Query 005714
Match_columns 681
No_of_seqs 152 out of 752
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 05:23:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005714.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005714hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a01_A Proton pyrophosphatase; 100.0 7E-223 3E-227 1843.8 53.4 681 1-681 1-681 (766)
2 4av3_A K(+)-stimulated pyropho 100.0 1E-208 4E-213 1747.4 45.3 608 11-681 12-659 (735)
3 2dae_A KIAA0733 protein; mitog 38.0 27 0.00092 29.6 3.6 39 602-640 11-53 (75)
4 4f0a_B Protein WNT-8, XWNT-8; 32.0 27 0.00094 36.7 3.4 23 593-615 18-40 (316)
5 4av3_A K(+)-stimulated pyropho 30.3 4.3E+02 0.015 31.0 13.1 79 402-503 83-161 (735)
6 3fss_A Histone chaperone RTT10 20.3 74 0.0025 32.4 3.9 32 606-639 99-130 (237)
7 2keb_A DNA polymerase subunit 20.1 14 0.00049 33.0 -1.1 50 582-640 11-60 (101)
8 2g04_A Probable fatty-acid-COA 17.0 36 0.0012 36.1 0.8 19 251-272 28-46 (359)
9 2o1k_A NS28, non-structural gl 16.9 51 0.0017 26.1 1.4 18 599-616 3-20 (52)
10 2ca5_A MXIH; transport protein 15.7 25 0.00085 30.6 -0.7 13 268-280 38-50 (85)
No 1
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=100.00 E-value=7.4e-223 Score=1843.79 Aligned_cols=681 Identities=88% Similarity=1.348 Sum_probs=620.5
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhheeccCCCCCCCCCCCCCCCCcchhhhhhcCCCchhhcHHHHHHHHH
Q 005714 1 MGSTLLSELATEILVPVCAVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIEEEEGINDQSVVAKCADIQSA 80 (681)
Q Consensus 1 ~~~~~~~~~a~~~~~~~~~~~~l~~a~~~~~~v~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~m~~Is~~ 80 (681)
||.+.++|.++..++++++++|++||+++|++|+|||+++++..+.+++++||+++++.++++|.+++++.+|||||+++
T Consensus 1 ~~~~~~~~~~~~~~i~~~~~~Gi~fa~~~~~~vs~v~~~~~~~~~~~~~~~~g~~~~l~~~~~g~~~~~~~~~m~eIa~a 80 (766)
T 4a01_A 1 MGAAILPDLGTEILIPVCAVIGIAFALFQWLLVSKVKLSAVRDASPNAAAKNGYNDYLIEEEEGINDHNVVVKCAEIQNA 80 (766)
T ss_dssp -CCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCC-------------------------CCHHHHHHHHHHHH
T ss_pred CCcchhhhhhhhhHhHHHHHHHHHHHHHHHHheEeEEecCCccccccccccCCcccccchhhcccchHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999876544445567888889999999998888888999999999
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccCCCcccccccccccchhhhhhHHHHHHHHHHHHHHHhhhhh
Q 005714 81 ISEGATSFLFTEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLG 160 (681)
Q Consensus 81 I~eGA~afL~~qyk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~laG~iG 160 (681)
|||||++||+||||++++|+++++++|++++.+...++++++++.+++...|++.+..+++++++|++|+++|.++||+|
T Consensus 81 I~eGA~afL~rqYk~i~~~~vv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~~aG~iG 160 (766)
T 4a01_A 81 ISEGATSFLFTEYKYVGIFMVAFAILIFLFLGSVEGFSTSPQACSYDKTKTCKPALATAIFSTVSFLLGGVTSLVSGFLG 160 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCCCCEEETTEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988766545556777778888888888888888999999999999999999999
Q ss_pred hhhhhhhhHhhHHHHhhCHhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHhhhcchhhHHHHH
Q 005714 161 MKIATYANARTTLEARKSVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGDDWEGLFEAITGYGLGGSSMALF 240 (681)
Q Consensus 161 M~vAt~aN~Rta~aA~~~~~~al~vafr~GsVmGl~vvglgLl~l~~~~~~~~~~~~~~~~~~~~~i~gf~~GaS~iALF 240 (681)
||+|||+|+|||+|||+|+++||++|||+|+||||+|++|||++++++|++|..++++++.+.++++.||+||+|++|||
T Consensus 161 M~vat~ANvRtA~AA~~gl~~al~vAfr~GaVmGl~vvglgLlgl~~~~~~~~~~~~~~~~~~~~~l~Gfg~GaS~iAlF 240 (766)
T 4a01_A 161 MKIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLLVLYIAINLFKIYYGDDWGGLFEAITGYGLGGSSMALF 240 (766)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcCcchhhhhHHHhhcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998887666666666789999999999999999
Q ss_pred HHhhccccchhhhhcccccchhhcCCCCCCCCCcchhhccccccccccccccchhhhhhHHHHHHHHHHHHHhhcCCCcc
Q 005714 241 GRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHE 320 (681)
Q Consensus 241 aRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFESy~~si~aamil~~~~~~~~~~~ 320 (681)
+|+||||||||||||||||||||+|||||||||||||||||||||||||||+|||||||+++++++|+|+....++.+.+
T Consensus 241 aRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPAvIADnVGDNVGD~AGmgADLFESy~~t~iaamvlg~~~~~~~~~~ 320 (766)
T 4a01_A 241 GRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGLNHE 320 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCCTTCTTCTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHTSHHHHTTC
T ss_pred HHhccchhhhhhhhccccccccccCCCCcCCCCcchhhhhhccccccccccchhHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997542222224
Q ss_pred cccchHhHHHHHHHHHHHHHHHhhhhhhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccccccc
Q 005714 321 FTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSWIGLPSSFTIYNFGAQKVVK 400 (681)
Q Consensus 321 ~~~v~~Pl~v~a~gil~Siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~~l~~v~~~~~~~~~l~~~~~~~~~g~~~~~~ 400 (681)
+..++|||+++++||++|+++++++|+++|.++++++|++||+|+|+|++++++.+|++++|++|++++.+..++.+...
T Consensus 321 ~~~v~~PL~i~a~gii~siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~il~~v~~~~~~~~~l~~~~~~~~~~~~~~~~ 400 (766)
T 4a01_A 321 LTAMLYPLIVSSVGILVCLLTTLFATDFFEIKAVKEIEPALKKQLVISTVLMTIGVAVVSFVALPTSFTIFNFGVQKDVK 400 (766)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHTTCCCCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSEEEEEETTEEEEEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHhheeEeeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccch
Confidence 56799999999999999999999998777788889999999999999999999999999999999866543333333456
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHHHHhhcccCCchhHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 005714 401 NWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMY 480 (681)
Q Consensus 401 ~~~~f~~~~~Gl~~g~lI~~~TeYyTS~~~~PVr~IA~as~tG~ATnII~Gla~Gm~St~~Pvl~I~~ai~~sy~l~Gly 480 (681)
||++|+|+++|+++|.+|+++||||||++|||||+||++|+||||||||+||++||+||++|+++|++++++||+++|+|
T Consensus 401 ~~~~f~~~~~Gl~~g~lI~~iTeYyTs~~~~PV~~IA~aS~TG~ATnII~GlavGm~St~~Pvl~i~~ai~~sy~l~gly 480 (766)
T 4a01_A 401 SWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAISIFVSFTFAAMY 480 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHGGGCHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHhCcCchhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhHhhhhccccccccCCcchhhccCCchHHHHHhhhhhccCcccccccchhhHHHHHHHHHHHHHHHH
Q 005714 481 GIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFV 560 (681)
Q Consensus 481 GialAa~GMLst~~i~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDavGNTTaAi~KGfaIGSAaL~aLaLf~ay~ 560 (681)
|+|+||+|||||+++++++|+||||+||||||||||+||||||+|||+||++||||||++||||||||+|+||+||++|+
T Consensus 481 GiAlAa~GMLst~g~~lAvDayGPIaDNAGGIAEMs~l~~eVR~~TD~LDavGNTTaAi~KGfAIGSAaL~AlaLf~ay~ 560 (766)
T 4a01_A 481 GIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFV 560 (766)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhheeeeeccCCcccCcccHHHHccCcHHHHHHHHhhhhccCchhhhccchhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccceeecCChhHHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHh
Q 005714 561 SRAGITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIK 640 (681)
Q Consensus 561 ~~~~~~~~~l~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~aAlk 640 (681)
++.++..+|+.||+|++|+|+|+|+|||||+++|+||||+|++|||||||||||||||||||+||||+||||||||+|||
T Consensus 561 ~~~~~~~~~l~~P~Vl~GlliG~mlpflFsa~tm~AVg~AA~~mV~EVRRQFreipGImeg~~kPDY~rcV~I~T~aAlk 640 (766)
T 4a01_A 561 SRASITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTAKPDYATCVKISTDASIK 640 (766)
T ss_dssp HHTTCSCCBSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHhccceeecCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCChHHHHHHHHHHHHH
Confidence 99988899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhchhhHHHHhHHHHHhhhhhhHHHHHhhhhhhhhceecC
Q 005714 641 EMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQYRL 681 (681)
Q Consensus 641 eMi~Pgllail~Pi~vG~~~G~~al~GlL~G~~~sG~~lAi 681 (681)
|||+|+++++++|+++|++||+++|+|+|+|+++||++|||
T Consensus 641 eMi~Pgllav~~Pi~vG~~lG~~al~G~L~G~~vsGv~~Ai 681 (766)
T 4a01_A 641 EMIPPGALVMLTPLVVGILFGVETLSGVLAGSLVSGVQIAI 681 (766)
T ss_dssp HTHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999985
No 2
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=100.00 E-value=1.1e-208 Score=1747.36 Aligned_cols=608 Identities=40% Similarity=0.668 Sum_probs=527.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhheeccCCCCCCCCCCCCCCCCcchhhhhhcCCCchhhcHHHHHHHHHHHHhhhhhhh
Q 005714 11 TEILVPVCAVVGIIFSLVQWFIVSRVRLTHERPPSSNSDKKNGFNDYLIEEEEGINDQSVVAKCADIQSAISEGATSFLF 90 (681)
Q Consensus 11 ~~~~~~~~~~~~l~~a~~~~~~v~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~m~~Is~~I~eGA~afL~ 90 (681)
...+.+++++++|+|++++++|| +|||+| +||||||+++|||||++||+
T Consensus 12 v~~l~~~~~i~~l~~a~~~~~~v-------------------------~~~~~G------~~~M~eIa~~I~eGA~afL~ 60 (735)
T 4av3_A 12 VAALFFLIPLVALGFAAANFAAV-------------------------VRKPEG------TERMKEISSYIRSGADSFLA 60 (735)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHH-------------------------HTSCC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------------------HcCCCC------CHHHHHHHHHHHHHHHHHHH
Confidence 34555667899999999999987 378899 99999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhcccccccCCCcccccccccccchhhhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhhHh
Q 005714 91 TEYQYVGVFMIAFAILIFVFLGSVEGFSTKGQACTYDQQKMCKPALATAAFSTVSFLLGAITSVLSGFLGMKIATYANAR 170 (681)
Q Consensus 91 ~qyk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Fl~Ga~~S~laG~iGM~vAt~aN~R 170 (681)
||||++++|+++++++++++. +|+++++|++|+++|.+|||+|||+|||+|+|
T Consensus 61 rqyk~i~~~~vv~~~ll~~~~---------------------------~~~~ai~Fl~Ga~~S~~aGyiGM~vAt~ANvR 113 (735)
T 4av3_A 61 HETKAIFKVAIVIAILLMIFT---------------------------TWQTGVAFLLGAVMSASAGIVGMKMATRANVR 113 (735)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh---------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887753 36899999999999999999999999999999
Q ss_pred hHHHHhh--CHhHHHHhhccccchhHHHHHHHHHHHHHHHHHHHhhhcCC-------------CchhhHHHHhhhcchhh
Q 005714 171 TTLEARK--SVGKAFIVAFRSGAVMGFLLAANGLLVLFIAINLFKLYYGD-------------DWEGLFEAITGYGLGGS 235 (681)
Q Consensus 171 ta~aA~~--~~~~al~vafr~GsVmGl~vvglgLl~l~~~~~~~~~~~~~-------------~~~~~~~~i~gf~~GaS 235 (681)
||+|||+ ++++||++|||||+||||+|+||+|+++.++|++|..++++ +..+.++++.||+||+|
T Consensus 114 TA~AA~~s~~l~~aL~vAFrgGaVmGl~vvgl~Llgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Gfg~GaS 193 (735)
T 4av3_A 114 VAEAARTTKKIGPALKVAYQGGSVMGLSVGGFALLGLVLVYLIFGKWMGQVDNLNIYTNWLGINFVPFAMTVSGYALGCS 193 (735)
T ss_dssp HHHHTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHCSCEECTTSCEECHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCccHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccchhhhHHHhhhchhHH
Confidence 9999984 58999999999999999999999999999999988543321 12346788999999999
Q ss_pred HHHHHHHhhccccchhhhhcccccchhhcCCCCCCCCCcchhhccccccccccccccchhhhhhHHHHHHHHHHHHHhhc
Q 005714 236 SMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSF 315 (681)
Q Consensus 236 ~iALFaRvGGGIyTKAADVGADLVGKVEagIPEDDPRNPavIADnVGDNVGD~AGmgADLFESy~~si~aamil~~~~~~ 315 (681)
++|||+|||||||||+||||||||||||+|||||||||||||||||||||||||||+|||||||+++++++|+|++....
T Consensus 194 ~iALFaRvGGGIyTKaADVGADLVGKVEagIPEDDPRNPAvIADNVGDNVGDvAGMgADLFESY~~sivAamvL~~~~~~ 273 (735)
T 4av3_A 194 IIAMFDRVGGGVYTKAADMAADLVGKTELNLPEDDPRNPATIADNVGDNVGDVAGLGADLLESFVGAIVSSIILASYMFP 273 (735)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTTSCC-----------CCTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcceeccccccchhhhhhhcCCCCCCCCCCchhhhhcccccccccccccchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999976421
Q ss_pred ------CCC--------cccccchHhHHHHHHHHHHHHHHHhhhhhhhhcccccCchHHHHHHHHHHHHHHHHHHHHHHH
Q 005714 316 ------GIN--------HEFTSMLYPLLISSIGILVCLITTLFATDIFEVKAVKEIEPSLKKQLIISTVLMTVGIAIVSW 381 (681)
Q Consensus 316 ------~~~--------~~~~~v~~Pl~v~a~gil~Siig~~~v~~~~~~~~~~~~~~aL~~g~~~s~~l~~v~~~~~~~ 381 (681)
+.+ .....++|||+++++|+++|++|++++|. .++++++++++++++|.++++++++++++++
T Consensus 274 ~~~~~~g~~~~~~~~~~~~~~~~~~Pl~i~~~gii~SiiG~~~v~~---~~~~~~~~~~l~~~~~~s~~~s~i~~~~~~~ 350 (735)
T 4av3_A 274 IYVQKIGENLVHQVPKETIQALISYPIFFALVGLGCSMLGILYVIV---KKPSDNPQRELNISLWTSALLTVVLTAFLTY 350 (735)
T ss_dssp HTEEEETTEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCCCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhheeee---cccccchhHHHhhhHHhhHHHHHHHHHHHHH
Confidence 000 00124779999999999999999999752 3345778999999999999999999999999
Q ss_pred hhcCccccccccccccccchhHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHHHHhhcccCCchhHHhhhhhhhhhhHH
Q 005714 382 IGLPSSFTIYNFGAQKVVKNWQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVII 461 (681)
Q Consensus 382 ~~l~~~~~~~~~g~~~~~~~~~~f~~~~~Gl~~g~lI~~~TeYyTS~~~~PVr~IA~as~tG~ATnII~Gla~Gm~St~~ 461 (681)
+++|....... ......+|++|+|+++|+++|++|+++||||||++|||||+|||+|+||||||||+||++||+||+|
T Consensus 351 ~~l~~~~~~~~--~~~~~~~~~~f~~~~iGlv~g~lI~~iTEYYTs~~~~PVr~IA~aS~TG~ATnII~GLavGm~St~~ 428 (735)
T 4av3_A 351 FYLKDLQGLDV--LGFRFGAISPWFSAIIGIFSGILIGFWAEYYTSYRYKPTQFLGKSSIEGTGMVISNGLSLGMKSVFP 428 (735)
T ss_dssp HHHTTCSSHHH--HTCTTGGGHHHHHHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHGGGCHHHHHHHHHHHHHHHTHH
T ss_pred HHhhhhhhccc--ccccccchHHHHHHHHHHHHHHHHHHheeeecCCCCchHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 99876322111 1123457899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhccccccccCCcchhhccCCchHHHHHhhhhhccCcccccccc
Q 005714 462 PIFAIAVSIFVSFSFAAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGK 541 (681)
Q Consensus 462 Pvl~I~~ai~~sy~l~GlyGialAa~GMLst~~i~la~DayGPIaDNAgGIaEMs~l~~~VR~~tD~LDavGNTTaAi~K 541 (681)
|+++|+++|+.||+++|+||+++||+|||||+++++++|+||||+||||||||||+||||||||||+||++||||||++|
T Consensus 429 pvl~I~~~I~~s~~~aGlyGiaiAa~GMLst~gi~lAvDayGPIaDNAGGIAEMs~l~~eVR~~TD~LDavGNTTkAi~K 508 (735)
T 4av3_A 429 PTLTLVLGILFADYFAGLYGVAIAALGMLSFVATSVSVDSYGPIADNAGGISEMCELDPEVRKITDHLDAVGNTTAAIGK 508 (735)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceEeeecccCccCCccchHHHccCChHHHHhhhcccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHhhh-----------ccceeecCChhHHHHHHhhhhHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 005714 542 GFAIGSAALVSLALFGAFVSRA-----------GITTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRR 610 (681)
Q Consensus 542 GfaIGSAaL~aLaLf~ay~~~~-----------~~~~~~l~~p~Vl~GlliG~~lpflFsal~m~aVg~aA~~mV~EVRR 610 (681)
|||||||+|+||+||++|+++. ....+|+.||+|++|+|+|+|+|||||+++|+||||+|++|||||||
T Consensus 509 GfAIGSAaL~AlaLfaay~~~~~~~~~~~~~~~~~~~~~l~~P~VlvGlliGgmlpflFsaltm~AVgrAA~~mV~EVRR 588 (735)
T 4av3_A 509 GFAIGSAIFAALSLFASYMFSQISPSDIGKPPSLVLLLNMLDARVIAGALLGAAITYYFSGYLISAVTKAAMKMVDEIRR 588 (735)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCGGGSSSCGGGTSCCBTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred chhHhHHHHHHHHHHHHHHHHHhhhhhhccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998532 12359999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCCCCCCChhhHHHHHHHHHHhhhhchhhHHHHhHHHHHhhhhhhHHHHHhhhhhhhhceecC
Q 005714 611 QFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFFGVETLSGVLAGSLVSGVQYRL 681 (681)
Q Consensus 611 QFreipGi~eg~~kPDY~~cV~IsT~aAlkeMi~Pgllail~Pi~vG~~~G~~al~GlL~G~~~sG~~lAi 681 (681)
||||||||||||+||||+||||||||+||||||+|++|++++|+++|+++|+++++|+|+|++++|++||+
T Consensus 589 QFreipGimeg~~kPdy~~cV~I~T~~AlkeMi~p~~l~v~~P~~vg~~~g~~~l~g~L~g~~v~G~~~Ai 659 (735)
T 4av3_A 589 QAREIPGLLEGKAKPDYNRCIEITSDNALKQMGYPAFIAILTPLVTGFLLGAEFVGGVLIGTVLSGAMLAI 659 (735)
T ss_dssp ----------------CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCCcccCCCCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985
No 3
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.05 E-value=27 Score=29.57 Aligned_cols=39 Identities=13% Similarity=0.464 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhccCCCCCC----CCCCCChhhHHHHHHHHHHh
Q 005714 602 LKMVEEVRRQFNTIPGLME----GTTKPDYATCVKISTDASIK 640 (681)
Q Consensus 602 ~~mV~EVRRQFreipGi~e----g~~kPDY~~cV~IsT~aAlk 640 (681)
++|..|+|+.|.|+|-=.- -+..-+-+.|.++-+|-+=|
T Consensus 11 ~qvfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~qES~k 53 (75)
T 2dae_A 11 FQVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQESTR 53 (75)
T ss_dssp HHHHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHHHhccc
Confidence 5799999999999994210 14466778999998887765
No 4
>4f0a_B Protein WNT-8, XWNT-8; WNT signaling, ligand-receptor complex, frizzled, fatty acylation, glycosylation, signaling protein; HET: NAG BMA MAN FUC PAM; 3.25A {Xenopus laevis}
Probab=31.98 E-value=27 Score=36.71 Aligned_cols=23 Identities=30% Similarity=0.211 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhccC
Q 005714 593 TMKSVGSAALKMVEEVRRQFNTI 615 (681)
Q Consensus 593 ~m~aVg~aA~~mV~EVRRQFrei 615 (681)
.|.+|+++|..-|+|++.|||..
T Consensus 18 ~~~~v~~Ga~~~i~ECq~QFr~~ 40 (316)
T 4f0a_B 18 YSASVAVGAQNGIEECKYQFAWE 40 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 58899999999999999999964
No 5
>4av3_A K(+)-stimulated pyrophosphate-energized sodium PU; hydrolase, membrane pyrophosphotase, ION pump; 2.60A {Thermotoga maritima} PDB: 4av6_A
Probab=30.30 E-value=4.3e+02 Score=30.96 Aligned_cols=79 Identities=19% Similarity=0.297 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhccCCCchhHHHHhhcccCCchhHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 005714 402 WQLFLCVAVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYG 481 (681)
Q Consensus 402 ~~~f~~~~~Gl~~g~lI~~~TeYyTS~~~~PVr~IA~as~tG~ATnII~Gla~Gm~St~~Pvl~I~~ai~~sy~l~GlyG 481 (681)
|..-.|-++|-+.+.+-|++-=+= + .+..+| .|++++++... .=+.=+||.-+.+.|
T Consensus 83 ~~~ai~Fl~Ga~~S~~aGyiGM~v-A-t~ANvR-TA~AA~~s~~l--------------------~~aL~vAFrgGaVmG 139 (735)
T 4av3_A 83 WQTGVAFLLGAVMSASAGIVGMKM-A-TRANVR-VAEAARTTKKI--------------------GPALKVAYQGGSVMG 139 (735)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHH-HHHHTTTTCSS--------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHH-HHHHHhhcCCc--------------------cHHHHhhhccchHHH
Confidence 445567777777777766654332 1 123344 56666543211 113345677788899
Q ss_pred HHHHHHHHhhhhhHhhhhcccc
Q 005714 482 IAVAALGMLSTIATGLAIDAYG 503 (681)
Q Consensus 482 ialAa~GMLst~~i~la~DayG 503 (681)
..++.+|.|....+-+-...+-
T Consensus 140 l~vvgl~Llgl~~~~~~~~~~~ 161 (735)
T 4av3_A 140 LSVGGFALLGLVLVYLIFGKWM 161 (735)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999988877766554443
No 6
>3fss_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; 1.43A {Saccharomyces cerevisiae} PDB: 3tw1_A* 3tvv_A* 3gyp_A 3gyo_A 3to1_A
Probab=20.30 E-value=74 Score=32.37 Aligned_cols=32 Identities=28% Similarity=0.591 Sum_probs=25.7
Q ss_pred HHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHH
Q 005714 606 EEVRRQFNTIPGLMEGTTKPDYATCVKISTDASI 639 (681)
Q Consensus 606 ~EVRRQFreipGi~eg~~kPDY~~cV~IsT~aAl 639 (681)
+.+..||.+ .|+++.+.+ ||++|+|-..|-+.
T Consensus 99 ~~~~kq~~~-~g~~~~~~~-~f~~~i~~~~rQ~~ 130 (237)
T 3fss_A 99 ENTLNQFKK-LGLLDSNVT-DFEKCVEYIRKQAI 130 (237)
T ss_dssp HHHHHHHHH-TTSSCTTCC-CTHHHHHHHHHHHH
T ss_pred HHhhhhhhh-cCCCcccch-hHHHHHHHHHHHHh
Confidence 457899998 688888777 99999998866554
No 7
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=20.15 E-value=14 Score=32.98 Aligned_cols=50 Identities=14% Similarity=0.229 Sum_probs=26.9
Q ss_pred hhhHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHh
Q 005714 582 GAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIK 640 (681)
Q Consensus 582 G~~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~aAlk 640 (681)
|..+-.+|.+-.|.+|. .+++++||.|. || +=. ..-..||+++|..+.+.
T Consensus 11 ~~~~~~~~~~~~~~~Vs------ae~L~eEfdef-Gi-~~~-d~VldKc~ELC~~y~ld 60 (101)
T 2keb_A 11 GSSLEVLFQGPGSMSAS------AQQLAEELQIF-GL-DCE-EALIEKLVELCVQYGQN 60 (101)
T ss_dssp -------------CCCC------HHHHHHHHHHH-TC-BCC-HHHHHHHHHHHHHHTCC
T ss_pred CccchheeeCCchhhcc------HHHHHHHHHHc-CC-CCC-HHHHHHHHHHHHHcCCC
Confidence 45566677777777775 58999999974 33 111 13469999999999885
No 8
>2g04_A Probable fatty-acid-COA racemase FAR; isomerase; 2.70A {Mycobacterium tuberculosis}
Probab=16.99 E-value=36 Score=36.14 Aligned_cols=19 Identities=47% Similarity=0.686 Sum_probs=15.7
Q ss_pred hhhhcccccchhhcCCCCCCCC
Q 005714 251 AADVGADLVGKVERNIPEDDPR 272 (681)
Q Consensus 251 AADVGADLVGKVEagIPEDDPR 272 (681)
=||.|||.+ |||. |.||+|
T Consensus 28 LAdlGAeVI-KVE~--pgd~~~ 46 (359)
T 2g04_A 28 LADLGADVV-RVRR--PGGLTM 46 (359)
T ss_dssp HHHTTCEEE-EEEC--TTCCCS
T ss_pred HHHcCCcEE-EEcC--CCCCcc
Confidence 389999999 9996 667775
No 9
>2o1k_A NS28, non-structural glycoprotein NSP4; rotavirus enterotoxin, nonstructural protein, tetramer coiled-coil, virulence, viral protein; 1.67A {Simian rotavirus A} PDB: 2o1j_A 1g1j_A* 1g1i_A* 3miw_B
Probab=16.91 E-value=51 Score=26.09 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhhccCC
Q 005714 599 SAALKMVEEVRRQFNTIP 616 (681)
Q Consensus 599 ~aA~~mV~EVRRQFreip 616 (681)
+.+.++|.|.|||.+-|.
T Consensus 3 ~~mdrivkemrrQl~mId 20 (52)
T 2o1k_A 3 KQMDRVVKEMRRQLEMID 20 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 457899999999986543
No 10
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=15.70 E-value=25 Score=30.58 Aligned_cols=13 Identities=31% Similarity=0.759 Sum_probs=10.4
Q ss_pred CCCCCCcchhhcc
Q 005714 268 EDDPRNPAVIADN 280 (681)
Q Consensus 268 EDDPRNPavIADn 280 (681)
|+||.||+..|+.
T Consensus 38 ~~~PsnPa~LAey 50 (85)
T 2ca5_A 38 AKNPSNPQLLAEY 50 (85)
T ss_dssp HHCTTCHHHHHHH
T ss_pred HcCCCCHHHHHHH
Confidence 5799999988763
Done!