Query 005715
Match_columns 681
No_of_seqs 173 out of 241
Neff 3.5
Searched_HMMs 46136
Date Thu Mar 28 12:39:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005715.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005715hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02705 beta-amylase 100.0 1E-256 3E-261 2052.6 58.6 636 27-679 34-680 (681)
2 PLN02905 beta-amylase 100.0 8E-240 2E-244 1925.4 57.2 620 50-680 63-701 (702)
3 PLN00197 beta-amylase; Provisi 100.0 5E-186 1E-190 1492.9 45.7 438 240-678 97-543 (573)
4 PLN02803 beta-amylase 100.0 1E-185 2E-190 1486.4 47.3 429 244-676 81-515 (548)
5 PLN02801 beta-amylase 100.0 7E-186 1E-190 1482.6 45.0 431 245-676 12-450 (517)
6 PLN02161 beta-amylase 100.0 6E-183 1E-187 1459.6 46.6 430 242-675 85-531 (531)
7 PF01373 Glyco_hydro_14: Glyco 100.0 2E-163 4E-168 1287.7 26.5 389 252-667 1-402 (402)
8 PF05687 DUF822: Plant protein 100.0 6.3E-41 1.4E-45 314.1 10.5 130 62-204 2-133 (150)
9 PF02449 Glyco_hydro_42: Beta- 99.8 3.7E-18 8.1E-23 178.7 11.5 219 268-535 8-238 (374)
10 COG1874 LacA Beta-galactosidas 99.2 1E-10 2.3E-15 133.0 12.7 154 268-468 28-195 (673)
11 PF01301 Glyco_hydro_35: Glyco 98.7 3.5E-08 7.5E-13 103.6 9.0 118 268-416 22-146 (319)
12 PLN03059 beta-galactosidase; P 98.2 7.3E-06 1.6E-10 95.9 11.4 147 267-462 56-213 (840)
13 TIGR03356 BGL beta-galactosida 97.5 0.00033 7.2E-09 76.6 9.4 111 266-416 50-164 (427)
14 PF00150 Cellulase: Cellulase 97.3 0.00091 2E-08 65.8 9.0 60 270-331 21-84 (281)
15 KOG0496 Beta-galactosidase [Ca 97.1 0.0025 5.4E-08 73.4 10.8 86 267-364 46-137 (649)
16 PF00232 Glyco_hydro_1: Glycos 97.1 0.0015 3.3E-08 71.7 8.2 101 267-407 55-159 (455)
17 PF02638 DUF187: Glycosyl hydr 96.6 0.15 3.3E-06 54.1 18.6 230 266-578 15-258 (311)
18 PRK09852 cryptic 6-phospho-bet 96.5 0.011 2.4E-07 66.1 9.9 111 266-415 67-182 (474)
19 smart00633 Glyco_10 Glycosyl h 96.1 0.026 5.7E-07 57.3 9.1 46 293-349 3-48 (254)
20 PRK15014 6-phospho-beta-glucos 96.1 0.021 4.6E-07 63.9 9.0 113 266-417 65-182 (477)
21 PF14871 GHL6: Hypothetical gl 96.1 0.081 1.8E-06 50.1 11.6 111 274-407 4-124 (132)
22 PLN02705 beta-amylase 96.0 0.011 2.4E-07 67.9 6.1 78 15-93 13-100 (681)
23 PRK13511 6-phospho-beta-galact 95.7 0.041 8.8E-07 61.4 8.8 110 266-416 50-163 (469)
24 PLN02814 beta-glucosidase 95.5 0.053 1.2E-06 61.2 9.1 111 266-415 73-187 (504)
25 TIGR01233 lacG 6-phospho-beta- 95.1 0.053 1.1E-06 60.6 7.5 110 265-415 48-161 (467)
26 PLN02998 beta-glucosidase 95.0 0.084 1.8E-06 59.6 8.9 112 266-416 78-193 (497)
27 PLN02849 beta-glucosidase 95.0 0.096 2.1E-06 59.2 9.1 112 266-416 75-190 (503)
28 PRK09589 celA 6-phospho-beta-g 94.7 0.12 2.6E-06 58.0 8.9 112 266-416 63-179 (476)
29 PRK09593 arb 6-phospho-beta-gl 94.6 0.14 3.1E-06 57.4 9.2 112 266-416 69-185 (478)
30 PF00331 Glyco_hydro_10: Glyco 93.9 0.13 2.8E-06 54.5 6.6 206 275-586 26-248 (320)
31 COG2723 BglB Beta-glucosidase/ 93.2 1.8 3.9E-05 49.1 14.3 148 265-460 54-206 (460)
32 PF01229 Glyco_hydro_39: Glyco 93.1 0.33 7.2E-06 54.2 8.5 103 269-408 38-151 (486)
33 cd03465 URO-D_like The URO-D _ 91.7 1.1 2.3E-05 46.5 9.7 117 272-402 170-297 (330)
34 PF07745 Glyco_hydro_53: Glyco 89.9 0.62 1.3E-05 50.5 6.1 53 274-331 28-80 (332)
35 PF10566 Glyco_hydro_97: Glyco 89.6 0.24 5.2E-06 52.4 2.7 105 243-375 81-186 (273)
36 PF14488 DUF4434: Domain of un 88.5 1.6 3.5E-05 42.8 7.4 56 268-325 18-83 (166)
37 TIGR01093 aroD 3-dehydroquinat 87.8 4 8.7E-05 41.3 9.9 122 262-424 69-193 (228)
38 PRK02412 aroD 3-dehydroquinate 87.3 5.8 0.00013 41.1 10.9 123 262-424 86-211 (253)
39 PRK11572 copper homeostasis pr 86.1 2.4 5.2E-05 44.6 7.4 71 248-329 51-124 (248)
40 cd00465 URO-D_CIMS_like The UR 85.7 1.4 3E-05 45.2 5.4 61 271-335 145-210 (306)
41 cd00502 DHQase_I Type I 3-dehy 85.6 12 0.00026 37.6 11.9 144 270-456 76-221 (225)
42 PF03932 CutC: CutC family; I 85.1 1.6 3.5E-05 44.4 5.5 67 246-323 48-117 (201)
43 PF03659 Glyco_hydro_71: Glyco 83.4 2.9 6.3E-05 46.2 6.9 54 268-330 15-68 (386)
44 PF01487 DHquinase_I: Type I 3 83.2 8 0.00017 38.7 9.4 124 257-424 61-188 (224)
45 PRK10785 maltodextrin glucosid 83.2 32 0.0007 40.0 15.4 157 268-462 177-364 (598)
46 PF00128 Alpha-amylase: Alpha 83.2 3 6.6E-05 41.2 6.4 63 268-333 2-79 (316)
47 PRK01060 endonuclease IV; Prov 82.8 2.3 4.9E-05 43.1 5.5 63 254-323 1-63 (281)
48 PRK13111 trpA tryptophan synth 82.7 5.4 0.00012 41.8 8.3 90 247-367 88-178 (258)
49 TIGR01463 mtaA_cmuA methyltran 81.0 2.7 5.8E-05 44.4 5.4 58 273-334 183-243 (340)
50 COG3693 XynA Beta-1,4-xylanase 80.7 1.5 3.2E-05 48.0 3.4 118 286-459 59-182 (345)
51 cd06592 GH31_glucosidase_KIAA1 80.4 21 0.00045 37.8 11.7 83 267-365 27-116 (303)
52 cd03311 CIMS_C_terminal_like C 80.2 7.2 0.00016 41.1 8.3 95 270-366 155-252 (332)
53 TIGR02104 pulA_typeI pullulana 78.7 20 0.00044 41.5 11.9 65 269-333 163-256 (605)
54 cd03308 CmuA_CmuC_like CmuA_Cm 78.4 3.4 7.5E-05 44.9 5.4 79 248-333 172-277 (378)
55 PLN02591 tryptophan synthase 76.7 12 0.00027 39.1 8.7 90 247-367 77-167 (250)
56 PF02065 Melibiase: Melibiase; 76.2 10 0.00022 42.3 8.2 79 267-349 55-144 (394)
57 smart00642 Aamy Alpha-amylase 75.9 11 0.00023 36.8 7.5 69 266-334 15-97 (166)
58 PLN02361 alpha-amylase 75.3 9.1 0.0002 42.7 7.6 66 268-336 27-106 (401)
59 TIGR00542 hxl6Piso_put hexulos 75.3 5.1 0.00011 40.9 5.3 56 268-326 14-71 (279)
60 PF00290 Trp_syntA: Tryptophan 75.0 20 0.00043 38.0 9.7 91 246-367 85-176 (259)
61 PLN02229 alpha-galactosidase 74.6 5.3 0.00011 45.1 5.6 70 267-337 77-160 (427)
62 PRK13209 L-xylulose 5-phosphat 73.5 7 0.00015 39.7 5.8 67 255-326 8-76 (283)
63 PF01261 AP_endonuc_2: Xylose 72.9 3.4 7.4E-05 38.7 3.2 46 276-326 1-46 (213)
64 TIGR00433 bioB biotin syntheta 71.1 10 0.00023 38.9 6.4 55 273-329 123-180 (296)
65 cd06593 GH31_xylosidase_YicI Y 70.7 23 0.00049 37.2 8.9 88 266-367 20-114 (308)
66 PRK09856 fructoselysine 3-epim 68.5 12 0.00026 37.7 6.2 51 271-328 14-68 (275)
67 TIGR02402 trehalose_TreZ malto 68.1 10 0.00023 43.5 6.2 61 268-333 109-186 (542)
68 PF01055 Glyco_hydro_31: Glyco 68.0 17 0.00037 39.7 7.6 86 266-367 39-134 (441)
69 PHA00442 host recBCD nuclease 67.9 5.2 0.00011 33.8 2.8 27 274-319 30-56 (59)
70 KOG0626 Beta-glucosidase, lact 67.7 24 0.00051 41.1 8.8 71 267-349 88-163 (524)
71 cd07944 DRE_TIM_HOA_like 4-hyd 67.4 47 0.001 34.8 10.3 77 273-369 85-166 (266)
72 cd03307 Mta_CmuA_like MtaA_Cmu 67.1 6.5 0.00014 41.4 4.1 55 274-334 175-232 (326)
73 TIGR01515 branching_enzym alph 67.0 12 0.00025 43.7 6.4 56 268-329 154-228 (613)
74 PRK08195 4-hyroxy-2-oxovalerat 65.6 45 0.00098 36.3 10.1 90 274-402 92-186 (337)
75 PLN02447 1,4-alpha-glucan-bran 65.4 3.3E+02 0.0072 33.4 18.3 62 266-332 246-326 (758)
76 COG3142 CutC Uncharacterized p 65.2 14 0.0003 39.1 5.9 76 247-333 50-128 (241)
77 CHL00200 trpA tryptophan synth 64.6 31 0.00067 36.4 8.4 92 247-369 90-182 (263)
78 PF08821 CGGC: CGGC domain; I 64.3 22 0.00048 33.1 6.5 56 269-330 51-107 (107)
79 COG3867 Arabinogalactan endo-1 64.3 16 0.00034 40.3 6.3 57 273-331 66-126 (403)
80 PRK10150 beta-D-glucuronidase; 64.2 1.8E+02 0.0039 33.7 15.1 45 267-325 310-354 (604)
81 PRK09875 putative hydrolase; P 63.9 1.6E+02 0.0035 31.7 13.7 68 262-349 26-94 (292)
82 PRK10658 putative alpha-glucos 63.8 50 0.0011 39.3 10.7 86 268-367 281-373 (665)
83 PRK06252 methylcobalamin:coenz 62.9 8.6 0.00019 40.5 4.0 55 273-333 183-240 (339)
84 COG1649 Uncharacterized protei 61.7 74 0.0016 36.2 11.1 127 265-407 59-199 (418)
85 cd04724 Tryptophan_synthase_al 61.4 36 0.00078 35.0 8.1 87 248-365 76-163 (242)
86 PRK13210 putative L-xylulose 5 61.2 20 0.00044 36.2 6.2 53 270-326 16-71 (284)
87 PLN02808 alpha-galactosidase 61.2 15 0.00032 41.0 5.6 59 267-325 46-115 (386)
88 PRK13398 3-deoxy-7-phosphohept 59.7 37 0.00079 36.0 7.9 66 260-330 31-99 (266)
89 cd03309 CmuC_like CmuC_like. P 58.7 11 0.00024 40.6 4.0 55 275-333 160-221 (321)
90 TIGR03234 OH-pyruv-isom hydrox 58.4 22 0.00047 35.7 5.8 42 271-324 15-56 (254)
91 PRK12313 glycogen branching en 58.2 23 0.0005 41.2 6.8 58 266-329 166-242 (633)
92 PRK09989 hypothetical protein; 57.6 25 0.00054 35.6 6.1 42 271-324 16-57 (258)
93 PRK08508 biotin synthase; Prov 57.6 59 0.0013 34.1 9.0 53 267-325 40-93 (279)
94 TIGR02403 trehalose_treC alpha 56.2 32 0.00069 39.5 7.3 66 266-333 23-101 (543)
95 PLN02389 biotin synthase 55.6 23 0.00049 39.2 5.9 45 273-323 178-229 (379)
96 PF01026 TatD_DNase: TatD rela 55.5 78 0.0017 32.4 9.3 46 272-330 16-62 (255)
97 PRK09441 cytoplasmic alpha-amy 54.3 30 0.00066 38.8 6.7 67 268-334 20-108 (479)
98 cd00717 URO-D Uroporphyrinogen 54.3 21 0.00046 37.8 5.2 75 274-364 181-260 (335)
99 PRK04302 triosephosphate isome 54.3 29 0.00062 35.0 5.9 47 274-330 76-122 (223)
100 PRK12595 bifunctional 3-deoxy- 54.2 44 0.00096 36.9 7.7 72 250-330 119-190 (360)
101 PF01208 URO-D: Uroporphyrinog 53.1 20 0.00044 37.6 4.8 111 274-399 186-307 (343)
102 PRK12331 oxaloacetate decarbox 52.6 1.2E+02 0.0026 34.6 10.9 51 269-329 95-145 (448)
103 PF01791 DeoC: DeoC/LacD famil 52.5 11 0.00023 38.2 2.5 53 273-326 79-131 (236)
104 TIGR02456 treS_nterm trehalose 51.9 42 0.00092 38.4 7.4 65 266-333 24-102 (539)
105 TIGR01464 hemE uroporphyrinoge 51.3 26 0.00057 37.2 5.3 75 274-364 184-263 (338)
106 PRK13575 3-dehydroquinate dehy 50.8 1.1E+02 0.0024 31.8 9.7 50 270-330 83-133 (238)
107 cd07943 DRE_TIM_HOA 4-hydroxy- 50.7 1.1E+02 0.0024 31.6 9.6 91 274-403 89-184 (263)
108 PRK09997 hydroxypyruvate isome 50.7 31 0.00066 35.0 5.5 41 271-323 16-56 (258)
109 PLN02692 alpha-galactosidase 50.6 28 0.0006 39.4 5.6 57 267-323 70-137 (412)
110 TIGR02102 pullulan_Gpos pullul 50.1 31 0.00068 43.4 6.4 62 268-329 478-577 (1111)
111 PF13653 GDPD_2: Glycerophosph 49.4 16 0.00034 27.3 2.3 18 273-290 10-27 (30)
112 PRK10933 trehalose-6-phosphate 48.4 49 0.0011 38.2 7.3 65 266-333 29-107 (551)
113 TIGR00262 trpA tryptophan synt 48.4 1E+02 0.0022 32.3 9.0 89 248-367 87-176 (256)
114 cd01299 Met_dep_hydrolase_A Me 48.4 53 0.0012 34.1 6.9 64 266-333 116-182 (342)
115 PRK07360 FO synthase subunit 2 48.2 17 0.00037 39.6 3.5 53 272-329 162-223 (371)
116 TIGR02090 LEU1_arch isopropylm 47.8 76 0.0016 34.7 8.2 85 272-366 73-166 (363)
117 PRK00115 hemE uroporphyrinogen 47.6 31 0.00068 36.9 5.2 76 273-364 189-269 (346)
118 cd06604 GH31_glucosidase_II_Ma 47.1 1.9E+02 0.0041 31.1 11.0 86 265-366 19-113 (339)
119 PRK05222 5-methyltetrahydropte 46.6 28 0.00062 41.8 5.2 82 270-362 581-667 (758)
120 PLN02475 5-methyltetrahydropte 46.5 51 0.0011 39.9 7.2 83 270-363 586-673 (766)
121 PF10566 Glyco_hydro_97: Glyco 46.5 55 0.0012 35.1 6.8 62 268-331 30-95 (273)
122 COG1619 LdcA Uncharacterized p 46.0 58 0.0012 35.6 6.9 94 258-360 14-107 (313)
123 COG2730 BglC Endoglucanase [Ca 45.7 32 0.00069 38.0 5.1 58 273-333 76-140 (407)
124 PRK13125 trpA tryptophan synth 45.7 68 0.0015 32.9 7.1 64 248-330 74-137 (244)
125 PLN00196 alpha-amylase; Provis 45.3 66 0.0014 36.3 7.5 64 268-334 42-119 (428)
126 cd00958 DhnA Class I fructose- 44.3 49 0.0011 33.2 5.8 66 267-338 73-138 (235)
127 PLN03231 putative alpha-galact 44.0 1.1E+02 0.0024 34.1 8.8 56 268-323 16-102 (357)
128 cd00951 KDGDH 5-dehydro-4-deox 44.0 1.2E+02 0.0025 32.0 8.7 113 246-384 67-182 (289)
129 PRK14040 oxaloacetate decarbox 43.7 1.8E+02 0.0038 34.5 10.8 51 269-329 96-146 (593)
130 TIGR00695 uxuA mannonate dehyd 43.7 39 0.00085 38.0 5.4 51 275-329 15-65 (394)
131 PRK09505 malS alpha-amylase; R 43.6 58 0.0013 39.0 7.0 62 268-329 228-314 (683)
132 PRK03906 mannonate dehydratase 43.4 36 0.00078 38.0 5.0 64 275-347 15-78 (385)
133 PF06336 Corona_5a: Coronaviru 43.2 7.3 0.00016 33.3 -0.2 20 491-510 2-21 (65)
134 TIGR03699 mena_SCO4550 menaqui 42.8 23 0.00049 37.7 3.3 57 273-329 143-203 (340)
135 TIGR03551 F420_cofH 7,8-dideme 42.1 22 0.00047 38.2 3.1 57 273-329 141-201 (343)
136 PLN02877 alpha-amylase/limit d 41.9 44 0.00095 41.6 5.8 63 271-333 374-493 (970)
137 cd01310 TatD_DNAse TatD like p 41.9 2E+02 0.0043 28.2 9.4 47 271-330 16-62 (251)
138 PRK14706 glycogen branching en 41.5 63 0.0014 38.3 6.9 59 266-329 163-239 (639)
139 cd06602 GH31_MGAM_SI_GAA This 40.9 2.6E+02 0.0056 30.4 10.9 92 265-367 19-119 (339)
140 cd06599 GH31_glycosidase_Aec37 40.7 1.3E+02 0.0029 32.0 8.6 87 269-367 28-121 (317)
141 cd07948 DRE_TIM_HCS Saccharomy 40.3 1.8E+02 0.0039 30.6 9.3 53 274-328 75-133 (262)
142 PRK04326 methionine synthase; 40.3 56 0.0012 34.6 5.7 78 270-364 161-239 (330)
143 PF05706 CDKN3: Cyclin-depende 40.2 18 0.0004 36.3 2.0 47 269-323 57-103 (168)
144 PF09184 PPP4R2: PPP4R2; Inte 39.5 7.6 0.00016 41.6 -0.8 30 644-673 96-126 (288)
145 PF01717 Meth_synt_2: Cobalami 39.3 67 0.0014 34.0 6.1 86 270-367 154-245 (324)
146 cd07941 DRE_TIM_LeuA3 Desulfob 39.2 2.1E+02 0.0044 30.1 9.5 84 274-365 82-175 (273)
147 cd06565 GH20_GcnA-like Glycosy 39.1 4.2E+02 0.0091 28.3 11.9 63 265-327 12-80 (301)
148 PLN02960 alpha-amylase 39.1 86 0.0019 38.9 7.6 57 266-329 412-486 (897)
149 PF00682 HMGL-like: HMGL-like 38.9 1.9E+02 0.004 29.0 8.9 106 268-404 65-181 (237)
150 PRK07094 biotin synthase; Prov 38.6 45 0.00097 35.1 4.7 56 273-329 129-187 (323)
151 PRK05402 glycogen branching en 38.5 72 0.0016 38.1 6.8 61 264-329 259-337 (726)
152 TIGR03217 4OH_2_O_val_ald 4-hy 38.4 1.2E+02 0.0026 33.1 7.9 73 274-366 91-168 (333)
153 TIGR03849 arch_ComA phosphosul 38.2 67 0.0015 34.0 5.8 50 270-327 71-120 (237)
154 PRK08883 ribulose-phosphate 3- 37.9 1.9E+02 0.0041 29.8 8.9 111 267-396 9-127 (220)
155 TIGR00423 radical SAM domain p 37.7 35 0.00075 36.1 3.7 56 272-327 106-165 (309)
156 TIGR02631 xylA_Arthro xylose i 37.6 40 0.00088 37.3 4.3 54 268-326 30-87 (382)
157 cd07939 DRE_TIM_NifV Streptomy 37.5 1.7E+02 0.0038 30.1 8.6 83 273-367 72-165 (259)
158 PRK08508 biotin synthase; Prov 37.4 42 0.00092 35.2 4.2 51 273-329 102-159 (279)
159 cd02742 GH20_hexosaminidase Be 37.1 4.5E+02 0.0097 28.0 11.8 131 265-405 11-183 (303)
160 PRK09936 hypothetical protein; 36.6 65 0.0014 35.2 5.5 53 268-329 36-94 (296)
161 PF04476 DUF556: Protein of un 35.7 45 0.00098 35.3 4.1 44 276-323 137-183 (235)
162 PRK15452 putative protease; Pr 35.6 39 0.00085 38.3 3.9 41 246-291 57-97 (443)
163 TIGR02401 trehalose_TreY malto 35.5 1.3E+02 0.0028 37.1 8.3 65 268-333 14-91 (825)
164 PRK14511 maltooligosyl trehalo 35.4 1.3E+02 0.0029 37.3 8.4 65 268-333 18-95 (879)
165 cd06600 GH31_MGAM-like This fa 35.4 3.4E+02 0.0074 29.1 10.6 87 266-366 20-113 (317)
166 PF02836 Glyco_hydro_2_C: Glyc 35.3 77 0.0017 33.0 5.7 50 266-329 32-81 (298)
167 KOG4246 Predicted DNA-binding 35.0 30 0.00066 42.3 3.0 46 557-602 993-1055(1194)
168 PRK08445 hypothetical protein; 34.7 46 0.001 36.3 4.1 57 273-329 144-204 (348)
169 COG0159 TrpA Tryptophan syntha 34.7 2.1E+02 0.0045 30.9 8.8 93 246-369 92-185 (265)
170 COG1082 IolE Sugar phosphate i 34.1 69 0.0015 32.0 5.0 49 269-324 14-62 (274)
171 PRK13753 dihydropteroate synth 34.1 5.4E+02 0.012 27.9 11.8 59 258-321 13-77 (279)
172 smart00854 PGA_cap Bacterial c 33.9 90 0.0019 31.6 5.8 57 268-331 158-214 (239)
173 smart00518 AP2Ec AP endonuclea 33.9 1.1E+02 0.0024 31.0 6.4 52 270-323 10-61 (273)
174 TIGR03700 mena_SCO4494 putativ 33.4 44 0.00096 36.1 3.7 58 272-329 149-210 (351)
175 PRK06256 biotin synthase; Vali 32.5 52 0.0011 34.9 4.0 46 274-325 153-205 (336)
176 PRK02227 hypothetical protein; 32.3 52 0.0011 34.9 3.9 46 274-323 135-183 (238)
177 cd07945 DRE_TIM_CMS Leptospira 31.8 1.5E+02 0.0032 31.5 7.2 86 274-366 78-172 (280)
178 TIGR00677 fadh2_euk methylenet 31.6 98 0.0021 32.9 5.8 71 272-354 147-226 (281)
179 cd02809 alpha_hydroxyacid_oxid 31.6 4.3E+02 0.0093 28.0 10.5 130 268-407 127-287 (299)
180 PRK15108 biotin synthase; Prov 31.5 75 0.0016 34.6 5.1 50 273-323 136-187 (345)
181 PRK12858 tagatose 1,6-diphosph 31.1 87 0.0019 34.5 5.5 52 274-325 110-161 (340)
182 PF04187 DUF399: Protein of un 30.7 36 0.00077 34.6 2.4 20 304-323 86-105 (213)
183 cd08627 PI-PLCc_gamma1 Catalyt 30.5 43 0.00094 35.2 2.9 31 263-294 23-53 (229)
184 PF02126 PTE: Phosphotriestera 30.3 1.3E+02 0.0028 32.6 6.5 63 268-349 36-98 (308)
185 cd08597 PI-PLCc_PRIP_metazoa C 30.3 1E+02 0.0022 33.0 5.7 56 263-322 23-85 (260)
186 cd06591 GH31_xylosidase_XylS X 30.3 2E+02 0.0044 30.8 7.9 88 266-368 20-115 (319)
187 PRK08673 3-deoxy-7-phosphohept 30.1 1.3E+02 0.0028 33.3 6.5 61 263-330 100-165 (335)
188 PF02679 ComA: (2R)-phospho-3- 29.9 71 0.0015 33.9 4.4 89 246-351 65-153 (244)
189 COG0036 Rpe Pentose-5-phosphat 29.6 2.4E+02 0.0052 29.8 8.1 110 268-397 14-131 (220)
190 PLN02540 methylenetetrahydrofo 29.5 1.2E+02 0.0026 35.9 6.5 73 271-354 154-234 (565)
191 TIGR02103 pullul_strch alpha-1 29.3 70 0.0015 39.6 4.8 25 272-296 288-314 (898)
192 TIGR01371 met_syn_B12ind 5-met 28.9 1.5E+02 0.0033 35.9 7.4 83 270-362 575-661 (750)
193 cd07947 DRE_TIM_Re_CS Clostrid 28.6 2.6E+02 0.0055 29.9 8.3 83 274-367 78-176 (279)
194 PF01902 ATP_bind_4: ATP-bindi 28.5 1E+02 0.0023 31.8 5.3 56 561-617 123-181 (218)
195 TIGR03586 PseI pseudaminic aci 28.4 1.3E+02 0.0029 32.9 6.3 70 250-323 1-93 (327)
196 PRK06233 hypothetical protein; 28.3 1.1E+02 0.0024 33.6 5.7 67 270-337 171-249 (372)
197 PTZ00445 p36-lilke protein; Pr 28.1 1.4E+02 0.003 31.6 6.0 59 265-323 24-94 (219)
198 cd08592 PI-PLCc_gamma Catalyti 27.9 50 0.0011 34.7 2.9 57 263-322 23-85 (229)
199 cd00019 AP2Ec AP endonuclease 27.7 1.7E+02 0.0037 29.9 6.7 52 270-323 10-62 (279)
200 COG2019 AdkA Archaeal adenylat 27.7 97 0.0021 32.0 4.7 110 287-414 39-168 (189)
201 TIGR03249 KdgD 5-dehydro-4-deo 27.5 2.8E+02 0.0061 29.3 8.3 110 246-384 72-187 (296)
202 PRK09432 metF 5,10-methylenete 27.4 1.5E+02 0.0033 31.8 6.5 60 276-354 169-241 (296)
203 COG2352 Ppc Phosphoenolpyruvat 27.3 54 0.0012 40.3 3.4 67 266-339 532-612 (910)
204 PRK12677 xylose isomerase; Pro 27.2 1.3E+02 0.0029 33.4 6.1 49 271-324 32-84 (384)
205 PRK13397 3-deoxy-7-phosphohept 27.1 2E+02 0.0043 30.7 7.1 66 263-330 22-87 (250)
206 PRK00957 methionine synthase; 27.0 2.3E+02 0.005 29.9 7.6 80 270-367 144-224 (305)
207 PF12868 DUF3824: Domain of un 26.9 18 0.0004 35.2 -0.4 9 73-81 36-44 (137)
208 COG0620 MetE Methionine syntha 26.9 1.5E+02 0.0031 32.6 6.3 64 270-339 158-227 (330)
209 cd00598 GH18_chitinase-like Th 26.8 2.2E+02 0.0048 27.4 6.9 69 247-319 63-136 (210)
210 PLN02433 uroporphyrinogen deca 26.7 95 0.0021 33.4 4.8 77 274-364 183-262 (345)
211 cd07381 MPP_CapA CapA and rela 26.6 1.8E+02 0.0038 29.4 6.4 58 267-331 159-216 (239)
212 PRK12568 glycogen branching en 26.6 1.5E+02 0.0033 36.0 6.8 59 266-329 265-341 (730)
213 cd03310 CIMS_like CIMS - Cobal 26.5 2.4E+02 0.0052 29.4 7.6 59 270-334 151-211 (321)
214 PRK06520 5-methyltetrahydropte 26.2 1.2E+02 0.0027 33.3 5.6 67 270-337 170-247 (368)
215 TIGR00419 tim triosephosphate 26.1 1.4E+02 0.003 30.7 5.6 45 275-329 73-117 (205)
216 PRK13655 phosphoenolpyruvate c 26.1 2.1E+02 0.0045 33.5 7.5 98 305-408 216-324 (494)
217 PRK11858 aksA trans-homoaconit 26.0 4E+02 0.0086 29.5 9.4 54 272-325 77-134 (378)
218 PRK13210 putative L-xylulose 5 25.9 1.2E+02 0.0027 30.6 5.3 59 270-330 94-154 (284)
219 PF01261 AP_endonuc_2: Xylose 25.6 67 0.0015 30.1 3.1 60 269-330 70-133 (213)
220 COG1856 Uncharacterized homolo 25.6 1.1E+02 0.0023 33.0 4.7 57 273-330 100-161 (275)
221 cd08560 GDPD_EcGlpQ_like_1 Gly 25.5 81 0.0018 34.8 4.1 50 272-325 247-296 (356)
222 PF05378 Hydant_A_N: Hydantoin 25.4 1.4E+02 0.0031 29.6 5.4 45 268-320 132-176 (176)
223 cd06597 GH31_transferase_CtsY 25.4 3.2E+02 0.007 29.7 8.5 63 265-329 19-105 (340)
224 cd00945 Aldolase_Class_I Class 25.2 1.9E+02 0.0042 27.1 6.1 27 268-294 63-89 (201)
225 PF03786 UxuA: D-mannonate deh 25.1 48 0.001 36.9 2.3 51 275-329 16-67 (351)
226 TIGR03679 arCOG00187 arCOG0018 24.7 1.5E+02 0.0033 30.2 5.6 56 561-617 124-182 (218)
227 COG1809 (2R)-phospho-3-sulfola 24.6 1.4E+02 0.003 32.1 5.3 111 187-323 24-135 (258)
228 TIGR00010 hydrolase, TatD fami 24.5 1.9E+02 0.004 28.5 6.0 46 272-330 17-62 (252)
229 cd08629 PI-PLCc_delta1 Catalyt 24.5 1.6E+02 0.0036 31.6 5.9 56 264-322 24-85 (258)
230 cd08625 PI-PLCc_beta3 Catalyti 24.2 1.6E+02 0.0034 31.6 5.7 67 263-330 23-100 (258)
231 PRK09993 C-lysozyme inhibitor; 24.1 57 0.0012 32.7 2.3 29 360-388 106-135 (153)
232 cd03319 L-Ala-DL-Glu_epimerase 24.1 77 0.0017 33.3 3.5 57 265-337 236-293 (316)
233 cd06413 GH25_muramidase_1 Unch 23.9 2E+02 0.0044 28.3 6.2 51 275-332 16-66 (191)
234 cd06589 GH31 The enzymes of gl 23.7 1.9E+02 0.0042 29.9 6.2 71 266-353 20-99 (265)
235 TIGR02026 BchE magnesium-proto 23.6 2.1E+02 0.0046 32.6 7.0 51 274-329 288-345 (497)
236 cd08631 PI-PLCc_delta4 Catalyt 23.5 1.8E+02 0.0038 31.3 6.0 64 263-329 23-95 (258)
237 COG3250 LacZ Beta-galactosidas 23.4 2.5E+02 0.0055 34.6 7.9 46 264-323 315-360 (808)
238 cd03174 DRE_TIM_metallolyase D 23.3 2E+02 0.0044 28.8 6.2 58 273-332 77-141 (265)
239 COG4130 Predicted sugar epimer 23.2 96 0.0021 33.2 3.9 72 242-321 90-165 (272)
240 COG5561 Predicted metal-bindin 23.2 1.8E+02 0.004 27.2 5.2 55 270-331 42-99 (101)
241 PLN02417 dihydrodipicolinate s 23.1 3.3E+02 0.0072 28.6 7.9 93 247-366 69-164 (280)
242 COG2876 AroA 3-deoxy-D-arabino 23.1 1.7E+02 0.0036 32.0 5.7 54 268-321 227-282 (286)
243 PF13200 DUF4015: Putative gly 23.1 1E+03 0.023 26.2 12.1 128 265-428 8-150 (316)
244 TIGR02529 EutJ ethanolamine ut 23.0 2.1E+02 0.0045 29.5 6.2 64 253-328 24-96 (239)
245 cd08212 RuBisCO_large_I Ribulo 22.9 1.5E+02 0.0033 34.0 5.7 52 268-330 224-275 (450)
246 smart00481 POLIIIAc DNA polyme 22.8 2.4E+02 0.0052 22.9 5.4 44 271-325 16-59 (67)
247 cd08594 PI-PLCc_eta Catalytic 22.7 1.9E+02 0.0041 30.6 5.9 66 264-332 24-100 (227)
248 cd08593 PI-PLCc_delta Catalyti 22.6 1.9E+02 0.0042 30.9 6.1 57 263-322 23-85 (257)
249 PRK09121 5-methyltetrahydropte 22.6 1.3E+02 0.0028 32.8 4.9 60 270-337 156-216 (339)
250 PRK03705 glycogen debranching 22.5 1E+02 0.0023 36.7 4.5 51 275-329 184-264 (658)
251 PF01136 Peptidase_U32: Peptid 22.5 80 0.0017 31.5 3.1 22 270-291 2-23 (233)
252 TIGR00674 dapA dihydrodipicoli 22.4 3.7E+02 0.0079 28.2 8.0 114 246-384 65-183 (285)
253 COG2089 SpsE Sialic acid synth 22.2 1.1E+02 0.0023 34.2 4.2 70 250-323 14-106 (347)
254 PF01183 Glyco_hydro_25: Glyco 22.1 2.2E+02 0.0048 27.5 5.9 109 276-407 12-120 (181)
255 COG1060 ThiH Thiamine biosynth 22.0 1.3E+02 0.0028 33.6 4.8 59 271-329 159-221 (370)
256 PF14587 Glyco_hydr_30_2: O-Gl 21.9 3.2E+02 0.0068 31.1 7.8 82 299-414 93-177 (384)
257 cd00530 PTE Phosphotriesterase 21.9 2.1E+02 0.0046 29.3 6.1 57 266-332 28-84 (293)
258 PF07775 PaRep2b: PaRep2b prot 21.9 2.5E+02 0.0055 32.9 7.1 87 227-323 181-273 (512)
259 cd07491 Peptidases_S8_7 Peptid 21.7 4.3E+02 0.0092 27.3 8.2 72 267-347 86-159 (247)
260 PLN02389 biotin synthase 21.7 6.3E+02 0.014 28.3 10.0 54 267-323 116-169 (379)
261 TIGR02100 glgX_debranch glycog 21.5 1.5E+02 0.0033 35.5 5.5 63 270-332 182-271 (688)
262 cd07937 DRE_TIM_PC_TC_5S Pyruv 21.4 2.6E+02 0.0056 29.4 6.7 51 269-329 90-140 (275)
263 COG1312 UxuA D-mannonate dehyd 21.3 97 0.0021 34.7 3.6 51 275-329 15-65 (362)
264 PRK05437 isopentenyl pyrophosp 21.1 5.6E+02 0.012 28.2 9.4 36 370-407 278-321 (352)
265 COG1523 PulA Type II secretory 21.0 2E+02 0.0043 34.9 6.4 98 234-344 173-302 (697)
266 TIGR00542 hxl6Piso_put hexulos 20.9 1.8E+02 0.0039 29.8 5.3 59 270-330 94-154 (279)
267 PRK14705 glycogen branching en 20.9 1.7E+02 0.0037 37.6 6.0 53 270-329 765-835 (1224)
268 TIGR03234 OH-pyruv-isom hydrox 20.7 2.2E+02 0.0048 28.6 5.8 57 270-330 84-144 (254)
269 PRK04175 rpl7ae 50S ribosomal 20.6 2.3E+02 0.0051 26.8 5.6 44 559-611 33-76 (122)
270 PRK09997 hydroxypyruvate isome 20.5 2.8E+02 0.006 28.2 6.5 56 270-330 85-145 (258)
271 PRK14507 putative bifunctional 20.4 3.5E+02 0.0076 36.1 8.7 66 267-333 755-833 (1693)
272 PRK00042 tpiA triosephosphate 20.4 1.5E+02 0.0032 31.4 4.6 45 275-329 78-126 (250)
273 cd06564 GH20_DspB_LnbB-like Gl 20.4 8.9E+02 0.019 26.0 10.5 115 265-407 12-155 (326)
No 1
>PLN02705 beta-amylase
Probab=100.00 E-value=1.2e-256 Score=2052.58 Aligned_cols=636 Identities=79% Similarity=1.319 Sum_probs=615.0
Q ss_pred CCCCCCCCCCcchhhhhHHHHHHhhcCC----CCCCCCCCCCCCCccchhHHHHhHHHHHhhhhHHHHHHhhhhhcCCCC
Q 005715 27 TQSHSRRPRGFAATAAAAAAAAAANNNS----NSNNNNASSGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFP 102 (681)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~e~e~~~~rer~rrai~~~i~~glr~~g~~~ 102 (681)
+|||+|||||||||||||++++..+++. ..+|++||+|+++|+||+||||||+|||||||||+|||+|||+||||+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~rer~rrai~~ki~aglr~~g~~~ 113 (681)
T PLN02705 34 NQPQSRRPRGFAATAAAAAIAPTENDVNNGNISSGGGGGGGGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFP 113 (681)
T ss_pred CCCccCCCcchhhhhcccccCCCcccccCccccCCCCCCCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 4589999999999999998876655544 455666667788999999999999999999999999999999999999
Q ss_pred CCcccChHHHHHHHHHHhCceECCCCCceeccCcccCCccchhhhhhhhcccccccccccccCccc---ccccccccccc
Q 005715 103 LPARADMNDVLAALAREAGWTVEPDGTTYRLSNQSQSHHHLHQQMAAAAATTTAAFPVRSVESPLS---VKNCSVKASVE 179 (681)
Q Consensus 103 lp~~~d~n~v~~al~~~ag~~v~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 179 (681)
||+|||+||||||||+||||+||+|||||| + +++|+++|+|+|+|||||++ |++|+.+...+
T Consensus 114 lp~~~d~n~vl~al~~eagw~v~~dg~~yr-----------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (681)
T PLN02705 114 LPARADMNDVLAALAREAGWTVEADGTTYR-----------Q----SPQPSHVGSFPVRSVESPLSSSTLKNCAKAAIES 178 (681)
T ss_pred CCcccchHHHHHHHHHhcCcEEcCCCCccc-----------C----CCCCcccccccccCccCcchhhhHHHhhhhhhcc
Confidence 999999999999999999999999999999 4 78899999999999999997 99999999999
Q ss_pred cCCccccccCCCCCCCccccccccCC-CCCCCCcCCCCCCccchhhhhhhhhhhcccCCCCcCcCCCCCCccEEEEeece
Q 005715 180 CQPSVLRIDESLSPASFDSVVIPERD-SRGGEFNASTSPINNSVECLEADQLIQDVRAGEHEDDFTGTPYIPVYVMLANH 258 (681)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpVyVMLPLd 258 (681)
||+|+|||||||||.|||||||+|++ +++|+|+ ++||| +|++|++++|++++++++.++++|+.+++||||||||||
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VpVyVMLPLd 256 (681)
T PLN02705 179 QQHSVLRIDESLSPVSLDSVVIAESDHPGNGRYT-STSPI-TSVGCLEADQLIQDVHSGEHENDFTETFYVPVYVMLAVG 256 (681)
T ss_pred cccchhccccccCcccccceeeeccccccccccc-ccCcc-ccccccchhhhhhccCCCCCccCcCCCCceeEEEEeecc
Confidence 99999999999999999999999999 8999999 99999 999999999999999999999999999999999999999
Q ss_pred eecCCccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCC
Q 005715 259 VINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSG 338 (681)
Q Consensus 259 ~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD 338 (681)
+|+++|+|+++++|+++|++||++|||||||||||||||+++|++|||++|++||+|||++|||||||||||||||||||
T Consensus 257 ~V~~~~~l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD 336 (681)
T PLN02705 257 IINNFCQLVDPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLKLQVVMAFHEYGGNASG 336 (681)
T ss_pred eeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCChhHHhhhccCCCeEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHHhhhhccceEEEEecc
Q 005715 339 DAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGL 418 (681)
Q Consensus 339 ~~~IpLP~WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g~~vI~eI~VGL 418 (681)
+|+||||+||+++|++|||||||||+|+||+||||||+|++|||+||||||+|+|||+|||++|++||+++||+||+|||
T Consensus 337 ~~~IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGL 416 (681)
T PLN02705 337 NVMISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFVEGLITAVEIGL 416 (681)
T ss_pred cccccCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhccCCceeEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred cCCcCCCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHHhCCcCcCCCCCCCCCCCCCCCCCcccccCCcccccccc
Q 005715 419 GPSGELKYPSLSERMGWRYPGIGEFQCYDRYLQQSLRKAAKLRGHSFWARGPDNAGQYNSLPHETGFFCERGDYDSYYGR 498 (681)
Q Consensus 419 GPaGELRYPSYp~~~GW~~PGiGEFQCYDky~~a~lr~aA~~~Gn~~WG~gP~nAg~YNs~P~~t~FF~~gG~w~S~YGk 498 (681)
||||||||||||+..||+||||||||||||||+++|+++|+++||++||+||||||+||++|++|+||+++|+|+|+|||
T Consensus 417 GP~GELRYPSYp~~~gW~fPGiGEFQCYDkymla~Lk~aA~a~GhpeWG~gP~dAg~YN~~P~~tgFF~~~G~w~S~YGk 496 (681)
T PLN02705 417 GASGELKYPSFPERMGWIYPGIGEFQCYDKYSQQNLRKAAKSRGHSFWARGPDNAGQYNSRPHETGFFCERGDYDSYYGR 496 (681)
T ss_pred CCCccccCCCCcccCCCCCCCcceeeeccHHHHHHHHHHHHHhCcHhhccCCCCccccCCCCCCCCCCCCCCCcccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred chHHHhHHHHHhHHHHHHHHHHHhcCCCceeeEeceeeeccCCCCChhhhhccccCCCCCCChHHHHHHHhhcCcEEEEe
Q 005715 499 FFLNWYAQTLIDHADNVLSLASLAFEETKIIVKVPGVYWWYKTASHAAELTAGYYNPSNQDGYAPVFEVLKKHSVTMKFV 578 (681)
Q Consensus 499 FFLsWYS~~Ll~HGDrVL~~A~~vF~g~~l~aKV~GIHWwY~t~SHaAELTAGYYNt~~rDGY~pIa~mfarh~v~l~FT 578 (681)
|||+|||++||+||||||++|+.+|++++|++|||||||||+|+||||||||||||+++||||.||++|||||+|+|+||
T Consensus 497 FFLsWYS~~Ll~HGDrVLs~A~~vF~~~~LsaKVaGIHWWY~t~SHAAELTAGYYNt~~rDGY~pIa~mfarh~~~l~FT 576 (681)
T PLN02705 497 FFLHWYSQLLIDHADNVLSLANLAFEETKIIVKIPAVYWWYKTASHAAELTAGYYNPTNQDGYSPVFETLKKHSVTVKFV 576 (681)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCCCCCchhhhccccccCCCcccHHHHHHHHHHcCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ee-cCCCC--CCCCCCChHHHHHHHHHHHHhcCCccccccccccCChhhHHHHHHhcCCCCCCCCCcccceEeccCCccc
Q 005715 579 CA-VPSLQ--DQEALADPEGLSWQVLNLAWDRGLAVAGENALSCYDREGCMRVVEMAKPRNDPDRRHFSFFMYQQPSSLL 655 (681)
Q Consensus 579 Cl-M~d~e--~~~a~s~Pe~Lv~QV~~aA~~~Gv~laGENAL~~~d~~ay~qI~~~a~~~~~~~~~~~~~FTyLRm~~~l 655 (681)
|+ |.+.+ +.+++|+||+||+||+++||++||+|+|||||++||.++|+||++|++++++++..+|++||||||++.|
T Consensus 577 C~eMe~~d~~~~~a~s~PE~LV~QV~~aA~~~Gv~vaGENAL~~~D~~ay~qI~~na~~~~~~~~~~~~~FTYlRm~~~l 656 (681)
T PLN02705 577 CSGLQMSPNENDEALADPEGLSWQVLNSAWDRGLTVAGENAITCYDREGCMRLIEIAKPRNHPDHYHFSFFVYQQPSPLV 656 (681)
T ss_pred eccccccCCCCCccCCCHHHHHHHHHHHHHHcCCceeecccccccCHHHHHHHHHHhcccCCCcccceeeeEEecCchHh
Confidence 99 77654 4789999999999999999999999999999999999999999999999888878889999999999999
Q ss_pred CCCCCcchHHHHHHHhccCCCCCC
Q 005715 656 QGTICFSDLGYVIKCMHGDIAGDL 679 (681)
Q Consensus 656 f~~~n~~~F~~FVr~M~~~~~~~~ 679 (681)
|+++||++|+.|||+||++.+..+
T Consensus 657 f~~~n~~~F~~FVr~M~~~~~~~~ 680 (681)
T PLN02705 657 QGTTCFPELDYFIKCMHGDIRDKQ 680 (681)
T ss_pred cCcccHHHHHHHHHHhcccccccc
Confidence 999999999999999999877543
No 2
>PLN02905 beta-amylase
Probab=100.00 E-value=7.7e-240 Score=1925.45 Aligned_cols=620 Identities=56% Similarity=0.983 Sum_probs=591.0
Q ss_pred hhcCCCCCCCCCCCCCCCccchhHHHHhHHHHHhhhhHHHHHHhhhhhcCCCCCCcccChHHHHHHHHHHhCceECCCCC
Q 005715 50 ANNNSNSNNNNASSGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEPDGT 129 (681)
Q Consensus 50 ~~~~~~~~~~~~~~g~~~~~~~~e~e~~~~rer~rrai~~~i~~glr~~g~~~lp~~~d~n~v~~al~~~ag~~v~~dg~ 129 (681)
+..+++|||+|+||+.++....|||||||+|||||||||+|||+|||+||||+||+|||+||||||||+||||+||+|||
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~ere~~~~rer~rrai~~~i~~glr~~g~~~lp~~~d~n~v~~~l~~eag~~v~~dg~ 142 (702)
T PLN02905 63 QQSIQEQVGTPGGGGSRRSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGT 142 (702)
T ss_pred HHHHHHhcCCCCCCccCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCCcccchHHHHHHHHHhcCcEEcCCCC
Confidence 44567999999998876655569999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCcccCCccchhhhhhhhcccccccccccccCccc--------------ccccccccccccCCccccccCCCCCCC
Q 005715 130 TYRLSNQSQSHHHLHQQMAAAAATTTAAFPVRSVESPLS--------------VKNCSVKASVECQPSVLRIDESLSPAS 195 (681)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (681)
|||...|+..... ..++.....++|+++|+|||++ |++|++++++.+|+|+ +|++|+|+|
T Consensus 143 ~y~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~d~~~~~~~ 216 (702)
T PLN02905 143 TFPSRSQGTRPAG----GTSAVAATSSSSHLVSQQTPPPSLRGVSSGYRSSVEYNACRMKGVFVPASSP--YDVSPSQSS 216 (702)
T ss_pred cccccCCCCCCCC----CcccccccccccccccccCCcchhcccccccccccccchhhhccccccCCCc--cccccCCCC
Confidence 9996443332111 1134445568899999999883 9999999999999999 799999999
Q ss_pred ccccccccCCCCCCCCcCCCCCCccchhhhhhhhhhhcccCCCCcCcCCCCCCccEEEEeeceeecCCccccCHHHHHHH
Q 005715 196 FDSVVIPERDSRGGEFNASTSPINNSVECLEADQLIQDVRAGEHEDDFTGTPYIPVYVMLANHVINNFCQLVDPELIRQE 275 (681)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpVyVMLPLd~V~~~~~l~~~~~l~~~ 275 (681)
+||||++|++++|++| +||++|++|++++|++ |+++..++.+++.+++||||||||||+|+.+|+|+++++|+++
T Consensus 217 ~~~~~~~~~~~~~~~~----~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~~VpVyVMLPLd~V~~~~~l~~~~al~a~ 291 (702)
T PLN02905 217 ELVVVMGDRGSQNENH----GLIGGSVDAINSKQIL-DIPPKLTERDFAGTPYVPVYVMLPLGVINMKCELADPDGLLKQ 291 (702)
T ss_pred cceeEeeccccccccc----CCccCcccccchhhhh-hhhcccccccccCCCceeEEEEeecceecCCCcccCHHHHHHH
Confidence 9999999999999999 5888999999999888 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhHHhhhccC
Q 005715 276 ISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGN 355 (681)
Q Consensus 276 L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpLP~WV~e~g~~~ 355 (681)
|++||++|||||||||||||||+++|++|||++|++||+|||++|||||||||||||||||||+|+||||+||++++++|
T Consensus 292 L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~IPLP~WV~e~g~~n 371 (702)
T PLN02905 292 LRILKSINVDGVKVDCWWGIVEAHAPQEYNWNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCIPLPHWVAEIGRSN 371 (702)
T ss_pred HHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCHHHHHhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHHhhhhccceEEEEecccCCcCCCCCCCCCCCCC
Q 005715 356 QDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMGW 435 (681)
Q Consensus 356 PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g~~vI~eI~VGLGPaGELRYPSYp~~~GW 435 (681)
||||||||+|+||+||||||+|++|||+||||||+|+|||+|||++|++||+++||+||+|||||||||||||||+..||
T Consensus 372 PDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~g~I~eI~VGLGPaGELRYPSYp~s~GW 451 (702)
T PLN02905 372 PDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFEDGVISMVEVGLGPCGELRYPSCPVKHGW 451 (702)
T ss_pred CCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCCccccCCCCcCcCCC
Confidence 99999999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred ccCCCcccccccHHHHHHHHHHHHHhCCcCcCCCCCCCCCCCCCCCCCcccccCCccccccccchHHHhHHHHHhHHHHH
Q 005715 436 RYPGIGEFQCYDRYLQQSLRKAAKLRGHSFWARGPDNAGQYNSLPHETGFFCERGDYDSYYGRFFLNWYAQTLIDHADNV 515 (681)
Q Consensus 436 ~~PGiGEFQCYDky~~a~lr~aA~~~Gn~~WG~gP~nAg~YNs~P~~t~FF~~gG~w~S~YGkFFLsWYS~~Ll~HGDrV 515 (681)
+||||||||||||||+++|+++|+++||++||+||||||+||++|++|+||+++|+|+|+||||||+|||++||+|||||
T Consensus 452 ~fPGiGEFQCYDKymla~Lk~aA~a~GhpeWG~gP~dAG~YN~~P~~TgFF~~~Gsw~S~YGkFFLsWYS~~Ll~HGDrV 531 (702)
T PLN02905 452 RYPGIGEFQCYDQYLLKSLRKAAEARGHLFWARGPDNTGSYNSQPHETGFFCDGGDYDGYYGRFFLNWYSQVLVDHGDRV 531 (702)
T ss_pred CCCCcceeeeccHHHHHHHHHHHHHhCcHhhccCCCCCCccCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceeeEeceeeeccCCCCChhhhhccccCCCCCCChHHHHHHHhhcCcEEEEeee-cCCCCCC----CCC
Q 005715 516 LSLASLAFEETKIIVKVPGVYWWYKTASHAAELTAGYYNPSNQDGYAPVFEVLKKHSVTMKFVCA-VPSLQDQ----EAL 590 (681)
Q Consensus 516 L~~A~~vF~g~~l~aKV~GIHWwY~t~SHaAELTAGYYNt~~rDGY~pIa~mfarh~v~l~FTCl-M~d~e~~----~a~ 590 (681)
|++|+.+|++++|++|||||||||+|+||||||||||||+++||||.||++|||||+|+|+|||| |+|.+++ +++
T Consensus 532 Ls~A~~vF~g~~LaaKVaGIHWWY~t~SHAAELTAGYYNt~~rDGY~pIa~mfarh~~~l~FTClEM~D~eqp~~~~~a~ 611 (702)
T PLN02905 532 LSLAKLAFEGTCIAAKLPGVHWWYKTASHAAELTAGFYNPCNRDGYAAIASMLKKHGAALNFVCGEVQMLNRPDDFSEAL 611 (702)
T ss_pred HHHHHHhcCCCeEEEEeccccccCCCCCchHhhccccccCCCcccHHHHHHHHHHcCCeEEEEecccccCCCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9998763 789
Q ss_pred CChHHHHHHHHHHHHhcCCccccccccccCChhhHHHHHHhcCCCCCCCCCcccceEeccCCcccCCCCCcchHHHHHHH
Q 005715 591 ADPEGLSWQVLNLAWDRGLAVAGENALSCYDREGCMRVVEMAKPRNDPDRRHFSFFMYQQPSSLLQGTICFSDLGYVIKC 670 (681)
Q Consensus 591 s~Pe~Lv~QV~~aA~~~Gv~laGENAL~~~d~~ay~qI~~~a~~~~~~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~ 670 (681)
|+||+||+||+++||++||+|+|||||++||.++|+||+++++++++++..+|++||||||++.||+++||++|++|||+
T Consensus 612 ssPE~LV~QV~~aA~~~GV~vaGENAL~r~D~~ay~qI~~na~~~~~~~~~~l~~FTYLRm~~~lf~~~nf~~F~~FVr~ 691 (702)
T PLN02905 612 GDPEGLAWQVLNAAWDVDTPVASENSLPCHDRVGYNKILENAKPLNDPDGRHFSSFTYLRLSPLLMERHNFVEFERFVKR 691 (702)
T ss_pred CCHHHHHHHHHHHHHHhCCceeccccccccCHHHHHHHHHHhhcccCCccCceeeeEEecCchhhcCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998877777789999999999999999999999999999
Q ss_pred hccCCCCCCC
Q 005715 671 MHGDIAGDLL 680 (681)
Q Consensus 671 M~~~~~~~~~ 680 (681)
||++..+|..
T Consensus 692 M~~~~~~~~~ 701 (702)
T PLN02905 692 MHGEAVLDLQ 701 (702)
T ss_pred hcccccccCC
Confidence 9999888764
No 3
>PLN00197 beta-amylase; Provisional
Probab=100.00 E-value=4.5e-186 Score=1492.91 Aligned_cols=438 Identities=39% Similarity=0.733 Sum_probs=421.6
Q ss_pred cCcCCCCCCccEEEEeeceeecCCccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHc
Q 005715 240 EDDFTGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREF 319 (681)
Q Consensus 240 ~~~~~~~~~vpVyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~ 319 (681)
...-...++||||||||||+|+++|+|+++++|+++|++||++|||||||||||||||+++|++|||++|++||+|||++
T Consensus 97 ~~~~~~~~~vpvyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~ 176 (573)
T PLN00197 97 GGTKEKGKGVPVYVMMPLDSVTMGNTVNRRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRH 176 (573)
T ss_pred ccccccCCCeeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHc
Confidence 34445678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEeeccCCCCCCCccccCChhHHhhhccCCCeEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHH
Q 005715 320 NLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFR 399 (681)
Q Consensus 320 GLKvqvVmSFHqCGGNVGD~~~IpLP~WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr 399 (681)
|||||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||+|++|||+||||||+|+|||+|||
T Consensus 177 GLKlq~VmSFHqCGGNVGD~~~IpLP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr 256 (573)
T PLN00197 177 GLKVQAVMSFHQCGGNVGDSCTIPLPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFR 256 (573)
T ss_pred CCeEEEEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccceEEEEecccCCcCCCCCCCCCCCC-CccCCCcccccccHHHHHHHHHHHHHhCCcCcCC-CCCCCCCCC
Q 005715 400 TEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMG-WRYPGIGEFQCYDRYLQQSLRKAAKLRGHSFWAR-GPDNAGQYN 477 (681)
Q Consensus 400 ~~F~~~~g~~vI~eI~VGLGPaGELRYPSYp~~~G-W~~PGiGEFQCYDky~~a~lr~aA~~~Gn~~WG~-gP~nAg~YN 477 (681)
++|++||+ ++|+||+|||||||||||||||+..| |+||||||||||||||+++|+++|+++||++||+ ||||||+||
T Consensus 257 ~~F~~~l~-~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDkyml~~L~~aA~~~G~p~WG~~gP~dAg~Yn 335 (573)
T PLN00197 257 DNFKHLLG-DTIVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAEAAGKPEWGSTGPTDAGHYN 335 (573)
T ss_pred HHHHHHhc-CceeEEEeccCcCccccCCCCcCcCCCcCCCCccceeechHHHHHHHHHHHHHhCCHhhcCCCCCCccccC
Confidence 99999998 69999999999999999999999888 9999999999999999999999999999999995 899999999
Q ss_pred CCCCCCcccc-cCCccccccccchHHHhHHHHHhHHHHHHHHHHHhcCC--CceeeEeceeeeccCCCCChhhhhccccC
Q 005715 478 SLPHETGFFC-ERGDYDSYYGRFFLNWYAQTLIDHADNVLSLASLAFEE--TKIIVKVPGVYWWYKTASHAAELTAGYYN 554 (681)
Q Consensus 478 s~P~~t~FF~-~gG~w~S~YGkFFLsWYS~~Ll~HGDrVL~~A~~vF~g--~~l~aKV~GIHWwY~t~SHaAELTAGYYN 554 (681)
+.|++|+||+ +||+|+|+||||||+|||++||+||||||++|+.+|++ ++|++|||||||||+|+||||||||||||
T Consensus 336 ~~P~~t~FF~~~gG~w~S~YG~FFL~WYS~~Ll~HGDrVL~~A~~~F~g~~v~l~aKVaGIHWwY~t~SHAAELTAGyYN 415 (573)
T PLN00197 336 NWPEDTRFFKKEGGGWNSPYGEFFLSWYSQMLLDHGERILSSAKSIFENTGVKISVKIAGIHWHYGTRSHAPELTAGYYN 415 (573)
T ss_pred CCCCCCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeccceeecCCCCchHhhcccccc
Confidence 9999999999 57899999999999999999999999999999999985 68999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHhhcCcEEEEeee-cCCCCC-CCCCCChHHHHHHHHHHHHhcCCccccccccccCChhhHHHHHHhc
Q 005715 555 PSNQDGYAPVFEVLKKHSVTMKFVCA-VPSLQD-QEALADPEGLSWQVLNLAWDRGLAVAGENALSCYDREGCMRVVEMA 632 (681)
Q Consensus 555 t~~rDGY~pIa~mfarh~v~l~FTCl-M~d~e~-~~a~s~Pe~Lv~QV~~aA~~~Gv~laGENAL~~~d~~ay~qI~~~a 632 (681)
+++||||+||++|||||+|+|+|||| |+|.++ ++++|+||+||+||+++||++||+|+|||||+|||.++|+||++++
T Consensus 416 t~~rDGY~~Ia~mfarh~~~l~FTClEM~D~eqp~~a~s~PE~Lv~QV~~aA~~~Gv~vaGENAL~r~D~~~~~qI~~~~ 495 (573)
T PLN00197 416 TRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVRQVALATREAEVPLAGENALPRYDDYAHEQILQAS 495 (573)
T ss_pred CCCcccHHHHHHHHHHcCCeEEEEecCcccCCCCccccCCHHHHHHHHHHHHHHcCCcEeeeccccccChhHHHHHHHhc
Confidence 99999999999999999999999999 999987 6799999999999999999999999999999999999999999998
Q ss_pred CCCCC--CCCCcccceEeccCCcccCCCCCcchHHHHHHHhccCCCCC
Q 005715 633 KPRND--PDRRHFSFFMYQQPSSLLQGTICFSDLGYVIKCMHGDIAGD 678 (681)
Q Consensus 633 ~~~~~--~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~~~ 678 (681)
+...+ +...++++||||||++.||+++||++|++|||+||++...+
T Consensus 496 ~~~~~~~~~~~~l~~FTYlRm~~~lf~~~n~~~F~~FVr~M~~~~~~~ 543 (573)
T PLN00197 496 SLNIDGNSEDREMCAFTYLRMNPHLFQPDNWRRFVAFVKKMKEGKDSH 543 (573)
T ss_pred ccccCCCcccCceeeEEEeCCChHHcChhhHHHHHHHHHHhcCCCCCC
Confidence 76542 23467999999999999999999999999999999987754
No 4
>PLN02803 beta-amylase
Probab=100.00 E-value=1.1e-185 Score=1486.35 Aligned_cols=429 Identities=42% Similarity=0.792 Sum_probs=417.5
Q ss_pred CCCCCccEEEEeeceeecCCccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcE
Q 005715 244 TGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (681)
Q Consensus 244 ~~~~~vpVyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKv 323 (681)
...++||||||||||+|+++|+|+++++|+++|++||++|||||||||||||||+++|++|||++|++||+|||++||||
T Consensus 81 ~~~~~vpvyVMlPLd~V~~~~~~~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKl 160 (548)
T PLN02803 81 KNDSGVPVFVMLPLDTVTMGGNLNKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKL 160 (548)
T ss_pred ccCCceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeE
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeccCCCCCCCccccCChhHHhhhccCCCeEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHH
Q 005715 324 QVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFD 403 (681)
Q Consensus 324 qvVmSFHqCGGNVGD~~~IpLP~WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~ 403 (681)
|||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||+|+|||+|||++|+
T Consensus 161 q~vmSFHqCGGNVGD~~~IpLP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~ 240 (548)
T PLN02803 161 QVVMSFHQCGGNVGDSCSIPLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFK 240 (548)
T ss_pred EEEEEecccCCCCCCcccccCCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccceEEEEecccCCcCCCCCCCCCCCC-CccCCCcccccccHHHHHHHHHHHHHhCCcCcCC-CCCCCCCCCCCCC
Q 005715 404 DLFVAGLICAVEIGLGPSGELKYPSLSERMG-WRYPGIGEFQCYDRYLQQSLRKAAKLRGHSFWAR-GPDNAGQYNSLPH 481 (681)
Q Consensus 404 ~~~g~~vI~eI~VGLGPaGELRYPSYp~~~G-W~~PGiGEFQCYDky~~a~lr~aA~~~Gn~~WG~-gP~nAg~YNs~P~ 481 (681)
+|++ +||+||+|||||||||||||||+..| |+||||||||||||||+++||++|+++||++||+ ||||||+||++|+
T Consensus 241 ~~l~-~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~aA~~~G~p~WG~~gP~dAg~Yn~~P~ 319 (548)
T PLN02803 241 DYLG-GVIAEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLEASAEAIGKKDWGRGGPHDAGEYKQFPE 319 (548)
T ss_pred HHhc-CceEEEEeccccCccccCCCCcCcCCCccCCCccceeeccHHHHHHHHHHHHHhCCHhhccCCCCCcCcCCCCCC
Confidence 9998 79999999999999999999999888 9999999999999999999999999999999996 8999999999999
Q ss_pred CCcccccCCccccccccchHHHhHHHHHhHHHHHHHHHHHhcCCC--ceeeEeceeeeccCCCCChhhhhccccCCCCCC
Q 005715 482 ETGFFCERGDYDSYYGRFFLNWYAQTLIDHADNVLSLASLAFEET--KIIVKVPGVYWWYKTASHAAELTAGYYNPSNQD 559 (681)
Q Consensus 482 ~t~FF~~gG~w~S~YGkFFLsWYS~~Ll~HGDrVL~~A~~vF~g~--~l~aKV~GIHWwY~t~SHaAELTAGYYNt~~rD 559 (681)
+|+||+++|+|+|+||||||+|||++||+||||||++|+.+|+++ +|++|||||||||+|+||||||||||||+++||
T Consensus 320 ~t~FF~~~G~~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwY~t~SHaAElTAGyYNt~~rd 399 (548)
T PLN02803 320 ETGFFRRDGTWNTEYGQFFLEWYSGKLLEHGDRILAAAEGIFQGTGAKLSGKVAGIHWHYRTRSHAAELTAGYYNTRNHD 399 (548)
T ss_pred CCCCCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCceEEEEeceeeeecCCCCchhhhccccccCCCcc
Confidence 999999989999999999999999999999999999999999865 899999999999999999999999999999999
Q ss_pred ChHHHHHHHhhcCcEEEEeee-cCCCCC-CCCCCChHHHHHHHHHHHHhcCCccccccccccCChhhHHHHHHhcCCCCC
Q 005715 560 GYAPVFEVLKKHSVTMKFVCA-VPSLQD-QEALADPEGLSWQVLNLAWDRGLAVAGENALSCYDREGCMRVVEMAKPRND 637 (681)
Q Consensus 560 GY~pIa~mfarh~v~l~FTCl-M~d~e~-~~a~s~Pe~Lv~QV~~aA~~~Gv~laGENAL~~~d~~ay~qI~~~a~~~~~ 637 (681)
||.||++|||||+|+|+|||| |+|.++ .+++|+||+||+||+++||++||+|+|||||++||.++|+||+++++++..
T Consensus 400 GY~~Ia~mf~rh~~~l~FTClEM~D~eqp~~~~s~Pe~Lv~Qv~~aa~~~Gv~~aGENAL~~~d~~~~~qi~~~~~~~~~ 479 (548)
T PLN02803 400 GYLPIARMFSKHGVVLNFTCMEMRDGEQPEHANCSPEGLVRQVKMATRTAGTELAGENALERYDSAAFAQVVATSRSDSG 479 (548)
T ss_pred cHHHHHHHHHHcCCeEEEEecCcccCCCCccccCCHHHHHHHHHHHHHHcCCceeeeccccccCHHHHHHHHHhhccccc
Confidence 999999999999999999999 999987 679999999999999999999999999999999999999999999986432
Q ss_pred CCCCcccceEeccCCcccCCCCCcchHHHHHHHhccCCC
Q 005715 638 PDRRHFSFFMYQQPSSLLQGTICFSDLGYVIKCMHGDIA 676 (681)
Q Consensus 638 ~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~ 676 (681)
.+|++||||||++.||+++||++|++|||+||++..
T Consensus 480 ---~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~ 515 (548)
T PLN02803 480 ---NGLTAFTYLRMNKRLFEGDNWRQLVEFVKNMSEGGR 515 (548)
T ss_pred ---CceeeeEEecCChHHcChhhHHHHHHHHHHhcCccc
Confidence 369999999999999999999999999999998755
No 5
>PLN02801 beta-amylase
Probab=100.00 E-value=6.9e-186 Score=1482.61 Aligned_cols=431 Identities=45% Similarity=0.845 Sum_probs=418.7
Q ss_pred CCCCccEEEEeeceeecCCccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEE
Q 005715 245 GTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (681)
Q Consensus 245 ~~~~vpVyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvq 324 (681)
..++||||||||||+|+++|+|+++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||++|||||
T Consensus 12 ~~~~vpvyVMlPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKlq 91 (517)
T PLN02801 12 LANYVPVYVMLPLGVVTADNVLEDEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKIQ 91 (517)
T ss_pred cCCceeEEEeeecceecCCCccCCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeccCCCCCCCccccCChhHHhhhccCCCeEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHHh
Q 005715 325 VVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDD 404 (681)
Q Consensus 325 vVmSFHqCGGNVGD~~~IpLP~WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~ 404 (681)
||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||+|+|||+|||++|++
T Consensus 92 ~vmSFHqCGGNVGD~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~ 171 (517)
T PLN02801 92 AIMSFHQCGGNVGDAVNIPIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMAD 171 (517)
T ss_pred EEEEecccCCCCCCcccccCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccceEEEEecccCCcCCCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHHhCCcCcCCCCCCCCCCCCCCCCCc
Q 005715 405 LFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQCYDRYLQQSLRKAAKLRGHSFWARGPDNAGQYNSLPHETG 484 (681)
Q Consensus 405 ~~g~~vI~eI~VGLGPaGELRYPSYp~~~GW~~PGiGEFQCYDky~~a~lr~aA~~~Gn~~WG~gP~nAg~YNs~P~~t~ 484 (681)
|++++||+||+|||||||||||||||++.||+||||||||||||||+++||++|+++||++||. |||||+||++|++|+
T Consensus 172 ~l~~~~I~eI~VGlGP~GELRYPSYp~~~gW~fpGiGEFQCYDky~~~~l~~aA~~~G~p~Wg~-P~dag~Yn~~P~~t~ 250 (517)
T PLN02801 172 FLEAGVIIDIEVGLGPAGELRYPSYPETQGWVFPGIGEFQCYDKYLKADFKEAATEAGHPEWEL-PDDAGEYNDTPEDTG 250 (517)
T ss_pred hccCCeeEEEEEcccccccccCCCCcCCCCCCCCCcceeeeccHHHHHHHHHHHHhcCCcccCC-CCCCCcccCCCCCCC
Confidence 9988899999999999999999999999999999999999999999999999999999999995 999999999999999
Q ss_pred ccccCCccccccccchHHHhHHHHHhHHHHHHHHHHHhcCCC--ceeeEeceeeeccCCCCChhhhhccccCCCCCCChH
Q 005715 485 FFCERGDYDSYYGRFFLNWYAQTLIDHADNVLSLASLAFEET--KIIVKVPGVYWWYKTASHAAELTAGYYNPSNQDGYA 562 (681)
Q Consensus 485 FF~~gG~w~S~YGkFFLsWYS~~Ll~HGDrVL~~A~~vF~g~--~l~aKV~GIHWwY~t~SHaAELTAGYYNt~~rDGY~ 562 (681)
||+++|+|+|+||||||+|||++||+||||||++|+++|+++ +|++|||||||||+|+||||||||||||+++||||.
T Consensus 251 FF~~~G~~~s~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKvaGIHWwY~t~SHaAElTAGyYN~~~rDGY~ 330 (517)
T PLN02801 251 FFKSNGTYLTEEGKFFLTWYSNKLLLHGDQILDEANKAFLGCKVKLAAKVSGIHWWYKHHSHAAELTAGYYNLKGRDGYR 330 (517)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEeceeeeecCCCCchHhhccccccCCCccchH
Confidence 999999999999999999999999999999999999999875 899999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcEEEEeee-cCCCCC-CCCCCChHHHHHHHHHHHHhcCCccccccccccCChhhHHHHHHhcCCCC----
Q 005715 563 PVFEVLKKHSVTMKFVCA-VPSLQD-QEALADPEGLSWQVLNLAWDRGLAVAGENALSCYDREGCMRVVEMAKPRN---- 636 (681)
Q Consensus 563 pIa~mfarh~v~l~FTCl-M~d~e~-~~a~s~Pe~Lv~QV~~aA~~~Gv~laGENAL~~~d~~ay~qI~~~a~~~~---- 636 (681)
|||+|||||+|+|+|||| |+|.++ ++++|+||+||+||+++||++||+|+|||||+|||.++|+||++|++++.
T Consensus 331 pIa~m~~rh~~~l~FTClEM~D~eq~~~~~s~PE~Lv~QV~~aa~~~Gv~vaGENAL~~~D~~~y~qi~~~a~~~~~~~~ 410 (517)
T PLN02801 331 PIARMLSRHYGILNFTCLEMRDTEQPAEALSAPQELVQQVLSGAWREGIEVAGENALSRYDRRGYNQILLNARPNGVNKD 410 (517)
T ss_pred HHHHHHHHcCCeEEEeecccccCCCCcccCCCHHHHHHHHHHHHHHcCCcEeeeccccccCHHHHHHHHHHhhhccCCcc
Confidence 999999999999999999 999987 77999999999999999999999999999999999999999999998753
Q ss_pred CCCCCcccceEeccCCcccCCCCCcchHHHHHHHhccCCC
Q 005715 637 DPDRRHFSFFMYQQPSSLLQGTICFSDLGYVIKCMHGDIA 676 (681)
Q Consensus 637 ~~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~ 676 (681)
+++..+|++||||||++.||+++||++|++|||+||++..
T Consensus 411 g~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~~ 450 (517)
T PLN02801 411 GKPKLRMFGVTYLRLSDELLEETNFSLFKTFVRKMHADQD 450 (517)
T ss_pred cccccceeeEEEecCchHhcCcchHHHHHHHHHHhccccc
Confidence 2234579999999999999999999999999999998654
No 6
>PLN02161 beta-amylase
Probab=100.00 E-value=5.7e-183 Score=1459.65 Aligned_cols=430 Identities=37% Similarity=0.705 Sum_probs=414.1
Q ss_pred cCCCCCCccEEEEeeceeecCCc----cccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHH
Q 005715 242 DFTGTPYIPVYVMLANHVINNFC----QLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIR 317 (681)
Q Consensus 242 ~~~~~~~vpVyVMLPLd~V~~~~----~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr 317 (681)
.-...++||||||||||+|+.++ +|+++++|+++|++||++||||||||||||+||+++|++|||++|++||+|||
T Consensus 85 ~~~~~~~vpvyVMlPLD~V~~~~~~~~~v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr 164 (531)
T PLN02161 85 VSSRHKRVPVFVMMPVDTFGIDASGCPKIKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLIS 164 (531)
T ss_pred ccccCCCeeEEEEeecceeccCcccccccCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHH
Confidence 34457899999999999999764 79999999999999999999999999999999999999999999999999999
Q ss_pred HcCCcEEEEEEeeccCCCCCCCccccCChhHHhhhccCCCeEeecCCCCccccceecccCcccccCCCchhHHHHHHHHH
Q 005715 318 EFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRS 397 (681)
Q Consensus 318 ~~GLKvqvVmSFHqCGGNVGD~~~IpLP~WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrS 397 (681)
++|||||||||||||||||||+|+||||+||++++++|||||||||+|+||+||||||+|++|||+||||+|+|+|||+|
T Consensus 165 ~~GLKlq~vmSFHqCGGNvGd~~~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~S 244 (531)
T PLN02161 165 EAGLKLHVALCFHSNMHLFGGKGGISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLS 244 (531)
T ss_pred HcCCeEEEEEEecccCCCCCCccCccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccceEEEEecccCCcCCCCCCCCCCCC-CccCCCcccccccHHHHHHHHHHHHHhCCcCcC-CCCCCCCC
Q 005715 398 FRTEFDDLFVAGLICAVEIGLGPSGELKYPSLSERMG-WRYPGIGEFQCYDRYLQQSLRKAAKLRGHSFWA-RGPDNAGQ 475 (681)
Q Consensus 398 Fr~~F~~~~g~~vI~eI~VGLGPaGELRYPSYp~~~G-W~~PGiGEFQCYDky~~a~lr~aA~~~Gn~~WG-~gP~nAg~ 475 (681)
||++|++|++ +||+||+|||||||||||||||+.+| |+||||||||||||||+++||++|+++||++|| .||||||.
T Consensus 245 Fr~~F~~~~~-~~I~eI~VGlGP~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~~A~~~G~p~WG~~gP~dAg~ 323 (531)
T PLN02161 245 FSTKFEPYIG-NVIEEISIGLGPSGELRYPAHPSGDGRWKFPGIGEFQCHDKYMMEDLMAVASQEGKPQWGSRDPPNTGC 323 (531)
T ss_pred HHHHHHHHhc-CceEEEEeccccCccccCCCCcCcCCCccCCCcceeeeccHHHHHHHHHHHHHhCCHhhccCCCCCCcc
Confidence 9999999997 69999999999999999999999877 999999999999999999999999999999999 58999999
Q ss_pred CCCCCCCCccccc-CCccccccccchHHHhHHHHHhHHHHHHHHHHHhcCC--------CceeeEeceeeeccCCCCChh
Q 005715 476 YNSLPHETGFFCE-RGDYDSYYGRFFLNWYAQTLIDHADNVLSLASLAFEE--------TKIIVKVPGVYWWYKTASHAA 546 (681)
Q Consensus 476 YNs~P~~t~FF~~-gG~w~S~YGkFFLsWYS~~Ll~HGDrVL~~A~~vF~g--------~~l~aKV~GIHWwY~t~SHaA 546 (681)
||+.|++|+||++ +|+|+|+||||||+|||++||+||||||++|+.+|++ ++|++|||||||||+|+||||
T Consensus 324 Yn~~P~~t~FF~~~~gs~~S~YG~FFL~WYs~~Ll~HgdrvL~~A~~~F~~~~~~~~~~v~l~aKv~GIHWwY~t~SHaA 403 (531)
T PLN02161 324 YNSFPSGVPFFEEGNDSFLSDYGRFFLEWYSGKLICHADAILAKAADVLRRRQESEKSSVMLVAKIGGIYWWYKTSSHPA 403 (531)
T ss_pred cCCCCCCCCCCcCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcceEEEEeccccccCCCCCchh
Confidence 9999999999996 5789999999999999999999999999999999964 789999999999999999999
Q ss_pred hhhccccCCCCCCChHHHHHHHhhcCcEEEEeee-cCCCCC-CCCCCChHHHHHHHHHHHHhcCCccccccccccCChhh
Q 005715 547 ELTAGYYNPSNQDGYAPVFEVLKKHSVTMKFVCA-VPSLQD-QEALADPEGLSWQVLNLAWDRGLAVAGENALSCYDREG 624 (681)
Q Consensus 547 ELTAGYYNt~~rDGY~pIa~mfarh~v~l~FTCl-M~d~e~-~~a~s~Pe~Lv~QV~~aA~~~Gv~laGENAL~~~d~~a 624 (681)
||||||||+++||||.||++|||||+|+|+|||| |+|.|+ +++.|+||+||+||+++||++||+|+|||||+|||..+
T Consensus 404 ElTAGyYN~~~rDGY~~Ia~m~~rh~~~l~FTClEM~D~eq~~~~~s~Pe~Lv~QV~~aa~~~Gv~~aGENAL~~~D~~~ 483 (531)
T PLN02161 404 ELTAGYYNTALRDGYDPVASVLSRHGAALHIPCLDMADSETPEKYLCSPEGLRQQIHDVSKKWTIHVTGRNTSERFDEMG 483 (531)
T ss_pred hhccccccCCcccchHHHHHHHHHcCceEEEEeccccCCCCCccccCCHHHHHHHHHHHHHHcCCceeecccccccChhH
Confidence 9999999999999999999999999999999999 999987 77899999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCcccceEeccCCcccCCCCCcchHHHHHHHhccCC
Q 005715 625 CMRVVEMAKPRNDPDRRHFSFFMYQQPSSLLQGTICFSDLGYVIKCMHGDI 675 (681)
Q Consensus 625 y~qI~~~a~~~~~~~~~~~~~FTyLRm~~~lf~~~n~~~F~~FVr~M~~~~ 675 (681)
|+||+++++.. ...++++||||||++.||+++||++|++|||+||+++
T Consensus 484 ~~qi~~n~~~~---~~~~l~~FTylRm~~~lf~~~n~~~F~~FVr~M~~~~ 531 (531)
T PLN02161 484 LRQIRENCVQP---NGDTLRSFTFCRMNEKIFRAENWNNFVPFIRQMSADM 531 (531)
T ss_pred HHHHHHHhcCC---CCCceeeEEEEcCChhhcChhhHHHHHHHHHHhhCCC
Confidence 99999999632 2357999999999999999999999999999999863
No 7
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=100.00 E-value=2.1e-163 Score=1287.67 Aligned_cols=389 Identities=52% Similarity=0.957 Sum_probs=334.2
Q ss_pred EEEeeceeecCCccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeec
Q 005715 252 YVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (681)
Q Consensus 252 yVMLPLd~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHq 331 (681)
|||||||+|+++++++ +|+++|++||++||||||||||||+||+++|++|||++|++||+|||++||||||||||||
T Consensus 1 yVmlPLd~v~~~~~~~---~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~Y~~l~~~vr~~GLk~~~vmsfH~ 77 (402)
T PF01373_consen 1 YVMLPLDTVTDDNDWN---ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSGYRELFEMVRDAGLKLQVVMSFHQ 77 (402)
T ss_dssp EEE--TTSSCTTSECH---HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HHHHHHHHHHHHTT-EEEEEEE-S-
T ss_pred CceeeeeeecCCCcHH---HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEeeec
Confidence 8999999999988775 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCccccCChhHHhhhccCCCeEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHHhhhhccce
Q 005715 332 YGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLI 411 (681)
Q Consensus 332 CGGNVGD~~~IpLP~WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g~~vI 411 (681)
|||||||+|+||||+||++++++| ||+||||+|+||+|||| |||+||| +|+|+|||+|||++|++|+ ++|
T Consensus 78 cGgNvgD~~~IpLP~Wv~~~~~~~-di~ytd~~G~rn~E~lS------p~~~grt-~~~Y~dfm~sF~~~f~~~~--~~I 147 (402)
T PF01373_consen 78 CGGNVGDDCNIPLPSWVWEIGKKD-DIFYTDRSGNRNKEYLS------PVLDGRT-LQCYSDFMRSFRDNFSDYL--STI 147 (402)
T ss_dssp BSSSTTSSSEB-S-HHHHHHHHHS-GGEEE-TTS-EEEEEE-------CTBTTBC-HHHHHHHHHHHHHHCHHHH--TGE
T ss_pred CCCCCCCccCCcCCHHHHhccccC-CcEEECCCCCcCcceee------cccCCch-HHHHHHHHHHHHHHHHHHH--hhh
Confidence 999999999999999999999999 99999999999999999 9999999 9999999999999999999 599
Q ss_pred EEEEecccCCcCCCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHH------hCCcCcCC-CCCCCCCCCCCCCCCc
Q 005715 412 CAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQCYDRYLQQSLRKAAKL------RGHSFWAR-GPDNAGQYNSLPHETG 484 (681)
Q Consensus 412 ~eI~VGLGPaGELRYPSYp~~~GW~~PGiGEFQCYDky~~a~lr~aA~~------~Gn~~WG~-gP~nAg~YNs~P~~t~ 484 (681)
+||+|||||||||||||||+.+||+||||||||||||||+++||++|+. ++|++||. +|+|+ ||++|++|+
T Consensus 148 ~~I~vglGP~GELRYPSy~~~~gw~~pgiGeFQcYDk~~~~~l~~~a~~kyg~~~~~~~~Wg~~gp~~~--y~~~P~~t~ 225 (402)
T PF01373_consen 148 TEIQVGLGPAGELRYPSYPESDGWRFPGIGEFQCYDKYMLASLRAAAEAKYGSLGAGNPAWGLSGPHDA--YNSPPEDTG 225 (402)
T ss_dssp EEEEE--SGGGBSS-S-S-GGGTB-TTS-----B-SHHHHHHHHHHHHHHTTCCTCTCTTHTS-SSSGG--TT-SGGGST
T ss_pred eEEEeccCCcceeccCCCCCCCCCcCCCcceeeeccHHHHHHHHHHHHHhhhhhccccccCCCCCCChh--hcCCCCCCC
Confidence 9999999999999999999999999999999999999999999999994 45899994 89998 999999999
Q ss_pred ccccCCccccccccchHHHhHHHHHhHHHHHHHHHHHhcCCC---ceeeEeceeeeccC--CCCChhhhhccccCCCCCC
Q 005715 485 FFCERGDYDSYYGRFFLNWYAQTLIDHADNVLSLASLAFEET---KIIVKVPGVYWWYK--TASHAAELTAGYYNPSNQD 559 (681)
Q Consensus 485 FF~~gG~w~S~YGkFFLsWYS~~Ll~HGDrVL~~A~~vF~g~---~l~aKV~GIHWwY~--t~SHaAELTAGYYNt~~rD 559 (681)
||+++|+|+|+||||||+|||++||+||||||++|+.+|+++ +|++|||||||||+ |+||||||||||||
T Consensus 226 fF~~~G~~~s~YG~fFL~WYs~~L~~HgdrvL~~A~~~F~~~~~v~l~aKv~GIHWwy~~pt~sHaAElTAGyyN----- 300 (402)
T PF01373_consen 226 FFRDNGSWDSPYGKFFLSWYSGMLIDHGDRVLSLARSVFDGTFGVKLSAKVPGIHWWYNSPTRSHAAELTAGYYN----- 300 (402)
T ss_dssp TTSTTCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHS-EEEEEEE---TTTTSTSTTTHHHHHHT-S------
T ss_pred CcccCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecceeeccCCCCCCChHHHhccccC-----
Confidence 999999999999999999999999999999999999999987 89999999999999 88999999999999
Q ss_pred ChHHHHHHHhhcCcEEEEeee-cCCCCCCCCCCChHHHHHHHHHHHHhcCCccccccccccCChhhHHHHHHhcCCCCCC
Q 005715 560 GYAPVFEVLKKHSVTMKFVCA-VPSLQDQEALADPEGLSWQVLNLAWDRGLAVAGENALSCYDREGCMRVVEMAKPRNDP 638 (681)
Q Consensus 560 GY~pIa~mfarh~v~l~FTCl-M~d~e~~~a~s~Pe~Lv~QV~~aA~~~Gv~laGENAL~~~d~~ay~qI~~~a~~~~~~ 638 (681)
|+||++|||||+|+|+|||| |+|.++.+..|+||+||+||+++|+++||+|+|||||++||+++|+||+++++.
T Consensus 301 -Y~~Ia~mf~kh~~~l~fTClEM~d~~~~p~~s~Pe~Lv~QV~~aa~~~Gv~~~GENAL~~~d~~~~~qi~~~~~~---- 375 (402)
T PF01373_consen 301 -YSPIARMFKKHGVTLNFTCLEMRDSEEQPEYSSPEGLVRQVLNAAWRHGVPVAGENALPRYDNGAYNQILENAKG---- 375 (402)
T ss_dssp -SHHHHHHHHTTT-EEEES-TT--GGSGSCGGG-HHHHHHHHHHHHHHTT-EEEEE-SS---SHHHHHHHHHHHTH----
T ss_pred -HHHHHHHHHHcCcEEEEEeccccCCCCCCCCCCHHHHHHHHHHHHHHcCCCEeeeeCccccCHHHHHHHHHHhhc----
Confidence 99999999999999999999 999966666789999999999999999999999999999999999999999984
Q ss_pred CCCcccceEeccCCcccCCCCCcchHHHH
Q 005715 639 DRRHFSFFMYQQPSSLLQGTICFSDLGYV 667 (681)
Q Consensus 639 ~~~~~~~FTyLRm~~~lf~~~n~~~F~~F 667 (681)
.++.+||||||++.||+++||.+|++|
T Consensus 376 --~~~~gFTyLRm~~~lf~~~n~~~F~~F 402 (402)
T PF01373_consen 376 --YNYSGFTYLRMGDVLFEGDNWSRFVRF 402 (402)
T ss_dssp --TTTTSEEES-HCHHHHSHHHHHHHHHH
T ss_pred --cCCCCeEEEccChHhcCcccHHhccCC
Confidence 356679999999999999999999998
No 8
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=100.00 E-value=6.3e-41 Score=314.08 Aligned_cols=130 Identities=39% Similarity=0.546 Sum_probs=114.4
Q ss_pred CCCCCCccchhHHHHhHHHHHhhhhHHHHHHhhhhhcCCCCCCcccChHHHHHHHHHHhCceECCCCCceeccCcccCCc
Q 005715 62 SSGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEPDGTTYRLSNQSQSHH 141 (681)
Q Consensus 62 ~~g~~~~~~~~e~e~~~~rer~rrai~~~i~~glr~~g~~~lp~~~d~n~v~~al~~~ag~~v~~dg~~~~~~~~~~~~~ 141 (681)
+++|.++| |||||||+|||||||||+|||+|||+||||+||+|||+||||||||+||||+||+|||||| ++.+
T Consensus 2 ~~~r~pt~--kErEnnk~RERrRRAIaakIfaGLR~~Gny~Lp~~aD~NeVLkALc~eAGw~Ve~DGTtyr-----~~~~ 74 (150)
T PF05687_consen 2 SGGRRPTW--KERENNKRRERRRRAIAAKIFAGLRAHGNYKLPKHADNNEVLKALCREAGWTVEPDGTTYR-----KGCK 74 (150)
T ss_pred CCcccccH--hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHHhCCEEEccCCCeec-----cCCC
Confidence 45555655 7999999999999999999999999999999999999999999999999999999999999 3333
Q ss_pred cchhhhhhhhcccccccccccccCccc--ccccccccccccCCccccccCCCCCCCccccccccC
Q 005715 142 HLHQQMAAAAATTTAAFPVRSVESPLS--VKNCSVKASVECQPSVLRIDESLSPASFDSVVIPER 204 (681)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (681)
++ ......|.+...+.+|+.. +.+|+...++.++.+.++.+...||.++|++++++.
T Consensus 75 ~~------~~~~~~g~s~~~sp~ss~~~~~~ss~~~sp~~s~~~s~~ss~~pSp~~~d~~~~~~~ 133 (150)
T PF05687_consen 75 PP------EPMEIVGSSASASPCSSYQLSPNSSAFPSPVPSYQPSPSSSSFPSPSSLDSINNSSS 133 (150)
T ss_pred CC------ccccccccCCCCCCcCCCcCCccccCcCCcccccCCCcCCCCCCCCccccccccccc
Confidence 32 3445667777788777754 889999999999999999999999999999999877
No 9
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.75 E-value=3.7e-18 Score=178.70 Aligned_cols=219 Identities=15% Similarity=0.232 Sum_probs=145.6
Q ss_pred CHHHHHHHHHHHHHcCcceEEEe-eeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCCh
Q 005715 268 DPELIRQEISHMKALNVDGVIVN-CWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQ 346 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~vD-VWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpLP~ 346 (681)
+.+.|+++|+.||++|++-|.+. +-|..+|+ .+|+|||+.+++++++++++|||| ||++ .+...|.
T Consensus 8 ~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP-~eG~ydF~~lD~~l~~a~~~Gi~v--iL~~----------~~~~~P~ 74 (374)
T PF02449_consen 8 PEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEP-EEGQYDFSWLDRVLDLAAKHGIKV--ILGT----------PTAAPPA 74 (374)
T ss_dssp -CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-S-BTTB---HHHHHHHHHHHCTT-EE--EEEE----------CTTTS-H
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEechhhccC-CCCeeecHHHHHHHHHHHhccCeE--EEEe----------ccccccc
Confidence 45899999999999999999985 55999999 799999999999999999999998 8888 4667999
Q ss_pred hHHhhhccCCCeEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHHhhhhc-cceEEEEecccCCcCCC
Q 005715 347 WVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEIGLGPSGELK 425 (681)
Q Consensus 347 WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g~-~vI~eI~VGLGPaGELR 425 (681)
|+. +++||++.+|+.|.+...-..... -.-.+.|+++++.|..++...+++ ..|..++|.=.
T Consensus 75 Wl~---~~~Pe~~~~~~~g~~~~~g~~~~~--------~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE------ 137 (374)
T PF02449_consen 75 WLY---DKYPEILPVDADGRRRGFGSRQHY--------CPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNE------ 137 (374)
T ss_dssp HHH---CCSGCCC-B-TTTSBEECCCSTT---------HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCS------
T ss_pred chh---hhcccccccCCCCCcCccCCcccc--------chhHHHHHHHHHHHHHHHHhhccccceEEEEEeccc------
Confidence 998 789999999999987431111110 012689999999999999888773 12444444222
Q ss_pred CCCCCCCCCCccCCCcccccccHHHHHHHHHHHHHhC------CcCcCCCC--CCCCCCCC--CCCCCcccccCCccccc
Q 005715 426 YPSLSERMGWRYPGIGEFQCYDRYLQQSLRKAAKLRG------HSFWARGP--DNAGQYNS--LPHETGFFCERGDYDSY 495 (681)
Q Consensus 426 YPSYp~~~GW~~PGiGEFQCYDky~~a~lr~aA~~~G------n~~WG~gP--~nAg~YNs--~P~~t~FF~~gG~w~S~ 495 (681)
||.+ .||++.+++.|+++++++| |.+||+.- +....+.+ +|..+....+.+
T Consensus 138 ------------~~~~--~~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~----- 198 (374)
T PF02449_consen 138 ------------PGYH--RCYSPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPA----- 198 (374)
T ss_dssp ------------TTCT--S--SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HH-----
T ss_pred ------------cCcC--cCCChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChH-----
Confidence 3333 8999999999999999998 78999732 22234433 444444222111
Q ss_pred cccchHHHhHHHHHhHHHHHHHHHHHhcCCCceeeEecee
Q 005715 496 YGRFFLNWYAQTLIDHADNVLSLASLAFEETKIIVKVPGV 535 (681)
Q Consensus 496 YGkFFLsWYS~~Ll~HGDrVL~~A~~vF~g~~l~aKV~GI 535 (681)
...+|...-+..+.+.-..+..+.+++-++.+|..+.-+.
T Consensus 199 ~~~D~~rF~~~~~~~~~~~~~~~ir~~~p~~~vt~n~~~~ 238 (374)
T PF02449_consen 199 QWLDWYRFQSDRVAEFFRWQADIIREYDPDHPVTTNFMGS 238 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-EEE-EE-TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeCcccc
Confidence 1224555556888888888888888888888888887766
No 10
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=1e-10 Score=132.97 Aligned_cols=154 Identities=21% Similarity=0.343 Sum_probs=123.2
Q ss_pred CHHHHHHHHHHHHHcCcceEEE-eeeeeeeccCCCccccchHHHHH-HHHHHHcCCcEEEEEEeeccCCCCCCCccccCC
Q 005715 268 DPELIRQEISHMKALNVDGVIV-NCWWGIVEGWNPQKYAWSGYREL-FNIIREFNLKVQVVMAFHEYGANDSGDAWISLP 345 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~v-DVWWGiVE~~~p~~YdWsgY~~l-~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpLP 345 (681)
+++.|+.+|++||++|++.|++ .+-|+.+|+ ..|+|||++.++. ++|+.+.||++ ||++ .++-..|
T Consensus 28 p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP-~eG~fdf~~~D~~~l~~a~~~Gl~v--il~t---------~P~g~~P 95 (673)
T COG1874 28 PRETWMDDLRKMKALGLNTVRIGYFAWNLHEP-EEGKFDFTWLDEIFLERAYKAGLYV--ILRT---------GPTGAPP 95 (673)
T ss_pred CHHHHHHHHHHHHHhCCCeeEeeeEEeeccCc-cccccCcccchHHHHHHHHhcCceE--EEec---------CCCCCCc
Confidence 5599999999999999999999 666999999 7999999999999 99999999999 9988 1456699
Q ss_pred hhHHhhhccCCCeEeecCCCCccc----cceecccCcccccCCCchhHHHHHHHHHHHHHHHhh-hhcc-ceEEEEeccc
Q 005715 346 QWVMEIGKGNQDIFFTDREGRRNT----ECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDL-FVAG-LICAVEIGLG 419 (681)
Q Consensus 346 ~WV~e~g~~~PDI~ytDr~G~rn~----E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~-~g~~-vI~eI~VGLG 419 (681)
.|+. +++|+|+.+|..|.+.. |.++.- ...|+++.+...+..+++ ++++ -|...+|.-
T Consensus 96 ~Wl~---~~~PeiL~~~~~~~~~~~g~r~~~~~~------------~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dn- 159 (673)
T COG1874 96 AWLA---KKYPEILAVDENGRVRSDGARENICPV------------SPVYREYLDRILQQIRERLYGNGPAVITWQNDN- 159 (673)
T ss_pred hHHh---cCChhheEecCCCcccCCCcccccccc------------cHHHHHHHHHHHHHHHHHHhccCCceeEEEccC-
Confidence 9999 89999999999987743 333332 237888888877777777 5521 133333333
Q ss_pred CCcCCCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHHhC------CcCcCC
Q 005715 420 PSGELKYPSLSERMGWRYPGIGEFQCYDRYLQQSLRKAAKLRG------HSFWAR 468 (681)
Q Consensus 420 PaGELRYPSYp~~~GW~~PGiGEFQCYDky~~a~lr~aA~~~G------n~~WG~ 468 (681)
.|.|. -||++++++.|+.|++++| |..|++
T Consensus 160 ----------------eY~~~---~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t 195 (673)
T COG1874 160 ----------------EYGGH---PCYCDYCQAAFRLWLKKGYGSLDNLNEAWGT 195 (673)
T ss_pred ----------------ccCCc---cccccccHHHHHHHHHhCcchHHhhhhhhhh
Confidence 33444 5999999999999999998 778874
No 11
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=98.72 E-value=3.5e-08 Score=103.59 Aligned_cols=118 Identities=20% Similarity=0.345 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchH---HHHHHHHHHHcCCcEEEEEEe--eccCCCCCCCccc
Q 005715 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSG---YRELFNIIREFNLKVQVVMAF--HEYGANDSGDAWI 342 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKvqvVmSF--HqCGGNVGD~~~I 342 (681)
.++.|+.-|++||++|++.|.+.|.|...|+ .||+|||++ .++++++|+++||+| ||.+ =.|+- -.+=
T Consensus 22 p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~-~~g~~df~g~~dl~~f~~~a~~~gl~v--ilrpGpyi~aE----~~~g 94 (319)
T PF01301_consen 22 PPEYWRDRLQKMKAAGLNTVSTYVPWNLHEP-EEGQFDFTGNRDLDRFLDLAQENGLYV--ILRPGPYICAE----WDNG 94 (319)
T ss_dssp -GGGHHHHHHHHHHTT-SEEEEE--HHHHSS-BTTB---SGGG-HHHHHHHHHHTT-EE--EEEEES---TT----BGGG
T ss_pred ChhHHHHHHHHHHhCCcceEEEeccccccCC-CCCcccccchhhHHHHHHHHHHcCcEE--Eecccceeccc----ccch
Confidence 4889999999999999999999999999998 799999997 679999999999997 6766 22320 1111
Q ss_pred cCChhHHhhhccCCCeEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHHhhhh--ccceEEEEe
Q 005715 343 SLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFV--AGLICAVEI 416 (681)
Q Consensus 343 pLP~WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g--~~vI~eI~V 416 (681)
-||.||.. ++++.+...+ . .-++..+.|++.+...+++++- .|.|.-|||
T Consensus 95 G~P~Wl~~----~~~~~~R~~~----~----------------~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQv 146 (319)
T PF01301_consen 95 GLPAWLLR----KPDIRLRTND----P----------------PFLEAVERWYRALAKIIKPLQYTNGGPIIMVQV 146 (319)
T ss_dssp G--GGGGG----STTS-SSSS-----H----------------HHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEE
T ss_pred hhhhhhhc----cccccccccc----h----------------hHHHHHHHHHHHHHHHHHhhhhcCCCceehhhh
Confidence 29999983 3444332111 1 1245556666666777776652 268888888
No 12
>PLN03059 beta-galactosidase; Provisional
Probab=98.20 E-value=7.3e-06 Score=95.91 Aligned_cols=147 Identities=18% Similarity=0.238 Sum_probs=103.3
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHH---HHHHHHHcCCcEEEEEEeeccCCCCCCCcccc
Q 005715 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRE---LFNIIREFNLKVQVVMAFHEYGANDSGDAWIS 343 (681)
Q Consensus 267 ~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~---l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~Ip 343 (681)
..++.|+.-|++||++|++.|.+-|.|..-|+ .||+|||++-++ .+++|++.||.|.+=..=.-|+-=-. =-
T Consensus 56 ~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp-~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~----GG 130 (840)
T PLN03059 56 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-SPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNF----GG 130 (840)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEecccccCC-CCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecC----CC
Confidence 36899999999999999999999999999999 699999998655 57889999999944433344431100 12
Q ss_pred CChhHHhhhccCCCeEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHHhhhh--------ccceEEEE
Q 005715 344 LPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFV--------AGLICAVE 415 (681)
Q Consensus 344 LP~WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g--------~~vI~eI~ 415 (681)
||.|+. ++|+|.+ ||--+.|.+.|+.|-+++.+.+. .|-|..+|
T Consensus 131 lP~WL~----~~~~i~~------------------------Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQ 182 (840)
T PLN03059 131 FPVWLK----YVPGIEF------------------------RTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQ 182 (840)
T ss_pred Cchhhh----cCCCccc------------------------ccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEE
Confidence 999997 4455433 33346788888888777777662 25677777
Q ss_pred ecccCCcCCCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHHhC
Q 005715 416 IGLGPSGELKYPSLSERMGWRYPGIGEFQCYDRYLQQSLRKAAKLRG 462 (681)
Q Consensus 416 VGLGPaGELRYPSYp~~~GW~~PGiGEFQCYDky~~a~lr~aA~~~G 462 (681)
| |=-|=||.. .| ---|+.-++.|++.|++.|
T Consensus 183 I------ENEYGs~~~----~~------~~~d~~Yl~~l~~~~~~~G 213 (840)
T PLN03059 183 I------ENEYGPVEW----EI------GAPGKAYTKWAADMAVKLG 213 (840)
T ss_pred e------cccccceec----cc------CcchHHHHHHHHHHHHHcC
Confidence 7 333544421 11 1225556677888888887
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=97.53 E-value=0.00033 Score=76.65 Aligned_cols=111 Identities=17% Similarity=0.150 Sum_probs=86.2
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---chHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccc
Q 005715 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (681)
Q Consensus 266 l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~I 342 (681)
......++.+|+.||++|++.+.+.+=|..+|+.+++++| +..|+++++.++++||++.|.|. | .
T Consensus 50 ~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~-H-----------f 117 (427)
T TIGR03356 50 CDHYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY-H-----------W 117 (427)
T ss_pred ccHHHhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec-c-----------C
Confidence 4567899999999999999999999999999998788888 79999999999999999966664 3 3
Q ss_pred cCChhHHhhhccCCCeEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHHhhhhc-cceEEEEe
Q 005715 343 SLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEI 416 (681)
Q Consensus 343 pLP~WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g~-~vI~eI~V 416 (681)
.+|.|+.+ +.|-.+. .-++.|.+|.+...++|.+...- -||.|..+
T Consensus 118 d~P~~l~~------------~gGw~~~----------------~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 164 (427)
T TIGR03356 118 DLPQALED------------RGGWLNR----------------DTAEWFAEYAAVVAERLGDRVKHWITLNEPWC 164 (427)
T ss_pred CccHHHHh------------cCCCCCh----------------HHHHHHHHHHHHHHHHhCCcCCEEEEecCcce
Confidence 59999863 2233222 22678888888888888874320 25556654
No 14
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=97.34 E-value=0.00091 Score=65.80 Aligned_cols=60 Identities=12% Similarity=0.283 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeec-cCCCc---cccchHHHHHHHHHHHcCCcEEEEEEeec
Q 005715 270 ELIRQEISHMKALNVDGVIVNCWWGIVE-GWNPQ---KYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (681)
Q Consensus 270 ~~l~~~L~~LK~aGVdGV~vDVWWGiVE-~~~p~---~YdWsgY~~l~~mvr~~GLKvqvVmSFHq 331 (681)
...++.++.||++|++-|++.+.|...+ +..+. .--|..++++++.|++.||+| |+.+|.
T Consensus 21 ~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~v--ild~h~ 84 (281)
T PF00150_consen 21 SITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYV--ILDLHN 84 (281)
T ss_dssp GSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EE--EEEEEE
T ss_pred CCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeE--EEEecc
Confidence 3789999999999999999999995444 43333 345788899999999999999 899995
No 15
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.13 E-value=0.0025 Score=73.36 Aligned_cols=86 Identities=26% Similarity=0.433 Sum_probs=64.7
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHH---HHHHHcCCcEEEEEEe--ecc-CCCCCCCc
Q 005715 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELF---NIIREFNLKVQVVMAF--HEY-GANDSGDA 340 (681)
Q Consensus 267 ~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~---~mvr~~GLKvqvVmSF--HqC-GGNVGD~~ 340 (681)
..++.|..-|+++|++|.+.|.+-|+|..-|+ .||+|||||=.+|+ .+|++.||=| +|-. --| -.|-|
T Consensus 46 ~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep-~~g~y~FsG~~DlvkFikl~~~~GLyv--~LRiGPyIcaEw~~G--- 119 (649)
T KOG0496|consen 46 STPEMWPDLIKKAKAGGLNVIQTYVFWNLHEP-SPGKYDFSGRYDLVKFIKLIHKAGLYV--ILRIGPYICAEWNFG--- 119 (649)
T ss_pred CChhhhHHHHHHHHhcCCceeeeeeecccccC-CCCcccccchhHHHHHHHHHHHCCeEE--EecCCCeEEecccCC---
Confidence 36799999999999999999999999999998 79999999977765 5667788876 4432 111 12222
Q ss_pred cccCChhHHhhhccCCCeEeecCC
Q 005715 341 WISLPQWVMEIGKGNQDIFFTDRE 364 (681)
Q Consensus 341 ~IpLP~WV~e~g~~~PDI~ytDr~ 364 (681)
-||.|+. .-|.|.|...+
T Consensus 120 --G~P~wL~----~~pg~~~Rt~n 137 (649)
T KOG0496|consen 120 --GLPWWLR----NVPGIVFRTDN 137 (649)
T ss_pred --Ccchhhh----hCCceEEecCC
Confidence 3887764 66777775443
No 16
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.07 E-value=0.0015 Score=71.67 Aligned_cols=101 Identities=22% Similarity=0.337 Sum_probs=75.9
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCC-Ccccc---chHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccc
Q 005715 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWN-PQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (681)
Q Consensus 267 ~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~-p~~Yd---WsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~I 342 (681)
.....++.+|+.||++|++...+.+=|..|+|.+ .+++| +..|+++++.++++||+..|.|. | .
T Consensus 55 d~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~-H-----------~ 122 (455)
T PF00232_consen 55 DHYHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLY-H-----------F 122 (455)
T ss_dssp GHHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEE-S-----------S
T ss_pred cchhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeee-e-----------c
Confidence 5678899999999999999999999999999987 78888 99999999999999999966654 2 3
Q ss_pred cCChhHHhhhccCCCeEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHHhhhh
Q 005715 343 SLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFV 407 (681)
Q Consensus 343 pLP~WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g 407 (681)
.||.|+.+.| |-.| |.-++.|.+|.+-..++|.++..
T Consensus 123 ~~P~~l~~~g------------gw~~----------------~~~~~~F~~Ya~~~~~~~gd~V~ 159 (455)
T PF00232_consen 123 DLPLWLEDYG------------GWLN----------------RETVDWFARYAEFVFERFGDRVK 159 (455)
T ss_dssp --BHHHHHHT------------GGGS----------------THHHHHHHHHHHHHHHHHTTTBS
T ss_pred ccccceeecc------------cccC----------------HHHHHHHHHHHHHHHHHhCCCcc
Confidence 6999998532 3222 23367888888888888887653
No 17
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=96.65 E-value=0.15 Score=54.13 Aligned_cols=230 Identities=16% Similarity=0.200 Sum_probs=145.0
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeee-ee------eccCC------Ccc-ccchHHHHHHHHHHHcCCcEEEEEEeec
Q 005715 266 LVDPELIRQEISHMKALNVDGVIVNCWW-GI------VEGWN------PQK-YAWSGYRELFNIIREFNLKVQVVMAFHE 331 (681)
Q Consensus 266 l~~~~~l~~~L~~LK~aGVdGV~vDVWW-Gi------VE~~~------p~~-YdWsgY~~l~~mvr~~GLKvqvVmSFHq 331 (681)
+..++++++-|+.||++|+..|-++||+ |. +|+.+ +++ -.|.-...+++.+++.||+|++=|-|--
T Consensus 15 ~~~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~ 94 (311)
T PF02638_consen 15 WPSKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGF 94 (311)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeec
Confidence 4478999999999999999999999995 32 33322 111 1377899999999999999999885422
Q ss_pred cCCCCCCCccccCChhHHhhhccCCCeEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHHhhhhccce
Q 005715 332 YGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLI 411 (681)
Q Consensus 332 CGGNVGD~~~IpLP~WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g~~vI 411 (681)
-....+.- .-.-|.|+. ..+|+...+...+.-+.-+|..+ .+.=++|+.+...++...++ |
T Consensus 95 ~~~~~~~~-~~~~p~~~~---~~~~~~~~~~~~~~~~~~~lnP~------------~PeVr~~i~~~v~Eiv~~Yd---v 155 (311)
T PF02638_consen 95 NAPDVSHI-LKKHPEWFA---VNHPGWVRTYEDANGGYYWLNPG------------HPEVRDYIIDIVKEIVKNYD---V 155 (311)
T ss_pred CCCchhhh-hhcCchhhe---ecCCCceeecccCCCCceEECCC------------CHHHHHHHHHHHHHHHhcCC---C
Confidence 11111111 112577765 46677555554444444466666 67889999999999988775 6
Q ss_pred EEEEecccCCcCCCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHHhCCcCcCCCCCCCCCCCCCCCCCcccccCCc
Q 005715 412 CAVEIGLGPSGELKYPSLSERMGWRYPGIGEFQCYDRYLQQSLRKAAKLRGHSFWARGPDNAGQYNSLPHETGFFCERGD 491 (681)
Q Consensus 412 ~eI~VGLGPaGELRYPSYp~~~GW~~PGiGEFQCYDky~~a~lr~aA~~~Gn~~WG~gP~nAg~YNs~P~~t~FF~~gG~ 491 (681)
..|.+= -.|||.. . + -||.+..+.|++.- | ..|. ..|.+.
T Consensus 156 DGIhlD-----dy~yp~~--~--~---------g~~~~~~~~y~~~~---g-----~~~~------~~~~d~-------- 195 (311)
T PF02638_consen 156 DGIHLD-----DYFYPPP--S--F---------GYDFPDVAAYEKYT---G-----KDPF------SSPEDD-------- 195 (311)
T ss_pred CeEEec-----ccccccc--c--C---------CCCCccHHHHHHhc---C-----cCCC------CCccch--------
Confidence 667643 2345421 1 1 24555555665431 1 0110 001100
Q ss_pred cccccccchHHHhHHHHHhHHHHHHHHHHHhcCCCceeeEeceeeeccCCCCChhhhhccccCCCCCCChHHHHHHHhhc
Q 005715 492 YDSYYGRFFLNWYAQTLIDHADNVLSLASLAFEETKIIVKVPGVYWWYKTASHAAELTAGYYNPSNQDGYAPVFEVLKKH 571 (681)
Q Consensus 492 w~S~YGkFFLsWYS~~Ll~HGDrVL~~A~~vF~g~~l~aKV~GIHWwY~t~SHaAELTAGYYNt~~rDGY~pIa~mfarh 571 (681)
...+|-.+.+-.--.+|-...+++=+.+.+++=+.|+. |.+-.+=|.....-+++-
T Consensus 196 -------~W~~WRr~~I~~~V~~i~~~ik~~kP~v~~sisp~g~~-----------------~~~y~~~~qD~~~W~~~G 251 (311)
T PF02638_consen 196 -------AWTQWRRDNINNFVKRIYDAIKAIKPWVKFSISPFGIW-----------------NSAYDDYYQDWRNWLKEG 251 (311)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeecch-----------------hhhhhheeccHHHHHhcC
Confidence 17889988888888888888777777788887555542 133334577777888664
Q ss_pred CcEEEEe
Q 005715 572 SVTMKFV 578 (681)
Q Consensus 572 ~v~l~FT 578 (681)
-++..++
T Consensus 252 ~iD~i~P 258 (311)
T PF02638_consen 252 YIDYIVP 258 (311)
T ss_pred CccEEEe
Confidence 4555544
No 18
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.54 E-value=0.011 Score=66.05 Aligned_cols=111 Identities=14% Similarity=0.239 Sum_probs=86.3
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCC----CccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCcc
Q 005715 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWN----PQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (681)
Q Consensus 266 l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~----p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~ 341 (681)
......++.+++.||++|++...+.+=|..|+|.+ +++-.++.|+++++-++++|++..|.|.-|
T Consensus 67 ~D~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~----------- 135 (474)
T PRK09852 67 IDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHF----------- 135 (474)
T ss_pred CchhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCC-----------
Confidence 45678899999999999999999999999999964 478889999999999999999997777654
Q ss_pred ccCChhHHhhhccCCCeEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHHhhhhc-cceEEEE
Q 005715 342 ISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVE 415 (681)
Q Consensus 342 IpLP~WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g~-~vI~eI~ 415 (681)
.||.|+.+. . .|-. .|.-++.|.+|.+-..++|.+...- -||.|..
T Consensus 136 -~~P~~l~~~---~--------GGW~----------------~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfNEPn 182 (474)
T PRK09852 136 -DVPMHLVTE---Y--------GSWR----------------NRKMVEFFSRYARTCFEAFDGLVKYWLTFNEIN 182 (474)
T ss_pred -CCCHHHHHh---c--------CCCC----------------CHHHHHHHHHHHHHHHHHhcCcCCeEEeecchh
Confidence 699998631 0 2211 1334678888888888888875431 1455665
No 19
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=96.12 E-value=0.026 Score=57.31 Aligned_cols=46 Identities=24% Similarity=0.497 Sum_probs=37.7
Q ss_pred eeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhHH
Q 005715 293 WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVM 349 (681)
Q Consensus 293 WGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpLP~WV~ 349 (681)
|+.+|+ .+|+|||+..+++++.|++.|++|+.-..+..+ ..|.|+.
T Consensus 3 W~~~ep-~~G~~n~~~~D~~~~~a~~~gi~v~gH~l~W~~----------~~P~W~~ 48 (254)
T smart00633 3 WDSTEP-SRGQFNFSGADAIVNFAKENGIKVRGHTLVWHS----------QTPDWVF 48 (254)
T ss_pred cccccC-CCCccChHHHHHHHHHHHHCCCEEEEEEEeecc----------cCCHhhh
Confidence 899998 799999999999999999999999643333221 3789986
No 20
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.11 E-value=0.021 Score=63.92 Aligned_cols=113 Identities=9% Similarity=0.182 Sum_probs=85.6
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCC----CccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCcc
Q 005715 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWN----PQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (681)
Q Consensus 266 l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~----p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~ 341 (681)
......++.+++.||++|++...+.+=|..|+|.+ +++-.+..|+++++.++++|++..|-|.-
T Consensus 65 ~D~Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H------------ 132 (477)
T PRK15014 65 VDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSH------------ 132 (477)
T ss_pred cCcccccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeC------------
Confidence 35677899999999999999999999999999965 46677999999999999999998555542
Q ss_pred ccCChhHHhhhccCCCeEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHHhhhhc-cceEEEEec
Q 005715 342 ISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEIG 417 (681)
Q Consensus 342 IpLP~WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g~-~vI~eI~VG 417 (681)
..||.|+.+. + .|-.| |.-++.|.+|.+-..++|.+...- -||.|+.|-
T Consensus 133 ~dlP~~L~~~---y--------GGW~n----------------~~~~~~F~~Ya~~~f~~fgdrVk~WiT~NEp~~~ 182 (477)
T PRK15014 133 FEMPLHLVQQ---Y--------GSWTN----------------RKVVDFFVRFAEVVFERYKHKVKYWMTFNEINNQ 182 (477)
T ss_pred CCCCHHHHHh---c--------CCCCC----------------hHHHHHHHHHHHHHHHHhcCcCCEEEEecCcccc
Confidence 3699999631 0 22222 233678888888888888874430 267777643
No 21
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=96.11 E-value=0.081 Score=50.09 Aligned_cols=111 Identities=18% Similarity=0.169 Sum_probs=75.0
Q ss_pred HHHHHHHHcCcceEEEeee--eee------eccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCC
Q 005715 274 QEISHMKALNVDGVIVNCW--WGI------VEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLP 345 (681)
Q Consensus 274 ~~L~~LK~aGVdGV~vDVW--WGi------VE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpLP 345 (681)
+-+..||++||+.|++.+= ||. |-...|+- .-.-+.++++.|++.||+|.+-++|+ .-
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L-~~Dllge~v~a~h~~Girv~ay~~~~-------------~d 69 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL-KRDLLGEQVEACHERGIRVPAYFDFS-------------WD 69 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC-CcCHHHHHHHHHHHCCCEEEEEEeee-------------cC
Confidence 4567899999999999442 331 21222332 36788999999999999999999993 34
Q ss_pred hhHHhhhccCCCeEeecCCCC--ccccceecccCcccccCCCchhHHHHHHHHHHHHHHHhhhh
Q 005715 346 QWVMEIGKGNQDIFFTDREGR--RNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFV 407 (681)
Q Consensus 346 ~WV~e~g~~~PDI~ytDr~G~--rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g 407 (681)
.|+. +++||=+..|++|+ +..+....+.-.+++ -.-|.||+....+++-+.+.
T Consensus 70 ~~~~---~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~------ns~Y~e~~~~~i~Ei~~~y~ 124 (132)
T PF14871_consen 70 EDAA---ERHPEWFVRDADGRPMRGERFGYPGWYTCCL------NSPYREFLLEQIREILDRYD 124 (132)
T ss_pred hHHH---HhCCceeeECCCCCCcCCCCcCCCCceecCC------CccHHHHHHHHHHHHHHcCC
Confidence 4554 79999999999998 223333322111221 13588998888877766543
No 22
>PLN02705 beta-amylase
Probab=95.97 E-value=0.011 Score=67.94 Aligned_cols=78 Identities=27% Similarity=0.297 Sum_probs=42.8
Q ss_pred cccCCCCCCCCCCCCCCCC------CCCcchhhhhHHHHHHhhcCCCCCC----CCCCCCCCCccchhHHHHhHHHHHhh
Q 005715 15 LLTQPPTQTQNQTQSHSRR------PRGFAATAAAAAAAAAANNNSNSNN----NNASSGKGKKEREKEKERTKLRERHR 84 (681)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~~~~~~~e~e~~~~rer~r 84 (681)
...+|..+++|||+|++-+ +|-.-.-||.|++++.+ ...+.++ ++||||.|...+.||+|+.|.|-|+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~r 91 (681)
T PLN02705 13 GSQDPNLDPIPQPDPFPNRNRNQPQSRRPRGFAATAAAAAIA-PTENDVNNGNISSGGGGGGGGKGKREREKEKERTKLR 91 (681)
T ss_pred cccCcccCCCCCCCCCCCCCCCCCccCCCcchhhhhcccccC-CCcccccCccccCCCCCCCCCCCCCcchhhhhhhHHH
Confidence 3444555555554444332 34455556655554433 3344443 23444445555568888888888888
Q ss_pred hhHHHHHHh
Q 005715 85 RAITSRMLA 93 (681)
Q Consensus 85 rai~~~i~~ 93 (681)
..=-+.|-+
T Consensus 92 er~rrai~~ 100 (681)
T PLN02705 92 ERHRRAITS 100 (681)
T ss_pred HHHHHHHHH
Confidence 765554443
No 23
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=95.66 E-value=0.041 Score=61.35 Aligned_cols=110 Identities=13% Similarity=0.147 Sum_probs=83.3
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc---cchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccc
Q 005715 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---AWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (681)
Q Consensus 266 l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Y---dWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~I 342 (681)
......++.+++.||++|++.-...+=|..|+|.+++.+ -+..|++|++-++++|++-.|.|- | .
T Consensus 50 ~d~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~-H-----------~ 117 (469)
T PRK13511 50 SDFYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLH-H-----------F 117 (469)
T ss_pred cchhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec-C-----------C
Confidence 467789999999999999999999999999999876544 578899999999999999855553 3 5
Q ss_pred cCChhHHhhhccCCCeEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHHhhhhc-cceEEEEe
Q 005715 343 SLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEI 416 (681)
Q Consensus 343 pLP~WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g~-~vI~eI~V 416 (681)
.||.|+.+ +.|-.|.| -++.|.+|.+-..++|.+ ..- -||.|..+
T Consensus 118 dlP~~L~~------------~GGW~n~~----------------~v~~F~~YA~~~~~~fgd-Vk~W~T~NEP~~ 163 (469)
T PRK13511 118 DTPEALHS------------NGDWLNRE----------------NIDHFVRYAEFCFEEFPE-VKYWTTFNEIGP 163 (469)
T ss_pred CCcHHHHH------------cCCCCCHH----------------HHHHHHHHHHHHHHHhCC-CCEEEEccchhh
Confidence 79999973 23433333 367777777777777777 541 14555543
No 24
>PLN02814 beta-glucosidase
Probab=95.50 E-value=0.053 Score=61.24 Aligned_cols=111 Identities=16% Similarity=0.169 Sum_probs=85.4
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccc---hHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccc
Q 005715 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAW---SGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (681)
Q Consensus 266 l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdW---sgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~I 342 (681)
......++.+++.||++|++.-...+=|..|+|.+++++|- ..|++|++-++++|++-.|-|. | .
T Consensus 73 ~D~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~-H-----------~ 140 (504)
T PLN02814 73 SDGYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLY-H-----------Y 140 (504)
T ss_pred ccHHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEec-C-----------C
Confidence 45778999999999999999999999999999988777775 6799999999999999855553 2 4
Q ss_pred cCChhHHhhhccCCCeEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHHhhhhc-cceEEEE
Q 005715 343 SLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVE 415 (681)
Q Consensus 343 pLP~WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g~-~vI~eI~ 415 (681)
.||.|+.+. . -|-. .|.-++.|.+|.+--.++|.+...- -||.|..
T Consensus 141 dlP~~L~~~---y--------GGW~----------------n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~ 187 (504)
T PLN02814 141 DLPQSLEDE---Y--------GGWI----------------NRKIIEDFTAFADVCFREFGEDVKLWTTINEAT 187 (504)
T ss_pred CCCHHHHHh---c--------CCcC----------------ChhHHHHHHHHHHHHHHHhCCcCCEEEeccccc
Confidence 799999731 0 2322 2334678888888888888885541 1455655
No 25
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=95.14 E-value=0.053 Score=60.58 Aligned_cols=110 Identities=14% Similarity=0.137 Sum_probs=82.2
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---chHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCcc
Q 005715 265 QLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (681)
Q Consensus 265 ~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~ 341 (681)
.......++.+++.||++|++.-.+.+=|..++|.+++++| ...|++|++-++++|++-.|-|. |
T Consensus 48 a~d~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~-H----------- 115 (467)
T TIGR01233 48 ASDFYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLH-H----------- 115 (467)
T ss_pred cCchhhhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEecc-C-----------
Confidence 34678899999999999999999999999999998877763 67899999999999999855553 2
Q ss_pred ccCChhHHhhhccCCCeEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHHhhhh-ccceEEEE
Q 005715 342 ISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFV-AGLICAVE 415 (681)
Q Consensus 342 IpLP~WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g-~~vI~eI~ 415 (681)
..||.|+.+ +-|-.|. .-++.|.+|.+--.++|.+ .. =-||.|..
T Consensus 116 ~dlP~~L~~------------~GGW~n~----------------~~v~~F~~YA~~~f~~fgd-Vk~WiT~NEP~ 161 (467)
T TIGR01233 116 FDTPEALHS------------NGDFLNR----------------ENIEHFIDYAAFCFEEFPE-VNYWTTFNEIG 161 (467)
T ss_pred CCCcHHHHH------------cCCCCCH----------------HHHHHHHHHHHHHHHHhCC-CCEEEEecchh
Confidence 569999963 2343332 3366777777666666665 32 12455554
No 26
>PLN02998 beta-glucosidase
Probab=95.04 E-value=0.084 Score=59.59 Aligned_cols=112 Identities=13% Similarity=0.197 Sum_probs=85.8
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---chHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccc
Q 005715 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (681)
Q Consensus 266 l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~I 342 (681)
......++.+++.||++|++.-.+.+=|..|+|.+.+.+| ...|++|++-+++.|++-.|-|. | .
T Consensus 78 ~D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~-H-----------~ 145 (497)
T PLN02998 78 CDQYHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLH-H-----------F 145 (497)
T ss_pred ccHHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEec-C-----------C
Confidence 4678899999999999999999999999999998777765 66899999999999999855553 3 4
Q ss_pred cCChhHHhhhccCCCeEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHHhhhhc-cceEEEEe
Q 005715 343 SLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEI 416 (681)
Q Consensus 343 pLP~WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g~-~vI~eI~V 416 (681)
.||.|+.+. . .|-. .|.-++.|.+|.+--.++|.+...- -||.|+.+
T Consensus 146 dlP~~L~~~---y--------GGW~----------------n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 193 (497)
T PLN02998 146 DLPQALEDE---Y--------GGWL----------------SQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNV 193 (497)
T ss_pred CCCHHHHHh---h--------CCcC----------------CchHHHHHHHHHHHHHHHhcCcCCEEEEccCcch
Confidence 799999731 0 2322 2344788888888888888885431 14556653
No 27
>PLN02849 beta-glucosidase
Probab=94.98 E-value=0.096 Score=59.23 Aligned_cols=112 Identities=13% Similarity=0.165 Sum_probs=85.6
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---chHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccc
Q 005715 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWI 342 (681)
Q Consensus 266 l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~I 342 (681)
......++.+++.||++|++.-...+=|..|+|.+.+++| ...|++|++-++++|++-.|-|. | .
T Consensus 75 ~D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~-H-----------~ 142 (503)
T PLN02849 75 CDGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLF-H-----------Y 142 (503)
T ss_pred ccHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeec-C-----------C
Confidence 4678899999999999999999999999999998766655 66799999999999999855553 3 5
Q ss_pred cCChhHHhhhccCCCeEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHHhhhhc-cceEEEEe
Q 005715 343 SLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEI 416 (681)
Q Consensus 343 pLP~WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g~-~vI~eI~V 416 (681)
.||.|+.+. . .|-. .|.-++.|.+|.+--.++|.+..+- -||.|..+
T Consensus 143 dlP~~L~~~---y--------GGW~----------------nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~ 190 (503)
T PLN02849 143 DHPQYLEDD---Y--------GGWI----------------NRRIIKDFTAYADVCFREFGNHVKFWTTINEANI 190 (503)
T ss_pred CCcHHHHHh---c--------CCcC----------------CchHHHHHHHHHHHHHHHhcCcCCEEEEecchhh
Confidence 799999731 0 2322 2334788888888888888885531 14556653
No 28
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=94.72 E-value=0.12 Score=58.04 Aligned_cols=112 Identities=13% Similarity=0.186 Sum_probs=84.2
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCC----ccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCcc
Q 005715 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNP----QKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (681)
Q Consensus 266 l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p----~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~ 341 (681)
......++.+++.||++|++.-.+.+=|..|+|.+. ++=-...|++|++-++++|++-.|-|. |
T Consensus 63 ~D~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~-H----------- 130 (476)
T PRK09589 63 IDFYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLS-H----------- 130 (476)
T ss_pred ccHHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-C-----------
Confidence 467789999999999999999999999999999752 334478899999999999999866553 3
Q ss_pred ccCChhHHhhhccCCCeEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHHhhhhc-cceEEEEe
Q 005715 342 ISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEI 416 (681)
Q Consensus 342 IpLP~WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g~-~vI~eI~V 416 (681)
..||.|+.+. . .|-. .|.-++.|.+|.+--.++|.+..+- -||.|..+
T Consensus 131 ~dlP~~L~~~---y--------GGW~----------------n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEp~~ 179 (476)
T PRK09589 131 FEMPYHLVTE---Y--------GGWR----------------NRKLIDFFVRFAEVVFTRYKDKVKYWMTFNEINN 179 (476)
T ss_pred CCCCHHHHHh---c--------CCcC----------------ChHHHHHHHHHHHHHHHHhcCCCCEEEEecchhh
Confidence 4699999631 0 2322 2333678888888888888875431 25667654
No 29
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=94.59 E-value=0.14 Score=57.37 Aligned_cols=112 Identities=14% Similarity=0.239 Sum_probs=83.7
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCC-Cc---cccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCcc
Q 005715 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWN-PQ---KYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (681)
Q Consensus 266 l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~-p~---~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~ 341 (681)
......++.+++.||++|++.-.+.+=|..|+|.+ ++ +=-...|++|++-+++.|++-.|-|- |
T Consensus 69 ~d~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~-H----------- 136 (478)
T PRK09593 69 IDMYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTIT-H----------- 136 (478)
T ss_pred cchHHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec-c-----------
Confidence 46788999999999999999999999999999975 33 34478899999999999999865553 3
Q ss_pred ccCChhHHhhhccCCCeEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHHhhhhc-cceEEEEe
Q 005715 342 ISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEI 416 (681)
Q Consensus 342 IpLP~WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g~-~vI~eI~V 416 (681)
..||.|+.+. + .|-.| |.-++.|.+|.+--.++|.+...- -||.|..+
T Consensus 137 ~dlP~~L~~~---~--------GGW~n----------------~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~ 185 (478)
T PRK09593 137 FDCPMHLIEE---Y--------GGWRN----------------RKMVGFYERLCRTLFTRYKGLVKYWLTFNEINM 185 (478)
T ss_pred cCCCHHHHhh---c--------CCCCC----------------hHHHHHHHHHHHHHHHHhcCcCCEEEeecchhh
Confidence 4699999631 0 23222 333678888888778888875431 14556654
No 30
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=93.87 E-value=0.13 Score=54.53 Aligned_cols=206 Identities=17% Similarity=0.337 Sum_probs=124.4
Q ss_pred HHHHHHHcCcceEEEe--eeeeeeccCCCccccchHHHHHHHHHHHcCCcEE--EEEEeeccCCCCCCCccccCChhHHh
Q 005715 275 EISHMKALNVDGVIVN--CWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ--VVMAFHEYGANDSGDAWISLPQWVME 350 (681)
Q Consensus 275 ~L~~LK~aGVdGV~vD--VWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvq--vVmSFHqCGGNVGD~~~IpLP~WV~e 350 (681)
..+.+-...++.|+.. .=|+.+|+ .+|+|||+.-+++++.|++.|++|+ +++. |. -.|.||..
T Consensus 26 ~~~~~~~~~Fn~~t~eN~~Kw~~~e~-~~g~~~~~~~D~~~~~a~~~g~~vrGH~LvW-~~-----------~~P~w~~~ 92 (320)
T PF00331_consen 26 RYRELFAKHFNSVTPENEMKWGSIEP-EPGRFNFESADAILDWARENGIKVRGHTLVW-HS-----------QTPDWVFN 92 (320)
T ss_dssp HHHHHHHHH-SEEEESSTTSHHHHES-BTTBEE-HHHHHHHHHHHHTT-EEEEEEEEE-SS-----------SS-HHHHT
T ss_pred HHHHHHHHhCCeeeeccccchhhhcC-CCCccCccchhHHHHHHHhcCcceeeeeEEE-cc-----------cccceeee
Confidence 4555555667777765 33999998 7999999999999999999999995 5554 42 37999984
Q ss_pred hhccCCCeEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHHhhhhc-cceEEEEe---cccCCc---C
Q 005715 351 IGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEI---GLGPSG---E 423 (681)
Q Consensus 351 ~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g~-~vI~eI~V---GLGPaG---E 423 (681)
....+|+ . -+..++.|+.+.+++...+++ |.|....| -+...| .
T Consensus 93 ~~~~~~~-----------~------------------~~~~~~~l~~~I~~v~~~y~~~g~i~~WDVvNE~i~~~~~~~~ 143 (320)
T PF00331_consen 93 LANGSPD-----------E------------------KEELRARLENHIKTVVTRYKDKGRIYAWDVVNEAIDDDGNPGG 143 (320)
T ss_dssp STTSSBH-----------H------------------HHHHHHHHHHHHHHHHHHTTTTTTESEEEEEES-B-TTSSSSS
T ss_pred ccCCCcc-----------c------------------HHHHHHHHHHHHHHHHhHhccccceEEEEEeeecccCCCcccc
Confidence 3001100 0 246788888888888888875 46666554 222222 2
Q ss_pred CCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHHhCCcCcCCCCCCCCCCCCCCCCCcccccCCccccccccchHHH
Q 005715 424 LKYPSLSERMGWRYPGIGEFQCYDRYLQQSLRKAAKLRGHSFWARGPDNAGQYNSLPHETGFFCERGDYDSYYGRFFLNW 503 (681)
Q Consensus 424 LRYPSYp~~~GW~~PGiGEFQCYDky~~a~lr~aA~~~Gn~~WG~gP~nAg~YNs~P~~t~FF~~gG~w~S~YGkFFLsW 503 (681)
||- ..| |--+| +.|....|+.+-+.. |.-.-|..| |+....
T Consensus 144 ~r~------~~~-~~~lG-----~~yi~~aF~~A~~~~------------------P~a~L~~ND---y~~~~~------ 184 (320)
T PF00331_consen 144 LRD------SPW-YDALG-----PDYIADAFRAAREAD------------------PNAKLFYND---YNIESP------ 184 (320)
T ss_dssp BCT------SHH-HHHHT-----TCHHHHHHHHHHHHH------------------TTSEEEEEE---SSTTST------
T ss_pred ccC------Chh-hhccc-----HhHHHHHHHHHHHhC------------------CCcEEEecc---ccccch------
Confidence 222 111 11233 678888998877743 222333433 332222
Q ss_pred hHHHHHhHHHHHHHHHHHhc-CCCceeeEecee----eeccCCCCChhhhhccccCCCCCCChHHHHHHHhhcCcEEEEe
Q 005715 504 YAQTLIDHADNVLSLASLAF-EETKIIVKVPGV----YWWYKTASHAAELTAGYYNPSNQDGYAPVFEVLKKHSVTMKFV 578 (681)
Q Consensus 504 YS~~Ll~HGDrVL~~A~~vF-~g~~l~aKV~GI----HWwY~t~SHaAELTAGYYNt~~rDGY~pIa~mfarh~v~l~FT 578 (681)
.+-++++.+.+.+= .|++ |-|| |+..... .+.+...++.|+..|+.+++|
T Consensus 185 ------~k~~~~~~lv~~l~~~gvp----IdgIG~Q~H~~~~~~---------------~~~i~~~l~~~~~~Gl~i~IT 239 (320)
T PF00331_consen 185 ------AKRDAYLNLVKDLKARGVP----IDGIGLQSHFDAGYP---------------PEQIWNALDRFASLGLPIHIT 239 (320)
T ss_dssp ------HHHHHHHHHHHHHHHTTHC----S-EEEEEEEEETTSS---------------HHHHHHHHHHHHTTTSEEEEE
T ss_pred ------HHHHHHHHHHHHHHhCCCc----cceechhhccCCCCC---------------HHHHHHHHHHHHHcCCceEEE
Confidence 55777777776544 2455 4444 5443322 334667788888899999999
Q ss_pred ee-cCCCCC
Q 005715 579 CA-VPSLQD 586 (681)
Q Consensus 579 Cl-M~d~e~ 586 (681)
=+ +.+...
T Consensus 240 ElDv~~~~~ 248 (320)
T PF00331_consen 240 ELDVRDDDN 248 (320)
T ss_dssp EEEEESSST
T ss_pred eeeecCCCC
Confidence 99 665443
No 31
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.21 E-value=1.8 Score=49.12 Aligned_cols=148 Identities=14% Similarity=0.160 Sum_probs=100.5
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCc-ccc---chHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCc
Q 005715 265 QLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQ-KYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDA 340 (681)
Q Consensus 265 ~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~-~Yd---WsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~ 340 (681)
........+.+++.||++|++...+.+=|..+-|.+.+ ..| -.-|++||+-+.+.|++..|-|+
T Consensus 54 a~d~YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~------------ 121 (460)
T COG2723 54 ASDFYHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLY------------ 121 (460)
T ss_pred ccchhhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEec------------
Confidence 35667889999999999999999999999999996655 555 55699999999999999855553
Q ss_pred cccCChhHHhhhccCCCeEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHHhhhhc-cceEEEEeccc
Q 005715 341 WISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA-GLICAVEIGLG 419 (681)
Q Consensus 341 ~IpLP~WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g~-~vI~eI~VGLG 419 (681)
...+|.|+.+.. .|-. -|.-++.|..|.+--..+|.+...- -|.-|+.|=+.
T Consensus 122 Hfd~P~~L~~~y-----------gGW~----------------nR~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~~~ 174 (460)
T COG2723 122 HFDLPLWLQKPY-----------GGWE----------------NRETVDAFARYAATVFERFGDKVKYWFTFNEPNVVVE 174 (460)
T ss_pred ccCCcHHHhhcc-----------CCcc----------------CHHHHHHHHHHHHHHHHHhcCcceEEEEecchhhhhc
Confidence 257999998432 2333 2444778878877777777766541 14445544333
Q ss_pred CCcCCCCCCCCCCCCCccCCCcccccccHHHHHHHHHHHHH
Q 005715 420 PSGELKYPSLSERMGWRYPGIGEFQCYDRYLQQSLRKAAKL 460 (681)
Q Consensus 420 PaGELRYPSYp~~~GW~~PGiGEFQCYDky~~a~lr~aA~~ 460 (681)
++-..|-..|++..++-.=+-+--.+-++|++
T Consensus 175 ---------~~y~~~~~~p~~~~~~~~~qa~hh~~lA~A~a 206 (460)
T COG2723 175 ---------LGYLYGGHPPGIVDPKAAYQVAHHMLLAHALA 206 (460)
T ss_pred ---------ccccccccCCCccCHHHHHHHHHHHHHHHHHH
Confidence 11122334567776654444444445555554
No 32
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=93.11 E-value=0.33 Score=54.17 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHH-HcCcceEEEeeeeeee-------cc-CCCc--cccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCC
Q 005715 269 PELIRQEISHMK-ALNVDGVIVNCWWGIV-------EG-WNPQ--KYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDS 337 (681)
Q Consensus 269 ~~~l~~~L~~LK-~aGVdGV~vDVWWGiV-------E~-~~p~--~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVG 337 (681)
...++.+|+.++ ++|+..|.+ ||+. .. .+++ .|||+..+++++.+.+.|||..+-|+|
T Consensus 38 ~~~~q~~l~~~~~~~gf~yvR~---h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f-------- 106 (486)
T PF01229_consen 38 RADWQEQLRELQEELGFRYVRF---HGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGF-------- 106 (486)
T ss_dssp BHHHHHHHHHHHCCS--SEEEE---S-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-S--------
T ss_pred hHHHHHHHHHHHhccCceEEEE---EeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEe--------
Confidence 367889999987 699999975 3333 11 1222 399999999999999999999999999
Q ss_pred CCccccCChhHHhhhccCCCeEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHHhhhhc
Q 005715 338 GDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA 408 (681)
Q Consensus 338 D~~~IpLP~WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g~ 408 (681)
-|.++.. .+.-.|. .+..++.- .-.+.+.|++++|..++.+.+|.
T Consensus 107 ------~p~~~~~----~~~~~~~------~~~~~~pp----------~~~~~W~~lv~~~~~h~~~RYG~ 151 (486)
T PF01229_consen 107 ------MPMALAS----GYQTVFW------YKGNISPP----------KDYEKWRDLVRAFARHYIDRYGI 151 (486)
T ss_dssp ------B-GGGBS----S--EETT------TTEE-S-B----------S-HHHHHHHHHHHHHHHHHHHHH
T ss_pred ------chhhhcC----CCCcccc------ccCCcCCc----------ccHHHHHHHHHHHHHHHHhhcCC
Confidence 6666642 1111111 11122221 22689999999999999999983
No 33
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=91.73 E-value=1.1 Score=46.52 Aligned_cols=117 Identities=16% Similarity=0.323 Sum_probs=71.9
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---chHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhH
Q 005715 272 IRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWV 348 (681)
Q Consensus 272 l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpLP~WV 348 (681)
+...++++.++|+++|.++.-|+--.--+|..|. +-+++++++-+++.|.++ .+|-|| |.+ ++=.++
T Consensus 170 ~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~g~~~----~lH~cG-~~~-----~~~~~l 239 (330)
T cd03465 170 IIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPV----IHHNCG-DTA-----PILELM 239 (330)
T ss_pred HHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHcCCce----EEEECC-Cch-----hHHHHH
Confidence 3455667778899999999988743322455555 999999999999988765 569995 433 344555
Q ss_pred HhhhccCCCeEeecCCCC-----c---cccceecccCcccccCCCchhHHHHHHHHHHHHHH
Q 005715 349 MEIGKGNQDIFFTDREGR-----R---NTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEF 402 (681)
Q Consensus 349 ~e~g~~~PDI~ytDr~G~-----r---n~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F 402 (681)
.+. ..|++-.|..-. + .+-+|..++|..-+|..-||-++. +..+...+.+
T Consensus 240 ~~~---~~d~~~~d~~~dl~~~~~~~g~~~~i~G~id~~~~l~~gt~eei~-~~v~~~l~~~ 297 (330)
T cd03465 240 ADL---GADVFSIDVTVDLAEAKKKVGDKACLMGNLDPIDVLLNGSPEEIK-EEVKELLEKL 297 (330)
T ss_pred HHh---CCCeEeecccCCHHHHHHHhCCceEEEeCcChHHhhcCCCHHHHH-HHHHHHHHHH
Confidence 543 356666654411 0 124566678775334444664444 3333333333
No 34
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=89.85 E-value=0.62 Score=50.54 Aligned_cols=53 Identities=19% Similarity=0.300 Sum_probs=40.5
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeec
Q 005715 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (681)
Q Consensus 274 ~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHq 331 (681)
.-|+.||+.||..|++-|| |.|...|..|...-.++++-++++|||| .|-||-
T Consensus 28 d~~~ilk~~G~N~vRlRvw---v~P~~~g~~~~~~~~~~akrak~~Gm~v--lldfHY 80 (332)
T PF07745_consen 28 DLFQILKDHGVNAVRLRVW---VNPYDGGYNDLEDVIALAKRAKAAGMKV--LLDFHY 80 (332)
T ss_dssp -HHHHHHHTT--EEEEEE----SS-TTTTTTSHHHHHHHHHHHHHTT-EE--EEEE-S
T ss_pred CHHHHHHhcCCCeEEEEec---cCCcccccCCHHHHHHHHHHHHHCCCeE--EEeecc
Confidence 4678899999999999997 6664458899999999999999999999 899994
No 35
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=89.56 E-value=0.24 Score=52.42 Aligned_cols=105 Identities=16% Similarity=0.301 Sum_probs=69.6
Q ss_pred CCCCCCccEEEEeeceeecCCccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCc
Q 005715 243 FTGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLK 322 (681)
Q Consensus 243 ~~~~~~vpVyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLK 322 (681)
++...+|.|.+..--..-.+...+.+. +++-|+.+++.||.||.||.+ .+++|+-=..|+++++.|.+++|-
T Consensus 81 Ya~~KgVgi~lw~~~~~~~~~~~~~~~--~~~~f~~~~~~Gv~GvKidF~------~~d~Q~~v~~y~~i~~~AA~~~Lm 152 (273)
T PF10566_consen 81 YAKEKGVGIWLWYHSETGGNVANLEKQ--LDEAFKLYAKWGVKGVKIDFM------DRDDQEMVNWYEDILEDAAEYKLM 152 (273)
T ss_dssp HHHHTT-EEEEEEECCHTTBHHHHHCC--HHHHHHHHHHCTEEEEEEE--------SSTSHHHHHHHHHHHHHHHHTT-E
T ss_pred HHHHcCCCEEEEEeCCcchhhHhHHHH--HHHHHHHHHHcCCCEEeeCcC------CCCCHHHHHHHHHHHHHHHHcCcE
Confidence 445678888887765542111113333 699999999999999999986 358999999999999999999885
Q ss_pred EEEEEEeeccCCCCCCCccccCCh-hHHhhhccCCCeEeecCCCCccccceecc
Q 005715 323 VQVVMAFHEYGANDSGDAWISLPQ-WVMEIGKGNQDIFFTDREGRRNTECLSWG 375 (681)
Q Consensus 323 vqvVmSFHqCGGNVGD~~~IpLP~-WV~e~g~~~PDI~ytDr~G~rn~E~LSlg 375 (681)
+-||.|= .|. |- +.+|.++ .++|.|-.|+-.|.
T Consensus 153 ----vnfHg~~----------kPtG~~----RTyPN~m--T~EgVrG~E~~~~~ 186 (273)
T PF10566_consen 153 ----VNFHGAT----------KPTGLR----RTYPNLM--TREGVRGQEYNKWS 186 (273)
T ss_dssp ----EEETTS-------------TTHH----HCSTTEE--EE--S--GGGGGTT
T ss_pred ----EEecCCc----------CCCccc----ccCccHH--HHHHhhhhhhcccc
Confidence 4899763 554 44 5888764 56888888885454
No 36
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=88.52 E-value=1.6 Score=42.80 Aligned_cols=56 Identities=27% Similarity=0.493 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCC--Cccc-cc-------hHHHHHHHHHHHcCCcEEE
Q 005715 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWN--PQKY-AW-------SGYRELFNIIREFNLKVQV 325 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~--p~~Y-dW-------sgY~~l~~mvr~~GLKvqv 325 (681)
+++.|++.|+.||++|++.|.+- |.-.+... |-++ ++ .....+++.|.+.|+||.+
T Consensus 18 ~~~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~ 83 (166)
T PF14488_consen 18 TPAQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFV 83 (166)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEE
Confidence 67899999999999999999876 54444322 2222 11 3688999999999999933
No 37
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=87.84 E-value=4 Score=41.26 Aligned_cols=122 Identities=17% Similarity=0.236 Sum_probs=71.6
Q ss_pred CCcccc-CHHHHHHHHHHH-HHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCC
Q 005715 262 NFCQLV-DPELIRQEISHM-KALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGD 339 (681)
Q Consensus 262 ~~~~l~-~~~~l~~~L~~L-K~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~ 339 (681)
.+|... +.+...+-|+.+ ...|+|.|.|+++|.. ...+++++.+++.|-|| |+|+|.=.+
T Consensus 69 eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~-----------~~~~~l~~~~~~~~~kv--I~S~H~f~~----- 130 (228)
T TIGR01093 69 EGGKFPGNEEEYLEELKRAADSPGPDFVDIELFLPD-----------DAVKELINIAKKGGTKI--IMSYHDFQK----- 130 (228)
T ss_pred hCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEccCCH-----------HHHHHHHHHHHHCCCEE--EEeccCCCC-----
Confidence 344433 333333345555 7789999999998741 24678888888999887 999994321
Q ss_pred ccccCChhHHhhhccCCCeEeecCCCCccccceecccCcccc-cCCCchhHHHHHHHHHHHHHHHhhhhccceEEEEecc
Q 005715 340 AWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERV-LNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGL 418 (681)
Q Consensus 340 ~~IpLP~WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pV-l~GRTpiq~Y~DFmrSFr~~F~~~~g~~vI~eI~VGL 418 (681)
+-+.+.|+. . -.+..++|+|-+.+ ..-+++.++.+= .+|..++.... .+-=|.++|
T Consensus 131 -tp~~~~l~~-~----------------~~~~~~~gaDivKia~~a~~~~D~~~l--l~~~~~~~~~~---~~p~i~~~M 187 (228)
T TIGR01093 131 -TPSWEEIVE-R----------------LEKALSYGADIVKIAVMANSKEDVLTL--LEITNKVDEHA---DVPLITMSM 187 (228)
T ss_pred -CCCHHHHHH-H----------------HHHHHHhCCCEEEEEeccCCHHHHHHH--HHHHHHHHhcC---CCCEEEEeC
Confidence 112223321 1 12344677776665 344555444422 25555554431 244578999
Q ss_pred cCCcCC
Q 005715 419 GPSGEL 424 (681)
Q Consensus 419 GPaGEL 424 (681)
|+.|-+
T Consensus 188 G~~G~~ 193 (228)
T TIGR01093 188 GDRGKI 193 (228)
T ss_pred CCCChh
Confidence 998865
No 38
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=87.27 E-value=5.8 Score=41.08 Aligned_cols=123 Identities=17% Similarity=0.222 Sum_probs=73.3
Q ss_pred CCcccc-CHHHHHHHHHHHHHcC-cceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCC
Q 005715 262 NFCQLV-DPELIRQEISHMKALN-VDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGD 339 (681)
Q Consensus 262 ~~~~l~-~~~~l~~~L~~LK~aG-VdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~ 339 (681)
.+|+.. +.+...+-|+.+-.+| +|.|.|+..+. =...+++.+.+++.|.|| |+|+|.=.
T Consensus 86 eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~-----------~~~~~~l~~~~~~~~~kv--I~S~H~f~------ 146 (253)
T PRK02412 86 EGGEIALSDEEYLALIKAVIKSGLPDYIDVELFSG-----------KDVVKEMVAFAHEHGVKV--VLSYHDFE------ 146 (253)
T ss_pred hCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCC-----------hHHHHHHHHHHHHcCCEE--EEeeCCCC------
Confidence 344433 3334444567777788 99999987653 134678889999999987 99999422
Q ss_pred ccccCChhHHhhhccCCCeEeecCCCCccccceecccCcccc-cCCCchhHHHHHHHHHHHHHHHhhhhccceEEEEecc
Q 005715 340 AWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERV-LNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGL 418 (681)
Q Consensus 340 ~~IpLP~WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pV-l~GRTpiq~Y~DFmrSFr~~F~~~~g~~vI~eI~VGL 418 (681)
-+++.|-+.. .-.++.++|+|-+-+ ..-+++.++.+=+ .|..++..... .+-=|.++|
T Consensus 147 --~tP~~~~l~~---------------~~~~~~~~gaDivKia~~a~~~~D~~~ll--~~~~~~~~~~~--~~P~i~~~M 205 (253)
T PRK02412 147 --KTPPKEEIVE---------------RLRKMESLGADIVKIAVMPQSEQDVLTLL--NATREMKELYA--DQPLITMSM 205 (253)
T ss_pred --CCcCHHHHHH---------------HHHHHHHhCCCEEEEEecCCCHHHHHHHH--HHHHHHHhcCC--CCCEEEEeC
Confidence 2244443210 112455677886665 3456666655432 34444443211 234578999
Q ss_pred cCCcCC
Q 005715 419 GPSGEL 424 (681)
Q Consensus 419 GPaGEL 424 (681)
|+-|-+
T Consensus 206 G~~G~~ 211 (253)
T PRK02412 206 GKLGRI 211 (253)
T ss_pred CCCchH
Confidence 998854
No 39
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=86.08 E-value=2.4 Score=44.63 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=54.4
Q ss_pred CccEEEEeece---eecCCccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEE
Q 005715 248 YIPVYVMLANH---VINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (681)
Q Consensus 248 ~vpVyVMLPLd---~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvq 324 (681)
.+||+||+=-- .+-++ .+-+.+..+++.+|++|+|||.+.+- ..+++.|...-++|++.++ |+++-
T Consensus 51 ~ipv~vMIRPR~gdF~Ys~---~E~~~M~~di~~~~~~GadGvV~G~L------~~dg~vD~~~~~~Li~~a~--~~~vT 119 (248)
T PRK11572 51 TIPVHPIIRPRGGDFCYSD---GEFAAMLEDIATVRELGFPGLVTGVL------DVDGHVDMPRMRKIMAAAG--PLAVT 119 (248)
T ss_pred CCCeEEEEecCCCCCCCCH---HHHHHHHHHHHHHHHcCCCEEEEeeE------CCCCCcCHHHHHHHHHHhc--CCceE
Confidence 48999998442 22221 24478999999999999999998764 3588999999999999995 78774
Q ss_pred EEEEe
Q 005715 325 VVMAF 329 (681)
Q Consensus 325 vVmSF 329 (681)
-=++|
T Consensus 120 FHRAf 124 (248)
T PRK11572 120 FHRAF 124 (248)
T ss_pred Eechh
Confidence 44555
No 40
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=85.68 E-value=1.4 Score=45.23 Aligned_cols=61 Identities=11% Similarity=0.097 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeecc--CCCc---cccchHHHHHHHHHHHcCCcEEEEEEeeccCCC
Q 005715 271 LIRQEISHMKALNVDGVIVNCWWGIVEG--WNPQ---KYAWSGYRELFNIIREFNLKVQVVMAFHEYGAN 335 (681)
Q Consensus 271 ~l~~~L~~LK~aGVdGV~vDVWWGiVE~--~~p~---~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGN 335 (681)
.+...++++.++|+++|.++.=|+.... -+|. +|-|.+|+++++.+++.|.++ + .|-||+.
T Consensus 145 ~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~--~--lH~cg~~ 210 (306)
T cd00465 145 FILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPI--V--HHSCYDA 210 (306)
T ss_pred HHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCce--E--EEECCCH
Confidence 4556677888999999999876665431 1344 455899999999888877665 3 4999953
No 41
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=85.61 E-value=12 Score=37.60 Aligned_cols=144 Identities=17% Similarity=0.175 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhHH
Q 005715 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVM 349 (681)
Q Consensus 270 ~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpLP~WV~ 349 (681)
+...+-|+.+-.+|+|.|.|+..+ .-..+++..+++.|-|| |+|+|.-.+.. +.+.|..
T Consensus 76 ~~~~~ll~~~~~~~~d~vDiEl~~-------------~~~~~~~~~~~~~~~ki--I~S~H~f~~tp------~~~~l~~ 134 (225)
T cd00502 76 EEYLELLEEALKLGPDYVDIELDS-------------ALLEELINSRKKGNTKI--IGSYHDFSGTP------SDEELVS 134 (225)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecc-------------hHHHHHHHHHHhCCCEE--EEEeccCCCCc------CHHHHHH
Confidence 344445677777889999988755 34777888888888888 99999544221 2333432
Q ss_pred hhhccCCCeEeecCCCCccccceecccCcccc-cCCCchhHHHHHHHHHHHHHHHhhhhccceEEEEecccCCcCCCCCC
Q 005715 350 EIGKGNQDIFFTDREGRRNTECLSWGVDKERV-LNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAVEIGLGPSGELKYPS 428 (681)
Q Consensus 350 e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pV-l~GRTpiq~Y~DFmrSFr~~F~~~~g~~vI~eI~VGLGPaGELRYPS 428 (681)
-. .++-.+++|-+.+ ...+++.+..+= + .|..++.... .+.=|.++||+.|.+-==.
T Consensus 135 ~~-----------------~~~~~~gadivKla~~~~~~~D~~~l-l-~~~~~~~~~~---~~p~i~~~MG~~G~~SRil 192 (225)
T cd00502 135 RL-----------------EKMAALGADIVKIAVMANSIEDNLRL-L-KFTRQVKNLY---DIPLIAINMGELGKLSRIL 192 (225)
T ss_pred HH-----------------HHHHHhCCCEEEEEecCCCHHHHHHH-H-HHHHHHHhcC---CCCEEEEEcCCCCchhhcc
Confidence 11 1223345665554 233444443322 2 4444444332 2455789999999642111
Q ss_pred CC-CCCCCccCCCcccccccHHHHHHHHH
Q 005715 429 LS-ERMGWRYPGIGEFQCYDRYLQQSLRK 456 (681)
Q Consensus 429 Yp-~~~GW~~PGiGEFQCYDky~~a~lr~ 456 (681)
-| -..-+.|..+++-..-.+.-+..+++
T Consensus 193 ~~~~gs~~t~~~~~~~sApGQ~~~~~l~~ 221 (225)
T cd00502 193 SPVFGSPLTYASLPEPSAPGQLSVEELKQ 221 (225)
T ss_pred ccccCCcccccCCCCCCCCCCcCHHHHHH
Confidence 11 11115565555544444444444444
No 42
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=85.10 E-value=1.6 Score=44.38 Aligned_cols=67 Identities=19% Similarity=0.347 Sum_probs=46.7
Q ss_pred CCCccEEEEeec---eeecCCccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCc
Q 005715 246 TPYIPVYVMLAN---HVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLK 322 (681)
Q Consensus 246 ~~~vpVyVMLPL---d~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLK 322 (681)
...+||+||+=- |.+-++ .+-+.+..+++.+|++|+|||.+.+ +- .++..|...-++|.+.++ |+.
T Consensus 48 ~~~ipv~vMIRpr~gdF~Ys~---~E~~~M~~dI~~~~~~GadG~VfG~----L~--~dg~iD~~~~~~Li~~a~--~~~ 116 (201)
T PF03932_consen 48 AVDIPVHVMIRPRGGDFVYSD---EEIEIMKEDIRMLRELGADGFVFGA----LT--EDGEIDEEALEELIEAAG--GMP 116 (201)
T ss_dssp HTTSEEEEE--SSSS-S---H---HHHHHHHHHHHHHHHTT-SEEEE------BE--TTSSB-HHHHHHHHHHHT--TSE
T ss_pred hcCCceEEEECCCCCCccCCH---HHHHHHHHHHHHHHHcCCCeeEEEe----EC--CCCCcCHHHHHHHHHhcC--CCe
Confidence 456899999854 222222 2447899999999999999999865 33 488999999999999987 777
Q ss_pred E
Q 005715 323 V 323 (681)
Q Consensus 323 v 323 (681)
+
T Consensus 117 ~ 117 (201)
T PF03932_consen 117 V 117 (201)
T ss_dssp E
T ss_pred E
Confidence 7
No 43
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=83.38 E-value=2.9 Score=46.18 Aligned_cols=54 Identities=15% Similarity=0.266 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEee
Q 005715 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFH 330 (681)
..+.|+++++..|++|+||..+++. .+..+.+.-...+++.|++.|+|| .+||-
T Consensus 15 t~~dw~~di~~A~~~GIDgFaLNig-------~~d~~~~~~l~~a~~AA~~~gFKl--f~SfD 68 (386)
T PF03659_consen 15 TQEDWEADIRLAQAAGIDGFALNIG-------SSDSWQPDQLADAYQAAEAVGFKL--FFSFD 68 (386)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecc-------cCCcccHHHHHHHHHHHHhcCCEE--EEEec
Confidence 6789999999999999999999996 344577899999999999999998 88884
No 44
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=83.24 E-value=8 Score=38.67 Aligned_cols=124 Identities=16% Similarity=0.236 Sum_probs=74.3
Q ss_pred ceeecCCcccc-CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCC
Q 005715 257 NHVINNFCQLV-DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGAN 335 (681)
Q Consensus 257 Ld~V~~~~~l~-~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGN 335 (681)
+-+...+|... +.+.-.+-|+.+-.+|++.|.|+.+ .+.-+......+++.+-|| |+|+|-..+
T Consensus 61 ~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE~~------------~~~~~~~~~~~~~~~~~~i--I~S~H~f~~- 125 (224)
T PF01487_consen 61 VRTKEEGGRFQGSEEEYLELLERAIRLGPDYIDIELD------------LFPDDLKSRLAARKGGTKI--ILSYHDFEK- 125 (224)
T ss_dssp --BGGGTSSBSS-HHHHHHHHHHHHHHTSSEEEEEGG------------CCHHHHHHHHHHHHTTSEE--EEEEEESS--
T ss_pred ecccccCCCCcCCHHHHHHHHHHHHHcCCCEEEEEcc------------cchhHHHHHHHHhhCCCeE--EEEeccCCC-
Confidence 33445556553 4455556677777788998888654 1334444477788888888 999994442
Q ss_pred CCCCccccCChh--HHhhhccCCCeEeecCCCCccccceecccCcccc-cCCCchhHHHHHHHHHHHHHHHhhhhccceE
Q 005715 336 DSGDAWISLPQW--VMEIGKGNQDIFFTDREGRRNTECLSWGVDKERV-LNGRTGIEVYFDFMRSFRTEFDDLFVAGLIC 412 (681)
Q Consensus 336 VGD~~~IpLP~W--V~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pV-l~GRTpiq~Y~DFmrSFr~~F~~~~g~~vI~ 412 (681)
-|.| +.+. -.+...+++|-+-+ ...+++.+..+ +..|..++.... .+.
T Consensus 126 --------tp~~~~l~~~----------------~~~~~~~gadivKia~~~~~~~D~~~--l~~~~~~~~~~~---~~p 176 (224)
T PF01487_consen 126 --------TPSWEELIEL----------------LEEMQELGADIVKIAVMANSPEDVLR--LLRFTKEFREEP---DIP 176 (224)
T ss_dssp ----------THHHHHHH----------------HHHHHHTT-SEEEEEEE-SSHHHHHH--HHHHHHHHHHHT---SSE
T ss_pred --------CCCHHHHHHH----------------HHHHHhcCCCeEEEEeccCCHHHHHH--HHHHHHHHhhcc---CCc
Confidence 3444 2211 12344567776555 35566666665 566666666652 467
Q ss_pred EEEecccCCcCC
Q 005715 413 AVEIGLGPSGEL 424 (681)
Q Consensus 413 eI~VGLGPaGEL 424 (681)
-|-++||+.|.+
T Consensus 177 ~i~~~MG~~G~~ 188 (224)
T PF01487_consen 177 VIAISMGELGRI 188 (224)
T ss_dssp EEEEEETGGGHH
T ss_pred EEEEEcCCCchh
Confidence 789999999864
No 45
>PRK10785 maltodextrin glucosidase; Provisional
Probab=83.19 E-value=32 Score=39.98 Aligned_cols=157 Identities=18% Similarity=0.222 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc-------------chHHHHHHHHHHHcCCcEEEEEEeeccCC
Q 005715 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA-------------WSGYRELFNIIREFNLKVQVVMAFHEYGA 334 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Yd-------------WsgY~~l~~mvr~~GLKvqvVmSFHqCGG 334 (681)
|-++|.+.|-.||++||++|-+-= +.|..+--.|+ ...+++|++.|++.|+||..=+-|.-||
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~P---if~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~- 252 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNP---IFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTG- 252 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCC---cccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCC-
Confidence 669999999999999999998754 23433333343 3578999999999999997777776565
Q ss_pred CCCCCccccCChhHHhhhc-----------cCCCeEeecCCCCccccceec-ccCcccccCCCchhHHHHHHHHHHH-HH
Q 005715 335 NDSGDAWISLPQWVMEIGK-----------GNQDIFFTDREGRRNTECLSW-GVDKERVLNGRTGIEVYFDFMRSFR-TE 401 (681)
Q Consensus 335 NVGD~~~IpLP~WV~e~g~-----------~~PDI~ytDr~G~rn~E~LSl-g~D~~pVl~GRTpiq~Y~DFmrSFr-~~ 401 (681)
++ -.|+..... .+.|-|+-+..| .+.+| +++.+|-|+=. -+..++||..=. +-
T Consensus 253 ---~~-----~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~----~~~~w~g~~~lPdLN~~--np~v~~~l~~~~~~v 318 (598)
T PRK10785 253 ---DS-----HPWFDRHNRGTGGACHHPDSPWRDWYSFSDDG----RALDWLGYASLPKLDFQ--SEEVVNEIYRGEDSI 318 (598)
T ss_pred ---CC-----CHHHHHhhccccccccCCCCCcceeeEECCCC----CcCCcCCCCcCccccCC--CHHHHHHHHhhhhHH
Confidence 22 127764321 112344444444 24555 46677777533 346667765311 12
Q ss_pred HHhhhhccceEEEEecccCCcCCCCCCCCCCCCCccCC---Cc--ccccccHHHHHHHHHHHHHhC
Q 005715 402 FDDLFVAGLICAVEIGLGPSGELKYPSLSERMGWRYPG---IG--EFQCYDRYLQQSLRKAAKLRG 462 (681)
Q Consensus 402 F~~~~g~~vI~eI~VGLGPaGELRYPSYp~~~GW~~PG---iG--EFQCYDky~~a~lr~aA~~~G 462 (681)
+.-.+.. . -..+||++=- ++ ...+-+.-..+.|++++++..
T Consensus 319 ~~~Wl~~-------------------~-~giDG~RlDva~~v~~~~~~~~~~~f~~~~~~~vk~~~ 364 (598)
T PRK10785 319 VRHWLKA-------------------P-YNIDGWRLDVVHMLGEGGGARNNLQHVAGITQAAKEEN 364 (598)
T ss_pred HHHhhcC-------------------C-CCCcEEEEecHhHhccccCccccHHHHHHHHHHHHhhC
Confidence 3333321 0 0237888722 22 223444566778888888765
No 46
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=83.16 E-value=3 Score=41.17 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccC-CCccc-------------cchHHHHHHHHHHHcCCcEEEEEEe-ecc
Q 005715 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGW-NPQKY-------------AWSGYRELFNIIREFNLKVQVVMAF-HEY 332 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~-~p~~Y-------------dWsgY~~l~~mvr~~GLKvqvVmSF-HqC 332 (681)
|.+.|.+.|..||++||++|.+-- +.|.. +..-| .+..+++|++.|++.||||..=+-+ |-+
T Consensus 2 d~~gi~~kLdyl~~lGv~~I~l~P---i~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~ 78 (316)
T PF00128_consen 2 DFRGIIDKLDYLKDLGVNAIWLSP---IFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTS 78 (316)
T ss_dssp SHHHHHHTHHHHHHHTESEEEESS----EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEE
T ss_pred CHHHHHHhhHHHHHcCCCceeccc---ccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccc
Confidence 457899999999999999998852 22321 11112 3567899999999999999554444 654
Q ss_pred C
Q 005715 333 G 333 (681)
Q Consensus 333 G 333 (681)
.
T Consensus 79 ~ 79 (316)
T PF00128_consen 79 D 79 (316)
T ss_dssp T
T ss_pred c
Confidence 4
No 47
>PRK01060 endonuclease IV; Provisional
Probab=82.82 E-value=2.3 Score=43.13 Aligned_cols=63 Identities=3% Similarity=0.017 Sum_probs=42.4
Q ss_pred EeeceeecCCccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcE
Q 005715 254 MLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (681)
Q Consensus 254 MLPLd~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKv 323 (681)
|+++++.++ -.+.++..|+.++++|+++|++.+....- ..+..++=...+++-+++++.||++
T Consensus 1 ~~~~g~~~~-----~~~~~~~~l~~~~~~G~d~vEl~~~~p~~--~~~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 1 MKLIGAHVS-----AAGGLEGAVAEAAEIGANAFMIFTGNPQQ--WKRKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred CCeEEEeee-----cCCCHHHHHHHHHHcCCCEEEEECCCCCC--CcCCCCCHHHHHHHHHHHHHcCCCC
Confidence 667777653 12238999999999999999996541100 0112223334677888999999997
No 48
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=82.75 E-value=5.4 Score=41.77 Aligned_cols=90 Identities=18% Similarity=0.244 Sum_probs=65.9
Q ss_pred CCccEEEEeeceeecCCccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEE
Q 005715 247 PYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (681)
Q Consensus 247 ~~vpVyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvV 326 (681)
..+|+.+|.=...|- .-.+++-++.+|++||+||-+. + .-+...+++++.++++||++.+.
T Consensus 88 ~~~p~vlm~Y~N~i~-------~~G~e~f~~~~~~aGvdGviip----------D--Lp~ee~~~~~~~~~~~gl~~I~l 148 (258)
T PRK13111 88 PTIPIVLMTYYNPIF-------QYGVERFAADAAEAGVDGLIIP----------D--LPPEEAEELRAAAKKHGLDLIFL 148 (258)
T ss_pred CCCCEEEEecccHHh-------hcCHHHHHHHHHHcCCcEEEEC----------C--CCHHHHHHHHHHHHHcCCcEEEE
Confidence 457888888776553 2367778999999999999996 1 12467889999999999999654
Q ss_pred EEeeccCCCCCCCccccCChhHHhhhccCCC-eEeecCCCCc
Q 005715 327 MAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREGRR 367 (681)
Q Consensus 327 mSFHqCGGNVGD~~~IpLP~WV~e~g~~~PD-I~ytDr~G~r 367 (681)
++- + +.+..+..+.+..++ |++....|..
T Consensus 149 vap-----------~-t~~eri~~i~~~s~gfIY~vs~~GvT 178 (258)
T PRK13111 149 VAP-----------T-TTDERLKKIASHASGFVYYVSRAGVT 178 (258)
T ss_pred eCC-----------C-CCHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 443 2 346788888788888 6666776643
No 49
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=80.97 E-value=2.7 Score=44.36 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCc---cccchHHHHHHHHHHHcCCcEEEEEEeeccCC
Q 005715 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQ---KYAWSGYRELFNIIREFNLKVQVVMAFHEYGA 334 (681)
Q Consensus 273 ~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~---~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGG 334 (681)
...++++.++|+++|.+.--|+.-.--+|. +|-+-+++++++-+++.|... + .|-||.
T Consensus 183 ~~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~--i--lH~CG~ 243 (340)
T TIGR01463 183 IAYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGIT--V--LHICGF 243 (340)
T ss_pred HHHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCce--E--EEECCC
Confidence 445567789999999888778632223455 455999999999999887432 3 688973
No 50
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=80.66 E-value=1.5 Score=48.04 Aligned_cols=118 Identities=14% Similarity=0.322 Sum_probs=73.7
Q ss_pred eEEEeee---eeeeccCCCccccchHHHHHHHHHHHcCCcE--EEEEEeeccCCCCCCCccccCChhHHhhhccCCCeEe
Q 005715 286 GVIVNCW---WGIVEGWNPQKYAWSGYRELFNIIREFNLKV--QVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFF 360 (681)
Q Consensus 286 GV~vDVW---WGiVE~~~p~~YdWsgY~~l~~mvr~~GLKv--qvVmSFHqCGGNVGD~~~IpLP~WV~e~g~~~PDI~y 360 (681)
.+-+.+| |..+|+ .+|+|+|..=+.+++.||++||++ +..+.-| ..|.|+..
T Consensus 59 n~iTpenemKwe~i~p-~~G~f~Fe~AD~ia~FAr~h~m~lhGHtLvW~~------------q~P~W~~~---------- 115 (345)
T COG3693 59 NQITPENEMKWEAIEP-ERGRFNFEAADAIANFARKHNMPLHGHTLVWHS------------QVPDWLFG---------- 115 (345)
T ss_pred cccccccccccccccC-CCCccCccchHHHHHHHHHcCCeeccceeeecc------------cCCchhhc----------
Confidence 3455666 999999 899999999999999999999987 3334333 37888862
Q ss_pred ecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHHhhhh-ccceEEEEecccCCcCCCCCCCCCCCCCccCC
Q 005715 361 TDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFV-AGLICAVEIGLGPSGELKYPSLSERMGWRYPG 439 (681)
Q Consensus 361 tDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g-~~vI~eI~VGLGPaGELRYPSYp~~~GW~~PG 439 (681)
|+ + .+.--.++++++...-..+|...+- =+||.|+ |--.| ++.++ -|..-+
T Consensus 116 -~e----------~--------~~~~~~~~~e~hI~tV~~rYkg~~~sWDVVNE~-vdd~g-------~~R~s-~w~~~~ 167 (345)
T COG3693 116 -DE----------L--------SKEALAKMVEEHIKTVVGRYKGSVASWDVVNEA-VDDQG-------SLRRS-AWYDGG 167 (345)
T ss_pred -cc----------c--------ChHHHHHHHHHHHHHHHHhccCceeEEEecccc-cCCCc-------hhhhh-hhhccC
Confidence 11 1 1111256676666665555554221 1244443 22222 44433 265545
Q ss_pred CcccccccHHHHHHHHHHHH
Q 005715 440 IGEFQCYDRYLQQSLRKAAK 459 (681)
Q Consensus 440 iGEFQCYDky~~a~lr~aA~ 459 (681)
.| ..|+..+|+.|.+
T Consensus 168 ~g-----pd~I~~aF~~Are 182 (345)
T COG3693 168 TG-----PDYIKLAFHIARE 182 (345)
T ss_pred Cc-----cHHHHHHHHHHHh
Confidence 44 4899999998877
No 51
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=80.40 E-value=21 Score=37.83 Aligned_cols=83 Identities=7% Similarity=0.209 Sum_probs=56.4
Q ss_pred cCHHHHHHHHHHHHHcC--cceEEEeeeeeeeccCCCcccc-----chHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCC
Q 005715 267 VDPELIRQEISHMKALN--VDGVIVNCWWGIVEGWNPQKYA-----WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGD 339 (681)
Q Consensus 267 ~~~~~l~~~L~~LK~aG--VdGV~vDVWWGiVE~~~p~~Yd-----WsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~ 339 (681)
.+.+.+.+-++.+++.| +|.|.+|.-|-. .-+.|. |-.-+++++-+++.|+|+ ++..+
T Consensus 27 ~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~----~~g~f~~d~~~FPdp~~mi~~l~~~G~k~--~l~i~--------- 91 (303)
T cd06592 27 INQETVLNYAQEIIDNGFPNGQIEIDDNWET----CYGDFDFDPTKFPDPKGMIDQLHDLGFRV--TLWVH--------- 91 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCCCeEEeCCCccc----cCCccccChhhCCCHHHHHHHHHHCCCeE--EEEEC---------
Confidence 46788999999999988 689999986532 123333 345788888899999998 66664
Q ss_pred ccccCChhHHhhhccCCCeEeecCCC
Q 005715 340 AWISLPQWVMEIGKGNQDIFFTDREG 365 (681)
Q Consensus 340 ~~IpLP~WV~e~g~~~PDI~ytDr~G 365 (681)
+.|..-.=+-+++ ...+.|+++..|
T Consensus 92 P~i~~~s~~~~e~-~~~g~~vk~~~g 116 (303)
T cd06592 92 PFINTDSENFREA-VEKGYLVSEPSG 116 (303)
T ss_pred CeeCCCCHHHHhh-hhCCeEEECCCC
Confidence 2232222233333 334788899888
No 52
>cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from
Probab=80.22 E-value=7.2 Score=41.12 Aligned_cols=95 Identities=13% Similarity=-0.012 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChh-
Q 005715 270 ELIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQW- 347 (681)
Q Consensus 270 ~~l~~~L~~LK~aGVdGV~vDVW-WGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpLP~W- 347 (681)
+++.+.+++|.++|++.|.+|.= |+.+=...+......+.+++.+.+.+.+..+++ .+|-|.||....-...-+-|
T Consensus 155 ~~~~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v--~lHiC~G~~~~~~~~~~~y~~ 232 (332)
T cd03311 155 LALREEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQI--HTHICYGNFRSTWAAEGGYEP 232 (332)
T ss_pred HHHHHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCCCCCEE--EEEEECCCCcccccccCcHHH
Confidence 57788889999999999999984 765443223345666777788777765655543 46999999743322222333
Q ss_pred HHhh-hccCCCeEeecCCCC
Q 005715 348 VMEI-GKGNQDIFFTDREGR 366 (681)
Q Consensus 348 V~e~-g~~~PDI~ytDr~G~ 366 (681)
+++. .+..-|.++.|-...
T Consensus 233 i~~~l~~~~vd~~~le~~~~ 252 (332)
T cd03311 233 IAEYIFELDVDVFFLEYDNS 252 (332)
T ss_pred HHHHHHhCCCCEEEEEEcCC
Confidence 2222 245578777666543
No 53
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=78.74 E-value=20 Score=41.54 Aligned_cols=65 Identities=18% Similarity=0.382 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCcceEEE-eee---------------eeeecc--CC-Cccc---------cchHHHHHHHHHHHcC
Q 005715 269 PELIRQEISHMKALNVDGVIV-NCW---------------WGIVEG--WN-PQKY---------AWSGYRELFNIIREFN 320 (681)
Q Consensus 269 ~~~l~~~L~~LK~aGVdGV~v-DVW---------------WGiVE~--~~-p~~Y---------dWsgY~~l~~mvr~~G 320 (681)
...+...|..||++||+.|.+ +|. ||--=. -. ...| ....+++|++.+++.|
T Consensus 163 ~~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~G 242 (605)
T TIGR02104 163 PNGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENG 242 (605)
T ss_pred cccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCC
Confidence 346778899999999999976 222 442100 00 0001 0356999999999999
Q ss_pred CcEEEEEEe-eccC
Q 005715 321 LKVQVVMAF-HEYG 333 (681)
Q Consensus 321 LKvqvVmSF-HqCG 333 (681)
|+|..=+-| |-|+
T Consensus 243 i~VilDvV~NH~~~ 256 (605)
T TIGR02104 243 IRVIMDVVYNHTYS 256 (605)
T ss_pred CEEEEEEEcCCccC
Confidence 999777777 5443
No 54
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=78.38 E-value=3.4 Score=44.89 Aligned_cols=79 Identities=10% Similarity=0.195 Sum_probs=53.1
Q ss_pred CccEEEEeeceeecCC-----cc----ccCHHHHHHH-----------HHHHHHcCcce-EEEeee--ee-eeccCCCcc
Q 005715 248 YIPVYVMLANHVINNF-----CQ----LVDPELIRQE-----------ISHMKALNVDG-VIVNCW--WG-IVEGWNPQK 303 (681)
Q Consensus 248 ~vpVyVMLPLd~V~~~-----~~----l~~~~~l~~~-----------L~~LK~aGVdG-V~vDVW--WG-iVE~~~p~~ 303 (681)
.+-..+..|++++... +- +.+++.+.+- +++..++|+++ |.+..+ |+ ++. |.+
T Consensus 172 pi~~~~~gPf~~la~~l~g~~~~~~~l~~~Pe~v~~ll~~~td~~i~~~~~~ieaGa~~~i~i~~~~s~~~~ls---p~~ 248 (378)
T cd03308 172 NAGGVSEAPFDIIGDYLRGFKGISIDLRRRPEKVAEACEAVTPLMIKMGTATAPAPYPGPVFTPIPLHLPPFLR---PKQ 248 (378)
T ss_pred ccceeEeCChHHHHHHHhCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEecccccCccC---HHH
Confidence 3556788899855421 11 3356555444 44456789998 777776 43 444 555
Q ss_pred cc---chHHHHHHHHHHHcCCcEEEEEEeeccC
Q 005715 304 YA---WSGYRELFNIIREFNLKVQVVMAFHEYG 333 (681)
Q Consensus 304 Yd---WsgY~~l~~mvr~~GLKvqvVmSFHqCG 333 (681)
|+ |-+++++++-+++.|.++ |+ |-||
T Consensus 249 f~ef~~P~~k~i~~~i~~~g~~~--il--h~cG 277 (378)
T cd03308 249 FEKFYWPSFKKVVEGLAARGQRI--FL--FFEG 277 (378)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCE--EE--EcCC
Confidence 55 999999999999988665 44 9998
No 55
>PLN02591 tryptophan synthase
Probab=76.74 E-value=12 Score=39.13 Aligned_cols=90 Identities=11% Similarity=0.146 Sum_probs=65.0
Q ss_pred CCccEEEEeeceeecCCccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEE
Q 005715 247 PYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (681)
Q Consensus 247 ~~vpVyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvV 326 (681)
..+|+.+|.=...|- .-.+++=++.+|++||+||-+.= .-+..-.++.+.++++||.....
T Consensus 77 ~~~p~ilm~Y~N~i~-------~~G~~~F~~~~~~aGv~GviipD------------LP~ee~~~~~~~~~~~gl~~I~l 137 (250)
T PLN02591 77 LSCPIVLFTYYNPIL-------KRGIDKFMATIKEAGVHGLVVPD------------LPLEETEALRAEAAKNGIELVLL 137 (250)
T ss_pred CCCCEEEEecccHHH-------HhHHHHHHHHHHHcCCCEEEeCC------------CCHHHHHHHHHHHHHcCCeEEEE
Confidence 346888888776653 24788889999999999999971 23467778999999999999555
Q ss_pred EEeeccCCCCCCCccccCChhHHhhhccCCC-eEeecCCCCc
Q 005715 327 MAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREGRR 367 (681)
Q Consensus 327 mSFHqCGGNVGD~~~IpLP~WV~e~g~~~PD-I~ytDr~G~r 367 (681)
.+- + +-+..+..+.+.-++ |++..+.|..
T Consensus 138 v~P-----------t-t~~~ri~~ia~~~~gFIY~Vs~~GvT 167 (250)
T PLN02591 138 TTP-----------T-TPTERMKAIAEASEGFVYLVSSTGVT 167 (250)
T ss_pred eCC-----------C-CCHHHHHHHHHhCCCcEEEeeCCCCc
Confidence 543 1 245788888777777 4444655543
No 56
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=76.15 E-value=10 Score=42.25 Aligned_cols=79 Identities=22% Similarity=0.417 Sum_probs=50.0
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeee-----------eeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCC
Q 005715 267 VDPELIRQEISHMKALNVDGVIVNCWW-----------GIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGAN 335 (681)
Q Consensus 267 ~~~~~l~~~L~~LK~aGVdGV~vDVWW-----------GiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGN 335 (681)
.+.+.+.+.++++|++|++-+.||-=| |.-+. .+.+|= +|.+.|++-|++.|||. =|.|=----|
T Consensus 55 ~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~-~~~kFP-~Gl~~l~~~i~~~Gmk~--GlW~ePe~v~ 130 (394)
T PF02065_consen 55 ITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEP-DPKKFP-NGLKPLADYIHSLGMKF--GLWFEPEMVS 130 (394)
T ss_dssp --HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECB-BTTTST-THHHHHHHHHHHTT-EE--EEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeE-ChhhhC-CcHHHHHHHHHHCCCeE--EEEecccccc
Confidence 378899999999999999999998766 33333 234442 58999999999999999 4444211112
Q ss_pred CCCCccccCChhHH
Q 005715 336 DSGDAWISLPQWVM 349 (681)
Q Consensus 336 VGD~~~IpLP~WV~ 349 (681)
.+-...-.-|.|+.
T Consensus 131 ~~S~l~~~hPdw~l 144 (394)
T PF02065_consen 131 PDSDLYREHPDWVL 144 (394)
T ss_dssp SSSCHCCSSBGGBT
T ss_pred chhHHHHhCcccee
Confidence 22233334677776
No 57
>smart00642 Aamy Alpha-amylase domain.
Probab=75.94 E-value=11 Score=36.84 Aligned_cols=69 Identities=16% Similarity=0.203 Sum_probs=48.6
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeecc-CCCccc-------------cchHHHHHHHHHHHcCCcEEEEEEeec
Q 005715 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEG-WNPQKY-------------AWSGYRELFNIIREFNLKVQVVMAFHE 331 (681)
Q Consensus 266 l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~-~~p~~Y-------------dWsgY~~l~~mvr~~GLKvqvVmSFHq 331 (681)
.-+.+.+.+.|..||++||++|-+.-.+-..+. .....| ....+++|++.|++.|+||..=+-+--
T Consensus 15 ~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 15 GGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred CcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 456799999999999999999977554322220 001111 346789999999999999976666655
Q ss_pred cCC
Q 005715 332 YGA 334 (681)
Q Consensus 332 CGG 334 (681)
|+.
T Consensus 95 ~~~ 97 (166)
T smart00642 95 TSD 97 (166)
T ss_pred CCC
Confidence 554
No 58
>PLN02361 alpha-amylase
Probab=75.34 E-value=9.1 Score=42.68 Aligned_cols=66 Identities=9% Similarity=0.157 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccc-------------hHHHHHHHHHHHcCCcEEEEEEe-eccC
Q 005715 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAW-------------SGYRELFNIIREFNLKVQVVMAF-HEYG 333 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdW-------------sgY~~l~~mvr~~GLKvqvVmSF-HqCG 333 (681)
-++.|.+.|..||++||++|-+.--. |..++..|+- +.+++|++.+++.|+||.+=+-+ |-||
T Consensus 27 ~w~~i~~kl~~l~~lG~t~iwl~P~~---~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~~g 103 (401)
T PLN02361 27 WWRNLEGKVPDLAKSGFTSAWLPPPS---QSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHRVG 103 (401)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCC---cCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEccccccC
Confidence 57899999999999999999876532 3323333333 46899999999999999654444 7777
Q ss_pred CCC
Q 005715 334 AND 336 (681)
Q Consensus 334 GNV 336 (681)
..-
T Consensus 104 ~~~ 106 (401)
T PLN02361 104 TTQ 106 (401)
T ss_pred CCC
Confidence 543
No 59
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=75.27 E-value=5.1 Score=40.90 Aligned_cols=56 Identities=18% Similarity=0.136 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccch--HHHHHHHHHHHcCCcEEEE
Q 005715 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS--GYRELFNIIREFNLKVQVV 326 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWs--gY~~l~~mvr~~GLKvqvV 326 (681)
..-.|...|+.++++|+++|++.++.. + ..+..++|+ .-.++.++++++||+|..+
T Consensus 14 ~~~~~~e~l~~~~~~G~~~VEl~~~~~--~-~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~ 71 (279)
T TIGR00542 14 KGECWLERLQLAKTCGFDFVEMSVDET--D-DRLSRLDWSREQRLALVNAIIETGVRIPSM 71 (279)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEecCCc--c-chhhccCCCHHHHHHHHHHHHHcCCCceee
Confidence 346789999999999999999965432 1 123344544 4667888999999999543
No 60
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=75.00 E-value=20 Score=37.95 Aligned_cols=91 Identities=23% Similarity=0.276 Sum_probs=64.5
Q ss_pred CCCccEEEEeeceeecCCccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEE
Q 005715 246 TPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (681)
Q Consensus 246 ~~~vpVyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqv 325 (681)
...+|+.+|.=.+.|-. ..+++=++.+|++||+||.+.= =| +....++.+.++++||++..
T Consensus 85 ~~~~pivlm~Y~N~i~~-------~G~e~F~~~~~~aGvdGlIipD--------LP----~ee~~~~~~~~~~~gl~~I~ 145 (259)
T PF00290_consen 85 EPDIPIVLMTYYNPIFQ-------YGIERFFKEAKEAGVDGLIIPD--------LP----PEESEELREAAKKHGLDLIP 145 (259)
T ss_dssp CTSSEEEEEE-HHHHHH-------H-HHHHHHHHHHHTEEEEEETT--------SB----GGGHHHHHHHHHHTT-EEEE
T ss_pred CCCCCEEEEeeccHHhc-------cchHHHHHHHHHcCCCEEEEcC--------CC----hHHHHHHHHHHHHcCCeEEE
Confidence 56799999998876532 4677789999999999998852 22 35668899999999999966
Q ss_pred EEEeeccCCCCCCCccccCChhHHhhhccCCC-eEeecCCCCc
Q 005715 326 VMAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREGRR 367 (681)
Q Consensus 326 VmSFHqCGGNVGD~~~IpLP~WV~e~g~~~PD-I~ytDr~G~r 367 (681)
..+=. ..+..+..+.+.-+. |++....|..
T Consensus 146 lv~p~------------t~~~Ri~~i~~~a~gFiY~vs~~GvT 176 (259)
T PF00290_consen 146 LVAPT------------TPEERIKKIAKQASGFIYLVSRMGVT 176 (259)
T ss_dssp EEETT------------S-HHHHHHHHHH-SSEEEEESSSSSS
T ss_pred EECCC------------CCHHHHHHHHHhCCcEEEeeccCCCC
Confidence 66542 357788887777667 5556777753
No 61
>PLN02229 alpha-galactosidase
Probab=74.57 E-value=5.3 Score=45.11 Aligned_cols=70 Identities=14% Similarity=0.285 Sum_probs=49.9
Q ss_pred cCHHHHHHHHHH-----HHHcCcceEEEeeeeeeeccCC-------CccccchHHHHHHHHHHHcCCcEEEEE--Eeecc
Q 005715 267 VDPELIRQEISH-----MKALNVDGVIVNCWWGIVEGWN-------PQKYAWSGYRELFNIIREFNLKVQVVM--AFHEY 332 (681)
Q Consensus 267 ~~~~~l~~~L~~-----LK~aGVdGV~vDVWWGiVE~~~-------p~~YdWsgY~~l~~mvr~~GLKvqvVm--SFHqC 332 (681)
.+++.+.+...+ ||.+|.+.|.||.=|...++.. |.+|- +|.+.|++.+++.|||+=... ....|
T Consensus 77 i~E~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~rFP-~G~k~ladyiH~~GlKfGIy~d~G~~TC 155 (427)
T PLN02229 77 INETVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPKTFP-SGIKLLADYVHSKGLKLGIYSDAGVFTC 155 (427)
T ss_pred cCHHHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChhhcC-CcHHHHHHHHHHCCCceEEeccCCCccc
Confidence 477888888887 5999999999988664333322 33444 689999999999999983322 33457
Q ss_pred CCCCC
Q 005715 333 GANDS 337 (681)
Q Consensus 333 GGNVG 337 (681)
+|+.|
T Consensus 156 ~~~pG 160 (427)
T PLN02229 156 QVRPG 160 (427)
T ss_pred CCCCC
Confidence 66544
No 62
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=73.52 E-value=7 Score=39.72 Aligned_cols=67 Identities=16% Similarity=0.165 Sum_probs=46.1
Q ss_pred eeceeecCCccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchH--HHHHHHHHHHcCCcEEEE
Q 005715 255 LANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSG--YRELFNIIREFNLKVQVV 326 (681)
Q Consensus 255 LPLd~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsg--Y~~l~~mvr~~GLKvqvV 326 (681)
+||++... .++..-.|+..++.+|++|+++|++.+. . .. .....++|+. .+++-++++++||+|..+
T Consensus 8 ~~~~~~~~--~~~~~~~~~e~~~~~~~~G~~~iEl~~~-~-~~-~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~ 76 (283)
T PRK13209 8 IPLGIYEK--ALPAGECWLEKLAIAKTAGFDFVEMSVD-E-SD-ERLARLDWSREQRLALVNALVETGFRVNSM 76 (283)
T ss_pred ccceeecc--cCCCCCCHHHHHHHHHHcCCCeEEEecC-c-cc-cchhccCCCHHHHHHHHHHHHHcCCceeEE
Confidence 46665532 2444557899999999999999999643 0 00 0123456664 668899999999999654
No 63
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=72.86 E-value=3.4 Score=38.70 Aligned_cols=46 Identities=17% Similarity=0.144 Sum_probs=36.1
Q ss_pred HHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEE
Q 005715 276 ISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (681)
Q Consensus 276 L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvV 326 (681)
|+.++++|+++|++..++..-... . -...+++.++++++||+|..+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~-~----~~~~~~~~~~~~~~gl~i~~~ 46 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDE-K----DDEAEELRRLLEDYGLKIASL 46 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTH-H----HHHHHHHHHHHHHTTCEEEEE
T ss_pred ChHHHHcCCCEEEEecCCCccccc-c----hHHHHHHHHHHHHcCCeEEEE
Confidence 688999999999999987644421 1 456889999999999997433
No 64
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=71.15 E-value=10 Score=38.91 Aligned_cols=55 Identities=13% Similarity=0.014 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCcceEEEeeeeee---eccCCCccccchHHHHHHHHHHHcCCcEEEEEEe
Q 005715 273 RQEISHMKALNVDGVIVNCWWGI---VEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (681)
Q Consensus 273 ~~~L~~LK~aGVdGV~vDVWWGi---VE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSF 329 (681)
+..|+.||++|++.|.+++= +. .+.-. +..+|..+.+.++.++++|+++.+-|-+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E-~~~~~~~~i~-~~~s~~~~~~ai~~l~~~Gi~v~~~~i~ 180 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLD-TSQEFYSNII-STHTYDDRVDTLENAKKAGLKVCSGGIF 180 (296)
T ss_pred HHHHHHHHHcCCCEEEEccc-CCHHHHhhcc-CCCCHHHHHHHHHHHHHcCCEEEEeEEE
Confidence 46788999999999988743 21 11111 2468899999999999999998655545
No 65
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=70.72 E-value=23 Score=37.22 Aligned_cols=88 Identities=15% Similarity=0.344 Sum_probs=60.1
Q ss_pred ccCHHHHHHHHHHHHHcC--cceEEEeeeeeeeccCCCccccch-----HHHHHHHHHHHcCCcEEEEEEeeccCCCCCC
Q 005715 266 LVDPELIRQEISHMKALN--VDGVIVNCWWGIVEGWNPQKYAWS-----GYRELFNIIREFNLKVQVVMAFHEYGANDSG 338 (681)
Q Consensus 266 l~~~~~l~~~L~~LK~aG--VdGV~vDVWWGiVE~~~p~~YdWs-----gY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD 338 (681)
..+.+.+.+-++.++++| +|.|.+|.=|- ....-+.|+|. --+++++-+++.|+|+ ++..|-+ |+.
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~--~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~--~~~~~P~---i~~ 92 (308)
T cd06593 20 YYDEEEVNEFADGMRERNLPCDVIHLDCFWM--KEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKV--CLWINPY---IAQ 92 (308)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccc--cCCcceeeEECcccCCCHHHHHHHHHHCCCeE--EEEecCC---CCC
Confidence 467889999999999999 88999998443 21111245555 6889999999999998 6666632 221
Q ss_pred CccccCChhHHhhhccCCCeEeecCCCCc
Q 005715 339 DAWISLPQWVMEIGKGNQDIFFTDREGRR 367 (681)
Q Consensus 339 ~~~IpLP~WV~e~g~~~PDI~ytDr~G~r 367 (681)
+ -| +-+++ +.++.|+++.+|..
T Consensus 93 ~----~~--~~~e~-~~~g~~v~~~~g~~ 114 (308)
T cd06593 93 K----SP--LFKEA-AEKGYLVKKPDGSV 114 (308)
T ss_pred C----ch--hHHHH-HHCCeEEECCCCCe
Confidence 1 12 23333 34688999888764
No 66
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=68.51 E-value=12 Score=37.74 Aligned_cols=51 Identities=16% Similarity=0.451 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc--cc--hHHHHHHHHHHHcCCcEEEEEE
Q 005715 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY--AW--SGYRELFNIIREFNLKVQVVMA 328 (681)
Q Consensus 271 ~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Y--dW--sgY~~l~~mvr~~GLKvqvVmS 328 (681)
-++..|+.++++|+++|++ |+. .+..| ++ ..-+++.++++++||+|..+..
T Consensus 14 ~l~~~l~~~~~~G~~~vEl---~~~----~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~ 68 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEI---WGG----RPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTP 68 (275)
T ss_pred CHHHHHHHHHHcCCCEEEE---ccC----CccccccccCchHHHHHHHHHHHcCCeEEEecC
Confidence 5899999999999999998 321 11111 12 2467788899999999844333
No 67
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=68.12 E-value=10 Score=43.46 Aligned_cols=61 Identities=11% Similarity=0.331 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccch-----------------HHHHHHHHHHHcCCcEEEEEEee
Q 005715 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS-----------------GYRELFNIIREFNLKVQVVMAFH 330 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWs-----------------gY~~l~~mvr~~GLKvqvVmSFH 330 (681)
+..++...|..||++||++|.+-= +.| .++.++|- .+++|++.+++.||+|..=+-|-
T Consensus 109 ~~~gi~~~l~yl~~LGv~~i~L~P---i~~--~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~N 183 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGITAIELMP---VAQ--FPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYN 183 (542)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCc---ccc--CCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccC
Confidence 448889999999999999997632 122 24445564 38999999999999996555563
Q ss_pred ccC
Q 005715 331 EYG 333 (681)
Q Consensus 331 qCG 333 (681)
-|+
T Consensus 184 H~~ 186 (542)
T TIGR02402 184 HFG 186 (542)
T ss_pred CCC
Confidence 344
No 68
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=68.05 E-value=17 Score=39.74 Aligned_cols=86 Identities=13% Similarity=0.270 Sum_probs=57.3
Q ss_pred ccCHHHHHHHHHHHHHcC--cceEEEeeeeeeeccCCCccccch-----HHHHHHHHHHHcCCcEEEEEEeeccCCCCCC
Q 005715 266 LVDPELIRQEISHMKALN--VDGVIVNCWWGIVEGWNPQKYAWS-----GYRELFNIIREFNLKVQVVMAFHEYGANDSG 338 (681)
Q Consensus 266 l~~~~~l~~~L~~LK~aG--VdGV~vDVWWGiVE~~~p~~YdWs-----gY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD 338 (681)
..+.+.+.+-++.+++.| +|++.+|.||+.- -+.|.|+ ..+++++.+++.|+|+ ++..|
T Consensus 39 ~~~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~~----~~~f~~d~~~FPd~~~~~~~l~~~G~~~--~~~~~-------- 104 (441)
T PF01055_consen 39 YYNQDEVREVIDRYRSNGIPLDVIWIDDDYQDG----YGDFTWDPERFPDPKQMIDELHDQGIKV--VLWVH-------- 104 (441)
T ss_dssp BTSHHHHHHHHHHHHHTT--EEEEEE-GGGSBT----TBTT-B-TTTTTTHHHHHHHHHHTT-EE--EEEEE--------
T ss_pred CCCHHHHHHHHHHHHHcCCCccceecccccccc----ccccccccccccchHHHHHhHhhCCcEE--EEEee--------
Confidence 456888999999999865 6899999998762 2245554 5799999999999998 67776
Q ss_pred CccccCChh---HHhhhccCCCeEeecCCCCc
Q 005715 339 DAWISLPQW---VMEIGKGNQDIFFTDREGRR 367 (681)
Q Consensus 339 ~~~IpLP~W---V~e~g~~~PDI~ytDr~G~r 367 (681)
+.|....- ..+.+++ .++++++.+|..
T Consensus 105 -P~v~~~~~~~~~~~~~~~-~~~~v~~~~g~~ 134 (441)
T PF01055_consen 105 -PFVSNDSPDYENYDEAKE-KGYLVKNPDGSP 134 (441)
T ss_dssp -SEEETTTTB-HHHHHHHH-TT-BEBCTTSSB
T ss_pred -cccCCCCCcchhhhhHhh-cCceeecccCCc
Confidence 33433332 2233333 388999999944
No 69
>PHA00442 host recBCD nuclease inhibitor
Probab=67.85 E-value=5.2 Score=33.82 Aligned_cols=27 Identities=26% Similarity=0.607 Sum_probs=22.5
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHc
Q 005715 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREF 319 (681)
Q Consensus 274 ~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~ 319 (681)
.-|.+|++.||| ||+||.+..+|+.+.
T Consensus 30 ~~L~~Lea~GVD-------------------NW~Gy~eA~emv~~e 56 (59)
T PHA00442 30 EFLKALRACGVD-------------------NWDGYMDAVEMVAEE 56 (59)
T ss_pred HHHHHHHHcCCc-------------------chhhHHHHHHHHhhh
Confidence 457888888887 899999999998653
No 70
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=67.74 E-value=24 Score=41.10 Aligned_cols=71 Identities=20% Similarity=0.199 Sum_probs=60.6
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCC--ccccch---HHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCcc
Q 005715 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNP--QKYAWS---GYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (681)
Q Consensus 267 ~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p--~~YdWs---gY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~ 341 (681)
...-..+.+++.||++||+.-...+-|..+=|.+. +..|.. .|+.|++-+.+.|++-.|-| ||-
T Consensus 88 D~Yh~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL-fHw---------- 156 (524)
T KOG0626|consen 88 DFYHRYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL-FHW---------- 156 (524)
T ss_pred hhhhhhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE-ecC----------
Confidence 34567899999999999999999999999999877 557775 59999999999999997766 462
Q ss_pred ccCChhHH
Q 005715 342 ISLPQWVM 349 (681)
Q Consensus 342 IpLP~WV~ 349 (681)
-||+|+.
T Consensus 157 -DlPq~Le 163 (524)
T KOG0626|consen 157 -DLPQALE 163 (524)
T ss_pred -CCCHHHH
Confidence 5999997
No 71
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=67.42 E-value=47 Score=34.77 Aligned_cols=77 Identities=16% Similarity=0.077 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhHHhhh
Q 005715 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIG 352 (681)
Q Consensus 273 ~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpLP~WV~e~g 352 (681)
..+|+.....||+.|.+-+ ...++....+.++.+++.|++|.+-+.. ..-.-|..+.+..
T Consensus 85 ~~~l~~a~~~gv~~iri~~----------~~~~~~~~~~~i~~ak~~G~~v~~~~~~----------a~~~~~~~~~~~~ 144 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAF----------HKHEFDEALPLIKAIKEKGYEVFFNLMA----------ISGYSDEELLELL 144 (266)
T ss_pred HHHHHHHhcCCcCEEEEec----------ccccHHHHHHHHHHHHHCCCeEEEEEEe----------ecCCCHHHHHHHH
Confidence 3467888899999999865 1237889999999999999998766555 1112466766642
Q ss_pred ----ccCCC-eEeecCCCCccc
Q 005715 353 ----KGNQD-IFFTDREGRRNT 369 (681)
Q Consensus 353 ----~~~PD-I~ytDr~G~rn~ 369 (681)
+.-+| |.+.|-.|.-++
T Consensus 145 ~~~~~~g~~~i~l~DT~G~~~P 166 (266)
T cd07944 145 ELVNEIKPDVFYIVDSFGSMYP 166 (266)
T ss_pred HHHHhCCCCEEEEecCCCCCCH
Confidence 33455 777888886544
No 72
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=67.12 E-value=6.5 Score=41.42 Aligned_cols=55 Identities=11% Similarity=0.059 Sum_probs=40.5
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCcccc---chHHHHHHHHHHHcCCcEEEEEEeeccCC
Q 005715 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGA 334 (681)
Q Consensus 274 ~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKvqvVmSFHqCGG 334 (681)
+-++++.++|+|+|.+.--|+-..--+|..|. +-+++++++-+++ + . +| .|-||+
T Consensus 175 ~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~-~-~--~i--lh~cG~ 232 (326)
T cd03307 175 EYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHG-C-P--TI--LHICGN 232 (326)
T ss_pred HHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhc-C-C--cE--EEECCC
Confidence 45566678899999998889854322577777 9999999999998 2 1 23 588974
No 73
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=67.01 E-value=12 Score=43.66 Aligned_cols=56 Identities=9% Similarity=0.115 Sum_probs=40.7
Q ss_pred CHHHHHHHH-HHHHHcCcceEEE-eeeeeeeccCCCccccc-----------------hHHHHHHHHHHHcCCcEEEEEE
Q 005715 268 DPELIRQEI-SHMKALNVDGVIV-NCWWGIVEGWNPQKYAW-----------------SGYRELFNIIREFNLKVQVVMA 328 (681)
Q Consensus 268 ~~~~l~~~L-~~LK~aGVdGV~v-DVWWGiVE~~~p~~YdW-----------------sgY~~l~~mvr~~GLKvqvVmS 328 (681)
+.+++...| ..||++||+.|.+ +|... |...+| ..+++|++.+++.||+|..=+-
T Consensus 154 ~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~------~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V 227 (613)
T TIGR01515 154 SYRELADQLIPYVKELGFTHIELLPVAEH------PFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWV 227 (613)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccC------CCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 347888886 9999999999998 66432 212222 2489999999999999954444
Q ss_pred e
Q 005715 329 F 329 (681)
Q Consensus 329 F 329 (681)
|
T Consensus 228 ~ 228 (613)
T TIGR01515 228 P 228 (613)
T ss_pred c
Confidence 4
No 74
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=65.57 E-value=45 Score=36.27 Aligned_cols=90 Identities=14% Similarity=0.196 Sum_probs=59.2
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhHHhhh-
Q 005715 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIG- 352 (681)
Q Consensus 274 ~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpLP~WV~e~g- 352 (681)
.+|+...+.||+.|.|-.-+... ..-.+.++.+|+.|+++.+.+.. ..-.-|..+.+..
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~----------~~~~~~i~~ak~~G~~v~~~l~~----------a~~~~~e~l~~~a~ 151 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEA----------DVSEQHIGLARELGMDTVGFLMM----------SHMAPPEKLAEQAK 151 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchH----------HHHHHHHHHHHHCCCeEEEEEEe----------ccCCCHHHHHHHHH
Confidence 56888999999999987744332 24589999999999999776664 1223456666542
Q ss_pred ---ccCCC-eEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHH
Q 005715 353 ---KGNQD-IFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEF 402 (681)
Q Consensus 353 ---~~~PD-I~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F 402 (681)
+.-+| |.++|-.|.- ||-++| ++.+.+++++
T Consensus 152 ~~~~~Ga~~i~i~DT~G~~------------------~P~~v~-~~v~~l~~~l 186 (337)
T PRK08195 152 LMESYGAQCVYVVDSAGAL------------------LPEDVR-DRVRALRAAL 186 (337)
T ss_pred HHHhCCCCEEEeCCCCCCC------------------CHHHHH-HHHHHHHHhc
Confidence 22344 6667777733 666655 4555555544
No 75
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=65.42 E-value=3.3e+02 Score=33.44 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=40.9
Q ss_pred ccCHHHH-HHHHHHHHHcCcceEEEeeeeeeeccCCCccccc-----------------hHHHHHHHHHHHcCCcEEEEE
Q 005715 266 LVDPELI-RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAW-----------------SGYRELFNIIREFNLKVQVVM 327 (681)
Q Consensus 266 l~~~~~l-~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdW-----------------sgY~~l~~mvr~~GLKvqvVm 327 (681)
+..-+++ +..|..||++||+.|.+-- +.|. +....| ..+++|++.+++.||+|..=+
T Consensus 246 ~gty~~~~~~~L~ylk~LG~t~I~LmP---i~e~--~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDv 320 (758)
T PLN02447 246 VNSYREFADDVLPRIKALGYNAVQLMA---IQEH--AYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDV 320 (758)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECC---cccc--CCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3444665 5669999999999998642 2232 111122 448999999999999994443
Q ss_pred Ee-ecc
Q 005715 328 AF-HEY 332 (681)
Q Consensus 328 SF-HqC 332 (681)
-+ |.|
T Consensus 321 V~nH~~ 326 (758)
T PLN02447 321 VHSHAS 326 (758)
T ss_pred cccccc
Confidence 34 443
No 76
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=65.17 E-value=14 Score=39.09 Aligned_cols=76 Identities=24% Similarity=0.338 Sum_probs=58.0
Q ss_pred CCccEEEEeec---eeecCCccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcE
Q 005715 247 PYIPVYVMLAN---HVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (681)
Q Consensus 247 ~~vpVyVMLPL---d~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKv 323 (681)
..+|||||.== |.|-++. ..+.++.+.+..|++|++||.+.+- ..+|+.|=.-.++|.+.+. ||.|
T Consensus 50 ~~ipv~~MIRPRgGdFvY~~~---E~~iM~~DI~~~~~lG~~GVV~G~l------t~dg~iD~~~le~Li~aA~--gL~v 118 (241)
T COG3142 50 SKIPVYVMIRPRGGDFVYSDD---ELEIMLEDIRLARELGVQGVVLGAL------TADGNIDMPRLEKLIEAAG--GLGV 118 (241)
T ss_pred cCCceEEEEecCCCCcccChH---HHHHHHHHHHHHHHcCCCcEEEeee------cCCCccCHHHHHHHHHHcc--CCce
Confidence 67999999732 2332222 3478999999999999999998764 4699999999999999887 6666
Q ss_pred EEEEEeeccC
Q 005715 324 QVVMAFHEYG 333 (681)
Q Consensus 324 qvVmSFHqCG 333 (681)
--=++|-.|-
T Consensus 119 TFHrAFD~~~ 128 (241)
T COG3142 119 TFHRAFDECP 128 (241)
T ss_pred eeehhhhhcC
Confidence 4467775554
No 77
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=64.61 E-value=31 Score=36.42 Aligned_cols=92 Identities=15% Similarity=0.256 Sum_probs=67.2
Q ss_pred CCccEEEEeeceeecCCccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEE
Q 005715 247 PYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (681)
Q Consensus 247 ~~vpVyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvV 326 (681)
..+|+.+|.=+..|- .-.+++-++.++++|||||-+.-. | +.-..++++.++++||+...+
T Consensus 90 ~~~p~vlm~Y~N~i~-------~~G~e~F~~~~~~aGvdgviipDL--------P----~ee~~~~~~~~~~~gi~~I~l 150 (263)
T CHL00200 90 IKAPIVIFTYYNPVL-------HYGINKFIKKISQAGVKGLIIPDL--------P----YEESDYLISVCNLYNIELILL 150 (263)
T ss_pred CCCCEEEEecccHHH-------HhCHHHHHHHHHHcCCeEEEecCC--------C----HHHHHHHHHHHHHcCCCEEEE
Confidence 446888887776553 246788899999999999998753 1 245789999999999999777
Q ss_pred EEeeccCCCCCCCccccCChhHHhhhccCCC-eEeecCCCCccc
Q 005715 327 MAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREGRRNT 369 (681)
Q Consensus 327 mSFHqCGGNVGD~~~IpLP~WV~e~g~~~PD-I~ytDr~G~rn~ 369 (681)
++-+ +.+..+..+.+.-.. |++..+.|..-.
T Consensus 151 v~Pt------------T~~eri~~i~~~a~gFIY~vS~~GvTG~ 182 (263)
T CHL00200 151 IAPT------------SSKSRIQKIARAAPGCIYLVSTTGVTGL 182 (263)
T ss_pred ECCC------------CCHHHHHHHHHhCCCcEEEEcCCCCCCC
Confidence 6652 356788877666554 666578776543
No 78
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=64.31 E-value=22 Score=33.06 Aligned_cols=56 Identities=21% Similarity=0.250 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHc-CCcEEEEEEee
Q 005715 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREF-NLKVQVVMAFH 330 (681)
Q Consensus 269 ~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~-GLKvqvVmSFH 330 (681)
.+.+...++.||..|||.|.+..= ++-...-+ ---.++++.+++++. |++| |..+|
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC--~~~~~~~~--~CP~~~~~~~~I~~~~gi~V--V~GTH 107 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSC--MVKGNPHG--PCPHIDEIKKIIEEKFGIEV--VEGTH 107 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCC--EecCCCCC--CCCCHHHHHHHHHHHhCCCE--eeecC
Confidence 678889999999999998877542 33221111 344499999999999 9987 98888
No 79
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=64.28 E-value=16 Score=40.32 Aligned_cols=57 Identities=16% Similarity=0.286 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeecc----CCCccccchHHHHHHHHHHHcCCcEEEEEEeec
Q 005715 273 RQEISHMKALNVDGVIVNCWWGIVEG----WNPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (681)
Q Consensus 273 ~~~L~~LK~aGVdGV~vDVWWGiVE~----~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHq 331 (681)
+.-|..||+.||.-|.+-||=-=-.. -+.|.=|-..--++.+-+++.|+|| .+-||-
T Consensus 66 qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKV--l~dFHY 126 (403)
T COG3867 66 QDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKV--LLDFHY 126 (403)
T ss_pred HHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEE--Eeeccc
Confidence 45688999999999999999321111 1234455566666777778889998 999994
No 80
>PRK10150 beta-D-glucuronidase; Provisional
Probab=64.18 E-value=1.8e+02 Score=33.70 Aligned_cols=45 Identities=13% Similarity=0.128 Sum_probs=35.8
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEE
Q 005715 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (681)
Q Consensus 267 ~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqv 325 (681)
.+.+.+.++|+.||++|++.|.+- ...+ -.+++++|-+.||-|..
T Consensus 310 ~~~~~~~~d~~l~K~~G~N~vR~s---h~p~-----------~~~~~~~cD~~GllV~~ 354 (604)
T PRK10150 310 LDEVLNVHDHNLMKWIGANSFRTS---HYPY-----------SEEMLDLADRHGIVVID 354 (604)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEec---cCCC-----------CHHHHHHHHhcCcEEEE
Confidence 577889999999999999999982 1111 14789999999998854
No 81
>PRK09875 putative hydrolase; Provisional
Probab=63.91 E-value=1.6e+02 Score=31.66 Aligned_cols=68 Identities=19% Similarity=0.223 Sum_probs=47.1
Q ss_pred CCccccCHHHHHHHHHHHHHcCcceEEEeee-eeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCc
Q 005715 262 NFCQLVDPELIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDA 340 (681)
Q Consensus 262 ~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVW-WGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~ 340 (681)
.+..+.+.+.....|+.+|++|+.-| ||+= .|+ |+ .-..|.++.++.|+.| |+++ |=-.
T Consensus 26 ~~~~l~~~~~~~~el~~~~~~Gg~ti-Vd~T~~g~------GR----d~~~l~~is~~tgv~I--v~~T-------G~y~ 85 (292)
T PRK09875 26 VDCRLDQYAFICQEMNDLMTRGVRNV-IEMTNRYM------GR----NAQFMLDVMRETGINV--VACT-------GYYQ 85 (292)
T ss_pred cccccccHHHHHHHHHHHHHhCCCeE-EecCCCcc------Cc----CHHHHHHHHHHhCCcE--EEcC-------cCCC
Confidence 34567889999999999999999887 4443 222 22 2467888999999888 7766 1112
Q ss_pred cccCChhHH
Q 005715 341 WISLPQWVM 349 (681)
Q Consensus 341 ~IpLP~WV~ 349 (681)
..-.|.|+.
T Consensus 86 ~~~~p~~~~ 94 (292)
T PRK09875 86 DAFFPEHVA 94 (292)
T ss_pred CccCCHHHh
Confidence 233788886
No 82
>PRK10658 putative alpha-glucosidase; Provisional
Probab=63.76 E-value=50 Score=39.30 Aligned_cols=86 Identities=14% Similarity=0.332 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHHHHcC--cceEEEeeeeeeeccCCCccccch-----HHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCc
Q 005715 268 DPELIRQEISHMKALN--VDGVIVNCWWGIVEGWNPQKYAWS-----GYRELFNIIREFNLKVQVVMAFHEYGANDSGDA 340 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aG--VdGV~vDVWWGiVE~~~p~~YdWs-----gY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~ 340 (681)
+.+.+..-++.+++.| +|.|.+|+.|.. ...-+.|.|. .-+++++-+++.|+|+ ++..+ +
T Consensus 281 ~e~~v~~~~~~~r~~~iP~d~i~lD~~w~~--~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~--~~~i~---------P 347 (665)
T PRK10658 281 DEATVNSFIDGMAERDLPLHVFHFDCFWMK--EFQWCDFEWDPRTFPDPEGMLKRLKAKGLKI--CVWIN---------P 347 (665)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEchhhhc--CCceeeeEEChhhCCCHHHHHHHHHHCCCEE--EEecc---------C
Confidence 5677888888888765 589999998842 1112345553 4578889999999998 55564 3
Q ss_pred cccCChhHHhhhccCCCeEeecCCCCc
Q 005715 341 WISLPQWVMEIGKGNQDIFFTDREGRR 367 (681)
Q Consensus 341 ~IpLP~WV~e~g~~~PDI~ytDr~G~r 367 (681)
.|..-.-+.+++.++ +.|.++.+|..
T Consensus 348 ~i~~~s~~f~e~~~~-gy~vk~~~G~~ 373 (665)
T PRK10658 348 YIAQKSPLFKEGKEK-GYLLKRPDGSV 373 (665)
T ss_pred CcCCCchHHHHHHHC-CeEEECCCCCE
Confidence 333323445555553 78999999865
No 83
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=62.91 E-value=8.6 Score=40.53 Aligned_cols=55 Identities=9% Similarity=0.102 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---chHHHHHHHHHHHcCCcEEEEEEeeccC
Q 005715 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYG 333 (681)
Q Consensus 273 ~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKvqvVmSFHqCG 333 (681)
...++++.++|+|+|.+..=|+.-.--+|..|. +-+++++++-+++. .++ .|-||
T Consensus 183 ~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~----~~i--lH~cG 240 (339)
T PRK06252 183 IEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGL----PTI--LHICG 240 (339)
T ss_pred HHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccC----CcE--EEECC
Confidence 445566778999999888777632222455555 88999999998875 233 57797
No 84
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.69 E-value=74 Score=36.23 Aligned_cols=127 Identities=15% Similarity=0.216 Sum_probs=79.8
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeee-eeee------ccCCCc-------cccchHHHHHHHHHHHcCCcEEEEEEee
Q 005715 265 QLVDPELIRQEISHMKALNVDGVIVNCW-WGIV------EGWNPQ-------KYAWSGYRELFNIIREFNLKVQVVMAFH 330 (681)
Q Consensus 265 ~l~~~~~l~~~L~~LK~aGVdGV~vDVW-WGiV------E~~~p~-------~YdWsgY~~l~~mvr~~GLKvqvVmSFH 330 (681)
.+.++..+...|..|..+|+.-|-+-|| +|.+ .+.... .=.|.-...+++.+++.||+|++=+.|-
T Consensus 59 v~~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~ 138 (418)
T COG1649 59 VLFQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPY 138 (418)
T ss_pred ccccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCChHHHHHHHHHhcCCeeeechhhc
Confidence 4779999999999999999999999999 8842 333322 1134555667777889999998877773
Q ss_pred ccCCCCCCCccccCChhHHhhhccCCCeEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHHhhhh
Q 005715 331 EYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFV 407 (681)
Q Consensus 331 qCGGNVGD~~~IpLP~WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g 407 (681)
--+ +---.-..-=|.|+. .+.|+-.|....|.. .-++ |++ .+..=++|+.+...+.-.-|.
T Consensus 139 ~~a-~~~s~~~~~~p~~~~---~~~~~~~~~~~~~~~----~~~~------ldP--g~Pevq~~i~~lv~evV~~Yd 199 (418)
T COG1649 139 RMA-PPTSPLTKRHPHWLT---TKRPGWVYVRHQGWG----KRVW------LDP--GIPEVQDFITSLVVEVVRNYD 199 (418)
T ss_pred ccC-CCCChhHhhCCCCcc---cCCCCeEEEecCCce----eeeE------eCC--CChHHHHHHHHHHHHHHhCCC
Confidence 211 100001112355555 344555555555432 1233 332 256778889888887776654
No 85
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=61.43 E-value=36 Score=35.01 Aligned_cols=87 Identities=21% Similarity=0.299 Sum_probs=56.3
Q ss_pred CccEEEEeeceeecCCccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEE
Q 005715 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (681)
Q Consensus 248 ~vpVyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVm 327 (681)
.+|+.+|.=++.+- ...+++-++.++++|++||.+.-- | + ....++++.++++|++..+.+
T Consensus 76 ~~pv~lm~y~n~~~-------~~G~~~fi~~~~~aG~~giiipDl--------~--~--ee~~~~~~~~~~~g~~~i~~i 136 (242)
T cd04724 76 TIPIVLMGYYNPIL-------QYGLERFLRDAKEAGVDGLIIPDL--------P--P--EEAEEFREAAKEYGLDLIFLV 136 (242)
T ss_pred CCCEEEEEecCHHH-------HhCHHHHHHHHHHCCCcEEEECCC--------C--H--HHHHHHHHHHHHcCCcEEEEe
Confidence 46788885554332 134677799999999999999521 1 1 367789999999999997766
Q ss_pred EeeccCCCCCCCccccCChhHHhhhccCCC-eEeecCCC
Q 005715 328 AFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREG 365 (681)
Q Consensus 328 SFHqCGGNVGD~~~IpLP~WV~e~g~~~PD-I~ytDr~G 365 (681)
+-+ +.+..+..+.+...| |++....|
T Consensus 137 ~P~------------T~~~~i~~i~~~~~~~vy~~s~~g 163 (242)
T cd04724 137 APT------------TPDERIKKIAELASGFIYYVSRTG 163 (242)
T ss_pred CCC------------CCHHHHHHHHhhCCCCEEEEeCCC
Confidence 642 234455545443444 55545444
No 86
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=61.17 E-value=20 Score=36.16 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeccC-CCccccch--HHHHHHHHHHHcCCcEEEE
Q 005715 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGW-NPQKYAWS--GYRELFNIIREFNLKVQVV 326 (681)
Q Consensus 270 ~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~-~p~~YdWs--gY~~l~~mvr~~GLKvqvV 326 (681)
-.++..|+.++++|+++|++.+. +.. .....+|+ .-+++.++++++||+|..+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~ 71 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD----ESDERLARLDWSKEERLSLVKAIYETGVRIPSM 71 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC----CcccccccccCCHHHHHHHHHHHHHcCCCceEE
Confidence 46889999999999999999532 211 12234565 3678999999999999544
No 87
>PLN02808 alpha-galactosidase
Probab=61.16 E-value=15 Score=41.04 Aligned_cols=59 Identities=19% Similarity=0.296 Sum_probs=46.5
Q ss_pred cCHHHHHHHHHH-----HHHcCcceEEEeeeeeeeccCCCccccc------hHHHHHHHHHHHcCCcEEE
Q 005715 267 VDPELIRQEISH-----MKALNVDGVIVNCWWGIVEGWNPQKYAW------SGYRELFNIIREFNLKVQV 325 (681)
Q Consensus 267 ~~~~~l~~~L~~-----LK~aGVdGV~vDVWWGiVE~~~p~~YdW------sgY~~l~~mvr~~GLKvqv 325 (681)
.+++.+.+...+ ||.+|.+.|.||.=|-..++.+.|..-. +|.+.|++.|++.|||.=.
T Consensus 46 i~e~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~lad~iH~~GlkfGi 115 (386)
T PLN02808 46 INETLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKASTFPSGIKALADYVHSKGLKLGI 115 (386)
T ss_pred CCHHHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHHHHHHHHHCCCceEE
Confidence 477888888887 6999999999998886665544453222 6899999999999999843
No 88
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=59.67 E-value=37 Score=35.96 Aligned_cols=66 Identities=20% Similarity=0.228 Sum_probs=49.2
Q ss_pred ecCCccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcc---ccchHHHHHHHHHHHcCCcEEEEEEee
Q 005715 260 INNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQK---YAWSGYRELFNIIREFNLKVQVVMAFH 330 (681)
Q Consensus 260 V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~---YdWsgY~~l~~mvr~~GLKvqvVmSFH 330 (681)
|.-=|.+.+.+++..--++||++|+..+.+..|= =+.+|.. +-..+|+.+.+.+++.||.+ +-.+|
T Consensus 31 iaGPCsie~~~~~~~~A~~lk~~g~~~~r~~~~k---pRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~--~te~~ 99 (266)
T PRK13398 31 IAGPCAVESEEQMVKVAEKLKELGVHMLRGGAFK---PRTSPYSFQGLGEEGLKILKEVGDKYNLPV--VTEVM 99 (266)
T ss_pred EEeCCcCCCHHHHHHHHHHHHHcCCCEEEEeeec---CCCCCCccCCcHHHHHHHHHHHHHHcCCCE--EEeeC
Confidence 3333667899999999999999999988888763 1111211 22678999999999999998 55664
No 89
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=58.68 E-value=11 Score=40.63 Aligned_cols=55 Identities=11% Similarity=0.142 Sum_probs=37.7
Q ss_pred HHHHHHHc-CcceEEEeeeeee-----eccCCCccccchHHHHHHHHHHHcC-CcEEEEEEeeccC
Q 005715 275 EISHMKAL-NVDGVIVNCWWGI-----VEGWNPQKYAWSGYRELFNIIREFN-LKVQVVMAFHEYG 333 (681)
Q Consensus 275 ~L~~LK~a-GVdGV~vDVWWGi-----VE~~~p~~YdWsgY~~l~~mvr~~G-LKvqvVmSFHqCG 333 (681)
.+++..++ |+|+|.+--.|+- +.++-=.+|-|-+|+++++-+++.| .. ..+|.||
T Consensus 160 y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~p----iilH~cG 221 (321)
T cd03309 160 LYERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSAL----IVHHSCG 221 (321)
T ss_pred HHHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCc----eEEEeCC
Confidence 33333444 9999998666764 4433334455999999999999984 32 4558998
No 90
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=58.37 E-value=22 Score=35.70 Aligned_cols=42 Identities=17% Similarity=0.262 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEE
Q 005715 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (681)
Q Consensus 271 ~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvq 324 (681)
.++..|+.++++|++||++. + | ++. ...++.++++++||+|.
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~--~-------~--~~~-~~~~l~~~l~~~gl~v~ 56 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYL--F-------P--YDW-DAEALKARLAAAGLEQV 56 (254)
T ss_pred CHHHHHHHHHHcCCCEEEec--C-------C--ccC-CHHHHHHHHHHcCCeEE
Confidence 58889999999999999883 2 1 122 25778889999999983
No 91
>PRK12313 glycogen branching enzyme; Provisional
Probab=58.17 E-value=23 Score=41.25 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=41.0
Q ss_pred ccCHHHHHHHH-HHHHHcCcceEEE-eeeeeeeccCCCccccc-----------------hHHHHHHHHHHHcCCcEEEE
Q 005715 266 LVDPELIRQEI-SHMKALNVDGVIV-NCWWGIVEGWNPQKYAW-----------------SGYRELFNIIREFNLKVQVV 326 (681)
Q Consensus 266 l~~~~~l~~~L-~~LK~aGVdGV~v-DVWWGiVE~~~p~~YdW-----------------sgY~~l~~mvr~~GLKvqvV 326 (681)
.-+-+.+...| ..||++||+.|.+ +|+ | .|...+| ..+++|++.|++.||||..=
T Consensus 166 ~g~~~~~~~~ll~yl~~LGv~~i~L~Pi~----~--~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD 239 (633)
T PRK12313 166 PLSYRELADELIPYVKEMGYTHVEFMPLM----E--HPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILD 239 (633)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEeCchh----c--CCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34557778775 9999999999985 332 2 1322333 34899999999999999444
Q ss_pred EEe
Q 005715 327 MAF 329 (681)
Q Consensus 327 mSF 329 (681)
+-+
T Consensus 240 ~V~ 242 (633)
T PRK12313 240 WVP 242 (633)
T ss_pred ECC
Confidence 444
No 92
>PRK09989 hypothetical protein; Provisional
Probab=57.64 E-value=25 Score=35.59 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEE
Q 005715 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (681)
Q Consensus 271 ~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvq 324 (681)
-+...|++++++|+++|++.. +..++ -+++.++++++||++.
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~---------~~~~~---~~~~~~~l~~~Gl~v~ 57 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLF---------PYDYS---TLQIQKQLEQNHLTLA 57 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECC---------cccCC---HHHHHHHHHHcCCcEE
Confidence 578899999999999999942 22234 3578888999999983
No 93
>PRK08508 biotin synthase; Provisional
Probab=57.63 E-value=59 Score=34.11 Aligned_cols=53 Identities=17% Similarity=0.019 Sum_probs=38.8
Q ss_pred cCHHHHHHHHHHHHHcCcceEEE-eeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEE
Q 005715 267 VDPELIRQEISHMKALNVDGVIV-NCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (681)
Q Consensus 267 ~~~~~l~~~L~~LK~aGVdGV~v-DVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqv 325 (681)
.+++.+.+..+.+++.|+..+.+ +-+= +....++.+|.++++.+++.++++.+
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~------~~~~~~~e~~~ei~~~ik~~~p~l~i 93 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGR------GLDDKKLEYVAEAAKAVKKEVPGLHL 93 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccC------CCCcccHHHHHHHHHHHHhhCCCcEE
Confidence 35678888888899999988865 2111 12234889999999999998876643
No 94
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=56.16 E-value=32 Score=39.51 Aligned_cols=66 Identities=21% Similarity=0.313 Sum_probs=48.8
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc-------------cchHHHHHHHHHHHcCCcEEEEEEeecc
Q 005715 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY-------------AWSGYRELFNIIREFNLKVQVVMAFHEY 332 (681)
Q Consensus 266 l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Y-------------dWsgY~~l~~mvr~~GLKvqvVmSFHqC 332 (681)
.-+-+++...|..||++||++|-+.--.-.-+ ....| ....+++|++.|++.||||..=+-+.-|
T Consensus 23 ~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~--~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~ 100 (543)
T TIGR02403 23 TGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQ--KDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHT 100 (543)
T ss_pred ccCHHHHHHhHHHHHHcCCCEEEECCcccCCC--CCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECcccc
Confidence 45678999999999999999997754432211 11234 3457899999999999999777777656
Q ss_pred C
Q 005715 333 G 333 (681)
Q Consensus 333 G 333 (681)
+
T Consensus 101 ~ 101 (543)
T TIGR02403 101 S 101 (543)
T ss_pred c
Confidence 5
No 95
>PLN02389 biotin synthase
Probab=55.60 E-value=23 Score=39.22 Aligned_cols=45 Identities=11% Similarity=0.225 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCC-------ccccchHHHHHHHHHHHcCCcE
Q 005715 273 RQEISHMKALNVDGVIVNCWWGIVEGWNP-------QKYAWSGYRELFNIIREFNLKV 323 (681)
Q Consensus 273 ~~~L~~LK~aGVdGV~vDVWWGiVE~~~p-------~~YdWsgY~~l~~mvr~~GLKv 323 (681)
+.+|++||++|+|.+.+ .+|. .+ ..-+|..+.+.++.+++.|+++
T Consensus 178 ~E~l~~LkeAGld~~~~-----~LeT-s~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNH-----NLDT-SREYYPNVITTRSYDDRLETLEAVREAGISV 229 (379)
T ss_pred HHHHHHHHHcCCCEEEe-----eecC-ChHHhCCcCCCCCHHHHHHHHHHHHHcCCeE
Confidence 56789999999999988 4563 22 1238999999999999999988
No 96
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=55.52 E-value=78 Score=32.39 Aligned_cols=46 Identities=9% Similarity=0.239 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCcceEEE-eeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEee
Q 005715 272 IRQEISHMKALNVDGVIV-NCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (681)
Q Consensus 272 l~~~L~~LK~aGVdGV~v-DVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFH 330 (681)
....+..++++||..|.+ .+.. ..++.+.+++++++.+|.+.+.+|
T Consensus 16 ~~~~~~~~~~~g~~~~i~~~~~~-------------~~~~~~~~~~~~~~~~v~~~~GiH 62 (255)
T PF01026_consen 16 RPEVLERAREAGVSAIIIVSTDP-------------EDWERVLELASQYPDRVYPALGIH 62 (255)
T ss_dssp HHHHHHHHHHTTEEEEEEEESSH-------------HHHHHHHHHHHHTTTEEEEEE---
T ss_pred HHHHHHHHHHcCCCEEEEcCCCH-------------HHhHHHHHHHhcCCCeEEEEecCC
Confidence 677889999999998842 2222 455588899999999999999999
No 97
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=54.34 E-value=30 Score=38.79 Aligned_cols=67 Identities=9% Similarity=0.044 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc---c-------------------chHHHHHHHHHHHcCCcEEE
Q 005715 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---A-------------------WSGYRELFNIIREFNLKVQV 325 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Y---d-------------------WsgY~~l~~mvr~~GLKvqv 325 (681)
.++.|...|..||.+||++|-+.-.+--........| | ..-+++|++.|++.|+||.+
T Consensus 20 ~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~ 99 (479)
T PRK09441 20 LWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYA 99 (479)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEE
Confidence 4678999999999999999987654322211011222 2 23488999999999999988
Q ss_pred EEEeeccCC
Q 005715 326 VMAFHEYGA 334 (681)
Q Consensus 326 VmSFHqCGG 334 (681)
=+-|--|++
T Consensus 100 D~V~NH~~~ 108 (479)
T PRK09441 100 DVVLNHKAG 108 (479)
T ss_pred EECcccccC
Confidence 888866764
No 98
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=54.30 E-value=21 Score=37.75 Aligned_cols=75 Identities=9% Similarity=0.136 Sum_probs=48.4
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCcccc---chHHHHHHHHHHHc--CCcEEEEEEeeccCCCCCCCccccCChhH
Q 005715 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREF--NLKVQVVMAFHEYGANDSGDAWISLPQWV 348 (681)
Q Consensus 274 ~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~--GLKvqvVmSFHqCGGNVGD~~~IpLP~WV 348 (681)
.-++++.++|+|+|.+.-=|+-+ -+|.+|+ |-+++++++-+++. |.++ .|-|||+. ++-.++
T Consensus 181 ~~~~~~ieaGad~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~~i-----lh~cg~~~------~~~~~~ 247 (335)
T cd00717 181 EYLKAQIEAGAQAVQIFDSWAGA--LSPEDFEEFVLPYLKRIIEEVKKRLPGVPV-----ILFAKGAG------GLLEDL 247 (335)
T ss_pred HHHHHHHHhCCCEEEEeCccccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCCE-----EEEcCCCH------HHHHHH
Confidence 34455567999999754325533 3577777 99999999999998 4433 55677431 455566
Q ss_pred HhhhccCCCeEeecCC
Q 005715 349 MEIGKGNQDIFFTDRE 364 (681)
Q Consensus 349 ~e~g~~~PDI~ytDr~ 364 (681)
.+. ..|++-.|..
T Consensus 248 ~~~---~~~~~s~d~~ 260 (335)
T cd00717 248 AQL---GADVVGLDWR 260 (335)
T ss_pred Hhc---CCCEEEeCCC
Confidence 533 3567666654
No 99
>PRK04302 triosephosphate isomerase; Provisional
Probab=54.26 E-value=29 Score=35.04 Aligned_cols=47 Identities=11% Similarity=0.217 Sum_probs=36.2
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEee
Q 005715 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (681)
Q Consensus 274 ~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFH 330 (681)
..++.||++|+++|.++- +++...+.--.++++.+++.||.+ |++.|
T Consensus 76 ~~~~~l~~~G~~~vii~~--------ser~~~~~e~~~~v~~a~~~Gl~~--I~~v~ 122 (223)
T PRK04302 76 ILPEAVKDAGAVGTLINH--------SERRLTLADIEAVVERAKKLGLES--VVCVN 122 (223)
T ss_pred hHHHHHHHcCCCEEEEec--------cccccCHHHHHHHHHHHHHCCCeE--EEEcC
Confidence 458999999999998863 334445556788999999999988 66664
No 100
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=54.23 E-value=44 Score=36.88 Aligned_cols=72 Identities=14% Similarity=0.190 Sum_probs=53.4
Q ss_pred cEEEEeeceeecCCccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEe
Q 005715 250 PVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (681)
Q Consensus 250 pVyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSF 329 (681)
|+++-.| |.+.+.+.+...-+.||++||..+.-..|==..-+.+-+-..+.+|+.|.+.+++.||.+ +-+.
T Consensus 119 ~~~iaGp-------c~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~--~t~v 189 (360)
T PRK12595 119 QSFIFGP-------CSVESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAV--ISEI 189 (360)
T ss_pred eeeEEec-------ccccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCE--EEee
Confidence 4555566 667889999999999999999999876663222222234456789999999999999998 4454
Q ss_pred e
Q 005715 330 H 330 (681)
Q Consensus 330 H 330 (681)
|
T Consensus 190 ~ 190 (360)
T PRK12595 190 V 190 (360)
T ss_pred C
Confidence 4
No 101
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=53.13 E-value=20 Score=37.63 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=59.6
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCc---cccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhHHh
Q 005715 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQ---KYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVME 350 (681)
Q Consensus 274 ~~L~~LK~aGVdGV~vDVWWGiVE~~~p~---~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpLP~WV~e 350 (681)
.-++++.++|+|+|.+.-=++.+ -+|. +|-+-+++++++.+++.|.+ ..-+|-||- .-++=.++.
T Consensus 186 ~~~~~~~~~G~d~i~~~d~~~~~--isp~~f~e~~~P~~k~i~~~i~~~g~~---~~~lH~cG~------~~~~~~~l~- 253 (343)
T PF01208_consen 186 EYAKAQIEAGADGIFIFDSSGSL--ISPEMFEEFILPYLKKIIDAIKEAGKD---PVILHICGN------TTPILDDLA- 253 (343)
T ss_dssp HHHHHHHHTT-SEEEEEETTGGG--S-HHHHHHHTHHHHHHHHHHHHHHETE----EEEEETTH------G-GGHHHHH-
T ss_pred HHHHHHHHhCCCcccccccccCC--CCHHHHHHHHHHHHHHHHHHHHHhCCC---ceEEEECCc------hHHHHHHHH-
Confidence 34566779999999665533322 2344 67899999999999999993 335788982 212333333
Q ss_pred hhccCCCeEeecCCCCccc------ccee-c-ccCcccccCCCchhHHHHHHHHHHH
Q 005715 351 IGKGNQDIFFTDREGRRNT------ECLS-W-GVDKERVLNGRTGIEVYFDFMRSFR 399 (681)
Q Consensus 351 ~g~~~PDI~ytDr~G~rn~------E~LS-l-g~D~~pVl~GRTpiq~Y~DFmrSFr 399 (681)
+...|++-.|..=.-.+ .-+. + ++|..-+|. -|+-+++.+--+-+.
T Consensus 254 --~~g~d~~~~~~~~~~~~~~~~~~~~~~l~Gni~~~~~l~-gt~eei~~~v~~~i~ 307 (343)
T PF01208_consen 254 --DLGADVLSVDEKVDLAEAKRKLGDKIVLMGNIDPVSLLF-GTPEEIEEEVKRLIE 307 (343)
T ss_dssp --TSS-SEEEE-TTS-HHHHHHHHTTSSEEEEEB-G-GGGG-S-HHHHHHHHHHHHH
T ss_pred --hcCCCEEEEcCCCCHHHHHHHhCCCeEEECCCCcccccc-CCHHHHHHHHHHHHH
Confidence 34456655553321101 1112 2 355544566 677777764444444
No 102
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=52.55 E-value=1.2e+02 Score=34.57 Aligned_cols=51 Identities=8% Similarity=0.074 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEe
Q 005715 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (681)
Q Consensus 269 ~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSF 329 (681)
.+.++..+++..+.||+.|.+-+--..++ -.++.+++++++|+++++.+|+
T Consensus 95 ddvv~~~v~~A~~~Gvd~irif~~lnd~~----------n~~~~v~~ak~~G~~v~~~i~~ 145 (448)
T PRK12331 95 DDVVESFVQKSVENGIDIIRIFDALNDVR----------NLETAVKATKKAGGHAQVAISY 145 (448)
T ss_pred hhhHHHHHHHHHHCCCCEEEEEEecCcHH----------HHHHHHHHHHHcCCeEEEEEEe
Confidence 35678889999999999988776543332 3788999999999999988887
No 103
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=52.55 E-value=11 Score=38.22 Aligned_cols=53 Identities=17% Similarity=0.177 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEE
Q 005715 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (681)
Q Consensus 273 ~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvV 326 (681)
..+.+...++|+|+|.+=++|+.+.+ +...+...--.++.+.|+++|||+.+-
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~-~~~~~~~~~i~~v~~~~~~~gl~vIlE 131 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGS-GNEDEVIEEIAAVVEECHKYGLKVILE 131 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHT-THHHHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred HHHHHHHHHcCCceeeeecccccccc-ccHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 67888899999999999999999886 556777777888888899899998444
No 104
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=51.95 E-value=42 Score=38.35 Aligned_cols=65 Identities=11% Similarity=0.188 Sum_probs=48.3
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCC-Ccccc-------------chHHHHHHHHHHHcCCcEEEEEEeec
Q 005715 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWN-PQKYA-------------WSGYRELFNIIREFNLKVQVVMAFHE 331 (681)
Q Consensus 266 l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~-p~~Yd-------------WsgY~~l~~mvr~~GLKvqvVmSFHq 331 (681)
.-|-+.|.+.|..||++||++|-+-=. .|..+ ...|+ ...+++|++.|++.|+||..=+-|.-
T Consensus 24 ~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi---~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH 100 (539)
T TIGR02456 24 IGDFPGLTSKLDYLKWLGVDALWLLPF---FQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNH 100 (539)
T ss_pred ccCHHHHHHhHHHHHHCCCCEEEECCC---cCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 457799999999999999999976543 23211 22332 46789999999999999977777765
Q ss_pred cC
Q 005715 332 YG 333 (681)
Q Consensus 332 CG 333 (681)
++
T Consensus 101 ~s 102 (539)
T TIGR02456 101 TS 102 (539)
T ss_pred CC
Confidence 54
No 105
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=51.29 E-value=26 Score=37.17 Aligned_cols=75 Identities=12% Similarity=0.120 Sum_probs=47.1
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCcccc---chHHHHHHHHHHHc--CCcEEEEEEeeccCCCCCCCccccCChhH
Q 005715 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREF--NLKVQVVMAFHEYGANDSGDAWISLPQWV 348 (681)
Q Consensus 274 ~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~--GLKvqvVmSFHqCGGNVGD~~~IpLP~WV 348 (681)
.-++++.++|+|+|.+.-=|+-+ =+|.+|+ |-+++++++-+++. +.. | .|-|||. -++-.|+
T Consensus 184 ~~~~~~~eaGad~i~i~d~~~~~--lsp~~f~ef~~p~~k~i~~~i~~~~~~~~---i--lh~cg~~------~~~~~~~ 250 (338)
T TIGR01464 184 EYLVEQVKAGAQAVQIFDSWAGA--LSPEDFEEFVLPYLKKIIEEVKARLPNVP---V--ILFAKGA------GHLLEEL 250 (338)
T ss_pred HHHHHHHHcCCCEEEEECCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCC---E--EEEeCCc------HHHHHHH
Confidence 34455667999998754325533 4567776 99999999999987 432 3 4557743 1344455
Q ss_pred HhhhccCCCeEeecCC
Q 005715 349 MEIGKGNQDIFFTDRE 364 (681)
Q Consensus 349 ~e~g~~~PDI~ytDr~ 364 (681)
.+ ...|++-.|..
T Consensus 251 ~~---~~~~~~s~d~~ 263 (338)
T TIGR01464 251 AE---TGADVVGLDWT 263 (338)
T ss_pred Hh---cCCCEEEeCCC
Confidence 43 34477766654
No 106
>PRK13575 3-dehydroquinate dehydratase; Provisional
Probab=50.78 E-value=1.1e+02 Score=31.79 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=33.2
Q ss_pred HHHHHHHHHHH-HcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEee
Q 005715 270 ELIRQEISHMK-ALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (681)
Q Consensus 270 ~~l~~~L~~LK-~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFH 330 (681)
+...+-|+.+- ..+||.|-|..... .+-...+++++.+++.|.|| |+|+|
T Consensus 83 ~~~~~ll~~~~~~~~~d~vDiE~~~~---------~~~~~~~~l~~~~~~~~~~v--I~S~H 133 (238)
T PRK13575 83 DLYLNLLSDLANINGIDMIDIEWQAD---------IDIEKHQRLITHLQQYNKEV--VISHH 133 (238)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcccC---------CChHHHHHHHHHHHHcCCEE--EEecC
Confidence 33333354444 45689988876431 12335788888999998877 99999
No 107
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=50.74 E-value=1.1e+02 Score=31.61 Aligned_cols=91 Identities=20% Similarity=0.221 Sum_probs=57.8
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhHHhhhc
Q 005715 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGK 353 (681)
Q Consensus 274 ~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpLP~WV~e~g~ 353 (681)
.+++..++.|++.|.+-+-... ..-..++++.+++.|+++++.++- + ..+ -|..+.+..+
T Consensus 89 ~~i~~a~~~g~~~iri~~~~s~----------~~~~~~~i~~ak~~G~~v~~~~~~--~-------~~~-~~~~~~~~~~ 148 (263)
T cd07943 89 DDLKMAADLGVDVVRVATHCTE----------ADVSEQHIGAARKLGMDVVGFLMM--S-------HMA-SPEELAEQAK 148 (263)
T ss_pred HHHHHHHHcCCCEEEEEechhh----------HHHHHHHHHHHHHCCCeEEEEEEe--c-------cCC-CHHHHHHHHH
Confidence 6678888999999988664442 235788999999999999777742 1 112 3566665432
Q ss_pred ----cCCC-eEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHH
Q 005715 354 ----GNQD-IFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFD 403 (681)
Q Consensus 354 ----~~PD-I~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~ 403 (681)
..+| |.+.|-.|.- ||.+++ ++++.+++++.
T Consensus 149 ~~~~~G~d~i~l~DT~G~~------------------~P~~v~-~lv~~l~~~~~ 184 (263)
T cd07943 149 LMESYGADCVYVTDSAGAM------------------LPDDVR-ERVRALREALD 184 (263)
T ss_pred HHHHcCCCEEEEcCCCCCc------------------CHHHHH-HHHHHHHHhCC
Confidence 2344 5556665532 555544 56666665543
No 108
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=50.66 E-value=31 Score=34.96 Aligned_cols=41 Identities=15% Similarity=0.083 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcE
Q 005715 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (681)
Q Consensus 271 ~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKv 323 (681)
.++..|++++++|++||++. + +.. ...+++.++++++||++
T Consensus 16 ~l~~~l~~~a~~Gf~~VEl~---~------~~~---~~~~~~~~~l~~~gl~~ 56 (258)
T PRK09997 16 DFLARFEKAAQCGFRGVEFM---F------PYD---YDIEELKQVLASNKLEH 56 (258)
T ss_pred CHHHHHHHHHHhCCCEEEEc---C------CCC---CCHHHHHHHHHHcCCcE
Confidence 48888999999999999992 2 111 24788888999999998
No 109
>PLN02692 alpha-galactosidase
Probab=50.60 E-value=28 Score=39.40 Aligned_cols=57 Identities=18% Similarity=0.295 Sum_probs=42.2
Q ss_pred cCHHHHHHHHHH-----HHHcCcceEEEeeeeeeeccCCCccccc------hHHHHHHHHHHHcCCcE
Q 005715 267 VDPELIRQEISH-----MKALNVDGVIVNCWWGIVEGWNPQKYAW------SGYRELFNIIREFNLKV 323 (681)
Q Consensus 267 ~~~~~l~~~L~~-----LK~aGVdGV~vDVWWGiVE~~~p~~YdW------sgY~~l~~mvr~~GLKv 323 (681)
.+++.+.+...+ ||++|.+.|.||.=|-..++..-|..-. +|.+.|++.|++.|||+
T Consensus 70 i~E~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~k~ladyiH~~GLKf 137 (412)
T PLN02692 70 IDEKMIKETADALVSTGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKSTFPSGIKALADYVHSKGLKL 137 (412)
T ss_pred cCHHHHHHHHHHHHhccchhcCcEEEEEcCCcCCCCCCCCCCeeeChhhcCCcHHHHHHHHHHCCCce
Confidence 367777776665 4888999999988664434433343333 68999999999999998
No 110
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=50.07 E-value=31 Score=43.37 Aligned_cols=62 Identities=15% Similarity=0.281 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHcCcceEEEe-ee-eeeec-cC----------CCccccch-------------------------HH
Q 005715 268 DPELIRQEISHMKALNVDGVIVN-CW-WGIVE-GW----------NPQKYAWS-------------------------GY 309 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~vD-VW-WGiVE-~~----------~p~~YdWs-------------------------gY 309 (681)
+-.+|...|..||++||+.|.+- |+ .+.|. .. +...|+|- .+
T Consensus 478 tf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~Ef 557 (1111)
T TIGR02102 478 TFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEF 557 (1111)
T ss_pred CHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHHH
Confidence 44788889999999999999753 33 22221 00 12235454 48
Q ss_pred HHHHHHHHHcCCcEEEEEEe
Q 005715 310 RELFNIIREFNLKVQVVMAF 329 (681)
Q Consensus 310 ~~l~~mvr~~GLKvqvVmSF 329 (681)
++|++-+++.||+|..=+-|
T Consensus 558 K~LV~alH~~GI~VILDVVy 577 (1111)
T TIGR02102 558 KNLINEIHKRGMGVILDVVY 577 (1111)
T ss_pred HHHHHHHHHCCCEEEEeccc
Confidence 89999999999999554445
No 111
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=49.44 E-value=16 Score=27.28 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=13.6
Q ss_pred HHHHHHHHHcCcceEEEe
Q 005715 273 RQEISHMKALNVDGVIVN 290 (681)
Q Consensus 273 ~~~L~~LK~aGVdGV~vD 290 (681)
.+..+.|-.+||||||.|
T Consensus 10 ~~~~~~~l~~GVDgI~Td 27 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMTD 27 (30)
T ss_dssp HHHHHHHHHHT-SEEEES
T ss_pred HHHHHHHHHcCCCEeeCC
Confidence 345578888999999987
No 112
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=48.45 E-value=49 Score=38.23 Aligned_cols=65 Identities=15% Similarity=0.271 Sum_probs=46.4
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeecc-CCCcccc-------------chHHHHHHHHHHHcCCcEEEEEEeec
Q 005715 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEG-WNPQKYA-------------WSGYRELFNIIREFNLKVQVVMAFHE 331 (681)
Q Consensus 266 l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~-~~p~~Yd-------------WsgY~~l~~mvr~~GLKvqvVmSFHq 331 (681)
.-|.+++.+.|..||++||++|-+-=.+ +. .....|+ ...+++|++.+++.|+||..=+-+--
T Consensus 29 ~Gdl~gi~~~ldyl~~lGv~~i~l~P~~---~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH 105 (551)
T PRK10933 29 TGDLRGVTQRLDYLQKLGVDAIWLTPFY---VSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNH 105 (551)
T ss_pred CcCHHHHHHhhHHHHhCCCCEEEECCCC---CCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 4577999999999999999999764433 11 0112232 34689999999999999966666644
Q ss_pred cC
Q 005715 332 YG 333 (681)
Q Consensus 332 CG 333 (681)
|+
T Consensus 106 ~s 107 (551)
T PRK10933 106 TS 107 (551)
T ss_pred cc
Confidence 43
No 113
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=48.44 E-value=1e+02 Score=32.32 Aligned_cols=89 Identities=18% Similarity=0.262 Sum_probs=57.5
Q ss_pred CccEEEEeeceeecCCccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEE
Q 005715 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (681)
Q Consensus 248 ~vpVyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVm 327 (681)
.+|+..|+=.+.|- .-.+++-++.++++||+||.+.- |+ +..-.++++.++++||+...++
T Consensus 87 ~~plv~m~Y~Npi~-------~~G~e~f~~~~~~aGvdgviipD-----lp-------~ee~~~~~~~~~~~gl~~i~lv 147 (256)
T TIGR00262 87 NIPIGLLTYYNLIF-------RKGVEEFYAKCKEVGVDGVLVAD-----LP-------LEESGDLVEAAKKHGVKPIFLV 147 (256)
T ss_pred CCCEEEEEeccHHh-------hhhHHHHHHHHHHcCCCEEEECC-----CC-------hHHHHHHHHHHHHCCCcEEEEE
Confidence 46766766554332 24778889999999999999873 22 2456789999999999995555
Q ss_pred EeeccCCCCCCCccccCChhHHhhhccCCC-eEeecCCCCc
Q 005715 328 AFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREGRR 367 (681)
Q Consensus 328 SFHqCGGNVGD~~~IpLP~WV~e~g~~~PD-I~ytDr~G~r 367 (681)
+-+ +.+.-+..+.+.-.+ |++....|..
T Consensus 148 ~P~------------T~~eri~~i~~~~~gfiy~vs~~G~T 176 (256)
T TIGR00262 148 APN------------ADDERLKQIAEKSQGFVYLVSRAGVT 176 (256)
T ss_pred CCC------------CCHHHHHHHHHhCCCCEEEEECCCCC
Confidence 542 233455555444433 5554555543
No 114
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=48.39 E-value=53 Score=34.13 Aligned_cols=64 Identities=19% Similarity=0.261 Sum_probs=47.1
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccC-CC--ccccchHHHHHHHHHHHcCCcEEEEEEeeccC
Q 005715 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGW-NP--QKYAWSGYRELFNIIREFNLKVQVVMAFHEYG 333 (681)
Q Consensus 266 l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~-~p--~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCG 333 (681)
+.+++.+++.++.+++.|++.|-+-.=++..-+. .+ ..++-..++++++++++.|+++ ..|.++
T Consensus 116 ~~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v----~~H~~~ 182 (342)
T cd01299 116 VDGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYV----AAHAYG 182 (342)
T ss_pred ecCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEE----EEEeCC
Confidence 4678999999999999999999776533321111 11 2577788999999999999876 567553
No 115
>PRK07360 FO synthase subunit 2; Reviewed
Probab=48.24 E-value=17 Score=39.57 Aligned_cols=53 Identities=15% Similarity=0.263 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeec---------cCCCccccchHHHHHHHHHHHcCCcEEEEEEe
Q 005715 272 IRQEISHMKALNVDGVIVNCWWGIVE---------GWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (681)
Q Consensus 272 l~~~L~~LK~aGVdGV~vDVWWGiVE---------~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSF 329 (681)
.+..|++||++|++.+. +.-. .-.|++-.+..|.+.++++++.||++-.-|=|
T Consensus 162 ~~e~l~~LkeAGld~~~-----~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~ 223 (371)
T PRK07360 162 YEEVLKALKDAGLDSMP-----GTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMY 223 (371)
T ss_pred HHHHHHHHHHcCCCcCC-----CcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEe
Confidence 36789999999999994 2111 11477788888899999999999999443333
No 116
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=47.76 E-value=76 Score=34.74 Aligned_cols=85 Identities=13% Similarity=0.073 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCcceEEEee--eeeeecc--CCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChh
Q 005715 272 IRQEISHMKALNVDGVIVNC--WWGIVEG--WNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQW 347 (681)
Q Consensus 272 l~~~L~~LK~aGVdGV~vDV--WWGiVE~--~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpLP~W 347 (681)
...++++++++|++.|.+-+ +...++. .......|.-..+.++.+++.|+++++.+. |. .-.-|..
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e---------da-~r~~~~~ 142 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE---------DA-TRTDIDF 142 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe---------ec-CCCCHHH
Confidence 35678889999999887743 3322332 113344677788999999999999865442 12 2234677
Q ss_pred HHhhh----ccCCC-eEeecCCCC
Q 005715 348 VMEIG----KGNQD-IFFTDREGR 366 (681)
Q Consensus 348 V~e~g----~~~PD-I~ytDr~G~ 366 (681)
+.+.. +.-+| |.+.|-.|.
T Consensus 143 l~~~~~~~~~~g~~~i~l~DT~G~ 166 (363)
T TIGR02090 143 LIKVFKRAEEAGADRINIADTVGV 166 (363)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCc
Confidence 76642 22233 666666663
No 117
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=47.57 E-value=31 Score=36.91 Aligned_cols=76 Identities=11% Similarity=0.088 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---chHHHHHHHHHHHcC--CcEEEEEEeeccCCCCCCCccccCChh
Q 005715 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFN--LKVQVVMAFHEYGANDSGDAWISLPQW 347 (681)
Q Consensus 273 ~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~G--LKvqvVmSFHqCGGNVGD~~~IpLP~W 347 (681)
..-++++.++|+++|.+.-=|+-+ -+|.+|+ +-+.+++++-+++.| .+ || |-|||.. ++-.|
T Consensus 189 ~~~~~~~~eaGad~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~~---il--h~cg~~~------~~~~~ 255 (346)
T PRK00115 189 IAYLNAQIEAGAQAVQIFDSWAGA--LSPADYREFVLPYMKRIVAELKREHPDVP---VI--LFGKGAG------ELLEA 255 (346)
T ss_pred HHHHHHHHHcCCCEEEEecCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCCC---EE--EEcCCcH------HHHHH
Confidence 445556677999999754335543 3577777 999999999999984 33 33 6688432 22334
Q ss_pred HHhhhccCCCeEeecCC
Q 005715 348 VMEIGKGNQDIFFTDRE 364 (681)
Q Consensus 348 V~e~g~~~PDI~ytDr~ 364 (681)
+. +...|++-.|..
T Consensus 256 ~~---~~~~~~is~d~~ 269 (346)
T PRK00115 256 MA---ETGADVVGLDWT 269 (346)
T ss_pred HH---hcCCCEEeeCCC
Confidence 54 334466666653
No 118
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=47.10 E-value=1.9e+02 Score=31.12 Aligned_cols=86 Identities=21% Similarity=0.342 Sum_probs=56.4
Q ss_pred cccCHHHHHHHHHHHHHcC--cceEEEeeeeeeeccCCCccccch-----HHHHHHHHHHHcCCcEEEEEEeeccCCCCC
Q 005715 265 QLVDPELIRQEISHMKALN--VDGVIVNCWWGIVEGWNPQKYAWS-----GYRELFNIIREFNLKVQVVMAFHEYGANDS 337 (681)
Q Consensus 265 ~l~~~~~l~~~L~~LK~aG--VdGV~vDVWWGiVE~~~p~~YdWs-----gY~~l~~mvr~~GLKvqvVmSFHqCGGNVG 337 (681)
...+.+.+.+-++.+++.| +|+|.+|+=|.. .-+.|+|. .-+++++-+++.|+|+ ++..|
T Consensus 19 ~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~----~~~~f~~d~~~fPdp~~m~~~l~~~g~~~--~~~~~------- 85 (339)
T cd06604 19 SYYPEEEVREIADEFRERDIPCDAIYLDIDYMD----GYRVFTWDKERFPDPKELIKELHEQGFKV--VTIID------- 85 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECchhhC----CCCceeeccccCCCHHHHHHHHHHCCCEE--EEEEe-------
Confidence 3457788899999999876 588888866541 23335444 3579999999999999 44454
Q ss_pred CCccccC-C-hhHHhhhccCCCeEeecCCCC
Q 005715 338 GDAWISL-P-QWVMEIGKGNQDIFFTDREGR 366 (681)
Q Consensus 338 D~~~IpL-P-~WV~e~g~~~PDI~ytDr~G~ 366 (681)
+.|.. | .-+-+++.+ .+.|.++.+|.
T Consensus 86 --P~v~~~~~~~~~~e~~~-~g~~v~~~~g~ 113 (339)
T cd06604 86 --PGVKVDPGYDVYEEGLE-NDYFVKDPDGE 113 (339)
T ss_pred --CceeCCCCChHHHHHHH-CCeEEECCCCC
Confidence 22221 1 123334444 37899998884
No 119
>PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional
Probab=46.60 E-value=28 Score=41.82 Aligned_cols=82 Identities=18% Similarity=0.278 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeccCCCccccchHH----HHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccC
Q 005715 270 ELIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWSGY----RELFNIIREFNLKVQVVMAFHEYGANDSGDAWISL 344 (681)
Q Consensus 270 ~~l~~~L~~LK~aGVdGV~vDVW-WGiVE~~~p~~YdWsgY----~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpL 344 (681)
.+++..++.|..+|+..|-||.= | .|.-....-+|..| -+.|..+-+ |++-...+++|-|=||..+ | +
T Consensus 581 ~al~~Ev~~L~~aG~~~IQiDEPal--~e~~~~~~~~~~~~l~~~v~a~n~a~~-~~~~~~~i~tH~C~g~~~~---i-~ 653 (758)
T PRK05222 581 LAIRDEVLDLEAAGIKIIQIDEPAL--REGLPLRRSDWDAYLDWAVEAFRLATS-GVKDETQIHTHMCYSEFND---I-I 653 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEeeCchh--hhcCcccccCHHHHHHHHHHHHHHHHc-CCCCCCEEEEEEeccChHH---H-H
Confidence 47788889999999999999986 6 34333344567444 556666654 6654446799999988765 1 2
Q ss_pred ChhHHhhhccCCCeEeec
Q 005715 345 PQWVMEIGKGNQDIFFTD 362 (681)
Q Consensus 345 P~WV~e~g~~~PDI~ytD 362 (681)
|. +.+.+-|.++.+
T Consensus 654 ~~----i~~l~vD~~~lE 667 (758)
T PRK05222 654 DA----IAALDADVISIE 667 (758)
T ss_pred HH----HHhCCCCEEEEE
Confidence 22 235777877665
No 120
>PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Probab=46.51 E-value=51 Score=39.95 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeccCCCccccchHHHHHH----HHHHHcCCcEEEEEEeeccCCCCCCCccccC
Q 005715 270 ELIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWSGYRELF----NIIREFNLKVQVVMAFHEYGANDSGDAWISL 344 (681)
Q Consensus 270 ~~l~~~L~~LK~aGVdGV~vDVW-WGiVE~~~p~~YdWsgY~~l~----~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpL 344 (681)
.+++..++.|.++|+..|-||.= |. |...-..-+|..|.+.+ +++. .|++-..-+++|-|-||..+ | +
T Consensus 586 ~alr~Ev~~L~~aG~~~IQIDEPal~--e~~~~~~~~~~~~l~~av~af~~~~-~~v~~~~~I~~H~C~gnf~~---I-~ 658 (766)
T PLN02475 586 LAIKDEVEDLEKAGITVIQIDEAALR--EGLPLRKSEHAFYLDWAVHSFRITN-CGVQDTTQIHTHMCYSNFND---I-I 658 (766)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCcchh--hcCCcCccCHHHHHHHHHHHHHHHH-hcCCCCCEEEEEEecCCcHH---H-H
Confidence 46788889999999999999976 62 33222346777666554 4443 35543335778999999664 1 1
Q ss_pred ChhHHhhhccCCCeEeecC
Q 005715 345 PQWVMEIGKGNQDIFFTDR 363 (681)
Q Consensus 345 P~WV~e~g~~~PDI~ytDr 363 (681)
| .+.+.+-|.++.|-
T Consensus 659 ~----~i~~l~~D~~~~E~ 673 (766)
T PLN02475 659 H----SIIDMDADVITIEN 673 (766)
T ss_pred H----HHHhCCCCEEEEEc
Confidence 1 23467778766553
No 121
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=46.49 E-value=55 Score=35.11 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeecc----CCCccccchHHHHHHHHHHHcCCcEEEEEEeec
Q 005715 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEG----WNPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~----~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHq 331 (681)
+-+..++-..-..+.|++.|.||..|---+. .--..+.+....+|++.+++.|.+| +|..|.
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi--~lw~~~ 95 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGI--WLWYHS 95 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EE--EEEEEC
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCE--EEEEeC
Confidence 5577788888889999999999999975332 1124677899999999999999999 666664
No 122
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=45.98 E-value=58 Score=35.62 Aligned_cols=94 Identities=12% Similarity=0.168 Sum_probs=65.1
Q ss_pred eeecCCccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCC
Q 005715 258 HVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDS 337 (681)
Q Consensus 258 d~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVG 337 (681)
.+|...+.+...+.+++.++.|+..|.+.|--..=|...+.-+.- +=+=-.+|-++..+-..|+ |||.= | |
T Consensus 14 ~iIaPSs~~~~~~~~~~a~~~L~~~G~~v~~~~~i~~~~~~~a~s--~~~R~~dL~~af~d~~vk~--Il~~r--G---G 84 (313)
T COG1619 14 GIIAPSSGATATDALKRAIQRLENLGFEVVFGEHILRRDQYFAGS--DEERAEDLMSAFSDPDVKA--ILCVR--G---G 84 (313)
T ss_pred EEEecCcccchHHHHHHHHHHHHHcCCEEEechhhhhccccccCC--HHHHHHHHHHHhcCCCCeE--EEEcc--c---C
Confidence 344444445578999999999999998888776655444331111 1223456677777777777 99993 3 4
Q ss_pred CCccccCChhHHhhhccCCCeEe
Q 005715 338 GDAWISLPQWVMEIGKGNQDIFF 360 (681)
Q Consensus 338 D~~~IpLP~WV~e~g~~~PDI~y 360 (681)
..++==||.|-.+..+++|-||+
T Consensus 85 ygs~rlLp~ld~~~i~~~pKifi 107 (313)
T COG1619 85 YGSNRLLPYLDYDLIRNHPKIFI 107 (313)
T ss_pred CChhhhhhhcchHHHhcCCceEE
Confidence 55665599999988899998875
No 123
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=45.72 E-value=32 Score=38.04 Aligned_cols=58 Identities=14% Similarity=0.245 Sum_probs=44.8
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCC---Cccc----cchHHHHHHHHHHHcCCcEEEEEEeeccC
Q 005715 273 RQEISHMKALNVDGVIVNCWWGIVEGWN---PQKY----AWSGYRELFNIIREFNLKVQVVMAFHEYG 333 (681)
Q Consensus 273 ~~~L~~LK~aGVdGV~vDVWWGiVE~~~---p~~Y----dWsgY~~l~~mvr~~GLKvqvVmSFHqCG 333 (681)
+..+..+|++|++.|++++=|-.++.-. |.-. .| ..+++++-+++.||+| +|..|.-.
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~-~ld~~I~~a~~~gi~V--~iD~H~~~ 140 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLK-ILDEAINWAKKLGIYV--LIDLHGYP 140 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHH-HHHHHHHHHHhcCeeE--EEEecccC
Confidence 8899999999999999998743335421 2222 34 7888999999999999 99999644
No 124
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=45.68 E-value=68 Score=32.94 Aligned_cols=64 Identities=16% Similarity=0.211 Sum_probs=41.8
Q ss_pred CccEEEEeeceeecCCccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEE
Q 005715 248 YIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (681)
Q Consensus 248 ~vpVyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVm 327 (681)
.+|+.+|.=+..+ +. ..++-++.++++|+++|.+... .+|. .....++++.++++||+. ++
T Consensus 74 ~~Pl~lM~y~n~~-----~~---~~~~~i~~~~~~Gadgvii~dl--p~e~-------~~~~~~~~~~~~~~Gl~~--~~ 134 (244)
T PRK13125 74 SVPIILMTYLEDY-----VD---SLDNFLNMARDVGADGVLFPDL--LIDY-------PDDLEKYVEIIKNKGLKP--VF 134 (244)
T ss_pred CCCEEEEEecchh-----hh---CHHHHHHHHHHcCCCEEEECCC--CCCc-------HHHHHHHHHHHHHcCCCE--EE
Confidence 4677666544321 12 3445578889999999999421 0121 234678999999999999 55
Q ss_pred Eee
Q 005715 328 AFH 330 (681)
Q Consensus 328 SFH 330 (681)
.+|
T Consensus 135 ~v~ 137 (244)
T PRK13125 135 FTS 137 (244)
T ss_pred EEC
Confidence 554
No 125
>PLN00196 alpha-amylase; Provisional
Probab=45.25 E-value=66 Score=36.28 Aligned_cols=64 Identities=11% Similarity=0.096 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc------c--------hHHHHHHHHHHHcCCcEEEEEEeeccC
Q 005715 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA------W--------SGYRELFNIIREFNLKVQVVMAFHEYG 333 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Yd------W--------sgY~~l~~mvr~~GLKvqvVmSFHqCG 333 (681)
+.+.|...|..||++||+.|-+.-= .|+.++..|+ - ..+++|++.+++.|+||.+=+-|--|+
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~---~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~ 118 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPP---SHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 118 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCC---CCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCcc
Confidence 5788999999999999999987742 2333333342 2 258999999999999997666665555
Q ss_pred C
Q 005715 334 A 334 (681)
Q Consensus 334 G 334 (681)
+
T Consensus 119 ~ 119 (428)
T PLN00196 119 A 119 (428)
T ss_pred c
Confidence 3
No 126
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=44.29 E-value=49 Score=33.17 Aligned_cols=66 Identities=12% Similarity=0.161 Sum_probs=48.6
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCC
Q 005715 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSG 338 (681)
Q Consensus 267 ~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD 338 (681)
.+...+..+++.+..+|+++|.+-+.++..+ ..+......++.++++++|+++ |+-.|-=|-.+|+
T Consensus 73 ~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~----~~~~~~~i~~v~~~~~~~g~~~--iie~~~~g~~~~~ 138 (235)
T cd00958 73 DNDKVLVASVEDAVRLGADAVGVTVYVGSEE----EREMLEELARVAAEAHKYGLPL--IAWMYPRGPAVKN 138 (235)
T ss_pred CCchhhhcCHHHHHHCCCCEEEEEEecCCch----HHHHHHHHHHHHHHHHHcCCCE--EEEEeccCCcccC
Confidence 3456677788999999999999999887443 3567778888999999999998 4444443433443
No 127
>PLN03231 putative alpha-galactosidase; Provisional
Probab=44.04 E-value=1.1e+02 Score=34.11 Aligned_cols=56 Identities=14% Similarity=0.264 Sum_probs=38.2
Q ss_pred CHHHHHHHH----HHHHHcCcceEEEeeeeeeecc----------------CCCcccc-----ch------HHHHHHHHH
Q 005715 268 DPELIRQEI----SHMKALNVDGVIVNCWWGIVEG----------------WNPQKYA-----WS------GYRELFNII 316 (681)
Q Consensus 268 ~~~~l~~~L----~~LK~aGVdGV~vDVWWGiVE~----------------~~p~~Yd-----Ws------gY~~l~~mv 316 (681)
+++.+.+.. +.||.+|-+.|.||.-|-.-+. .+-|+.- |- |.+.|++.|
T Consensus 16 ~E~~i~~~Ad~v~~gL~~~GY~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFPs~~~~~G~k~lADyv 95 (357)
T PLN03231 16 SEEQFLENAKIVSETLKPHGYEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWPSTTGGKGFAPIAAKV 95 (357)
T ss_pred CHHHHHHHHHHHHcchHHhCCEEEEECCcccccccccccccccccccccccCCCCCcccCcccCCCCccccCcHHHHHHH
Confidence 444444443 4689999999999977753321 1123222 22 899999999
Q ss_pred HHcCCcE
Q 005715 317 REFNLKV 323 (681)
Q Consensus 317 r~~GLKv 323 (681)
++.|||+
T Consensus 96 Hs~GLKf 102 (357)
T PLN03231 96 HALGLKL 102 (357)
T ss_pred HhCCcce
Confidence 9999998
No 128
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=44.03 E-value=1.2e+02 Score=32.02 Aligned_cols=113 Identities=12% Similarity=0.116 Sum_probs=0.0
Q ss_pred CCCccEEEEeeceeecCCccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEE
Q 005715 246 TPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (681)
Q Consensus 246 ~~~vpVyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqv 325 (681)
...+||.|..-.++ +..-+..+..+++|+|+|++ +=+ ---+.+-.+..+.|+-+.++ .++ +
T Consensus 67 ~~~~pvi~gv~~~t----------~~~i~~a~~a~~~Gad~v~~------~pP-~y~~~~~~~i~~~f~~v~~~-~~~-p 127 (289)
T cd00951 67 AGRVPVLAGAGYGT----------ATAIAYAQAAEKAGADGILL------LPP-YLTEAPQEGLYAHVEAVCKS-TDL-G 127 (289)
T ss_pred CCCCCEEEecCCCH----------HHHHHHHHHHHHhCCCEEEE------CCC-CCCCCCHHHHHHHHHHHHhc-CCC-C
Q ss_pred EEEeeccCCCCCCCccccCChhHHhhhccCCC-eEeecCCCCccc--cceecccCcccccCC
Q 005715 326 VMAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREGRRNT--ECLSWGVDKERVLNG 384 (681)
Q Consensus 326 VmSFHqCGGNVGD~~~IpLP~WV~e~g~~~PD-I~ytDr~G~rn~--E~LSlg~D~~pVl~G 384 (681)
||-++..| .+++ |.=+.+..+++|. +-++|.+|.-.. +++...-|+..||.|
T Consensus 128 i~lYn~~g------~~l~-~~~l~~L~~~~pnivgiKds~~d~~~~~~~~~~~~~~~~v~~G 182 (289)
T cd00951 128 VIVYNRAN------AVLT-ADSLARLAERCPNLVGFKDGVGDIELMRRIVAKLGDRLLYLGG 182 (289)
T ss_pred EEEEeCCC------CCCC-HHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHHhcCCCeEEEeC
No 129
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=43.70 E-value=1.8e+02 Score=34.49 Aligned_cols=51 Identities=8% Similarity=0.068 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEe
Q 005715 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (681)
Q Consensus 269 ~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSF 329 (681)
.+.++..++..+..||+.|.|-.-+..+ .--...+++++++|+++++.+||
T Consensus 96 ddvv~~~v~~a~~~Gid~~rifd~lnd~----------~~~~~ai~~ak~~G~~~~~~i~y 146 (593)
T PRK14040 96 DDVVERFVERAVKNGMDVFRVFDAMNDP----------RNLETALKAVRKVGAHAQGTLSY 146 (593)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeeeCCcH----------HHHHHHHHHHHHcCCeEEEEEEE
Confidence 4578889999999999998887533333 35778899999999999988887
No 130
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=43.66 E-value=39 Score=38.03 Aligned_cols=51 Identities=16% Similarity=0.210 Sum_probs=35.1
Q ss_pred HHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEe
Q 005715 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (681)
Q Consensus 275 ~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSF 329 (681)
.|..+|++||+||....-- + + ....++-..-.++-++|.++||+|-||=|+
T Consensus 15 ~l~~irQ~G~~giV~al~~-~--p-~gevW~~~~i~~~k~~ie~~GL~~~vvEs~ 65 (394)
T TIGR00695 15 SLEDVRQAGATGIVTALHH-I--P-NGEVWEKEEIRKRKEYIESAGLHWSVVESV 65 (394)
T ss_pred hHHHHhhcCCcceeecCCC-C--C-CCCCCCHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 4778888999999865521 1 1 122344555778888888899999887666
No 131
>PRK09505 malS alpha-amylase; Reviewed
Probab=43.60 E-value=58 Score=39.00 Aligned_cols=62 Identities=11% Similarity=0.175 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHcCcceEEEe-eeeeeecc-----------CCCccc-------------cchHHHHHHHHHHHcCCc
Q 005715 268 DPELIRQEISHMKALNVDGVIVN-CWWGIVEG-----------WNPQKY-------------AWSGYRELFNIIREFNLK 322 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~vD-VWWGiVE~-----------~~p~~Y-------------dWsgY~~l~~mvr~~GLK 322 (681)
|.+.|.+.|..||++||++|-+- ++=.+... .+...| ....+++|++-+++.|||
T Consensus 228 dl~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~ 307 (683)
T PRK09505 228 DLRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIR 307 (683)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCE
Confidence 67889999999999999999764 22111000 001111 345799999999999999
Q ss_pred EEEEEEe
Q 005715 323 VQVVMAF 329 (681)
Q Consensus 323 vqvVmSF 329 (681)
|..=+-+
T Consensus 308 VilD~V~ 314 (683)
T PRK09505 308 ILFDVVM 314 (683)
T ss_pred EEEEECc
Confidence 9555444
No 132
>PRK03906 mannonate dehydratase; Provisional
Probab=43.39 E-value=36 Score=38.01 Aligned_cols=64 Identities=11% Similarity=0.044 Sum_probs=41.4
Q ss_pred HHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChh
Q 005715 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQW 347 (681)
Q Consensus 275 ~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpLP~W 347 (681)
.|..+|++||+||..... .-.....++-....++-++|.++||+|-||=|+ +|-++...-+|.+
T Consensus 15 ~l~~~rQ~G~~~iv~~l~----~~~~g~~W~~~~i~~~~~~ie~~Gl~~~vvEs~-----pv~~~Ik~g~~~r 78 (385)
T PRK03906 15 TLEDIRQPGATGIVTALH----DIPVGEVWPVEEILARKAEIEAAGLEWSVVESV-----PVHEDIKTGTPNR 78 (385)
T ss_pred hHHHHhcCCCCceeecCC----CCCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCC-----CccHHHHcCCCCH
Confidence 477888899999986531 111123445566778888899999999887666 3444444444444
No 133
>PF06336 Corona_5a: Coronavirus 5a protein; InterPro: IPR009404 This family consists of several Coronavirus 5a proteins. The function of this family is unknown [].
Probab=43.18 E-value=7.3 Score=33.26 Aligned_cols=20 Identities=25% Similarity=0.619 Sum_probs=17.4
Q ss_pred ccccccccchHHHhHHHHHh
Q 005715 491 DYDSYYGRFFLNWYAQTLID 510 (681)
Q Consensus 491 ~w~S~YGkFFLsWYS~~Ll~ 510 (681)
.|.|.+||-|++-|-..|+.
T Consensus 2 kwltsfgra~iscykslllt 21 (65)
T PF06336_consen 2 KWLTSFGRAFISCYKSLLLT 21 (65)
T ss_pred chHHHHhHHHHHHHHHHHHH
Confidence 48999999999999987764
No 134
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=42.80 E-value=23 Score=37.74 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCcceEEE---eee-eeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEe
Q 005715 273 RQEISHMKALNVDGVIV---NCW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (681)
Q Consensus 273 ~~~L~~LK~aGVdGV~v---DVW-WGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSF 329 (681)
+..|+.||++|++.|.. ++- .-+-+.-.|++..|..|.+.++.++++|+++..-|-+
T Consensus 143 ~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~ii 203 (340)
T TIGR03699 143 REVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMF 203 (340)
T ss_pred HHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEe
Confidence 78999999999996631 000 1111212366779999999999999999998443333
No 135
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=42.09 E-value=22 Score=38.16 Aligned_cols=57 Identities=9% Similarity=0.197 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCcceEEE---eee-eeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEe
Q 005715 273 RQEISHMKALNVDGVIV---NCW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (681)
Q Consensus 273 ~~~L~~LK~aGVdGV~v---DVW-WGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSF 329 (681)
+..|++||++|++.+.. +.+ -.+...-.|++..+..+.+.+++++++||++-..|=|
T Consensus 141 ~e~l~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~ 201 (343)
T TIGR03551 141 EEALKRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMY 201 (343)
T ss_pred HHHHHHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEE
Confidence 67899999999998851 222 1111222466667778899999999999999555444
No 136
>PLN02877 alpha-amylase/limit dextrinase
Probab=41.92 E-value=44 Score=41.61 Aligned_cols=63 Identities=14% Similarity=0.348 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCcceEEE-eee-eeee-ccC-----------------------------CCccccchH----------
Q 005715 271 LIRQEISHMKALNVDGVIV-NCW-WGIV-EGW-----------------------------NPQKYAWSG---------- 308 (681)
Q Consensus 271 ~l~~~L~~LK~aGVdGV~v-DVW-WGiV-E~~-----------------------------~p~~YdWsg---------- 308 (681)
+.-.-|+.||++||..|++ +|+ .+-| |.. ....|+|-|
T Consensus 374 ~gi~hLk~LkelGVThVeLLPvfDf~tvdE~~~~~~~~~~~~l~~~~~~s~~~q~~v~~~~~~d~yNWGYDP~~YfaPEg 453 (970)
T PLN02877 374 AGVLHLKKLADAGLTHVHLLPTFQFGSVDDEKENWKCVDPKELEKLPPDSEEQQAAITAIQDDDGYNWGYNPVLWGVPKG 453 (970)
T ss_pred hHHHHHHHHHHcCCCEEEeCCccccCCcccccccccccccchhccccccchhhhhcccccccCCCCCCCCCccccCCCCc
Confidence 3445688899999999986 565 4443 211 013488866
Q ss_pred --------------HHHHHHHHHHcCCcEEEEEEe-eccC
Q 005715 309 --------------YRELFNIIREFNLKVQVVMAF-HEYG 333 (681)
Q Consensus 309 --------------Y~~l~~mvr~~GLKvqvVmSF-HqCG 333 (681)
++++++-++++||+|..=+-| |-..
T Consensus 454 SYatdP~g~~RI~efk~mV~~lH~~GI~VImDVVyNHt~~ 493 (970)
T PLN02877 454 SYASNPDGPCRIIEFRKMVQALNRIGLRVVLDVVYNHLHS 493 (970)
T ss_pred ccccCCCCcchHHHHHHHHHHHHHCCCEEEEEECCccccC
Confidence 899999999999999433333 4433
No 137
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=41.90 E-value=2e+02 Score=28.21 Aligned_cols=47 Identities=11% Similarity=0.120 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEee
Q 005715 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (681)
Q Consensus 271 ~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFH 330 (681)
..+..|+.|+++||+.+.+--.+ +..++.+.+++++. .++.+.+++|
T Consensus 16 ~~~~~l~~~~~~gv~~~v~~~~~------------~~~~~~~~~la~~~-~~i~~~~G~h 62 (251)
T cd01310 16 DRDDVLARAREAGVIKIIVVGTD------------LKSSKRALELAKKY-DNVYAAVGLH 62 (251)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCC------------HHHHHHHHHHHHhC-CCeEEEEeeC
Confidence 34778899999999988766322 12456677778887 6777778887
No 138
>PRK14706 glycogen branching enzyme; Provisional
Probab=41.50 E-value=63 Score=38.28 Aligned_cols=59 Identities=12% Similarity=0.206 Sum_probs=41.5
Q ss_pred ccCHHHHHHHH-HHHHHcCcceEEEeeeeeeeccCCCccccchH-----------------HHHHHHHHHHcCCcEEEEE
Q 005715 266 LVDPELIRQEI-SHMKALNVDGVIVNCWWGIVEGWNPQKYAWSG-----------------YRELFNIIREFNLKVQVVM 327 (681)
Q Consensus 266 l~~~~~l~~~L-~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsg-----------------Y~~l~~mvr~~GLKvqvVm 327 (681)
+-.-..+...| ..||++||+.|++=- +.|- |...+|-+ +++|++.+++.||+|..=+
T Consensus 163 ~~ty~~~~~~l~~ylk~lG~t~velmP---v~e~--~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 163 FLNYRELAHRLGEYVTYMGYTHVELLG---VMEH--PFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEccc---hhcC--CCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 44556777776 689999999988632 4453 44445543 7899999999999994333
Q ss_pred Ee
Q 005715 328 AF 329 (681)
Q Consensus 328 SF 329 (681)
-+
T Consensus 238 v~ 239 (639)
T PRK14706 238 VP 239 (639)
T ss_pred cc
Confidence 33
No 139
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=40.92 E-value=2.6e+02 Score=30.37 Aligned_cols=92 Identities=13% Similarity=0.198 Sum_probs=56.0
Q ss_pred cccCHHHHHHHHHHHHHcC--cceEEEeeeeeeeccCCCccccc-----hHH--HHHHHHHHHcCCcEEEEEEeeccCCC
Q 005715 265 QLVDPELIRQEISHMKALN--VDGVIVNCWWGIVEGWNPQKYAW-----SGY--RELFNIIREFNLKVQVVMAFHEYGAN 335 (681)
Q Consensus 265 ~l~~~~~l~~~L~~LK~aG--VdGV~vDVWWGiVE~~~p~~YdW-----sgY--~~l~~mvr~~GLKvqvVmSFHqCGGN 335 (681)
...+.+.+.+-++.+++.| +|+|.+|+=|.. .-+.|+| .-- +++++-+++.|+|| ++..|-+- +
T Consensus 19 ~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~----~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~--~~~i~P~v-~ 91 (339)
T cd06602 19 GYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD----RRRDFTLDPVRFPGLKMPEFVDELHANGQHY--VPILDPAI-S 91 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECccccc----CccceecccccCCCccHHHHHHHHHHCCCEE--EEEEeCcc-c
Confidence 3567788999999999865 688989866531 1234443 345 88999999999999 55554211 0
Q ss_pred CCCCccccCChhHHhhhccCCCeEeecCCCCc
Q 005715 336 DSGDAWISLPQWVMEIGKGNQDIFFTDREGRR 367 (681)
Q Consensus 336 VGD~~~IpLP~WV~e~g~~~PDI~ytDr~G~r 367 (681)
+.. ..-.-+.+ +++.+ -+.|.++.+|..
T Consensus 92 ~~~-~~~~~~~~--~e~~~-~g~~v~~~~g~~ 119 (339)
T cd06602 92 ANE-PTGSYPPY--DRGLE-MDVFIKNDDGSP 119 (339)
T ss_pred cCc-CCCCCHHH--HHHHH-CCeEEECCCCCE
Confidence 100 00011222 33333 377888888854
No 140
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=40.66 E-value=1.3e+02 Score=32.05 Aligned_cols=87 Identities=14% Similarity=0.214 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHcC--cceEEEeeeeeeeccCCCccccch-----HHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCcc
Q 005715 269 PELIRQEISHMKALN--VDGVIVNCWWGIVEGWNPQKYAWS-----GYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (681)
Q Consensus 269 ~~~l~~~L~~LK~aG--VdGV~vDVWWGiVE~~~p~~YdWs-----gY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~ 341 (681)
.+.+..-++.+++.| +|.|.+|.=|-.-+...-+.|+|. --+++++-+++.|+|| +++.|-+=.. +
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~--~~~i~P~i~~--~--- 100 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRL--APNIKPGLLQ--D--- 100 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEE--EEEeCCcccC--C---
Confidence 678888889999877 478888743322222112345554 3678889999999999 5566533211 1
Q ss_pred ccCChhHHhhhccCCCeEeecCCCCc
Q 005715 342 ISLPQWVMEIGKGNQDIFFTDREGRR 367 (681)
Q Consensus 342 IpLP~WV~e~g~~~PDI~ytDr~G~r 367 (681)
=|. -+++++. ++|.++.+|..
T Consensus 101 --~~~--y~e~~~~-g~~v~~~~g~~ 121 (317)
T cd06599 101 --HPR--YKELKEA-GAFIKPPDGRE 121 (317)
T ss_pred --CHH--HHHHHHC-CcEEEcCCCCC
Confidence 122 3344443 78888887753
No 141
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=40.34 E-value=1.8e+02 Score=30.63 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=36.2
Q ss_pred HHHHHHHHcCcceEEEeeeeeeecc------CCCccccchHHHHHHHHHHHcCCcEEEEEE
Q 005715 274 QEISHMKALNVDGVIVNCWWGIVEG------WNPQKYAWSGYRELFNIIREFNLKVQVVMA 328 (681)
Q Consensus 274 ~~L~~LK~aGVdGV~vDVWWGiVE~------~~p~~YdWsgY~~l~~mvr~~GLKvqvVmS 328 (681)
++++..+++|++.|.+-+ ..-|. ...-...+.-+.++++.+++.|++|.+.+.
T Consensus 75 ~di~~a~~~g~~~i~i~~--~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 75 DDARIAVETGVDGVDLVF--GTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred HHHHHHHHcCcCEEEEEE--ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 357777788999887754 21111 012234577788899999999999977664
No 142
>PRK04326 methionine synthase; Provisional
Probab=40.26 E-value=56 Score=34.60 Aligned_cols=78 Identities=15% Similarity=0.081 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhH
Q 005715 270 ELIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWV 348 (681)
Q Consensus 270 ~~l~~~L~~LK~aGVdGV~vDVW-WGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpLP~WV 348 (681)
+.+...+++|+++|++.|.+|.= |.. .+. ++..+.+.++.+-+ +++.. ...|-|.||.. |.|
T Consensus 161 ~~~~~~i~~l~~~G~~~iqidEP~l~~----~~~--~~~~~~~~l~~~~~-~~~~~--v~lH~C~G~~~-------~~~- 223 (330)
T PRK04326 161 KVINEEIKNLVEAGAKYIQIDEPALAT----HPE--DVEIAVEALNRIVK-GINAK--LGLHVCYGDYS-------RIA- 223 (330)
T ss_pred HHHHHHHHHHHHCCCCEEEecCchhhc----CHH--HHHHHHHHHHHHHh-CCCCE--EEEEEeCCCcH-------HHH-
Confidence 57778889999999999999873 543 122 33444455544443 44543 35699987753 111
Q ss_pred HhhhccCCCeEeecCC
Q 005715 349 MEIGKGNQDIFFTDRE 364 (681)
Q Consensus 349 ~e~g~~~PDI~ytDr~ 364 (681)
....+.+-|.+..|-.
T Consensus 224 ~~l~~~~vd~i~~d~~ 239 (330)
T PRK04326 224 PYILEFPVDQFDLEFA 239 (330)
T ss_pred HHHHhCCCCEEEEEeC
Confidence 1123556676666554
No 143
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=40.19 E-value=18 Score=36.35 Aligned_cols=47 Identities=6% Similarity=0.154 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcE
Q 005715 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (681)
Q Consensus 269 ~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKv 323 (681)
++.++++|.+||+.||..|-+ .+|...=..|... .|.+.++++||+|
T Consensus 57 ~RdL~~DL~~Lk~~G~~~Vvt-----l~~~~EL~~l~Vp---~L~~~~~~~Gi~~ 103 (168)
T PF05706_consen 57 RRDLQADLERLKDWGAQDVVT-----LLTDHELARLGVP---DLGEAAQARGIAW 103 (168)
T ss_dssp EB-HHHHHHHHHHTT--EEEE------S-HHHHHHTT-T---THHHHHHHTT-EE
T ss_pred cchHHHHHHHHHHCCCCEEEE-----eCcHHHHHHcCCc---cHHHHHHHcCCEE
Confidence 468999999999999999865 6776555566655 5668899999987
No 144
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=39.55 E-value=7.6 Score=41.55 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=26.0
Q ss_pred cceEeccCCcccCCC-CCcchHHHHHHHhcc
Q 005715 644 SFFMYQQPSSLLQGT-ICFSDLGYVIKCMHG 673 (681)
Q Consensus 644 ~~FTyLRm~~~lf~~-~n~~~F~~FVr~M~~ 673 (681)
.=||++|||.+|+.| .+|..+.+|++.|..
T Consensus 96 ~PfTiqRlcEl~~~P~~~y~~~~k~~~alek 126 (288)
T PF09184_consen 96 PPFTIQRLCELLLDPRKHYKTLDKFLRALEK 126 (288)
T ss_pred CChhHHHHHHHHhChhhccccHHHHHHHHhe
Confidence 349999999999998 479999999998853
No 145
>PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2.1.1.14 from EC from bacteria and plants. Plants are the only higher eukaryotes that have the required enzymes for methionine synthesis []. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to homocysteine []. The aligned region makes up the carboxy region of the approximately 750 amino acid protein except in some hypothetical archaeal proteins present in the family, where this region corresponds to the entire length.; GO: 0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, 0009086 methionine biosynthetic process; PDB: 1U22_A 1U1H_A 1U1U_A 1U1J_A 3BQ5_A 3BQ6_A 1XDJ_B 1XR2_B 1T7L_B 1XPG_B ....
Probab=39.31 E-value=67 Score=34.03 Aligned_cols=86 Identities=19% Similarity=0.106 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcc------ccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCcccc
Q 005715 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQK------YAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWIS 343 (681)
Q Consensus 270 ~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~------YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~Ip 343 (681)
+++.+++++|..+|+.-|-+|.= .+.+.-.... .+|.-..+.++.+- .+..+ .+++|-|+||..+..
T Consensus 154 ~a~~~ei~~l~~~G~~~iQiDeP-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~v~~H~C~~~~~~~~--- 226 (324)
T PF01717_consen 154 EAYREEIRALYDAGCRYIQIDEP-ALSEGPPDASFDRDEYLDEAVAAEALNRAV-KGEDA--TVGVHVCRGNYPSIL--- 226 (324)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEET-CHHCTSCSSHHHHHHHHHHHHHHHHHHHTT-STTTS--EEEEEESSSCHCTTH---
T ss_pred HHHHHHHHHHHHCCCCEEEecch-HhhcchhhhcccHHHHHHHHHHHHHHHhcc-CCCCC--EEEEEecCccchhhH---
Confidence 57788899999999999999976 2222211111 12332222222221 24444 569999999854321
Q ss_pred CChhHHhhhccCCCeEeecCCCCc
Q 005715 344 LPQWVMEIGKGNQDIFFTDREGRR 367 (681)
Q Consensus 344 LP~WV~e~g~~~PDI~ytDr~G~r 367 (681)
....+.+-|.|+-+=+..+
T Consensus 227 -----~~l~~~~vd~~~lE~~~~~ 245 (324)
T PF01717_consen 227 -----PLLADLNVDAFFLEFADRR 245 (324)
T ss_dssp -----HHHHCSS-SEEEEEETSST
T ss_pred -----HHHhhcccceEEeecccCC
Confidence 2334677787776555544
No 146
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=39.24 E-value=2.1e+02 Score=30.08 Aligned_cols=84 Identities=12% Similarity=0.160 Sum_probs=49.8
Q ss_pred HHHHHHHHcCcceEEEeee---eeeecc-CCCccccchHHHHHHHHHHHcCCcEEE-EEEeeccCCCCCCCccccCChhH
Q 005715 274 QEISHMKALNVDGVIVNCW---WGIVEG-WNPQKYAWSGYRELFNIIREFNLKVQV-VMAFHEYGANDSGDAWISLPQWV 348 (681)
Q Consensus 274 ~~L~~LK~aGVdGV~vDVW---WGiVE~-~~p~~YdWsgY~~l~~mvr~~GLKvqv-VmSFHqCGGNVGD~~~IpLP~WV 348 (681)
..++.++..|++.|.+-+= +-+-+. ....+..+.-..++++++++.|+++++ .|.| + |... .-|..+
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~--~-----d~~~-~~~~~~ 153 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF--F-----DGYK-ANPEYA 153 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec--c-----ccCC-CCHHHH
Confidence 4577788999999887432 101111 112345678899999999999999977 3344 2 2122 246777
Q ss_pred Hhhhc----cCCC-eEeecCCC
Q 005715 349 MEIGK----GNQD-IFFTDREG 365 (681)
Q Consensus 349 ~e~g~----~~PD-I~ytDr~G 365 (681)
.+..+ .-+| |.+.|-.|
T Consensus 154 ~~~~~~~~~~g~~~i~l~DT~G 175 (273)
T cd07941 154 LATLKAAAEAGADWLVLCDTNG 175 (273)
T ss_pred HHHHHHHHhCCCCEEEEecCCC
Confidence 65432 1222 55556555
No 147
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=39.13 E-value=4.2e+02 Score=28.33 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=50.2
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEE---eee--eeeeccCC-CccccchHHHHHHHHHHHcCCcEEEEE
Q 005715 265 QLVDPELIRQEISHMKALNVDGVIV---NCW--WGIVEGWN-PQKYAWSGYRELFNIIREFNLKVQVVM 327 (681)
Q Consensus 265 ~l~~~~~l~~~L~~LK~aGVdGV~v---DVW--WGiVE~~~-p~~YdWsgY~~l~~mvr~~GLKvqvVm 327 (681)
.+-..+.|++.+..|...|.+.+++ |-+ -|.-|-.. .+.|.=+-++++.+.|++.|+.|+|-+
T Consensus 12 ~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~gI~vIPei 80 (301)
T cd06565 12 AVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAAELGIEVIPLI 80 (301)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHHHcCCEEEecC
Confidence 5667799999999999999999976 322 44444322 688888999999999999999997754
No 148
>PLN02960 alpha-amylase
Probab=39.08 E-value=86 Score=38.89 Aligned_cols=57 Identities=12% Similarity=0.210 Sum_probs=41.2
Q ss_pred ccCHHHHH-HHHHHHHHcCcceEEEeeeeeeeccCCCccccchH-----------------HHHHHHHHHHcCCcEEEEE
Q 005715 266 LVDPELIR-QEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSG-----------------YRELFNIIREFNLKVQVVM 327 (681)
Q Consensus 266 l~~~~~l~-~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsg-----------------Y~~l~~mvr~~GLKvqvVm 327 (681)
+-.-.++. ..|..||++||+.|.+- .+.|- ++...|-+ +++|++.+++.||+| ||
T Consensus 412 ~gtf~~~~e~~LdYLk~LGvt~IeLm---Pv~e~--~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~V--IL 484 (897)
T PLN02960 412 ISSFKEFTQKVLPHVKKAGYNAIQLI---GVQEH--KDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLV--FL 484 (897)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEC---CcccC--CCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEE--EE
Confidence 34556775 45999999999999874 24442 34444543 899999999999999 55
Q ss_pred Ee
Q 005715 328 AF 329 (681)
Q Consensus 328 SF 329 (681)
-+
T Consensus 485 Dv 486 (897)
T PLN02960 485 DI 486 (897)
T ss_pred Ee
Confidence 44
No 149
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=38.90 E-value=1.9e+02 Score=29.02 Aligned_cols=106 Identities=19% Similarity=0.285 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccC------CCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCcc
Q 005715 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGW------NPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAW 341 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~------~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~ 341 (681)
+.+.++..+++++..|++.|.+-+= +-|.. ..-+....-..++++++++.|+++ .+++ -| ..
T Consensus 65 ~~~~i~~~~~~~~~~g~~~i~i~~~--~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v--~~~~-------~~-~~ 132 (237)
T PF00682_consen 65 NEEDIERAVEAAKEAGIDIIRIFIS--VSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV--AFGC-------ED-AS 132 (237)
T ss_dssp CHHHHHHHHHHHHHTTSSEEEEEEE--TSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE--EEEE-------TT-TG
T ss_pred hHHHHHHHHHhhHhccCCEEEecCc--ccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce--EeCc-------cc-cc
Confidence 5577888899999999999886542 22211 112233667889999999999999 3333 11 22
Q ss_pred ccCChhHHhh----hccCCC-eEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHHh
Q 005715 342 ISLPQWVMEI----GKGNQD-IFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDD 404 (681)
Q Consensus 342 IpLP~WV~e~----g~~~PD-I~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~ 404 (681)
-.=|..+.+. -+..+| |.+.|-.|.- +|.++| ++.+.+++++.+
T Consensus 133 ~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~------------------~P~~v~-~lv~~~~~~~~~ 181 (237)
T PF00682_consen 133 RTDPEELLELAEALAEAGADIIYLADTVGIM------------------TPEDVA-ELVRALREALPD 181 (237)
T ss_dssp GSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-------------------HHHHH-HHHHHHHHHSTT
T ss_pred cccHHHHHHHHHHHHHcCCeEEEeeCccCCc------------------CHHHHH-HHHHHHHHhccC
Confidence 2334555553 233456 6677777744 555544 777777776653
No 150
>PRK07094 biotin synthase; Provisional
Probab=38.58 E-value=45 Score=35.07 Aligned_cols=56 Identities=11% Similarity=0.115 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCcceEEEeee---eeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEe
Q 005715 273 RQEISHMKALNVDGVIVNCW---WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (681)
Q Consensus 273 ~~~L~~LK~aGVdGV~vDVW---WGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSF 329 (681)
+..|+.||++|++.|.+.+= -.+.+.-.+ ...|..+.+.++.++++|+++..-+-+
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~-~~s~~~~~~~i~~l~~~Gi~v~~~~ii 187 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHP-GMSFENRIACLKDLKELGYEVGSGFMV 187 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCC-CCCHHHHHHHHHHHHHcCCeecceEEE
Confidence 46788999999999987541 112222223 578999999999999999987444433
No 151
>PRK05402 glycogen branching enzyme; Provisional
Probab=38.55 E-value=72 Score=38.07 Aligned_cols=61 Identities=11% Similarity=0.179 Sum_probs=41.0
Q ss_pred ccccCHHHHHHHH-HHHHHcCcceEEEeeeeeeeccCCCccccc-----------------hHHHHHHHHHHHcCCcEEE
Q 005715 264 CQLVDPELIRQEI-SHMKALNVDGVIVNCWWGIVEGWNPQKYAW-----------------SGYRELFNIIREFNLKVQV 325 (681)
Q Consensus 264 ~~l~~~~~l~~~L-~~LK~aGVdGV~vDVWWGiVE~~~p~~YdW-----------------sgY~~l~~mvr~~GLKvqv 325 (681)
+..-+-+++...| ..||++||+.|.+-=- .|. |...+| ..+++|++.|++.||+|..
T Consensus 259 ~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi---~e~--~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~Vil 333 (726)
T PRK05402 259 GRFLSYRELADQLIPYVKEMGFTHVELLPI---AEH--PFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVIL 333 (726)
T ss_pred CcccCHHHHHHHHHHHHHHcCCCEEEECCc---ccC--CCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 3344557888886 9999999999976431 221 211122 2478999999999999944
Q ss_pred EEEe
Q 005715 326 VMAF 329 (681)
Q Consensus 326 VmSF 329 (681)
=+-|
T Consensus 334 D~V~ 337 (726)
T PRK05402 334 DWVP 337 (726)
T ss_pred EECC
Confidence 4444
No 152
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=38.37 E-value=1.2e+02 Score=33.09 Aligned_cols=73 Identities=12% Similarity=0.195 Sum_probs=48.5
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhHHhhh-
Q 005715 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIG- 352 (681)
Q Consensus 274 ~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpLP~WV~e~g- 352 (681)
.+|+...+.||+.|.|-.-+... .--.+.++.+|+.|+++++.+.. ..-.-|.-+.+..
T Consensus 91 ~dl~~a~~~gvd~iri~~~~~e~----------d~~~~~i~~ak~~G~~v~~~l~~----------s~~~~~e~l~~~a~ 150 (333)
T TIGR03217 91 HDLKAAYDAGARTVRVATHCTEA----------DVSEQHIGMARELGMDTVGFLMM----------SHMTPPEKLAEQAK 150 (333)
T ss_pred HHHHHHHHCCCCEEEEEeccchH----------HHHHHHHHHHHHcCCeEEEEEEc----------ccCCCHHHHHHHHH
Confidence 57899999999999987743322 24689999999999999765543 1122455555532
Q ss_pred ---ccCCC-eEeecCCCC
Q 005715 353 ---KGNQD-IFFTDREGR 366 (681)
Q Consensus 353 ---~~~PD-I~ytDr~G~ 366 (681)
+.-+| |.++|-.|.
T Consensus 151 ~~~~~Ga~~i~i~DT~G~ 168 (333)
T TIGR03217 151 LMESYGADCVYIVDSAGA 168 (333)
T ss_pred HHHhcCCCEEEEccCCCC
Confidence 22344 666776663
No 153
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=38.21 E-value=67 Score=33.97 Aligned_cols=50 Identities=8% Similarity=0.077 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEE
Q 005715 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (681)
Q Consensus 270 ~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVm 327 (681)
..+++-|+..|++|++.|+|. .+--...-.-..++++++++.|||+.+=+
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEiS--------~G~~~i~~~~~~rlI~~~~~~g~~v~~Ev 120 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEIS--------DGSMEISLEERCNLIERAKDNGFMVLSEV 120 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEEc--------CCccCCCHHHHHHHHHHHHhCCCeEeccc
Confidence 789999999999999999984 23334455667889999999999995543
No 154
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=37.87 E-value=1.9e+02 Score=29.77 Aligned_cols=111 Identities=14% Similarity=0.195 Sum_probs=67.1
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc--cchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccC
Q 005715 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY--AWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISL 344 (681)
Q Consensus 267 ~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Y--dWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpL 344 (681)
-|...++++|++|+++|+|-+++||= +|.| |.+.=-++++.+|+..-++ .+..|-- +.=
T Consensus 9 ad~~~l~~~i~~l~~~g~~~lH~Dvm--------DG~Fvpn~tfg~~~i~~i~~~~~~~--~~dvHLM---------v~~ 69 (220)
T PRK08883 9 ADFARLGEDVEKVLAAGADVVHFDVM--------DNHYVPNLTFGAPICKALRDYGITA--PIDVHLM---------VKP 69 (220)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecc--------cCcccCccccCHHHHHHHHHhCCCC--CEEEEec---------cCC
Confidence 36788999999999999999999983 5666 4555556666676652122 2444522 222
Q ss_pred Ch-hHHhhhccCCCeEeecCCCCcc-ccce----ecccCcccccCCCchhHHHHHHHH
Q 005715 345 PQ-WVMEIGKGNQDIFFTDREGRRN-TECL----SWGVDKERVLNGRTGIEVYFDFMR 396 (681)
Q Consensus 345 P~-WV~e~g~~~PDI~ytDr~G~rn-~E~L----Slg~D~~pVl~GRTpiq~Y~DFmr 396 (681)
|. |+..-.+..+|++..--+=..+ .+.| ..|+----+|+--||++.+..+..
T Consensus 70 p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~ 127 (220)
T PRK08883 70 VDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMD 127 (220)
T ss_pred HHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH
Confidence 33 6655556667755544332222 1222 244433344677899999876653
No 155
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=37.75 E-value=35 Score=36.06 Aligned_cols=56 Identities=13% Similarity=0.214 Sum_probs=39.8
Q ss_pred HHHHHHHHHHcCcceEE-Ee--ee-eeeeccCCCccccchHHHHHHHHHHHcCCcEEEEE
Q 005715 272 IRQEISHMKALNVDGVI-VN--CW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVM 327 (681)
Q Consensus 272 l~~~L~~LK~aGVdGV~-vD--VW-WGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVm 327 (681)
.+..|++||++|++.+. +. .. -.+...-.|++..|..|.+.++.+++.|+++-.-|
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~ 165 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATM 165 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeE
Confidence 36889999999999774 11 11 11112223778899999999999999999984433
No 156
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=37.62 E-value=40 Score=37.28 Aligned_cols=54 Identities=19% Similarity=0.159 Sum_probs=36.8
Q ss_pred CHHHHHHHHHHHHHcCcceEEEe---ee-eeeeccCCCccccchHHHHHHHHHHHcCCcEEEE
Q 005715 268 DPELIRQEISHMKALNVDGVIVN---CW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVV 326 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~vD---VW-WGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvV 326 (681)
.+-.+...+++|+++|++||++. +| |+..+.+. + .-++++-++++++||+|..|
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~----~-~~~~~lk~~L~~~GL~v~~v 87 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQER----D-QIVRRFKKALDETGLKVPMV 87 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHH----H-HHHHHHHHHHHHhCCeEEEe
Confidence 34466788999999999999864 22 33332110 1 22678999999999999443
No 157
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=37.53 E-value=1.7e+02 Score=30.14 Aligned_cols=83 Identities=17% Similarity=0.229 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCcc------ccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCCh
Q 005715 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQK------YAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQ 346 (681)
Q Consensus 273 ~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~------YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpLP~ 346 (681)
.++++..+..|++.|.+-+-.. |...-.+ .-+....++++.+++.|+++. +++ -|.... -|.
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s--~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~--~~~-------~~~~~~-~~~ 139 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVS--DIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS--VGA-------EDASRA-DPD 139 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE--Eee-------ccCCCC-CHH
Confidence 3456777889999888877322 2111112 235678899999999999774 333 122333 366
Q ss_pred hHHhhh----ccCCC-eEeecCCCCc
Q 005715 347 WVMEIG----KGNQD-IFFTDREGRR 367 (681)
Q Consensus 347 WV~e~g----~~~PD-I~ytDr~G~r 367 (681)
.+.+.. +.-+| |.+.|-.|.-
T Consensus 140 ~~~~~~~~~~~~G~~~i~l~DT~G~~ 165 (259)
T cd07939 140 FLIEFAEVAQEAGADRLRFADTVGIL 165 (259)
T ss_pred HHHHHHHHHHHCCCCEEEeCCCCCCC
Confidence 665542 22233 6666666633
No 158
>PRK08508 biotin synthase; Provisional
Probab=37.37 E-value=42 Score=35.17 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeeccCCCc-------cccchHHHHHHHHHHHcCCcEEEEEEe
Q 005715 273 RQEISHMKALNVDGVIVNCWWGIVEGWNPQ-------KYAWSGYRELFNIIREFNLKVQVVMAF 329 (681)
Q Consensus 273 ~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~-------~YdWsgY~~l~~mvr~~GLKvqvVmSF 329 (681)
+..|++||++|++.+.++ +|. ++. -.+|.-..+.++.+++.|+++-.-|=+
T Consensus 102 ~e~l~~Lk~aGld~~~~~-----lEt-~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~ 159 (279)
T PRK08508 102 VEQLKELKKAGIFSYNHN-----LET-SKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIF 159 (279)
T ss_pred HHHHHHHHHcCCCEEccc-----ccc-hHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEE
Confidence 678999999999999985 454 221 256778888888999999988444433
No 159
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=37.07 E-value=4.5e+02 Score=27.98 Aligned_cols=131 Identities=12% Similarity=0.193 Sum_probs=80.2
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeee----eee--------ecc-------CCCccccchHHHHHHHHHHHcCCcEEE
Q 005715 265 QLVDPELIRQEISHMKALNVDGVIVNCW----WGI--------VEG-------WNPQKYAWSGYRELFNIIREFNLKVQV 325 (681)
Q Consensus 265 ~l~~~~~l~~~L~~LK~aGVdGV~vDVW----WGi--------VE~-------~~p~~YdWsgY~~l~~mvr~~GLKvqv 325 (681)
.+-..+.|++.+..|...+...+.+-.= |-+ .+. ...+.|.=.-+++|++.|++.|+.|.|
T Consensus 11 ~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~rgI~viP 90 (303)
T cd02742 11 HFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAARGIEVIP 90 (303)
T ss_pred cCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHcCCEEEE
Confidence 4667899999999999999988765443 432 121 124578889999999999999999976
Q ss_pred EEEe--ec-----------cCC-------CCCCCccccCCh---hHHhhhccCCCeEeecCCCCccccceecccCccccc
Q 005715 326 VMAF--HE-----------YGA-------NDSGDAWISLPQ---WVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVL 382 (681)
Q Consensus 326 VmSF--Hq-----------CGG-------NVGD~~~IpLP~---WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pVl 382 (681)
-+-+ |. |.. ...+.-++.-|. .|.+.-++--++| ..+|+-+|.|+....
T Consensus 91 EiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf--------~~~~iHiGgDE~~~~ 162 (303)
T cd02742 91 EIDMPGHSTAFVKSFPKLLTECYAGLKLRDVFDPLDPTLPKGYDFLDDLFGEIAELF--------PDRYLHIGGDEAHFK 162 (303)
T ss_pred eccchHHHHHHHHhCHHhccCccccCCCCCCCCccCCCCccHHHHHHHHHHHHHHhC--------CCCeEEecceecCCC
Confidence 5533 11 000 000011111111 1111111111111 247899999998643
Q ss_pred CCCchhHHHHHHHHHHHHHHHhh
Q 005715 383 NGRTGIEVYFDFMRSFRTEFDDL 405 (681)
Q Consensus 383 ~GRTpiq~Y~DFmrSFr~~F~~~ 405 (681)
.++.+.|..|+....+.....
T Consensus 163 --~~~~~l~~~f~~~~~~~v~~~ 183 (303)
T cd02742 163 --QDRKHLMSQFIQRVLDIVKKK 183 (303)
T ss_pred --CCHHHHHHHHHHHHHHHHHHc
Confidence 567888888888887777654
No 160
>PRK09936 hypothetical protein; Provisional
Probab=36.57 E-value=65 Score=35.19 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeee--eeeeccCCCccccch----HHHHHHHHHHHcCCcEEEEEEe
Q 005715 268 DPELIRQEISHMKALNVDGVIVNCW--WGIVEGWNPQKYAWS----GYRELFNIIREFNLKVQVVMAF 329 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~vDVW--WGiVE~~~p~~YdWs----gY~~l~~mvr~~GLKvqvVmSF 329 (681)
.+++|+.-|+++|.+|++-+.|- | ||-- ||. +..++++.+++.||||++=|-|
T Consensus 36 ~~~qWq~~~~~~~~~G~~tLivQ-Wt~yG~~--------~fg~~~g~La~~l~~A~~~Gl~v~vGL~~ 94 (296)
T PRK09936 36 TDTQWQGLWSQLRLQGFDTLVVQ-WTRYGDA--------DFGGQRGWLAKRLAAAQQAGLKLVVGLYA 94 (296)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEE-eeeccCC--------CcccchHHHHHHHHHHHHcCCEEEEcccC
Confidence 57899999999999999999885 3 3321 443 5678999999999999555544
No 161
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=35.73 E-value=45 Score=35.28 Aligned_cols=44 Identities=14% Similarity=0.103 Sum_probs=34.7
Q ss_pred HHHHHHcCcceEEEeeeeeeeccCCC---ccccchHHHHHHHHHHHcCCcE
Q 005715 276 ISHMKALNVDGVIVNCWWGIVEGWNP---QKYAWSGYRELFNIIREFNLKV 323 (681)
Q Consensus 276 L~~LK~aGVdGV~vDVWWGiVE~~~p---~~YdWsgY~~l~~mvr~~GLKv 323 (681)
+..++++|++|||+|-+ .+.+. ..+++....+.++.+|++||+.
T Consensus 137 ~~~a~~aG~~gvMlDTa----~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 137 PEIAAEAGFDGVMLDTA----DKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred HHHHHHcCCCEEEEecc----cCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 56789999999999976 33333 3456777888899999999998
No 162
>PRK15452 putative protease; Provisional
Probab=35.62 E-value=39 Score=38.31 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=31.0
Q ss_pred CCCccEEEEeeceeecCCccccCHHHHHHHHHHHHHcCcceEEEee
Q 005715 246 TPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNC 291 (681)
Q Consensus 246 ~~~vpVyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDV 291 (681)
..+++|||.+|.- ..+ .+-+.+...|+.|+++|||||.|.-
T Consensus 57 ~~g~kvyvt~n~i--~~e---~el~~~~~~l~~l~~~gvDgvIV~d 97 (443)
T PRK15452 57 ALGKKFYVVVNIA--PHN---AKLKTFIRDLEPVIAMKPDALIMSD 97 (443)
T ss_pred HcCCEEEEEecCc--CCH---HHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 3568999999843 222 2346788889999999999999864
No 163
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=35.50 E-value=1.3e+02 Score=37.12 Aligned_cols=65 Identities=18% Similarity=0.180 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc-------------cchHHHHHHHHHHHcCCcEEEEEEeeccC
Q 005715 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY-------------AWSGYRELFNIIREFNLKVQVVMAFHEYG 333 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Y-------------dWsgY~~l~~mvr~~GLKvqvVmSFHqCG 333 (681)
+.+.+.+.|..|+.+||+.|.+---+-.... +..-| ....+++|++.+++.||+|.+=+-+.-++
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~g-s~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a 91 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPG-STHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMA 91 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCC-CCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 4478999999999999999977654432211 22233 36789999999999999996655554444
No 164
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=35.44 E-value=1.3e+02 Score=37.28 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc-------------cchHHHHHHHHHHHcCCcEEEEEEeeccC
Q 005715 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY-------------AWSGYRELFNIIREFNLKVQVVMAFHEYG 333 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Y-------------dWsgY~~l~~mvr~~GLKvqvVmSFHqCG 333 (681)
+-+.+.+.|..||++||+.|-+.--+-.... +...| ....++++++.+++.||||..=+-+.-|+
T Consensus 18 tf~~~~~~l~YL~~LGis~IyLsPi~~a~~g-s~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~ 95 (879)
T PRK14511 18 TFDDAAELVPYFADLGVSHLYLSPILAARPG-STHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMA 95 (879)
T ss_pred CHHHHHHHhHHHHHcCCCEEEECcCccCCCC-CCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecccccc
Confidence 3478999999999999999977554322111 12222 35789999999999999996666665554
No 165
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=35.39 E-value=3.4e+02 Score=29.11 Aligned_cols=87 Identities=13% Similarity=0.239 Sum_probs=55.2
Q ss_pred ccCHHHHHHHHHHHHHcC--cceEEEeeeeeeeccCCCccccch-----HHHHHHHHHHHcCCcEEEEEEeeccCCCCCC
Q 005715 266 LVDPELIRQEISHMKALN--VDGVIVNCWWGIVEGWNPQKYAWS-----GYRELFNIIREFNLKVQVVMAFHEYGANDSG 338 (681)
Q Consensus 266 l~~~~~l~~~L~~LK~aG--VdGV~vDVWWGiVE~~~p~~YdWs-----gY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD 338 (681)
..+.+.+..-++.+++.+ +|.|.+|+=|. . +-+.|+|. --+++++-+++.|+||.+++-=|-+ .
T Consensus 20 y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~--~--~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~-----~ 90 (317)
T cd06600 20 YYPQDKVVEVVDIMQKEGFPYDVVFLDIHYM--D--SYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIR-----V 90 (317)
T ss_pred CCCHHHHHHHHHHHHHcCCCcceEEEChhhh--C--CCCceeechhcCCCHHHHHHHHHHCCCEEEEEeecccc-----C
Confidence 467788899999999866 58899997552 1 23455554 4778999999999998544432211 0
Q ss_pred CccccCChhHHhhhccCCCeEeecCCCC
Q 005715 339 DAWISLPQWVMEIGKGNQDIFFTDREGR 366 (681)
Q Consensus 339 ~~~IpLP~WV~e~g~~~PDI~ytDr~G~ 366 (681)
+. .-|.+. ++ ...+.|.++.+|.
T Consensus 91 ~~--~~~~~~--~~-~~~~~~v~~~~g~ 113 (317)
T cd06600 91 DQ--NYSPFL--SG-MDKGKFCEIESGE 113 (317)
T ss_pred CC--CChHHH--HH-HHCCEEEECCCCC
Confidence 10 023332 22 2347888888875
No 166
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=35.26 E-value=77 Score=32.97 Aligned_cols=50 Identities=10% Similarity=0.253 Sum_probs=34.2
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEe
Q 005715 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (681)
Q Consensus 266 l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSF 329 (681)
-.+.+.++++|+.||++|+..|.+- ...+ -.++.++|-+.||-|..=+..
T Consensus 32 a~~~~~~~~d~~l~k~~G~N~iR~~---h~p~-----------~~~~~~~cD~~GilV~~e~~~ 81 (298)
T PF02836_consen 32 AMPDEAMERDLELMKEMGFNAIRTH---HYPP-----------SPRFYDLCDELGILVWQEIPL 81 (298)
T ss_dssp ---HHHHHHHHHHHHHTT-SEEEET---TS-------------SHHHHHHHHHHT-EEEEE-S-
T ss_pred cCCHHHHHHHHHHHHhcCcceEEcc---cccC-----------cHHHHHHHhhcCCEEEEeccc
Confidence 3577999999999999999999982 1222 157889999999999665555
No 167
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=35.01 E-value=30 Score=42.34 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=25.1
Q ss_pred CCCChHHHHHHH--hh-cCcEEEEeee------cC-C---CCC----CCCCCChHHHHHHHHH
Q 005715 557 NQDGYAPVFEVL--KK-HSVTMKFVCA------VP-S---LQD----QEALADPEGLSWQVLN 602 (681)
Q Consensus 557 ~rDGY~pIa~mf--ar-h~v~l~FTCl------M~-d---~e~----~~a~s~Pe~Lv~QV~~ 602 (681)
..||=..|++-= |+ .+|.+.=.|. |. + ++. .+..+.|+.|+-|...
T Consensus 993 ~~d~g~~i~~~ev~a~~~~vv~~~~~~v~~~~~m~~~~q~eee~d~~~~~~~~~~~l~e~~~e 1055 (1194)
T KOG4246|consen 993 TVDGGREIADKEVVAKTKEVVGSKEVTVGEAVNMEVENQDEEEDDGDDDPEEDPEELPEEDPE 1055 (1194)
T ss_pred cccchhhhhhHHHHHhhcceeeecchhhhhhhhhhhhhcchhhcccccCcccchhhccCCCcc
Confidence 346667776532 22 5666666665 44 1 111 3356677777766543
No 168
>PRK08445 hypothetical protein; Provisional
Probab=34.73 E-value=46 Score=36.25 Aligned_cols=57 Identities=12% Similarity=0.191 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCcceEE---Eeee-eeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEe
Q 005715 273 RQEISHMKALNVDGVI---VNCW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (681)
Q Consensus 273 ~~~L~~LK~aGVdGV~---vDVW-WGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSF 329 (681)
+..|++||++|++-+. +... -.+-+.-.|+.-.-..|.+..+.++++||++-.-|=|
T Consensus 144 ~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~sg~i~ 204 (348)
T PRK08445 144 KEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTATMMF 204 (348)
T ss_pred HHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeeeEEEe
Confidence 6799999999999543 3322 2222333366777777899999999999999655555
No 169
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=34.72 E-value=2.1e+02 Score=30.94 Aligned_cols=93 Identities=18% Similarity=0.209 Sum_probs=62.6
Q ss_pred CCCccEEEEeeceeecCCccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEE
Q 005715 246 TPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (681)
Q Consensus 246 ~~~vpVyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqv 325 (681)
...+|+-+|.=...|- ...+++=++.+|++|||||.|.= =| + ..=+++.+.++++||+...
T Consensus 92 ~~~~Pivlm~Y~Npi~-------~~Gie~F~~~~~~~GvdGlivpD--------LP--~--ee~~~~~~~~~~~gi~~I~ 152 (265)
T COG0159 92 GVKVPIVLMTYYNPIF-------NYGIEKFLRRAKEAGVDGLLVPD--------LP--P--EESDELLKAAEKHGIDPIF 152 (265)
T ss_pred CCCCCEEEEEeccHHH-------HhhHHHHHHHHHHcCCCEEEeCC--------CC--h--HHHHHHHHHHHHcCCcEEE
Confidence 3668888887665543 36788889999999999998752 11 1 1224678888899999965
Q ss_pred EEEeeccCCCCCCCccccCChhHHhhhccC-CCeEeecCCCCccc
Q 005715 326 VMAFHEYGANDSGDAWISLPQWVMEIGKGN-QDIFFTDREGRRNT 369 (681)
Q Consensus 326 VmSFHqCGGNVGD~~~IpLP~WV~e~g~~~-PDI~ytDr~G~rn~ 369 (681)
+.+= + +-+.++-.+.+.- .-|+|..+.|..-.
T Consensus 153 lvaP-----------t-t~~~rl~~i~~~a~GFiY~vs~~GvTG~ 185 (265)
T COG0159 153 LVAP-----------T-TPDERLKKIAEAASGFIYYVSRMGVTGA 185 (265)
T ss_pred EeCC-----------C-CCHHHHHHHHHhCCCcEEEEecccccCC
Confidence 5443 1 2345665554443 44999999876533
No 170
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=34.12 E-value=69 Score=32.00 Aligned_cols=49 Identities=14% Similarity=0.294 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEE
Q 005715 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (681)
Q Consensus 269 ~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvq 324 (681)
...++.-|+.++++|.+||++.. +..... +.+-..++-+.++++||++-
T Consensus 14 ~~~l~~~l~~~~~~G~~gvEi~~-~~~~~~------~~~~~~~l~~~l~~~gl~i~ 62 (274)
T COG1082 14 ELPLEEILRKAAELGFDGVELSP-GDLFPA------DYKELAELKELLADYGLEIT 62 (274)
T ss_pred CCCHHHHHHHHHHhCCCeEecCC-cccCCc------hhhhHHHHHHHHHHcCcEEE
Confidence 46788899999999999999987 222222 22238999999999999983
No 171
>PRK13753 dihydropteroate synthase; Provisional
Probab=34.10 E-value=5.4e+02 Score=27.95 Aligned_cols=59 Identities=14% Similarity=0.059 Sum_probs=42.9
Q ss_pred eeecCCccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc------cchHHHHHHHHHHHcCC
Q 005715 258 HVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY------AWSGYRELFNIIREFNL 321 (681)
Q Consensus 258 d~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Y------dWsgY~~l~~mvr~~GL 321 (681)
|..++++...+.+...+....|-+.|+|-|-|.- |+..|+-= +|.=...+++.+++.+.
T Consensus 13 DSFsDGg~~~~~d~a~~~a~~m~~~GAdIIDIGg-----eSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~ 77 (279)
T PRK13753 13 DSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGP-----AASHPDARPVSPADEIRRIAPLLDALSDQMH 77 (279)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECC-----CCCCCCCCcCCHHHHHHHHHHHHHHHHhCCC
Confidence 3455667777888888888889999999998863 55556532 57666677888887653
No 172
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=33.91 E-value=90 Score=31.62 Aligned_cols=57 Identities=30% Similarity=0.469 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeec
Q 005715 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHq 331 (681)
+.+++.+.+++||+ ++|.|.+-.=||.=....| ...-++++.-+-+.|..+ |++-|.
T Consensus 158 ~~~~i~~~i~~lr~-~~D~vIv~~H~G~e~~~~p----~~~~~~~A~~l~~~G~Dv--IiG~H~ 214 (239)
T smart00854 158 DREKILADIARARK-KADVVIVSLHWGVEYQYEP----TDEQRELAHALIDAGADV--VIGHHP 214 (239)
T ss_pred CHHHHHHHHHHHhc-cCCEEEEEecCccccCCCC----CHHHHHHHHHHHHcCCCE--EEcCCC
Confidence 46889999999998 7999999999997332223 223356666666789877 888883
No 173
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=33.88 E-value=1.1e+02 Score=31.04 Aligned_cols=52 Identities=10% Similarity=0.185 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcE
Q 005715 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (681)
Q Consensus 270 ~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKv 323 (681)
..++..|+.+.++|+++|.+ |.+-.....+..++=...+++-++++++||+|
T Consensus 10 ~~~~~~~~~~~~~G~~~vel--~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~l 61 (273)
T smart00518 10 GGLYKAFIEAVDIGARSFQL--FLGNPRSWKGVRLSEETAEKFKEALKENNIDV 61 (273)
T ss_pred CcHhHHHHHHHHcCCCEEEE--ECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 35788999999999999998 33322221122333345888999999999985
No 174
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=33.41 E-value=44 Score=36.10 Aligned_cols=58 Identities=16% Similarity=0.286 Sum_probs=40.3
Q ss_pred HHHHHHHHHHcCcceEE---Eeee-eeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEe
Q 005715 272 IRQEISHMKALNVDGVI---VNCW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (681)
Q Consensus 272 l~~~L~~LK~aGVdGV~---vDVW-WGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSF 329 (681)
.+..|++||++|++.+. +... --+...-.|++..|.-+.+.++.++++|+++-.-|=+
T Consensus 149 ~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi~~~sg~i~ 210 (351)
T TIGR03700 149 TEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGLKTNATMLY 210 (351)
T ss_pred HHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCCcceEEEe
Confidence 45679999999998775 1111 1112222366778899999999999999999444444
No 175
>PRK06256 biotin synthase; Validated
Probab=32.48 E-value=52 Score=34.86 Aligned_cols=46 Identities=11% Similarity=0.172 Sum_probs=35.2
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCc-------cccchHHHHHHHHHHHcCCcEEE
Q 005715 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQ-------KYAWSGYRELFNIIREFNLKVQV 325 (681)
Q Consensus 274 ~~L~~LK~aGVdGV~vDVWWGiVE~~~p~-------~YdWsgY~~l~~mvr~~GLKvqv 325 (681)
..|+.||++|++.|.+. +|. .+. ..+|..+.+.++.++++||++..
T Consensus 153 e~l~~LkeaG~~~v~~~-----lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~ 205 (336)
T PRK06256 153 EQAERLKEAGVDRYNHN-----LET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCS 205 (336)
T ss_pred HHHHHHHHhCCCEEecC-----Ccc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeecc
Confidence 56788999999999774 343 322 24788888999999999998743
No 176
>PRK02227 hypothetical protein; Provisional
Probab=32.34 E-value=52 Score=34.86 Aligned_cols=46 Identities=11% Similarity=-0.018 Sum_probs=36.5
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCC---CccccchHHHHHHHHHHHcCCcE
Q 005715 274 QEISHMKALNVDGVIVNCWWGIVEGWN---PQKYAWSGYRELFNIIREFNLKV 323 (681)
Q Consensus 274 ~~L~~LK~aGVdGV~vDVWWGiVE~~~---p~~YdWsgY~~l~~mvr~~GLKv 323 (681)
.-+..++++|++|+|+|-+ ++.+ -..+++....+.++++|++||+.
T Consensus 135 ~l~~~a~~aGf~g~MlDTa----~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~ 183 (238)
T PRK02227 135 SLPAIAADAGFDGAMLDTA----IKDGKSLFDHMDEEELAEFVAEARSHGLMS 183 (238)
T ss_pred HHHHHHHHcCCCEEEEecc----cCCCcchHhhCCHHHHHHHHHHHHHcccHh
Confidence 4567889999999999975 3333 23467788889999999999998
No 177
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=31.81 E-value=1.5e+02 Score=31.54 Aligned_cols=86 Identities=13% Similarity=0.141 Sum_probs=51.8
Q ss_pred HHHHHHHHcCcceEEEeee---eeeecc-CCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhHH
Q 005715 274 QEISHMKALNVDGVIVNCW---WGIVEG-WNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVM 349 (681)
Q Consensus 274 ~~L~~LK~aGVdGV~vDVW---WGiVE~-~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpLP~WV~ 349 (681)
++++..+++|++.|.+-+- +-+-+. ..-....+.-+.++++.+++.|+++++.++.=.|. ..+ -|..|.
T Consensus 78 ~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~------~r~-~~~~~~ 150 (280)
T cd07945 78 KSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNG------MRD-SPDYVF 150 (280)
T ss_pred HHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCC------CcC-CHHHHH
Confidence 4788899999999887762 111111 01223355667888999999999998888742232 233 466776
Q ss_pred hhhcc----CCC-eEeecCCCC
Q 005715 350 EIGKG----NQD-IFFTDREGR 366 (681)
Q Consensus 350 e~g~~----~PD-I~ytDr~G~ 366 (681)
+..+. -.| |.+.|--|.
T Consensus 151 ~~~~~~~~~G~~~i~l~DT~G~ 172 (280)
T cd07945 151 QLVDFLSDLPIKRIMLPDTLGI 172 (280)
T ss_pred HHHHHHHHcCCCEEEecCCCCC
Confidence 64322 122 555555553
No 178
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=31.65 E-value=98 Score=32.91 Aligned_cols=71 Identities=15% Similarity=0.183 Sum_probs=46.8
Q ss_pred HHHHHHHHH---HcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCC------CCccc
Q 005715 272 IRQEISHMK---ALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDS------GDAWI 342 (681)
Q Consensus 272 l~~~L~~LK---~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVG------D~~~I 342 (681)
++.++.+|| ++|++.+..-. -||-..|.+..+.+++.|+++-+|-.+=-+. |.. .-|.|
T Consensus 147 ~~~d~~~L~~Ki~aGA~f~iTQ~-----------~Fd~~~~~~f~~~~~~~gi~~PIi~GI~pi~-s~~~~~~~~~~~Gi 214 (281)
T TIGR00677 147 VELDLKYLKEKVDAGADFIITQL-----------FYDVDNFLKFVNDCRAIGIDCPIVPGIMPIN-NYASFLRRAKWSKT 214 (281)
T ss_pred HHHHHHHHHHHHHcCCCEeeccc-----------eecHHHHHHHHHHHHHcCCCCCEEeeccccC-CHHHHHHHHhcCCC
Confidence 344455554 49999887544 4788999999999999988875554432221 111 12458
Q ss_pred cCChhHHhhhcc
Q 005715 343 SLPQWVMEIGKG 354 (681)
Q Consensus 343 pLP~WV~e~g~~ 354 (681)
.+|.||.+.-++
T Consensus 215 ~vP~~l~~~l~~ 226 (281)
T TIGR00677 215 KIPQEIMSRLEP 226 (281)
T ss_pred CCCHHHHHHHHh
Confidence 899999986543
No 179
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=31.55 E-value=4.3e+02 Score=28.02 Aligned_cols=130 Identities=15% Similarity=0.140 Sum_probs=72.2
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHH------------------HHHHHHcCCcEEEEEEe
Q 005715 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYREL------------------FNIIREFNLKVQVVMAF 329 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l------------------~~mvr~~GLKvqvVmSF 329 (681)
+++.+...++.+++.|+++|.+.+-.- +++ ....|.-.+++ +..+.++|.+. +..
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p-~~~---~~~~~~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~---I~v 199 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTP-VLG---RRLTWDDLAWLRSQWKGPLILKGILTPEDALRAVDAGADG---IVV 199 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCC-CCC---CCCCHHHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCE---EEE
Confidence 567788888999999999998866421 121 11344322222 23344445444 334
Q ss_pred eccCCCCCCCccccCChhHHhhhccCC-CeEeecCCCCccc----cceecccCcccccCCCchhH--------HHHHHHH
Q 005715 330 HEYGANDSGDAWISLPQWVMEIGKGNQ-DIFFTDREGRRNT----ECLSWGVDKERVLNGRTGIE--------VYFDFMR 396 (681)
Q Consensus 330 HqCGGNVGD~~~IpLP~WV~e~g~~~P-DI~ytDr~G~rn~----E~LSlg~D~~pVl~GRTpiq--------~Y~DFmr 396 (681)
|.+||-..| ..++....+.++.+.-+ +|-..=.-|-++. ++|.+|+|-+-| ||--+. --.++++
T Consensus 200 ~~~gG~~~~-~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~i--g~~~l~~~~~~g~~~v~~~i~ 276 (299)
T cd02809 200 SNHGGRQLD-GAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLI--GRPFLYGLAAGGEAGVAHVLE 276 (299)
T ss_pred cCCCCCCCC-CCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE--cHHHHHHHHhcCHHHHHHHHH
Confidence 455665433 22333345555533332 4555544555555 788999997543 543332 2246778
Q ss_pred HHHHHHHhhhh
Q 005715 397 SFRTEFDDLFV 407 (681)
Q Consensus 397 SFr~~F~~~~g 407 (681)
.+++++...+.
T Consensus 277 ~l~~el~~~m~ 287 (299)
T cd02809 277 ILRDELERAMA 287 (299)
T ss_pred HHHHHHHHHHH
Confidence 88887777664
No 180
>PRK15108 biotin synthase; Provisional
Probab=31.45 E-value=75 Score=34.59 Aligned_cols=50 Identities=10% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCcceEEEeee--eeeeccCCCccccchHHHHHHHHHHHcCCcE
Q 005715 273 RQEISHMKALNVDGVIVNCW--WGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (681)
Q Consensus 273 ~~~L~~LK~aGVdGV~vDVW--WGiVE~~~p~~YdWsgY~~l~~mvr~~GLKv 323 (681)
+..|++||++|||.|.++.= -+.-..--+.. +|....+..+.+++.|+++
T Consensus 136 ~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~-~~~~rl~~i~~a~~~G~~v 187 (345)
T PRK15108 136 ESQAQRLANAGLDYYNHNLDTSPEFYGNIITTR-TYQERLDTLEKVRDAGIKV 187 (345)
T ss_pred HHHHHHHHHcCCCEEeeccccChHhcCCCCCCC-CHHHHHHHHHHHHHcCCce
No 181
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=31.14 E-value=87 Score=34.49 Aligned_cols=52 Identities=10% Similarity=-0.006 Sum_probs=40.9
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEE
Q 005715 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (681)
Q Consensus 274 ~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqv 325 (681)
-..+.+|.+|.|+|.+-|||+-=+...-..-......++.+-|++.||-+.+
T Consensus 110 ~sve~a~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlll 161 (340)
T PRK12858 110 WSVRRIKEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFL 161 (340)
T ss_pred ccHHHHHHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEE
Confidence 3456799999999999999993322111567888899999999999999844
No 182
>PF04187 DUF399: Protein of unknown function, DUF399; InterPro: IPR007314 No function is known for any member of this family.; PDB: 2G5G_X.
Probab=30.71 E-value=36 Score=34.62 Aligned_cols=20 Identities=35% Similarity=0.627 Sum_probs=15.8
Q ss_pred ccchHHHHHHHHHHHcCCcE
Q 005715 304 YAWSGYRELFNIIREFNLKV 323 (681)
Q Consensus 304 YdWsgY~~l~~mvr~~GLKv 323 (681)
|+|+.|+.|++.+++.||+|
T Consensus 86 ~~~~~Y~pl~~~Ar~~~ipv 105 (213)
T PF04187_consen 86 NDWALYRPLVEFARENGIPV 105 (213)
T ss_dssp --GGGTHHHHHHHHTSS--E
T ss_pred CchHHHHHHHHHHHHCCCCE
Confidence 58999999999999999998
No 183
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=30.45 E-value=43 Score=35.25 Aligned_cols=31 Identities=13% Similarity=0.317 Sum_probs=25.4
Q ss_pred CccccCHHHHHHHHHHHHHcCcceEEEeeeee
Q 005715 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWG 294 (681)
Q Consensus 263 ~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWG 294 (681)
+++|.-+..++.-.++|+ .|+..|++|||=|
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcR~vElD~wdg 53 (229)
T cd08627 23 GDQFSSESSLEAYARCLR-MGCRCIELDCWDG 53 (229)
T ss_pred CCccCCcccHHHHHHHHH-hCCCEEEEEeecC
Confidence 356777777887777777 9999999999965
No 184
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=30.32 E-value=1.3e+02 Score=32.64 Aligned_cols=63 Identities=24% Similarity=0.300 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChh
Q 005715 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQW 347 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpLP~W 347 (681)
+.+...+.|+.+|++|+.. +||. .|--+-= --..|.++.++.|+.|++.=.||. ....|.|
T Consensus 36 ~~~~~~~El~~~k~~Gg~t--------iVd~-T~~g~GR-d~~~l~~is~~tGv~II~~TG~y~---------~~~~p~~ 96 (308)
T PF02126_consen 36 DVEAAVAELKEFKAAGGRT--------IVDA-TPIGLGR-DVEALREISRRTGVNIIASTGFYK---------EPFYPEW 96 (308)
T ss_dssp HHHHHHHHHHHHHHTTEEE--------EEE---SGGGTB--HHHHHHHHHHHT-EEEEEEEE-S---------GGCSCHH
T ss_pred hHHHHHHHHHHHHHcCCCE--------EEec-CCcccCc-CHHHHHHHHHHhCCeEEEeCCCCc---------cccCChh
Confidence 7789999999999999876 4554 3322211 126788889999999955555552 2346788
Q ss_pred HH
Q 005715 348 VM 349 (681)
Q Consensus 348 V~ 349 (681)
+.
T Consensus 97 ~~ 98 (308)
T PF02126_consen 97 VR 98 (308)
T ss_dssp HH
T ss_pred hh
Confidence 76
No 185
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=30.30 E-value=1e+02 Score=33.03 Aligned_cols=56 Identities=23% Similarity=0.442 Sum_probs=39.0
Q ss_pred CccccCHHHHHHHHHHHHHcCcceEEEeeeee-eeccCCCccc-cch-----HHHHHHHHHHHcCCc
Q 005715 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWG-IVEGWNPQKY-AWS-----GYRELFNIIREFNLK 322 (681)
Q Consensus 263 ~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWG-iVE~~~p~~Y-dWs-----gY~~l~~mvr~~GLK 322 (681)
+++|.-...++.-.++|+ .|+..|++|||=| .-| |-.| ++. ..+++++.|+++..+
T Consensus 23 g~Ql~~~ss~~~y~~aL~-~GcR~vElD~w~g~~ge---pvV~Hg~tlts~i~f~dv~~~I~~~aF~ 85 (260)
T cd08597 23 EDQLRGPSSVEGYVRALQ-RGCRCVELDCWDGPNGE---PVIYHGHTLTSKISFRSVIEAINEYAFV 85 (260)
T ss_pred CCeecCccCHHHHHHHHH-hCCCEEEEEeEcCCCCC---EEEEeCCccccceEHHHHHHHHHHHhcc
Confidence 356666677777677775 9999999999944 112 2222 233 578999999998776
No 186
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=30.25 E-value=2e+02 Score=30.77 Aligned_cols=88 Identities=8% Similarity=0.151 Sum_probs=57.6
Q ss_pred ccCHHHHHHHHHHHHHc--CcceEEEee-eeeeeccCCCccccch-----HHHHHHHHHHHcCCcEEEEEEeeccCCCCC
Q 005715 266 LVDPELIRQEISHMKAL--NVDGVIVNC-WWGIVEGWNPQKYAWS-----GYRELFNIIREFNLKVQVVMAFHEYGANDS 337 (681)
Q Consensus 266 l~~~~~l~~~L~~LK~a--GVdGV~vDV-WWGiVE~~~p~~YdWs-----gY~~l~~mvr~~GLKvqvVmSFHqCGGNVG 337 (681)
..+.+.+..-++.+++. -+|.|.+|. ||+ ..+-+.|+|. --+++++-+++.|+|| |+..|-. |.
T Consensus 20 y~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~---~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv--~~~i~P~---v~ 91 (319)
T cd06591 20 YKTQEELLDVAKEYRKRGIPLDVIVQDWFYWP---KQGWGEWKFDPERFPDPKAMVRELHEMNAEL--MISIWPT---FG 91 (319)
T ss_pred CCCHHHHHHHHHHHHHhCCCccEEEEechhhc---CCCceeEEEChhhCCCHHHHHHHHHHCCCEE--EEEecCC---cC
Confidence 45788899999999987 679999996 553 1111256665 5778999999999999 4454411 11
Q ss_pred CCccccCChhHHhhhccCCCeEeecCCCCcc
Q 005715 338 GDAWISLPQWVMEIGKGNQDIFFTDREGRRN 368 (681)
Q Consensus 338 D~~~IpLP~WV~e~g~~~PDI~ytDr~G~rn 368 (681)
..-+. -+++++ .+.|+++..|...
T Consensus 92 ----~~~~~--y~e~~~-~g~~v~~~~g~~~ 115 (319)
T cd06591 92 ----PETEN--YKEMDE-KGYLIKTDRGPRV 115 (319)
T ss_pred ----CCChh--HHHHHH-CCEEEEcCCCCee
Confidence 11122 233333 4789999888643
No 187
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=30.12 E-value=1.3e+02 Score=33.27 Aligned_cols=61 Identities=16% Similarity=0.181 Sum_probs=47.2
Q ss_pred CccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccch-----HHHHHHHHHHHcCCcEEEEEEee
Q 005715 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS-----GYRELFNIIREFNLKVQVVMAFH 330 (681)
Q Consensus 263 ~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWs-----gY~~l~~mvr~~GLKvqvVmSFH 330 (681)
-|.+.+++++..--+.||++|.+.+...+| +..-.-|.|. +|+-|.+.+++.||.+ +-..|
T Consensus 100 PCsiEs~e~~~~~A~~lk~~ga~~~r~~~f-----KpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v--~tev~ 165 (335)
T PRK08673 100 PCSVESEEQILEIARAVKEAGAQILRGGAF-----KPRTSPYSFQGLGEEGLKLLAEAREETGLPI--VTEVM 165 (335)
T ss_pred cCccCCHHHHHHHHHHHHHhchhhccCcEe-----cCCCCCcccccccHHHHHHHHHHHHHcCCcE--EEeeC
Confidence 467889999999999999999997776666 2222234554 4999999999999999 55554
No 188
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=29.89 E-value=71 Score=33.88 Aligned_cols=89 Identities=11% Similarity=0.053 Sum_probs=52.0
Q ss_pred CCCccEEEEeeceeecCCccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEE
Q 005715 246 TPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (681)
Q Consensus 246 ~~~vpVyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqv 325 (681)
..+|+||-+-.|--+- .-...++.-|+.+|++|++.|+|.. +--...=.-..++++++++.||||.+
T Consensus 65 ~~gV~v~~GGtl~E~a-----~~q~~~~~yl~~~k~lGf~~IEiSd--------Gti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 65 SHGVYVYPGGTLFEVA-----YQQGKFDEYLEECKELGFDAIEISD--------GTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp CTT-EEEE-HHHHHHH-----HHTT-HHHHHHHHHHCT-SEEEE----------SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred HcCCeEeCCcHHHHHH-----HhcChHHHHHHHHHHcCCCEEEecC--------CceeCCHHHHHHHHHHHHHCCCEEee
Confidence 3567888776665442 1257899999999999999999853 22333445677899999999999854
Q ss_pred EEEeeccCCCCCCCccccCChhHHhh
Q 005715 326 VMAFHEYGANDSGDAWISLPQWVMEI 351 (681)
Q Consensus 326 VmSFHqCGGNVGD~~~IpLP~WV~e~ 351 (681)
=..-. +.+.+...++..|+..+
T Consensus 132 EvG~K----~~~~~~~~~~~~~i~~~ 153 (244)
T PF02679_consen 132 EVGKK----DPESDFSLDPEELIEQA 153 (244)
T ss_dssp EES-S----SHHHHTT--CCHHHHHH
T ss_pred cccCC----CchhcccCCHHHHHHHH
Confidence 43321 11112222366777654
No 189
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=29.57 E-value=2.4e+02 Score=29.77 Aligned_cols=110 Identities=16% Similarity=0.253 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc--cchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCC
Q 005715 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY--AWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLP 345 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Y--dWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpLP 345 (681)
|...+..+|+++.++|+|-+++||= +|+| |.+-=-.+++.+++. -++ .+..| -.|.-|
T Consensus 14 D~~~l~~el~~~~~agad~iH~DVM--------DghFVPNiTfGp~~v~~l~~~-t~~--p~DvH---------LMV~~p 73 (220)
T COG0036 14 DFARLGEELKALEAAGADLIHIDVM--------DGHFVPNITFGPPVVKALRKI-TDL--PLDVH---------LMVENP 73 (220)
T ss_pred CHhHHHHHHHHHHHcCCCEEEEecc--------CCCcCCCcccCHHHHHHHhhc-CCC--ceEEE---------EecCCH
Confidence 6789999999999999999999984 4444 344334556666662 122 45556 233444
Q ss_pred h-hHHhhhccCCC-eEeecCCCCcccccee----cccCcccccCCCchhHHHHHHHHH
Q 005715 346 Q-WVMEIGKGNQD-IFFTDREGRRNTECLS----WGVDKERVLNGRTGIEVYFDFMRS 397 (681)
Q Consensus 346 ~-WV~e~g~~~PD-I~ytDr~G~rn~E~LS----lg~D~~pVl~GRTpiq~Y~DFmrS 397 (681)
. |+-.-.+.-+| |.|-=+......+.|+ .|+--=-+|+--||++.|+.|+..
T Consensus 74 ~~~i~~fa~agad~It~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~ 131 (220)
T COG0036 74 DRYIEAFAKAGADIITFHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDD 131 (220)
T ss_pred HHHHHHHHHhCCCEEEEEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhh
Confidence 4 66665666677 4444443433334443 344433457889999999877653
No 190
>PLN02540 methylenetetrahydrofolate reductase
Probab=29.46 E-value=1.2e+02 Score=35.89 Aligned_cols=73 Identities=12% Similarity=0.144 Sum_probs=48.8
Q ss_pred HHHHHHHHHH---HcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCC-----CCCCccc
Q 005715 271 LIRQEISHMK---ALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGAN-----DSGDAWI 342 (681)
Q Consensus 271 ~l~~~L~~LK---~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGN-----VGD~~~I 342 (681)
.++.+|..|| ++|++.+..-. -||-..|.+.++.||+.|+++-++...--+..- .-.-|.|
T Consensus 154 ~~~~dl~~Lk~KvdAGAdFiITQl-----------fFD~d~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~Gi 222 (565)
T PLN02540 154 AYQKDLAYLKEKVDAGADLIITQL-----------FYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKT 222 (565)
T ss_pred ChHHHHHHHHHHHHcCCCEEeecc-----------ccCHHHHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccCC
Confidence 3556666666 59999987543 589999999999999999766444333211100 0012558
Q ss_pred cCChhHHhhhcc
Q 005715 343 SLPQWVMEIGKG 354 (681)
Q Consensus 343 pLP~WV~e~g~~ 354 (681)
.+|.|+.+.-+.
T Consensus 223 ~IP~~i~~rLe~ 234 (565)
T PLN02540 223 KIPAEITAALEP 234 (565)
T ss_pred cCCHHHHHHHHh
Confidence 899999986443
No 191
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=29.31 E-value=70 Score=39.56 Aligned_cols=25 Identities=12% Similarity=0.116 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCcceEEE-eee-eeee
Q 005715 272 IRQEISHMKALNVDGVIV-NCW-WGIV 296 (681)
Q Consensus 272 l~~~L~~LK~aGVdGV~v-DVW-WGiV 296 (681)
.-.-|+.||++||..|++ +|+ ++-|
T Consensus 288 gi~hLk~L~eLGVThVeLLPv~df~tv 314 (898)
T TIGR02103 288 GVQHLKKLADAGVTHLHLLPTFDIATV 314 (898)
T ss_pred hhHHHHHHHhCCCcEEEEcChhhcCcc
Confidence 446788888999999985 566 6544
No 192
>TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. This model describes the cobalamin-independent methionine synthase. A family of uncharacterized archaeal proteins is homologous to the C-terminal region of this family. That family is excluded from this model but, along with this family, belongs to pfam model pfam01717.
Probab=28.93 E-value=1.5e+02 Score=35.90 Aligned_cols=83 Identities=14% Similarity=0.170 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeccCCCccccchHHHHH-HHHHHHc--CCcEEEEEEeeccCCCCCCCccccCC
Q 005715 270 ELIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWSGYREL-FNIIREF--NLKVQVVMAFHEYGANDSGDAWISLP 345 (681)
Q Consensus 270 ~~l~~~L~~LK~aGVdGV~vDVW-WGiVE~~~p~~YdWsgY~~l-~~mvr~~--GLKvqvVmSFHqCGGNVGD~~~IpLP 345 (681)
.++...++.|.++|++-|-+|.= |- |.-.-.+-+|..|.+. .+..+.+ |++--.-+.+|-|-||+++- =
T Consensus 575 ~a~~~ev~~L~~aG~~~IQIDEPaL~--~~l~~~~~~~~~~l~~a~~~~~~~~~~v~~~~~I~~H~C~g~~~~i-----~ 647 (750)
T TIGR01371 575 LAIRDEVLDLEEAGIKIIQIDEPALR--EGLPLRKSDWPEYLDWAVEAFRLATSGVKDETQIHTHMCYSEFNEI-----I 647 (750)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCchhh--hcCCccchhHHHHHHHHHHHHHHHHhCCCCCCEEEEEEECCCcHHH-----H
Confidence 36677889999999999999976 53 3211122355555333 2333332 54311234889999987621 1
Q ss_pred hhHHhhhccCCCeEeec
Q 005715 346 QWVMEIGKGNQDIFFTD 362 (681)
Q Consensus 346 ~WV~e~g~~~PDI~ytD 362 (681)
.++ .+.+-|.+..|
T Consensus 648 ~~l---~~l~vD~i~lE 661 (750)
T TIGR01371 648 ESI---ADLDADVISIE 661 (750)
T ss_pred HHH---HhCCCCEEEEE
Confidence 233 25666766665
No 193
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=28.56 E-value=2.6e+02 Score=29.92 Aligned_cols=83 Identities=13% Similarity=0.141 Sum_probs=49.7
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCccc------cchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCC--
Q 005715 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKY------AWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLP-- 345 (681)
Q Consensus 274 ~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Y------dWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpLP-- 345 (681)
+++++..++|++.|.+-+ ..-|...-.++ -+.-+.++++++++.||++++.+ .|....++.
T Consensus 78 ~die~A~~~g~~~v~i~~--s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~---------ed~~r~d~~~~ 146 (279)
T cd07947 78 EDLKLVKEMGLKETGILM--SVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL---------EDITRADIYGF 146 (279)
T ss_pred HHHHHHHHcCcCEEEEEE--cCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE---------EcccCCCcccc
Confidence 455666678999888744 44343333334 34558888899999999986666 233323333
Q ss_pred --hhHHhhhc----cCCC--eEeecCCCCc
Q 005715 346 --QWVMEIGK----GNQD--IFFTDREGRR 367 (681)
Q Consensus 346 --~WV~e~g~----~~PD--I~ytDr~G~r 367 (681)
.|+.+..+ .-.| |-+.|--|.-
T Consensus 147 v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a 176 (279)
T cd07947 147 VLPFVNKLMKLSKESGIPVKIRLCDTLGYG 176 (279)
T ss_pred hHHHHHHHHHHHHHCCCCEEEEeccCCCcC
Confidence 47777544 3334 3356665544
No 194
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=28.52 E-value=1e+02 Score=31.80 Aligned_cols=56 Identities=11% Similarity=-0.042 Sum_probs=36.5
Q ss_pred hHHHHHHHhhcCcEEEEeee---cCCCCCCCCCCChHHHHHHHHHHHHhcCCcccccccc
Q 005715 561 YAPVFEVLKKHSVTMKFVCA---VPSLQDQEALADPEGLSWQVLNLAWDRGLAVAGENAL 617 (681)
Q Consensus 561 Y~pIa~mfarh~v~l~FTCl---M~d~e~~~a~s~Pe~Lv~QV~~aA~~~Gv~laGENAL 617 (681)
...+++.|-+.|+...++|+ ..|.+. -...--++++..+...+++.||..+|||.-
T Consensus 123 ~~~ll~e~i~~Gf~aiIv~V~~~~L~~~~-LGr~l~~e~i~~L~~~~~~~gvdp~GE~GE 181 (218)
T PF01902_consen 123 REELLREFIESGFEAIIVKVDADGLDESF-LGRELDRELIEELPELNKKYGVDPCGEGGE 181 (218)
T ss_dssp HHHHHHHHHHTT-EEEEEEEESTT--GGG-TT-B--HHHHHHHHHHHHHH---TT-TTTT
T ss_pred HHHHHHHHHHCCCeEEEEEEeccCCChHH-CCCCccHHHHHHHHHHHhhcCccccCCCee
Confidence 66788888889999999999 223322 111223689999999999999999999974
No 195
>TIGR03586 PseI pseudaminic acid synthase.
Probab=28.38 E-value=1.3e+02 Score=32.93 Aligned_cols=70 Identities=20% Similarity=0.283 Sum_probs=44.7
Q ss_pred cEEEEeeceeecCCccccCHHHHHHHHHHHHHcCcceEEEeeee--eeeccCCCc---------------------cccc
Q 005715 250 PVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWW--GIVEGWNPQ---------------------KYAW 306 (681)
Q Consensus 250 pVyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWW--GiVE~~~p~---------------------~YdW 306 (681)
|+||-+-+++ |-+| +.+...+-.++.|++|+|.|-.--|= .++.+..+. .+.+
T Consensus 1 ~~~iIAEiG~-NH~G---~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~ 76 (327)
T TIGR03586 1 PPFIIAELSA-NHNG---SLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPW 76 (327)
T ss_pred CCEEEEEECC-CCCC---hHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCH
Confidence 4566665553 3333 44666667788899999998877651 121111111 2236
Q ss_pred hHHHHHHHHHHHcCCcE
Q 005715 307 SGYRELFNIIREFNLKV 323 (681)
Q Consensus 307 sgY~~l~~mvr~~GLKv 323 (681)
.+|.+|++.+++.||.+
T Consensus 77 e~~~~L~~~~~~~Gi~~ 93 (327)
T TIGR03586 77 EWHKELFERAKELGLTI 93 (327)
T ss_pred HHHHHHHHHHHHhCCcE
Confidence 77889999999999997
No 196
>PRK06233 hypothetical protein; Provisional
Probab=28.28 E-value=1.1e+02 Score=33.64 Aligned_cols=67 Identities=16% Similarity=0.216 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eee-eccCC---CccccchHHHHH-------HHHHHHcCCcEEEEEEeeccCCCCC
Q 005715 270 ELIRQEISHMKALNVDGVIVNCW-WGI-VEGWN---PQKYAWSGYREL-------FNIIREFNLKVQVVMAFHEYGANDS 337 (681)
Q Consensus 270 ~~l~~~L~~LK~aGVdGV~vDVW-WGi-VE~~~---p~~YdWsgY~~l-------~~mvr~~GLKvqvVmSFHqCGGNVG 337 (681)
+++++.+++|.++|++.|-+|.= |+. .+... ..--.|..|.++ ++.+-+ |+.--..+++|-|-||..
T Consensus 171 ~a~~~Ei~~L~~aG~~~IQiDeP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~-~~p~d~~i~~H~C~Gn~~ 249 (372)
T PRK06233 171 QAYHDTIQHFYDLGARYIQLDDTTWAYLISKLNDTENDPKEHQKYVKLAEDAVYVINKALA-DLPEDLTVTTHICRGNFK 249 (372)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCHHhhhccccccccchhhhhhHHHHHHHHHHHHHHHHh-CCCcCCEEEEEeeCCCCC
Confidence 46778889999999999999975 763 22100 010123334333 322222 553344679999988874
No 197
>PTZ00445 p36-lilke protein; Provisional
Probab=28.06 E-value=1.4e+02 Score=31.56 Aligned_cols=59 Identities=8% Similarity=0.074 Sum_probs=47.6
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccch------------HHHHHHHHHHHcCCcE
Q 005715 265 QLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS------------GYRELFNIIREFNLKV 323 (681)
Q Consensus 265 ~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWs------------gY~~l~~mvr~~GLKv 323 (681)
.++..+....=.+.||+.||..|.+|.==-+|..++.|..++. ..+.++..+++.|++|
T Consensus 24 ~~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v 94 (219)
T PTZ00445 24 HLNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKI 94 (219)
T ss_pred cCCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeE
Confidence 3566677777788899999999999986677776666666664 4888999999999999
No 198
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=27.88 E-value=50 Score=34.74 Aligned_cols=57 Identities=16% Similarity=0.300 Sum_probs=35.5
Q ss_pred CccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc-cc-----hHHHHHHHHHHHcCCc
Q 005715 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY-AW-----SGYRELFNIIREFNLK 322 (681)
Q Consensus 263 ~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Y-dW-----sgY~~l~~mvr~~GLK 322 (681)
+++|..+..+++-.++|+ .|+..|++|||=|- ...|-.| ++ =..+++++.|+++..+
T Consensus 23 g~Ql~~ess~eay~~AL~-~GcR~vElDvwdg~--dgePvV~HG~tlts~i~f~dv~~~I~~~aF~ 85 (229)
T cd08592 23 GDQLSSESSLEAYARCLR-MGCRCIELDCWDGP--DGMPIIYHGHTLTSKIKFMDVLKTIKEHAFV 85 (229)
T ss_pred CCccCCccCHHHHHHHHH-hCCCEEEEEeecCC--CCCEEEEeCCcCCCCcCHHHHHHHHHHHhcc
Confidence 356777777777777776 99999999999552 1112211 11 2356666666666543
No 199
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=27.70 E-value=1.7e+02 Score=29.85 Aligned_cols=52 Identities=10% Similarity=-0.097 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHc-CCcE
Q 005715 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREF-NLKV 323 (681)
Q Consensus 270 ~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~-GLKv 323 (681)
..|+..|+.+|++|+++|.+.+=+..-.. .+. .+=...+++.++++++ ++.+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~i 62 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWL-SRP-LKKERAEKFKAIAEEGPSICL 62 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccC-CCC-CCHHHHHHHHHHHHHcCCCcE
Confidence 56889999999999999998763211000 000 0115788889999999 6665
No 200
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=27.68 E-value=97 Score=31.96 Aligned_cols=110 Identities=23% Similarity=0.277 Sum_probs=61.9
Q ss_pred EEEeee--eeeeccCCCc--cccchHHHH----HHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhHHhhhccCCCe
Q 005715 287 VIVNCW--WGIVEGWNPQ--KYAWSGYRE----LFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDI 358 (681)
Q Consensus 287 V~vDVW--WGiVE~~~p~--~YdWsgY~~----l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpLP~WV~e~g~~~PDI 358 (681)
+|+++- ||+||- .+. +.-=.-+++ .+.-|.+.+++ +|+-+|..==. .+....-||.||.++ -+||+
T Consensus 39 ~Mle~A~k~glve~-rD~~Rklp~e~Q~~lq~~Aa~rI~~~~~~--iivDtH~~IkT-P~GylpgLP~~Vl~~--l~pd~ 112 (189)
T COG2019 39 LMLEIAKKKGLVEH-RDEMRKLPLENQRELQAEAAKRIAEMALE--IIVDTHATIKT-PAGYLPGLPSWVLEE--LNPDV 112 (189)
T ss_pred HHHHHHHHhCCccc-HHHHhcCCHHHHHHHHHHHHHHHHHhhhc--eEEeccceecC-CCccCCCCcHHHHHh--cCCCE
Confidence 455555 888885 221 111222222 33445555666 59999964322 223456699999985 78897
Q ss_pred EeecCC------------CCccccceecccCcccccCCCchhHHHHHHHHHHHHHHHhhhhccceEEE
Q 005715 359 FFTDRE------------GRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAV 414 (681)
Q Consensus 359 ~ytDr~------------G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g~~vI~eI 414 (681)
|+.=+. -+|..++=|. --++.-.++-|.++-+.+-++|+ ++.=|
T Consensus 113 ivllEaDp~~Il~RR~~D~~r~Rd~es~-----------e~i~eHqe~nR~aA~a~A~~~ga-tVkIV 168 (189)
T COG2019 113 IVLLEADPEEILERRLRDSRRDRDVESV-----------EEIREHQEMNRAAAMAYAILLGA-TVKIV 168 (189)
T ss_pred EEEEeCCHHHHHHHHhcccccccccccH-----------HHHHHHHHHHHHHHHHHHHHhCC-eEEEE
Confidence 763222 1222222221 22667777888888888888874 54433
No 201
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=27.45 E-value=2.8e+02 Score=29.26 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=0.0
Q ss_pred CCCccEEEEeeceeecCCccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc---cchHHHHHHHHHHHcCCc
Q 005715 246 TPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---AWSGYRELFNIIREFNLK 322 (681)
Q Consensus 246 ~~~vpVyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Y---dWsgY~~l~~mvr~~GLK 322 (681)
...+||+|..-..+ +.--+..+..+++|+|+||+ -|--| +-.+..+.|+.+.++ ..
T Consensus 72 ~g~~pvi~gv~~~t----------~~ai~~a~~a~~~Gadav~~----------~pP~y~~~s~~~i~~~f~~v~~a-~~ 130 (296)
T TIGR03249 72 KGKVPVYTGVGGNT----------SDAIEIARLAEKAGADGYLL----------LPPYLINGEQEGLYAHVEAVCES-TD 130 (296)
T ss_pred CCCCcEEEecCccH----------HHHHHHHHHHHHhCCCEEEE----------CCCCCCCCCHHHHHHHHHHHHhc-cC
Q ss_pred EEEEEEeeccCCCCCCCccccCChhHHhhhccCCC-eEeecCCCCccc--cceecccCcccccCC
Q 005715 323 VQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREGRRNT--ECLSWGVDKERVLNG 384 (681)
Q Consensus 323 vqvVmSFHqCGGNVGD~~~IpLP~WV~e~g~~~PD-I~ytDr~G~rn~--E~LSlg~D~~pVl~G 384 (681)
+ +||-+|.+| ..++ |.=+.+..+++|. +-++|-+|.... +++...-|+..||.|
T Consensus 131 ~-pvilYn~~g------~~l~-~~~~~~La~~~~nvvgiKds~~d~~~~~~~~~~~~~~~~v~~G 187 (296)
T TIGR03249 131 L-GVIVYQRDN------AVLN-ADTLERLADRCPNLVGFKDGIGDMEQMIEITQRLGDRLGYLGG 187 (296)
T ss_pred C-CEEEEeCCC------CCCC-HHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHHHcCCCeEEEeC
No 202
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=27.39 E-value=1.5e+02 Score=31.75 Aligned_cols=60 Identities=12% Similarity=0.272 Sum_probs=43.0
Q ss_pred HHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEe-------------eccCCCCCCCccc
Q 005715 276 ISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF-------------HEYGANDSGDAWI 342 (681)
Q Consensus 276 L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSF-------------HqCGGNVGD~~~I 342 (681)
|++=-++|++.+..-. -||-..|.++.+.+++.|+.+-++... +-|| |
T Consensus 169 Lk~K~~aGA~~~iTQ~-----------~Fd~~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~G--------v 229 (296)
T PRK09432 169 LKRKVDAGANRAITQF-----------FFDVESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTN--------V 229 (296)
T ss_pred HHHHHHcCCCeeeccc-----------ccchHHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccC--------C
Confidence 4444469998776433 478999999999999999766444332 2344 7
Q ss_pred cCChhHHhhhcc
Q 005715 343 SLPQWVMEIGKG 354 (681)
Q Consensus 343 pLP~WV~e~g~~ 354 (681)
.+|.|+.+.-++
T Consensus 230 ~vP~~l~~~l~~ 241 (296)
T PRK09432 230 RIPAWMAKMFDG 241 (296)
T ss_pred CCCHHHHHHHHh
Confidence 899999986555
No 203
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=27.31 E-value=54 Score=40.30 Aligned_cols=67 Identities=15% Similarity=0.328 Sum_probs=47.4
Q ss_pred ccCHHHHHHHHHHH-----HHcC---cceEEEeeeeeeeccCCCccc---cchHHH---HHHHHHHHcCCcEEEEEEeec
Q 005715 266 LVDPELIRQEISHM-----KALN---VDGVIVNCWWGIVEGWNPQKY---AWSGYR---ELFNIIREFNLKVQVVMAFHE 331 (681)
Q Consensus 266 l~~~~~l~~~L~~L-----K~aG---VdGV~vDVWWGiVE~~~p~~Y---dWsgY~---~l~~mvr~~GLKvqvVmSFHq 331 (681)
|++...+-.+|-.| -.+| +.-||+. .--+..++-| +|.-|+ .|+++++++|.+++ =||.
T Consensus 532 L~na~~vm~~ll~l~~yR~~l~~~~n~QEVMlG----YSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~Lr---lFHG 604 (910)
T COG2352 532 LDNAPDVMTQLLNLPLYRALLAGRGNVQEVMLG----YSDSNKDGGYLAANWALYKAQLALVELCEKAGVELR---LFHG 604 (910)
T ss_pred HhccHHHHHHHHcChHHHHHHcCCCCceEEEec----ccccccccchhhhHHHHHHHHHHHHHHHHHhCceEE---EEcc
Confidence 55556665555333 2234 7788874 4444556655 799886 58999999999985 4999
Q ss_pred cCCCCCCC
Q 005715 332 YGANDSGD 339 (681)
Q Consensus 332 CGGNVGD~ 339 (681)
-||.||-.
T Consensus 605 RGGtVGRG 612 (910)
T COG2352 605 RGGSVGRG 612 (910)
T ss_pred CCCCCCCC
Confidence 99999875
No 204
>PRK12677 xylose isomerase; Provisional
Probab=27.24 E-value=1.3e+02 Score=33.37 Aligned_cols=49 Identities=14% Similarity=0.162 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHcCcceEEEee---e-eeeeccCCCccccchHHHHHHHHHHHcCCcEE
Q 005715 271 LIRQEISHMKALNVDGVIVNC---W-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (681)
Q Consensus 271 ~l~~~L~~LK~aGVdGV~vDV---W-WGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvq 324 (681)
.++.-+.+++++|+++|++.. | |+.-.. ..+ ...+++-++++++||+|.
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~----~~~-~~~~~lk~~l~~~GL~v~ 84 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDA----ERD-RIIKRFKKALDETGLVVP 84 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChh----hhH-HHHHHHHHHHHHcCCeeE
Confidence 477889999999999998831 2 322211 011 247889999999999983
No 205
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=27.06 E-value=2e+02 Score=30.74 Aligned_cols=66 Identities=21% Similarity=0.186 Sum_probs=49.0
Q ss_pred CccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEee
Q 005715 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (681)
Q Consensus 263 ~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFH 330 (681)
=|.+..++.+..--+.+|++|+..+.-..|==..-+.+-+-....+++.|.+.+++.||.+ +-..|
T Consensus 22 PC~vEs~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~--~Tev~ 87 (250)
T PRK13397 22 PCSIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLS--VSEIM 87 (250)
T ss_pred cCccCCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCE--EEeeC
Confidence 3678899999999999999999999998885111111112223468999999999999998 54554
No 206
>PRK00957 methionine synthase; Provisional
Probab=27.03 E-value=2.3e+02 Score=29.87 Aligned_cols=80 Identities=20% Similarity=0.219 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhH
Q 005715 270 ELIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWV 348 (681)
Q Consensus 270 ~~l~~~L~~LK~aGVdGV~vDVW-WGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpLP~WV 348 (681)
+.+...+++|+++|++.|.+|.= |.. +-.++....+.++.+.+ ++++ ....|-|| |.. |.|
T Consensus 144 ~~~~~~i~~l~~~G~~~IqiDEP~l~~------~~~~~~~~~~~~~~~~~-~i~~--~v~lH~CG-~~~-------~i~- 205 (305)
T PRK00957 144 RALRKEAEALEKAGVAMIQIDEPILST------GAYDLEVAKKAIDIITK-GLNV--PVAMHVCG-DVS-------NII- 205 (305)
T ss_pred HHHHHHHHHHHHcCCCEEEecChhhhc------CCchHHHHHHHHHHHHH-hhCC--ceEEEECC-CcH-------HHH-
Confidence 56778889999999999999863 553 12234444555554443 3344 34679995 221 212
Q ss_pred HhhhccCCCeEeecCCCCc
Q 005715 349 MEIGKGNQDIFFTDREGRR 367 (681)
Q Consensus 349 ~e~g~~~PDI~ytDr~G~r 367 (681)
-...+.+-|.++.|-.|..
T Consensus 206 ~~l~~~~vd~i~ld~~~~~ 224 (305)
T PRK00957 206 DDLLKFNVDILDHEFASNK 224 (305)
T ss_pred HHHHhCCCCEEEEeecCCC
Confidence 2233567788888876553
No 207
>PF12868 DUF3824: Domain of unknwon function (DUF3824); InterPro: IPR024436 This repeating domain is proline-rich but its function is unknown.
Probab=26.94 E-value=18 Score=35.15 Aligned_cols=9 Identities=44% Similarity=0.745 Sum_probs=3.4
Q ss_pred HHHHhHHHH
Q 005715 73 EKERTKLRE 81 (681)
Q Consensus 73 e~e~~~~re 81 (681)
|||+.+.|+
T Consensus 36 erer~r~r~ 44 (137)
T PF12868_consen 36 ERERERRRH 44 (137)
T ss_pred hhccccccc
Confidence 333333333
No 208
>COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=26.85 E-value=1.5e+02 Score=32.63 Aligned_cols=64 Identities=8% Similarity=-0.020 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCcceEEEee-eeeeeccCCCccccchHHHHHHH----H-HHHcCCcEEEEEEeeccCCCCCCC
Q 005715 270 ELIRQEISHMKALNVDGVIVNC-WWGIVEGWNPQKYAWSGYRELFN----I-IREFNLKVQVVMAFHEYGANDSGD 339 (681)
Q Consensus 270 ~~l~~~L~~LK~aGVdGV~vDV-WWGiVE~~~p~~YdWsgY~~l~~----m-vr~~GLKvqvVmSFHqCGGNVGD~ 339 (681)
.++++.++.|+.+||.-|-+|. -|+.-.+... |..|.+.+. . ++..|-++ -+++|-|.|+..+.
T Consensus 158 ~al~~ev~~l~~agi~~iQiDEpal~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~d~--~i~~HiCy~e~~~~ 227 (330)
T COG0620 158 LALRDEVKDLEDAGIKIIQIDEPALREGLPLRR----DDDYLEWAVEAINLAAAGVGADT--QIHLHICYSEFNDI 227 (330)
T ss_pred HHHHHHHHHHHHcCCCEEeechhhhhcCCcccc----chHHHHHHHHHHHHHHhcCCCCc--EEEEEEECCcccch
Confidence 5788889999999999999999 4776654222 234443332 2 23345555 56778899866544
No 209
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=26.80 E-value=2.2e+02 Score=27.37 Aligned_cols=69 Identities=14% Similarity=0.151 Sum_probs=39.7
Q ss_pred CCccEEEEeeceeecCCc-cccC---HHHH-HHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHc
Q 005715 247 PYIPVYVMLANHVINNFC-QLVD---PELI-RQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREF 319 (681)
Q Consensus 247 ~~vpVyVMLPLd~V~~~~-~l~~---~~~l-~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~ 319 (681)
++++|.+++--..-.... .+.+ .+++ ++-++.++..|.|||.+|.-|...+.. -++..|.++++.+++.
T Consensus 63 ~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~----~~~~~~~~ll~~lr~~ 136 (210)
T cd00598 63 PGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADN----SDRENFITLLRELRSA 136 (210)
T ss_pred CCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCc----cHHHHHHHHHHHHHHH
Confidence 566666666433211100 1222 2333 445567788999999999655433321 2467787777777764
No 210
>PLN02433 uroporphyrinogen decarboxylase
Probab=26.67 E-value=95 Score=33.43 Aligned_cols=77 Identities=10% Similarity=0.103 Sum_probs=47.6
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCCcccc---chHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhHHh
Q 005715 274 QEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVME 350 (681)
Q Consensus 274 ~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Yd---WsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpLP~WV~e 350 (681)
.-+++..++|++.|.+.-=|+-+ -+|.+|+ |-+.+++++-+++.+-.+ -...|.||.. ++-.++.
T Consensus 183 ~~~~~~ieaGa~~i~i~d~~~~~--lsp~~f~ef~~P~~k~i~~~i~~~~~~~--~~ilh~cG~~-------~~~~~~~- 250 (345)
T PLN02433 183 EYVDYQIDAGAQVVQIFDSWAGH--LSPVDFEEFSKPYLEKIVDEVKARHPDV--PLILYANGSG-------GLLERLA- 250 (345)
T ss_pred HHHHHHHHcCCCEEEEecCcccc--CCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEEeCCCH-------HHHHHHH-
Confidence 34455667999999665446543 3567776 999999999999862222 2345889831 2333444
Q ss_pred hhccCCCeEeecCC
Q 005715 351 IGKGNQDIFFTDRE 364 (681)
Q Consensus 351 ~g~~~PDI~ytDr~ 364 (681)
+...|++-.|..
T Consensus 251 --~~~~~~i~~d~~ 262 (345)
T PLN02433 251 --GTGVDVIGLDWT 262 (345)
T ss_pred --hcCCCEEEcCCC
Confidence 334466665554
No 211
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=26.64 E-value=1.8e+02 Score=29.37 Aligned_cols=58 Identities=29% Similarity=0.450 Sum_probs=42.9
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeec
Q 005715 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHE 331 (681)
Q Consensus 267 ~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHq 331 (681)
.+.+.+.+.+++||+. +|-|.+-+=||.-....|. ..-+++++.+-+.|..+ |+.-|.
T Consensus 159 ~~~~~~~~~i~~lr~~-~D~vIv~~H~G~e~~~~p~----~~~~~la~~l~~~G~D~--IiG~H~ 216 (239)
T cd07381 159 LDLERIAADIAEAKKK-ADIVIVSLHWGVEYSYYPT----PEQRELARALIDAGADL--VIGHHP 216 (239)
T ss_pred cCHHHHHHHHHHHhhc-CCEEEEEecCcccCCCCCC----HHHHHHHHHHHHCCCCE--EEcCCC
Confidence 3568899999999998 9999999999973322222 23456666666789887 888883
No 212
>PRK12568 glycogen branching enzyme; Provisional
Probab=26.58 E-value=1.5e+02 Score=36.03 Aligned_cols=59 Identities=15% Similarity=0.238 Sum_probs=40.5
Q ss_pred ccCHHHHHHH-HHHHHHcCcceEEEeeeeeeeccCCCccccc-----------------hHHHHHHHHHHHcCCcEEEEE
Q 005715 266 LVDPELIRQE-ISHMKALNVDGVIVNCWWGIVEGWNPQKYAW-----------------SGYRELFNIIREFNLKVQVVM 327 (681)
Q Consensus 266 l~~~~~l~~~-L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdW-----------------sgY~~l~~mvr~~GLKvqvVm 327 (681)
.-+.+.+... |..||++||+.|.+-= +.|. |....| ..++++++.+++.||+|..=+
T Consensus 265 ~~~~~~la~~ll~ylk~LGvt~I~LmP---i~e~--~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~ 339 (730)
T PRK12568 265 PLDWPTLAEQLIPYVQQLGFTHIELLP---ITEH--PFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDW 339 (730)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECc---cccC--CCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3466777777 5999999999997632 1221 222223 358999999999999994444
Q ss_pred Ee
Q 005715 328 AF 329 (681)
Q Consensus 328 SF 329 (681)
-+
T Consensus 340 V~ 341 (730)
T PRK12568 340 VS 341 (730)
T ss_pred cc
Confidence 44
No 213
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=26.53 E-value=2.4e+02 Score=29.43 Aligned_cols=59 Identities=12% Similarity=0.078 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeccCCCccccchHHHHHHHHHHH-cCCcEEEEEEeeccCC
Q 005715 270 ELIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWSGYRELFNIIRE-FNLKVQVVMAFHEYGA 334 (681)
Q Consensus 270 ~~l~~~L~~LK~aGVdGV~vDVW-WGiVE~~~p~~YdWsgY~~l~~mvr~-~GLKvqvVmSFHqCGG 334 (681)
+.....+++|+++|++.|.+|.= |...-. + ..++...++++.+.+.+ .|-+ ...|-||+
T Consensus 151 ~~~~~~~~~l~~~G~~~iqidEP~l~~~~~-s-~~~~~~~~~~~~~~~~~~~~~~----~~lHic~~ 211 (321)
T cd03310 151 EFLREQVKELKNRGIVVVQIDEPSLGAVGA-G-AFEDLEIVDAALEEVSLKSGGD----VEVHLCAP 211 (321)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCCccccccc-c-ccchHHHHHHHHHHHhhccCCc----eEEEECCC
Confidence 45677889999999999999874 554432 1 45788888888888876 3333 24688986
No 214
>PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=26.18 E-value=1.2e+02 Score=33.33 Aligned_cols=67 Identities=10% Similarity=0.081 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeee-ccC-----CCcccc----chHHHHHHHHHHHcCCcEEEEEEeeccCCCCC
Q 005715 270 ELIRQEISHMKALNVDGVIVNCW-WGIV-EGW-----NPQKYA----WSGYRELFNIIREFNLKVQVVMAFHEYGANDS 337 (681)
Q Consensus 270 ~~l~~~L~~LK~aGVdGV~vDVW-WGiV-E~~-----~p~~Yd----WsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVG 337 (681)
+++++.+++|.++|++.|-+|.= |+.. ... .....+ =..|.++++.+-+ |+.--..+++|-|-||..
T Consensus 170 ~al~~Ei~~L~~aG~~~IQiDep~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~n~~~~-~~p~d~~v~~HiC~Gn~~ 247 (368)
T PRK06520 170 KTWRDAIKAFYDAGCRYLQLDDTVWAYLCSDDQRQQIRERGDDPDELARIYARVLNKALA-GKPADLTIGLHVCRGNFR 247 (368)
T ss_pred HHHHHHHHHHHHCCCCEEEecCcchhhccChhhhhhhhhccCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEeecCCCC
Confidence 57788889999999999999976 7641 110 001111 1234455554443 664444789999998864
No 215
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=26.13 E-value=1.4e+02 Score=30.73 Aligned_cols=45 Identities=13% Similarity=0.319 Sum_probs=35.7
Q ss_pred HHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEe
Q 005715 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (681)
Q Consensus 275 ~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSF 329 (681)
....||++|+++|.+. +++++|.=+--.+-++.+.++||+. |+|.
T Consensus 73 S~~mLkd~G~~~viiG--------HSERRf~Etdi~~Kv~~a~~~gl~~--IvCi 117 (205)
T TIGR00419 73 SAEMLKDIGAKGTLIN--------HSERRMKLADIEKKIARLKELGLTS--VVCT 117 (205)
T ss_pred CHHHHHHcCCCEEEEC--------cccCCCCccHHHHHHHHHHHCCCEE--EEEE
Confidence 4578999999999986 5566666666677777888999987 7777
No 216
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=26.11 E-value=2.1e+02 Score=33.48 Aligned_cols=98 Identities=11% Similarity=0.079 Sum_probs=57.1
Q ss_pred cchHHH---HHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCC-hhHHhhhccCCC-eEeecCCCCccc----ccee--
Q 005715 305 AWSGYR---ELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLP-QWVMEIGKGNQD-IFFTDREGRRNT----ECLS-- 373 (681)
Q Consensus 305 dWsgY~---~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpLP-~WV~e~g~~~PD-I~ytDr~G~rn~----E~LS-- 373 (681)
.|+-|+ +|.++++++|+++.+ ||.+||.||-.- .| ..+..+-...|. +-+|-|.-.|.. ++..
T Consensus 216 ~w~l~~A~~~L~~~~~~~gv~i~~---fhGrGg~~~RGG---gpp~~~~ail~q~~g~~r~TeQga~rY~~~~e~~~~av 289 (494)
T PRK13655 216 VLSVKYALSRLYELEEELGVEIYP---ILGVGSLPFRGH---LSPENLENVLEEYPGVYTFTVQSAFRYDYPYEEVKKAI 289 (494)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEE---eccCCCCCCCCC---CChHHHHHHHhCCCCCeEEEeccccccCCCHHHHHHHH
Confidence 576665 567778999999854 899999998763 44 233333356666 445554432222 2211
Q ss_pred cccCcccccCCCchhHHHHHHHHHHHHHHHhhhhc
Q 005715 374 WGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVA 408 (681)
Q Consensus 374 lg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g~ 408 (681)
..+-+-....-..|.+.+++-|..+.+.....|-+
T Consensus 290 ~~~~~~~~~~p~~~~~~~~~~m~~la~~s~~~Yr~ 324 (494)
T PRK13655 290 EEINEKLIAPPRILSEEDKEELLEIIEKYSERYQS 324 (494)
T ss_pred HHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 00000000111246678889999888888877763
No 217
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=25.96 E-value=4e+02 Score=29.47 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeee--cc--CCCccccchHHHHHHHHHHHcCCcEEE
Q 005715 272 IRQEISHMKALNVDGVIVNCWWGIV--EG--WNPQKYAWSGYRELFNIIREFNLKVQV 325 (681)
Q Consensus 272 l~~~L~~LK~aGVdGV~vDVWWGiV--E~--~~p~~YdWsgY~~l~~mvr~~GLKvqv 325 (681)
...+++++.++|++.|.+-+--..+ +. .......|....+.++.+++.|++|++
T Consensus 77 ~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~ 134 (378)
T PRK11858 77 VKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSF 134 (378)
T ss_pred CHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 3566888889999987775532211 11 112344677888999999999998854
No 218
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=25.87 E-value=1.2e+02 Score=30.58 Aligned_cols=59 Identities=8% Similarity=0.084 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccc--hHHHHHHHHHHHcCCcEEEEEEee
Q 005715 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAW--SGYRELFNIIREFNLKVQVVMAFH 330 (681)
Q Consensus 270 ~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdW--sgY~~l~~mvr~~GLKvqvVmSFH 330 (681)
+.++.-++..+.+|++.|.+.-+-...+...+..+++ ...+++.+++++.|+++ .+-+|
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l--~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVML--AVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEE--EEEec
Confidence 5678888899999999998631100011111111111 35788999999999988 67776
No 219
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=25.62 E-value=67 Score=30.11 Aligned_cols=60 Identities=20% Similarity=0.275 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeee---eeecc-CCCccccchHHHHHHHHHHHcCCcEEEEEEee
Q 005715 269 PELIRQEISHMKALNVDGVIVNCWW---GIVEG-WNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (681)
Q Consensus 269 ~~~l~~~L~~LK~aGVdGV~vDVWW---GiVE~-~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFH 330 (681)
.+.++..++..+.+|+..|.+...+ ..... +..-..--..++++.+++++.|+++ ++-.|
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i--~lE~~ 133 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRI--ALENH 133 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEE--EEE-S
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceE--EEecc
Confidence 5788999999999999999988653 11110 0111222347788999999999665 55554
No 220
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=25.56 E-value=1.1e+02 Score=33.02 Aligned_cols=57 Identities=14% Similarity=0.206 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeecc--CC-CccccchHHHHHHHHHHHcCCcE--EEEEEee
Q 005715 273 RQEISHMKALNVDGVIVNCWWGIVEG--WN-PQKYAWSGYRELFNIIREFNLKV--QVVMAFH 330 (681)
Q Consensus 273 ~~~L~~LK~aGVdGV~vDVWWGiVE~--~~-p~~YdWsgY~~l~~mvr~~GLKv--qvVmSFH 330 (681)
+.+|++||..+||.|.+|.. |.=|- .- -..+.=.-|.+.+.++++.|++| ++++..|
T Consensus 100 E~~~eklk~~~vdvvsLDfv-gDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~ 161 (275)
T COG1856 100 ESDLEKLKEELVDVVSLDFV-GDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLD 161 (275)
T ss_pred HHHHHHHHHhcCcEEEEeec-CChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEec
Confidence 67899999999999999975 21110 00 01122346999999999999999 5566665
No 221
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=25.53 E-value=81 Score=34.82 Aligned_cols=50 Identities=14% Similarity=0.100 Sum_probs=34.2
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEE
Q 005715 272 IRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (681)
Q Consensus 272 l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqv 325 (681)
+...|+.+++.|+++|-.+. |.++-.... +.. -..++++.++++||+|+|
T Consensus 247 ~~~~l~~i~a~~a~~i~P~~-~~l~~~~~~--~~~-~~~~~v~~Ah~~GL~V~~ 296 (356)
T cd08560 247 WSPSMDELKARGVNIIAPPI-WMLVDPDEN--GKI-VPSEYAKAAKAAGLDIIT 296 (356)
T ss_pred HHHHHHHHHhCCccEecCch-hhccccccc--ccc-CCHHHHHHHHHcCCEEEE
Confidence 45779999999999876644 333322222 222 567899999999999943
No 222
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=25.41 E-value=1.4e+02 Score=29.57 Aligned_cols=45 Identities=22% Similarity=0.292 Sum_probs=37.1
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcC
Q 005715 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFN 320 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~G 320 (681)
|++++++.++.||..||+.|.|-.=|+.+-+. .=+++.+++++.|
T Consensus 132 d~~~v~~~~~~l~~~gv~avAV~~~fS~~np~--------hE~~v~eii~e~g 176 (176)
T PF05378_consen 132 DEDEVREALRELKDKGVEAVAVSLLFSYRNPE--------HEQRVAEIIREEG 176 (176)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECccCCCCHH--------HHHHHHHHHHhcC
Confidence 68999999999999999999998888877662 3356777777765
No 223
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=25.39 E-value=3.2e+02 Score=29.70 Aligned_cols=63 Identities=10% Similarity=0.264 Sum_probs=41.4
Q ss_pred cccCHHHHHHHHHHHHHcCc--ceEEEeee--------eee---eccCC--C---ccccc------hHHHHHHHHHHHcC
Q 005715 265 QLVDPELIRQEISHMKALNV--DGVIVNCW--------WGI---VEGWN--P---QKYAW------SGYRELFNIIREFN 320 (681)
Q Consensus 265 ~l~~~~~l~~~L~~LK~aGV--dGV~vDVW--------WGi---VE~~~--p---~~YdW------sgY~~l~~mvr~~G 320 (681)
...+.+.+..-++.+++.|+ |+|.+|.| |.. ++..+ + +.++| --.+++++-+++.|
T Consensus 19 ~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G 98 (340)
T cd06597 19 EWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQG 98 (340)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCC
Confidence 34578899999999999875 88999842 111 11111 1 12222 24689999999999
Q ss_pred CcEEEEEEe
Q 005715 321 LKVQVVMAF 329 (681)
Q Consensus 321 LKvqvVmSF 329 (681)
+|+ ++..
T Consensus 99 ~kv--~l~v 105 (340)
T cd06597 99 VKV--LLWQ 105 (340)
T ss_pred CEE--EEEe
Confidence 999 4444
No 224
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=25.23 E-value=1.9e+02 Score=27.12 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeee
Q 005715 268 DPELIRQEISHMKALNVDGVIVNCWWG 294 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~vDVWWG 294 (681)
..+......+.++++|+|+|++..-++
T Consensus 63 ~~~~~~~~a~~a~~~Gad~i~v~~~~~ 89 (201)
T cd00945 63 TTEVKVAEVEEAIDLGADEIDVVINIG 89 (201)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeccHH
Confidence 357777888999999999999976554
No 225
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=25.11 E-value=48 Score=36.89 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=33.9
Q ss_pred HHHHHHHc-CcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEe
Q 005715 275 EISHMKAL-NVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (681)
Q Consensus 275 ~L~~LK~a-GVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSF 329 (681)
.|..+++. ||+||.....+--. ...++-...+++-+.|+++||++-||=|+
T Consensus 16 ~l~~irQ~~Gv~giV~al~~~p~----g~~W~~e~i~~~k~~ie~~GL~~~vIEsv 67 (351)
T PF03786_consen 16 TLWDIRQQPGVTGIVTALHDIPN----GEVWDYEEIRALKERIEAAGLTLSVIESV 67 (351)
T ss_dssp -HHHHCTSTTEEEEEE--SSS-T----TS---HHHHHHHHHHHHCTT-EEEEEES-
T ss_pred hHHHHHHhcCCCCeeeCCCCCCC----CCCCCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 47778886 99999988865222 23456667889999999999999998765
No 226
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=24.66 E-value=1.5e+02 Score=30.19 Aligned_cols=56 Identities=14% Similarity=0.015 Sum_probs=42.4
Q ss_pred hHHHHHHHhhcCcEEEEeeecC---CCCCCCCCCChHHHHHHHHHHHHhcCCcccccccc
Q 005715 561 YAPVFEVLKKHSVTMKFVCAVP---SLQDQEALADPEGLSWQVLNLAWDRGLAVAGENAL 617 (681)
Q Consensus 561 Y~pIa~mfarh~v~l~FTClM~---d~e~~~a~s~Pe~Lv~QV~~aA~~~Gv~laGENAL 617 (681)
-..|++.+.+.|+...++|+.. +.+. -...--+.++..+....++.|+.++|||.-
T Consensus 124 ~~el~~~~~~~G~~~~i~~v~~~~l~~~~-lG~~~~~~~~~~l~~l~~~~~~~~~GE~GE 182 (218)
T TIGR03679 124 QEEYLRELVERGFRFIIVSVSAYGLDESW-LGREIDEKYIEKLKALNKRYGINPAGEGGE 182 (218)
T ss_pred HHHHHHHHHHCCCEEEEEEEecCCCChHH-CCCccCHHHHHHHHHHHhhcCccccCCCce
Confidence 5779999999999999999822 2111 012223678888999999999999999974
No 227
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=24.55 E-value=1.4e+02 Score=32.08 Aligned_cols=111 Identities=15% Similarity=0.154 Sum_probs=68.0
Q ss_pred ccCCCCCCCccccc-cccCCCCCCCCcCCCCCCccchhhhhhhhhhhcccCCCCcCcCCCCCCccEEEEeeceeecCCcc
Q 005715 187 IDESLSPASFDSVV-IPERDSRGGEFNASTSPINNSVECLEADQLIQDVRAGEHEDDFTGTPYIPVYVMLANHVINNFCQ 265 (681)
Q Consensus 187 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpVyVMLPLd~V~~~~~ 265 (681)
+|.-+-|..+.++. ++..-..--||..-++|+ ..-+ | +..-..-.++.+ +-||-.--|-.+.
T Consensus 24 ldkg~~p~f~~D~~~vagdyVDfvKfgwGT~~L-i~kd-----~-V~ekid~y~e~~------i~v~pGGtlfe~a---- 86 (258)
T COG1809 24 LDKGLGPRFVEDVLKVAGDYVDFVKFGWGTSSL-IDKD-----Q-VKEKIDMYKEND------IYVFPGGTLFEIA---- 86 (258)
T ss_pred EeCCCChHHHHHHHHhhhhheeeeeeccccccc-ccHH-----H-HHHHHHHHHHcC------ceecCCceEEEee----
Confidence 58888888876654 444446667887777776 2222 1 111111112222 2233222222221
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcE
Q 005715 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (681)
Q Consensus 266 l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKv 323 (681)
--.++++.-|+.+|++|++.|++.- +-=-.+=+.-.+|++++.+.|++|
T Consensus 87 -~~~~kvdeyl~e~~~lGfe~iEIS~--------G~i~m~~eek~~lIe~a~d~Gf~v 135 (258)
T COG1809 87 -YSQDKVDEYLNEAKELGFEAIEISN--------GTIPMSTEEKCRLIERAVDEGFMV 135 (258)
T ss_pred -hhcccHHHHHHHHHHcCccEEEecC--------CeeecchHHHHHHHHHHHhcccEE
Confidence 1236789999999999999998852 233345678899999999999998
No 228
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=24.48 E-value=1.9e+02 Score=28.49 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=35.0
Q ss_pred HHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEee
Q 005715 272 IRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (681)
Q Consensus 272 l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFH 330 (681)
++.-++.++++||+.|.+--+. +..++.+++++++.+ ++.+.+.+|
T Consensus 17 ~~~~~~~~~~~Gv~~~v~~~~~------------~~~~~~~~~~~~~~~-~i~~~~Gih 62 (252)
T TIGR00010 17 VEEVIERAKAAGVTAVVAVGTD------------LEDFLRALELAEKYP-NVYAAVGVH 62 (252)
T ss_pred HHHHHHHHHHcCCCEEEEecCC------------HHHHHHHHHHHHHCC-CEEEEEEeC
Confidence 5667788899999998733211 245677889999999 998888887
No 229
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=24.46 E-value=1.6e+02 Score=31.59 Aligned_cols=56 Identities=21% Similarity=0.451 Sum_probs=40.6
Q ss_pred ccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc-ch-----HHHHHHHHHHHcCCc
Q 005715 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA-WS-----GYRELFNIIREFNLK 322 (681)
Q Consensus 264 ~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Yd-Ws-----gY~~l~~mvr~~GLK 322 (681)
++|.-....+.-.++|+ .|+-.|++|||=| +...|-.|. |+ .++++++.|+++..+
T Consensus 24 ~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg--~~~eP~V~HG~tlts~i~f~~v~~~I~~~AF~ 85 (258)
T cd08629 24 DQLTGPSSTEAYIRALC-KGCRCLELDCWDG--PNQEPIIYHGYTFTSKILFCDVLRAIRDYAFK 85 (258)
T ss_pred CccCCccCHHHHHHHHH-hCCcEEEEEeecC--CCCCcEEeeCCCCccCcCHHHHHHHHHHHhcc
Confidence 56666667777777777 8999999999977 222243332 22 578999999998876
No 230
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=24.17 E-value=1.6e+02 Score=31.61 Aligned_cols=67 Identities=16% Similarity=0.228 Sum_probs=46.9
Q ss_pred CccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc---cch---HHHHHHHHHHHcCCc-----EEEEEEee
Q 005715 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---AWS---GYRELFNIIREFNLK-----VQVVMAFH 330 (681)
Q Consensus 263 ~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Y---dWs---gY~~l~~mvr~~GLK-----vqvVmSFH 330 (681)
+++|.-....+.-.++|+ .|+-.|++|||=|.-...+|-.| .+. .++++++.|+++..+ |+..|--|
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg~~~~~eP~v~Hg~t~t~~i~f~dv~~~I~~~aF~~s~yPvIlslE~H 100 (258)
T cd08625 23 AGQLTGLSSVEMYRQVLL-TGCRCIELDCWKGRPPEEEPFITHGFTMTTEIPFKDVIEAIAESAFKTSPYPVILSFENH 100 (258)
T ss_pred CCccCCccCHHHHHHHHH-cCCCEEEEEecCCCCCCCCCEEeeCCccccCcCHHHHHHHHHHHhccCCCCCEEEEehhc
Confidence 467777788888888885 89999999999664211234433 222 378999999997776 54445556
No 231
>PRK09993 C-lysozyme inhibitor; Provisional
Probab=24.15 E-value=57 Score=32.65 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=20.8
Q ss_pred eecCCCCcccccee-cccCcccccCCCchh
Q 005715 360 FTDREGRRNTECLS-WGVDKERVLNGRTGI 388 (681)
Q Consensus 360 ytDr~G~rn~E~LS-lg~D~~pVl~GRTpi 388 (681)
+...+.+-+.|-|+ |++|+.+-++|||.+
T Consensus 106 lv~vd~k~~~~~l~WL~~~d~~sidg~tvl 135 (153)
T PRK09993 106 FSTIDEKTSQEKLTWLNVNDALSIDGKTVL 135 (153)
T ss_pred EEEcCCCcChhheeeecCCCCcccccceee
Confidence 34445555668888 578888889999965
No 232
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=24.11 E-value=77 Score=33.30 Aligned_cols=57 Identities=14% Similarity=0.079 Sum_probs=39.7
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeeee-eeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCC
Q 005715 265 QLVDPELIRQEISHMKALNVDGVIVNCWW-GIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDS 337 (681)
Q Consensus 265 ~l~~~~~l~~~L~~LK~aGVdGV~vDVWW-GiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVG 337 (681)
.+.+...++ +.++.-++|+|.+|+=| |-+ +...++++||+++|+++ +++.| |.+++|
T Consensus 236 ~~~~~~~~~---~~~~~~~~d~v~~~~~~~GGi----------~~~~~~~~~a~~~gi~~--~~~~~-~~~~i~ 293 (316)
T cd03319 236 SCFSAADAA---RLAGGGAYDGINIKLMKTGGL----------TEALRIADLARAAGLKV--MVGCM-VESSLS 293 (316)
T ss_pred CCCCHHHHH---HHHhcCCCCEEEEeccccCCH----------HHHHHHHHHHHHcCCCE--EEECc-hhhHHH
Confidence 455555554 55777899999999764 322 23589999999999999 55544 355554
No 233
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=23.90 E-value=2e+02 Score=28.27 Aligned_cols=51 Identities=14% Similarity=0.014 Sum_probs=39.6
Q ss_pred HHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeecc
Q 005715 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEY 332 (681)
Q Consensus 275 ~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqC 332 (681)
++.+||+.||++|.+=+.-|. .|.=..|.+-++-|+++||++-+..=++.|
T Consensus 16 d~~~vk~~gi~fviiKateG~-------~~~D~~~~~~~~~a~~~Gl~vG~Yhy~~~~ 66 (191)
T cd06413 16 DWARVRAQGVSFAYIKATEGG-------DHVDKRFAENWRGARAAGLPRGAYHFFTFC 66 (191)
T ss_pred CHHHHHhCCCcEEEEEEcCCC-------CccCHHHHHHHHHHHHcCCceEEEEEEecC
Confidence 477889999999999985332 244477888888999999999877666654
No 234
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=23.71 E-value=1.9e+02 Score=29.92 Aligned_cols=71 Identities=15% Similarity=0.312 Sum_probs=52.1
Q ss_pred ccCHHHHHHHHHHHHHc--CcceEEEeeeeeeeccCCCccc--c-----chHHHHHHHHHHHcCCcEEEEEEeeccCCCC
Q 005715 266 LVDPELIRQEISHMKAL--NVDGVIVNCWWGIVEGWNPQKY--A-----WSGYRELFNIIREFNLKVQVVMAFHEYGAND 336 (681)
Q Consensus 266 l~~~~~l~~~L~~LK~a--GVdGV~vDVWWGiVE~~~p~~Y--d-----WsgY~~l~~mvr~~GLKvqvVmSFHqCGGNV 336 (681)
..+.+.+..-.+.+++. -+|.|.+|.+|..- -+.+ + |.--+++++-+++.|+|+ ++..|
T Consensus 20 ~~~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~----~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~--~~~~~------ 87 (265)
T cd06589 20 YGDQDKVLEVIDGMRENDIPLDGFVLDDDYTDG----YGDFTFDWDAGKFPNPKSMIDELHDNGVKL--VLWID------ 87 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCccEEEECcccccC----CceeeeecChhhCCCHHHHHHHHHHCCCEE--EEEeC------
Confidence 46788899999999984 56899999999742 2333 3 445688999999999999 55554
Q ss_pred CCCccccCChhHHhhhc
Q 005715 337 SGDAWISLPQWVMEIGK 353 (681)
Q Consensus 337 GD~~~IpLP~WV~e~g~ 353 (681)
+.| -.|..+.-+
T Consensus 88 ---P~v--~~w~~~~~~ 99 (265)
T cd06589 88 ---PYI--REWWAEVVK 99 (265)
T ss_pred ---hhH--HHHHHHHHH
Confidence 223 778887544
No 235
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=23.64 E-value=2.1e+02 Score=32.55 Aligned_cols=51 Identities=10% Similarity=0.110 Sum_probs=39.1
Q ss_pred HHHHHHHHcCcceEEEeeeeeeeccCCC-------ccccchHHHHHHHHHHHcCCcEEEEEEe
Q 005715 274 QEISHMKALNVDGVIVNCWWGIVEGWNP-------QKYAWSGYRELFNIIREFNLKVQVVMAF 329 (681)
Q Consensus 274 ~~L~~LK~aGVdGV~vDVWWGiVE~~~p-------~~YdWsgY~~l~~mvr~~GLKvqvVmSF 329 (681)
..|+.||++|+..|.+.+ |...+ +..+.+.+.+.+++++++|+++.+-+=+
T Consensus 288 ell~~l~~aG~~~v~iGi-----ES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~ 345 (497)
T TIGR02026 288 DILHLYRRAGLVHISLGT-----EAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFIT 345 (497)
T ss_pred HHHHHHHHhCCcEEEEcc-----ccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 467889999999888864 55333 4567888999999999999988554444
No 236
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=23.49 E-value=1.8e+02 Score=31.33 Aligned_cols=64 Identities=19% Similarity=0.399 Sum_probs=44.1
Q ss_pred CccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccc---cchH---HHHHHHHHHHcCCcE---EEEEEe
Q 005715 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKY---AWSG---YRELFNIIREFNLKV---QVVMAF 329 (681)
Q Consensus 263 ~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Y---dWsg---Y~~l~~mvr~~GLKv---qvVmSF 329 (681)
+++|.-....+.-.++|+ .|+-.|++|||=| +...|-.| .+.. ++++++.|+++..+. =+|||+
T Consensus 23 g~Ql~~~ss~e~y~~aL~-~GcRcvElD~wdg--~~~eP~V~HG~tlts~i~f~~v~~~Ik~~AF~~s~yPvIlsl 95 (258)
T cd08631 23 EDQLRGQSSVEGYIRALK-RGCRCVEVDVWDG--PNGEPIVYHGHTFTSKILFKDVVAAVAQYAFQVSDYPVILSL 95 (258)
T ss_pred CCcccCccCHHHHHHHHH-cCCcEEEEEeecC--CCCCcEEeeCCcccCCcCHHHHHHHHHHHhccCCCCCEEEEe
Confidence 356777777787778887 5999999999976 22223333 2222 899999999998762 335554
No 237
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=23.45 E-value=2.5e+02 Score=34.59 Aligned_cols=46 Identities=20% Similarity=0.398 Sum_probs=37.2
Q ss_pred ccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcE
Q 005715 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (681)
Q Consensus 264 ~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKv 323 (681)
+.+.+.++++++|+.||++|++-|.+- +.=|. .+..++|-+.||=|
T Consensus 315 G~~~~~~~~~~dl~lmk~~n~N~vRts---HyP~~-----------~~~ydLcDelGllV 360 (808)
T COG3250 315 GRVTDEDAMERDLKLMKEANMNSVRTS---HYPNS-----------EEFYDLCDELGLLV 360 (808)
T ss_pred ccccCHHHHHHHHHHHHHcCCCEEEec---CCCCC-----------HHHHHHHHHhCcEE
Confidence 556789999999999999999988874 44443 35677888899887
No 238
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=23.28 E-value=2e+02 Score=28.82 Aligned_cols=58 Identities=16% Similarity=0.064 Sum_probs=42.6
Q ss_pred HHHHHHHHHcCcceEEEeeeeeeecc------CCCccccchHHHHHHHHHHHcCCcEEEEE-Eeecc
Q 005715 273 RQEISHMKALNVDGVIVNCWWGIVEG------WNPQKYAWSGYRELFNIIREFNLKVQVVM-AFHEY 332 (681)
Q Consensus 273 ~~~L~~LK~aGVdGV~vDVWWGiVE~------~~p~~YdWsgY~~l~~mvr~~GLKvqvVm-SFHqC 332 (681)
...++.++++|++.|.+-+=-. +. ......++....+.++.+++.|+++.+.+ ....|
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s--~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~ 141 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSAS--ETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC 141 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC
Confidence 6789999999999998877422 11 01222367788899999999999998887 45544
No 239
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=23.24 E-value=96 Score=33.16 Aligned_cols=72 Identities=15% Similarity=0.076 Sum_probs=51.5
Q ss_pred cCCCCCCccEEEEeeceeecCCccccCHHHHHHHHHHHHH----cCcceEEEeeeeeeeccCCCccccchHHHHHHHHHH
Q 005715 242 DFTGTPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKA----LNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIR 317 (681)
Q Consensus 242 ~~~~~~~vpVyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~----aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr 317 (681)
+++..-+-..-||-||.--+..++..+++.+...||+||- .|+. |+|||-+=..-.-..--+.++.|+
T Consensus 90 ~yA~acGA~aLvlcPlNd~s~~~~~vr~~~lv~AlkaLkpil~~~gi~--------GLVEPLGF~~csLRsk~eA~~aI~ 161 (272)
T COG4130 90 DYAAACGAKALVLCPLNDGSWPGTAVRREDLVEALKALKPILDEYGIT--------GLVEPLGFRVCSLRSKAEAAEAIR 161 (272)
T ss_pred HHHHhcCCceEEEEeccCCCCCCcccchHHHHHHHHHhhHHHHHhCcc--------ccccccCchhhhhhhHHHHHHHHH
Confidence 3455677788999999775555778899999999999985 5665 578876544444444456677788
Q ss_pred HcCC
Q 005715 318 EFNL 321 (681)
Q Consensus 318 ~~GL 321 (681)
++|=
T Consensus 162 aa~g 165 (272)
T COG4130 162 AAGG 165 (272)
T ss_pred HhCC
Confidence 7763
No 240
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=23.24 E-value=1.8e+02 Score=27.23 Aligned_cols=55 Identities=20% Similarity=0.291 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHH-cCcceEEEeeeeeeec-cCCCccccchHHHHH-HHHHHHcCCcEEEEEEeec
Q 005715 270 ELIRQEISHMKA-LNVDGVIVNCWWGIVE-GWNPQKYAWSGYREL-FNIIREFNLKVQVVMAFHE 331 (681)
Q Consensus 270 ~~l~~~L~~LK~-aGVdGV~vDVWWGiVE-~~~p~~YdWsgY~~l-~~mvr~~GLKvqvVmSFHq 331 (681)
+-+-+++++||. .|.|.|.+.-= -+.+ ++=| ....++. -..+++.|+|| ||++|-
T Consensus 42 rlvpn~~k~lk~~egaeaihfasC-ml~~~PkCp----y~~~eei~Kk~ie~~~i~V--v~gTH~ 99 (101)
T COG5561 42 RLVPNQIKQLKGKEGAEAIHFASC-MLAFKPKCP----YASAEEIAKKEIEKMGIKV--VMGTHF 99 (101)
T ss_pred chhHHHHHHHhhccccceeeeeee-eeccCCCCC----ccCHHHHHHHHHHHhCCcE--Eeecce
Confidence 567889999996 66888877532 2333 3211 2223555 45678999999 999994
No 241
>PLN02417 dihydrodipicolinate synthase
Probab=23.15 E-value=3.3e+02 Score=28.61 Aligned_cols=93 Identities=10% Similarity=0.035 Sum_probs=52.4
Q ss_pred CCccEEEEeeceeecCCccccCHHHHHHHHHHHHHcCcceEEEee--eeeeeccCCCccccchHHHHHHHHHHHcCCcEE
Q 005715 247 PYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNC--WWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQ 324 (681)
Q Consensus 247 ~~vpVyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDV--WWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvq 324 (681)
..+||.+..-- ++.+..-...++.+++|+|+||+-- |+.. .. .+..+.|+-+.++.
T Consensus 69 ~~~pvi~gv~~---------~~t~~~i~~a~~a~~~Gadav~~~~P~y~~~-----~~----~~i~~~f~~va~~~---- 126 (280)
T PLN02417 69 GKIKVIGNTGS---------NSTREAIHATEQGFAVGMHAALHINPYYGKT-----SQ----EGLIKHFETVLDMG---- 126 (280)
T ss_pred CCCcEEEECCC---------ccHHHHHHHHHHHHHcCCCEEEEcCCccCCC-----CH----HHHHHHHHHHHhhC----
Confidence 35777654322 2335556677888999999999832 2211 11 23333444444444
Q ss_pred EEEEeeccCCCCCCCccccCChhHHhhhccCCC-eEeecCCCC
Q 005715 325 VVMAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREGR 366 (681)
Q Consensus 325 vVmSFHqCGGNVGD~~~IpLP~WV~e~g~~~PD-I~ytDr~G~ 366 (681)
+|+=++- .+ ...+.|+.-++..-.++|. +-++|.+|.
T Consensus 127 pi~lYn~-P~----~tg~~l~~~~l~~l~~~pni~giKdss~~ 164 (280)
T PLN02417 127 PTIIYNV-PG----RTGQDIPPEVIFKIAQHPNFAGVKECTGN 164 (280)
T ss_pred CEEEEEC-hh----HhCcCCCHHHHHHHhcCCCEEEEEeCCCc
Confidence 5665531 11 1224566667665557888 567888886
No 242
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=23.12 E-value=1.7e+02 Score=32.02 Aligned_cols=54 Identities=15% Similarity=0.136 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeee--eeeeccCCCccccchHHHHHHHHHHHcCC
Q 005715 268 DPELIRQEISHMKALNVDGVIVNCW--WGIVEGWNPQKYAWSGYRELFNIIREFNL 321 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~vDVW--WGiVE~~~p~~YdWsgY~~l~~mvr~~GL 321 (681)
+++-+.---++.+++|.||+|+.|. =...=..++||.++..++++.+-++..+.
T Consensus 227 rr~lv~pla~AA~AaGAdglmiEVHp~P~~AlsD~~Qql~~~~f~~l~~~~~~~~~ 282 (286)
T COG2876 227 RRDLVEPLAKAAIAAGADGLMIEVHPDPEKALSDAKQQLTPEEFEELVKELRALAD 282 (286)
T ss_pred chhhHHHHHHHHHhccCCeeEEEecCCcccccCcccccCCHHHHHHHHHHHHHHhh
Confidence 4444555556778999999999998 23333357999999999999998887654
No 243
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=23.08 E-value=1e+03 Score=26.23 Aligned_cols=128 Identities=13% Similarity=0.222 Sum_probs=86.6
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEEeee--eeeecc----------CCCccccchHHHHHHHHHHHcCCcEEE-EEEeec
Q 005715 265 QLVDPELIRQEISHMKALNVDGVIVNCW--WGIVEG----------WNPQKYAWSGYRELFNIIREFNLKVQV-VMAFHE 331 (681)
Q Consensus 265 ~l~~~~~l~~~L~~LK~aGVdGV~vDVW--WGiVE~----------~~p~~YdWsgY~~l~~mvr~~GLKvqv-VmSFHq 331 (681)
.+.+++.+++-|+.+|+.|++.|.|||= +|.|== ..-..+ -.-.+++++.+++.|+-+++ |.+|
T Consensus 8 ~a~~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~-i~D~~~l~~~l~e~gIY~IARIv~F-- 84 (316)
T PF13200_consen 8 SAGSPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPY-IKDLKALVKKLKEHGIYPIARIVVF-- 84 (316)
T ss_pred hcCCHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhccccccc-ccCHHHHHHHHHHCCCEEEEEEEEe--
Confidence 3567889999999999999999999996 665421 111112 35678899999999999876 5556
Q ss_pred cCCCCCCCccccCChhHHhhhccCCCeEeecCCCCccc--cceecccCcccccCCCchhHHHHHHHHHHHHHHHhhhhcc
Q 005715 332 YGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNT--ECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAG 409 (681)
Q Consensus 332 CGGNVGD~~~IpLP~WV~e~g~~~PDI~ytDr~G~rn~--E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g~~ 409 (681)
-|+. . .+++||..+....|..-. +-.+ |+|-- .+.-.+|.-..+.+-+.. |
T Consensus 85 -----kD~~-l---------a~~~pe~av~~~~G~~w~d~~~~~-WvnP~--------~~evw~Y~i~IA~Eaa~~-G-- 137 (316)
T PF13200_consen 85 -----KDPV-L---------AEAHPEWAVKTKDGSVWRDNEGEA-WVNPY--------SKEVWDYNIDIAKEAAKL-G-- 137 (316)
T ss_pred -----cChH-H---------hhhChhhEEECCCCCcccCCCCCc-cCCCC--------CHHHHHHHHHHHHHHHHc-C--
Confidence 1332 1 245777777666664322 2222 34431 578889999999998865 4
Q ss_pred ceEEEEecccCCcCCCCCC
Q 005715 410 LICAVEIGLGPSGELKYPS 428 (681)
Q Consensus 410 vI~eI~VGLGPaGELRYPS 428 (681)
+.||+.= =+|||.
T Consensus 138 -FdEIqfD-----YIRFP~ 150 (316)
T PF13200_consen 138 -FDEIQFD-----YIRFPD 150 (316)
T ss_pred -CCEEEee-----eeecCC
Confidence 6777652 467777
No 244
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=22.97 E-value=2.1e+02 Score=29.46 Aligned_cols=64 Identities=17% Similarity=0.115 Sum_probs=46.9
Q ss_pred EEeeceeecCCccccCHHHHHHHHHHHH-----HcCcc----eEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcE
Q 005715 253 VMLANHVINNFCQLVDPELIRQEISHMK-----ALNVD----GVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (681)
Q Consensus 253 VMLPLd~V~~~~~l~~~~~l~~~L~~LK-----~aGVd----GV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKv 323 (681)
+++|-+.|. ++.+.|.++...-|++|+ .+|.. .|.|+.|+..+|+ +.+.+.++.+||++
T Consensus 24 ~~~~~~~~~-~g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r-----------~a~~~a~~~aGl~~ 91 (239)
T TIGR02529 24 VMQFADVVR-DGIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDP-----------KVIVNVIESAGIEV 91 (239)
T ss_pred Eeccccccc-CCeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccH-----------HHHHHHHHHcCCce
Confidence 344544443 577899999999999998 34543 5677788877776 57889999999999
Q ss_pred EEEEE
Q 005715 324 QVVMA 328 (681)
Q Consensus 324 qvVmS 328 (681)
..++.
T Consensus 92 ~~li~ 96 (239)
T TIGR02529 92 LHVLD 96 (239)
T ss_pred EEEee
Confidence 65543
No 245
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=22.87 E-value=1.5e+02 Score=34.02 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEee
Q 005715 268 DPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFH 330 (681)
Q Consensus 268 ~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFH 330 (681)
+.+.+.+..+.++++|..+|||++.+| |++.+.|.+.+++.+|-|+.=-++|
T Consensus 224 ~~~em~~ra~~a~~~G~~~~mv~~~~G-----------~~~l~~l~~~a~~~~l~IhaHrA~~ 275 (450)
T cd08212 224 TMEEMYKRAEFAKELGSPIIMHDLLTG-----------FTAIQSLAKWCRDNGMLLHLHRAGH 275 (450)
T ss_pred CHHHHHHHHHHHHHhCCCeEeeecccc-----------cchHHHHHHHhhhcCceEEeccccc
Confidence 468999999999999999999997664 4556777777778877665444444
No 246
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=22.82 E-value=2.4e+02 Score=22.93 Aligned_cols=44 Identities=11% Similarity=0.204 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEE
Q 005715 271 LIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQV 325 (681)
Q Consensus 271 ~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqv 325 (681)
.++.-++++|+.|++.|-+ .+-. +..++.++.+.+++.||++.+
T Consensus 16 ~~~~~~~~a~~~g~~~v~i------TDh~-----~~~~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 16 SPEELVKRAKELGLKAIAI------TDHG-----NLFGAVEFYKAAKKAGIKPII 59 (67)
T ss_pred CHHHHHHHHHHcCCCEEEE------eeCC-----cccCHHHHHHHHHHcCCeEEE
Confidence 3667889999999999965 3331 567788999999999998843
No 247
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=22.73 E-value=1.9e+02 Score=30.62 Aligned_cols=66 Identities=18% Similarity=0.282 Sum_probs=44.8
Q ss_pred ccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---ch---HHHHHHHHHHHcCCc-----EEEEEEeecc
Q 005715 264 CQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---WS---GYRELFNIIREFNLK-----VQVVMAFHEY 332 (681)
Q Consensus 264 ~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Yd---Ws---gY~~l~~mvr~~GLK-----vqvVmSFHqC 332 (681)
++|.-....+.-.++| ..|+-.|++|||=| +...|-.|. .. -++++++.|++++.+ |...|--|.|
T Consensus 24 ~Ql~~~ss~e~Y~~aL-~~GcRcvElD~wdg--~~~ePvV~HG~tlts~i~f~dv~~aI~~~AF~~s~yPvIlSlE~Hcs 100 (227)
T cd08594 24 DQLLSQSRVDMYARVL-QAGCRCVEVDCWDG--PDGEPVVHHGYTLTSKILFRDVIETINKYAFIKNEYPVILSIENHCS 100 (227)
T ss_pred CcccCcccHHHHHHHH-HhCCcEEEEEeecC--CCCCcEEeeCCCcccCcCHHHHHHHHHHhhccCCCCCEEEEecccCC
Confidence 4566666677777777 78999999999976 222243332 11 368999999998776 5455555644
No 248
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=22.65 E-value=1.9e+02 Score=30.95 Aligned_cols=57 Identities=26% Similarity=0.429 Sum_probs=40.7
Q ss_pred CccccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc---c---hHHHHHHHHHHHcCCc
Q 005715 263 FCQLVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA---W---SGYRELFNIIREFNLK 322 (681)
Q Consensus 263 ~~~l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Yd---W---sgY~~l~~mvr~~GLK 322 (681)
+++|.-....+.-.++|+ .|+-.|++|||=| +...|-.|. + =.++++++.|++++.+
T Consensus 23 g~Ql~~~ss~~~y~~aL~-~GcRcvElD~wdg--~~~eP~v~HG~t~t~~i~f~~v~~~I~~~aF~ 85 (257)
T cd08593 23 EDQLKGPSSTEAYIRALK-KGCRCVELDCWDG--PDGEPIIYHGHTLTSKILFKDVIQAIREYAFK 85 (257)
T ss_pred CCcccCCccHHHHHHHHH-hCCcEEEEEeecC--CCCCcEEeeCCccccCcCHHHHHHHHHHHhcc
Confidence 356666677777777777 8999999999977 222344333 1 2468999999998866
No 249
>PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=22.58 E-value=1.3e+02 Score=32.77 Aligned_cols=60 Identities=17% Similarity=0.098 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHcCcceEEEeee-eeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCC
Q 005715 270 ELIRQEISHMKALNVDGVIVNCW-WGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDS 337 (681)
Q Consensus 270 ~~l~~~L~~LK~aGVdGV~vDVW-WGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVG 337 (681)
++++..+++|.++|++.|-+|.= |...= .. .-+.|.++++.+-+ |++.. .+.|-|-||-+
T Consensus 156 ~al~~Ei~~L~~aG~~~IQiDeP~l~~~~----~~-~~~~~v~~~n~~~~-g~~~~--v~~HvC~G~~~ 216 (339)
T PRK09121 156 KILNQEAKELEAAGVDIIQFDEPAFNVFF----DE-VNDWGVAALERAIE-GLKCE--TAVHICYGYGI 216 (339)
T ss_pred HHHHHHHHHHHHCCCCEEEecccHHhhhh----HH-HHHHHHHHHHHHHc-CCCCc--eEEEEeCCCCC
Confidence 46678889999999999999965 66311 00 13556566665554 67764 44599988864
No 250
>PRK03705 glycogen debranching enzyme; Provisional
Probab=22.53 E-value=1e+02 Score=36.68 Aligned_cols=51 Identities=20% Similarity=0.496 Sum_probs=35.7
Q ss_pred HHHHHHHcCcceEEEe-e----------------eeee-------eccCCCcccc------chHHHHHHHHHHHcCCcEE
Q 005715 275 EISHMKALNVDGVIVN-C----------------WWGI-------VEGWNPQKYA------WSGYRELFNIIREFNLKVQ 324 (681)
Q Consensus 275 ~L~~LK~aGVdGV~vD-V----------------WWGi-------VE~~~p~~Yd------WsgY~~l~~mvr~~GLKvq 324 (681)
.|..||++||+.|.+- | .||. +|+ .|- =..+++|++-+++.||||.
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~----~ygt~~~~~~~efk~LV~~~H~~GI~VI 259 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDP----AYASGPETALDEFRDAVKALHKAGIEVI 259 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccc----ccCCCCcchHHHHHHHHHHHHHCCCEEE
Confidence 4999999999999762 2 2441 222 111 1258999999999999996
Q ss_pred EEEEe
Q 005715 325 VVMAF 329 (681)
Q Consensus 325 vVmSF 329 (681)
.=+-|
T Consensus 260 lDvV~ 264 (658)
T PRK03705 260 LDVVF 264 (658)
T ss_pred EEEcc
Confidence 65556
No 251
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=22.51 E-value=80 Score=31.51 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHcCcceEEEee
Q 005715 270 ELIRQEISHMKALNVDGVIVNC 291 (681)
Q Consensus 270 ~~l~~~L~~LK~aGVdGV~vDV 291 (681)
+++++.|+.|+++|||||+|.-
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~~ 23 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVSN 23 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEcC
Confidence 5789999999999999999964
No 252
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=22.43 E-value=3.7e+02 Score=28.15 Aligned_cols=114 Identities=17% Similarity=0.171 Sum_probs=0.0
Q ss_pred CCCccEEEEeeceeecCCccccCHHHHHHHHHHHHHcCcceEEE--eeeeeeeccCCCccccchHHHHHHHHHHHcCCcE
Q 005715 246 TPYIPVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIV--NCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (681)
Q Consensus 246 ~~~vpVyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~v--DVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKv 323 (681)
...+||++..--..+ +..-+..+..+++|+|+||+ +.|+..-+. .-|+-+-+++...++.|
T Consensus 65 ~~~~~vi~gv~~~s~---------~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~--------~i~~~~~~i~~~~~~pi 127 (285)
T TIGR00674 65 NGRVPVIAGTGSNAT---------EEAISLTKFAEDVGADGFLVVTPYYNKPTQE--------GLYQHFKAIAEEVDLPI 127 (285)
T ss_pred CCCCeEEEeCCCccH---------HHHHHHHHHHHHcCCCEEEEcCCcCCCCCHH--------HHHHHHHHHHhcCCCCE
Q ss_pred EEEEEeeccCCCCCCCccccCChhHHhhhccCCC-eEeecCCCCccc--cceecccCcccccCC
Q 005715 324 QVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQD-IFFTDREGRRNT--ECLSWGVDKERVLNG 384 (681)
Q Consensus 324 qvVmSFHqCGGNVGD~~~IpLP~WV~e~g~~~PD-I~ytDr~G~rn~--E~LSlg~D~~pVl~G 384 (681)
...-.=..+| +.|+.-+.+.-.++|. +.++|-+|.... +++...-|++.||.|
T Consensus 128 ~lYn~P~~tg--------~~l~~~~l~~L~~~~~v~giK~s~~d~~~~~~l~~~~~~~~~v~~G 183 (285)
T TIGR00674 128 ILYNVPSRTG--------VSLYPETVKRLAEEPNIVAIKEATGNLERISEIKAIAPDDFVVLSG 183 (285)
T ss_pred EEEECcHHhc--------CCCCHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHhcCCCeEEEEC
No 253
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=22.17 E-value=1.1e+02 Score=34.22 Aligned_cols=70 Identities=16% Similarity=0.158 Sum_probs=46.8
Q ss_pred cEEEEeeceeecCCccccCHHHHHHHHHHHHHcCcceEEEee---------------------eeee--eccCCCccccc
Q 005715 250 PVYVMLANHVINNFCQLVDPELIRQEISHMKALNVDGVIVNC---------------------WWGI--VEGWNPQKYAW 306 (681)
Q Consensus 250 pVyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~aGVdGV~vDV---------------------WWGi--VE~~~p~~YdW 306 (681)
|+|+-.-++ +|-+|.| +.=.+-+++.|++|+|.|-.-- ||+. -|--..-..+|
T Consensus 14 ~~~iIAEig-~NHnG~l---e~A~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~i~~~~~~~slyel~e~~~~p~ 89 (347)
T COG2089 14 KPFIIAEIG-ANHNGDL---ERAKELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFKIKTLWDKVSLYELYEEAETPL 89 (347)
T ss_pred CcEEEeeec-ccccCcH---HHHHHHHHHHHHcCcceeeeecccccccccccccCCccccccccccccHHHHHHHhcCCH
Confidence 445555554 2444545 3344557788899999998766 6662 22222345789
Q ss_pred hHHHHHHHHHHHcCCcE
Q 005715 307 SGYRELFNIIREFNLKV 323 (681)
Q Consensus 307 sgY~~l~~mvr~~GLKv 323 (681)
+|+.+|++.|++.|+-+
T Consensus 90 e~~~~Lke~a~~~Gi~~ 106 (347)
T COG2089 90 EWHAQLKEYARKRGIIF 106 (347)
T ss_pred HHHHHHHHHHHHcCeEE
Confidence 99999999999999743
No 254
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=22.11 E-value=2.2e+02 Score=27.48 Aligned_cols=109 Identities=17% Similarity=0.124 Sum_probs=62.5
Q ss_pred HHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhHHhhhccC
Q 005715 276 ISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGN 355 (681)
Q Consensus 276 L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpLP~WV~e~g~~~ 355 (681)
..+||+.||++|++=+.-|.- |.=..|..-.+.++++||++-+..-++.| |..+. ..==.|+.+..+
T Consensus 12 w~~~k~~gi~fviikateG~~-------~~D~~~~~n~~~a~~aGl~~G~Yhf~~~~--~~~~a--~~qA~~f~~~~~-- 78 (181)
T PF01183_consen 12 WQKVKAAGIDFVIIKATEGTS-------YVDPYFESNIKNAKAAGLPVGAYHFARAT--NSSDA--EAQADYFLNQVK-- 78 (181)
T ss_dssp HHHHHHTTEEEEEEEEEETTT-------EE-TTHHHHHHHHHHTTSEEEEEEE--TT--THCHH--HHHHHHHHHCTH--
T ss_pred HHHHHHCCCCEEEEEeeeCCC-------eecchHHHHHHHHHHcCCeEEEEEEeccC--CcccH--HHHHHHHHHHhc--
Confidence 567799999999999864431 33345788888999999999777666544 22211 000023333221
Q ss_pred CCeEeecCCCCccccceecccCcccccCCCchhHHHHHHHHHHHHHHHhhhh
Q 005715 356 QDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFMRSFRTEFDDLFV 407 (681)
Q Consensus 356 PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g 407 (681)
+ .....+-+++|-+--...........++++.|.+++....|
T Consensus 79 ---------~-~~~~~~~~~lD~E~~~~~~~~~~~~~~~~~~f~~~~~~~~G 120 (181)
T PF01183_consen 79 ---------G-GDPGDLPPALDVEDDKSNNPSKSDNTAWVKAFLDEVEKAAG 120 (181)
T ss_dssp ---------T-SSTSCS-EEEEE-S-GGCCSSHHHHHHHHHHHHHHHHHHCT
T ss_pred ---------c-cCCCcceEEEeccccccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 1 11222223444331122334467888999999999977665
No 255
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=22.00 E-value=1.3e+02 Score=33.61 Aligned_cols=59 Identities=12% Similarity=0.101 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHcCcceEEEeeeeeeecc----CCCccccchHHHHHHHHHHHcCCcEEEEEEe
Q 005715 271 LIRQEISHMKALNVDGVIVNCWWGIVEG----WNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (681)
Q Consensus 271 ~l~~~L~~LK~aGVdGV~vDVWWGiVE~----~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSF 329 (681)
.++.-|++||++|.|.++..-===++|. ..|.+-++.+..+..+.|.+.|++-...|-+
T Consensus 159 s~~E~l~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI~~tatml~ 221 (370)
T COG1060 159 SYEEVLKRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGIPTTATMLL 221 (370)
T ss_pred CHHHHHHHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEE
Confidence 4566799999999999987544334443 5699999999999999999999999888877
No 256
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=21.92 E-value=3.2e+02 Score=31.10 Aligned_cols=82 Identities=18% Similarity=0.378 Sum_probs=45.3
Q ss_pred CCCccccc---hHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCccccCChhHHhhhccCCCeEeecCCCCccccceecc
Q 005715 299 WNPQKYAW---SGYRELFNIIREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWG 375 (681)
Q Consensus 299 ~~p~~YdW---sgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~~IpLP~WV~e~g~~~PDI~ytDr~G~rn~E~LSlg 375 (681)
..++.||| .+-+-+++.|++.|.+. ++.| . -++|.|+..-|... .+.....+|.
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~--f~aF----------S-NSPP~~MT~NG~~~--------g~~~~~~NLk-- 149 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNI--FEAF----------S-NSPPWWMTKNGSAS--------GGDDGSDNLK-- 149 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT-----EEEE------------SSS-GGGSSSSSSB---------S-SSS-SS---
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCe--EEEe----------e-cCCCHHHhcCCCCC--------CCCccccccC--
Confidence 46899999 67778899999999998 7777 2 26888887433321 1111123332
Q ss_pred cCcccccCCCchhHHHHHHHHHHHHHHHhhhhccceEEE
Q 005715 376 VDKERVLNGRTGIEVYFDFMRSFRTEFDDLFVAGLICAV 414 (681)
Q Consensus 376 ~D~~pVl~GRTpiq~Y~DFmrSFr~~F~~~~g~~vI~eI 414 (681)
-|. .+.|.+||....++| +-.| =.|+-|
T Consensus 150 ~d~---------y~~FA~YLa~Vv~~~-~~~G-I~f~~I 177 (384)
T PF14587_consen 150 PDN---------YDAFADYLADVVKHY-KKWG-INFDYI 177 (384)
T ss_dssp TT----------HHHHHHHHHHHHHHH-HCTT---EEEE
T ss_pred hhH---------HHHHHHHHHHHHHHH-HhcC-Ccccee
Confidence 222 688889999999998 4445 234444
No 257
>cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon. PTE exists as a homodimer with one active site per monomer. The active site is located next to a binuclear metal center, at the C-terminal end of a TIM alpha- beta barrel motif. The native enzyme contains two zinc ions at the active site however these can be replaced with other metals such as cobalt, cadmium, nickel or manganese and the enzyme remains active.
Probab=21.89 E-value=2.1e+02 Score=29.32 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=39.1
Q ss_pred ccCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeecc
Q 005715 266 LVDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEY 332 (681)
Q Consensus 266 l~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqC 332 (681)
+.+.+.....|+.++++||..|. | +|.. +.++ +| +.+.+++++.|+++.+.+.+|.+
T Consensus 28 ~~~~~~~~~~~~~~~~~Gvttiv-~--~~~~---~~~~-~~---~~~~~~~~~~g~~v~~~~G~hp~ 84 (293)
T cd00530 28 LADVEAAKEELKRFRAHGGRTIV-D--ATPP---GIGR-DV---EKLAEVARATGVNIVAATGFYKD 84 (293)
T ss_pred hhhHHHHHHHHHHHHHcCCCeEE-E--cCCc---ccCc-CH---HHHHHHHHHhCCcEEEecccCCC
Confidence 45667888899999999998772 2 2211 0011 33 66778888999999888888743
No 258
>PF07775 PaRep2b: PaRep2b protein; InterPro: IPR011689 This is a group of proteins, expressed in the crenarchaeon Pyrobaculum aerophilum, whose members are variable in length and level of conservation. The presence of numerous frameshifts and internal stop codons in multiple alignments are thought to indicate that most family members are no longer functional [].
Probab=21.87 E-value=2.5e+02 Score=32.92 Aligned_cols=87 Identities=17% Similarity=0.254 Sum_probs=61.9
Q ss_pred hhhhhhcccCCCCcCcCCCCCCccEEEEee-ceeecCCccccCHHHHHHHHHHHHHcCc-ceEEEeeeeeeeccCCCccc
Q 005715 227 ADQLIQDVRAGEHEDDFTGTPYIPVYVMLA-NHVINNFCQLVDPELIRQEISHMKALNV-DGVIVNCWWGIVEGWNPQKY 304 (681)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~vpVyVMLP-Ld~V~~~~~l~~~~~l~~~L~~LK~aGV-dGV~vDVWWGiVE~~~p~~Y 304 (681)
.++++.++..++..-.++ +|.+.|.+- .+.|..--+-.+++++++.+++||++|. +||+.-+= .|+.|
T Consensus 181 ~~~L~~~ieaGPN~ve~A---gVefSV~~~k~~~l~i~y~P~s~~sf~aAV~aLk~~Gl~EGvHFTak-------~p~~~ 250 (512)
T PF07775_consen 181 YERLLKKIEAGPNVVEIA---GVEFSVRYEKSKRLVIRYQPRSEESFNAAVKALKAAGLEEGVHFTAK-------RPEGY 250 (512)
T ss_pred HHHHHHHHhcCCCCCccc---ccEEEEEEccCCeEEEEEccCCHHHHHHHHHHHHhccccccCceEEe-------cCCce
Confidence 456788887765554444 488888887 4444333445689999999999999996 56665542 34446
Q ss_pred cc----hHHHHHHHHHHHcCCcE
Q 005715 305 AW----SGYRELFNIIREFNLKV 323 (681)
Q Consensus 305 dW----sgY~~l~~mvr~~GLKv 323 (681)
+- ..|.+.++.....|||=
T Consensus 251 ei~v~~~a~~ka~eal~~~gl~e 273 (512)
T PF07775_consen 251 EIRVTKEAYAKAVEALAQSGLKE 273 (512)
T ss_pred EEEeehhHHHHHHHHHHhccccc
Confidence 53 57899999999999986
No 259
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=21.73 E-value=4.3e+02 Score=27.30 Aligned_cols=72 Identities=10% Similarity=0.123 Sum_probs=46.8
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEeeccCCCCCCCc--cccC
Q 005715 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAFHEYGANDSGDA--WISL 344 (681)
Q Consensus 267 ~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSFHqCGGNVGD~~--~IpL 344 (681)
.+...+.+.|+...+.|++-|.+- ||.-.+ ......-+.++++++.+.+.|.=| |.+- ||-|... .+|.
T Consensus 86 ~~~~~i~~Ai~~Ai~~gadIIn~S--~g~~~~-~~~~~~~~~l~~ai~~A~~~Gilv--vaaA----GN~g~~~~~~~~~ 156 (247)
T cd07491 86 ITPQSAAKAIEAAVEKKVDIISMS--WTIKKP-EDNDNDINELENAIKEALDRGILL--FCSA----SDQGAFTGDTYPP 156 (247)
T ss_pred cCHHHHHHHHHHHHHCCCcEEEee--eecccc-cccccchHHHHHHHHHHHhCCeEE--EEec----CCCCCcCCCcccC
Confidence 366789999999999999988777 675332 111223567788888888877433 4444 6666554 4555
Q ss_pred Chh
Q 005715 345 PQW 347 (681)
Q Consensus 345 P~W 347 (681)
|.+
T Consensus 157 pa~ 159 (247)
T cd07491 157 PAA 159 (247)
T ss_pred ccc
Confidence 654
No 260
>PLN02389 biotin synthase
Probab=21.66 E-value=6.3e+02 Score=28.26 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=39.4
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcE
Q 005715 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKV 323 (681)
Q Consensus 267 ~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKv 323 (681)
-+++.+.+..+.+++.|+..|.+-..|-..- ....+|.+|.++++.+++.+|.+
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~---~e~~~~e~i~eiir~ik~~~l~i 169 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTV---GRKTNFNQILEYVKEIRGMGMEV 169 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCC---CChhHHHHHHHHHHHHhcCCcEE
Confidence 3668888899999999999987755552211 11235788999999999888765
No 261
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=21.48 E-value=1.5e+02 Score=35.54 Aligned_cols=63 Identities=16% Similarity=0.330 Sum_probs=40.7
Q ss_pred HHHHH--HHHHHHHcCcceEEEe-e----------------eeeeecc---CCCccc----cchHHHHHHHHHHHcCCcE
Q 005715 270 ELIRQ--EISHMKALNVDGVIVN-C----------------WWGIVEG---WNPQKY----AWSGYRELFNIIREFNLKV 323 (681)
Q Consensus 270 ~~l~~--~L~~LK~aGVdGV~vD-V----------------WWGiVE~---~~p~~Y----dWsgY~~l~~mvr~~GLKv 323 (681)
.+|.. .|..||++||+.|.+- | +||.-=. .-...| .-..+++|++.+++.||+|
T Consensus 182 ~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~V 261 (688)
T TIGR02100 182 AGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEV 261 (688)
T ss_pred HHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEE
Confidence 55554 4999999999999752 2 2542100 001122 3456999999999999999
Q ss_pred EEEEEe-ecc
Q 005715 324 QVVMAF-HEY 332 (681)
Q Consensus 324 qvVmSF-HqC 332 (681)
..=+-| |-+
T Consensus 262 IlDvV~NHt~ 271 (688)
T TIGR02100 262 ILDVVYNHTA 271 (688)
T ss_pred EEEECcCCcc
Confidence 655555 444
No 262
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=21.44 E-value=2.6e+02 Score=29.41 Aligned_cols=51 Identities=4% Similarity=0.033 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEe
Q 005715 269 PELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (681)
Q Consensus 269 ~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSF 329 (681)
.+..+.++++....|++.|.+-+-.. +.+--.+.++.+++.|+++++-+++
T Consensus 90 ~~~~~~di~~~~~~g~~~iri~~~~~----------~~~~~~~~i~~ak~~G~~v~~~i~~ 140 (275)
T cd07937 90 DDVVELFVEKAAKNGIDIFRIFDALN----------DVRNLEVAIKAVKKAGKHVEGAICY 140 (275)
T ss_pred cHHHHHHHHHHHHcCCCEEEEeecCC----------hHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 35678899999999999988854322 2567788899999999998765544
No 263
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=21.27 E-value=97 Score=34.71 Aligned_cols=51 Identities=14% Similarity=0.091 Sum_probs=34.9
Q ss_pred HHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHHHHHcCCcEEEEEEe
Q 005715 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNIIREFNLKVQVVMAF 329 (681)
Q Consensus 275 ~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKvqvVmSF 329 (681)
.|..++++||+||....- .--....+.-+-..++=++|.++||.+-||=|.
T Consensus 15 ~l~~irQ~Gv~gIV~aLh----~iP~g~~W~~~~I~~~k~~ie~~Gl~~~vvESv 65 (362)
T COG1312 15 TLEDIRQAGVKGVVTALH----HIPAGEVWPVEEILKRKEEIESAGLTWSVVESV 65 (362)
T ss_pred cHHHHHHhCccceeccCC----CCCCCCcCcHHHHHHHHHHHHHcCceEEeecCC
Confidence 467778889999875432 222233455566678888888899888888776
No 264
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=21.14 E-value=5.6e+02 Score=28.21 Aligned_cols=36 Identities=11% Similarity=0.242 Sum_probs=20.6
Q ss_pred cceecccCcccccCCCchhHH--------HHHHHHHHHHHHHhhhh
Q 005715 370 ECLSWGVDKERVLNGRTGIEV--------YFDFMRSFRTEFDDLFV 407 (681)
Q Consensus 370 E~LSlg~D~~pVl~GRTpiq~--------Y~DFmrSFr~~F~~~~g 407 (681)
++|.+|+|-+-+ ||.-+.. =.++++++.+++..++.
T Consensus 278 k~l~~GAd~v~i--g~~~l~~~~~~g~~~v~~~i~~~~~eL~~~m~ 321 (352)
T PRK05437 278 KALALGADAVGM--AGPFLKAALEGGEEAVIELIEQWIEELKIAMF 321 (352)
T ss_pred HHHHcCCCEEEE--hHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 666777775433 4333322 12377777777777764
No 265
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=21.03 E-value=2e+02 Score=34.88 Aligned_cols=98 Identities=19% Similarity=0.248 Sum_probs=62.9
Q ss_pred ccCCCCcCcCC-CCCCccEEEEeeceeecCCccccCHHHHHHH--HHHHHHcCcceEEE-eeeeeeeccC---CCccccc
Q 005715 234 VRAGEHEDDFT-GTPYIPVYVMLANHVINNFCQLVDPELIRQE--ISHMKALNVDGVIV-NCWWGIVEGW---NPQKYAW 306 (681)
Q Consensus 234 ~~~~~~~~~~~-~~~~vpVyVMLPLd~V~~~~~l~~~~~l~~~--L~~LK~aGVdGV~v-DVWWGiVE~~---~p~~YdW 306 (681)
|-=.+|-+||+ .++.||--.--+- .+|... |..||++||..|++ +|..-+-|+. ....|+|
T Consensus 173 vIYE~HVr~fT~~~~~v~~~~rGTy------------~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~W 240 (697)
T COG1523 173 VIYEAHVRDFTQLHPGVPEELRGTY------------LGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNW 240 (697)
T ss_pred EEEEeeecccccCCCCCchhhccce------------ehhccccHHHHHHHhCCceEEEecceEEecccccccccccccc
Confidence 33446778888 7788874332222 233333 99999999999985 7775555542 3567777
Q ss_pred h------------------------HHHHHHHHHHHcCCcEEEEEEe-eccCCCCCCCccccC
Q 005715 307 S------------------------GYRELFNIIREFNLKVQVVMAF-HEYGANDSGDAWISL 344 (681)
Q Consensus 307 s------------------------gY~~l~~mvr~~GLKvqvVmSF-HqCGGNVGD~~~IpL 344 (681)
- .++++++-++++||-|+-=+=| |-+.||.- .++.++
T Consensus 241 GYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~-g~t~~f 302 (697)
T COG1523 241 GYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNEL-GPTLSF 302 (697)
T ss_pred CCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCc-Cccccc
Confidence 3 4788888889999999332233 77766632 234444
No 266
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=20.94 E-value=1.8e+02 Score=29.78 Aligned_cols=59 Identities=10% Similarity=0.200 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc--chHHHHHHHHHHHcCCcEEEEEEee
Q 005715 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA--WSGYRELFNIIREFNLKVQVVMAFH 330 (681)
Q Consensus 270 ~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Yd--WsgY~~l~~mvr~~GLKvqvVmSFH 330 (681)
+.++..++..+.+|+..|.+.-....-+...+..++ ...++++++++++.|+++ .|-.|
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l--~lE~~ 154 (279)
T TIGR00542 94 EIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTL--AVEIM 154 (279)
T ss_pred HHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEE--EEeeC
Confidence 458889999999999988653110001111111122 245678999999999987 66555
No 267
>PRK14705 glycogen branching enzyme; Provisional
Probab=20.91 E-value=1.7e+02 Score=37.64 Aligned_cols=53 Identities=19% Similarity=0.334 Sum_probs=37.4
Q ss_pred HHHHHH-HHHHHHcCcceEEEeeeeeeeccCCCccccch-----------------HHHHHHHHHHHcCCcEEEEEEe
Q 005715 270 ELIRQE-ISHMKALNVDGVIVNCWWGIVEGWNPQKYAWS-----------------GYRELFNIIREFNLKVQVVMAF 329 (681)
Q Consensus 270 ~~l~~~-L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWs-----------------gY~~l~~mvr~~GLKvqvVmSF 329 (681)
+++... |..||++||+.|.+== +.|- |..++|- .++++++.+++.||+| ||-+
T Consensus 765 ~~l~~~lldYlk~LGvt~IeLmP---v~e~--p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~V--ILD~ 835 (1224)
T PRK14705 765 RELAKELVDYVKWLGFTHVEFMP---VAEH--PFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGV--LLDW 835 (1224)
T ss_pred HHHHHHHHHHHHHhCCCEEEECc---cccC--CCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEE--EEEe
Confidence 555555 6999999999997531 2332 3334453 3899999999999999 5543
No 268
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=20.73 E-value=2.2e+02 Score=28.62 Aligned_cols=57 Identities=18% Similarity=0.135 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeeeccCCCccccc----hHHHHHHHHHHHcCCcEEEEEEee
Q 005715 270 ELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYAW----SGYRELFNIIREFNLKVQVVMAFH 330 (681)
Q Consensus 270 ~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdW----sgY~~l~~mvr~~GLKvqvVmSFH 330 (681)
+.+++-+...+.+|+..|. ++.|......+..=.| ...+++.+++++.|+++ .|-+|
T Consensus 84 ~~~~~~i~~a~~lg~~~i~--~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l--~lE~~ 144 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVN--CLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTL--LIEPI 144 (254)
T ss_pred HHHHHHHHHHHHhCCCEEE--ECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEE--EEEEC
Confidence 5677888889999999775 5666543211111123 45788999999999887 66655
No 269
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=20.57 E-value=2.3e+02 Score=26.78 Aligned_cols=44 Identities=11% Similarity=0.188 Sum_probs=38.9
Q ss_pred CChHHHHHHHhhcCcEEEEeeecCCCCCCCCCCChHHHHHHHHHHHHhcCCcc
Q 005715 559 DGYAPVFEVLKKHSVTMKFVCAVPSLQDQEALADPEGLSWQVLNLAWDRGLAV 611 (681)
Q Consensus 559 DGY~pIa~mfarh~v~l~FTClM~d~e~~~a~s~Pe~Lv~QV~~aA~~~Gv~l 611 (681)
-|+..+.+.+++..+.|.|-+ ..++|.++...+...|+++||++
T Consensus 33 ~G~~~v~kaikkgkakLVilA---------~D~s~~~i~~~~~~lc~~~~Vp~ 76 (122)
T PRK04175 33 KGTNETTKAVERGIAKLVVIA---------EDVDPEEIVAHLPLLCEEKKIPY 76 (122)
T ss_pred EcHHHHHHHHHcCCccEEEEe---------CCCChHHHHHHHHHHHHHcCCCE
Confidence 489999999999999999986 24778889999999999999995
No 270
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=20.48 E-value=2.8e+02 Score=28.15 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHcCcceEEEeeeeeee-ccCCCccccchH----HHHHHHHHHHcCCcEEEEEEee
Q 005715 270 ELIRQEISHMKALNVDGVIVNCWWGIV-EGWNPQKYAWSG----YRELFNIIREFNLKVQVVMAFH 330 (681)
Q Consensus 270 ~~l~~~L~~LK~aGVdGV~vDVWWGiV-E~~~p~~YdWsg----Y~~l~~mvr~~GLKvqvVmSFH 330 (681)
+.+++-++..+.+|+..|.+ .||.. +...+.+ .|.. .+++.+++++.|+++ .+-.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~--~~g~~~~~~~~~~-~~~~~~~~l~~l~~~a~~~Gv~l--~lE~~ 145 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINC--LVGKTPAGFSSEQ-IHATLVENLRYAANMLMKEDILL--LIEPI 145 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEE--CCCCCCCCCCHHH-HHHHHHHHHHHHHHHHHHcCCEE--EEEeC
Confidence 56788889999999998865 34432 1111222 1433 377788889999887 66654
No 271
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=20.41 E-value=3.5e+02 Score=36.15 Aligned_cols=66 Identities=12% Similarity=0.154 Sum_probs=47.2
Q ss_pred cCHHHHHHHHHHHHHcCcceEEEeeeeeeeccCCCcccc-------------chHHHHHHHHHHHcCCcEEEEEEeeccC
Q 005715 267 VDPELIRQEISHMKALNVDGVIVNCWWGIVEGWNPQKYA-------------WSGYRELFNIIREFNLKVQVVMAFHEYG 333 (681)
Q Consensus 267 ~~~~~l~~~L~~LK~aGVdGV~vDVWWGiVE~~~p~~Yd-------------WsgY~~l~~mvr~~GLKvqvVmSFHqCG 333 (681)
..-+++.+.|-.||++||+.|-+--.+--... +..-|| ...+++|++.++++||||..=+-+.-++
T Consensus 755 ~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~g-s~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~ 833 (1693)
T PRK14507 755 FTFADAEAILPYLAALGISHVYASPILKARPG-STHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHMG 833 (1693)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECCCcCCCCC-CCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 35588999999999999999988766542211 222333 4568899999999999995555554343
No 272
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=20.38 E-value=1.5e+02 Score=31.37 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=37.2
Q ss_pred HHHHHHHcCcceEEEeeeeeeeccCCCccccchHHHHHHHH----HHHcCCcEEEEEEe
Q 005715 275 EISHMKALNVDGVIVNCWWGIVEGWNPQKYAWSGYRELFNI----IREFNLKVQVVMAF 329 (681)
Q Consensus 275 ~L~~LK~aGVdGV~vDVWWGiVE~~~p~~YdWsgY~~l~~m----vr~~GLKvqvVmSF 329 (681)
+...||++|+++|.+. +++++=.+.-=++++.. +.++||+. |+|.
T Consensus 78 S~~mLkd~G~~~viiG--------HSERR~~f~Etd~~v~~K~~~a~~~gl~p--IvCi 126 (250)
T PRK00042 78 SAEMLKDLGVKYVIIG--------HSERRQYFGETDELVNKKVKAALKAGLTP--ILCV 126 (250)
T ss_pred CHHHHHHCCCCEEEeC--------cccccCccCcCHHHHHHHHHHHHHCCCEE--EEEc
Confidence 4578999999999996 66777777777788777 99999988 8887
No 273
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.35 E-value=8.9e+02 Score=26.01 Aligned_cols=115 Identities=12% Similarity=0.191 Sum_probs=75.3
Q ss_pred cccCHHHHHHHHHHHHHcCcceEEE---eeeeeee-c-------------------------cCCCccccchHHHHHHHH
Q 005715 265 QLVDPELIRQEISHMKALNVDGVIV---NCWWGIV-E-------------------------GWNPQKYAWSGYRELFNI 315 (681)
Q Consensus 265 ~l~~~~~l~~~L~~LK~aGVdGV~v---DVWWGiV-E-------------------------~~~p~~YdWsgY~~l~~m 315 (681)
.+-..+.|++.|..|...++..+++ |= |.+- + ....+.|.=+-++++++.
T Consensus 12 ~~~~~~~ik~~id~ma~~K~N~lhlHltD~-~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT~~di~eiv~y 90 (326)
T cd06564 12 KYYSMDFLKDIIKTMSWYKMNDLQLHLNDN-LIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYTKEEFKELIAY 90 (326)
T ss_pred CCCCHHHHHHHHHHHHHcCCceEEEeecCC-cccccCCCchhhhhhhhhccccccccccCCCCCCCCcccHHHHHHHHHH
Confidence 4557799999999999999998885 32 3321 1 113567888899999999
Q ss_pred HHHcCCcEEEEEEeeccCCCCCCCccccCChhHHhhhccCCCeEeecCCCCccccceecccCcccccCCCchhHHHHHHH
Q 005715 316 IREFNLKVQVVMAFHEYGANDSGDAWISLPQWVMEIGKGNQDIFFTDREGRRNTECLSWGVDKERVLNGRTGIEVYFDFM 395 (681)
Q Consensus 316 vr~~GLKvqvVmSFHqCGGNVGD~~~IpLP~WV~e~g~~~PDI~ytDr~G~rn~E~LSlg~D~~pVl~GRTpiq~Y~DFm 395 (681)
|++.|+.|+ +.|-.|.=.....+.+|++.............|.+. .+.=.+|+
T Consensus 91 A~~rgI~vI---------------PEID~PGH~~a~~~~~pel~~~~~~~~~~~~~l~~~------------~~~t~~f~ 143 (326)
T cd06564 91 AKDRGVNII---------------PEIDSPGHSLAFTKAMPELGLKNPFSKYDKDTLDIS------------NPEAVKFV 143 (326)
T ss_pred HHHcCCeEe---------------ccCCCcHHHHHHHHhhHHhcCCCcccCCCcccccCC------------CHHHHHHH
Confidence 999999993 445667654444466777655443222233334332 23334577
Q ss_pred HHHHHHHHhhhh
Q 005715 396 RSFRTEFDDLFV 407 (681)
Q Consensus 396 rSFr~~F~~~~g 407 (681)
.+.-+++.+.+.
T Consensus 144 ~~l~~E~~~~f~ 155 (326)
T cd06564 144 KALFDEYLDGFN 155 (326)
T ss_pred HHHHHHHHHhcC
Confidence 777777777765
Done!