BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005716
(681 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225456246|ref|XP_002279352.1| PREDICTED: uncharacterized protein LOC100264639 [Vitis vinifera]
Length = 674
Score = 1023 bits (2646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/683 (75%), Positives = 577/683 (84%), Gaps = 11/683 (1%)
Query: 1 MQILQSSHLFTFPKPLNPNRPLLHNNNNNRRHVTFPAA--ATTKSFPPKCFSSDEFPVDE 58
MQILQS HLFTFP +RP + R V F A + + F K SSDEFPVDE
Sbjct: 1 MQILQSPHLFTFPS----HRPPRTLPKSYRLPVPFRAGNLSVSGKFVVKSVSSDEFPVDE 56
Query: 59 TFLEQFGPKDKETEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGDEVALQSPEAVE 118
TFLE+FGPKDKETEDEARR+NWIERGWAPWEEILTPEADFARKSLNEG+EV L++PEA+E
Sbjct: 57 TFLEKFGPKDKETEDEARRKNWIERGWAPWEEILTPEADFARKSLNEGEEVPLKTPEAIE 116
Query: 119 AFKMLKPSYRMKKIKEMGITEDEWYKKQFEIKGEIPEKLETVWAAPLLVTHVAPRDWPPR 178
AFKML P YR KK++E G+TEDEWY KQFEIKGEIPE + T W PL+V HV PRDWPPR
Sbjct: 117 AFKMLNPKYRKKKMEESGLTEDEWYAKQFEIKGEIPEPVRTFWDGPLVVRHVPPRDWPPR 176
Query: 179 GWEVDRKELEYIREAHKLQNVRVEIGELERKAKFEREGFNFDMYRVFLKQYNQWVAANKD 238
GWEV+RKEL +IREAHKLQ VRV+ LE A+ + N + Y+ FLKQYN+WV NKD
Sbjct: 177 GWEVNRKELAFIREAHKLQAVRVDPKGLE-SARTNTDDLNLERYKTFLKQYNEWVEHNKD 235
Query: 239 RLEEESYKYDQDYYPGRRKRGKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGV 298
RLEEES++ DQDY+PGRRKRGKDYEEGMYELPFYYPGQIC GKVTT+HLYQGAFVDIGGV
Sbjct: 236 RLEEESFQDDQDYHPGRRKRGKDYEEGMYELPFYYPGQICAGKVTTLHLYQGAFVDIGGV 295
Query: 299 YDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPNIDHLIFNRFD 358
YDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFV PNIDHLIFNRFD
Sbjct: 296 YDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVDPNIDHLIFNRFD 355
Query: 359 FAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNAEQLIL 418
F PIFH DED NPDELRRDCGRPP+P+K PG+K EEE LLS HPYVDKLWQIH AEQ+IL
Sbjct: 356 FPPIFHHDEDTNPDELRRDCGRPPIPKKDPGIKVEEEPLLSNHPYVDKLWQIHVAEQMIL 415
Query: 419 DDMEANPDKYKGKKLSELTDDEEFDDENSVEYTKVNYKKALLAKIILKTSVKELDLEAAL 478
DDME NP KY+GKKL+ELTDDE+FD+ENSVEYTKV YKK+LL K ILKTSVKELDLEAAL
Sbjct: 416 DDMEVNPHKYEGKKLTELTDDEDFDEENSVEYTKVYYKKSLLPKKILKTSVKELDLEAAL 475
Query: 479 AEREHHNKLQREAKERGEQYKVYKLRRNFEMDEYNFIHWRRSLEEREALIRDISCRQALG 538
AERE+HNKL++EAKERGE+YK+YKLRRN EMDEY+ IHWRRS EEREALIRDISCRQALG
Sbjct: 476 AEREYHNKLRKEAKERGEEYKIYKLRRNIEMDEYDLIHWRRSFEEREALIRDISCRQALG 535
Query: 539 LPLEEPGRYKEDSFFGKDEYDPSNPLYRYDYWGEPKNSEKSLQERMRDAHNKSIVGKGMV 598
LPLEEPG+ + S+FGK +YDP +PLYRYDYWGEPKNSEKS Q+RM DAHNKSIVGKG V
Sbjct: 536 LPLEEPGKLVDASYFGKGQYDPQHPLYRYDYWGEPKNSEKSKQQRMTDAHNKSIVGKGTV 595
Query: 599 WYEMSYDDVIKQKMQREARSKCVTPEEVEEEDSTSGHGNGDDDDDGDFDYSILSDSSSLS 658
WYEMSY+D IKQ+MQREAR+K + E EE+D T + DDD+ SIL D SS+
Sbjct: 596 WYEMSYEDAIKQRMQREARAKEMRKEAAEEDDDTEEEDDDDDDEFDF---SILGD-SSVD 651
Query: 659 FSNQPVVNGTESSSISDEGMFED 681
+SNQP+VNGTESS +SDEGMFE+
Sbjct: 652 YSNQPLVNGTESSRMSDEGMFEN 674
>gi|449440582|ref|XP_004138063.1| PREDICTED: uncharacterized protein LOC101217647 [Cucumis sativus]
gi|449501394|ref|XP_004161354.1| PREDICTED: uncharacterized LOC101217647 [Cucumis sativus]
Length = 672
Score = 1011 bits (2615), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/686 (72%), Positives = 568/686 (82%), Gaps = 24/686 (3%)
Query: 3 ILQSSHLFTFPKPLNPNRPLLHNNNNNRRHVTF-------PAAATTKSFPPKCFSSDEFP 55
+L SH FTFP L + N+N H +F P +F KCFSSDEFP
Sbjct: 4 LLNPSHFFTFPN-------LPTSRNSNSPHSSFQWRPLLCPPLTLPGNFSVKCFSSDEFP 56
Query: 56 VDETFLEQFGPKDKETEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGDEVALQSPE 115
VDE+FLE+FGPKD+ETED+AR+RNW+ERGWAPWEE+ TPEADFARKSLNEG+EV LQ+PE
Sbjct: 57 VDESFLEKFGPKDEETEDQARKRNWVERGWAPWEEVFTPEADFARKSLNEGEEVPLQTPE 116
Query: 116 AVEAFKMLKPSYRMKKIKEMGITEDEWYKKQFEIKGEIPEKLETVWAAPLLVTHVAPRDW 175
A+EAFKML P YR +K++EMG+TED++Y+ Q EIKGEIPE LET W PL++ V PRDW
Sbjct: 117 AIEAFKMLSPKYRKQKMEEMGLTEDDYYRTQCEIKGEIPEPLETTWTRPLVLQVVPPRDW 176
Query: 176 PPRGWEVDRKELEYIREAHKLQNVRVEIGELERKAKFEREGFNFDMYRVFLKQYNQWVAA 235
PPRGW+VDR+ELE+IR AHKLQ VRV++ LE+ + + E D Y+VFLKQY +WVAA
Sbjct: 177 PPRGWDVDREELEFIRGAHKLQAVRVDLDRLEKDVRTDTEDLCLDRYKVFLKQYKEWVAA 236
Query: 236 NKDRLEEESYKYDQDYYPGRRKRGKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDI 295
NKDRLEEESYKYDQDY+PGRRKRGKDY+EGMYELPFYYPGQICEGKVTT+HLYQGAFVDI
Sbjct: 237 NKDRLEEESYKYDQDYHPGRRKRGKDYKEGMYELPFYYPGQICEGKVTTLHLYQGAFVDI 296
Query: 296 GGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPNIDHLIFN 355
GGVYDGWVPIKGNDWYWIRHHIKVGM VIVEILAKRDPYRFRFPIEMRFV PNIDHLIFN
Sbjct: 297 GGVYDGWVPIKGNDWYWIRHHIKVGMPVIVEILAKRDPYRFRFPIEMRFVHPNIDHLIFN 356
Query: 356 RFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNAEQ 415
RFD+ PIFHRDED NPDE+RRDCGRPP+PRK PG+KPE+E LLS HPYV+KLWQIH AEQ
Sbjct: 357 RFDYPPIFHRDEDDNPDEVRRDCGRPPIPRKDPGIKPEDETLLSNHPYVEKLWQIHVAEQ 416
Query: 416 LILDDMEANPDKYKGKKLSELTDDEEFDDENSVEYTKVNYKKALLAKIILKTSVKELDLE 475
+ILDD E NPDKY+ KKLSEL+D+E+FD+ENS+EYTKV YK +LL K ILKTSVKELDLE
Sbjct: 417 MILDDWEMNPDKYRDKKLSELSDEEDFDEENSIEYTKVRYKNSLLPKKILKTSVKELDLE 476
Query: 476 AALAEREHHNKLQREAKERGEQYKVYKLRRNFEMDEYNFIHWRRSLEEREALIRDISCRQ 535
AAL+ER+ HNKL++EA+ERGE YK+ KLRRN EMDEY+ +HWRRS EEREALIRDISCRQ
Sbjct: 477 AALSERQVHNKLRQEAQERGEDYKITKLRRNLEMDEYDLMHWRRSFEEREALIRDISCRQ 536
Query: 536 ALGLPLEEPGRYKEDSFFGKDEYDPSNPLYRYDYWGEPKNSEKSLQERMRDAHNKSIVGK 595
ALGLPLEEPGRY + S+FGKD+YDPSNPLYRYDYWGEPKNSEKS QERM DAHNKSIVGK
Sbjct: 537 ALGLPLEEPGRYVDASYFGKDQYDPSNPLYRYDYWGEPKNSEKSKQERMTDAHNKSIVGK 596
Query: 596 GMVWYEMSYDDVIKQKMQREARSKCVTPEEVEEEDSTSGHGNGDDDDDGDFDYSILSDSS 655
G+VWYEMSY+D IK++M+REA K ++ +E+D + SIL DSS
Sbjct: 597 GVVWYEMSYEDAIKEQMEREASPKVAEEDDTDEDDDDDDDFDF----------SILQDSS 646
Query: 656 SLSFSNQPVVNGTESSSISDEGMFED 681
F QP VNGTESS ISDEGMFED
Sbjct: 647 VDEFPTQPHVNGTESSRISDEGMFED 672
>gi|356508784|ref|XP_003523134.1| PREDICTED: uncharacterized protein LOC100775818 [Glycine max]
Length = 674
Score = 994 bits (2569), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/689 (72%), Positives = 573/689 (83%), Gaps = 23/689 (3%)
Query: 1 MQILQSSHLFTFPKPLNPNRPLLHN------NNNNRRHVTFPAAATTKSFPPKCFSSDEF 54
MQ+LQ+S+LFTFPKPLNP+ LH+ ++ +RR +T K FSSDEF
Sbjct: 1 MQVLQTSYLFTFPKPLNPSPQRLHHRLQPFLHHRHRRPLTIS----------KSFSSDEF 50
Query: 55 PVDETFLEQFGPKDKETEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGDEVALQSP 114
PVDETFLE FGPKDKETEDEARRRNWIERGWAPWEEILTPEADFARKSLNEG+EV L+SP
Sbjct: 51 PVDETFLENFGPKDKETEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGEEVPLRSP 110
Query: 115 EAVEAFKMLKPSYRMKKIKEMGITEDEWYKKQFEIKGEIPEKLETVWAAPLLVTHVAPRD 174
EA+EAFKML P+YR KK +EMG+TE+E+Y KQFEIKGEIP+ L T WA PL+V VAPRD
Sbjct: 111 EAIEAFKMLNPNYRKKKREEMGLTEEEFYAKQFEIKGEIPDPLVTTWAGPLVVRLVAPRD 170
Query: 175 WPPRGWEVDRKELEYIREAHKLQNVRVEIGELERKAKFEREGFNFDMYRVFLKQYNQWVA 234
WPPRGW VDR+EL +IREAH++Q RV + E+E + + + D Y+VFLKQY +WV
Sbjct: 171 WPPRGWCVDREELAFIREAHRMQARRVRLEEVESGVRTDTDDAGLDRYKVFLKQYKEWVE 230
Query: 235 ANKDRLEEESYKYDQDYYPGRRKRGKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVD 294
ANKDRLE ESYK DQDYYPGRRKRGKDY+EGMYELPFYYPGQIC GKVT +HLYQGAFVD
Sbjct: 231 ANKDRLEVESYKQDQDYYPGRRKRGKDYKEGMYELPFYYPGQICVGKVTMLHLYQGAFVD 290
Query: 295 IGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPNIDHLIF 354
IGGV+DGWVPIK NDWYW+RHHIKVGMHVIVEI AKRDPYRFRFPIE+R V PNIDHLIF
Sbjct: 291 IGGVHDGWVPIKNNDWYWLRHHIKVGMHVIVEITAKRDPYRFRFPIELRLVDPNIDHLIF 350
Query: 355 NRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNAE 414
N+FDFAPIFHRDED N DE+RRDCGRPPVPRK PG +PEEE LLS HPYV+KLWQI+ AE
Sbjct: 351 NKFDFAPIFHRDEDTNEDEIRRDCGRPPVPRKDPGDRPEEEPLLSNHPYVEKLWQINVAE 410
Query: 415 QLILDDMEANPDKYKGKKLSELTDDEEFDDENSVEYTKVNYKKALLAKIILKTSVKELDL 474
Q+ILDDM NPDKY+GKKLS+L D+E+FD++N+VEYTKV YK +L + LKTSVKELDL
Sbjct: 411 QMILDDMAINPDKYEGKKLSDLVDEEDFDEQNAVEYTKVQYKNTMLPQTTLKTSVKELDL 470
Query: 475 EAALAEREHHNKLQREAKERGEQYKVYKLRRNFEMDEYNFIHWRRSLEEREALIRDISCR 534
EAALAERE H KL+ EA++RGE+YK+ KLRRN EMDEY+++HWRRS EERE LIRDISCR
Sbjct: 471 EAALAERELHLKLRTEAEDRGEKYKITKLRRNVEMDEYDYMHWRRSFEERETLIRDISCR 530
Query: 535 QALGLPLEEPGRYKEDSFFGKDEYDPSNPLYRYDYWGEPKNSEKSLQERMRDAHNKSIVG 594
+ LGLPLEEPGRY + SFFGKD+YDP++PLYRYDYWGEPKNSEKS+QERM D HNK IVG
Sbjct: 531 KVLGLPLEEPGRYMDASFFGKDQYDPTSPLYRYDYWGEPKNSEKSMQERMTDIHNKKIVG 590
Query: 595 KGMVWYEMSYDDVIKQKMQREARSKCVTPEEVEEEDSTSGHG--NGDDDDDGDFDYSILS 652
KG VWYEMSY+D IKQ+M+ EA+SK E+ ED+ GH + DD+DD DFD+SILS
Sbjct: 591 KGNVWYEMSYEDCIKQQMESEAQSK----EQENHEDTRQGHADEDEDDNDDDDFDFSILS 646
Query: 653 DSSSLSFSNQPVVNGTESSSISDEGMFED 681
S +FS QP VNGTESS+IS GMFED
Sbjct: 647 SFGS-NFSEQPHVNGTESSTISSGGMFED 674
>gi|356516583|ref|XP_003526973.1| PREDICTED: uncharacterized protein LOC100783002 isoform 1 [Glycine
max]
Length = 676
Score = 993 bits (2566), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/684 (73%), Positives = 570/684 (83%), Gaps = 11/684 (1%)
Query: 1 MQILQSSHLFTFPKPLNPNRPLLHNNNNNRRHVTFPAAATTKSFPPKCFSSDEFPVDETF 60
MQ+LQ+S+LFTFPKPLNP+ H+ R F T PK FSSDEFPVDETF
Sbjct: 1 MQVLQTSYLFTFPKPLNPSPSHFHHRLPPRPPPFFHRRPLTI---PKSFSSDEFPVDETF 57
Query: 61 LEQFGPKDKETEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGDEVALQSPEAVEAF 120
LE FGPKDKETEDEARRRNWIERGWAPWEEILTPEADFARKSLNEG+EV L+SPEA+EAF
Sbjct: 58 LENFGPKDKETEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGEEVPLRSPEAIEAF 117
Query: 121 KMLKPSYRMKKIKEMGITEDEWYKKQFEIKGEIPEKLETVWAAPLLVTHVAPRDWPPRGW 180
KML P+YR KK +EMG+TE+E++ KQFEIKGEIPE L T WA PL+V V PRDWPPRGW
Sbjct: 118 KMLNPNYRKKKREEMGLTEEEFFAKQFEIKGEIPEPLVTTWAGPLVVRLVPPRDWPPRGW 177
Query: 181 EVDRKELEYIREAHKLQNVRVEIGELERKAKFEREGFNFDMYRVFLKQYNQWVAANKDRL 240
VD++EL +IREAHK+Q RV + E+E + + + D YRVFLKQY +WV ANKDRL
Sbjct: 178 RVDQEELAFIREAHKVQARRVRLEEVESGVRTDTDDVGLDRYRVFLKQYKEWVEANKDRL 237
Query: 241 EEESYKYDQDYYPGRRKRGKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYD 300
EEESYK DQDYYPGRRKRGKDY+EGMYELPFYYPGQIC GKVT +HLYQGAFVDIGGV+D
Sbjct: 238 EEESYKQDQDYYPGRRKRGKDYKEGMYELPFYYPGQICVGKVTMLHLYQGAFVDIGGVHD 297
Query: 301 GWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPNIDHLIFNRFDFA 360
GWVPIK NDWYW+RHHIKVGMHVIVEI AKRDPYRFRFPIE+RFV PNIDHLIFN+FDF
Sbjct: 298 GWVPIKNNDWYWLRHHIKVGMHVIVEITAKRDPYRFRFPIELRFVDPNIDHLIFNKFDFP 357
Query: 361 PIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNAEQLILDD 420
PIFHRDED N DE+RRDCGRPPVPRK PG KPEEE LLS HPYV+KLWQI+ AEQ+ILDD
Sbjct: 358 PIFHRDEDTNEDEIRRDCGRPPVPRKDPGDKPEEEPLLSNHPYVEKLWQINVAEQMILDD 417
Query: 421 MEANPDKYKGKKLSELTDDEEFDDENSVEYTKVNYKKALLAKIILKTSVKELDLEAALAE 480
M NPDKY+GKKLS+L D+E+FD++N+VEYTKV YK L + LKTSVKELDLEAALAE
Sbjct: 418 MAINPDKYEGKKLSDLVDEEDFDEQNAVEYTKVQYKNTTLPQTTLKTSVKELDLEAALAE 477
Query: 481 REHHNKLQREAKERGEQYKVYKLRRNFEMDEYNFIHWRRSLEEREALIRDISCRQALGLP 540
RE H KL++EA +RGE+YK+ KLRRN EMDEY+++HWRRS EEREAL RDISCR+ALGLP
Sbjct: 478 RELHVKLRKEAADRGEKYKITKLRRNVEMDEYDYMHWRRSFEEREALTRDISCRKALGLP 537
Query: 541 LEEPGRYKEDSFFGKDEYDPSNPLYRYDYWGEPKNSEKSLQERMRDAHNKSIVGKGMVWY 600
LEEPGRY + SFFGKD+YDP++PLYRYDYWGEPKNSEKS+QERM D HNK IVGKG VWY
Sbjct: 538 LEEPGRYMDASFFGKDQYDPTSPLYRYDYWGEPKNSEKSMQERMTDLHNKKIVGKGNVWY 597
Query: 601 EMSYDDVIKQKMQREARSKCVTPEEVEEEDSTSGHG---NGDDDDDGDFDYSILSDSSSL 657
EMSY+D I+Q+M+ EA+SK E+ +ED+ G D+DDD DFD+SILS S
Sbjct: 598 EMSYEDCIQQQMESEAQSK----EQENDEDTRQGQADEDEDDEDDDDDFDFSILSSFGS- 652
Query: 658 SFSNQPVVNGTESSSISDEGMFED 681
+FS+QP VNGTESS+IS EGMFED
Sbjct: 653 NFSDQPHVNGTESSTISGEGMFED 676
>gi|356516585|ref|XP_003526974.1| PREDICTED: uncharacterized protein LOC100783002 isoform 2 [Glycine
max]
Length = 705
Score = 978 bits (2529), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/713 (70%), Positives = 570/713 (79%), Gaps = 40/713 (5%)
Query: 1 MQILQSSHLFTFPKPLNPNRPLLHNNNNNRRHVTFPAAATTKSFPPKCFSSDEFPVDETF 60
MQ+LQ+S+LFTFPKPLNP+ H+ R F T PK FSSDEFPVDETF
Sbjct: 1 MQVLQTSYLFTFPKPLNPSPSHFHHRLPPRPPPFFHRRPLTI---PKSFSSDEFPVDETF 57
Query: 61 LEQFGPKDKETEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGDEVALQSPEAVEAF 120
LE FGPKDKETEDEARRRNWIERGWAPWEEILTPEADFARKSLNEG+EV L+SPEA+EAF
Sbjct: 58 LENFGPKDKETEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGEEVPLRSPEAIEAF 117
Query: 121 KMLKPSYRMKKIKEMGITEDEWYKKQFEIKGEIPEKLETVWAAPLLVTHVAPRDWPPRGW 180
KML P+YR KK +EMG+TE+E++ KQFEIKGEIPE L T WA PL+V V PRDWPPRGW
Sbjct: 118 KMLNPNYRKKKREEMGLTEEEFFAKQFEIKGEIPEPLVTTWAGPLVVRLVPPRDWPPRGW 177
Query: 181 EVDRKELEYIREAHKLQNVRVEIGELERKAKFEREGFNFDMYRVFLKQYNQWVAANKDRL 240
VD++EL +IREAHK+Q RV + E+E + + + D YRVFLKQY +WV ANKDRL
Sbjct: 178 RVDQEELAFIREAHKVQARRVRLEEVESGVRTDTDDVGLDRYRVFLKQYKEWVEANKDRL 237
Query: 241 EEESYKYDQDYYPGRRKRGKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYD 300
EEESYK DQDYYPGRRKRGKDY+EGMYELPFYYPGQIC GKVT +HLYQGAFVDIGGV+D
Sbjct: 238 EEESYKQDQDYYPGRRKRGKDYKEGMYELPFYYPGQICVGKVTMLHLYQGAFVDIGGVHD 297
Query: 301 GWVPIKGNDWYWIRHHIKVGMHVIVEIL-----------------------------AKR 331
GWVPIK NDWYW+RHHIKVGMHVIVEI AKR
Sbjct: 298 GWVPIKNNDWYWLRHHIKVGMHVIVEITVMLVSMISVFRHKWISFTICSLIYIFVLQAKR 357
Query: 332 DPYRFRFPIEMRFVQPNIDHLIFNRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVK 391
DPYRFRFPIE+RFV PNIDHLIFN+FDF PIFHRDED N DE+RRDCGRPPVPRK PG K
Sbjct: 358 DPYRFRFPIELRFVDPNIDHLIFNKFDFPPIFHRDEDTNEDEIRRDCGRPPVPRKDPGDK 417
Query: 392 PEEEGLLSTHPYVDKLWQIHNAEQLILDDMEANPDKYKGKKLSELTDDEEFDDENSVEYT 451
PEEE LLS HPYV+KLWQI+ AEQ+ILDDM NPDKY+GKKLS+L D+E+FD++N+VEYT
Sbjct: 418 PEEEPLLSNHPYVEKLWQINVAEQMILDDMAINPDKYEGKKLSDLVDEEDFDEQNAVEYT 477
Query: 452 KVNYKKALLAKIILKTSVKELDLEAALAEREHHNKLQREAKERGEQYKVYKLRRNFEMDE 511
KV YK L + LKTSVKELDLEAALAERE H KL++EA +RGE+YK+ KLRRN EMDE
Sbjct: 478 KVQYKNTTLPQTTLKTSVKELDLEAALAERELHVKLRKEAADRGEKYKITKLRRNVEMDE 537
Query: 512 YNFIHWRRSLEEREALIRDISCRQALGLPLEEPGRYKEDSFFGKDEYDPSNPLYRYDYWG 571
Y+++HWRRS EEREAL RDISCR+ALGLPLEEPGRY + SFFGKD+YDP++PLYRYDYWG
Sbjct: 538 YDYMHWRRSFEEREALTRDISCRKALGLPLEEPGRYMDASFFGKDQYDPTSPLYRYDYWG 597
Query: 572 EPKNSEKSLQERMRDAHNKSIVGKGMVWYEMSYDDVIKQKMQREARSKCVTPEEVEEEDS 631
EPKNSEKS+QERM D HNK IVGKG VWYEMSY+D I+Q+M+ EA+SK E+ +ED+
Sbjct: 598 EPKNSEKSMQERMTDLHNKKIVGKGNVWYEMSYEDCIQQQMESEAQSK----EQENDEDT 653
Query: 632 TSGHG---NGDDDDDGDFDYSILSDSSSLSFSNQPVVNGTESSSISDEGMFED 681
G D+DDD DFD+SILS S +FS+QP VNGTESS+IS EGMFED
Sbjct: 654 RQGQADEDEDDEDDDDDFDFSILSSFGS-NFSDQPHVNGTESSTISGEGMFED 705
>gi|295322838|gb|ADG01868.1| plastid RNA-binding protein [Nicotiana benthamiana]
Length = 680
Score = 971 bits (2509), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/651 (75%), Positives = 556/651 (85%), Gaps = 7/651 (1%)
Query: 35 FPAAATTKSFPPK--CFSSDEFPV--DETFLEQFGPKDKETEDEARRRNWIERGWAPWEE 90
FP + + S P CFSSDEFPV D+ FLE FGPK++E+E+EARR+NW++RGWAPWEE
Sbjct: 33 FPCSLSKPSRPLTLHCFSSDEFPVGDDDAFLEAFGPKERESEEEARRKNWVDRGWAPWEE 92
Query: 91 ILTPEADFARKSLNEGDEVALQSPEAVEAFKMLKPSYRMKKIKEMGITEDEWYKKQFEIK 150
IL+PEA+FARKSLNEG+EVALQSPEA+EAFKML P+YR KKI EMGITEDE+Y KQFEI+
Sbjct: 93 ILSPEANFARKSLNEGEEVALQSPEAIEAFKMLSPNYRKKKISEMGITEDEYYAKQFEIR 152
Query: 151 GEIPEKLETVWAAPLLVTHVAPRDWPPRGWEVDRKELEYIREAHKLQNVRVEIGELERKA 210
GEIPE L T+WA PL+V HV PRDWPPRGWEVD++ELE+IREAHKLQ VRV+ ++E
Sbjct: 153 GEIPEPLSTMWAGPLVVCHVPPRDWPPRGWEVDKRELEFIREAHKLQAVRVDYDKVEEMV 212
Query: 211 KFEREGFNFDMYRVFLKQYNQWVAANKDRLEEESYKYDQDYYPGRRKRGKDYEEGMYELP 270
K E + D Y++FLKQYN+WVAANKDRLE+ESYKYDQDYYPGRRKRGKDY++GMYELP
Sbjct: 213 KMETDDMGLDRYKMFLKQYNEWVAANKDRLEQESYKYDQDYYPGRRKRGKDYQDGMYELP 272
Query: 271 FYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAK 330
FYYPGQIC GKVT +HLYQGAFVDIGGV+DGWVPIK NDWYWIRHHIKVGMHVIVEILAK
Sbjct: 273 FYYPGQICAGKVTAIHLYQGAFVDIGGVHDGWVPIKRNDWYWIRHHIKVGMHVIVEILAK 332
Query: 331 RDPYRFRFPIEMRFVQPNIDHLIFNRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGV 390
RDPYRFRFPIEMRF+ PNIDHLIFNRFDFAPIFHRDED N DELRRDCGR P+PRK PGV
Sbjct: 333 RDPYRFRFPIEMRFIDPNIDHLIFNRFDFAPIFHRDEDTNLDELRRDCGRQPLPRKDPGV 392
Query: 391 KPEEEGLLSTHPYVDKLWQIHNAEQLILDDMEANPDKYKGKKLSELTDDEEFDDENSVEY 450
K EEE LLS HPYV+KLWQIHNAEQ+ILDDMEANP KYKGK L+ELTDDEEFD+EN +EY
Sbjct: 393 KVEEEPLLSNHPYVEKLWQIHNAEQMILDDMEANPVKYKGKNLTELTDDEEFDEENRIEY 452
Query: 451 TKVNYKKALLAKIILKTSVKELDLEAALAEREHHNKLQREAKERGEQYKVYKLRRNFEMD 510
+K YKKALL K+I K SVKELDLEA ER+HHNKL+ EA+ERGE YK+ KLRRN EMD
Sbjct: 453 SKAYYKKALLPKMITKVSVKELDLEAVFTERQHHNKLRMEAQERGEAYKIPKLRRNIEMD 512
Query: 511 EYNFIHWRRSLEEREALIRDISCRQALGLPLEEPGRYKEDSFFGKDEYDPSNPLYRYDYW 570
EY+FIHWRRSLEEREAL+RDIS RQALGLPLEEPGRY + S F KD+YDP +PLYRYDYW
Sbjct: 513 EYDFIHWRRSLEEREALLRDISGRQALGLPLEEPGRYVDPSAFEKDQYDPDSPLYRYDYW 572
Query: 571 GEPKNSEKSLQERMRDAHNKSIVGKGMVWYEMSYDDVIKQKMQREARSKCVTPEEVEEED 630
GEPKNSEKS QERM DAHNKSIVGKG VWYEM+Y+D +K ++Q EA+ + V E+ D
Sbjct: 573 GEPKNSEKSKQERMTDAHNKSIVGKGTVWYEMAYEDAVKGRIQMEAQ-RIVRELCDEDSD 631
Query: 631 STSGHGNGDDDDDGDFDYSILSDSSSLSFSNQPVVNGTESSSISDEGMFED 681
S + DDDD+ DFDYSIL D S+ + SNQP VNGTE S +SDEGMFED
Sbjct: 632 SDEVGTDDDDDDEEDFDYSILGDPSA-NVSNQPYVNGTE-SRLSDEGMFED 680
>gi|297816052|ref|XP_002875909.1| PDE312/PTAC10 [Arabidopsis lyrata subsp. lyrata]
gi|297321747|gb|EFH52168.1| PDE312/PTAC10 [Arabidopsis lyrata subsp. lyrata]
Length = 675
Score = 964 bits (2493), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/676 (71%), Positives = 549/676 (81%), Gaps = 12/676 (1%)
Query: 1 MQILQSSHLFTFPKPLNPNRPLLHNNNNNRRHVTFPAAATTKSFPPKC--FSSDEFPVDE 58
MQI Q+ FTFP P NPN F +S P C FSSDEFPVDE
Sbjct: 1 MQICQTKLNFTFPNPTNPN-----FCKPKSLSAGFQWLQPRRSTLPPCRGFSSDEFPVDE 55
Query: 59 TFLEQFGPKDKETEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGDEVALQSPEAVE 118
TFLE+FGPKDK+TEDEARRRNWIERGWAPWEEILTPEADFARKSLNEG+EV LQSPEA+E
Sbjct: 56 TFLEKFGPKDKDTEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGEEVPLQSPEAIE 115
Query: 119 AFKMLKPSYRMKKIKEMGITEDEWYKKQFEIKGEIPEKLETVWAAPLLVTHVAPRDWPPR 178
AFKML+PSYR KKIKEMGITEDEWY KQFEI+G+ P LET WA P+++ + PRDWPPR
Sbjct: 116 AFKMLRPSYRKKKIKEMGITEDEWYAKQFEIRGDKPPPLETSWAGPMVLRQIPPRDWPPR 175
Query: 179 GWEVDRKELEYIREAHKLQNVRVEIGELERKAKFEREG----FNFDMYRVFLKQYNQWVA 234
GWEVDRKELE+IREAHKL RV + +L++ + + + ++VFLKQYN+WV
Sbjct: 176 GWEVDRKELEFIREAHKLMAERVWLEDLDKDLRTGEDAAVDKMCLERFKVFLKQYNEWVE 235
Query: 235 ANKDRLEEESYKYDQDYYPGRRKRGKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVD 294
ANKDRLEEESYKYDQD+YPGRRKRGKDYE+GMYELPFYYPG ICEG VTT+HLYQGAFVD
Sbjct: 236 ANKDRLEEESYKYDQDFYPGRRKRGKDYEDGMYELPFYYPGMICEGTVTTLHLYQGAFVD 295
Query: 295 IGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPNIDHLIF 354
IGGV++GWVPIKGNDW+WIRH IKVGMHVIVEI AKRDPYRFRFP+E+RFV PNIDH+IF
Sbjct: 296 IGGVHEGWVPIKGNDWFWIRHFIKVGMHVIVEITAKRDPYRFRFPLELRFVHPNIDHMIF 355
Query: 355 NRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNAE 414
N+FDF PIFHRD D NPDE+RRDCGRPP PRK PG KPEEEGLLS HPYVDKLWQIH AE
Sbjct: 356 NKFDFPPIFHRDGDTNPDEIRRDCGRPPEPRKDPGSKPEEEGLLSDHPYVDKLWQIHVAE 415
Query: 415 QLILDDMEANPDKYKGKKLSELTDDEEFDDENSVEYTKVNYKKALLAKIILKTSVKELDL 474
Q+IL D EANP KY+GKKLSEL+DDE FD++ +EY + YKK L K+ILKTSVKELDL
Sbjct: 416 QMILGDYEANPAKYEGKKLSELSDDEGFDEQKDIEYGEAYYKKTKLPKVILKTSVKELDL 475
Query: 475 EAALAEREHHNKLQREAKERGEQYKVYKLRRNFEMDEYNFIHWRRSLEEREALIRDISCR 534
+AAL ER+HHNKL EAK RGE YK+ KLRRN EMDEY+F+HWRRSLEEREAL+RDIS R
Sbjct: 476 DAALTERQHHNKLMMEAKSRGEGYKIDKLRRNIEMDEYDFLHWRRSLEEREALLRDISSR 535
Query: 535 QALGLPLEEPGRYKEDSFFGKDEYDPSNPLYRYDYWGEPKNSEKSLQERMRDAHNKSIVG 594
QALGLPLEEPGRYK SFFGKD+YDP++ LY+YDYWGEPKNSE S QERM+DAHNKSIVG
Sbjct: 536 QALGLPLEEPGRYKPGSFFGKDQYDPTSALYQYDYWGEPKNSEISKQERMKDAHNKSIVG 595
Query: 595 KGMVWYEMSYDDVIKQKMQREARSKCVTPEEVEEEDSTSGHGNGDDDDDGDFDYSILSDS 654
KG VWY+MSYDD IKQK+++ + +E E E + DDDD DFDYSILSD
Sbjct: 596 KGNVWYDMSYDDAIKQKIEKRKEGSTLASQEEEIESEEEEDDDDDDDDFDDFDYSILSDE 655
Query: 655 SSLSFS-NQPVVNGTE 669
SS+ +S QP+VNGT+
Sbjct: 656 SSIGYSEQQPLVNGTQ 671
>gi|42565717|ref|NP_190419.3| CONSTANS interacting protein 5-like protein [Arabidopsis thaliana]
gi|332644902|gb|AEE78423.1| CONSTANS interacting protein 5-like protein [Arabidopsis thaliana]
Length = 668
Score = 953 bits (2464), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/676 (70%), Positives = 545/676 (80%), Gaps = 19/676 (2%)
Query: 1 MQILQSSHLFTFPKPLNPN--RPLLHNNNNNRRHVTFPAAATTKSFPPKCFSSDEFPVDE 58
MQI Q+ FTFP P NPN +P + RR P + FSSDEFPVDE
Sbjct: 1 MQICQTKLNFTFPNPTNPNFCKPKALQWSPPRRISLLPC---------RGFSSDEFPVDE 51
Query: 59 TFLEQFGPKDKETEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGDEVALQSPEAVE 118
TFLE+FGPKDK+TEDEARRRNWIERGWAPWEEILTPEADFARKSLNEG+EV LQSPEA+E
Sbjct: 52 TFLEKFGPKDKDTEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGEEVPLQSPEAIE 111
Query: 119 AFKMLKPSYRMKKIKEMGITEDEWYKKQFEIKGEIPEKLETVWAAPLLVTHVAPRDWPPR 178
AFKML+PSYR KKIKEMGITEDEWY KQFEI+G+ P LET WA P+++ + PRDWPPR
Sbjct: 112 AFKMLRPSYRKKKIKEMGITEDEWYAKQFEIRGDKPPPLETSWAGPMVLRQIPPRDWPPR 171
Query: 179 GWEVDRKELEYIREAHKLQNVRVEIGELERKAKFEREG----FNFDMYRVFLKQYNQWVA 234
GWEVDRKELE+IREAHKL RV + +L++ + + + ++VFLKQY +WV
Sbjct: 172 GWEVDRKELEFIREAHKLMAERVWLEDLDKDLRVGEDATVDKMCLERFKVFLKQYKEWVE 231
Query: 235 ANKDRLEEESYKYDQDYYPGRRKRGKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVD 294
NKDRLEEESYK DQD+YPGRRKRGKDYE+GMYELPFYYPG +CEG VTT+HLYQGAFVD
Sbjct: 232 DNKDRLEEESYKLDQDFYPGRRKRGKDYEDGMYELPFYYPGMVCEGTVTTLHLYQGAFVD 291
Query: 295 IGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPNIDHLIF 354
IGGV++GWVPIKGNDW+WIRH IKVGMHVIVEI AKRDPYRFRFP+E+RFV PNIDH+IF
Sbjct: 292 IGGVHEGWVPIKGNDWFWIRHFIKVGMHVIVEITAKRDPYRFRFPLELRFVHPNIDHMIF 351
Query: 355 NRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNAE 414
N+FDF PIFHRD D NPDE+RRDCGRPP PRK PG KPEEEGLLS HPYVDKLWQIH AE
Sbjct: 352 NKFDFPPIFHRDGDTNPDEIRRDCGRPPEPRKDPGSKPEEEGLLSDHPYVDKLWQIHVAE 411
Query: 415 QLILDDMEANPDKYKGKKLSELTDDEEFDDENSVEYTKVNYKKALLAKIILKTSVKELDL 474
Q+IL D EANP KY+GKKLSEL+DDE+FD++ +EY + YKK L K+ILKTSVKELDL
Sbjct: 412 QMILGDYEANPAKYEGKKLSELSDDEDFDEQKDIEYGEAYYKKTKLPKVILKTSVKELDL 471
Query: 475 EAALAEREHHNKLQREAKERGEQYKVYKLRRNFEMDEYNFIHWRRSLEEREALIRDISCR 534
EAAL ER+HHNKL EAK RGE YK+ KLRRN EMDEY+F+HWRRSLEEREAL+RDIS R
Sbjct: 472 EAALTERQHHNKLMMEAKARGEGYKIDKLRRNIEMDEYDFLHWRRSLEEREALLRDISSR 531
Query: 535 QALGLPLEEPGRYKEDSFFGKDEYDPSNPLYRYDYWGEPKNSEKSLQERMRDAHNKSIVG 594
QALGLPLEEPGRYK SFFGKD+YDP++ LY+YDYWGEPKNSE S QERM+DAHNKSIVG
Sbjct: 532 QALGLPLEEPGRYKPGSFFGKDQYDPTSALYQYDYWGEPKNSEISKQERMKDAHNKSIVG 591
Query: 595 KGMVWYEMSYDDVIKQKMQREARSKCVTPEEVEEEDSTSGHGNGDDDDDGDFDYSILSDS 654
KG VWY+MSYDD IKQ +++ + +E E E + D DD DYSILSD
Sbjct: 592 KGNVWYDMSYDDAIKQTIEKRKEGSTLASQEEETESEEEEEDDDDFDDF---DYSILSDE 648
Query: 655 SSLSFS-NQPVVNGTE 669
SS+ +S QP+VNGT+
Sbjct: 649 SSIGYSEQQPLVNGTQ 664
>gi|45544875|gb|AAS67373.1| CONSTANS interacting protein 5, partial [Solanum lycopersicum]
Length = 600
Score = 942 bits (2434), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/604 (76%), Positives = 523/604 (86%), Gaps = 5/604 (0%)
Query: 79 NWIERGWAPWEEILTPEADFARKSLNEGDEVALQSPEAVEAFKMLKPSYRMKKIKEMGIT 138
NW++RGWAPWEEIL+PEADFARKSLNEG+EVALQSPEA+EAF+ML P+YR KKI+EMGIT
Sbjct: 1 NWVDRGWAPWEEILSPEADFARKSLNEGEEVALQSPEAIEAFRMLSPNYRKKKIEEMGIT 60
Query: 139 EDEWYKKQFEIKGEIPEKLETVWAAPLLVTHVAPRDWPPRGWEVDRKELEYIREAHKLQN 198
EDE+Y KQFEIKG+IPE LET WA PL+V HV PRDWPPRGWEVD+KELE+IREAHK+Q
Sbjct: 61 EDEYYAKQFEIKGDIPEPLETTWAGPLVVRHVPPRDWPPRGWEVDKKELEFIREAHKMQA 120
Query: 199 VRVEIGELERKAKFEREGFNFDMYRVFLKQYNQWVAANKDRLEEESYKYDQDYYPGRRKR 258
VRV+ ++E E + + + Y+VFLKQYN+WVAANKDRLEEESYKYDQDYYPGRRKR
Sbjct: 121 VRVDYDKVEEMVNTETDDMSLERYKVFLKQYNEWVAANKDRLEEESYKYDQDYYPGRRKR 180
Query: 259 GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIK 318
GKDY++GMYELPFYYPGQIC GKVT +HLYQGAFVDIGGV+DGWVPIK NDWYWIRHHIK
Sbjct: 181 GKDYQDGMYELPFYYPGQICAGKVTAIHLYQGAFVDIGGVHDGWVPIKRNDWYWIRHHIK 240
Query: 319 VGMHVIVEILAKRDPYRFRFPIEMRFVQPNIDHLIFNRFDFAPIFHRDEDKNPDELRRDC 378
VGMHV+VEILAKRDPYRFRFPIEMRFV PNIDHLIFNRFDF PIFHR+ED N DELRRDC
Sbjct: 241 VGMHVMVEILAKRDPYRFRFPIEMRFVDPNIDHLIFNRFDFPPIFHREEDTNLDELRRDC 300
Query: 379 GRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNAEQLILDDMEANPDKYKGKKLSELTD 438
GR P+PRK PGVK EEE LLS HPYVDKLWQIHNAEQ+ILDD+EANP KY+GK LSEL D
Sbjct: 301 GRQPIPRKDPGVKVEEEPLLSNHPYVDKLWQIHNAEQMILDDLEANPGKYEGKNLSELAD 360
Query: 439 DEEFDDENSVEYTKVNYKKALLAKIILKTSVKELDLEAALAEREHHNKLQREAKERGEQY 498
+E+FD+ENS EY+K YKKALL K+I K SV+ELDLEAALAER+HHN+L+ EA ERGE Y
Sbjct: 361 EEDFDEENSTEYSKAYYKKALLTKMITKVSVRELDLEAALAERQHHNELRIEALERGEVY 420
Query: 499 KVYKLRRNFEMDEYNFIHWRRSLEEREALIRDISCRQALGLPLEEPGRYKEDSFFGKDEY 558
K+ KLRRN EMDEY+FIHWRRSLEEREAL+RDISCR+ALGLPLEEPGRY + S KD+Y
Sbjct: 421 KISKLRRNIEMDEYDFIHWRRSLEEREALLRDISCRRALGLPLEEPGRYVDPSAISKDQY 480
Query: 559 DPSNPLYRYDYWGEPKNSEKSLQERMRDAHNKSIVGKGMVWYEMSYDDVIKQKMQREARS 618
DP +PLYRYDYWGEPKNSEKS QERM DAHNKSIVGKG VWYE+SY+D IK++MQ EA+
Sbjct: 481 DPESPLYRYDYWGEPKNSEKSKQERMTDAHNKSIVGKGTVWYELSYEDAIKEQMQMEAQG 540
Query: 619 KCVTPEEVEEEDSTSGHGNG-DDDDDGDFDYSILSDSSSLSFSNQPVVNGTESSSISDEG 677
E+ +EDS S N D+DD+ DFDYSIL D S + NQP VNGTESS +SDEG
Sbjct: 541 FV---RELYDEDSDSDQVNTDDEDDEEDFDYSILGDPSENTI-NQPYVNGTESSQLSDEG 596
Query: 678 MFED 681
MFED
Sbjct: 597 MFED 600
>gi|145332787|ref|NP_001078259.1| CONSTANS interacting protein 5-like protein [Arabidopsis thaliana]
gi|110738909|dbj|BAF01376.1| hypothetical protein [Arabidopsis thaliana]
gi|332644903|gb|AEE78424.1| CONSTANS interacting protein 5-like protein [Arabidopsis thaliana]
Length = 697
Score = 937 bits (2422), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/705 (67%), Positives = 545/705 (77%), Gaps = 48/705 (6%)
Query: 1 MQILQSSHLFTFPKPLNPN--RPLLHNNNNNRRHVTFPAAATTKSFPPKCFSSDEFPVDE 58
MQI Q+ FTFP P NPN +P + RR P + FSSDEFPVDE
Sbjct: 1 MQICQTKLNFTFPNPTNPNFCKPKALQWSPPRRISLLPC---------RGFSSDEFPVDE 51
Query: 59 TFLEQFGPKDKETEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGDEVALQSPEAVE 118
TFLE+FGPKDK+TEDEARRRNWIERGWAPWEEILTPEADFARKSLNEG+EV LQSPEA+E
Sbjct: 52 TFLEKFGPKDKDTEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGEEVPLQSPEAIE 111
Query: 119 AFKMLKPSYRMKKIKEMGITEDEWYKKQFEIKGEIPEKLETVWAAPLLVTHVAPRDWPPR 178
AFKML+PSYR KKIKEMGITEDEWY KQFEI+G+ P LET WA P+++ + PRDWPPR
Sbjct: 112 AFKMLRPSYRKKKIKEMGITEDEWYAKQFEIRGDKPPPLETSWAGPMVLRQIPPRDWPPR 171
Query: 179 GWEVDRKELEYIREAHKLQNVRVEIGELERKAKFEREG----FNFDMYRVFLKQYNQWVA 234
GWEVDRKELE+IREAHKL RV + +L++ + + + ++VFLKQY +WV
Sbjct: 172 GWEVDRKELEFIREAHKLMAERVWLEDLDKDLRVGEDATVDKMCLERFKVFLKQYKEWVE 231
Query: 235 ANKDRLEEESYKYDQDYYPGRRKRGKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVD 294
NKDRLEEESYK DQD+YPGRRKRGKDYE+GMYELPFYYPG +CEG VTT+HLYQGAFVD
Sbjct: 232 DNKDRLEEESYKLDQDFYPGRRKRGKDYEDGMYELPFYYPGMVCEGTVTTLHLYQGAFVD 291
Query: 295 IGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEIL-------------------------- 328
IGGV++GWVPIKGNDW+WIRH IKVGMHVIVEI
Sbjct: 292 IGGVHEGWVPIKGNDWFWIRHFIKVGMHVIVEITVILRHIFFFRIYKNLNGNCFILLFLL 351
Query: 329 ---AKRDPYRFRFPIEMRFVQPNIDHLIFNRFDFAPIFHRDEDKNPDELRRDCGRPPVPR 385
AKRDPYRFRFP+E+RFV PNIDH+IFN+FDF PIFHRD D NPDE+RRDCGRPP PR
Sbjct: 352 FFQAKRDPYRFRFPLELRFVHPNIDHMIFNKFDFPPIFHRDGDTNPDEIRRDCGRPPEPR 411
Query: 386 KYPGVKPEEEGLLSTHPYVDKLWQIHNAEQLILDDMEANPDKYKGKKLSELTDDEEFDDE 445
K PG KPEEEGLLS HPYVDKLWQIH AEQ+IL D EANP KY+GKKLSEL+DDE+FD++
Sbjct: 412 KDPGSKPEEEGLLSDHPYVDKLWQIHVAEQMILGDYEANPAKYEGKKLSELSDDEDFDEQ 471
Query: 446 NSVEYTKVNYKKALLAKIILKTSVKELDLEAALAEREHHNKLQREAKERGEQYKVYKLRR 505
+EY + YKK L K+ILKTSVKELDLEAAL ER+HHNKL EAK RGE YK+ KLRR
Sbjct: 472 KDIEYGEAYYKKTKLPKVILKTSVKELDLEAALTERQHHNKLMMEAKARGEGYKIDKLRR 531
Query: 506 NFEMDEYNFIHWRRSLEEREALIRDISCRQALGLPLEEPGRYKEDSFFGKDEYDPSNPLY 565
N EMDEY+F+HWRRSLEEREAL+RDIS RQALGLPLEEPGRYK SFFGKD+YDP++ LY
Sbjct: 532 NIEMDEYDFLHWRRSLEEREALLRDISSRQALGLPLEEPGRYKPGSFFGKDQYDPTSALY 591
Query: 566 RYDYWGEPKNSEKSLQERMRDAHNKSIVGKGMVWYEMSYDDVIKQKMQREARSKCVTPEE 625
+YDYWGEPKNSE S QERM+DAHNKSIVGKG VWY+MSYDD IKQ +++ + +E
Sbjct: 592 QYDYWGEPKNSEISKQERMKDAHNKSIVGKGNVWYDMSYDDAIKQTIEKRKEGSTLASQE 651
Query: 626 VEEEDSTSGHGNGDDDDDGDFDYSILSDSSSLSFS-NQPVVNGTE 669
E E + D DD DYSILSD SS+ +S QP+VNGT+
Sbjct: 652 EETESEEEEEDDDDFDDF---DYSILSDESSIGYSEQQPLVNGTQ 693
>gi|297734373|emb|CBI15620.3| unnamed protein product [Vitis vinifera]
Length = 555
Score = 865 bits (2234), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/560 (77%), Positives = 482/560 (86%), Gaps = 5/560 (0%)
Query: 122 MLKPSYRMKKIKEMGITEDEWYKKQFEIKGEIPEKLETVWAAPLLVTHVAPRDWPPRGWE 181
ML P YR KK++E G+TEDEWY KQFEIKGEIPE + T W PL+V HV PRDWPPRGWE
Sbjct: 1 MLNPKYRKKKMEESGLTEDEWYAKQFEIKGEIPEPVRTFWDGPLVVRHVPPRDWPPRGWE 60
Query: 182 VDRKELEYIREAHKLQNVRVEIGELERKAKFEREGFNFDMYRVFLKQYNQWVAANKDRLE 241
V+RKEL +IREAHKLQ VRV+ LE A+ + N + Y+ FLKQYN+WV NKDRLE
Sbjct: 61 VNRKELAFIREAHKLQAVRVDPKGLE-SARTNTDDLNLERYKTFLKQYNEWVEHNKDRLE 119
Query: 242 EESYKYDQDYYPGRRKRGKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDG 301
EES++ DQDY+PGRRKRGKDYEEGMYELPFYYPGQIC GKVTT+HLYQGAFVDIGGVYDG
Sbjct: 120 EESFQDDQDYHPGRRKRGKDYEEGMYELPFYYPGQICAGKVTTLHLYQGAFVDIGGVYDG 179
Query: 302 WVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPNIDHLIFNRFDFAP 361
WVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFV PNIDHLIFNRFDF P
Sbjct: 180 WVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVDPNIDHLIFNRFDFPP 239
Query: 362 IFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNAEQLILDDM 421
IFH DED NPDELRRDCGRPP+P+K PG+K EEE LLS HPYVDKLWQIH AEQ+ILDDM
Sbjct: 240 IFHHDEDTNPDELRRDCGRPPIPKKDPGIKVEEEPLLSNHPYVDKLWQIHVAEQMILDDM 299
Query: 422 EANPDKYKGKKLSELTDDEEFDDENSVEYTKVNYKKALLAKIILKTSVKELDLEAALAER 481
E NP KY+GKKL+ELTDDE+FD+ENSVEYTKV YKK+LL K ILKTSVKELDLEAALAER
Sbjct: 300 EVNPHKYEGKKLTELTDDEDFDEENSVEYTKVYYKKSLLPKKILKTSVKELDLEAALAER 359
Query: 482 EHHNKLQREAKERGEQYKVYKLRRNFEMDEYNFIHWRRSLEEREALIRDISCRQALGLPL 541
E+HNKL++EAKERGE+YK+YKLRRN EMDEY+ IHWRRS EEREALIRDISCRQALGLPL
Sbjct: 360 EYHNKLRKEAKERGEEYKIYKLRRNIEMDEYDLIHWRRSFEEREALIRDISCRQALGLPL 419
Query: 542 EEPGRYKEDSFFGKDEYDPSNPLYRYDYWGEPKNSEKSLQERMRDAHNKSIVGKGMVWYE 601
EEPG+ + S+FGK +YDP +PLYRYDYWGEPKNSEKS Q+RM DAHNKSIVGKG VWYE
Sbjct: 420 EEPGKLVDASYFGKGQYDPQHPLYRYDYWGEPKNSEKSKQQRMTDAHNKSIVGKGTVWYE 479
Query: 602 MSYDDVIKQKMQREARSKCVTPEEVEEEDSTSGHGNGDDDDDGDFDYSILSDSSSLSFSN 661
MSY+D IKQ+MQREAR+K + E EE+D T + DDD+ SIL D SS+ +SN
Sbjct: 480 MSYEDAIKQRMQREARAKEMRKEAAEEDDDTEEEDDDDDDEFDF---SILGD-SSVDYSN 535
Query: 662 QPVVNGTESSSISDEGMFED 681
QP+VNGTESS +SDEGMFE+
Sbjct: 536 QPLVNGTESSRMSDEGMFEN 555
>gi|224133876|ref|XP_002321682.1| predicted protein [Populus trichocarpa]
gi|222868678|gb|EEF05809.1| predicted protein [Populus trichocarpa]
Length = 556
Score = 852 bits (2200), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/558 (75%), Positives = 479/558 (85%), Gaps = 4/558 (0%)
Query: 122 MLKPSYRMKKIKEMGITEDEWYKKQFEIKGEIPEKLETVWAAPLLVTHVAPRDWPPRGWE 181
ML PSYR +KIKEMG+TEDEWY KQFEIKGEIP+KLET WA+PL+V VAPRDWPPRGWE
Sbjct: 1 MLSPSYRSQKIKEMGLTEDEWYMKQFEIKGEIPDKLETEWASPLVVRQVAPRDWPPRGWE 60
Query: 182 VDRKELEYIREAHKLQNVRVEIGELERKAKFEREGFNFDMYRVFLKQYNQWVAANKDRLE 241
VDRKELE+IRE HKLQ VRV + +LE ++E + Y+VFLKQY +WV ANKDRLE
Sbjct: 61 VDRKELEFIREGHKLQGVRVNLEDLENGVGVDKENMCLERYKVFLKQYEEWVEANKDRLE 120
Query: 242 EESYKYDQDYYPGRRKRGKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDG 301
EESYK DQDYYPGRRKRGKDY+EGMYELPFYYPGQICEGKVTT+HLYQGAFVD+GGV+DG
Sbjct: 121 EESYKEDQDYYPGRRKRGKDYKEGMYELPFYYPGQICEGKVTTIHLYQGAFVDVGGVHDG 180
Query: 302 WVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPNIDHLIFNRFDFAP 361
W+PIK NDW+WIRHHIKVGMHVIVEILAKRDPYRFRFP+EMRFV PNIDHLIFNRF+F P
Sbjct: 181 WIPIKRNDWFWIRHHIKVGMHVIVEILAKRDPYRFRFPLEMRFVYPNIDHLIFNRFEFPP 240
Query: 362 IFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNAEQLILDDM 421
+FHRDED N DELRRDCGRPPVPR+ P KPEEE LLS HPYVDKLWQIH AEQ ILDD
Sbjct: 241 VFHRDEDTNLDELRRDCGRPPVPRRDPEDKPEEEPLLSNHPYVDKLWQIHVAEQTILDDW 300
Query: 422 EANPDKYKGKKLSELTDDEEFDDENSVEYTKVNYKKALLAKIILKTSVKELDLEAALAER 481
EANP+KYKGK +SELTD+E+FD+ENS+EY + +KK +L K+ILKTSVKELDLEAALAER
Sbjct: 301 EANPEKYKGKMISELTDNEDFDEENSIEYGEAYHKKTVLPKVILKTSVKELDLEAALAER 360
Query: 482 EHHNKLQREAKERGEQYKVYKLRRNFEMDEYNFIHWRRSLEEREALIRDISCRQALGLPL 541
E HNKL+ EAKERGE+YK+ KLRRN EMDEY+ +HWRRS EEREALIRDISCR+ALGLP+
Sbjct: 361 EFHNKLRMEAKERGEKYKITKLRRNIEMDEYDLLHWRRSFEEREALIRDISCRRALGLPV 420
Query: 542 EEPGRYKEDSFFGKDEYDPSNPLYRYDYWGEPKNSEKSLQERMRDAHNKSIVGKGMVWYE 601
EEPGRYK SFFGKD+YDP NPLYRYDYWGEPKNSEKS QERM + HNKSIVGKG VWYE
Sbjct: 421 EEPGRYKPASFFGKDQYDPENPLYRYDYWGEPKNSEKSKQERMTELHNKSIVGKGNVWYE 480
Query: 602 MSYDDVIKQKMQREARSKCVTPEEVEEEDSTSGHGNGDDDDDGDFDYSILSDSSSLSFSN 661
MSYDD I Q+MQREAR+K E+ E+ + + +DDDD D D+++L D + +N
Sbjct: 481 MSYDDAIAQRMQREARAK---EEKQGVEEDSDRDYDDEDDDDDDIDFNLLGD-FGVDLAN 536
Query: 662 QPVVNGTESSSISDEGMF 679
+PVVNGTES+ +SDEGMF
Sbjct: 537 RPVVNGTESAGLSDEGMF 554
>gi|22135912|gb|AAM91538.1| unknown protein [Arabidopsis thaliana]
Length = 554
Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/553 (71%), Positives = 453/553 (81%), Gaps = 8/553 (1%)
Query: 122 MLKPSYRMKKIKEMGITEDEWYKKQFEIKGEIPEKLETVWAAPLLVTHVAPRDWPPRGWE 181
ML+PSYR KKIKEMGITEDEWY KQFEI+G+ P LET WA P+++ + PRDWPPRGWE
Sbjct: 1 MLRPSYRKKKIKEMGITEDEWYAKQFEIRGDKPPPLETSWAGPMVLRQIPPRDWPPRGWE 60
Query: 182 VDRKELEYIREAHKLQNVRVEIGELERKAKFEREG----FNFDMYRVFLKQYNQWVAANK 237
VDRKELE+IREAHKL RV + +L++ + + + ++VFLKQY +WV NK
Sbjct: 61 VDRKELEFIREAHKLMAERVWLEDLDKDLRVGEDATVDKMCLERFKVFLKQYKEWVEDNK 120
Query: 238 DRLEEESYKYDQDYYPGRRKRGKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGG 297
DRLEEESYK DQD+YPGRRKRGKDYE+GMYELPFYYPG +CEG VTT+HLYQGAFVDIGG
Sbjct: 121 DRLEEESYKLDQDFYPGRRKRGKDYEDGMYELPFYYPGMVCEGTVTTLHLYQGAFVDIGG 180
Query: 298 VYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPNIDHLIFNRF 357
V++GWVPIKGNDW+WIRH IKVGMHVIVEI AKRDPYRFRFP+E+RFV PNIDH+IFN+F
Sbjct: 181 VHEGWVPIKGNDWFWIRHFIKVGMHVIVEITAKRDPYRFRFPLELRFVHPNIDHMIFNKF 240
Query: 358 DFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNAEQLI 417
DF PIFHRD D NPDE+RRDCGRPP PRK PG KPEEEGLLS HPYVDKLWQIH AEQ+I
Sbjct: 241 DFPPIFHRDGDTNPDEIRRDCGRPPEPRKDPGSKPEEEGLLSDHPYVDKLWQIHVAEQMI 300
Query: 418 LDDMEANPDKYKGKKLSELTDDEEFDDENSVEYTKVNYKKALLAKIILKTSVKELDLEAA 477
L D EANP KY+GKKLSEL+DDE+FD++ +EY + YKK L K+ILKTSVKELDLEAA
Sbjct: 301 LGDYEANPAKYEGKKLSELSDDEDFDEQKDIEYGEAYYKKTKLPKVILKTSVKELDLEAA 360
Query: 478 LAEREHHNKLQREAKERGEQYKVYKLRRNFEMDEYNFIHWRRSLEEREALIRDISCRQAL 537
L ER+HHNKL EAK RGE YK+ KLRRN EMDEY+F+HWRRSLEEREAL+RDIS RQAL
Sbjct: 361 LTERQHHNKLMMEAKARGEGYKIDKLRRNIEMDEYDFLHWRRSLEEREALLRDISSRQAL 420
Query: 538 GLPLEEPGRYKEDSFFGKDEYDPSNPLYRYDYWGEPKNSEKSLQERMRDAHNKSIVGKGM 597
GLPLEEPGRYK SFFGKD+YDP++ LY+YDYWGEPKNSE S QERM+DAHNKSIVGKG
Sbjct: 421 GLPLEEPGRYKPGSFFGKDQYDPTSALYQYDYWGEPKNSEISKQERMKDAHNKSIVGKGN 480
Query: 598 VWYEMSYDDVIKQKMQREARSKCVTPEEVEEEDSTSGHGNGDDDDDGDFDYSILSDSSSL 657
VWY+MSYDD IKQ +++ + +E E E + D DD DYSILSD SS+
Sbjct: 481 VWYDMSYDDAIKQTIEKRKEGSTLASQEEETESEEEEEDDDDFDDF---DYSILSDESSI 537
Query: 658 SFS-NQPVVNGTE 669
+S QP+VNGT+
Sbjct: 538 GYSEQQPLVNGTQ 550
>gi|255540335|ref|XP_002511232.1| conserved hypothetical protein [Ricinus communis]
gi|223550347|gb|EEF51834.1| conserved hypothetical protein [Ricinus communis]
Length = 501
Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/495 (73%), Positives = 411/495 (83%), Gaps = 13/495 (2%)
Query: 1 MQI--LQSSHLFTFPKPLNPNRPLLHNNNNNRRH-------VTFPAAATTKSFPPKCFSS 51
MQ+ LQS H F+ PKPLNP H + + R +T P + + PPKCFSS
Sbjct: 1 MQVPQLQSPHPFSLPKPLNPTTSCSHRHYHRPRRLYPLFSKITIPPVFSKSAPPPKCFSS 60
Query: 52 DEFPVDETFLEQFG--PKDKETEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGDEV 109
DEFPVDET E G +D E+E RR+NWIERGWAPWEEILTPEADFARKSLNEG+EV
Sbjct: 61 DEFPVDETLAENLGITTRDDAKEEEWRRKNWIERGWAPWEEILTPEADFARKSLNEGEEV 120
Query: 110 ALQSPEAVEAFKMLKPSYRMKKIKEMGITEDEWYKKQFEIKGEIPEKLETVWAAPLLVTH 169
LQSPEA+EAFKML P YR +KIKEMG+TEDEWYKKQFEIKG+IP+ LET+WA PL++ H
Sbjct: 121 PLQSPEAIEAFKMLNPKYRQEKIKEMGLTEDEWYKKQFEIKGDIPDPLETLWAGPLVLRH 180
Query: 170 VAPRDWPPRGWEVDRKELEYIREAHKLQNVRVEIGELERKAKF--EREGFNFDMYRVFLK 227
VAPRDWPPRGWEVDR+ELE+IRE HKL + RV I EL+ K + + E FD Y++FLK
Sbjct: 181 VAPRDWPPRGWEVDRQELEFIREGHKLISERVVIEELDNKREKCDDIETACFDRYKMFLK 240
Query: 228 QYNQWVAANKDRLEEESYKYDQDYYPGRRKRGKDYEEGMYELPFYYPGQICEGKVTTVHL 287
QYN+WV ANKDRLEEESYK+DQD YPGRRKRGK+Y+EGMYELPFYYPGQICEG++TT+HL
Sbjct: 241 QYNEWVDANKDRLEEESYKHDQDDYPGRRKRGKEYKEGMYELPFYYPGQICEGQITTIHL 300
Query: 288 YQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQP 347
YQGAFVD+GGVYDGWVPI+GNDWYWIRHHIKVGMHVIVEIL KRDPYRFRFPIEMRFV P
Sbjct: 301 YQGAFVDVGGVYDGWVPIRGNDWYWIRHHIKVGMHVIVEILGKRDPYRFRFPIEMRFVWP 360
Query: 348 NIDHLIFNRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKL 407
NIDHLIFNRF+F PIFHRDED N DELRRDCGRPPVPRK G KPEEE LLS HPYV+KL
Sbjct: 361 NIDHLIFNRFEFPPIFHRDEDTNLDELRRDCGRPPVPRKDLGTKPEEEALLSNHPYVEKL 420
Query: 408 WQIHNAEQLILDDMEANPDKYKGKKLSELTDDEEFDDENSVEYTKVNYKKALLAKIILKT 467
WQIH AEQ+ILDD EANP+KYK KKLSELTDDE+FD++NS+EYT+ YKK LL K ILK
Sbjct: 421 WQIHVAEQMILDDWEANPEKYKDKKLSELTDDEDFDEQNSIEYTEAYYKKTLLPKTILKQ 480
Query: 468 SVKELDLEAALAERE 482
SVKELDLEAAL ERE
Sbjct: 481 SVKELDLEAALKERE 495
>gi|357126365|ref|XP_003564858.1| PREDICTED: uncharacterized protein LOC100821290 [Brachypodium
distachyon]
Length = 652
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/593 (58%), Positives = 426/593 (71%), Gaps = 22/593 (3%)
Query: 52 DEFPVDET-FLEQFGPKDKETEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGDEVA 110
DE P D+ L K+ E ED ARRR+W+E GWAPWEE+++PE FAR SLNEG+EV
Sbjct: 39 DEIPADDPPVLPSILIKNTEPEDVARRRSWVEHGWAPWEELMSPEVAFARHSLNEGEEVP 98
Query: 111 LQSPEAVEAFKMLKPSYRMKKIKEMGITEDEWYKKQFEIKGEIPEKLETVWAAPLLVTHV 170
L SPE++EAF+ML P+YR K E G Y ++ + PE LET WA L + V
Sbjct: 99 LTSPESLEAFRMLTPAYRDKVESEPG------YIERLVAPRQTPEPLETTWAGELPLRLV 152
Query: 171 APRDWPPRGWEVDRKELEYIREAHKLQNVRVEIGELE-------RKAKFEREGFNFDMYR 223
PRDWPP GWEVDR ELE+IREAH+ + R+++ RK + + D Y+
Sbjct: 153 PPRDWPPPGWEVDRDELEFIREAHRAASERLDMAAAAAGGVTNVRKVEDGPQDLALDRYK 212
Query: 224 VFLKQYNQWVAANKDRLEEESYKYDQDYYPGRRKRGKDYEEGMYELPFYYPGQICEGKVT 283
VFLKQY +WV AN+DRLEEESYK+DQDYYPGRRKRGKDY E M ELPF+YPGQIC G+V
Sbjct: 213 VFLKQYKEWVEANRDRLEEESYKFDQDYYPGRRKRGKDYREDMLELPFFYPGQICRGQVI 272
Query: 284 TVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMR 343
++HL+QGAFVDIGGV+DGWVPIKGNDWYWIRHH+K GM V VEILAKRDPYRFRFP+EMR
Sbjct: 273 SIHLHQGAFVDIGGVHDGWVPIKGNDWYWIRHHVKPGMKVYVEILAKRDPYRFRFPLEMR 332
Query: 344 FVQPNIDHLIFNRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPY 403
V PNIDHLIFNRFDF PIFHR ED N ++L R+ GRPP+PRK P E+E L+S HP+
Sbjct: 333 LVYPNIDHLIFNRFDFPPIFHRKEDTNEEQLWREGGRPPIPRKKPLKDMEKEPLVSDHPF 392
Query: 404 VDKLWQIHNAEQLILDDMEANPDKYKGKKLSELTDDEEFDDENSVEYTKVNYKKALLAKI 463
V+ LW+ HNAEQ+ILD + NPDK+K D FD++N VEYT+ K+ L
Sbjct: 393 VETLWEWHNAEQMILDHEDENPDKFKDTTYESTVDMSSFDEDNRVEYTEARVKETTLKMK 452
Query: 464 ILKTSVKELDLEAALAEREHHNKLQREAKERGEQYKVYKLRRNFEMDEYNFIHWRRSLEE 523
+L ++KELDLEAA AER+ KL+ EA+ERGE+YK+ KLRRN EMDEY+ + WRRS EE
Sbjct: 453 VLNVNIKELDLEAARAERQAIKKLKVEAEERGEEYKIGKLRRNKEMDEYDLLQWRRSFEE 512
Query: 524 REALIRDISCRQALGLPLEEPGRY--KEDSFFGKDEYDPSNPLYRYDYWGEPKNSEKSLQ 581
REAL+RDI CR+ALGLP+EEPGRY E +GKD YDPS P+YRYDYWGEPKN+EK+
Sbjct: 513 REALLRDICCRKALGLPIEEPGRYDVDETEVYGKDYYDPSKPMYRYDYWGEPKNTEKTKL 572
Query: 582 ERMRDAHNKSIVGKGMVWYEMSYDDVIKQKM------QREARSKCVTPEEVEE 628
ER + HN+ IVG W ++SYDD +++K+ R + K + P+E EE
Sbjct: 573 ERDVELHNQQIVGDAKKWCDISYDDYVRKKVRAEAAEARARQMKALEPQEEEE 625
>gi|20161610|dbj|BAB90530.1| B1065G12.12 [Oryza sativa Japonica Group]
Length = 798
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/618 (56%), Positives = 435/618 (70%), Gaps = 26/618 (4%)
Query: 52 DEFPVDET-FLEQFGPKDKETEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGDEVA 110
DE P D+ + K+ E ED ARRR+W+E GWAPWEEI+TPE FAR SLNEG+EV
Sbjct: 185 DETPADDPPVIPSILVKNTEPEDVARRRSWVEHGWAPWEEIMTPEVAFARHSLNEGEEVP 244
Query: 111 LQSPEAVEAFKMLKPSYRMKKIKEMGITEDEWYKKQFEIKGEIPEKLETVWAAPLLVTHV 170
LQ+PE+ EAF+ML P+YR K E G Y+++ + PE LET WA L + V
Sbjct: 245 LQTPESQEAFRMLTPAYREKVESEPG------YEERLFATRDTPEPLETSWAGELPLRLV 298
Query: 171 APRDWPPRGWEVDRKELEYIREAHKLQNVRVEIGELERKA-----KFER--EGFNFDMYR 223
PRDWPP GWEVD ELE+IREAH+ R+++ + K K E + D Y+
Sbjct: 299 PPRDWPPPGWEVDPGELEFIREAHREFTERLDMAAVAAKGVTHVDKVENAPDDLGLDRYK 358
Query: 224 VFLKQYNQWVAANKDRLEEESYKYDQDYYPGRRKRGKDYEEGMYELPFYYPGQICEGKVT 283
+FLKQY +WV AN+DRLEEESYK+DQDYYPGRRKRG+DY+E M ELPF+YPGQIC G+V
Sbjct: 359 MFLKQYKEWVEANRDRLEEESYKFDQDYYPGRRKRGEDYKEDMLELPFFYPGQICRGRVI 418
Query: 284 TVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMR 343
+VHLYQGAFVDIG V+DGWVPIKGNDWYWIRHHI+ GM V VEILAKRDPYRFRFP+EMR
Sbjct: 419 SVHLYQGAFVDIGCVHDGWVPIKGNDWYWIRHHIRPGMEVHVEILAKRDPYRFRFPLEMR 478
Query: 344 FVQPNIDHLIFNRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPY 403
FV PNIDHLIFNRFD+ PIFHR ED NP++L R+ GRPP+PRK P E+E L+S HP+
Sbjct: 479 FVYPNIDHLIFNRFDYPPIFHRKEDTNPEQLWREGGRPPIPRKKPLKDMEKEPLVSDHPF 538
Query: 404 VDKLWQIHNAEQLILDDMEANPDKYKGKKLSELTDDEEFDDENSVEYTKVNYKKALLAKI 463
V+ LW HNAEQ+ILD E NPDK+K D +EN V++T+ +K LL K
Sbjct: 539 VETLWLWHNAEQMILDHEEENPDKFKDTTYESTVDSSIVHEENRVQHTEGYFKDTLLKKE 598
Query: 464 ILKTSVKELDLEAALAEREHHNKLQREAKERGEQYKVYKLRRNFEMDEYNFIHWRRSLEE 523
++ +KELDL+AA AER+ KL++EA+ERGE+YKV KLRRN EMDEY+ + WRRS EE
Sbjct: 599 VVNIDIKELDLDAARAERQLIKKLRKEAEERGEEYKVGKLRRNKEMDEYDLMQWRRSFEE 658
Query: 524 REALIRDISCRQALGLPLEEPGRY--KEDSFFGKDEYDPSNPLYRYDYWGEPKNSEKSLQ 581
REALIRDI CR+A GLP++EPGRY E +GKD YDPS P+YRYDYWGEPKN+EK+
Sbjct: 659 REALIRDICCRKAFGLPVDEPGRYDVDETEVYGKDYYDPSKPMYRYDYWGEPKNTEKTKL 718
Query: 582 ERMRDAHNKSIVGKGMVWYEMSYDDVIKQKMQ---REARSKCVTPEEVEEEDSTSGHGNG 638
ER + HN+ ++G W EMSYDD ++QK++ EAR + E +EED
Sbjct: 719 EREVELHNQQVIGDAKKWCEMSYDDYVRQKVRMEAAEARERQRKASEPQEEDEKY----- 773
Query: 639 DDDDDGDFDYSILSDSSS 656
+D+ D D + D +
Sbjct: 774 --EDEMDLDLKKMMDPQA 789
>gi|413951633|gb|AFW84282.1| hypothetical protein ZEAMMB73_379007 [Zea mays]
Length = 656
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/617 (57%), Positives = 433/617 (70%), Gaps = 33/617 (5%)
Query: 8 HLFTFP-KPLNPNRPLLHNNNNNRRHVTFPAAATTKSFPPKCFSSDEFPV-DETFLEQFG 65
H FP +P RP LH AA+ S S+DE P D +
Sbjct: 14 HHLPFPSRPKTLLRPRLHRL----------AASINPS------STDETPAADPPVIPSIS 57
Query: 66 PKDKETEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGDEVALQSPEAVEAFKMLKP 125
K+ E E+ ARRR+W+E GWAPWEEI+TPE FAR SLNEG+EV LQSPE++EAF+ML P
Sbjct: 58 IKNTEPEEVARRRSWVEHGWAPWEEIMTPEVAFARHSLNEGEEVPLQSPESLEAFRMLTP 117
Query: 126 SYRMKKIKEMGITEDEWYKKQFEIKGEIPEKLETVWAAPLLVTHVAPRDWPPRGWEVDRK 185
SYR K E G Y ++ + PE LET WA L + V PRDWPP GWEVD
Sbjct: 118 SYRKKVEAEPG------YLERLFATRDTPEPLETTWAGRLPLRLVPPRDWPPPGWEVDPD 171
Query: 186 ELEYIREAHKLQNVRVEI-----GELERKAKFER--EGFNFDMYRVFLKQYNQWVAANKD 238
ELE+IREAH+ + R+++ + K E + + Y++FLKQY +WV AN+D
Sbjct: 172 ELEFIREAHRAASERLDMEAAAAAGVTNVEKLEDAPQDLALERYKMFLKQYKEWVEANRD 231
Query: 239 RLEEESYKYDQDYYPGRRKRGKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGV 298
RLE+ESY++DQDY+PGRRKRGKDY E M ELPFYYPGQIC G+VTTVHLYQGAFV+IG V
Sbjct: 232 RLEQESYQFDQDYFPGRRKRGKDYSEDMRELPFYYPGQICYGQVTTVHLYQGAFVNIGCV 291
Query: 299 YDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPNIDHLIFNRFD 358
++GWVPIKGNDWYWIRHHIK GM V VEILAKRDPYRFRFP+EMRFV PNIDHLIFNRFD
Sbjct: 292 HEGWVPIKGNDWYWIRHHIKPGMKVYVEILAKRDPYRFRFPLEMRFVYPNIDHLIFNRFD 351
Query: 359 FAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNAEQLIL 418
F PIFHR ED N ++L R+ GRPP+PRK P E+E L+S HP+VD LW+ HNAEQ+IL
Sbjct: 352 FPPIFHRKEDTNLEQLWREAGRPPIPRKKPLKDMEKEPLVSDHPFVDTLWEWHNAEQMIL 411
Query: 419 DDMEANPDKYKGKKLSELTDDEEFDDENSVEYTKVNYKKALLAKIILKTSVKELDLEAAL 478
D E NPDK+K D D+E VEYT+ +K+ LL K ++ S+KELDL+AA
Sbjct: 412 DYEEQNPDKFKNTTYESTVDAPSIDEEKRVEYTEGYFKETLLKKKVVNISIKELDLDAAR 471
Query: 479 AEREHHNKLQREAKERGEQYKVYKLRRNFEMDEYNFIHWRRSLEEREALIRDISCRQALG 538
AER+ +L++EA+ERGE+YKV KLRRN EMDEY+ + WRRS EEREALIRDI CR+AL
Sbjct: 472 AERQLIKRLKKEAEERGEEYKVRKLRRNKEMDEYDLMQWRRSFEEREALIRDICCRKALD 531
Query: 539 LPLEEPGRY--KEDSFFGKDEYDPSNPLYRYDYWGEPKNSEKSLQERMRDAHNKSIVGKG 596
LP+EEPGRY E +GKD YDP P+YRYDYWGEPKN+EK+ ER + HN+ +VG
Sbjct: 532 LPIEEPGRYDVDETEVYGKDYYDPEKPMYRYDYWGEPKNTEKTKLERDVERHNQQVVGDA 591
Query: 597 MVWYEMSYDDVIKQKMQ 613
W EMSYDD +++K++
Sbjct: 592 KKWCEMSYDDYVRKKLR 608
>gi|125528743|gb|EAY76857.1| hypothetical protein OsI_04816 [Oryza sativa Indica Group]
Length = 651
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/618 (56%), Positives = 433/618 (70%), Gaps = 26/618 (4%)
Query: 52 DEFPVDET-FLEQFGPKDKETEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGDEVA 110
DE P D+ + K+ E ED ARRR+W+E GWAPWEEI+TPE FAR SLNEG+EV
Sbjct: 38 DETPADDPPVIPSILVKNTEPEDVARRRSWVEHGWAPWEEIMTPEVAFARHSLNEGEEVP 97
Query: 111 LQSPEAVEAFKMLKPSYRMKKIKEMGITEDEWYKKQFEIKGEIPEKLETVWAAPLLVTHV 170
LQ+PE+ EAF+ML P+YR K E G Y+++ + PE LET WA L + V
Sbjct: 98 LQTPESQEAFRMLTPAYREKVESEPG------YEERLFATRDTPEPLETSWAGELPLRLV 151
Query: 171 APRDWPPRGWEVDRKELEYIREAHKLQNVRVEIGELERKAKFEREG-------FNFDMYR 223
PRDWPP GWEVD ELE+IREAH+ R+++ + K + D Y+
Sbjct: 152 PPRDWPPPGWEVDPGELEFIREAHREFTERLDMAAVAAKGVTHVDNVENAPDDLGLDRYK 211
Query: 224 VFLKQYNQWVAANKDRLEEESYKYDQDYYPGRRKRGKDYEEGMYELPFYYPGQICEGKVT 283
+FLKQY +WV AN+DRLEEESYK+DQDYYPGRRKRG+DY+E M ELPF+YPGQIC G+V
Sbjct: 212 MFLKQYKEWVEANRDRLEEESYKFDQDYYPGRRKRGEDYKEDMLELPFFYPGQICRGRVI 271
Query: 284 TVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMR 343
+VHLYQGAFVDIG V+DGWVPIKGNDWYWIRHHI+ GM V VEILAKRDPYRFRFP+EMR
Sbjct: 272 SVHLYQGAFVDIGCVHDGWVPIKGNDWYWIRHHIRPGMEVHVEILAKRDPYRFRFPLEMR 331
Query: 344 FVQPNIDHLIFNRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPY 403
FV PNIDHLIFNRFD+ PIFHR ED NP++L R+ GRPP+PRK P E+E L+S HP+
Sbjct: 332 FVYPNIDHLIFNRFDYPPIFHRKEDTNPEQLWREGGRPPIPRKKPLKDMEKEPLVSDHPF 391
Query: 404 VDKLWQIHNAEQLILDDMEANPDKYKGKKLSELTDDEEFDDENSVEYTKVNYKKALLAKI 463
V+ LW HNAEQ+ILD E NPDK+K D +EN V++T+ +K LL K
Sbjct: 392 VETLWLWHNAEQMILDHEEENPDKFKDTTYESTVDSSIVHEENRVQHTEGYFKDTLLKKE 451
Query: 464 ILKTSVKELDLEAALAEREHHNKLQREAKERGEQYKVYKLRRNFEMDEYNFIHWRRSLEE 523
++ +KELDL+AA AER+ KL++EA+ERGE+YKV KLRRN EMDEY+ + WRRS EE
Sbjct: 452 VVNIDIKELDLDAARAERQLIKKLRKEAEERGEEYKVGKLRRNKEMDEYDLMQWRRSFEE 511
Query: 524 REALIRDISCRQALGLPLEEPGRY--KEDSFFGKDEYDPSNPLYRYDYWGEPKNSEKSLQ 581
REALIRDI CR+A GLP++EPGRY E +GKD YDPS P+YRYDYWGEPKN+EK+
Sbjct: 512 REALIRDICCRKAFGLPVDEPGRYDVDETEVYGKDYYDPSKPMYRYDYWGEPKNTEKTKL 571
Query: 582 ERMRDAHNKSIVGKGMVWYEMSYDDVIKQKMQR---EARSKCVTPEEVEEEDSTSGHGNG 638
ER + HN+ ++G W EMSYDD ++QK++ EAR + E +EED
Sbjct: 572 EREVELHNQQVIGDAKKWCEMSYDDYVQQKVRMEAAEARERQRKASEPQEEDEKY----- 626
Query: 639 DDDDDGDFDYSILSDSSS 656
+D+ D D + D +
Sbjct: 627 --EDEMDLDLKKMMDPQA 642
>gi|326490892|dbj|BAJ90113.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 661
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/570 (58%), Positives = 411/570 (72%), Gaps = 16/570 (2%)
Query: 52 DEFPVDET-FLEQFGPKDKETEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGDEVA 110
DE P D+ L K+ E ED ARRR+W+E GWAPWEE ++PE FAR SLNEG+EV
Sbjct: 49 DEIPADDPPVLPSILVKNNEPEDVARRRSWVEHGWAPWEEAMSPEVAFARHSLNEGEEVP 108
Query: 111 LQSPEAVEAFKMLKPSYRMKKIKEMGITEDEWYKKQFEIKGEIPEKLETVWAAPLLVTHV 170
L SPE+VEAF+ML P+YR K E G E + F ++ E PE LET WA L + V
Sbjct: 109 LTSPESVEAFRMLTPAYREKVESEPGYLE-----RLFSMR-ETPEPLETTWAGQLPLRLV 162
Query: 171 APRDWPPRGWEVDRKELEYIREAHKLQNVRVEIGELERKAKFERE-------GFNFDMYR 223
PRDWPP GWEVD+ EL +IREAH+ + RV++ K E + Y+
Sbjct: 163 PPRDWPPPGWEVDQDELAFIREAHRAASERVDMEAAAAKGVTNVEKVEDAPQDLALERYK 222
Query: 224 VFLKQYNQWVAANKDRLEEESYKYDQDYYPGRRKRGKDYEEGMYELPFYYPGQICEGKVT 283
VFLKQY +WV N+DRLEEESYK+DQDYYPGRRKRGKDY E M ELPF+YPGQIC GKV
Sbjct: 223 VFLKQYKEWVDTNRDRLEEESYKFDQDYYPGRRKRGKDYREDMLELPFFYPGQICYGKVI 282
Query: 284 TVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMR 343
++HL+QGAFVDIGG +DGWVPIKGNDWYWIRHH+K GM+V VEILAKRDPYRFRFP+EMR
Sbjct: 283 SIHLHQGAFVDIGGTHDGWVPIKGNDWYWIRHHVKPGMNVYVEILAKRDPYRFRFPLEMR 342
Query: 344 FVQPNIDHLIFNRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPY 403
V PNIDHLIFNRFDF PIFHR ED N ++L R+ GRPP+PRK P E E L+S HP+
Sbjct: 343 LVYPNIDHLIFNRFDFPPIFHRKEDTNEEQLWREGGRPPIPRKKPLTDMETEPLVSDHPF 402
Query: 404 VDKLWQIHNAEQLILDDMEANPDKYKGKKLSELTDDEEFDDENSVEYTKVNYKKALLAKI 463
V+ LW+ HNAEQ+ILD + NPDK+K D FD+EN ++YT+ K+ +L K
Sbjct: 403 VETLWEWHNAEQMILDHEDENPDKFKDVTYESTVDTSSFDEENRIQYTEGRIKETVLKKK 462
Query: 464 ILKTSVKELDLEAALAEREHHNKLQREAKERGEQYKVYKLRRNFEMDEYNFIHWRRSLEE 523
++ ++KELD++AA ERE +L+ EA+ERGE+YK+ K+RRN EMDEY+ + WRRS EE
Sbjct: 463 VVNVNIKELDMKAARIEREEIKRLKAEAQERGEEYKIEKMRRNIEMDEYDLLQWRRSYEE 522
Query: 524 REALIRDISCRQALGLPLEEPGRYKEDS--FFGKDEYDPSNPLYRYDYWGEPKNSEKSLQ 581
REAL+RDI CR+ALGLP+EEPGRY D +GKD YDPS P+YRYDYWGEP+N+EK
Sbjct: 523 REALLRDICCRKALGLPIEEPGRYDVDETVVYGKDYYDPSKPMYRYDYWGEPRNTEKVKL 582
Query: 582 ERMRDAHNKSIVGKGMVWYEMSYDDVIKQK 611
ER + HN+ I+G W E SY+D +++K
Sbjct: 583 ERDVERHNQQIIGDAKKWCETSYEDYVRKK 612
>gi|7630037|emb|CAB88331.1| putative protein [Arabidopsis thaliana]
Length = 496
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/504 (67%), Positives = 388/504 (76%), Gaps = 31/504 (6%)
Query: 1 MQILQSSHLFTFPKPLNPN--RPLLHNNNNNRRHVTFPAAATTKSFPPKCFSSDEFPVDE 58
MQI Q+ FTFP P NPN +P + RR P + FSSDEFPVDE
Sbjct: 1 MQICQTKLNFTFPNPTNPNFCKPKALQWSPPRRISLLPC---------RGFSSDEFPVDE 51
Query: 59 TFLEQFGPKDKETEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGDEVALQSPEAVE 118
TFLE+FGPKDK+TEDEARRRNWIERGWAPWEEILTPEADFARKSLNEG+EV LQSPEA+E
Sbjct: 52 TFLEKFGPKDKDTEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGEEVPLQSPEAIE 111
Query: 119 AFKMLKPSYRMKKIKEMGITEDEWYKKQFEIKGEIPEKLETVWAAPLLVTHVAPRDWPPR 178
AFKML+PSYR KKIKEMGITEDEWY KQFEI+G+ P LET WA P+++ + PRDWPPR
Sbjct: 112 AFKMLRPSYRKKKIKEMGITEDEWYAKQFEIRGDKPPPLETSWAGPMVLRQIPPRDWPPR 171
Query: 179 GWEVDRKELEYIREAHKLQNVRVEIGELERKAKFEREG----FNFDMYRVFLKQYNQWVA 234
GWEVDRKELE+IREAHKL RV + +L++ + + + ++VFLKQY +WV
Sbjct: 172 GWEVDRKELEFIREAHKLMAERVWLEDLDKDLRVGEDATVDKMCLERFKVFLKQYKEWVE 231
Query: 235 ANKDRLEEESYKYDQDYYPGRRKRGKDYEEGMYELPFYYPGQ------IC--EGKVTTVH 286
NKDRLEEESYK DQD+YPGRRKRGKDYE+GMYELPFYYPG IC E +T
Sbjct: 232 DNKDRLEEESYKLDQDFYPGRRKRGKDYEDGMYELPFYYPGMAQLPLYICIRERLLTLEV 291
Query: 287 LYQGAFVDIGGV--------YDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRF 338
+G F+ + V Y GWVPIKGNDW+WIRH IKVGMHVIVEI AKRDPYRFRF
Sbjct: 292 FMKGMFMSLYFVKIDLPWFLYLGWVPIKGNDWFWIRHFIKVGMHVIVEITAKRDPYRFRF 351
Query: 339 PIEMRFVQPNIDHLIFNRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLL 398
P+E+RFV PNIDH+IFN+FDF PIFHRD D NPDE+RRDCGRPP PRK PG KPEEEGLL
Sbjct: 352 PLELRFVHPNIDHMIFNKFDFPPIFHRDGDTNPDEIRRDCGRPPEPRKDPGSKPEEEGLL 411
Query: 399 STHPYVDKLWQIHNAEQLILDDMEANPDKYKGKKLSELTDDEEFDDENSVEYTKVNYKKA 458
S HPYVDKLWQIH AEQ+IL D EANP KY+GKKLSEL+DDE+FD++ +EY + YKK
Sbjct: 412 SDHPYVDKLWQIHVAEQMILGDYEANPAKYEGKKLSELSDDEDFDEQKDIEYGEAYYKKT 471
Query: 459 LLAKIILKTSVKELDLEAALAERE 482
L K+ILKTSVKELDLEAAL ER+
Sbjct: 472 KLPKVILKTSVKELDLEAALTERQ 495
>gi|125573003|gb|EAZ14518.1| hypothetical protein OsJ_04441 [Oryza sativa Japonica Group]
Length = 629
Score = 630 bits (1624), Expect = e-177, Method: Compositional matrix adjust.
Identities = 323/569 (56%), Positives = 401/569 (70%), Gaps = 25/569 (4%)
Query: 100 RKSLNEGDEVALQSPEAVEAFKMLKPSYRMKKIKEMGITEDEWYKKQFEIKGEIPEKLET 159
R LNEG+EV LQ+PE+ EAF+ML P+YR K E G Y+++ + PE LET
Sbjct: 65 RSCLNEGEEVPLQTPESQEAFRMLTPAYREKVESEPG------YEERLFATRDTPEPLET 118
Query: 160 VWAAPLLVTHVAPRDWPPRGWEVDRKELEYIREAHKLQNVRVEIGELERKA-----KFER 214
WA L + V PRDWPP GWEVD ELE+IREAH+ R+++ + K K E
Sbjct: 119 SWAGELPLRLVPPRDWPPPGWEVDPGELEFIREAHREFTERLDMAAVAAKGVTHVDKVEN 178
Query: 215 --EGFNFDMYRVFLKQYNQWVAANKDRLEEESYKYDQDYYPGRRKRGKDYEEGMYELPFY 272
+ D Y++FLKQY +WV AN+DRLEEESYK+DQDYYPGRRKRG+DY+E M ELPF+
Sbjct: 179 APDDLGLDRYKMFLKQYKEWVEANRDRLEEESYKFDQDYYPGRRKRGEDYKEDMLELPFF 238
Query: 273 YPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRD 332
YPGQIC G+V +VHLYQGAFVDIG V+DGWVPIKGNDWYWIRHHI+ GM V VEILAKRD
Sbjct: 239 YPGQICRGRVISVHLYQGAFVDIGCVHDGWVPIKGNDWYWIRHHIRPGMEVHVEILAKRD 298
Query: 333 PYRFRFPIEMRFVQPNIDHLIFNRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKP 392
PYRFRFP+EMRFV PNIDHLIFNRFD+ PIFHR ED NP++L R+ GRPP+PRK P
Sbjct: 299 PYRFRFPLEMRFVYPNIDHLIFNRFDYPPIFHRKEDTNPEQLWREGGRPPIPRKKPLKDM 358
Query: 393 EEEGLLSTHPYVDKLWQIHNAEQLILDDMEANPDKYKGKKLSELTDDEEFDDENSVEYTK 452
E+E L+S HP+V+ LW HNAEQ+ILD E NPDK+K D +EN V++T+
Sbjct: 359 EKEPLVSDHPFVETLWLWHNAEQMILDHEEENPDKFKDTTYESTVDSSIVHEENRVQHTE 418
Query: 453 VNYKKALLAKIILKTSVKELDLEAALAEREHHNKLQREAKERGEQYKVYKLRRNFEMDEY 512
+K LL K ++ +KELDL+AA AER+ KL++EA+ERGE+YKV KLRRN EMDEY
Sbjct: 419 GYFKDTLLKKEVVNIDIKELDLDAARAERQLIKKLRKEAEERGEEYKVGKLRRNKEMDEY 478
Query: 513 NFIHWRRSLEEREALIRDISCRQALGLPLEEPGRY--KEDSFFGKDEYDPSNPLYRYDYW 570
+ + WRRS EEREALIRDI CR+A GLP++EPGRY E +GKD YDPS P+YRYDYW
Sbjct: 479 DLMQWRRSFEEREALIRDICCRKAFGLPVDEPGRYDVDETEVYGKDYYDPSKPMYRYDYW 538
Query: 571 GEPKNSEKSLQERMRDAHNKSIVGKGMVWYEMSYDDVIKQKMQ---REARSKCVTPEEVE 627
GEPKN+EK+ ER + HN+ ++G W EMSYDD ++QK++ EAR + E +
Sbjct: 539 GEPKNTEKTKLEREVELHNQQVIGDAKKWCEMSYDDYVRQKVRMEAAEARERQRKASEPQ 598
Query: 628 EEDSTSGHGNGDDDDDGDFDYSILSDSSS 656
EED +D+ D D + D +
Sbjct: 599 EEDEKY-------EDEMDLDLKKMMDPQA 620
>gi|242059577|ref|XP_002458934.1| hypothetical protein SORBIDRAFT_03g042950 [Sorghum bicolor]
gi|241930909|gb|EES04054.1| hypothetical protein SORBIDRAFT_03g042950 [Sorghum bicolor]
Length = 641
Score = 604 bits (1558), Expect = e-170, Method: Compositional matrix adjust.
Identities = 321/607 (52%), Positives = 393/607 (64%), Gaps = 75/607 (12%)
Query: 38 AATTKSFPPKCFSSDEFPV-DETFLEQFGPKDKETEDEARRRNWIERGWAPWEEILTPEA 96
AA+ PP DE P D + K+ E E+ ARRR+W+E GWAPWEEI+TPE
Sbjct: 68 AASINPSPP-----DETPAADPPVIPSISIKNTEPEEVARRRSWVEHGWAPWEEIMTPEV 122
Query: 97 DFARKSLNEGDEVALQSPEAVEAFKMLKPSYRMKKIKEMGITEDEWYKKQFEIKGEIPEK 156
FAR SLNEG+EV LQSPE++EAF+ML PSYR K E G Y ++ + PE
Sbjct: 123 AFARHSLNEGEEVPLQSPESLEAFRMLTPSYRKKVEAEPG------YLERLFATRDTPEP 176
Query: 157 LETVWAAPLLVTHVAPRDWPPRGWEVDRKELEYIREAHKLQNVRVEI-----GELERKAK 211
LET WA L + V PRDWPP GWEVD ELE+IREAH+ + R+++ + K
Sbjct: 177 LETTWAGRLPLRLVPPRDWPPPGWEVDPDELEFIREAHREASERLDMEAAAAAGVTNVEK 236
Query: 212 FE--REGFNFDMYRVFLKQYNQWVAANKDRLEEESYKYDQDYYPGRRKRGKDYEEGMYEL 269
E + D Y++FLKQY +WV AN+DRLE+ESY++DQDY+PGRRKRGKDY E M+EL
Sbjct: 237 LEDAPQDLALDRYKMFLKQYKEWVEANRDRLEQESYQFDQDYFPGRRKRGKDYSEDMHEL 296
Query: 270 PFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILA 329
PFYYPGQIC G+VTTVHLYQGAFV+IG V++GWVPIKGNDWYWIRHHI+ GM V VEILA
Sbjct: 297 PFYYPGQICYGQVTTVHLYQGAFVNIGCVHEGWVPIKGNDWYWIRHHIRPGMKVYVEILA 356
Query: 330 KRDPYRFRFPIEMRFVQPNIDHLIFNRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPG 389
KRDPYRFRFP+EMRFV PNIDHLIFNRFDF PIFHR ED N ++L R+ GRPP+PRK P
Sbjct: 357 KRDPYRFRFPLEMRFVYPNIDHLIFNRFDFPPIFHRKEDTNLEQLWREAGRPPIPRKKPL 416
Query: 390 VKPEEEGLLSTHPYVDKLWQIHNAEQLILDDMEANPDKYKGKKLSELTDDEEFDDENSVE 449
E+E L+S HP+VD LW+ HNAEQ+ILD E NPDK+K D D+E VE
Sbjct: 417 KDMEKEPLVSDHPFVDTLWEWHNAEQMILDYEEQNPDKFKDTTYESTVDASSIDEEKRVE 476
Query: 450 YTKVNYKKALLAKIILKTSVKELDLEAALAEREHHNKLQREAKERGEQYKVYKLRRNFEM 509
YT+ +K+ LL K ++ SVKELDL+AA AER+
Sbjct: 477 YTEGYFKETLLKKTVVNISVKELDLDAARAERQ--------------------------- 509
Query: 510 DEYNFIHWRRSLEEREALIRDISCRQALGLPLEEPGRY--KEDSFFGKDEYDPSNPLYRY 567
I R+ALGLP+EEPGRY E +GKD YDP P+YRY
Sbjct: 510 ---------------------ICSRKALGLPIEEPGRYDVDETEVYGKDYYDPEKPMYRY 548
Query: 568 DYWGEPKNSEKSLQERMRDAHNKSIVGKGMVWYEMSYDDVIKQKMQ------REARSKCV 621
DYWGEPKN+EK+ ER + HN+ +VG W EMSYDD +++K++ RE + K
Sbjct: 549 DYWGEPKNTEKTKVERDVERHNQQVVGDAKKWCEMSYDDYVRKKLRLEAAEARERQRKAS 608
Query: 622 TPEEVEE 628
P+E EE
Sbjct: 609 EPQEDEE 615
>gi|217074724|gb|ACJ85722.1| unknown [Medicago truncatula]
Length = 407
Score = 597 bits (1538), Expect = e-167, Method: Compositional matrix adjust.
Identities = 304/419 (72%), Positives = 345/419 (82%), Gaps = 15/419 (3%)
Query: 266 MYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIV 325
MYELPFYYPGQIC GKVTT+HLYQGAFVDIGGVYDGWVPIK NDW+WIRHHIKVGM VIV
Sbjct: 1 MYELPFYYPGQICVGKVTTLHLYQGAFVDIGGVYDGWVPIKNNDWFWIRHHIKVGMTVIV 60
Query: 326 EILAKRDPYRFRFPIEMRFVQPNIDHLIFNRFDFAPIFHRDEDKNPDELRRDCGRPPVPR 385
I AKRDPYRFRFPIE+RFV PNIDHLIFNRFDF PIFHRDED NPDELRRDCGRPP+PR
Sbjct: 61 GITAKRDPYRFRFPIELRFVDPNIDHLIFNRFDFPPIFHRDEDTNPDELRRDCGRPPIPR 120
Query: 386 KYPGVKPEEEGLLSTHPYVDKLWQIHNAEQLILDDMEANPDKYKGKKLSELTDDEEFDDE 445
K PG +PEEE L S HPYV+KLWQI+ AEQ+IL+DM+ NPDKYKGKKLS+L D+++FD+E
Sbjct: 121 KDPGDEPEEEPLFSNHPYVEKLWQINVAEQMILNDMDINPDKYKGKKLSDLVDEDDFDEE 180
Query: 446 NSVEYTKVNYKKALLAKIILKTSVKELDLEAALAEREHHNKLQREAKERGEQYKVYKLRR 505
SV+ TKV YK AL+ KI +KTSVKELDLEAALAERE H KL +EAK+RGE YK+ L+R
Sbjct: 181 KSVQQTKVPYKNALVPKITMKTSVKELDLEAALAERELHKKLWKEAKDRGEDYKIATLKR 240
Query: 506 NFEMDEYNFIHWRRSLEEREALIRDISCRQALGLPLEEPGRYKEDSFFGKDEYDPSNPLY 565
N EMDEY+F+HWRRS EEREALIRDISCR+ LGLPLEEPGRY + SFFGKD+YDP +PLY
Sbjct: 241 NIEMDEYDFMHWRRSFEEREALIRDISCRKTLGLPLEEPGRYVDASFFGKDQYDPESPLY 300
Query: 566 RYDYWGEPKNSEKSLQERMRDAHNKSIVGKGMVWYEMSYDDVIKQKMQREARSKCVTPEE 625
RYDYWGEPKNSEKS +ERM D HNKSIVGKG VW EM Y+D +K + P+E
Sbjct: 301 RYDYWGEPKNSEKSRKERMTDTHNKSIVGKGTVWCEMPYEDSVKHQ-----------PKE 349
Query: 626 VEE---EDSTSGHGNGDDDDDGDFDYSILSDSSSLSFSNQPVVNGTESSSISDEGMFED 681
V+E + DDDDD DFD+SILS S + S+Q VNGTE+S +SDEG+FED
Sbjct: 350 VDEYSKQGEAVEEEEEDDDDDDDFDFSILS-SLGTNASDQIHVNGTETSRLSDEGVFED 407
>gi|293333293|ref|NP_001168532.1| uncharacterized protein LOC100382312 [Zea mays]
gi|223948959|gb|ACN28563.1| unknown [Zea mays]
Length = 496
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 276/446 (61%), Positives = 338/446 (75%), Gaps = 9/446 (2%)
Query: 177 PRGWEVDRKELEYIREAHKLQNVRVEI-----GELERKAKFER--EGFNFDMYRVFLKQY 229
P GWEVD ELE+IREAH+ + R+++ + K E + + Y++FLKQY
Sbjct: 3 PPGWEVDPDELEFIREAHRAASERLDMEAAAAAGVTNVEKLEDAPQDLALERYKMFLKQY 62
Query: 230 NQWVAANKDRLEEESYKYDQDYYPGRRKRGKDYEEGMYELPFYYPGQICEGKVTTVHLYQ 289
+WV AN+DRLE+ESY++DQDY+PGRRKRGKDY E M ELPFYYPGQIC G+VTTVHLYQ
Sbjct: 63 KEWVEANRDRLEQESYQFDQDYFPGRRKRGKDYSEDMRELPFYYPGQICYGQVTTVHLYQ 122
Query: 290 GAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPNI 349
GAFV+IG V++GWVPIKGNDWYWIRHHIK GM V VEILAKRDPYRFRFP+EMRFV PNI
Sbjct: 123 GAFVNIGCVHEGWVPIKGNDWYWIRHHIKPGMKVYVEILAKRDPYRFRFPLEMRFVYPNI 182
Query: 350 DHLIFNRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQ 409
DHLIFNRFDF PIFHR ED N ++L R+ GRPP+PRK P E+E L+S HP+VD LW+
Sbjct: 183 DHLIFNRFDFPPIFHRKEDTNLEQLWREAGRPPIPRKKPLKDMEKEPLVSDHPFVDTLWE 242
Query: 410 IHNAEQLILDDMEANPDKYKGKKLSELTDDEEFDDENSVEYTKVNYKKALLAKIILKTSV 469
HNAEQ+ILD E NPDK+K D D+E VEYT+ +K+ LL K ++ S+
Sbjct: 243 WHNAEQMILDYEEQNPDKFKNTTYESTVDAPSIDEEKRVEYTEGYFKETLLKKKVVNISI 302
Query: 470 KELDLEAALAEREHHNKLQREAKERGEQYKVYKLRRNFEMDEYNFIHWRRSLEEREALIR 529
KELDL+AA AER+ +L++EA+ERGE+YKV KLRRN EMDEY+ + WRRS EEREALIR
Sbjct: 303 KELDLDAARAERQLIKRLKKEAEERGEEYKVRKLRRNKEMDEYDLMQWRRSFEEREALIR 362
Query: 530 DISCRQALGLPLEEPGRY--KEDSFFGKDEYDPSNPLYRYDYWGEPKNSEKSLQERMRDA 587
DI CR+AL LP+EEPGRY E +GKD YDP P+YRYDYWGEPKN+EK+ ER +
Sbjct: 363 DICCRKALDLPIEEPGRYDVDETEVYGKDYYDPEKPMYRYDYWGEPKNTEKTKLERDVER 422
Query: 588 HNKSIVGKGMVWYEMSYDDVIKQKMQ 613
HN+ +VG W EMSYDD +++K++
Sbjct: 423 HNQQVVGDAKKWCEMSYDDYVRKKLR 448
>gi|297598134|ref|NP_001045114.2| Os01g0901900 [Oryza sativa Japonica Group]
gi|56784516|dbj|BAD82773.1| unknown protein [Oryza sativa Japonica Group]
gi|56784874|dbj|BAD82114.1| unknown protein [Oryza sativa Japonica Group]
gi|215695333|dbj|BAG90524.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255673970|dbj|BAF07028.2| Os01g0901900 [Oryza sativa Japonica Group]
Length = 468
Score = 493 bits (1269), Expect = e-136, Method: Compositional matrix adjust.
Identities = 250/437 (57%), Positives = 310/437 (70%), Gaps = 15/437 (3%)
Query: 52 DEFPVDET-FLEQFGPKDKETEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGDEVA 110
DE P D+ + K+ E ED ARRR+W+E GWAPWEEI+TPE FAR SLNEG+EV
Sbjct: 38 DETPADDPPVIPSILVKNTEPEDVARRRSWVEHGWAPWEEIMTPEVAFARHSLNEGEEVP 97
Query: 111 LQSPEAVEAFKMLKPSYRMKKIKEMGITEDEWYKKQFEIKGEIPEKLETVWAAPLLVTHV 170
LQ+PE+ EAF+ML P+YR K E G Y+++ + PE LET WA L + V
Sbjct: 98 LQTPESQEAFRMLTPAYREKVESEPG------YEERLFATRDTPEPLETSWAGELPLRLV 151
Query: 171 APRDWPPRGWEVDRKELEYIREAHKLQNVRVEIGELERKA-----KFER--EGFNFDMYR 223
PRDWPP GWEVD ELE+IREAH+ R+++ + K K E + D Y+
Sbjct: 152 PPRDWPPPGWEVDPGELEFIREAHREFTERLDMAAVAAKGVTHVDKVENAPDDLGLDRYK 211
Query: 224 VFLKQYNQWVAANKDRLEEESYKYDQDYYPGRRKRGKDYEEGMYELPFYYPGQICEGKVT 283
+FLKQY +WV AN+DRLEEESYK+DQDYYPGRRKRG+DY+E M ELPF+YPGQIC G+V
Sbjct: 212 MFLKQYKEWVEANRDRLEEESYKFDQDYYPGRRKRGEDYKEDMLELPFFYPGQICRGRVI 271
Query: 284 TVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMR 343
+VHLYQGAFVDIG V+DGWVPIKGNDWYWIRHHI+ GM V VEILAKRDPYRFRFP+EMR
Sbjct: 272 SVHLYQGAFVDIGCVHDGWVPIKGNDWYWIRHHIRPGMEVHVEILAKRDPYRFRFPLEMR 331
Query: 344 FVQPNIDHLIFNRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPY 403
FV PNIDHLIFNRFD+ PIFHR ED NP++L R+ GRPP+PRK P E+E L+S HP+
Sbjct: 332 FVYPNIDHLIFNRFDYPPIFHRKEDTNPEQLWREGGRPPIPRKKPLKDMEKEPLVSDHPF 391
Query: 404 VDKLWQIHNAEQLILDDMEANPDKYKGKKLSELTDDEEFDDENSVEYTKVNYKKALLAK- 462
V+ LW HNAEQ+ILD E NPDK+K D +EN V++T+ +K LL K
Sbjct: 392 VETLWLWHNAEQMILDHEEENPDKFKDTTYESTVDSSIVHEENRVQHTEGYFKDTLLKKE 451
Query: 463 IILKTSVKELDLEAALA 479
+++ S+ + L +++
Sbjct: 452 VVISRSLIWMPLVLSVS 468
>gi|167998991|ref|XP_001752201.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696596|gb|EDQ82934.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 795
Score = 366 bits (940), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 243/557 (43%), Positives = 332/557 (59%), Gaps = 65/557 (11%)
Query: 79 NWIERGWAPWEEILTPEADFARKSLNEGDEVALQSPEAVEAFKMLKPSYRMKKIKEMGIT 138
NW+ERGWAPWEE L+PE FA SL G+E + + E F+ L P ++ + K + I
Sbjct: 128 NWVERGWAPWEEWLSPEGQFAIDSLVAGEE---EPAVSWENFQKLNPKWQEEHRKRL-IA 183
Query: 139 EDEWYKKQFEIKGEIPEKLE-TVWAAPLLVTHVAPRDWPPRGWEVDRKELEYIREAHKLQ 197
E E +++ E+ P+ +E T++ PL T + PRDWPP W+VD KEL +IREA L+
Sbjct: 184 EAE--RREKELDKRKPKSIEGTMYDQPLTFTLIPPRDWPPPDWKVDSKELAFIREAFALE 241
Query: 198 NVRVEIGELER--KAKFEREGFNFDM--YRVFLKQYNQWVAANKDRLEEESYKYDQDYYP 253
NV EL K + + E ++M ++ FL QYN+WVAANKDRL+ E+ + D +YYP
Sbjct: 242 NVVPTEEELAEADKEELDEENHEYEMPRWKTFLNQYNEWVAANKDRLDREAEEVDPEYYP 301
Query: 254 GRRKRGK--DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWY 311
GRR+ G+ + E+G Y L ++ G VT V LY+GAFV GGV+DGWVPI NDWY
Sbjct: 302 GRRRLGEKAETEDGSY-LHYW-------GVVTCVSLYEGAFVFFGGVHDGWVPIMDNDWY 353
Query: 312 WIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPNIDHLIFNRFDFAPIFHRDEDKNP 371
+IR IK GM V+VE++AKRDPYRFRFPIEMRFV PNIDHLIF RF PIF R+ D N
Sbjct: 354 YIRDVIKPGMRVLVEVIAKRDPYRFRFPIEMRFVDPNIDHLIFRRFKHPPIFGREGDLNL 413
Query: 372 DELRRDCGRPPVPRKYPGVKPEEEGLLS-THPYVDKLWQIHNAEQLILDDMEANPDKYKG 430
DE+ RD RP P K KP E+G HP + KLWQ+H AEQ++LD E
Sbjct: 414 DEVARDSNRPYYP-KVRQEKPAEDGQTKPVHPAISKLWQLHQAEQMVLDHEEMG------ 466
Query: 431 KKLSELTDDEEFD-------------------DENSVEYTKVN---------YKKAL--- 459
L D+EEFD D N V T ++ L
Sbjct: 467 ---GNLDDEEEFDVSGFDILPYDEDEDEDEDEDANDVVVTAEEDLETFEPQWFQNGLDER 523
Query: 460 -LAKIILKTSVKELDLEAALAEREHHNKLQREAKERGEQYKVYKLRRNFEMDEYNFIHWR 518
+ ++L T+ ++L+LE A AERE +L A+E+GE++ LR ++E N +H +
Sbjct: 524 RVPTLVLNTNPEDLNLERARAEREEIKRLMLIAEEKGEEFICPPLRFEKRVEELNNMHNQ 583
Query: 519 RSLEEREALIRDISCRQALGLPLEEPGRYKEDSFFGKDEYDPSNPLYRYDYWGEPKNSEK 578
R+ EE EAL RDI+ R+ LGLPLEEPGRY + + +GK+ YDP++P +R DYWG+P +
Sbjct: 584 RTKEEFEALRRDIAARKELGLPLEEPGRYADKTKWGKNPYDPNDPRFRNDYWGDPSTLKD 643
Query: 579 SLQERMRDAHNKSIVGK 595
++ R R+ ++V +
Sbjct: 644 EIR-RDREPRVATVVSE 659
>gi|302762120|ref|XP_002964482.1| hypothetical protein SELMODRAFT_438805 [Selaginella moellendorffii]
gi|300168211|gb|EFJ34815.1| hypothetical protein SELMODRAFT_438805 [Selaginella moellendorffii]
Length = 838
Score = 315 bits (808), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 208/547 (38%), Positives = 290/547 (53%), Gaps = 78/547 (14%)
Query: 83 RGWAPWEEILTPEADFARKSLNEGDEVALQSPEAVEAFKMLKPSYRMKKIKEMGITEDE- 141
RGWAPWEE+ PE FA KSL + + PE V KP R KK E+ E+E
Sbjct: 284 RGWAPWEEVHPPENHFALKSLGDASVENPRLPEGVIELLDKKPK-REKKAPEVREVEEEL 342
Query: 142 -WYKKQFEIKGEIPEKLETVWAAPLLVTHVAPRDWPPRGWEVDRKELEYIREAHKL-QNV 199
++ F + + PRDWPP GWEVD+KELE+IRE H + +NV
Sbjct: 343 DFHSVAFAL--------------------IPPRDWPPPGWEVDQKELEFIRETHTMYENV 382
Query: 200 RVEIGELERKAKFEREGFNFDMYRVFLKQYNQWVAANKDRLEEE----------SYKYDQ 249
VE +LE + G + + F+KQY++WVAANK+RL++E S+ D
Sbjct: 383 VVEKKDLEGARAHDDPGISLARWETFVKQYDEWVAANKERLDKEALEASIYLELSFGVDP 442
Query: 250 DYYPGRRKRGKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGND 309
+Y PGRR+ G Y +GMYELPF YPGQ G + + + GAF+ G V+DGWV I+ ND
Sbjct: 443 EYSPGRRRTGARYTDGMYELPFIYPGQHHVGMIVHIDKHDGAFIYFGCVHDGWVGIQDND 502
Query: 310 WYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPNIDHLIFNRFDFAPIFHRDEDK 369
W+ +RH ++VG V VE+LAKRDPYR+RFPIEMRFV PNID IF RF + PI R D
Sbjct: 503 WFKLRHILEVGSIVEVEVLAKRDPYRYRFPIEMRFVNPNIDKDIFRRFKYPPIIQRPGDG 562
Query: 370 NPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNAEQLILDDMEANPDKY- 428
+ +E+ R+ GRP P E + +HPY+ KL ++ EQ ILDD E D+
Sbjct: 563 HDEEVARETGRPFTLELEPTFADEPDPRECSHPYIPKLRHLYICEQSILDDEEGTGDEVE 622
Query: 429 ----KG-------KKLSELTDDEEFDDENSVEYT-----------------KVNYKKALL 460
KG +K+ E T +E ++ N VE K K +
Sbjct: 623 VEDEKGEETNGEEEKVPEPTKEEWYEYVNQVEKELTDEEDLDDDDEQLIKRKAARKNPGV 682
Query: 461 AKIILKTSV------------KELDLEAALAEREHHNKLQREAKERGEQYKVYKL-RRNF 507
I+ T EL+L+ A ER+ N+L EA RG+++ L +R
Sbjct: 683 VGILAPTPAVPYRSFLVNIDKAELELDVAREERQTRNRLYNEAAARGDKHVDIPLPKRQV 742
Query: 508 EMDEYNFIHWRRSLEEREALIRDISCRQALGLPLEEPGRYKEDSFFGKDEYDPSNPLYRY 567
M E +H +R EE EAL+RD +CR GLP +P R+ +D + +++++P +++
Sbjct: 743 MMLELERMHRQRCREEEEALMRDATCRLEAGLPACDP-RFSDDP-WPENKFNPLKKIWQA 800
Query: 568 DYWGEPK 574
DY G+PK
Sbjct: 801 DYIGDPK 807
>gi|302787086|ref|XP_002975313.1| hypothetical protein SELMODRAFT_415496 [Selaginella moellendorffii]
gi|300156887|gb|EFJ23514.1| hypothetical protein SELMODRAFT_415496 [Selaginella moellendorffii]
Length = 693
Score = 313 bits (803), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 209/545 (38%), Positives = 292/545 (53%), Gaps = 74/545 (13%)
Query: 83 RGWAPWEEILTPEADFARKSLNEGDEVALQSPEAVEAFKMLKPSYRMKKIKEMGITEDEW 142
RGWAPWEE+ PE FA KSL + + PE V KP R KK E+
Sbjct: 139 RGWAPWEEVHPPENHFALKSLGDASVENPRLPEGVIELLDKKPK-REKKAPEVR------ 191
Query: 143 YKKQFEIKGEIPEKLETVWAAPLLVTHVAPRDWPPRGWEVDRKELEYIREAHKL-QNVRV 201
E+ E+L+ A L+ PRDWPP GWEVD+KELE+IRE H + +NV V
Sbjct: 192 ---------EVEEELDFHSVAFALI---PPRDWPPPGWEVDQKELEFIRETHTMYENVVV 239
Query: 202 EIGELERKAKFEREGFNFDMYRVFLKQYNQWVAANKDRLEEE----------SYKYDQDY 251
E +LE + G + + F+KQY++WVAANK+RL++E S+ D +Y
Sbjct: 240 EKKDLEGARAHDDPGISLSRWETFVKQYDEWVAANKERLDKEALEASISLELSFVVDPEY 299
Query: 252 YPGRRKRGKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWY 311
PGRR+ G Y +GMYELPF YPGQ G + + + GAF+ G V+DGWV I+ NDW+
Sbjct: 300 SPGRRRTGARYTDGMYELPFIYPGQHHVGMIVHIDKHDGAFIYFGCVHDGWVGIQDNDWF 359
Query: 312 WIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPNIDHLIFNRFDFAPIFHRDEDKNP 371
+RH ++VG V VE+LAKRDPYR+RFPIEMRFV PNID IF RF + PI R D +
Sbjct: 360 KLRHILEVGSIVEVEVLAKRDPYRYRFPIEMRFVNPNIDKDIFRRFKYPPIIQRPGDGHD 419
Query: 372 DELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNAEQLILDDMEANPDKY--- 428
+E+ R+ GRP P E + +HPY+ KL ++ EQ ILDD E D+
Sbjct: 420 EEVARETGRPFTLELEPTFADEPDPRECSHPYIPKLRHLYICEQSILDDEEGTGDEVEVE 479
Query: 429 --KG-------KKLSELTDDEEFDDENSVEYT-----------------KVNYKKALLAK 462
KG +K+ E T +E ++ N VE K K +
Sbjct: 480 DEKGDETNGEEEKVPEPTKEEWYEYVNQVEKELTDEEDLDDDDEQLIKRKAARKNPGVVG 539
Query: 463 IILKTSV------------KELDLEAALAEREHHNKLQREAKERGEQYKVYKL-RRNFEM 509
I+ T+ EL+L+ A ER+ N+L EA +G+++ L +R M
Sbjct: 540 ILAPTAAVPYRSFLVNIDKAELELDVAREERQTRNRLYNEAAAQGDKHVDIPLPKRQVMM 599
Query: 510 DEYNFIHWRRSLEEREALIRDISCRQALGLPLEEPGRYKEDSFFGKDEYDPSNPLYRYDY 569
E +H +R EE EAL+RD +CR GLP +P R+ +D + +++++P +++ DY
Sbjct: 600 LELERMHRQRCREEEEALMRDATCRLEAGLPACDP-RFSDDP-WPENKFNPLKKIWQADY 657
Query: 570 WGEPK 574
G+PK
Sbjct: 658 IGDPK 662
>gi|6523081|emb|CAB62339.1| hypothetical protein (fragment) [Arabidopsis thaliana]
Length = 206
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 144/205 (70%), Positives = 164/205 (80%), Gaps = 4/205 (1%)
Query: 466 KTSVKELDLEAALAEREHHNKLQREAKERGEQYKVYKLRRNFEMDEYNFIHWRRSLEERE 525
KTSVKELDLEAAL ER+HHNKL EAK RGE YK+ KLRRN EMDEY+F+HWRRSLEERE
Sbjct: 1 KTSVKELDLEAALTERQHHNKLMMEAKARGEGYKIDKLRRNIEMDEYDFLHWRRSLEERE 60
Query: 526 ALIRDISCRQALGLPLEEPGRYKEDSFFGKDEYDPSNPLYRYDYWGEPKNSEKSLQERMR 585
AL+RDIS RQALGLPLEEPGRYK SFFGKD+YDP++ LY+YDYWGEPKNSE S QERM+
Sbjct: 61 ALLRDISSRQALGLPLEEPGRYKPGSFFGKDQYDPTSALYQYDYWGEPKNSEISKQERMK 120
Query: 586 DAHNKSIVGKGMVWYEMSYDDVIKQKMQREARSKCVTPEEVEEEDSTSGHGNGDDDDDGD 645
DAHNKSIVGKG VWY+MSYDD IKQ +++ + +E E E DDDD D
Sbjct: 121 DAHNKSIVGKGNVWYDMSYDDAIKQTIEKRKEGSTLASQEEETESEEE---EEDDDDFDD 177
Query: 646 FDYSILSDSSSLSFS-NQPVVNGTE 669
FDYSILSD SS+ +S QP+VNGT+
Sbjct: 178 FDYSILSDESSIGYSEQQPLVNGTQ 202
>gi|388497540|gb|AFK36836.1| unknown [Medicago truncatula]
Length = 180
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 118/180 (65%), Positives = 137/180 (76%), Gaps = 6/180 (3%)
Query: 1 MQILQSSHLFTFPKPLNPN-RPLLHNNNNNRRHVTFPAAATTKSFPPKCFSSDEFPVDET 59
MQ+ +S+LFTFPKPLN PL H + H P KSF +SDEFPVDET
Sbjct: 1 MQVFPNSYLFTFPKPLNLKPSPLFHGHPPPLLHRKPPLTTVAKSF-----TSDEFPVDET 55
Query: 60 FLEQFGPKDKETEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGDEVALQSPEAVEA 119
FL+ FGPK KE+EDEARRRNWIERGWAPWEEILTPEA FAR SLNEG+EV L SPE++EA
Sbjct: 56 FLQTFGPKTKESEDEARRRNWIERGWAPWEEILTPEAKFARTSLNEGEEVPLSSPESIEA 115
Query: 120 FKMLKPSYRMKKIKEMGITEDEWYKKQFEIKGEIPEKLETVWAAPLLVTHVAPRDWPPRG 179
F+ML P YR KKI+EMG+TE+E+ KQFEIK ++PE+LET WA PL+V V PRDWPPRG
Sbjct: 116 FRMLNPRYRKKKIEEMGVTEEEYLAKQFEIKEDVPEELETKWAGPLVVKLVPPRDWPPRG 175
>gi|255540333|ref|XP_002511231.1| hypothetical protein RCOM_1507060 [Ricinus communis]
gi|223550346|gb|EEF51833.1| hypothetical protein RCOM_1507060 [Ricinus communis]
Length = 50
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 490 EAKERGEQYKVYKLRRNFEMDEYNFIHWRRSLEEREALIRDIS 532
EAKERGE+YK+ KLRRN EMDEY+ +HWRRS EEREALIRDIS
Sbjct: 2 EAKERGEKYKIDKLRRNIEMDEYDLMHWRRSFEEREALIRDIS 44
>gi|303276811|ref|XP_003057699.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460356|gb|EEH57650.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 758
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
Query: 231 QWVAANKDRLEEESYKYDQDY------------YPGRRKRGKDY--EEGMYELPFYYPGQ 276
+V N D + +KYD+ + G + K Y ++ L G
Sbjct: 378 NFVGVNNDVALRDMWKYDRPFNRESLEEAVEVPSSGLMREAKSYLGDKTRTTLSKLAVGT 437
Query: 277 ICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPY-R 335
+G V + LY GA VD G DG + I +DW +R + +G V V++ A + R
Sbjct: 438 ELQGTVVALELYHGALVDCGCETDGLIKISESDWLEVRDALPIGAEVKVKVSAVHQKFWR 497
Query: 336 FRFPIEMRFVQPNIDHLI 353
+RFPIE++ ++PN+ HLI
Sbjct: 498 YRFPIELQILEPNVGHLI 515
>gi|145345919|ref|XP_001417446.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577673|gb|ABO95739.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 724
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 276 QICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDP-Y 334
Q+ +GKV + LY GA VD G D +PI DW +R HI VG + V++ R +
Sbjct: 462 QVLKGKVVAMDLYHGALVDCGTEIDALLPINETDWMTMRDHITVGTELEVKVTDTRSKWW 521
Query: 335 RFRFPIEMRFVQPNIDHLIFNR--FDFAPIFHRDEDKNPDELRRDCGRPPVPR 385
RFR+P+E+ + ++ L+ R F + + +E D GR VPR
Sbjct: 522 RFRYPLEVMPTRQDL-LLMLGRHPHPFGSPINVYAGETWEEACLDAGRKVVPR 573
>gi|255081939|ref|XP_002508188.1| predicted protein [Micromonas sp. RCC299]
gi|226523464|gb|ACO69446.1| predicted protein [Micromonas sp. RCC299]
Length = 752
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDP- 333
G+ EGK+ ++ LY GA VD G DG +PI +DW + + +G V V++ A +
Sbjct: 424 GEELEGKIVSLELYHGALVDCGCETDGLIPISEDDWPDLVDTLTMGTKVKVKVKAVHERW 483
Query: 334 YRFRFPIEMRFVQPNIDHLI 353
+RFRFPIE+ + PN+ HLI
Sbjct: 484 WRFRFPIELDILSPNVGHLI 503
>gi|302840269|ref|XP_002951690.1| hypothetical protein VOLCADRAFT_92287 [Volvox carteri f.
nagariensis]
gi|300262938|gb|EFJ47141.1| hypothetical protein VOLCADRAFT_92287 [Volvox carteri f.
nagariensis]
Length = 291
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPY 334
G++ G +T V LY G VDIG +DG +P W HI VG V+VE+ R P
Sbjct: 107 GRVYVGLITDVWLYHGVQVDIGAEFDGLIPCSEELWELAVDHIDVGEVVMVELHKLRTPG 166
Query: 335 RFRFPIEMRFVQPNIDHLIFNRFDF-APIFH 364
+R+P++++F + L+ D+ AP+ H
Sbjct: 167 LYRWPVQLKFTVRGLQDLMLPPDDYEAPVDH 197
>gi|308802664|ref|XP_003078645.1| unnamed protein product [Ostreococcus tauri]
gi|116057098|emb|CAL51525.1| unnamed protein product, partial [Ostreococcus tauri]
Length = 645
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 276 QICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDP-Y 334
Q+ +G V + LY GA +D G D +PI DW +R H+ +GM + V++ R+ +
Sbjct: 398 QVLQGTVVAIDLYHGALIDCGTEIDALLPINETDWMTMRDHVTIGMELEVKVSDLRNKWW 457
Query: 335 RFRFPIEM 342
RFR+P+E+
Sbjct: 458 RFRYPLEV 465
>gi|297807577|ref|XP_002871672.1| hypothetical protein ARALYDRAFT_909533 [Arabidopsis lyrata subsp.
lyrata]
gi|297317509|gb|EFH47931.1| hypothetical protein ARALYDRAFT_909533 [Arabidopsis lyrata subsp.
lyrata]
Length = 91
Score = 55.5 bits (132), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/31 (74%), Positives = 28/31 (90%)
Query: 584 MRDAHNKSIVGKGMVWYEMSYDDVIKQKMQR 614
M+DAHNKSIVGKG VWY+MSYDD IKQ +++
Sbjct: 1 MKDAHNKSIVGKGNVWYDMSYDDAIKQTLEK 31
>gi|430750092|ref|YP_007213000.1| 30S ribosomal protein S1 [Thermobacillus composti KWC4]
gi|430734057|gb|AGA58002.1| ribosomal protein S1 [Thermobacillus composti KWC4]
Length = 411
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 96/218 (44%), Gaps = 45/218 (20%)
Query: 143 YKKQFEIKGEIPEKLETVWAAPLLVTHVAPRDWPPRGWEVDRKELEYIREAHKLQNVRVE 202
++QFE KGE+ E LV V R + P V+R +E ++K Q +RV+
Sbjct: 118 LQEQFE-KGEVLEVTVADVVKGGLVVDVGVRGFIPASM-VERHYVEDF-SSYKGQTLRVK 174
Query: 203 IGELERKAKFEREGFNFDMYRVFLKQYNQWVAANKDRLEEESYKYDQDYYPGRRKRGKDY 262
I EL+R + N+ + + K+ LEEE Y +R+ +
Sbjct: 175 IKELDR-------------------ETNKVILSAKEVLEEE-------YEANKRRIMESL 208
Query: 263 EEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKV 319
E PGQI EG V + + GAFVDIGG+ DG V + W + H +
Sbjct: 209 E----------PGQIIEGTVQRLTPF-GAFVDIGGI-DGLVHVSELAWEHVAHPRDVVSE 256
Query: 320 GMHVIVEILAKRDPYRFRFPIEMRFVQPNIDHLIFNRF 357
G V V++L K DP + + ++ QP L ++F
Sbjct: 257 GQQVKVKVL-KVDPEAGKISLSIKAAQPGPWELAADKF 293
>gi|394989039|ref|ZP_10381873.1| hypothetical protein SCD_01455 [Sulfuricella denitrificans skB26]
gi|393791458|dbj|GAB71512.1| hypothetical protein SCD_01455 [Sulfuricella denitrificans skB26]
Length = 776
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ EL PG I EG VT V + GAFVDIG DG V I
Sbjct: 636 PGRDPRPEFKTATFQEGVEELKDLQPGMILEGVVTNVANF-GAFVDIGVHQDGLVHISAL 694
Query: 309 DWYWIR--HHI-KVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ H I K G V V++L + DP R R + MR
Sbjct: 695 AQKFVKDPHSIVKAGDVVRVKVL-EIDPIRRRIALTMRL 732
>gi|452124247|ref|ZP_21936831.1| transcription accessory protein [Bordetella holmesii F627]
gi|452127644|ref|ZP_21940224.1| transcription accessory protein [Bordetella holmesii H558]
gi|451923477|gb|EMD73618.1| transcription accessory protein [Bordetella holmesii F627]
gi|451926513|gb|EMD76646.1| transcription accessory protein [Bordetella holmesii H558]
Length = 795
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 67/155 (43%), Gaps = 21/155 (13%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ L +PG EG VT V + GAFVDIG DG V I
Sbjct: 644 PGRDPRPEFKTAQFKEGVETLNDLHPGMTLEGVVTNVANF-GAFVDIGVHQDGLVHISAL 702
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPNIDHLIFNRFDFAPIFHR 365
++ R ++VG V V++L + D R R + MR P R AP R
Sbjct: 703 AEKFVKDPRDVVRVGQTVTVKVL-EVDVPRKRVALTMRLNDPA-----EPRRAAAPRTDR 756
Query: 366 DEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLST 400
NP G+ VPR+ G P L ++
Sbjct: 757 QPTANP-------GQRGVPRRNDGGGPRSSSLANS 784
>gi|421482921|ref|ZP_15930501.1| transcription accessory protein [Achromobacter piechaudii HLE]
gi|400199232|gb|EJO32188.1| transcription accessory protein [Achromobacter piechaudii HLE]
Length = 791
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ L YPG + EG VT V + GAFVDIG DG V I
Sbjct: 644 PGRDPRPEFKTAQFKEGVETLNDLYPGMVLEGVVTNVANF-GAFVDIGVHQDGLVHISAL 702
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R ++VG V V++L + D R R + MR
Sbjct: 703 AEKFVKDPRDVVRVGQTVSVKVL-EVDAARKRVALTMRL 740
>gi|311104858|ref|YP_003977711.1| protein tex [Achromobacter xylosoxidans A8]
gi|310759547|gb|ADP14996.1| protein tex [Achromobacter xylosoxidans A8]
Length = 791
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ L YPG + EG VT V + GAFVDIG DG V I
Sbjct: 644 PGRDPRPEFKTAQFKEGVETLNDLYPGMVLEGVVTNVANF-GAFVDIGVHQDGLVHISAL 702
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R ++VG V V++L + D R R + MR
Sbjct: 703 AEKFVKDPRDVVRVGQTVSVKVL-EVDAARKRVALTMRL 740
>gi|192360642|ref|YP_001983623.1| S1 RNA binding domain-containing protein [Cellvibrio japonicus
Ueda107]
gi|190686807|gb|ACE84485.1| S1 RNA binding domain protein [Cellvibrio japonicus Ueda107]
Length = 776
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ E+ PG I EG VT V + GAFVDIG DG V I
Sbjct: 629 PGRDPRPEFKTAQFQEGVEEITDLVPGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISAL 687
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 688 SHTFIKDPRDAVKAGEIVKVKVM-EVDVPRKRIALSMRL 725
>gi|157676010|emb|CAP07846.1| putative transcriptional accessory protein [Neisseria animalis]
Length = 762
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG+ E+ PG I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTATFAEGINEIKDLQPGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SDKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|258544890|ref|ZP_05705124.1| histidine triad domain-containing protein [Cardiobacterium hominis
ATCC 15826]
gi|258519810|gb|EEV88669.1| histidine triad domain-containing protein [Cardiobacterium hominis
ATCC 15826]
Length = 769
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ PG I EG V+ V + GAFVDIG DG V I
Sbjct: 633 PGRDPRGEFQTATFAEGVHEISDLQPGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 691
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 692 ADRYVQDPRDIVKAGDVVKVKVL-EVDAERKRIALTMRL 729
>gi|293604133|ref|ZP_06686541.1| YhgF like protein [Achromobacter piechaudii ATCC 43553]
gi|292817358|gb|EFF76431.1| YhgF like protein [Achromobacter piechaudii ATCC 43553]
Length = 792
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ L YPG + EG VT V + GAFVDIG DG V I
Sbjct: 644 PGRDPRPEFKTAQFKEGVETLNDLYPGMVLEGVVTNVANF-GAFVDIGVHQDGLVHISAL 702
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R ++VG V V++L + D R R + MR
Sbjct: 703 AEKFVKDPRDVVRVGQTVSVKVL-EVDVARKRVALTMRL 740
>gi|329118647|ref|ZP_08247351.1| YhgF like protein [Neisseria bacilliformis ATCC BAA-1200]
gi|327465382|gb|EGF11663.1| YhgF like protein [Neisseria bacilliformis ATCC BAA-1200]
Length = 789
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ + G I EG V+ V + GAFVDIG DG V I
Sbjct: 641 PGRDPRGEFQTASFAEGIHEIKYLQIGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 699
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 700 SDRFVQDPREIVKAGDVVKVKVL-EVDAERKRIALTMRL 737
>gi|422323215|ref|ZP_16404255.1| tex protein [Achromobacter xylosoxidans C54]
gi|317401789|gb|EFV82404.1| tex protein [Achromobacter xylosoxidans C54]
Length = 791
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ L YPG + EG VT V + GAFVDIG DG V I
Sbjct: 644 PGRDPRPEFKTAQFKEGVETLNDLYPGMVLEGVVTNVANF-GAFVDIGVHQDGLVHISAL 702
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R ++VG V V++L + D R R + MR
Sbjct: 703 AEKFVKDPRDVVRVGQTVSVKVL-EVDVARKRVALTMRL 740
>gi|261365311|ref|ZP_05978194.1| protein YhgF [Neisseria mucosa ATCC 25996]
gi|288566239|gb|EFC87799.1| protein YhgF [Neisseria mucosa ATCC 25996]
Length = 757
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|359797387|ref|ZP_09299971.1| transcription accessory protein [Achromobacter arsenitoxydans SY8]
gi|359364498|gb|EHK66211.1| transcription accessory protein [Achromobacter arsenitoxydans SY8]
Length = 791
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ L YPG + EG VT V + GAFVDIG DG V I
Sbjct: 644 PGRDPRPEFKTAQFKEGVETLNDLYPGMVLEGVVTNVANF-GAFVDIGVHQDGLVHISAL 702
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R ++VG V V++L + D R R + MR
Sbjct: 703 AEKFVKDPRDVVRVGQTVSVKVL-EVDVARKRVALTMRL 740
>gi|419797567|ref|ZP_14323038.1| protein YhgF [Neisseria sicca VK64]
gi|385697899|gb|EIG28305.1| protein YhgF [Neisseria sicca VK64]
Length = 764
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|33592276|ref|NP_879920.1| transcription accessory protein [Bordetella pertussis Tohama I]
gi|384203579|ref|YP_005589318.1| transcription accessory protein [Bordetella pertussis CS]
gi|34978385|sp|Q45388.2|TEX_BORPE RecName: Full=Protein tex
gi|33571921|emb|CAE41441.1| transcription accessory protein [Bordetella pertussis Tohama I]
gi|332381693|gb|AEE66540.1| transcription accessory protein [Bordetella pertussis CS]
Length = 791
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ L +PG + EG VT V + GAFVDIG DG V I
Sbjct: 644 PGRDPRPEFKTAQFKEGVETLNDLFPGMVLEGVVTNVANF-GAFVDIGVHQDGLVHISAL 702
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R ++VG V V++L + D R R + MR
Sbjct: 703 AEKFVKDPRDVVRVGQTVTVKVL-EVDVARKRVALTMRL 740
>gi|218767225|ref|YP_002341737.1| transcriptional accessory protein [Neisseria meningitidis Z2491]
gi|385339026|ref|YP_005892899.1| putative RNA-binding protein [Neisseria meningitidis WUE 2594]
gi|421558100|ref|ZP_16003985.1| yhgF like protein [Neisseria meningitidis 92045]
gi|433474558|ref|ZP_20431906.1| S1 RNA binding domain protein [Neisseria meningitidis 88050]
gi|433478810|ref|ZP_20436110.1| S1 RNA binding domain protein [Neisseria meningitidis 63041]
gi|433514557|ref|ZP_20471334.1| S1 RNA binding domain protein [Neisseria meningitidis 2004090]
gi|433516662|ref|ZP_20473416.1| S1 RNA binding domain protein [Neisseria meningitidis 96023]
gi|433518862|ref|ZP_20475590.1| S1 RNA binding domain protein [Neisseria meningitidis 65014]
gi|433522985|ref|ZP_20479659.1| S1 RNA binding domain protein [Neisseria meningitidis 97020]
gi|433527240|ref|ZP_20483853.1| S1 RNA binding domain protein [Neisseria meningitidis NM3652]
gi|433529337|ref|ZP_20485937.1| S1 RNA binding domain protein [Neisseria meningitidis NM3642]
gi|433531454|ref|ZP_20488024.1| S1 RNA binding domain protein [Neisseria meningitidis 2007056]
gi|433533668|ref|ZP_20490217.1| S1 RNA binding domain protein [Neisseria meningitidis 2001212]
gi|433540016|ref|ZP_20496474.1| S1 RNA binding domain protein [Neisseria meningitidis 63006]
gi|9979534|sp|P57072.1|YHGF_NEIMA RecName: Full=Uncharacterized protein NMA0194
gi|121051233|emb|CAM07508.1| putative transcriptional accessory protein [Neisseria meningitidis
Z2491]
gi|302028148|gb|ADK90962.1| unknown [Neisseria meningitidis]
gi|319411440|emb|CBY91852.1| putative RNA-binding protein [Neisseria meningitidis WUE 2594]
gi|402338872|gb|EJU74101.1| yhgF like protein [Neisseria meningitidis 92045]
gi|432212618|gb|ELK68553.1| S1 RNA binding domain protein [Neisseria meningitidis 88050]
gi|432219018|gb|ELK74868.1| S1 RNA binding domain protein [Neisseria meningitidis 63041]
gi|432256454|gb|ELL11776.1| S1 RNA binding domain protein [Neisseria meningitidis 96023]
gi|432256691|gb|ELL12011.1| S1 RNA binding domain protein [Neisseria meningitidis 2004090]
gi|432256971|gb|ELL12280.1| S1 RNA binding domain protein [Neisseria meningitidis 65014]
gi|432263064|gb|ELL18292.1| S1 RNA binding domain protein [Neisseria meningitidis 97020]
gi|432267309|gb|ELL22487.1| S1 RNA binding domain protein [Neisseria meningitidis NM3652]
gi|432269719|gb|ELL24873.1| S1 RNA binding domain protein [Neisseria meningitidis 2007056]
gi|432269988|gb|ELL25135.1| S1 RNA binding domain protein [Neisseria meningitidis NM3642]
gi|432274221|gb|ELL29314.1| S1 RNA binding domain protein [Neisseria meningitidis 2001212]
gi|432278225|gb|ELL33268.1| S1 RNA binding domain protein [Neisseria meningitidis 63006]
Length = 757
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|33602576|ref|NP_890136.1| transcription accessory protein [Bordetella bronchiseptica RB50]
gi|410421104|ref|YP_006901553.1| transcription accessory protein [Bordetella bronchiseptica MO149]
gi|410473697|ref|YP_006896978.1| transcription accessory protein [Bordetella parapertussis Bpp5]
gi|412342037|ref|YP_006970792.1| transcription accessory protein [Bordetella bronchiseptica 253]
gi|427815644|ref|ZP_18982708.1| transcription accessory protein [Bordetella bronchiseptica 1289]
gi|427818204|ref|ZP_18985267.1| transcription accessory protein [Bordetella bronchiseptica D445]
gi|427825943|ref|ZP_18993005.1| transcription accessory protein [Bordetella bronchiseptica Bbr77]
gi|33577015|emb|CAE34095.1| transcription accessory protein [Bordetella bronchiseptica RB50]
gi|408443807|emb|CCJ50498.1| transcription accessory protein [Bordetella parapertussis Bpp5]
gi|408448399|emb|CCJ60080.1| transcription accessory protein [Bordetella bronchiseptica MO149]
gi|408771871|emb|CCJ56677.1| transcription accessory protein [Bordetella bronchiseptica 253]
gi|410566644|emb|CCN24212.1| transcription accessory protein [Bordetella bronchiseptica 1289]
gi|410569204|emb|CCN17291.1| transcription accessory protein [Bordetella bronchiseptica D445]
gi|410591208|emb|CCN06306.1| transcription accessory protein [Bordetella bronchiseptica Bbr77]
Length = 791
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ L +PG + EG VT V + GAFVDIG DG V I
Sbjct: 644 PGRDPRPEFKTAQFKEGVETLNDLFPGMVLEGVVTNVANF-GAFVDIGVHQDGLVHISAL 702
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R ++VG V V++L + D R R + MR
Sbjct: 703 AEKFVKDPRDVVRVGQTVTVKVL-EVDVARKRVALTMRL 740
>gi|33597728|ref|NP_885371.1| transcription accessory protein [Bordetella parapertussis 12822]
gi|33574156|emb|CAE38486.1| transcription accessory protein [Bordetella parapertussis]
Length = 791
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ L +PG + EG VT V + GAFVDIG DG V I
Sbjct: 644 PGRDPRPEFKTAQFKEGVETLNDLFPGMVLEGVVTNVANF-GAFVDIGVHQDGLVHISAL 702
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R ++VG V V++L + D R R + MR
Sbjct: 703 AEKFVKDPRDVVRVGQTVTVKVL-EVDVARKRVALTMRL 740
>gi|408415502|ref|YP_006626209.1| transcription accessory protein [Bordetella pertussis 18323]
gi|401777672|emb|CCJ62999.1| transcription accessory protein [Bordetella pertussis 18323]
Length = 791
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ L +PG + EG VT V + GAFVDIG DG V I
Sbjct: 644 PGRDPRPEFKTAQFKEGVETLNDLFPGMVLEGVVTNVANF-GAFVDIGVHQDGLVHISAL 702
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R ++VG V V++L + D R R + MR
Sbjct: 703 AEKFVKDPRDVVRVGQTVTVKVL-EVDVARKRVALTMRL 740
>gi|433495786|ref|ZP_20452836.1| S1 RNA binding domain protein [Neisseria meningitidis M7089]
gi|433497777|ref|ZP_20454797.1| S1 RNA binding domain protein [Neisseria meningitidis M7124]
gi|433499859|ref|ZP_20456853.1| S1 RNA binding domain protein [Neisseria meningitidis NM174]
gi|433508307|ref|ZP_20465193.1| S1 RNA binding domain protein [Neisseria meningitidis 12888]
gi|432237428|gb|ELK93022.1| S1 RNA binding domain protein [Neisseria meningitidis M7124]
gi|432237812|gb|ELK93402.1| S1 RNA binding domain protein [Neisseria meningitidis M7089]
gi|432237997|gb|ELK93581.1| S1 RNA binding domain protein [Neisseria meningitidis NM174]
gi|432249958|gb|ELL05356.1| S1 RNA binding domain protein [Neisseria meningitidis 12888]
Length = 757
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|421537094|ref|ZP_15983284.1| yhgF like protein [Neisseria meningitidis 93003]
gi|352289330|gb|AEQ62014.1| Tex [Neisseria meningitidis]
gi|402320091|gb|EJU55589.1| yhgF like protein [Neisseria meningitidis 93003]
Length = 757
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|416211309|ref|ZP_11621338.1| S1 RNA binding domain protein [Neisseria meningitidis M01-240013]
gi|416211424|ref|ZP_11621350.1| S1 RNA binding domain protein [Neisseria meningitidis M01-240013]
gi|421539259|ref|ZP_15985421.1| yhgF like protein [Neisseria meningitidis 93004]
gi|325145402|gb|EGC67678.1| S1 RNA binding domain protein [Neisseria meningitidis M01-240013]
gi|325145448|gb|EGC67723.1| S1 RNA binding domain protein [Neisseria meningitidis M01-240013]
gi|402321839|gb|EJU57310.1| yhgF like protein [Neisseria meningitidis 93004]
Length = 757
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|255066133|ref|ZP_05317988.1| protein YhgF [Neisseria sicca ATCC 29256]
gi|255049678|gb|EET45142.1| protein YhgF [Neisseria sicca ATCC 29256]
Length = 756
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNRFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|1477402|emb|CAA64672.1| tex [Bordetella pertussis Tohama I]
Length = 791
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ L +PG + EG VT V + GAFVDIG DG V I
Sbjct: 644 PGRDPRPEFKTAQFKEGVETLNDLFPGMVLEGVVTNVANF-GAFVDIGVHQDGLVHISAL 702
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R ++VG V V++L + D R R + MR
Sbjct: 703 AEKFVKDPRDVVRVGQTVTVKVL-EVDVARKRVALTMRL 740
>gi|433535666|ref|ZP_20492186.1| S1 RNA binding domain protein [Neisseria meningitidis 77221]
gi|432276677|gb|ELL31732.1| S1 RNA binding domain protein [Neisseria meningitidis 77221]
Length = 757
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|423016342|ref|ZP_17007063.1| transcription accessory protein [Achromobacter xylosoxidans AXX-A]
gi|338780596|gb|EGP45001.1| transcription accessory protein [Achromobacter xylosoxidans AXX-A]
Length = 793
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ L YPG + EG VT V + GAFVDIG DG V I
Sbjct: 644 PGRDPRPEFKTAQFKEGVETLNDLYPGMVLEGVVTNVANF-GAFVDIGVHQDGLVHISAL 702
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R ++VG V V++L + D R R + MR
Sbjct: 703 AEKFVKDPRDVVRVGQTVSVKVL-EVDVARKRVALTMRM 740
>gi|433468282|ref|ZP_20425721.1| S1 RNA binding domain protein [Neisseria meningitidis 98080]
gi|352289422|gb|AEQ62052.1| Tex [Neisseria meningitidis]
gi|432206687|gb|ELK62690.1| S1 RNA binding domain protein [Neisseria meningitidis 98080]
Length = 757
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|421560235|ref|ZP_16006094.1| S1 RNA binding domain protein [Neisseria meningitidis NM2657]
gi|254671507|emb|CBA09093.1| putative transcription accessory protein [Neisseria meningitidis
alpha153]
gi|402340408|gb|EJU75608.1| S1 RNA binding domain protein [Neisseria meningitidis NM2657]
Length = 757
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|421553826|ref|ZP_15999779.1| yhgF like protein [Neisseria meningitidis 98008]
gi|402334393|gb|EJU69682.1| yhgF like protein [Neisseria meningitidis 98008]
Length = 757
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|121633956|ref|YP_974201.1| transcriptional accessory protein [Neisseria meningitidis FAM18]
gi|120865662|emb|CAM09383.1| putative transcriptional accessory protein [Neisseria meningitidis
FAM18]
Length = 758
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 615 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 673
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 674 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 711
>gi|298370332|ref|ZP_06981648.1| S1 RNA binding domain protein [Neisseria sp. oral taxon 014 str.
F0314]
gi|298281792|gb|EFI23281.1| S1 RNA binding domain protein [Neisseria sp. oral taxon 014 str.
F0314]
Length = 757
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNRFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|385339122|ref|YP_005892994.1| S1 RNA binding domain-containing protein [Neisseria meningitidis
G2136]
gi|325197366|gb|ADY92822.1| S1 RNA binding domain protein [Neisseria meningitidis G2136]
Length = 757
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|421549636|ref|ZP_15995647.1| yhgF like protein [Neisseria meningitidis 69166]
gi|433470367|ref|ZP_20427767.1| S1 RNA binding domain protein [Neisseria meningitidis 68094]
gi|433476648|ref|ZP_20433976.1| S1 RNA binding domain protein [Neisseria meningitidis 70012]
gi|433520862|ref|ZP_20477565.1| S1 RNA binding domain protein [Neisseria meningitidis 61103]
gi|433525081|ref|ZP_20481728.1| S1 RNA binding domain protein [Neisseria meningitidis 69096]
gi|433537830|ref|ZP_20494317.1| S1 RNA binding domain protein [Neisseria meningitidis 70030]
gi|402332285|gb|EJU67614.1| yhgF like protein [Neisseria meningitidis 69166]
gi|432211800|gb|ELK67744.1| S1 RNA binding domain protein [Neisseria meningitidis 68094]
gi|432217801|gb|ELK73666.1| S1 RNA binding domain protein [Neisseria meningitidis 70012]
gi|432262845|gb|ELL18077.1| S1 RNA binding domain protein [Neisseria meningitidis 61103]
gi|432263592|gb|ELL18808.1| S1 RNA binding domain protein [Neisseria meningitidis 69096]
gi|432275970|gb|ELL31032.1| S1 RNA binding domain protein [Neisseria meningitidis 70030]
Length = 757
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|416159180|ref|ZP_11605656.1| S1 RNA binding domain protein [Neisseria meningitidis N1568]
gi|416176214|ref|ZP_11609515.1| S1 RNA binding domain protein [Neisseria meningitidis M6190]
gi|416190834|ref|ZP_11615945.1| S1 RNA binding domain protein [Neisseria meningitidis ES14902]
gi|421564526|ref|ZP_16010325.1| yhgF like protein [Neisseria meningitidis NM3081]
gi|433466201|ref|ZP_20423665.1| S1 RNA binding domain protein [Neisseria meningitidis 87255]
gi|433472461|ref|ZP_20429832.1| S1 RNA binding domain protein [Neisseria meningitidis 97021]
gi|433480889|ref|ZP_20438162.1| S1 RNA binding domain protein [Neisseria meningitidis 2006087]
gi|433483013|ref|ZP_20440254.1| S1 RNA binding domain protein [Neisseria meningitidis 2002038]
gi|433485105|ref|ZP_20442313.1| S1 RNA binding domain protein [Neisseria meningitidis 97014]
gi|433491539|ref|ZP_20448642.1| S1 RNA binding domain protein [Neisseria meningitidis NM586]
gi|325129123|gb|EGC51971.1| S1 RNA binding domain protein [Neisseria meningitidis N1568]
gi|325133149|gb|EGC55820.1| S1 RNA binding domain protein [Neisseria meningitidis M6190]
gi|325138765|gb|EGC61317.1| S1 RNA binding domain protein [Neisseria meningitidis ES14902]
gi|402346123|gb|EJU81227.1| yhgF like protein [Neisseria meningitidis NM3081]
gi|432205524|gb|ELK61552.1| S1 RNA binding domain protein [Neisseria meningitidis 87255]
gi|432212598|gb|ELK68534.1| S1 RNA binding domain protein [Neisseria meningitidis 97021]
gi|432219509|gb|ELK75353.1| S1 RNA binding domain protein [Neisseria meningitidis 2006087]
gi|432224171|gb|ELK79943.1| S1 RNA binding domain protein [Neisseria meningitidis 2002038]
gi|432225064|gb|ELK80819.1| S1 RNA binding domain protein [Neisseria meningitidis 97014]
gi|432231224|gb|ELK86891.1| S1 RNA binding domain protein [Neisseria meningitidis NM586]
Length = 757
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|225025370|ref|ZP_03714562.1| hypothetical protein EIKCOROL_02268 [Eikenella corrodens ATCC
23834]
gi|224941814|gb|EEG23023.1| hypothetical protein EIKCOROL_02268 [Eikenella corrodens ATCC
23834]
Length = 758
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|418289525|ref|ZP_12901801.1| S1 RNA binding domain protein [Neisseria meningitidis NM220]
gi|421541418|ref|ZP_15987538.1| yhgF like protein [Neisseria meningitidis NM255]
gi|372203376|gb|EHP17064.1| S1 RNA binding domain protein [Neisseria meningitidis NM220]
gi|402320112|gb|EJU55609.1| yhgF like protein [Neisseria meningitidis NM255]
Length = 757
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|385854260|ref|YP_005900773.1| S1 RNA binding domain-containing protein [Neisseria meningitidis
M01-240355]
gi|325203201|gb|ADY98654.1| S1 RNA binding domain protein [Neisseria meningitidis M01-240355]
Length = 757
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|416181124|ref|ZP_11611479.1| S1 RNA binding domain protein [Neisseria meningitidis M13399]
gi|325135189|gb|EGC57814.1| S1 RNA binding domain protein [Neisseria meningitidis M13399]
Length = 757
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|254805860|ref|YP_003084081.1| transcriptional accessory protein [Neisseria meningitidis alpha14]
gi|254669402|emb|CBA08583.1| probable transcriptional accessory protein [Neisseria meningitidis
alpha14]
Length = 757
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|261379513|ref|ZP_05984086.1| protein YhgF [Neisseria subflava NJ9703]
gi|284797976|gb|EFC53323.1| protein YhgF [Neisseria subflava NJ9703]
Length = 757
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|269214158|ref|ZP_05983718.2| protein YhgF [Neisseria cinerea ATCC 14685]
gi|269144370|gb|EEZ70788.1| protein YhgF [Neisseria cinerea ATCC 14685]
Length = 761
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 618 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 676
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 677 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 714
>gi|319638887|ref|ZP_07993645.1| hypothetical protein HMPREF0604_01269 [Neisseria mucosa C102]
gi|317399791|gb|EFV80454.1| hypothetical protein HMPREF0604_01269 [Neisseria mucosa C102]
Length = 757
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|421566549|ref|ZP_16012293.1| yhgF like protein [Neisseria meningitidis NM3001]
gi|402345153|gb|EJU80277.1| yhgF like protein [Neisseria meningitidis NM3001]
Length = 757
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGAFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|325267676|ref|ZP_08134327.1| YhgF like protein [Kingella denitrificans ATCC 33394]
gi|324980800|gb|EGC16461.1| YhgF like protein [Kingella denitrificans ATCC 33394]
Length = 758
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|421556066|ref|ZP_16001983.1| yhgF like protein [Neisseria meningitidis 80179]
gi|402337919|gb|EJU73158.1| yhgF like protein [Neisseria meningitidis 80179]
Length = 757
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|418287280|ref|ZP_12899899.1| S1 RNA binding domain protein [Neisseria meningitidis NM233]
gi|372203935|gb|EHP17526.1| S1 RNA binding domain protein [Neisseria meningitidis NM233]
Length = 757
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|1098475|gb|AAC37046.1| region E; orf; homologous to E. coli o622, Accession Number U18997
[Neisseria meningitidis]
Length = 757
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|241758917|ref|ZP_04757029.1| protein tex [Neisseria flavescens SK114]
gi|241320738|gb|EER56971.1| protein tex [Neisseria flavescens SK114]
Length = 757
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|59802211|ref|YP_208923.1| hypothetical protein NGO1895 [Neisseria gonorrhoeae FA 1090]
gi|240015149|ref|ZP_04722062.1| hypothetical protein NgonD_11018 [Neisseria gonorrhoeae DGI18]
gi|240017597|ref|ZP_04724137.1| hypothetical protein NgonFA_10626 [Neisseria gonorrhoeae FA6140]
gi|240122220|ref|ZP_04735182.1| hypothetical protein NgonPI_10740 [Neisseria gonorrhoeae PID24-1]
gi|254494775|ref|ZP_05107946.1| transcriptional accessory protein [Neisseria gonorrhoeae 1291]
gi|268597839|ref|ZP_06132006.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268600083|ref|ZP_06134250.1| transcriptional accessory protein [Neisseria gonorrhoeae MS11]
gi|268683144|ref|ZP_06150006.1| transcriptional accessory protein [Neisseria gonorrhoeae PID332]
gi|293398254|ref|ZP_06642459.1| hypothetical protein NGNG_01814 [Neisseria gonorrhoeae F62]
gi|59719106|gb|AAW90511.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|226513815|gb|EEH63160.1| transcriptional accessory protein [Neisseria gonorrhoeae 1291]
gi|268551627|gb|EEZ46646.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
gi|268584214|gb|EEZ48890.1| transcriptional accessory protein [Neisseria gonorrhoeae MS11]
gi|268623428|gb|EEZ55828.1| transcriptional accessory protein [Neisseria gonorrhoeae PID332]
gi|291611517|gb|EFF40587.1| hypothetical protein NGNG_01814 [Neisseria gonorrhoeae F62]
Length = 757
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGAFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|268683184|ref|ZP_06150046.1| transcriptional accessory protein [Neisseria gonorrhoeae SK-92-679]
gi|268687573|ref|ZP_06154435.1| transcriptional accessory protein [Neisseria gonorrhoeae
SK-93-1035]
gi|268623468|gb|EEZ55868.1| transcriptional accessory protein [Neisseria gonorrhoeae SK-92-679]
gi|268627857|gb|EEZ60257.1| transcriptional accessory protein [Neisseria gonorrhoeae
SK-93-1035]
Length = 757
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGAFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|304388872|ref|ZP_07370922.1| YhgF like protein [Neisseria meningitidis ATCC 13091]
gi|304337165|gb|EFM03349.1| YhgF like protein [Neisseria meningitidis ATCC 13091]
Length = 757
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|416199468|ref|ZP_11619404.1| S1 RNA binding domain protein [Neisseria meningitidis 961-5945]
gi|416199505|ref|ZP_11619410.1| S1 RNA binding domain protein [Neisseria meningitidis 961-5945]
gi|416199630|ref|ZP_11619428.1| S1 RNA binding domain protein [Neisseria meningitidis 961-5945]
gi|325143290|gb|EGC65626.1| S1 RNA binding domain protein [Neisseria meningitidis 961-5945]
gi|325143323|gb|EGC65657.1| S1 RNA binding domain protein [Neisseria meningitidis 961-5945]
gi|325143350|gb|EGC65683.1| S1 RNA binding domain protein [Neisseria meningitidis 961-5945]
Length = 757
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|294669724|ref|ZP_06734790.1| hypothetical protein NEIELOOT_01624 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291308290|gb|EFE49533.1| hypothetical protein NEIELOOT_01624 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 758
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|163856154|ref|YP_001630452.1| transcription accessory protein [Bordetella petrii DSM 12804]
gi|163259882|emb|CAP42183.1| transcription accessory protein [Bordetella petrii]
Length = 791
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ L YPG + EG VT V + GAFVDIG DG V I
Sbjct: 644 PGRDPRPEFKTAQFKDGVETLNDLYPGMVLEGVVTNVANF-GAFVDIGVHQDGLVHISAL 702
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R ++VG V V++L + D R R + MR
Sbjct: 703 AEKFVKDPRDVVRVGQTVTVKVL-EVDVARKRVALTMRL 740
>gi|157676008|emb|CAP07845.1| putative transcriptional accessory protein [Neisseria sicca ATCC
29256]
Length = 757
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|15676011|ref|NP_273139.1| transcriptional accessory protein Tex [Neisseria meningitidis MC58]
gi|385850345|ref|YP_005896860.1| S1 RNA binding domain-containing protein [Neisseria meningitidis
M04-240196]
gi|385852297|ref|YP_005898811.1| S1 RNA binding domain-containing protein [Neisseria meningitidis
H44/76]
gi|416194610|ref|ZP_11617380.1| S1 RNA binding domain protein [Neisseria meningitidis CU385]
gi|427826169|ref|ZP_18993228.1| protein yhgF [Neisseria meningitidis H44/76]
gi|433464071|ref|ZP_20421566.1| S1 RNA binding domain protein [Neisseria meningitidis NM422]
gi|433487266|ref|ZP_20444445.1| S1 RNA binding domain protein [Neisseria meningitidis M13255]
gi|433489439|ref|ZP_20446578.1| S1 RNA binding domain protein [Neisseria meningitidis NM418]
gi|433504042|ref|ZP_20460987.1| S1 RNA binding domain protein [Neisseria meningitidis 9506]
gi|433506123|ref|ZP_20463044.1| S1 RNA binding domain protein [Neisseria meningitidis 9757]
gi|433510360|ref|ZP_20467205.1| S1 RNA binding domain protein [Neisseria meningitidis 4119]
gi|9978037|sp|Q51152.2|YHGF_NEIMB RecName: Full=Uncharacterized protein NMB0075
gi|7225295|gb|AAF40542.1| putative transcriptional accessory protein Tex [Neisseria
meningitidis MC58]
gi|316985915|gb|EFV64854.1| protein yhgF [Neisseria meningitidis H44/76]
gi|325141225|gb|EGC63724.1| S1 RNA binding domain protein [Neisseria meningitidis CU385]
gi|325199301|gb|ADY94756.1| S1 RNA binding domain protein [Neisseria meningitidis H44/76]
gi|325205168|gb|ADZ00621.1| S1 RNA binding domain protein [Neisseria meningitidis M04-240196]
gi|432206109|gb|ELK62122.1| S1 RNA binding domain protein [Neisseria meningitidis NM422]
gi|432226031|gb|ELK81764.1| S1 RNA binding domain protein [Neisseria meningitidis M13255]
gi|432230435|gb|ELK86110.1| S1 RNA binding domain protein [Neisseria meningitidis NM418]
gi|432243425|gb|ELK98936.1| S1 RNA binding domain protein [Neisseria meningitidis 9506]
gi|432244398|gb|ELK99888.1| S1 RNA binding domain protein [Neisseria meningitidis 9757]
gi|432250716|gb|ELL06104.1| S1 RNA binding domain protein [Neisseria meningitidis 4119]
Length = 757
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|157676002|emb|CAP07842.1| putative transcriptional accessory protein [Neisseria cinerea]
Length = 773
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 630 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 688
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 689 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 726
>gi|349610825|ref|ZP_08890149.1| hypothetical protein HMPREF1028_02124 [Neisseria sp. GT4A_CT1]
gi|348615543|gb|EGY65058.1| hypothetical protein HMPREF1028_02124 [Neisseria sp. GT4A_CT1]
Length = 757
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|389604692|emb|CCA43618.1| Protein tex [Neisseria meningitidis alpha522]
Length = 757
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|161869094|ref|YP_001598260.1| transcriptional accessory protein Tex [Neisseria meningitidis
053442]
gi|161594647|gb|ABX72307.1| transcriptional accessory protein Tex, putative [Neisseria
meningitidis 053442]
Length = 758
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 615 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 673
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 674 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 711
>gi|157676014|emb|CAP07848.1| putative transcriptional accessory protein [Neisseria macacae]
Length = 757
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|340363919|ref|ZP_08686230.1| YhgF like protein [Neisseria macacae ATCC 33926]
gi|339884623|gb|EGQ74393.1| YhgF like protein [Neisseria macacae ATCC 33926]
Length = 757
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|433501981|ref|ZP_20458954.1| S1 RNA binding domain protein [Neisseria meningitidis NM126]
gi|432243736|gb|ELK99242.1| S1 RNA binding domain protein [Neisseria meningitidis NM126]
Length = 757
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|385323234|ref|YP_005877673.1| putative RNA-binding protein [Neisseria meningitidis 8013]
gi|261391621|emb|CAX49059.1| putative RNA-binding protein [Neisseria meningitidis 8013]
Length = 757
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|268604688|ref|ZP_06138855.1| transcriptional accessory protein [Neisseria gonorrhoeae PID1]
gi|268588819|gb|EEZ53495.1| transcriptional accessory protein [Neisseria gonorrhoeae PID1]
Length = 757
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGAFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGIHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|383780632|ref|YP_005465198.1| putative transcription accessory protein [Actinoplanes
missouriensis 431]
gi|381373864|dbj|BAL90682.1| putative transcription accessory protein [Actinoplanes
missouriensis 431]
Length = 809
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG I EG+VT V + GAFVDIG DG V +
Sbjct: 622 PGRDPRPAFTTATFAEGVEKIADLSPGMILEGQVTNVAAF-GAFVDIGVHQDGLVHVSAL 680
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V +L + DP R R + MR
Sbjct: 681 SDKFVQDPREVVKSGDVVKVRVL-EVDPVRKRISLSMRL 718
>gi|421562307|ref|ZP_16008135.1| yhgF like protein [Neisseria meningitidis NM2795]
gi|421907704|ref|ZP_16337579.1| Transcriptional accessory protein [Neisseria meningitidis alpha704]
gi|393291373|emb|CCI73580.1| Transcriptional accessory protein [Neisseria meningitidis alpha704]
gi|402343248|gb|EJU78400.1| yhgF like protein [Neisseria meningitidis NM2795]
Length = 757
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGAFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|194099852|ref|YP_002002989.1| hypothetical protein NGK_2364 [Neisseria gonorrhoeae NCCP11945]
gi|268593716|ref|ZP_06127883.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268602424|ref|ZP_06136591.1| transcriptional accessory protein [Neisseria gonorrhoeae PID18]
gi|385336777|ref|YP_005890724.1| hypothetical protein NGTW08_1906 [Neisseria gonorrhoeae
TCDC-NG08107]
gi|193935142|gb|ACF30966.1| Hypothetical protein NGK_2364 [Neisseria gonorrhoeae NCCP11945]
gi|268547105|gb|EEZ42523.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02]
gi|268586555|gb|EEZ51231.1| transcriptional accessory protein [Neisseria gonorrhoeae PID18]
gi|317165320|gb|ADV08861.1| hypothetical protein NGTW08_1906 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 757
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGAFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPRDVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|157676012|emb|CAP07847.1| putative transcriptional accessory protein [Neisseria iguanae]
Length = 764
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTATFAEGIHEIKDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|313667392|ref|YP_004047676.1| RNA-associated protein [Neisseria lactamica 020-06]
gi|313004854|emb|CBN86280.1| putative RNA-associated protein [Neisseria lactamica 020-06]
Length = 757
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGAFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|359778103|ref|ZP_09281374.1| putative transcription accessory protein [Arthrobacter globiformis
NBRC 12137]
gi|359304566|dbj|GAB15203.1| putative transcription accessory protein [Arthrobacter globiformis
NBRC 12137]
Length = 890
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAFVD+G DG V +
Sbjct: 689 PGRDPRPAFKAASFSEGIEKISDLKPGMVLEGTVTNVAAF-GAFVDVGVHQDGLVHVSAL 747
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + DP R R + +R
Sbjct: 748 ANRFVADPREVVKSGQVVRVKVL-EADPERKRISLTLRL 785
>gi|329122447|ref|ZP_08251034.1| YhgF like protein [Haemophilus aegyptius ATCC 11116]
gi|327473729|gb|EGF19148.1| YhgF like protein [Haemophilus aegyptius ATCC 11116]
Length = 773
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ + EG+ E+ PG I EG VT V + GAFVDIG DG V I
Sbjct: 628 PGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 686
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+D + H +K G V V++L + D R R + MR
Sbjct: 687 SDKFVEDPHQVVKTGNIVKVKVL-EVDVSRKRIALTMRL 724
>gi|254673894|emb|CBA09677.1| putative transcription accessory protein [Neisseria meningitidis
alpha275]
Length = 757
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEIGDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|291042720|ref|ZP_06568461.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
gi|291013154|gb|EFE05120.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
Length = 757
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGAFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPRDVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|119962080|ref|YP_946901.1| transcriptional accessory protein [Arthrobacter aurescens TC1]
gi|119948939|gb|ABM07850.1| putative transcriptional accessory protein [Arthrobacter aurescens
TC1]
Length = 818
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG I EG VT V + GAFVD+G DG V +
Sbjct: 633 PGRDPRPAFKAASFSEGIEKISDLKPGMILEGTVTNVAAF-GAFVDVGVHQDGLVHVSAL 691
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + DP R R + +R
Sbjct: 692 SNKFVSDPREIVKSGQVVRVKVL-EADPERKRISLTLRL 729
>gi|319775511|ref|YP_004137999.1| transcriptional accessory protein [Haemophilus influenzae F3047]
gi|317450102|emb|CBY86316.1| predicted transcriptional accessory protein [Haemophilus influenzae
F3047]
Length = 770
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ + EG+ E+ PG I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+D + H +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGNIVKVKVL-EVDVSRKRIALTMRL 721
>gi|187477713|ref|YP_785737.1| transcription accessory protein [Bordetella avium 197N]
gi|115422299|emb|CAJ48823.1| transcription accessory protein [Bordetella avium 197N]
Length = 790
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ L +PG + EG VT V + GAFVDIG DG V I
Sbjct: 644 PGRDPRPEFKTAQFKEGVETLKDLHPGMLLEGVVTNVANF-GAFVDIGVHQDGLVHISAL 702
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R ++VG V V++L + D R R + MR
Sbjct: 703 AEKFVKDPRDVVRVGQTVTVKVL-EVDVQRKRVALTMRL 740
>gi|403526137|ref|YP_006661024.1| protein Tex [Arthrobacter sp. Rue61a]
gi|403228564|gb|AFR27986.1| protein Tex [Arthrobacter sp. Rue61a]
Length = 840
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG I EG VT V + GAFVD+G DG V +
Sbjct: 655 PGRDPRPAFKAASFSEGIEKISDLKPGMILEGTVTNVAAF-GAFVDVGVHQDGLVHVSAL 713
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + DP R R + +R
Sbjct: 714 SNKFVSDPREIVKSGQVVRVKVL-EADPERKRISLTLRL 751
>gi|386850278|ref|YP_006268291.1| transcriptional accessory protein [Actinoplanes sp. SE50/110]
gi|359837782|gb|AEV86223.1| Transcriptional accessory protein [Actinoplanes sp. SE50/110]
Length = 839
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG I EG+VT V + GAFVDIG DG V +
Sbjct: 645 PGRDPRPAFTTATFAEGVEKIADLKPGMILEGQVTNVAAF-GAFVDIGVHQDGLVHVSAL 703
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V +L + DP R R + MR
Sbjct: 704 SEKFVQDPREVVKSGDVVKVRVL-EVDPVRKRISLTMRL 741
>gi|296315141|ref|ZP_06865082.1| protein YhgF [Neisseria polysaccharea ATCC 43768]
gi|296837946|gb|EFH21884.1| protein YhgF [Neisseria polysaccharea ATCC 43768]
Length = 757
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDVARKRIALTMRL 710
>gi|385327444|ref|YP_005881747.1| putative transcriptional accessory protein [Neisseria meningitidis
alpha710]
gi|308388296|gb|ADO30616.1| putative transcriptional accessory protein [Neisseria meningitidis
alpha710]
Length = 757
Score = 49.7 bits (117), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGAFQTASFAEGIHEIGDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|116669460|ref|YP_830393.1| RNA-binding S1 domain-containing protein [Arthrobacter sp. FB24]
gi|116609569|gb|ABK02293.1| RNA binding S1 domain protein [Arthrobacter sp. FB24]
Length = 861
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG I EG VT V + GAFVD+G DG V +
Sbjct: 666 PGRDPRPAFAAAKFSEGIEKISDLRPGMILEGTVTNVAAF-GAFVDVGVHQDGLVHVSAL 724
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + DP R R + +R
Sbjct: 725 ANRFVSDPREVVKSGQVVRVKVL-EADPERKRISLTLRL 762
>gi|427400099|ref|ZP_18891337.1| competence protein ComEA helix-hairpin-helix repeat region
[Massilia timonae CCUG 45783]
gi|425720839|gb|EKU83754.1| competence protein ComEA helix-hairpin-helix repeat region
[Massilia timonae CCUG 45783]
Length = 784
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ E+ P I EG VT V + GAFVDIG DG V I
Sbjct: 638 PGRDPRPEFITATFKEGVEEISDLRPDMILEGVVTNVAAF-GAFVDIGVHQDGLVHISAL 696
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V++L + DP R R + MR
Sbjct: 697 SNTFVKDPHTVVKAGQVVKVKVL-EVDPKRKRIALTMRL 734
>gi|385341056|ref|YP_005894927.1| S1 RNA binding domain-containing protein [Neisseria meningitidis
M01-240149]
gi|385856232|ref|YP_005902744.1| S1 RNA binding domain-containing protein [Neisseria meningitidis
NZ-05/33]
gi|325201262|gb|ADY96716.1| S1 RNA binding domain protein [Neisseria meningitidis M01-240149]
gi|325207121|gb|ADZ02573.1| S1 RNA binding domain protein [Neisseria meningitidis NZ-05/33]
Length = 757
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGAFQTASFAEGIHEIGDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|416167558|ref|ZP_11607656.1| S1 RNA binding domain protein [Neisseria meningitidis OX99.30304]
gi|416186031|ref|ZP_11613480.1| S1 RNA binding domain protein [Neisseria meningitidis M0579]
gi|421543478|ref|ZP_15989570.1| yhgF like protein [Neisseria meningitidis NM140]
gi|421545539|ref|ZP_15991599.1| yhgF like protein [Neisseria meningitidis NM183]
gi|421547596|ref|ZP_15993628.1| yhgF like protein [Neisseria meningitidis NM2781]
gi|421551816|ref|ZP_15997799.1| yhgF like protein [Neisseria meningitidis NM576]
gi|433493662|ref|ZP_20450738.1| S1 RNA binding domain protein [Neisseria meningitidis NM762]
gi|325131120|gb|EGC53841.1| S1 RNA binding domain protein [Neisseria meningitidis OX99.30304]
gi|325137143|gb|EGC59738.1| S1 RNA binding domain protein [Neisseria meningitidis M0579]
gi|402325767|gb|EJU61174.1| yhgF like protein [Neisseria meningitidis NM183]
gi|402326589|gb|EJU61989.1| yhgF like protein [Neisseria meningitidis NM140]
gi|402327616|gb|EJU63003.1| yhgF like protein [Neisseria meningitidis NM2781]
gi|402333156|gb|EJU68468.1| yhgF like protein [Neisseria meningitidis NM576]
gi|432231840|gb|ELK87495.1| S1 RNA binding domain protein [Neisseria meningitidis NM762]
Length = 757
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGAFQTASFAEGIHEIGDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|444305152|ref|ZP_21140938.1| competence protein ComEA-like protein with helix-hairpin-helix
repeat region [Arthrobacter sp. SJCon]
gi|443482524|gb|ELT45433.1| competence protein ComEA-like protein with helix-hairpin-helix
repeat region [Arthrobacter sp. SJCon]
Length = 818
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAFVDIG DG V +
Sbjct: 639 PGRDPRPAFAAATFSEGIEKISDLKPGMVLEGTVTNVAAF-GAFVDIGVHQDGLVHVSAL 697
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + DP R R + +R
Sbjct: 698 ANRFVSDPREVVKSGQVVRVKVL-EADPERKRISLTLRL 735
>gi|229845697|ref|ZP_04465820.1| DNA gyrase subunit B [Haemophilus influenzae 6P18H1]
gi|229811383|gb|EEP47089.1| DNA gyrase subunit B [Haemophilus influenzae 6P18H1]
Length = 770
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG+ E+ PG I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGNIVKVKVL-EVDVSRKRIALTMRL 721
>gi|422110734|ref|ZP_16380648.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378562|emb|CBX22834.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 757
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGAFQTASFAEGIHEIGDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>gi|325962327|ref|YP_004240233.1| competence protein ComEA-like protein with helix-hairpin-helix
repeat region [Arthrobacter phenanthrenivorans Sphe3]
gi|323468414|gb|ADX72099.1| competence protein ComEA-like protein with helix-hairpin-helix
repeat region [Arthrobacter phenanthrenivorans Sphe3]
Length = 805
Score = 49.3 bits (116), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAFVD+G DG V +
Sbjct: 637 PGRDPRPAFAAATFSEGIEKISDLKPGMVLEGTVTNVAAF-GAFVDVGVHQDGLVHVSAM 695
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + DP R R + +R
Sbjct: 696 SNRFVSDPREVVKSGQVVRVKVL-EADPDRKRISLTLRL 733
>gi|413962520|ref|ZP_11401747.1| S1 RNA-binding domain-containing protein [Burkholderia sp. SJ98]
gi|413928352|gb|EKS67640.1| S1 RNA-binding domain-containing protein [Burkholderia sp. SJ98]
Length = 778
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ ++ PG I EG VT V + GAFVDIG DG V +
Sbjct: 630 PGRDPRPEFKTATFKEGIEKISDLVPGMILEGVVTNVAAF-GAFVDIGVHQDGLVHVSAM 688
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I+ +K G V V++L + D R R + MR
Sbjct: 689 STKFIKDPHEVVKAGQVVKVKVL-EVDVKRQRIALTMRL 726
>gi|377820976|ref|YP_004977347.1| S1 RNA-binding domain-containing protein [Burkholderia sp. YI23]
gi|357935811|gb|AET89370.1| S1 RNA-binding domain-containing protein [Burkholderia sp. YI23]
Length = 775
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ ++ PG I EG VT V + GAFVDIG DG V +
Sbjct: 630 PGRDPRPEFKTATFKEGIEKISDLVPGMILEGVVTNVAAF-GAFVDIGVHQDGLVHVSAL 688
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I+ +K G V V++L + D R R + MR
Sbjct: 689 STKFIKDPHEVVKAGQVVKVKVL-ETDVKRQRISLTMRL 726
>gi|365920035|ref|ZP_09444389.1| Tex-like protein [Cardiobacterium valvarum F0432]
gi|364578546|gb|EHM55746.1| Tex-like protein [Cardiobacterium valvarum F0432]
Length = 749
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 613 PGRDPRGTFQTATFAEGVHEISDLSSGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 671
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 672 ANRYVADPREIVKAGDVVKVKVL-EVDAERKRIALTMRL 709
>gi|2330910|gb|AAC45837.1| similar to Bordetella pertussis toxin accessory protein encoded by
GenBank Accession Number X95386 [Neisseria gonorrhoeae]
Length = 265
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 122 PGRDPRGAFQTASFAEGIHEISDLQVGMILEGLVSNVANF-GAFVDIGVHQDGLVHISAL 180
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 181 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 218
>gi|157676004|emb|CAP07843.1| putative transcriptional accessory protein [Neisseria canis]
Length = 762
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG+ E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 618 PGRDPRGEFQTATFAEGINEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 676
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 677 SNRFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 714
>gi|269214248|ref|ZP_06158449.1| protein YhgF [Neisseria lactamica ATCC 23970]
gi|269210237|gb|EEZ76692.1| protein YhgF [Neisseria lactamica ATCC 23970]
Length = 283
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 140 PGRDPRGAFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 198
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 199 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 236
>gi|342903298|ref|ZP_08725109.1| putative ribosomal protein S1, RNA-binding domain-containing
protein [Haemophilus haemolyticus M21621]
gi|341955402|gb|EGT81858.1| putative ribosomal protein S1, RNA-binding domain-containing
protein [Haemophilus haemolyticus M21621]
Length = 770
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ + EG+ E+ PG I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+D + H +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGDIVKVKVL-EVDVTRKRIALTMRL 721
>gi|417957233|ref|ZP_12600158.1| protein YhgF [Neisseria weaveri ATCC 51223]
gi|157676006|emb|CAP07844.1| putative transcriptional accessory protein [Neisseria weaveri ATCC
51223]
gi|343968637|gb|EGV36862.1| protein YhgF [Neisseria weaveri ATCC 51223]
Length = 770
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG+ E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 626 PGRDPRGEFQTATFAEGINEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 684
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 685 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 722
>gi|83649058|ref|YP_437493.1| transcriptional accessory protein [Hahella chejuensis KCTC 2396]
gi|83637101|gb|ABC33068.1| Transcriptional accessory protein [Hahella chejuensis KCTC 2396]
Length = 775
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 62/137 (45%), Gaps = 23/137 (16%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + Y+EG+ ++ PG + EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRPEFKFAQYQEGVEDIKDLKPGMVLEGAVTNVTNF-GAFVDIGVHQDGLVHISAL 683
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF---VQPNIDHLIFNRFDFAPI 362
++ R +K G V V+++ + D R R + MR VQ A
Sbjct: 684 SHKFVKDPREVVKAGDIVKVKVI-EVDAARKRIALTMRLDDEVQSG-----------ASA 731
Query: 363 FHRDEDKNPDELRRDCG 379
RD + P + +R+ G
Sbjct: 732 GARDAGRQPQKQKRNAG 748
>gi|145633476|ref|ZP_01789205.1| transcription elongation factor GreB [Haemophilus influenzae 3655]
gi|144985845|gb|EDJ92453.1| transcription elongation factor GreB [Haemophilus influenzae 3655]
Length = 770
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG+ E+ PG I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGNIVKVKVL-EVDVPRKRIALTMRL 721
>gi|394990651|ref|ZP_10383482.1| hypothetical protein SCD_03079 [Sulfuricella denitrificans skB26]
gi|393790133|dbj|GAB73121.1| hypothetical protein SCD_03079 [Sulfuricella denitrificans skB26]
Length = 768
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 258 RGKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIR--H 315
R + +G+ EL PG I EG VT V + GAFVDIG DG V I +++ H
Sbjct: 638 RTAAFRDGVEELKDLQPGMILEGVVTNVANF-GAFVDIGVHQDGLVHISALAEKFVKDPH 696
Query: 316 HIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
I V+ + + DP R R + MR
Sbjct: 697 TIVKAGDVVRVKVVEIDPVRRRIALTMRL 725
>gi|349575902|ref|ZP_08887805.1| YhgF like protein [Neisseria shayeganii 871]
gi|348012511|gb|EGY51455.1| YhgF like protein [Neisseria shayeganii 871]
Length = 764
Score = 48.5 bits (114), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG+ E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 618 PGRDPRGEFQTATFAEGINEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 676
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 677 SNRFVHDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 714
>gi|225077089|ref|ZP_03720288.1| hypothetical protein NEIFLAOT_02142 [Neisseria flavescens
NRL30031/H210]
gi|224951646|gb|EEG32855.1| hypothetical protein NEIFLAOT_02142 [Neisseria flavescens
NRL30031/H210]
Length = 761
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG+ E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 618 PGRDPRGEFQTASFAEGIREISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 676
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 677 SDKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 714
>gi|345874126|ref|ZP_08825942.1| S1 RNA binding domain protein [Neisseria weaveri LMG 5135]
gi|343970771|gb|EGV38942.1| S1 RNA binding domain protein [Neisseria weaveri LMG 5135]
Length = 732
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG+ E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 588 PGRDPRGEFQTATFAEGINEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 646
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 647 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 684
>gi|312796107|ref|YP_004029029.1| transcription accessory protein (S1 RNA binding domain)
[Burkholderia rhizoxinica HKI 454]
gi|312167882|emb|CBW74885.1| Transcription accessory protein (S1 RNA binding domain)
[Burkholderia rhizoxinica HKI 454]
Length = 801
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ L PG I EG VT V + GAF+DIG DG V +
Sbjct: 653 PGRDPRPEFKTATFREGVETLADLSPGMILEGVVTNVAAF-GAFIDIGVHQDGLVHVSAM 711
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V++L + D R R + MR
Sbjct: 712 STKFVKDPHEVVKAGQVVTVKVL-EVDLKRQRISLTMRL 749
>gi|424776874|ref|ZP_18203849.1| transcription accessory protein [Alcaligenes sp. HPC1271]
gi|422887914|gb|EKU30308.1| transcription accessory protein [Alcaligenes sp. HPC1271]
Length = 782
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ L PG I EG VT V + GAFVD+G DG V I
Sbjct: 639 PGRDPRPEFTTAKFQEGINSLNDLTPGMILEGVVTNVANF-GAFVDVGVHQDGLVHISAL 697
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R ++VG V V++ + D R R + MR
Sbjct: 698 SETFVKDPRDVVRVGQTVKVKV-QEVDVARKRIGLTMRL 735
>gi|412989016|emb|CCO15607.1| predicted protein [Bathycoccus prasinos]
Length = 831
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPY 334
G+ + KV ++ LY GA VD G DG +PI D R + VG + V++ +
Sbjct: 491 GETLKAKVKSLDLYHGALVDCGTEIDGLIPIAEADIPRARVFLAVGSELEVKVSRVHAKF 550
Query: 335 -RFRFPIEMRFVQPNI 349
R RFP+E+ V+ I
Sbjct: 551 WRIRFPLEVMPVEQKI 566
>gi|419838711|ref|ZP_14362131.1| Tex-like protein N-terminal domain protein [Haemophilus
haemolyticus HK386]
gi|386909939|gb|EIJ74601.1| Tex-like protein N-terminal domain protein [Haemophilus
haemolyticus HK386]
Length = 770
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG+ E+ PG I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGDIVKVKVL-EVDVPRKRIALTMRL 721
>gi|417840581|ref|ZP_12486707.1| putative tex-like protein [Haemophilus haemolyticus M19107]
gi|341947589|gb|EGT74235.1| putative tex-like protein [Haemophilus haemolyticus M19107]
Length = 770
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ + EG+ E+ PG I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+D + H +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGDIVKVKVL-EVDVPRKRIALTMRL 721
>gi|373466328|ref|ZP_09557646.1| Tex-like protein [Haemophilus sp. oral taxon 851 str. F0397]
gi|371760694|gb|EHO49367.1| Tex-like protein [Haemophilus sp. oral taxon 851 str. F0397]
Length = 772
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ + EG+ E+ PG I EG VT V + GAFVDIG DG V I
Sbjct: 627 PGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 685
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+D + H +K G V V++L + D R R + MR
Sbjct: 686 SDKFVEDPHQVVKTGDIVKVKVL-EVDVPRKRIALTMRL 723
>gi|350572529|ref|ZP_08940826.1| YhgF like protein [Neisseria wadsworthii 9715]
gi|349789966|gb|EGZ43895.1| YhgF like protein [Neisseria wadsworthii 9715]
Length = 782
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG+ E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 638 PGRDPRGEFQTATFAEGINEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 696
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 697 SNKFVQDPREVVKAGDVVKVKVL-EVDAERKRIALTMRL 734
>gi|417841001|ref|ZP_12487108.1| putative ribosomal protein S1, RNA-binding domain-containing
protein [Haemophilus haemolyticus M19501]
gi|341950096|gb|EGT76689.1| putative ribosomal protein S1, RNA-binding domain-containing
protein [Haemophilus haemolyticus M19501]
Length = 770
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG+ E+ PG I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGDIVKVKVL-EVDVPRKRIALTMRL 721
>gi|220911765|ref|YP_002487074.1| RNA binding S1 domain-containing protein [Arthrobacter
chlorophenolicus A6]
gi|219858643|gb|ACL38985.1| RNA binding S1 domain protein [Arthrobacter chlorophenolicus A6]
Length = 830
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAFVD+G DG V +
Sbjct: 637 PGRDPRPAFTTAAFSEGIEKISDLKPGMVLEGTVTNVAAF-GAFVDVGVHQDGLVHVSAL 695
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + DP R R + +R
Sbjct: 696 ANRFVSDPREVVKSGQVVRVKVL-EADPERKRISLTLRL 733
>gi|419801486|ref|ZP_14326713.1| protein YhgF [Haemophilus parainfluenzae HK262]
gi|419846293|ref|ZP_14369546.1| protein YhgF [Haemophilus parainfluenzae HK2019]
gi|385193700|gb|EIF41057.1| protein YhgF [Haemophilus parainfluenzae HK262]
gi|386414033|gb|EIJ28602.1| protein YhgF [Haemophilus parainfluenzae HK2019]
Length = 770
Score = 47.8 bits (112), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ + EG+ E+ PG I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+D + H +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGDIVKVKVL-EVDVPRKRIALTMRL 721
>gi|417844737|ref|ZP_12490777.1| putative nucleic acid-binding, OB-fold-like protein [Haemophilus
haemolyticus M21639]
gi|341956404|gb|EGT82831.1| putative nucleic acid-binding, OB-fold-like protein [Haemophilus
haemolyticus M21639]
Length = 770
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG+ E+ PG I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGDIVKVKVL-EVDVPRKRIALTMRL 721
>gi|345429359|ref|YP_004822477.1| transcriptional accessory protein [Haemophilus parainfluenzae T3T1]
gi|301155420|emb|CBW14886.1| predicted transcriptional accessory protein [Haemophilus
parainfluenzae T3T1]
Length = 770
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ + EG+ E+ PG I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+D + H +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGDIVKVKVL-EVDVPRKRIALTMRL 721
>gi|148827760|ref|YP_001292513.1| DNA gyrase subunit B [Haemophilus influenzae PittGG]
gi|148719002|gb|ABR00130.1| DNA gyrase subunit B [Haemophilus influenzae PittGG]
Length = 770
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG+ E+ PG I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGDIVKVKVL-EVDVPRKRIALTMRL 721
>gi|325576610|ref|ZP_08147328.1| YhgF like protein [Haemophilus parainfluenzae ATCC 33392]
gi|325161173|gb|EGC73288.1| YhgF like protein [Haemophilus parainfluenzae ATCC 33392]
Length = 772
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ + EG+ E+ PG I EG VT V + GAFVDIG DG V I
Sbjct: 627 PGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 685
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+D + H +K G V V++L + D R R + MR
Sbjct: 686 SDKFVEDPHQVVKTGDIVKVKVL-EVDVPRKRIALTMRL 723
>gi|417843837|ref|ZP_12489902.1| putative tex-like protein [Haemophilus haemolyticus M21127]
gi|341948300|gb|EGT74930.1| putative tex-like protein [Haemophilus haemolyticus M21127]
Length = 770
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ + EG+ E+ PG I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTAVFAEGVEEITDLKPGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+D + H +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGDIVKVKVL-EVDVPRKRIALTMRL 721
>gi|291614014|ref|YP_003524171.1| hypothetical protein Slit_1548 [Sideroxydans lithotrophicus ES-1]
gi|291584126|gb|ADE11784.1| Tex-like protein protein-like protein [Sideroxydans lithotrophicus
ES-1]
Length = 786
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ EL PG I EG VT V + GAFVDIG DG V I
Sbjct: 638 PGRDPRPEFTTASFREGVEELKDLEPGMILEGVVTNVAAF-GAFVDIGVHQDGLVHISAL 696
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRFV 345
+++ +K G V V++L + D R R + MR
Sbjct: 697 ADKFVKDPHSVVKAGQIVKVKVL-EVDVKRKRVSLTMRLT 735
>gi|399909331|ref|ZP_10777883.1| ribonuclease RNAse H [Halomonas sp. KM-1]
Length = 784
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++ EG+ L PG I EG VT V + GAFVDIG DG V I
Sbjct: 631 PGRDPRPEFKAAEFREGVETLKDLEPGMILEGSVTNVTHF-GAFVDIGVHQDGLVHISAL 689
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++++ D R R + MR
Sbjct: 690 SDKFVEDPRSVVKAGDIVKVKVMSV-DLERARIGLSMRL 727
>gi|388259449|ref|ZP_10136622.1| S1 RNA binding domain protein [Cellvibrio sp. BR]
gi|387936887|gb|EIK43445.1| S1 RNA binding domain protein [Cellvibrio sp. BR]
Length = 776
Score = 47.8 bits (112), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ E+ PG I EG VT V + GAFVDIG DG V I
Sbjct: 630 PGRDPRPEFKTAQFQEGVEEITDLVPGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISAL 688
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V +++ + D R R + +R
Sbjct: 689 SHNFIKDPREAVKAGDIVKAKVM-EVDVPRKRIALSLRL 726
>gi|71737579|ref|YP_272550.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71558132|gb|AAZ37343.1| S1 RNA binding domain protein [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 773
Score = 47.8 bits (112), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++++G+ EL PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQDGVEELKDLQPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|315634955|ref|ZP_07890236.1| YhgF like protein [Aggregatibacter segnis ATCC 33393]
gi|315476217|gb|EFU66968.1| YhgF like protein [Aggregatibacter segnis ATCC 33393]
Length = 771
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ + EG+ E+ G I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTATFAEGVEEITDLKAGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+D + H +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGDVVKVKVL-EVDVARRRIALTMRL 721
>gi|298160206|gb|EFI01234.1| transcriptional accessory factor [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 773
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++++G+ EL PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQDGVEELKDLQPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|416891392|ref|ZP_11922975.1| DNA gyrase subunit B [Aggregatibacter aphrophilus ATCC 33389]
gi|347815460|gb|EGY32099.1| DNA gyrase subunit B [Aggregatibacter aphrophilus ATCC 33389]
Length = 771
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG+ E+ G I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTATFAEGVEEITDLKAGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGDVVKVKVL-EVDVARRRIALTMRL 721
>gi|422596526|ref|ZP_16670807.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|330986824|gb|EGH84927.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 773
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++++G+ EL PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQDGVEELKDLQPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|289646444|ref|ZP_06477787.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
aesculi str. 2250]
Length = 773
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++++G+ EL PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQDGVEELKDLQPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|257481800|ref|ZP_05635841.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
tabaci str. ATCC 11528]
gi|416019395|ref|ZP_11566288.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
glycinea str. B076]
gi|416022246|ref|ZP_11567486.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
glycinea str. race 4]
gi|422403161|ref|ZP_16480220.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
glycinea str. race 4]
gi|422680088|ref|ZP_16738360.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
tabaci str. ATCC 11528]
gi|320322223|gb|EFW78319.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
glycinea str. B076]
gi|320331861|gb|EFW87799.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330873008|gb|EGH07157.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
glycinea str. race 4]
gi|331009434|gb|EGH89490.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
tabaci str. ATCC 11528]
Length = 773
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++++G+ EL PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQDGVEELKDLQPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|251793287|ref|YP_003008015.1| protein YhgF [Aggregatibacter aphrophilus NJ8700]
gi|422337556|ref|ZP_16418527.1| hypothetical protein HMPREF9335_01715 [Aggregatibacter aphrophilus
F0387]
gi|247534682|gb|ACS97928.1| protein YhgF [Aggregatibacter aphrophilus NJ8700]
gi|353345268|gb|EHB89564.1| hypothetical protein HMPREF9335_01715 [Aggregatibacter aphrophilus
F0387]
Length = 771
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ + EG+ E+ G I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTATFAEGVEEITDLKAGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+D + H +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGDVVKVKVL-EVDVARRRIALTMRL 721
>gi|397654307|ref|YP_006494990.1| hypothetical protein CULC0102_1556 [Corynebacterium ulcerans 0102]
gi|393403263|dbj|BAM27755.1| hypothetical protein CULC0102_1556 [Corynebacterium ulcerans 0102]
Length = 767
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR R ++EG+ ++ PG I EG VT V + GAFVD+G DG V +
Sbjct: 613 PGRDPRPEFATATFKEGVEKISDLIPGMILEGTVTNVAAF-GAFVDVGVHQDGLVHVSAL 671
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
D + H ++ G V V+++ + DP R R + M+
Sbjct: 672 ADTFVSNPHDVVRSGQVVKVKVM-EVDPERKRISLSMKL 709
>gi|337291046|ref|YP_004630067.1| hypothetical protein CULC22_01438 [Corynebacterium ulcerans
BR-AD22]
gi|334699352|gb|AEG84148.1| hypothetical protein CULC22_01438 [Corynebacterium ulcerans
BR-AD22]
Length = 767
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR R ++EG+ ++ PG I EG VT V + GAFVD+G DG V +
Sbjct: 613 PGRDPRPEFATATFKEGVEKISDLIPGMILEGTVTNVAAF-GAFVDVGVHQDGLVHVSAL 671
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
D + H ++ G V V+++ + DP R R + M+
Sbjct: 672 ADTFVSNPHDVVRSGQVVKVKVM-EVDPERKRISLSMKL 709
>gi|384515958|ref|YP_005711050.1| hypothetical protein CULC809_01424 [Corynebacterium ulcerans 809]
gi|334697159|gb|AEG81956.1| hypothetical protein CULC809_01424 [Corynebacterium ulcerans 809]
Length = 767
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR R ++EG+ ++ PG I EG VT V + GAFVD+G DG V +
Sbjct: 613 PGRDPRPEFATATFKEGVEKISDLIPGMILEGTVTNVAAF-GAFVDVGVHQDGLVHVSAL 671
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
D + H ++ G V V+++ + DP R R + M+
Sbjct: 672 ADTFVSNPHDVVRSGQVVKVKVM-EVDPERKRISLSMKL 709
>gi|238027085|ref|YP_002911316.1| RNA binding S1 [Burkholderia glumae BGR1]
gi|237876279|gb|ACR28612.1| RNA binding S1 [Burkholderia glumae BGR1]
Length = 776
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAFVDIG DG V +
Sbjct: 630 PGRDPRPEFKTATFREGVEKVSDLLPGMVLEGVVTNVAAF-GAFVDIGVHQDGLVHVSAM 688
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I+ +K G V V++L + D R R + MR
Sbjct: 689 STKFIKDPHEVVKAGQVVKVKVL-EVDVKRQRIALTMRL 726
>gi|422607328|ref|ZP_16679329.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
mori str. 301020]
gi|330890971|gb|EGH23632.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
mori str. 301020]
Length = 774
Score = 47.4 bits (111), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++++G+ EL PG I EG VT V + GAFVDIG DG V I
Sbjct: 624 PGRDPRPEFKTAEFQDGVEELKDLQPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 682
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 683 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 720
>gi|28867558|ref|NP_790177.1| S1 RNA binding domain-containing protein [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213971032|ref|ZP_03399153.1| S1 RNA binding domain protein [Pseudomonas syringae pv. tomato T1]
gi|301385595|ref|ZP_07234013.1| S1 RNA binding domain protein [Pseudomonas syringae pv. tomato
Max13]
gi|302058821|ref|ZP_07250362.1| S1 RNA binding domain protein [Pseudomonas syringae pv. tomato K40]
gi|302132150|ref|ZP_07258140.1| S1 RNA binding domain protein [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|422656360|ref|ZP_16718806.1| S1 RNA binding domain protein [Pseudomonas syringae pv. lachrymans
str. M302278]
gi|28850793|gb|AAO53872.1| S1 RNA binding domain protein [Pseudomonas syringae pv. tomato str.
DC3000]
gi|213924268|gb|EEB57842.1| S1 RNA binding domain protein [Pseudomonas syringae pv. tomato T1]
gi|331014861|gb|EGH94917.1| S1 RNA binding domain protein [Pseudomonas syringae pv. lachrymans
str. M302278]
Length = 773
Score = 47.4 bits (111), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++EG+ +L PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQEGVEDLKDLQPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EIDIPRKRVGLSMRM 719
>gi|34496992|ref|NP_901207.1| transcriptional accessory protein [Chromobacterium violaceum ATCC
12472]
gi|34102848|gb|AAQ59212.1| probable transcriptional accessory protein [Chromobacterium
violaceum ATCC 12472]
Length = 770
Score = 47.4 bits (111), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ ++ PG + EG VT V + GAFVDIG DG V I
Sbjct: 626 PGRDPRPEFKTATFQDGVEDIKHLQPGMVLEGVVTNVANF-GAFVDIGVHQDGLVHISAL 684
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V++L + D R R + MR
Sbjct: 685 SNKFIDDPRKVVKAGDVVKVKVL-EVDVARKRIALTMRL 722
>gi|429333097|ref|ZP_19213803.1| RNA-binding S1 domain-containing protein [Pseudomonas putida CSV86]
gi|428762198|gb|EKX84406.1| RNA-binding S1 domain-containing protein [Pseudomonas putida CSV86]
Length = 772
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++EG+ +L PG + EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQEGVEDLKDLVPGMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|393759266|ref|ZP_10348082.1| transcription accessory protein [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393162494|gb|EJC62552.1| transcription accessory protein [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 782
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 57/136 (41%), Gaps = 20/136 (14%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ L PG I EG VT V + GAFVD+G DG V I
Sbjct: 639 PGRDPRPEFTTAKFQEGINSLNDLTPGLILEGVVTNVANF-GAFVDVGVHQDGLVHISAL 697
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPNIDHLIFNRFDFAPIFHR 365
++ R ++VG V V++ + D R R + MR D AP+
Sbjct: 698 SDTFVKDPRDVVRVGQTVKVKV-QEVDVARKRIGLTMRLND-----------DSAPVRGS 745
Query: 366 DEDKNPDELRRDCGRP 381
N + R RP
Sbjct: 746 SSTSNAPQRRSGNNRP 761
>gi|54307403|ref|YP_128423.1| hypothetical protein PBPRA0182 [Photobacterium profundum SS9]
gi|46911823|emb|CAG18621.1| conserved hypothetical protein [Photobacterium profundum SS9]
Length = 792
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ E+ PG I EG +T V + GAFVD+G DG V I
Sbjct: 633 PGRDPRPEFKTATFAEGVNEVKDLIPGMILEGVITNVTNF-GAFVDVGVHQDGLVHISAL 691
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 692 SDKFISDPREVVKAGDVVKVKVM-EVDLQRKRIAMSMRM 729
>gi|186476164|ref|YP_001857634.1| RNA-binding S1 domain-containing protein [Burkholderia phymatum
STM815]
gi|184192623|gb|ACC70588.1| RNA binding S1 domain protein [Burkholderia phymatum STM815]
Length = 780
Score = 47.0 bits (110), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAF+DIG DG V +
Sbjct: 630 PGRDPRPEFKTATFREGVEKISDLSPGMVLEGVVTNVAAF-GAFIDIGVHQDGLVHVSAM 688
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I+ +K G V V++L + D R R + MR
Sbjct: 689 STKFIKDPHEVVKAGQIVKVKVL-EVDVKRQRISLTMRM 726
>gi|145638523|ref|ZP_01794132.1| transcription elongation factor GreB [Haemophilus influenzae
PittII]
gi|145272118|gb|EDK12026.1| transcription elongation factor GreB [Haemophilus influenzae
PittII]
gi|309750027|gb|ADO80011.1| Probable transcription accessory protein Tex [Haemophilus
influenzae R2866]
Length = 770
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG+ E+ G I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTAVFAEGVEEITDLKSGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGNIVKVKVL-EVDVLRKRIALTMRL 721
>gi|241166280|ref|XP_002409833.1| protein tex, putative [Ixodes scapularis]
gi|215494654|gb|EEC04295.1| protein tex, putative [Ixodes scapularis]
Length = 616
Score = 47.0 bits (110), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ L PG I EG VT V + GAFVD+G DG V I
Sbjct: 366 PGRDPRPEFTTAKFQEGINSLNDLTPGMILEGVVTNVANF-GAFVDVGVHQDGLVHISAL 424
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R ++VG V V++ + D R R + MR
Sbjct: 425 SETFVKDPRDVVRVGQTVKVKV-QEVDVARKRIGLTMRL 462
>gi|187924504|ref|YP_001896146.1| RNA binding S1 domain-containing protein [Burkholderia phytofirmans
PsJN]
gi|187715698|gb|ACD16922.1| RNA binding S1 domain protein [Burkholderia phytofirmans PsJN]
Length = 782
Score = 47.0 bits (110), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAF+DIG DG V +
Sbjct: 630 PGRDPRPEFKTATFREGVEKVSDLTPGMVLEGVVTNVAAF-GAFIDIGVHQDGLVHVSAM 688
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I+ +K G V V++L + D R R + MR
Sbjct: 689 STKFIKDPHEVVKAGQIVKVKVL-EVDVKRQRIALTMRM 726
>gi|90412697|ref|ZP_01220698.1| hypothetical protein P3TCK_22355 [Photobacterium profundum 3TCK]
gi|90326272|gb|EAS42691.1| hypothetical protein P3TCK_22355 [Photobacterium profundum 3TCK]
Length = 784
Score = 47.0 bits (110), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ E+ PG I EG +T V + GAFVD+G DG V I
Sbjct: 625 PGRDPRPEFKTATFAEGVNEVKDLIPGMILEGVITNVTNF-GAFVDVGVHQDGLVHISAL 683
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 684 SDKFISDPREVVKAGDVVKVKVM-EVDLQRKRIAMSMRM 721
>gi|68249168|ref|YP_248280.1| transcriptional accessory protein [Haemophilus influenzae 86-028NP]
gi|68057367|gb|AAX87620.1| predicted transcriptional accessory protein [Haemophilus influenzae
86-028NP]
Length = 770
Score = 47.0 bits (110), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG+ E+ G I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTAVFAEGVEEITDLKSGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPLQVVKTGNIVKVKVL-EVDVLRKRIALTMRL 721
>gi|91784192|ref|YP_559398.1| S1 RNA-binding domain-containing protein [Burkholderia xenovorans
LB400]
gi|91688146|gb|ABE31346.1| S1 RNA binding domain protein [Burkholderia xenovorans LB400]
Length = 781
Score = 47.0 bits (110), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAF+DIG DG V +
Sbjct: 630 PGRDPRPEFKTATFREGVEKVSDLTPGMVLEGVVTNVAAF-GAFIDIGVHQDGLVHVSAM 688
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I+ +K G V V++L + D R R + MR
Sbjct: 689 STKFIKDPHEVVKAGQIVKVKVL-EVDVKRQRIALTMRM 726
>gi|73541033|ref|YP_295553.1| RNA binding S1 [Ralstonia eutropha JMP134]
gi|72118446|gb|AAZ60709.1| RNA binding S1 [Ralstonia eutropha JMP134]
Length = 802
Score = 47.0 bits (110), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ ++ PG I EG VT V + GAFVDIG DG V I
Sbjct: 655 PGRDPRPEFKTATFQEGVEDVKDLQPGMILEGVVTNVAAF-GAFVDIGVHQDGLVHISAL 713
Query: 309 DWYWIRHH---IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 714 SNKFVKDAHEVVKAGQIVKVKVM-EVDVMRNRIGLSMRL 751
>gi|390568837|ref|ZP_10249129.1| RNA-binding S1 domain-containing protein [Burkholderia terrae
BS001]
gi|420256804|ref|ZP_14759624.1| transcriptional accessory protein [Burkholderia sp. BT03]
gi|389939186|gb|EIN01023.1| RNA-binding S1 domain-containing protein [Burkholderia terrae
BS001]
gi|398042518|gb|EJL35523.1| transcriptional accessory protein [Burkholderia sp. BT03]
Length = 778
Score = 47.0 bits (110), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAF+DIG DG V +
Sbjct: 630 PGRDPRPEFKTATFREGVEKISDLAPGMVLEGVVTNVAAF-GAFIDIGVHQDGLVHVSAM 688
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I+ +K G V V++L + D R R + MR
Sbjct: 689 STKFIKDPHEVVKAGQIVKVKVL-EVDVKRQRISLTMRM 726
>gi|387812820|ref|YP_005428297.1| S1 RNA binding domain-containing protein [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381337827|emb|CCG93874.1| putataive S1 RNA binding domain protein [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 774
Score = 46.6 bits (109), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 58/125 (46%), Gaps = 19/125 (15%)
Query: 262 YEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWI---RHHIK 318
+EEG+ L PG + EG VT V + GAFVDIG DG V I ++ R +K
Sbjct: 638 FEEGVETLNDLKPGMVLEGSVTNVTNF-GAFVDIGVHQDGLVHISALSHTFVKDPREVVK 696
Query: 319 VGMHVIVEILAKRDPYRFRFPIEMRF-VQPNIDHLIFNRFDFAPIFHRDEDKNPDELRRD 377
G V V+++ + D R R + MR QP D+ P+ R D+N R
Sbjct: 697 AGDIVKVKVM-EVDIPRKRIGLSMRMDDQPGADN--------KPV--RGADRNSG---RS 742
Query: 378 CGRPP 382
GR P
Sbjct: 743 AGRKP 747
>gi|350543792|ref|ZP_08913481.1| Transcription accessory protein (S1 RNA-binding domain) [Candidatus
Burkholderia kirkii UZHbot1]
gi|350528412|emb|CCD35678.1| Transcription accessory protein (S1 RNA-binding domain) [Candidatus
Burkholderia kirkii UZHbot1]
Length = 770
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ + PG I EG V V + GAFVDIG DG V +
Sbjct: 630 PGRDPRPEFKTATFKEGIERISDLVPGMILEGVVANVAAF-GAFVDIGVHQDGLVHVSAM 688
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V++L + D R R + MR
Sbjct: 689 STKFVKDPHEVVKAGQVVKVKVL-ETDVKRQRISLTMRL 726
>gi|30250132|ref|NP_842202.1| S1 RNA-binding domain-containing protein [Nitrosomonas europaea
ATCC 19718]
gi|30139239|emb|CAD86109.1| S1 RNA binding domain [Nitrosomonas europaea ATCC 19718]
Length = 801
Score = 46.6 bits (109), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ + PG I EG VT V + GAF+DIG DG V +
Sbjct: 650 PGRDPRPEFKTAVFQEGIESITDLQPGMILEGVVTNVAAF-GAFIDIGVHQDGLVHVSAL 708
Query: 309 DWYWIR--HHI-KVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I+ H I K G V V +L D R R + MR
Sbjct: 709 ANKFIKDPHQIVKPGQVVKVRVLTV-DAVRQRISLTMRI 746
>gi|415946702|ref|ZP_11556492.1| Transcriptional accessory protein [Herbaspirillum frisingense
GSF30]
gi|407758196|gb|EKF68060.1| Transcriptional accessory protein [Herbaspirillum frisingense
GSF30]
Length = 783
Score = 46.6 bits (109), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ E+ P I EG VT V + GAFVDIG DG V I
Sbjct: 637 PGRDPRPEFTTATFKEGVEEIKDLRPDMILEGVVTNVAAF-GAFVDIGVHQDGLVHISAL 695
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V++L + D R R + MR
Sbjct: 696 SNTYVKDPHTVVKAGQVVKVKVL-EVDEKRKRIALTMRL 733
>gi|385329957|ref|YP_005883908.1| transcriptional accessory protein [Marinobacter adhaerens HP15]
gi|311693107|gb|ADP95980.1| transcriptional accessory protein [Marinobacter adhaerens HP15]
Length = 779
Score = 46.6 bits (109), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + +EEG+ L PG + EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRPEFRFASFEEGVETLSDLKPGMVLEGSVTNVTNF-GAFVDIGVHQDGLVHISAL 683
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V+++ P R R + MR
Sbjct: 684 SHTFVKDPREVVKAGDIVKVKVMDVDIP-RKRIALTMRM 721
>gi|92114773|ref|YP_574701.1| RNA binding S1 [Chromohalobacter salexigens DSM 3043]
gi|91797863|gb|ABE60002.1| RNA binding S1 [Chromohalobacter salexigens DSM 3043]
Length = 804
Score = 46.6 bits (109), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 258 RGKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWI---R 314
R + +G+ L PG + EG VT V + GAFVDIG DG V I +I R
Sbjct: 664 RAAQFRDGVETLKDLEPGMVLEGSVTNVTHF-GAFVDIGVHQDGLVHISALSETFIEDPR 722
Query: 315 HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+K G V V+++ + D R R + MR
Sbjct: 723 QVVKAGDIVKVKVM-EVDLERARIGLSMRM 751
>gi|385209032|ref|ZP_10035900.1| transcriptional accessory protein [Burkholderia sp. Ch1-1]
gi|385181370|gb|EIF30646.1| transcriptional accessory protein [Burkholderia sp. Ch1-1]
Length = 829
Score = 46.6 bits (109), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAF+DIG DG V +
Sbjct: 677 PGRDPRPEFKTATFREGVEKVSDLTPGMVLEGVVTNVAAF-GAFIDIGVHQDGLVHVSAM 735
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I+ +K G V V++L + D R R + MR
Sbjct: 736 STKFIKDPHEVVKAGQIVKVKVL-EVDVKRQRIALTMRM 773
>gi|358448039|ref|ZP_09158546.1| RNA-binding S1 domain-containing protein [Marinobacter
manganoxydans MnI7-9]
gi|357227724|gb|EHJ06182.1| RNA-binding S1 domain-containing protein [Marinobacter
manganoxydans MnI7-9]
Length = 779
Score = 46.6 bits (109), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + +EEG+ L PG + EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRPEFRFASFEEGVETLSDLKPGMVLEGSVTNVTNF-GAFVDIGVHQDGLVHISAL 683
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V+++ P R R + MR
Sbjct: 684 SHTFVKDPREVVKAGDIVKVKVMDVDIP-RKRIALTMRM 721
>gi|389783180|ref|ZP_10194674.1| transcriptional accessory protein [Rhodanobacter spathiphylli B39]
gi|388435118|gb|EIL92036.1| transcriptional accessory protein [Rhodanobacter spathiphylli B39]
Length = 777
Score = 46.6 bits (109), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG I EG+VT V + GAFVDIG DG V +
Sbjct: 627 PGRDPRPEFVAPSFAEGVEDVKDLRPGMILEGRVTNVAAF-GAFVDIGVHQDGLVHVSAL 685
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V+++ + D R R + MR
Sbjct: 686 SHTFVKDPRDAVKAGDIVKVKVM-EVDLPRQRIGLSMRL 723
>gi|307544277|ref|YP_003896756.1| ribonuclease RNAse H [Halomonas elongata DSM 2581]
gi|307216301|emb|CBV41571.1| K06959 [Halomonas elongata DSM 2581]
Length = 784
Score = 46.6 bits (109), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 258 RGKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWI---R 314
R ++ EG+ L PG + EG VT V + GAFVDIG DG V I ++ R
Sbjct: 640 RAAEFREGVETLKDLEPGMVLEGSVTNVTHF-GAFVDIGVHQDGLVHISALSNKFVEDPR 698
Query: 315 HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+K G V V+++ D R R + MR
Sbjct: 699 SVVKAGDIVKVKVM-NVDLERSRIGLSMRL 727
>gi|300313473|ref|YP_003777565.1| transcription accessory protein [Herbaspirillum seropedicae SmR1]
gi|300076258|gb|ADJ65657.1| transcription accessory protein [Herbaspirillum seropedicae SmR1]
Length = 783
Score = 46.6 bits (109), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ E+ P I EG VT V + GAFVDIG DG V I
Sbjct: 637 PGRDPRPEFTTATFKEGVEEIKDLRPDMILEGVVTNVAAF-GAFVDIGVHQDGLVHISAL 695
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V++L + D R R + MR
Sbjct: 696 SNTYVKDPHTVVKAGQVVKVKVL-EVDEKRKRIALTMRL 733
>gi|387770489|ref|ZP_10126669.1| Tex-like protein N-terminal domain protein [Pasteurella bettyae
CCUG 2042]
gi|386904300|gb|EIJ69096.1| Tex-like protein N-terminal domain protein [Pasteurella bettyae
CCUG 2042]
Length = 778
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + +G+ ++ PG I EG +T V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTATFMDGVEDITDLKPGMILEGTITNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGDVVKVKVL-EVDVARRRIALTMRL 721
>gi|261867409|ref|YP_003255331.1| protein YhgF [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261412741|gb|ACX82112.1| protein YhgF [Aggregatibacter actinomycetemcomitans D11S-1]
Length = 771
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ + +G+ E+ G I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTATFADGVEEITDLKAGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+D + H +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEEPHQVVKTGDIVKVKVL-EVDVARRRIALTMRL 721
>gi|307729263|ref|YP_003906487.1| Tex-like protein [Burkholderia sp. CCGE1003]
gi|307583798|gb|ADN57196.1| Tex-like protein protein-like protein [Burkholderia sp. CCGE1003]
Length = 781
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 258 RGKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIR--- 314
R + EG+ ++ PG + EG VT V + GAF+D+G DG V + +I+
Sbjct: 639 RTATFREGVEKVSDLTPGMVLEGVVTNVAAF-GAFIDVGVHQDGLVHVSAMSTKFIKDPH 697
Query: 315 HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+K G V V++L + D R R + MR
Sbjct: 698 EVVKAGQIVKVKVL-EVDVKRQRIALTMRL 726
>gi|170694794|ref|ZP_02885945.1| RNA binding S1 domain protein [Burkholderia graminis C4D1M]
gi|170140425|gb|EDT08602.1| RNA binding S1 domain protein [Burkholderia graminis C4D1M]
Length = 783
Score = 46.2 bits (108), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAF+D+G DG V +
Sbjct: 630 PGRDPRPEFKTATFREGVEKVSDLTPGMVLEGVVTNVAAF-GAFIDVGVHQDGLVHVSAM 688
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I+ +K G V V++L + D R R + MR
Sbjct: 689 STKFIKDPHEVVKAGQIVKVKVL-EVDVKRQRIALTMRL 726
>gi|389808833|ref|ZP_10204969.1| transcriptional accessory protein [Rhodanobacter thiooxydans LCS2]
gi|388442416|gb|EIL98612.1| transcriptional accessory protein [Rhodanobacter thiooxydans LCS2]
Length = 775
Score = 46.2 bits (108), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG I EG+VT V + GAFVDIG DG V +
Sbjct: 623 PGRDPRPEFVAPSFAEGVEDVKDLKPGMILEGRVTNVAAF-GAFVDIGVHQDGLVHVSAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V+++ + D R R + MR
Sbjct: 682 SHTFVKDPRDAVKAGDIVKVKVM-EVDIPRQRIGLSMRL 719
>gi|378948220|ref|YP_005205708.1| transcription accessory protein (S1 RNA-binding domain)
[Pseudomonas fluorescens F113]
gi|359758234|gb|AEV60313.1| Transcription accessory protein (S1 RNA-binding domain)
[Pseudomonas fluorescens F113]
Length = 774
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++++G+ +L PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQDGVEDLKDLQPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|323526564|ref|YP_004228717.1| Tex-like protein [Burkholderia sp. CCGE1001]
gi|323383566|gb|ADX55657.1| Tex-like protein protein-like protein [Burkholderia sp. CCGE1001]
Length = 780
Score = 46.2 bits (108), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAF+D+G DG V +
Sbjct: 630 PGRDPRPEFKTATFREGVEKVSDLTPGMVLEGVVTNVAAF-GAFIDVGVHQDGLVHVSAM 688
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I+ +K G V V++L + D R R + MR
Sbjct: 689 STKFIKDPHEVVKAGQIVKVKVL-EVDVKRQRIALTMRL 726
>gi|440740037|ref|ZP_20919536.1| S1 RNA binding domain-containing protein [Pseudomonas fluorescens
BRIP34879]
gi|440378363|gb|ELQ14986.1| S1 RNA binding domain-containing protein [Pseudomonas fluorescens
BRIP34879]
Length = 778
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++++G+ +L PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQDGVEDLKDLQPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|389736110|ref|ZP_10189701.1| transcriptional accessory protein [Rhodanobacter sp. 115]
gi|388439845|gb|EIL96305.1| transcriptional accessory protein [Rhodanobacter sp. 115]
Length = 775
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG I EG+VT V + GAFVDIG DG V +
Sbjct: 627 PGRDPRPEFVAPTFAEGVEDVKDLKPGMILEGRVTNVAAF-GAFVDIGVHQDGLVHVSAL 685
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V+++ + D R R + MR
Sbjct: 686 SHTFVKDPRDAVKAGDIVKVKVM-EVDIPRQRIGLSMRL 723
>gi|308047928|ref|YP_003911494.1| Tex-like protein [Ferrimonas balearica DSM 9799]
gi|307630118|gb|ADN74420.1| Tex-like protein [Ferrimonas balearica DSM 9799]
Length = 775
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG+ ++ PG + EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGQFETAAFAEGVEKVSDLEPGMVLEGVVTNVANF-GAFVDIGVHQDGLVHISAL 683
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V+++ + D R R + MR
Sbjct: 684 SNKFVEDPRTVVKAGDVVKVKVM-EVDVPRQRIGLSMRL 721
>gi|289627976|ref|ZP_06460930.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
aesculi str. NCPPB 3681]
gi|422581721|ref|ZP_16656862.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330866569|gb|EGH01278.1| S1 RNA-binding domain-containing protein [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 773
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++ G+ EL PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQVGVEELKDLQPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|386311908|ref|YP_006008073.1| Tex-like protein [Shewanella putrefaciens 200]
gi|319424533|gb|ADV52607.1| Tex-like protein [Shewanella putrefaciens 200]
Length = 813
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ ++EG+ EL P I EG VT V + GAFVDIG DG V I
Sbjct: 658 PGRDPRGEFKTAKFKEGIEELKHLKPEMILEGVVTNVTNF-GAFVDIGVHQDGLVHISSL 716
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
D + H +K G V V+++ + D R R + MR
Sbjct: 717 TDKFISDPHTVVKAGDVVKVKVM-EVDVERRRIGLSMRL 754
>gi|423098099|ref|ZP_17085895.1| S1 RNA binding domain protein [Pseudomonas fluorescens Q2-87]
gi|397887112|gb|EJL03595.1| S1 RNA binding domain protein [Pseudomonas fluorescens Q2-87]
Length = 774
Score = 46.2 bits (108), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++++G+ +L PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQDGVEDLKDLQPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|387891504|ref|YP_006321801.1| S1 RNA binding domain-containing protein [Pseudomonas fluorescens
A506]
gi|387162090|gb|AFJ57289.1| S1 RNA binding domain protein [Pseudomonas fluorescens A506]
Length = 774
Score = 46.2 bits (108), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++++G+ +L PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQDGVEDLKDLQPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|312958364|ref|ZP_07772885.1| S1 RNA binding domain protein [Pseudomonas fluorescens WH6]
gi|311287428|gb|EFQ65988.1| S1 RNA binding domain protein [Pseudomonas fluorescens WH6]
Length = 774
Score = 46.2 bits (108), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++++G+ +L PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQDGVEDLKDLQPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|120596942|ref|YP_961516.1| RNA-binding S1 domain-containing protein [Shewanella sp. W3-18-1]
gi|120557035|gb|ABM22962.1| RNA binding S1 domain protein [Shewanella sp. W3-18-1]
Length = 813
Score = 46.2 bits (108), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ ++EG+ EL P I EG VT V + GAFVDIG DG V I
Sbjct: 658 PGRDPRGEFKTAKFKEGIEELKHLKPEMILEGVVTNVTNF-GAFVDIGVHQDGLVHISSL 716
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
D + H +K G V V+++ + D R R + MR
Sbjct: 717 TDKFISDPHTVVKAGDVVKVKVM-EVDVERRRIGLSMRL 754
>gi|407714012|ref|YP_006834577.1| Tex-like protein [Burkholderia phenoliruptrix BR3459a]
gi|407236196|gb|AFT86395.1| Tex-like protein [Burkholderia phenoliruptrix BR3459a]
Length = 780
Score = 46.2 bits (108), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAF+D+G DG V +
Sbjct: 630 PGRDPRPEFKTATFREGVEKVSDLTPGMVLEGVVTNVAAF-GAFIDVGVHQDGLVHVSAM 688
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I+ +K G V V++L + D R R + MR
Sbjct: 689 STKFIKDPHEVVKAGQIVKVKVL-EVDVKRQRIALTMRL 726
>gi|393776851|ref|ZP_10365145.1| transcriptional accessory protein Tex [Ralstonia sp. PBA]
gi|392716208|gb|EIZ03788.1| transcriptional accessory protein Tex [Ralstonia sp. PBA]
Length = 778
Score = 46.2 bits (108), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ ++ PG + EG VT V + GAFVDIG DG V I
Sbjct: 634 PGRDPRPEFKTATFQEGVEDIRDLVPGMVLEGVVTNVAAF-GAFVDIGVHQDGLVHISAL 692
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 693 SNKFVKDPYEVVKAGQIVRVKVM-EVDAKRNRIGLSMRL 730
>gi|423689359|ref|ZP_17663879.1| S1 RNA binding domain protein [Pseudomonas fluorescens SS101]
gi|388000989|gb|EIK62318.1| S1 RNA binding domain protein [Pseudomonas fluorescens SS101]
Length = 774
Score = 46.2 bits (108), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++++G+ +L PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQDGVEDLKDLQPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|388470376|ref|ZP_10144585.1| S1 RNA binding domain protein [Pseudomonas synxantha BG33R]
gi|388007073|gb|EIK68339.1| S1 RNA binding domain protein [Pseudomonas synxantha BG33R]
Length = 774
Score = 46.2 bits (108), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++++G+ +L PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQDGVEDLKDLQPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|422652598|ref|ZP_16715379.1| S1 RNA binding domain-containing protein [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330965662|gb|EGH65922.1| S1 RNA binding domain-containing protein [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 773
Score = 46.2 bits (108), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++++G+ +L PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQDGVEDLKDLQPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|113867443|ref|YP_725932.1| transcriptional accessory protein [Ralstonia eutropha H16]
gi|113526219|emb|CAJ92564.1| transcriptional accessory protein [Ralstonia eutropha H16]
Length = 784
Score = 46.2 bits (108), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ ++ PG + EG VT V + GAFVDIG DG V I
Sbjct: 637 PGRDPRPEFKTATFQEGVEDVKDLQPGMVLEGVVTNVAAF-GAFVDIGVHQDGLVHISAL 695
Query: 309 DWYWIRHH---IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 696 SSKFVKDAHEVVKAGQIVKVKVM-EVDVKRNRIGLSMRL 733
>gi|120553401|ref|YP_957752.1| RNA-binding S1 domain-containing protein [Marinobacter aquaeolei
VT8]
gi|120323250|gb|ABM17565.1| RNA binding S1 domain protein [Marinobacter aquaeolei VT8]
Length = 774
Score = 46.2 bits (108), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 262 YEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWI---RHHIK 318
+EEG+ L PG + EG VT V + GAFVDIG DG V I ++ R +K
Sbjct: 638 FEEGVETLNDLKPGMVLEGSVTNVTNF-GAFVDIGVHQDGLVHISALSHTFVKDPREVVK 696
Query: 319 VGMHVIVEILAKRDPYRFRFPIEMRF-VQPNIDH 351
G V V+++ + D R R + MR QP D+
Sbjct: 697 AGDIVKVKVM-EVDIPRKRIGLSMRMDDQPGADN 729
>gi|374998569|ref|YP_004974068.1| Transcriptional accessory protein with RNA-binding S1 domain
[Azospirillum lipoferum 4B]
gi|357425994|emb|CBS88893.1| Transcriptional accessory protein with RNA-binding S1 domain
[Azospirillum lipoferum 4B]
Length = 780
Score = 46.2 bits (108), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIK-- 306
PGR R ++EG+ EL PG + EG VT V + GAFVDIG DG V I
Sbjct: 622 PGRDPRPEFKTATFKEGVEELKHLQPGMMLEGVVTNVTAF-GAFVDIGVHQDGLVHISQL 680
Query: 307 GNDWYWIRHH-IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
N + H +K G V V++L + D R R + MR
Sbjct: 681 ANSFVKDPHTVVKAGDVVKVKVL-EVDIPRKRIALTMRM 718
>gi|352090166|ref|ZP_08954338.1| Tex-like protein [Rhodanobacter sp. 2APBS1]
gi|351677544|gb|EHA60692.1| Tex-like protein [Rhodanobacter sp. 2APBS1]
Length = 775
Score = 46.2 bits (108), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG I EG+VT V + GAFVDIG DG V +
Sbjct: 623 PGRDPRPEFVAPSFAEGVEDVKDLRPGMILEGRVTNVAAF-GAFVDIGVHQDGLVHLSAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V+++ + D R R + MR
Sbjct: 682 SHSFVKDPRDAVKAGDIVKVKVM-EVDIPRQRIGLSMRL 719
>gi|330806957|ref|YP_004351419.1| S1 RNA binding domain-containing protein [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|423694791|ref|ZP_17669281.1| S1 RNA binding domain protein [Pseudomonas fluorescens Q8r1-96]
gi|327375065|gb|AEA66415.1| Conserved hypothetical protein; putative S1 RNA-binding domain
protiein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|388008626|gb|EIK69877.1| S1 RNA binding domain protein [Pseudomonas fluorescens Q8r1-96]
Length = 774
Score = 46.2 bits (108), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++++G+ +L PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQDGVEDLKDLQPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|146294886|ref|YP_001185310.1| RNA-binding S1 domain-containing protein [Shewanella putrefaciens
CN-32]
gi|145566576|gb|ABP77511.1| RNA binding S1 domain protein [Shewanella putrefaciens CN-32]
Length = 813
Score = 46.2 bits (108), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ ++EG+ EL P I EG VT V + GAFVDIG DG V I
Sbjct: 658 PGRDPRGEFKTAKFKEGIEELKHLKPEMILEGVVTNVTNF-GAFVDIGVHQDGLVHISSL 716
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
D + H +K G V V+++ + D R R + MR
Sbjct: 717 TDKFISDPHTVVKAGDVVKVKVM-EVDVERRRIGLSMRL 754
>gi|447919421|ref|YP_007399989.1| S1 RNA binding domain-containing protein [Pseudomonas poae
RE*1-1-14]
gi|445203284|gb|AGE28493.1| S1 RNA binding domain-containing protein [Pseudomonas poae
RE*1-1-14]
Length = 778
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++++G+ +L PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQDGVEDLKDLQPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|295676889|ref|YP_003605413.1| Tex-like protein [Burkholderia sp. CCGE1002]
gi|295436732|gb|ADG15902.1| Tex-like protein protein-like protein [Burkholderia sp. CCGE1002]
Length = 783
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAF+D+G DG V +
Sbjct: 630 PGRDPRPEFKTATFREGVEKVSDLIPGMVLEGVVTNVAAF-GAFIDVGVHQDGLVHVSAM 688
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V++L + D R R + MR
Sbjct: 689 STKFVKDPHEVVKAGQIVKVKVL-EVDVKRQRIALTMRL 726
>gi|339325591|ref|YP_004685284.1| transcriptional accessory protein Tex [Cupriavidus necator N-1]
gi|338165748|gb|AEI76803.1| transcriptional accessory protein Tex [Cupriavidus necator N-1]
Length = 783
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ ++ PG + EG VT V + GAFVDIG DG V I
Sbjct: 637 PGRDPRPEFKTATFQEGVEDVKDLQPGMVLEGVVTNVAAF-GAFVDIGVHQDGLVHISAL 695
Query: 309 DWYWIRHH---IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 696 SNKFVKDAHEVVKAGQVVKVKVM-EVDVKRNRIGLSMRL 733
>gi|52426262|ref|YP_089399.1| hypothetical protein MS2207 [Mannheimia succiniciproducens MBEL55E]
gi|52308314|gb|AAU38814.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 771
Score = 45.8 bits (107), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG+ E+ G I EG +T V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTATFMEGVEEITDLKAGMILEGTITNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGDVVKVKVL-EVDVARRRIALTMRL 721
>gi|372268104|ref|ZP_09504152.1| S1 RNA binding domain-containing protein [Alteromonas sp. S89]
Length = 782
Score = 45.8 bits (107), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 258 RGKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH-H 316
R +EEG+ E+ PG + EG VT V + GAFVDIG DG V I +++ H
Sbjct: 639 RTAKFEEGVEEIKDLRPGMVLEGTVTNVTNF-GAFVDIGVHQDGLVHISALSEKFVKDPH 697
Query: 317 IKVGMHVIVEI-LAKRDPYRFRFPIEMRF 344
V + IV++ + + D R R + MR
Sbjct: 698 EVVKANDIVKVKVMEVDVARKRIGLSMRM 726
>gi|224825246|ref|ZP_03698352.1| RNA binding S1 domain protein [Pseudogulbenkiania ferrooxidans
2002]
gi|224602917|gb|EEG09094.1| RNA binding S1 domain protein [Pseudogulbenkiania ferrooxidans
2002]
Length = 767
Score = 45.8 bits (107), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ +L PG + EG VT V + GAFVDIG DG V I
Sbjct: 626 PGRDPRPEFKTATFQEGVEDLKDLAPGMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 684
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V++ + D R R + MR
Sbjct: 685 SNKFIDDPRKVVKAGDVVKVKV-QEVDVKRRRIALTMRL 722
>gi|389799095|ref|ZP_10202099.1| transcriptional accessory protein [Rhodanobacter sp. 116-2]
gi|388443720|gb|EIL99857.1| transcriptional accessory protein [Rhodanobacter sp. 116-2]
Length = 776
Score = 45.8 bits (107), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG I EG+VT V + GAFVDIG DG V +
Sbjct: 623 PGRDPRPEFVAPSFAEGVEDVKDLRPGMILEGRVTNVAAF-GAFVDIGVHQDGLVHLSAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V+++ + D R R + MR
Sbjct: 682 SHSFVKDPRDAVKAGDIVKVKVM-EVDIPRQRIGLSMRL 719
>gi|145640544|ref|ZP_01796128.1| DNA gyrase subunit B [Haemophilus influenzae R3021]
gi|145275130|gb|EDK14992.1| DNA gyrase subunit B [Haemophilus influenzae 22.4-21]
Length = 770
Score = 45.8 bits (107), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ + EG+ E+ G I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTAVFAEGVEEITDLKSGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+D + H +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGNIVKVKVL-EVDVPRKRIALTMRL 721
>gi|407788997|ref|ZP_11136100.1| RNA binding S1 domain-containing protein [Gallaecimonas xiamenensis
3-C-1]
gi|407207589|gb|EKE77525.1| RNA binding S1 domain-containing protein [Gallaecimonas xiamenensis
3-C-1]
Length = 772
Score = 45.8 bits (107), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ L PG + EG VT V + GAFVDIG DG V I
Sbjct: 621 PGRDPRPEFTTASFAEGVETLNDLKPGMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISAM 679
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
I R +K G+ V V+++ + D R R + MR
Sbjct: 680 SERRINDPREVVKAGLVVKVKVM-EVDIPRKRIALSMRL 717
>gi|395764428|ref|ZP_10445097.1| Tex transcriptional accessory protein [Janthinobacterium lividum
PAMC 25724]
Length = 782
Score = 45.8 bits (107), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ E+ P I EG VT V + GAFVDIG DG V I
Sbjct: 637 PGRDPRPEFTTATFKEGVEEIRDLRPDMILEGVVTNVAAF-GAFVDIGVHQDGLVHISAL 695
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRFV 345
+++ +K G V V++L + D R R + MR
Sbjct: 696 SSTFVKDPHTVVKAGQVVRVKVL-EVDEKRKRIALTMRLT 734
>gi|145635345|ref|ZP_01791047.1| transcription elongation factor GreB [Haemophilus influenzae
PittAA]
gi|145267351|gb|EDK07353.1| transcription elongation factor GreB [Haemophilus influenzae
PittAA]
Length = 770
Score = 45.8 bits (107), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG+ E+ G I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTAVFAEGVEEITDLKSGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGNIVKVKVL-EVDVPRKRIALTMRL 721
>gi|445493820|ref|ZP_21460864.1| Tex-like protein [Janthinobacterium sp. HH01]
gi|444789981|gb|ELX11528.1| Tex-like protein [Janthinobacterium sp. HH01]
Length = 782
Score = 45.8 bits (107), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ E+ P I EG VT V + GAFVDIG DG V I
Sbjct: 637 PGRDPRPEFTTATFKEGVEEIRDLRPDMILEGVVTNVAAF-GAFVDIGVHQDGLVHISAL 695
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRFV 345
+++ +K G V V++L + D R R + MR
Sbjct: 696 SITFVKDPHTVVKAGQVVKVKVL-EVDEKRKRIALTMRLT 734
>gi|378696765|ref|YP_005178723.1| transcriptional accessory protein [Haemophilus influenzae 10810]
gi|301169284|emb|CBW28881.1| predicted transcriptional accessory protein [Haemophilus influenzae
10810]
Length = 770
Score = 45.8 bits (107), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ + EG+ E+ G I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTAVFAEGVEEITDLKSGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+D + H +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGNIVKVKVL-EVDVPRKRIALTMRL 721
>gi|209521839|ref|ZP_03270516.1| RNA binding S1 domain protein [Burkholderia sp. H160]
gi|209497722|gb|EDZ97900.1| RNA binding S1 domain protein [Burkholderia sp. H160]
Length = 784
Score = 45.8 bits (107), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAF+D+G DG V +
Sbjct: 630 PGRDPRPEFKTATFREGVEKVSDLIPGMVLEGVVTNVAAF-GAFIDVGVHQDGLVHVSAM 688
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V++L + D R R + MR
Sbjct: 689 STKFVKDPHEVVKAGQIVKVKVL-EVDVKRQRIALTMRL 726
>gi|389794324|ref|ZP_10197479.1| transcriptional accessory protein [Rhodanobacter fulvus Jip2]
gi|388432535|gb|EIL89536.1| transcriptional accessory protein [Rhodanobacter fulvus Jip2]
Length = 782
Score = 45.8 bits (107), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG I EG+VT V + GAF+DIG DG V +
Sbjct: 627 PGRDPRPEFVAPTFAEGVEDVKDLKPGMILEGRVTNVAAF-GAFIDIGVHQDGLVHVSAL 685
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V+++ + D R R + MR
Sbjct: 686 SHTFVKDPRDAVKAGDIVKVKVM-EIDLPRQRIGLSMRL 723
>gi|149376223|ref|ZP_01893987.1| Transcriptional accessory protein [Marinobacter algicola DG893]
gi|149359420|gb|EDM47880.1| Transcriptional accessory protein [Marinobacter algicola DG893]
Length = 776
Score = 45.8 bits (107), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 258 RGKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWI---R 314
R +EEG+ L PG + EG VT V + GAFVDIG DG V I ++ R
Sbjct: 634 RFASFEEGVETLNDLKPGMVLEGSVTNVTNF-GAFVDIGVHQDGLVHISALSNTFVKDPR 692
Query: 315 HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+K G V V+++ P R R + MR
Sbjct: 693 EVVKAGDIVKVKVMDVDIP-RKRIALSMRM 721
>gi|260581014|ref|ZP_05848837.1| transcription accessory protein [Haemophilus influenzae RdAW]
gi|260092373|gb|EEW76313.1| transcription accessory protein [Haemophilus influenzae RdAW]
Length = 770
Score = 45.4 bits (106), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ + EG+ E+ G I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTAVFAEGVEEITDLKSGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+D + H +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGNIVKVKVL-EVDVPRKRIALTMRL 721
>gi|145631752|ref|ZP_01787513.1| transcription elongation factor GreB [Haemophilus influenzae R3021]
gi|144982613|gb|EDJ90159.1| transcription elongation factor GreB [Haemophilus influenzae R3021]
Length = 770
Score = 45.4 bits (106), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG+ E+ G I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTAVFAEGVEEITDLKSGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGNIVKVKVL-EVDVPRKRIALTMRL 721
>gi|89892399|gb|ABD78984.1| HI0568-like protein [Haemophilus influenzae]
Length = 770
Score = 45.4 bits (106), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ + EG+ E+ G I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTAVFAEGVEEITDLKSGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+D + H +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGNIVKVKVL-EVDVPRKRIALTMRL 721
>gi|194289459|ref|YP_002005366.1| transcriptional accessory protein [Cupriavidus taiwanensis LMG
19424]
gi|193223294|emb|CAQ69299.1| transcriptional accessory protein [Cupriavidus taiwanensis LMG
19424]
Length = 781
Score = 45.4 bits (106), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ ++ PG + EG VT V + GAFVDIG DG V I
Sbjct: 637 PGRDPRPEFKTATFQEGVEDVKDLQPGMVLEGVVTNVAAF-GAFVDIGVHQDGLVHISAL 695
Query: 309 DWYWIRHH---IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 696 SNKFVKDAHEVVKAGQIVKVKVM-EVDVKRNRIGLSMRL 733
>gi|343517793|ref|ZP_08754789.1| Tex-like protein N-terminal domain protein [Haemophilus pittmaniae
HK 85]
gi|343394644|gb|EGV07191.1| Tex-like protein N-terminal domain protein [Haemophilus pittmaniae
HK 85]
Length = 767
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ + +G+ E+ PG I EG VT V + GAF+DIG DG V I
Sbjct: 625 PGRDPRGEFKTAVFADGVEEITDLKPGMILEGTVTNVTNF-GAFIDIGVHQDGLVHISSL 683
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+D + H +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGDIVKVKVL-EVDIPRKRIALTMRL 721
>gi|16272511|ref|NP_438725.1| transcription accessory protein [Haemophilus influenzae Rd KW20]
gi|2501167|sp|P71353.1|Y568_HAEIN RecName: Full=Uncharacterized protein HI_0568
gi|1573555|gb|AAC22226.1| transcription accessory protein (tex) [Haemophilus influenzae Rd
KW20]
Length = 762
Score = 45.4 bits (106), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG+ E+ G I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTAVFAEGVEEITDLKSGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGNIVKVKVL-EVDVPRKRIALTMRL 721
>gi|288960277|ref|YP_003450617.1| S1 RNA-binding domain-containing protein [Azospirillum sp. B510]
gi|288912585|dbj|BAI74073.1| S1 RNA-binding domain-containing protein [Azospirillum sp. B510]
Length = 784
Score = 45.4 bits (106), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIK-- 306
PGR R ++EG+ EL PG + EG VT V + GAFVDIG DG V I
Sbjct: 622 PGRDPRPEFKTATFKEGVEELKHLQPGMMLEGVVTNVTAF-GAFVDIGVHQDGLVHISQL 680
Query: 307 GNDWYWIRHH-IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
N + H +K G V V++L + D R R + MR
Sbjct: 681 ANSFVKDPHTVVKAGDVVKVKVL-EVDIPRKRVALTMRM 718
>gi|229846658|ref|ZP_04466766.1| transcription elongation factor GreB [Haemophilus influenzae
7P49H1]
gi|229810751|gb|EEP46469.1| transcription elongation factor GreB [Haemophilus influenzae
7P49H1]
Length = 770
Score = 45.4 bits (106), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG+ E+ G I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTAVFAEGVEEITDLKSGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGNIVKVKVL-EVDVPRKRIALTMRL 721
>gi|148825153|ref|YP_001289906.1| transcription elongation factor GreB [Haemophilus influenzae
PittEE]
gi|148715313|gb|ABQ97523.1| transcription elongation factor GreB [Haemophilus influenzae
PittEE]
Length = 770
Score = 45.4 bits (106), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ + EG+ E+ G I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTAVFAEGVEEITDLKSGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+D + H +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGNIVKVKVL-EVDVPRKRIALTMRL 721
>gi|386265045|ref|YP_005828537.1| transcription accessory protein Tex [Haemophilus influenzae R2846]
gi|309972281|gb|ADO95482.1| Probable transcription accessory protein Tex [Haemophilus
influenzae R2846]
Length = 770
Score = 45.4 bits (106), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG+ E+ G I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTAVFAEGVEEITDLKSGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGNIVKVKVL-EVDVPRKRIALTMRL 721
>gi|430807834|ref|ZP_19434949.1| putative RNA-binding transcription accessory protein [Cupriavidus
sp. HMR-1]
gi|429499866|gb|EKZ98265.1| putative RNA-binding transcription accessory protein [Cupriavidus
sp. HMR-1]
Length = 787
Score = 45.4 bits (106), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ ++ PG + EG VT V + GAFVDIG DG V I
Sbjct: 637 PGRDPRPEFKTATFQDGVEDVKDLQPGMVLEGVVTNVAAF-GAFVDIGVHQDGLVHISAL 695
Query: 309 DWYWIRHH---IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 696 STKFVKDAHEVVKAGQIVKVKVM-EVDVKRNRIGLTMRL 733
>gi|357402665|ref|YP_004914590.1| transcriptional accessory protein [Streptomyces cattleya NRRL 8057
= DSM 46488]
gi|386358742|ref|YP_006056988.1| transcription accessory protein [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337769074|emb|CCB77787.1| transcriptional accessory protein [Streptomyces cattleya NRRL 8057
= DSM 46488]
gi|365809250|gb|AEW97466.1| transcription accessory protein [Streptomyces cattleya NRRL 8057 =
DSM 46488]
Length = 795
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 258 RGKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWI---R 314
R Y+EG+ E+ PG + EG VT V + GAFVD+G DG V + ++ R
Sbjct: 643 RTATYKEGVEEIKDLTPGMLLEGTVTNVAAF-GAFVDVGVHQDGLVHVSAMSKSFVKDPR 701
Query: 315 HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+K G V V++L + D R R + +R
Sbjct: 702 DVVKPGDVVRVKVL-EVDIARKRIGLTLRL 730
>gi|399019195|ref|ZP_10721344.1| transcriptional accessory protein [Herbaspirillum sp. CF444]
gi|398098342|gb|EJL88629.1| transcriptional accessory protein [Herbaspirillum sp. CF444]
Length = 783
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ E+ P I EG VT V + GAFVDIG DG V I
Sbjct: 637 PGRDPRPEFTTATFKEGVEEIRDLRPDMILEGVVTNVAAF-GAFVDIGVHQDGLVHISAL 695
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V++L + D R R + MR
Sbjct: 696 SNTFVKDPHTVVKAGQVVKVKVL-EVDEKRKRIALTMRL 733
>gi|319897916|ref|YP_004136113.1| transcriptional accessory protein [Haemophilus influenzae F3031]
gi|317433422|emb|CBY81803.1| predicted transcriptional accessory protein [Haemophilus influenzae
F3031]
Length = 770
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG+ E+ G I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTAVFAEGVEEITDLKSGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGNIVKVKVL-EVDVPRKRIALTMRL 721
>gi|422296340|ref|ZP_16384011.1| S1 RNA binding domain-containing protein [Pseudomonas avellanae
BPIC 631]
gi|407992516|gb|EKG34134.1| S1 RNA binding domain-containing protein [Pseudomonas avellanae
BPIC 631]
Length = 773
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ +L PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAAFQDGVEDLKDLQPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|407691683|ref|YP_006816472.1| transcriptional accessory protein [Actinobacillus suis H91-0380]
gi|407387740|gb|AFU18233.1| transcriptional accessory protein [Actinobacillus suis H91-0380]
Length = 779
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIK-- 306
PGR RG+ + +G+ ++ G I EG VT V + GAFVDIG DG V I
Sbjct: 632 PGRDPRGEFKTATFMDGVEDIKDLKVGMILEGTVTNVANF-GAFVDIGVHQDGLVHISML 690
Query: 307 GNDWYWIRHH-IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
N + H +KVG V V++L + D R R + MR
Sbjct: 691 SNSFVEDPHKVVKVGNLVKVKVL-EVDVQRKRIALTMRL 728
>gi|399543520|ref|YP_006556828.1| protein yhgF [Marinobacter sp. BSs20148]
gi|399158852|gb|AFP29415.1| Protein yhgF [Marinobacter sp. BSs20148]
Length = 781
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + +EEG+ L PG + EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFRFASFEEGVETLKDLEPGMVLEGSVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 ADRFIKDPREVVKAGDIVKVKVM-EVDIPRKRIALTMRM 719
>gi|50954808|ref|YP_062096.1| 30S ribosomal protein S1 [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50951290|gb|AAT88991.1| 30S ribosomal protein S1 [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 480
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 269 LPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHH---IKVGMHVIV 325
L Y GQ+ +G V+++ + GAFVD+GGV DG V + W I H ++VG V V
Sbjct: 205 LNNLYKGQVRKGVVSSIVNF-GAFVDLGGV-DGLVHVSELSWKHIEHASEVVEVGQEVTV 262
Query: 326 EILAKRDPYRFRFPIEMRFVQPN 348
EIL + D R R + ++ Q +
Sbjct: 263 EIL-EVDLDRERVSLSLKATQED 284
>gi|94310177|ref|YP_583387.1| putative RNA-binding transcription accessory protein [Cupriavidus
metallidurans CH34]
gi|93354029|gb|ABF08118.1| Putative RNA-binding transcription accessory protein [Cupriavidus
metallidurans CH34]
Length = 787
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ ++ PG + EG VT V + GAFVDIG DG V I
Sbjct: 637 PGRDPRPEFKTATFQDGVEDVKDLQPGMVLEGVVTNVAAF-GAFVDIGVHQDGLVHISAL 695
Query: 309 DWYWIRHH---IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 696 STKFVKDAHEVVKAGQIVKVKVM-EVDVKRNRIGLTMRL 733
>gi|372489173|ref|YP_005028738.1| transcriptional accessory protein [Dechlorosoma suillum PS]
gi|359355726|gb|AEV26897.1| transcriptional accessory protein [Dechlorosoma suillum PS]
Length = 771
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ E+ PG I EG VT V + GAFVDIG DG V +
Sbjct: 630 PGRDPRPEFKTAVFKDGVEEMRDLQPGMILEGVVTNVAAF-GAFVDIGVHQDGLVHVSAL 688
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V++L + D R R + MR
Sbjct: 689 STKFVKDPHEVVKAGDIVKVKVL-EVDMARKRIALTMRL 726
>gi|422588291|ref|ZP_16662959.1| S1 RNA binding domain-containing protein [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330874560|gb|EGH08709.1| S1 RNA binding domain-containing protein [Pseudomonas syringae pv.
morsprunorum str. M302280]
Length = 773
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ +L PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAAFQDGVEDLKDLQPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|347539415|ref|YP_004846840.1| transcriptional accessory protein [Pseudogulbenkiania sp. NH8B]
gi|345642593|dbj|BAK76426.1| transcriptional accessory protein [Pseudogulbenkiania sp. NH8B]
Length = 767
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ +L PG + EG VT V + GAFVD+G DG V I
Sbjct: 626 PGRDPRPEFKTATFQEGVEDLKDLVPGMVLEGVVTNVTNF-GAFVDVGVHQDGLVHISAL 684
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V++ + D R R + MR
Sbjct: 685 SNKFIDDPRKVVKAGDVVKVKV-QEVDVKRRRIALTMRL 722
>gi|337747030|ref|YP_004641192.1| RNA binding S1 domain-containing protein [Paenibacillus
mucilaginosus KNP414]
gi|379720890|ref|YP_005313021.1| RNA binding S1 domain-containing protein [Paenibacillus
mucilaginosus 3016]
gi|386723496|ref|YP_006189822.1| RNA binding S1 domain-containing protein [Paenibacillus
mucilaginosus K02]
gi|336298219|gb|AEI41322.1| RNA binding S1 domain protein [Paenibacillus mucilaginosus KNP414]
gi|378569562|gb|AFC29872.1| RNA binding S1 domain-containing protein [Paenibacillus
mucilaginosus 3016]
gi|384090621|gb|AFH62057.1| RNA binding S1 domain-containing protein [Paenibacillus
mucilaginosus K02]
Length = 414
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 23/125 (18%)
Query: 227 KQYNQWVAANKDRLEEESYKYDQDYYPGRRKRGKDYEEGMYELPFYYPGQICEGKVTTVH 286
++ N+ + + KD L+EE + G++K E + +L GQ+ +G V +
Sbjct: 175 REKNKVILSQKDVLDEE--------FEGKKK------EVLAKLSV---GQVLDGTVQRLT 217
Query: 287 LYQGAFVDIGGVYDGWVPIKGNDWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMR 343
+ GAFVDIGGV DG V I W+ + +K G V V++L K DP R + ++
Sbjct: 218 QF-GAFVDIGGV-DGLVHISEMAWHHVEKPSEVVKEGDKVQVQVL-KVDPENERISLSIK 274
Query: 344 FVQPN 348
QP
Sbjct: 275 ATQPG 279
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 263 EEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWI---RHHIKV 319
EE M ++ F G I +GKV V Q AFVD+G YDG VP+K + ++++
Sbjct: 21 EESMADVTFIKKGDIVKGKVIKVDADQ-AFVDVGYKYDGVVPVKELSSVQVDDASQNVEI 79
Query: 320 GMHVIVEILAKRDPYRFRFPIEMRFV 345
G + +++L D +R + + R V
Sbjct: 80 GQEIELKVLT-IDDHREKLVLSKRAV 104
>gi|289449430|ref|YP_003475339.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridiales
genomosp. BVAB3 str. UPII9-5]
gi|289183977|gb|ADC90402.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridiales
genomosp. BVAB3 str. UPII9-5]
Length = 704
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
G I EG V ++ + GAFVDIGGV DG V + W I+H IKVG H+ V + +
Sbjct: 517 GDIREGVVRSLTDF-GAFVDIGGV-DGLVHVSELSWNRIKHPSEVIKVGDHIQVYV-KEF 573
Query: 332 DPYRFRFPIEMRFVQPNIDHLIFNRFDFAPIFH 364
DP R R + + ++ + H I RF I H
Sbjct: 574 DPERKRISLGYKRIEDDPYHDIETRFPIGTIVH 606
>gi|145628950|ref|ZP_01784750.1| predicted transcriptional accessory protein [Haemophilus influenzae
22.1-21]
gi|144979420|gb|EDJ89106.1| predicted transcriptional accessory protein [Haemophilus influenzae
22.1-21]
Length = 648
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG+ E+ G I EG VT V + GAFVDIG DG V I
Sbjct: 503 PGRDPRGEFKTAVFAEGVEEITDLKSGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 561
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ +K G V V++L + D R R + MR
Sbjct: 562 SDKFVEDPHQVVKTGNIVKVKVL-EVDVPRKRIALTMRL 599
>gi|167031288|ref|YP_001666519.1| RNA-binding S1 domain-containing protein [Pseudomonas putida GB-1]
gi|166857776|gb|ABY96183.1| RNA binding S1 domain protein [Pseudomonas putida GB-1]
Length = 774
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ +L PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTATFQDGVEDLKDLEPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|91791611|ref|YP_561262.1| RNA binding S1 [Shewanella denitrificans OS217]
gi|91713613|gb|ABE53539.1| RNA binding S1 [Shewanella denitrificans OS217]
Length = 799
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ ++EG+ EL P I EG VT V + GAFVD+G DG V I
Sbjct: 630 PGRDPRGEFKTASFKEGVEELKDLKPEMILEGVVTNVTNF-GAFVDVGVHQDGLVHISSL 688
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
D + H +K G V V+++ + D R R + MR
Sbjct: 689 TDKFVSDPHTIVKAGDVVKVKVM-EVDIERRRIGLSMRL 726
>gi|300703935|ref|YP_003745537.1| transcriptional accessory protein [Ralstonia solanacearum CFBP2957]
gi|299071598|emb|CBJ42922.1| transcriptional accessory protein [Ralstonia solanacearum CFBP2957]
Length = 780
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ ++ PG + EG VT V + GAF+DIG DG V +
Sbjct: 638 PGRDPRPEFKTATFQDGVEDIKHLQPGMVLEGVVTNVAAF-GAFIDIGVHQDGLVHVSAL 696
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++R +K G V V+++ + D R R + MR
Sbjct: 697 STKFVRDPHEVVKPGQIVKVKVM-EVDVKRNRIGLTMRL 734
>gi|386333369|ref|YP_006029538.1| transcriptional accessory protein [Ralstonia solanacearum Po82]
gi|334195819|gb|AEG69004.1| transcriptional accessory protein [Ralstonia solanacearum Po82]
Length = 780
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ ++ PG + EG VT V + GAF+DIG DG V +
Sbjct: 638 PGRDPRPEFKTATFQDGVEDIKHLQPGMVLEGVVTNVAAF-GAFIDIGVHQDGLVHVSAL 696
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++R +K G V V+++ + D R R + MR
Sbjct: 697 STKFVRDPHEVVKPGQIVKVKVM-EVDVKRNRIGLTMRL 734
>gi|237807289|ref|YP_002891729.1| RNA binding S1 domain-containing protein [Tolumonas auensis DSM
9187]
gi|237499550|gb|ACQ92143.1| RNA binding S1 domain protein [Tolumonas auensis DSM 9187]
Length = 767
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ EL P I EG VT V + GAFVDIG DG V I
Sbjct: 621 PGRDPRPEFKTATFREGVEELKDLKPDMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAI 679
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V++L P R R + MR
Sbjct: 680 TNRYISDPREVVKAGDIVKVKVLEVDIP-RKRIALTMRL 717
>gi|414165119|ref|ZP_11421366.1| competence protein ComEA helix-hairpin-helix repeat region [Afipia
felis ATCC 53690]
gi|410882899|gb|EKS30739.1| competence protein ComEA helix-hairpin-helix repeat region [Afipia
felis ATCC 53690]
Length = 769
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++++G+ L PG + EG VT V + GAFVDIG DG V +
Sbjct: 624 PGRDPRPAFKTAEFKDGVETLSDLRPGMVLEGAVTNVAAF-GAFVDIGVHQDGLVHVSAM 682
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L P R R + +R
Sbjct: 683 SKTFVKDPRSVVKPGDIVRVKVLEVDQP-RKRISLSLRL 720
>gi|126666627|ref|ZP_01737605.1| General secretion pathway protein J [Marinobacter sp. ELB17]
gi|126629015|gb|EAZ99634.1| General secretion pathway protein J [Marinobacter sp. ELB17]
Length = 304
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + +EEG+ L PG + EG VT V + GAFVDIG DG V I
Sbjct: 140 PGRDPRPEFRFASFEEGVETLKDLEPGMVLEGSVTNVTNF-GAFVDIGVHQDGLVHISAL 198
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 199 ADRFIKDPREVVKAGDIVKVKVM-EVDIPRKRIALTMRM 236
>gi|398848301|ref|ZP_10605124.1| transcriptional accessory protein [Pseudomonas sp. GM84]
gi|398248825|gb|EJN34223.1| transcriptional accessory protein [Pseudomonas sp. GM84]
Length = 774
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ +L PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTATFQDGVEDLKDLEPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|398992151|ref|ZP_10695191.1| transcriptional accessory protein [Pseudomonas sp. GM24]
gi|399015717|ref|ZP_10717979.1| transcriptional accessory protein [Pseudomonas sp. GM16]
gi|398107978|gb|EJL97967.1| transcriptional accessory protein [Pseudomonas sp. GM16]
gi|398133631|gb|EJM22819.1| transcriptional accessory protein [Pseudomonas sp. GM24]
Length = 774
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++EG+ +L G I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQEGVEDLKDLQLGMILEGVVTNVTAF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|431800288|ref|YP_007227191.1| RNA-binding S1 domain-containing protein [Pseudomonas putida
HB3267]
gi|430791053|gb|AGA71248.1| RNA-binding S1 domain-containing protein [Pseudomonas putida
HB3267]
Length = 774
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ +L PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTATFQDGVEDLKDLEPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|339485175|ref|YP_004699703.1| RNA-binding S1 domain-containing protein [Pseudomonas putida S16]
gi|338836018|gb|AEJ10823.1| RNA-binding S1 domain-containing protein [Pseudomonas putida S16]
Length = 774
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ +L PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTATFQDGVEDLKDLEPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|398965524|ref|ZP_10681036.1| transcriptional accessory protein [Pseudomonas sp. GM30]
gi|398147036|gb|EJM35756.1| transcriptional accessory protein [Pseudomonas sp. GM30]
Length = 774
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++EG+ +L G I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQEGVEDLKDLQLGMILEGVVTNVTAF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|421749897|ref|ZP_16187244.1| RNA binding S1, partial [Cupriavidus necator HPC(L)]
gi|409771153|gb|EKN53548.1| RNA binding S1, partial [Cupriavidus necator HPC(L)]
Length = 753
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ ++ PG + EG VT V + GAFVDIG DG V I
Sbjct: 637 PGRDPRPEFKTATFQDGVEDIKDLQPGMVLEGVVTNVAAF-GAFVDIGVHQDGLVHISAL 695
Query: 309 DWYWIRHH---IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 696 SNKFVKDAHEVVKAGQIVKVKVM-EVDVKRNRIGLSMRL 733
>gi|77456487|ref|YP_345992.1| RNA binding S1 [Pseudomonas fluorescens Pf0-1]
gi|77380490|gb|ABA72003.1| putative S1 RNA-binding domain protein [Pseudomonas fluorescens
Pf0-1]
Length = 774
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++EG+ +L G I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQEGVEDLKDLQLGMILEGVVTNVTAF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|388546996|ref|ZP_10150266.1| S1 RNA binding domain-containing protein [Pseudomonas sp. M47T1]
gi|388274917|gb|EIK94509.1| S1 RNA binding domain-containing protein [Pseudomonas sp. M47T1]
Length = 773
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ +L PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAAFQDGVEDLKDLEPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|398851282|ref|ZP_10607968.1| transcriptional accessory protein [Pseudomonas sp. GM80]
gi|398246791|gb|EJN32265.1| transcriptional accessory protein [Pseudomonas sp. GM80]
Length = 774
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++EG+ +L G I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQEGVEDLKDLQLGMILEGVVTNVTAF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|398975408|ref|ZP_10685556.1| transcriptional accessory protein [Pseudomonas sp. GM25]
gi|398140632|gb|EJM29594.1| transcriptional accessory protein [Pseudomonas sp. GM25]
Length = 774
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++EG+ +L G I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQEGVEDLKDLQLGMILEGVVTNVTAF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFIKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|160877436|ref|YP_001556752.1| RNA-binding S1 domain-containing protein [Shewanella baltica OS195]
gi|378710649|ref|YP_005275543.1| Tex-like protein [Shewanella baltica OS678]
gi|160862958|gb|ABX51492.1| RNA binding S1 domain protein [Shewanella baltica OS195]
gi|315269638|gb|ADT96491.1| Tex-like protein protein-like protein [Shewanella baltica OS678]
Length = 787
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ +++G+ EL P + EG VT V + GAFVDIG DG V I
Sbjct: 630 PGRDPRGEFKTAKFKDGVEELKHLKPEMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISSL 688
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
D + H +K G V V+++ + D R R + MR
Sbjct: 689 TDKFISDPHTIVKAGDVVKVKVM-EVDVERRRIGLSMRL 726
>gi|418022767|ref|ZP_12661753.1| Tex-like protein [Shewanella baltica OS625]
gi|353537769|gb|EHC07325.1| Tex-like protein [Shewanella baltica OS625]
Length = 787
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ +++G+ EL P + EG VT V + GAFVDIG DG V I
Sbjct: 630 PGRDPRGEFKTAKFKDGVEELKHLKPEMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISSL 688
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
D + H +K G V V+++ + D R R + MR
Sbjct: 689 TDKFISDPHTIVKAGDVVKVKVM-EVDVERRRIGLSMRL 726
>gi|304406967|ref|ZP_07388621.1| RNA binding S1 domain protein [Paenibacillus curdlanolyticus YK9]
gi|304343954|gb|EFM09794.1| RNA binding S1 domain protein [Paenibacillus curdlanolyticus YK9]
Length = 407
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 274 PGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAK 330
PGQ EG V + + GAF+DIGG+ DG V + W + H + G V V++L K
Sbjct: 202 PGQELEGTVQRLTPF-GAFIDIGGI-DGLVHVSEISWQHVAHPKDAVSEGQSVRVKVL-K 258
Query: 331 RDPYRFRFPIEMRFVQPN 348
DP + + M+ QP
Sbjct: 259 VDPAAGKISLSMKAAQPG 276
>gi|217970449|ref|YP_002355683.1| RNA binding S1 domain-containing protein [Thauera sp. MZ1T]
gi|217507776|gb|ACK54787.1| RNA binding S1 domain protein [Thauera sp. MZ1T]
Length = 795
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 258 RGKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIR--- 314
R + EG+ L PG + EG VT V + GAFVDIG DG V I +++
Sbjct: 633 RTATFREGVETLKDLEPGMLLEGVVTNVTNF-GAFVDIGVHQDGLVHISALSNTFVKDPH 691
Query: 315 HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+K G V V++L + D R R + MR
Sbjct: 692 SVVKAGQVVKVKVL-EVDIPRHRIALTMRL 720
>gi|386018967|ref|YP_005936991.1| S1 RNA-binding domain-containing protein [Pseudomonas stutzeri DSM
4166]
gi|327478939|gb|AEA82249.1| S1 RNA-binding domain-containing protein [Pseudomonas stutzeri DSM
4166]
Length = 772
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++++G+ +L PG + EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQDGVEKLSDLEPGMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V+V+++ + D R R + MR
Sbjct: 682 SEKFVKDPYEVVKAGDIVMVKVM-EVDIPRQRVGLSMRM 719
>gi|126172391|ref|YP_001048540.1| RNA-binding S1 domain-containing protein [Shewanella baltica OS155]
gi|386339163|ref|YP_006035529.1| Tex-like protein [Shewanella baltica OS117]
gi|125995596|gb|ABN59671.1| RNA binding S1 domain protein [Shewanella baltica OS155]
gi|334861564|gb|AEH12035.1| Tex-like protein [Shewanella baltica OS117]
Length = 787
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ +++G+ EL P + EG VT V + GAFVDIG DG V I
Sbjct: 630 PGRDPRGEFKTAKFKDGVEELKHLKPEMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISSL 688
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
D + H +K G V V+++ + D R R + MR
Sbjct: 689 TDKFISDPHTVVKAGDVVKVKVM-EVDVERRRIGLSMRL 726
>gi|397695722|ref|YP_006533605.1| Protein yhgF [Pseudomonas putida DOT-T1E]
gi|397332452|gb|AFO48811.1| Protein yhgF [Pseudomonas putida DOT-T1E]
Length = 774
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ +L PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTATFQDGVEDLKDLEPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFVKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|352289392|gb|AEQ62040.1| Tex, partial [Neisseria meningitidis]
Length = 697
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEIL 328
++ R +K G V V++L
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL 695
>gi|148545516|ref|YP_001265618.1| RNA-binding S1 domain-containing protein [Pseudomonas putida F1]
gi|148509574|gb|ABQ76434.1| RNA binding S1 domain protein [Pseudomonas putida F1]
Length = 774
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ +L PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTATFQDGVEDLKDLEPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFVKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|113972136|ref|YP_735929.1| RNA-binding S1 domain-containing protein [Shewanella sp. MR-4]
gi|113886820|gb|ABI40872.1| RNA binding S1 domain protein [Shewanella sp. MR-4]
Length = 779
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ +++G+ EL P I EG VT V + GAFVDIG DG V I
Sbjct: 626 PGRDPRGEFKTAKFKDGVEELKDLKPEMILEGVVTNVTNF-GAFVDIGVHQDGLVHISSL 684
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
D + H +K G V V+++ + D R R + MR
Sbjct: 685 TDKFITDPHTVVKAGDVVKVKVM-EVDVERRRIGLSMRL 722
>gi|117922444|ref|YP_871636.1| RNA-binding S1 domain-containing protein [Shewanella sp. ANA-3]
gi|117614776|gb|ABK50230.1| RNA binding S1 domain protein [Shewanella sp. ANA-3]
Length = 779
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ +++G+ EL P I EG VT V + GAFVDIG DG V I
Sbjct: 626 PGRDPRGEFKTAKFKDGVEELKDLKPEMILEGVVTNVTNF-GAFVDIGVHQDGLVHISSL 684
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
D + H +K G V V+++ + D R R + MR
Sbjct: 685 TDKFITDPHTVVKAGDVVKVKVM-EVDVERRRIGLSMRL 722
>gi|421525117|ref|ZP_15971738.1| RNA-binding S1 domain-containing protein [Pseudomonas putida LS46]
gi|402751580|gb|EJX12093.1| RNA-binding S1 domain-containing protein [Pseudomonas putida LS46]
Length = 774
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ +L PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTATFQDGVEDLKDLEPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFVKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|384428056|ref|YP_005637415.1| RNA binding S1 [Xanthomonas campestris pv. raphani 756C]
gi|341937158|gb|AEL07297.1| RNA binding S1 [Xanthomonas campestris pv. raphani 756C]
Length = 787
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG I EG V+ V + GAFVDIG DG V I
Sbjct: 629 PGRDPRPEFKAAQFAEGIEDIKHLKPGMILEGVVSNVAAF-GAFVDIGVHQDGLVHISAL 687
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + R
Sbjct: 688 SDTFVKDPRDVVKAGDIVKVKVL-EVDVARKRIALTRRL 725
>gi|24376102|ref|NP_720145.1| transcriptional accessory protein Tex [Shewanella oneidensis MR-1]
gi|24351131|gb|AAN57589.1| transcriptional accessory protein Tex [Shewanella oneidensis MR-1]
Length = 784
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ +++G+ EL P I EG VT V + GAFVDIG DG V I
Sbjct: 626 PGRDPRGEFKTAKFKDGVEELKDLKPEMILEGVVTNVTNF-GAFVDIGVHQDGLVHISSL 684
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
D + H +K G V V+++ + D R R + MR
Sbjct: 685 TDKFITDPHTVVKAGDVVKVKVM-EVDVERRRIGLSMRL 722
>gi|373947633|ref|ZP_09607594.1| Tex-like protein [Shewanella baltica OS183]
gi|386326521|ref|YP_006022638.1| Tex-like protein [Shewanella baltica BA175]
gi|333820666|gb|AEG13332.1| Tex-like protein [Shewanella baltica BA175]
gi|373884233|gb|EHQ13125.1| Tex-like protein [Shewanella baltica OS183]
Length = 787
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ +++G+ EL P + EG VT V + GAFVDIG DG V I
Sbjct: 630 PGRDPRGEFKTAKFKDGVEELKHLKPEMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISSL 688
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
D + H +K G V V+++ + D R R + MR
Sbjct: 689 TDKFISDPHTIVKAGDVVKVKVM-EVDVERRRIGLSMRL 726
>gi|302038462|ref|YP_003798784.1| putative transcriptional accessory protein [Candidatus Nitrospira
defluvii]
gi|300606526|emb|CBK42859.1| predicted Transcriptional accessory protein [Candidatus Nitrospira
defluvii]
Length = 799
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + +G+ L PG + EG VT V + GAFVDIG DG V +
Sbjct: 650 PGRDPRPEFKTATFRDGVESLADLQPGMVLEGVVTNVAAF-GAFVDIGVHQDGLVHVSAL 708
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V++LA P R R + MR
Sbjct: 709 ANKFVKDPHEVVKPGQIVKVKVLAVDVP-RQRISLTMRM 746
>gi|153002700|ref|YP_001368381.1| RNA-binding S1 domain-containing protein [Shewanella baltica OS185]
gi|151367318|gb|ABS10318.1| RNA binding S1 domain protein [Shewanella baltica OS185]
Length = 787
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ +++G+ EL P + EG VT V + GAFVDIG DG V I
Sbjct: 630 PGRDPRGEFKTAKFKDGVEELKHLKPEMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISSL 688
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
D + H +K G V V+++ + D R R + MR
Sbjct: 689 TDKFISDPHTIVKAGDVVKVKVM-EVDVERRRIGLSMRL 726
>gi|217975273|ref|YP_002360024.1| RNA-binding S1 domain-containing protein [Shewanella baltica OS223]
gi|217500408|gb|ACK48601.1| RNA binding S1 domain protein [Shewanella baltica OS223]
Length = 787
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ +++G+ EL P + EG VT V + GAFVDIG DG V I
Sbjct: 630 PGRDPRGEFKTAKFKDGVEELKHLKPEMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISSL 688
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
D + H +K G V V+++ + D R R + MR
Sbjct: 689 TDKFISDPHTIVKAGDVVKVKVM-EVDVERRRIGLSMRL 726
>gi|408501167|ref|YP_006865086.1| 30S ribosomal protein S1 [Bifidobacterium asteroides PRL2011]
gi|408465991|gb|AFU71520.1| 30S ribosomal protein S1 [Bifidobacterium asteroides PRL2011]
Length = 501
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGTVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DMDRERISLSLKATQ 280
>gi|325272397|ref|ZP_08138792.1| RNA-binding S1 domain-containing protein [Pseudomonas sp. TJI-51]
gi|324102474|gb|EGB99925.1| RNA-binding S1 domain-containing protein [Pseudomonas sp. TJI-51]
Length = 774
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ +L PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTATFQDGVEDLKDLEPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFVKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|386009903|ref|YP_005928180.1| S1 RNA-binding domain-containing protein [Pseudomonas putida
BIRD-1]
gi|313496609|gb|ADR57975.1| S1 RNA-binding domain-containing protein [Pseudomonas putida
BIRD-1]
Length = 774
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ +L PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTATFQDGVEDLKDLEPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFVKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|28493260|ref|NP_787421.1| 30S ribosomal protein S1 [Tropheryma whipplei str. Twist]
gi|28476301|gb|AAO44390.1| 30S ribosomal protein S1 [Tropheryma whipplei str. Twist]
Length = 473
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 272 YYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEIL 328
+ GQ+ +G V+++ + GAFVD+GG+ DG V I W + +KVG V VEIL
Sbjct: 199 LHKGQVRKGTVSSIVSF-GAFVDLGGI-DGLVHISEISWKHVTQPSEVLKVGEEVTVEIL 256
Query: 329 AKRDPYRFRFPIEMRFVQ 346
+ D R R + +R Q
Sbjct: 257 -EVDSERHRVSLSLRATQ 273
>gi|114049369|ref|YP_739919.1| RNA-binding S1 domain-containing protein [Shewanella sp. MR-7]
gi|113890811|gb|ABI44862.1| RNA binding S1 domain protein [Shewanella sp. MR-7]
Length = 779
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ +++G+ EL P I EG VT V + GAFVDIG DG V I
Sbjct: 626 PGRDPRGEFKTAKFKDGVEELKDLKPEMILEGVVTNVTNF-GAFVDIGVHQDGLVHISSL 684
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
D + H +K G V V+++ + D R R + MR
Sbjct: 685 TDKFITDPHTVVKAGDVVKVKVM-EVDVERRRIGLSMRL 722
>gi|28572628|ref|NP_789408.1| 30S ribosomal protein S1 [Tropheryma whipplei TW08/27]
gi|28410760|emb|CAD67146.1| 30s ribosomal protein S1 [Tropheryma whipplei TW08/27]
Length = 473
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 272 YYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEIL 328
+ GQ+ +G V+++ + GAFVD+GG+ DG V I W + +KVG V VEIL
Sbjct: 199 LHKGQVRKGTVSSIVSF-GAFVDLGGI-DGLVHISEISWKHVTQPSEVLKVGEEVTVEIL 256
Query: 329 AKRDPYRFRFPIEMRFVQ 346
+ D R R + +R Q
Sbjct: 257 -EVDSERHRVSLSLRATQ 273
>gi|170724124|ref|YP_001751812.1| RNA-binding S1 domain-containing protein [Pseudomonas putida W619]
gi|169762127|gb|ACA75443.1| RNA binding S1 domain protein [Pseudomonas putida W619]
Length = 774
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ +L PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTATFQDGVEDLKDLEPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFVKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|187929004|ref|YP_001899491.1| RNA binding S1 domain-containing protein [Ralstonia pickettii 12J]
gi|187725894|gb|ACD27059.1| RNA binding S1 domain protein [Ralstonia pickettii 12J]
Length = 777
Score = 44.3 bits (103), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ ++ PG + EG VT V + GAF+DIG DG V +
Sbjct: 634 PGRDPRPEFKTATFQDGVEDIKDLQPGMVLEGVVTNVAAF-GAFIDIGVHQDGLVHVSAL 692
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++R +K G V V+++ + D R R + MR
Sbjct: 693 STKFVRDPHEVVKPGQIVKVKVM-EVDVKRNRIGLTMRL 730
>gi|104779512|ref|YP_606010.1| RNA-binding transcription accessory protein [Pseudomonas
entomophila L48]
gi|95108499|emb|CAK13193.1| putative RNA-binding transcription accessory protein [Pseudomonas
entomophila L48]
Length = 775
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ +L PG I EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTATFQDGVEDLKDLEPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V+++ + D R R + MR
Sbjct: 682 SEKFVKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 719
>gi|299066633|emb|CBJ37826.1| transcriptional accessory protein [Ralstonia solanacearum CMR15]
Length = 802
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ ++ PG + EG VT V + GAF+DIG DG V +
Sbjct: 661 PGRDPRPEFKTATFQDGVEDIKDLQPGMVLEGVVTNVAAF-GAFIDIGVHQDGLVHVSAL 719
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++R +K G V V+++ + D R R + MR
Sbjct: 720 STKFVRDPHEVVKPGQIVKVKVM-EVDVKRNRIGLTMRL 757
>gi|167037582|ref|YP_001665160.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|166856416|gb|ABY94824.1| RNA binding S1 domain protein [Thermoanaerobacter pseudethanolicus
ATCC 33223]
Length = 365
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 250 DYYPGRRKRGKDYEEGMYE--------LPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDG 301
+Y PG++ G E E L G I EGKV + + +GAFVDIGG +DG
Sbjct: 156 EYIPGKKIVGSQKEVLKLEREKVKKALLSNLKEGDIVEGKVKNI-IDKGAFVDIGG-FDG 213
Query: 302 WVPIKGNDWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPN 348
++P+ W I R + +G V V IL D + + + +R V P+
Sbjct: 214 FIPLSEISWERIKNPREVLGIGDKVSVYIL-NVDEKKEKITLSLRKVLPD 262
>gi|357010264|ref|ZP_09075263.1| RNA binding S1 domain-containing protein [Paenibacillus elgii B69]
Length = 405
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 23/140 (16%)
Query: 227 KQYNQWVAANKDRLEEESYKYDQDYYPGRRKRGKDYEEGMYELPFYYPGQICEGKVTTVH 286
++ N+ + + KD L+EE Q+ + GQ G V +
Sbjct: 173 REKNKVILSQKDVLDEELETKKQET-----------------ISKLSVGQELMGTVQRLT 215
Query: 287 LYQGAFVDIGGVYDGWVPIKGNDWYWIRHH---IKVGMHVIVEILAKRDPYRFRFPIEMR 343
+ GAFVDIGGV DG V I W+ + H +K G V V++L K DP R + ++
Sbjct: 216 QF-GAFVDIGGV-DGLVHISEMAWHHVEHASEVVKEGDQVRVQVL-KLDPANERISLSIK 272
Query: 344 FVQPNIDHLIFNRFDFAPIF 363
QP + N+ + I
Sbjct: 273 ATQPGPWESVKNKINIGDIV 292
>gi|295696379|ref|YP_003589617.1| RNA binding S1 domain-containing protein [Kyrpidia tusciae DSM
2912]
gi|295411981|gb|ADG06473.1| RNA binding S1 domain protein [Kyrpidia tusciae DSM 2912]
Length = 383
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 274 PGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAK 330
PG I GKV + + GAFVD+GGV DG V I W+ + H +K G V V++L K
Sbjct: 188 PGDIITGKVQRLTNF-GAFVDVGGV-DGLVHISELAWHRVEHPSEVVKEGDEVTVKVL-K 244
Query: 331 RDPYRFRFPIEMRFVQPN 348
DP R R + ++ P
Sbjct: 245 VDPERERVSLSIKEANPG 262
>gi|300691366|ref|YP_003752361.1| transcriptional accessory protein [Ralstonia solanacearum PSI07]
gi|299078426|emb|CBJ51078.1| transcriptional accessory protein [Ralstonia solanacearum PSI07]
Length = 779
Score = 43.9 bits (102), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ ++ PG + EG VT V + GAF+DIG DG V +
Sbjct: 638 PGRDPRPEFKTATFQDGVEDIKDLQPGMVLEGVVTNVAAF-GAFIDIGVHQDGLVHVSAL 696
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++R +K G V V+++ + D R R + MR
Sbjct: 697 STKFVRDPHEVVKPGQVVKVKVM-EVDVKRNRIGLTMRL 734
>gi|344174599|emb|CCA86400.1| transcriptional accessory protein [Ralstonia syzygii R24]
Length = 779
Score = 43.9 bits (102), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ ++ PG + EG VT V + GAF+DIG DG V +
Sbjct: 638 PGRDPRPEFKTATFQDGVEDIKDLQPGMVLEGVVTNVAAF-GAFIDIGVHQDGLVHVSAL 696
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++R +K G V V+++ + D R R + MR
Sbjct: 697 STKFVRDPHEVVKPGQVVKVKVM-EVDVKRNRIGLTMRL 734
>gi|320115997|ref|YP_004186156.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|319929088|gb|ADV79773.1| RNA binding S1 domain protein [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 367
Score = 43.9 bits (102), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 250 DYYPGRRKRGKDYEEGMYE--------LPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDG 301
+Y PG++ G E E L G I EGKV + + +GAFVDIGG +DG
Sbjct: 158 EYIPGKKIVGSQKEVLKLEREKVKKALLSNLKEGDIVEGKVKNI-IDKGAFVDIGG-FDG 215
Query: 302 WVPIKGNDWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPN 348
++P+ W I R + +G V V IL D + + + +R V P+
Sbjct: 216 FIPLSEISWERIKNPREVLGIGDKVSVYIL-NVDEKKEKITLSLRKVLPD 264
>gi|17546342|ref|NP_519744.1| transcription accessory protein [Ralstonia solanacearum GMI1000]
gi|17428639|emb|CAD15325.1| conserved hypothetical protein [Ralstonia solanacearum GMI1000]
Length = 779
Score = 43.9 bits (102), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ ++ PG + EG VT V + GAF+DIG DG V +
Sbjct: 638 PGRDPRPEFKTATFQDGVEDIKDLQPGMVLEGVVTNVAAF-GAFIDIGVHQDGLVHVSAL 696
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++R +K G V V+++ + D R R + MR
Sbjct: 697 STKFVRDPHEVVKPGQIVKVKVM-EVDVKRNRIGLTMRL 734
>gi|452747048|ref|ZP_21946853.1| S1 RNA-binding domain-containing protein [Pseudomonas stutzeri
NF13]
gi|452009066|gb|EME01294.1| S1 RNA-binding domain-containing protein [Pseudomonas stutzeri
NF13]
Length = 771
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++EG+ +L PG + EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQEGVEKLADLEPGMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 682 SEKFVKDPYEVVKAGDIVKVKVM-EVDIPRQRVGLSMRM 719
>gi|344167738|emb|CCA79979.1| transcriptional accessory protein [blood disease bacterium R229]
Length = 779
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ ++ PG + EG VT V + GAF+DIG DG V +
Sbjct: 638 PGRDPRPEFKTATFQDGVEDIKDLQPGMVLEGVVTNVAAF-GAFIDIGVHQDGLVHVSAL 696
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++R +K G V V+++ + D R R + MR
Sbjct: 697 STKFVRDPHEVVKPGQIVKVKVM-EVDVKRNRIGLTMRL 734
>gi|116053349|ref|YP_793673.1| hypothetical protein PA14_68710 [Pseudomonas aeruginosa UCBPP-PA14]
gi|421177462|ref|ZP_15635114.1| hypothetical protein PACI27_5679 [Pseudomonas aeruginosa CI27]
gi|115588570|gb|ABJ14585.1| putative transcriptional accessory protein [Pseudomonas aeruginosa
UCBPP-PA14]
gi|404529584|gb|EKA39619.1| hypothetical protein PACI27_5679 [Pseudomonas aeruginosa CI27]
Length = 779
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++EG+ L PG + EG VT V + GAFVDIG DG V I
Sbjct: 629 PGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 687
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 688 SEKFVKDPYEVVKAGDIVKVKVM-EVDIPRNRVGLSMRM 725
>gi|218894303|ref|YP_002443173.1| putative transcriptional accessory protein [Pseudomonas aeruginosa
LESB58]
gi|218774532|emb|CAW30349.1| putative transcriptional accessory protein [Pseudomonas aeruginosa
LESB58]
Length = 779
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++EG+ L PG + EG VT V + GAFVDIG DG V I
Sbjct: 629 PGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 687
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 688 SEKFVKDPYEVVKAGDIVKVKVM-EVDIPRNRVGLSMRM 725
>gi|122921517|pdb|2OCE|A Chain A, Crystal Structure Of Tex Family Protein Pa5201 From
Pseudomonas Aeruginosa
Length = 780
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++EG+ L PG + EG VT V + GAFVDIG DG V I
Sbjct: 630 PGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 688
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 689 SEKFVKDPYEVVKAGDIVKVKVM-EVDIPRNRVGLSMRM 726
>gi|323356451|ref|YP_004222847.1| 30S ribosomal protein S1 [Microbacterium testaceum StLB037]
gi|323272822|dbj|BAJ72967.1| 30S ribosomal protein S1 [Microbacterium testaceum StLB037]
Length = 484
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 272 YYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHH---IKVGMHVIVEIL 328
+ GQ+ +G V+++ + GAFVD+GGV DG V + W I H ++VG V VEIL
Sbjct: 208 LHKGQVRKGTVSSIVNF-GAFVDLGGV-DGLVHVSELSWKHIEHASEVVEVGQEVTVEIL 265
Query: 329 AKRDPYRFRFPIEMRFVQ 346
+ D R R + ++ Q
Sbjct: 266 -EVDLDRERVSLSLKATQ 282
>gi|420140454|ref|ZP_14648214.1| hypothetical protein PACIG1_3737 [Pseudomonas aeruginosa CIG1]
gi|421161488|ref|ZP_15620440.1| hypothetical protein PABE173_4020 [Pseudomonas aeruginosa ATCC
25324]
gi|403246786|gb|EJY60482.1| hypothetical protein PACIG1_3737 [Pseudomonas aeruginosa CIG1]
gi|404539861|gb|EKA49306.1| hypothetical protein PABE173_4020 [Pseudomonas aeruginosa ATCC
25324]
Length = 779
Score = 43.5 bits (101), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++EG+ L PG + EG VT V + GAFVDIG DG V I
Sbjct: 629 PGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 687
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 688 SEKFVKDPYEVVKAGDIVKVKVM-EVDIPRNRVGLSMRM 725
>gi|397688785|ref|YP_006526104.1| S1 RNA-binding domain-containing protein [Pseudomonas stutzeri DSM
10701]
gi|395810341|gb|AFN79746.1| S1 RNA-binding domain-containing protein [Pseudomonas stutzeri DSM
10701]
Length = 770
Score = 43.5 bits (101), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++EG+ +L PG + EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQEGVEKLSDLEPGMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 682 SEKFVKDPYEVVKAGDIVKVKVM-EVDIPRNRVGLSMRM 719
>gi|392423043|ref|YP_006459647.1| S1 RNA-binding domain-containing protein [Pseudomonas stutzeri CCUG
29243]
gi|390985231|gb|AFM35224.1| S1 RNA-binding domain-containing protein [Pseudomonas stutzeri CCUG
29243]
Length = 772
Score = 43.5 bits (101), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++EG+ +L PG + EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQEGVEKLSDLEPGMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 682 SEKFVKDPYEVVKAGDIVKVKVM-EVDIPRQRVGLSMRM 719
>gi|254238102|ref|ZP_04931425.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|392986881|ref|YP_006485468.1| hypothetical protein PADK2_27525 [Pseudomonas aeruginosa DK2]
gi|419756265|ref|ZP_14282616.1| hypothetical protein CF510_25014 [Pseudomonas aeruginosa
PADK2_CF510]
gi|126170033|gb|EAZ55544.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|384397350|gb|EIE43762.1| hypothetical protein CF510_25014 [Pseudomonas aeruginosa
PADK2_CF510]
gi|392322386|gb|AFM67766.1| hypothetical protein PADK2_27525 [Pseudomonas aeruginosa DK2]
Length = 779
Score = 43.5 bits (101), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++EG+ L PG + EG VT V + GAFVDIG DG V I
Sbjct: 629 PGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 687
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 688 SEKFVKDPYEVVKAGDIVKVKVM-EVDIPRNRVGLSMRM 725
>gi|15600394|ref|NP_253888.1| hypothetical protein PA5201 [Pseudomonas aeruginosa PAO1]
gi|416856490|ref|ZP_11912086.1| hypothetical protein PA13_09539 [Pseudomonas aeruginosa 138244]
gi|418586602|ref|ZP_13150643.1| hypothetical protein O1O_18014 [Pseudomonas aeruginosa MPAO1/P1]
gi|418589936|ref|ZP_13153854.1| hypothetical protein O1Q_05050 [Pseudomonas aeruginosa MPAO1/P2]
gi|421183288|ref|ZP_15640750.1| hypothetical protein PAE2_5237 [Pseudomonas aeruginosa E2]
gi|421519770|ref|ZP_15966441.1| hypothetical protein A161_25990 [Pseudomonas aeruginosa PAO579]
gi|424943998|ref|ZP_18359761.1| putative transcriptional accessory protein [Pseudomonas aeruginosa
NCMG1179]
gi|9951507|gb|AAG08586.1|AE004933_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|334841907|gb|EGM20526.1| hypothetical protein PA13_09539 [Pseudomonas aeruginosa 138244]
gi|346060444|dbj|GAA20327.1| putative transcriptional accessory protein [Pseudomonas aeruginosa
NCMG1179]
gi|375042967|gb|EHS35603.1| hypothetical protein O1O_18014 [Pseudomonas aeruginosa MPAO1/P1]
gi|375051274|gb|EHS43744.1| hypothetical protein O1Q_05050 [Pseudomonas aeruginosa MPAO1/P2]
gi|404345689|gb|EJZ72041.1| hypothetical protein A161_25990 [Pseudomonas aeruginosa PAO579]
gi|404540524|gb|EKA49927.1| hypothetical protein PAE2_5237 [Pseudomonas aeruginosa E2]
gi|453046714|gb|EME94430.1| hypothetical protein H123_10592 [Pseudomonas aeruginosa PA21_ST175]
Length = 779
Score = 43.5 bits (101), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++EG+ L PG + EG VT V + GAFVDIG DG V I
Sbjct: 629 PGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 687
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 688 SEKFVKDPYEVVKAGDIVKVKVM-EVDIPRNRVGLSMRM 725
>gi|107104303|ref|ZP_01368221.1| hypothetical protein PaerPA_01005377 [Pseudomonas aeruginosa PACS2]
gi|254243916|ref|ZP_04937238.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|451986960|ref|ZP_21935122.1| Transcription accessory protein (S1 RNA-binding domain)
[Pseudomonas aeruginosa 18A]
gi|126197294|gb|EAZ61357.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|451755275|emb|CCQ87645.1| Transcription accessory protein (S1 RNA-binding domain)
[Pseudomonas aeruginosa 18A]
Length = 779
Score = 43.5 bits (101), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++EG+ L PG + EG VT V + GAFVDIG DG V I
Sbjct: 629 PGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 687
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 688 SEKFVKDPYEVVKAGDIVKVKVM-EVDIPRNRVGLSMRM 725
>gi|296392058|ref|ZP_06881533.1| putative transcriptional accessory protein [Pseudomonas aeruginosa
PAb1]
Length = 779
Score = 43.5 bits (101), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++EG+ L PG + EG VT V + GAFVDIG DG V I
Sbjct: 629 PGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 687
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 688 SEKFVKDPYEVVKAGDIVKVKVM-EVDIPRNRVGLSMRM 725
>gi|336313509|ref|ZP_08568449.1| transcription accessory protein (S1 RNA-binding domain) [Shewanella
sp. HN-41]
gi|335862847|gb|EGM68028.1| transcription accessory protein (S1 RNA-binding domain) [Shewanella
sp. HN-41]
Length = 791
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG- 307
PGR RG+ +++G+ EL P I EG VT V + GAFVDIG DG V I
Sbjct: 634 PGRDPRGEFKTAKFKDGVEELKDLKPEMILEGVVTNVTNF-GAFVDIGVHQDGLVHISSL 692
Query: 308 NDWYWIRHH--IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
D + H +K G V V+++ + D R R + MR
Sbjct: 693 TDKFISDPHTVVKAGDVVKVKVM-EVDVERRRIGLSMRL 730
>gi|322434828|ref|YP_004217040.1| Tex-like protein [Granulicella tundricola MP5ACTX9]
gi|321162555|gb|ADW68260.1| Tex-like protein protein [Granulicella tundricola MP5ACTX9]
Length = 765
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R K + EG+ EL P + EG VT V + GAFVDIG DG V I
Sbjct: 619 PGRDPRDKFVAPSFHEGVRELADVQPDMVLEGVVTNVTKF-GAFVDIGVHQDGLVHISEL 677
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPNI 349
+++ +KVG V V++++ D R + M+ + +
Sbjct: 678 SNRFLKDPNEAVKVGQIVKVKVISA-DMASKRIALSMKALMSGV 720
>gi|178847555|pdb|3BZC|A Chain A, Crystal Structure Of The Tex Protein From Pseudomonas
Aeruginosa, Crystal Form I
gi|178847556|pdb|3BZK|A Chain A, Crystal Structure Of The Tex Protein From Pseudomonas
Aeruginosa, Crystal Form 2
Length = 785
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++EG+ L PG + EG VT V + GAFVDIG DG V I
Sbjct: 629 PGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 687
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 688 SEKFVKDPYEVVKAGDIVKVKVM-EVDIPRNRVGLSMRM 725
>gi|88856205|ref|ZP_01130865.1| 30S ribosomal protein S1 [marine actinobacterium PHSC20C1]
gi|88814524|gb|EAR24386.1| 30S ribosomal protein S1 [marine actinobacterium PHSC20C1]
Length = 488
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHH---IKVGMHVIVEILAKR 331
GQ+ +G V+++ + GAFVD+GGV DG V + W I H ++VG V VEIL +
Sbjct: 211 GQVRKGVVSSIVNF-GAFVDLGGV-DGLVHVSELSWKHIEHASEVVEVGQEVTVEIL-EV 267
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 268 DLERERVSLSLKATQ 282
>gi|431929066|ref|YP_007242100.1| transcriptional accessory protein [Pseudomonas stutzeri RCH2]
gi|431827353|gb|AGA88470.1| transcriptional accessory protein [Pseudomonas stutzeri RCH2]
Length = 777
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++EG+ +L PG + EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQEGVEKLSDLEPGMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 682 SEKFVKDPYEVVKAGDIVKVKVM-EVDIPRQRVGLSMRM 719
>gi|421156734|ref|ZP_15616173.1| hypothetical protein PABE171_5558 [Pseudomonas aeruginosa ATCC
14886]
gi|404518666|gb|EKA29484.1| hypothetical protein PABE171_5558 [Pseudomonas aeruginosa ATCC
14886]
Length = 779
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++EG+ L PG + EG VT V + GAFVDIG DG V I
Sbjct: 629 PGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 687
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 688 SEKFVKDPYEVVKAGDIVKVKVM-EVDIPRNRVGLSMRM 725
>gi|395446590|ref|YP_006386843.1| S1 RNA-binding domain-containing protein [Pseudomonas putida ND6]
gi|388560587|gb|AFK69728.1| S1 RNA-binding domain-containing protein [Pseudomonas putida ND6]
Length = 847
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ +L PG I EG VT V + GAFVDIG DG V I
Sbjct: 696 PGRDPRPEFKTATFQDGVEDLKDLEPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 754
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V+++ + D R R + MR
Sbjct: 755 SEKFVKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 792
>gi|339448321|ref|ZP_08651877.1| 30S ribosomal protein S1 [Lactobacillus fructivorans KCTC 3543]
Length = 406
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 269 LPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIV 325
+ PG I EGKV + + GAFVD+GG+ DG V + + + +KVG V V
Sbjct: 198 MSTLKPGDIVEGKVARLTNF-GAFVDLGGI-DGLVHVSEISYEHVNKPSDVLKVGEEVKV 255
Query: 326 EILAKRDPYRFRFPIEMRFVQP 347
++L+ DP R R + ++ QP
Sbjct: 256 KVLS-VDPDRNRISLSIKQTQP 276
>gi|355643485|ref|ZP_09053336.1| hypothetical protein HMPREF1030_02422 [Pseudomonas sp. 2_1_26]
gi|386068852|ref|YP_005984156.1| hypothetical protein NCGM2_5961 [Pseudomonas aeruginosa NCGM2.S1]
gi|416875819|ref|ZP_11918910.1| hypothetical protein PA15_12545 [Pseudomonas aeruginosa 152504]
gi|334841592|gb|EGM20218.1| hypothetical protein PA15_12545 [Pseudomonas aeruginosa 152504]
gi|348037411|dbj|BAK92771.1| hypothetical protein NCGM2_5961 [Pseudomonas aeruginosa NCGM2.S1]
gi|354829689|gb|EHF13752.1| hypothetical protein HMPREF1030_02422 [Pseudomonas sp. 2_1_26]
Length = 779
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++EG+ L PG + EG VT V + GAFVDIG DG V I
Sbjct: 629 PGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 687
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 688 SEKFVKDPYEVVKAGDIVKVKVM-EVDIPRNRVGLSMRM 725
>gi|152988034|ref|YP_001351262.1| hypothetical protein PSPA7_5945 [Pseudomonas aeruginosa PA7]
gi|150963192|gb|ABR85217.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
Length = 779
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++EG+ L PG + EG VT V + GAFVDIG DG V I
Sbjct: 629 PGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 687
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 688 SEKFVKDPYEVVKAGDIVKVKVM-EVDIPRNRVGLSMRM 725
>gi|400974618|ref|ZP_10801849.1| 30S ribosomal protein S1 [Salinibacterium sp. PAMC 21357]
Length = 488
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHH---IKVGMHVIVEILAKR 331
GQ+ +G V+++ + GAFVD+GGV DG V + W I H ++VG V VEIL +
Sbjct: 211 GQVRKGVVSSIVNF-GAFVDLGGV-DGLVHVSELSWKHIEHASEVVEVGQEVTVEIL-EV 267
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 268 DLERERVSLSLKATQ 282
>gi|421733456|ref|ZP_16172561.1| 30S ribosomal protein S1 [Bifidobacterium bifidum LMG 13195]
gi|407078595|gb|EKE51396.1| 30S ribosomal protein S1 [Bifidobacterium bifidum LMG 13195]
Length = 490
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|326391105|ref|ZP_08212652.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus JW
200]
gi|325992890|gb|EGD51335.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus JW
200]
Length = 367
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 250 DYYPGRRKRGKDYEEGMYE--------LPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDG 301
+Y PG++ G E E L G I EGKV + + +GAFVDIGG +DG
Sbjct: 158 EYIPGKKIVGSQKEVLKLEREKVKKALLSNLKEGDIVEGKVKNI-IDKGAFVDIGG-FDG 215
Query: 302 WVPIKGNDWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPN 348
++P+ W I R + +G V V IL D + + + +R V P+
Sbjct: 216 FIPLSEISWERIKNPREVLGIGDKVSVYIL-NVDEKKEKITLSLRKVLPD 264
>gi|229817852|ref|ZP_04448134.1| hypothetical protein BIFANG_03138 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229784752|gb|EEP20866.1| hypothetical protein BIFANG_03138 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 490
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|421171077|ref|ZP_15628972.1| hypothetical protein PABE177_5729 [Pseudomonas aeruginosa ATCC
700888]
gi|404521448|gb|EKA32045.1| hypothetical protein PABE177_5729 [Pseudomonas aeruginosa ATCC
700888]
Length = 779
Score = 43.5 bits (101), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++EG+ L PG + EG VT V + GAFVDIG DG V I
Sbjct: 629 PGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 687
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 688 SEKFVKDPYEVVKAGDIVKVKVM-EVDIPRNRVGLSMRM 725
>gi|83745880|ref|ZP_00942937.1| TRANSCRIPTION ACCESSORY PROTEIN (S1 RNA binding domain) [Ralstonia
solanacearum UW551]
gi|83727570|gb|EAP74691.1| TRANSCRIPTION ACCESSORY PROTEIN (S1 RNA binding domain) [Ralstonia
solanacearum UW551]
Length = 1257
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ ++ PG + EG VT V + GAF+DIG DG V +
Sbjct: 1115 PGRDPRPEFKTATFQDGVEDIKHLQPGMVLEGVVTNVAAF-GAFIDIGVHQDGLVHVSAL 1173
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++R +K G V V+++ + D R R + MR
Sbjct: 1174 STKFVRDPHEVVKPGQIVKVKVM-EVDVKRNRIGLTMRL 1211
>gi|452881526|ref|ZP_21958265.1| hypothetical protein G039_36484 [Pseudomonas aeruginosa VRFPA01]
gi|452182279|gb|EME09297.1| hypothetical protein G039_36484 [Pseudomonas aeruginosa VRFPA01]
Length = 752
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++EG+ L PG + EG VT V + GAFVDIG DG V I
Sbjct: 629 PGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 687
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 688 SEKFVKDPYEVVKAGDIVKVKVM-EVDIPRNRVGLSMRM 725
>gi|310287294|ref|YP_003938552.1| 30S ribosomal protein S1 [Bifidobacterium bifidum S17]
gi|309251230|gb|ADO52978.1| SSU ribosomal protein S1P [Bifidobacterium bifidum S17]
Length = 490
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|225351875|ref|ZP_03742898.1| hypothetical protein BIFPSEUDO_03477 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|225157122|gb|EEG70461.1| hypothetical protein BIFPSEUDO_03477 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 491
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|311064142|ref|YP_003970867.1| 30S ribosomal protein S1 [Bifidobacterium bifidum PRL2010]
gi|313139998|ref|ZP_07802191.1| 30S ribosomal protein S1 [Bifidobacterium bifidum NCIMB 41171]
gi|390936652|ref|YP_006394211.1| 30S ribosomal protein S1 [Bifidobacterium bifidum BGN4]
gi|310866461|gb|ADP35830.1| RpsA SSU ribosomal protein S1P [Bifidobacterium bifidum PRL2010]
gi|313132508|gb|EFR50125.1| 30S ribosomal protein S1 [Bifidobacterium bifidum NCIMB 41171]
gi|389890265|gb|AFL04332.1| 30S ribosomal protein S1 [Bifidobacterium bifidum BGN4]
Length = 490
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|218247633|ref|YP_002373004.1| RNA-binding S1 domain-containing protein [Cyanothece sp. PCC 8801]
gi|257061032|ref|YP_003138920.1| RNA binding S1 domain-containing protein [Cyanothece sp. PCC 8802]
gi|218168111|gb|ACK66848.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8801]
gi|256591198|gb|ACV02085.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8802]
Length = 719
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + ++EG+ E+ PG I EG +T V + GAFVDIG DG V I
Sbjct: 620 PGRDPREEFKYATFKEGITEIADLTPGMILEGIITNVVNF-GAFVDIGVHQDGLVHISQL 678
Query: 309 DWYWIR 314
Y+I+
Sbjct: 679 ADYFIK 684
>gi|119025692|ref|YP_909537.1| 30S ribosomal protein S1 [Bifidobacterium adolescentis ATCC 15703]
gi|154487492|ref|ZP_02028899.1| hypothetical protein BIFADO_01347 [Bifidobacterium adolescentis
L2-32]
gi|118765276|dbj|BAF39455.1| 30S ribosomal protein S1 [Bifidobacterium adolescentis ATCC 15703]
gi|154084010|gb|EDN83055.1| putative ribosomal protein S1 [Bifidobacterium adolescentis L2-32]
Length = 490
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|294790747|ref|ZP_06755905.1| ribosomal protein S1 [Scardovia inopinata F0304]
gi|294458644|gb|EFG26997.1| ribosomal protein S1 [Scardovia inopinata F0304]
Length = 494
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG ++++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGTISSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKSTQ 280
>gi|261338679|ref|ZP_05966563.1| ribosomal protein S1 [Bifidobacterium gallicum DSM 20093]
gi|270276304|gb|EFA22158.1| ribosomal protein S1 [Bifidobacterium gallicum DSM 20093]
Length = 495
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|421735863|ref|ZP_16174741.1| 30S ribosomal protein S1 [Bifidobacterium bifidum IPLA 20015]
gi|407296849|gb|EKF16353.1| 30S ribosomal protein S1 [Bifidobacterium bifidum IPLA 20015]
Length = 490
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|171743205|ref|ZP_02919012.1| hypothetical protein BIFDEN_02333 [Bifidobacterium dentium ATCC
27678]
gi|283455814|ref|YP_003360378.1| 30S ribosomal protein S1 [Bifidobacterium dentium Bd1]
gi|306823050|ref|ZP_07456426.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27679]
gi|309801254|ref|ZP_07695383.1| putative ribosomal protein S1 [Bifidobacterium dentium JCVIHMP022]
gi|171278819|gb|EDT46480.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27678]
gi|283102448|gb|ADB09554.1| 30S ribosomal protein S1 [Bifidobacterium dentium Bd1]
gi|304553682|gb|EFM41593.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27679]
gi|308222143|gb|EFO78426.1| putative ribosomal protein S1 [Bifidobacterium dentium JCVIHMP022]
Length = 490
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|26986988|ref|NP_742413.1| S1 RNA-binding domain-containing protein [Pseudomonas putida
KT2440]
gi|24981603|gb|AAN65877.1|AE016215_12 S1 RNA binding domain protein [Pseudomonas putida KT2440]
Length = 861
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++G+ +L PG I EG VT V + GAFVDIG DG V I
Sbjct: 710 PGRDPRPEFKTATFQDGVEDLKDLEPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 768
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V+++ + D R R + MR
Sbjct: 769 SEKFVKDPREAVKAGDVVKVKVM-EVDIPRKRVGLSMRM 806
>gi|212716121|ref|ZP_03324249.1| hypothetical protein BIFCAT_01036 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212661488|gb|EEB22063.1| hypothetical protein BIFCAT_01036 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 491
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|443473796|ref|ZP_21063817.1| Transcription accessory protein [Pseudomonas pseudoalcaligenes
KF707]
gi|442904731|gb|ELS29646.1| Transcription accessory protein [Pseudomonas pseudoalcaligenes
KF707]
Length = 770
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++EG+ L PG + EG VT V + GAFVDIG DG V I
Sbjct: 623 PGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 681
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 682 SEKFVKDPYEVVKAGDIVKVKVM-EVDIPRNRVGLSMRM 719
>gi|357406716|ref|YP_004918640.1| transcription accessory protein TEX [Methylomicrobium alcaliphilum
20Z]
gi|351719381|emb|CCE25057.1| putative transcription accessory protein TEX [Methylomicrobium
alcaliphilum 20Z]
Length = 758
Score = 43.1 bits (100), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R Y+EG+ ++ PG + EG VT V + GAFVDIG DG V I
Sbjct: 622 PGRDPRPEFKSVQYKEGVEKITDLKPGMMLEGVVTNVANF-GAFVDIGVHQDGLVHISHL 680
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMR 343
++ R +K G V V++L + D R R + M+
Sbjct: 681 ADVFVKDPRDVVKTGDMVKVKVL-EIDVPRQRISLTMK 717
>gi|386061377|ref|YP_005977899.1| putative transcriptional accessory protein [Pseudomonas aeruginosa
M18]
gi|347307683|gb|AEO77797.1| putative transcriptional accessory protein [Pseudomonas aeruginosa
M18]
Length = 913
Score = 43.1 bits (100), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R +++EG+ L PG + EG VT V + GAFVDIG DG V I
Sbjct: 629 PGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 687
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+++ +K G V V+++ + D R R + MR
Sbjct: 688 SEKFVKDPYEVVKAGDIVKVKVM-EVDIPRNRVGLSMRM 725
>gi|381397179|ref|ZP_09922592.1| RNA binding S1 domain protein [Microbacterium laevaniformans OR221]
gi|380775496|gb|EIC08787.1| RNA binding S1 domain protein [Microbacterium laevaniformans OR221]
Length = 483
Score = 43.1 bits (100), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 272 YYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHH---IKVGMHVIVEIL 328
+ GQ+ +G V+++ + GAFVD+GGV DG V + W I H ++VG V VEIL
Sbjct: 208 LHKGQVRKGVVSSIVNF-GAFVDLGGV-DGLVHVSELSWKHIEHASEVVEVGQEVTVEIL 265
Query: 329 AKRDPYRFRFPIEMRFVQ 346
+ D R R + ++ Q
Sbjct: 266 -EVDLDRERVSLSLKATQ 282
>gi|427391803|ref|ZP_18886027.1| 30S ribosomal protein S1 [Actinobaculum massiliae ACS-171-V-Col2]
gi|425731770|gb|EKU94583.1| 30S ribosomal protein S1 [Actinobaculum massiliae ACS-171-V-Col2]
Length = 497
Score = 43.1 bits (100), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 269 LPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIV 325
L + GQI EG V+++ + GAFVD+GGV DG V + W I H + VG V V
Sbjct: 206 LAGLHKGQIREGVVSSIVNF-GAFVDLGGV-DGLVHVSELSWKHIDHPSEVVTVGQKVNV 263
Query: 326 EILAKRDPYRFRFPIEMRFVQ 346
E+L D R R + ++ Q
Sbjct: 264 EVL-DVDLDRERVSLSLKATQ 283
>gi|23465561|ref|NP_696164.1| 30S ribosomal protein S1 [Bifidobacterium longum NCC2705]
gi|189439608|ref|YP_001954689.1| 30S ribosomal protein S1 [Bifidobacterium longum DJO10A]
gi|23326226|gb|AAN24800.1| 30S ribosomal protein S1 [Bifidobacterium longum NCC2705]
gi|189428043|gb|ACD98191.1| Ribosomal protein S1 [Bifidobacterium longum DJO10A]
Length = 491
Score = 43.1 bits (100), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|385653141|ref|ZP_10047694.1| 30S ribosomal protein S1 [Leucobacter chromiiresistens JG 31]
Length = 481
Score = 43.1 bits (100), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 274 PGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHH---IKVGMHVIVEILA 329
PGQ+ +G ++++ + GAFVD+GGV DG V + W I H ++VG V VE+L+
Sbjct: 208 PGQVRKGVISSIVNF-GAFVDLGGV-DGLVHVSELSWKHIEHASDVVEVGQEVTVEVLS 264
>gi|333370713|ref|ZP_08462697.1| 30S ribosomal protein S1 [Desmospora sp. 8437]
gi|332977266|gb|EGK14058.1| 30S ribosomal protein S1 [Desmospora sp. 8437]
Length = 391
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 23/122 (18%)
Query: 230 NQWVAANKDRLEEESYKYDQDYYPGRRKRGKDYEEGMYELPFYYPGQICEGKVTTVHLYQ 289
N+ + + K L+EE+ + Q+ G PGQ+ EG V + +
Sbjct: 172 NKLILSRKAVLDEEADQRKQETLAG-----------------LQPGQVMEGTVQRLTDF- 213
Query: 290 GAFVDIGGVYDGWVPIKGNDWYWIRHHIKV---GMHVIVEILAKRDPYRFRFPIEMRFVQ 346
GAFVDIGGV DG V + W + H +V G V V++L K D R + ++ Q
Sbjct: 214 GAFVDIGGV-DGLVHVSELAWNRVEHPSEVLSEGDQVQVKVL-KVDQQNERISLSIKETQ 271
Query: 347 PN 348
P
Sbjct: 272 PG 273
>gi|415726676|ref|ZP_11470947.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Dmash]
gi|388062902|gb|EIK85501.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Dmash]
Length = 499
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|296453875|ref|YP_003661018.1| RNA-binding S1 domain-containing protein [Bifidobacterium longum
subsp. longum JDM301]
gi|384199820|ref|YP_005585563.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
gi|296183306|gb|ADH00188.1| RNA binding S1 domain protein [Bifidobacterium longum subsp. longum
JDM301]
gi|320458772|dbj|BAJ69393.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
Length = 491
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|415728146|ref|ZP_11471719.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6119V5]
gi|388065284|gb|EIK87775.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6119V5]
Length = 500
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|415718164|ref|ZP_11467146.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1500E]
gi|388059993|gb|EIK82694.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1500E]
Length = 500
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|297243679|ref|ZP_06927610.1| ribosomal protein S1 [Gardnerella vaginalis AMD]
gi|415709775|ref|ZP_11463354.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6420B]
gi|296888430|gb|EFH27171.1| ribosomal protein S1 [Gardnerella vaginalis AMD]
gi|388055777|gb|EIK78662.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6420B]
Length = 500
Score = 42.7 bits (99), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|317481889|ref|ZP_07940916.1| S1 RNA binding domain-containing protein [Bifidobacterium sp.
12_1_47BFAA]
gi|316916680|gb|EFV38075.1| S1 RNA binding domain-containing protein [Bifidobacterium sp.
12_1_47BFAA]
Length = 491
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|227546158|ref|ZP_03976207.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum ATCC
55813]
gi|239621800|ref|ZP_04664831.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
CCUG 52486]
gi|322688831|ref|YP_004208565.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
157F]
gi|322690819|ref|YP_004220389.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum JCM
1217]
gi|384201809|ref|YP_005587556.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum KACC
91563]
gi|419846596|ref|ZP_14369831.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum
1-6B]
gi|419850464|ref|ZP_14373454.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 35B]
gi|419853759|ref|ZP_14376564.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum
2-2B]
gi|419855926|ref|ZP_14378671.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 44B]
gi|227213139|gb|EEI81011.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
ATCC 55813]
gi|239514991|gb|EEQ54858.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
CCUG 52486]
gi|291517108|emb|CBK70724.1| SSU ribosomal protein S1P [Bifidobacterium longum subsp. longum F8]
gi|320455675|dbj|BAJ66297.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum JCM
1217]
gi|320460167|dbj|BAJ70787.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
157F]
gi|338754816|gb|AEI97805.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum KACC
91563]
gi|386406831|gb|EIJ21825.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum
2-2B]
gi|386408991|gb|EIJ23869.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 35B]
gi|386413633|gb|EIJ28225.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum
1-6B]
gi|386414587|gb|EIJ29140.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 44B]
Length = 491
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|213692621|ref|YP_002323207.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
gi|213524082|gb|ACJ52829.1| RNA binding S1 domain protein [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
Length = 491
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|312133007|ref|YP_004000346.1| rpsa [Bifidobacterium longum subsp. longum BBMN68]
gi|311773993|gb|ADQ03481.1| RpsA [Bifidobacterium longum subsp. longum BBMN68]
Length = 491
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|294786795|ref|ZP_06752049.1| ribosomal protein S1 [Parascardovia denticolens F0305]
gi|315226424|ref|ZP_07868212.1| 30S ribosomal protein S1 [Parascardovia denticolens DSM 10105 = JCM
12538]
gi|420237201|ref|ZP_14741672.1| 30S ribosomal protein S1 [Parascardovia denticolens IPLA 20019]
gi|294485628|gb|EFG33262.1| ribosomal protein S1 [Parascardovia denticolens F0305]
gi|315120556|gb|EFT83688.1| 30S ribosomal protein S1 [Parascardovia denticolens DSM 10105 = JCM
12538]
gi|391879472|gb|EIT87978.1| 30S ribosomal protein S1 [Parascardovia denticolens IPLA 20019]
Length = 493
Score = 42.7 bits (99), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQ+ EG ++++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQVREGTISSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|433459808|ref|ZP_20417510.1| protein Tex, partial [Arthrobacter crystallopoietes BAB-32]
gi|432187441|gb|ELK44729.1| protein Tex, partial [Arthrobacter crystallopoietes BAB-32]
Length = 147
Score = 42.7 bits (99), Expect = 0.63, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG I EG VT V + GAFVD+G DG V I
Sbjct: 45 PGRDPRPTFTTASFSEGVEKISDLKPGMILEGTVTNVAAF-GAFVDVGVHQDGLVHISAM 103
Query: 309 DWYWIRHH---IKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ + +K G V V++L + DP R R + +R
Sbjct: 104 STKFVSNPHEVVKSGQVVKVKVL-EADPDRKRISLTLRL 141
>gi|415720875|ref|ZP_11468119.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Bmash]
gi|415724199|ref|ZP_11469798.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703C2mash]
gi|388061136|gb|EIK83793.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Bmash]
gi|388062890|gb|EIK85493.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703C2mash]
Length = 501
Score = 42.7 bits (99), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|308235374|ref|ZP_07666111.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14018 = JCM
11026]
gi|311114868|ref|YP_003986089.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14019]
gi|385801539|ref|YP_005837942.1| 30S ribosomal protein S1 [Gardnerella vaginalis HMP9231]
gi|415703249|ref|ZP_11459127.1| 30S ribosomal protein S1 [Gardnerella vaginalis 284V]
gi|415705124|ref|ZP_11460395.1| 30S ribosomal protein S1 [Gardnerella vaginalis 75712]
gi|415707058|ref|ZP_11461905.1| 30S ribosomal protein S1 [Gardnerella vaginalis 0288E]
gi|417556555|ref|ZP_12207612.1| 30S ribosomal protein S1 [Gardnerella vaginalis 315-A]
gi|310946362|gb|ADP39066.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14019]
gi|333392955|gb|AEF30873.1| 30S ribosomal protein S1 [Gardnerella vaginalis HMP9231]
gi|333602243|gb|EGL13673.1| 30S ribosomal protein S1 [Gardnerella vaginalis 315-A]
gi|388051846|gb|EIK74870.1| 30S ribosomal protein S1 [Gardnerella vaginalis 75712]
gi|388052709|gb|EIK75724.1| 30S ribosomal protein S1 [Gardnerella vaginalis 284V]
gi|388054058|gb|EIK77003.1| 30S ribosomal protein S1 [Gardnerella vaginalis 0288E]
Length = 500
Score = 42.7 bits (99), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|415712938|ref|ZP_11465049.1| 30S ribosomal protein S1 [Gardnerella vaginalis 55152]
gi|415713844|ref|ZP_11465297.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1400E]
gi|388056538|gb|EIK79402.1| 30S ribosomal protein S1 [Gardnerella vaginalis 55152]
gi|388059567|gb|EIK82298.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1400E]
Length = 500
Score = 42.7 bits (99), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|386867152|ref|YP_006280146.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. animalis
ATCC 25527]
gi|385701235|gb|AFI63183.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. animalis
ATCC 25527]
Length = 493
Score = 42.7 bits (99), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|291456496|ref|ZP_06595886.1| ribosomal protein S1 [Bifidobacterium breve DSM 20213 = JCM 1192]
gi|384197191|ref|YP_005582935.1| 30S ribosomal protein S1 [Bifidobacterium breve ACS-071-V-Sch8b]
gi|417942230|ref|ZP_12585505.1| Ribosomal protein S1 [Bifidobacterium breve CECT 7263]
gi|291381773|gb|EFE89291.1| ribosomal protein S1 [Bifidobacterium breve DSM 20213 = JCM 1192]
gi|333109696|gb|AEF26712.1| 30S ribosomal protein S1 [Bifidobacterium breve ACS-071-V-Sch8b]
gi|339478978|gb|ABE95439.1| SSU ribosomal protein S1P [Bifidobacterium breve UCC2003]
gi|376167330|gb|EHS86177.1| Ribosomal protein S1 [Bifidobacterium breve CECT 7263]
Length = 491
Score = 42.7 bits (99), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|283783083|ref|YP_003373837.1| 30S ribosomal protein S1 [Gardnerella vaginalis 409-05]
gi|283441435|gb|ADB13901.1| 30S ribosomal protein S1 [Gardnerella vaginalis 409-05]
Length = 500
Score = 42.7 bits (99), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|183601485|ref|ZP_02962855.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
HN019]
gi|219683973|ref|YP_002470356.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
AD011]
gi|241191015|ref|YP_002968409.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|241196421|ref|YP_002969976.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|384194007|ref|YP_005579753.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
BLC1]
gi|384195573|ref|YP_005581318.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
V9]
gi|387820881|ref|YP_006300924.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
B420]
gi|387822557|ref|YP_006302506.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
Bi-07]
gi|423679541|ref|ZP_17654417.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis BS
01]
gi|183219091|gb|EDT89732.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
HN019]
gi|219621623|gb|ACL29780.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
AD011]
gi|240249407|gb|ACS46347.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|240250975|gb|ACS47914.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|295794004|gb|ADG33539.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
V9]
gi|345282866|gb|AEN76720.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
BLC1]
gi|366041185|gb|EHN17689.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis BS
01]
gi|386653582|gb|AFJ16712.1| SSU ribosomal protein S1p [Bifidobacterium animalis subsp. lactis
B420]
gi|386655165|gb|AFJ18294.1| SSU ribosomal protein S1p [Bifidobacterium animalis subsp. lactis
Bi-07]
Length = 493
Score = 42.7 bits (99), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|152978269|ref|YP_001343898.1| RNA-binding S1 domain-containing protein [Actinobacillus
succinogenes 130Z]
gi|150839992|gb|ABR73963.1| RNA binding S1 domain protein [Actinobacillus succinogenes 130Z]
Length = 773
Score = 42.7 bits (99), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 253 PGRRKRG----KDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG 307
PGR RG + +G+ ++ PG I EG +T V + GAFVDIG DG V I G
Sbjct: 625 PGRDPRGVFKTAVFMDGVEDITDLQPGMILEGTITNVTNF-GAFVDIGVHQDGLVHISG 682
>gi|334136644|ref|ZP_08510104.1| putative ribosomal protein S1 [Paenibacillus sp. HGF7]
gi|333605843|gb|EGL17197.1| putative ribosomal protein S1 [Paenibacillus sp. HGF7]
Length = 418
Score = 42.4 bits (98), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 115/269 (42%), Gaps = 55/269 (20%)
Query: 84 GWAPWEEILTPEADFARKSLNEGDEVALQSPEAVEAFKMLKPSYRMKKIKEMGITEDEWY 143
G P E+ + + + A +++ EG E+ L+ + + L S R +E W
Sbjct: 55 GTIPLRELSSVQIENADQAVQEGQEIELKIVTIDDNKEKLVLSKRSVD------SEKAWE 108
Query: 144 KKQFEIKGEIPEKLETVWAAPL---LVTHVAPRDWPPRGWEVDRKELEYIREAHKLQNVR 200
Q ++ ++ +E V A + LV V R + P V+R +E + +K + +R
Sbjct: 109 TLQQKLDEKVI--IEAVVAEVVKGGLVVDVGVRGFVPASM-VERSFVEDFSD-YKGRTLR 164
Query: 201 VEIGELERKAKFEREGFNFDMYRVFLKQYNQWVAANKDRLEEESYKYDQDYYPGRRKRGK 260
+ + E++R + N+ + + KD L+EE Y+ + + + GK
Sbjct: 165 LRVKEIDR-------------------EKNKVILSQKDVLDEE-YEAQKKDIISKIEVGK 204
Query: 261 DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HI 317
YE + L + GAFVDIGG+ DG V I W+ + H +
Sbjct: 205 VYEGTVQRLTQF-----------------GAFVDIGGI-DGLVHISEMAWHHVEHPSEIV 246
Query: 318 KVGMHVIVEILAKRDPYRFRFPIEMRFVQ 346
K G V V++L K DP + + + ++ Q
Sbjct: 247 KEGDKVSVQVL-KVDPEKDKVSLSLKATQ 274
>gi|148272934|ref|YP_001222495.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|170782356|ref|YP_001710689.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
sepedonicus]
gi|147830864|emb|CAN01808.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|169156925|emb|CAQ02093.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
sepedonicus]
Length = 484
Score = 42.4 bits (98), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHH---IKVGMHVIVEILAKR 331
GQ+ +G V+++ + GAFVD+GGV DG V + W I H ++VG V VEIL +
Sbjct: 211 GQVRKGVVSSIVNF-GAFVDLGGV-DGLVHVSELSWKHIEHASEVVEVGQEVTVEIL-EV 267
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 268 DLDRERVSLSLKATQ 282
>gi|392377191|ref|YP_004984350.1| transcriptional accessory protein with RNA-binding S1 domain
[Azospirillum brasilense Sp245]
gi|356878672|emb|CCC99560.1| transcriptional accessory protein with RNA-binding S1 domain
[Azospirillum brasilense Sp245]
Length = 789
Score = 42.4 bits (98), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 9/100 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ EL G + EG VT V + GAFVDIG DG V I
Sbjct: 624 PGRDPRPEFKTATFQEGVEELKDLQTGMVLEGVVTNVTAF-GAFVDIGVHQDGLVHISQL 682
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRFV 345
+++ +K G V V+++ + D R R + MR
Sbjct: 683 STSFVKDPHTVVKAGDIVKVKVM-EVDIPRKRIGLTMRLT 721
>gi|115377075|ref|ZP_01464291.1| RNA binding S1 [Stigmatella aurantiaca DW4/3-1]
gi|115365914|gb|EAU64933.1| RNA binding S1 [Stigmatella aurantiaca DW4/3-1]
Length = 641
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 5/57 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEIL 328
G++ +GK+T V + GAFVD+GGV +G +P+ + + H +KVG V VEIL
Sbjct: 339 GKVIKGKITGVRDF-GAFVDVGGV-EGMIPVSEMSYQRVGHPSEVVKVGDEVEVEIL 393
>gi|167040244|ref|YP_001663229.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter sp.
X514]
gi|166854484|gb|ABY92893.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X514]
Length = 365
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 250 DYYPGRRKRGKDYEEGMYE--------LPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDG 301
+Y PG++ G E E L G I EG+V + + +GAFVDIGG +DG
Sbjct: 156 EYIPGKKIVGSQKEVLKLEREKAKKALLSNLKEGDIVEGRVKNI-IDKGAFVDIGG-FDG 213
Query: 302 WVPIKGNDWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPN 348
++P+ W I R + +G V + IL K D + + +R V P+
Sbjct: 214 FIPLSEISWERIKNPREVLGMGDKVSIYIL-KVDEKNEKITLSLRKVLPD 262
>gi|310821331|ref|YP_003953689.1| ribosomal protein S1 [Stigmatella aurantiaca DW4/3-1]
gi|309394403|gb|ADO71862.1| Ribosomal protein S1 family protein [Stigmatella aurantiaca
DW4/3-1]
Length = 640
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 5/57 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEIL 328
G++ +GK+T V + GAFVD+GGV +G +P+ + + H +KVG V VEIL
Sbjct: 338 GKVIKGKITGVRDF-GAFVDVGGV-EGMIPVSEMSYQRVGHPSEVVKVGDEVEVEIL 392
>gi|117928296|ref|YP_872847.1| 30S ribosomal protein S1 [Acidothermus cellulolyticus 11B]
gi|117648759|gb|ABK52861.1| SSU ribosomal protein S1P [Acidothermus cellulolyticus 11B]
Length = 515
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI G V+++ + GAFVD+GGV DG V + W I H ++VGM V VE+L
Sbjct: 218 GQIRNGVVSSIVNF-GAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGMPVTVEVL-DV 274
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 275 DLDRERVSLSLKSTQ 289
>gi|300914328|ref|ZP_07131644.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X561]
gi|307724436|ref|YP_003904187.1| RNA-binding S1 domain-containing protein [Thermoanaerobacter sp.
X513]
gi|300889263|gb|EFK84409.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X561]
gi|307581497|gb|ADN54896.1| RNA binding S1 domain protein [Thermoanaerobacter sp. X513]
Length = 367
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 250 DYYPGRRKRGKDYEEGMYE--------LPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDG 301
+Y PG++ G E E L G I EG+V + + +GAFVDIGG +DG
Sbjct: 158 EYIPGKKIVGSQKEVLKLEREKAKKALLSNLKEGDIVEGRVKNI-IDKGAFVDIGG-FDG 215
Query: 302 WVPIKGNDWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPN 348
++P+ W I R + +G V + IL K D + + +R V P+
Sbjct: 216 FIPLSEISWERIKNPREVLGMGDKVSIYIL-KVDEKNEKITLSLRKVLPD 264
>gi|256752965|ref|ZP_05493790.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus
CCSD1]
gi|256748148|gb|EEU61227.1| RNA binding S1 domain protein [Thermoanaerobacter ethanolicus
CCSD1]
Length = 364
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 14/110 (12%)
Query: 250 DYYPGRRKRGKDYEEGMYE--------LPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDG 301
+Y PG++ G E E L G I EG+V + + +GAFVDIGG +DG
Sbjct: 158 EYIPGKKIVGSQKEVLKLEREKAKKALLSNLKEGDIVEGRVKNI-IDKGAFVDIGG-FDG 215
Query: 302 WVPIKGNDWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPN 348
++P+ W I R + +G V + IL K D + + +R V P+
Sbjct: 216 FIPLSEISWERIKNPREVLGMGDKVSIYIL-KVDEKNEKITLSLRKVLPD 264
>gi|399039221|ref|ZP_10734870.1| transcriptional accessory protein [Rhizobium sp. CF122]
gi|398062907|gb|EJL54672.1| transcriptional accessory protein [Rhizobium sp. CF122]
Length = 769
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPI 305
PGR R + EG++E+ PG + EG VT V + GAFVDIG DG V +
Sbjct: 624 PGRDPRPSFKTATFAEGVHEISDLQPGMMLEGTVTNVAAF-GAFVDIGVHQDGLVHV 679
>gi|23015945|ref|ZP_00055708.1| COG2183: Transcriptional accessory protein [Magnetospirillum
magnetotacticum MS-1]
Length = 784
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 67/153 (43%), Gaps = 30/153 (19%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ L PG I EG VT V + GAFVDIG DG V I
Sbjct: 639 PGRDPRPEFKTASFKEGVETLNDLKPGMILEGVVTNVTNF-GAFVDIGVHQDGLVHISVL 697
Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF-VQPNIDHLIFNRFDFAPIFH 364
+++ +K G V V++L + D R R + MR QP AP
Sbjct: 698 ADRFVKDPHEVVKPGDLVKVKVL-EVDLKRQRIALSMRMDAQP------------AP--- 741
Query: 365 RDEDKNPDELRRDCGRPPV-PRKYPGVKPEEEG 396
DE RR+ RP P++ KP++ G
Sbjct: 742 ----ARKDEPRREDRRPASPPQRQSASKPDDSG 770
>gi|409436305|ref|ZP_11263489.1| transcriptional accessory protein [Rhizobium mesoamericanum
STM3625]
gi|408751862|emb|CCM74639.1| transcriptional accessory protein [Rhizobium mesoamericanum
STM3625]
Length = 769
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPI 305
PGR R + EG++E+ PG + EG VT V + GAFVDIG DG V +
Sbjct: 624 PGRDPRPSFKTATFAEGVHEISDLKPGMMLEGTVTNVAAF-GAFVDIGVHQDGLVHV 679
>gi|339627836|ref|YP_004719479.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Sulfobacillus
acidophilus TPY]
gi|379007470|ref|YP_005256921.1| RNA binding S1 domain-containing protein [Sulfobacillus acidophilus
DSM 10332]
gi|339285625|gb|AEJ39736.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
domain protein [Sulfobacillus acidophilus TPY]
gi|361053732|gb|AEW05249.1| RNA binding S1 domain protein [Sulfobacillus acidophilus DSM 10332]
Length = 416
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V ++ + GAF+D+GGV DG + I W+ I H ++VG V V++L +
Sbjct: 212 GQIWEGTVKSLTEF-GAFIDLGGV-DGLLHISEMSWHRINHPSEILEVGQKVRVKVL-RL 268
Query: 332 DPYRFRFPIEMRFVQPN 348
+P + + + +R V+ N
Sbjct: 269 NPEKGKISLGLRQVEGN 285
>gi|392940993|ref|ZP_10306637.1| LOW QUALITY PROTEIN: ribosomal protein S1 [Thermoanaerobacter
siderophilus SR4]
gi|392292743|gb|EIW01187.1| LOW QUALITY PROTEIN: ribosomal protein S1 [Thermoanaerobacter
siderophilus SR4]
Length = 366
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Query: 250 DYYPGRRKRGKDYEEGMYE--------LPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDG 301
+Y PG++ G E E L G I EGKV + + +GAFVDIGG +DG
Sbjct: 158 EYIPGKKIVGSQKEVLKLEREKVKKALLSNLKEGDIVEGKVKNI-IDKGAFVDIGG-FDG 215
Query: 302 WVPIKGNDWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPN 348
++P+ W I R + +G V V IL + + + + +R V P+
Sbjct: 216 FIPLSEISWERIKNPREVLGIGDKVSVYILNVDE--KKKITLSLRKVLPD 263
>gi|86356537|ref|YP_468429.1| transcriptional accessory protein [Rhizobium etli CFN 42]
gi|86280639|gb|ABC89702.1| probable transcriptional accessory protein (RNA binding S1 domain)
[Rhizobium etli CFN 42]
Length = 769
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 62/155 (40%), Gaps = 33/155 (21%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ E+ PG + EG VT V + GAFVDIG DG V +
Sbjct: 624 PGRDPRPSFKTATFAEGVNEISDLTPGMVLEGTVTNVAAF-GAFVDIGVHQDGLVHVSQL 682
Query: 309 DWYWIR--HHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPNIDHLIFNRFDFAPIFHRD 366
+++ H + V+ + + D R R + MR RD
Sbjct: 683 ADRFVKDPHEVVKAGDVVKVRVVEVDAKRKRIGLSMR---------------------RD 721
Query: 367 EDKNPDELRRDC-----GRPPVPRKYPGVKPEEEG 396
+ + + R D GRP R+ KPE +G
Sbjct: 722 DGSSASQPRGDSRGRQGGRPQNDRRPASPKPESQG 756
>gi|225021095|ref|ZP_03710287.1| hypothetical protein CORMATOL_01107 [Corynebacterium matruchotii
ATCC 33806]
gi|224946095|gb|EEG27304.1| hypothetical protein CORMATOL_01107 [Corynebacterium matruchotii
ATCC 33806]
Length = 768
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIK 306
PGR R ++EG+ +L PG I EG VT V + GAFVD+G +DG V +
Sbjct: 621 PGRDPRPEFTTATFKEGVEKLSDLTPGMILEGTVTNVAAF-GAFVDVGVHHDGLVHVS 677
>gi|305680859|ref|ZP_07403666.1| Tex-like protein N-terminal domain protein [Corynebacterium
matruchotii ATCC 14266]
gi|305659064|gb|EFM48564.1| Tex-like protein N-terminal domain protein [Corynebacterium
matruchotii ATCC 14266]
Length = 776
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIK 306
PGR R ++EG+ +L PG I EG VT V + GAFVD+G +DG V +
Sbjct: 621 PGRDPRPEFTTATFKEGVEKLSDLTPGMILEGTVTNVAAF-GAFVDVGVHHDGLVHVS 677
>gi|226197337|ref|ZP_03792914.1| putative tex protein [Burkholderia pseudomallei Pakistan 9]
gi|225930716|gb|EEH26726.1| putative tex protein [Burkholderia pseudomallei Pakistan 9]
Length = 774
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAFVDIG DG V +
Sbjct: 630 PGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAAF-GAFVDIGVHQDGLVHVSAM 688
Query: 309 DWYWIR--HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I+ H I V+ + D R R + MR
Sbjct: 689 STKFIKDPHEIVKAGQVVKVKVLDVDVKRQRISLTMRL 726
>gi|257068664|ref|YP_003154919.1| 30S ribosomal protein S1 [Brachybacterium faecium DSM 4810]
gi|256559482|gb|ACU85329.1| SSU ribosomal protein S1P [Brachybacterium faecium DSM 4810]
Length = 493
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 269 LPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIV 325
L GQ+ EG V+++ + GAFVD+GGV DG V + W I H ++VG V V
Sbjct: 201 LQTLQKGQVREGAVSSIVNF-GAFVDLGGV-DGLVHVSELSWKHIDHPSEVVEVGQKVSV 258
Query: 326 EILAKRDPYRFRFPIEMRFVQPN 348
E+L D R R + ++ Q +
Sbjct: 259 EVL-DVDMDRERVSLSLKATQED 280
>gi|53723516|ref|YP_102989.1| transcription accessory protein, TEX [Burkholderia mallei ATCC
23344]
gi|67641333|ref|ZP_00440114.1| putative tex protein [Burkholderia mallei GB8 horse 4]
gi|121599721|ref|YP_993138.1| putative tex protein [Burkholderia mallei SAVP1]
gi|124384978|ref|YP_001026086.1| tex protein [Burkholderia mallei NCTC 10229]
gi|126438941|ref|YP_001059209.1| tex protein [Burkholderia pseudomallei 668]
gi|126449225|ref|YP_001080644.1| tex protein [Burkholderia mallei NCTC 10247]
gi|126452035|ref|YP_001066475.1| tex protein [Burkholderia pseudomallei 1106a]
gi|134277877|ref|ZP_01764592.1| putative tex protein [Burkholderia pseudomallei 305]
gi|167002226|ref|ZP_02268016.1| putative tex protein [Burkholderia mallei PRL-20]
gi|167845422|ref|ZP_02470930.1| putative tex protein [Burkholderia pseudomallei B7210]
gi|217421596|ref|ZP_03453100.1| putative tex protein [Burkholderia pseudomallei 576]
gi|242316461|ref|ZP_04815477.1| putative tex protein [Burkholderia pseudomallei 1106b]
gi|254177979|ref|ZP_04884634.1| putative tex protein [Burkholderia mallei ATCC 10399]
gi|254197363|ref|ZP_04903785.1| putative tex protein [Burkholderia pseudomallei S13]
gi|254199935|ref|ZP_04906301.1| putative tex protein [Burkholderia mallei FMH]
gi|254206268|ref|ZP_04912620.1| putative tex protein [Burkholderia mallei JHU]
gi|254297444|ref|ZP_04964897.1| putative tex protein [Burkholderia pseudomallei 406e]
gi|254358317|ref|ZP_04974590.1| putative tex protein [Burkholderia mallei 2002721280]
gi|403518904|ref|YP_006653037.1| tex protein [Burkholderia pseudomallei BPC006]
gi|52426939|gb|AAU47532.1| transcription accessory protein, TEX [Burkholderia mallei ATCC
23344]
gi|121228531|gb|ABM51049.1| putative tex protein [Burkholderia mallei SAVP1]
gi|124292998|gb|ABN02267.1| putative tex protein [Burkholderia mallei NCTC 10229]
gi|126218434|gb|ABN81940.1| putative tex protein [Burkholderia pseudomallei 668]
gi|126225677|gb|ABN89217.1| putative tex protein [Burkholderia pseudomallei 1106a]
gi|126242095|gb|ABO05188.1| putative tex protein [Burkholderia mallei NCTC 10247]
gi|134251527|gb|EBA51606.1| putative tex protein [Burkholderia pseudomallei 305]
gi|147749531|gb|EDK56605.1| putative tex protein [Burkholderia mallei FMH]
gi|147753711|gb|EDK60776.1| putative tex protein [Burkholderia mallei JHU]
gi|148027444|gb|EDK85465.1| putative tex protein [Burkholderia mallei 2002721280]
gi|157806810|gb|EDO83980.1| putative tex protein [Burkholderia pseudomallei 406e]
gi|160699018|gb|EDP88988.1| putative tex protein [Burkholderia mallei ATCC 10399]
gi|169654104|gb|EDS86797.1| putative tex protein [Burkholderia pseudomallei S13]
gi|217395338|gb|EEC35356.1| putative tex protein [Burkholderia pseudomallei 576]
gi|238522248|gb|EEP85694.1| putative tex protein [Burkholderia mallei GB8 horse 4]
gi|242139700|gb|EES26102.1| putative tex protein [Burkholderia pseudomallei 1106b]
gi|243062044|gb|EES44230.1| putative tex protein [Burkholderia mallei PRL-20]
gi|403074546|gb|AFR16126.1| putative tex protein [Burkholderia pseudomallei BPC006]
Length = 774
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAFVDIG DG V +
Sbjct: 630 PGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAAF-GAFVDIGVHQDGLVHVSAM 688
Query: 309 DWYWIR--HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I+ H I V+ + D R R + MR
Sbjct: 689 STKFIKDPHEIVKAGQVVKVKVLDVDVKRQRISLTMRL 726
>gi|167719286|ref|ZP_02402522.1| putative tex protein [Burkholderia pseudomallei DM98]
Length = 747
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAFVDIG DG V +
Sbjct: 630 PGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAAF-GAFVDIGVHQDGLVHVSAM 688
Query: 309 DWYWIR--HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I+ H I V+ + D R R + MR
Sbjct: 689 STKFIKDPHEIVKAGQVVKVKVLDVDVKRQRISLTMRL 726
>gi|237812533|ref|YP_002896984.1| tex domain protein [Burkholderia pseudomallei MSHR346]
gi|254179567|ref|ZP_04886166.1| putative tex protein [Burkholderia pseudomallei 1655]
gi|184210107|gb|EDU07150.1| putative tex protein [Burkholderia pseudomallei 1655]
gi|237504765|gb|ACQ97083.1| tex domain protein [Burkholderia pseudomallei MSHR346]
Length = 774
Score = 41.2 bits (95), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAFVDIG DG V +
Sbjct: 630 PGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAAF-GAFVDIGVHQDGLVHVSAM 688
Query: 309 DWYWIR--HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I+ H I V+ + D R R + MR
Sbjct: 689 STKFIKDPHEIVKAGQVVKVKVLDVDVKRQRISLTMRL 726
>gi|167823883|ref|ZP_02455354.1| transcription accessory protein, TEX [Burkholderia pseudomallei 9]
Length = 748
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAFVDIG DG V +
Sbjct: 630 PGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAAF-GAFVDIGVHQDGLVHVSAM 688
Query: 309 DWYWIR--HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I+ H I V+ + D R R + MR
Sbjct: 689 STKFIKDPHEIVKAGQVVKVKVLDVDVKRQRISLTMRL 726
>gi|53719161|ref|YP_108147.1| transcription accessory protein [Burkholderia pseudomallei K96243]
gi|254189042|ref|ZP_04895553.1| putative tex protein [Burkholderia pseudomallei Pasteur 52237]
gi|254261867|ref|ZP_04952921.1| putative tex protein [Burkholderia pseudomallei 1710a]
gi|52209575|emb|CAH35528.1| putative transcription accessory protein [Burkholderia pseudomallei
K96243]
gi|157936721|gb|EDO92391.1| putative tex protein [Burkholderia pseudomallei Pasteur 52237]
gi|254220556|gb|EET09940.1| putative tex protein [Burkholderia pseudomallei 1710a]
Length = 774
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAFVDIG DG V +
Sbjct: 630 PGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAAF-GAFVDIGVHQDGLVHVSAM 688
Query: 309 DWYWIR--HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I+ H I V+ + D R R + MR
Sbjct: 689 STKFIKDPHEIVKAGQVVKVKVLDVDVKRQRISLTMRL 726
>gi|167815472|ref|ZP_02447152.1| transcription accessory protein, TEX [Burkholderia pseudomallei 91]
Length = 747
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAFVDIG DG V +
Sbjct: 630 PGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAAF-GAFVDIGVHQDGLVHVSAM 688
Query: 309 DWYWIR--HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I+ H I V+ + D R R + MR
Sbjct: 689 STKFIKDPHEIVKAGQVVKVKVLDVDVKRQRISLTMRL 726
>gi|167910655|ref|ZP_02497746.1| transcription accessory protein, TEX [Burkholderia pseudomallei
112]
Length = 750
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAFVDIG DG V +
Sbjct: 630 PGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAAF-GAFVDIGVHQDGLVHVSAM 688
Query: 309 DWYWIR--HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I+ H I V+ + D R R + MR
Sbjct: 689 STKFIKDPHEIVKAGQVVKVKVLDVDVKRQRISLTMRL 726
>gi|167738286|ref|ZP_02411060.1| putative tex protein [Burkholderia pseudomallei 14]
gi|167893963|ref|ZP_02481365.1| putative tex protein [Burkholderia pseudomallei 7894]
Length = 748
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAFVDIG DG V +
Sbjct: 630 PGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAAF-GAFVDIGVHQDGLVHVSAM 688
Query: 309 DWYWIR--HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I+ H I V+ + D R R + MR
Sbjct: 689 STKFIKDPHEIVKAGQVVKVKVLDVDVKRQRISLTMRL 726
>gi|154246109|ref|YP_001417067.1| RNA-binding S1 domain-containing protein [Xanthobacter
autotrophicus Py2]
gi|154160194|gb|ABS67410.1| RNA binding S1 domain protein [Xanthobacter autotrophicus Py2]
Length = 780
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWV 303
PGR R + EG+ E+ PG + EG VT V + GAFVDIG DG V
Sbjct: 631 PGRDPRPQFKTATFAEGVNEMSDLKPGMVLEGTVTNVAAF-GAFVDIGVHQDGLV 684
>gi|23336678|ref|ZP_00121881.1| COG0539: Ribosomal protein S1 [Bifidobacterium longum DJO10A]
Length = 484
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
GQI EG V+++ + GAFVD+GGV DG + + W I H +KVG V VE+L
Sbjct: 209 GQIREGVVSSIVNF-GAFVDLGGV-DGLIHVSELSWKHIDHPSEVVKVGDKVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DLDRERISLSLKATQ 280
>gi|82702712|ref|YP_412278.1| RNA binding S1 [Nitrosospira multiformis ATCC 25196]
gi|82410777|gb|ABB74886.1| RNA binding S1 [Nitrosospira multiformis ATCC 25196]
Length = 790
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG 307
PGR R ++EG+ E+ PG + EG VT V + GAFVDIG DG V I
Sbjct: 643 PGRDPRPEFITAAFKEGVNEISDLQPGMLLEGVVTNVAAF-GAFVDIGVHQDGLVHISA 700
>gi|330817153|ref|YP_004360858.1| RNA binding S1 [Burkholderia gladioli BSR3]
gi|327369546|gb|AEA60902.1| RNA binding S1 [Burkholderia gladioli BSR3]
Length = 777
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAFVDIG DG V +
Sbjct: 630 PGRDPRPEFKTATFREGVEKVSDLMPGMVLEGVVTNVAAF-GAFVDIGVHQDGLVHVSAM 688
Query: 309 DWYWIR 314
+I+
Sbjct: 689 STKFIK 694
>gi|300858740|ref|YP_003783723.1| hypothetical protein cpfrc_01323 [Corynebacterium
pseudotuberculosis FRC41]
gi|384504917|ref|YP_005681587.1| transcriptional accessory protein [Corynebacterium
pseudotuberculosis 1002]
gi|300686194|gb|ADK29116.1| hypothetical protein cpfrc_01323 [Corynebacterium
pseudotuberculosis FRC41]
gi|302331003|gb|ADL21197.1| Transcriptional accessory protein [Corynebacterium
pseudotuberculosis 1002]
Length = 767
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ ++ PG I EG VT V + GAFVD+G DG V +
Sbjct: 613 PGRDPRPEFATATFKEGVEKISDLIPGMILEGTVTNVAAF-GAFVDVGVHQDGLVHVSAL 671
Query: 309 DWYWIR--HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ H++ V+ + DP R R + M+
Sbjct: 672 AETFVSDPHYVVRSGQVVKVKVMDVDPERKRISLSMKL 709
>gi|383314500|ref|YP_005375355.1| transcriptional accessory protein [Corynebacterium
pseudotuberculosis P54B96]
gi|384507013|ref|YP_005683682.1| transcriptional accessory protein [Corynebacterium
pseudotuberculosis C231]
gi|384509101|ref|YP_005685769.1| transcriptional accessory protein [Corynebacterium
pseudotuberculosis I19]
gi|384511192|ref|YP_005690770.1| transcriptional accessory protein [Corynebacterium
pseudotuberculosis PAT10]
gi|302206447|gb|ADL10789.1| Transcriptional accessory protein [Corynebacterium
pseudotuberculosis C231]
gi|308276689|gb|ADO26588.1| Transcriptional accessory protein [Corynebacterium
pseudotuberculosis I19]
gi|341825131|gb|AEK92652.1| Transcriptional accessory protein [Corynebacterium
pseudotuberculosis PAT10]
gi|380870001|gb|AFF22475.1| Transcriptional accessory protein [Corynebacterium
pseudotuberculosis P54B96]
Length = 767
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ ++ PG I EG VT V + GAFVD+G DG V +
Sbjct: 613 PGRDPRPEFATATFKEGVEKISDLIPGMILEGTVTNVAAF-GAFVDVGVHQDGLVHVSAL 671
Query: 309 DWYWIR--HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ H++ V+ + DP R R + M+
Sbjct: 672 AETFVSDPHYVVRSGQVVKVKVMDVDPERKRISLSMKL 709
>gi|219850614|ref|YP_002465047.1| RNA binding S1 domain-containing protein [Chloroflexus aggregans
DSM 9485]
gi|219544873|gb|ACL26611.1| RNA binding S1 domain protein [Chloroflexus aggregans DSM 9485]
Length = 539
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWI---RHHIKVGMHVIVEILAKR 331
G I EG V V Y GA +D+GG+ +G+V ++ DW+WI R+ +++G V ++
Sbjct: 385 GSIVEGTVLRVLSY-GAVIDLGGI-EGFVHVRDIDWHWISDARNALQLGQPV-RAMITNI 441
Query: 332 DPYRFRFPIEMRFVQPN 348
D R + +R + P+
Sbjct: 442 DRQHLRINLSIRELTPD 458
>gi|406982823|gb|EKE04093.1| Ribosomal protein S1 [uncultured bacterium]
Length = 423
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 290 GAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKRDPYRFRFPIEMRFVQ 346
GAF+DIGG+ DG +P+ W W+ H + VG + VEI+ D + R + ++ Q
Sbjct: 219 GAFIDIGGI-DGLLPLSQMSWRWVDHPADILTVGNKINVEIIG-IDHDKQRVSLSLKSQQ 276
Query: 347 PN 348
P+
Sbjct: 277 PD 278
>gi|385807801|ref|YP_005844198.1| transcriptional accessory protein [Corynebacterium
pseudotuberculosis 267]
gi|383805194|gb|AFH52273.1| Transcriptional accessory protein [Corynebacterium
pseudotuberculosis 267]
Length = 768
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ ++ PG I EG VT V + GAFVD+G DG V +
Sbjct: 614 PGRDPRPEFATATFKEGVEKISDLIPGMILEGTVTNVAAF-GAFVDVGVHQDGLVHVSAL 672
Query: 309 DWYWIR--HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ H++ V+ + DP R R + M+
Sbjct: 673 AETFVSDPHYVVRSGQVVKVKVMDVDPERKRISLSMKL 710
>gi|386861548|ref|YP_006274497.1| transcription accessory protein, TEX [Burkholderia pseudomallei
1026b]
gi|418539400|ref|ZP_13104996.1| transcription accessory protein, TEX [Burkholderia pseudomallei
1026a]
gi|418540692|ref|ZP_13106217.1| transcription accessory protein, TEX [Burkholderia pseudomallei
1258a]
gi|418546937|ref|ZP_13112123.1| transcription accessory protein, TEX [Burkholderia pseudomallei
1258b]
gi|385346024|gb|EIF52717.1| transcription accessory protein, TEX [Burkholderia pseudomallei
1026a]
gi|385360826|gb|EIF66733.1| transcription accessory protein, TEX [Burkholderia pseudomallei
1258a]
gi|385362736|gb|EIF68541.1| transcription accessory protein, TEX [Burkholderia pseudomallei
1258b]
gi|385658676|gb|AFI66099.1| transcription accessory protein, TEX [Burkholderia pseudomallei
1026b]
Length = 821
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAFVDIG DG V +
Sbjct: 677 PGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAAF-GAFVDIGVHQDGLVHVSAM 735
Query: 309 DWYWIR--HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I+ H I V+ + D R R + MR
Sbjct: 736 STKFIKDPHEIVKAGQVVKVKVLDVDVKRQRISLTMRL 773
>gi|76811207|ref|YP_333734.1| transcription accessory protein, TEX [Burkholderia pseudomallei
1710b]
gi|418383013|ref|ZP_12966931.1| transcription accessory protein, TEX [Burkholderia pseudomallei
354a]
gi|418553156|ref|ZP_13117994.1| transcription accessory protein, TEX [Burkholderia pseudomallei
354e]
gi|76580660|gb|ABA50135.1| transcription accessory protein, TEX [Burkholderia pseudomallei
1710b]
gi|385372090|gb|EIF77222.1| transcription accessory protein, TEX [Burkholderia pseudomallei
354e]
gi|385376784|gb|EIF81420.1| transcription accessory protein, TEX [Burkholderia pseudomallei
354a]
Length = 821
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAFVDIG DG V +
Sbjct: 677 PGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAAF-GAFVDIGVHQDGLVHVSAM 735
Query: 309 DWYWIR--HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
+I+ H I V+ + D R R + MR
Sbjct: 736 STKFIKDPHEIVKAGQVVKVKVLDVDVKRQRISLTMRL 773
>gi|424904608|ref|ZP_18328118.1| transcription accessory protein, TEX [Burkholderia thailandensis
MSMB43]
gi|390930586|gb|EIP87988.1| transcription accessory protein, TEX [Burkholderia thailandensis
MSMB43]
Length = 771
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAFVDIG DG V +
Sbjct: 630 PGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAAF-GAFVDIGVHQDGLVHVSAM 688
Query: 309 DWYWIR 314
+I+
Sbjct: 689 STKFIK 694
>gi|167836414|ref|ZP_02463297.1| transcription accessory protein, TEX [Burkholderia thailandensis
MSMB43]
Length = 740
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAFVDIG DG V +
Sbjct: 630 PGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAAF-GAFVDIGVHQDGLVHVSAM 688
Query: 309 DWYWIR 314
+I+
Sbjct: 689 STKFIK 694
>gi|441145796|ref|ZP_20963914.1| 30S ribosomal protein S1 [Streptomyces rimosus subsp. rimosus ATCC
10970]
gi|440620900|gb|ELQ83923.1| 30S ribosomal protein S1 [Streptomyces rimosus subsp. rimosus ATCC
10970]
Length = 166
Score = 40.0 bits (92), Expect = 3.7, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 274 PGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAK 330
PG++C G+V +V + GAF+D+ GV G+V + W I H ++ G +IV +L
Sbjct: 17 PGKVCRGRVHSVTDF-GAFIDLDGV-TGFVTVPNLTWDRIDHPSQAVQTGEEIIVVVLGV 74
Query: 331 RDPYRFRFPIEMRFVQPN 348
DP R + + ++ +QP+
Sbjct: 75 -DPDRHQPYLSIKDLQPD 91
>gi|387773845|ref|ZP_10129130.1| Tex-like protein N-terminal domain protein [Haemophilus
parahaemolyticus HK385]
gi|386903666|gb|EIJ68473.1| Tex-like protein N-terminal domain protein [Haemophilus
parahaemolyticus HK385]
Length = 775
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIK-- 306
PGR RG+ + +G+ ++ G I EG VT V + GAFVDIG DG V I
Sbjct: 632 PGRDPRGEFKTATFVDGVEDIKDLQVGMILEGTVTNVANF-GAFVDIGVHQDGLVHISML 690
Query: 307 GNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPNIDHLIFNRFDFAPIFHRD 366
N + H + V+ + + D R R + MR +D + R + ++
Sbjct: 691 SNSFVDDPHKVVKVGDVVKVKVLEVDVARKRIALSMR-----LDEKLTERSEEKSPVRKN 745
Query: 367 EDKNPDELRRDCGR 380
+K+ D L+R+ GR
Sbjct: 746 SEKS-DRLQRNSGR 758
>gi|386388763|ref|ZP_10073616.1| general secretion pathway protein K-like protein [Haemophilus
paraphrohaemolyticus HK411]
gi|385697277|gb|EIG27712.1| general secretion pathway protein K-like protein [Haemophilus
paraphrohaemolyticus HK411]
Length = 775
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIK-- 306
PGR RG+ + +G+ E+ G I EG VT V + GAFVDIG DG V I
Sbjct: 632 PGRDPRGEFKTATFVDGVEEIKDLQVGMILEGTVTNVANF-GAFVDIGVHQDGLVHISML 690
Query: 307 GNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
N + H + V+ + + D R R + MR
Sbjct: 691 SNSFVEDPHKVVKVGDVVKVKVLEVDVTRKRIALSMRL 728
>gi|254252272|ref|ZP_04945590.1| RNA binding S1 [Burkholderia dolosa AUO158]
gi|124894881|gb|EAY68761.1| RNA binding S1 [Burkholderia dolosa AUO158]
Length = 841
Score = 40.0 bits (92), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAFVDIG DG V +
Sbjct: 697 PGRDPRPEFKTATFREGVEKVSDLVPGMLLEGVVTNVAAF-GAFVDIGVHQDGLVHVSAM 755
Query: 309 DWYWIR 314
+I+
Sbjct: 756 STKFIK 761
>gi|433512443|ref|ZP_20469246.1| S1 RNA binding domain protein [Neisseria meningitidis 63049]
gi|432250638|gb|ELL06029.1| S1 RNA binding domain protein [Neisseria meningitidis 63049]
Length = 153
Score = 40.0 bits (92), Expect = 4.5, Method: Composition-based stats.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 10 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 68
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 69 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 106
>gi|358445279|ref|ZP_09155889.1| putative transcriptional accessory protein [Corynebacterium casei
UCMA 3821]
gi|356608725|emb|CCE54132.1| putative transcriptional accessory protein [Corynebacterium casei
UCMA 3821]
Length = 758
Score = 40.0 bits (92), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ ++ PG + EG VT V + GAFVD+G DG V I
Sbjct: 613 PGRDPRPEFKTATFKEGVEKISDLTPGMVLEGTVTNVAAF-GAFVDVGVHQDGLVHISAM 671
Query: 309 DWYWI 313
++
Sbjct: 672 SNSYV 676
>gi|428215544|ref|YP_007088688.1| transcriptional accessory protein [Oscillatoria acuminata PCC 6304]
gi|428003925|gb|AFY84768.1| transcriptional accessory protein [Oscillatoria acuminata PCC 6304]
Length = 731
Score = 40.0 bits (92), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPI 305
PGR R + ++EG+ EL PG EG VT V + GAFVDIG DG V I
Sbjct: 619 PGRDPRAQFKSATFKEGVNELKDLQPGMELEGVVTNVANF-GAFVDIGVHQDGLVHI 674
>gi|218671814|ref|ZP_03521483.1| probable transcriptional accessory protein (RNA binding S1 domain)
[Rhizobium etli GR56]
Length = 256
Score = 40.0 bits (92), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 262 YEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPI 305
+ EG+ E+ PG + EG VT V + GAFVDIG DG V +
Sbjct: 124 FAEGVNEISDLKPGMVLEGTVTNVAAF-GAFVDIGVHQDGLVHV 166
>gi|83720619|ref|YP_442769.1| transcription accessory protein, TEX [Burkholderia thailandensis
E264]
gi|257138979|ref|ZP_05587241.1| transcription accessory protein, TEX [Burkholderia thailandensis
E264]
gi|83654444|gb|ABC38507.1| transcription accessory protein, TEX [Burkholderia thailandensis
E264]
Length = 775
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAFVD+G DG V +
Sbjct: 630 PGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAAF-GAFVDVGVHQDGLVHVSAM 688
Query: 309 DWYWIR 314
+I+
Sbjct: 689 STKFIK 694
>gi|167562568|ref|ZP_02355484.1| putative tex protein [Burkholderia oklahomensis EO147]
Length = 774
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAFVDIG DG V +
Sbjct: 630 PGRDPRPEFKTATFREGVEKVSDLTPGMVLEGVVTNVAAF-GAFVDIGVHQDGLVHVSAM 688
Query: 309 DWYWIR 314
+++
Sbjct: 689 STKFVK 694
>gi|167619837|ref|ZP_02388468.1| transcription accessory protein, TEX [Burkholderia thailandensis
Bt4]
Length = 751
Score = 39.7 bits (91), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAFVD+G DG V +
Sbjct: 630 PGRDPRPEFKTATFREGVEKVSDLAPGMVLEGVVTNVAAF-GAFVDVGVHQDGLVHVSAM 688
Query: 309 DWYWIR 314
+I+
Sbjct: 689 STKFIK 694
>gi|167587066|ref|ZP_02379454.1| RNA binding S1 [Burkholderia ubonensis Bu]
Length = 640
Score = 39.7 bits (91), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG I EG VT V + GAFVD+G DG V +
Sbjct: 495 PGRDPRPEFKTATFREGVEKVSDLVPGMILEGVVTNVAAF-GAFVDVGVHQDGLVHVSAL 553
Query: 309 DWYWIR 314
+I+
Sbjct: 554 STKFIK 559
>gi|339482190|ref|YP_004693976.1| Tex-like protein [Nitrosomonas sp. Is79A3]
gi|338804335|gb|AEJ00577.1| Tex-like protein [Nitrosomonas sp. Is79A3]
Length = 742
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKG 307
PGR R ++EG+ + + G + EG VT V + GAFVDIG DG V I
Sbjct: 637 PGRDPRSTFKTATFKEGIETMKDLHSGMVLEGVVTNVAAF-GAFVDIGVHQDGLVHISA 694
>gi|167569750|ref|ZP_02362624.1| transcription accessory protein, TEX [Burkholderia oklahomensis
C6786]
Length = 324
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + EG+ ++ PG + EG VT V + GAFVDIG DG V +
Sbjct: 180 PGRDPRPEFKTATFREGVEKVSDLTPGMVLEGVVTNVAAF-GAFVDIGVHQDGLVHVSAM 238
Query: 309 DWYWIR 314
+++
Sbjct: 239 STKFVK 244
>gi|158520180|ref|YP_001528050.1| RNA-binding S1 domain-containing protein [Desulfococcus oleovorans
Hxd3]
gi|158509006|gb|ABW65973.1| RNA binding S1 domain protein [Desulfococcus oleovorans Hxd3]
Length = 759
Score = 39.3 bits (90), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 21/132 (15%)
Query: 247 YDQDYYPGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGW 302
D+ PGR R + EG+ + PG G VT + + GAFVDIG DG
Sbjct: 603 LDELAKPGRDPRQAFESVSFIEGINTIDDVQPGMKLPGIVTNITAF-GAFVDIGVHQDGL 661
Query: 303 VPIKGNDWYWIRH---HIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPNIDHLIFNRFDF 359
V I +++ +KV V+V +L + D R R + M+ +P
Sbjct: 662 VHISQMADRFVKSPADIVKVQQRVMVTVL-EVDKERKRISLSMKAERP------------ 708
Query: 360 APIFHRDEDKNP 371
AP R+E P
Sbjct: 709 APTAAREETAGP 720
>gi|148658063|ref|YP_001278268.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1]
gi|148570173|gb|ABQ92318.1| RNA binding S1 domain protein [Roseiflexus sp. RS-1]
Length = 514
Score = 38.9 bits (89), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 46/102 (45%), Gaps = 15/102 (14%)
Query: 245 YKYDQDYYPGRRKRGKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVP 304
Y+ + PGR +R KD PG EG+VT++ LY G FVDIG DG V
Sbjct: 122 YQAPAEETPGRPRRVKD----------LAPGMELEGRVTSIALY-GIFVDIGVGRDGLVH 170
Query: 305 IKGNDWYWIRH---HIKVGMHVIVEILAKRDPYRFRFPIEMR 343
I I +K+G V V + + +P R + MR
Sbjct: 171 ISEMSDTRIESPSDLVKIGDTVKVRVKSV-EPDGRRISLTMR 211
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,199,647,271
Number of Sequences: 23463169
Number of extensions: 582932230
Number of successful extensions: 1927684
Number of sequences better than 100.0: 568
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 531
Number of HSP's that attempted gapping in prelim test: 1926886
Number of HSP's gapped (non-prelim): 926
length of query: 681
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 531
effective length of database: 8,839,720,017
effective search space: 4693891329027
effective search space used: 4693891329027
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 81 (35.8 bits)