus 381 ~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~---~~~~~~---~~~~~~~~ 454 (497)
T 3lvq_E 381 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK---PHEIQE---KLGLTRIR 454 (497)
T ss_dssp GGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCC---HHHHHH---HTTCTTCC
T ss_pred HHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCC---HHHHHH---Hhchhhhh
Confidence 9999999999999999999875332 22334444433 3799999999999875421 222322 22211 11
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
...++++++||++|. |+.++|+.|.+.+..
T Consensus 455 ~~~~~~~~~SA~~g~----------gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 455 DRNWYVQPSCATSGD----------GLYEGLTWLTSNYKS 484 (497)
T ss_dssp SSCEEEEECBTTTTB----------THHHHHHHHHHHCC-
T ss_pred cCCeEEEEEECCCCC----------CHHHHHHHHHHHHHh
Confidence 235689999999999 999999999988743
No 164
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.62 E-value=7e-16 Score=149.52 Aligned_cols=163 Identities=20% Similarity=0.226 Sum_probs=102.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccc--cccceeeeeeccchhhcccceeEEeeeeEE---eeCCeEEEEEeCCCccc
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFR--DNQTVKERIMDSNDLERERGITILSKNTSI---TYNDTKINIIDTPGHSD 164 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~--~~~~~~~~~~D~~~~E~erGiTi~~~~~~~---~~~~~~i~iiDTPGh~d 164 (681)
.+|+++|.+|+|||||+++|++....+. ...+ .|+.+......+ ......+.||||||+.+
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t--------------~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSAT--------------VGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE 68 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-------------------------CSEEEEEEEC---------CEEEEEEECSHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCccee--------------ccEEeEEeeeccccCCCCceEEEEEecCCCHH
Confidence 5799999999999999999987421111 1111 133332222222 12467899999999999
Q ss_pred hhHHHHHHHhhcceEEEEeeCCCCC--chhhHHHHHHHHH--cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 165 FGGEVERILNMVEGVLLVVDSVEGP--MPQTRFVLKKALE--FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 165 f~~e~~~~l~~aD~~llVvDa~~g~--~~qt~~~l~~~~~--~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
|......+++.+|++++|+|.+++. ......++..+.. .+.|+++|+||+|+.+.+. +..........+. .
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~---~ 143 (184)
T 2zej_A 69 FYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQ--RKACMSKITKELL---N 143 (184)
T ss_dssp HHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHH--HHHHHHHHHHHTT---T
T ss_pred HHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchh--hHHHHHHHHHHHH---H
Confidence 9887888899999999999988763 2233345554443 3789999999999865321 1111111111221 1
Q ss_pred cCCce----EEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 241 QCDFQ----AIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 241 ~~~~p----vi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
...++ ++++||++|. .++..|++.|.+.++.
T Consensus 144 ~~~~~~~~~~~~~Sa~~~~---------~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 144 KRGFPAIRDYHFVNATEES---------DALAKLRKTIINESLN 178 (184)
T ss_dssp CTTSCEEEEEEECCTTSCC---------HHHHHHHHHHHHHHHC
T ss_pred hcCCcchhheEEEecccCc---------hhHHHHHHHHHHHHhc
Confidence 22344 8999999983 1788999998877654
No 165
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.61 E-value=1e-15 Score=173.58 Aligned_cols=162 Identities=18% Similarity=0.246 Sum_probs=109.3
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEee------eeEE--eeCCeEEEEE
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSK------NTSI--TYNDTKINII 157 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~------~~~~--~~~~~~i~ii 157 (681)
.....+|+++|.+|+|||||+++|++.........+. |+++... ...+ ...+..++||
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~--------------g~~~~~~~~~~~~~v~~~~~~~~~~~~i~ 103 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTH--------------GLNVVTKQAPNIKGLENDDELKECLFHFW 103 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-------------------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc--------------ceEEEEeccccccceeecCCCceEEEEEE
Confidence 3456899999999999999999999765432222221 3333322 1111 2336899999
Q ss_pred eCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcC--CEEEEEEeecCCCCCCcccchhhHHHHHHHh
Q 005713 158 DTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFG--HAVVVVVNKIDRPSARPDYVINSTFELFIEL 235 (681)
Q Consensus 158 DTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~g--ip~ivviNKiD~~~~~~~~~~~ei~~~~~~l 235 (681)
||||+..|......+++.+|++|+|+|++.. .....++..+..++ .|+|+|+||+|+...+. ...+++...+..
T Consensus 104 Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~-v~~~~~~~~~~~- 179 (535)
T 3dpu_A 104 DFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYN-IEQKKINERFPA- 179 (535)
T ss_dssp CCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCC-CCHHHHHHHCGG-
T ss_pred ECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccc-cCHHHHHHHHHh-
Confidence 9999999998888899999999999999764 55566777777765 99999999999875431 112333333222
Q ss_pred hcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 236 NATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 236 ~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
..++++++||++|. |+.+|++.+.+.+...
T Consensus 180 ------~~~~~~~vSA~~g~----------gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 180 ------IENRFHRISCKNGD----------GVESIAKSLKSAVLHP 209 (535)
T ss_dssp ------GTTCEEECCC---------------CTTHHHHHHHHHTCT
T ss_pred ------cCCceEEEecCccc----------CHHHHHHHHHHHHhcc
Confidence 24579999999999 9999999999887654
No 166
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.60 E-value=2.7e-15 Score=146.79 Aligned_cols=160 Identities=14% Similarity=0.148 Sum_probs=99.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc-hh
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD-FG 166 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d-f~ 166 (681)
...+|+++|.+|+|||||+++|++....+..... .-|.+.......+......+.+|||+|... +.
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~ 71 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE-------------VLGEDTYERTLMVDGESATIILLDMWENKGENE 71 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----G-------------GGCTTEEEEEEEETTEEEEEEEECCCCC----C
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcccc-------------ccceeEEEEEEEECCeEEEEEEEEeccCcchhh
Confidence 4578999999999999999999975432221100 013333223222322335678999999865 33
Q ss_pred HHHHHHHhhcceEEEEeeCCCCCc-hhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 167 GEVERILNMVEGVLLVVDSVEGPM-PQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 167 ~e~~~~l~~aD~~llVvDa~~g~~-~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
.....+++.+|++++|+|.++... .....++..+.. .++|+++|+||+|+...+. ...++...+.. .
T Consensus 72 ~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~-v~~~~~~~~a~-------~ 143 (192)
T 2cjw_A 72 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXRE-VSVSEGRAXAV-------V 143 (192)
T ss_dssp TTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCC-SCHHHHHHHHH-------H
T ss_pred hHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhcccc-ccHHHHHHHHH-------H
Confidence 334556788999999999876322 222334443433 3689999999999864221 11122211111 1
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.+++++++||++|. |+.++|+.+.+.+
T Consensus 144 ~~~~~~e~SA~~g~----------~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 144 FDXKFIETSAAVQH----------NVKELFEGIVRQV 170 (192)
T ss_dssp TTCEEEECBTTTTB----------SHHHHHHHHHHHH
T ss_pred hCCceEEeccccCC----------CHHHHHHHHHHHH
Confidence 24579999999999 9999999998766
No 167
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.60 E-value=3.7e-15 Score=146.27 Aligned_cols=158 Identities=19% Similarity=0.243 Sum_probs=108.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCccch
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSDF 165 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~df 165 (681)
...+|+++|+.|+|||||+++|++.........+. |++.... .+.+.+ ..+.||||||+..|
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~--------------~~~~~~~--~i~~~g~~~~~~i~Dt~g~~~~ 67 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI--------------GVEFATR--SIQVDGKTIKAQIWDTAGQERY 67 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCC--------------SCEEEEE--EEEETTEEEEEEEEECSSGGGT
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc--------------ceeEEEE--EEEECCEEEEEEEEECCCchhh
Confidence 45789999999999999999999865432222211 3333333 334444 57789999999998
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCCchh-hHHHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccccc
Q 005713 166 GGEVERILNMVEGVLLVVDSVEGPMPQ-TRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQ 241 (681)
Q Consensus 166 ~~e~~~~l~~aD~~llVvDa~~g~~~q-t~~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~ 241 (681)
......+++.+|++++|+|..+..... ...++..+.. .+.|+++|+||+|+...+ .....+.+.+..+
T Consensus 68 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~-~~~~~~a~~l~~~------- 139 (199)
T 2f9l_A 68 RRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR-AVPTDEARAFAEK------- 139 (199)
T ss_dssp TCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC-CSCHHHHHHHHHH-------
T ss_pred hhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccccc-CcCHHHHHHHHHH-------
Confidence 877788889999999999988743322 2334444433 368999999999986432 1122333333322
Q ss_pred CCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 242 CDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 242 ~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
..++++.+||+++. ++..+++.|.+.+.
T Consensus 140 ~~~~~~d~Sal~~~----------~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 140 NNLSFIETSALDST----------NVEEAFKNILTEIY 167 (199)
T ss_dssp TTCEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 23578999999998 88999998887663
No 168
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.59 E-value=3.8e-15 Score=147.99 Aligned_cols=146 Identities=18% Similarity=0.218 Sum_probs=90.8
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
...++|+++|++|+|||||+++|+........... ..++. ..+....++||||||+.+|.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~---------------~~~~~-----~~~~~~~~~l~Dt~G~~~~~ 69 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ---------------EPLSA-----ADYDGSGVTLVDFPGHVKLR 69 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCS---------------SCEEE-----TTGGGSSCEEEECCCCGGGT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeec---------------CceEE-----EEeeCceEEEEECCCcHHHH
Confidence 45789999999999999999999986542110000 01111 11256789999999999999
Q ss_pred HHHHHHHhh----cceEEEEeeCC-C-CCchhhHHHHHHHHH-------cCCEEEEEEeecCCCCCCc-ccchhhHHHHH
Q 005713 167 GEVERILNM----VEGVLLVVDSV-E-GPMPQTRFVLKKALE-------FGHAVVVVVNKIDRPSARP-DYVINSTFELF 232 (681)
Q Consensus 167 ~e~~~~l~~----aD~~llVvDa~-~-g~~~qt~~~l~~~~~-------~gip~ivviNKiD~~~~~~-~~~~~ei~~~~ 232 (681)
..+..+++. +|++|+|+|++ + ........++..+.. .++|+++|+||+|+...+. ..+.+.+.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~ 149 (218)
T 1nrj_B 70 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEI 149 (218)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHH
Confidence 988888887 99999999998 2 223333344433332 4799999999999986543 22222333322
Q ss_pred HHhhcccccCCceEEEeecccCC
Q 005713 233 IELNATDEQCDFQAIYASGIQGK 255 (681)
Q Consensus 233 ~~l~~~~~~~~~pvi~~SA~~G~ 255 (681)
..+... ...+++++||++|.
T Consensus 150 ~~~~~~---~~~~~~~~Sa~~~~ 169 (218)
T 1nrj_B 150 QKVIER---RKKSLNEVERKINE 169 (218)
T ss_dssp HHHHHH---HHHHHHC-------
T ss_pred HHHHHH---Hhcccccccccccc
Confidence 222211 13468999999987
No 169
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.59 E-value=8e-15 Score=153.10 Aligned_cols=176 Identities=12% Similarity=0.161 Sum_probs=110.0
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccc-----cceeeee------------------eccch----hh------
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN-----QTVKERI------------------MDSND----LE------ 133 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~-----~~~~~~~------------------~D~~~----~E------ 133 (681)
...++|+|+|.+++|||||+++|++........ .....++ .+... .+
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 356799999999999999999999876531110 0100000 11110 00
Q ss_pred --cccceeEEeeeeEEeeC-CeEEEEEeCCCcc-------------chhHHHHHHHhhcceEE-EEeeCCCCCchhhH-H
Q 005713 134 --RERGITILSKNTSITYN-DTKINIIDTPGHS-------------DFGGEVERILNMVEGVL-LVVDSVEGPMPQTR-F 195 (681)
Q Consensus 134 --~erGiTi~~~~~~~~~~-~~~i~iiDTPGh~-------------df~~e~~~~l~~aD~~l-lVvDa~~g~~~qt~-~ 195 (681)
...|++.......+... ...++||||||+. .+...+..+++.++.+| +|+|+..+...+.. .
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 00233222222223333 4789999999974 35566777888888776 68999988777664 4
Q ss_pred HHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHH
Q 005713 196 VLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIM 275 (681)
Q Consensus 196 ~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~ 275 (681)
+++.+...+.|+++|+||+|+.+.+. .. .+.+............+++++||++|. |+..|++.+.
T Consensus 184 ~~~~~~~~~~~~i~V~NK~Dl~~~~~-~~----~~~~~~~~~~~~~~~~~v~~~SA~~~~----------gi~~l~~~l~ 248 (299)
T 2aka_B 184 IAKEVDPQGQRTIGVITKLDLMDEGT-DA----RDVLENKLLPLRRGYIGVVNRSQKDID----------GKKDITAALA 248 (299)
T ss_dssp HHHHHCTTCSSEEEEEECGGGSCTTC-CC----HHHHTTCSSCCTTCEEECCCCCCBCTT----------SCBCHHHHHH
T ss_pred HHHHhCCCCCeEEEEEEccccCCCCc-hH----HHHHhCCcCcCCCCcEEEECCChhhcc----------ccccHHHHHH
Confidence 66777677899999999999875431 11 122211000000012478999999999 8888888887
Q ss_pred hh
Q 005713 276 RC 277 (681)
Q Consensus 276 ~~ 277 (681)
+.
T Consensus 249 ~~ 250 (299)
T 2aka_B 249 AE 250 (299)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 170
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.58 E-value=2.4e-15 Score=162.04 Aligned_cols=197 Identities=18% Similarity=0.235 Sum_probs=99.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCe--EEEEEeCCCccch
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDT--KINIIDTPGHSDF 165 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~--~i~iiDTPGh~df 165 (681)
...+|+|+|++|+|||||+++|+....... ..++....+...++++......+.+.+. .++||||||+.++
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~-------~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~ 108 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPE-------RVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDA 108 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC----------------------CEEEEEEEEC----CEEEEEEEEC-------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCC-------CcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccccc
Confidence 457899999999999999999876422111 1111112222334444444444455544 7999999999443
Q ss_pred -------hHHHH-------HHHhhc-------------ceEEEEeeC-CCCCchhhHHHHHHHHHcCCEEEEEEeecCCC
Q 005713 166 -------GGEVE-------RILNMV-------------EGVLLVVDS-VEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (681)
Q Consensus 166 -------~~e~~-------~~l~~a-------------D~~llVvDa-~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~ 217 (681)
...+. .+++.+ |+++++|+. ..+.......+++.+ ..++|+|+|+||+|+.
T Consensus 109 ~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~piIlV~NK~Dl~ 187 (361)
T 2qag_A 109 INCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVNIVPVIAKADTL 187 (361)
T ss_dssp -------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SCEEEEEECCSSS
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCCEEEEEECCCCC
Confidence 33333 455543 357777776 455555555555554 4679999999999986
Q ss_pred CCCcccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCccccCCceEEEEEEee
Q 005713 218 SARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLE 297 (681)
Q Consensus 218 ~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~~~~~p~~~~V~~~~ 297 (681)
..+ ++......+.......+++++++||++|.+ . ..+..+++.|.+.+|.+....+.++.+
T Consensus 188 ~~~------ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~------e~~~~l~~~i~~~ip~~vv~s~~~~~~------ 248 (361)
T 2qag_A 188 TLK------ERERLKKRILDEIEEHNIKIYHLPDAESDE-D------EDFKEQTRLLKASIPFSVVGSNQLIEA------ 248 (361)
T ss_dssp CHH------HHHHHHHHHHHHTTCC-CCSCCCC----------------CHHHHHHHHHTCSCEECCCSEEC--------
T ss_pred CHH------HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-c------hhHHHHHHHHHhcCCCCEeCCCCcccc------
Confidence 532 122211122222233467899999999984 1 256778888888888765544443322
Q ss_pred ecCCCceEEEEEeec-ccc
Q 005713 298 YDEHKGRIAIGRLHA-GVL 315 (681)
Q Consensus 298 ~d~~~G~v~~grV~s-G~l 315 (681)
.|+.+.||.|. |.+
T Consensus 249 ----~g~~~~gr~ypwg~~ 263 (361)
T 2qag_A 249 ----KGKKVRGRLYPWGVV 263 (361)
T ss_dssp --------CEEECCSSCCE
T ss_pred ----CCeEEEEEecCCceE
Confidence 46666777764 443
No 171
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.58 E-value=7.4e-15 Score=154.59 Aligned_cols=163 Identities=13% Similarity=0.138 Sum_probs=105.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH---
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG--- 167 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~--- 167 (681)
+|+++|..|+|||||+.++..+... ...... +.|+......+. ...+++||||||+++|..
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~-~~~~~~--------------~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l 64 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQP-LDTLYL--------------ESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSY 64 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCS-GGGTTC--------------CCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCC-Ccccee--------------cCeeeeeeEEEc-cEEEEEEEECCCchhccchhh
Confidence 5899999999999999987654221 100001 233333333332 347899999999999964
Q ss_pred HHHHHHhhcceEEEEeeCCCCCchhhHHHHHH----HHH--cCCEEEEEEeecCCCCCCc-ccchhhHHHHHHHhhccc-
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMPQTRFVLKK----ALE--FGHAVVVVVNKIDRPSARP-DYVINSTFELFIELNATD- 239 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~----~~~--~gip~ivviNKiD~~~~~~-~~~~~ei~~~~~~l~~~~- 239 (681)
....+++.++++|+|+|+++. ......+|.. +.. .++|+++|+||+|+...+. .+...++...-.+--+..
T Consensus 65 ~~~~yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~ 143 (331)
T 3r7w_B 65 DSERLFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELG 143 (331)
T ss_dssp HHHHHHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSS
T ss_pred hhhhhccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhc
Confidence 467899999999999999887 4444444433 222 3689999999999975431 111222322211111111
Q ss_pred -ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 240 -EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 240 -~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
+..+++++.+||++ . ++.+.|..+++.+.+.
T Consensus 144 ~~~~~i~f~eTSAkd-~----------nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 144 LDGVQVSFYLTSIFD-H----------SIYEAFSRIVQKLIPE 175 (331)
T ss_dssp CSCCCEEEECCCSSS-S----------HHHHHHHHHHTTSSTT
T ss_pred ccccCceEEEeccCC-C----------cHHHHHHHHHHHHHhh
Confidence 12578999999986 4 7888888888776543
No 172
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.57 E-value=1.7e-15 Score=161.74 Aligned_cols=156 Identities=17% Similarity=0.283 Sum_probs=107.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC-eEEEEEeCCCccc---
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND-TKINIIDTPGHSD--- 164 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-~~i~iiDTPGh~d--- 164 (681)
+.+|+++|.+++|||||+++|+.....+... ...|+......+.+.+ ..+.||||||+.+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~~i~~~----------------~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~ 221 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKPKIADY----------------HFTTLVPNLGMVETDDGRSFVMADLPGLIEGAH 221 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECCEESST----------------TSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTT
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCCccccC----------------CccccCceEEEEEeCCCceEEEecCCCCccccc
Confidence 5689999999999999999997653221111 1234444444566665 7899999999743
Q ss_pred ----hhHHHHHHHhhcceEEEEeeCCC----CCchhhHHHHHHHHHc-----CCEEEEEEeecCCCCCCcccchhhHHHH
Q 005713 165 ----FGGEVERILNMVEGVLLVVDSVE----GPMPQTRFVLKKALEF-----GHAVVVVVNKIDRPSARPDYVINSTFEL 231 (681)
Q Consensus 165 ----f~~e~~~~l~~aD~~llVvDa~~----g~~~qt~~~l~~~~~~-----gip~ivviNKiD~~~~~~~~~~~ei~~~ 231 (681)
+.....+.+..+|++|+|+|+++ ........++..+..+ ++|+++|+||+|+...+ +.+..+
T Consensus 222 ~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~-----e~~~~l 296 (342)
T 1lnz_A 222 QGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA-----ENLEAF 296 (342)
T ss_dssp CTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH-----HHHHHH
T ss_pred ccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH-----HHHHHH
Confidence 33444555667999999999975 2333444555555553 68999999999986432 122222
Q ss_pred HHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 232 FIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 232 ~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
...+.. .++++++||+++. |+.+|++.|.+.+..
T Consensus 297 ~~~l~~-----~~~v~~iSA~tg~----------gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 297 KEKLTD-----DYPVFPISAVTRE----------GLRELLFEVANQLEN 330 (342)
T ss_dssp HHHCCS-----CCCBCCCSSCCSS----------TTHHHHHHHHHHHTS
T ss_pred HHHhhc-----CCCEEEEECCCCc----------CHHHHHHHHHHHHhh
Confidence 222221 1579999999999 999999999988754
No 173
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.57 E-value=7.3e-15 Score=158.26 Aligned_cols=165 Identities=22% Similarity=0.251 Sum_probs=106.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc---
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD--- 164 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d--- 164 (681)
.++.|+|+|++|+|||||+++|++...... ...+.|.+.....+.+.+..+.+|||||+.+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~----------------~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp 241 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVD----------------TKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIP 241 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC---------------------------CCSCEEEEEETTEEEEEEECCCBCSSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCcccc----------------CCcccccCCEEEEEEECCEEEEEEeCCCchhcCC
Confidence 466799999999999999999987532111 0114565566667788889999999999722
Q ss_pred ------hhHHHHHHHhhcceEEEEeeCCCCC--ch-hhHHHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHH
Q 005713 165 ------FGGEVERILNMVEGVLLVVDSVEGP--MP-QTRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELF 232 (681)
Q Consensus 165 ------f~~e~~~~l~~aD~~llVvDa~~g~--~~-qt~~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~ 232 (681)
|.. +...+..+|++++|+|+++.. .. +...+...+.. .++|+++|.||+|+.+.........+..+.
T Consensus 242 ~~lve~f~~-tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~ 320 (364)
T 2qtf_A 242 PQIVDAFFV-TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLS 320 (364)
T ss_dssp GGGHHHHHH-HHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHH
Confidence 322 233567899999999998764 22 22222333333 368999999999987543222222222222
Q ss_pred HHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCCCcc
Q 005713 233 IELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRI 283 (681)
Q Consensus 233 ~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p~~ 283 (681)
..+.. ...+++++||++|. |+..|++.|.+.++.|.+
T Consensus 321 ~~l~~----~~~~~~~~SA~~g~----------gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 321 KELYS----PIFDVIPISALKRT----------NLELLRDKIYQLATQLSL 357 (364)
T ss_dssp HHHCS----CEEEEEECBTTTTB----------SHHHHHHHHHHHHHHHC-
T ss_pred HHhcC----CCCcEEEEECCCCc----------CHHHHHHHHHHHhcccCC
Confidence 22211 13468999999999 999999999887765543
No 174
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.57 E-value=2.7e-14 Score=146.97 Aligned_cols=116 Identities=18% Similarity=0.179 Sum_probs=85.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
+..+|+++|++|+|||||+++|++........ ..+.|+......+.+++..++||||||+.+|..
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~ 99 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP---------------FQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGY 99 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCS---------------SCC-CCCCEEEEEEETTEEEEEEECCCSEETTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCC---------------CCCcceeeEEEEEEECCeeEEEEECCCCCCccc
Confidence 56899999999999999999999865432211 125566667777888999999999999998864
Q ss_pred HHHHHHh---------hcceEEEEeeCCC-CCchhhHHHHHHHHHc-C----CEEEEEEeecCCCC
Q 005713 168 EVERILN---------MVEGVLLVVDSVE-GPMPQTRFVLKKALEF-G----HAVVVVVNKIDRPS 218 (681)
Q Consensus 168 e~~~~l~---------~aD~~llVvDa~~-g~~~qt~~~l~~~~~~-g----ip~ivviNKiD~~~ 218 (681)
....+++ .+|++|+|+|... ........++..+.+. + .|+++|+||+|+..
T Consensus 100 ~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 100 VNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp ECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred chHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 4444333 6899999987655 3444445666666553 2 48999999999853
No 175
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.56 E-value=5e-15 Score=149.97 Aligned_cols=166 Identities=16% Similarity=0.165 Sum_probs=99.2
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
....++|+++|++|+|||||+++|++......... ..++|.......+.+.+..++||||||+.+.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~ 91 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTA--------------AKSITKKCEKRSSSWKETELVVVDTPGIFDT 91 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC---------------------CCSCEEEEEEETTEEEEEEECCSCC--
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCC--------------CCceeeeEEEEEEEeCCceEEEEECCCccCC
Confidence 34578999999999999999999998654322111 1256666666778889999999999997543
Q ss_pred -----------hHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHH-----cCCEEEEEEeecCCCCCC-cccch---
Q 005713 166 -----------GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALE-----FGHAVVVVVNKIDRPSAR-PDYVI--- 225 (681)
Q Consensus 166 -----------~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~-----~gip~ivviNKiD~~~~~-~~~~~--- 225 (681)
...+..+.+.+|++|+|+|+.. .......++..+.+ ...|+++|+||+|+...+ .++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~ 170 (239)
T 3lxx_A 92 EVPNAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREA 170 (239)
T ss_dssp ---CHHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------
T ss_pred CCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhc
Confidence 2333333445699999999874 33344444444432 346999999999986432 22222
Q ss_pred -hhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 226 -NSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 226 -~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
+.++++....+. .++++++..+.+ ....++.+||+.+.+.+
T Consensus 171 ~~~l~~l~~~~~~-------~~~~~~~~~~~~-----~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 171 PEDIQDLMDIFGD-------RYCALNNKATGA-----EQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp CHHHHHHHHHHSS-------SEEECCTTCCHH-----HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCC-------EEEEEECCCCcc-----ccHHHHHHHHHHHHHHH
Confidence 234444433332 355555443210 00116788888887665
No 176
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.56 E-value=1.3e-14 Score=141.69 Aligned_cols=158 Identities=19% Similarity=0.239 Sum_probs=108.0
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCccc
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGHSD 164 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh~d 164 (681)
+...+|+++|+.|+|||||+++|++.........+. |.+... ..+.+++ ..+.+|||||+..
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~--------------~~~~~~--~~i~~~g~~~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI--------------GVEFAT--RSIQVDGKTIKAQIWDTAGLER 90 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCC--------------SEEEEE--EEEEETTEEEEEEEEEECSCCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcc--------------ceEEEE--EEEEECCEEEEEEEEECCCCcc
Confidence 346789999999999999999999875543222221 333333 3344444 4567899999999
Q ss_pred hhHHHHHHHhhcceEEEEeeCCCCCch-hhHHHHHHHHH---cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccc
Q 005713 165 FGGEVERILNMVEGVLLVVDSVEGPMP-QTRFVLKKALE---FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDE 240 (681)
Q Consensus 165 f~~e~~~~l~~aD~~llVvDa~~g~~~-qt~~~l~~~~~---~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~ 240 (681)
|...+..+++.+|++++|+|..+.... ....++..+.. .+.|+++++||+|+.+.+ .....+.+.+..+
T Consensus 91 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~-~~~~~~a~~l~~~------ 163 (191)
T 1oix_A 91 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR-AVPTDEARAFAEK------ 163 (191)
T ss_dssp SSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC-CSCHHHHHHHHHH------
T ss_pred hhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc-ccCHHHHHHHHHH------
Confidence 988888888999999999998764322 22234443333 368999999999986432 1122233333322
Q ss_pred cCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 241 QCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 241 ~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
..++++.+||+++. ++..+++.|.+.+
T Consensus 164 -~~~~~ld~Sald~~----------~v~~l~~~l~~~i 190 (191)
T 1oix_A 164 -NGLSFIETSALDST----------NVEAAFQTILTEI 190 (191)
T ss_dssp -TTCEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred -cCCEEEEEeCCCCC----------CHHHHHHHHHHHh
Confidence 23578999999998 8999999987653
No 177
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.56 E-value=1.1e-14 Score=153.54 Aligned_cols=181 Identities=14% Similarity=0.165 Sum_probs=107.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCcccc-------c---cceee---------------------eeeccc------
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRD-------N---QTVKE---------------------RIMDSN------ 130 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~-------~---~~~~~---------------------~~~D~~------ 130 (681)
..++|+|+|++++|||||+++|++....... + ..... .+.|..
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 4678999999999999999999987652111 1 00000 000000
Q ss_pred hhhccc------ceeEEeeeeEEee-CCeEEEEEeCCCccc-------------hhHHHHHHHhhcceEEEEeeC-CCCC
Q 005713 131 DLERER------GITILSKNTSITY-NDTKINIIDTPGHSD-------------FGGEVERILNMVEGVLLVVDS-VEGP 189 (681)
Q Consensus 131 ~~E~er------GiTi~~~~~~~~~-~~~~i~iiDTPGh~d-------------f~~e~~~~l~~aD~~llVvDa-~~g~ 189 (681)
..+.++ |++.......+.. .+..++||||||+.+ +...+..++..+|++|+|+|+ ..+.
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 000000 2222121222222 457899999999864 567778889999999999997 5565
Q ss_pred chhh-HHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcc
Q 005713 190 MPQT-RFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLG 268 (681)
Q Consensus 190 ~~qt-~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~ 268 (681)
..+. ..++..+...+.|+++|+||+|+..... .. .+.+... ...+..+++++|++++.++.. ..|+.
T Consensus 183 ~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~-~~----~~~~~~~---~~~~~~~~~~v~~~sa~~~~~----~~gv~ 250 (315)
T 1jwy_B 183 ANSDALQLAKEVDPEGKRTIGVITKLDLMDKGT-DA----MEVLTGR---VIPLTLGFIGVINRSQEDIIA----KKSIR 250 (315)
T ss_dssp TTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSC-CC----HHHHTTS---SSCCTTCEEECCCCCHHHHSS----SCCHH
T ss_pred hhhHHHHHHHHhCCCCCcEEEEEcCcccCCcch-HH----HHHHhCC---CccCCCCeEEEecCChhhhcc----CCCHH
Confidence 5444 4677777778999999999999875431 11 2222110 011113445555544432110 12889
Q ss_pred hhHHHHHhhCCC
Q 005713 269 PLFESIMRCIPG 280 (681)
Q Consensus 269 ~Ll~~I~~~lp~ 280 (681)
.+++.+.+++|.
T Consensus 251 ~l~~~~~~~~~~ 262 (315)
T 1jwy_B 251 ESLKSEILYFKN 262 (315)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999999888864
No 178
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.53 E-value=3.4e-14 Score=152.85 Aligned_cols=157 Identities=20% Similarity=0.228 Sum_probs=105.9
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
....+|+++|++|+|||||+++|++....... ..+.|.......+.+++..+.+|||||+.++.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~----------------~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 228 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIAS----------------YPFTTRGINVGQFEDGYFRYQIIDTPGLLDRP 228 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEEC----------------CTTCSSCEEEEEEEETTEEEEEEECTTTSSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCC----------------CCCeeeceeEEEEEecCceEEEEeCCCccccc
Confidence 35679999999999999999999865421110 01333333444566678899999999986642
Q ss_pred H---------HHHHHHhhcceEEEEeeCCCCC--c-hhhHHHHHHHHH-c-CCEEEEEEeecCCCCCCcccchhhHHHHH
Q 005713 167 G---------EVERILNMVEGVLLVVDSVEGP--M-PQTRFVLKKALE-F-GHAVVVVVNKIDRPSARPDYVINSTFELF 232 (681)
Q Consensus 167 ~---------e~~~~l~~aD~~llVvDa~~g~--~-~qt~~~l~~~~~-~-gip~ivviNKiD~~~~~~~~~~~ei~~~~ 232 (681)
. .+......+|++|+|+|++... . .....++..+.. . +.|+++|+||+|+.... .++++...+
T Consensus 229 ~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~---~~~~~~~~~ 305 (357)
T 2e87_A 229 ISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEE---NIKRLEKFV 305 (357)
T ss_dssp STTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHH---HHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChH---HHHHHHHHH
Confidence 1 1122234689999999987643 2 223344554443 2 79999999999986432 122333332
Q ss_pred HHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 233 IELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 233 ~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.. ..+|++++||++|. |+++|++.|.+.+.
T Consensus 306 ~~-------~~~~~~~iSA~~g~----------gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 306 KE-------KGLNPIKISALKGT----------GIDLVKEEIIKTLR 335 (357)
T ss_dssp HH-------TTCCCEECBTTTTB----------THHHHHHHHHHHHH
T ss_pred Hh-------cCCCeEEEeCCCCc----------CHHHHHHHHHHHHH
Confidence 21 24679999999999 99999999988763
No 179
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.52 E-value=3.1e-13 Score=139.52 Aligned_cols=117 Identities=18% Similarity=0.180 Sum_probs=82.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh-
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG- 166 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~- 166 (681)
...+|+++|++|+|||||+++|++........ ..+.|.......+.+++..++||||||+.+|.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~ 102 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISP---------------FQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGY 102 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS---------------SSCCCSSCEEEEEEETTEEEEEEECCCSEETTE
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccC---------------CCCcceeeEEEEEeeCCeEEEEEECCCCCCCcc
Confidence 46899999999999999999999765422111 11344444455677888999999999998775
Q ss_pred --HHHHHHH------hhcceEEEEeeCCC-CCchhhHHHHHHHHHc-C----CEEEEEEeecCCCCC
Q 005713 167 --GEVERIL------NMVEGVLLVVDSVE-GPMPQTRFVLKKALEF-G----HAVVVVVNKIDRPSA 219 (681)
Q Consensus 167 --~e~~~~l------~~aD~~llVvDa~~-g~~~qt~~~l~~~~~~-g----ip~ivviNKiD~~~~ 219 (681)
......+ +.+|++|+|+|... ........++..+... + .|+++|+||+|+...
T Consensus 103 ~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 103 INDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp ECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred chHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 2222222 26899999988754 3444555666666543 4 699999999998643
No 180
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.51 E-value=4.7e-14 Score=139.09 Aligned_cols=162 Identities=17% Similarity=0.240 Sum_probs=103.4
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc--
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD-- 164 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d-- 164 (681)
....+|+++|++|+|||||+++|++..+..... ...|.|..... +.+.+ .+.+|||||+.+
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~--------------~~~G~~~~~~~--~~~~~-~~~l~Dt~G~~~~~ 86 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS--------------KTPGRTQLINL--FEVAD-GKRLVDLPGYGYAE 86 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC---------------------------CCEEE--EEEET-TEEEEECCCCC---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcccccc--------------CCCccceeeEE--EEecC-CEEEEECcCCcccc
Confidence 345789999999999999999997653211000 01244433222 23333 688999999853
Q ss_pred --------hhHHHHHHH---hhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCc-ccchhhHHHHH
Q 005713 165 --------FGGEVERIL---NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARP-DYVINSTFELF 232 (681)
Q Consensus 165 --------f~~e~~~~l---~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~-~~~~~ei~~~~ 232 (681)
|...+..++ ..+|++++|+|+..+...........+...++|+++|.||+|+..... ...+..+..++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~ 166 (210)
T 1pui_A 87 VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAV 166 (210)
T ss_dssp ---CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHH
Confidence 333333444 478999999999887666555666667778999999999999764321 11123333333
Q ss_pred HHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 233 IELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 233 ~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
.+. ...++++++||+++. ++..+++.|.+.++.
T Consensus 167 ~~~-----~~~~~~~~~Sal~~~----------~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 167 LAF-----NGDVQVETFSSLKKQ----------GVDKLRQKLDTWFSE 199 (210)
T ss_dssp GGG-----CSCEEEEECBTTTTB----------SHHHHHHHHHHHHC-
T ss_pred Hhc-----CCCCceEEEeecCCC----------CHHHHHHHHHHHHhh
Confidence 221 124578999999998 899999999887643
No 181
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.48 E-value=1.4e-13 Score=160.26 Aligned_cols=118 Identities=22% Similarity=0.239 Sum_probs=80.8
Q ss_pred eEEEEEeCCCccc---hhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHH-HHHHcCCEEEEEEeecCCCCCC---ccc-
Q 005713 152 TKINIIDTPGHSD---FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLK-KALEFGHAVVVVVNKIDRPSAR---PDY- 223 (681)
Q Consensus 152 ~~i~iiDTPGh~d---f~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~-~~~~~gip~ivviNKiD~~~~~---~~~- 223 (681)
..++||||||+.+ ....+..++..+|++|+|+|++.+........|. .+...+.|+++|+||+|+.... .++
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~ 253 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDV 253 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCH
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccccccChhhH
Confidence 4699999999765 4456667889999999999999887777776664 4555688999999999986432 111
Q ss_pred -----chhhHHHHHHH-hhcccc-----cCCceEEEeecc--------------cCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 224 -----VINSTFELFIE-LNATDE-----QCDFQAIYASGI--------------QGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 224 -----~~~ei~~~~~~-l~~~~~-----~~~~pvi~~SA~--------------~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
+.+.+...+.. +..... ....+++++||+ +|. |+..|++.+.+.+
T Consensus 254 e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~----------Gi~~L~~~L~~~l 323 (695)
T 2j69_A 254 EELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGT----------GFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTS----------SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhcc----------CHHHHHHHHHHHH
Confidence 11123222211 111100 123479999999 666 8899999888776
Q ss_pred C
Q 005713 279 P 279 (681)
Q Consensus 279 p 279 (681)
.
T Consensus 324 ~ 324 (695)
T 2j69_A 324 T 324 (695)
T ss_dssp H
T ss_pred H
Confidence 4
No 182
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.46 E-value=6.9e-14 Score=149.56 Aligned_cols=178 Identities=13% Similarity=0.073 Sum_probs=101.6
Q ss_pred cCCCccEEEEEeCCCCcHHHHHHHHHhhcCccc--------ccccee---eeeeccchhhc----ccceeEEee------
Q 005713 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFR--------DNQTVK---ERIMDSNDLER----ERGITILSK------ 143 (681)
Q Consensus 85 ~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~--------~~~~~~---~~~~D~~~~E~----erGiTi~~~------ 143 (681)
...+...|+++|++|+|||||+++|+....... ...... ..+.|....+. .++.-....
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~ 131 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLG 131 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccc
Confidence 345678899999999999999999975421100 000000 00111111110 111110000
Q ss_pred ---------eeEEeeCCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeec
Q 005713 144 ---------NTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKI 214 (681)
Q Consensus 144 ---------~~~~~~~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKi 214 (681)
...+.+.++.++||||||+.++... +...+|++|+|+|+..+...+.... ...++|.++|+||+
T Consensus 132 g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~ 204 (341)
T 2p67_A 132 GASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKD 204 (341)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCC
T ss_pred hhHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECC
Confidence 0012367889999999999887654 4689999999999976543222111 11357889999999
Q ss_pred CCCCC-CcccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 215 DRPSA-RPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 215 D~~~~-~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
|+.+. +.....+++++.+..+.........+++++||++|. |+..|++.|.+.++
T Consensus 205 Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~----------gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 205 DGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKR----------GIDEIWHAIIDFKT 260 (341)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTB----------SHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCC----------CHHHHHHHHHHHHH
Confidence 98753 222333344443332221111123579999999999 99999999987653
No 183
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.46 E-value=6e-14 Score=150.84 Aligned_cols=173 Identities=17% Similarity=0.168 Sum_probs=105.4
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhh------------------cccceeEEeeee--
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLE------------------RERGITILSKNT-- 145 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E------------------~erGiTi~~~~~-- 145 (681)
....++|+|+|++|+|||||+++|.......... + .++|.++.. ...+..+.....
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~k--V--~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~ 151 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHR--V--AVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSG 151 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCC--E--EEEEEC----------------CHHHHTCTTEEEECCC--C
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCc--e--EEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCc
Confidence 4467899999999999999999997652111000 0 011111000 011222211110
Q ss_pred --------------EEeeCCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEE
Q 005713 146 --------------SITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVV 211 (681)
Q Consensus 146 --------------~~~~~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivvi 211 (681)
.+.+.++.+.||||||... .....+..+|.+|+|+|+..+...+... . .-..+|.++|+
T Consensus 152 ~~~~~~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~--~--~~~~~p~ivVl 224 (355)
T 3p32_A 152 TLGGVTRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK--K--GVLELADIVVV 224 (355)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC--T--TSGGGCSEEEE
T ss_pred cccchhHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH--H--hHhhcCCEEEE
Confidence 1234678999999999644 2334568999999999987654433221 0 11246899999
Q ss_pred eecCCCCC-CcccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 212 NKIDRPSA-RPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 212 NKiD~~~~-~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
||+|+... .......++...+..+.........|++++||++|. |+..|++.|.++++
T Consensus 225 NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~----------Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 225 NKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGR----------GLAELWDTVERHRQ 283 (355)
T ss_dssp ECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTB----------SHHHHHHHHHHHHH
T ss_pred ECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCC----------CHHHHHHHHHHHHH
Confidence 99998632 122233344444333332222335689999999999 99999999988775
No 184
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.46 E-value=8.5e-14 Score=135.19 Aligned_cols=124 Identities=23% Similarity=0.335 Sum_probs=81.2
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
....+|+++|+.|+|||||+++|+.......... ...+++ ..+.+..+.||||||+.+|.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~-------------~~~~~~-------~~~~~~~~~l~Dt~G~~~~~ 105 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS-------------QEPLSA-------ADYDGSGVTLVDFPGHVKLR 105 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC--------------------------------CCCCTTCSEEEETTCCBSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCccccc-------------CCCcee-------eeecCCeEEEEECCCCchHH
Confidence 4568999999999999999999998653210000 000111 12266789999999999998
Q ss_pred HHHHHHHhh----cceEEEEeeCCCCC--chhhHHHHHHHHH-------cCCEEEEEEeecCCCCCC-cccchhhHHH
Q 005713 167 GEVERILNM----VEGVLLVVDSVEGP--MPQTRFVLKKALE-------FGHAVVVVVNKIDRPSAR-PDYVINSTFE 230 (681)
Q Consensus 167 ~e~~~~l~~----aD~~llVvDa~~g~--~~qt~~~l~~~~~-------~gip~ivviNKiD~~~~~-~~~~~~ei~~ 230 (681)
..+..++.. +|++|+|+|++... ......++..+.. .++|+++|+||+|+...+ ..++.+.+..
T Consensus 106 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~ 183 (193)
T 2ged_A 106 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALES 183 (193)
T ss_dssp CCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHH
Confidence 777777766 89999999998221 1222233333322 379999999999997653 3333344433
No 185
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.45 E-value=2.6e-14 Score=146.48 Aligned_cols=85 Identities=20% Similarity=0.330 Sum_probs=57.7
Q ss_pred hcceEEEEeeCCCC---CchhhHHHHHHHHH----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceEE
Q 005713 175 MVEGVLLVVDSVEG---PMPQTRFVLKKALE----FGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAI 247 (681)
Q Consensus 175 ~aD~~llVvDa~~g---~~~qt~~~l~~~~~----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi 247 (681)
.+|++|+|+|+++. .......++..+.. .++|+++|+||+|+...+ .+++...+... ...++++
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~---~v~~~~~~~~~------~~~~~~~ 232 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER---YIRDAHTFALS------KKNLQVV 232 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHH---HHHHHHHHHHT------SSSCCEE
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccH---HHHHHHHHHHh------cCCCeEE
Confidence 58999999999874 33333344444433 479999999999985422 12333332221 1246899
Q ss_pred EeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 248 YASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 248 ~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
++||++|. |+.++++.|.+.+
T Consensus 233 e~SAk~g~----------gv~elf~~l~~~l 253 (255)
T 3c5h_A 233 ETSARSNV----------NVDLAFSTLVQLI 253 (255)
T ss_dssp ECBTTTTB----------SHHHHHHHHHHHH
T ss_pred EEECCCCC----------CHHHHHHHHHHHh
Confidence 99999999 9999999998754
No 186
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.42 E-value=2.5e-13 Score=145.94 Aligned_cols=174 Identities=13% Similarity=0.173 Sum_probs=105.1
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccc-----eeeee------------------eccchhh--------c-
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQT-----VKERI------------------MDSNDLE--------R- 134 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~-----~~~~~------------------~D~~~~E--------~- 134 (681)
....+|+|+|.+++|||||+++|++........+. ...+. .+..... +
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34678999999999999999999987543111100 00000 1111100 0
Q ss_pred ---ccceeEEeeeeEEeeC-CeEEEEEeCCCcc-------------chhHHHHHHHhhcc-eEEEEeeCCCCCchhhH-H
Q 005713 135 ---ERGITILSKNTSITYN-DTKINIIDTPGHS-------------DFGGEVERILNMVE-GVLLVVDSVEGPMPQTR-F 195 (681)
Q Consensus 135 ---erGiTi~~~~~~~~~~-~~~i~iiDTPGh~-------------df~~e~~~~l~~aD-~~llVvDa~~g~~~qt~-~ 195 (681)
..|+........+... ...++||||||.. .+...+..++..++ .+|+|+|+..+...+.. .
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 0344333323333443 4789999999963 34455666675554 55567777776666654 3
Q ss_pred HHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCC-ceEEEeecccCCCCCCCCCCCCCcchhHHHH
Q 005713 196 VLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCD-FQAIYASGIQGKAGLSPDNLADDLGPLFESI 274 (681)
Q Consensus 196 ~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~-~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I 274 (681)
+++.+...+.|+++|+||+|+.+... .. .+.+... ....... ++++++||++|. |+..|++.+
T Consensus 189 i~~~~~~~~~~~i~V~NK~Dl~~~~~-~~----~~~~~~~-~~~l~~~~~~v~~~SA~~~~----------~i~~l~~~l 252 (353)
T 2x2e_A 189 VAKEVDPQGQRTIGVITKLDLMDEGT-DA----RDVLENK-LLPLRRGYIGVVNRSQKDID----------GKKDITAAL 252 (353)
T ss_dssp HHHHHCTTCTTEEEEEECGGGSCTTC-CC----HHHHTTC-SSCCTTCEEECCCCCHHHHH----------TTCCHHHHH
T ss_pred HHHHhCcCCCceEEEeccccccCcch-hH----HHHHhCC-cccccCCceEEEeCCccccc----------ccccHHHHH
Confidence 66777677899999999999875431 11 1221110 0011112 468899999998 778888887
Q ss_pred Hh
Q 005713 275 MR 276 (681)
Q Consensus 275 ~~ 276 (681)
.+
T Consensus 253 ~~ 254 (353)
T 2x2e_A 253 AA 254 (353)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 187
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.38 E-value=1.8e-13 Score=149.11 Aligned_cols=90 Identities=19% Similarity=0.179 Sum_probs=46.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccc-cccceeeeeeccchhhcccceeEEeeee---E----------EeeC---Ce
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFR-DNQTVKERIMDSNDLERERGITILSKNT---S----------ITYN---DT 152 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~-~~~~~~~~~~D~~~~E~erGiTi~~~~~---~----------~~~~---~~ 152 (681)
.+|+|+|.+|+|||||+++|++...... .+.+. .+...|+....... . ..++ ..
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT---------~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~ 71 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTT---------IEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALI 71 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC-----------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcc---------cCCceEEEeeccCCchHHhhhhcccccccccCCcceE
Confidence 3799999999999999999997642111 11110 01111211000000 0 0112 36
Q ss_pred EEEEEeCCCccchhH----HHH---HHHhhcceEEEEeeCCCC
Q 005713 153 KINIIDTPGHSDFGG----EVE---RILNMVEGVLLVVDSVEG 188 (681)
Q Consensus 153 ~i~iiDTPGh~df~~----e~~---~~l~~aD~~llVvDa~~g 188 (681)
.++||||||+.++.. ... .+++.+|++++|+|++++
T Consensus 72 ~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 72 PVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred EEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 799999999865321 111 346889999999999875
No 188
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.36 E-value=3.2e-13 Score=134.39 Aligned_cols=170 Identities=16% Similarity=0.116 Sum_probs=102.0
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeee---eeccchhhcccceeEEe-ee---eEE----------ee
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKER---IMDSNDLERERGITILS-KN---TSI----------TY 149 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~---~~D~~~~E~erGiTi~~-~~---~~~----------~~ 149 (681)
...++|+++|++|+|||||+++|+...........+... -.|....+ ..|+++.. .. ..+ .+
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVR-RFGIKAEAISTGKECHLDAHMIYHRLKKF 106 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHH-TTTCEEEECCCTTCSSCCHHHHHTTGGGG
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHH-hCCCcEEEecCCceeecccHHHHHHHHhc
Confidence 357899999999999999999999874322111111100 01111111 12433211 11 111 34
Q ss_pred CCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHH
Q 005713 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTF 229 (681)
Q Consensus 150 ~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~ 229 (681)
.+..+.||||+|+.+.... +....+.+++|+|+..+... .+......+.|.++|+||+|+.+.. ....+++.
T Consensus 107 ~~~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~~~~-~~~~~~~~ 178 (221)
T 2wsm_A 107 SDCDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALAEAV-GADVEKMK 178 (221)
T ss_dssp TTCSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGHHHH-TCCHHHHH
T ss_pred CCCCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCCcch-hhHHHHHH
Confidence 5678999999995221110 01246789999999887432 2233334578999999999985321 01233444
Q ss_pred HHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 230 ELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 230 ~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
+.+..+. ...+++++||++|. |+..+++.|.+.+..
T Consensus 179 ~~~~~~~-----~~~~i~~~Sa~~g~----------gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 179 ADAKLIN-----PRAKIIEMDLKTGK----------GFEEWIDFLRGILNV 214 (221)
T ss_dssp HHHHHHC-----TTSEEEECBTTTTB----------THHHHHHHHHHHHC-
T ss_pred HHHHHhC-----CCCeEEEeecCCCC----------CHHHHHHHHHHHHHH
Confidence 4443332 13589999999999 999999999887643
No 189
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.34 E-value=1.8e-12 Score=139.58 Aligned_cols=160 Identities=14% Similarity=0.201 Sum_probs=97.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCcccccccee------------------eee--------eccchhhc-------
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK------------------ERI--------MDSNDLER------- 134 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~------------------~~~--------~D~~~~E~------- 134 (681)
..+.|+|+|+.|+|||||+++|++..+.....+.+. ..+ .|......
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 466999999999999999999998654222211110 000 00000000
Q ss_pred ---ccceeEEeeeeEE--ee-CCeEEEEEeCCCccch-------------hHHHHHHHhhcceEEEEeeCCC-CC-chhh
Q 005713 135 ---ERGITILSKNTSI--TY-NDTKINIIDTPGHSDF-------------GGEVERILNMVEGVLLVVDSVE-GP-MPQT 193 (681)
Q Consensus 135 ---erGiTi~~~~~~~--~~-~~~~i~iiDTPGh~df-------------~~e~~~~l~~aD~~llVvDa~~-g~-~~qt 193 (681)
..+..+......+ .. ....++||||||..++ ...+..+++.+|++|+|+|+.. .. ....
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 0111222222222 22 2468999999999887 6677788999999999998653 22 2333
Q ss_pred HHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceEEEeecccCC
Q 005713 194 RFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGK 255 (681)
Q Consensus 194 ~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~ 255 (681)
..+++.+...+.|+|+|+||+|+..... .. .+.+.. .......+++.+|++++.
T Consensus 193 ~~l~~~~~~~~~~~i~V~nK~Dl~~~~~-~~----~~~~~~---~~~~~~~~~~~v~~~s~~ 246 (360)
T 3t34_A 193 IKISREVDPSGDRTFGVLTKIDLMDKGT-DA----VEILEG---RSFKLKYPWVGVVNRSQA 246 (360)
T ss_dssp HHHHHHSCTTCTTEEEEEECGGGCCTTC-CS----HHHHTT---SSSCCSSCCEEECCCCHH
T ss_pred HHHHHHhcccCCCEEEEEeCCccCCCcc-cH----HHHHcC---ccccccCCeEEEEECChH
Confidence 4555555566889999999999875431 11 122211 223445789999999887
No 190
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.32 E-value=2.4e-12 Score=145.94 Aligned_cols=132 Identities=19% Similarity=0.226 Sum_probs=89.8
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCc---cc-cccceee-eeeccchhhcccceeE------------------Eee
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKV---FR-DNQTVKE-RIMDSNDLERERGITI------------------LSK 143 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~---~~-~~~~~~~-~~~D~~~~E~erGiTi------------------~~~ 143 (681)
...++|+|+|+.|+|||||+|+|++.... .. ...+... .+......+...|.++ ...
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45689999999999999999999987642 11 1111110 0111000000011110 011
Q ss_pred eeEEeeCC---eEEEEEeCCCccc-----------hhHHHHHHHhhcceEEEEeeCCC-CCchhhHHHHHHHHHcCCEEE
Q 005713 144 NTSITYND---TKINIIDTPGHSD-----------FGGEVERILNMVEGVLLVVDSVE-GPMPQTRFVLKKALEFGHAVV 208 (681)
Q Consensus 144 ~~~~~~~~---~~i~iiDTPGh~d-----------f~~e~~~~l~~aD~~llVvDa~~-g~~~qt~~~l~~~~~~gip~i 208 (681)
...+.+.+ ..++||||||+.+ |...+..++..+|++|+|+|+.+ +...++..++..+...+.|++
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvi 222 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIR 222 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEE
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEE
Confidence 12222332 4789999999976 77788889999999999999988 678888888888888889999
Q ss_pred EEEeecCCCC
Q 005713 209 VVVNKIDRPS 218 (681)
Q Consensus 209 vviNKiD~~~ 218 (681)
+|+||+|+..
T Consensus 223 lVlNK~Dl~~ 232 (550)
T 2qpt_A 223 VVLNKADMVE 232 (550)
T ss_dssp EEEECGGGSC
T ss_pred EEEECCCccC
Confidence 9999999874
No 191
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.32 E-value=6.8e-12 Score=145.47 Aligned_cols=173 Identities=14% Similarity=0.194 Sum_probs=109.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCcccccccee---------------e--------eeeccchh----h-------
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVK---------------E--------RIMDSNDL----E------- 133 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~---------------~--------~~~D~~~~----E------- 133 (681)
..++|+|+|..++|||||+|+|++........+... . .+.|.... +
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 578999999999999999999998654221111000 0 01111110 0
Q ss_pred -cccceeEEeeeeEEeeCC-eEEEEEeCCCccc-------------hhHHHHHHH-hhcceEEEEeeCCCCCchhhH-HH
Q 005713 134 -RERGITILSKNTSITYND-TKINIIDTPGHSD-------------FGGEVERIL-NMVEGVLLVVDSVEGPMPQTR-FV 196 (681)
Q Consensus 134 -~erGiTi~~~~~~~~~~~-~~i~iiDTPGh~d-------------f~~e~~~~l-~~aD~~llVvDa~~g~~~qt~-~~ 196 (681)
...|++-......+.+.+ ..+.||||||... +...+..++ ..+|.+|+|+|+..+...+.. .+
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 012333223333344443 5799999999644 233444455 468999999999998877776 68
Q ss_pred HHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccC-CceEEEeecccCCCCCCCCCCCCCcchhHHHHH
Q 005713 197 LKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQC-DFQAIYASGIQGKAGLSPDNLADDLGPLFESIM 275 (681)
Q Consensus 197 l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~-~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~ 275 (681)
+..+...+.|+|+|+||+|+...... . .+.... ....... ..+++++||++|. |+..|++.+.
T Consensus 210 l~~L~~~g~pvIlVlNKiDlv~~~~~--~---~~il~~-~~~~l~lg~~~VV~iSA~~G~----------GvdeL~eaI~ 273 (772)
T 3zvr_A 210 AKEVDPQGQRTIGVITKLDLMDEGTD--A---RDVLEN-KLLPLRRGYIGVVNRSQKDID----------GKKDITAALA 273 (772)
T ss_dssp HHHHCTTCSSEEEEEECTTSSCTTCC--S---HHHHTT-CSSCCSSCEEECCCCCCEESS----------SSEEHHHHHH
T ss_pred HHHHHhcCCCEEEEEeCcccCCcchh--h---HHHHHH-HhhhhhccCCceEEecccccc----------cchhHHHHHH
Confidence 88888889999999999998754311 1 111110 0000011 2478999999999 8888888887
Q ss_pred h
Q 005713 276 R 276 (681)
Q Consensus 276 ~ 276 (681)
+
T Consensus 274 ~ 274 (772)
T 3zvr_A 274 A 274 (772)
T ss_dssp H
T ss_pred H
Confidence 6
No 192
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.30 E-value=6.1e-12 Score=137.41 Aligned_cols=156 Identities=17% Similarity=0.274 Sum_probs=101.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC-eEEEEEeCCCccc---
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND-TKINIIDTPGHSD--- 164 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-~~i~iiDTPGh~d--- 164 (681)
...|+|+|++|+|||||+++|+.....+... ...|+......+.+.+ ..++++||||+.+
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~----------------~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~ 220 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHPKIAPY----------------PFTTLSPNLGVVEVSEEERFTLADIPGIIEGAS 220 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCCEECCC----------------TTCSSCCEEEEEECSSSCEEEEEECCCCCCCGG
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCccccCc----------------ccceecceeeEEEecCcceEEEEeccccccchh
Confidence 4569999999999999999997653211110 0122333334455554 7899999999843
Q ss_pred ----hhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHH-----cCCEEEEEEeecCCCCCCcccchhhHHHHHHHh
Q 005713 165 ----FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALE-----FGHAVVVVVNKIDRPSARPDYVINSTFELFIEL 235 (681)
Q Consensus 165 ----f~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~-----~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l 235 (681)
+.....+.+..+|.+|+|+|++.....+...+++.+.. ...|.++|+||+|+... ..++++.+.+..
T Consensus 221 ~~~~L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l~~- 296 (416)
T 1udx_A 221 EGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADALAR- 296 (416)
T ss_dssp GSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHHHHT-
T ss_pred hhhhhhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHHHHh-
Confidence 22333445667999999999872222222223333332 25899999999998643 233333333322
Q ss_pred hcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 236 NATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 236 ~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
..++++++||+++. ++.+|++.|.+.+..
T Consensus 297 ------~g~~vi~iSA~~g~----------gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 297 ------EGLAVLPVSALTGA----------GLPALKEALHALVRS 325 (416)
T ss_dssp ------TTSCEEECCTTTCT----------THHHHHHHHHHHHHT
T ss_pred ------cCCeEEEEECCCcc----------CHHHHHHHHHHHHHh
Confidence 13579999999998 999999999988754
No 193
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.25 E-value=6e-12 Score=134.87 Aligned_cols=114 Identities=17% Similarity=0.131 Sum_probs=66.1
Q ss_pred eCCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCC-cccchhh
Q 005713 149 YNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSAR-PDYVINS 227 (681)
Q Consensus 149 ~~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~-~~~~~~e 227 (681)
..++.+.||||||..+.. ......+|.+++|+|+..+...+.. .. .-...|.++|+||+|+.+.. ......+
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i---~~-~il~~~~ivVlNK~Dl~~~~~~~~~~~~ 236 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGI---KR-GIIEMADLVAVTKSDGDLIVPARRIQAE 236 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGGGHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHh---HH-HHHhcCCEEEEeeecCCCchhHHHHHHH
Confidence 467899999999974322 3456789999999999876432211 11 11357889999999985321 0111122
Q ss_pred HHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 228 TFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 228 i~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
+...+..+.........|++++||++|. |+..|++.|.++++
T Consensus 237 l~~~l~~~~~~a~~~~~~vi~iSA~~g~----------Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 237 YVSALKLLRKRSQVWKPKVIRISARSGE----------GISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHTTCC-----CCCEEEECCTTTCT----------THHHHHHHHHHHHH
T ss_pred HHHHHHhcCccccCCCceEEEEecCCCC----------CHHHHHHHHHHHHH
Confidence 2221111111001124579999999999 99999999987653
No 194
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.16 E-value=2.7e-11 Score=123.74 Aligned_cols=115 Identities=20% Similarity=0.168 Sum_probs=71.4
Q ss_pred CeEEEEEeCCCccchhHH------HHHHHhhcceEEEEeeCCCCCchhhHH-H----HHHHHHcCCEEEEEEeecCCCCC
Q 005713 151 DTKINIIDTPGHSDFGGE------VERILNMVEGVLLVVDSVEGPMPQTRF-V----LKKALEFGHAVVVVVNKIDRPSA 219 (681)
Q Consensus 151 ~~~i~iiDTPGh~df~~e------~~~~l~~aD~~llVvDa~~g~~~qt~~-~----l~~~~~~gip~ivviNKiD~~~~ 219 (681)
++.+.||||||..++... +..++.. +.+|+|+|+.......... . +......++|+++|+||+|+...
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE 186 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCH
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccccc
Confidence 368999999999776432 2234445 7888999987655443322 1 12233457999999999998643
Q ss_pred CcccchhhHHHHHH-------Hhh----------------cccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHh
Q 005713 220 RPDYVINSTFELFI-------ELN----------------ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMR 276 (681)
Q Consensus 220 ~~~~~~~ei~~~~~-------~l~----------------~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~ 276 (681)
.. .+++.+.+. .+. ........+++++||++|. |+..|++.|.+
T Consensus 187 ~~---~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~----------gi~~l~~~i~~ 253 (262)
T 1yrb_A 187 EE---KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTRE----------GFEDLETLAYE 253 (262)
T ss_dssp HH---HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCT----------THHHHHHHHHH
T ss_pred cc---HHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcc----------cHHHHHHHHHH
Confidence 21 111111111 110 0011122478999999999 99999999987
Q ss_pred hCC
Q 005713 277 CIP 279 (681)
Q Consensus 277 ~lp 279 (681)
.++
T Consensus 254 ~~~ 256 (262)
T 1yrb_A 254 HYC 256 (262)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 195
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.13 E-value=1.1e-10 Score=127.45 Aligned_cols=165 Identities=16% Similarity=0.201 Sum_probs=77.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC--CeEEEEEeCCCccchh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN--DTKINIIDTPGHSDFG 166 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~--~~~i~iiDTPGh~df~ 166 (681)
..+|+|+|++|+|||||++.|++........... ..+. ...+.+......+... ...+++|||||+.++.
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~---~~~~-----~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~ 102 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGP---SHRI-----KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAV 102 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSC---C----------CCEEEEEECC------CEEEEEEECC------
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCc---ccCC-----ccceeeeeEEEEEecCCcccceeeeechhhhhhc
Confidence 4679999999999999999998764421111100 0000 0011111111111222 2478999999987653
Q ss_pred H------HH--------HHHH-----------hh--cceEEEEeeCC-CCCchhhHHHHHHHHHcCCEEEEEEeecCCCC
Q 005713 167 G------EV--------ERIL-----------NM--VEGVLLVVDSV-EGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS 218 (681)
Q Consensus 167 ~------e~--------~~~l-----------~~--aD~~llVvDa~-~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~ 218 (681)
. .+ ..++ .. ++++|++++++ .++.+....+++.+.. ++|+|+|+||+|+..
T Consensus 103 ~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 103 DNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLT 181 (418)
T ss_dssp -----CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCcc
Confidence 1 11 1111 11 34466666665 6788777777777754 899999999999864
Q ss_pred CC-cccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 219 AR-PDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 219 ~~-~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.+ ......++.+.+.. ..++++.+||+++. ++..++..+...+|
T Consensus 182 ~~ev~~~k~~i~~~~~~-------~~i~~~~~sa~~~~----------~v~~~~~~l~~~iP 226 (418)
T 2qag_C 182 PEECQQFKKQIMKEIQE-------HKIKIYEFPETDDE----------EENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHHHHHHH-------HTCCCCCCC---------------------------CC
T ss_pred HHHHHHHHHHHHHHHHH-------cCCeEEeCCCCCCc----------CHHHHHHHHHhhCC
Confidence 22 11111233333322 24578999999887 56666666655443
No 196
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.10 E-value=3.1e-10 Score=121.45 Aligned_cols=82 Identities=20% Similarity=0.190 Sum_probs=56.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC-----------------e
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND-----------------T 152 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-----------------~ 152 (681)
.+|+|+|.+|+|||||+++|++......... +.|+......+.+.+ .
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p----------------~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~ 66 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYP----------------FCTIEPNTGVVPMPDPRLDALAEIVKPERILPT 66 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------C----------------CCCCCCCSSEEECCCHHHHHHHHHHCCSEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCC----------------CceECceEEEEecCCcccceeeeeecccceeee
Confidence 5799999999999999999998642111110 223333223333333 5
Q ss_pred EEEEEeCCCccchhH-------HHHHHHhhcceEEEEeeCCC
Q 005713 153 KINIIDTPGHSDFGG-------EVERILNMVEGVLLVVDSVE 187 (681)
Q Consensus 153 ~i~iiDTPGh~df~~-------e~~~~l~~aD~~llVvDa~~ 187 (681)
.++||||||+.++.. .....++.+|++++|+|+++
T Consensus 67 ~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 67 TMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred EEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 799999999987642 33456899999999999986
No 197
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.08 E-value=2.4e-10 Score=119.93 Aligned_cols=151 Identities=16% Similarity=0.221 Sum_probs=74.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhh-cCccccccceeeeeeccchhhcccceeEEeeeeEEee--CCeEEEEEeCCCc--
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQ-AKVFRDNQTVKERIMDSNDLERERGITILSKNTSITY--NDTKINIIDTPGH-- 162 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~-~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~--~~~~i~iiDTPGh-- 162 (681)
-..+|+++|+.|+|||||+++|+.. ..... + +. .+..+.. .++.+......+.. ....+++|||||+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~--g-i~---~~g~~~~--~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~ 88 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPER--V-IS---GAAEKIE--RTVQIEASTVEIEERGVKLRLTVVDTPGYGD 88 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC--------------------------------CEEEEC---CCEEEEEEEEC----
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCC--C-cc---cCCcccC--CcceEeeEEEEecCCCcccCcchhhhhhhhh
Confidence 3578999999999999999998764 22111 1 00 0000000 01111111111221 2358899999998
Q ss_pred -----cchhHHHH-------HHHhhcc-------------eEEEEeeCCC-CCchhhHHHHHHHHHcCCEEEEEEeecCC
Q 005713 163 -----SDFGGEVE-------RILNMVE-------------GVLLVVDSVE-GPMPQTRFVLKKALEFGHAVVVVVNKIDR 216 (681)
Q Consensus 163 -----~df~~e~~-------~~l~~aD-------------~~llVvDa~~-g~~~qt~~~l~~~~~~gip~ivviNKiD~ 216 (681)
..|...+. .+++.+. .+|++++.+. ++.+...+.++.+. .+.++++|+||.|+
T Consensus 89 ~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 89 AINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADT 167 (301)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGG
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCC
Confidence 44544443 4444433 2555555544 57776666665553 36799999999998
Q ss_pred CCCC-cccchhhHHHHHHHhhcccccCCceEEEeecccC
Q 005713 217 PSAR-PDYVINSTFELFIELNATDEQCDFQAIYASGIQG 254 (681)
Q Consensus 217 ~~~~-~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G 254 (681)
...+ .....+++.+.+.. ..++++++||++|
T Consensus 168 ~~~~e~~~~~~~~~~~~~~-------~~~~~~e~Sa~~~ 199 (301)
T 2qnr_A 168 LTLKERERLKKRILDEIEE-------HNIKIYHLPDAES 199 (301)
T ss_dssp SCHHHHHHHHHHHHHHHHH-------TTCCCCCCC----
T ss_pred CCHHHHHHHHHHHHHHHHH-------cCCeEEecCCccc
Confidence 6422 11112233333322 2457899999988
No 198
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.05 E-value=1.9e-10 Score=121.95 Aligned_cols=133 Identities=17% Similarity=0.202 Sum_probs=90.9
Q ss_pred cceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCC-----------CCchhhHHHHHHHHH--
Q 005713 136 RGITILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVE-----------GPMPQTRFVLKKALE-- 202 (681)
Q Consensus 136 rGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~-----------g~~~qt~~~l~~~~~-- 202 (681)
+..|+......+..++.++.||||+|++.|...+..+++.++++|+|+|.++ .-+.....+|..+..
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 4445666677788889999999999999999999999999999999999872 223344555655554
Q ss_pred --cCCEEEEEEeecCCCCCC------------------cccchhhHHHHH------HHhhcccc----------cCCceE
Q 005713 203 --FGHAVVVVVNKIDRPSAR------------------PDYVINSTFELF------IELNATDE----------QCDFQA 246 (681)
Q Consensus 203 --~gip~ivviNKiD~~~~~------------------~~~~~~ei~~~~------~~l~~~~~----------~~~~pv 246 (681)
.++|+++|+||+|+.... .++..+-+.+.| ..+..... ...+.+
T Consensus 225 ~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~ 304 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYT 304 (340)
T ss_dssp GGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEE
T ss_pred ccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEE
Confidence 368999999999975311 111112222223 11111111 024678
Q ss_pred EEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 247 IYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 247 i~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
+++||+.+. ++..+|+.+.+.+
T Consensus 305 h~TsA~dt~----------nv~~vF~~v~~~I 326 (340)
T 4fid_A 305 NPTNATDGS----------NIKRVFMLAVDVI 326 (340)
T ss_dssp EEECTTCHH----------HHHHHHHHHHHHH
T ss_pred EEEEeeCcH----------HHHHHHHHHHHHH
Confidence 999999998 8888888877654
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.02 E-value=6e-10 Score=119.78 Aligned_cols=90 Identities=16% Similarity=0.261 Sum_probs=55.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEe--------eeeEE-e----eCCeEEEE
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILS--------KNTSI-T----YNDTKINI 156 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~--------~~~~~-~----~~~~~i~i 156 (681)
.+|+|+|.+|+|||||+++|++........... ..+...|..... ..... . +.+..+.|
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~--------Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~l 73 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFA--------TIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEF 73 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGG--------GGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCc--------eeccceeeEecChHHHHHHHHHhcccccccccCCceEEE
Confidence 469999999999999999999864211110000 000000110000 00000 0 23468999
Q ss_pred EeCCCccch-------hHHHHHHHhhcceEEEEeeCCC
Q 005713 157 IDTPGHSDF-------GGEVERILNMVEGVLLVVDSVE 187 (681)
Q Consensus 157 iDTPGh~df-------~~e~~~~l~~aD~~llVvDa~~ 187 (681)
|||||+..+ .......++.+|++++|+|+++
T Consensus 74 vDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 74 VDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp EECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred EECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 999998765 2455667899999999999986
No 200
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.01 E-value=3.7e-10 Score=112.45 Aligned_cols=169 Identities=15% Similarity=0.196 Sum_probs=93.7
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeee---eccchhhcc--cceeEEee-eeE------------Ee
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERI---MDSNDLERE--RGITILSK-NTS------------IT 148 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~---~D~~~~E~e--rGiTi~~~-~~~------------~~ 148 (681)
.+.++|+|+|+.|+|||||+++|+...+.......+...+ .|....+.. .-+.+... ... +.
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 3578999999999999999999998754322222221111 111111111 01111100 000 01
Q ss_pred eCCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhH
Q 005713 149 YNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINST 228 (681)
Q Consensus 149 ~~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei 228 (681)
..+..+.++||+|...... ..-...+..+.|+|+..+...... .....+.|.++|+||+|+.+.+ ....+++
T Consensus 116 ~~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~~~~iiv~NK~Dl~~~~-~~~~~~~ 187 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIEK----HPGIMKTADLIVINKIDLADAV-GADIKKM 187 (226)
T ss_dssp GGGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTTT----CHHHHTTCSEEEEECGGGHHHH-TCCHHHH
T ss_pred cCCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHhh----hhhHhhcCCEEEEeccccCchh-HHHHHHH
Confidence 1234789999999421100 011234567788886543322211 1122468999999999985321 0123344
Q ss_pred HHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 229 FELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 229 ~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.+.+..+. ...+++++||++|. |+.++++.+.+.+
T Consensus 188 ~~~~~~~~-----~~~~~~~~Sa~~g~----------gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 188 ENDAKRIN-----PDAEVVLLSLKTME----------GFDKVLEFIEKSV 222 (226)
T ss_dssp HHHHHHHC-----TTSEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred HHHHHHhC-----CCCeEEEEEecCCC----------CHHHHHHHHHHHH
Confidence 44443332 13579999999999 9999999987654
No 201
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=98.99 E-value=8.5e-10 Score=108.96 Aligned_cols=84 Identities=18% Similarity=0.362 Sum_probs=70.7
Q ss_pred cCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEE--ec
Q 005713 285 KDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CG 362 (681)
Q Consensus 285 ~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~g 362 (681)
.++||+|+|.+++. +.|+++.|||.+|++++||.|.+.|.+.. .+|++|+. ++.++++|.|||+|++ +|
T Consensus 3 ~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~~~---~~V~~I~~----~~~~~~~A~aGd~V~l~L~g 73 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNKHN---VEVLGILS----DDVETDTVAPGENLKIRLKG 73 (204)
T ss_dssp ----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTTEE---EEEEEECS----SSSCBSEECTTSEEEEEEEE
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCCCE---EEEEEEEE----CCEEeEEECCCCEEEEEEcC
Confidence 47899999999976 68999999999999999999999998755 49999954 4578999999999999 77
Q ss_pred cc--ccccCCeeeccCC
Q 005713 363 ID--DIQIGETIADKVS 377 (681)
Q Consensus 363 l~--~~~~Gdtl~~~~~ 377 (681)
++ ++.+||+|+++++
T Consensus 74 i~~~di~rG~vl~~~~~ 90 (204)
T 3e1y_E 74 IEEEEILPGFILCDPNN 90 (204)
T ss_dssp SSSSCCCTTCEEBCSSS
T ss_pred CCHHHCccceEEECCCC
Confidence 75 7999999998765
No 202
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.99 E-value=1.1e-09 Score=117.87 Aligned_cols=116 Identities=16% Similarity=0.283 Sum_probs=84.7
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc-
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD- 164 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d- 164 (681)
....-+|+|+|.+|+|||||+|+|++........ .++|+......+.+.+.++.|+||||..+
T Consensus 69 k~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~----------------pftT~~~~~g~~~~~~~~i~l~D~pGl~~~ 132 (376)
T 4a9a_A 69 RTGVASVGFVGFPSVGKSTLLSKLTGTESEAAEY----------------EFTTLVTVPGVIRYKGAKIQMLDLPGIIDG 132 (376)
T ss_dssp BCSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGT----------------CSSCCCEEEEEEEETTEEEEEEECGGGCCC
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHhCCCCcccCC----------------CCceeeeeeEEEEeCCcEEEEEeCCCccCC
Confidence 3456789999999999999999998754322111 16778888888999999999999999743
Q ss_pred ------hhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHc-----CCEEEEEEeecCCCC
Q 005713 165 ------FGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF-----GHAVVVVVNKIDRPS 218 (681)
Q Consensus 165 ------f~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~-----gip~ivviNKiD~~~ 218 (681)
....+...++.||++++|+|+++.. .+...+...+... ..|.++++||+|...
T Consensus 133 a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~-~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~g 196 (376)
T 4a9a_A 133 AKDGRGRGKQVIAVARTCNLLFIILDVNKPL-HHKQIIEKELEGVGIRLNKTPPDILIKKKEKGG 196 (376)
T ss_dssp -----CHHHHHHHHHHHCSEEEEEEETTSHH-HHHHHHHHHHHHTTEEETCCCCCEEEEECSSSC
T ss_pred chhhhHHHHHHHHHHHhcCccccccccCccH-HHHHHHHHHHHHhhHhhccCChhhhhhHhhhhh
Confidence 2344566788999999999998643 2222222333333 358899999999753
No 203
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.98 E-value=2.7e-10 Score=127.05 Aligned_cols=173 Identities=16% Similarity=0.166 Sum_probs=96.4
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccc-cceee-----eeecc-chhhcccceeEEeeee-------------E
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDN-QTVKE-----RIMDS-NDLERERGITILSKNT-------------S 146 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~-~~~~~-----~~~D~-~~~E~erGiTi~~~~~-------------~ 146 (681)
.+.++|+++|++|+|||||+++|.......... ..+.. ...|. .......++++..... .
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 346789999999999999999998543211000 00000 00000 0111223454433211 1
Q ss_pred EeeCCeEEEEEeCCCccc----hhHHHHHHHh--hcceEEEEeeCCCCCchhhHHHHHHHHHcCCEE-EEEEeecCCCCC
Q 005713 147 ITYNDTKINIIDTPGHSD----FGGEVERILN--MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAV-VVVVNKIDRPSA 219 (681)
Q Consensus 147 ~~~~~~~i~iiDTPGh~d----f~~e~~~~l~--~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~-ivviNKiD~~~~ 219 (681)
+.+.++.+.||||||... +..++..+.. .+|.+++|+|+..+.. ....+....+ .+|+ ++|+||+|...
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvVlNK~D~~~- 254 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVIVTKLDGHA- 254 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEEEECTTSCC-
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceEEEEeCCcccc-
Confidence 234788999999999863 3344433332 6899999999998753 2333333333 2775 89999999863
Q ss_pred CcccchhhHHHHHHHhhcc-------cc----cCCceEEEeecccCCCCCCCCCCCCC-cchhHHHHHhh
Q 005713 220 RPDYVINSTFELFIELNAT-------DE----QCDFQAIYASGIQGKAGLSPDNLADD-LGPLFESIMRC 277 (681)
Q Consensus 220 ~~~~~~~ei~~~~~~l~~~-------~~----~~~~pvi~~SA~~G~~~~~~~~~~~g-i~~Ll~~I~~~ 277 (681)
+....++ +.. .++.. .. ....|.+++|++.|. | +..|++.+.+.
T Consensus 255 ~~g~~l~-~~~---~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~----------Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 255 KGGGALS-AVA---ATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGM----------GDIEGLIDKVNEL 310 (504)
T ss_dssp CCTHHHH-HHH---HHCCCEEEEECSSSTTCEECCTHHHHHHCCCTT----------TTTTTTHHHHTTT
T ss_pred chHHHHH-HHH---HhCCCeEEeccccchhhhhccCcceeeehhcCC----------CcHHHHHHHHHHH
Confidence 2222222 221 11110 00 001245667888887 6 89999998765
No 204
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.96 E-value=3e-10 Score=121.53 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=93.6
Q ss_pred ceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCC-----------CchhhHHHHHHHHH---
Q 005713 137 GITILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-----------PMPQTRFVLKKALE--- 202 (681)
Q Consensus 137 GiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g-----------~~~qt~~~l~~~~~--- 202 (681)
..|+......+.+++..+.||||+|+..|...+..+++.++++|+|+|.++- -+.....++..+..
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 3455555566788899999999999999999999999999999999998862 23445556665554
Q ss_pred -cCCEEEEEEeecCCCCC------------------CcccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCC
Q 005713 203 -FGHAVVVVVNKIDRPSA------------------RPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNL 263 (681)
Q Consensus 203 -~gip~ivviNKiD~~~~------------------~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~ 263 (681)
.+.|+|+|+||+|+... ..++..+-+...|..+........++++++||++|.
T Consensus 258 ~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~-------- 329 (353)
T 1cip_A 258 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTK-------- 329 (353)
T ss_dssp GTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHH--------
T ss_pred ccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCch--------
Confidence 36899999999998421 111222222223333322112346789999999999
Q ss_pred CCCcchhHHHHHhhC
Q 005713 264 ADDLGPLFESIMRCI 278 (681)
Q Consensus 264 ~~gi~~Ll~~I~~~l 278 (681)
|+..+|+++.+.+
T Consensus 330 --nV~~vF~~v~~~i 342 (353)
T 1cip_A 330 --NVQFVFDAVTDVI 342 (353)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHH
Confidence 8899998887765
No 205
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.93 E-value=5e-10 Score=119.29 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=65.7
Q ss_pred eeCCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCc--ccch
Q 005713 148 TYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARP--DYVI 225 (681)
Q Consensus 148 ~~~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~--~~~~ 225 (681)
.+.+..+.||||||..+-.. .....+|.+++|+|+..+...+.. .... ..++.++++||+|+..... ....
T Consensus 144 ~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i--~~~i--~~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 144 EAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGI--KKGI--FELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp HHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------C--CTTH--HHHCSEEEEECCSTTCCHHHHHHHH
T ss_pred hcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHH--HHHH--hccccEEEEEchhccCchhHHHHHH
Confidence 34688999999999865322 345789999999998654221100 0001 1246688889999753210 0011
Q ss_pred hhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 226 NSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 226 ~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.++...+.-+.........|++++||++|. |+..|++.|.+..+
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~----------gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGK----------GLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTB----------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCC----------CHHHHHHHHHHHHH
Confidence 111111110110000113478999999999 89999998887653
No 206
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.83 E-value=1.3e-09 Score=117.08 Aligned_cols=130 Identities=12% Similarity=0.203 Sum_probs=83.1
Q ss_pred eEEeeeeEEeeCCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCC-----------CchhhHHHHHHHHH----c
Q 005713 139 TILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEG-----------PMPQTRFVLKKALE----F 203 (681)
Q Consensus 139 Ti~~~~~~~~~~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g-----------~~~qt~~~l~~~~~----~ 203 (681)
|+......+.+++..+.||||+|+..|...+..+++.++++|+|+|.++- -+.....+|..+.. .
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 44444566778899999999999999999999999999999999998872 22344455555543 3
Q ss_pred CCEEEEEEeecCCCCCC---------------cccchhhHHHH----HHHhhcccccCCceEEEeecccCCCCCCCCCCC
Q 005713 204 GHAVVVVVNKIDRPSAR---------------PDYVINSTFEL----FIELNATDEQCDFQAIYASGIQGKAGLSPDNLA 264 (681)
Q Consensus 204 gip~ivviNKiD~~~~~---------------~~~~~~ei~~~----~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~ 264 (681)
+.|+|+|+||+|+.... .....++.... |..+........+.++++||++|.
T Consensus 268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~--------- 338 (362)
T 1zcb_A 268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTE--------- 338 (362)
T ss_dssp TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHH---------
T ss_pred CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCch---------
Confidence 68999999999985211 00112333332 223322111235678999999999
Q ss_pred CCcchhHHHHHhhC
Q 005713 265 DDLGPLFESIMRCI 278 (681)
Q Consensus 265 ~gi~~Ll~~I~~~l 278 (681)
|+..+|+.+.+.+
T Consensus 339 -nV~~vF~~v~~~i 351 (362)
T 1zcb_A 339 -NIRLVFRDVKDTI 351 (362)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHH
Confidence 8899998887655
No 207
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.67 E-value=6.1e-08 Score=105.57 Aligned_cols=147 Identities=16% Similarity=0.148 Sum_probs=81.5
Q ss_pred cCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC--eEEEEEeCCCc
Q 005713 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND--TKINIIDTPGH 162 (681)
Q Consensus 85 ~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~--~~i~iiDTPGh 162 (681)
....+++++|+|++|+|||||++.|++......... . ...+.+.....+.+...+ ..++++|+||.
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~-------~-----~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~ 105 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPAT-------H-----TQPGVQLQSNTYDLQESNVRLKLTIVSTVGF 105 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------------------CCSSCEEEEEEEEEEC--CEEEEEEEEEECC
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCC-------C-----CCccceEeeEEEEeecCccccccchhhhhhh
Confidence 344567899999999999999999987632100000 0 001222221111122222 26899999997
Q ss_pred cchh--------------HHHHHHHhh---------------cc-eEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEe
Q 005713 163 SDFG--------------GEVERILNM---------------VE-GVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVN 212 (681)
Q Consensus 163 ~df~--------------~e~~~~l~~---------------aD-~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviN 212 (681)
.+.. ..+..++.. +| ++++|+|+.++....+.++++.+. .+.|+|+|+|
T Consensus 106 g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~ 184 (427)
T 2qag_B 106 GDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIA 184 (427)
T ss_dssp CC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEES
T ss_pred hhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEc
Confidence 5431 111122211 12 366778888898888888887776 7899999999
Q ss_pred ecCCCCCCcccchhhHHHHHHH-hhcccccCCceEEEeec
Q 005713 213 KIDRPSARPDYVINSTFELFIE-LNATDEQCDFQAIYASG 251 (681)
Q Consensus 213 KiD~~~~~~~~~~~ei~~~~~~-l~~~~~~~~~pvi~~SA 251 (681)
|+|..... + +..+...+.+ +.. ..++++++|.
T Consensus 185 KtD~Lt~~--E-~~~l~~~I~~~L~~----~gi~I~~is~ 217 (427)
T 2qag_B 185 KADAISKS--E-LTKFKIKITSELVS----NGVQIYQFPT 217 (427)
T ss_dssp CGGGSCHH--H-HHHHHHHHHHHHBT----TBCCCCCCC-
T ss_pred chhccchH--H-HHHHHHHHHHHHHH----cCCcEEecCC
Confidence 99976421 1 2333333332 322 2467888874
No 208
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.62 E-value=1.1e-08 Score=110.83 Aligned_cols=130 Identities=15% Similarity=0.218 Sum_probs=88.4
Q ss_pred eEEeeeeEEeeCCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCC-----------CCchhhHHHHHHHHHc----
Q 005713 139 TILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVE-----------GPMPQTRFVLKKALEF---- 203 (681)
Q Consensus 139 Ti~~~~~~~~~~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~-----------g~~~qt~~~l~~~~~~---- 203 (681)
|+......+.+++..+.||||+|++.|...+..+++.++++|+|+|.++ .-+.....++..+...
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 4444455677788999999999999999999999999999999999876 1123445566655542
Q ss_pred CCEEEEEEeecCCCCCCcc------------c-----------------chhhHHHH----HHHhhcc--cccCCceEEE
Q 005713 204 GHAVVVVVNKIDRPSARPD------------Y-----------------VINSTFEL----FIELNAT--DEQCDFQAIY 248 (681)
Q Consensus 204 gip~ivviNKiD~~~~~~~------------~-----------------~~~ei~~~----~~~l~~~--~~~~~~pvi~ 248 (681)
++|+|+|+||+|+...+.. . ..++.... |.++... .....+.+++
T Consensus 284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~ 363 (402)
T 1azs_C 284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 363 (402)
T ss_dssp SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEE
T ss_pred CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEE
Confidence 5799999999997432110 0 01222222 2222110 1112456789
Q ss_pred eecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 249 ASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 249 ~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
+||+++. ++..+|+.+.+.+
T Consensus 364 TSA~d~~----------nV~~vF~~v~~~I 383 (402)
T 1azs_C 364 TCAVDTE----------NIRRVFNDCRDII 383 (402)
T ss_dssp CCTTCHH----------HHHHHHHHHHHHH
T ss_pred EEeecCc----------CHHHHHHHHHHHH
Confidence 9999999 8888888877654
No 209
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.62 E-value=1.3e-08 Score=107.54 Aligned_cols=132 Identities=13% Similarity=0.216 Sum_probs=93.4
Q ss_pred cceeEEeeeeEEeeCCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCC-------CC----CchhhHHHHHHHHH--
Q 005713 136 RGITILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSV-------EG----PMPQTRFVLKKALE-- 202 (681)
Q Consensus 136 rGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~-------~g----~~~qt~~~l~~~~~-- 202 (681)
+..|+......+..++.++.||||+|++.|...+..+++.++++|+|+|.+ +. -+.....+|..+..
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 445666667778889999999999999999999999999999999999765 21 12334455555543
Q ss_pred --cCCEEEEEEeecCCCCCC-------------------cccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCC
Q 005713 203 --FGHAVVVVVNKIDRPSAR-------------------PDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPD 261 (681)
Q Consensus 203 --~gip~ivviNKiD~~~~~-------------------~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~ 261 (681)
.+.|+++|+||+|+...+ .++..+-+.+.|.++... ....+.++++||+++.
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~-~~~~i~~~~TsA~d~~------ 303 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPD-SDKIIYSHFTCATDTE------ 303 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTT-TTSCEEEEECCTTCHH------
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhccc-ccCCcEEEEEEeecCH------
Confidence 368999999999975321 122222233334433322 2345678899999998
Q ss_pred CCCCCcchhHHHHHhhC
Q 005713 262 NLADDLGPLFESIMRCI 278 (681)
Q Consensus 262 ~~~~gi~~Ll~~I~~~l 278 (681)
++..+|+.+.+.+
T Consensus 304 ----nV~~vF~~v~~~I 316 (327)
T 3ohm_A 304 ----NIRFVFAAVKDTI 316 (327)
T ss_dssp ----HHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHH
Confidence 8888888887765
No 210
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.53 E-value=2.5e-08 Score=106.62 Aligned_cols=119 Identities=15% Similarity=0.179 Sum_probs=78.4
Q ss_pred CCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCC-----------CCchhhHHHHHHHHH----cCCEEEEEEeec
Q 005713 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVE-----------GPMPQTRFVLKKALE----FGHAVVVVVNKI 214 (681)
Q Consensus 150 ~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~-----------g~~~qt~~~l~~~~~----~gip~ivviNKi 214 (681)
+...+.||||+|++.|...+..+++.++++|+|+|.++ .-+.....++..+.. .+.|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 45789999999999999999999999999999999861 122344455555543 368999999999
Q ss_pred CCCCCCccc--------------------chhhHHHHHH----Hhh---ccc--ccCCceEEEeecccCCCCCCCCCCCC
Q 005713 215 DRPSARPDY--------------------VINSTFELFI----ELN---ATD--EQCDFQAIYASGIQGKAGLSPDNLAD 265 (681)
Q Consensus 215 D~~~~~~~~--------------------~~~ei~~~~~----~l~---~~~--~~~~~pvi~~SA~~G~~~~~~~~~~~ 265 (681)
|+....... ..++....+. .+. ... ....+.++++||++|.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~---------- 330 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQK---------- 330 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHH----------
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecch----------
Confidence 974221000 1222222222 120 000 0123567899999999
Q ss_pred CcchhHHHHHhhC
Q 005713 266 DLGPLFESIMRCI 278 (681)
Q Consensus 266 gi~~Ll~~I~~~l 278 (681)
|+..+|+.+.+.+
T Consensus 331 nV~~vF~~v~~~I 343 (354)
T 2xtz_A 331 LVKKTFKLVDETL 343 (354)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 8899998887654
No 211
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.53 E-value=4.2e-08 Score=102.70 Aligned_cols=103 Identities=18% Similarity=0.050 Sum_probs=76.8
Q ss_pred EEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCC-c-hhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHH
Q 005713 153 KINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGP-M-PQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFE 230 (681)
Q Consensus 153 ~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~-~-~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~ 230 (681)
+++|||| ++.|...+..+++.+|++|+|+|+++.. . .....++..+...++|+++|+||+|+.+.+ . ++++.+
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~~--~-v~~~~~ 138 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDED--D-LRKVRE 138 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHH--H-HHHHHH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCch--h-HHHHHH
Confidence 7899999 9999888888999999999999998753 2 333455666666789999999999986432 1 233444
Q ss_pred HHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHH
Q 005713 231 LFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIM 275 (681)
Q Consensus 231 ~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~ 275 (681)
....+.. . ++++++||++|. |++++++.+.
T Consensus 139 ~~~~~~~----~-~~~~~~SAktg~----------gv~~lf~~l~ 168 (301)
T 1u0l_A 139 LEEIYSG----L-YPIVKTSAKTGM----------GIEELKEYLK 168 (301)
T ss_dssp HHHHHTT----T-SCEEECCTTTCT----------THHHHHHHHS
T ss_pred HHHHHhh----h-CcEEEEECCCCc----------CHHHHHHHhc
Confidence 3333221 1 579999999999 8888887753
No 212
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.52 E-value=6.1e-07 Score=97.68 Aligned_cols=168 Identities=10% Similarity=0.094 Sum_probs=95.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC-eEEEEEeCCCccchh
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND-TKINIIDTPGHSDFG 166 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~-~~i~iiDTPGh~df~ 166 (681)
....++|+|++|+|||||++.|++..... .+.+. .+..+..+ +++ .+.... ..++++|+||...-.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~--~GsI~---~~g~~~t~-~~~-------v~q~~~~~~ltv~D~~g~~~~~ 134 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEE--EGAAK---TGVVEVTM-ERH-------PYKHPNIPNVVFWDLPGIGSTN 134 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTS--TTSCC---CCC----C-CCE-------EEECSSCTTEEEEECCCGGGSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcc--CceEE---ECCeecce-eEE-------eccccccCCeeehHhhcccchH
Confidence 34589999999999999999999842211 11110 00000001 121 111111 268999999974322
Q ss_pred HHHHHHHh-----hcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCC-------CCCcccchhhHHHHHHH
Q 005713 167 GEVERILN-----MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP-------SARPDYVINSTFELFIE 234 (681)
Q Consensus 167 ~e~~~~l~-----~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~-------~~~~~~~~~ei~~~~~~ 234 (681)
..+..++. ..|..++ +|+.. .+.|...+.+.+...+.|+++|+||.|+. .-++. ...++.+.+.+
T Consensus 135 ~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~-~~~~l~~~l~~ 211 (413)
T 1tq4_A 135 FPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTF-DKEKVLQDIRL 211 (413)
T ss_dssp CCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTC-CHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHH-HHHHHHHHHHH
Confidence 22233333 2344444 77654 46777777788888899999999999964 11111 12233333333
Q ss_pred hhc---ccccC-CceEEEeec--ccCCCCCCCCCCCCCcchhHHHHHhhCCCC
Q 005713 235 LNA---TDEQC-DFQAIYASG--IQGKAGLSPDNLADDLGPLFESIMRCIPGP 281 (681)
Q Consensus 235 l~~---~~~~~-~~pvi~~SA--~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~p 281 (681)
+.. ..... ...+|.+|+ ..+. +++.|.+.+.+.+|.-
T Consensus 212 l~~~~l~~~g~~~~~iiliSsh~l~~~----------~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 212 NCVNTFRENGIAEPPIFLLSNKNVCHY----------DFPVLMDKLISDLPIY 254 (413)
T ss_dssp HHHHHHHHTTCSSCCEEECCTTCTTST----------THHHHHHHHHHHSCGG
T ss_pred HHHHHHHhcCCCCCcEEEEecCcCCcc----------CHHHHHHHHHHhCccc
Confidence 321 00001 125788999 5555 7999999999998754
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.48 E-value=1.5e-08 Score=109.16 Aligned_cols=117 Identities=12% Similarity=0.090 Sum_probs=70.6
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh--
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG-- 166 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~-- 166 (681)
.++|+++|.+|+|||||+|+|++..........+ ....|+|.......+ . ..+.++||||..+..
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~----------~~~~gtT~~~~~~~~--~-~~~~liDtPG~~~~~~~ 228 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITT----------SYFPGTTLDMIEIPL--E-SGATLYDTPGIINHHQM 228 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEE----------EECTTSSCEEEEEEC--S-TTCEEEECCSCCCCSSG
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceee----------cCCCCeEEeeEEEEe--C-CCeEEEeCCCcCcHHHH
Confidence 4689999999999999999999862110000000 011255554433322 2 248999999975432
Q ss_pred -----HHHHHHH---hhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCC
Q 005713 167 -----GEVERIL---NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS 218 (681)
Q Consensus 167 -----~e~~~~l---~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~ 218 (681)
.+....+ +..|.+++++|+...........+..+...+.|+++++||+|...
T Consensus 229 ~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 229 AHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVH 288 (369)
T ss_dssp GGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred HHHHhHHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccc
Confidence 1122333 668999999998532211111113333445789999999999764
No 214
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.46 E-value=1.8e-07 Score=101.09 Aligned_cols=84 Identities=14% Similarity=0.201 Sum_probs=50.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeC-----------------
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYN----------------- 150 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~----------------- 150 (681)
...+|+|+|.+|+|||||+++|++........ .++|+......+.+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~----------------p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~ 84 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENF----------------PFCTIDPNESRVPVPDERFDFLCQYHKPASKI 84 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-----------------------------CCSEEEEECCCHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCC----------------CccccCceeEEEEECCccceeeccccCccccc
Confidence 34679999999999999999998754311110 123333333333332
Q ss_pred CeEEEEEeCCCccchhH-------HHHHHHhhcceEEEEeeCCC
Q 005713 151 DTKINIIDTPGHSDFGG-------EVERILNMVEGVLLVVDSVE 187 (681)
Q Consensus 151 ~~~i~iiDTPGh~df~~-------e~~~~l~~aD~~llVvDa~~ 187 (681)
...++||||||+..+.. .+..+++.+|++++|+|+++
T Consensus 85 ~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 85 PAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp CCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 23599999999977554 55678899999999999975
No 215
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.46 E-value=6.4e-07 Score=92.23 Aligned_cols=123 Identities=21% Similarity=0.267 Sum_probs=71.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh---
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG--- 166 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~--- 166 (681)
++++|+|+.|+|||||++.|++.............. +.......+++....... .-...++++|+||..+..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~--~i~~~~~~~~i~~v~q~~---~~~~~ltv~d~~~~g~~~~~~ 77 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREE--KIPKTVEIKAIGHVIEEG---GVKMKLTVIDTPGFGDQINNE 77 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC-------CCEEEEECCCC--CCSBCT
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCc--ccCcceeeeeeEEEeecC---CCcCCceEEechhhhhhcccH
Confidence 689999999999999999999764321110000000 000001112222211110 111378999999974311
Q ss_pred ---HHHHH--------HH--------------hhcceEEEEeeC-CCCCchhhHHHHHHHHHcCCEEEEEEeecCCCC
Q 005713 167 ---GEVER--------IL--------------NMVEGVLLVVDS-VEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS 218 (681)
Q Consensus 167 ---~e~~~--------~l--------------~~aD~~llVvDa-~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~ 218 (681)
..+.. .+ ..++++++++|. .+|..+.+.+.++.+.+. +++|+|+||+|...
T Consensus 78 ~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 78 NCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMT 154 (270)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCC
Confidence 01111 11 124778999994 488999999999888877 99999999999764
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.41 E-value=4.9e-08 Score=105.15 Aligned_cols=117 Identities=11% Similarity=0.113 Sum_probs=68.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCcc-ccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh-
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVF-RDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG- 166 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~-~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~- 166 (681)
.++|+++|.+|+|||||+|+|++..... ..... .....|+|.......+ . ..+.++||||..+..
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~----------~~~~~gtT~~~~~~~~--~-~~~~liDtPG~~~~~~ 226 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVIT----------TSHFPGTTLDLIDIPL--D-EESSLYDTPGIINHHQ 226 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCE----------EECCC----CEEEEES--S-SSCEEEECCCBCCTTS
T ss_pred cceEEEecCCCCChhHHHHHHHhhhcccccccee----------cCCCCCeecceEEEEe--c-CCeEEEeCCCcCcHHH
Confidence 3679999999999999999999863211 00000 0112256654443332 2 238999999985432
Q ss_pred ------HHHHHH---HhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCC
Q 005713 167 ------GEVERI---LNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS 218 (681)
Q Consensus 167 ------~e~~~~---l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~ 218 (681)
.+.... ....+.+++++|+...........+..+...+.|+++|+||+|...
T Consensus 227 ~~~~l~~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 227 MAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIH 287 (368)
T ss_dssp GGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred HHHHhhHHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccc
Confidence 111111 2557889999998532221111112333445789999999999764
No 217
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.32 E-value=1.6e-06 Score=95.17 Aligned_cols=126 Identities=16% Similarity=0.188 Sum_probs=68.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccc-ee-----eeeeccchh-hcccceeEEeee------------eEEee
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQT-VK-----ERIMDSNDL-ERERGITILSKN------------TSITY 149 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~-~~-----~~~~D~~~~-E~erGiTi~~~~------------~~~~~ 149 (681)
.++|+++|++|+||||++..|............ +. ....+.... ....|+.+.... .--.+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999874311000000 00 000000000 001122221110 00012
Q ss_pred CCeEEEEEeCCCccchhHHHHHHH----h--hcceEEEEeeCCCCCchhhHHHHHHHHHcCC-E-EEEEEeecCCC
Q 005713 150 NDTKINIIDTPGHSDFGGEVERIL----N--MVEGVLLVVDSVEGPMPQTRFVLKKALEFGH-A-VVVVVNKIDRP 217 (681)
Q Consensus 150 ~~~~i~iiDTPGh~df~~e~~~~l----~--~aD~~llVvDa~~g~~~qt~~~l~~~~~~gi-p-~ivviNKiD~~ 217 (681)
.++.+.||||||...........+ . .+|.+++|+|+..|. ......+.. ..++ | ..+|+||+|..
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~-~~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAF-KEAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHH-HTTSCSCEEEEEECSSSC
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHH-hhcccCCeEEEEeCCCCc
Confidence 568899999999865433222221 1 478999999998763 222222222 2246 6 88999999974
No 218
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.24 E-value=7.5e-06 Score=89.56 Aligned_cols=154 Identities=18% Similarity=0.146 Sum_probs=82.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccc---------hhhcccceeEEeeee-------------
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSN---------DLERERGITILSKNT------------- 145 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~---------~~E~erGiTi~~~~~------------- 145 (681)
+...|+++|.+|+||||++..|......... .+----.|.. ......|+.+.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~--kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~ 176 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGY--KVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVD 176 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTC--CEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCC--eEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHH
Confidence 3578999999999999999999754221100 0000000110 011122443332111
Q ss_pred EEeeCCeEEEEEeCCCccchh----HHHHHH--HhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCC
Q 005713 146 SITYNDTKINIIDTPGHSDFG----GEVERI--LNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSA 219 (681)
Q Consensus 146 ~~~~~~~~i~iiDTPGh~df~----~e~~~~--l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~ 219 (681)
.+...++.+.||||||..... .++... ...+|.++||+|+..|- ..........+.-....||+||+|....
T Consensus 177 ~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~~a~~f~~~~~i~gVIlTKlD~~~~ 254 (443)
T 3dm5_A 177 YFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQALAFKEATPIGSIIVTKLDGSAK 254 (443)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHHHSCTTEEEEEECCSSCSS
T ss_pred HHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHHHHHHHHhhCCCeEEEEECCCCccc
Confidence 111245889999999964332 233222 22468999999998752 2223333333333446789999997532
Q ss_pred CcccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCC
Q 005713 220 RPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLS 259 (681)
Q Consensus 220 ~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~ 259 (681)
. ..+..... ....|+.|++. |.++.+
T Consensus 255 g-----G~~ls~~~-------~~g~PI~fig~--Ge~vdd 280 (443)
T 3dm5_A 255 G-----GGALSAVA-------ATGAPIKFIGT--GEKIDD 280 (443)
T ss_dssp H-----HHHHHHHH-------TTCCCEEEEEC--SSSTTC
T ss_pred c-----cHHHHHHH-------HHCCCEEEEEc--CCChHH
Confidence 1 11112111 13568988885 665533
No 219
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.23 E-value=4.4e-06 Score=91.32 Aligned_cols=151 Identities=18% Similarity=0.190 Sum_probs=82.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccc--------h-hhcccceeEEeee-------------eE
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSN--------D-LERERGITILSKN-------------TS 146 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~--------~-~E~erGiTi~~~~-------------~~ 146 (681)
...|+++|+.|+||||++..|........ ..+.---.|.. . .....|+.+.... ..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G--~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~ 174 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRG--YKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDI 174 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHH
Confidence 56789999999999999999975421110 01100000000 0 0011133322211 01
Q ss_pred EeeCCeEEEEEeCCCccc------hhHHHHHHHhh--cceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCC
Q 005713 147 ITYNDTKINIIDTPGHSD------FGGEVERILNM--VEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS 218 (681)
Q Consensus 147 ~~~~~~~i~iiDTPGh~d------f~~e~~~~l~~--aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~ 218 (681)
+.+.++.+.|+||||... +..++....+. .|.++||+|+..|- ......+...+.-.+..||+||+|..
T Consensus 175 a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq--~a~~~a~~f~~~~~~~gVIlTKlD~~- 251 (433)
T 3kl4_A 175 FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ--KAYDLASRFHQASPIGSVIITKMDGT- 251 (433)
T ss_dssp TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GGHHHHHHHHHHCSSEEEEEECGGGC-
T ss_pred HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch--HHHHHHHHHhcccCCcEEEEeccccc-
Confidence 123478899999999644 44455444333 48999999998762 22233334433334578899999965
Q ss_pred CCcccchhhHHHHHHHhhcccccCCceEEEeecccCCCC
Q 005713 219 ARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAG 257 (681)
Q Consensus 219 ~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~ 257 (681)
++.... .+.... ...|+.|++. |.++
T Consensus 252 a~~G~a----ls~~~~-------~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 252 AKGGGA----LSAVVA-------TGATIKFIGT--GEKI 277 (433)
T ss_dssp SCHHHH----HHHHHH-------HTCEEEEEEC--CSSS
T ss_pred ccchHH----HHHHHH-------HCCCEEEEEC--CCCh
Confidence 222211 122111 2468988885 6644
No 220
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.19 E-value=2.9e-06 Score=91.73 Aligned_cols=85 Identities=19% Similarity=0.252 Sum_probs=58.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCC----------------
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYND---------------- 151 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~---------------- 151 (681)
.-.+|+|+|++|+|||||+++|++.......+. .++|+......+.+.+
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~---------------p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v 83 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANY---------------PYATIDPEEAKVAVPDERFDWLCEAYKPKSRV 83 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCC---------------SSCCCCTTEEEEEECCHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCC---------------CceeecceeeeeeeCCcchhhhhhhccccccc
Confidence 356899999999999999999998543111110 0223333333333332
Q ss_pred -eEEEEEeCCCccc-------hhHHHHHHHhhcceEEEEeeCCC
Q 005713 152 -TKINIIDTPGHSD-------FGGEVERILNMVEGVLLVVDSVE 187 (681)
Q Consensus 152 -~~i~iiDTPGh~d-------f~~e~~~~l~~aD~~llVvDa~~ 187 (681)
..+.+|||||... +.......++.+|.+++|+|+.+
T Consensus 84 ~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 84 PAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4689999999643 44566778899999999999876
No 221
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.12 E-value=8.2e-06 Score=79.86 Aligned_cols=111 Identities=7% Similarity=-0.030 Sum_probs=68.0
Q ss_pred EEEEEeCC------CccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHH---HHH-H----cCCEEEEEEeec-CCC
Q 005713 153 KINIIDTP------GHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLK---KAL-E----FGHAVVVVVNKI-DRP 217 (681)
Q Consensus 153 ~i~iiDTP------Gh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~---~~~-~----~gip~ivviNKi-D~~ 217 (681)
++..-.+| |+..+...|..|+..+|++|+|||+++......++.+. .+. + .+.|++|+.||. |++
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 44555666 78888899999999999999999998753333544442 221 1 478999999995 776
Q ss_pred CCCcccchhhHHHHHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 218 SARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 218 ~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
++- ...++.+.+ +...-...+-+..+||++|. |+.+-|+++.+.+.
T Consensus 177 ~Am---s~~EI~e~L---~L~~l~R~W~Iq~csA~TGe----------GL~EGLdWL~~~l~ 222 (227)
T 3l82_B 177 KRM---PCFYLAHEL---HLNLLNHPWLVQDTEAETLT----------GFLNGIEWILEEVE 222 (227)
T ss_dssp CBC---CHHHHHHHT---TGGGGCSCEEEEEEETTTCT----------THHHHHHHHTTTTT
T ss_pred CCC---CHHHHHHHc---CCcCCCCCEEEEEeECCCCc----------CHHHHHHHHHHHHH
Confidence 542 223343332 22111246789999999999 99999999988764
No 222
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.10 E-value=1.3e-06 Score=91.31 Aligned_cols=96 Identities=15% Similarity=0.131 Sum_probs=64.6
Q ss_pred ccchhHHHHHHHhhcceEEEEeeCCCCC-chh-hHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhccc
Q 005713 162 HSDFGGEVERILNMVEGVLLVVDSVEGP-MPQ-TRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATD 239 (681)
Q Consensus 162 h~df~~e~~~~l~~aD~~llVvDa~~g~-~~q-t~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~ 239 (681)
++.|......+++.+|++|+|+|+++.. ... ...++..+...++|+++|+||+|+.+.+.....++..+.+.++
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~---- 141 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDA---- 141 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT----
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHC----
Confidence 4444444445789999999999998753 332 2456666777899999999999986432001123333333322
Q ss_pred ccCCceEEEeecccCCCCCCCCCCCCCcchhHHHH
Q 005713 240 EQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESI 274 (681)
Q Consensus 240 ~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I 274 (681)
.++++++||++|. |+++|++.+
T Consensus 142 ---g~~~~~~SA~~g~----------gi~~L~~~l 163 (302)
T 2yv5_A 142 ---GYDVLKVSAKTGE----------GIDELVDYL 163 (302)
T ss_dssp ---TCEEEECCTTTCT----------THHHHHHHT
T ss_pred ---CCeEEEEECCCCC----------CHHHHHhhc
Confidence 3579999999999 777777664
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.07 E-value=5.8e-06 Score=85.59 Aligned_cols=102 Identities=19% Similarity=0.230 Sum_probs=68.7
Q ss_pred EEeCCCcc-chhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHH
Q 005713 156 IIDTPGHS-DFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIE 234 (681)
Q Consensus 156 iiDTPGh~-df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~ 234 (681)
|-+.|||. ....++...+..+|+++.|+||.++.......+-+.+ .++|.++|+||+|+.+. ...+...+.+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~---~~~~~~~~~~~~ 77 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADA---AVTQQWKEHFEN 77 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCH---HHHHHHHHHHHT
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCH---HHHHHHHHHHHh
Confidence 44579996 5678888999999999999999987665433322222 47999999999998752 122222233321
Q ss_pred hhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCC
Q 005713 235 LNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIP 279 (681)
Q Consensus 235 l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp 279 (681)
.+++++++||++|. |+..|++.+.+.++
T Consensus 78 -------~g~~~i~iSA~~~~----------gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 78 -------QGIRSLSINSVNGQ----------GLNQIVPASKEILQ 105 (282)
T ss_dssp -------TTCCEEECCTTTCT----------TGGGHHHHHHHHHH
T ss_pred -------cCCcEEEEECCCcc----------cHHHHHHHHHHHHH
Confidence 23579999999998 88998888876654
No 224
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.96 E-value=6.5e-06 Score=93.27 Aligned_cols=108 Identities=19% Similarity=0.175 Sum_probs=65.0
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFG 166 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~ 166 (681)
.....|+|+|.+++|||||+|+|++....+...++.. ...+|+....... ....+..+.|+||||..+..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~---------~~T~gi~~~~~~~-~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQ---------SHTKGIWMWCVPH-PKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSS---------CCCCSEEEEEEEC-SSSTTCEEEEEEECCBCCGG
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCC---------CceeEEEEeeccc-ccCCCceEEEecCCCcCccc
Confidence 3567899999999999999999987653322111110 0111322111000 01256789999999986543
Q ss_pred H------HHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcC
Q 005713 167 G------EVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFG 204 (681)
Q Consensus 167 ~------e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~g 204 (681)
. ....++...-..++|+|+..++..+....+..+.+.+
T Consensus 106 ~~~~~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e~~ 149 (592)
T 1f5n_A 106 KGDNQNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTELT 149 (592)
T ss_dssp GCCCTTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHTHH
T ss_pred ccchhHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHHHh
Confidence 2 1111233322347889998888888887777766543
No 225
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.91 E-value=1.9e-05 Score=86.63 Aligned_cols=123 Identities=18% Similarity=0.173 Sum_probs=70.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCcc-ccccceeeeeeccch-----------hhcccceeEEeee-----------
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVF-RDNQTVKERIMDSND-----------LERERGITILSKN----------- 144 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~-~~~~~~~~~~~D~~~-----------~E~erGiTi~~~~----------- 144 (681)
..+.|+++|+.|+||||++..|....... .. .+ .+.|.+. .....|+.+....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~--kV--llvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~ 174 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKK--KV--LVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNA 174 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCC--CE--EEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC--eE--EEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHH
Confidence 46789999999999999999998543211 00 00 0111110 1122344433321
Q ss_pred --eEEeeCCeEEEEEeCCCccchhHHHHHH------HhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCE-EEEEEeecC
Q 005713 145 --TSITYNDTKINIIDTPGHSDFGGEVERI------LNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKID 215 (681)
Q Consensus 145 --~~~~~~~~~i~iiDTPGh~df~~e~~~~------l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip-~ivviNKiD 215 (681)
..+.+.++.+.||||||...+...+... +..+|.+++|+|+..+. ......+... .+++ .-+|+||+|
T Consensus 175 ~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f~-~~l~i~gvVlnK~D 251 (433)
T 2xxa_A 175 ALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAFN-EALPLTGVVLTKVD 251 (433)
T ss_dssp HHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHHH-HHSCCCCEEEECTT
T ss_pred HHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHHh-ccCCCeEEEEecCC
Confidence 0122357899999999986654333332 33578899999998762 2222222222 1355 357899999
Q ss_pred CC
Q 005713 216 RP 217 (681)
Q Consensus 216 ~~ 217 (681)
..
T Consensus 252 ~~ 253 (433)
T 2xxa_A 252 GD 253 (433)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 226
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.88 E-value=1.8e-05 Score=82.46 Aligned_cols=122 Identities=18% Similarity=0.187 Sum_probs=70.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccch-----------hhcccceeEEeee-------------
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND-----------LERERGITILSKN------------- 144 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~-----------~E~erGiTi~~~~------------- 144 (681)
...|+++|+.|+||||++..|........ ..+ .+.|.+. .....|+.+....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g--~~v--~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l 173 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG--FKV--GLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGV 173 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT--CCE--EEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeE--EEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHH
Confidence 45789999999999999999975432100 011 1111110 0111244332211
Q ss_pred eEEeeCCeEEEEEeCCCccc--hhHHHH------HHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCE-EEEEEeecC
Q 005713 145 TSITYNDTKINIIDTPGHSD--FGGEVE------RILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKID 215 (681)
Q Consensus 145 ~~~~~~~~~i~iiDTPGh~d--f~~e~~------~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip-~ivviNKiD 215 (681)
..+.+.++.+.||||||... ....+. ..+..+|.+++|+|+..+ .+.....+...+ .++ ..+|+||+|
T Consensus 174 ~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D 250 (297)
T 1j8m_F 174 EKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMD 250 (297)
T ss_dssp HHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGG
T ss_pred HHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCC
Confidence 01123678899999999876 322221 234568999999999754 233333333333 466 778999999
Q ss_pred CC
Q 005713 216 RP 217 (681)
Q Consensus 216 ~~ 217 (681)
..
T Consensus 251 ~~ 252 (297)
T 1j8m_F 251 GT 252 (297)
T ss_dssp GC
T ss_pred CC
Confidence 64
No 227
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.83 E-value=2.4e-05 Score=84.14 Aligned_cols=109 Identities=17% Similarity=0.115 Sum_probs=67.6
Q ss_pred EEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCc--ccchhhHHH
Q 005713 153 KINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARP--DYVINSTFE 230 (681)
Q Consensus 153 ~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~--~~~~~ei~~ 230 (681)
++.-+++| +++|...+..+...++++|+|+|+.+.......++.+.+ .+.|+++|+||+|+..... +...+.+..
T Consensus 50 ~~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~~~~~~~~~~~l~~ 126 (369)
T 3ec1_A 50 EVQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPRSVKYPKLLRWMRR 126 (369)
T ss_dssp ----------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCTTCCHHHHHHHHHH
T ss_pred cccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCCccCHHHHHHHHHH
Confidence 34445554 789999999999999999999999875432222222222 2789999999999975421 112222222
Q ss_pred HHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 231 LFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 231 ~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.+.+.+.. ..+++++||++|+ |+..|++.+.++.
T Consensus 127 ~~~~~g~~----~~~v~~iSA~~g~----------gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 127 MAEELGLC----PVDVCLVSAAKGI----------GMAKVMEAINRYR 160 (369)
T ss_dssp HHHTTTCC----CSEEEECBTTTTB----------THHHHHHHHHHHH
T ss_pred HHHHcCCC----cccEEEEECCCCC----------CHHHHHHHHHhhc
Confidence 23332221 1268999999999 8999999987665
No 228
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=97.82 E-value=8e-05 Score=65.36 Aligned_cols=78 Identities=18% Similarity=0.246 Sum_probs=57.4
Q ss_pred CceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEE--eccc
Q 005713 287 GALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGID 364 (681)
Q Consensus 287 ~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~ 364 (681)
.|..+.|..+..--| |.+..|||.+|+|++|+.| +.+. ...+|++|. .+..++++|.|||.|++ .|..
T Consensus 33 ~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V---Pg~~--~vg~VkSIE----~~~e~v~eA~~GdnVai~Ikg~~ 102 (116)
T 1xe1_A 33 PAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV---KGPS--GIGGIVRIE----RNREKVEFAIAGDRIGISIEGKI 102 (116)
T ss_dssp CSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE---ECSS--CEEEEEEEE----ETTEEESEEETTCEEEEEEESCC
T ss_pred CcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc---CCCc--eEEEEEEEE----ECCcCcCCcCCCCEEEEEEECCc
Confidence 455555555333333 8899999999999999999 4441 124888984 46778999999999999 4544
Q ss_pred -ccccCCeeec
Q 005713 365 -DIQIGETIAD 374 (681)
Q Consensus 365 -~~~~Gdtl~~ 374 (681)
++..||+|..
T Consensus 103 ~~I~~GdVLyv 113 (116)
T 1xe1_A 103 GKVKKGDVLEI 113 (116)
T ss_dssp CCCCTTCEEEE
T ss_pred cccCCCcEEEE
Confidence 7888998864
No 229
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.79 E-value=8.3e-05 Score=76.23 Aligned_cols=105 Identities=8% Similarity=0.008 Sum_probs=72.5
Q ss_pred CCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHH----HH---HH-cCCEEEEEEee-cCCCCCCcccchhhHHH
Q 005713 160 PGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLK----KA---LE-FGHAVVVVVNK-IDRPSARPDYVINSTFE 230 (681)
Q Consensus 160 PGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~----~~---~~-~gip~ivviNK-iD~~~~~~~~~~~ei~~ 230 (681)
.|+..+...+..++..+|++|+|||+++......++.+. .+ .. .+.|++|+.|| -|++++-. ..++.+
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams---~~EI~e 271 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP---CFYLAH 271 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCC---HHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCC---HHHHHH
Confidence 478889999999999999999999998753322333222 22 11 48999999997 58865532 233333
Q ss_pred HHHHhhcccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhCCC
Q 005713 231 LFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPG 280 (681)
Q Consensus 231 ~~~~l~~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~lp~ 280 (681)
.+ +...-...+-+..+||++|. |+.+-++++.+.+..
T Consensus 272 ~L---~L~~l~r~W~Iq~csA~tGe----------GL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 272 EL---HLNLLNHPWLVQDTEAETLT----------GFLNGIEWILEEVES 308 (312)
T ss_dssp HT---TGGGGCSCEEEEEEETTTCT----------THHHHHHHHHHHSCC
T ss_pred Hc---CCccCCCcEEEEecccCCCc----------CHHHHHHHHHHHHHh
Confidence 32 22211246789999999999 999999999988743
No 230
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.70 E-value=3e-05 Score=83.32 Aligned_cols=100 Identities=17% Similarity=0.052 Sum_probs=66.0
Q ss_pred CccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHH----HHHhh
Q 005713 161 GHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFEL----FIELN 236 (681)
Q Consensus 161 Gh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~----~~~l~ 236 (681)
..++|...+..+.+.+|++|+|+|+.+.. ..+...+.... .++|+++|+||+|+..... ..+++.+. +...+
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~~--~~~~~~~~l~~~~~~~g 130 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-GSWLPGLHRFV-GNNKVLLVGNKADLIPKSV--KHDKVKHWMRYSAKQLG 130 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-HHCCTTHHHHS-SSSCEEEEEECGGGSCTTS--CHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-ccHHHHHHHHh-CCCcEEEEEEChhcCCccc--CHHHHHHHHHHHHHHcC
Confidence 45789999999999999999999998732 11111112211 2789999999999965331 12223332 22222
Q ss_pred cccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhhC
Q 005713 237 ATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCI 278 (681)
Q Consensus 237 ~~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~l 278 (681)
.. ..+++++||++|+ |+.+|++.+.++.
T Consensus 131 ~~----~~~v~~iSA~~g~----------gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 131 LK----PEDVFLISAAKGQ----------GIAELADAIEYYR 158 (368)
T ss_dssp CC----CSEEEECCTTTCT----------THHHHHHHHHHHH
T ss_pred CC----cccEEEEeCCCCc----------CHHHHHhhhhhhc
Confidence 21 1268999999999 8999999987654
No 231
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.65 E-value=4.3e-05 Score=79.01 Aligned_cols=59 Identities=24% Similarity=0.309 Sum_probs=36.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccc
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSD 164 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~d 164 (681)
...+|+++|.+|+|||||+|+|++........ ..|+|....... . +..+.+|||||..+
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~---------------~~g~T~~~~~~~--~-~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGD---------------RPGITTSQQWVK--V-GKELELLDTPGILW 177 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC---------------------------CCEE--E-TTTEEEEECCCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCC---------------CCCeeeeeEEEE--e-CCCEEEEECcCcCC
Confidence 45789999999999999999998754221111 125555443222 2 34789999999854
No 232
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.64 E-value=2.2e-05 Score=80.27 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=60.9
Q ss_pred CCCccch-hHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhc
Q 005713 159 TPGHSDF-GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNA 237 (681)
Q Consensus 159 TPGh~df-~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~ 237 (681)
-|||... ..++...+..+|.+|+|+||.++.......+ . +. ++|.++|+||+|+.+. ...++..+.+.+
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~-ll--~k~~iivlNK~DL~~~---~~~~~~~~~~~~--- 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-D-FS--RKETIILLNKVDIADE---KTTKKWVEFFKK--- 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-C-CT--TSEEEEEEECGGGSCH---HHHHHHHHHHHH---
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-H-hc--CCCcEEEEECccCCCH---HHHHHHHHHHHH---
Confidence 3898644 4678889999999999999988655432211 1 11 8999999999998752 122233333332
Q ss_pred ccccCCceEEEeecccCCCCCCCCCCCCCcchhHHHHHhh
Q 005713 238 TDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRC 277 (681)
Q Consensus 238 ~~~~~~~pvi~~SA~~G~~~~~~~~~~~gi~~Ll~~I~~~ 277 (681)
..+|+ ++||++|. |+..|++.+...
T Consensus 74 ----~g~~v-~iSa~~~~----------gi~~L~~~l~~~ 98 (262)
T 3cnl_A 74 ----QGKRV-ITTHKGEP----------RKVLLKKLSFDR 98 (262)
T ss_dssp ----TTCCE-EECCTTSC----------HHHHHHHHCCCT
T ss_pred ----cCCeE-EEECCCCc----------CHHHHHHHHHHh
Confidence 13567 99999998 888887776443
No 233
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.58 E-value=0.00011 Score=71.37 Aligned_cols=65 Identities=12% Similarity=0.034 Sum_probs=52.5
Q ss_pred CCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHc-----CCEEEEEEeecCCC
Q 005713 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF-----GHAVVVVVNKIDRP 217 (681)
Q Consensus 150 ~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~-----gip~ivviNKiD~~ 217 (681)
..+.+.|||||+.. ......++..+|.+|+++...... ..+...++.+.+. ++++.+|+|++|..
T Consensus 74 ~~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 74 ADYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TTSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 35789999999876 446677889999999999988776 7777777777755 36889999999953
No 234
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.54 E-value=0.00028 Score=74.37 Aligned_cols=152 Identities=18% Similarity=0.231 Sum_probs=78.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeecc---chh------hcccceeEEeeeeEE-----------
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDS---NDL------ERERGITILSKNTSI----------- 147 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~---~~~------E~erGiTi~~~~~~~----------- 147 (681)
+...|+++|+.|+|||||+..|.+..... .+.+.-.-.|. ... -+..|+.+.......
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~--~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH--GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 35679999999999999999998642211 11111000011 001 112243332211110
Q ss_pred --eeCCeEEEEEeCCCccc----hhHHHHHHHh--hcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCCC
Q 005713 148 --TYNDTKINIIDTPGHSD----FGGEVERILN--MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSA 219 (681)
Q Consensus 148 --~~~~~~i~iiDTPGh~d----f~~e~~~~l~--~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~~ 219 (681)
...++.+.++||+|... ...++....+ ..|-.++++|+..+- +....++...+.--..++++||+|.. +
T Consensus 206 ~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD~~-a 282 (328)
T 3e70_C 206 HAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLDAD-A 282 (328)
T ss_dssp HHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGGGC-S
T ss_pred HHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcCCc-c
Confidence 01245678899999743 3333332222 368899999987662 33333333332212347789999963 2
Q ss_pred CcccchhhHHHHHHHhhcccccCCceEEEeecccCCCC
Q 005713 220 RPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAG 257 (681)
Q Consensus 220 ~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~SA~~G~~~ 257 (681)
.... +....... ..|+.|++ +|..+
T Consensus 283 ~~G~----~l~~~~~~-------~~pi~~i~--~Ge~v 307 (328)
T 3e70_C 283 RGGA----ALSISYVI-------DAPILFVG--VGQGY 307 (328)
T ss_dssp CCHH----HHHHHHHH-------TCCEEEEE--CSSST
T ss_pred chhH----HHHHHHHH-------CCCEEEEe--CCCCc
Confidence 2222 22222222 35788887 66643
No 235
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.49 E-value=0.00031 Score=80.35 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=39.2
Q ss_pred eEEEEEeCCCccch---------hHHH----HHHHhhc-ceEEEEeeCCCCCch-hhHHHHHHHHHcCCEEEEEEeecCC
Q 005713 152 TKINIIDTPGHSDF---------GGEV----ERILNMV-EGVLLVVDSVEGPMP-QTRFVLKKALEFGHAVVVVVNKIDR 216 (681)
Q Consensus 152 ~~i~iiDTPGh~df---------~~e~----~~~l~~a-D~~llVvDa~~g~~~-qt~~~l~~~~~~gip~ivviNKiD~ 216 (681)
-.+.|+|.||.... ...+ ..++..- ..+++++++...... ....+++.+...|.+.|+|+||.|+
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dl 226 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDL 226 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGG
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhh
Confidence 46999999985321 1222 2333332 455666665544332 2234445555557899999999998
Q ss_pred CCC
Q 005713 217 PSA 219 (681)
Q Consensus 217 ~~~ 219 (681)
...
T Consensus 227 v~~ 229 (608)
T 3szr_A 227 VDK 229 (608)
T ss_dssp SSS
T ss_pred cCc
Confidence 743
No 236
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.43 E-value=5.4e-05 Score=77.40 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=36.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccch
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDF 165 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df 165 (681)
.+++++|.+|+|||||+++|++........ ..|+|..... +.. +..+.||||||..+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~---------------~~g~T~~~~~--~~~-~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA---------------QPGITKGIQW--FSL-ENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-------------------------CCSCE--EEC-TTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC---------------CCCCccceEE--EEe-CCCEEEEECCCcccC
Confidence 689999999999999999999754321110 1144443321 222 357899999998764
No 237
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=97.30 E-value=0.00047 Score=58.84 Aligned_cols=81 Identities=20% Similarity=0.179 Sum_probs=69.3
Q ss_pred EEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEe--ccccccc
Q 005713 291 MLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC--GIDDIQI 368 (681)
Q Consensus 291 ~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~--gl~~~~~ 368 (681)
+.|-+++..+..|.++-++|.+|.++.+..+.+...+......++.+|.. .+.++.++.+|.=|+|. +..|++.
T Consensus 9 AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~vI~eG~i~SLkr----~KddV~EV~~G~ECGi~l~~~~dik~ 84 (99)
T 1d1n_A 9 AEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGIVVYEGEIDSLKR----YKDDVREVAQGYECGLTIKNFNDIKE 84 (99)
T ss_dssp EEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSSEEEEEECSEEEC----SSSCCSCCBTTCEEEEECTTCSSCSS
T ss_pred EEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCEEEEEeEEhhhcc----cccccceECCCcEEEEEEcCcCCCCC
Confidence 45666777788899999999999999999999999998777788999854 45689999999999994 6789999
Q ss_pred CCeeecc
Q 005713 369 GETIADK 375 (681)
Q Consensus 369 Gdtl~~~ 375 (681)
||+|-.-
T Consensus 85 GD~Ie~y 91 (99)
T 1d1n_A 85 GDVIEAY 91 (99)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 9998543
No 238
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.25 E-value=0.00049 Score=72.35 Aligned_cols=121 Identities=21% Similarity=0.328 Sum_probs=65.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccch-----------hhc---ccceeEE-eeee-------
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND-----------LER---ERGITIL-SKNT------- 145 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~-----------~E~---erGiTi~-~~~~------- 145 (681)
....|+++|..|+||||++..|....... ...+ .+.|.+. .-. ..++.+. ....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~--g~kV--llid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~ 179 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL--GYKV--LIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASV 179 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT--TCCE--EEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeE--EEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHH
Confidence 34579999999999999999987542211 1111 1111100 000 2344443 1110
Q ss_pred ---EE---eeCCeEEEEEeCCCccchhH----HHHH---HH-----hhcceEEEEeeCCCCCchhhHHHHHHHHHcC--C
Q 005713 146 ---SI---TYNDTKINIIDTPGHSDFGG----EVER---IL-----NMVEGVLLVVDSVEGPMPQTRFVLKKALEFG--H 205 (681)
Q Consensus 146 ---~~---~~~~~~i~iiDTPGh~df~~----e~~~---~l-----~~aD~~llVvDa~~g~~~qt~~~l~~~~~~g--i 205 (681)
.+ ...++.+.||||||...... ++.. .+ ..+|.+++|+|+..+ .. .+..+..+. .
T Consensus 180 ~~~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~---~l~~~~~~~~~~ 254 (320)
T 1zu4_A 180 VFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QN---GVIQAEEFSKVA 254 (320)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HH---HHHHHHHHTTTS
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HH---HHHHHHHHhhcC
Confidence 00 12468899999999755432 2221 11 136889999998754 22 223333332 3
Q ss_pred E-EEEEEeecCCC
Q 005713 206 A-VVVVVNKIDRP 217 (681)
Q Consensus 206 p-~ivviNKiD~~ 217 (681)
+ .-+|+||+|..
T Consensus 255 ~i~GvVltk~d~~ 267 (320)
T 1zu4_A 255 DVSGIILTKMDST 267 (320)
T ss_dssp CCCEEEEECGGGC
T ss_pred CCcEEEEeCCCCC
Confidence 3 34789999963
No 239
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.24 E-value=0.00047 Score=76.14 Aligned_cols=123 Identities=20% Similarity=0.249 Sum_probs=64.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccch---------hhcccceeEEeeeeEE------------
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND---------LERERGITILSKNTSI------------ 147 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~---------~E~erGiTi~~~~~~~------------ 147 (681)
...|+|+|..|+|||||+..|.+.... ..+.+.-.-.|... ....+++.+.......
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 347999999999999999999864221 11111100011110 0112344443222110
Q ss_pred -eeCCeEEEEEeCCCccchh----HHHHHHH---h-----hcceEEEEeeCCCCCchhhHHHHHHHH-HcCCEEEEEEee
Q 005713 148 -TYNDTKINIIDTPGHSDFG----GEVERIL---N-----MVEGVLLVVDSVEGPMPQTRFVLKKAL-EFGHAVVVVVNK 213 (681)
Q Consensus 148 -~~~~~~i~iiDTPGh~df~----~e~~~~l---~-----~aD~~llVvDa~~g~~~qt~~~l~~~~-~~gip~ivviNK 213 (681)
...++.+.|+||+|..... .++.... + ..+-++||+|+..|- .....++... ..++. .+++||
T Consensus 371 a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq--~al~~ak~f~~~~~it-gvIlTK 447 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQAKLFHEAVGLT-GITLTK 447 (503)
T ss_dssp HHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH--HHHHHHHHHHHHTCCS-EEEEEC
T ss_pred HHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH--HHHHHHHHHHhhcCCC-EEEEEc
Confidence 1245678999999974322 2222222 2 134689999988762 1222233332 23443 568999
Q ss_pred cCC
Q 005713 214 IDR 216 (681)
Q Consensus 214 iD~ 216 (681)
+|.
T Consensus 448 LD~ 450 (503)
T 2yhs_A 448 LDG 450 (503)
T ss_dssp GGG
T ss_pred CCC
Confidence 995
No 240
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.16 E-value=0.00069 Score=73.81 Aligned_cols=125 Identities=22% Similarity=0.230 Sum_probs=66.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccc---hh------hcccceeEEeeee-----E-----E-
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSN---DL------ERERGITILSKNT-----S-----I- 147 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~---~~------E~erGiTi~~~~~-----~-----~- 147 (681)
....|+++|..|+||||++..|........ ..+.---.|.. .. ....|+.+..... . +
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g--~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~ 174 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHH
Confidence 346789999999999999999876432111 11100000100 00 1112343332110 0 1
Q ss_pred --eeCCeEEEEEeCCCccchh----HHHHHH--HhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCE-EEEEEeecCCC
Q 005713 148 --TYNDTKINIIDTPGHSDFG----GEVERI--LNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRP 217 (681)
Q Consensus 148 --~~~~~~i~iiDTPGh~df~----~e~~~~--l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip-~ivviNKiD~~ 217 (681)
...++.+.||||||..... .++... ...+|.++||+|+..+ .......+.... .++ .-||+||+|..
T Consensus 175 ~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~-~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 175 KARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGD 250 (425)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHH-HTCCCEEEEESGGGC
T ss_pred HHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHHh-cCCceEEEEeCcCCc
Confidence 1256789999999965432 222222 2247899999998765 222222222222 243 56789999953
No 241
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.12 E-value=0.00041 Score=72.40 Aligned_cols=77 Identities=13% Similarity=0.149 Sum_probs=53.9
Q ss_pred HHhhcceEEEEeeCCCCCchhh--HHHHHHHHHcCCEEEEEEeecCCCCCCcc-cchhhHHHHHHHhhcccccCCceEEE
Q 005713 172 ILNMVEGVLLVVDSVEGPMPQT--RFVLKKALEFGHAVVVVVNKIDRPSARPD-YVINSTFELFIELNATDEQCDFQAIY 248 (681)
Q Consensus 172 ~l~~aD~~llVvDa~~g~~~qt--~~~l~~~~~~gip~ivviNKiD~~~~~~~-~~~~ei~~~~~~l~~~~~~~~~pvi~ 248 (681)
.+..+|.+++|+|+.++..... .+.+..+...++|+++|+||+|+.+.... +.++++.+.+..++ +++++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g-------~~v~~ 155 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG-------YDVYL 155 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT-------CCEEE
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC-------CeEEE
Confidence 5788999999999987655443 23444455679999999999999754210 12344455554433 46999
Q ss_pred eecccCC
Q 005713 249 ASGIQGK 255 (681)
Q Consensus 249 ~SA~~G~ 255 (681)
+||.+|.
T Consensus 156 ~sa~~~~ 162 (307)
T 1t9h_A 156 TSSKDQD 162 (307)
T ss_dssp CCHHHHT
T ss_pred EecCCCC
Confidence 9999998
No 242
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.98 E-value=0.0016 Score=67.82 Aligned_cols=125 Identities=20% Similarity=0.210 Sum_probs=64.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccch---hh------cccceeEEeeeeE----------E-
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND---LE------RERGITILSKNTS----------I- 147 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~---~E------~erGiTi~~~~~~----------~- 147 (681)
+...|+++|+.|+|||||+..|.+..... .+.+.-.-.|... .+ +.+++.+...... +
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~--~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL--GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 34679999999999999999998643211 1111100001000 00 1123332211100 0
Q ss_pred --eeCCeEEEEEeCCCccchh----HHHHH---HH-----hhcceEEEEeeCCCCCchhhHHHHHHHH-HcCCEEEEEEe
Q 005713 148 --TYNDTKINIIDTPGHSDFG----GEVER---IL-----NMVEGVLLVVDSVEGPMPQTRFVLKKAL-EFGHAVVVVVN 212 (681)
Q Consensus 148 --~~~~~~i~iiDTPGh~df~----~e~~~---~l-----~~aD~~llVvDa~~g~~~qt~~~l~~~~-~~gip~ivviN 212 (681)
...+..+.++||+|..+.. .+... ++ ...+.+++++|+..+.. ....+.... ..++ .++++|
T Consensus 179 ~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~-t~iivT 255 (304)
T 1rj9_A 179 AMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGL-TGVIVT 255 (304)
T ss_dssp HHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCC-SEEEEE
T ss_pred HHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCC-cEEEEE
Confidence 1124567899999965332 22221 11 12566899999876632 233333333 3355 577899
Q ss_pred ecCCC
Q 005713 213 KIDRP 217 (681)
Q Consensus 213 KiD~~ 217 (681)
|.|..
T Consensus 256 h~d~~ 260 (304)
T 1rj9_A 256 KLDGT 260 (304)
T ss_dssp CTTSS
T ss_pred CCccc
Confidence 99964
No 243
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.98 E-value=0.00072 Score=66.31 Aligned_cols=121 Identities=10% Similarity=0.106 Sum_probs=74.3
Q ss_pred EEEEE-eCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcc------cce--eEEee-eeEEeeCCeEEEEEeCC
Q 005713 91 NIAII-AHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERE------RGI--TILSK-NTSITYNDTKINIIDTP 160 (681)
Q Consensus 91 nV~Ii-G~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~e------rGi--Ti~~~-~~~~~~~~~~i~iiDTP 160 (681)
.|+|+ +..|+||||+.-.|....... + .--++|.+....- ... .+... ...--...+.+.|+|||
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~---g--~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p 76 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQ---G--ETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQ 76 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTT---S--CEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEE
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhc---C--CEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCC
Confidence 35665 668999999998887543211 1 1233333321100 000 00000 00001245789999999
Q ss_pred Cc-cchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHc-CCEEEEEEeecCCCC
Q 005713 161 GH-SDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF-GHAVVVVVNKIDRPS 218 (681)
Q Consensus 161 Gh-~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~-gip~ivviNKiD~~~ 218 (681)
+. ... .+..++..+|.+|+++.+.......+...++.+.+. +.++.+|+|++|...
T Consensus 77 ~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 77 ARPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYP 134 (209)
T ss_dssp CCCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCTT
T ss_pred CCcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCcc
Confidence 87 443 456688999999999998765556666777777763 678899999999643
No 244
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.97 E-value=0.0012 Score=68.95 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=21.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
...|+++|+.|+||||++..|...
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHH
Confidence 457899999999999999998764
No 245
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=96.97 E-value=0.0026 Score=56.13 Aligned_cols=83 Identities=10% Similarity=0.111 Sum_probs=68.5
Q ss_pred EEEEEEeeecCCCce---EEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEE--eccc
Q 005713 290 QMLATNLEYDEHKGR---IAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAV--CGID 364 (681)
Q Consensus 290 ~~~V~~~~~d~~~G~---v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i--~gl~ 364 (681)
.+.|-+++..+..|+ |+=++|.+|.|+.+..+.+...+......++.+|.. .+.++.++.+|.=|+| .+..
T Consensus 12 ~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~vI~eG~i~SLkr----fKdDVkEV~~G~ECGi~l~~fn 87 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQVIWKGSLTSLKH----HKDDISVIKTGMDCGLSLDEEK 87 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTEEEEEECCSEEES----SSSCCSEECTTCEEEEECSCTT
T ss_pred EEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCEEEEEeEehhhcc----cccccceecCCCEEEEEEccCC
Confidence 345666666666677 999999999999999999999987777778888854 4568999999999999 4678
Q ss_pred -ccccCCeeeccC
Q 005713 365 -DIQIGETIADKV 376 (681)
Q Consensus 365 -~~~~Gdtl~~~~ 376 (681)
|++.||+|-.-.
T Consensus 88 iDik~GDiIE~ye 100 (120)
T 2crv_A 88 VEFKPGDQVICYE 100 (120)
T ss_dssp SCCCTTEEEEEEC
T ss_pred CCCCCCCEEEEEE
Confidence 999999996543
No 246
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.92 E-value=0.0023 Score=70.11 Aligned_cols=105 Identities=19% Similarity=0.186 Sum_probs=59.5
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhc----------------CccccccceeeeeeccchhhcccceeEEeeeeEEee-
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQA----------------KVFRDNQTVKERIMDSNDLERERGITILSKNTSITY- 149 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~----------------~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~- 149 (681)
.++.-|+|+|..++|||||+|+|++.. ..+....+. .-..+||-+......+..
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~---------~~~T~GIw~~~~p~~~~~~ 135 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGS---------ERETTGIQIWSEIFLINKP 135 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSS---------CCCCCEEEEESSCEEEECS
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCC---------CCceeEEEEecCccccccC
Confidence 356779999999999999999999751 011111111 112346655544333332
Q ss_pred --CCeEEEEEeCCCccchhHHH-----HHHHhh--cceEEEEeeCCCCCchhhHHHHHHHHH
Q 005713 150 --NDTKINIIDTPGHSDFGGEV-----ERILNM--VEGVLLVVDSVEGPMPQTRFVLKKALE 202 (681)
Q Consensus 150 --~~~~i~iiDTPGh~df~~e~-----~~~l~~--aD~~llVvDa~~g~~~qt~~~l~~~~~ 202 (681)
.+..+.++||||..+-.... ..++.. ++ ++|+.....+.......|....+
T Consensus 136 ~~~~~~vvllDTeG~~~~~~~~~~d~~ifal~~lLSs--~~IyN~~~~i~~~~l~~L~~~~e 195 (447)
T 3q5d_A 136 DGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISS--IQVYNLSQNVQEDDLQHLQLFTE 195 (447)
T ss_dssp SSCEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHCS--EEEEEESSSCCHHHHHHHHHHHH
T ss_pred CCCcceEEEEcCCcccccccchhhhHHHHHHHHHHhh--HHHHhhcccccHHHHHHHHHHHH
Confidence 23679999999975543211 122332 44 44555555666666655554443
No 247
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.92 E-value=0.0013 Score=68.37 Aligned_cols=125 Identities=12% Similarity=0.161 Sum_probs=63.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccch--------h---hcccceeEEeee-------eEEee
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND--------L---ERERGITILSKN-------TSITY 149 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~--------~---E~erGiTi~~~~-------~~~~~ 149 (681)
....|+++|+.|+||||++..|........ ...+ .+.|.+. . ....|+.+.... .--..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~-G~~V--~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~ 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEK-HKKI--AFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTT-CCCE--EEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCEE--EEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh
Confidence 456899999999999999999875422100 0011 0001000 0 001122111000 00012
Q ss_pred CCeEEEEEeCCCccchhHH----HHHHHh--hcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCC
Q 005713 150 NDTKINIIDTPGHSDFGGE----VERILN--MVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRP 217 (681)
Q Consensus 150 ~~~~i~iiDTPGh~df~~e----~~~~l~--~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~ 217 (681)
.++.+.|+||||....... +...+. ..|.+++|+|+..+.. ....+.+.....++ .-+++||+|..
T Consensus 181 ~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~-~giVltk~D~~ 252 (296)
T 2px0_A 181 SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPV-NQYIFTKIDET 252 (296)
T ss_dssp GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCC-CEEEEECTTTC
T ss_pred cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCC-CEEEEeCCCcc
Confidence 5678999999997654322 222332 2577899999876521 11111111111222 34567999965
No 248
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.56 E-value=0.0034 Score=65.11 Aligned_cols=123 Identities=22% Similarity=0.257 Sum_probs=64.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccc-----------hhhcccceeEEeee-----eE-----
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSN-----------DLERERGITILSKN-----TS----- 146 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~-----------~~E~erGiTi~~~~-----~~----- 146 (681)
....++++|..|+||||++..|....... ...+ .+.|.+ ..-.+-|+.+.... ..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v--~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~ 172 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRP--LLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRV 172 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHT--TCCE--EEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeE--EEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHH
Confidence 34578999999999999999987642211 0111 000000 00011233332110 00
Q ss_pred ---EeeCCeEEEEEeCCCccchh----HHHHHHH--hhcceEEEEeeCCCCCchhhHHHHHHHHHcCCE-EEEEEeecCC
Q 005713 147 ---ITYNDTKINIIDTPGHSDFG----GEVERIL--NMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDR 216 (681)
Q Consensus 147 ---~~~~~~~i~iiDTPGh~df~----~e~~~~l--~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip-~ivviNKiD~ 216 (681)
....++.+.|+||||..... .++.... ..+|.+++|+|+..+ .......+.... .++ .-+|+||+|.
T Consensus 173 l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~ 249 (295)
T 1ls1_A 173 EEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDG 249 (295)
T ss_dssp HHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGG
T ss_pred HHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCC
Confidence 01146789999999864321 2222222 247889999998753 222222222222 233 4578999996
Q ss_pred C
Q 005713 217 P 217 (681)
Q Consensus 217 ~ 217 (681)
.
T Consensus 250 ~ 250 (295)
T 1ls1_A 250 D 250 (295)
T ss_dssp C
T ss_pred C
Confidence 4
No 249
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.47 E-value=0.012 Score=59.50 Aligned_cols=65 Identities=9% Similarity=0.084 Sum_probs=48.5
Q ss_pred CCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHc--CCEEEEEEeecCC
Q 005713 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF--GHAVVVVVNKIDR 216 (681)
Q Consensus 150 ~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~--gip~ivviNKiD~ 216 (681)
..+.+.|||||+... .....++..+|.+|+++.+...........++.+... +.++.+|+|+++.
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccC
Confidence 457899999998653 3466788889999999998665445555666666666 4578899999953
No 250
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=96.45 E-value=0.0066 Score=62.49 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=46.8
Q ss_pred CeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHH------cCCEE-EEEEeecCCC
Q 005713 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALE------FGHAV-VVVVNKIDRP 217 (681)
Q Consensus 151 ~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~------~gip~-ivviNKiD~~ 217 (681)
.+.+.|||||+.... ....++..+|.+|+++.+...........+..+.. .++++ -+|+|+.|..
T Consensus 154 ~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 154 DYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp GCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred CCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 468999999987544 34556778999999999877655555555555544 26774 4889999964
No 251
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=96.34 E-value=0.0015 Score=65.12 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=49.2
Q ss_pred eCCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCC-EEEEEEeecC
Q 005713 149 YNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGH-AVVVVVNKID 215 (681)
Q Consensus 149 ~~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gi-p~ivviNKiD 215 (681)
...+.+.|||||+.... ....++..+|.+|+|+++............+.+...++ .+.+|+||.+
T Consensus 129 ~~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~ 194 (254)
T 3kjh_A 129 LDKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVR 194 (254)
T ss_dssp HTCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEEC
T ss_pred cCCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCC
Confidence 35688999999986544 34567899999999999866444555666666677775 4788999998
No 252
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.29 E-value=0.0047 Score=65.64 Aligned_cols=76 Identities=13% Similarity=0.216 Sum_probs=46.4
Q ss_pred HHhhcceEEEEeeCCCCCch--hhHHHHHHHHHcCCEEEEEEeecCCCCCCcccchhhHHHHHHHhhcccccCCceEEEe
Q 005713 172 ILNMVEGVLLVVDSVEGPMP--QTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYA 249 (681)
Q Consensus 172 ~l~~aD~~llVvDa~~g~~~--qt~~~l~~~~~~gip~ivviNKiD~~~~~~~~~~~ei~~~~~~l~~~~~~~~~pvi~~ 249 (681)
.+..+|.+++| |+...... ....++..+...++|+++|+||+|+.+.......++....|.. ..++++++
T Consensus 127 i~anvD~v~iv-~a~~P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~-------~G~~v~~~ 198 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILPELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRN-------IGYRVLMV 198 (358)
T ss_dssp EEECCCEEEEE-EESTTTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHT-------TTCCEEEC
T ss_pred HHhcCCEEEEE-EeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHh-------CCCcEEEE
Confidence 45778999876 55443221 1223444555679999999999998753211112222333322 34579999
Q ss_pred ecccCC
Q 005713 250 SGIQGK 255 (681)
Q Consensus 250 SA~~G~ 255 (681)
||.+|.
T Consensus 199 Sa~~~~ 204 (358)
T 2rcn_A 199 SSHTQD 204 (358)
T ss_dssp BTTTTB
T ss_pred ecCCCc
Confidence 999998
No 253
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.26 E-value=0.006 Score=63.17 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=45.0
Q ss_pred CCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHH----cCCEEE-EEEeecC
Q 005713 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALE----FGHAVV-VVVNKID 215 (681)
Q Consensus 150 ~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~----~gip~i-vviNKiD 215 (681)
+++.+.|||||+..... .+..++..+|.+|+|+++...........++.+.. .+++++ +|+|+++
T Consensus 155 ~~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~ 224 (307)
T 3end_A 155 DDTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSR 224 (307)
T ss_dssp SSCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCS
T ss_pred ccCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCC
Confidence 35789999999864421 12346788999999998765444455555666654 356655 8999998
No 254
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.05 E-value=0.013 Score=60.90 Aligned_cols=124 Identities=19% Similarity=0.190 Sum_probs=64.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchh------h---cccceeEEeeeeE-E-----------
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDL------E---RERGITILSKNTS-I----------- 147 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~------E---~erGiTi~~~~~~-~----------- 147 (681)
...++++|+.|+|||||+..|.+.... ..+.+.-.-.|.... . ..+++.+...... .
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~ 177 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 177 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHH
Confidence 347899999999999999999865321 111111000111100 0 1124444322211 0
Q ss_pred --eeCCeEEEEEeCCCccchhHHHHH-------HH-----hhcceEEEEeeCCCCCchhhHHHHHHHH-HcCCEEEEEEe
Q 005713 148 --TYNDTKINIIDTPGHSDFGGEVER-------IL-----NMVEGVLLVVDSVEGPMPQTRFVLKKAL-EFGHAVVVVVN 212 (681)
Q Consensus 148 --~~~~~~i~iiDTPGh~df~~e~~~-------~l-----~~aD~~llVvDa~~g~~~qt~~~l~~~~-~~gip~ivviN 212 (681)
...+....++||.|...+...... ++ ...+-++||+|++.|...... ++... ..++. +++++
T Consensus 178 ~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~--~~~~~~~~g~t-~iiiT 254 (302)
T 3b9q_A 178 RGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGIT-GLILT 254 (302)
T ss_dssp HHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCCC-EEEEE
T ss_pred HHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH--HHHHHHhcCCC-EEEEe
Confidence 012345679999997554322211 11 124556999998776554432 23333 34554 56789
Q ss_pred ecCCC
Q 005713 213 KIDRP 217 (681)
Q Consensus 213 KiD~~ 217 (681)
|+|..
T Consensus 255 hlD~~ 259 (302)
T 3b9q_A 255 KLDGS 259 (302)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 99853
No 255
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=95.97 E-value=0.013 Score=65.18 Aligned_cols=105 Identities=15% Similarity=0.182 Sum_probs=79.7
Q ss_pred cchhHHHHHhhCC---CCccccCCceEEEEEEeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeec
Q 005713 267 LGPLFESIMRCIP---GPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEK 343 (681)
Q Consensus 267 i~~Ll~~I~~~lp---~p~~~~~~p~~~~V~~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g 343 (681)
+..|++.+..++. +|.....---.+.|..++..+..|.++-++|..|+++.|..+.+...+......+|.+|.
T Consensus 384 iy~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~~i~~g~i~sl~---- 459 (501)
T 1zo1_I 384 IYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLR---- 459 (501)
T ss_dssp CSHHHHHTHHHHTTTSSTTCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSCCCEEEEBCCEE----
T ss_pred HHHHHHHHHHHHHhhcCceeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCeEEEEEEEehhc----
Confidence 4577777765543 343322223345566788777789999999999999999999998877665567888885
Q ss_pred cceeecceecCCCEEEE--ecccccccCCeeecc
Q 005713 344 FSRVSAEIVAAGDICAV--CGIDDIQIGETIADK 375 (681)
Q Consensus 344 ~~~~~v~~a~aGdiv~i--~gl~~~~~Gdtl~~~ 375 (681)
..+.+++++..|.-|+| .+..+++.||.|-.-
T Consensus 460 ~~k~~v~e~~~g~ecgi~~~~~~~~~~gd~~~~~ 493 (501)
T 1zo1_I 460 RFKDDVNEVRNGMECGIGVKNYNDVRTGDVIEVF 493 (501)
T ss_dssp ETTEEESEEETTCCEEEEBCCCTTCCTTCEEEEC
T ss_pred ccCccccEECCCCEEEEEEcCcCCCCCCCEEEEE
Confidence 45578999999999999 467799999999654
No 256
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.95 E-value=0.003 Score=69.83 Aligned_cols=108 Identities=12% Similarity=0.154 Sum_probs=62.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcc-cceeEEeeeeEEeeCCeEEEEEeCCCccch-
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERE-RGITILSKNTSITYNDTKINIIDTPGHSDF- 165 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~e-rGiTi~~~~~~~~~~~~~i~iiDTPGh~df- 165 (681)
...+|+++|.+|+||||+..+|....+... ......+......+ .| ......+||+.|...|
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~----~~t~~~~~d~~r~~~~g------------~~~~~~ifd~~g~~~~r 101 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG----VPTREFNVGQYRRDMVK------------TYKSFEFFLPDNEEGLK 101 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT----CCEEEEEHHHHHHHHHC------------SCCCGGGGCTTCHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccC----CCceEEecchhhhhhcc------------CCCcccccCCCCHHHHH
Confidence 346899999999999999999986543111 00011111100000 01 1123357898887332
Q ss_pred -hHHH--------HHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEE
Q 005713 166 -GGEV--------ERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVV 211 (681)
Q Consensus 166 -~~e~--------~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivvi 211 (681)
...+ ..++...++.++|+|++......-..++..+.+.+.+++++-
T Consensus 102 ~re~~~~~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~ 156 (469)
T 1bif_A 102 IRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVE 156 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 2222 344555788899999987654444455566667777765543
No 257
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.75 E-value=0.028 Score=59.76 Aligned_cols=124 Identities=19% Similarity=0.204 Sum_probs=64.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccch------hh---cccceeEEeeeeE-E-----------
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSND------LE---RERGITILSKNTS-I----------- 147 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~------~E---~erGiTi~~~~~~-~----------- 147 (681)
...|+++|+.|+|||||+..|.+.... ..+.+.-.-.|... .. ..+++.+...... .
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~ 234 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 234 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHH
Confidence 346899999999999999999875321 11111100011110 00 1234444322111 0
Q ss_pred --eeCCeEEEEEeCCCccchhHHHHH-------HH-----hhcceEEEEeeCCCCCchhhHHHHHHHH-HcCCEEEEEEe
Q 005713 148 --TYNDTKINIIDTPGHSDFGGEVER-------IL-----NMVEGVLLVVDSVEGPMPQTRFVLKKAL-EFGHAVVVVVN 212 (681)
Q Consensus 148 --~~~~~~i~iiDTPGh~df~~e~~~-------~l-----~~aD~~llVvDa~~g~~~qt~~~l~~~~-~~gip~ivviN 212 (681)
...+....++||.|...+...... ++ ...+-++||+|++.|...... ++... ..++. +++++
T Consensus 235 ~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~--~~~~~~~~g~t-~iiiT 311 (359)
T 2og2_A 235 RGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGIT-GLILT 311 (359)
T ss_dssp HHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCCC-EEEEE
T ss_pred HHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH--HHHHHHhcCCe-EEEEe
Confidence 012345679999997554322111 11 124567999998776544332 23333 34554 66789
Q ss_pred ecCCC
Q 005713 213 KIDRP 217 (681)
Q Consensus 213 KiD~~ 217 (681)
|+|..
T Consensus 312 hlD~~ 316 (359)
T 2og2_A 312 KLDGS 316 (359)
T ss_dssp SCTTC
T ss_pred cCccc
Confidence 99853
No 258
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=95.25 E-value=0.051 Score=60.83 Aligned_cols=103 Identities=14% Similarity=0.127 Sum_probs=76.0
Q ss_pred cchhHHHHHhhC---CCCccccCCceEEEEEEeeecCC---CceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEE
Q 005713 267 LGPLFESIMRCI---PGPRIEKDGALQMLATNLEYDEH---KGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFV 340 (681)
Q Consensus 267 i~~Ll~~I~~~l---p~p~~~~~~p~~~~V~~~~~d~~---~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~ 340 (681)
+..|++.+...+ -+|.....-.=.+.|..++..+. .|.|+-++|..|+++.|..+.+...+.....++|.+|.
T Consensus 423 iy~l~~~~~~~~~~~l~~~~~e~~~g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~~i~~g~i~slk- 501 (537)
T 3izy_P 423 IYRLIEDLQEELSSRLPCIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGHVIWKGSLISLK- 501 (537)
T ss_dssp SCCSHHHHHHHHSSSSSCSSSCCCSSEEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSSEEEEEECCCCC-
T ss_pred HHHHHHHHHHHHHhccCCceEEEEEEEEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCEEEEEEEEehhc-
Confidence 456666665443 23332222234555666666543 57899999999999999999999987766667888884
Q ss_pred eeccceeecceecCCCEEEEe--c-ccccccCCeee
Q 005713 341 YEKFSRVSAEIVAAGDICAVC--G-IDDIQIGETIA 373 (681)
Q Consensus 341 ~~g~~~~~v~~a~aGdiv~i~--g-l~~~~~Gdtl~ 373 (681)
..+.+++++..|.-|+|. + ..|++.||+|-
T Consensus 502 ---~~k~~v~ev~~g~ecgi~~~~~~~~~~~gd~ie 534 (537)
T 3izy_P 502 ---HHKDDTSVVKTGMDCGLSLDEEKIEFKVGDAII 534 (537)
T ss_dssp ---CSSCCCSEEETTCEEEEESSSSCSSCSCCCEEE
T ss_pred ---ccCcccceEcCCCEEEEEEcCcccCCCCCCEEE
Confidence 556789999999999994 6 77999999984
No 259
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=95.21 E-value=0.034 Score=56.10 Aligned_cols=67 Identities=18% Similarity=0.035 Sum_probs=50.6
Q ss_pred CCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEE-EEEeecCC
Q 005713 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVV-VVVNKIDR 216 (681)
Q Consensus 150 ~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~i-vviNKiD~ 216 (681)
+.+.+.|||||+...........+..+|.+|+|+.........+...++.+.+.+++++ +|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 56889999999865432222223447899999999887666677778888888888877 89999984
No 260
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.50 E-value=0.011 Score=61.41 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=20.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-..++++|++|+|||||++.|+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCEEEEECCCCCCHHHHHHHhccc
Confidence 357999999999999999999764
No 261
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.44 E-value=0.02 Score=60.84 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
..++++|++|+|||||++.|+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 468999999999999999998754
No 262
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.31 E-value=0.17 Score=55.20 Aligned_cols=113 Identities=18% Similarity=0.167 Sum_probs=61.7
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhc----Cc-c--cccc-ceeeeeeccchhhcccceeEEeeeeEEee---CCeEEE
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQA----KV-F--RDNQ-TVKERIMDSNDLERERGITILSKNTSITY---NDTKIN 155 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~----~~-~--~~~~-~~~~~~~D~~~~E~erGiTi~~~~~~~~~---~~~~i~ 155 (681)
.++.-|+|+|..++|||+|+|.|+... +. . .... ...-.+. ....-..+||.+......+.. .+..+.
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~-~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR-GGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCC-CSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeC-CCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 357788999999999999999776431 10 0 0000 0000000 011223458888776655544 246799
Q ss_pred EEeCCCccchhH-----HHHHHHh--hcceEEEEeeCCCCCchhhHHHHHHHHH
Q 005713 156 IIDTPGHSDFGG-----EVERILN--MVEGVLLVVDSVEGPMPQTRFVLKKALE 202 (681)
Q Consensus 156 iiDTPGh~df~~-----e~~~~l~--~aD~~llVvDa~~g~~~qt~~~l~~~~~ 202 (681)
++||.|..|-.. ....++. .++..| +.....+..+....|....+
T Consensus 144 llDTEG~~d~~~~~~~d~~ifaLa~LLSS~~I--yN~~~~i~~~~L~~L~~~te 195 (457)
T 4ido_A 144 LMDTQGTFDSQSTLRDSATVFALSTMISSIQV--YNLSQNVQEDDLQHLQLFTE 195 (457)
T ss_dssp EEEECCBTCTTCCHHHHHHHHHHHHHHCSEEE--EEEESSCCHHHHHHHHHHHH
T ss_pred EEeccCCCCcccCccccHHHHHHHHHHhhhee--ecccccCCHHHHHHHHHHHH
Confidence 999999755421 1222233 244444 44444566666666655443
No 263
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.14 E-value=0.048 Score=56.50 Aligned_cols=21 Identities=10% Similarity=0.151 Sum_probs=19.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAML 110 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll 110 (681)
..++++|++|+|||||++.|+
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 568999999999999999998
No 264
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=94.05 E-value=0.1 Score=52.27 Aligned_cols=66 Identities=17% Similarity=0.140 Sum_probs=45.4
Q ss_pred CCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHH------cCCEEE-EEEeecCCC
Q 005713 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALE------FGHAVV-VVVNKIDRP 217 (681)
Q Consensus 150 ~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~------~gip~i-vviNKiD~~ 217 (681)
..+.+.|||||+.... ....++..+|.+|+++.+...........++.+.. .+++++ +|+|+.|..
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 5688999999987543 34567788999999999875433333333333332 257764 899999854
No 265
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.99 E-value=0.095 Score=52.66 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=41.1
Q ss_pred CeEEEEEeCCCccchhHHH-HHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHc----CCEE-EEEEeecCC
Q 005713 151 DTKINIIDTPGHSDFGGEV-ERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEF----GHAV-VVVVNKIDR 216 (681)
Q Consensus 151 ~~~i~iiDTPGh~df~~e~-~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~----gip~-ivviNKiD~ 216 (681)
.+.+.||||||........ ......+|.+|+++.+...........++.+... ++++ -+|+|+.+.
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 4789999999864322111 1123579999999997654334444444444432 5664 688999873
No 266
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.96 E-value=0.031 Score=53.25 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
+++|+|+.|+|||||++.|.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987653
No 267
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=93.91 E-value=0.11 Score=50.91 Aligned_cols=65 Identities=22% Similarity=0.144 Sum_probs=50.1
Q ss_pred CeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCE-EEEEEeecCCC
Q 005713 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRP 217 (681)
Q Consensus 151 ~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip-~ivviNKiD~~ 217 (681)
.+.+.|||||+... .....++..+|.+|+|+++.......+...++.+.+.+.+ .-+|+||+|..
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 46899999998644 4567788999999999998765555666777777777765 56889999954
No 268
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.88 E-value=0.028 Score=54.34 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
+.++|+|++|+|||||++.|++.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 56899999999999999999875
No 269
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=93.77 E-value=0.11 Score=52.85 Aligned_cols=65 Identities=20% Similarity=0.257 Sum_probs=51.1
Q ss_pred eEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEE-EEEeecCCC
Q 005713 152 TKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVV-VVVNKIDRP 217 (681)
Q Consensus 152 ~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~i-vviNKiD~~ 217 (681)
+.+.|||||+..... ........+|.+|+|+.+...........++.+...+.+++ +|+|++|..
T Consensus 192 yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 192 YNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp CSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 579999999865432 23345678999999999988777788888888888888876 899999964
No 270
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.77 E-value=0.035 Score=52.61 Aligned_cols=24 Identities=4% Similarity=0.371 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
..++|+|++|+|||||++.|+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999998753
No 271
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.40 E-value=0.3 Score=52.80 Aligned_cols=90 Identities=14% Similarity=0.167 Sum_probs=52.6
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCccchhH
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGG 167 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~df~~ 167 (681)
...-|+++|.+|+||||+..+|....+. .++|.... ..+.....
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~---------~~i~~D~~---------------------------~~~~~~~~ 300 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGY---------VHVNRDTL---------------------------GSWQRCVS 300 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTC---------EECCGGGS---------------------------CSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCc---------EEEccchH---------------------------HHHHHHHH
Confidence 3466899999999999999999765332 11222111 01222222
Q ss_pred HHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecC
Q 005713 168 EVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKID 215 (681)
Q Consensus 168 e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD 215 (681)
.+...+. .+..+|+|+......+-..++..+...+.++.+|.=.++
T Consensus 301 ~~~~~l~--~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~ 346 (416)
T 3zvl_A 301 SCQAALR--QGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCAT 346 (416)
T ss_dssp HHHHHHH--TTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred HHHHHHh--cCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCC
Confidence 3333333 344466898766555555666777777877666554444
No 272
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.33 E-value=0.52 Score=44.29 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=22.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
....|+++|.+|+||||++..|....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999997653
No 273
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.32 E-value=0.053 Score=51.37 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=21.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
.-..|+++|++|+|||||++.|.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3457999999999999999999875
No 274
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=93.10 E-value=0.12 Score=51.77 Aligned_cols=65 Identities=23% Similarity=0.262 Sum_probs=49.6
Q ss_pred CeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCE-EEEEEeecCCC
Q 005713 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRP 217 (681)
Q Consensus 151 ~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip-~ivviNKiD~~ 217 (681)
++.+.|||||+... .....++..+|.+|+|+.+.......+...++.+.+.+.+ .-+|+|++|..
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 57899999998654 5566788999999999987665555666677777776765 55899999853
No 275
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.10 E-value=0.046 Score=52.99 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
-..++|+|+.|+|||||++.|.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468999999999999999998764
No 276
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.05 E-value=0.3 Score=44.24 Aligned_cols=26 Identities=8% Similarity=-0.029 Sum_probs=22.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
...+|.+.|++|+|||+|+.++....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 34679999999999999999997643
No 277
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.02 E-value=0.2 Score=46.53 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=22.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
...++.+.|++|+|||+|+..+...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999875
No 278
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.99 E-value=0.31 Score=44.70 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
-..++++|++|+|||||+..+....
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998753
No 279
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.99 E-value=0.048 Score=51.88 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
+-++|+|++|+|||||++.|+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 348999999999999999998754
No 280
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.98 E-value=0.06 Score=52.03 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=21.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
....|+|+|+.|||||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999875
No 281
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.98 E-value=0.05 Score=52.14 Aligned_cols=24 Identities=38% Similarity=0.404 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
..++|+|++|||||||++.|.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 458999999999999999998763
No 282
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.94 E-value=0.065 Score=51.93 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=23.3
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
..-+-|+|+|++|+|||||+++|+...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 345679999999999999999999764
No 283
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.91 E-value=0.099 Score=50.96 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
...++.|.|++|+|||||+..+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999997653
No 284
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.73 E-value=0.063 Score=52.01 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
.-..|+|+|++|+|||||++.|...
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999765
No 285
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.72 E-value=0.055 Score=53.05 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
-..++|+|++|+|||||++.|++..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3569999999999999999998754
No 286
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.46 E-value=0.076 Score=51.06 Aligned_cols=28 Identities=18% Similarity=0.379 Sum_probs=23.2
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
.....|+|+|.+|+|||||++.|....+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3456799999999999999999987643
No 287
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.38 E-value=0.066 Score=52.73 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
-.-++|+|++|+|||||++.|++..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4568999999999999999998764
No 288
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.38 E-value=0.069 Score=49.79 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
--.++++|+.|+|||||++.|.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3469999999999999999998864
No 289
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.36 E-value=0.31 Score=46.34 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
..++.+.|++|+|||+|+..+...
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999999765
No 290
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.32 E-value=0.93 Score=43.41 Aligned_cols=23 Identities=22% Similarity=-0.034 Sum_probs=20.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLK 111 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~ 111 (681)
-..++|+|++|+|||||+..|+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999987
No 291
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=92.29 E-value=0.095 Score=42.42 Aligned_cols=63 Identities=16% Similarity=0.215 Sum_probs=54.6
Q ss_pred EEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEE
Q 005713 485 EIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAIL 550 (681)
Q Consensus 485 ~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~ 550 (681)
-+..+.||-..+|.|...|.+..+.+.+.+.. ..+.++..+|....-.|...|..+|+|+..+
T Consensus 8 ~~~~l~~dY~~~g~v~~~L~~~~~~I~~~~Y~---~~V~l~v~vp~~~~~~~~~~L~d~t~G~~~~ 70 (76)
T 3lh2_S 8 TEYTLQANWFDITGILWLLGQVDGKIINSDVQ---AFVLLRVALPAAKVAEFSAKLADFSGGSLQL 70 (76)
T ss_dssp EEEEEEECHHHHHHHHHHHHHTTCEEEEEEEE---EEEEEEEEECC-CC-CHHHHHHHHHTTCCCB
T ss_pred eeEEEEEcccCHHHHHHHHHHCCCEEEccccc---CeEEEEEEECHHHHHHHHHHHHHHhCCEEEE
Confidence 45678899999999999999999999999884 3699999999999999999999999998754
No 292
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.19 E-value=0.44 Score=47.60 Aligned_cols=26 Identities=23% Similarity=0.141 Sum_probs=22.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
....|+++|.+|+||||+...|....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45679999999999999999998754
No 293
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.11 E-value=0.092 Score=50.26 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=21.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
-..|+|+|++|||||||++.|....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3569999999999999999998753
No 294
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=92.05 E-value=0.16 Score=50.56 Aligned_cols=64 Identities=8% Similarity=0.123 Sum_probs=48.8
Q ss_pred CeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcC---------CEEEEEEeecCC
Q 005713 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFG---------HAVVVVVNKIDR 216 (681)
Q Consensus 151 ~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~g---------ip~ivviNKiD~ 216 (681)
.+.+.|||||+... .....++..+|.+|+|+++...........+..+...+ ..+.+|+|+.|.
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 68899999998544 46677889999999999987654555556666665544 478899999984
No 295
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.01 E-value=0.33 Score=49.55 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
..+.+.|++|+|||+|+..|....
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 479999999999999999998754
No 296
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=91.96 E-value=0.24 Score=50.80 Aligned_cols=66 Identities=20% Similarity=0.192 Sum_probs=51.6
Q ss_pred eEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCE-EEEEEeecCCCC
Q 005713 152 TKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHA-VVVVVNKIDRPS 218 (681)
Q Consensus 152 ~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip-~ivviNKiD~~~ 218 (681)
+.+.|||||...... ........+|++|+|+.+...........++.+...+.+ +-+|+||+|...
T Consensus 202 yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 202 YDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp CSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred CCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 569999999875442 234466789999999999887777888888888888876 457899999643
No 297
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.92 E-value=0.1 Score=50.54 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=22.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
-.-|+|+|++|+|||||++.|+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4569999999999999999998764
No 298
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=91.91 E-value=0.25 Score=50.87 Aligned_cols=65 Identities=15% Similarity=0.187 Sum_probs=51.3
Q ss_pred eEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEE-EEEeecCCC
Q 005713 152 TKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVV-VVVNKIDRP 217 (681)
Q Consensus 152 ~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~i-vviNKiD~~ 217 (681)
+.+.|||||+..... ........+|.+|+|+.+...........++.+...+.+++ +|+|++|..
T Consensus 214 yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 214 YDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp CSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 579999999875432 23345678999999999888778888888888888887754 789999964
No 299
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.85 E-value=0.079 Score=49.73 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=18.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHH
Q 005713 90 RNIAIIAHVDHGKTTLVDAML 110 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll 110 (681)
--++++|++|||||||++.++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 458999999999999999864
No 300
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.84 E-value=0.088 Score=48.94 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
..|+|+|.+|+|||||.+.|....+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999987644
No 301
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.74 E-value=0.61 Score=46.75 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.3
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
...|+++|.+|+||||+...|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999764
No 302
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.73 E-value=0.058 Score=51.03 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
..|+|+|.+|+|||||++.|+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999875
No 303
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.72 E-value=0.07 Score=53.11 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|||||||++.|.+.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 45999999999999999999764
No 304
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.68 E-value=0.088 Score=50.52 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
|-|+|+|++|+|||||+++|+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 348999999999999999998763
No 305
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.61 E-value=0.12 Score=48.21 Aligned_cols=26 Identities=12% Similarity=0.196 Sum_probs=22.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
-..|+++|.+|+|||||+..|....+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 45799999999999999999976543
No 306
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.58 E-value=0.079 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|+|||||++.|.+.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999764
No 307
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.47 E-value=0.11 Score=49.14 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
.+.++|+|.+|+|||||+++|+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 567999999999999999999875
No 308
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.42 E-value=0.11 Score=48.09 Aligned_cols=25 Identities=20% Similarity=0.041 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
..|+|+|.+|+||||+.+.|....+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999976533
No 309
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.31 E-value=0.77 Score=48.20 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
+++.|.|++|+|||||+..+....
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999998753
No 310
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.28 E-value=0.099 Score=52.22 Aligned_cols=23 Identities=9% Similarity=0.241 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|+|||||++.|.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999875
No 311
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=91.26 E-value=0.38 Score=47.45 Aligned_cols=42 Identities=17% Similarity=0.022 Sum_probs=29.2
Q ss_pred ceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCCCC
Q 005713 177 EGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPS 218 (681)
Q Consensus 177 D~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~~~ 218 (681)
+.-+++||-..-+.....+.+..+...++++|+++-..|-..
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~~ 130 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKG 130 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTTS
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccccC
Confidence 456888896654444455566666667999999998888543
No 312
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.18 E-value=0.13 Score=48.58 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.6
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
.+.++|+|..|+|||||+.+|+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 567999999999999999999864
No 313
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.13 E-value=0.13 Score=47.41 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
..|+|+|.+||||||+.+.| ...+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC
Confidence 46899999999999999999 5433
No 314
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.99 E-value=0.69 Score=47.91 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=22.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
...+|.|.|++|+|||+|+.++....
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 45679999999999999999997653
No 315
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.95 E-value=0.13 Score=48.75 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHHh
Q 005713 91 NIAIIAHVDHGKTTLVDAMLK 111 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~ 111 (681)
.++++|++|+|||||++.|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999976
No 316
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.89 E-value=0.11 Score=50.82 Aligned_cols=23 Identities=26% Similarity=0.115 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|+|||||++.|.+.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999875
No 317
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.87 E-value=0.1 Score=51.94 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|+|||||++.|.+.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999764
No 318
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.85 E-value=0.13 Score=52.11 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=21.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
.--.++|+|++|+|||||++.|++.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh
Confidence 3456999999999999999999874
No 319
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.82 E-value=0.13 Score=49.61 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
.+.|+|+|++|+|||||++.|....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4568999999999999999998764
No 320
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.80 E-value=0.12 Score=53.49 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=23.4
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
-..-..++|+|++|+|||||++.|++..
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3345679999999999999999998753
No 321
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.78 E-value=0.099 Score=52.92 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|+|||||++.|.+.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999764
No 322
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.78 E-value=0.12 Score=52.00 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|+|||||++.|.+.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999874
No 323
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.78 E-value=0.11 Score=51.47 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|+|||||++.|.+.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999764
No 324
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.70 E-value=0.11 Score=51.88 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=21.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
--.++|+|+.|+|||||++.|.+.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999764
No 325
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.67 E-value=0.1 Score=52.64 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|+|||||++.|.+.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999764
No 326
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.67 E-value=0.12 Score=49.59 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhc
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
.++|+|+.|+|||||++.|.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48999999999999999998753
No 327
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.65 E-value=0.1 Score=53.23 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|||||||++.|.+.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999764
No 328
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.63 E-value=0.1 Score=53.04 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|+|||||++.|.+.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 45899999999999999999764
No 329
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=90.62 E-value=0.71 Score=52.28 Aligned_cols=73 Identities=14% Similarity=0.151 Sum_probs=57.8
Q ss_pred EeeecCCCceEEEEEeecccccCCCEEEEccCCCceeeeEEEeEEEeeccceeecceecCCCEEEEe--cc---cccccC
Q 005713 295 NLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVC--GI---DDIQIG 369 (681)
Q Consensus 295 ~~~~d~~~G~v~~grV~sG~lk~gd~v~~~~~~~~~~~~kV~~i~~~~g~~~~~v~~a~aGdiv~i~--gl---~~~~~G 369 (681)
.++..+. |.|+-++|..|+|+.|..|.+ +.+. ..++|.+|. ..+.++++|.+|.-|+|. +. .++..|
T Consensus 472 ~~f~~~~-~~i~g~~v~~G~~~~~~~~~~-~~~~--~~g~i~sl~----~~k~~v~~~~~g~e~gi~~~~~~~~~~~~~~ 543 (594)
T 1g7s_A 472 LVFRQSK-PAIGGVEVLTGVIRQGYPLMN-DDGE--TVGTVESMQ----DKGENLKSASRGQKVAMAIKDAVYGKTIHEG 543 (594)
T ss_dssp EEEECSS-SEEEEEEEEEEEEETTCEEEC-TTSC--EEEEEEEEE----ETTEEESEEETTCCEEEEEETCCBTTTBCTT
T ss_pred eEEcCCC-CeEEEEEEecCEEecCCeEEe-cCCc--EEEEEehhc----ccCccccccCCCCEEEEEEeCcccCCCCCCC
Confidence 4555554 799999999999999999987 4443 457888885 456789999999999994 54 589999
Q ss_pred Ceeecc
Q 005713 370 ETIADK 375 (681)
Q Consensus 370 dtl~~~ 375 (681)
|.|-..
T Consensus 544 d~~~~~ 549 (594)
T 1g7s_A 544 DTLYVD 549 (594)
T ss_dssp CEEEEC
T ss_pred CEEEEE
Confidence 998653
No 330
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=90.61 E-value=0.91 Score=47.97 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.-+.|.|++|+|||||+.+++..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999864
No 331
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.60 E-value=0.11 Score=51.01 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|+|||||++.|.+.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 34899999999999999999764
No 332
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=90.58 E-value=0.58 Score=48.97 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.7
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
....++.|.|++|+|||||+..+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999865
No 333
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.55 E-value=0.11 Score=51.97 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|+|||||++.|.+.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999764
No 334
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.47 E-value=0.16 Score=48.66 Aligned_cols=22 Identities=18% Similarity=0.453 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLK 111 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~ 111 (681)
.+|+|+|..|+||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4699999999999999999977
No 335
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.45 E-value=0.11 Score=51.81 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|+|||||++.|.+.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999764
No 336
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.45 E-value=0.16 Score=48.66 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.1
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
...+|+++|.+|+||||+...|....+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999987543
No 337
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.42 E-value=0.15 Score=49.59 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
..|+|+|++|+||||+++.|....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999997643
No 338
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=90.41 E-value=0.2 Score=48.07 Aligned_cols=26 Identities=23% Similarity=0.107 Sum_probs=22.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
.-..|+|+|.+|+|||||...|....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999997654
No 339
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.36 E-value=0.18 Score=52.50 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=22.4
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
.....|+|+|++|||||||++.|.+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 34567999999999999999999764
No 340
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.32 E-value=0.14 Score=52.08 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|+|||||++.|.+.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999874
No 341
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.32 E-value=0.12 Score=52.18 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|+|||||++.|.+.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 46999999999999999999764
No 342
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.28 E-value=0.16 Score=50.41 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=22.2
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
...|+|+|++|||||||++.|....+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999985433
No 343
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.24 E-value=0.16 Score=48.57 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=22.3
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
...|+|+|.+|+|||||+..|....+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999987643
No 344
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.20 E-value=0.12 Score=52.38 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=20.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
--.++|+|+.|+|||||++.|.+.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 345899999999999999999764
No 345
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=90.19 E-value=0.96 Score=47.55 Aligned_cols=42 Identities=21% Similarity=0.262 Sum_probs=35.4
Q ss_pred cceEEEEeeCCCCCchhhHHHHHHHHHcCCEE-EEEEeecCCC
Q 005713 176 VEGVLLVVDSVEGPMPQTRFVLKKALEFGHAV-VVVVNKIDRP 217 (681)
Q Consensus 176 aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~-ivviNKiD~~ 217 (681)
.+++++|.-+..-....++..+..+.+.|+|+ -+|+|++...
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~ 279 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPE 279 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccc
Confidence 47889998887777788889999999999986 6789999865
No 346
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.09 E-value=0.16 Score=49.35 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|++|+|||||+..|+..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999874
No 347
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.06 E-value=0.18 Score=46.96 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLK 111 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~ 111 (681)
..|++.|.+|+||||++..|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 348
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=90.04 E-value=0.14 Score=48.06 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.6
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-..++++|++|+|||||+.++.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999865
No 349
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.04 E-value=0.13 Score=51.99 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|+|||||++.|.+.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999764
No 350
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=89.99 E-value=1.2 Score=45.56 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=21.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
..+|.|.|++|+|||+|+.++....
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999997653
No 351
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.98 E-value=0.14 Score=51.46 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|+|||||++.|.+.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 35899999999999999999764
No 352
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=89.95 E-value=0.21 Score=47.17 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=22.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
...+|+++|.+|+||||+...|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999775
No 353
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.89 E-value=0.56 Score=48.86 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
..+.|.|++|+|||+|+.++...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 34689999999999999999875
No 354
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.86 E-value=0.14 Score=52.10 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|+|||||++.|.+.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999764
No 355
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.84 E-value=0.16 Score=50.04 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLK 111 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~ 111 (681)
-.++|+|+.|+|||||+..|+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 4589999999999999999873
No 356
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.79 E-value=0.96 Score=50.21 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=22.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
.+.+.+.|++|+|||||+.++....
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4789999999999999999998765
No 357
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.76 E-value=0.2 Score=47.09 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
..|+|.|.+|+||||+++.|....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999997753
No 358
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=89.76 E-value=0.18 Score=47.86 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
.|+|+|..|+||||++..|....+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999987543
No 359
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=89.76 E-value=0.65 Score=44.92 Aligned_cols=68 Identities=15% Similarity=0.125 Sum_probs=43.4
Q ss_pred CCeEEEEEeCCCccch--h--HHHHHHHhhc-ceEEEEeeCCCCCchhhHHHHHHHHHcCCEEE-EEEeecCCC
Q 005713 150 NDTKINIIDTPGHSDF--G--GEVERILNMV-EGVLLVVDSVEGPMPQTRFVLKKALEFGHAVV-VVVNKIDRP 217 (681)
Q Consensus 150 ~~~~i~iiDTPGh~df--~--~e~~~~l~~a-D~~llVvDa~~g~~~qt~~~l~~~~~~gip~i-vviNKiD~~ 217 (681)
+++.+.||||||.... . .......... +.+|+|+++..+...++...++.+...+++++ +|+|++|..
T Consensus 107 ~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~ 180 (224)
T 1byi_A 107 QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP 180 (224)
T ss_dssp TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSC
T ss_pred HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCc
Confidence 3578999999975321 0 0112222222 35888888866555666667777777788754 789999853
No 360
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.75 E-value=0.18 Score=47.30 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
.++|+++|.+|+||||+...|....+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999976543
No 361
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.73 E-value=0.14 Score=52.02 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|+|||||++.|.+.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 45899999999999999999764
No 362
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.73 E-value=0.15 Score=52.19 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|+|||||++.|.+.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 45899999999999999999764
No 363
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=89.72 E-value=1.7 Score=43.17 Aligned_cols=25 Identities=16% Similarity=0.217 Sum_probs=22.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
..+|.|.|++|+|||+|+.++....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3679999999999999999998754
No 364
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=89.65 E-value=0.21 Score=46.46 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=21.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
..|.++|.+|+||||+.+.|....+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4689999999999999999987643
No 365
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.63 E-value=0.11 Score=51.00 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=16.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHH-hh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAML-KQ 112 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll-~~ 112 (681)
-..++|+|++|+|||||++.|. ..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3569999999999999999998 64
No 366
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.62 E-value=0.14 Score=51.52 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|+|||||++.|.+.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999764
No 367
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.60 E-value=0.22 Score=48.69 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=22.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
...|+|+|.+||||||++..|....+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999986543
No 368
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog; shwachman-bodian-diamond syndrome protein; 1.75A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=89.59 E-value=0.62 Score=46.42 Aligned_cols=66 Identities=12% Similarity=0.172 Sum_probs=53.6
Q ss_pred EEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEe
Q 005713 485 EIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNT 552 (681)
Q Consensus 485 ~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~ 552 (681)
+++.|.+|.+|.|.+.+.|... |.+...+.. ++|...+.+.+|..-.-.|...+.+.|+|+|.+..
T Consensus 185 m~l~v~ip~~~~~~~~~~l~~~-~~v~~ee~~-~dgs~~~v~~i~pg~~~~~~~~v~~~tkG~~~~~v 250 (252)
T 2wbm_A 185 VRVAIKIPGEMAGSAYGVISNF-GKITNEEWQ-NDGSWIAVVEIPGGLQDSFYQKLSELTGGNVETRL 250 (252)
T ss_dssp EEEEEEECGGGHHHHHHHHHHH-CEEEEEEEC-TTSCEEEEEEEEGGGHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEEEEcHHHHHHHHHHHHhh-Ceeeeeccc-CCCcEEEEEEECCccHHHHHHHHHHhcCCeEEEEE
Confidence 6788999999999999999654 788777654 33556788999987666788899999999997653
No 369
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=89.57 E-value=0.24 Score=47.59 Aligned_cols=26 Identities=35% Similarity=0.360 Sum_probs=22.5
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
.....|+|+|.+|+|||||++.|...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999999875
No 370
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=89.55 E-value=0.33 Score=47.70 Aligned_cols=65 Identities=17% Similarity=0.206 Sum_probs=49.9
Q ss_pred CeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCC---EEEEEEeecCCC
Q 005713 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGH---AVVVVVNKIDRP 217 (681)
Q Consensus 151 ~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gi---p~ivviNKiD~~ 217 (681)
.+.+.|||||+.... ....++..+|.+|+++.........+...++.+...+. .+.+|+|++|..
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 468999999986533 45667899999999999876555666777777777663 478899999854
No 371
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=89.49 E-value=0.19 Score=48.23 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLK 111 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~ 111 (681)
+.|+|+|..||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999965
No 372
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=89.42 E-value=0.14 Score=52.27 Aligned_cols=65 Identities=17% Similarity=0.123 Sum_probs=43.8
Q ss_pred CeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCC----CCchhhHHH-------------H---HHHHH----cC-C
Q 005713 151 DTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVE----GPMPQTRFV-------------L---KKALE----FG-H 205 (681)
Q Consensus 151 ~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~----g~~~qt~~~-------------l---~~~~~----~g-i 205 (681)
.+.+.|||||+.. ...+..++..+|.+|+++.... +.. .+... + +.+.. .+ .
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 179 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDSFVDFDMLG-TVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAM 179 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESSHHHHTTTE-EECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCC
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCCccHHHHHH-HHHHHhhhccccchhhhhhhcchhhhhhccCCccc
Confidence 4679999999875 4567788999999999998653 111 11111 2 33332 25 7
Q ss_pred EEEEEEeecCCCC
Q 005713 206 AVVVVVNKIDRPS 218 (681)
Q Consensus 206 p~ivviNKiD~~~ 218 (681)
++.+|+|++|...
T Consensus 180 ~~~vV~N~~~~~~ 192 (286)
T 2xj4_A 180 DWVVLRNRLATTE 192 (286)
T ss_dssp EEEEEEECCTTCC
T ss_pred cEEEEEeeecCCC
Confidence 7889999999643
No 373
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.36 E-value=0.23 Score=51.76 Aligned_cols=26 Identities=23% Similarity=0.119 Sum_probs=22.1
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
....-|+|+|++|||||||++.|...
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999998664
No 374
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.30 E-value=0.23 Score=49.36 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=22.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
.-..|+|+|+.|+|||||++.|....+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345699999999999999999977543
No 375
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.29 E-value=0.24 Score=50.94 Aligned_cols=26 Identities=12% Similarity=-0.061 Sum_probs=22.3
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
.....|+|+|++|+|||||++.|...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999998764
No 376
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=89.24 E-value=0.26 Score=46.83 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
+...|+|+|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4578999999999999999999875
No 377
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=89.23 E-value=0.27 Score=46.91 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=23.6
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
...+.|+|.|.+|+||||+...|....+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3457899999999999999999986544
No 378
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.05 E-value=0.19 Score=52.21 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
++..++|+|..|+|||||++.|++..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46778999999999999999999753
No 379
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.04 E-value=0.18 Score=53.54 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=22.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
-.+++|+|++|+|||||++.|++..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3579999999999999999998753
No 380
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=88.98 E-value=0.26 Score=46.41 Aligned_cols=25 Identities=32% Similarity=0.324 Sum_probs=21.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
...|+++|.+|+||||+...|....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999997654
No 381
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.93 E-value=0.13 Score=53.42 Aligned_cols=24 Identities=17% Similarity=0.392 Sum_probs=21.2
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
--.++|+|++|+|||||++.|++.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 456999999999999999999764
No 382
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.86 E-value=0.19 Score=50.94 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
-.++|+|+.|+|||||++.|.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999997653
No 383
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.85 E-value=0.25 Score=47.78 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=21.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
+|+|+|.+|+||||+...|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999976543
No 384
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=88.84 E-value=0.19 Score=53.19 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=22.2
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
..+++|+|+.|+|||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998764
No 385
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=88.80 E-value=0.3 Score=46.93 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=21.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
....|+|+|.+|+|||||++.|...
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998763
No 386
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.80 E-value=0.24 Score=46.44 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
-.+|+|+.|+|||||+++|....+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999987543
No 387
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=88.79 E-value=0.25 Score=46.20 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=22.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
..++|+++|.+|+||||+...|....+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 356799999999999999999976543
No 388
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=88.79 E-value=0.19 Score=51.61 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|+|||||++.|.+.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 46899999999999999999764
No 389
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=88.77 E-value=0.3 Score=45.77 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=22.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
.+.|+|.|.+|+||||+...|....+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999976533
No 390
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.76 E-value=0.23 Score=47.96 Aligned_cols=24 Identities=21% Similarity=0.397 Sum_probs=20.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
+|+|+|.+||||||++..|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999976543
No 391
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.74 E-value=0.21 Score=52.94 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
-.++|+|++|||||||++.|.+..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 458999999999999999998753
No 392
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=88.67 E-value=0.25 Score=46.31 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
..|+|.|.+|+||||++..|....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 569999999999999999997643
No 393
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.57 E-value=0.21 Score=53.00 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|||||||++.|.+.
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHhcC
Confidence 45899999999999999999764
No 394
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=88.55 E-value=0.23 Score=52.60 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.|+|+|+.|||||||++.|++.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37999999999999999999875
No 395
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=88.54 E-value=0.29 Score=50.57 Aligned_cols=26 Identities=23% Similarity=0.132 Sum_probs=22.3
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
.....|+|+|+.|+|||||++.|...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34467999999999999999999774
No 396
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.54 E-value=0.3 Score=46.84 Aligned_cols=25 Identities=16% Similarity=0.088 Sum_probs=21.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
+...|+|.|.+|+||||+++.|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999764
No 397
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.52 E-value=0.26 Score=46.29 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=21.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
-..|+++|.+||||||+...|....
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999997643
No 398
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=88.48 E-value=0.19 Score=51.87 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
..++++|++|+|||||++.|....
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 468999999999999999997653
No 399
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.41 E-value=0.23 Score=46.31 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=21.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
.+|+|+|.+|+||||+...|....+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3699999999999999999976544
No 400
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=88.39 E-value=0.31 Score=48.79 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.2
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
...|+|+|+.|||||||++.|....+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999985533
No 401
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=88.35 E-value=0.27 Score=46.18 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=22.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
...|+|+|.+||||||+...|....+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999976543
No 402
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.26 E-value=0.32 Score=45.90 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=22.3
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
...|+|+|.+|+||||+...|....+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999976543
No 403
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.09 E-value=1.8 Score=45.06 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
.+++|+|+.|+|||||++.|++..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998753
No 404
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.04 E-value=0.26 Score=52.57 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-..|+|+|++|+|||||++.|++.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457999999999999999999875
No 405
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=88.03 E-value=0.24 Score=52.45 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|+|||||++.|.+.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 45899999999999999999865
No 406
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=88.02 E-value=1.7 Score=44.20 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=23.1
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
.....+|.+.|++|+|||+|+.++....
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3456689999999999999999887653
No 407
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=87.88 E-value=0.25 Score=52.44 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|||||||++.|.+.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHCC
Confidence 45899999999999999999875
No 408
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=87.84 E-value=1.4 Score=46.55 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=20.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-..+.|.|.+|+|||||+..|+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998764
No 409
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=87.82 E-value=1.1 Score=44.95 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=23.0
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
....++.+.|++|+|||+|+.++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45678999999999999999999775
No 410
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=87.79 E-value=0.25 Score=52.38 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++++|+.|+|||||++.|.+.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 45899999999999999999875
No 411
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=87.73 E-value=0.26 Score=52.67 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
-.++|+|++|||||||++.|.+..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 358999999999999999998753
No 412
>1t95_A Hypothetical protein AF0491; shwachman-bodian-diamond syndrome protein orthologue, unknown function; 1.90A {Archaeoglobus fulgidus} SCOP: a.5.8.1 d.235.1.2 d.58.11.3 PDB: 1p9q_C
Probab=87.67 E-value=0.69 Score=45.76 Aligned_cols=66 Identities=18% Similarity=0.262 Sum_probs=53.3
Q ss_pred EEEEEEecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEEEe
Q 005713 485 EIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNT 552 (681)
Q Consensus 485 ~~~~i~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~~~ 552 (681)
+++.|.+|.+|.|.+++.|.. -|.+...+.. ++|...+.+.+|..-.-.|...+...|+|.|.+..
T Consensus 170 m~~~v~vp~~~~~~~~~~l~~-~~~v~~ee~~-~dgs~~~v~~Ippg~~~~~~~~l~~~tkG~~~~~v 235 (240)
T 1t95_A 170 MEIAIKIPPEHTGRAISALYN-FGGVTREEWQ-RDGSWICVMRIPSGMYGDLMDLLGKVAKGEALTKV 235 (240)
T ss_dssp EEEEEEECGGGHHHHHHHHHH-HCCEEEEEEC-TTSCEEEEEEEEGGGHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEEEcHHHHHHHHHHHHh-hCeeeeeccc-CCCcEEEEEEECCccHHHHHHHHHHhcCCeEEEEE
Confidence 678899999999999999954 4777777764 34556788999987656788889999999998764
No 413
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=87.61 E-value=0.37 Score=45.97 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=22.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
....|+|+|.+|+||||+...|....+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446799999999999999999976543
No 414
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=87.54 E-value=0.35 Score=46.16 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
..|+|.|.+|+||||+++.|....+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999977543
No 415
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=87.53 E-value=0.26 Score=52.47 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|+|||||++.|.+.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCcHHHHHHHHHHcC
Confidence 35899999999999999999865
No 416
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=87.51 E-value=0.27 Score=52.39 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|||||||++.|.+.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 45899999999999999999875
No 417
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=87.49 E-value=0.39 Score=48.74 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=21.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
.+.++++|++|+|||||+++|.+..
T Consensus 44 ~~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHc
Confidence 3559999999999999999998753
No 418
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=87.46 E-value=0.17 Score=48.62 Aligned_cols=23 Identities=35% Similarity=0.270 Sum_probs=20.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhc
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
-|+|.|..|+|||||++.|....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 48999999999999999997653
No 419
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=87.40 E-value=0.39 Score=45.68 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=21.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
...|+|.|..|+||||+++.|....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999997753
No 420
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.38 E-value=0.35 Score=45.78 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.3
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
...|+|+|.+|+||||+...|....+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999987543
No 421
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=87.31 E-value=0.46 Score=47.20 Aligned_cols=27 Identities=15% Similarity=-0.001 Sum_probs=23.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
...+|+|+|.+||||||++..|....+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999986543
No 422
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=87.19 E-value=1.3 Score=45.53 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=21.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
..+|.|.|++|+|||+|+.++....
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEECCCCchHHHHHHHHHHhC
Confidence 4679999999999999999997753
No 423
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.19 E-value=0.25 Score=55.01 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.6
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
-.+++|+|++|||||||+++|++..
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3469999999999999999998653
No 424
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=87.12 E-value=2.1 Score=47.55 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=27.4
Q ss_pred cceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecC
Q 005713 176 VEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKID 215 (681)
Q Consensus 176 aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD 215 (681)
..+-.+|+|++.+....-..+...+.+.+.+++++--.+|
T Consensus 117 ~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~ 156 (520)
T 2axn_A 117 EGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCD 156 (520)
T ss_dssp SCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECC
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCC
Confidence 3567889999887666655666677777887666544443
No 425
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=87.11 E-value=0.22 Score=52.90 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=28.1
Q ss_pred CCeEEEEEeCCCccchhHHHHHHHhhcceEEEEeeCCC
Q 005713 150 NDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVE 187 (681)
Q Consensus 150 ~~~~i~iiDTPGh~df~~e~~~~l~~aD~~llVvDa~~ 187 (681)
..+.+.|||||.. ....+..++..+|.+|+|+.+..
T Consensus 258 ~~yD~VIID~p~~--~~~~~~~~l~~aD~vivv~~~~~ 293 (373)
T 3fkq_A 258 DNYDEIIVDLPFS--LEIEKLKLLSKAWRIIVVNDGSQ 293 (373)
T ss_dssp SCCSEEEEECCCC--CCHHHHHHHTTCSEEEEEECCCH
T ss_pred CCCCEEEEeCCCC--CCHHHHHHHHHCCEEEEEecCCc
Confidence 4678999999943 33466778999999999988654
No 426
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=87.10 E-value=0.37 Score=46.75 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=21.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
..+|+++|.+|+||||+...|....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999997653
No 427
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=87.07 E-value=1.8 Score=40.89 Aligned_cols=40 Identities=20% Similarity=0.126 Sum_probs=27.2
Q ss_pred ceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCC
Q 005713 177 EGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDR 216 (681)
Q Consensus 177 D~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~ 216 (681)
+.-++++|=..-+.+.....+..+...++++++.....|-
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~~Gl~~~f 115 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLTH 115 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEESBCT
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHCCCCEEEEeecccc
Confidence 4568888955544344555666555669999998887773
No 428
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=87.05 E-value=0.35 Score=46.98 Aligned_cols=26 Identities=15% Similarity=0.135 Sum_probs=22.3
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
...|+|+|.+|+||||+...|....+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999986543
No 429
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=87.03 E-value=0.4 Score=45.88 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=21.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
...|+|.|.+|+||||+++.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999764
No 430
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=86.95 E-value=1.1 Score=40.35 Aligned_cols=24 Identities=8% Similarity=0.040 Sum_probs=20.5
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
..+|.+.|++|+|||+|+.++...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 467999999999999999988543
No 431
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=86.89 E-value=3.1 Score=43.15 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHhh
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
.+.|.|++|+|||||+-+++..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999888754
No 432
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=86.79 E-value=0.41 Score=47.69 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=22.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
....|+|.|.+||||||+...|....+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 456899999999999999999977543
No 433
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=86.77 E-value=1 Score=47.43 Aligned_cols=24 Identities=29% Similarity=0.230 Sum_probs=20.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-..+.|.|++|+|||||+.+++..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998764
No 434
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.77 E-value=3.2 Score=42.99 Aligned_cols=24 Identities=21% Similarity=0.301 Sum_probs=20.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
..++.+.|++|+|||||+..|.+.
T Consensus 36 ~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 36 LPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 344999999999999999999874
No 435
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=86.70 E-value=0.24 Score=52.36 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++++|+.|+|||||++.|.+.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCccHHHHHHHHHcC
Confidence 45899999999999999999865
No 436
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=86.64 E-value=0.39 Score=49.14 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=22.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
....|+++|.+|+|||||+..|....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999998753
No 437
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=86.64 E-value=0.33 Score=52.05 Aligned_cols=23 Identities=26% Similarity=0.598 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|++|+|||||++.|.+.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 45899999999999999999864
No 438
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=86.63 E-value=0.38 Score=44.20 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
+|+|.|.+||||||+...|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999977533
No 439
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=86.59 E-value=0.32 Score=45.38 Aligned_cols=26 Identities=19% Similarity=0.096 Sum_probs=18.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
...|++.|.+||||||+...|....+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999976543
No 440
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=86.55 E-value=0.39 Score=44.32 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=22.0
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
..-+|+|.|..||||||+...|....+
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999976543
No 441
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=86.44 E-value=0.4 Score=46.34 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhc
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
+|+|.|.+|+||||++..|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997653
No 442
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=86.37 E-value=0.39 Score=48.12 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
..|+|+|.+|+|||||...|....+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3589999999999999999987543
No 443
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=86.36 E-value=0.36 Score=52.22 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=21.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
--.|+|+|+.|+|||||++.|+...
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhc
Confidence 3468999999999999999998753
No 444
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=86.34 E-value=0.41 Score=44.94 Aligned_cols=22 Identities=27% Similarity=0.194 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHhh
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
.|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 445
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=86.34 E-value=0.36 Score=44.60 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
+.|+|.|.+|+||||+...|....+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999976533
No 446
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=86.23 E-value=0.34 Score=45.40 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
..|+|+|.+|+||||+...|....+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3599999999999999999977544
No 447
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=86.13 E-value=0.39 Score=46.44 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
..++|+|++|+|||||+..|+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999854
No 448
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=86.12 E-value=1.2 Score=43.35 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=19.5
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
.-+.|.|.+|+|||+|+-.++..
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 35789999999999999887653
No 449
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=86.00 E-value=0.45 Score=47.22 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.8
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
.+.++++|++|+|||||++++.+..
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3459999999999999999998754
No 450
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=85.90 E-value=0.41 Score=45.15 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHHhh
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-|++.|..|+||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999765
No 451
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=85.87 E-value=0.44 Score=43.64 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhh
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.+|+|+.|+|||||+++|...
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999764
No 452
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=85.62 E-value=0.48 Score=44.26 Aligned_cols=24 Identities=21% Similarity=0.098 Sum_probs=21.0
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-..|+++|..|+||||+.+.|...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999764
No 453
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=85.54 E-value=0.23 Score=52.50 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|+|||||++.|.+.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 45899999999999999999865
No 454
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=85.54 E-value=0.95 Score=48.01 Aligned_cols=24 Identities=38% Similarity=0.288 Sum_probs=20.6
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-..+.|.|.+|+|||||+-.+...
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Confidence 346888999999999999998764
No 455
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=85.50 E-value=0.49 Score=45.75 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.6
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLK 111 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~ 111 (681)
...|+|.|..||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 456
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=85.36 E-value=0.36 Score=47.43 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
.-..|+|.|..|+|||||++.|...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3467999999999999999998765
No 457
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=85.28 E-value=0.63 Score=51.09 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=23.1
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
....++.++|++|+|||+|+..|....
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999998753
No 458
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.26 E-value=4.8 Score=43.60 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=24.6
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
....+-|.+.|++|+|||+|+.++....+
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 34568899999999999999999987643
No 459
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=85.15 E-value=0.59 Score=45.81 Aligned_cols=27 Identities=15% Similarity=0.283 Sum_probs=22.9
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
+.+.|.|+|++||||+|.+..|....+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 456688999999999999999987654
No 460
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=85.12 E-value=0.44 Score=52.26 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-..++|+|+.|+|||||++.|++.
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 356999999999999999999875
No 461
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=85.05 E-value=0.5 Score=49.79 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=22.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
+--.++|+|+.|+|||||++.|.+..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34569999999999999999998864
No 462
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=84.93 E-value=0.58 Score=45.95 Aligned_cols=26 Identities=15% Similarity=0.104 Sum_probs=22.4
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
...+|+++|.+|+||||+...|....
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999997653
No 463
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=84.75 E-value=0.45 Score=47.74 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.2
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
-.+|+|+|.+|+||||+.+.|....+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35799999999999999999977443
No 464
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=84.70 E-value=3.3 Score=45.03 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=22.8
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
...++.+.|++|+|||||+..+....
T Consensus 49 ~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 49 HLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 34789999999999999999998754
No 465
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=84.63 E-value=0.47 Score=43.87 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=22.2
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
...++.|.|++|+|||+|+..+...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999765
No 466
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=84.62 E-value=0.53 Score=45.68 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=21.3
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
+|.++|++||||+|....|....+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 588999999999999999987654
No 467
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=84.50 E-value=1.6 Score=51.58 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=23.0
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
....+++++|++|+|||||+..|....
T Consensus 189 ~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 189 RTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999998753
No 468
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=84.19 E-value=0.6 Score=44.42 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.7
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
.+|.+.|++|+|||+|+.++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998753
No 469
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=84.16 E-value=0.58 Score=47.26 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.7
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
.+.|+++|++|+|||||+.++....
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCcChHHHHHHHHHHHc
Confidence 3459999999999999999998754
No 470
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=84.14 E-value=0.63 Score=47.35 Aligned_cols=24 Identities=8% Similarity=0.253 Sum_probs=21.3
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHh
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLK 111 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~ 111 (681)
....|+|.|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999973
No 471
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=84.09 E-value=0.55 Score=47.87 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=20.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
---++|+|++|+|||||+..|...
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 345899999999999999998865
No 472
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=84.07 E-value=0.61 Score=46.27 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=22.3
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
...|+|.|++|+||||+.+.|....+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999976543
No 473
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=84.05 E-value=0.51 Score=51.95 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++|+|+.|+|||||++.|.+.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 56899999999999999999864
No 474
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=83.99 E-value=2.6 Score=53.99 Aligned_cols=27 Identities=30% Similarity=0.246 Sum_probs=23.4
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
.+-++|.+.|++|+|||+|+-++....
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999997653
No 475
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=83.91 E-value=2.4 Score=40.50 Aligned_cols=39 Identities=18% Similarity=0.142 Sum_probs=25.4
Q ss_pred eEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecCC
Q 005713 178 GVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDR 216 (681)
Q Consensus 178 ~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD~ 216 (681)
.-+++||=..-+.+...+.++.+...++++|+.+-+.|=
T Consensus 82 ~dvViIDEaqfl~~~~v~~l~~l~~~~~~Vi~~Gl~~df 120 (191)
T 1xx6_A 82 TEVIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDMDF 120 (191)
T ss_dssp CSEEEECSGGGSCTHHHHHHHHHHHTTCEEEEEECSBCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEeccccc
Confidence 447778843334344456666656668999988877774
No 476
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=83.89 E-value=0.6 Score=45.57 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=20.5
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhc
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
.|+|.|.+|+||||++..|....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997653
No 477
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=83.83 E-value=0.68 Score=45.53 Aligned_cols=29 Identities=24% Similarity=0.270 Sum_probs=23.5
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
+.....|+|+|..|+||||+...|....+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34556899999999999999999986543
No 478
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=83.82 E-value=0.57 Score=48.87 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=22.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
...++++|++|+|||||++.+.+..
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4569999999999999999998764
No 479
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=83.81 E-value=0.65 Score=45.03 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.6
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
.+|+++|.+|+||||+...|....+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999976543
No 480
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.81 E-value=5.5 Score=43.01 Aligned_cols=63 Identities=19% Similarity=0.232 Sum_probs=37.6
Q ss_pred cccccchhHHHHHHhhcccCCCchhhhHHHHhhhccCCCccEEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 50 LKFRHCNTATQRHRRIQCSVSPPAETAAEKKSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
..+.+..++......+.......-..... -........+-|.+.|++|+|||+|+.++....+
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~--~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADL--YEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHH--HHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHH--HHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35666666666555554322211111111 1112234567899999999999999999987644
No 481
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=83.66 E-value=0.7 Score=44.30 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=22.7
Q ss_pred CCccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 87 SDIRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 87 ~~i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
.....|+++|..||||||+.+.|...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999999999999765
No 482
>2cve_A Hypothetical protein TTHA1053; COG1739, UPF0029, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: TLA; 1.60A {Thermus thermophilus} SCOP: d.14.1.11 d.58.11.2
Probab=83.61 E-value=1.8 Score=41.28 Aligned_cols=116 Identities=23% Similarity=0.203 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhccceEEEEECCCCCceEEecccch--hhh-hHHhhhhhcceEEEEcCCeeEEEeeCCeecCcEEEEEE
Q 005713 413 RNLRDRLYRELERNLAMRVADGETADTFIVSGRGTL--HIT-ILIENMRREGYEFMVGPPKVINKKVNDKLLEPYEIATV 489 (681)
Q Consensus 413 ~~l~~~L~~e~~~d~~l~v~~~~~~~~~~v~g~Gel--hl~-il~e~lrreg~e~~~~~P~Vi~~~~~g~llEP~~~~~i 489 (681)
..|.+.|...-..|+.+-|.+= -+++. .|-|-| |.+ ...+-|+..++ ....|...+.+
T Consensus 72 ~piL~~L~~~~l~nv~vVVtRy--fGGi~-LG~ggLvraY~~~a~~al~~~~~----------------~~~~~~~~~~~ 132 (191)
T 2cve_A 72 RPILHAIEAQGLDRVAVLVVRY--FGGVK-LGAGGLVRAYGGVAAEALRRAPK----------------VPLVERVGLAF 132 (191)
T ss_dssp HHHHHHHHHTTBCSEEEEEEEE--CCSSC-CHHHHHHHHHHHHHHHHHHHSCE----------------EECCCEEEEEE
T ss_pred HHHHHHHHHcCCCcEEEEEEEE--eCCcc-cCcchHHHHHHHHHHHHHHhCCc----------------EEEeeeeEEEE
Confidence 5566677776667777766542 12333 233322 211 22223333333 13568899999
Q ss_pred EecCCChhhHHHHHhccCeeeeceeecCCCCeEEEEEEeechhhcchHHHHhhcCcceEEE
Q 005713 490 EVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAIL 550 (681)
Q Consensus 490 ~vp~~~~G~v~~~l~~RrG~i~~~~~~~~~~~~~i~~~vP~~~l~gy~~~l~s~T~G~g~~ 550 (681)
.+|-..+|.|...|.+.. ++.+.+.. +.| +.++..+|....-.|...|..+|+|+..+
T Consensus 133 ~~~Y~~~~~v~~~l~~~~-~i~~~~y~-~~g-V~~~~~v~~~~~~~~~~~l~~~t~G~~~~ 190 (191)
T 2cve_A 133 LVPFAEVGRVYALLEARA-LKAEETYT-PEG-VRFALLLPKPEREGFLRALLDATRGQVAL 190 (191)
T ss_dssp EECGGGHHHHHHHHHHTT-CCEEEEEE-TTE-EEEEEEEEHHHHHHHHHHHHHHTTTCCEE
T ss_pred EEchhhHHHHHHHHHHcC-ceeccEEc-CCe-EEEEEEECHHHHHHHHHHHHHHhCCeEEe
Confidence 999999999999999988 99888874 222 89999999999999999999999998754
No 483
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=83.51 E-value=1.2 Score=50.27 Aligned_cols=130 Identities=12% Similarity=0.050 Sum_probs=0.0
Q ss_pred cCCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEe----------------
Q 005713 85 RRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSIT---------------- 148 (681)
Q Consensus 85 ~~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~---------------- 148 (681)
.....+.+.+.|..|+||||+.-.|...........-.-+.=. ......--|.........+.
T Consensus 4 ~~~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~-~~~l~~~l~~~~~~~~~~v~~~~~l~~~~~d~~~~~ 82 (589)
T 1ihu_A 4 LQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP-ASNVGQVFSQTIGNTIQAIASVPGLSALEIDPQAAA 82 (589)
T ss_dssp GSSCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT-TCCHHHHTTSCCCSSCEECTTSTTEEEEECCHHHHH
T ss_pred CCCCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC-CcCHHHHhCCcccCCCceeccchhhhhccCCHHHHH
Q ss_pred --------------------------------------------------eCCeEEEEEeCC------------------
Q 005713 149 --------------------------------------------------YNDTKINIIDTP------------------ 160 (681)
Q Consensus 149 --------------------------------------------------~~~~~i~iiDTP------------------ 160 (681)
...+.+.|+|||
T Consensus 83 ~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l~~~yD~VIiDt~P~~~~lrll~lP~~~~~~ 162 (589)
T 1ihu_A 83 QQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSF 162 (589)
T ss_dssp HHHHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHHHHCSEEEESSCCCHHHHHHHHCGGGGTCC
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhhcccCCEEEECCCCchhHHHHHHhHHHHHHH
Q ss_pred ---------------CccchhHHHHHHHh-hcc----eEEEEeeCCCCCchhhHHHHHHHHHcCCEEE-EEEeecC
Q 005713 161 ---------------GHSDFGGEVERILN-MVE----GVLLVVDSVEGPMPQTRFVLKKALEFGHAVV-VVVNKID 215 (681)
Q Consensus 161 ---------------Gh~df~~e~~~~l~-~aD----~~llVvDa~~g~~~qt~~~l~~~~~~gip~i-vviNKiD 215 (681)
|..++......... .+| .+++|+.+.......+...++.+...|+++. +|+|+++
T Consensus 163 l~~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~ 238 (589)
T 1ihu_A 163 IDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVL 238 (589)
T ss_dssp C------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEEC
T ss_pred HHHhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCc
No 484
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=83.49 E-value=3.4 Score=42.68 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.1
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-..+.|.|++|+|||||+..+...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHH
Confidence 346899999999999999999875
No 485
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=83.47 E-value=0.73 Score=45.73 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.9
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
.+.|.+.|++|+|||||+.++....
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4679999999999999999997653
No 486
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=83.46 E-value=0.57 Score=49.66 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHHhh
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.+|+|+.|+|||||++++...
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999854
No 487
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=83.39 E-value=0.63 Score=50.64 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.5
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
+--.++|+|+.|+|||||++.|.+..
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34569999999999999999998864
No 488
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=83.37 E-value=4.4 Score=41.95 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=24.3
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
.....++.|.|++|+|||++++.++...
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3467889999999999999999998764
No 489
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=83.34 E-value=6.1 Score=39.38 Aligned_cols=65 Identities=12% Similarity=0.191 Sum_probs=43.5
Q ss_pred CeEEEEEeCCCcc-----ch-hHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEE-EEEEeecC
Q 005713 151 DTKINIIDTPGHS-----DF-GGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAV-VVVVNKID 215 (681)
Q Consensus 151 ~~~i~iiDTPGh~-----df-~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~-ivviNKiD 215 (681)
++.+.|||.||-- +. .....-+.....-+|||+|+..+...++...+..+...++++ =+|+||+.
T Consensus 126 ~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 126 PGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWP 197 (251)
T ss_dssp TTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred cCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 4679999999732 11 111222223345699999998877777777777777778775 46789985
No 490
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=83.25 E-value=0.87 Score=43.83 Aligned_cols=24 Identities=25% Similarity=0.166 Sum_probs=21.2
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
...|+++|.+|+||||++..|...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998764
No 491
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=83.14 E-value=0.53 Score=53.19 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=21.2
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
--.++|+|+.|+|||||++.|++.
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhhc
Confidence 356999999999999999999764
No 492
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=83.12 E-value=0.64 Score=45.38 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
..++|+|++|+|||||+..|+..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999874
No 493
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=82.92 E-value=0.57 Score=52.93 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=21.4
Q ss_pred ccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 89 IRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 89 i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
--.++|+|+.|+|||||++.|++.
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999999875
No 494
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=82.68 E-value=1.4 Score=48.72 Aligned_cols=24 Identities=17% Similarity=0.009 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhhc
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQA 113 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~~ 113 (681)
.-+.|.|.+|+|||||+-.++...
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHH
T ss_pred eEEEEeecCCCCchHHHHHHHHHH
Confidence 347899999999999999988653
No 495
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=82.65 E-value=0.64 Score=52.03 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCcHHHHHHHHHhh
Q 005713 90 RNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 90 ~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
-.++++|+.|+|||||++.|.+.
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999874
No 496
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=82.26 E-value=3.9 Score=42.67 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=32.9
Q ss_pred ceEEEEeeCCCCCchhhHHHHHHHHHcCCEE-EEEEeecCC
Q 005713 177 EGVLLVVDSVEGPMPQTRFVLKKALEFGHAV-VVVVNKIDR 216 (681)
Q Consensus 177 D~~llVvDa~~g~~~qt~~~l~~~~~~gip~-ivviNKiD~ 216 (681)
+.+++|..+..-....+++.+..+...|+|+ -+|+|++.-
T Consensus 223 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~ 263 (334)
T 3iqw_A 223 TTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLF 263 (334)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred eeEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcC
Confidence 4788888877666778889999999999985 678999874
No 497
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=82.23 E-value=0.76 Score=43.67 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=21.1
Q ss_pred EEEEEeCCCCcHHHHHHHHHhhcC
Q 005713 91 NIAIIAHVDHGKTTLVDAMLKQAK 114 (681)
Q Consensus 91 nV~IiG~~~~GKTTLi~~Ll~~~~ 114 (681)
.|+|.|.+|+||||+...|....+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 699999999999999999977543
No 498
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=82.06 E-value=4.1 Score=42.74 Aligned_cols=42 Identities=17% Similarity=0.159 Sum_probs=34.0
Q ss_pred ceEEEEeeCCCCCchhhHHHHHHHHHcCCEE-EEEEeecCCCC
Q 005713 177 EGVLLVVDSVEGPMPQTRFVLKKALEFGHAV-VVVVNKIDRPS 218 (681)
Q Consensus 177 D~~llVvDa~~g~~~qt~~~l~~~~~~gip~-ivviNKiD~~~ 218 (681)
+.+++|..+..-....+...+..+...|+|+ -+|+|++.-..
T Consensus 232 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~ 274 (348)
T 3io3_A 232 TTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAE 274 (348)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCcccc
Confidence 5788888877766778888999999999985 67899998543
No 499
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=81.85 E-value=0.94 Score=52.81 Aligned_cols=98 Identities=13% Similarity=0.204 Sum_probs=0.0
Q ss_pred CCCccEEEEEeCCCCcHHHHHHHHHhhcCccccccceeeeeeccchhhcccceeEEeeeeEEeeCCeEEEEEeCCCcc--
Q 005713 86 RSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHS-- 163 (681)
Q Consensus 86 ~~~i~nV~IiG~~~~GKTTLi~~Ll~~~~~~~~~~~~~~~~~D~~~~E~erGiTi~~~~~~~~~~~~~i~iiDTPGh~-- 163 (681)
.....++.++|++|+|||+++..|.........+... .+..+.-+|. |..
T Consensus 198 ~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l---------------------------~~~~~~~~~~-g~~~~ 249 (758)
T 3pxi_A 198 RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEIL---------------------------RDKRVMTLDM-GTKYR 249 (758)
T ss_dssp CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTT---------------------------SSCCEECC--------
T ss_pred CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhh---------------------------cCCeEEEecc-ccccc
Q ss_pred -----chhHHHHHHHhhcceEEEEeeCCCCCchhhHHHHHHHHHcCCEEEEEEeecC
Q 005713 164 -----DFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKID 215 (681)
Q Consensus 164 -----df~~e~~~~l~~aD~~llVvDa~~g~~~qt~~~l~~~~~~gip~ivviNKiD 215 (681)
.+......+.. ...+||++| +.......++..+....+.+|..-|..+
T Consensus 250 G~~e~~l~~~~~~~~~-~~~~iLfiD---~~~~~~~~L~~~l~~~~v~~I~at~~~~ 302 (758)
T 3pxi_A 250 GEFEDRLKKVMDEIRQ-AGNIILFID---AAIDASNILKPSLARGELQCIGATTLDE 302 (758)
T ss_dssp ---CTTHHHHHHHHHT-CCCCEEEEC---C--------CCCTTSSSCEEEEECCTTT
T ss_pred chHHHHHHHHHHHHHh-cCCEEEEEc---CchhHHHHHHHHHhcCCEEEEeCCChHH
No 500
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=81.80 E-value=1.5 Score=44.76 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.7
Q ss_pred CccEEEEEeCCCCcHHHHHHHHHhh
Q 005713 88 DIRNIAIIAHVDHGKTTLVDAMLKQ 112 (681)
Q Consensus 88 ~i~nV~IiG~~~~GKTTLi~~Ll~~ 112 (681)
...++.+.|++|+||||++..+...
T Consensus 45 ~~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 45 SMPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3456999999999999999999875
Done!