Query 005714
Match_columns 681
No_of_seqs 152 out of 752
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 05:23:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005714.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005714hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d4sgbi_ g.69.1.1 (I:) Plant ch 27.1 8.4 0.00061 28.5 0.7 9 267-275 26-34 (51)
2 d1tiha_ g.69.1.1 (A:) Multidom 23.2 11 0.00083 27.8 0.8 10 267-276 27-36 (53)
3 d1pjua1 g.69.1.1 (A:16-74) Wou 16.3 18 0.0013 27.3 0.5 9 267-275 35-43 (59)
4 d1jboa_ a.1.1.3 (A:) Phycocyan 12.8 74 0.0054 28.0 3.9 40 594-633 41-87 (162)
5 d1jhfa1 a.4.5.2 (A:2-72) LexA 11.9 42 0.0031 25.5 1.7 25 417-441 10-35 (71)
6 d1oyvi_ g.69.1.1 (I:) Wound-in 10.9 33 0.0024 28.9 0.8 10 267-276 50-59 (116)
7 d1lkta_ b.90.1.1 (A:) Head-bin 9.8 40 0.0029 28.1 0.9 29 247-275 11-39 (104)
8 d2d1ya1 c.2.1.2 (A:2-249) Hypo 8.7 1E+02 0.0073 28.0 3.4 44 601-644 63-124 (248)
9 d1yuaa2 g.41.3.3 (A:66-122) Pr 8.1 50 0.0036 24.9 0.7 11 267-277 10-21 (57)
10 d1rh5a_ f.41.1.1 (A:) Preprote 6.6 1.1E+02 0.0078 30.6 2.7 75 584-660 324-398 (422)
No 1
>d4sgbi_ g.69.1.1 (I:) Plant chymotrypsin inhibitor {Potato tuber (Solanum tuberosum) [TaxId: 4113]}
Probab=27.07 E-value=8.4 Score=28.45 Aligned_cols=9 Identities=33% Similarity=0.874 Sum_probs=7.5
Q ss_pred CCCCCCCcc
Q 005714 267 PEDDPRNPA 275 (681)
Q Consensus 267 PEDDPRNPa 275 (681)
-|.|||||-
T Consensus 26 GeSdp~npk 34 (51)
T d4sgbi_ 26 GQSDPKKPK 34 (51)
T ss_dssp CCBCTTSCC
T ss_pred CCCCCCCCC
Confidence 488999994
No 2
>d1tiha_ g.69.1.1 (A:) Multidomain proteinase inhibitor {Winged tobacco (Nicotiana alata) [TaxId: 4087]}
Probab=23.20 E-value=11 Score=27.83 Aligned_cols=10 Identities=60% Similarity=1.019 Sum_probs=7.9
Q ss_pred CCCCCCCcch
Q 005714 267 PEDDPRNPAV 276 (681)
Q Consensus 267 PEDDPRNPav 276 (681)
-|.|||||-.
T Consensus 27 Gesdp~nPK~ 36 (53)
T d1tiha_ 27 GESDPRNPKA 36 (53)
T ss_dssp CCCCSSSSCC
T ss_pred CCCCCCCCCc
Confidence 5889999953
No 3
>d1pjua1 g.69.1.1 (A:16-74) Wound-induced proteinase inhibitor-II {Tomato (Lycopersicon esculentum) [TaxId: 4081]}
Probab=16.33 E-value=18 Score=27.31 Aligned_cols=9 Identities=44% Similarity=0.929 Sum_probs=7.3
Q ss_pred CCCCCCCcc
Q 005714 267 PEDDPRNPA 275 (681)
Q Consensus 267 PEDDPRNPa 275 (681)
-|.|||||-
T Consensus 35 Gesdp~npk 43 (59)
T d1pjua1 35 GESDPKRPN 43 (59)
T ss_dssp CCBBTTBCC
T ss_pred CcCCCCCCC
Confidence 488999985
No 4
>d1jboa_ a.1.1.3 (A:) Phycocyanin alpha subunit {Synechococcus elongatus [TaxId: 32046]}
Probab=12.80 E-value=74 Score=28.01 Aligned_cols=40 Identities=13% Similarity=0.354 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHh-hccCCCCCC--CCCCC---C-hhhHHHH
Q 005714 594 MKSVGSAALKMVEEVRRQ-FNTIPGLME--GTTKP---D-YATCVKI 633 (681)
Q Consensus 594 m~aVg~aA~~mV~EVRRQ-FreipGi~e--g~~kP---D-Y~~cV~I 633 (681)
-+.....+.++|+|.+++ |++.|.+.+ |..-| + +++|.+=
T Consensus 41 a~~L~~na~~IV~~A~~~l~~~~P~l~~~gG~~y~~~~~r~~~C~RD 87 (162)
T d1jboa_ 41 ARALTNNAQSLIDGAAQAVYQKFPYTTTMQGSQYASTPEGKAKCARD 87 (162)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHCGGGGTSCSTTSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcCccCCCCccccccHHHHHHHHHH
Confidence 355667789999998888 556898875 43344 2 5778653
No 5
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=11.87 E-value=42 Score=25.51 Aligned_cols=25 Identities=8% Similarity=0.316 Sum_probs=20.6
Q ss_pred HHHHHhhhhccCCCch-hHHHHhhcc
Q 005714 417 IIGFVTEYYTSNAYSP-VQDVADSCR 441 (681)
Q Consensus 417 lI~~~TeYyTS~~~~P-Vr~IA~as~ 441 (681)
+.-++.+|+..+.|.| +|||++...
T Consensus 10 vL~~I~~~~~~~G~~Ps~rei~~~~g 35 (71)
T d1jhfa1 10 VFDLIRDHISQTGMPPTRAEIAQRLG 35 (71)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHcC
Confidence 4568899999999988 689998664
No 6
>d1oyvi_ g.69.1.1 (I:) Wound-induced proteinase inhibitor-II {Tomato (Lycopersicon esculentum) [TaxId: 4081]}
Probab=10.95 E-value=33 Score=28.91 Aligned_cols=10 Identities=40% Similarity=0.840 Sum_probs=7.7
Q ss_pred CCCCCCCcch
Q 005714 267 PEDDPRNPAV 276 (681)
Q Consensus 267 PEDDPRNPav 276 (681)
-|.|||||-.
T Consensus 50 Gesdp~nPKa 59 (116)
T d1oyvi_ 50 GESDPKRPNA 59 (116)
T ss_dssp CCBCSSSCCE
T ss_pred CccCCCCCCc
Confidence 4889999853
No 7
>d1lkta_ b.90.1.1 (A:) Head-binding domain of phage P22 tailspike protein {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=9.85 E-value=40 Score=28.06 Aligned_cols=29 Identities=34% Similarity=0.454 Sum_probs=22.0
Q ss_pred ccchhhhhcccccchhhcCCCCCCCCCcc
Q 005714 247 IYTKAADVGADLVGKVERNIPEDDPRNPA 275 (681)
Q Consensus 247 IyTKAADVGADLVGKVEagIPEDDPRNPa 275 (681)
+||-+-.-=++.-||+=-|=...|||||+
T Consensus 11 ~ftm~r~F~~~~~GKiYIGk~~TDP~~p~ 39 (104)
T d1lkta_ 11 IFTESRSFKAVANGKIYIGQIDTDPVNPA 39 (104)
T ss_dssp CCBCSSSSCBCTTEEEEEESTTSCTTSGG
T ss_pred hhcccHHHHhhcCCcEEEecCCCCCCCcc
Confidence 35555555567778888888999999996
No 8
>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}
Probab=8.73 E-value=1e+02 Score=28.01 Aligned_cols=44 Identities=16% Similarity=0.303 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhccCCCCC-----------CCCCCCChhhHHHH-------HHHHHHhhhhc
Q 005714 601 ALKMVEEVRRQFNTIPGLM-----------EGTTKPDYATCVKI-------STDASIKEMIP 644 (681)
Q Consensus 601 A~~mV~EVRRQFreipGi~-----------eg~~kPDY~~cV~I-------sT~aAlkeMi~ 644 (681)
..++++|+.++|..+..+. +-....|+++++++ +||++++.|..
T Consensus 63 v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~ 124 (248)
T d2d1ya1 63 RVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRK 124 (248)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccc
Confidence 3578899999998765433 22334578999988 78888888875
No 9
>d1yuaa2 g.41.3.3 (A:66-122) Prokaryotic DNA topoisomerase I, a C-terminal fragment {Escherichia coli [TaxId: 562]}
Probab=8.14 E-value=50 Score=24.86 Aligned_cols=11 Identities=36% Similarity=0.951 Sum_probs=7.9
Q ss_pred CCCCCC-Ccchh
Q 005714 267 PEDDPR-NPAVI 277 (681)
Q Consensus 267 PEDDPR-NPavI 277 (681)
|+-||- ||+||
T Consensus 10 P~~D~dGn~~vv 21 (57)
T d1yuaa2 10 PQQDPEGNKTMV 21 (57)
T ss_dssp CSSCTTCCCEEE
T ss_pred CccCCCCCEeEE
Confidence 666665 88887
No 10
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=6.63 E-value=1.1e+02 Score=30.59 Aligned_cols=75 Identities=11% Similarity=0.098 Sum_probs=37.6
Q ss_pred hHHHHHHhHhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCChhhHHHHHHHHHHhhhhchhhHHHHhHHHHHhhh
Q 005714 584 MLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGTTKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGIFF 660 (681)
Q Consensus 584 ~lpflFsal~m~aVg~aA~~mV~EVRRQFreipGi~eg~~kPDY~~cV~IsT~aAlkeMi~Pgllail~Pi~vG~~~ 660 (681)
.+-.+|+-.=.+.++-...|+=|+.|+|=--|||+..|++.=|| -.-++.+|.++=.-+.-++++++ |-++|.++
T Consensus 324 ~l~i~Fs~f~~~~~~~~p~~iAe~lkk~g~~IpGiRpG~~T~~~-~L~~vi~rit~~Ga~~l~~ia~~-p~~l~~~~ 398 (422)
T d1rh5a_ 324 ITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEH-RLKRYIPPLTVMSSAFVGFLATI-ANFIGALG 398 (422)
T ss_dssp HHHHHHHHHHHHHHTCSHHHHHHHC------------CHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHCCTT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcCCCCCCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhc
Confidence 34556666656666667777778888877789999777544333 13344555555566666777764 66666554
Done!