BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005716
         (681 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3BZC|A Chain A, Crystal Structure Of The Tex Protein From Pseudomonas
           Aeruginosa, Crystal Form I
 pdb|3BZK|A Chain A, Crystal Structure Of The Tex Protein From Pseudomonas
           Aeruginosa, Crystal Form 2
          Length = 785

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)

Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
           PGR  R      +++EG+  L    PG + EG VT V  + GAFVDIG   DG V I   
Sbjct: 629 PGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 687

Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
              +++     +K G  V V+++ + D  R R  + MR 
Sbjct: 688 SEKFVKDPYEVVKAGDIVKVKVM-EVDIPRNRVGLSMRM 725


>pdb|2OCE|A Chain A, Crystal Structure Of Tex Family Protein Pa5201 From
           Pseudomonas Aeruginosa
          Length = 780

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 9/99 (9%)

Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
           PGR  R      +++EG+  L    PG + EG VT V  + GAFVDIG   DG V I   
Sbjct: 630 PGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISAL 688

Query: 309 DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
              +++     +K G  V V+++ + D  R R  + MR 
Sbjct: 689 SEKFVKDPYEVVKAGDIVKVKVM-EVDIPRNRVGLSMRM 726


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.137    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,137,841
Number of Sequences: 62578
Number of extensions: 946997
Number of successful extensions: 2030
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2028
Number of HSP's gapped (non-prelim): 7
length of query: 681
length of database: 14,973,337
effective HSP length: 105
effective length of query: 576
effective length of database: 8,402,647
effective search space: 4839924672
effective search space used: 4839924672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)