Citrus Sinensis ID: 005713

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-

MDMAVSFYNNSSFSLLKPRTPHPSSYSSTLLAKQHFGYNLSSSPITTTSLKFRHCNTATQRHRRIQCSVSPPAETAAEKKSRLMRRSDIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENMRREGYEFMVGPPKVINKKVNDKLLEPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWAGDISTRDQGSLVAFEDGTTTSYALSSSQERGQMFLGPGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNIRSNKEQTVVLDTPLDYSLDDCIEYIQEDELVEVTPLSIRMCKNPKFAKRGR

cccEEEEcccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccEEEEEEEEccccHHHHHHHHHHHccccccccccccccccccccccccccEEEEccCEEEEccCEEEEEccccccccccHHHHHcccccEEEEEEEccccccccHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccccccccccHHHHHHHHccccccccccccccEEEEEEcccccccEEEEEEEEEEEEEccccEEEEEcccccEEEEEEEEEEEEcccccEEccccccccEEEEcccccccccccccccccccccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHcEEEEEECcccccEEEECccHHHHHHHHHHHccccccccEEcccEEEEEEEccCEcccEEEEEEEcccccHHHHHHHHHccccccccccccccccEEEEEEEccccccccccccHHccccccEEEEcccccccccccccccccccEEEEcccccHHHHHHccccccccEEccccccccccEEEEEcccccccccccccccccccccccccccccccccccccHHHHHcccccccEEEEccccEEccccccHHcccc

******************************LAKQHFGYNL*********LKFRHCNTA*****************************DIRNIAIIAHVDHGKTTLVDAMLKQAKVFRDNQTVKERIMDSNDLERERGITILSKNTSITYNDTKINIIDTPGHSDFGGEVERILNMVEGVLLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDYVINSTFELFIELNATDEQCDFQAIYASGIQGKAGLSPDNLADDLGPLFESIMRCIPGPRIEKDGALQMLATNLEYDEHKGRIAIGRLHAGVLRKGMEVRVCTSEDSCRYARISELFVYEKFSRVSAEIVAAGDICAVCGIDDIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMRVADGETADTFIVSGRGTLHITILIENMRREGYEFMVGPPKVINKKVNDKLLEPYEIATVEVPEEHMGPVVELLGKRRGQMFDMQGVGSEGTTFLKYKIPTRGLLGLRNAILTASRGTAILNTIFDGYGPWAGDISTRDQGSLVAFEDGTTTSYALSSSQERGQMFLGPGVDVYKGQIVGIHQRPGDLSLNVCKKKAATNIRSNKEQTVVLDTPLDYSLDDCIEYIQEDELVEVTPLSIRMCKN********

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Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
GTP-binding protein TypA/BipA homolog	Not known; probably interacts with the ribosomes in a GTP dependent manner.	probable	O07631
GTP-binding protein TypA/BipA	Not known; probably interacts with the ribosomes in a GTP dependent manner.	probable	P0A3B1
GTP-binding protein TypA/BipA	Probably interacts with the ribosomes in a GTP dependent manner. GTPase that mediates interactions between enteropathogenic E.coli (EPEC) and epithelial cells.	probable	P0A3B2

Prediction of Enzyme Commission Number

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2XEX, chain A
Confidence level:very confident
Coverage over the Query: 85-123,149-255,266-565
View the alignment between query and template
View the model in PyMOL

Template: 3E3X, chain A
Confidence level:very confident
Coverage over the Query: 386-623,637-681
View the alignment between query and template
View the model in PyMOL

Template: 3P27, chain A
Confidence level:probable
Coverage over the Query: 60-289,306-335
View the alignment between query and template
View the model in PyMOL