BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005716
(681 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q45388|TEX_BORPE Protein tex OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589
/ NCTC 13251) GN=tex PE=4 SV=2
Length = 791
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R ++EG+ L +PG + EG VT V + GAFVDIG DG V I
Sbjct: 644 PGRDPRPEFKTAQFKEGVETLNDLFPGMVLEGVVTNVANF-GAFVDIGVHQDGLVHISAL 702
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R ++VG V V++L + D R R + MR
Sbjct: 703 AEKFVKDPRDVVRVGQTVTVKVL-EVDVARKRVALTMRL 740
>sp|P57072|YHGF_NEIMA Uncharacterized protein NMA0194 OS=Neisseria meningitidis serogroup
A / serotype 4A (strain Z2491) GN=NMA0194 PE=4 SV=1
Length = 757
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>sp|Q51152|YHGF_NEIMB Uncharacterized protein NMB0075 OS=Neisseria meningitidis serogroup
B (strain MC58) GN=NMB0075 PE=4 SV=2
Length = 757
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG++E+ G I EG V+ V + GAFVDIG DG V I
Sbjct: 614 PGRDPRGEFQTASFAEGIHEISDLQVGMILEGVVSNVANF-GAFVDIGVHQDGLVHISAL 672
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ R +K G V V++L + D R R + MR
Sbjct: 673 SNKFVQDPREVVKAGDVVKVKVL-EVDAARKRIALTMRL 710
>sp|P71353|Y568_HAEIN Uncharacterized protein HI_0568 OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0568 PE=4 SV=1
Length = 762
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 253 PGRRKRGK----DYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR RG+ + EG+ E+ G I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRGEFKTAVFAEGVEEITDLKSGMILEGTVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ +K G V V++L + D R R + MR
Sbjct: 684 SDKFVEDPHQVVKTGNIVKVKVL-EVDVPRKRIALTMRL 721
>sp|P46837|YHGF_ECOLI Protein YhgF OS=Escherichia coli (strain K12) GN=yhgF PE=1 SV=3
Length = 773
Score = 41.6 bits (96), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 253 PGRRKR----GKDYEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN 308
PGR R + +G+ + PG I EG VT V + GAFVDIG DG V I
Sbjct: 625 PGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNF-GAFVDIGVHQDGLVHISSL 683
Query: 309 DWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344
++ +K G V V++L + D R R + MR
Sbjct: 684 SNKFVEDPHTVVKAGDIVKVKVL-EVDLQRKRIALTMRL 721
>sp|P46836|RS1_MYCLE 30S ribosomal protein S1 OS=Mycobacterium leprae (strain TN)
GN=rpsA PE=3 SV=2
Length = 481
Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
G I +G V+++ + GAFVD+GGV DG V + W I H ++VG V VE+L
Sbjct: 209 GAIRKGVVSSIVNF-GAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGNEVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DMDRERVSLSLKATQ 280
>sp|O06147|RS1_MYCTU 30S ribosomal protein S1 OS=Mycobacterium tuberculosis GN=rpsA PE=3
SV=1
Length = 481
Score = 38.1 bits (87), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEILAKR 331
G I +G V+++ + GAFVD+GGV DG V + W I H ++VG V VE+L
Sbjct: 209 GTIRKGVVSSIVNF-GAFVDLGGV-DGLVHVSELSWKHIDHPSEVVQVGDEVTVEVL-DV 265
Query: 332 DPYRFRFPIEMRFVQ 346
D R R + ++ Q
Sbjct: 266 DMDRERVSLSLKATQ 280
>sp|Q18DN4|HMU_HALWD Halomucin OS=Haloquadratum walsbyi (strain DSM 16790) GN=hmu PE=4
SV=1
Length = 9159
Score = 37.0 bits (84), Expect = 0.50, Method: Composition-based stats.
Identities = 39/114 (34%), Positives = 55/114 (48%), Gaps = 17/114 (14%)
Query: 567 YDYWGEPKNSEKSLQERMRDAHNKSIVGKGMVWYEMSYDDVIKQKMQREARSKCVTPEEV 626
+ +GE K+SE++L + D V + Y SY D+ +A S PE
Sbjct: 8328 HQLFGEYKSSERNLT--VEDVDGGISVDVSNISYSASYVDI-------KADSTAPVPESA 8378
Query: 627 EEEDSTSGHGNGDDD---DDGDFDYSILSDSSSLSFSNQPVVNGTESSSISDEG 677
E+DS S +GDD D GD D S +D S SNQ +G +SSS +D+G
Sbjct: 8379 LEDDS-SNQDSGDDSSNQDSGD-DSSSQNDDGDNS-SNQD--SGDDSSSQNDDG 8427
>sp|P14129|RS1_RHIME 30S ribosomal protein S1 OS=Rhizobium meliloti (strain 1021)
GN=rpsA PE=3 SV=2
Length = 568
Score = 37.0 bits (84), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRH---HIKVGMHVIVEIL 328
GQ+ EG V + Y GAFVD+GG+ DG + + W + H + +G V V+I+
Sbjct: 198 GQVVEGVVKNITDY-GAFVDLGGI-DGLLHVTDMAWRRVNHPSEILNIGQQVKVQII 252
>sp|Q9KFF9|ALR_BACHD Alanine racemase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM
18197 / FERM 7344 / JCM 9153 / C-125) GN=alr PE=3 SV=1
Length = 388
Score = 34.3 bits (77), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 288 YQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQ 346
Y +V G + G +PI D WIRHH G HV+++ KR P+ R ++ ++
Sbjct: 269 YGATYVTEGAEWIGTLPIGYADG-WIRHHSNAGGHVLID--GKRAPFVGRICMDQCMIR 324
>sp|B3MMA5|RAD54_DROAN DNA repair and recombination protein RAD54-like OS=Drosophila
ananassae GN=okr PE=3 SV=1
Length = 791
Score = 33.5 bits (75), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 561 SNPLYRYDYWGEPKNSEKSLQERMRDAHNKSIVGKGMVWYEMSYDDVIKQK-MQREARSK 619
+N L+ +D P N E+++ RD K Y + I++K +QR+ K
Sbjct: 591 ANRLFMFDPDWNPANDEQAMARVWRDGQKKPC-----YIYRLVASGTIEEKILQRQTHKK 645
Query: 620 CVTPEEVEEEDSTSGHGNGDDDDDG-DFDYSILSDS 654
++ ++ +S+ H DD D FD ILSD+
Sbjct: 646 SLSSTIIDNNESSEKHFTRDDLKDLFSFDQKILSDT 681
>sp|B4NXB8|RAD54_DROYA DNA repair and recombination protein RAD54-like OS=Drosophila
yakuba GN=okr PE=3 SV=2
Length = 784
Score = 33.1 bits (74), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 561 SNPLYRYDYWGEPKNSEKSLQERMRDAHNKSIVGKGMVWYEMSYDDVIKQK-MQREARSK 619
+N L+ +D P N E+++ RD K Y M I++K +QR+ K
Sbjct: 588 ANRLFMFDPDWNPANDEQAMARVWRDGQKKPC-----YIYRMVASGSIEEKILQRQTHKK 642
Query: 620 CVTPEEVEEEDSTSGHGNGDDDDDG-DFDYSILSDS 654
++ ++ +S H DD D FD ILSD+
Sbjct: 643 SLSSTIIDNNESAEKHFTRDDLKDLFTFDADILSDT 678
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 291,641,018
Number of Sequences: 539616
Number of extensions: 14066019
Number of successful extensions: 49697
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 134
Number of HSP's that attempted gapping in prelim test: 49495
Number of HSP's gapped (non-prelim): 319
length of query: 681
length of database: 191,569,459
effective HSP length: 124
effective length of query: 557
effective length of database: 124,657,075
effective search space: 69433990775
effective search space used: 69433990775
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)