BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005714
         (681 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4A01|A Chain A, Crystal Structure Of The H-Translocating Pyrophosphatase
 pdb|4A01|B Chain B, Crystal Structure Of The H-Translocating Pyrophosphatase
          Length = 766

 Score = 1228 bits (3176), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 600/678 (88%), Positives = 646/678 (95%)

Query: 1   MGSTLLSELATEILVPVCAVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIE 60
           MG+ +L +L TEIL+PVCAV+GI F+L QW +VS+V+L+  R  S N+  KNG+NDYLIE
Sbjct: 1   MGAAILPDLGTEILIPVCAVIGIAFALFQWLLVSKVKLSAVRDASPNAAAKNGYNDYLIE 60

Query: 61  EEEGINDQSVVAKCADIQSAISEGATSFLFTEYQYVGVFMIAFAILIFVFLGSVEGFSTK 120
           EEEGIND +VV KCA+IQ+AISEGATSFLFTEY+YVG+FM+AFAILIF+FLGSVEGFST 
Sbjct: 61  EEEGINDHNVVVKCAEIQNAISEGATSFLFTEYKYVGIFMVAFAILIFLFLGSVEGFSTS 120

Query: 121 GQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANARTTLEARKSVG 180
            QAC+YD+ K CKPALATA FSTVSFLLG +TS++SGFLGMKIATYANARTTLEARK VG
Sbjct: 121 PQACSYDKTKTCKPALATAIFSTVSFLLGGVTSLVSGFLGMKIATYANARTTLEARKGVG 180

Query: 181 KAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGDDWEGLFEAITGYGLGGSSMALF 240
           KAFI AFRSGAVMGFLLAANGLLVL+IAINLFK+YYGDDW GLFEAITGYGLGGSSMALF
Sbjct: 181 KAFITAFRSGAVMGFLLAANGLLVLYIAINLFKIYYGDDWGGLFEAITGYGLGGSSMALF 240

Query: 241 GRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYA 300
           GRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYA
Sbjct: 241 GRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYA 300

Query: 301 ESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPS 360
           ESSCAALVVASISSFG+NHE T+MLYPL++SS+GILVCL+TTLFATD FE+KAVKEIEP+
Sbjct: 301 ESSCAALVVASISSFGLNHELTAMLYPLIVSSVGILVCLLTTLFATDFFEIKAVKEIEPA 360

Query: 361 LKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGF 420
           LKKQL+ISTVLMT+G+A+VS++ LP+SFTI+NFG QK VK+WQLFLCVAVGLWAGLIIGF
Sbjct: 361 LKKQLVISTVLMTIGVAVVSFVALPTSFTIFNFGVQKDVKSWQLFLCVAVGLWAGLIIGF 420

Query: 421 VTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMY 480
           VTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIA+SIFVSF+FAAMY
Sbjct: 421 VTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAISIFVSFTFAAMY 480

Query: 481 GIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIG 540
           GIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIG
Sbjct: 481 GIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIG 540

Query: 541 KGFAIGSAALVSLALFGAFVSRAGITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSA 600
           KGFAIGSAALVSLALFGAFVSRA ITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSA
Sbjct: 541 KGFAIGSAALVSLALFGAFVSRASITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSA 600

Query: 601 ALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFF 660
           ALKMVEEVRRQFNTIPGLMEGT KPDYATCVKISTDASIKEMIPPGALVMLTPL+VGI F
Sbjct: 601 ALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGALVMLTPLVVGILF 660

Query: 661 GVETLSGVLAGSLVSGVQ 678
           GVETLSGVLAGSLVSGVQ
Sbjct: 661 GVETLSGVLAGSLVSGVQ 678


>pdb|4AV3|A Chain A, Crystal Structure Of Thermotoga Maritima Sodium Pumping
           Membrane Integral Pyrophosphatase With Metal Ions In
           Active Site
 pdb|4AV3|B Chain B, Crystal Structure Of Thermotoga Maritima Sodium Pumping
           Membrane Integral Pyrophosphatase With Metal Ions In
           Active Site
 pdb|4AV6|A Chain A, Crystal Structure Of Thermotoga Maritima Sodium Pumping
           Membrane Integral Pyrophosphatase At 4 A In Complex With
           Phosphate And Magnesium
 pdb|4AV6|B Chain B, Crystal Structure Of Thermotoga Maritima Sodium Pumping
           Membrane Integral Pyrophosphatase At 4 A In Complex With
           Phosphate And Magnesium
          Length = 735

 Score =  393 bits (1009), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 247/648 (38%), Positives = 364/648 (56%), Gaps = 80/648 (12%)

Query: 73  KCADIQSAISEGATSFLFTEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMC 132
           +  +I S I  GA SFL  E + +    I  AIL+ +F                      
Sbjct: 43  RMKEISSYIRSGADSFLAHETKAIFKVAIVIAILLMIF---------------------- 80

Query: 133 KPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANARTTLEAR--KSVGKAFIVAFRSG 190
                T   + V+FLLGA+ S  +G +GMK+AT AN R    AR  K +G A  VA++ G
Sbjct: 81  -----TTWQTGVAFLLGAVMSASAGIVGMKMATRANVRVAEAARTTKKIGPALKVAYQGG 135

Query: 191 AVMGFLLAANGLLVLFIAINLFKLYYGD--------DWEGL-----FEAITGYGLGGSSM 237
           +VMG  +    LL L +   +F  + G         +W G+        ++GY LG S +
Sbjct: 136 SVMGLSVGGFALLGLVLVYLIFGKWMGQVDNLNIYTNWLGINFVPFAMTVSGYALGCSII 195

Query: 238 ALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFG 297
           A+F RVGGG+YTKAAD+ ADLVGK E N+PEDDPRNPA IADNVGDNVGD+AG+G+DL  
Sbjct: 196 AMFDRVGGGVYTKAADMAADLVGKTELNLPEDDPRNPATIADNVGDNVGDVAGLGADLLE 255

Query: 298 SYAESSCAALVVAS------ISSFGIN--HEFTS------MLYPLLISSIGILVCLITTL 343
           S+  +  +++++AS      +   G N  H+         + YP+  + +G+   ++  L
Sbjct: 256 SFVGAIVSSIILASYMFPIYVQKIGENLVHQVPKETIQALISYPIFFALVGLGCSMLGIL 315

Query: 344 FATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTI----YNFGAQKVV 399
           +   +   K     +  L   L  S +L  V  A +++  L     +    + FGA   +
Sbjct: 316 Y---VIVKKPSDNPQRELNISLWTSALLTVVLTAFLTYFYLKDLQGLDVLGFRFGA---I 369

Query: 400 KNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSV 459
             W       +G+++G++IGF  EYYTS  Y P Q +  S   G    +  GL+LG KSV
Sbjct: 370 SPW---FSAIIGIFSGILIGFWAEYYTSYRYKPTQFLGKSSIEGTGMVISNGLSLGMKSV 426

Query: 460 IIPIFAIAVSIFVSFSFAAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMS 519
             P   + + I  +  FA +YG+A+AALGMLS +AT +++D+YGPI+DNAGGI+EM  + 
Sbjct: 427 FPPTLTLVLGILFADYFAGLYGVAIAALGMLSFVATSVSVDSYGPIADNAGGISEMCELD 486

Query: 520 HRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFV------SRAG-----ITTV 568
             +R+ TD LDA GNTTAAIGKGFAIGSA   +L+LF +++      S  G     +  +
Sbjct: 487 PEVRKITDHLDAVGNTTAAIGKGFAIGSAIFAALSLFASYMFSQISPSDIGKPPSLVLLL 546

Query: 569 DVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYA 628
           ++L  +V  G ++GA + Y+FS   + +V  AA+KMV+E+RRQ   IPGL+EG  KPDY 
Sbjct: 547 NMLDARVIAGALLGAAITYYFSGYLISAVTKAAMKMVDEIRRQAREIPGLLEGKAKPDYN 606

Query: 629 TCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSG 676
            C++I++D ++K+M  P  + +LTPL+ G   G E + GVL G+++SG
Sbjct: 607 RCIEITSDNALKQMGYPAFIAILTPLVTGFLLGAEFVGGVLIGTVLSG 654


>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
          Length = 301

 Score = 31.2 bits (69), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 16/135 (11%)

Query: 357 IEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGL 416
           ++P  +K  I+++     G + ++ +GL     + +     +  +W +F+ +  GL+   
Sbjct: 5   MKPPARKPRILNSD----GSSNITRLGLEKRGWLDDHYHDLLTVSWPVFITLITGLY--- 57

Query: 417 IIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIF-----GLALGYKSVIIPIFAIAVSIF 471
               VT    + AY    DV ++ R G+ T+  F        +GY   +IPI  +A ++ 
Sbjct: 58  ---LVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGK-LIPIGPLANTLV 113

Query: 472 VSFSFAAMYGIAVAA 486
              +   M G+AVAA
Sbjct: 114 TLEALCGMLGLAVAA 128


>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2X6C|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
          Length = 301

 Score = 31.2 bits (69), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 16/135 (11%)

Query: 357 IEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGL 416
           ++P  +K  I+++     G + ++ +GL     + +     +  +W +F+ +  GL+   
Sbjct: 5   MKPPARKPRILNSD----GSSNITRLGLEKRGWLDDHYHDLLTVSWPVFITLITGLY--- 57

Query: 417 IIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIF-----GLALGYKSVIIPIFAIAVSIF 471
               VT    + AY    DV ++ R G+ T+  F        +GY   +IPI  +A ++ 
Sbjct: 58  ---LVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGK-LIPIGPLANTLV 113

Query: 472 VSFSFAAMYGIAVAA 486
              +   M G+AVAA
Sbjct: 114 TLEALCGMLGLAVAA 128


>pdb|1XL4|A Chain A, Intermediate Gating Structure 1 Of The Inwardly Rectifying
           K+ Channel Kirbac3.1
 pdb|1XL4|B Chain B, Intermediate Gating Structure 1 Of The Inwardly Rectifying
           K+ Channel Kirbac3.1
 pdb|1XL6|A Chain A, Intermediate Gating Structure 2 Of The Inwardly Rectifying
           K+ Channel Kirbac3.1
 pdb|1XL6|B Chain B, Intermediate Gating Structure 2 Of The Inwardly Rectifying
           K+ Channel Kirbac3.1
 pdb|2WLH|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLI|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLJ|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLJ|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLK|A Chain A, Structure Of The Atp-Sensitive Inward Rectifier Potassium
           Channel From Magnetospirillum Magnetotacticum
 pdb|2WLK|B Chain B, Structure Of The Atp-Sensitive Inward Rectifier Potassium
           Channel From Magnetospirillum Magnetotacticum
 pdb|2WLM|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLM|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLM|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLM|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLO|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLO|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
          Length = 301

 Score = 31.2 bits (69), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 16/135 (11%)

Query: 357 IEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGL 416
           ++P  +K  I+++     G + ++ +GL     + +     +  +W +F+ +  GL+   
Sbjct: 5   MKPPARKPRILNSD----GSSNITRLGLEKRGWLDDHYHDLLTVSWPVFITLITGLY--- 57

Query: 417 IIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIF-----GLALGYKSVIIPIFAIAVSIF 471
               VT    + AY    DV ++ R G+ T+  F        +GY   +IPI  +A ++ 
Sbjct: 58  ---LVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGK-LIPIGPLANTLV 113

Query: 472 VSFSFAAMYGIAVAA 486
              +   M G+AVAA
Sbjct: 114 TLEALCGMLGLAVAA 128


>pdb|3ZRS|A Chain A, X-Ray Crystal Structure Of A Kirbac Potassium Channel
           Highlights A Mechanism Of Channel Opening At The
           Bundle-Crossing Gate
          Length = 301

 Score = 31.2 bits (69), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 16/135 (11%)

Query: 357 IEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGL 416
           ++P  +K  I+++     G + ++ +GL     + +     +  +W +F+ +  GL+   
Sbjct: 5   MKPPARKPRILNSD----GSSNITRLGLEKRGWLDDHYHDLLTVSWPVFITLITGLY--- 57

Query: 417 IIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIF-----GLALGYKSVIIPIFAIAVSIF 471
               VT    + AY    DV ++ R G+ T+  F        +GY   +IPI  +A ++ 
Sbjct: 58  ---LVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGK-LIPIGPLANTLV 113

Query: 472 VSFSFAAMYGIAVAA 486
              +   M G+AVAA
Sbjct: 114 TLEALCGMLGLAVAA 128


>pdb|2WLI|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
          Length = 301

 Score = 30.8 bits (68), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 16/135 (11%)

Query: 357 IEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGL 416
           ++P  +K  I+++     G + ++ +GL     + +     +  +W +F+ +  GL+   
Sbjct: 5   MKPPARKPRILNSD----GSSNITRLGLEKRGWLDDHYHDLLTVSWPVFITLITGLY--- 57

Query: 417 IIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIF-----GLALGYKSVIIPIFAIAVSIF 471
               VT    + AY    DV ++ R G+ T+  F        +GY   +IPI  +A ++ 
Sbjct: 58  ---LVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGK-LIPIGPLANTLV 113

Query: 472 VSFSFAAMYGIAVAA 486
              +   M G+AVAA
Sbjct: 114 TLEALCGMLGLAVAA 128


>pdb|2WLN|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLN|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLN|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLN|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLN|E Chain E, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLN|F Chain F, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLN|G Chain G, Potassium Channel From Magnetospirillum Magnetotacticum
 pdb|2WLN|H Chain H, Potassium Channel From Magnetospirillum Magnetotacticum
          Length = 301

 Score = 30.8 bits (68), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 62/135 (45%), Gaps = 16/135 (11%)

Query: 357 IEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGL 416
           ++P  +K  I+++     G + ++ +GL     + +     +  +W +F+ +  GL+   
Sbjct: 5   MKPPARKPRILNSD----GSSNITRLGLEKRGWLDDHYHDLLTVSWPVFITLITGLY--- 57

Query: 417 IIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIF-----GLALGYKSVIIPIFAIAVSIF 471
               VT    + AY    DV ++ R G+ T+  F        +GY   +IPI  +A ++ 
Sbjct: 58  ---LVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGK-LIPIGPLANTLV 113

Query: 472 VSFSFAAMYGIAVAA 486
              +   M G+AVAA
Sbjct: 114 TLEALCGMLGLAVAA 128


>pdb|1QUS|A Chain A, 1.7 A Resolution Structure Of The Soluble Lytic
           Transglycosylase Slt35 From Escherichia Coli
 pdb|1QUT|A Chain A, The Soluble Lytic Transglycosylase Slt35 From Escherichia
           Coli In Complex With N-Acetylglucosamine
 pdb|1QDR|A Chain A, 2.1 A Resolution Structure Of Escherichia Coli Lytic
           Transglycosylase Slt35
 pdb|1QDT|A Chain A, 2.1 A Resolution Structure Of Escherichia Coli Lytic
           Transglycoyslase Slt35 In Complex With Calcium
 pdb|1D0K|A Chain A, The Escherichia Coli Lytic Transglycosylase Slt35 In
           Complex With Two Murodipeptides
           (Glcnac-Murnac-L-Ala-D-Glu)
 pdb|1D0L|A Chain A, The Escherichia Coli Lytic Transglycosylase Slt35 In
           Complex With Bulgecin A
 pdb|1D0M|A Chain A, The Escherichia Coli Lytic Transglycosylase Slt35 In
           Complex With Bulgecin A And (Glcnac)2
          Length = 322

 Score = 29.6 bits (65), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 368 STVLMTVGIAIVSWIGLPSSFTI--YNFGAQKVVKNWQLFLCVAV 410
           S + + VG     W GLP+ +TI  YN      +  WQL   VA+
Sbjct: 274 SLLRLDVGTGYQYWYGLPNFYTITRYNHSTHYAMAVWQLGQAVAL 318


>pdb|1LTM|A Chain A, Accelerated X-ray Structure Elucidation Of A 36 Kda
           Muramidase/transglycosylase Using Warp
          Length = 320

 Score = 29.3 bits (64), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 368 STVLMTVGIAIVSWIGLPSSFTI--YNFGAQKVVKNWQLFLCVAV 410
           S + + VG     W GLP+ +TI  YN      +  WQL   VA+
Sbjct: 272 SLLRLDVGTGYQYWYGLPNFYTITRYNHSTHYAMAVWQLGQAVAL 316


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,107,913
Number of Sequences: 62578
Number of extensions: 722470
Number of successful extensions: 1501
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1490
Number of HSP's gapped (non-prelim): 19
length of query: 681
length of database: 14,973,337
effective HSP length: 105
effective length of query: 576
effective length of database: 8,402,647
effective search space: 4839924672
effective search space used: 4839924672
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)