Query 005714
Match_columns 681
No_of_seqs 152 out of 752
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 12:38:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005714.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005714hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02255 H(+) -translocating i 100.0 2E-217 5E-222 1801.3 64.9 679 3-681 1-680 (765)
2 TIGR01104 V_PPase vacuolar-typ 100.0 1E-212 3E-217 1752.8 58.3 615 11-681 3-617 (697)
3 PLN02277 H(+) -translocating i 100.0 3E-208 6E-213 1727.3 56.6 617 18-681 2-661 (730)
4 PF03030 H_PPase: Inorganic H+ 100.0 8E-207 2E-211 1718.8 47.4 604 19-681 1-617 (682)
5 PRK00733 hppA membrane-bound p 100.0 7E-203 2E-207 1674.3 55.8 580 59-681 2-592 (666)
6 COG3808 OVP1 Inorganic pyropho 100.0 1E-200 3E-205 1597.0 49.1 607 11-681 5-629 (703)
7 COG3104 PTR2 Dipeptide/tripept 77.6 57 0.0012 38.0 14.9 77 245-349 132-209 (498)
8 PF03030 H_PPase: Inorganic H+ 75.8 40 0.00086 40.7 13.4 69 570-647 595-667 (682)
9 COG1174 OpuBB ABC-type proline 54.2 31 0.00068 36.2 6.3 50 458-524 71-122 (221)
10 PRK11677 hypothetical protein; 49.9 21 0.00045 34.7 3.9 33 405-437 3-35 (134)
11 TIGR00833 actII Transport prot 48.3 1.7E+02 0.0037 36.4 12.3 92 457-559 198-295 (910)
12 PF06800 Sugar_transport: Suga 47.2 2.4E+02 0.0052 30.5 11.7 100 330-455 105-206 (269)
13 COG3808 OVP1 Inorganic pyropho 44.7 2.3E+02 0.005 33.7 11.6 132 329-501 8-151 (703)
14 PF03649 UPF0014: Uncharacteri 38.8 1.1E+02 0.0025 32.4 7.7 92 567-676 117-211 (250)
15 PF00344 SecY: SecY translocas 37.9 1.4E+02 0.0029 32.9 8.4 114 543-660 202-323 (346)
16 PF12670 DUF3792: Protein of u 37.2 3.5E+02 0.0075 25.2 10.8 102 298-417 14-115 (116)
17 PF08006 DUF1700: Protein of u 35.0 4.6E+02 0.0099 25.9 11.6 19 193-211 142-160 (181)
18 COG4177 LivM ABC-type branched 33.7 1.1E+02 0.0023 33.7 6.7 49 520-569 187-238 (314)
19 PTZ00219 Sec61 alpha subunit; 33.5 98 0.0021 35.8 6.7 70 585-657 372-441 (474)
20 PRK15374 pathogenicity island 33.1 2.6E+02 0.0057 33.2 9.9 88 501-612 369-460 (593)
21 TIGR00245 conserved hypothetic 31.8 48 0.001 35.2 3.6 77 591-676 129-205 (248)
22 COG4214 XylH ABC-type xylose t 29.9 2.6E+02 0.0056 31.7 8.8 115 72-193 218-338 (394)
23 PRK01610 putative voltage-gate 27.8 3.7E+02 0.008 30.4 9.9 16 570-585 321-336 (418)
24 TIGR00921 2A067 The (Largely A 27.4 4.2E+02 0.0092 31.4 10.8 90 459-559 220-310 (719)
25 PF12331 DUF3636: Protein of u 27.4 47 0.001 32.9 2.4 22 487-508 49-70 (149)
26 KOG0860 Synaptobrevin/VAMP-lik 26.9 1.5E+02 0.0032 28.4 5.5 24 71-94 59-88 (116)
27 PF04911 ATP-synt_J: ATP synth 26.0 28 0.0006 29.1 0.5 7 269-275 39-45 (54)
28 PF00110 wnt: wnt family; Int 25.5 66 0.0014 35.1 3.4 24 593-616 22-45 (310)
29 PF03672 UPF0154: Uncharacteri 25.1 1.2E+02 0.0026 26.2 4.1 31 575-619 3-33 (64)
30 PF12263 DUF3611: Protein of u 24.7 5E+02 0.011 26.6 9.2 24 478-501 111-134 (183)
31 PRK00733 hppA membrane-bound p 24.3 4.4E+02 0.0094 32.2 9.9 141 140-296 484-645 (666)
32 PF15176 LRR19-TM: Leucine-ric 23.4 83 0.0018 29.4 3.1 36 401-436 16-58 (102)
33 TIGR01104 V_PPase vacuolar-typ 22.6 5E+02 0.011 31.8 10.0 143 141-296 510-675 (697)
34 PF00957 Synaptobrevin: Synapt 22.0 2.4E+02 0.0052 24.6 5.7 40 71-110 40-83 (89)
35 COG3105 Uncharacterized protei 21.9 1.2E+02 0.0025 29.8 3.9 29 404-432 7-35 (138)
36 COG1269 NtpI Archaeal/vacuolar 21.8 1.4E+03 0.03 27.8 13.6 101 323-425 365-483 (660)
37 smart00097 WNT1 found in Wnt-1 21.5 83 0.0018 34.4 3.2 23 593-615 19-41 (305)
38 KOG0793 Protein tyrosine phosp 20.9 40 0.00086 40.8 0.7 16 265-280 794-809 (1004)
39 PF14045 YIEGIA: YIEGIA protei 20.8 2.1E+02 0.0045 31.2 5.9 79 332-438 37-157 (285)
40 PRK01844 hypothetical protein; 20.7 1.6E+02 0.0035 26.1 4.1 39 575-643 10-48 (72)
41 PF06295 DUF1043: Protein of u 20.3 1.1E+02 0.0024 29.1 3.5 25 408-432 2-26 (128)
42 TIGR00966 3a0501s07 protein-ex 20.3 2.2E+02 0.0048 29.7 6.0 34 603-643 170-203 (246)
43 COG5336 Uncharacterized protei 20.0 1.3E+02 0.0028 28.7 3.7 26 402-427 46-71 (116)
No 1
>PLN02255 H(+) -translocating inorganic pyrophosphatase
Probab=100.00 E-value=2.1e-217 Score=1801.26 Aligned_cols=679 Identities=89% Similarity=1.349 Sum_probs=620.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhheeccCCCCCCCCC-CCCCCCCcchhhhhhcCCCchhhcHHHHHHHHHH
Q 005714 3 STLLSELATEILVPVCAVVGIIFSLVQWFIVSRVRLTHERPPSSN-SDKKNGFNDYLIEEEEGINDQSVVAKCADIQSAI 81 (681)
Q Consensus 3 ~~~~~~~a~~~~~~~~~~~~l~~a~~~~~~v~~v~~~~~~~~~~~-~~~~~g~~~~~~~~~~g~~~~~~~~~m~~Is~~I 81 (681)
++++||+++..+++++++++++||+++++||+|.+.++++.+++. .+..++++++..++++|++++++++|||||+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~~~e~~eG~~~~~~~~~m~~Ia~~I 80 (765)
T PLN02255 1 MAILSELATEVLIPVAALIGIAFALLQWYLVSRVKVSPDSGASSNGGGGGGGYGDYLIEEEEGLNDHNVVAKCAEIQNAI 80 (765)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccccccccccccccccccccccCccccccCHHHHHHHHHH
Confidence 468999999999999999999999999999999887665444333 3455666667777777777788899999999999
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccCCCcccccccccccchhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 005714 82 SEGATSFLFTEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGM 161 (681)
Q Consensus 82 ~eGA~afL~~qyk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~laG~iGM 161 (681)
||||++||+||||++++|++++++++++++.+.++.+++++++.++....|..+....++++++|++|+++|.++||+||
T Consensus 81 ~eGA~afL~rqyk~i~~~~vv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fl~Ga~~S~~aG~iGM 160 (765)
T PLN02255 81 SEGATSFLFTEYKYVGIFMVIFAAVIFVFLGSVEGFSTKSQPCTYDKGKLCKPALANAAFSTVAFLLGALTSVVSGFLGM 160 (765)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999766654323333444555555566677777778899999999999999999999
Q ss_pred hhhhhhhHhhHHHHhhCHhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHhhhcchhhHHHHHH
Q 005714 162 KIATYANARTTLEARKSVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGDDWEGLFEAITGYGLGGSSMALFG 241 (681)
Q Consensus 162 ~vAt~aN~Rta~aA~~~~~~al~vafr~GsVmGl~vvglgLl~l~~~~~~~~~~~~~~~~~~~~~i~gf~~GaS~iALFa 241 (681)
|+|||+|+|||+|||++++++|++|||+|+||||+|++++|++++++|++|..+++++..+.++++.||+||+|++|||+
T Consensus 161 ~vat~ANvRtA~AA~~gl~~al~vAfr~GaVmGl~vvgl~Llgl~~~~~~~~~~~~~~~~~~~~~l~Gfg~GaS~iAlFa 240 (765)
T PLN02255 161 KIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLLVLYIAINLFKLYYGDDWEGLYEAITGYGLGGSSMALFG 240 (765)
T ss_pred HHHHHHHHHHHHHHHhchHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhHHhhhcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998864455444446789999999999999999
Q ss_pred HhhccccchhhhhcccccchhhcCCCCCCCCCcchhhccccccccccccccchhhhhhHHHHHHHHHHHHHhhcCCCccc
Q 005714 242 RVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEF 321 (681)
Q Consensus 242 RvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFESy~~si~aamil~~~~~~~~~~~~ 321 (681)
|+||||||||||||||||||||+|||||||||||||||||||||||||||+|||||||+++++|+|+++....++.+.++
T Consensus 241 RvGGGIyTKAADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADLFESy~~s~vaamilg~~~~~~~~~~~ 320 (765)
T PLN02255 241 RVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHDF 320 (765)
T ss_pred HHcCceeeeccccchhhhhhhhcCCCCCCCCCcchHHHhhcccccccccccchhHHHHHHHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999963212333334
Q ss_pred ccchHhHHHHHHHHHHHHHHHhhhhhhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccccch
Q 005714 322 TSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKN 401 (681)
Q Consensus 322 ~~v~~Pl~v~a~gil~Siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~~l~~v~~~~~~~~~l~~~~~~~~~g~~~~~~~ 401 (681)
..+.|||+++++||++|++|++++|.++|.++++|++++||+++|+|++++++.+|++++|++|.++..+..++....++
T Consensus 321 ~~v~~PLli~~~gii~siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~~l~~v~~~~~~~~~l~~~~~~~~~g~~~~~~~ 400 (765)
T PLN02255 321 TAMCYPLLISSVGIIVCLITTLFATDFFEIKAVKEIEPALKKQLIISTVLMTVGIAVVSWLALPSSFTIFNFGTQKVVKN 400 (765)
T ss_pred chhhHHHHHHHHHHHHHHHHHHheecccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccccccccccc
Confidence 46999999999999999999999986677777779999999999999999999999999999986543332233234457
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHHHHhhcccCCchhHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005714 402 WQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYG 481 (681)
Q Consensus 402 ~~~f~~~~~Gl~~g~lI~~~TeYyTS~~~~PVr~IA~as~tG~ATnII~Gla~Gm~St~~Pvl~I~~ai~~sy~l~GlyG 481 (681)
|++|+|+++|+++|++|+++||||||++|||||+||++|+||||||||+||++||+||+||+++|++++++||+++|+||
T Consensus 401 ~~~f~~~~iGl~~g~lI~~iTeYyTs~~y~PV~~IA~aS~tG~ATnII~GlavGm~St~~Pvl~I~~ai~~sy~l~glyG 480 (765)
T PLN02255 401 WQLFFCVAIGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIYVSFSLAAMYG 480 (765)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCcchHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhHhhhhccccccccCCcchhhccCCchHHHHHhhhhhccCcccccccchhhHHHHHHHHHHHHHHHHh
Q 005714 482 IAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVS 561 (681)
Q Consensus 482 ialAa~GMLst~~i~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDavGNTTaAi~KGfaIGSAaL~aLaLf~ay~~ 561 (681)
+|+|++|||||+++++++|+||||+||||||||||++|||||+|||+||++||||||++||||||||+|+||+||++|++
T Consensus 481 iaiAa~GMLst~g~~la~DayGPIaDNAGGIaEMs~l~~~VR~~TD~LDAvGNTTkAi~KGfAIGSAaLaalaLF~ay~~ 560 (765)
T PLN02255 481 IAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVS 560 (765)
T ss_pred HHHHHHHHHHHhHHhheeecccCcccCccCHHHHhcCCHHHHHHhhhhcccCCchhhhcccchhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccceeecCChhHHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhh
Q 005714 562 RAGITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKE 641 (681)
Q Consensus 562 ~~~~~~~~l~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~aAlke 641 (681)
+.++..+|+.||+|++|+|+|+|+|||||+++|+||||+|++|||||||||||||||||||+||||+||||||||+||||
T Consensus 561 ~~~~~~~~l~~P~Vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGimeG~~kPDY~~cV~I~T~aAlke 640 (765)
T PLN02255 561 RAGISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKE 640 (765)
T ss_pred hcCCCeeecCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhcCCCCCChHHHHHHHHHHHHHh
Confidence 98888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhchhhHHHHhHHHHHhhhhhhHHHHHhhhhhhhhceecC
Q 005714 642 MIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQYRL 681 (681)
Q Consensus 642 Mi~Pgllail~Pi~vG~~~G~~al~GlL~G~~~sG~~lAi 681 (681)
||+|+++++++|+++|++||+++++|+|+|+++||++||+
T Consensus 641 Mi~Pgll~v~~Pi~vg~~~G~~al~GlL~G~~vsGv~lAi 680 (765)
T PLN02255 641 MIPPGALVMLTPLIVGTLFGVETLSGVLAGALVSGVQIAI 680 (765)
T ss_pred hhHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999985
No 2
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=100.00 E-value=1.4e-212 Score=1752.77 Aligned_cols=615 Identities=84% Similarity=1.301 Sum_probs=571.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhheeccCCCCCCCCCCCCCCCCcchhhhhhcCCCchhhcHHHHHHHHHHHHhhhhhhh
Q 005714 11 TEILVPVCAVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIEEEEGINDQSVVAKCADIQSAISEGATSFLF 90 (681)
Q Consensus 11 ~~~~~~~~~~~~l~~a~~~~~~v~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~m~~Is~~I~eGA~afL~ 90 (681)
+.|+++++++++++|++++++||+ |+|+| +|+|||||++|||||++||+
T Consensus 3 ~~~~~~~~~~~gl~~a~~~~~~v~-------------------------~~~~G------~~~M~~Ia~~I~eGA~afL~ 51 (697)
T TIGR01104 3 TEILIPVCAVIGIAYAVLQWVWVS-------------------------RVKLG------TAKMAEIQQAISEGATAFLF 51 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-------------------------cCCCC------cHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999999999873 67789 99999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhcccccccCCCcccccccccccchhhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHh
Q 005714 91 TEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANAR 170 (681)
Q Consensus 91 ~qyk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~laG~iGM~vAt~aN~R 170 (681)
||||++++|++++++++++++.+.+. .+++++++|++|+++|.+|||+|||+|||+|+|
T Consensus 52 rqyk~i~~~~vi~~v~l~~~~~~~~~---------------------~~~~~a~~Fl~Ga~~S~laG~iGM~iat~aNvR 110 (697)
T TIGR01104 52 TEYKYVAVFMVAFAVLIFVFLGSREG---------------------FSDFSTVAFLLGAVTSLLAGYLGMKIATYANAR 110 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc---------------------chhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999998765432110 012799999999999999999999999999999
Q ss_pred hHHHHhhCHhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHhhhcchhhHHHHHHHhhccccch
Q 005714 171 TTLEARKSVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGDDWEGLFEAITGYGLGGSSMALFGRVGGGIYTK 250 (681)
Q Consensus 171 ta~aA~~~~~~al~vafr~GsVmGl~vvglgLl~l~~~~~~~~~~~~~~~~~~~~~i~gf~~GaS~iALFaRvGGGIyTK 250 (681)
||+|||++++++|++|||||+||||+|++|+|+++.++|++|+.+++++..++++++.||+||+|++|||+|+|||||||
T Consensus 111 tA~AA~~~~~~al~vafrgGaVmGl~vvgl~Llgl~~~~~i~~~~~~~~~~~~~~~l~Gfg~GaS~iALFaRvGGGIyTK 190 (697)
T TIGR01104 111 TTLEARKGVGKALIVAFRSGAVMGFLLAGLGLLVLYITILVFKIYYGDDWEGLFEPITGYGFGASSMALFGRVGGGIYTK 190 (697)
T ss_pred HHHHHHhCHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHhcccCchhhhhhhHHhhhcccHHHHHHHHHHcCceeee
Confidence 99999999999999999999999999999999999999999865444444446789999999999999999999999999
Q ss_pred hhhhcccccchhhcCCCCCCCCCcchhhccccccccccccccchhhhhhHHHHHHHHHHHHHhhcCCCcccccchHhHHH
Q 005714 251 AADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLI 330 (681)
Q Consensus 251 AADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFESy~~si~aamil~~~~~~~~~~~~~~v~~Pl~v 330 (681)
|||||||||||||+|||||||||||||||||||||||||||||||||||+++++|+|+|+....++.+.++..+.|||++
T Consensus 191 AADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADlFESy~~s~iaamvlg~~~~~~~~~~~~~v~~Pl~~ 270 (697)
T TIGR01104 191 AADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDIAGMGADLFESYAESSCAALVLASISSFGLPHDFTAMLYPLAL 270 (697)
T ss_pred ccccchhhhcccccCCCCCCCCCchhHHHhcCCcccchhcccchHHHHHHHHHHHHHHHhhhhhcccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999963212222223358999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccccchhHHHHHHHH
Q 005714 331 SSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAV 410 (681)
Q Consensus 331 ~a~gil~Siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~~l~~v~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~f~~~~~ 410 (681)
+++||++|++|++++| .++++|++++||+++|+|++++++.+|++++|++|..+..+..++....++|++|+|+++
T Consensus 271 ~~~gi~~Siig~~~v~----~~~~~~~~~aL~~g~~~s~~l~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~ 346 (697)
T TIGR01104 271 SSVGILVCLLTTLFVK----IKPVKEIEPALKKQLIISTVLMTVGVAVISWVALPTGFTIFNFGTQKEVSNWQLFLCVAV 346 (697)
T ss_pred HHHHHHHHHHHheEEe----cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchHHHHHHHHH
Confidence 9999999999999974 455668999999999999999999999999999987544322222234567899999999
Q ss_pred HHHHHHHHHHHhhhhccCCCchhHHHHhhcccCCchhHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005714 411 GLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGML 490 (681)
Q Consensus 411 Gl~~g~lI~~~TeYyTS~~~~PVr~IA~as~tG~ATnII~Gla~Gm~St~~Pvl~I~~ai~~sy~l~GlyGialAa~GML 490 (681)
|+++|++|+++||||||++||||||||++|+||||||||+||++||+||++|+++|++++++||+++|+||+|+|++|||
T Consensus 347 Gl~~g~lI~~iTeYyTs~~y~PV~~IA~as~tG~AtnII~Gla~Gm~St~~pvl~I~~~i~~sy~~~GlyGiaiAa~GML 426 (697)
T TIGR01104 347 GLWAGLLIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAASIIVSFSFAGMYGIAMAALGML 426 (697)
T ss_pred HHHHHHHHHHhheeecCCCCCcHHHHHHHhCcCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhhhccccccccCCcchhhccCCchHHHHHhhhhhccCcccccccchhhHHHHHHHHHHHHHHHHhhhccceeec
Q 005714 491 STIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAGITTVDV 570 (681)
Q Consensus 491 st~~i~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDavGNTTaAi~KGfaIGSAaL~aLaLf~ay~~~~~~~~~~l 570 (681)
||+++++++|+||||+||||||||||++|||||++||+||++||||||++||||||||+|+||+||++|+++.++..+|+
T Consensus 427 st~g~~la~DayGPIaDNAgGIaEMs~l~~~VR~~TD~LDavGNTT~Ai~KGfAIGSAaL~alaLF~ay~~~~~~~~~~l 506 (697)
T TIGR01104 427 STAGTGLAIDAYGPISDNAGGIAEMAGLPHRVRERTDALDAVGNTTAAIGKGFAIGSAALVALALFGAFVSRAVITTVDV 506 (697)
T ss_pred HHhhheeeeecccCcccCcccHHHHhcCCHHHHHhhhhccccCCcchhhccceehhhHHHHHHHHHHHHHHHhccCeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888999
Q ss_pred CChhHHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhhchhhHHH
Q 005714 571 LTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVM 650 (681)
Q Consensus 571 ~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~aAlkeMi~Pgllai 650 (681)
.||+|++|+|+|+|+|||||+++|+||||+|++||||||||||||||||||++||||+||||||||+||||||+|+++++
T Consensus 507 ~~p~vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGi~eG~~kPdY~~cV~I~T~aAlkeMi~Pgll~i 586 (697)
T TIGR01104 507 LTPKVFIGLFVGAMLPYWFSSMTMKSVGRAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIKEMIPPGLLVM 586 (697)
T ss_pred CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCCCCcHHHHHHHHHHHHHhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHhhhhhhHHHHHhhhhhhhhceecC
Q 005714 651 LTPLIVGIFFGVETLSGVLAGSLVSGVQYRL 681 (681)
Q Consensus 651 l~Pi~vG~~~G~~al~GlL~G~~~sG~~lAi 681 (681)
++|+++|++||+++++|+|+|+++||++||+
T Consensus 587 ~~Pi~vG~~~G~~al~GlL~G~~vsG~~lAi 617 (697)
T TIGR01104 587 LTPLIVGFLFGVETLSGVLAGVLVSGVQIAI 617 (697)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999985
No 3
>PLN02277 H(+) -translocating inorganic pyrophosphatase
Probab=100.00 E-value=2.8e-208 Score=1727.34 Aligned_cols=617 Identities=39% Similarity=0.630 Sum_probs=555.3
Q ss_pred HHHHHHHHHHHHHHHhheeccCCCCCCCCCCCCCCCCcchhhhhhcCCCchhhcHHHHHHHHHHHHhhhhhhhhhhhHHH
Q 005714 18 CAVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIEEEEGINDQSVVAKCADIQSAISEGATSFLFTEYQYVG 97 (681)
Q Consensus 18 ~~~~~l~~a~~~~~~v~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~m~~Is~~I~eGA~afL~~qyk~i~ 97 (681)
+++++|+||+++++||+ |||+| +|+|||||++|||||++||+||||+++
T Consensus 2 ~~~l~l~~a~~~~~~v~-------------------------~~~~G------~~~M~~Ia~~I~eGA~afL~~qyk~i~ 50 (730)
T PLN02277 2 VCIISLLFSLYLTKWVL-------------------------AKDEG------PPEMVEISDAIRDGAEGFFRTQYGTIS 50 (730)
T ss_pred hHHHHHHHHHHHHHHHH-------------------------cCCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999873 67789 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccCCCcccccccccccchhhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhhHHHHhh
Q 005714 98 VFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANARTTLEARK 177 (681)
Q Consensus 98 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~laG~iGM~vAt~aN~Rta~aA~~ 177 (681)
+|++++++++++++.+. ..+++ |+ ....+....++++++||++|+++|.+|||+|||+|||+|+|||+|||+
T Consensus 51 ~~~vv~~~~l~~~~~~~-~~~~~-~~------~~~~~~~~~~~~~a~~Fl~Ga~~S~laG~iGM~vAt~aNvRtA~AA~~ 122 (730)
T PLN02277 51 KMAVVLAFVILGIYLFR-SLTPQ-QE------AAGLGRATSAYITVASFLLGALCSGIAGYVGMWVSVRANVRVSSAARR 122 (730)
T ss_pred HHHHHHHHHHHHHHhcc-ccccc-cc------cccccchhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 99999999987654321 11111 00 011122224678999999999999999999999999999999999999
Q ss_pred CHhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcCC------CchhhHHHHhhhcchhhHHHHHHHhhccccchh
Q 005714 178 SVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGD------DWEGLFEAITGYGLGGSSMALFGRVGGGIYTKA 251 (681)
Q Consensus 178 ~~~~al~vafr~GsVmGl~vvglgLl~l~~~~~~~~~~~~~------~~~~~~~~i~gf~~GaS~iALFaRvGGGIyTKA 251 (681)
+++++|++|||||+||||+|+||+|+++.++|++|..++.. +..+.+++++||+||+|++|||+|+||||||||
T Consensus 123 ~~~~al~vAfrgGaVmGl~vvgl~Llgl~~~~~i~~~~~~~~~~~~~~~~~~~~~l~Gfg~GaS~iALFaRvGGGIyTKA 202 (730)
T PLN02277 123 SAREALQIAVRAGGFSALVVVGMTVLGVAILYATFYVWLGVDSPGGMKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKA 202 (730)
T ss_pred CHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHHHhhhccHHHHHHHHHHcCceeeec
Confidence 99999999999999999999999999999999888644321 122367799999999999999999999999999
Q ss_pred hhhcccccchhhcCCCCCCCCCcchhhccccccccccccccchhhhhhHHHHHHHHHHHHHhhc--CCCcccccchHhHH
Q 005714 252 ADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSF--GINHEFTSMLYPLL 329 (681)
Q Consensus 252 ADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFESy~~si~aamil~~~~~~--~~~~~~~~v~~Pl~ 329 (681)
||||||||||||+|||||||||||||||||||||||||||||||||||++++|++|+|+..... +.......++|||+
T Consensus 203 ADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGDvAGmgADLFESy~~siiaamiLg~~~~~~~~~~~~~~~v~~Pl~ 282 (730)
T PLN02277 203 ADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGGTMAKRCKIEDPSGFILFPLV 282 (730)
T ss_pred cccchhhhhhhhcCCCCCCCCCchHHHHHhCCcccccccccchhHHHHHHHHHHHHHHHHHHhhccCcccccccchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999964311 11111245999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccc---ccCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccccchhHHHH
Q 005714 330 ISSIGILVCLITTLFATDIFEVKA---VKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFL 406 (681)
Q Consensus 330 v~a~gil~Siig~~~v~~~~~~~~---~~~~~~aL~~g~~~s~~l~~v~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~f~ 406 (681)
++++||++|++|++++|...++++ ++||+++||+|+|+|++++++.+|++++|++.+. ..+..||++|+
T Consensus 283 i~~~gii~Siig~~~vr~~~~~~~~~~~~~p~~aL~~g~~vs~~l~~v~~~~~~~~~l~~~--------~~~~~~~~~f~ 354 (730)
T PLN02277 283 VHSFDLVVSSIGILSIKGTRDSSVKSPVEDPMAVLQKGYSVTIILAVVTFGASTRWLLYTE--------QAPSAWFNFAL 354 (730)
T ss_pred HHHHHHHHHHHHHheEeccCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cccchHHHHHH
Confidence 999999999999999863111001 2478999999999999999999999999876320 11124689999
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCchhHHHHhhcccCCchhHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH---------
Q 005714 407 CVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFA--------- 477 (681)
Q Consensus 407 ~~~~Gl~~g~lI~~~TeYyTS~~~~PVr~IA~as~tG~ATnII~Gla~Gm~St~~Pvl~I~~ai~~sy~l~--------- 477 (681)
|+++|+++|++|+++||||||++||||||||++|+||||||||+||++||+||+||+++|++++++||+++
T Consensus 355 ~~~~Gl~~g~lI~~iTeYYTs~~y~PV~~IA~aS~tG~ATnII~Gla~Gm~St~~Pvl~I~~ai~~sy~l~~~~~~~~~~ 434 (730)
T PLN02277 355 CGLVGIITAYAFVWISQYYTDYKYEPVRTLALASTTGHGTNIIAGVSLGLESTALPVLVISVAIISAYWLGNTSGLVDEN 434 (730)
T ss_pred HHHHHHHHHHHHHHeeeeeCCCCCCcHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -----HHHHHHHHHHHHhhhhhHhhhhccccccccCCcchhhccCCchHHHHHhhhhhccCcccccccchhhHHHHHHHH
Q 005714 478 -----AMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVS 552 (681)
Q Consensus 478 -----GlyGialAa~GMLst~~i~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDavGNTTaAi~KGfaIGSAaL~a 552 (681)
|+||+|+|++|||||++++|++|+||||+||||||+||++||||||||||+||++||||||++||||||||+|++
T Consensus 435 ~~~~~GlyGialAa~GMLst~g~~la~DayGPIaDNAGGIaEMs~l~~~VR~~TD~LDavGNTTaAi~KGfAIGSAaL~a 514 (730)
T PLN02277 435 GNPTGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQPESVREITDLLDAVGNTTKATTKGFAIGSAALAS 514 (730)
T ss_pred ccccccHHHHHHHHHHHHhhcceeEEeecccCcccCcccHHHHccCCchhhhhccccccccCcchhhcccchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhc------cceeecCChhHHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCC
Q 005714 553 LALFGAFVSRAG------ITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPD 626 (681)
Q Consensus 553 LaLf~ay~~~~~------~~~~~l~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPD 626 (681)
|+||++|+++.+ +..+|+.||+|++|+|+|+|+|||||+++|+||||+|++|||||||||||||||||||+|||
T Consensus 515 laLF~ay~~~~~~~~~~~~~~~~l~~p~Vl~GlliG~mlpflFsal~m~AVg~aA~~mVeEVRRQFreipGi~eG~~kPd 594 (730)
T PLN02277 515 FLLFSAYMDEVSAFAGVPFKEVDIAIPEVFVGGLLGSMLIFLFSAWACAAVGRTAQEVVNEVRRQFAERPGIMDYKEKPD 594 (730)
T ss_pred HHHHHHHHHHhhhhhccccceeeCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCC
Confidence 999999998753 35699999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhhhhchhhHHHHhHHHHHhhh------------hhhHHHHHhhhhhhhhceecC
Q 005714 627 YATCVKISTDASIKEMIPPGALVMLTPLIVGIFF------------GVETLSGVLAGSLVSGVQYRL 681 (681)
Q Consensus 627 Y~~cV~IsT~aAlkeMi~Pgllail~Pi~vG~~~------------G~~al~GlL~G~~~sG~~lAi 681 (681)
|+||||||||+||||||+||+|++++|+++|++| |+++++|+|+|+++||++||+
T Consensus 595 Y~~cV~I~T~aAlreMi~Pgllail~Pi~vg~~~~~~G~~~~~~~~g~~al~GlL~G~~vsGv~lAi 661 (730)
T PLN02277 595 YGRCVAIVASAALREMIKPGALAVISPIVVGLVFRILGYATGQPLLGAKVVAGMLMFATVSGILMAL 661 (730)
T ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhhhhhhccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999984 679999999999999999985
No 4
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=100.00 E-value=8.1e-207 Score=1718.80 Aligned_cols=604 Identities=52% Similarity=0.866 Sum_probs=542.6
Q ss_pred HHHHHHHHHHHHHHhheeccCCCCCCCCCCCCCCCCcchhhhhhcCCCchhhcHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 005714 19 AVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIEEEEGINDQSVVAKCADIQSAISEGATSFLFTEYQYVGV 98 (681)
Q Consensus 19 ~~~~l~~a~~~~~~v~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~m~~Is~~I~eGA~afL~~qyk~i~~ 98 (681)
++++++||+++++||+ |+|+| +++||||+++|||||++||+||||++++
T Consensus 1 ~~~~l~~a~~~~~~v~-------------------------~~~~G------~~~m~~Ia~~I~eGA~aFL~reYk~i~~ 49 (682)
T PF03030_consen 1 AVLGLIFALFLARWVL-------------------------KQDEG------NEKMQEIAAAIQEGAMAFLKREYKTIAI 49 (682)
T ss_dssp -HHHHHHHHHHHHHHH-------------------------TS----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHh-------------------------cCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999874 67888 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccCCCcccccccccccchhhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhhHHHH-hh
Q 005714 99 FMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANARTTLEA-RK 177 (681)
Q Consensus 99 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~laG~iGM~vAt~aN~Rta~aA-~~ 177 (681)
|+++++++|++.+....+ .++++++||++|+++|.+|||+||++|||+|+||+++| ++
T Consensus 50 ~~vi~~~ll~~~~~~~~~---------------------~~~~taiaFliGa~~S~laGyiGM~vAt~aN~Rta~AAr~~ 108 (682)
T PF03030_consen 50 FIVIVAILLFFLLGFLGG---------------------QGWWTAIAFLIGALCSALAGYIGMRVATRANVRTANAARTR 108 (682)
T ss_dssp HHHHHHHHHHHHHHCCCT---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C
T ss_pred HHHHHHHHHHHHHhhccc---------------------hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHhcC
Confidence 999999999887643111 36899999999999999999999999999999999999 49
Q ss_pred CHhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcC-CCchhhHHHHhhhcchhhHHHHHHHhhccccchhhhhcc
Q 005714 178 SVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYG-DDWEGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGA 256 (681)
Q Consensus 178 ~~~~al~vafr~GsVmGl~vvglgLl~l~~~~~~~~~~~~-~~~~~~~~~i~gf~~GaS~iALFaRvGGGIyTKAADVGA 256 (681)
++++||++|||+|+||||+|+|++|++++++|++++..++ .+.++.+++++||+||+|++|||+|+|||||||||||||
T Consensus 109 gl~~AL~vAfrgGaVmGl~vvglgLlgl~~l~~i~~~~~~~~~~~~~~~~l~Gfg~GaS~iALFaRvGGGIyTKAADVGA 188 (682)
T PF03030_consen 109 GLNKALQVAFRGGAVMGLSVVGLGLLGLSILFLIFSAFFGKTNPENAPEALSGFGFGASSIALFARVGGGIYTKAADVGA 188 (682)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T-HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHhhcchHHHHHHHHHHcCceehhHHHHhh
Confidence 9999999999999999999999999999999999876544 344678899999999999999999999999999999999
Q ss_pred cccchhhcCCCCCCCCCcchhhccccccccccccccchhhhhhHHHHHHHHHHHHHhhcCCCcccccchHhHHHHHHHHH
Q 005714 257 DLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGIL 336 (681)
Q Consensus 257 DLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFESy~~si~aamil~~~~~~~~~~~~~~v~~Pl~v~a~gil 336 (681)
|||||||+|||||||||||||||||||||||||||+|||||||+++++++|+|+.........+...+.|||+++++||+
T Consensus 189 DLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADLFESy~~sivaamilg~~~~~~~~~~~~~v~~Pl~i~~~gii 268 (682)
T PF03030_consen 189 DLVGKVEAGIPEDDPRNPAVIADNVGDNVGDVAGMGADLFESYVVSIVAAMILGSTLFGTNGFNFSGVLFPLLIAAVGII 268 (682)
T ss_dssp HHHHHTTS---TT-TT-TTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHTSHHHHTT-HHHHTHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCcccchHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999986432211223379999999999999
Q ss_pred HHHHHHhhhhhhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccccchhHHHHHHHHHHHHHH
Q 005714 337 VCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGL 416 (681)
Q Consensus 337 ~Siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~~l~~v~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~f~~~~~Gl~~g~ 416 (681)
+|++|++++|.. +.++.++|+|+||+|+|++++++++++|++++|++..+. ......||++|+|+++|+++|+
T Consensus 269 ~Siig~~~v~~~-~~~~~~~~~~aL~~g~~vs~~l~~i~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~iGl~~g~ 341 (682)
T PF03030_consen 269 ASIIGIFFVRTK-KGATSKDPMKALRRGYIVSSILSIILFFFLTYWLLGFSF------FGSGISWWGLFGCVLIGLVAGV 341 (682)
T ss_dssp HHHHHHHHHHTT----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSEETT------EEEEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHheeEEEec-CCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------ccCCcchHHHHHHHHHHHHHHH
Confidence 999999998642 333456999999999999999999999999999882211 1234579999999999999999
Q ss_pred HHHHHhhhhccCCCchhHHHHhhcccCCchhHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhh
Q 005714 417 IIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFA-----AMYGIAVAALGMLS 491 (681)
Q Consensus 417 lI~~~TeYyTS~~~~PVr~IA~as~tG~ATnII~Gla~Gm~St~~Pvl~I~~ai~~sy~l~-----GlyGialAa~GMLs 491 (681)
+|+++|||||||+||||||||++|+||||||||+|+++||+||++|+++|++++++||+++ |+||+|+|++||||
T Consensus 342 lI~~~TeYyTs~~~~PVr~IA~as~tG~AtnII~Gla~G~~St~~pvl~i~~~i~~sy~l~~~~~~GlyGiaiAa~GMLs 421 (682)
T PF03030_consen 342 LIGFITEYYTSYSYRPVREIAEASETGPATNIISGLAVGMESTAIPVLVIAAAILISYYLGGGSGPGLYGIAIAAVGMLS 421 (682)
T ss_dssp HHHHHHHHHH-TTSHHHHHHHHHGGG-HHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCchHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhhHhhhhccccccccCCcchhhccCCchHHHHHhhhhhccCcccccccchhhHHHHHHHHHHHHHHHHhhh------cc
Q 005714 492 TIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRA------GI 565 (681)
Q Consensus 492 t~~i~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDavGNTTaAi~KGfaIGSAaL~aLaLf~ay~~~~------~~ 565 (681)
|++++|++|+||||+|||||||||+++|||||||||+|||+||||||+|||||||||+|+||+||++|++++ ..
T Consensus 422 t~g~~la~DayGPiaDNAgGIaEMs~l~~~VR~~td~LDa~GNTT~A~~KGfaIgSAaLaal~Lf~a~~~~~~~~~~~~~ 501 (682)
T PF03030_consen 422 TAGIVLAMDAYGPIADNAGGIAEMSGLPEEVREITDALDAVGNTTKAIGKGFAIGSAALAALALFAAYVQEVSLFNGTSI 501 (682)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------T-
T ss_pred HhHHHHHhhccCcccccccchHHHcCCChhhhhhhHHHhhcCchhhhhhcchhhHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 56
Q ss_pred ceeecCChhHHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhhch
Q 005714 566 TTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPP 645 (681)
Q Consensus 566 ~~~~l~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~aAlkeMi~P 645 (681)
..+|+.||+|++|+|+|+|+|||||+++|+||||+|++|||||||||||+|||||||+||||+|||||+||+||||||+|
T Consensus 502 ~~~~l~~p~vl~G~liG~~lpflfsa~~m~aVg~aA~~mV~EvRrQFre~pgi~eg~~~pdy~~cV~I~T~~alkemi~P 581 (682)
T PF03030_consen 502 QSVDLTNPYVLIGLLIGAMLPFLFSALTMKAVGRAAGKMVEEVRRQFREIPGIMEGKAKPDYARCVDISTRAALKEMILP 581 (682)
T ss_dssp S--BTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTTTSS---HHHHHHHHHHHHHHHTHHH
T ss_pred ccCCCCCcccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCChHHHHHHHHHHHHHHHhhh
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhHHHHHhhhhhhHHHHHhhhhhhhhceecC
Q 005714 646 GALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQYRL 681 (681)
Q Consensus 646 gllail~Pi~vG~~~G~~al~GlL~G~~~sG~~lAi 681 (681)
+++++++|+++|++||+++++|+|+|+++||++||+
T Consensus 582 ~ll~v~~Pi~vg~~~g~~al~G~L~g~~~sG~~~Ai 617 (682)
T PF03030_consen 582 GLLAVLAPIVVGFLLGPEALGGLLMGATVSGILLAI 617 (682)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999985
No 5
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=100.00 E-value=7e-203 Score=1674.28 Aligned_cols=580 Identities=50% Similarity=0.817 Sum_probs=545.8
Q ss_pred hhhhcCCCchhhcHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccCCCcccccccccccchhhh
Q 005714 59 IEEEEGINDQSVVAKCADIQSAISEGATSFLFTEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALAT 138 (681)
Q Consensus 59 ~~~~~g~~~~~~~~~m~~Is~~I~eGA~afL~~qyk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (681)
+|||+| +|+||||+++|||||++||+||||++++|+++++++|+.... .+..
T Consensus 2 ~~~~~G------~~~m~~Ia~~I~eGA~afl~rqyk~i~~~~i~~~~~l~~~~~----------------------~~~~ 53 (666)
T PRK00733 2 LKQPAG------TERMQEIAGAIQEGAMAYLKRQYKTIAIFGVVVAVLLFLPAG----------------------GLFL 53 (666)
T ss_pred CCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------------------hHHH
Confidence 478899 999999999999999999999999999999999998865411 0113
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhhHHHHhhCHhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcCC
Q 005714 139 AAFSTVSFLLGAITSVLSGFLGMKIATYANARTTLEARKSVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGD 218 (681)
Q Consensus 139 ~~~~a~~Fl~Ga~~S~laG~iGM~vAt~aN~Rta~aA~~~~~~al~vafr~GsVmGl~vvglgLl~l~~~~~~~~~~~~~ 218 (681)
++++++||++|+++|.++||+|||+|||+|+|||++||++++++|++|||+|+||||+|++++|+++.++|++|....
T Consensus 54 ~~~~~~~Fl~Ga~~S~laG~iGM~iat~aN~Rta~aA~~~~~~al~vafr~G~vmGl~vvgl~Llgl~~~~~~~~~~~-- 131 (666)
T PRK00733 54 GWLTAVAFLVGAVFSALAGYIGMRVATRANVRTAQAARKGLGKALKVAFRGGAVMGLLVVGLGLLGVAGLYLVFGLGA-- 131 (666)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 579999999999999999999999999999999999999999999999999999999999999999999998876322
Q ss_pred CchhhHHHHhhhcchhhHHHHHHHhhccccchhhhhcccccchhhcCCCCCCCCCcchhhccccccccccccccchhhhh
Q 005714 219 DWEGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGS 298 (681)
Q Consensus 219 ~~~~~~~~i~gf~~GaS~iALFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFES 298 (681)
+..+.+++++||+||+|++|||+|+||||||||||||||||||||+|||||||||||||||||||||||||||+||||||
T Consensus 132 ~~~~~~~~l~gf~~GaS~iAlFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADlfES 211 (666)
T PRK00733 132 NPDDAPDALVGFGFGASLIALFARVGGGIFTKAADVGADLVGKVEAGIPEDDPRNPAVIADNVGDNVGDCAGMGADLFES 211 (666)
T ss_pred cchhhhHHHHHhhhhHHHHHHHHHhcccceecccccchhhhhhhhcCCCCCCCCCcchHHHhhcccchhhccccchHHHH
Confidence 22346789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhcCCCcccccchHhHHHHHHHHHHHHHHHhhhhhhhhcccccCchHHHHHHHHHHHHHHHHHHHH
Q 005714 299 YAESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAI 378 (681)
Q Consensus 299 y~~si~aamil~~~~~~~~~~~~~~v~~Pl~v~a~gil~Siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~~l~~v~~~~ 378 (681)
|+++++++|+++.... ....++..++|||+++++|+++|++|++++ |.++++|++|+||+|+|+|++++++++|+
T Consensus 212 y~~sivaamilg~~~~-~~~~~~~~v~~Pl~i~~~gii~Siig~~~v----~~~~~~~~~~aL~~g~~~s~~l~~v~~~~ 286 (666)
T PRK00733 212 YAVTIVAAMVLGAAAA-DAAFGVAGVLFPLLIAAVGIIASIIGIFFV----RLGKGGNPMKALNRGLIVTAVLSIVLTYF 286 (666)
T ss_pred HHHHHHHHHHHhhhcc-ccccchhHHHHHHHHHHHHHHHHHHHHeeE----EeCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997321 122345679999999999999999999996 45666899999999999999999999999
Q ss_pred HHHhhcCccccccccccccccchhHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHHHHhhcccCCchhHHhhhhhhhhh
Q 005714 379 VSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKS 458 (681)
Q Consensus 379 ~~~~~l~~~~~~~~~g~~~~~~~~~~f~~~~~Gl~~g~lI~~~TeYyTS~~~~PVr~IA~as~tG~ATnII~Gla~Gm~S 458 (681)
+++|++|... ....||++|+|+++|+++|++|+++||||||++|||||+||++|+||||||||+|+++||+|
T Consensus 287 ~~~~~l~~~~--------~~~~~~~~f~~~~iGlv~g~li~~iTeYyTs~~~~PVr~IA~as~tG~aTnIi~Gla~Gm~S 358 (666)
T PRK00733 287 ATYWLLGDGA--------DGFTWLNLFGAVLIGLVVGALIGLITEYYTSTEYRPVKEIAEASRTGPATNIISGLAVGMES 358 (666)
T ss_pred HHHHHhcccc--------cccccHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHhCcCchHHHHHHHHHHHHH
Confidence 9999997521 12458899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhHhhhhccccccccCCcchhhccCCchHHHHHhhhhhccCc
Q 005714 459 VIIPIFAIAVSIFVSFSF----AAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGN 534 (681)
Q Consensus 459 t~~Pvl~I~~ai~~sy~l----~GlyGialAa~GMLst~~i~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDavGN 534 (681)
|++|+++|++++++||++ +|+||+++|++|||||+++++++|+||||+||||||+||+++|||||+|||+||++||
T Consensus 359 t~~pvl~i~~ai~~sy~l~~~~~GlyGia~Aa~GMLst~g~~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDavGN 438 (666)
T PRK00733 359 TALPVLVIVAAILGAYLLGMAGAGLYGIALAAVGMLSTAGIIVAVDAYGPITDNAGGIAEMAGLPPEVRKITDALDAVGN 438 (666)
T ss_pred HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHhHHHHhhheeeccccCccchHHHcCCChhHhhhChHhHhccc
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHhhh-------ccceeecCChhHHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHH
Q 005714 535 TTAAIGKGFAIGSAALVSLALFGAFVSRA-------GITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEE 607 (681)
Q Consensus 535 TTaAi~KGfaIGSAaL~aLaLf~ay~~~~-------~~~~~~l~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~E 607 (681)
||||++||||||||+|+||+||++|+++. +...+|+.||+|++|+|+|+|+|||||+++|+||||+|++||||
T Consensus 439 TT~A~~KGfaIGSAaLaal~Lf~ay~~~~~~~~~~~~~~~~~l~~p~vl~GlliG~~lpflFs~l~m~AVg~aA~~mV~E 518 (666)
T PRK00733 439 TTKAVTKGFAIGSAALAALALFAAYIDELAGLLGGGGILSLDLSNPYVLVGLLIGGMLPFLFSALAMTAVGRAAGAMVEE 518 (666)
T ss_pred chhHhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccceeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999987 56679999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhhchhhHHHHhHHHHHhhhhhhHHHHHhhhhhhhhceecC
Q 005714 608 VRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQYRL 681 (681)
Q Consensus 608 VRRQFreipGi~eg~~kPDY~~cV~IsT~aAlkeMi~Pgllail~Pi~vG~~~G~~al~GlL~G~~~sG~~lAi 681 (681)
|||||||+||||||++||||+||||||||+||||||+|+++++++|+++|+++|+++++|+|+|+++||++||+
T Consensus 519 VRrQFre~pGi~eg~~kPdY~~cV~I~T~~AlkeMi~P~ll~v~~Pi~vG~~lG~~al~G~L~G~~vsG~~lAi 592 (666)
T PRK00733 519 VRRQFREIPGIMEGTAKPDYARCVDISTKAALKEMILPGLLAVLAPIAVGFLLGPEALGGLLAGAIVTGLLLAI 592 (666)
T ss_pred HHHHHhcCcccccCCCCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985
No 6
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=100.00 E-value=1.5e-200 Score=1596.99 Aligned_cols=607 Identities=45% Similarity=0.738 Sum_probs=565.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhheeccCCCCCCCCCCCCCCCCcchhhhhhcCCCchhhcHHHHHHHHHHHHhhhhhhh
Q 005714 11 TEILVPVCAVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIEEEEGINDQSVVAKCADIQSAISEGATSFLF 90 (681)
Q Consensus 11 ~~~~~~~~~~~~l~~a~~~~~~v~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~m~~Is~~I~eGA~afL~ 90 (681)
..++.++|++++++||.|.++|| +++|+| +||||||+.+|||||++||+
T Consensus 5 ~~~l~i~~gl~sv~~A~~~~~sV-------------------------l~~~~G------n~rm~eIa~aIreGA~ayL~ 53 (703)
T COG3808 5 VLYLAIACGLLSVLYAAWAAKSV-------------------------LRADAG------NERMKEIAAAIREGAMAYLA 53 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------------------HhccCC------cHHHHHHHHHHHHhHHHHHH
Confidence 45778899999999999999976 478899 99999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhcccccccCCCcccccccccccchhhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHh
Q 005714 91 TEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANAR 170 (681)
Q Consensus 91 ~qyk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~laG~iGM~vAt~aN~R 170 (681)
||||+|+++.+++++++.+++. .|.++++|++|++.|..+||+||+++||+|+|
T Consensus 54 rqy~tiavv~ivva~ll~~~l~--------------------------~~~ta~~Fl~GAv~S~~AG~~GM~vstrAN~R 107 (703)
T COG3808 54 RQYKTIAVVGIVVAILLAWFLL--------------------------SWLTAIGFLLGAVLSAAAGFAGMHVSTRANVR 107 (703)
T ss_pred hhhhHHHHHHHHHHHHHHHHHh--------------------------hhHHHHHHHHHHHHHhhhcccceeeeehhhhH
Confidence 9999999999999988877642 36899999999999999999999999999999
Q ss_pred hHHHHhhCHhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcC--CCchhhHHHHhhhcchhhHHHHHHHhhcccc
Q 005714 171 TTLEARKSVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYG--DDWEGLFEAITGYGLGGSSMALFGRVGGGIY 248 (681)
Q Consensus 171 ta~aA~~~~~~al~vafr~GsVmGl~vvglgLl~l~~~~~~~~~~~~--~~~~~~~~~i~gf~~GaS~iALFaRvGGGIy 248 (681)
|||||++++.++|++|||+|+||||+|+|++||++++.|+++..+.+ ++.+.....+.||+||||++++|+|+|||||
T Consensus 108 tAqAAs~~l~~al~vaf~sGaV~Gl~VaGlaLlg~s~~ylv~~~~~g~~~~~~~~i~~lv~~gfGaSlIslFaRvGGGIf 187 (703)
T COG3808 108 TAQAASTGLGKALDVAFKSGAVMGLSVAGLALLGLSLYYLVLTSVLGHEPNLRIVIDSLVGLGFGASLISLFARVGGGIF 187 (703)
T ss_pred HHHHHHhhhhhhhhhhcccCcchhhHHHHHHHHHHHhhhheeecccCCCcccchhhhhhhhhccchHHHHHHHHhcCcee
Confidence 99999999999999999999999999999999999999988865443 2224456789999999999999999999999
Q ss_pred chhhhhcccccchhhcCCCCCCCCCcchhhccccccccccccccchhhhhhHHHHHHHHHHHHHhhcCCCcccccchHhH
Q 005714 249 TKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTSMLYPL 328 (681)
Q Consensus 249 TKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFESy~~si~aamil~~~~~~~~~~~~~~v~~Pl 328 (681)
||+||||+|||||||+||||||||||+||||||||||||||||+|||||||+++++|+|+|++....+.+.-...++|||
T Consensus 188 TKaADvgaDLVGKVEagIPEDDPRNpatIADNVGDNVGD~AGM~ADLfEsYvvtvvAtm~Laai~f~~~~~~~~~ilyPl 267 (703)
T COG3808 188 TKAADVGADLVGKVEAGIPEDDPRNPATIADNVGDNVGDCAGMAADLFESYVVTVVATMVLAAIFFLGTETIEAVILYPL 267 (703)
T ss_pred cchhhcccccccccccCCCCCCCCCccccccccCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999876433222223588999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccccchhHHHHHH
Q 005714 329 LISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCV 408 (681)
Q Consensus 329 ~v~a~gil~Siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~~l~~v~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~f~~~ 408 (681)
.+.+++|++|++|+||+ |.+++++++.+|++++|.+.+++++.+++.++.++..+. .+ -.+..+..+++|+|.
T Consensus 268 ~i~a~~i~~Si~gtffV----k~~~~~~i~~al~~gl~~t~~Lsvv~~~~~t~~l~g~~~--~~-v~g~~~~~~~lf~~~ 340 (703)
T COG3808 268 AICAVGIITSIIGTFFV----KLGKSGSIMGALYKGLIATGILSVVALAFVTSFLLGGTI--GT-VAGMSIGAINLFFCG 340 (703)
T ss_pred HHHHHHHHHHHHhheEE----EeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cc-cccccccchhhHHHH
Confidence 99999999999999996 577889999999999999999999999999998874221 00 012334567899999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCchhHHHHhhcccCCchhHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005714 409 AVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALG 488 (681)
Q Consensus 409 ~~Gl~~g~lI~~~TeYyTS~~~~PVr~IA~as~tG~ATnII~Gla~Gm~St~~Pvl~I~~ai~~sy~l~GlyGialAa~G 488 (681)
++|++++.+|+++||||||++|||||+|||+|.|||+||||+|+++|||||++|.++|.++|+.+|+++|+||+++|++|
T Consensus 341 ~~Glv~~~lIv~iTeyYT~t~~rPv~~ia~as~tG~~tnii~GlavgleSt~~P~iviv~gIi~~~~~~GLyG~AIAa~~ 420 (703)
T COG3808 341 VIGLVVTALIVVITEYYTSTNYRPVNSIAQASVTGHGTNIIQGLAVGLESTALPAIVIVIGIIITYQLAGLYGTAIAAVG 420 (703)
T ss_pred HHHHHHHHHheeeeeeeccCCcchHHHHHHhhccCcchhhhhhhhhhhhhccccHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHhhhhccccccccCCcchhhccCCchHHHHHhhhhhccCcccccccchhhHHHHHHHHHHHHHHHHhhhc----
Q 005714 489 MLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAG---- 564 (681)
Q Consensus 489 MLst~~i~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDavGNTTaAi~KGfaIGSAaL~aLaLf~ay~~~~~---- 564 (681)
||++++++++.|+|||++||||||+||++||||||++||+||++||||||+|||||||||+|+||+||++|..+..
T Consensus 421 ML~~agmiva~DayGPVtDNAGGIaEMa~LppEVR~~TD~LDAVGNTTkAvtKGyAIGSA~l~AL~LFAaY~~~~~~~a~ 500 (703)
T COG3808 421 MLSTAGMIVALDAYGPVTDNAGGIAEMAGLPPEVRKITDALDAVGNTTKAVTKGYAIGSAALGALVLFAAYSFDLKYFAA 500 (703)
T ss_pred HHHHhheEEEeeccCCcccCccchHHHcCCCHHHHHhhHHHHhccchhhhhhcccchhHHHHHHHHHHHHHHHHhhhHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred ------------cceeecCChhHHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHH
Q 005714 565 ------------ITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVK 632 (681)
Q Consensus 565 ------------~~~~~l~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~ 632 (681)
...+|+.||+|++|+++|+++||+||+++|.||||+|++|||||||||||+|||||||+||||+||||
T Consensus 501 ~g~~~~~~~~~~~~~~dl~np~VvaGl~~G~~lpylFs~~tmtAVgrAA~~vV~EVRRQfRE~PGimegk~kPdY~R~Vd 580 (703)
T COG3808 501 NGKPYPYFADMGALSLDLSNPYVVAGLLLGGLLPYLFSGITMTAVGRAAMEVVEEVRRQFREIPGIMEGKAKPDYGRCVD 580 (703)
T ss_pred cCCCCcccccccceeeecCChHHHHHHHHhhHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhCCccccCCcCCchhHHHH
Confidence 12499999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhchhhHHHHhHHHHHhhhhhhHHHHHhhhhhhhhceecC
Q 005714 633 ISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQYRL 681 (681)
Q Consensus 633 IsT~aAlkeMi~Pgllail~Pi~vG~~~G~~al~GlL~G~~~sG~~lAi 681 (681)
|+||+|||||+.|++++|++|+++|+++|+++|+|+|+|.+++|+++||
T Consensus 581 i~T~aAl~eMi~P~llavl~Plvvgli~G~~aLgg~L~G~iv~G~~~Ai 629 (703)
T COG3808 581 ILTKAALKEMIIPGLLAVLAPLVVGLILGFAALGGLLLGVIVNGLFVAI 629 (703)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999999986
No 7
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=77.61 E-value=57 Score=38.03 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=42.0
Q ss_pred ccccchhhhhcccccchhhcCCCCCCCCC-cchhhccccccccccccccchhhhhhHHHHHHHHHHHHHhhcCCCccccc
Q 005714 245 GGIYTKAADVGADLVGKVERNIPEDDPRN-PAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHEFTS 323 (681)
Q Consensus 245 GGIyTKAADVGADLVGKVEagIPEDDPRN-PavIADnVGDNVGD~AGmgADLFESy~~si~aamil~~~~~~~~~~~~~~ 323 (681)
|++=++..-+..||- ||||||- ++==-=-.|+|+ +++.+.++.+.... +..
T Consensus 132 Gl~K~NiS~llg~ly-------~~~DprrD~gFt~fY~~iNi---------------Gsl~~p~i~~~~~~------~~g 183 (498)
T COG3104 132 GLFKPNISSLLGELY-------PKDDPRRDGGFTLFYMGINI---------------GSLIAPIITGLLAI------NYG 183 (498)
T ss_pred ccccccHHHHHHHhc-------CCCCcccCCCccEEEEEeeh---------------HHHHHHHHHHHHHH------hhC
Confidence 556667777777774 9999992 111011224553 34455555444321 111
Q ss_pred chHhHHHHHHHHHHHHHHHhhhhhhh
Q 005714 324 MLYPLLISSIGILVCLITTLFATDIF 349 (681)
Q Consensus 324 v~~Pl~v~a~gil~Siig~~~v~~~~ 349 (681)
-..-+-++++|+..+++-..+.|+.+
T Consensus 184 ~~~gF~~aavGm~~gl~~f~~~~r~~ 209 (498)
T COG3104 184 WHVGFGLAAVGMIIGLVIFLLGRRHV 209 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchh
Confidence 12234567788877777776666544
No 8
>PF03030 H_PPase: Inorganic H+ pyrophosphatase; InterPro: IPR004131 Two types of proteins that hydrolyse inorganic pyrophosphate (PPi), very different in both amino acid sequence and structure, have been characterised to date: soluble and membrane-bound proton-pumping pyrophosphatases (sPPases and H(+)-PPases, respectively). sPPases are ubiquitous proteins that hydrolyse PPi to release heat, whereas H+-PPases, so far unidentified in animal and fungal cells, couple the energy of PPi hydrolysis to proton movement across biological membranes [, ]. The latter type is represented by this group of proteins. H+-PPases (3.6.1.1 from EC) are also called vacuolar-type inorganic pyrophosphatases (V-PPase) or pyrophosphate-energised vacuolar membrane proton pumps []. In plants, vacuoles contain two enzymes for acidifying the interior of the vacuole, the V-ATPase and the V-PPase (V is for vacuolar) []. Two distinct biochemical subclasses of H+-PPases have been characterised to date: K+-stimulated and K+-insensitive [, ]. For additional information please see [, ].; GO: 0004427 inorganic diphosphatase activity, 0009678 hydrogen-translocating pyrophosphatase activity, 0015992 proton transport, 0016020 membrane; PDB: 4A01_A.
Probab=75.78 E-value=40 Score=40.70 Aligned_cols=69 Identities=26% Similarity=0.328 Sum_probs=48.4
Q ss_pred cCChhHHHHHHhhhhHHHHHHhHhHHHHHHH---HHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHH-HHhhhhch
Q 005714 570 VLTPKVFIGLIVGAMLPYWFSAMTMKSVGSA---ALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDA-SIKEMIPP 645 (681)
Q Consensus 570 l~~p~Vl~GlliG~~lpflFsal~m~aVg~a---A~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~a-AlkeMi~P 645 (681)
+..|+.+.|+|+|+.+-=++-++.|.-.|-| |.|.||+- -..||..|-|+.+|-==|-. =+|..--|
T Consensus 595 ~~g~~al~G~L~g~~~sG~~~Ai~m~n~GGAWDNAKKyIE~g---------~~ggKgS~aHkAaVvGDTVGDP~KDTaGP 665 (682)
T PF03030_consen 595 LLGPEALGGLLMGATVSGILLAIFMANAGGAWDNAKKYIEQG---------NLGGKGSEAHKAAVVGDTVGDPFKDTAGP 665 (682)
T ss_dssp HT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------SHHTTSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhcc---------CcCCCCChhhCCcccCCCCCCCccccCcc
Confidence 4688999999999999999999999988854 67777743 34478888888887544433 24555555
Q ss_pred hh
Q 005714 646 GA 647 (681)
Q Consensus 646 gl 647 (681)
.+
T Consensus 666 sl 667 (682)
T PF03030_consen 666 SL 667 (682)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 9
>COG1174 OpuBB ABC-type proline/glycine betaine transport systems, permease component [Amino acid transport and metabolism]
Probab=54.19 E-value=31 Score=36.16 Aligned_cols=50 Identities=22% Similarity=0.305 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhcccc--ccccCCcchhhccCCchHHHH
Q 005714 458 SVIIPIFAIAVSIFVSFSFAAMYGIAVAALGMLSTIATGLAIDAYG--PISDNAGGIAEMAGMSHRIRE 524 (681)
Q Consensus 458 St~~Pvl~I~~ai~~sy~l~GlyGialAa~GMLst~~i~la~DayG--PIaDNAgGIaEMs~l~~~VR~ 524 (681)
.|++|+.++++.+- ++| +...+..++.=.|+ ||.-| -.+-+.+.||+++|
T Consensus 71 qTiPslAllallip-------~~G--------iG~~PAiiAL~lYsLLPIvrN--T~~GL~~V~~~v~E 122 (221)
T COG1174 71 QTIPSLALLALLIP-------VLG--------IGLTPAIIALFLYSLLPIVRN--TYTGLASVPPSVIE 122 (221)
T ss_pred hhchHHHHHHHHHH-------Hhc--------CCccHHHHHHHHHHHhHHHHH--HHHHHhcCCHHHHH
Confidence 36677666655553 222 44555555555565 77766 34556677888877
No 10
>PRK11677 hypothetical protein; Provisional
Probab=49.90 E-value=21 Score=34.70 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccCCCchhHHHH
Q 005714 405 FLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVA 437 (681)
Q Consensus 405 f~~~~~Gl~~g~lI~~~TeYyTS~~~~PVr~IA 437 (681)
|..+++|+++|++||++.-.||+.+.+--+++-
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~~~~q~~le 35 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQ 35 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHHHHHH
Confidence 456779999999999999999987765544444
No 11
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=48.29 E-value=1.7e+02 Score=36.39 Aligned_cols=92 Identities=21% Similarity=0.324 Sum_probs=50.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhhhhHhhhhccccccccCCcchhhccCCchHHHHHhhhhh
Q 005714 457 KSVIIPIFAIAVSIFVSFSFAAMYGIA------VAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALD 530 (681)
Q Consensus 457 ~St~~Pvl~I~~ai~~sy~l~GlyGia------lAa~GMLst~~i~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LD 530 (681)
..+++|++.+.+++..++.+.+++|.. ..+..++..+.+.+++| + +|-=++..-||.|+--|+-|
T Consensus 198 ~~~llpl~~i~lsi~~~~g~~~~lg~~~~~~l~~~~~~~l~~l~lGl~vD-------y--~I~lv~r~~ee~~~g~~~~~ 268 (910)
T TIGR00833 198 ITMLVPLVSVGFSVVVAQGIVSLLGIPGLIGVNAQTTVLLTALVIGAGTD-------Y--AVFLTGRYHEERRKGESLEE 268 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHH-------H--HHHHHHHHHHHHHcCCCHHH
Confidence 345677777777777776665555542 22333333444555555 2 33333444455555556667
Q ss_pred ccCcccccccchhhHHHHHHHHHHHHHHH
Q 005714 531 AAGNTTAAIGKGFAIGSAALVSLALFGAF 559 (681)
Q Consensus 531 avGNTTaAi~KGfaIGSAaL~aLaLf~ay 559 (681)
|+-.+.+-+++ +|-.++++..+=|.++
T Consensus 269 Av~~a~~~~g~--~I~~s~lT~~~gf~~l 295 (910)
T TIGR00833 269 AAAEALRGTGK--AILGSALTVAVAFLAL 295 (910)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 77777666665 4444555554444443
No 12
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=47.22 E-value=2.4e+02 Score=30.52 Aligned_cols=100 Identities=23% Similarity=0.437 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccc--CchHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccccchhHHHHH
Q 005714 330 ISSIGILVCLITTLFATDIFEVKAVK--EIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLC 407 (681)
Q Consensus 330 v~a~gil~Siig~~~v~~~~~~~~~~--~~~~aL~~g~~~s~~l~~v~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~f~~ 407 (681)
+...+++.-++|..+... +.++++ +-.+..++++.. .+++.++..+ |..+|..++ .+.|..++-
T Consensus 105 ~G~~Al~liiiGv~lts~--~~~~~~~~~~~~~~~kgi~~-Ll~stigy~~--Y~~~~~~~~---------~~~~~~~lP 170 (269)
T PF06800_consen 105 IGFLALVLIIIGVILTSY--QDKKSDKSSSKSNMKKGILA-LLISTIGYWI--YSVIPKAFH---------VSGWSAFLP 170 (269)
T ss_pred HHHHHHHHHHHHHHHhcc--ccccccccccccchhhHHHH-HHHHHHHHHH--HHHHHHhcC---------CChhHhHHH
Confidence 344456666777776432 222222 224567777774 6666665433 334454322 346888888
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCchhHHHHhhcccCCchhHHhhhhhh
Q 005714 408 VAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALG 455 (681)
Q Consensus 408 ~~~Gl~~g~lI~~~TeYyTS~~~~PVr~IA~as~tG~ATnII~Gla~G 455 (681)
=.+|++.+.++-..-+ ++|.++ + -+.-|++.|+-.+
T Consensus 171 qaiGm~i~a~i~~~~~------~~~~~~--k----~~~~nil~G~~w~ 206 (269)
T PF06800_consen 171 QAIGMLIGAFIFNLFS------KKPFFE--K----KSWKNILTGLIWG 206 (269)
T ss_pred HHHHHHHHHHHHhhcc------cccccc--c----chHHhhHHHHHHH
Confidence 8899987765533322 233332 1 1357899998654
No 13
>COG3808 OVP1 Inorganic pyrophosphatase [Energy production and conversion]
Probab=44.71 E-value=2.3e+02 Score=33.65 Aligned_cols=132 Identities=23% Similarity=0.285 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccccCch------------HHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccc
Q 005714 329 LISSIGILVCLITTLFATDIFEVKAVKEIE------------PSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQ 396 (681)
Q Consensus 329 ~v~a~gil~Siig~~~v~~~~~~~~~~~~~------------~aL~~g~~~s~~l~~v~~~~~~~~~l~~~~~~~~~g~~ 396 (681)
+.-..|+++-+...+..|...|....++-+ .=|+||+-...++.++..+.+.|++.
T Consensus 8 l~i~~gl~sv~~A~~~~~sVl~~~~Gn~rm~eIa~aIreGA~ayL~rqy~tiavv~ivva~ll~~~l~------------ 75 (703)
T COG3808 8 LAIACGLLSVLYAAWAAKSVLRADAGNERMKEIAAAIREGAMAYLARQYKTIAVVGIVVAILLAWFLL------------ 75 (703)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHHHHHHHh------------
Confidence 334456666666666655444433333222 24678888777777777666665532
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHHHHhhcccCCchhHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 005714 397 KVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSF 476 (681)
Q Consensus 397 ~~~~~~~~f~~~~~Gl~~g~lI~~~TeYyTS~~~~PVr~IA~as~tG~ATnII~Gla~Gm~St~~Pvl~I~~ai~~sy~l 476 (681)
.|.--.|.++|-+.+..-|++--+ .|. |-=-+.||++++| +=.+| -++|.-
T Consensus 76 ----~~~ta~~Fl~GAv~S~~AG~~GM~-vst--rAN~RtAqAAs~~----l~~al------------------~vaf~s 126 (703)
T COG3808 76 ----SWLTAIGFLLGAVLSAAAGFAGMH-VST--RANVRTAQAASTG----LGKAL------------------DVAFKS 126 (703)
T ss_pred ----hhHHHHHHHHHHHHHhhhccccee-eee--hhhhHHHHHHHhh----hhhhh------------------hhhccc
Confidence 244445566666655555555433 232 3334567766654 22233 344555
Q ss_pred HHHHHHHHHHHHHhhhhhHhhhhcc
Q 005714 477 AAMYGIAVAALGMLSTIATGLAIDA 501 (681)
Q Consensus 477 ~GlyGialAa~GMLst~~i~la~Da 501 (681)
+.+.|...+.+++|....+-+-.-.
T Consensus 127 GaV~Gl~VaGlaLlg~s~~ylv~~~ 151 (703)
T COG3808 127 GAVMGLSVAGLALLGLSLYYLVLTS 151 (703)
T ss_pred CcchhhHHHHHHHHHHHhhhheeec
Confidence 6667777777777766555444333
No 14
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=38.80 E-value=1.1e+02 Score=32.41 Aligned_cols=92 Identities=25% Similarity=0.437 Sum_probs=59.7
Q ss_pred eeecCChhHHH---HHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhh
Q 005714 567 TVDVLTPKVFI---GLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMI 643 (681)
Q Consensus 567 ~~~l~~p~Vl~---GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~aAlkeMi 643 (681)
.....||.-++ |.++| =+|++++.+..+.-+|+|++=+|+...+.--+. +++.++-..|.|+|+-+
T Consensus 117 ~~~~~~~r~~IPi~GMiiG---------Nsm~a~slal~r~~~~l~~~~~~ie~~LalGat--~~eA~~~~~r~ai~~al 185 (250)
T PF03649_consen 117 GAPWFDPRYLIPIAGMIIG---------NSMNAVSLALERFYSELRERRDEIEALLALGAT--PREAVRPFIRRAIRAAL 185 (250)
T ss_pred CCCCCChhHHHHHHHHHHh---------hHHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHh
Confidence 45577887765 55554 467999999999999999987776555543333 34556666678888877
Q ss_pred chhhHHHHhHHHHHhhhhhhHHHHHhhhhhhhh
Q 005714 644 PPGALVMLTPLIVGIFFGVETLSGVLAGSLVSG 676 (681)
Q Consensus 644 ~Pgllail~Pi~vG~~~G~~al~GlL~G~~~sG 676 (681)
.|.+=.+-+ +|+. .+=|+..|.+.+|
T Consensus 186 ~P~i~~m~~---vGlV----slPGmMtG~IL~G 211 (250)
T PF03649_consen 186 IPTINSMKT---VGLV----SLPGMMTGQILGG 211 (250)
T ss_pred HhHHHhhhh---hhee----echHHHHHHHHcC
Confidence 777665543 3433 3344444544444
No 15
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=37.88 E-value=1.4e+02 Score=32.88 Aligned_cols=114 Identities=18% Similarity=0.228 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhc----c-c-eeecC--ChhHHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhcc
Q 005714 543 FAIGSAALVSLALFGAFVSRAG----I-T-TVDVL--TPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNT 614 (681)
Q Consensus 543 faIGSAaL~aLaLf~ay~~~~~----~-~-~~~l~--~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFre 614 (681)
+=-+|+.+.-...++.+..... . . -.+.. ++....+..+=..+.++||-.-. .++-...|+-|+.|+|=.-
T Consensus 202 iifa~sll~~p~~i~~~l~~~~~~~~~~~~i~~~~~~~~~~~~y~~~~~~li~~Fs~~~~-~~~~~p~~iA~~lkk~g~~ 280 (346)
T PF00344_consen 202 IIFASSLLSLPQYIAQFLNSQFPNNWLVSGIAYYFSQNLNSPLYIIFYLILIILFSYFFS-FININPKDIAENLKKSGDY 280 (346)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCSCCSCCSSCCHHHTSSSHHHHHHHHHHHHHHHHHHHHHH-TSSSHHHHHHHHCHCTTSS
T ss_pred HHHHHHHHHHHHHHHHhccCCCccccHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHh-hccCCHHHHHHHHHHhCCE
Confidence 4445666666666666554321 1 1 13345 78899999999999999998866 8888888888888888888
Q ss_pred CCCCCCCCCCCChhhHHHHHHHHHHhhhhchhhHHHHhHHHHHhhh
Q 005714 615 IPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFF 660 (681)
Q Consensus 615 ipGi~eg~~kPDY~~cV~IsT~aAlkeMi~Pgllail~Pi~vG~~~ 660 (681)
|||+..|++..+| --++..+.+.=.-+.-++++ ..|.+.+..+
T Consensus 281 I~GirpG~~T~~y--L~~~i~~~~~~G~~~l~~ia-~~p~~~~~~~ 323 (346)
T PF00344_consen 281 IPGIRPGKPTEKY--LNKVIPRLSFLGALFLALIA-VLPLIFGLFG 323 (346)
T ss_dssp SSTCTTSCHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHTTSS
T ss_pred eCCCCCChhHHHH--HHHHHHHHhhhhHHHHHHHH-HHHHHHHHHc
Confidence 9999888555555 11233444444444555555 3577777665
No 16
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=37.21 E-value=3.5e+02 Score=25.20 Aligned_cols=102 Identities=20% Similarity=0.368 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHHHhhcCCCcccccchHhHHHHHHHHHHHHHHHhhhhhhhhcccccCchHHHHHHHHHHHHHHHHHHH
Q 005714 298 SYAESSCAALVVASISSFGINHEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIA 377 (681)
Q Consensus 298 Sy~~si~aamil~~~~~~~~~~~~~~v~~Pl~v~a~gil~Siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~~l~~v~~~ 377 (681)
+|..+.+..++++....+ .+.+.-.+|..+..+.++++.+|-+..-+ |.+ +|-+-.|..+..+. .+..+
T Consensus 14 ~~~~tl~~~l~~a~ll~~---~~~~e~~~~~~~~~i~~ls~~~GG~~a~~--~~~-----~kG~l~G~~~Gl~y-~~il~ 82 (116)
T PF12670_consen 14 AYIITLILLLLLALLLYF---TSLSESILPWLVVIIYILSVFIGGFYAGR--KAG-----SKGWLHGLLVGLLY-FLILL 82 (116)
T ss_pred HHHHHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHc-----cchHHHHHHHHHHH-HHHHH
Confidence 344444444444433322 12344568888888889999999887632 111 24555555543333 23334
Q ss_pred HHHHhhcCccccccccccccccchhHHHHHHHHHHHHHHH
Q 005714 378 IVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLI 417 (681)
Q Consensus 378 ~~~~~~l~~~~~~~~~g~~~~~~~~~~f~~~~~Gl~~g~l 417 (681)
.++....++... ......+...|...|.+.|++
T Consensus 83 lis~~~~~~~~~-------~~~~~~~~~~~~~~G~lGG~l 115 (116)
T PF12670_consen 83 LISFLFGPGPFS-------GSSQLLKLLLCLLAGALGGML 115 (116)
T ss_pred HHHHHHccCcch-------HHHHHHHHHHHHHHHHHHhhc
Confidence 455554433111 011234677888888877753
No 17
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=34.98 E-value=4.6e+02 Score=25.90 Aligned_cols=19 Identities=37% Similarity=0.553 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 005714 193 MGFLLAANGLLVLFIAINL 211 (681)
Q Consensus 193 mGl~vvglgLl~l~~~~~~ 211 (681)
.|+.+.++|++...+.+.+
T Consensus 142 ~~i~~~glGlll~~~~~~l 160 (181)
T PF08006_consen 142 FGIGLFGLGLLLIVITFYL 160 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4666677777655554444
No 18
>COG4177 LivM ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=33.65 E-value=1.1e+02 Score=33.71 Aligned_cols=49 Identities=31% Similarity=0.350 Sum_probs=37.9
Q ss_pred hHHHHHhhhhhccC-cccccccchhhHHHHHHHHHH--HHHHHHhhhccceee
Q 005714 520 HRIRERTDALDAAG-NTTAAIGKGFAIGSAALVSLA--LFGAFVSRAGITTVD 569 (681)
Q Consensus 520 ~~VR~~tD~LDavG-NTTaAi~KGfaIGSAaL~aLa--Lf~ay~~~~~~~~~~ 569 (681)
+-+||=.++-.+.| |+++-..+-|+| ||++++++ |++.|.+.+.-+.++
T Consensus 187 ~AiRedE~~a~alG~n~~~~Kl~aF~i-sa~~AGiAGaL~a~~~~~v~p~~f~ 238 (314)
T COG4177 187 RAIREDEIAARALGINVTRYKLLAFVI-SAAIAGIAGALYALYLGFVSPESFS 238 (314)
T ss_pred hhhccCHHHHHHcCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHhceeChhhcc
Confidence 45677777788999 999999999998 56778885 899888766544444
No 19
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=33.46 E-value=98 Score=35.81 Aligned_cols=70 Identities=19% Similarity=0.141 Sum_probs=52.3
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhhchhhHHHHhHHHHH
Q 005714 585 LPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVG 657 (681)
Q Consensus 585 lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~aAlkeMi~Pgllail~Pi~vG 657 (681)
+-|+|+.+.++.=|-...|+-|..|+|=..|||+.+| ||=-+.+-+..++.+.=.=+.-++++++ |-++|
T Consensus 372 fs~ffs~~~v~~sg~~p~~iA~~lkk~g~~IpG~RpG--k~t~~yL~k~i~r~t~~Ga~~l~~ia~l-p~~~~ 441 (474)
T PTZ00219 372 SCALFSKTWIEVSGSSAKDVAKQLKDQGMGMVGYRDS--SSMVRVLNRYIPTAASFGGMCIGALTIL-ADFLG 441 (474)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCCccCcCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4567777777777788889999999998899999888 4444445566677777777777777764 55555
No 20
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=33.11 E-value=2.6e+02 Score=33.20 Aligned_cols=88 Identities=24% Similarity=0.359 Sum_probs=46.2
Q ss_pred cccccccCCcchhhccCCchHH-HHHhhhhhccC---cccccccchhhHHHHHHHHHHHHHHHHhhhccceeecCChhHH
Q 005714 501 AYGPISDNAGGIAEMAGMSHRI-RERTDALDAAG---NTTAAIGKGFAIGSAALVSLALFGAFVSRAGITTVDVLTPKVF 576 (681)
Q Consensus 501 ayGPIaDNAgGIaEMs~l~~~V-R~~tD~LDavG---NTTaAi~KGfaIGSAaL~aLaLf~ay~~~~~~~~~~l~~p~Vl 576 (681)
+..||.|+ |-| -|-++. .-+|+.|+..| ++-+-+++ |=.+..++.++.++- +.
T Consensus 369 am~PiMe~---Vvk--PLme~is~~iT~~L~~~GVdke~Ae~iGs---I~gaI~aAi~mvA~~---------------v~ 425 (593)
T PRK15374 369 ALNPIMEH---VLK--PLMELIGKAITKALEGLGVDKKTAEMAGS---IVGAIVAAIAMVAVI---------------VV 425 (593)
T ss_pred HHHHHHHH---HHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHH---HHHHHHHHHHHHHHH---------------HH
Confidence 55666665 222 111222 34777888888 22222222 334555666655442 23
Q ss_pred HHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhh
Q 005714 577 IGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQF 612 (681)
Q Consensus 577 ~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQF 612 (681)
+|...++.--.+++.+ ++.+|+.-.++++|.-||+
T Consensus 426 ~~~v~k~aa~Kl~~~l-~k~ig~~i~~~~~~~lk~~ 460 (593)
T PRK15374 426 VAVVGKGAAAKLGNAL-SKMMGETIKKLVPNVLKQL 460 (593)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 4433333333455444 4777888877788876665
No 21
>TIGR00245 conserved hypothetical protein TIGR00245.
Probab=31.75 E-value=48 Score=35.20 Aligned_cols=77 Identities=22% Similarity=0.398 Sum_probs=50.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhhchhhHHHHhHHHHHhhhhhhHHHHHhh
Q 005714 591 AMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLA 670 (681)
Q Consensus 591 al~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~aAlkeMi~Pgllail~Pi~vG~~~G~~al~GlL~ 670 (681)
+=+|++++-+..+.-+|+|+|=+|+...+.=-+.| ++.++-..|.|+|.-+.|.+=.+-+ +|+. .+=|+..
T Consensus 129 GNsM~a~sLa~~rl~~~l~~~~~~ie~~LaLGat~--~~A~~~~~r~Ai~aaliP~insm~~---vGlV----~LPGmMt 199 (248)
T TIGR00245 129 GNTMNTISLALNRLISMVKSERDEIQGYLSLGATP--KQAIAPFIRNAIKASLIPTVNSTKT---VGLV----SLPGMMT 199 (248)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCH--HHHHHHHHHHHHHHHhhchHHhcch---hhee----echhHHH
Confidence 34678999999999999999977765554433333 4555666677777777777665543 4443 3445555
Q ss_pred hhhhhh
Q 005714 671 GSLVSG 676 (681)
Q Consensus 671 G~~~sG 676 (681)
|.+.+|
T Consensus 200 GqIL~G 205 (248)
T TIGR00245 200 GQILAG 205 (248)
T ss_pred HHHhcC
Confidence 555555
No 22
>COG4214 XylH ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]
Probab=29.92 E-value=2.6e+02 Score=31.74 Aligned_cols=115 Identities=16% Similarity=0.163 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhh--ccccccc----CCCcccccccccccchhhhhhHHHHH
Q 005714 72 AKCADIQSAISEGATSFLFTEYQYVGVFMIAFAILIFVFLG--SVEGFST----KGQACTYDQQKMCKPALATAAFSTVS 145 (681)
Q Consensus 72 ~~m~~Is~~I~eGA~afL~~qyk~i~~~~~~~~~~l~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~ 145 (681)
+-.|.+--.+--..--|...+||=+-...+++.+++..+.. .+..+.- -.+|.| .-..+..+..+.+...
T Consensus 218 ~~~k~~~~~~~il~~v~~ln~yrGvp~~vlv~~vl~~~~~fvt~rT~fGR~VyAiGGN~e----AA~LSGInv~r~t~~v 293 (394)
T COG4214 218 FVLKLLVIAAIILGLVYVLNSYRGVPNPVLVLLVLLIVFTFVTTRTVFGRRVYAIGGNPE----AARLSGINVERVTLLV 293 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHhhhceeeeEEEEecCCHH----HHHhcCCceeehhHHH
Confidence 34444444444444568888998776666666555543321 1110000 000000 0012223333556677
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHhhHHHHhhCHhHHHHhhccccchh
Q 005714 146 FLLGAITSVLSGFLGMKIATYANARTTLEARKSVGKAFIVAFRSGAVM 193 (681)
Q Consensus 146 Fl~Ga~~S~laG~iGM~vAt~aN~Rta~aA~~~~~~al~vafr~GsVm 193 (681)
|.. +..+|..-|+-.+.|-|+-|-.|-...=-++..-||-||+.|
T Consensus 294 F~~---mGvl~AiAgli~taRL~aatp~AG~g~ELdaIAA~fIGGtSl 338 (394)
T COG4214 294 FVI---MGVLAAIAGLILTARLNAATPSAGTGFELDAIAACFIGGTSL 338 (394)
T ss_pred HHH---HHHHHHHHHHHHHHHhhcCCcCCCcchhHHHHHHHHhccccc
Confidence 754 444555556777888887766554433337888899887765
No 23
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=27.79 E-value=3.7e+02 Score=30.41 Aligned_cols=16 Identities=44% Similarity=1.022 Sum_probs=7.4
Q ss_pred cCChhHHHHHHhhhhH
Q 005714 570 VLTPKVFIGLIVGAML 585 (681)
Q Consensus 570 l~~p~Vl~GlliG~~l 585 (681)
+.-|..++|-.+|..+
T Consensus 321 ~f~P~l~iGa~~G~~~ 336 (418)
T PRK01610 321 VFTPTLFVGLAIGMLY 336 (418)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3444455554444433
No 24
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=27.43 E-value=4.2e+02 Score=31.45 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHhhhhccccccccCCcchhhccCCchHHHHHhhhhhccCcccc
Q 005714 459 VIIPIFAIAVSIFVSFSFAAMYGIAVAALGM-LSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTA 537 (681)
Q Consensus 459 t~~Pvl~I~~ai~~sy~l~GlyGialAa~GM-Lst~~i~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDavGNTTa 537 (681)
+++|++.+.+++..++.+.+++|+-+--+.+ ...+.+.++ .|+ +|--++..-+|.++--|.-+|+-++.+
T Consensus 220 ~~~~l~~~~~~~~~~~g~~~~~g~~l~~~~~~~~~l~lgi~-------vd~--~ihl~~r~~~~~~~g~~~~~ai~~a~~ 290 (719)
T TIGR00921 220 PLLPLVIILFGVAWVLGIMGWLGIPLYATTLLAVPMLIGVG-------IDY--GIQTLNRYEEERDIGRAKGEAIVTAVR 290 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHhhh-------hhh--HHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4566666677776666666666653322221 111112233 344 244444444444444555566667777
Q ss_pred cccchhhHHHHHHHHHHHHHHH
Q 005714 538 AIGKGFAIGSAALVSLALFGAF 559 (681)
Q Consensus 538 Ai~KGfaIGSAaL~aLaLf~ay 559 (681)
-+++... .++++..+=|.++
T Consensus 291 ~~g~~i~--~t~~t~~~gf~~l 310 (719)
T TIGR00921 291 RTGRAVL--IALLTTSAGFAAL 310 (719)
T ss_pred hccHHHH--HHHHHHHHHHHHH
Confidence 7777443 3444444444433
No 25
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=27.35 E-value=47 Score=32.95 Aligned_cols=22 Identities=36% Similarity=0.736 Sum_probs=20.5
Q ss_pred HHHhhhhhHhhhhccccccccC
Q 005714 487 LGMLSTIATGLAIDAYGPISDN 508 (681)
Q Consensus 487 ~GMLst~~i~la~DayGPIaDN 508 (681)
.+||..+....--|+||||.|.
T Consensus 49 ~~mL~lL~TS~lp~S~GpI~~~ 70 (149)
T PF12331_consen 49 ILMLNLLSTSVLPDSFGPITDD 70 (149)
T ss_pred HHHHHHHHhccCCCCcCCCCCC
Confidence 5899999999999999999986
No 26
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.86 E-value=1.5e+02 Score=28.41 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=17.8
Q ss_pred cHHHHHHHHHHHHhhhhh------hhhhhh
Q 005714 71 VAKCADIQSAISEGATSF------LFTEYQ 94 (681)
Q Consensus 71 ~~~m~~Is~~I~eGA~af------L~~qyk 94 (681)
-+..++=++..++||..| |+|+|-
T Consensus 59 L~~L~drad~L~~~as~F~~~A~klkrk~w 88 (116)
T KOG0860|consen 59 LDELDDRADQLQAGASQFEKTAVKLKRKMW 88 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666688899999998 667663
No 27
>PF04911 ATP-synt_J: ATP synthase j chain; InterPro: IPR006995 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit J found in the F0 complex of F-ATPases from fungal mitochondria. This subunit does not appear to display sequence similarity with subunits of F-ATPases found in other organisms []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o)
Probab=25.98 E-value=28 Score=29.09 Aligned_cols=7 Identities=71% Similarity=1.426 Sum_probs=5.9
Q ss_pred CCCCCcc
Q 005714 269 DDPRNPA 275 (681)
Q Consensus 269 DDPRNPa 275 (681)
.|||||-
T Consensus 39 NDPRNP~ 45 (54)
T PF04911_consen 39 NDPRNPR 45 (54)
T ss_pred cCCCChh
Confidence 6999994
No 28
>PF00110 wnt: wnt family; InterPro: IPR005817 Wnt proteins constitute a large family of secreted molecules that are involved in intercellular signalling during development. The name derives from the first 2 members of the family to be discovered: int-1 (mouse) and wingless (Drosophila) []. It is now recognised that Wnt signalling controls many cell fate decisions in a variety of different organisms, including mammals []. Wnt signalling has been implicated in tumourigenesis, early mesodermal patterning of the embryo, morphogenesis of the brain and kidneys, regulation of mammary gland proliferation and Alzheimer's disease [, ]. Wnt-mediated signalling is believed to proceed initially through binding to cell surface receptors of the frizzled family; the signal is subsequently transduced through several cytoplasmic components to B-catenin, which enters the nucleus and activates the transcription of several genes important in development []. Several non-canonical Wnt signalling pathways have also been elucidated that act independently of B-catenin. Canonical and noncanonical Wnt signaling branches are highly interconnected, and cross-regulate each other []. Members of the Wnt gene family are defined by their sequence similarity to mouse Wnt-1 and Wingless in Drosophila. They encode proteins of ~350-400 residues in length, with orthologues identified in several, mostly vertebrate, species. Very little is known about the structure of Wnts as they are notoriously insoluble, but they share the following features characteristics of secretory proteins: a signal peptide, several potential N-glycosylation sites and 22 conserved cysteines [] that are probably involved in disulphide bonds. The Wnt proteins seem to adhere to the plasma membrane of the secreting cells and are therefore likely to signal over only few cell diameters. Fifteen major Wnt gene families have been identified in vertebrates, with multiple subtypes within some classes. In humans, 19 Wnt proteins have been identified that share 27% to 83% amino-acid sequence identity and a conserved pattern of 23 or 24 cysteine residues []. Wnt genes are highly conserved between vertebrate species sharing overall sequence identity and gene structure, and are slightly less conserved between vertebrates and invertebrates.; GO: 0005102 receptor binding, 0007275 multicellular organismal development, 0016055 Wnt receptor signaling pathway, 0005576 extracellular region; PDB: 4F0A_B.
Probab=25.51 E-value=66 Score=35.10 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCC
Q 005714 593 TMKSVGSAALKMVEEVRRQFNTIP 616 (681)
Q Consensus 593 ~m~aVg~aA~~mV~EVRRQFreip 616 (681)
.|.+|.+++..-++|+++|||..+
T Consensus 22 ~m~~i~~G~~~ai~ECq~QF~~~R 45 (310)
T PF00110_consen 22 LMPSIAEGAKMAIEECQHQFRNRR 45 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Confidence 689999999999999999999643
No 29
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=25.08 E-value=1.2e+02 Score=26.23 Aligned_cols=31 Identities=23% Similarity=0.573 Sum_probs=22.9
Q ss_pred HHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCC
Q 005714 575 VFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLM 619 (681)
Q Consensus 575 Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~ 619 (681)
+++++++|+..-|+++- ...++|++|+|-|=
T Consensus 3 iilali~G~~~Gff~ar--------------~~~~k~l~~NPpin 33 (64)
T PF03672_consen 3 IILALIVGAVIGFFIAR--------------KYMEKQLKENPPIN 33 (64)
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHCCCCC
Confidence 56788888888877754 34568899988763
No 30
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=24.69 E-value=5e+02 Score=26.60 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhhhhhHhhhhcc
Q 005714 478 AMYGIAVAALGMLSTIATGLAIDA 501 (681)
Q Consensus 478 GlyGialAa~GMLst~~i~la~Da 501 (681)
.+-|..++-+|+-++.|..++=-.
T Consensus 111 nl~Gmllt~lG~~a~vG~L~ak~l 134 (183)
T PF12263_consen 111 NLVGMLLTLLGAQATVGTLVAKAL 134 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888999999998887765433
No 31
>PRK00733 hppA membrane-bound proton-translocating pyrophosphatase; Validated
Probab=24.32 E-value=4.4e+02 Score=32.15 Aligned_cols=141 Identities=23% Similarity=0.355 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhhHHHHhhC---------------HhHHHHhhccccchhHHHHHHHHHHH
Q 005714 140 AFSTVSFLLGAITSVLSGFLGMKIATYANARTTLEARKS---------------VGKAFIVAFRSGAVMGFLLAANGLLV 204 (681)
Q Consensus 140 ~~~a~~Fl~Ga~~S~laG~iGM~vAt~aN~Rta~aA~~~---------------~~~al~vafr~GsVmGl~vvglgLl~ 204 (681)
+.+.+..++|+..-.+-.-+-|+.-.|+--+..++-||- +.+..+++-| .+.-.|.+-+ ++.
T Consensus 484 p~vl~GlliG~~lpflFs~l~m~AVg~aA~~mV~EVRrQFre~pGi~eg~~kPdY~~cV~I~T~-~AlkeMi~P~--ll~ 560 (666)
T PRK00733 484 PYVLVGLLIGGMLPFLFSALAMTAVGRAAGAMVEEVRRQFREIPGIMEGTAKPDYARCVDISTK-AALKEMILPG--LLA 560 (666)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCChHHHHHHHHH-HHHHhhhhHH--HHH
Confidence 467778888888888877777777777777666666532 3344444432 2333333322 121
Q ss_pred HH---HHHHHHhhhcCCCchhhHHHHhhhcchhhHHHHHHHhhccccchhhhhcccccchhhcCCCC---CCCCCcchhh
Q 005714 205 LF---IAINLFKLYYGDDWEGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPE---DDPRNPAVIA 278 (681)
Q Consensus 205 l~---~~~~~~~~~~~~~~~~~~~~i~gf~~GaS~iALFaRvGGGIyTKAADVGADLVGKVEagIPE---DDPRNPavIA 278 (681)
+. ++-+++ +.+ -+--.+.|.-.-+-+.|+|.--+||-+-+|-.. +|.|-.+ .|.+..+|+.
T Consensus 561 v~~Pi~vG~~l----G~~--al~G~L~G~~vsG~~lAi~m~NaGGAWDNAKKy-------IE~g~~gGKgS~aHkAaVvG 627 (666)
T PRK00733 561 VLAPIAVGFLL----GPE--ALGGLLAGAIVTGLLLAIFMANAGGAWDNAKKY-------IEDGNHGGKGSEAHKAAVVG 627 (666)
T ss_pred HHHHHHHHHHh----hHH--HHHHHHHHHHHHHHHHHHHHcccchhHHHHHHH-------HhcCCCCCCCcHHHhccccC
Confidence 11 111112 111 112233444444567899999999999877654 6665443 4567799999
Q ss_pred ccccccccccccccchhh
Q 005714 279 DNVGDNVGDIAGMGSDLF 296 (681)
Q Consensus 279 DnVGDNVGD~AGmgADLF 296 (681)
|.|||=-=|-+|..-+.-
T Consensus 628 DTVGDPfKDTaGPslnil 645 (666)
T PRK00733 628 DTVGDPFKDTAGPALNPL 645 (666)
T ss_pred CCCCCCccccccchhhHH
Confidence 999999999999987744
No 32
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=23.44 E-value=83 Score=29.44 Aligned_cols=36 Identities=19% Similarity=0.401 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHH-HHHHHHH------HhhhhccCCCchhHHH
Q 005714 401 NWQLFLCVAVGLW-AGLIIGF------VTEYYTSNAYSPVQDV 436 (681)
Q Consensus 401 ~~~~f~~~~~Gl~-~g~lI~~------~TeYyTS~~~~PVr~I 436 (681)
.|.+..+++++.+ .++||.+ .-+|+.||+|+|.+|-
T Consensus 16 sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~~SY~H~rL~e~ 58 (102)
T PF15176_consen 16 SWPFLVGVVVTALVTSLLIALAAKCPVWYKYLASYRHHRLPET 58 (102)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccccccCCcc
Confidence 4666666555544 6777754 5689999999999876
No 33
>TIGR01104 V_PPase vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants.
Probab=22.56 E-value=5e+02 Score=31.84 Aligned_cols=143 Identities=17% Similarity=0.298 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhHhhHHHHhhC---------------HhHHHHhhccccchhHHHHHHHHHHHH
Q 005714 141 FSTVSFLLGAITSVLSGFLGMKIATYANARTTLEARKS---------------VGKAFIVAFRSGAVMGFLLAANGLLVL 205 (681)
Q Consensus 141 ~~a~~Fl~Ga~~S~laG~iGM~vAt~aN~Rta~aA~~~---------------~~~al~vafr~GsVmGl~vvglgLl~l 205 (681)
.+.+..++|+..-.+=.=+.|+-=.|+--|..++-||- +++..+++-| .+.-.|.+-++=....
T Consensus 510 ~vl~GlliG~mlpflFsal~m~AVg~aA~~mV~EVRRQFreipGi~eG~~kPdY~~cV~I~T~-aAlkeMi~Pgll~i~~ 588 (697)
T TIGR01104 510 KVFIGLFVGAMLPYWFSSMTMKSVGRAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTD-ASIKEMIPPGLLVMLT 588 (697)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCCCCcHHHHHHHHH-HHHHhhhhhhHHHHHH
Confidence 34555667776666655556666666666666665532 2234444443 3445554433211111
Q ss_pred HHHHHHHhhhcCCCchhhHHHHhhhcchhhHHHHHHHhhccccchhhhhcccccchhhcC--------CCCCCCCCcchh
Q 005714 206 FIAINLFKLYYGDDWEGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERN--------IPEDDPRNPAVI 277 (681)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~i~gf~~GaS~iALFaRvGGGIyTKAADVGADLVGKVEag--------IPEDDPRNPavI 277 (681)
-++.-++ ++.+ -+--.+.|.-.-+-+.|+|+--+||-+-+|=.. +|.| -+-.|.+..+|+
T Consensus 589 Pi~vG~~---~G~~--al~GlL~G~~vsG~~lAi~m~NaGGAWDNAKKy-------IE~G~~~~~~~ggKGS~aHkAaVv 656 (697)
T TIGR01104 589 PLIVGFL---FGVE--TLSGVLAGVLVSGVQIAISASNTGGAWDNAKKY-------IEAGSEHARSLGPKGSEAHKAAVI 656 (697)
T ss_pred HHHHHHh---ccHH--HHHHHHHHHHHHHHHHHHHHhcCcchHHhHHHH-------HhcCccccccCCCCCcHHhhcccc
Confidence 1111110 1111 011233333334557899999999999877654 6665 355678889999
Q ss_pred hccccccccccccccchhh
Q 005714 278 ADNVGDNVGDIAGMGSDLF 296 (681)
Q Consensus 278 ADnVGDNVGD~AGmgADLF 296 (681)
.|.|||=-=|-+|..-+.-
T Consensus 657 GDTVGDPfKDTaGPslNil 675 (697)
T TIGR01104 657 GDTVGDPLKDTSGPSLNIL 675 (697)
T ss_pred CCCCCCCccccccchHhHH
Confidence 9999999999999987744
No 34
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=22.02 E-value=2.4e+02 Score=24.63 Aligned_cols=40 Identities=15% Similarity=0.356 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHHHhhhh----hhhhhhhHHHHHHHHHHHHHHHH
Q 005714 71 VAKCADIQSAISEGATS----FLFTEYQYVGVFMIAFAILIFVF 110 (681)
Q Consensus 71 ~~~m~~Is~~I~eGA~a----fL~~qyk~i~~~~~~~~~~l~~~ 110 (681)
+++|++-|+..+..|.. +..+.||+..+++.++.+++++.
T Consensus 40 t~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~~i 83 (89)
T PF00957_consen 40 TEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIILII 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHH
Confidence 55666666666655543 55677887777776666655443
No 35
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.86 E-value=1.2e+02 Score=29.76 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCCch
Q 005714 404 LFLCVAVGLWAGLIIGFVTEYYTSNAYSP 432 (681)
Q Consensus 404 ~f~~~~~Gl~~g~lI~~~TeYyTS~~~~P 432 (681)
.|....+|+++|++||++---+|-.++|.
T Consensus 7 ~W~~a~igLvvGi~IG~li~Rlt~~~~k~ 35 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIARLTNRKLKQ 35 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 46678899999999999999999888776
No 36
>COG1269 NtpI Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]
Probab=21.76 E-value=1.4e+03 Score=27.75 Aligned_cols=101 Identities=22% Similarity=0.295 Sum_probs=62.6
Q ss_pred cchHhHHHHH------HHHHHHHHHHhhhhhhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHhhcC----cccccc-
Q 005714 323 SMLYPLLISS------IGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLP----SSFTIY- 391 (681)
Q Consensus 323 ~v~~Pl~v~a------~gil~Siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~~l~~v~~~~~~~~~l~----~~~~~~- 391 (681)
..+||++++- =|++-.+++.++.++..+ ...+..+.+.+.+..+.+.+.+.-++.+.|+-| ..+...
T Consensus 365 a~~Fp~fFG~M~gD~gyGlll~l~sl~l~~~~~~--~~~~~~~~l~~~~~~~~i~t~i~G~l~g~~fG~~~~~~~~p~~~ 442 (660)
T COG1269 365 ALFFPLFFGIMFGDLGYGLLLFLISLLLLRYFKK--RLPEGLKKLGKILLYLGISTIIWGFLYGEFFGPAVLLSTLPIGL 442 (660)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccc--ccchhHHHHHHHHHHHHHHHHHHHHHhccccCCccccccCCccc
Confidence 3567776543 578888888888653211 234455778888888888888877777777653 111100
Q ss_pred ccccccccch----hHHHHHHHHHHH---HHHHHHHHhhhh
Q 005714 392 NFGAQKVVKN----WQLFLCVAVGLW---AGLIIGFVTEYY 425 (681)
Q Consensus 392 ~~g~~~~~~~----~~~f~~~~~Gl~---~g~lI~~~TeYy 425 (681)
.+...+..+. .....|.++|++ .|.+++++-.++
T Consensus 443 ~~~~~~~~~~~~~~~~m~~sl~iG~~hl~~G~~lg~~~~~~ 483 (660)
T COG1269 443 LFVYHGLDEGLLFSNILILSLLIGVLHLSLGLLLGFINRVR 483 (660)
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000000111 256778899976 899999998887
No 37
>smart00097 WNT1 found in Wnt-1.
Probab=21.52 E-value=83 Score=34.40 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhccC
Q 005714 593 TMKSVGSAALKMVEEVRRQFNTI 615 (681)
Q Consensus 593 ~m~aVg~aA~~mV~EVRRQFrei 615 (681)
.|.+|.+++..-++|+++|||..
T Consensus 19 ~~~~v~~g~~~ai~ECq~QF~~~ 41 (305)
T smart00097 19 VMISVAEGAQEGIEECQHQFRFR 41 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 47799999999999999999964
No 38
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=20.90 E-value=40 Score=40.76 Aligned_cols=16 Identities=56% Similarity=0.845 Sum_probs=14.3
Q ss_pred CCCCCCCCCcchhhcc
Q 005714 265 NIPEDDPRNPAVIADN 280 (681)
Q Consensus 265 gIPEDDPRNPavIADn 280 (681)
-|-|||||||+=||..
T Consensus 794 ~I~DhDPR~paYIAtQ 809 (1004)
T KOG0793|consen 794 PIMDHDPRNPAYIATQ 809 (1004)
T ss_pred ccccCCCCccceeecc
Confidence 4889999999999886
No 39
>PF14045 YIEGIA: YIEGIA protein
Probab=20.76 E-value=2.1e+02 Score=31.24 Aligned_cols=79 Identities=19% Similarity=0.394 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhh--------------------hhcccccCchH----------------------HHHHHHHHHH
Q 005714 332 SIGILVCLITTLFATDI--------------------FEVKAVKEIEP----------------------SLKKQLIIST 369 (681)
Q Consensus 332 a~gil~Siig~~~v~~~--------------------~~~~~~~~~~~----------------------aL~~g~~~s~ 369 (681)
++|+++|.+|...+... +|+.|.+..++ +=|.-...++
T Consensus 37 ~LG~IAa~LGavaiPAL~~keytAvTFLaLAaqQFRdVR~mER~tL~~le~~ELV~RG~~YIEgIA~~FEaRNYl~m~ts 116 (285)
T PF14045_consen 37 SLGFIAAALGAVAIPALLEKEYTAVTFLALAAQQFRDVRNMERETLTNLEETELVPRGAAYIEGIAKTFEARNYLVMFTS 116 (285)
T ss_pred HHHHHHHHhhhhhhHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHhhhHHHHHHH
Q ss_pred HHHHHHHHHHHHhhcCccccccccccccccchhHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHHHHh
Q 005714 370 VLMTVGIAIVSWIGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVAD 438 (681)
Q Consensus 370 ~l~~v~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~f~~~~~Gl~~g~lI~~~TeYyTS~~~~PVr~IA~ 438 (681)
+++.+. ..++++..+|.++|++..++.++|++. +-+++||+
T Consensus 117 ~~Ts~~--------------------------~~l~~~~~~g~i~g~i~~~i~~~~~~g--~~i~DIa~ 157 (285)
T PF14045_consen 117 FLTSLA--------------------------YILFFNIWVGVIAGLIAILISKRFMSG--KSIGDIAD 157 (285)
T ss_pred HHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHcCC--CccccceE
No 40
>PRK01844 hypothetical protein; Provisional
Probab=20.71 E-value=1.6e+02 Score=26.06 Aligned_cols=39 Identities=18% Similarity=0.391 Sum_probs=0.0
Q ss_pred HHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhh
Q 005714 575 VFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMI 643 (681)
Q Consensus 575 Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~aAlkeMi 643 (681)
+++++++|+..-|+++--.++ +|+||+|-| +...+|+|.
T Consensus 10 ~I~~li~G~~~Gff~ark~~~--------------k~lk~NPpi----------------ne~mir~Mm 48 (72)
T PRK01844 10 GVVALVAGVALGFFIARKYMM--------------NYLQKNPPI----------------NEQMLKMMM 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHCCCC----------------CHHHHHHHH
No 41
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.30 E-value=1.1e+02 Score=29.13 Aligned_cols=25 Identities=40% Similarity=0.594 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCch
Q 005714 408 VAVGLWAGLIIGFVTEYYTSNAYSP 432 (681)
Q Consensus 408 ~~~Gl~~g~lI~~~TeYyTS~~~~P 432 (681)
+++|+++|++||++.-.+++.+.+-
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~~~~ 26 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSNQQK 26 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccchhh
Confidence 4678888888888888888776443
No 42
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=20.29 E-value=2.2e+02 Score=29.74 Aligned_cols=34 Identities=9% Similarity=0.357 Sum_probs=19.8
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhh
Q 005714 603 KMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMI 643 (681)
Q Consensus 603 ~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~aAlkeMi 643 (681)
-++|.+||+.|+.+| .|..+++.-+++..+|..+
T Consensus 170 vv~d~i~e~~~~~~~-------~~~~~a~~~a~~~~~~~ii 203 (246)
T TIGR00966 170 VVFDRIRENLRKYTR-------KTFTEVINLSINQTLSRTI 203 (246)
T ss_pred EEehHHHHHHhhccC-------CCHHHHHHHHHHHHHHHHH
Confidence 366888887764222 3567777666555444443
No 43
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.04 E-value=1.3e+02 Score=28.68 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcc
Q 005714 402 WQLFLCVAVGLWAGLIIGFVTEYYTS 427 (681)
Q Consensus 402 ~~~f~~~~~Gl~~g~lI~~~TeYyTS 427 (681)
+++..=.+.|+++|++||+++++|-.
T Consensus 46 ~klssefIsGilVGa~iG~llD~~ag 71 (116)
T COG5336 46 FKLSSEFISGILVGAGIGWLLDKFAG 71 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44444556666666666666666643
Done!