Query 005716
Match_columns 681
No_of_seqs 173 out of 719
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 05:26:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005716.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005716hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kl9_A Eukaryotic translation 99.9 1.4E-27 4.8E-32 223.4 0.6 115 272-411 13-133 (182)
2 3go5_A Multidomain protein wit 99.9 2.4E-22 8.1E-27 198.6 7.5 120 269-414 64-187 (285)
3 2a19_A EIF-2- alpha, eukaryoti 99.8 3.9E-22 1.3E-26 185.3 4.2 95 273-376 14-113 (175)
4 2khi_A 30S ribosomal protein S 99.8 6.1E-21 2.1E-25 164.5 10.5 86 270-357 26-115 (115)
5 1q8k_A Eukaryotic translation 99.8 2.6E-21 9E-26 193.9 4.0 107 270-399 9-121 (308)
6 2eqs_A ATP-dependent RNA helic 99.8 1E-19 3.6E-24 154.6 9.3 83 268-354 6-95 (103)
7 2cqo_A Nucleolar protein of 40 99.8 6.8E-20 2.3E-24 160.3 7.9 84 270-354 18-106 (119)
8 2k52_A Uncharacterized protein 99.8 2.1E-19 7.3E-24 145.8 9.5 75 271-348 2-76 (80)
9 2k4k_A GSP13, general stress p 99.8 9.5E-20 3.2E-24 160.9 7.7 80 270-351 3-85 (130)
10 1luz_A Protein K3, protein K2; 99.8 3.1E-19 1.1E-23 149.4 8.1 75 270-348 7-87 (88)
11 3aev_A Translation initiation 99.8 1.3E-19 4.5E-24 178.7 3.0 98 270-376 7-109 (275)
12 3psi_A Transcription elongatio 99.7 1.1E-18 3.8E-23 199.4 9.6 92 252-345 871-975 (1219)
13 3cw2_C Translation initiation 99.7 7.1E-19 2.4E-23 172.2 4.0 96 267-364 4-104 (266)
14 3bzc_A TEX; helix-turn-helix, 99.7 1.2E-18 4E-23 192.2 5.6 92 253-346 629-727 (785)
15 2khj_A 30S ribosomal protein S 99.7 8E-18 2.7E-22 143.4 8.8 77 269-347 26-105 (109)
16 3psf_A Transcription elongatio 99.7 5.9E-19 2E-23 199.1 1.3 93 252-346 874-979 (1030)
17 1e3p_A Guanosine pentaphosphat 99.6 3.6E-17 1.2E-21 179.8 -1.1 86 270-358 663-755 (757)
18 1wi5_A RRP5 protein homolog; S 99.6 1.2E-15 4E-20 131.8 8.2 80 264-346 11-96 (119)
19 4aid_A Polyribonucleotide nucl 99.6 7E-17 2.4E-21 177.1 0.0 87 270-359 633-722 (726)
20 3go5_A Multidomain protein wit 99.6 1.4E-15 4.8E-20 150.5 9.0 100 270-376 148-253 (285)
21 3cdi_A Polynucleotide phosphor 99.6 2E-16 7E-21 173.1 0.0 82 270-354 623-707 (723)
22 1go3_E DNA-directed RNA polyme 99.6 7.6E-15 2.6E-19 134.4 9.0 79 271-351 78-174 (187)
23 4ayb_E DNA-directed RNA polyme 99.5 1.7E-14 5.7E-19 131.7 8.1 77 271-349 78-171 (180)
24 2b8k_G B16, DNA-directed RNA p 99.5 2.1E-14 7.2E-19 137.6 7.9 84 272-359 81-180 (215)
25 1y14_B B16, RPB7, DNA-directed 99.5 6.5E-14 2.2E-18 127.7 7.7 68 273-344 82-165 (171)
26 2nn6_I 3'-5' exoribonuclease C 99.5 9.5E-14 3.2E-18 132.1 8.4 74 271-346 78-164 (209)
27 2c35_B Human RPB7, DNA-directe 99.5 9E-14 3.1E-18 126.4 7.7 69 273-345 80-166 (172)
28 3m7n_A Putative uncharacterize 99.4 2.6E-13 9E-18 125.6 7.6 66 272-345 56-134 (179)
29 3h0g_G DNA-directed RNA polyme 99.3 3.9E-13 1.3E-17 123.3 4.1 70 272-344 82-166 (172)
30 2je6_I RRP4, exosome complex R 99.3 4.1E-12 1.4E-16 123.9 7.5 95 271-379 71-171 (251)
31 2z0s_A Probable exosome comple 99.3 5.1E-12 1.7E-16 121.3 7.3 92 271-376 63-161 (235)
32 2ba0_A Archeal exosome RNA bin 99.2 2.1E-11 7.3E-16 117.2 9.3 92 271-376 54-149 (229)
33 2bx2_L Ribonuclease E, RNAse E 99.1 1.8E-10 6.2E-15 122.9 8.5 79 271-350 42-133 (517)
34 1hh2_P NUSA, N utilization sub 99.0 1.1E-10 3.8E-15 119.3 5.0 86 272-364 132-217 (344)
35 2bh8_A 1B11; transcription, mo 98.9 4.5E-10 1.5E-14 96.1 4.6 44 270-314 57-100 (101)
36 2id0_A Exoribonuclease 2; RNAs 98.9 3.3E-09 1.1E-13 114.4 8.6 68 273-342 557-642 (644)
37 2bh8_A 1B11; transcription, mo 98.8 2.8E-09 9.6E-14 91.2 4.9 81 271-413 10-94 (101)
38 3ayh_B DNA-directed RNA polyme 98.8 9.2E-09 3.2E-13 97.0 8.8 57 273-331 80-158 (203)
39 2nn6_H Exosome complex exonucl 98.8 3.1E-09 1.1E-13 107.1 5.4 117 271-412 92-222 (308)
40 2vnu_D Exosome complex exonucl 98.7 1.3E-08 4.3E-13 111.9 6.7 66 276-343 671-760 (760)
41 2wp8_J Exosome complex exonucl 98.7 1.6E-08 5.4E-13 114.3 7.6 68 275-343 887-977 (977)
42 1k0r_A NUSA; two component arr 98.6 5.5E-08 1.9E-12 100.6 6.5 100 272-379 128-234 (366)
43 2ckz_B C25, DNA-directed RNA p 98.5 1.1E-07 3.8E-12 91.3 7.6 58 273-331 80-154 (218)
44 1e3p_A Guanosine pentaphosphat 98.4 3.3E-08 1.1E-12 109.4 -0.3 93 269-413 604-700 (757)
45 2ja9_A Exosome complex exonucl 98.3 2.4E-06 8.1E-11 80.2 8.7 98 272-379 5-107 (175)
46 2asb_A Transcription elongatio 98.1 7.2E-06 2.5E-10 81.5 7.9 67 273-343 6-80 (251)
47 2khj_A 30S ribosomal protein S 98.0 8.9E-07 3E-11 75.4 0.4 54 339-413 11-64 (109)
48 3cdi_A Polynucleotide phosphor 98.0 1.1E-06 3.6E-11 97.1 0.0 79 281-413 581-660 (723)
49 2khi_A 30S ribosomal protein S 97.9 1.8E-06 6.1E-11 74.5 0.2 53 340-413 11-63 (115)
50 2nn6_G Exosome complex exonucl 97.2 0.00084 2.9E-08 67.5 8.1 99 272-379 125-226 (289)
51 2cqo_A Nucleolar protein of 40 96.5 0.00051 1.8E-08 60.1 0.7 49 344-413 7-56 (119)
52 2r7d_A Ribonuclease II family 95.8 0.015 5.3E-07 61.2 7.4 58 273-342 402-460 (469)
53 4aid_A Polyribonucleotide nucl 95.8 0.0012 4.2E-08 73.4 -1.0 80 281-413 591-670 (726)
54 2a19_A EIF-2- alpha, eukaryoti 95.4 0.0029 1E-07 59.0 0.2 40 353-413 8-50 (175)
55 1kl9_A Eukaryotic translation 95.2 0.0041 1.4E-07 58.5 0.7 38 355-413 10-50 (182)
56 2k4k_A GSP13, general stress p 94.8 0.0048 1.6E-07 54.5 -0.1 39 354-413 2-40 (130)
57 2eqs_A ATP-dependent RNA helic 94.4 0.01 3.5E-07 50.3 1.1 38 355-413 8-48 (103)
58 2k52_A Uncharacterized protein 93.9 0.0084 2.9E-07 48.4 -0.5 36 357-413 3-38 (80)
59 1go3_E DNA-directed RNA polyme 92.5 0.044 1.5E-06 50.2 1.9 36 356-413 78-113 (187)
60 2k5n_A Putative cold-shock pro 92.3 0.7 2.4E-05 38.1 8.6 64 276-348 1-68 (74)
61 3d0f_A Penicillin-binding 1 tr 92.0 0.39 1.3E-05 40.7 7.0 51 275-326 34-93 (106)
62 1y14_B B16, RPB7, DNA-directed 92.0 0.029 1E-06 51.1 0.0 33 358-412 82-114 (171)
63 1q8k_A Eukaryotic translation 90.8 0.052 1.8E-06 55.0 0.5 39 354-413 7-48 (308)
64 3aev_A Translation initiation 90.0 0.061 2.1E-06 53.5 0.2 38 355-413 6-46 (275)
65 2b8k_G B16, DNA-directed RNA p 89.6 0.06 2.1E-06 51.8 -0.2 33 358-412 82-114 (215)
66 3cw2_C Translation initiation 88.7 0.13 4.4E-06 50.8 1.4 35 358-413 10-46 (266)
67 1luz_A Protein K3, protein K2; 88.7 0.087 3E-06 44.0 0.2 21 391-411 21-43 (88)
68 2yty_A Cold shock domain-conta 88.4 0.85 2.9E-05 38.7 6.0 60 266-329 7-68 (88)
69 3aqq_A Calcium-regulated heat 88.0 1.6 5.5E-05 40.5 8.1 71 274-349 59-133 (147)
70 3psf_A Transcription elongatio 87.7 0.1 3.6E-06 60.2 0.0 38 355-413 901-938 (1030)
71 3psi_A Transcription elongatio 87.3 0.14 5E-06 60.0 0.9 38 355-413 898-935 (1219)
72 1wfq_A UNR protein; beta-barre 86.9 5.5 0.00019 33.8 10.1 68 274-347 15-85 (89)
73 4ayb_E DNA-directed RNA polyme 86.4 0.15 5.2E-06 46.5 0.3 38 354-413 76-113 (180)
74 3bzc_A TEX; helix-turn-helix, 85.7 0.18 6E-06 56.9 0.5 37 356-413 651-687 (785)
75 1wi5_A RRP5 protein homolog; S 84.7 0.27 9.1E-06 42.3 1.0 52 339-412 2-54 (119)
76 2c35_B Human RPB7, DNA-directe 84.0 0.49 1.7E-05 42.9 2.5 32 359-412 81-112 (172)
77 2rf4_A DNA-directed RNA polyme 83.1 2.5 8.5E-05 40.4 7.0 58 272-332 127-201 (214)
78 3h0g_G DNA-directed RNA polyme 81.8 0.36 1.2E-05 44.3 0.7 33 358-412 83-115 (172)
79 2ytx_A Cold shock domain-conta 79.4 5.6 0.00019 34.1 7.3 65 274-345 15-81 (97)
80 3i2z_B RNA chaperone, negative 78.4 6.6 0.00023 31.7 7.0 51 277-330 5-59 (71)
81 1hh2_P NUSA, N utilization sub 77.3 0.27 9.3E-06 50.7 -1.8 73 314-411 84-164 (344)
82 2ytv_A Cold shock domain-conta 74.7 1.6 5.3E-05 36.4 2.4 52 275-330 6-59 (79)
83 3a0j_A Cold shock protein; OB- 74.2 15 0.00053 29.7 8.1 66 278-345 2-68 (73)
84 1h95_A CSD, Y-box binding prot 70.3 13 0.00044 30.6 6.9 53 276-330 7-66 (79)
85 2k50_A Replication factor A re 69.2 16 0.00056 30.6 7.5 77 265-344 6-98 (115)
86 3cam_A Cold-shock domain famil 69.0 29 0.00098 27.8 8.5 60 278-343 2-65 (67)
87 1gut_A Mopii, molybdate bindin 67.3 4.9 0.00017 30.5 3.6 51 276-330 7-62 (68)
88 2dgy_A MGC11102 protein; EIF-1 67.2 18 0.00063 32.1 7.7 72 266-343 6-80 (111)
89 3m7n_A Putative uncharacterize 66.5 1.1 3.7E-05 41.6 -0.3 34 360-414 58-101 (179)
90 1c9o_A CSPB, cold-shock protei 65.0 19 0.00066 28.5 6.7 52 278-330 2-54 (66)
91 1k3r_A Conserved protein MT000 64.8 12 0.00041 37.7 6.7 46 272-330 100-147 (268)
92 2nn6_I 3'-5' exoribonuclease C 63.8 1.7 5.7E-05 41.5 0.4 37 356-413 78-122 (209)
93 2z0s_A Probable exosome comple 63.7 1.8 6.3E-05 41.6 0.7 36 358-414 65-100 (235)
94 1fr3_A MOP, molybdate/tungstat 62.9 12 0.00042 27.8 5.0 51 276-330 7-61 (67)
95 1x65_A UNR protein; cell-free 62.7 6 0.00021 33.7 3.6 51 276-330 7-58 (89)
96 3ts2_A Protein LIN-28 homolog 62.0 15 0.0005 33.5 6.3 70 276-349 8-86 (148)
97 1g6p_A Cold shock protein TMCS 60.6 12 0.00041 29.7 4.8 51 279-330 2-53 (66)
98 1d7q_A Translation initiation 60.2 35 0.0012 31.8 8.5 74 264-342 20-94 (143)
99 1jjg_A M156R; beta barrel, S1 57.6 48 0.0017 29.7 8.5 73 253-331 6-92 (102)
100 2kcm_A Cold shock domain famil 57.5 32 0.0011 28.3 6.9 62 279-347 2-68 (74)
101 2lss_A Cold shock-like protein 61.5 2.3 7.8E-05 34.4 0.0 52 276-330 3-58 (70)
102 3i4o_A Translation initiation 55.6 11 0.00038 31.8 4.0 61 277-341 15-77 (79)
103 2kbn_A Conserved protein; nucl 49.4 64 0.0022 27.5 7.8 72 267-342 6-85 (109)
104 3ulj_A LIN28B, DNA-binding pro 49.3 36 0.0012 29.1 6.2 62 277-342 8-78 (90)
105 3h8z_A FragIle X mental retard 47.3 35 0.0012 31.1 6.1 56 273-329 13-73 (128)
106 3ayh_B DNA-directed RNA polyme 45.5 5.4 0.00019 37.6 0.6 34 358-413 80-113 (203)
107 3bju_A Lysyl-tRNA synthetase; 45.5 60 0.002 34.9 8.6 65 277-343 59-133 (521)
108 1yez_A MM1357; MAR30, autostru 44.4 38 0.0013 26.5 5.3 47 272-330 11-57 (68)
109 1yvc_A MRR5; structure, autost 44.0 39 0.0013 26.9 5.3 47 272-330 13-59 (70)
110 2id0_A Exoribonuclease 2; RNAs 43.6 4 0.00014 44.6 -0.7 36 357-413 556-594 (644)
111 1h9m_A MODG, molybdenum-bindin 42.5 39 0.0013 28.0 5.3 51 276-329 82-136 (145)
112 2ot2_A Hydrogenase isoenzymes 38.3 31 0.0011 29.8 4.1 43 278-327 5-52 (90)
113 2je6_I RRP4, exosome complex R 35.9 8.9 0.0003 37.6 0.5 36 358-414 73-108 (251)
114 2oqk_A Putative translation in 34.1 55 0.0019 29.0 5.1 71 264-339 21-92 (117)
115 2bx2_L Ribonuclease E, RNAse E 33.7 9.9 0.00034 41.3 0.4 37 356-413 42-80 (517)
116 1o7i_A SSB, SSO2364, single st 32.2 93 0.0032 26.5 6.2 74 267-344 3-89 (119)
117 1wjj_A Hypothetical protein F2 31.5 1.4E+02 0.0049 27.3 7.6 83 263-354 13-118 (145)
118 1ixr_A Holliday junction DNA h 30.4 51 0.0017 31.2 4.6 56 277-338 4-59 (191)
119 2wp8_J Exosome complex exonucl 30.3 12 0.00042 43.1 0.5 33 360-413 887-920 (977)
120 2ztd_A Holliday junction ATP-d 30.1 65 0.0022 31.2 5.4 48 277-330 20-67 (212)
121 1cuk_A RUVA protein; DNA repai 29.8 90 0.0031 29.8 6.2 49 277-330 4-52 (203)
122 2l55_A SILB,silver efflux prot 29.5 1.2E+02 0.004 25.3 6.1 45 278-330 6-61 (82)
123 2vb2_X Copper protein, cation 28.3 1.4E+02 0.0049 25.0 6.5 46 277-330 17-75 (88)
124 2qcp_X Cation efflux system pr 27.6 1.6E+02 0.0053 24.3 6.5 46 277-330 9-67 (80)
125 2ckz_B C25, DNA-directed RNA p 27.5 14 0.00047 35.6 0.2 34 359-413 81-114 (218)
126 2gnr_A Conserved hypothetical 26.9 72 0.0025 29.0 4.8 107 216-330 19-138 (145)
127 1jt8_A EIF-1A, probable transl 24.5 31 0.0011 30.3 1.8 60 277-341 21-83 (102)
128 1oww_A FN, fibronectin first t 23.9 42 0.0014 30.0 2.5 24 265-288 61-84 (98)
129 3d3r_A Hydrogenase assembly ch 23.8 66 0.0023 28.6 3.8 44 278-327 26-70 (103)
130 3nem_A Aspartyl-tRNA synthetas 22.1 2.4E+02 0.0083 29.6 8.3 50 274-326 15-75 (438)
131 1hyo_A Fumarylacetoacetate hyd 21.9 22 0.00077 37.4 0.5 66 269-340 339-407 (421)
132 2ba0_A Archeal exosome RNA bin 21.4 29 0.00099 33.4 1.1 36 358-414 56-91 (229)
133 2z1c_A Hydrogenase expression/ 20.6 1E+02 0.0035 25.8 4.1 41 279-327 6-46 (75)
No 1
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.93 E-value=1.4e-27 Score=223.41 Aligned_cols=115 Identities=18% Similarity=0.197 Sum_probs=100.8
Q ss_pred CCCCCEEEEEEEEeeecceeEEEc--CCceeeeeEcccccccccc---cccccCCEEEEEEEEeeCCCCCeeeeeeeccC
Q 005716 272 YYPGQICEGKVTTVHLYQGAFVDI--GGVYDGWVPIKGNDWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQ 346 (681)
Q Consensus 272 LkeGqIVEGkVtnItdF~GAFVDI--GGv~DGLVHISEISW~rI~---dVLKVGDeVkVKVLsIdD~eR~RISLSLK~~~ 346 (681)
.++|+++.|+|++|++| ||||+| +++.+||||||||||.++. +++++||+|+|+|+++ |++++||+||||.+.
T Consensus 13 p~~G~iv~G~V~~I~~f-GaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~v-D~~~~rI~LSlk~~~ 90 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEM-GAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRV-DKEKGYIDLSKRRVS 90 (182)
T ss_dssp CCTTCEEEEEEEEECSS-EEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEE-ETTTTEEEEESTTCC
T ss_pred CCCCCEEEEEEEEEecc-EEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEE-ECCCCEEEEEEeecC
Confidence 47899999999999999 999999 4557999999999998764 5999999999999999 788899999999999
Q ss_pred CCccccccccCCCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCC-CCcccccCccccceeeeh
Q 005716 347 PNIDHLIFNRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPE-EEGLLSTHPYVDKLWQIH 411 (681)
Q Consensus 347 pnPW~~I~erf~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~e-fgafve~hP~VegL~hIs 411 (681)
++||..+.++|+.+.+++ +.|.+ +++ || +++.|+|+||+|+|
T Consensus 91 ~~p~~~~~~~~~~g~~v~-------g~v~~--------------i~~~~g--v~l~~giegl~h~s 133 (182)
T 1kl9_A 91 PEEAIKCEDKFTKSKTVY-------SILRH--------------VAEVLE--YTKDEQLESLFQRT 133 (182)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHH--------------HHHHTT--CCSHHHHHHHHHHT
T ss_pred cChHHHHHHhccCCCEEE-------EEEEE--------------chhhcC--CcccCChhheEEee
Confidence 999999999999999999 99999 888 99 89999999999998
No 2
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.86 E-value=2.4e-22 Score=198.57 Aligned_cols=120 Identities=14% Similarity=-0.072 Sum_probs=108.8
Q ss_pred CCCCCCCCEEEEEEEEee-ecceeEEEcCC-ceeeeeEcccccccccccccccCCEEEEEEEEeeCCCCCeeeeeeecc-
Q 005716 269 LPFYYPGQICEGKVTTVH-LYQGAFVDIGG-VYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFV- 345 (681)
Q Consensus 269 L~~LkeGqIVEGkVtnIt-dF~GAFVDIGG-v~DGLVHISEISW~rI~dVLKVGDeVkVKVLsIdD~eR~RISLSLK~~- 345 (681)
.+.+++|+++.|+|++|+ +| |||||+|+ +.|||||+||++|.+.. .+++||+|.|+ |.+ |+ +.||+||+|+.
T Consensus 64 ~p~~~~G~~~~g~V~~v~~~~-GaFVdiG~~~~d~lvp~sel~~~~~~-~~~~Gd~v~v~-l~i-D~-~~Ri~ls~k~~~ 138 (285)
T 3go5_A 64 EVTATQDQFGWGRVTEVRKDL-GVFVDTGLPDKEIVVSLDILPELKEL-WPKKGDQLYIR-LEV-DK-KDRIWGLLAYQE 138 (285)
T ss_dssp CCCSCSSSCEEEEEEEEETTT-EEEEECSCTTCCEEEEGGGSCSSGGG-SCCTTCEEEEE-EEE-CT-TSCEEEEECCHH
T ss_pred cccccCCCEEEEEEEEEccCc-eEEEEECCCCcEEEEEHHHCCccccc-ccCCCCEEEEE-EEE-CC-CCcEEEEehhhh
Confidence 467899999999999999 89 99999998 67999999999997653 57999999766 689 66 68999999976
Q ss_pred CCCccccccccCCCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCccc-ccCccccceeeehhhh
Q 005716 346 QPNIDHLIFNRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLL-STHPYVDKLWQIHNAE 414 (681)
Q Consensus 346 ~pnPW~~I~erf~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafv-e~hP~VegL~hIs~aE 414 (681)
..+||.....+|+.|.++. +.|.+ +++||+|| .+.++|+||+|+|..-
T Consensus 139 ~~~~~~~~~~~~~~G~~V~-------g~V~~--------------i~~~G~fV~~i~~g~~Glih~SEl~ 187 (285)
T 3go5_A 139 DFQRLARPAYNNMQNQNWP-------AIVYR--------------LKLSGTFVYLPENNMLGFIHPSERY 187 (285)
T ss_dssp HHHHHCCCCCSCCTTCEEE-------EEEEE--------------EETTEEEEEETTTTEEEEECGGGCS
T ss_pred hcchhhhhhhhCCCCCEEE-------EEEEE--------------EeCCcEEEEEeCCCeEEEEEHHHcc
Confidence 5799999999999999999 99999 99999999 9999999999999754
No 3
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.84 E-value=3.9e-22 Score=185.31 Aligned_cols=95 Identities=19% Similarity=0.170 Sum_probs=81.8
Q ss_pred CCCCEEEEEEEEeeecceeEEEcC--CceeeeeEcccccccccc---cccccCCEEEEEEEEeeCCCCCeeeeeeeccCC
Q 005716 273 YPGQICEGKVTTVHLYQGAFVDIG--GVYDGWVPIKGNDWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQP 347 (681)
Q Consensus 273 keGqIVEGkVtnItdF~GAFVDIG--Gv~DGLVHISEISW~rI~---dVLKVGDeVkVKVLsIdD~eR~RISLSLK~~~p 347 (681)
++|+++.|+|++|++| ||||+|. ++.+||||||+|||.++. +++++||+|+|+|+++ |+.++||+||||.+.+
T Consensus 14 ~~G~iv~G~V~~i~~f-GaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~v-d~~~~~I~LSlk~~~~ 91 (175)
T 2a19_A 14 EIDDIVMVNVQQIAEM-GAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRV-DKEKGYIDLSKRRVSS 91 (175)
T ss_dssp CTTCEEEEEEEEEETT-EEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEE-ETTTTEEEEESTTCCH
T ss_pred CCCCEEEEEEEEEecc-eEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEE-ECCCCeEEEEEEecCc
Confidence 4899999999999999 9999992 456999999999998764 5999999999999999 7888999999999999
Q ss_pred CccccccccCCCCCccccCCCCCchhhhh
Q 005716 348 NIDHLIFNRFDFAPIFHRDEDKNPDELRR 376 (681)
Q Consensus 348 nPW~~I~erf~vgpI~~r~~d~n~geV~R 376 (681)
+||..+.++|+.|.+++ +.|++
T Consensus 92 ~~~~~~~~~~~~g~~v~-------g~V~~ 113 (175)
T 2a19_A 92 EDIIKCEEKYQKSKTVH-------SILRY 113 (175)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHH
T ss_pred ChHHHHHHhccCCCcce-------EEEEE
Confidence 99999999999999999 88888
No 4
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.84 E-value=6.1e-21 Score=164.53 Aligned_cols=86 Identities=27% Similarity=0.348 Sum_probs=79.0
Q ss_pred CCCCCCCEEEEEEEEeeecceeEEEcCCceeeeeEccccccc-c---cccccccCCEEEEEEEEeeCCCCCeeeeeeecc
Q 005716 270 PFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWY-W---IRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFV 345 (681)
Q Consensus 270 ~~LkeGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~-r---I~dVLKVGDeVkVKVLsIdD~eR~RISLSLK~~ 345 (681)
..+++|+++.|+|++|++| ||||+|+++.+||||+|+++|. + +.+++++||.|+|+|+++ |.+++||+||||.+
T Consensus 26 ~~~~~G~~~~G~V~~v~~~-G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~v-d~~~~rI~lslk~~ 103 (115)
T 2khi_A 26 KRYPEGTKLTGRVTNLTDY-GCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDI-DEERRRISLGLKQC 103 (115)
T ss_dssp CSSCSSCEEEEEEEEEETT-EEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEE-ETTTTEEEECCCCC
T ss_pred hcCCCCCEEEEEEEEEECC-EEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEE-ECCCCEEEEEEEec
Confidence 5789999999999999999 9999998778999999999994 4 445999999999999999 67789999999999
Q ss_pred CCCccccccccC
Q 005716 346 QPNIDHLIFNRF 357 (681)
Q Consensus 346 ~pnPW~~I~erf 357 (681)
.+|||+.+.++|
T Consensus 104 ~~~p~~~~~~~~ 115 (115)
T 2khi_A 104 KANPWQQFAETH 115 (115)
T ss_dssp CSSCCCCCCCCC
T ss_pred CcCHHHHHHhhC
Confidence 999999998875
No 5
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.82 E-value=2.6e-21 Score=193.90 Aligned_cols=107 Identities=19% Similarity=0.191 Sum_probs=98.5
Q ss_pred CCCCCCCEEEEEEEEeeecceeEEEcC--CceeeeeEcccccccccc---cccccCCEEEEEEEEeeCCCCCeeeeeeec
Q 005716 270 PFYYPGQICEGKVTTVHLYQGAFVDIG--GVYDGWVPIKGNDWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344 (681)
Q Consensus 270 ~~LkeGqIVEGkVtnItdF~GAFVDIG--Gv~DGLVHISEISW~rI~---dVLKVGDeVkVKVLsIdD~eR~RISLSLK~ 344 (681)
..+++|+++.|+|++|++| ||||+|+ ++.+||||||+|||.+++ +++++||.|+|+|+++ |+.++||+||+|.
T Consensus 9 ~~~~vG~iv~G~V~~I~~f-GaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~v-D~~~~rI~LSlK~ 86 (308)
T 1q8k_A 9 KFPEVEDVVMVNVRSIQEM-GAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRV-DKEKGYIDLSKRR 86 (308)
T ss_dssp CCCSSCCEEEEEEEEEETT-EEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEE-ETTTTEEEEECSS
T ss_pred cCCCCCCEEEEEEEEEeCc-EEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEE-eCCCCEEEEEEEe
Confidence 3457999999999999999 9999997 567999999999998764 5999999999999999 7888999999999
Q ss_pred cCCCccccccccCCCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCC-CCcccc
Q 005716 345 VQPNIDHLIFNRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPE-EEGLLS 399 (681)
Q Consensus 345 ~~pnPW~~I~erf~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~e-fgafve 399 (681)
+.++||..+..+|+.|.+++ |.|.+ ..+ ||+|++
T Consensus 87 ~~~~p~~~~~~~~~~G~~v~-------G~V~~--------------v~~~~G~fi~ 121 (308)
T 1q8k_A 87 VSPEEAIKCEDKFTKSKTVY-------SILRH--------------VAEVLEYTKD 121 (308)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-------HHHHH--------------HHHHTTCCSS
T ss_pred cccChHHHHHHHccCCCeeE-------EEEEE--------------cccccCCccC
Confidence 99999999999999999999 99999 777 699974
No 6
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1e-19 Score=154.57 Aligned_cols=83 Identities=23% Similarity=0.286 Sum_probs=73.5
Q ss_pred cCCCCCCCCEEEEEEEEeeecceeEEEcCC---ceeeeeEcccc-cccccc---cccccCCEEEEEEEEeeCCCCCeeee
Q 005716 268 ELPFYYPGQICEGKVTTVHLYQGAFVDIGG---VYDGWVPIKGN-DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPI 340 (681)
Q Consensus 268 ~L~~LkeGqIVEGkVtnItdF~GAFVDIGG---v~DGLVHISEI-SW~rI~---dVLKVGDeVkVKVLsIdD~eR~RISL 340 (681)
....+++|++++|+|++|++| ||||+|++ +.+||||||+| +|.++. +++++||+|+|+|++++ . .||+|
T Consensus 6 ~~~~~~vG~i~~G~V~~v~~f-G~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd-~--~~i~L 81 (103)
T 2eqs_A 6 SGEEPTIGDIYNGKVTSIMQF-GCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFT-G--TKTSL 81 (103)
T ss_dssp CCSSCCTTCEEEEEEEEECSS-CEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEE-T--TEEEE
T ss_pred ccccCCCCCEEEEEEEEEecc-EEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEE-C--CeeEE
Confidence 346789999999999999999 99999985 67999999999 666554 59999999999999995 3 59999
Q ss_pred eeeccCCCcccccc
Q 005716 341 EMRFVQPNIDHLIF 354 (681)
Q Consensus 341 SLK~~~pnPW~~I~ 354 (681)
|||.+.++||..+.
T Consensus 82 Slk~~~~~~~~~~~ 95 (103)
T 2eqs_A 82 SMKDVDQETGEDLN 95 (103)
T ss_dssp ESTTBCTTTCCBCC
T ss_pred EEeecccCCchhcC
Confidence 99999999998764
No 7
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6.8e-20 Score=160.31 Aligned_cols=84 Identities=23% Similarity=0.296 Sum_probs=74.1
Q ss_pred CCCCCCCEEEEEEEEeeecceeEEEcCC-ceeeeeEcccccccccc---cccccCCEEEEEEEEeeCC-CCCeeeeeeec
Q 005716 270 PFYYPGQICEGKVTTVHLYQGAFVDIGG-VYDGWVPIKGNDWYWIR---HHIKVGMHVIVEILAKRDP-YRFRFPIEMRF 344 (681)
Q Consensus 270 ~~LkeGqIVEGkVtnItdF~GAFVDIGG-v~DGLVHISEISW~rI~---dVLKVGDeVkVKVLsIdD~-eR~RISLSLK~ 344 (681)
..+++|++++|+|++|++| ||||+|++ ..+||||||+|+|.++. +++++||+|+|+|++++.. .+.||+||||.
T Consensus 18 ~~~~vG~iv~G~V~~I~~f-GaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~LSlk~ 96 (119)
T 2cqo_A 18 NLPALYTIFQGEVAMVTDY-GAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKV 96 (119)
T ss_dssp CSCCTTCEEEEEEEEEETT-EEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEEEESTT
T ss_pred cccCCCCEEEEEEEEEeCc-eEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccCceEEEEEee
Confidence 4678999999999999999 99999966 37999999999998765 4899999999999999432 24799999999
Q ss_pred cCCCcccccc
Q 005716 345 VQPNIDHLIF 354 (681)
Q Consensus 345 ~~pnPW~~I~ 354 (681)
+.++||+.+.
T Consensus 97 ~~~~~~~~~~ 106 (119)
T 2cqo_A 97 VNQGTGKDLD 106 (119)
T ss_dssp BCSSSCCBSC
T ss_pred cccCCccccC
Confidence 9999998864
No 8
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.79 E-value=2.1e-19 Score=145.80 Aligned_cols=75 Identities=20% Similarity=0.346 Sum_probs=69.0
Q ss_pred CCCCCCEEEEEEEEeeecceeEEEcCCceeeeeEcccccccccccccccCCEEEEEEEEeeCCCCCeeeeeeeccCCC
Q 005716 271 FYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPN 348 (681)
Q Consensus 271 ~LkeGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsIdD~eR~RISLSLK~~~pn 348 (681)
++++|++++|+|++|++| ||||+|+.+.+||||+|+++|.++ +.+++||.|+|+|+++ |..++||+||+|.+.+.
T Consensus 2 ~~~~G~iv~G~V~~v~~~-G~fV~l~~~~~Gllh~sel~~~~~-~~~~~Gd~V~v~V~~v-d~~~~~i~lsl~~~~~~ 76 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKY-GAFINLNEQVRGLLRPRDMISLRL-ENLNVGDEIIVQAIDV-RPEKREIDFKYIPLEHH 76 (80)
T ss_dssp CCCTTCEEEEEEEEEETT-EEEEEEETTEEEEECGGGCSSCCG-GGCCTTCEEEEEEEEE-ETTTTEEEEEECSCC--
T ss_pred CCCCCCEEEEEEEEEeCC-EEEEEECCCCEEEEEHHHCCcccc-eeeCCCCEEEEEEEEE-ECCCCEEEEEEeecccc
Confidence 478999999999999999 999999877899999999999888 8999999999999999 77889999999998875
No 9
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.79 E-value=9.5e-20 Score=160.89 Aligned_cols=80 Identities=29% Similarity=0.442 Sum_probs=74.1
Q ss_pred CCCCCCCEEEEEEEEeeecceeEEEcCCceeeeeEccccccccc---ccccccCCEEEEEEEEeeCCCCCeeeeeeeccC
Q 005716 270 PFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQ 346 (681)
Q Consensus 270 ~~LkeGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~rI---~dVLKVGDeVkVKVLsIdD~eR~RISLSLK~~~ 346 (681)
..+++|+++.|+|++|++| ||||+|+++.+||||||+|+|.++ .+++++||.|+|+|++| |.++.||+||||.+.
T Consensus 3 ~~~~vG~iv~G~V~~i~~~-G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~v-d~~~~kI~LSlk~~~ 80 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAY-GAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAV-DEEKGKISLSIRATQ 80 (130)
T ss_dssp CCCCTTCEEEEEEEEEETT-EEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEE-ETTTTEEEEESHHHH
T ss_pred CcCCCCCEEEEEEEEEeCC-eEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEE-eCCCCEEEEEEeecc
Confidence 5789999999999999999 999999777899999999999765 46999999999999999 677899999999999
Q ss_pred CCccc
Q 005716 347 PNIDH 351 (681)
Q Consensus 347 pnPW~ 351 (681)
++||.
T Consensus 81 ~~p~~ 85 (130)
T 2k4k_A 81 AAPEK 85 (130)
T ss_dssp HSCCC
T ss_pred cCccc
Confidence 99987
No 10
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.78 E-value=3.1e-19 Score=149.40 Aligned_cols=75 Identities=12% Similarity=0.162 Sum_probs=66.8
Q ss_pred CCCCCCCEEEEEEEEeeecceeEEEcC--CceeeeeEcc-cccccccc---cccccCCEEEEEEEEeeCCCCCeeeeeee
Q 005716 270 PFYYPGQICEGKVTTVHLYQGAFVDIG--GVYDGWVPIK-GNDWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMR 343 (681)
Q Consensus 270 ~~LkeGqIVEGkVtnItdF~GAFVDIG--Gv~DGLVHIS-EISW~rI~---dVLKVGDeVkVKVLsIdD~eR~RISLSLK 343 (681)
...++|++++|+|+ |++| ||||+|+ ++.+|||||| +|+|.++. +++ +||+|+|+|+++ |++++||+||||
T Consensus 7 ~~~~vG~~~~G~V~-v~~f-G~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~-~Gd~V~VkV~~v-d~~~~kI~lslk 82 (88)
T 1luz_A 7 SLPNAGDVIKGRVY-EKDY-ALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL-VGKTVKVKVIRV-DYTKGYIDVNYK 82 (88)
T ss_dssp CCCCTTCEEEEEEE-EETT-EEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH-TTCEEEEEEEEE-ETTTTEEEEEEE
T ss_pred cCCCCCCEEEEEEE-EEcc-EEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe-CCCEEEEEEEEE-ECCCCEEEEEEe
Confidence 34689999999999 9999 9999995 2469999999 99997764 578 999999999999 788899999999
Q ss_pred ccCCC
Q 005716 344 FVQPN 348 (681)
Q Consensus 344 ~~~pn 348 (681)
.+.+|
T Consensus 83 ~~~~~ 87 (88)
T 1luz_A 83 RMCRH 87 (88)
T ss_dssp EECSC
T ss_pred ecCCC
Confidence 98876
No 11
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.76 E-value=1.3e-19 Score=178.71 Aligned_cols=98 Identities=21% Similarity=0.380 Sum_probs=90.0
Q ss_pred CCCCCCCEEEEEEEEeeecceeEEEcC--CceeeeeEcccccccccc---cccccCCEEEEEEEEeeCCCCCeeeeeeec
Q 005716 270 PFYYPGQICEGKVTTVHLYQGAFVDIG--GVYDGWVPIKGNDWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344 (681)
Q Consensus 270 ~~LkeGqIVEGkVtnItdF~GAFVDIG--Gv~DGLVHISEISW~rI~---dVLKVGDeVkVKVLsIdD~eR~RISLSLK~ 344 (681)
...++|+++.|+|++|++| ||||+|+ ++.+||||||+|+|.++. +++++||.|.|+|+++ |+.++||+||||.
T Consensus 7 ~~p~~Gdiv~G~V~~I~~f-GaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~v-D~~~~~I~LSlk~ 84 (275)
T 3aev_A 7 EYPEEGEFVVATVKRIHNY-GAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRV-DPRKGHIDLSLRR 84 (275)
T ss_dssp CCCCTTCEEEEEEEEEETT-EEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEE-ETTTTEEEEESTT
T ss_pred cCCCCCCEEEEEEEEEECc-EEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEE-ECCCCEEEEEEee
Confidence 3456899999999999999 9999997 457999999999998765 5999999999999999 7888999999999
Q ss_pred cCCCccccccccCCCCCccccCCCCCchhhhh
Q 005716 345 VQPNIDHLIFNRFDFAPIFHRDEDKNPDELRR 376 (681)
Q Consensus 345 ~~pnPW~~I~erf~vgpI~~r~~d~n~geV~R 376 (681)
+.++||....++|+.|.+++ +.|.+
T Consensus 85 ~~~~~~~~~~~~~~~g~~v~-------g~v~~ 109 (275)
T 3aev_A 85 VTQQQRKAKLQEFKRAQKAE-------NLLRL 109 (275)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-------HHHHH
T ss_pred cCcchhHHHHHhccCCCeEE-------EEEEE
Confidence 99999999999999999999 88887
No 12
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.1e-18 Score=199.40 Aligned_cols=92 Identities=9% Similarity=-0.043 Sum_probs=84.8
Q ss_pred CCCCCCCCcc----hhhhc-----ccCCCCCCCCEEEEEEEEeeecceeEEEcCCceeeeeEcccccccc-c---ccccc
Q 005716 252 YPGRRKRGKD----YEEGM-----YELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYW-I---RHHIK 318 (681)
Q Consensus 252 ~PGRDPR~~~----f~egv-----~~L~~LkeGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~r-I---~dVLK 318 (681)
.||||||... |.+++ .++.+|++|++|+|+|++|++| ||||+|+++.+||||||+|||.+ + .++|+
T Consensus 871 ~P~rD~R~~f~~~~~~e~~~mltget~~~l~~G~iv~G~V~~V~~f-GaFV~L~~gveGLVHiSelsd~~~v~~p~~v~k 949 (1219)
T 3psi_A 871 DGFEELRNDFHPLQGDEIFQSLTGESEKTFFKGSIIPVRVERFWHN-DIICTTNSEVECVVNAQRHAGAQLRRPANEIYE 949 (1219)
T ss_dssp SSSCCCSBCCCCBCHHHHHHHHTCCCTTTSCTTCEEEEEEEEECSS-CEEEECTTSCEEEECTTSSSSTTSCSCSTTTSC
T ss_pred ccCCCCCcccCCCCHHHHHHhhccCcHhhCCCCCEEEEEEEEEecc-eEEEEeCCCceEEEEHHHcCCCcccCCHHHcCC
Confidence 4899999984 88888 7899999999999999999999 99999997889999999999976 4 46999
Q ss_pred cCCEEEEEEEEeeCCCCCeeeeeeecc
Q 005716 319 VGMHVIVEILAKRDPYRFRFPIEMRFV 345 (681)
Q Consensus 319 VGDeVkVKVLsIdD~eR~RISLSLK~~ 345 (681)
+||+|+|+|++| |..++||+||||..
T Consensus 950 vGd~V~vkVl~V-D~~~~rI~LSlk~~ 975 (1219)
T 3psi_A 950 IGKTYPAKVIYI-DYANITAEVSLLDH 975 (1219)
T ss_dssp TTCEEEEEEEEE-EGGGTEEEEECCHH
T ss_pred CCCEEEEEEEEE-ECCCCEEEEEecHH
Confidence 999999999999 78899999999964
No 13
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=99.73 E-value=7.1e-19 Score=172.25 Aligned_cols=96 Identities=17% Similarity=0.260 Sum_probs=88.0
Q ss_pred ccCCCCCCCCEEEEEEEEeeecceeEEEcC--CceeeeeEcccccccccc---cccccCCEEEEEEEEeeCCCCCeeeee
Q 005716 267 YELPFYYPGQICEGKVTTVHLYQGAFVDIG--GVYDGWVPIKGNDWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIE 341 (681)
Q Consensus 267 ~~L~~LkeGqIVEGkVtnItdF~GAFVDIG--Gv~DGLVHISEISW~rI~---dVLKVGDeVkVKVLsIdD~eR~RISLS 341 (681)
++-..+++|+++.|+|++|++| ||||+|+ ++.+||||+|+++|.++. +++++||.|.|+|+++ |..++||+||
T Consensus 4 ~~~~~~~vG~iv~G~V~~I~~~-GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkVi~v-d~~~g~I~LS 81 (266)
T 3cw2_C 4 SRSKLPSEGEILIATVKQVFDY-GSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRV-DRRKGTVDVS 81 (266)
T ss_dssp CSSSSCCTTCEEEEEEEECCSS-SBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEECCC-CSSSCCCBEE
T ss_pred cccccCCCCCEEEEEEEEEecc-EEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEEEEE-eCCCCEEEEE
Confidence 5556789999999999999999 9999997 668999999999998765 5999999999999999 7788999999
Q ss_pred eeccCCCccccccccCCCCCccc
Q 005716 342 MRFVQPNIDHLIFNRFDFAPIFH 364 (681)
Q Consensus 342 LK~~~pnPW~~I~erf~vgpI~~ 364 (681)
||.+.++||..+.++|+.+..++
T Consensus 82 lk~~~~~~~~~~~~~~~~~~~~~ 104 (266)
T 3cw2_C 82 LKKVTDDERRKKNLQWKKIQRLD 104 (266)
T ss_dssp STTSCTTHHHHHHHHHHHHHHHH
T ss_pred EEecchhhHHHHHHhccccCccc
Confidence 99999999999999999887776
No 14
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=99.73 E-value=1.2e-18 Score=192.15 Aligned_cols=92 Identities=37% Similarity=0.526 Sum_probs=85.2
Q ss_pred CCCCCCCcc----hhhhcccCCCCCCCCEEEEEEEEeeecceeEEEcCCceeeeeEcccccccccc---cccccCCEEEE
Q 005716 253 PGRRKRGKD----YEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIR---HHIKVGMHVIV 325 (681)
Q Consensus 253 PGRDPR~~~----f~egv~~L~~LkeGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~rI~---dVLKVGDeVkV 325 (681)
||||||.+. |.+++.++.++++|++++|+|++|++| ||||+||.+.+||||||+|+|.++. +++++||.|+|
T Consensus 629 pg~d~R~~~~~~~~~~~ve~~~~l~vG~iv~G~V~~V~~f-GaFV~l~~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~V 707 (785)
T 3bzc_A 629 PGRDPRPEFKTAEFQEGVESLKDLKPGMVLEGVVTNVTNF-GAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKV 707 (785)
T ss_dssp TTCCCSCCCCTTTTCCCCCSSTTCCTTCBCCCEEEEEETT-EEEEECSSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCC
T ss_pred cCCChhhhcccchhhhcccchhhcCCCCEEEEEEEEEecC-CeEEEeCCCcEEEEEHHHcCccccCChhheeCCCCEEEE
Confidence 899999973 778999999999999999999999999 9999999888999999999998775 49999999999
Q ss_pred EEEEeeCCCCCeeeeeeeccC
Q 005716 326 EILAKRDPYRFRFPIEMRFVQ 346 (681)
Q Consensus 326 KVLsIdD~eR~RISLSLK~~~ 346 (681)
+|++| |..++||+||||...
T Consensus 708 kVi~V-D~~~~rI~LSlk~~~ 727 (785)
T 3bzc_A 708 KVMEV-DIPRNRVGLSMRMSD 727 (785)
T ss_dssp BEEEE-ETTTTEEEECCSSCC
T ss_pred EEEEE-ECCCCEEEEEEecCC
Confidence 99999 788999999999544
No 15
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.72 E-value=8e-18 Score=143.37 Aligned_cols=77 Identities=21% Similarity=0.266 Sum_probs=69.8
Q ss_pred CCCCCCCCEEEEEEEEeeecceeEEEcCCceeeeeEccccccccc---ccccccCCEEEEEEEEeeCCCCCeeeeeeecc
Q 005716 269 LPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWI---RHHIKVGMHVIVEILAKRDPYRFRFPIEMRFV 345 (681)
Q Consensus 269 L~~LkeGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~rI---~dVLKVGDeVkVKVLsIdD~eR~RISLSLK~~ 345 (681)
+..+++|+++.|+|++|++| ||||+|+++.+||||+|+++|.++ .+++++||.|+|+|+++ |..+.||.||+|.+
T Consensus 26 ~~~~~~G~iv~G~V~~v~~~-G~fV~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~v-d~~~~ki~LS~k~~ 103 (109)
T 2khj_A 26 VALNKKGAIVTGKVTAVDAK-GATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGV-DRKNRAISLSVRAK 103 (109)
T ss_dssp TTTCCSSSEEEEEEEEECSS-CEEEECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEE-ETTTTEEEEETTSS
T ss_pred hhcCCCCCEEEEEEEEEECC-eEEEEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEE-ECCCCEEEEEEeec
Confidence 36789999999999999999 999999977799999999999765 45999999999999999 67778999999988
Q ss_pred CC
Q 005716 346 QP 347 (681)
Q Consensus 346 ~p 347 (681)
.+
T Consensus 104 ~~ 105 (109)
T 2khj_A 104 DE 105 (109)
T ss_dssp SS
T ss_pred Ch
Confidence 65
No 16
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=99.72 E-value=5.9e-19 Score=199.05 Aligned_cols=93 Identities=9% Similarity=-0.039 Sum_probs=14.5
Q ss_pred CCCCCCCCcc----hhhhc-----ccCCCCCCCCEEEEEEEEeeecceeEEEcCCceeeeeEcccccccc-c---ccccc
Q 005716 252 YPGRRKRGKD----YEEGM-----YELPFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYW-I---RHHIK 318 (681)
Q Consensus 252 ~PGRDPR~~~----f~egv-----~~L~~LkeGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~r-I---~dVLK 318 (681)
.||||||... |.+++ .++.+|++|++|+|+|++|++| ||||+|+++.+||||||+|||.+ + .++|+
T Consensus 874 ~P~~D~R~~f~~~~~~e~~~~LTget~~~l~~G~iv~G~V~~V~~f-GaFV~L~~gveGLVHiSelsd~~~v~~~~~v~k 952 (1030)
T 3psf_A 874 DGFEELRNDFHPLQGDEIFQSLTGESEKTFFKGSIIPVRVERFWHN-DIICTTNSEVECVVNAQRHAGAQLRRPANEIYE 952 (1030)
T ss_dssp STTCCCSCCCCCCCHHHHHHHHHCCC------------------------------------------------------
T ss_pred ccCCCCCcccCccchhhhhhhhccccHHHhcCCCEEEEEEEEEccC-eEEEEeCCCcEEEEEHHHcCCCcccCCHHHcCC
Confidence 4899999984 88888 7899999999999999999999 99999987789999999999976 4 46999
Q ss_pred cCCEEEEEEEEeeCCCCCeeeeeeeccC
Q 005716 319 VGMHVIVEILAKRDPYRFRFPIEMRFVQ 346 (681)
Q Consensus 319 VGDeVkVKVLsIdD~eR~RISLSLK~~~ 346 (681)
+||+|+|+|++| |..++||+||||...
T Consensus 953 vGd~V~vkVl~V-D~~~~rI~LSlk~~d 979 (1030)
T 3psf_A 953 IGKTYPAKVIYI-DYANITAEVSLLDHD 979 (1030)
T ss_dssp ----------------------------
T ss_pred CCCEEEEEEEEE-ECCCCEEEEEechHH
Confidence 999999999999 788999999999643
No 17
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.61 E-value=3.6e-17 Score=179.83 Aligned_cols=86 Identities=21% Similarity=0.124 Sum_probs=37.5
Q ss_pred CCCCCCCEEEEEEEEeeecceeEEEcCCceeeeeEcccc----cccccc---cccccCCEEEEEEEEeeCCCCCeeeeee
Q 005716 270 PFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGN----DWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEM 342 (681)
Q Consensus 270 ~~LkeGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEI----SW~rI~---dVLKVGDeVkVKVLsIdD~eR~RISLSL 342 (681)
..+++|++++|+|++|++| ||||+|.++.+||||||+| +|.++. +++++||+|+|+|++| |+ ++||+|||
T Consensus 663 ~~~~vG~i~~G~V~~i~~f-GaFV~l~~g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~v-d~-~grI~LS~ 739 (757)
T 1e3p_A 663 TSPEVGERILGSVVKTTTF-GAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEI-DS-RGKLSLIP 739 (757)
T ss_dssp ----------CBEEECC-C-SCEECCC---CCCCC-------------------CCSSCBCCCCCCCC-CS-SCC-----
T ss_pred hhcccccEEEEEEEEcccc-EEEEEEcCCcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEE-CC-CCCEEEEE
Confidence 4678999999999999999 9999997667999999999 998765 5999999999999999 55 89999999
Q ss_pred eccCCCccccccccCC
Q 005716 343 RFVQPNIDHLIFNRFD 358 (681)
Q Consensus 343 K~~~pnPW~~I~erf~ 358 (681)
|.+.++||.....+|+
T Consensus 740 k~~~~~pw~~~~~~~~ 755 (757)
T 1e3p_A 740 VIEGEEAASDEKKDDA 755 (757)
T ss_dssp ----------------
T ss_pred ecCCCCchhhhhhccc
Confidence 9999999999887775
No 18
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.60 E-value=1.2e-15 Score=131.81 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=66.4
Q ss_pred hhcccCCCCCCCCEEEEEEEEeeecceeEEEcC-CceeeeeEcccc--cccc---cccccccCCEEEEEEEEeeCCCCCe
Q 005716 264 EGMYELPFYYPGQICEGKVTTVHLYQGAFVDIG-GVYDGWVPIKGN--DWYW---IRHHIKVGMHVIVEILAKRDPYRFR 337 (681)
Q Consensus 264 egv~~L~~LkeGqIVEGkVtnItdF~GAFVDIG-Gv~DGLVHISEI--SW~r---I~dVLKVGDeVkVKVLsIdD~eR~R 337 (681)
.+..++.++++|++++|+|++|++| ||||||| +. .|++|++++ +|.+ +.+++++||.|+|+|+++ |..++|
T Consensus 11 n~~~~~~~l~~G~i~~G~V~~v~~f-G~fV~l~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~v-d~~~~~ 87 (119)
T 1wi5_A 11 NRVLSAEALKPGMLLTGTVSSLEDH-GYLVDIGVDG-TRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKV-KGNGGV 87 (119)
T ss_dssp SCCCCTTTCCTTCEEEEEEEEECSS-EEEEECCCSS-CEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEEC-CTTSCE
T ss_pred hccccHhcCCCCCEEEEEEEEEeCc-eEEEEECCCC-eEEEEEEecccccccccCccCEeCCCCEEEEEEEEE-eCCCCE
Confidence 4456788999999999999999999 9999999 44 455555555 4654 567999999999999999 778889
Q ss_pred eeeeeeccC
Q 005716 338 FPIEMRFVQ 346 (681)
Q Consensus 338 ISLSLK~~~ 346 (681)
|.||||...
T Consensus 88 i~Lslk~~~ 96 (119)
T 1wi5_A 88 VSLSVGHSE 96 (119)
T ss_dssp EEEECCCCC
T ss_pred EEEEEchhh
Confidence 999998653
No 19
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.60 E-value=7e-17 Score=177.07 Aligned_cols=87 Identities=26% Similarity=0.294 Sum_probs=0.0
Q ss_pred CCCCCCCEEEEEEEEeeecceeEEEcCCceeeeeEcccccccccc---cccccCCEEEEEEEEeeCCCCCeeeeeeeccC
Q 005716 270 PFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQ 346 (681)
Q Consensus 270 ~~LkeGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~rI~---dVLKVGDeVkVKVLsIdD~eR~RISLSLK~~~ 346 (681)
..+++|++++|+|++|++| ||||+|+++.+||||||+|+|.++. ++|++||+|+|+|+++ |+ ++||+||||.+.
T Consensus 633 ~~~~vG~v~~G~V~~I~~f-GaFVel~~g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkVi~i-D~-~grI~LS~K~~~ 709 (726)
T 4aid_A 633 DEAEVGKIYDGKVVKVVDF-GAFVNFFGAKDGLVHVSQISNERVAKPSDVLKEGQMVKVKLLGF-DD-RGKTKLSMKVVD 709 (726)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhcCCcEEEEEEEEEecc-EEEEEECCCcEEEEEHHHcCcccccCccccCCCCCEEEEEEEEE-CC-CCcEEEEEeecc
Confidence 5689999999999999999 9999997778999999999998765 5999999999999999 44 789999999999
Q ss_pred CCccccccccCCC
Q 005716 347 PNIDHLIFNRFDF 359 (681)
Q Consensus 347 pnPW~~I~erf~v 359 (681)
++||..+.++.+.
T Consensus 710 ~~~G~~~~~k~~~ 722 (726)
T 4aid_A 710 QETGEDLSKKEAA 722 (726)
T ss_dssp -------------
T ss_pred cCcchhhhhhhhh
Confidence 9999998766543
No 20
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.59 E-value=1.4e-15 Score=150.45 Aligned_cols=100 Identities=10% Similarity=0.077 Sum_probs=81.1
Q ss_pred CCCCCCCEEEEEEEEeeecceeEE-EcCCceeeeeEcccccccccccccccCCEEEEEEEEeeCCCCCeeeeeeeccCCC
Q 005716 270 PFYYPGQICEGKVTTVHLYQGAFV-DIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPN 348 (681)
Q Consensus 270 ~~LkeGqIVEGkVtnItdF~GAFV-DIGGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsIdD~eR~RISLSLK~~~pn 348 (681)
..+++|++|+|+|++|++| |||| +|+++++||||+||++ +.+++||+|+|+|++| +++++||+||||.+...
T Consensus 148 ~~~~~G~~V~g~V~~i~~~-G~fV~~i~~g~~Glih~SEl~-----~~l~~Gd~v~~~V~~i-d~~d~kI~LSlk~~~~~ 220 (285)
T 3go5_A 148 YNNMQNQNWPAIVYRLKLS-GTFVYLPENNMLGFIHPSERY-----AEPRLGQVLDARVIGF-REVDRTLNLSLKPRSFE 220 (285)
T ss_dssp CSCCTTCEEEEEEEEEETT-EEEEEETTTTEEEEECGGGCS-----SCCCTTCEEEEEEEEE-ETTTTEEEEECSCCCCC
T ss_pred hhCCCCCEEEEEEEEEeCC-cEEEEEeCCCeEEEEEHHHcc-----ccCCCCCEEEEEEEEE-ECCCCeEEEEeChhhhh
Confidence 6788999999999999999 9999 9987789999999998 5799999999999999 67779999999999998
Q ss_pred ccccccccC----C-CCCccccCCCCCchhhhh
Q 005716 349 IDHLIFNRF----D-FAPIFHRDEDKNPDELRR 376 (681)
Q Consensus 349 PW~~I~erf----~-vgpI~~r~~d~n~geV~R 376 (681)
+++...+.. . .+-.....-..+|+++++
T Consensus 221 ~~~~~a~~il~~L~~~~G~l~~~DkS~pe~I~~ 253 (285)
T 3go5_A 221 MLENDAQMILTYLESNGGFMTLNDKSSPDDIKA 253 (285)
T ss_dssp CCCHHHHHHHHHHHHTTTEESCCTTSCHHHHHH
T ss_pred ccchHHHHHHHHHHhcCCeeccCCCCCHHHHHH
Confidence 888744332 1 122333334456666665
No 21
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.57 E-value=2e-16 Score=173.11 Aligned_cols=82 Identities=26% Similarity=0.327 Sum_probs=0.0
Q ss_pred CCCCCCCEEEEEEEEeeecceeEEEcCCceeeeeEcccccccccc---cccccCCEEEEEEEEeeCCCCCeeeeeeeccC
Q 005716 270 PFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIR---HHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQ 346 (681)
Q Consensus 270 ~~LkeGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~rI~---dVLKVGDeVkVKVLsIdD~eR~RISLSLK~~~ 346 (681)
..+++|++++|+|++|++| ||||+|+++.+||||||+|+|.++. +++++||+|+|+|+++ |. ++||+||||.+.
T Consensus 623 ~~~~vG~i~~G~V~~i~~f-GaFVel~~g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkVi~v-d~-~grI~LS~k~~~ 699 (723)
T 3cdi_A 623 AEIEVGRVYTGKVTRIVDF-GAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEV-DR-QGRIRLSIKEAT 699 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhcCcEEEEEEEEEecc-eEEEEeCCCceEEEEHHHcCCccccCcccccCCCCEEEEEEEEE-CC-CCcEEEEEEecc
Confidence 5789999999999999999 9999997678999999999998765 5999999999999999 45 899999999999
Q ss_pred CCcccccc
Q 005716 347 PNIDHLIF 354 (681)
Q Consensus 347 pnPW~~I~ 354 (681)
++||....
T Consensus 700 ~~~g~~~~ 707 (723)
T 3cdi_A 700 EQSQPAAA 707 (723)
T ss_dssp --------
T ss_pred CCCCcccC
Confidence 99998753
No 22
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=99.55 E-value=7.6e-15 Score=134.39 Aligned_cols=79 Identities=20% Similarity=0.210 Sum_probs=67.0
Q ss_pred CCCCCCEEEEEEEEeeecceeEEEcCCceeeeeEccccccccc--------------ccccccCCEEEEEEEEeeCCC--
Q 005716 271 FYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWI--------------RHHIKVGMHVIVEILAKRDPY-- 334 (681)
Q Consensus 271 ~LkeGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~rI--------------~dVLKVGDeVkVKVLsIdD~e-- 334 (681)
...+|+++.|+|++|++| ||||+||. .+||||+|++++.++ .+++++||.|+|+|++++...
T Consensus 78 ~~~~Gev~~G~V~~v~~~-G~fV~l~~-~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~ 155 (187)
T 1go3_E 78 IPEMYELIEGEVVDVVEF-GSFVRLGP-LDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAER 155 (187)
T ss_dssp CCCTTCEEEEEEEEEETT-EEEEECSS-SEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC--
T ss_pred ccCCCCEEEEEEEEEeCc-EEEEEEcC-ccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccCC
Confidence 468999999999999999 99999987 699999999997654 469999999999999995332
Q ss_pred --CCeeeeeeeccCCCccc
Q 005716 335 --RFRFPIEMRFVQPNIDH 351 (681)
Q Consensus 335 --R~RISLSLK~~~pnPW~ 351 (681)
..||+||||...-+|+.
T Consensus 156 p~~~~I~lS~k~~~LG~~~ 174 (187)
T 1go3_E 156 KRGSKIALTMRQPYLGKLE 174 (187)
T ss_dssp ---CEEEEECCSTTCEEHH
T ss_pred CCccEEEEEEcCCCCCcHH
Confidence 35999999996655544
No 23
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=99.52 E-value=1.7e-14 Score=131.71 Aligned_cols=77 Identities=25% Similarity=0.293 Sum_probs=64.1
Q ss_pred CCCCCCEEEEEEEEeeecceeEEEcCCceeeeeEccccccccc--------------ccccccCCEEEEEEEEeeCC---
Q 005716 271 FYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWI--------------RHHIKVGMHVIVEILAKRDP--- 333 (681)
Q Consensus 271 ~LkeGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~rI--------------~dVLKVGDeVkVKVLsIdD~--- 333 (681)
...+|++++|+|++|++| ||||++|. .+||||+|+|++.++ .+++++||+|+|+|++++..
T Consensus 78 ~p~~Gev~~G~V~~v~~~-G~fv~l~~-~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~~ 155 (180)
T 4ayb_E 78 VPVVQEVVEGEVLQVDNY-GVFVNLGP-MDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTG 155 (180)
T ss_dssp CCCTTCEEEEEEEEEETT-EEEEECSS-SEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC----
T ss_pred eccCCCEEEEEEeeeccc-eEEEEECC-ccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCCc
Confidence 467999999999999999 99999997 599999999988654 34999999999999999532
Q ss_pred CCCeeeeeeeccCCCc
Q 005716 334 YRFRFPIEMRFVQPNI 349 (681)
Q Consensus 334 eR~RISLSLK~~~pnP 349 (681)
...||+||||+..-+|
T Consensus 156 ~~~rI~ls~k~~gLG~ 171 (180)
T 4ayb_E 156 RLPRIALTMRQPYLGK 171 (180)
T ss_dssp ---CEEEECCSTTCEE
T ss_pred ccCcEEEEcCCCCCCC
Confidence 3569999999855544
No 24
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=99.50 E-value=2.1e-14 Score=137.57 Aligned_cols=84 Identities=13% Similarity=0.036 Sum_probs=65.7
Q ss_pred CCCCCEEEEEEEEeeecceeEEEcCCceeeeeEcccccccc----c---------ccccccCCEEEEEEEEeeCCCC---
Q 005716 272 YYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYW----I---------RHHIKVGMHVIVEILAKRDPYR--- 335 (681)
Q Consensus 272 LkeGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~r----I---------~dVLKVGDeVkVKVLsIdD~eR--- 335 (681)
-++|++++|+|++|++| ||||+||. .|||||||+|+... . .+++++||+|+|+|+++ |..+
T Consensus 81 p~vGev~~G~V~~vt~f-G~FVelg~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~v-d~~~~~i 157 (215)
T 2b8k_G 81 PFKGEVVDGTVVSCSQH-GFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGC-ISQVSSI 157 (215)
T ss_dssp CCTTEEEEEEEEEEETT-EEEEECTT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEEEE-EEETTEE
T ss_pred cCCCCEEEEEEEEEecc-eEEEEecC-cEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEEEE-EcCCCcc
Confidence 37999999999999999 99999998 79999999997531 1 25799999999999999 4443
Q ss_pred CeeeeeeeccCCCccccccccCCC
Q 005716 336 FRFPIEMRFVQPNIDHLIFNRFDF 359 (681)
Q Consensus 336 ~RISLSLK~~~pnPW~~I~erf~v 359 (681)
.||+ |||...-+||..+..|.+-
T Consensus 158 ~~Ig-Smk~~~LG~~~~~~~~~~~ 180 (215)
T 2b8k_G 158 HAIG-SIKEDYLGAISHEKRRWKK 180 (215)
T ss_dssp EEEE-ECCSTTCEEC---------
T ss_pred EEEE-EcCCCCCCCcchhhHHHHh
Confidence 5999 9999999999876665543
No 25
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=99.46 E-value=6.5e-14 Score=127.69 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=57.6
Q ss_pred CCCCEEEEEEEEeeecceeEEEcCCceeeeeEcccccccc----c---------ccccccCCEEEEEEEEeeCCCC---C
Q 005716 273 YPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYW----I---------RHHIKVGMHVIVEILAKRDPYR---F 336 (681)
Q Consensus 273 keGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~r----I---------~dVLKVGDeVkVKVLsIdD~eR---~ 336 (681)
.+|++++|+|++|++| ||||+||. .|||||||+|++.. . .+++++||+|+|+|++++ .++ .
T Consensus 82 ~~Gev~~G~V~~v~~f-G~FV~l~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd-~~~~~~~ 158 (171)
T 1y14_B 82 FKGEVVDGTVVSCSQH-GFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCI-SQVSSIH 158 (171)
T ss_dssp CTTCEEEEEEEEEETT-EEEEEETT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEE-EETTEEE
T ss_pred CCCCEEEEEEEEEecC-EEEEEecC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEE-cCCCCcE
Confidence 5899999999999999 99999998 79999999997431 1 268999999999999994 433 6
Q ss_pred eeeeeeec
Q 005716 337 RFPIEMRF 344 (681)
Q Consensus 337 RISLSLK~ 344 (681)
||+ |||.
T Consensus 159 ~ig-sm~~ 165 (171)
T 1y14_B 159 AIG-SIKE 165 (171)
T ss_dssp EEE-ECCS
T ss_pred EEE-EcCC
Confidence 888 8865
No 26
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=99.45 E-value=9.5e-14 Score=132.08 Aligned_cols=74 Identities=14% Similarity=0.048 Sum_probs=64.8
Q ss_pred CCCCCCEEEEEEEEeeecceeEEEcCC--------ceeeeeEccccccccc-----ccccccCCEEEEEEEEeeCCCCCe
Q 005716 271 FYYPGQICEGKVTTVHLYQGAFVDIGG--------VYDGWVPIKGNDWYWI-----RHHIKVGMHVIVEILAKRDPYRFR 337 (681)
Q Consensus 271 ~LkeGqIVEGkVtnItdF~GAFVDIGG--------v~DGLVHISEISW~rI-----~dVLKVGDeVkVKVLsIdD~eR~R 337 (681)
.+++|++|.|+|++|++| ||||||++ ..+|||||||++|.++ +++|++||.|+|+|+++ +..+.+
T Consensus 78 ~p~vGDvV~G~V~~v~~~-~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi-~~~~~~ 155 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSR-FAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISL-GDAQSN 155 (209)
T ss_dssp CCCTTCEEEEEEEEECSS-EEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEE-ETTTTE
T ss_pred CCCCCCEEEEEEEEEECc-eEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEE-eCCCCe
Confidence 579999999999999999 99999862 4589999999998654 56999999999999999 556679
Q ss_pred eeeeeeccC
Q 005716 338 FPIEMRFVQ 346 (681)
Q Consensus 338 ISLSLK~~~ 346 (681)
|+||+|...
T Consensus 156 i~LS~k~~~ 164 (209)
T 2nn6_I 156 YLLTTAENE 164 (209)
T ss_dssp EEEECCSSS
T ss_pred EEEEEecCC
Confidence 999998754
No 27
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=99.45 E-value=9e-14 Score=126.37 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=57.6
Q ss_pred CCCCEEEEEEEEeeecceeEEEcCCceeeeeEccccccc----cc-----------ccccccCCEEEEEEEEeeCCCC--
Q 005716 273 YPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWY----WI-----------RHHIKVGMHVIVEILAKRDPYR-- 335 (681)
Q Consensus 273 keGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~----rI-----------~dVLKVGDeVkVKVLsIdD~eR-- 335 (681)
.+|++++|+|++|++| ||||+||.. +||||||+|++. .. .+++++||+|+|+|+++ |..+
T Consensus 80 ~~Gev~~G~V~~v~~f-G~fV~l~~~-~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~v-d~~~~~ 156 (172)
T 2c35_B 80 FKGEVVDAVVTQVNKV-GLFTEIGPM-SCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGT-RVDKND 156 (172)
T ss_dssp CTTCEEEEEEEEEETT-EEEEEETTE-EEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEE-EEETTE
T ss_pred CCCCEEEEEEEEEeCC-EEEEEECCE-EEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEE-EcCCCC
Confidence 5899999999999999 999999865 799999999742 11 33899999999999999 4443
Q ss_pred -Ceeeeeeecc
Q 005716 336 -FRFPIEMRFV 345 (681)
Q Consensus 336 -~RISLSLK~~ 345 (681)
.||+ |||..
T Consensus 157 ~~~ig-sm~~~ 166 (172)
T 2c35_B 157 IFAIG-SLMDD 166 (172)
T ss_dssp EEEEE-ECCST
T ss_pred cEEEE-EecCC
Confidence 3888 88763
No 28
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=99.41 E-value=2.6e-13 Score=125.62 Aligned_cols=66 Identities=9% Similarity=0.096 Sum_probs=60.1
Q ss_pred CCCCCEEEEEEEEeeecceeEEEcCC----------ceeeeeEccccccccc---ccccccCCEEEEEEEEeeCCCCCee
Q 005716 272 YYPGQICEGKVTTVHLYQGAFVDIGG----------VYDGWVPIKGNDWYWI---RHHIKVGMHVIVEILAKRDPYRFRF 338 (681)
Q Consensus 272 LkeGqIVEGkVtnItdF~GAFVDIGG----------v~DGLVHISEISW~rI---~dVLKVGDeVkVKVLsIdD~eR~RI 338 (681)
.+ |++|.|+|++|++| ||||||+. ..+||||||+++|.++ +++|++||.|.|+|++ .+|
T Consensus 56 p~-GdiV~G~V~~V~~~-ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akVi~------~~i 127 (179)
T 3m7n_A 56 VK-GDVVLGRVVDLRNS-IALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARVIG------DNL 127 (179)
T ss_dssp CT-TCEEEEEEEEECSS-EEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEEEE------TTT
T ss_pred CC-CCEEEEEEEEEeCC-cEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEEEC------CeE
Confidence 46 99999999999999 99999987 6899999999999754 5699999999999998 789
Q ss_pred eeeeecc
Q 005716 339 PIEMRFV 345 (681)
Q Consensus 339 SLSLK~~ 345 (681)
+||+|..
T Consensus 128 ~LS~k~~ 134 (179)
T 3m7n_A 128 RLSTKEE 134 (179)
T ss_dssp EEECCST
T ss_pred EEEEecC
Confidence 9999864
No 29
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=99.34 E-value=3.9e-13 Score=123.35 Aligned_cols=70 Identities=24% Similarity=0.318 Sum_probs=58.0
Q ss_pred CCCCCEEEEEEEEeeecceeEEEcCCceeeeeEcccccccc-------------cccccccCCEEEEEEEEeeCCCC--C
Q 005716 272 YYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYW-------------IRHHIKVGMHVIVEILAKRDPYR--F 336 (681)
Q Consensus 272 LkeGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~r-------------I~dVLKVGDeVkVKVLsIdD~eR--~ 336 (681)
-.+|++++|+|++|++| ||||+||.. +||||+|+|++.. ..+++++||+|+|+|++++-..+ .
T Consensus 82 p~~Gev~~G~V~~v~~f-G~FV~l~~~-~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~~~~ 159 (172)
T 3h0g_G 82 PFRGEVVDAIVTTVNKM-GFFANIGPL-NVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATEIF 159 (172)
T ss_dssp CCTTCEEECCCCEEETT-EEECCBTTB-CCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSCEE
T ss_pred cCCCCEEEEEEEEEEcc-eEEEEeCCe-EEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEEEEEECCCCCce
Confidence 46899999999999999 999999975 7999999997532 23599999999999999943332 4
Q ss_pred eeeeeeec
Q 005716 337 RFPIEMRF 344 (681)
Q Consensus 337 RISLSLK~ 344 (681)
+|+ |||+
T Consensus 160 ~Ig-tm~~ 166 (172)
T 3h0g_G 160 AIA-TMKE 166 (172)
T ss_dssp EEE-ECCS
T ss_pred EEE-EcCC
Confidence 777 8774
No 30
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=99.28 E-value=4.1e-12 Score=123.92 Aligned_cols=95 Identities=23% Similarity=0.239 Sum_probs=76.8
Q ss_pred CCCCCCEEEEEEEEeeecceeEEEcCCceeeeeEccccccccc------ccccccCCEEEEEEEEeeCCCCCeeeeeeec
Q 005716 271 FYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWI------RHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344 (681)
Q Consensus 271 ~LkeGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~rI------~dVLKVGDeVkVKVLsIdD~eR~RISLSLK~ 344 (681)
..++|++|.|+|++|++| |||||||+..+|+||||++++.++ +++|++||.|.|+|+++++ . .+++||+|.
T Consensus 71 ~p~~GDiV~G~V~~v~~~-ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~-~-~~i~LS~r~ 147 (251)
T 2je6_I 71 YPKINDIVIGLVEDVEIY-GWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR-S-IDPVLSVKG 147 (251)
T ss_dssp CCCTTCEEEEEEEEECSS-EEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET-T-EEEEEECCS
T ss_pred CCCCCCEEEEEEEEEeCc-eEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECC-C-CcEEEEEcc
Confidence 468999999999999999 999999988899999999997654 4599999999999999954 3 589999975
Q ss_pred cCCCccccccccCCCCCccccCCCCCchhhhhccC
Q 005716 345 VQPNIDHLIFNRFDFAPIFHRDEDKNPDELRRDCG 379 (681)
Q Consensus 345 ~~pnPW~~I~erf~vgpI~~r~~d~n~geV~Rd~G 379 (681)
. -..+..-|-+|. .++.-++|-.|
T Consensus 148 ~-------~lG~L~~G~v~~----vs~~~v~rl~~ 171 (251)
T 2je6_I 148 K-------DLGRVSNGIVID----IMPVKVPRVIG 171 (251)
T ss_dssp T-------TCEECCSSCEEE----CCGGGHHHHHC
T ss_pred c-------cCCcccCCEEEE----ECHHHhHHHhc
Confidence 3 223344466665 66677777444
No 31
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=99.26 E-value=5.1e-12 Score=121.35 Aligned_cols=92 Identities=17% Similarity=0.165 Sum_probs=73.3
Q ss_pred CCCCCCEEEEEEEEeeecceeEEEcCCceeeeeEccccccc-------ccccccccCCEEEEEEEEeeCCCCCeeeeeee
Q 005716 271 FYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWY-------WIRHHIKVGMHVIVEILAKRDPYRFRFPIEMR 343 (681)
Q Consensus 271 ~LkeGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~-------rI~dVLKVGDeVkVKVLsIdD~eR~RISLSLK 343 (681)
..++|++|.|+|++|+++ |||||||+..+|+||+|+++.. .++++|++||.|.++|+++++ . .++.||+|
T Consensus 63 ~p~~GDiV~G~V~~v~~~-~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~-~-~~i~LS~k 139 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIM-NWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK-T-RSPLLTVQ 139 (235)
T ss_dssp CCCTTCCEEEEEEEECSS-EEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT-T-SCEEEECC
T ss_pred CCCCCCEEEEEEEEEeCC-eEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECC-C-CcEEEEEe
Confidence 568999999999999999 9999999888999999999863 345699999999999999953 3 48999997
Q ss_pred ccCCCccccccccCCCCCccccCCCCCchhhhh
Q 005716 344 FVQPNIDHLIFNRFDFAPIFHRDEDKNPDELRR 376 (681)
Q Consensus 344 ~~~pnPW~~I~erf~vgpI~~r~~d~n~geV~R 376 (681)
.. ..++..-|-++. .++.-++|
T Consensus 140 ~~-------~lG~l~gG~vv~----vs~~~~~r 161 (235)
T 2z0s_A 140 GE-------GLGRIVRGKIVE----ISPAKVPR 161 (235)
T ss_dssp SS-------SCEECCSSEEEE----CCGGGSGG
T ss_pred cc-------cCccccCCEEEE----ECHHHhHH
Confidence 43 233334455554 55566666
No 32
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=99.22 E-value=2.1e-11 Score=117.21 Aligned_cols=92 Identities=21% Similarity=0.278 Sum_probs=73.9
Q ss_pred CCCCCCEEEEEEEEeeecceeEEEcCCceeeeeEccccccc----ccccccccCCEEEEEEEEeeCCCCCeeeeeeeccC
Q 005716 271 FYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWY----WIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQ 346 (681)
Q Consensus 271 ~LkeGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~----rI~dVLKVGDeVkVKVLsIdD~eR~RISLSLK~~~ 346 (681)
..++|++|.|+|++|+++ |||||||+..+|+||+|+++.. .++++|++||.|.++|+++++ . .++.||+|...
T Consensus 54 ~p~~GDiV~G~V~~v~~~-~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~-~-~~i~LS~r~~~ 130 (229)
T 2ba0_A 54 TPSVGDVVIGIIREVAAN-GWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP-K-MKVTLTMKDRI 130 (229)
T ss_dssp CCCTTCEEEEEEEEECSS-EEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT-T-CCEEEECCSSS
T ss_pred cCCCCCEEEEEEEEEeCC-eEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECC-C-CcEEEEEcccc
Confidence 468999999999999999 9999999888999999999953 466799999999999999954 3 68999997532
Q ss_pred CCccccccccCCCCCccccCCCCCchhhhh
Q 005716 347 PNIDHLIFNRFDFAPIFHRDEDKNPDELRR 376 (681)
Q Consensus 347 pnPW~~I~erf~vgpI~~r~~d~n~geV~R 376 (681)
- .+..-|-+|. .++..++|
T Consensus 131 l-------G~L~~G~v~~----vs~~~v~r 149 (229)
T 2ba0_A 131 C-------RPIRFGRIVA----INPARVPR 149 (229)
T ss_dssp C-------EEESSSEEEE----CCGGGHHH
T ss_pred C-------CcccCCEEEE----ECHHHhHH
Confidence 2 2223355554 56677777
No 33
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=99.07 E-value=1.8e-10 Score=122.87 Aligned_cols=79 Identities=23% Similarity=0.295 Sum_probs=67.2
Q ss_pred CCCCCCEEEEEEEEeeec-ceeEEEcCCceeeeeEcccccccc------------cccccccCCEEEEEEEEeeCCCCCe
Q 005716 271 FYYPGQICEGKVTTVHLY-QGAFVDIGGVYDGWVPIKGNDWYW------------IRHHIKVGMHVIVEILAKRDPYRFR 337 (681)
Q Consensus 271 ~LkeGqIVEGkVtnItdF-~GAFVDIGGv~DGLVHISEISW~r------------I~dVLKVGDeVkVKVLsIdD~eR~R 337 (681)
...+|.|+.|+|++|.+| +|||||||.+.+||+|+||++|.+ |.++|++||+|.|+|++. +...+.
T Consensus 42 ~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke-~~g~KG 120 (517)
T 2bx2_L 42 EQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKE-ERGNKG 120 (517)
T ss_dssp CCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEEC-CCTTCC
T ss_pred cCCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEee-ccccCC
Confidence 356899999999999998 599999998889999999999865 557899999999999998 677777
Q ss_pred eeeeeeccCCCcc
Q 005716 338 FPIEMRFVQPNID 350 (681)
Q Consensus 338 ISLSLK~~~pnPW 350 (681)
-.||.....++..
T Consensus 121 a~lTt~isl~GRy 133 (517)
T 2bx2_L 121 AALTTFISLAGSY 133 (517)
T ss_dssp CEEESSCCEECSS
T ss_pred ceEEeeEEeccce
Confidence 7777766555533
No 34
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=99.03 E-value=1.1e-10 Score=119.25 Aligned_cols=86 Identities=19% Similarity=0.077 Sum_probs=71.3
Q ss_pred CCCCCEEEEEEEEeeecceeEEEcCCceeeeeEcccccccccccccccCCEEEEEEEEeeCCCCCeeeeeeeccCCCccc
Q 005716 272 YYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPNIDH 351 (681)
Q Consensus 272 LkeGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsIdD~eR~RISLSLK~~~pnPW~ 351 (681)
.++|++|+|+|++|+++ |+|||||+ .+|+||+||++ ..+.+++||+|+|+|+++ ++++++.+|+|-.+.|+.-.
T Consensus 132 ~~~GeIV~G~V~ri~~~-~v~VDlGk-~EgiLp~sE~i---p~E~~~vGD~Vkv~V~~V-~~~~kg~~I~LSRt~p~~lk 205 (344)
T 1hh2_P 132 ELKGTVTTAEVIRVMGE-WADIRIGK-LETRLPKKEWI---PGEEIKAGDLVKVYIIDV-VKTTKGPKILVSRRVPEFVI 205 (344)
T ss_dssp CCTTCEEEEEEEEECSS-EEEEEETT-EEEEEEGGGSC---TTCCCCTTCEEEEEEEEE-EEETTEEEEEEESSSHHHHH
T ss_pred hcCCCEEEEEEEEEecC-cEEEEeCC-eEEEEeHHHcC---CCcCCCCCCEEEEEEEEE-EcCCCCcEEEEEeeccHHHH
Confidence 34899999999999998 99999995 59999999997 668999999999999999 45556566666667777776
Q ss_pred cccccCCCCCccc
Q 005716 352 LIFNRFDFAPIFH 364 (681)
Q Consensus 352 ~I~erf~vgpI~~ 364 (681)
..++ ..+|-|..
T Consensus 206 ~Lfe-lEVPEI~d 217 (344)
T 1hh2_P 206 GLMK-LEIPEVEN 217 (344)
T ss_dssp HHHH-HHCHHHHH
T ss_pred HHHH-hhccccee
Confidence 6655 56677776
No 35
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.94 E-value=4.5e-10 Score=96.08 Aligned_cols=44 Identities=25% Similarity=0.466 Sum_probs=40.6
Q ss_pred CCCCCCCEEEEEEEEeeecceeEEEcCCceeeeeEcccccccccc
Q 005716 270 PFYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIR 314 (681)
Q Consensus 270 ~~LkeGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~rI~ 314 (681)
..|++|++|+|+|++|++| ||||+|.+..+||||||+|+|.++.
T Consensus 57 ~~l~~Ge~V~g~V~~i~~f-G~fv~l~~~~eGlvhis~i~~~~~~ 100 (101)
T 2bh8_A 57 GNPQQGDRVEGKIKSITDF-GIFIGLDGGIDGLVHLSDISWAQAE 100 (101)
T ss_dssp CCCCTTCEEEEEEEECCSE-EEEECTTSCEEEEEEEEEEEECCCC
T ss_pred cCCCCCCEEEEEEEEeCCc-EEEEEcCCCceEEEEHHHCccCcCC
Confidence 6799999999999999999 9999996667999999999998863
No 36
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=98.86 E-value=3.3e-09 Score=114.36 Aligned_cols=68 Identities=12% Similarity=-0.069 Sum_probs=58.7
Q ss_pred CCCC--EEEEEEEEeeecceeEEEc-CCceeeeeEccccc----ccc-----------cccccccCCEEEEEEEEeeCCC
Q 005716 273 YPGQ--ICEGKVTTVHLYQGAFVDI-GGVYDGWVPIKGND----WYW-----------IRHHIKVGMHVIVEILAKRDPY 334 (681)
Q Consensus 273 keGq--IVEGkVtnItdF~GAFVDI-GGv~DGLVHISEIS----W~r-----------I~dVLKVGDeVkVKVLsIdD~e 334 (681)
++|+ +++|+|++|++| |+||.| ..+.+||||||+|+ |.. ...++++||+|+|+|+++ |..
T Consensus 557 ~vGe~~~f~g~V~~V~~~-G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~v-d~~ 634 (644)
T 2id0_A 557 KAGTDTRFAAEIVDISRG-GMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEV-RME 634 (644)
T ss_dssp GTTSCCCEEEEEEEEETT-EEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEE-ETT
T ss_pred ccCCCceEEEEEEEEeCC-ceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEE-eCC
Confidence 5799 999999999999 999999 44569999999995 322 135799999999999999 778
Q ss_pred CCeeeeee
Q 005716 335 RFRFPIEM 342 (681)
Q Consensus 335 R~RISLSL 342 (681)
+.+|.|++
T Consensus 635 ~~~I~~~l 642 (644)
T 2id0_A 635 TRSIIARP 642 (644)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 89999987
No 37
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.81 E-value=2.8e-09 Score=91.19 Aligned_cols=81 Identities=11% Similarity=0.069 Sum_probs=58.9
Q ss_pred CCCCCCEEEEEEEEe---eecceeEEEcC-CceeeeeEcccccccccccccccCCEEEEEEEEeeCCCCCeeeeeeeccC
Q 005716 271 FYYPGQICEGKVTTV---HLYQGAFVDIG-GVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQ 346 (681)
Q Consensus 271 ~LkeGqIVEGkVtnI---tdF~GAFVDIG-Gv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsIdD~eR~RISLSLK~~~ 346 (681)
....++.++|+|+.. ..| | ||... |+.|++||+|.|+|...
T Consensus 10 ~~~~~~~~~G~Vk~fn~~kGf-G-FI~~~~gg~dvfvH~s~l~~~~~--------------------------------- 54 (101)
T 2bh8_A 10 SRLQSGKMTGIVKWFNADKGF-G-FITPDDGSKDVFVHFSAGSSGAA--------------------------------- 54 (101)
T ss_dssp ------CEEEEEEEEEGGGTE-E-EEEESSSSCEEEEECCCSCSSSC---------------------------------
T ss_pred cccccccceeEEEEEECCCCC-E-EEEeCCCCcEEEEEEEEEecCCc---------------------------------
Confidence 345678899999988 788 9 99752 34699999999999763
Q ss_pred CCccccccccCCCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccCccccceeeehhh
Q 005716 347 PNIDHLIFNRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNA 413 (681)
Q Consensus 347 pnPW~~I~erf~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~hP~VegL~hIs~a 413 (681)
+..+...|.++. ++|.+ .++||+|+++.++++||+|||..
T Consensus 55 ------~~~~l~~Ge~V~-------g~V~~--------------i~~fG~fv~l~~~~eGlvhis~i 94 (101)
T 2bh8_A 55 ------VRGNPQQGDRVE-------GKIKS--------------ITDFGIFIGLDGGIDGLVHLSDI 94 (101)
T ss_dssp ------CCCCCCTTCEEE-------EEEEE--------------CCSEEEEECTTSCEEEEEEEEEE
T ss_pred ------cccCCCCCCEEE-------EEEEE--------------eCCcEEEEEcCCCceEEEEHHHC
Confidence 123344556666 55666 67899999999999999999964
No 38
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=98.81 E-value=9.2e-09 Score=96.99 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=49.7
Q ss_pred CCCCEEEEEEEEeeecceeEEEcCCceeeeeEcccccccc----------------------cccccccCCEEEEEEEEe
Q 005716 273 YPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYW----------------------IRHHIKVGMHVIVEILAK 330 (681)
Q Consensus 273 keGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~r----------------------I~dVLKVGDeVkVKVLsI 330 (681)
.+|++++|+|++|++| |+||.||. .+||||+|++.... -..++++||+|+|+|+++
T Consensus 80 ~~GEv~~G~Vs~vt~~-GifV~lg~-~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 157 (203)
T 3ayh_B 80 FRGEVMLGKIKSCSEE-GIRVTISF-FDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESE 157 (203)
T ss_dssp CTTCEEEEEEEEEETT-EEEEECSS-CCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEEEE
T ss_pred CCCCEEEEEEEEEecc-EEEEEEeC-ceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEEEE
Confidence 6799999999999999 99999974 59999999995422 234899999999999999
Q ss_pred e
Q 005716 331 R 331 (681)
Q Consensus 331 d 331 (681)
+
T Consensus 158 ~ 158 (203)
T 3ayh_B 158 D 158 (203)
T ss_dssp E
T ss_pred E
Confidence 5
No 39
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.80 E-value=3.1e-09 Score=107.12 Aligned_cols=117 Identities=14% Similarity=0.062 Sum_probs=81.3
Q ss_pred CCCCCCEEEEEEEEeeecceeEEEcCCceeeeeEccccccc----cc---------ccccccCCEEEEEEEEeeCCCCCe
Q 005716 271 FYYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWY----WI---------RHHIKVGMHVIVEILAKRDPYRFR 337 (681)
Q Consensus 271 ~LkeGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~----rI---------~dVLKVGDeVkVKVLsIdD~eR~R 337 (681)
-.++|++|.|+|++|+.+ |||||||+..+|++|||++++. |. ++.|++||.|.++|+++++ ...
T Consensus 92 ~P~vGDvViG~Vt~V~~~-~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~~--~~~ 168 (308)
T 2nn6_H 92 IGEVGDIVVGRITEVQQK-RWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVFS--DGA 168 (308)
T ss_dssp CCCSSBCCCEEEEEEETT-EEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEET--TTE
T ss_pred CCCCCCEEEEEEEEEeCc-eEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcCC--CCC
Confidence 468999999999999999 9999999888999999999862 22 3589999999999999963 468
Q ss_pred eeeeeeccCCCccccccccCCCCCccccCCCCCchhhhhccCCCCCCCCCCC-CCCCCCcccccCccccceeeehh
Q 005716 338 FPIEMRFVQPNIDHLIFNRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPG-VKPEEEGLLSTHPYVDKLWQIHN 412 (681)
Q Consensus 338 ISLSLK~~~pnPW~~I~erf~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~-~~~efgafve~hP~VegL~hIs~ 412 (681)
++||+|... .++..-|-+|. ++-..+||..-. ....+| +++.-|+-|+++|+-
T Consensus 169 i~LStr~~~-------LGkL~~G~v~~-------------vs~~lv~r~~~~l~~l~~g--~eI~vG~NG~IWi~~ 222 (308)
T 2nn6_H 169 VSLHTRSLK-------YGKLGQGVLVQ-------------VSPSLVKRQKTHFHDLPCG--ASVILGNNGFIWIYP 222 (308)
T ss_dssp EEEECCSST-------TCEECSSCEEE-------------CCTTSCCCSTTCSCCCBTT--BEEEEETTTEEEEEC
T ss_pred EEEEecCcC-------CcccCCeEEEE-------------EChhheechhheEecCCCC--cEEEEeCCCEEEEcC
Confidence 999998411 12222223333 122344443221 111233 667889999999984
No 40
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=98.70 E-value=1.3e-08 Score=111.87 Aligned_cols=66 Identities=14% Similarity=0.023 Sum_probs=50.8
Q ss_pred CEEEEEEEEeeecceeEEEcCC-ceeeeeEccccc----cc------------c----cccccccCCEEEEEEEEeeCCC
Q 005716 276 QICEGKVTTVHLYQGAFVDIGG-VYDGWVPIKGND----WY------------W----IRHHIKVGMHVIVEILAKRDPY 334 (681)
Q Consensus 276 qIVEGkVtnItdF~GAFVDIGG-v~DGLVHISEIS----W~------------r----I~dVLKVGDeVkVKVLsIdD~e 334 (681)
++++|+|++|++| |+||.|.. +.+||||||+|+ |. + ...++++||+|+|+|+++ |.+
T Consensus 671 ~~~~g~V~~V~~~-G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~v-d~~ 748 (760)
T 2vnu_D 671 STETGYVIKVFNN-GIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSV-MDP 748 (760)
T ss_dssp SEEEEEEEEEETT-EEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC------
T ss_pred eEEEEEEEEEECC-eEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEE-ECc
Confidence 6999999999999 99999974 579999999996 31 1 246899999999999999 555
Q ss_pred ---CCeeeeeee
Q 005716 335 ---RFRFPIEMR 343 (681)
Q Consensus 335 ---R~RISLSLK 343 (681)
+.||.||||
T Consensus 749 ~~~~~kI~lslk 760 (760)
T 2vnu_D 749 ITSKRKAELLLK 760 (760)
T ss_dssp ---CCEEEC---
T ss_pred cccCCcEEEEeC
Confidence 689999997
No 41
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=98.69 E-value=1.6e-08 Score=114.28 Aligned_cols=68 Identities=16% Similarity=0.100 Sum_probs=58.1
Q ss_pred CCEEEEEEEEeeecceeEEEcCC-ceeeeeEccccc----c------------cc----cccccccCCEEEEEEEEeeCC
Q 005716 275 GQICEGKVTTVHLYQGAFVDIGG-VYDGWVPIKGND----W------------YW----IRHHIKVGMHVIVEILAKRDP 333 (681)
Q Consensus 275 GqIVEGkVtnItdF~GAFVDIGG-v~DGLVHISEIS----W------------~r----I~dVLKVGDeVkVKVLsIdD~ 333 (681)
|++++|+|++|++| |+||.|.. +.+||||||+|+ | .+ ...++++||+|+|+|++++.+
T Consensus 887 ge~~~g~V~~V~~~-G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~ 965 (977)
T 2wp8_J 887 ESTETGYVIKVFNN-GIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDP 965 (977)
T ss_dssp TCEEEEEEEEECSS-EEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCS
T ss_pred ceEEEEEEEEEcCC-eEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCc
Confidence 89999999999999 99999974 579999999996 3 11 246899999999999999543
Q ss_pred -C-CCeeeeeee
Q 005716 334 -Y-RFRFPIEMR 343 (681)
Q Consensus 334 -e-R~RISLSLK 343 (681)
. +.||+||||
T Consensus 966 ~~~~~kI~Lslk 977 (977)
T 2wp8_J 966 ITSKRKAELLLK 977 (977)
T ss_dssp SSCCCCCCEEEC
T ss_pred ccCCCceEEEeC
Confidence 3 489999997
No 42
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=98.56 E-value=5.5e-08 Score=100.58 Aligned_cols=100 Identities=16% Similarity=0.166 Sum_probs=76.8
Q ss_pred CCCCCEEEEEEEE----eeecceeEEEcCC---ceeeeeEcccccccccccccccCCEEEEEEEEeeCCCCCeeeeeeec
Q 005716 272 YYPGQICEGKVTT----VHLYQGAFVDIGG---VYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344 (681)
Q Consensus 272 LkeGqIVEGkVtn----ItdF~GAFVDIGG---v~DGLVHISEISW~rI~dVLKVGDeVkVKVLsIdD~eR~RISLSLK~ 344 (681)
-++|++|+|+|++ ++++ ++|||||+ +.+|+||.+|+. +.+.+++||.|+|+|++| ++..+..+|.|..
T Consensus 128 ~r~GeIVtG~V~r~~~~v~~~-~v~VdLG~~~~k~EgiLP~~Eqi---P~E~~~~GDrVkvyV~~V-~~~~kgpqI~LSR 202 (366)
T 1k0r_A 128 TREGEIVAGVIQRDSRANARG-LVVVRIGTETKASEGVIPAAEQV---PGESYEHGNRLRCYVVGV-TRGAREPLITLSR 202 (366)
T ss_dssp CCTTCEEEEEEECCHHHHHTT-CEEEEECCSSSCEEEEECGGGSC---TTCCCCTTCEEEEEEEEE-ECCSSSCEEEEES
T ss_pred hcCCCEEEEEEEEccccccCC-eEEEEeCCCccceEEEEcHHHcC---CCccCCCCCEEEEEEEEE-ecCCCccEEEEEe
Confidence 3499999999999 9998 99999997 469999999997 468999999999999999 5566678888888
Q ss_pred cCCCccccccccCCCCCccccCCCCCchhhhhccC
Q 005716 345 VQPNIDHLIFNRFDFAPIFHRDEDKNPDELRRDCG 379 (681)
Q Consensus 345 ~~pnPW~~I~erf~vgpI~~r~~d~n~geV~Rd~G 379 (681)
+.|+.=..+++. .+|-|.. |...---|+|++|
T Consensus 203 T~p~lv~~Lfe~-EVPEI~d--G~VeIk~iARepG 234 (366)
T 1k0r_A 203 THPNLVRKLFSL-EVPEIAD--GSVEIVAVAREAG 234 (366)
T ss_dssp SCHHHHHHHHHH-HCHHHHT--TSEEEEEEEEETT
T ss_pred CChHHHHHHHHh-cchhhcC--CeEEEEEEEecCC
Confidence 888876666543 2344433 2112245667555
No 43
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=98.54 E-value=1.1e-07 Score=91.33 Aligned_cols=58 Identities=16% Similarity=0.182 Sum_probs=48.8
Q ss_pred CCCCEEEEEEEEeeecceeEEEcCCceeeeeEcccccc-----------------cccccccccCCEEEEEEEEee
Q 005716 273 YPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDW-----------------YWIRHHIKVGMHVIVEILAKR 331 (681)
Q Consensus 273 keGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW-----------------~rI~dVLKVGDeVkVKVLsId 331 (681)
.+|++++|+|++|+.| |+||.|.|..+||||+|++.- .+-..++++||.|+|+|++++
T Consensus 80 ~vGEv~~G~Is~Vt~f-GifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~ 154 (218)
T 2ckz_B 80 FLGEIVTGWISKCTAE-GIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREV 154 (218)
T ss_dssp CTTCEEEEEEEEEETT-EEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEccC-cEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEE
Confidence 4699999999999999 999999335699999999932 223448999999999999995
No 44
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.39 E-value=3.3e-08 Score=109.42 Aligned_cols=93 Identities=17% Similarity=0.134 Sum_probs=37.5
Q ss_pred CCCCCCCCEE--EEEEEE--eeecceeEEEcCCceeeeeEcccccccccccccccCCEEEEEEEEeeCCCCCeeeeeeec
Q 005716 269 LPFYYPGQIC--EGKVTT--VHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRF 344 (681)
Q Consensus 269 L~~LkeGqIV--EGkVtn--ItdF~GAFVDIGGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsIdD~eR~RISLSLK~ 344 (681)
++-=+.|+++ .|+|.+ +.+| ||||||+. +|.||||..+|..+... +.+|. .
T Consensus 604 I~~~ki~~vIG~gGk~Ik~I~~~~-G~~IdI~~--dG~v~Is~~~~~~~~~a------------------~~~i~----~ 658 (757)
T 1e3p_A 604 IPVDKIGEVIGPKRQMINQIQEDT-GAEITIED--DGTIYIGAADGPAAEAA------------------RATIN----G 658 (757)
T ss_dssp -----------------CTTCCCC-CSCC----------CCCBSSHHHHCC-----------------------------
T ss_pred EChHHeehcccccceeeehhhHhh-CCEEEecC--CceEEEecCCHHHHHHH------------------HHHHH----H
Confidence 3444455555 367777 6787 99999995 99999999999876542 11111 1
Q ss_pred cCCCccccccccCCCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccCccccceeeehhh
Q 005716 345 VQPNIDHLIFNRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNA 413 (681)
Q Consensus 345 ~~pnPW~~I~erf~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~hP~VegL~hIs~a 413 (681)
+ .+| ..+.+|.|+. |+|.+ +++||+||++.|+++||+|||..
T Consensus 659 i-~~p-----~~~~vG~i~~-------G~V~~--------------i~~fGaFV~l~~g~eGLvHiSel 700 (757)
T 1e3p_A 659 I-ANP-----TSPEVGERIL-------GSVVK--------------TTTFGAFVSLLPGKDGLLHISQI 700 (757)
T ss_dssp ---------------------------CBEEE--------------CC-CSCEECCC---CCCCC----
T ss_pred h-cch-----hhcccccEEE-------EEEEE--------------ccccEEEEEEcCCcEEEEEhHHh
Confidence 1 134 5678899999 99999 99999999999999999999975
No 45
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=98.25 E-value=2.4e-06 Score=80.17 Aligned_cols=98 Identities=12% Similarity=-0.068 Sum_probs=72.4
Q ss_pred CCCCCEEEEEEEEeeecceeEEEcCC-ceeeeeEccccc--ccccccccccCCEEEEEEEEeeCCCCCeeeeeeecc--C
Q 005716 272 YYPGQICEGKVTTVHLYQGAFVDIGG-VYDGWVPIKGND--WYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFV--Q 346 (681)
Q Consensus 272 LkeGqIVEGkVtnItdF~GAFVDIGG-v~DGLVHISEIS--W~rI~dVLKVGDeVkVKVLsIdD~eR~RISLSLK~~--~ 346 (681)
-++|++|.|+|+.+..+ +++||||. -.+|++|+|.+. -++.+..|++||.|.++|+++. .. ..+.|+..+. .
T Consensus 5 P~~gDvViG~V~~v~~~-~~~VdI~~~~~~a~L~~s~~~g~~k~~r~~l~~GDlV~ArV~~~~-~~-~~~~Ltc~~~~~~ 81 (175)
T 2ja9_A 5 PSVNDFVIGVIIGTFSD-SYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLVYARVCTAE-KE-LEAEIECFDSTTG 81 (175)
T ss_dssp CCTTCEEEEEEEEECSS-EEEEESSTTSCCEEEETTSSTTCCSSSCCCCCTTCEEEEEEEECC-TT-SCCEEESSCTTTC
T ss_pred CCCcCEEEEEEEEEECc-EEEEEECCCCccEEEEHHHCCchhhhhhccCCCCCEEEEEEEEec-CC-CceEEEecccccc
Confidence 36899999999999998 99999999 689999999885 2356679999999999999994 32 5788984321 1
Q ss_pred CCccccccccCCCCCccccCCCCCchhhhhccC
Q 005716 347 PNIDHLIFNRFDFAPIFHRDEDKNPDELRRDCG 379 (681)
Q Consensus 347 pnPW~~I~erf~vgpI~~r~~d~n~geV~Rd~G 379 (681)
.. .-.++..-|-+|. .++.-++|-.|
T Consensus 82 r~---~~lG~L~~G~l~~----v~~~~v~rl~~ 107 (175)
T 2ja9_A 82 RD---AGFGILEDGMIID----VNLNFARQLLF 107 (175)
T ss_dssp SC---TTCEEECSCEEEE----CCHHHHHHHHH
T ss_pred cc---cCCcCcCCCEEEE----EcHHHhhHHhc
Confidence 11 1223344466666 66777777444
No 46
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=98.05 E-value=7.2e-06 Score=81.52 Aligned_cols=67 Identities=15% Similarity=0.129 Sum_probs=57.5
Q ss_pred CCCCEEEEEEEE----eeecceeEEEcCC---ceeeeeEcccccccccccccccCCEEEEEEEEeeCCCC-Ceeeeeee
Q 005716 273 YPGQICEGKVTT----VHLYQGAFVDIGG---VYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYR-FRFPIEMR 343 (681)
Q Consensus 273 keGqIVEGkVtn----ItdF~GAFVDIGG---v~DGLVHISEISW~rI~dVLKVGDeVkVKVLsIdD~eR-~RISLSLK 343 (681)
++|++|+|+|.+ +..- ++|||||. +.+|+|+.+|+. ..+.+++||.|+|+|+++++..+ .+|-||..
T Consensus 6 r~GeIVtG~V~r~~~~v~~~-~ViVdlG~~~~k~EgiLP~~Eqi---p~E~~~~GDrIkayV~~V~~~~~gpqIiLSRt 80 (251)
T 2asb_A 6 REGEIVAGVIQRDSRANARG-LVVVRIGTETKASEGVIPAAEQV---PGESYEHGNRLRCYVVGVTRGAREPLITLSRT 80 (251)
T ss_dssp CTTCEEEEEEECCHHHHHTT-CEEEEECSSSSCEEEEECGGGSC---TTCCCCTTCEEEEEEEEEECCSSSCEEEEESS
T ss_pred cCCCEEEEEEEEccccccCC-eEEEEeCCCCcceEEEEcHHHcC---CCccCCCCCEEEEEEEEEEcCCCCCEEEEEec
Confidence 589999999999 7875 99999997 479999999986 57899999999999999965433 47888874
No 47
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.00 E-value=8.9e-07 Score=75.41 Aligned_cols=54 Identities=6% Similarity=-0.078 Sum_probs=42.1
Q ss_pred eeeeeccCCCccccccccCCCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccCccccceeeehhh
Q 005716 339 PIEMRFVQPNIDHLIFNRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNA 413 (681)
Q Consensus 339 SLSLK~~~pnPW~~I~erf~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~hP~VegL~hIs~a 413 (681)
|-|||++.++||..+...+.+|.|+. |.|.+ ...||+||++.++++||+|++..
T Consensus 11 ~~~iKq~~~~p~~~~~~~~~~G~iv~-------G~V~~--------------v~~~G~fV~l~~~~~Gll~~sel 64 (109)
T 2khj_A 11 SSGLVPRGSHMFNNWVALNKKGAIVT-------GKVTA--------------VDAKGATVELADGVEGYLRASEA 64 (109)
T ss_dssp ----------CHHHHTTTCCSSSEEE-------EEEEE--------------ECSSCEEEECSTTCBCCBCTTCC
T ss_pred ccchhhcccCHHHHHhhcCCCCCEEE-------EEEEE--------------EECCeEEEEECCCCEEEEEHHHc
Confidence 56999999999999999999999999 99999 89999999999999999999864
No 48
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=97.96 E-value=1.1e-06 Score=97.09 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=0.0
Q ss_pred EEEEeee-cceeEEEcCCceeeeeEcccccccccccccccCCEEEEEEEEeeCCCCCeeeeeeeccCCCccccccccCCC
Q 005716 281 KVTTVHL-YQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPNIDHLIFNRFDF 359 (681)
Q Consensus 281 kVtnItd-F~GAFVDIGGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsIdD~eR~RISLSLK~~~pnPW~~I~erf~v 359 (681)
+|+.|+. | ||||||+. +|.||||..+|..+.+... + +..+...+.+
T Consensus 581 ~I~~I~~~~-G~~IdI~~--dg~v~I~~~~~~~~~~a~~------------------~------------i~~i~~~~~v 627 (723)
T 3cdi_A 581 VIRALTEET-GTTIEIED--DGTVKIAATDGEKAKHAIR------------------R------------IEEITAEIEV 627 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeeehhh-CceEEecC--CccEEEecCCHHHHHHHHH------------------H------------HHHHhhhhhc
Confidence 5677754 6 99999995 8999999999877654311 0 1223457889
Q ss_pred CCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccCccccceeeehhh
Q 005716 360 APIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNA 413 (681)
Q Consensus 360 gpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~hP~VegL~hIs~a 413 (681)
|.|+. |+|.+ +++||+||++.|+++||+|||..
T Consensus 628 G~i~~-------G~V~~--------------i~~fGaFVel~~g~eGLvHiSel 660 (723)
T 3cdi_A 628 GRVYT-------GKVTR--------------IVDFGAFVAIGGGKEGLVHISQI 660 (723)
T ss_dssp ------------------------------------------------------
T ss_pred CcEEE-------EEEEE--------------EecceEEEEeCCCceEEEEHHHc
Confidence 99999 99999 99999999999999999999975
No 49
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=97.89 E-value=1.8e-06 Score=74.48 Aligned_cols=53 Identities=8% Similarity=-0.018 Sum_probs=41.2
Q ss_pred eeeeccCCCccccccccCCCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccCccccceeeehhh
Q 005716 340 IEMRFVQPNIDHLIFNRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNA 413 (681)
Q Consensus 340 LSLK~~~pnPW~~I~erf~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~hP~VegL~hIs~a 413 (681)
-|||.+.++||..+..++.+|.|+. |.|.+ .+.||+||++.++++||+|+|..
T Consensus 11 ~~~k~~~~~p~~~~~~~~~~G~~~~-------G~V~~--------------v~~~G~FV~l~~~~~Glvhisel 63 (115)
T 2khi_A 11 SSGLVPRGSHWVAIAKRYPEGTKLT-------GRVTN--------------LTDYGCFVEIEEGVEGLVHVSEM 63 (115)
T ss_dssp ----------CCCSSCSSCSSCEEE-------EEEEE--------------EETTEEEEECSTTCEEEEETTSS
T ss_pred cchhhcccCCHHHHhhcCCCCCEEE-------EEEEE--------------EECCEEEEEECCCCEEEEEHHHC
Confidence 3899999999999999999999999 99999 89999999999999999999975
No 50
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.15 E-value=0.00084 Score=67.50 Aligned_cols=99 Identities=13% Similarity=-0.016 Sum_probs=70.5
Q ss_pred CCCCCEEEEEEEEeeecceeEEEcCCceeeeeEccccc--ccccccccccCCEEEEEEEEeeCCCCCeeeeeeeccCCCc
Q 005716 272 YYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGND--WYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPNI 349 (681)
Q Consensus 272 LkeGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEIS--W~rI~dVLKVGDeVkVKVLsIdD~eR~RISLSLK~~~pnP 349 (681)
-++|++|-|+|+.++.- .+.|||++..+|+||++++. -.+++..|++||.|.++|+++.+ . .-+.||+....-.
T Consensus 125 P~vGDiVIG~Vt~v~~~-~~~VdI~s~~~a~L~~~~f~Gatk~~r~~f~~GDlV~ArV~s~~~-~-~~~eLsc~~~~~k- 200 (289)
T 2nn6_G 125 PVKGDHVIGIVTAKSGD-IFKVDVGGSEPASLSYLSFEGATKRNRPNVQVGDLIYGQFVVANK-D-MEPEMVCIDSCGR- 200 (289)
T ss_dssp CCSSEEEEEEEEEEETT-EEEEECSSSSCCCEESCSSSCCSSCSSSSSCTTCEEEEEEEECCT-T-SCCEEECSBTTTT-
T ss_pred CCCCCEEEEEEEEEeCc-EEEEEECCCceeEEehhhcCcchhhhhhhcCCCCEEEEEEEEcCC-C-CceEEEecccccc-
Confidence 38999999999999986 99999999999999999875 24567899999999999999942 2 3577887331000
Q ss_pred cccccccC-CCCCccccCCCCCchhhhhccC
Q 005716 350 DHLIFNRF-DFAPIFHRDEDKNPDELRRDCG 379 (681)
Q Consensus 350 W~~I~erf-~vgpI~~r~~d~n~geV~Rd~G 379 (681)
..-..+. .-|-+|. .++.-|+|-.|
T Consensus 201 -~~~lG~L~~~G~l~~----Vs~~lvrrl~~ 226 (289)
T 2nn6_G 201 -ANGMGVIGQDGLLFK----VTLGLIRKLLA 226 (289)
T ss_dssp -BCCCCSCCSSCEEEC----CCHHHHHHHHC
T ss_pred -cccCCEecCCeEEEE----EChHHhhhhhc
Confidence 1112333 3344444 66677777333
No 51
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.53 E-value=0.00051 Score=60.13 Aligned_cols=49 Identities=10% Similarity=0.014 Sum_probs=44.0
Q ss_pred ccCCCccccccccCCCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccCc-cccceeeehhh
Q 005716 344 FVQPNIDHLIFNRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHP-YVDKLWQIHNA 413 (681)
Q Consensus 344 ~~~pnPW~~I~erf~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~hP-~VegL~hIs~a 413 (681)
.+.+++|+.+...+.+|.|+. |.|.+ .+.||+||++.. +++||+|||..
T Consensus 7 ~~~~~~~~~~~~~~~vG~iv~-------G~V~~--------------I~~fGaFV~l~g~~~~Glvhisel 56 (119)
T 2cqo_A 7 GMNSGRPETMENLPALYTIFQ-------GEVAM--------------VTDYGAFIKIPGCRKQGLVHRTHM 56 (119)
T ss_dssp CSCCCCCCCSCCSCCTTCEEE-------EEEEE--------------EETTEEEEECTTCSSCEEEEHHHH
T ss_pred cccccchhhhhcccCCCCEEE-------EEEEE--------------EeCceEEEEECCCcEEEEEEHHHC
Confidence 358999999999999999999 99999 899999999944 26999999975
No 52
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=95.78 E-value=0.015 Score=61.16 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=44.8
Q ss_pred CCCCEEEEEEEEeeecceeEEEcCCceeeeeEccccccc-ccccccccCCEEEEEEEEeeCCCCCeeeeee
Q 005716 273 YPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWY-WIRHHIKVGMHVIVEILAKRDPYRFRFPIEM 342 (681)
Q Consensus 273 keGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~-rI~dVLKVGDeVkVKVLsIdD~eR~RISLSL 342 (681)
++|++.+|+|+.+. +. .|||||+++... +....+++||.|+|+|.++ |..+.+|.+.+
T Consensus 402 ~~g~~f~g~vv~l~----------~~-~glV~v~~l~~d~~~~~~~~lGd~V~V~v~~v-d~~~~~i~f~~ 460 (469)
T 2r7d_A 402 QPERVWDAVVVDRR----------GA-QATLLIPDLAFDVQVNTPAAPGTALQVQFADI-DLPQMRVRARS 460 (469)
T ss_dssp CTTCCEEEEEEEEE----------TT-EEEEEEGGGTEEEEEECCCCTTCEEEEEEEEE-ETTTTEEEEEE
T ss_pred CCCCEEEEEEEEEe----------Cc-EEEEEECCCCeEEecCCcCCCCCEEEEEEEEE-ccCCCEEEEEE
Confidence 46888888775432 33 899999999763 4446899999999999999 77778776544
No 53
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=95.76 E-value=0.0012 Score=73.37 Aligned_cols=80 Identities=19% Similarity=0.217 Sum_probs=4.4
Q ss_pred EEEEeeecceeEEEcCCceeeeeEcccccccccccccccCCEEEEEEEEeeCCCCCeeeeeeeccCCCccccccccCCCC
Q 005716 281 KVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPNIDHLIFNRFDFA 360 (681)
Q Consensus 281 kVtnItdF~GAFVDIGGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsIdD~eR~RISLSLK~~~pnPW~~I~erf~vg 360 (681)
+|+.|+.-.||=|||.. ||-|.|+-.+-..+.... ..|..+...+++|
T Consensus 591 ~i~~i~~~tg~~idi~d--dG~v~I~~~~~~~~~~A~------------------------------~~i~~i~~~~~vG 638 (726)
T 4aid_A 591 VIREIVATTGAKVDIND--DGVVKVSASDGAKIKAAI------------------------------DWIKSITDEAEVG 638 (726)
T ss_dssp -------------------------CCSCHHHHHHHH------------------------------HC-----------
T ss_pred hHHHHHHHHCCceeEEC--CceEEEEeCCHHHHHHHH------------------------------HHHHHHhhhhcCC
Confidence 45666554588888762 677766655433222211 1133333468899
Q ss_pred CccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccCccccceeeehhh
Q 005716 361 PIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNA 413 (681)
Q Consensus 361 pI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~hP~VegL~hIs~a 413 (681)
.|+. |+|.+ .++||+||++.|+++||+|||..
T Consensus 639 ~v~~-------G~V~~--------------I~~fGaFVel~~g~eGLvHiSel 670 (726)
T 4aid_A 639 KIYD-------GKVVK--------------VVDFGAFVNFFGAKDGLVHVSQI 670 (726)
T ss_dssp -----------------------------------------------------
T ss_pred cEEE-------EEEEE--------------EeccEEEEEECCCcEEEEEHHHc
Confidence 9999 99999 99999999999999999999975
No 54
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=95.35 E-value=0.0029 Score=59.01 Aligned_cols=40 Identities=8% Similarity=0.120 Sum_probs=34.3
Q ss_pred ccccCC-CCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCccccc--Cccccceeeehhh
Q 005716 353 IFNRFD-FAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLST--HPYVDKLWQIHNA 413 (681)
Q Consensus 353 I~erf~-vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~--hP~VegL~hIs~a 413 (681)
+.++|+ +|.|+. |.|.+ .++||+||++ .++|+||+|||..
T Consensus 8 ~~~~~p~~G~iv~-------G~V~~--------------i~~fGaFV~L~e~~gveGLvhiSel 50 (175)
T 2a19_A 8 YENKYPEIDDIVM-------VNVQQ--------------IAEMGAYVKLLEYDNIEGMILLSEL 50 (175)
T ss_dssp SSSSSCCTTCEEE-------EEEEE--------------EETTEEEEEETTTTTCEEEEECC--
T ss_pred hhhcCCCCCCEEE-------EEEEE--------------EecceEEEEEcCCCCcEEEEEHHHc
Confidence 455677 899999 99999 9999999999 5999999999965
No 55
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=95.22 E-value=0.0041 Score=58.51 Aligned_cols=38 Identities=11% Similarity=0.206 Sum_probs=33.9
Q ss_pred ccC-CCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCccccc--Cccccceeeehhh
Q 005716 355 NRF-DFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLST--HPYVDKLWQIHNA 413 (681)
Q Consensus 355 erf-~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~--hP~VegL~hIs~a 413 (681)
.++ ++|.|+. |.|.+ +++||+||++ .++|+||+|||..
T Consensus 10 ~~~p~~G~iv~-------G~V~~--------------I~~fGaFV~L~e~~g~eGLvhiSel 50 (182)
T 1kl9_A 10 HKFPEVEDVVM-------VNVRS--------------IAEMGAYVSLLEYNNIEGMILLSEL 50 (182)
T ss_dssp SSSCCTTCEEE-------EEEEE--------------ECSSEEEEEETTTTTEEEEEEGGGC
T ss_pred ccCCCCCCEEE-------EEEEE--------------EeccEEEEEEccCCCcEEEEEHHHC
Confidence 445 6799999 99999 9999999999 6999999999965
No 56
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=94.82 E-value=0.0048 Score=54.53 Aligned_cols=39 Identities=8% Similarity=0.201 Sum_probs=35.6
Q ss_pred cccCCCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccCccccceeeehhh
Q 005716 354 FNRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNA 413 (681)
Q Consensus 354 ~erf~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~hP~VegL~hIs~a 413 (681)
...+.+|.|+. |.|.+ .+.||+||.+..+++||+|||..
T Consensus 2 ~~~~~vG~iv~-------G~V~~--------------i~~~G~FV~l~~~~~Glihisel 40 (130)
T 2k4k_A 2 AAKFEVGSVYT-------GKVTG--------------LQAYGAFVALDEETQGLVHISEV 40 (130)
T ss_dssp CCCCCTTCEEE-------EEEEE--------------EETTEEEEEEETTEEEEEEGGGT
T ss_pred CCcCCCCCEEE-------EEEEE--------------EeCCeEEEEECCCcEEEEEHHHC
Confidence 46788999999 99999 89999999999999999999965
No 57
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.45 E-value=0.01 Score=50.32 Aligned_cols=38 Identities=8% Similarity=0.060 Sum_probs=34.0
Q ss_pred ccCCCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccCc---cccceeeehhh
Q 005716 355 NRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHP---YVDKLWQIHNA 413 (681)
Q Consensus 355 erf~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~hP---~VegL~hIs~a 413 (681)
..+.+|.|+. |.|.+ .+.||+||++.. +++||+|||..
T Consensus 8 ~~~~vG~i~~-------G~V~~--------------v~~fG~FV~l~~~~~~~~Glvhisel 48 (103)
T 2eqs_A 8 EEPTIGDIYN-------GKVTS--------------IMQFGCFVQLEGLRKRWEGLVHISEL 48 (103)
T ss_dssp SSCCTTCEEE-------EEEEE--------------ECSSCEEEEECSSSSCCEEEECGGGT
T ss_pred ccCCCCCEEE-------EEEEE--------------EeccEEEEEEcCCCCCeEEEEEHHHC
Confidence 4577899999 99999 899999999985 99999999975
No 58
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=93.93 E-value=0.0084 Score=48.42 Aligned_cols=36 Identities=8% Similarity=0.145 Sum_probs=32.7
Q ss_pred CCCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccCccccceeeehhh
Q 005716 357 FDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNA 413 (681)
Q Consensus 357 f~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~hP~VegL~hIs~a 413 (681)
+++|.|+. |.|.+ .++||+||++.++++||+|+|..
T Consensus 3 ~~~G~iv~-------G~V~~--------------v~~~G~fV~l~~~~~Gllh~sel 38 (80)
T 2k52_A 3 VEPGKFYK-------GVVTR--------------IEKYGAFINLNEQVRGLLRPRDM 38 (80)
T ss_dssp CCTTCEEE-------EEEEE--------------EETTEEEEEEETTEEEEECGGGC
T ss_pred CCCCCEEE-------EEEEE--------------EeCCEEEEEECCCCEEEEEHHHC
Confidence 56788888 99999 88999999999999999999964
No 59
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=92.49 E-value=0.044 Score=50.16 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=32.1
Q ss_pred cCCCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccCccccceeeehhh
Q 005716 356 RFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNA 413 (681)
Q Consensus 356 rf~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~hP~VegL~hIs~a 413 (681)
+..+|.|+. |.|.+ .++||+||++.| ++||+|+|..
T Consensus 78 ~~~~Gev~~-------G~V~~--------------v~~~G~fV~l~~-~eglvhis~l 113 (187)
T 1go3_E 78 IPEMYELIE-------GEVVD--------------VVEFGSFVRLGP-LDGLIHVSQI 113 (187)
T ss_dssp CCCTTCEEE-------EEEEE--------------EETTEEEEECSS-SEEEEEGGGS
T ss_pred ccCCCCEEE-------EEEEE--------------EeCcEEEEEEcC-ccEEEEhHHh
Confidence 456789999 99999 999999999988 9999999963
No 60
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=92.27 E-value=0.7 Score=38.11 Aligned_cols=64 Identities=17% Similarity=0.129 Sum_probs=45.2
Q ss_pred CEEEEEEEEeee---cceeEEEc-CCceeeeeEcccccccccccccccCCEEEEEEEEeeCCCCCeeeeeeeccCCC
Q 005716 276 QICEGKVTTVHL---YQGAFVDI-GGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPN 348 (681)
Q Consensus 276 qIVEGkVtnItd---F~GAFVDI-GGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsIdD~eR~RISLSLK~~~pn 348 (681)
|...|+|+.... | | ||.- +|..| +||+|.|.-.. .|++||.|...|..- + ++.-+..++.+.++
T Consensus 1 M~~~G~Vkwfn~~KGf-G-FI~~~dg~~d-FvH~s~i~~~g---~l~~G~~V~F~~~~g-~--kG~~A~~V~~~~~~ 68 (74)
T 2k5n_A 1 MAMNGTITTWFKDKGF-G-FIKDENGDNR-YFHVIKVANPD---LIKKDAAVTFEPTTN-N--KGLSAYAVKVVPLE 68 (74)
T ss_dssp CCEEEEEEEEETTTTE-E-EEEESSSCEE-EEEGGGBSSGG---GCCTTCEEEEEEEEC-S--SSEEEEEEEECCSS
T ss_pred CCcceEEEEEECCCCe-E-EEecCCCCce-EEEHhHcccCC---CCCCCCEEEEEEEeC-C--CCceeEEEEeCCCc
Confidence 347899999854 5 5 5544 45568 99999997433 899999999998654 2 45666666655443
No 61
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=91.98 E-value=0.39 Score=40.73 Aligned_cols=51 Identities=12% Similarity=-0.098 Sum_probs=44.4
Q ss_pred CCEEEEEEEEeeecceeEEEcCCceeeeeEcccccccc---------cccccccCCEEEEE
Q 005716 275 GQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYW---------IRHHIKVGMHVIVE 326 (681)
Q Consensus 275 GqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~r---------I~dVLKVGDeVkVK 326 (681)
|..+.++|+++.+- +|-|-++++..+-|..+.|.|-+ ..++|++||.|.|.
T Consensus 34 ~~~~~AvV~~v~~~-~~~v~~~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 34 DDILAAVVLSATPG-AVEAFRKNGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp TTCEEEEEEEEETT-EEEEEETTSCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred CCeEEEEEEEeCCC-eEEEEEcCCCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 78899999999996 99999966568889999999964 45689999999998
No 62
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=91.95 E-value=0.029 Score=51.15 Aligned_cols=33 Identities=6% Similarity=-0.046 Sum_probs=30.8
Q ss_pred CCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccCccccceeeehh
Q 005716 358 DFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHN 412 (681)
Q Consensus 358 ~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~hP~VegL~hIs~ 412 (681)
.+|.|+. |.|.+ .++||+||++-| ++||+|+|.
T Consensus 82 ~~Gev~~-------G~V~~--------------v~~fG~FV~l~~-~dglvhis~ 114 (171)
T 1y14_B 82 FKGEVVD-------GTVVS--------------CSQHGFEVQVGP-MKVFVTKHL 114 (171)
T ss_dssp CTTCEEE-------EEEEE--------------EETTEEEEEETT-EEEEEEGGG
T ss_pred CCCCEEE-------EEEEE--------------EecCEEEEEecC-eEEEEEHHH
Confidence 3799999 99999 999999999999 999999994
No 63
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=90.83 E-value=0.052 Score=55.00 Aligned_cols=39 Identities=10% Similarity=0.172 Sum_probs=34.2
Q ss_pred cccCC-CCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccC--ccccceeeehhh
Q 005716 354 FNRFD-FAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTH--PYVDKLWQIHNA 413 (681)
Q Consensus 354 ~erf~-vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~h--P~VegL~hIs~a 413 (681)
..+++ +|.|+. |.|.+ .++||+||++. ++|+||+|||..
T Consensus 7 ~~~~~~vG~iv~-------G~V~~--------------I~~fGaFV~L~ey~gveGLvhiSel 48 (308)
T 1q8k_A 7 QHKFPEVEDVVM-------VNVRS--------------IQEMGAYVSLLEYNNIEGMIHLSEL 48 (308)
T ss_dssp SSCCCSSCCEEE-------EEEEE--------------EETTEEEEESCTTTSCCEEECGGGT
T ss_pred hhcCCCCCCEEE-------EEEEE--------------EeCcEEEEEECCCCCeEEEEEhHHc
Confidence 34455 799999 99999 89999999998 899999999975
No 64
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=90.04 E-value=0.061 Score=53.48 Aligned_cols=38 Identities=11% Similarity=0.180 Sum_probs=33.3
Q ss_pred ccCC-CCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccC--ccccceeeehhh
Q 005716 355 NRFD-FAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTH--PYVDKLWQIHNA 413 (681)
Q Consensus 355 erf~-vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~h--P~VegL~hIs~a 413 (681)
.+++ +|.|+. |.|.+ ..+||+||++. ++++||+|||..
T Consensus 6 ~~~p~~Gdiv~-------G~V~~--------------I~~fGaFV~L~e~~gieGlIhiSel 46 (275)
T 3aev_A 6 REYPEEGEFVV-------ATVKR--------------IHNYGAFLELDEYPGKEAFMHISEV 46 (275)
T ss_dssp -CCCCTTCEEE-------EEEEE--------------EETTEEEEEETTSTTCEEEEEGGGS
T ss_pred ccCCCCCCEEE-------EEEEE--------------EECcEEEEEECCCCCeEEEEEHHHc
Confidence 4455 799999 99999 99999999998 799999999974
No 65
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=89.56 E-value=0.06 Score=51.83 Aligned_cols=33 Identities=6% Similarity=-0.046 Sum_probs=30.9
Q ss_pred CCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccCccccceeeehh
Q 005716 358 DFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHN 412 (681)
Q Consensus 358 ~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~hP~VegL~hIs~ 412 (681)
.+|.|+. |.|.+ .++||+||++-| ++||+|||.
T Consensus 82 ~vGev~~-------G~V~~--------------vt~fG~FVelg~-~dGlVhiS~ 114 (215)
T 2b8k_G 82 FKGEVVD-------GTVVS--------------CSQHGFEVQVGP-MKVFVTKHL 114 (215)
T ss_dssp CTTEEEE-------EEEEE--------------EETTEEEEECTT-SEEEEEGGG
T ss_pred CCCCEEE-------EEEEE--------------EecceEEEEecC-cEEEEEHHH
Confidence 6799999 99999 999999999999 999999994
No 66
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=88.71 E-value=0.13 Score=50.76 Aligned_cols=35 Identities=6% Similarity=0.003 Sum_probs=32.1
Q ss_pred CCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccC--ccccceeeehhh
Q 005716 358 DFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTH--PYVDKLWQIHNA 413 (681)
Q Consensus 358 ~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~h--P~VegL~hIs~a 413 (681)
.+|.|+. |.|.+ ...||+||.+. ++++||+|+|..
T Consensus 10 ~vG~iv~-------G~V~~--------------I~~~GaFV~l~e~~~~~GlihiSel 46 (266)
T 3cw2_C 10 SEGEILI-------ATVKQ--------------VFDYGSYVSLDEYGGLQAFLPWSEV 46 (266)
T ss_dssp CTTCEEE-------EEEEE--------------CCSSSBEEEETTTTSEECBBCGGGS
T ss_pred CCCCEEE-------EEEEE--------------EeccEEEEEEcCCCCeEEEEEhHHc
Confidence 5699999 99999 89999999997 899999999975
No 67
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=88.69 E-value=0.087 Score=43.97 Aligned_cols=21 Identities=5% Similarity=0.042 Sum_probs=18.9
Q ss_pred CCCCCcccccC--ccccceeeeh
Q 005716 391 KPEEEGLLSTH--PYVDKLWQIH 411 (681)
Q Consensus 391 ~~efgafve~h--P~VegL~hIs 411 (681)
.++||+||++. |+++||+|||
T Consensus 21 v~~fG~FVel~~~~~~eGLvhis 43 (88)
T 1luz_A 21 EKDYALYIYLFDYPHFEAILAES 43 (88)
T ss_dssp EETTEEEEEETTCTTSEEEEGGG
T ss_pred EEccEEEEEECCCCCeEEEEEee
Confidence 46899999996 6899999999
No 68
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=88.41 E-value=0.85 Score=38.65 Aligned_cols=60 Identities=13% Similarity=0.035 Sum_probs=45.3
Q ss_pred cccCCCCCCCCEEEEEEEEeee-cceeEEEc-CCceeeeeEcccccccccccccccCCEEEEEEEE
Q 005716 266 MYELPFYYPGQICEGKVTTVHL-YQGAFVDI-GGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILA 329 (681)
Q Consensus 266 v~~L~~LkeGqIVEGkVtnItd-F~GAFVDI-GGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLs 329 (681)
|.-+..-..++.+.|+|+...+ | | ||-- +|+.|=+||+|.|.-. -..|++||.|...|..
T Consensus 7 i~l~~~~~~~~~~~G~Vk~f~kGf-G-FI~~ddgg~DvFvH~S~i~~~--~~~L~~G~~V~F~~~~ 68 (88)
T 2yty_A 7 GRLLGRNSNSKRLLGYVATLKDNF-G-FIETANHDKEIFFHYSEFSGD--VDSLELGDMVEYSLSK 68 (88)
T ss_dssp CSCCCCCSSCCCEEEEEEEECSSE-E-EEECSSSSCEEEEETTTCCSC--TTTCCTTCEEEECCCC
T ss_pred EEEEeccCCCCceeEEEEEEECCc-c-EEecCCCCceEEEEEhhhccc--cCcCCCCCEEEEEEEE
Confidence 4444555578999999999975 4 4 6654 4456999999999754 4789999999988753
No 69
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=88.02 E-value=1.6 Score=40.49 Aligned_cols=71 Identities=14% Similarity=0.071 Sum_probs=48.7
Q ss_pred CCCEEEEEEEEeee---cceeEEEc-CCceeeeeEcccccccccccccccCCEEEEEEEEeeCCCCCeeeeeeeccCCCc
Q 005716 274 PGQICEGKVTTVHL---YQGAFVDI-GGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQPNI 349 (681)
Q Consensus 274 eGqIVEGkVtnItd---F~GAFVDI-GGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsIdD~eR~RISLSLK~~~pnP 349 (681)
.|+.+.|+|+.... | | ||.- +|+.|=+||+|.|.=. ..|++||.|...|....+..++.-+..++.+...|
T Consensus 59 ~g~m~~GtVKwFn~~KGf-G-FI~~ddGg~DVFVH~Sai~~~---~~L~eGq~V~Fev~~~~~~~~g~qA~nV~~~~~~p 133 (147)
T 3aqq_A 59 QGPVYKGVCKCFCRSKGH-G-FITPADGGPDIFLHISDVEGE---YVPVEGDEVTYKMCSIPPKNEKLQAVEVVITHLAP 133 (147)
T ss_dssp HSCCEEEEEEEEETTTTE-E-EEEESSSCSCEEEEGGGEESS---BCCCTTCEEEEEEEEC--CCSCEEEEEEEEEECCS
T ss_pred cCCccceEEEEEeCCCCe-E-EeccCCCCccEEEEeeeecCC---CcCCCCCEEEEEEEeccCCCCCceEEEEEeCCCCC
Confidence 46678999999854 6 5 5543 4546999999999622 38999999999987652344455566665554433
No 70
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=87.67 E-value=0.1 Score=60.21 Aligned_cols=38 Identities=13% Similarity=0.068 Sum_probs=0.0
Q ss_pred ccCCCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccCccccceeeehhh
Q 005716 355 NRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNA 413 (681)
Q Consensus 355 erf~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~hP~VegL~hIs~a 413 (681)
..+++|.|+. |.|.+ .+.||+||.+.+||+||+|||..
T Consensus 901 ~~l~~G~iv~-------G~V~~--------------V~~fGaFV~L~~gveGLVHiSel 938 (1030)
T 3psf_A 901 KTFFKGSIIP-------VRVER--------------FWHNDIICTTNSEVECVVNAQRH 938 (1030)
T ss_dssp -----------------------------------------------------------
T ss_pred HHhcCCCEEE-------EEEEE--------------EccCeEEEEeCCCcEEEEEHHHc
Confidence 4566677777 88988 89999999999999999999964
No 71
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=87.27 E-value=0.14 Score=59.98 Aligned_cols=38 Identities=13% Similarity=0.068 Sum_probs=34.3
Q ss_pred ccCCCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccCccccceeeehhh
Q 005716 355 NRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNA 413 (681)
Q Consensus 355 erf~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~hP~VegL~hIs~a 413 (681)
+.+++|.|+. |.|.+ .+.||+||++.+||+||||||..
T Consensus 898 ~~l~~G~iv~-------G~V~~--------------V~~fGaFV~L~~gveGLVHiSel 935 (1219)
T 3psi_A 898 KTFFKGSIIP-------VRVER--------------FWHNDIICTTNSEVECVVNAQRH 935 (1219)
T ss_dssp TTSCTTCEEE-------EEEEE--------------ECSSCEEEECTTSCEEEECTTSS
T ss_pred hhCCCCCEEE-------EEEEE--------------EecceEEEEeCCCceEEEEHHHc
Confidence 5677888888 99999 89999999999999999999963
No 72
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=86.87 E-value=5.5 Score=33.83 Aligned_cols=68 Identities=13% Similarity=0.137 Sum_probs=47.6
Q ss_pred CCCEEEEEEEEeee-cceeEEEc-CCceeeeeEcccccccccccccccCCEEEEEEEEeeCCCCC-eeeeeeeccCC
Q 005716 274 PGQICEGKVTTVHL-YQGAFVDI-GGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRF-RFPIEMRFVQP 347 (681)
Q Consensus 274 eGqIVEGkVtnItd-F~GAFVDI-GGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsIdD~eR~-RISLSLK~~~p 347 (681)
..+...|+|+.... | | ||.. +|..|=+||+|.|.-. ...|++||.|...|..- ++ .. .-+..++.+.+
T Consensus 15 ~~~~~~G~Vkwf~KGf-G-FI~~ddgg~DVFvH~s~i~~~--~~~L~~G~~V~F~v~~~-~k-~Gk~~A~~V~~~~~ 85 (89)
T 1wfq_A 15 AALRETGVIEKLLTSY-G-FIQCSERQARLFFHCSQYNGN--LQDLKVGDDVEFEVSSD-RR-TGKPIAVKLVKISG 85 (89)
T ss_dssp CCCEEEEEEEEECSSE-E-EEEETTTTEEEEEETTTCSSC--TTTCCTTCCEEEEEEEC-SS-SCCEEEEEEEESSC
T ss_pred cccccceEEEEEeCCe-e-EEecCCCCccEEEEhHHhhCc--cCCCCCCCEEEEEEEEC-CC-CCCcEEEEEEECCc
Confidence 34678999999853 4 4 6655 4446999999999754 46899999999998765 32 13 35666655543
No 73
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=86.40 E-value=0.15 Score=46.48 Aligned_cols=38 Identities=13% Similarity=0.075 Sum_probs=32.7
Q ss_pred cccCCCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccCccccceeeehhh
Q 005716 354 FNRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNA 413 (681)
Q Consensus 354 ~erf~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~hP~VegL~hIs~a 413 (681)
.-+-.+|.|+. |.|.+ .++||+||++.| ++||+|+|..
T Consensus 76 v~~p~~Gev~~-------G~V~~--------------v~~~G~fv~l~~-~~glvh~s~l 113 (180)
T 4ayb_E 76 TYVPVVQEVVE-------GEVLQ--------------VDNYGVFVNLGP-MDGLVHISQI 113 (180)
T ss_dssp EECCCTTCEEE-------EEEEE--------------EETTEEEEECSS-SEEEEEGGGS
T ss_pred eeeccCCCEEE-------EEEee--------------eccceEEEEECC-ccceEEeeec
Confidence 33456799999 99999 999999999987 8999999854
No 74
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=85.74 E-value=0.18 Score=56.85 Aligned_cols=37 Identities=8% Similarity=0.025 Sum_probs=32.1
Q ss_pred cCCCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccCccccceeeehhh
Q 005716 356 RFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNA 413 (681)
Q Consensus 356 rf~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~hP~VegL~hIs~a 413 (681)
.+.+|.||. |.|.+ .+.||+||.+-++++||||||..
T Consensus 651 ~l~vG~iv~-------G~V~~--------------V~~fGaFV~l~~~~eGLVhiS~L 687 (785)
T 3bzc_A 651 DLKPGMVLE-------GVVTN--------------VTNFGAFVDIGVHQDGLVHISAL 687 (785)
T ss_dssp TCCTTCBCC-------CEEEE--------------EETTEEEEECSSSSEEEEETTTS
T ss_pred hcCCCCEEE-------EEEEE--------------EecCCeEEEeCCCcEEEEEHHHc
Confidence 456677777 88888 89999999999999999999864
No 75
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=84.70 E-value=0.27 Score=42.33 Aligned_cols=52 Identities=4% Similarity=-0.118 Sum_probs=36.0
Q ss_pred eeeeeccCCCccccccccCCCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccC-ccccceeeehh
Q 005716 339 PIEMRFVQPNIDHLIFNRFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTH-PYVDKLWQIHN 412 (681)
Q Consensus 339 SLSLK~~~pnPW~~I~erf~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~h-P~VegL~hIs~ 412 (681)
|+||+-..=|-.. -...+.+|.|+. |.|.+ ..+||+||++. +++++|+|.+.
T Consensus 2 ~~sl~P~~vn~~~-~~~~l~~G~i~~-------G~V~~--------------v~~fG~fV~l~~~~~~~l~~~~~ 54 (119)
T 1wi5_A 2 SSGSSGKNVNRVL-SAEALKPGMLLT-------GTVSS--------------LEDHGYLVDIGVDGTRAFLPLLK 54 (119)
T ss_dssp CCCCCCSCSSCCC-CTTTCCTTCEEE-------EEEEE--------------ECSSEEEEECCCSSCEEEEEHHH
T ss_pred ccccCHHHhhccc-cHhcCCCCCEEE-------EEEEE--------------EeCceEEEEECCCCeEEEEEEec
Confidence 3444433333332 235688999999 99999 99999999998 46665555543
No 76
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=84.01 E-value=0.49 Score=42.94 Aligned_cols=32 Identities=6% Similarity=0.038 Sum_probs=29.0
Q ss_pred CCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccCccccceeeehh
Q 005716 359 FAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHN 412 (681)
Q Consensus 359 vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~hP~VegL~hIs~ 412 (681)
+|.++. |.|.+ .++||+||++.| ++||+|||.
T Consensus 81 ~Gev~~-------G~V~~--------------v~~fG~fV~l~~-~~glvhis~ 112 (172)
T 2c35_B 81 KGEVVD-------AVVTQ--------------VNKVGLFTEIGP-MSCFISRHS 112 (172)
T ss_dssp TTCEEE-------EEEEE--------------EETTEEEEEETT-EEEEEEGGG
T ss_pred CCCEEE-------EEEEE--------------EeCCEEEEEECC-EEEEEEHHH
Confidence 799999 99999 999999999965 679999994
No 77
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=83.13 E-value=2.5 Score=40.41 Aligned_cols=58 Identities=12% Similarity=0.284 Sum_probs=41.2
Q ss_pred CCCCCEEEEEEEEeee--cceeEEEcCCceeeeeEcccc--ccc------------ccc-cccccCCEEEEEEEEeeC
Q 005716 272 YYPGQICEGKVTTVHL--YQGAFVDIGGVYDGWVPIKGN--DWY------------WIR-HHIKVGMHVIVEILAKRD 332 (681)
Q Consensus 272 LkeGqIVEGkVtnItd--F~GAFVDIGGv~DGLVHISEI--SW~------------rI~-dVLKVGDeVkVKVLsIdD 332 (681)
=.+|++++|+|+.++. . |+|| +|- .+-.|+...| .|. ++. +--++|++|+++|.+++-
T Consensus 127 Pf~GevL~G~V~~~s~~~I-g~~~-~G~-Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~~~~~ 201 (214)
T 2rf4_A 127 PQVGDVLEGYIFIQSASHI-GLLI-HDA-FNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVRNVHT 201 (214)
T ss_dssp CCTTCEEEEEECCCCSSCE-EEEE-TTT-EEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEEEEEC
T ss_pred cCCCCEEEEEEEEECCCcE-EEEE-eCC-EEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEEEEEEe
Confidence 4679999999999999 4 5554 674 4668888776 221 111 112369999999999953
No 78
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=81.84 E-value=0.36 Score=44.30 Aligned_cols=33 Identities=6% Similarity=-0.045 Sum_probs=29.5
Q ss_pred CCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccCccccceeeehh
Q 005716 358 DFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHN 412 (681)
Q Consensus 358 ~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~hP~VegL~hIs~ 412 (681)
.+|.|+. |.|.+ .++||+||++.| ++||+|+|.
T Consensus 83 ~~Gev~~-------G~V~~--------------v~~fG~FV~l~~-~~glVh~s~ 115 (172)
T 3h0g_G 83 FRGEVVD-------AIVTT--------------VNKMGFFANIGP-LNVFVSSHL 115 (172)
T ss_dssp CTTCEEE-------CCCCE--------------EETTEEECCBTT-BCCEEEGGG
T ss_pred CCCCEEE-------EEEEE--------------EEcceEEEEeCC-eEEEEEHHH
Confidence 4688999 99999 899999999976 789999995
No 79
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=79.44 E-value=5.6 Score=34.12 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=45.5
Q ss_pred CCCEEEEEEEEeee-cceeEEEc-CCceeeeeEcccccccccccccccCCEEEEEEEEeeCCCCCeeeeeeecc
Q 005716 274 PGQICEGKVTTVHL-YQGAFVDI-GGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFV 345 (681)
Q Consensus 274 eGqIVEGkVtnItd-F~GAFVDI-GGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsIdD~eR~RISLSLK~~ 345 (681)
+.+...|+|+...+ | | ||.- +|..|=+||+|.|.-. ...|++||.|...|. +..++.-+..++.+
T Consensus 15 ~~~~~~G~Vkwf~KGf-G-FI~~ddg~~DvFvH~s~i~~~--~~~L~~G~~V~F~v~---~~~~g~~A~~V~~~ 81 (97)
T 2ytx_A 15 KQARCQGVVCAMKEAF-G-FIERGDVVKEIFFHYSEFKGD--LETLQPGDDVEFTIK---DRNGKEVATDVRLL 81 (97)
T ss_dssp CCCCEEEEECCCCSSE-E-EEECSSSCCCEEEETTTCCSC--TTSCCSCCEEEEEEC---CCSSSCBEEEEEEC
T ss_pred CCcceeEEEEEEeCCc-e-EEecCCCCceEEEEehHhccc--cCCCCCCCEEEEEEE---cCCCCcEEEEEEEC
Confidence 45678999999843 4 4 6655 4446999999999754 468999999999884 22334345555544
No 80
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=78.36 E-value=6.6 Score=31.74 Aligned_cols=51 Identities=22% Similarity=0.226 Sum_probs=38.1
Q ss_pred EEEEEEEEeee---cceeEEEc-CCceeeeeEcccccccccccccccCCEEEEEEEEe
Q 005716 277 ICEGKVTTVHL---YQGAFVDI-GGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAK 330 (681)
Q Consensus 277 IVEGkVtnItd---F~GAFVDI-GGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsI 330 (681)
.+.|+|+.... | | ||.- +|..|=+||+|.|.-.- ...|++||.|...|..-
T Consensus 5 ~~~G~Vk~fn~~kGf-G-FI~~~~g~~dvFvH~s~i~~~g-~~~l~~G~~V~f~~~~~ 59 (71)
T 3i2z_B 5 KIKGNVKWFNESKGF-G-FITPEDGSKDVFVHFSAIQTNG-FKTLAEGQRVEFEITNG 59 (71)
T ss_dssp CEEEEEEEEETTTTE-E-EEEETTCCCCEEEEGGGBCCSS-CCCCCTTCEEEEEEEEE
T ss_pred cccEEEEEEECCCCc-E-EEecCCCCccEEEEhHHccccc-CcCCCCCCEEEEEEEEC
Confidence 47899999864 6 6 6654 44468899999997322 24789999999988764
No 81
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=77.32 E-value=0.27 Score=50.73 Aligned_cols=73 Identities=15% Similarity=0.057 Sum_probs=54.3
Q ss_pred ccccccCCEEEEEEEEeeCCCCCeeeeee-eccCC-----CccccccccCC--CCCccccCCCCCchhhhhccCCCCCCC
Q 005716 314 RHHIKVGMHVIVEILAKRDPYRFRFPIEM-RFVQP-----NIDHLIFNRFD--FAPIFHRDEDKNPDELRRDCGRPPVPR 385 (681)
Q Consensus 314 ~dVLKVGDeVkVKVLsIdD~eR~RISLSL-K~~~p-----nPW~~I~erf~--vgpI~~r~~d~n~geV~Rd~GRp~~pr 385 (681)
..-+.+||.|+++|... +.. |+.... |++.- ---+.+.+.|. .|.|+. |+|.|
T Consensus 84 d~~~~vGd~ie~~I~~~-dfg--R~aa~~aKqvi~qkireaere~i~~e~~~~~GeIV~-------G~V~r--------- 144 (344)
T 1hh2_P 84 DPLAEVGSIVKKELNVK-NFG--RIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTT-------AEVIR--------- 144 (344)
T ss_dssp CTTCCTTCEEEEECCCC-CSS--SCSGGGHHHHHHHHHHHHTTCCSSCCTTCCTTCEEE-------EEEEE---------
T ss_pred CccccCCCEEEEEEccc-cCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEE-------EEEEE---------
Confidence 34689999999999887 444 444333 44331 12233567777 699999 99999
Q ss_pred CCCCCCCCCCcccccCccccceeeeh
Q 005716 386 KYPGVKPEEEGLLSTHPYVDKLWQIH 411 (681)
Q Consensus 386 ~~p~~~~efgafve~hP~VegL~hIs 411 (681)
...+|.||.+- ++||++|++
T Consensus 145 -----i~~~~v~VDlG-k~EgiLp~s 164 (344)
T 1hh2_P 145 -----VMGEWADIRIG-KLETRLPKK 164 (344)
T ss_dssp -----ECSSEEEEEET-TEEEEEEGG
T ss_pred -----EecCcEEEEeC-CeEEEEeHH
Confidence 88899999996 999999987
No 82
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=74.69 E-value=1.6 Score=36.39 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=38.7
Q ss_pred CCEEEEEEEEeeecceeEEEcC-C-ceeeeeEcccccccccccccccCCEEEEEEEEe
Q 005716 275 GQICEGKVTTVHLYQGAFVDIG-G-VYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAK 330 (681)
Q Consensus 275 GqIVEGkVtnItdF~GAFVDIG-G-v~DGLVHISEISW~rI~dVLKVGDeVkVKVLsI 330 (681)
++...|+|+.+..=+| ||-.. | +.|=+||+|.|. .. ..|++||.|...|..-
T Consensus 6 ~~~~~G~V~~~~KGfG-FI~~ddg~g~DvFvH~s~i~-~g--~~l~~G~~V~F~v~~~ 59 (79)
T 2ytv_A 6 SGLRRATVECVKDQFG-FINYEVGDSKKLFFHVKEVQ-DG--IELQAGDEVEFSVILN 59 (79)
T ss_dssp CSBCCEEEEECCSSEE-EESCCCSSSSSEEEETTTCC-SS--CCCCTTCEEECBCEEC
T ss_pred CCcccEEEEEecccce-eEeCCCCCCCcEEEEhHHcC-CC--CcCCCCCEEEEEEEEC
Confidence 3567899999864224 66542 3 359999999998 44 6899999999988654
No 83
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=74.22 E-value=15 Score=29.73 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=43.2
Q ss_pred EEEEEEEeeecce-eEEEcCCceeeeeEcccccccccccccccCCEEEEEEEEeeCCCCCeeeeeeecc
Q 005716 278 CEGKVTTVHLYQG-AFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFV 345 (681)
Q Consensus 278 VEGkVtnItdF~G-AFVDIGGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsIdD~eR~RISLSLK~~ 345 (681)
..|+|+....-.| =||.-.++.|=+||+|.|.-.- -..|++||.|...|..- +..++.-+..++.+
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g-~~~l~~G~~V~f~~~~~-~~~kG~~A~~V~~~ 68 (73)
T 3a0j_A 2 QKGRVKWFNAEKGYGFIEREGDTDVFVHYTAINAKG-FRTLNEGDIVTFDVEPG-RNGKGPQAVNVTVV 68 (73)
T ss_dssp EEEEEEEEETTTTEEEEECTTSCCEEEEGGGBCSSS-CSSCCTTCEEEEEEECC-SCCSSSEEEEEEEE
T ss_pred CCEEEEEEECCCCEEEEecCCCCcEEEEhhhccccC-CCCCCCCCEEEEEEEEC-CCCCCCEEEEEEeC
Confidence 4799999875322 3676533369999999996321 24789999999988654 32244455555544
No 84
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=70.29 E-value=13 Score=30.65 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=39.1
Q ss_pred CEEEEEEEEeee---cceeEEEc-CCceeeeeEccccccccc---ccccccCCEEEEEEEEe
Q 005716 276 QICEGKVTTVHL---YQGAFVDI-GGVYDGWVPIKGNDWYWI---RHHIKVGMHVIVEILAK 330 (681)
Q Consensus 276 qIVEGkVtnItd---F~GAFVDI-GGv~DGLVHISEISW~rI---~dVLKVGDeVkVKVLsI 330 (681)
+.+.|+|+.... | | ||.- +|+.|=+||+|.|.-... -..|++||.|...|..-
T Consensus 7 ~~~~G~Vkwfn~~kGf-G-FI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~~ 66 (79)
T 1h95_A 7 TKVLGTVKWFNVRNGY-G-FINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEG 66 (79)
T ss_dssp EEEEEEEEEEETTTTE-E-EEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEEC
T ss_pred cccceEEEEEECCCCc-E-EEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEEEC
Confidence 457899999865 5 5 5543 445699999999975422 25789999999988654
No 85
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=69.24 E-value=16 Score=30.55 Aligned_cols=77 Identities=17% Similarity=0.101 Sum_probs=51.0
Q ss_pred hcccCCCCCCCCE--EEEEEEEeeec------ce-----eEEEcCCceeeeeEcccccccccc---cccccCCEEEEEEE
Q 005716 265 GMYELPFYYPGQI--CEGKVTTVHLY------QG-----AFVDIGGVYDGWVPIKGNDWYWIR---HHIKVGMHVIVEIL 328 (681)
Q Consensus 265 gv~~L~~LkeGqI--VEGkVtnItdF------~G-----AFVDIGGv~DGLVHISEISW~rI~---dVLKVGDeVkVKVL 328 (681)
.+..|.+|++|+. +.|+|+++..- .| +++-|+.. +|-|.+ .-|.... ..+++|+.|.|+=.
T Consensus 6 ~~~~I~~L~~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~-TG~I~~--t~w~~~~~~~~~l~~G~vv~i~g~ 82 (115)
T 2k50_A 6 RMDTISKLEEGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADD-TGELRA--VFWTENIKLLKKFREGDVIRIKDV 82 (115)
T ss_dssp CCCCTTTCCTTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEET-TEEEEE--EEETTGGGGGGTCCTTSEEEEEEE
T ss_pred ceEEHHHCCCCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeC-CCeEEE--EEeCchhhhhhcCCCCCEEEEEee
Confidence 3556888999997 55888888211 24 44555544 664332 3465432 47999999999888
Q ss_pred EeeCCCCCeeeeeeec
Q 005716 329 AKRDPYRFRFPIEMRF 344 (681)
Q Consensus 329 sIdD~eR~RISLSLK~ 344 (681)
-++...+++++|++..
T Consensus 83 ~v~~~f~g~~qL~~~~ 98 (115)
T 2k50_A 83 NIRGGFGGRKEAHLMP 98 (115)
T ss_dssp EECCCSSSSCEEEECT
T ss_pred EEccccCCeEEEEECC
Confidence 8755577888888743
No 86
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=68.99 E-value=29 Score=27.78 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=40.8
Q ss_pred EEEEEEEeee---cceeEEEc-CCceeeeeEcccccccccccccccCCEEEEEEEEeeCCCCCeeeeeee
Q 005716 278 CEGKVTTVHL---YQGAFVDI-GGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMR 343 (681)
Q Consensus 278 VEGkVtnItd---F~GAFVDI-GGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsIdD~eR~RISLSLK 343 (681)
..|+|+.... | | ||.- +|+.|=+||+|.|.-.- -..|++||.|...|..- + +.+-+..++
T Consensus 2 ~~G~Vk~fn~~kGf-G-FI~~~~gg~dvFvH~s~i~~~g-~~~l~~G~~V~f~~~~~-~--kG~~A~~V~ 65 (67)
T 3cam_A 2 ATGIVKWFNDAKGF-G-FITPDEGGEDLFAHFSAINMEG-FKTLKEGQRVSFDVTTG-P--KGKQAANIQ 65 (67)
T ss_dssp EEEEEEEEETTTTE-E-EEEETTSCCCEEEEGGGBCGGG-GSSCCTTCEEEEEEEEE-T--TEEEEEEEE
T ss_pred CCEEEEEEECCCCe-E-EEecCCCCccEEEEHHHccccC-CCCCCCCCEEEEEEEEC-C--CCccceEEE
Confidence 3799998854 5 4 5644 44569999999996321 25789999999998665 3 344444443
No 87
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=67.27 E-value=4.9 Score=30.53 Aligned_cols=51 Identities=14% Similarity=0.098 Sum_probs=31.6
Q ss_pred CEEEEEEEEeeeccee----EEEcCCceeeeeEccccccccccc-ccccCCEEEEEEEEe
Q 005716 276 QICEGKVTTVHLYQGA----FVDIGGVYDGWVPIKGNDWYWIRH-HIKVGMHVIVEILAK 330 (681)
Q Consensus 276 qIVEGkVtnItdF~GA----FVDIGGv~DGLVHISEISW~rI~d-VLKVGDeVkVKVLsI 330 (681)
..+.|+|++|..- |. .+++|++.. |. +.++-....+ -|++|+.|.+.|.+.
T Consensus 7 N~l~g~V~~i~~~-g~~~~V~l~~~~g~~-l~--a~it~~s~~~l~L~~G~~V~a~ika~ 62 (68)
T 1gut_A 7 NQLKGKVVGLKKG-VVTAEVVLEIAGGNK-IT--SIISLDSVEELGVKEGAELTAVVKST 62 (68)
T ss_dssp CEEEEEEEEEEEC-SSEEEEEEEETTSCE-EE--EEEEHHHHHHHTCCTTCEEEEECCGG
T ss_pred eEEEEEEEEEEeC-CceEEEEEEeCCCCE-EE--EEeCHHHHHHCCCCCCCEEEEEEecc
Confidence 3689999999975 74 445553311 22 2232222233 699999999987654
No 88
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.19 E-value=18 Score=32.11 Aligned_cols=72 Identities=15% Similarity=0.012 Sum_probs=51.5
Q ss_pred cccCCCCCCCCEEEEEEEEeeecceeE-EEcCCceeeeeEccccccccccc--ccccCCEEEEEEEEeeCCCCCeeeeee
Q 005716 266 MYELPFYYPGQICEGKVTTVHLYQGAF-VDIGGVYDGWVPIKGNDWYWIRH--HIKVGMHVIVEILAKRDPYRFRFPIEM 342 (681)
Q Consensus 266 v~~L~~LkeGqIVEGkVtnItdF~GAF-VDIGGv~DGLVHISEISW~rI~d--VLKVGDeVkVKVLsIdD~eR~RISLSL 342 (681)
+.++....+|+ +.|+|+..-.- +.| |-|..++.=|+||+. +++. -++.||.|.|.....++..+.||..-+
T Consensus 6 l~e~~~p~ege-~~g~V~~~lgn-~~f~V~l~nG~~~la~i~G----K~Rk~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~ 79 (111)
T 2dgy_A 6 SGEHIVPSNQQ-QIVRVLRTPGN-NLHEVETAQGQRFLVSMPS----KYRKNIWIKRGDFLIVDPIEEGEKVKAEISFVL 79 (111)
T ss_dssp CCSSCCCCSSC-EEEEEEECCSS-SEEEEECTTSCEEEEECCT----TCCSCCCCCSSCEEEEEECSSCSSCCEEEEEEC
T ss_pred hccccCCCCCe-EEEEEEEeCCC-CEEEEEeCCCCEEEEEech----hhcccEEEcCCCEEEEEecccCCcceEEEEEEe
Confidence 34566677776 56899998875 555 456555688999986 3433 578899999998877436777886655
Q ss_pred e
Q 005716 343 R 343 (681)
Q Consensus 343 K 343 (681)
+
T Consensus 80 ~ 80 (111)
T 2dgy_A 80 C 80 (111)
T ss_dssp C
T ss_pred C
Confidence 4
No 89
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=66.55 E-value=1.1 Score=41.58 Aligned_cols=34 Identities=6% Similarity=0.071 Sum_probs=31.5
Q ss_pred CCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccCc----------cccceeeehhhh
Q 005716 360 APIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHP----------YVDKLWQIHNAE 414 (681)
Q Consensus 360 gpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~hP----------~VegL~hIs~aE 414 (681)
|+|+. |+|.+ ...+|+||++.+ +++||+|||...
T Consensus 58 GdiV~-------G~V~~--------------V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~ 101 (179)
T 3m7n_A 58 GDVVL-------GRVVD--------------LRNSIALIEVSSKKGENRGPSNRGIGILHVSNVD 101 (179)
T ss_dssp TCEEE-------EEEEE--------------ECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTT
T ss_pred CCEEE-------EEEEE--------------EeCCcEEEEEccccCcccccccCeeEEEEHHHcC
Confidence 89999 99999 999999999999 899999999764
No 90
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=65.03 E-value=19 Score=28.50 Aligned_cols=52 Identities=23% Similarity=0.257 Sum_probs=36.7
Q ss_pred EEEEEEEeeecce-eEEEcCCceeeeeEcccccccccccccccCCEEEEEEEEe
Q 005716 278 CEGKVTTVHLYQG-AFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAK 330 (681)
Q Consensus 278 VEGkVtnItdF~G-AFVDIGGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsI 330 (681)
..|+|+....-.| =||.-.++.|=+||+|.|.-.- ...|++||.|...|..-
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g-~~~l~~G~~V~f~~~~~ 54 (66)
T 1c9o_A 2 QRGKVKWFNNEKGYGFIEVEGGSDVFVHFTAIQGEG-FKTLEEGQEVSFEIVQG 54 (66)
T ss_dssp EEEEEEEEETTTTEEEEEETTEEEEEEEGGGBCSSS-CCCCCTTCEEEEEEEEE
T ss_pred CceEEEEEECCCCeEEEecCCCccEEEEHHHccccC-CCCCCCCCEEEEEEEEC
Confidence 4799999865222 3665533379999999996321 24688999999988655
No 91
>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: b.40.4.10 c.116.1.2
Probab=64.77 E-value=12 Score=37.65 Aligned_cols=46 Identities=22% Similarity=0.241 Sum_probs=36.3
Q ss_pred CCCCCEEEEEEEEeeecceeEEEcCCceeeeeEcccccccccccccc--cCCEEEEEEEEe
Q 005716 272 YYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIK--VGMHVIVEILAK 330 (681)
Q Consensus 272 LkeGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~rI~dVLK--VGDeVkVKVLsI 330 (681)
-..|..-+|.|+....- |.|||+|. +..|.+. +. +|..|+|++.+.
T Consensus 100 ~~~~~yREGvv~~~~~~-~~~VdiGl--~~~v~~~----------~p~~~g~RVTV~~~~~ 147 (268)
T 1k3r_A 100 PVTGEYRQGLTVKRVKK-GTLVDIGA--DKLALCR----------EKLTVNRIMSFRVVRL 147 (268)
T ss_dssp CCTTCEEEEEEEEECSS-SEEEESSS--SCEEECS----------SCCCSSCEEEEEEEEC
T ss_pred CCccceEEEEEEEecCC-ceEEEeCC--CceEEEe----------cCCCCCcEEEEEecCC
Confidence 44688999999988775 99999996 4455543 55 899999999776
No 92
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=63.82 E-value=1.7 Score=41.54 Aligned_cols=37 Identities=5% Similarity=-0.075 Sum_probs=32.6
Q ss_pred cCCCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCccccc--------Cccccceeeehhh
Q 005716 356 RFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLST--------HPYVDKLWQIHNA 413 (681)
Q Consensus 356 rf~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~--------hP~VegL~hIs~a 413 (681)
.+++|+|+. |+|.+ ...+|+||++ ..+++||+|||..
T Consensus 78 ~p~vGDvV~-------G~V~~--------------v~~~~a~V~I~~v~~~~L~~~~~GlIhisei 122 (209)
T 2nn6_I 78 LPDVGAIVT-------CKVSS--------------INSRFAKVHILYVGSMPLKNSFRGTIRKEDV 122 (209)
T ss_dssp CCCTTCEEE-------EEEEE--------------ECSSEEEEEEEESSSSCCCCSSCSCEEEEGG
T ss_pred CCCCCCEEE-------EEEEE--------------EECceEEEEECccccccccCCceeEEEHHHc
Confidence 467899999 99999 9999999996 3688999999975
No 93
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=63.66 E-value=1.8 Score=41.60 Aligned_cols=36 Identities=0% Similarity=-0.088 Sum_probs=33.5
Q ss_pred CCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccCccccceeeehhhh
Q 005716 358 DFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNAE 414 (681)
Q Consensus 358 ~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~hP~VegL~hIs~aE 414 (681)
..|+|+. |.|.+ ...+|+||.+-...+||+|++...
T Consensus 65 ~~GDiV~-------G~V~~--------------v~~~~~~V~I~~~~~g~l~isei~ 100 (235)
T 2z0s_A 65 QAGDVVI-------GLIQS--------------VGIMNWFVDINSPYVAVLSVQDFL 100 (235)
T ss_dssp CTTCCEE-------EEEEE--------------ECSSEEEEECSSSSCEEEEHHHHH
T ss_pred CCCCEEE-------EEEEE--------------EeCCeEEEEeCCCeEEEEEHHHhC
Confidence 6799999 99999 899999999998999999999876
No 94
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=62.90 E-value=12 Score=27.84 Aligned_cols=51 Identities=16% Similarity=0.038 Sum_probs=31.0
Q ss_pred CEEEEEEEEeeecceeE----EEcCCceeeeeEcccccccccccccccCCEEEEEEEEe
Q 005716 276 QICEGKVTTVHLYQGAF----VDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAK 330 (681)
Q Consensus 276 qIVEGkVtnItdF~GAF----VDIGGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsI 330 (681)
..+.|+|++|..- |.. +++|++ .=...|+.-|+.. --|++|+.|.+.|.+.
T Consensus 7 N~l~g~V~~i~~~-g~~~~v~l~~~~~-~l~a~it~~s~~~--l~L~~G~~V~~~ika~ 61 (67)
T 1fr3_A 7 NKLEATVKEIVKG-TVMAKIVMDYKGT-ELVAAITIDSVAD--LDLVPGDKVTALVKAT 61 (67)
T ss_dssp EEEEEEEEEEEEC-SSEEEEEEEETTE-EEEEEEEHHHHHH--HTCCTTCEEEEEECGG
T ss_pred eEEEEEEEEEEeC-CceEEEEEEeCCC-EEEEEeCHHHHHh--CCCCCCCEEEEEEecc
Confidence 3689999999875 744 455543 2111222222221 2689999999988543
No 95
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=62.69 E-value=6 Score=33.70 Aligned_cols=51 Identities=8% Similarity=0.002 Sum_probs=37.9
Q ss_pred CEEEEEEEEeeecceeEEEc-CCceeeeeEcccccccccccccccCCEEEEEEEEe
Q 005716 276 QICEGKVTTVHLYQGAFVDI-GGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAK 330 (681)
Q Consensus 276 qIVEGkVtnItdF~GAFVDI-GGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsI 330 (681)
+...|+|+....=+| ||-. +|+.|=+||+|.|.-. ..|++||.|+..|..-
T Consensus 7 ~r~~G~Vk~f~KGfG-FI~~~~gg~DvFvH~s~i~~~---~~L~~G~~V~F~v~~g 58 (89)
T 1x65_A 7 GREMGVIAAMRDGFG-FIKCVDRDVRMFFHFSEILDG---NQLHIADEVEFTVVPD 58 (89)
T ss_dssp CCEEEEEEECCTTBC-EEEESSSSSCCCCBTTGGGGS---CCCCTTCCEEECCBCC
T ss_pred cceeEEEEEEeCCcc-eeecCCCCccEEEEhhhccCC---CCCCCCCEEEEEEEeC
Confidence 457899999864224 6654 4446899999999742 6899999999887543
No 96
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=62.03 E-value=15 Score=33.48 Aligned_cols=70 Identities=13% Similarity=-0.026 Sum_probs=46.3
Q ss_pred CEEEEEEEEeeecce-eEEEcC--------CceeeeeEcccccccccccccccCCEEEEEEEEeeCCCCCeeeeeeeccC
Q 005716 276 QICEGKVTTVHLYQG-AFVDIG--------GVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQ 346 (681)
Q Consensus 276 qIVEGkVtnItdF~G-AFVDIG--------Gv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsIdD~eR~RISLSLK~~~ 346 (681)
+.+.|+|+-...-.| -||... ++.|=+||+|.|.-.- -..|++||.|+..|..- + +..-+..+....
T Consensus 8 ~~~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~~g-~~~l~eG~~V~f~~~~g-~--kG~~A~~V~~pg 83 (148)
T 3ts2_A 8 LHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEG-FRSLKEGEAVEFTFKKS-A--KGLESIRVTGPG 83 (148)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCSSS-SCCCCTTCEEEEEEEEE-T--TEEEEEEEESGG
T ss_pred ccceeEEEEEECCCCeeEEeeCccccccCCCCccEEEEhHHhcccC-CccCCCCCEEEEEEEEc-c--ccchhhcccccC
Confidence 457899999865323 355432 3458899999995322 24789999999999876 3 445556665544
Q ss_pred CCc
Q 005716 347 PNI 349 (681)
Q Consensus 347 pnP 349 (681)
.-|
T Consensus 84 g~p 86 (148)
T 3ts2_A 84 GVF 86 (148)
T ss_dssp GCC
T ss_pred Ccc
Confidence 434
No 97
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=60.58 E-value=12 Score=29.74 Aligned_cols=51 Identities=24% Similarity=0.158 Sum_probs=35.4
Q ss_pred EEEEEEeeecce-eEEEcCCceeeeeEcccccccccccccccCCEEEEEEEEe
Q 005716 279 EGKVTTVHLYQG-AFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAK 330 (681)
Q Consensus 279 EGkVtnItdF~G-AFVDIGGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsI 330 (681)
+|+|+....-.| =||.-.++.|=+||+|.|.-.- -..|++||.|...|-.-
T Consensus 2 ~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~g-~~~l~~G~~V~f~~~~~ 53 (66)
T 1g6p_A 2 RGKVKWFDSKKGYGFITKDEGGDVFVHWSAIEMEG-FKTLKEGQVVEFEIQEG 53 (66)
T ss_dssp CEEEEEEETTTTEEEEEETTSCBCBBCSSSSCCSS-CCCCCSSSEEEEEEECS
T ss_pred cEEEEEEECCCCEEEEecCCCceEEEEhHHccccC-CCCCCCCCEEEEEEEEC
Confidence 589998864222 3665533469999999996321 24688999999888543
No 98
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=60.25 E-value=35 Score=31.78 Aligned_cols=74 Identities=15% Similarity=0.053 Sum_probs=50.9
Q ss_pred hhcccCCCCCCCCEEEEEEEEeeecceeE-EEcCCceeeeeEcccccccccccccccCCEEEEEEEEeeCCCCCeeeeee
Q 005716 264 EGMYELPFYYPGQICEGKVTTVHLYQGAF-VDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEM 342 (681)
Q Consensus 264 egv~~L~~LkeGqIVEGkVtnItdF~GAF-VDIGGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsIdD~eR~RISLSL 342 (681)
+.+.++....+|+ +.|+|+.+-.- +.| |-|..++.=|+|||.=-=+ +=-+..||.|.|..... |..+.||..-+
T Consensus 20 ~~~~el~~p~ege-~~g~V~e~lgn-~~f~V~l~nG~~~La~I~GKmRk--~IwI~~GD~VlVe~~~y-d~~KG~Ii~r~ 94 (143)
T 1d7q_A 20 SEKRELVFKEDGQ-EYAQVIKMLGN-GRLEAMCFDGVKRLCHIRGKLRK--KVWINTSDIILVGLRDY-QDNKADVILKY 94 (143)
T ss_dssp CCCCCCCCCCTTE-EEEEEEEECSS-SEEEEEETTTEEEEEECCSGGGG--SCCCCTTCEEEEECSSS-SSSCCEEEEEE
T ss_pred hhhhcccCCCCCE-EEEEEEEEcCC-CEEEEEeCCCCEEEEEeccccee--eEEecCCCEEEEeeccC-CCCeEEEEEEe
Confidence 3445666666665 67899999875 555 5566667999999863222 22678899999998766 45666765444
No 99
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=57.62 E-value=48 Score=29.67 Aligned_cols=73 Identities=19% Similarity=0.154 Sum_probs=43.9
Q ss_pred CCCCCCCcc--------hhhhcccCCCCCCCCEEEEEEEEeeecceeEEEcCC--ceeeeeEcccc-ccc---ccccccc
Q 005716 253 PGRRKRGKD--------YEEGMYELPFYYPGQICEGKVTTVHLYQGAFVDIGG--VYDGWVPIKGN-DWY---WIRHHIK 318 (681)
Q Consensus 253 PGRDPR~~~--------f~egv~~L~~LkeGqIVEGkVtnItdF~GAFVDIGG--v~DGLVHISEI-SW~---rI~dVLK 318 (681)
|.-+||+.. |+... -+|-+|++.+|+|. +.++ -.+|.|-+ +.+++|--+=. .-. ++++-|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~VtkGiVy-~kd~-~fyV~L~dY~glEaii~dYvnv~~dr~~klkkkL- 79 (102)
T 1jjg_A 6 PSSRPRPRKNKNIKVNTYRTSA---MDLSPGSVHEGIVY-FKDG-IFKVRLLGYEGHECILLDYLNYRQDTLDRLKERL- 79 (102)
T ss_dssp CCCCCCCCCCCCCCCCCCSSCC---CCCCSSCEEEEEEE-EETT-EEEEECTTTSSCEEEECTTCCSSCCCCCHHHHHH-
T ss_pred CCCCCCCccCCceeEeeeeeec---cccCCCceEeeEEE-EeCC-EEEEEecCCCCceeeeehhhhhhHHHHHHHHHHh-
Confidence 555666552 44333 57889999999986 5555 55677733 34666521100 011 222322
Q ss_pred cCCEEEEEEEEee
Q 005716 319 VGMHVIVEILAKR 331 (681)
Q Consensus 319 VGDeVkVKVLsId 331 (681)
||-.|+|+|+.+|
T Consensus 80 VGKtIkVqVIRvD 92 (102)
T 1jjg_A 80 VGRVIKTRVVRAD 92 (102)
T ss_dssp TTCEEEEEEEEEC
T ss_pred cCceEEEEEEEec
Confidence 5999999999993
No 100
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=57.50 E-value=32 Score=28.32 Aligned_cols=62 Identities=15% Similarity=0.066 Sum_probs=42.9
Q ss_pred EEEEEEeee---cceeEEEc-CCceeeeeEccccc-ccccccccccCCEEEEEEEEeeCCCCCeeeeeeeccCC
Q 005716 279 EGKVTTVHL---YQGAFVDI-GGVYDGWVPIKGND-WYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMRFVQP 347 (681)
Q Consensus 279 EGkVtnItd---F~GAFVDI-GGv~DGLVHISEIS-W~rI~dVLKVGDeVkVKVLsIdD~eR~RISLSLK~~~p 347 (681)
+|+|+.... | | ||.- +| .|=+||+|.|. -.- -..|++||.|...|..- .++.-+..++.+.+
T Consensus 2 ~G~Vkwfn~~KGf-G-FI~~~dG-~DvFvH~s~i~~~~g-~~~l~~G~~V~F~~~~g---~kG~~A~~V~~~~~ 68 (74)
T 2kcm_A 2 KGKVVSYLAAKKY-G-FIQGDDG-ESYFLHFSELLDKKD-EGKLVKGSMVHFDPTPT---PKGLAAKAISLPLE 68 (74)
T ss_dssp EEEEEEEETTTTE-E-EEEETTS-CEECCCGGGSSCSGG-GTTCCTTSEEEEEEECT---TTSCEEEEEECCSC
T ss_pred CEEEEEEECCCCE-E-EEecCCC-ceEEEEhhhcccCCC-CCCCCCCCEEEEEEEEC---CCCceeEEEEEcCc
Confidence 699998864 5 4 6654 44 79999999996 322 24689999999988633 24556666665544
No 101
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=61.49 E-value=2.3 Score=34.36 Aligned_cols=52 Identities=27% Similarity=0.321 Sum_probs=36.8
Q ss_pred CEEEEEEEEeee---cceeEEEc-CCceeeeeEcccccccccccccccCCEEEEEEEEe
Q 005716 276 QICEGKVTTVHL---YQGAFVDI-GGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAK 330 (681)
Q Consensus 276 qIVEGkVtnItd---F~GAFVDI-GGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsI 330 (681)
+.+.|+|+.... | | ||.- +|+.|=+||+|.|.-.- ...|++||.|...|..-
T Consensus 3 ~~~~G~Vk~fn~~kGf-G-FI~~~~gg~dvFvH~s~i~~~g-~~~l~~G~~V~f~~~~~ 58 (70)
T 2lss_A 3 TNIVGKVKWYNSTKNF-G-FIEQDNGGKDVFVHKSAVDAAG-LHSLEEGQDVIFDLEEK 58 (70)
Confidence 357899998754 6 5 5543 34469999999996321 24689999999887544
No 102
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=55.60 E-value=11 Score=31.84 Aligned_cols=61 Identities=23% Similarity=0.209 Sum_probs=40.5
Q ss_pred EEEEEEEEeeecceeE-EEcCCceeeeeEccccccc-ccccccccCCEEEEEEEEeeCCCCCeeeee
Q 005716 277 ICEGKVTTVHLYQGAF-VDIGGVYDGWVPIKGNDWY-WIRHHIKVGMHVIVEILAKRDPYRFRFPIE 341 (681)
Q Consensus 277 IVEGkVtnItdF~GAF-VDIGGv~DGLVHISEISW~-rI~dVLKVGDeVkVKVLsIdD~eR~RISLS 341 (681)
.++|+|+....- |.| |.+..++.=+-|||.--=. +| -+-+||.|.|.+... |..+.||-.-
T Consensus 15 e~~G~Vik~l~n-~~f~V~l~nG~~~~c~i~GK~Rk~~I--~Il~GD~V~ve~~~y-d~~kgrIi~R 77 (79)
T 3i4o_A 15 EVEGRVVEPLPN-AMFRIELENGHKVLAHISGKMRQHYI--RILPEDRVVVELSPY-DLSRGRIVYR 77 (79)
T ss_dssp EEEEEEEEEETT-TEEEEEETTSCEEEEEECHHHHHTTC--CCCTTCEEEEEEETT-EEEEEEEEEE
T ss_pred EEEEEEEEEcCC-CEEEEEeCCCCEEEEEeCcceecCCc--cCCCCCEEEEEECcc-CCCcEEEEEE
Confidence 478999998753 443 5565333447787753221 22 378999999998877 5677787543
No 103
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=49.36 E-value=64 Score=27.50 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=46.1
Q ss_pred ccCCCCCCCC---EEEEEEEEeee----cceeEEEcCCceeeeeEccccccc-ccccccccCCEEEEEEEEeeCCCCCee
Q 005716 267 YELPFYYPGQ---ICEGKVTTVHL----YQGAFVDIGGVYDGWVPIKGNDWY-WIRHHIKVGMHVIVEILAKRDPYRFRF 338 (681)
Q Consensus 267 ~~L~~LkeGq---IVEGkVtnItd----F~GAFVDIGGv~DGLVHISEISW~-rI~dVLKVGDeVkVKVLsIdD~eR~RI 338 (681)
..|.+|++|+ -+.|+|..+.. .....+-||.. +|-|.. ..|. .-...+++|+.|+++=-.+ +.+++++
T Consensus 6 ~kI~dl~~~~~~v~v~~~V~~~~~~~~~~~~~~~~l~De-TG~I~~--t~W~~~~~~~~~~G~~V~i~n~~v-~~~~G~~ 81 (109)
T 2kbn_A 6 TKIVDIVENGQWANLKAKVIQLWENTHESISQVGLLGDE-TGIIKF--TIWKNAELPLLEQGESYLLRSVVV-GEYNDRF 81 (109)
T ss_dssp CCTTTCCSTTCEEEEEEEEEEEEECCCSSEEEEEEEECT-TCCEEE--EEEGGGCCCCCCTTCEEEEEEEEE-EEETTEE
T ss_pred eEHHHCCCCCCcEEEEEEEEEeEcCCCCeEEEEEEEECC-CCeEEE--EEECcccccccCCCCEEEEEEEEE-EEECCEE
Confidence 3577888744 57888888763 11223345554 665443 4687 4456899999999883333 3367888
Q ss_pred eeee
Q 005716 339 PIEM 342 (681)
Q Consensus 339 SLSL 342 (681)
+|.+
T Consensus 82 ~L~v 85 (109)
T 2kbn_A 82 QVQV 85 (109)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8887
No 104
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=49.29 E-value=36 Score=29.08 Aligned_cols=62 Identities=13% Similarity=0.069 Sum_probs=39.4
Q ss_pred EEEEEEEEeeecce-eEEE--------cCCceeeeeEcccccccccccccccCCEEEEEEEEeeCCCCCeeeeee
Q 005716 277 ICEGKVTTVHLYQG-AFVD--------IGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEM 342 (681)
Q Consensus 277 IVEGkVtnItdF~G-AFVD--------IGGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsIdD~eR~RISLSL 342 (681)
..+|+|+-...-.| =||- ..++.|=+||+|.|.=.-. ..|..||.|...|..= + +..-+..+
T Consensus 8 r~tG~VKWFn~~KGfGFI~~~~~~~~p~dgg~DvFVH~s~i~~~g~-~~L~eG~~V~f~v~~g-~--kG~~A~~V 78 (90)
T 3ulj_A 8 RGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGF-RSLKEGEPVEFTFKKS-S--KGFESLRV 78 (90)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCCSSS-CCCCTTCEEEEEEEEE-T--TEEEEEEE
T ss_pred ccceEEEEeeCCCCeEEeEecCcCcCCCCCCccEEEEeehhcccCC-CccCCCCEEEEEEEEC-C--CCcEEEEE
Confidence 46799997653222 2662 2233588999999953222 3689999999988765 2 34444444
No 105
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=47.33 E-value=35 Score=31.09 Aligned_cols=56 Identities=20% Similarity=0.112 Sum_probs=37.6
Q ss_pred CCCCEEEEEEEEeeecceeEEEcCCcee--eeeEcccccccc---cccccccCCEEEEEEEE
Q 005716 273 YPGQICEGKVTTVHLYQGAFVDIGGVYD--GWVPIKGNDWYW---IRHHIKVGMHVIVEILA 329 (681)
Q Consensus 273 keGqIVEGkVtnItdF~GAFVDIGGv~D--GLVHISEISW~r---I~dVLKVGDeVkVKVLs 329 (681)
+.|.-++|+|+.|.+= +++|.....-. =.|+++++-=-. ....+.+||+|+|...+
T Consensus 13 ~~G~~y~a~V~~v~~d-~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~~ 73 (128)
T 3h8z_A 13 SNGAFYKGFVKDVHED-SVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRA 73 (128)
T ss_dssp TTSCEEEEEEEEECSS-EEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEECC
T ss_pred CCCCEEEEEEEEEeCC-cEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEEecC
Confidence 4588999999999986 99999964211 255555552210 11378999999996654
No 106
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=45.55 E-value=5.4 Score=37.57 Aligned_cols=34 Identities=9% Similarity=0.164 Sum_probs=30.2
Q ss_pred CCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccCccccceeeehhh
Q 005716 358 DFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNA 413 (681)
Q Consensus 358 ~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~hP~VegL~hIs~a 413 (681)
.+|-||. |.|.. .++||.||++ ..++||+|++..
T Consensus 80 ~~GEv~~-------G~Vs~--------------vt~~GifV~l-g~~eglv~~~~l 113 (203)
T 3ayh_B 80 FRGEVML-------GKIKS--------------CSEEGIRVTI-SFFDDIFIPKDM 113 (203)
T ss_dssp CTTCEEE-------EEEEE--------------EETTEEEEEC-SSCCCEEEEGGG
T ss_pred CCCCEEE-------EEEEE--------------EeccEEEEEE-eCceEEEEcHHh
Confidence 5588898 99999 9999999999 589999999974
No 107
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=45.49 E-value=60 Score=34.88 Aligned_cols=65 Identities=12% Similarity=0.135 Sum_probs=39.2
Q ss_pred EEEEEEEEeeecce---eEEEcC---CceeeeeEcccc----cccccccccccCCEEEEEEEEeeCCCCCeeeeeee
Q 005716 277 ICEGKVTTVHLYQG---AFVDIG---GVYDGWVPIKGN----DWYWIRHHIKVGMHVIVEILAKRDPYRFRFPIEMR 343 (681)
Q Consensus 277 IVEGkVtnItdF~G---AFVDIG---Gv~DGLVHISEI----SW~rI~dVLKVGDeVkVKVLsIdD~eR~RISLSLK 343 (681)
.|.|.|.++... | +||+|- |.....+..+.+ .+..+...|..|+.|.|+=.=+..+ ++-++|..+
T Consensus 59 ~v~Grv~~~R~~-gkk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~-~ge~ei~~~ 133 (521)
T 3bju_A 59 KVAGRIHAKRAS-GGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTK-KGELSIIPY 133 (521)
T ss_dssp EEEEEEEEEEES-SSSEEEEEEEETTEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECT-TCCEEEEEE
T ss_pred EEEEEEEEEecC-CCCcEEEEEEECCEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecC-CCCEEEEEe
Confidence 589999999997 9 899993 223334444333 1222334588999998873323222 344555443
No 108
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=44.42 E-value=38 Score=26.54 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=31.7
Q ss_pred CCCCCEEEEEEEEeeecceeEEEcCCceeeeeEcccccccccccccccCCEEEEEEEEe
Q 005716 272 YYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAK 330 (681)
Q Consensus 272 LkeGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsI 330 (681)
++.|++++.+|.++..- + +|+.++...-. -|.. .-+||.|.|+|..+
T Consensus 11 ~~~~~~~~~~I~~l~~~---------G-~Gva~~~g~~v-fV~~-alPGE~V~v~i~k~ 57 (68)
T 1yez_A 11 VEEGEVYDVTIQDIARQ---------G-DGIARIEGFVI-FVPG-TKVGDEVRIKVERV 57 (68)
T ss_dssp CCTTEEEEEECCEEETT---------T-EEEEEETTEEE-EEES-CCTTCEEEEEEEEE
T ss_pred cCCCCEEEEEEEEcCCC---------c-cEEEEECCEEE-ECcC-CCCCCEEEEEEEEe
Confidence 57899998888876543 2 67766543211 1223 35899999999998
No 109
>1yvc_A MRR5; structure, autostructure, autoassign, northeast structural genomics, autoqf, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: b.40.4.12
Probab=44.02 E-value=39 Score=26.86 Aligned_cols=47 Identities=19% Similarity=0.166 Sum_probs=31.8
Q ss_pred CCCCCEEEEEEEEeeecceeEEEcCCceeeeeEcccccccccccccccCCEEEEEEEEe
Q 005716 272 YYPGQICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAK 330 (681)
Q Consensus 272 LkeGqIVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsI 330 (681)
++.|++++.+|.++..- + +|+.++..... -|. ..-+||.|.|+|..+
T Consensus 13 ~~~~~~~~v~I~~l~~~---------G-~Gva~~~g~~v-fV~-~alPGE~V~v~i~k~ 59 (70)
T 1yvc_A 13 VEAGKEYEVTIEDMGKG---------G-DGIARIDGFVV-FVP-NAEKGSVINVKVTAV 59 (70)
T ss_dssp SCTTCEEEEECCEECTT---------S-CEEEEETTEEE-EET-TCCTTCEEEEEEEEE
T ss_pred ccCCCEEEEEEEEcCCC---------c-cEEEEECCEEE-Ecc-CCCCCCEEEEEEEEe
Confidence 57899998888876543 2 67777643211 122 344799999999998
No 110
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=43.64 E-value=4 Score=44.56 Aligned_cols=36 Identities=6% Similarity=-0.193 Sum_probs=29.9
Q ss_pred CCCCC--ccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCccccc-Cccccceeeehhh
Q 005716 357 FDFAP--IFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLST-HPYVDKLWQIHNA 413 (681)
Q Consensus 357 f~vgp--I~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~-hP~VegL~hIs~a 413 (681)
..+|. +|. |.|.+ .++||.||++ ..||+||+|||..
T Consensus 556 ~~vGe~~~f~-------g~V~~--------------V~~~G~fV~L~~~gieGlVhis~l 594 (644)
T 2id0_A 556 DKAGTDTRFA-------AEIVD--------------ISRGGMRVRLVDNGAIAFIPAPFL 594 (644)
T ss_dssp GGTTSCCCEE-------EEEEE--------------EETTEEEEEETTTCCEEEEEGGGT
T ss_pred hccCCCceEE-------EEEEE--------------EeCCceEEEEcCCcEEEEEEchhc
Confidence 34566 777 88888 8899999999 5799999999865
No 111
>1h9m_A MODG, molybdenum-binding-protein; molybdate homeostasis; 1.65A {Azotobacter vinelandii} SCOP: b.40.6.2 b.40.6.2 PDB: 1h9k_A 1h9j_A
Probab=42.54 E-value=39 Score=28.03 Aligned_cols=51 Identities=18% Similarity=0.089 Sum_probs=31.1
Q ss_pred CEEEEEEEEeeecceeE----EEcCCceeeeeEcccccccccccccccCCEEEEEEEE
Q 005716 276 QICEGKVTTVHLYQGAF----VDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILA 329 (681)
Q Consensus 276 qIVEGkVtnItdF~GAF----VDIGGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLs 329 (681)
..+.|+|+.|... |.. |+++++..=.+.|+.-++. ..-+++|+.|.+.+..
T Consensus 82 N~l~g~V~~i~~~-G~~~~v~v~~~~g~~l~a~it~~~~~--~l~l~~G~~V~~~~k~ 136 (145)
T 1h9m_A 82 NILTGTVKTIETG-AVNAEVTLALQGGTEITSMVTKEAVA--ELGLKPGASASAVIKA 136 (145)
T ss_dssp EEEEEEEEEEEEC-SSEEEEEEEETTSCEEEEEEEHHHHH--HTTCCTTCEEEEEECG
T ss_pred EEEEEEEEEEEeC-CceEEEEEEeCCCCEEEEEEcHHHHh--hcCCCCCCEEEEEEcc
Confidence 3689999999865 864 5664332222333322222 1258899999988744
No 112
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=38.32 E-value=31 Score=29.85 Aligned_cols=43 Identities=26% Similarity=0.429 Sum_probs=29.3
Q ss_pred EEEEEEEeeecceeEEEcCCceeeeeEccccccccc-----ccccccCCEEEEEE
Q 005716 278 CEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWI-----RHHIKVGMHVIVEI 327 (681)
Q Consensus 278 VEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~rI-----~dVLKVGDeVkVKV 327 (681)
+-|+|+.|.+- .|.||+||+ . .+++-.-+ ..-+++||-|.|-+
T Consensus 5 IP~kVvei~~~-~A~Vd~~Gv-~-----r~V~l~Lv~~~~~~~~~~vGD~VLVH~ 52 (90)
T 2ot2_A 5 VPGQIRTIDGN-QAKVDVCGI-Q-----RDVDLTLVGSCDENGQPRVGQWVLVHV 52 (90)
T ss_dssp EEEEEEEECSS-EEEEECSSS-E-----EEEECTTTCSBCTTSCBCTTCEEEEET
T ss_pred cceEEEEEcCC-cEEEEcCCe-E-----EEEEEeeeeccCCCCCCCCCCEEEEec
Confidence 56999999886 699999986 2 22222223 12368899998853
No 113
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=35.89 E-value=8.9 Score=37.57 Aligned_cols=36 Identities=6% Similarity=-0.114 Sum_probs=33.5
Q ss_pred CCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccCccccceeeehhhh
Q 005716 358 DFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNAE 414 (681)
Q Consensus 358 ~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~hP~VegL~hIs~aE 414 (681)
.+|+|+. |+|.+ ...+|+||.+....+||+||+...
T Consensus 73 ~~GDiV~-------G~V~~--------------v~~~ga~VdI~~~~~GlL~isei~ 108 (251)
T 2je6_I 73 KINDIVI-------GLVED--------------VEIYGWVVDIKAPYKAYLPASNLL 108 (251)
T ss_dssp CTTCEEE-------EEEEE--------------ECSSEEEEECSSSSCEEEEHHHHH
T ss_pred CCCCEEE-------EEEEE--------------EeCceEEEEcCCCeEEEEEHHHhc
Confidence 6799999 99999 999999999998999999999876
No 114
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=34.07 E-value=55 Score=28.97 Aligned_cols=71 Identities=18% Similarity=0.077 Sum_probs=41.9
Q ss_pred hhcccCCCCCCCCEEEEEEEEeeecceeE-EEcCCceeeeeEcccccccccccccccCCEEEEEEEEeeCCCCCeee
Q 005716 264 EGMYELPFYYPGQICEGKVTTVHLYQGAF-VDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFP 339 (681)
Q Consensus 264 egv~~L~~LkeGqIVEGkVtnItdF~GAF-VDIGGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsIdD~eR~RIS 339 (681)
+...++....+||. .|+|+....- |-| |-+..++.=|.||+---=. .--+.+||.|.|.+... +..+.+|.
T Consensus 21 ~~~~~~~~~~~~e~-~G~Vi~~lgn-~~y~V~~~dG~~~l~~i~GK~Rk--~I~i~~GD~V~ve~~~~-~~~kG~I~ 92 (117)
T 2oqk_A 21 GDKRELVFKEEGQE-YGQVQRMLGN-GRLDAYCFDGQKRLCHIRGKMRK--KVWVNPGDIVLVSLRDF-QDSKGDII 92 (117)
T ss_dssp -CCCCCCCCCTTEE-EEEEEEEEET-TEEEEEETTSCEEEEECCHHHHH--HSCCCTTCEEEEEECTT-CTTEEEEE
T ss_pred hhhhhccCCCCCEE-EEEEEEEcCC-CEEEEEeCCCCEEEEEEcCceec--CCcCCCCCEEEEEEEcC-CCCeEEEE
Confidence 34466777788877 6999998862 222 3344333556777654222 22445999999886644 33344553
No 115
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=33.72 E-value=9.9 Score=41.26 Aligned_cols=37 Identities=8% Similarity=0.118 Sum_probs=33.3
Q ss_pred cCCCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCC--CcccccCccccceeeehhh
Q 005716 356 RFDFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEE--EGLLSTHPYVDKLWQIHNA 413 (681)
Q Consensus 356 rf~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~ef--gafve~hP~VegL~hIs~a 413 (681)
+..+|.|+. |.|.| ...+ ||||.+-++.+||+|||..
T Consensus 42 ~~~vGnIY~-------GkV~r--------------v~p~~~aAFVdiG~gk~gfLhisei 80 (517)
T 2bx2_L 42 EQKKANIYK-------GKITR--------------IEPSLEAAFVDYGAERHGFLPLKEI 80 (517)
T ss_dssp CCCTTCEEE-------EEEEE--------------EETTTTEEEEESSSSSCEEEEGGGS
T ss_pred cCCCCCEEE-------EEEEE--------------eccCCceEEEEeCCCcEEEEEHHHc
Confidence 456899999 99999 7788 9999999999999999964
No 116
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=32.24 E-value=93 Score=26.52 Aligned_cols=74 Identities=18% Similarity=0.143 Sum_probs=46.4
Q ss_pred ccCCCCCCCC---EEEEEEEEeeec------ce--eEEE--cCCceeeeeEcccccccccccccccCCEEEEEEEEeeCC
Q 005716 267 YELPFYYPGQ---ICEGKVTTVHLY------QG--AFVD--IGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDP 333 (681)
Q Consensus 267 ~~L~~LkeGq---IVEGkVtnItdF------~G--AFVD--IGGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsIdD~ 333 (681)
..|.+|++|+ .+.|+|+++.+- .| -|.. |+.. +|-| .=.-|..-.+.+++|+.|.|+=-.+ ..
T Consensus 3 ~~I~dL~~~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~-TG~I--~~tlW~~~~~~~~~G~vv~i~~g~v-~~ 78 (119)
T 1o7i_A 3 EKVGNLKPNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDE-TGRV--KLTLWGKHAGSIKEGQVVKIENAWT-TA 78 (119)
T ss_dssp CCGGGCCTTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEET-TEEE--EEEEEGGGTTCCCTTCEEEEEEEEE-EE
T ss_pred EEHHHCcCCCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeC-CCEE--EEEEECChhhcCCCCCEEEEEeEEE-EE
Confidence 3577888887 467888887421 12 2333 3433 5643 3346877667799999998872233 23
Q ss_pred CCCeeeeeeec
Q 005716 334 YRFRFPIEMRF 344 (681)
Q Consensus 334 eR~RISLSLK~ 344 (681)
.+++++|++..
T Consensus 79 ~~g~~qL~i~~ 89 (119)
T 1o7i_A 79 FKGQVQLNAGS 89 (119)
T ss_dssp ETTEEEEEECT
T ss_pred eCCEEEEEECC
Confidence 57888888854
No 117
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=31.54 E-value=1.4e+02 Score=27.34 Aligned_cols=83 Identities=16% Similarity=0.079 Sum_probs=51.8
Q ss_pred hhhcccCCCCCCCC---EEEEEEEEeee------c---ce-----------eEEEcCCceeeeeEccccccccccccccc
Q 005716 263 EEGMYELPFYYPGQ---ICEGKVTTVHL------Y---QG-----------AFVDIGGVYDGWVPIKGNDWYWIRHHIKV 319 (681)
Q Consensus 263 ~egv~~L~~LkeGq---IVEGkVtnItd------F---~G-----------AFVDIGGv~DGLVHISEISW~rI~dVLKV 319 (681)
+.-...|.+|++|+ -+.|+|..+.. + .| |=+=||.. +|-|+.+ .|..-.+.+++
T Consensus 13 kp~~~kI~dL~pg~~~v~l~~kVl~~~~v~~~~~~~R~dG~~~~~~r~~~V~~~lVgDe-TG~I~ft--lW~e~~~~l~~ 89 (145)
T 1wjj_A 13 KPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE-TGCILFT--ARNDQVDLMKP 89 (145)
T ss_dssp CCSSCCSTTCCTTCCCEEEEEEEEEEEECCSSSSCCSCSSCCSSCCCCCCCEEEEEECS-SCEEEEE--ECTTHHHHTCT
T ss_pred CccceEHHHcCCCCCceEEEEEEEEcccccccccccccCCccccccCCceEEEEEEEcC-CcEEEEE--EecCCcCcCCC
Confidence 33345688888887 58888888763 2 01 01123332 5555443 46654467999
Q ss_pred CCEEEEEEEEeeCCCCCeeeeeeeccCCCcccccc
Q 005716 320 GMHVIVEILAKRDPYRFRFPIEMRFVQPNIDHLIF 354 (681)
Q Consensus 320 GDeVkVKVLsIdD~eR~RISLSLK~~~pnPW~~I~ 354 (681)
|+.|++.=--+ +..+.++.|.+ +.|-.|.
T Consensus 90 Gd~v~i~na~v-~~~~G~~~L~v-----gk~g~Ie 118 (145)
T 1wjj_A 90 GATVILRNSRI-DMFKGTMRLGV-----DKWGRIE 118 (145)
T ss_dssp TCEEEEEEEEE-EEETTEEEEEE-----CTTCCBC
T ss_pred CCEEEEeccEE-EeECCEEEEEE-----CCCEEEE
Confidence 99998876666 34678888877 4555544
No 118
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=30.39 E-value=51 Score=31.21 Aligned_cols=56 Identities=16% Similarity=0.028 Sum_probs=41.1
Q ss_pred EEEEEEEEeeecceeEEEcCCceeeeeEcccccccccccccccCCEEEEEEEEeeCCCCCee
Q 005716 277 ICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRF 338 (681)
Q Consensus 277 IVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsIdD~eR~RI 338 (681)
-+.|+|..+.+- .+.||+||+ -=.|++|.-....+. +|++|.+.++-.=..+-.|+
T Consensus 4 ~l~G~l~~~~~~-~~vidv~Gv-GY~v~~~~~t~~~l~----~g~~v~l~~~~~vReda~~l 59 (191)
T 1ixr_A 4 YLRGLVLKKEAG-GFVLLAGGV-GFFLQAPTPFLQALE----EGKEVGVHTHLLLKEEGLSL 59 (191)
T ss_dssp EEEEEEEEECSS-EEEEECSSE-EEEEECCHHHHHHCC----TTSEEEEEECCCCCSSCCCE
T ss_pred eEEEEEEEEeCC-EEEEEECCE-EEEEEcCHHHHHhCC----CCCeEEEEEEehhhhhhHHh
Confidence 378999999997 999999986 556787766555443 69999999876622233444
No 119
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=30.28 E-value=12 Score=43.08 Aligned_cols=33 Identities=9% Similarity=-0.034 Sum_probs=29.0
Q ss_pred CCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccCc-cccceeeehhh
Q 005716 360 APIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHP-YVDKLWQIHNA 413 (681)
Q Consensus 360 gpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~hP-~VegL~hIs~a 413 (681)
|.++. |.|.+ .++||.||.+-+ ||+|||||+..
T Consensus 887 ge~~~-------g~V~~--------------V~~~G~fV~L~~~giEGlVhis~L 920 (977)
T 2wp8_J 887 ESTET-------GYVIK--------------VFNNGIVVLVPKFGVEGLIRLDNL 920 (977)
T ss_dssp TCEEE-------EEEEE--------------ECSSEEEEECTTTCCEEEEEGGGT
T ss_pred ceEEE-------EEEEE--------------EcCCeEEEEEcCCCeEEEEEeccc
Confidence 66777 88888 889999999988 89999999975
No 120
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=30.12 E-value=65 Score=31.18 Aligned_cols=48 Identities=17% Similarity=0.121 Sum_probs=37.6
Q ss_pred EEEEEEEEeeecceeEEEcCCceeeeeEcccccccccccccccCCEEEEEEEEe
Q 005716 277 ICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAK 330 (681)
Q Consensus 277 IVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsI 330 (681)
.++|+|..|.+- -+.||++|+ .=.|+++.-....+ .+|+.|++.+--+
T Consensus 20 ~l~G~v~~~~~~-~~Vi~v~gV-Gy~v~v~~~t~~~l----~~Ge~v~l~t~~~ 67 (212)
T 2ztd_A 20 SVRGEVLEVALD-HVVIEAAGV-GYRVNATPATLATL----RQGTEARLITAMI 67 (212)
T ss_dssp EEEEEEEEECSS-EEEEEETTE-EEEEECCHHHHTTC----CTTSEEEEEEEEE
T ss_pred EEEEEEEEEECC-EEEEEECCe-eEEEEEChHhHHhc----CCCCEEEEEEEEE
Confidence 489999999986 899999984 55688876544333 6799999988765
No 121
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=29.78 E-value=90 Score=29.75 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=37.6
Q ss_pred EEEEEEEEeeecceeEEEcCCceeeeeEcccccccccccccccCCEEEEEEEEe
Q 005716 277 ICEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAK 330 (681)
Q Consensus 277 IVEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsI 330 (681)
-++|+|..+.+- .+.||+||+ -=.|++|.-....+. .+|++|.+.++-.
T Consensus 4 ~l~G~l~~~~~~-~vvidv~GV-GY~v~~~~~t~~~l~---~~g~~v~l~~~~~ 52 (203)
T 1cuk_A 4 RLRGIIIEKQPP-LVLIEVGGV-GYEVHMPMTCFYELP---EAGQEAIVFTHFV 52 (203)
T ss_dssp EEEEEEEEEETT-EEEEEETTE-EEEEECCHHHHTTCC---CTTSEEEEEEEEE
T ss_pred eEEEEEEEEeCC-EEEEEECCE-EEEEEcCHHHHHhcC---CCCCeEEEEEEEE
Confidence 378999999997 999999986 556777766554432 3699999888654
No 122
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=29.50 E-value=1.2e+02 Score=25.35 Aligned_cols=45 Identities=13% Similarity=0.226 Sum_probs=32.0
Q ss_pred EEEEEEEeeecceeEEEcCCceeeeeEccccccc------ccc-----cccccCCEEEEEEEEe
Q 005716 278 CEGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWY------WIR-----HHIKVGMHVIVEILAK 330 (681)
Q Consensus 278 VEGkVtnItdF~GAFVDIGGv~DGLVHISEISW~------rI~-----dVLKVGDeVkVKVLsI 330 (681)
++|+|++|..= .+-|.=| +|.++.|- .+. .-|++||.|.+.+...
T Consensus 6 ~~G~V~~vd~~-~iTi~H~-------pI~~l~wPaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~ 61 (82)
T 2l55_A 6 AVGRIQSIGER-SLIIAHE-------AIPSAQWGAMTMEFAAPPAGLPQGLKAGDRVAFSFRLD 61 (82)
T ss_dssp EEEEEEECCSS-EEEEEEC-------CCTTTTCCCEEEEEECCTTCCCSSCSTTCEEEEEEEEE
T ss_pred EeEEEEEEccc-cEEEecC-------CccccCCCceEEEEEcCChhHhhcCCCCCEEEEEEEEC
Confidence 58999999874 4222222 27888883 333 3799999999999776
No 123
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=28.32 E-value=1.4e+02 Score=25.04 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=32.2
Q ss_pred EEEEEEEEeeecceeEEEcCCceeeeeE--ccccccc------ccc-----cccccCCEEEEEEEEe
Q 005716 277 ICEGKVTTVHLYQGAFVDIGGVYDGWVP--IKGNDWY------WIR-----HHIKVGMHVIVEILAK 330 (681)
Q Consensus 277 IVEGkVtnItdF~GAFVDIGGv~DGLVH--ISEISW~------rI~-----dVLKVGDeVkVKVLsI 330 (681)
.++|+|++|..=.|- | -|=| |.++.|- .+. .-|++||.|.+.+...
T Consensus 17 ~~~G~V~~id~~~~~-i-------Ti~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~ 75 (88)
T 2vb2_X 17 SATGVVKGIDLESKK-I-------TIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQ 75 (88)
T ss_dssp EEEEEEEEEETTTTE-E-------EEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEEEEEE
T ss_pred EEEEEEEEEcCCCCE-E-------EEecCCcccCCCCceEEEEEcCChhhhhcCCCCCEEEEEEEEe
Confidence 478999999864222 2 2334 7778883 333 3799999999999766
No 124
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=27.56 E-value=1.6e+02 Score=24.35 Aligned_cols=46 Identities=22% Similarity=0.251 Sum_probs=32.1
Q ss_pred EEEEEEEEeeecceeEEEcCCceeeeeE--ccccccc------ccc-----cccccCCEEEEEEEEe
Q 005716 277 ICEGKVTTVHLYQGAFVDIGGVYDGWVP--IKGNDWY------WIR-----HHIKVGMHVIVEILAK 330 (681)
Q Consensus 277 IVEGkVtnItdF~GAFVDIGGv~DGLVH--ISEISW~------rI~-----dVLKVGDeVkVKVLsI 330 (681)
..+|+|++|..=+|- --|=| |.++.|- .+. .-|++||.|.+.+...
T Consensus 9 ~~~G~V~~id~~~~~--------iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~ 67 (80)
T 2qcp_X 9 SATGVVKGIDLESKK--------ITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQ 67 (80)
T ss_dssp EEEEEEEEEETTTTE--------EEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEEEEEE
T ss_pred EEEEEEEEEcCCCCE--------EEEEcCCcccCCCCceEEEEEccChhhhhcCCCCCEEEEEEEEe
Confidence 378999999864222 22334 7778883 333 3799999999999766
No 125
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=27.47 E-value=14 Score=35.59 Aligned_cols=34 Identities=15% Similarity=0.104 Sum_probs=29.3
Q ss_pred CCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccCccccceeeehhh
Q 005716 359 FAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNA 413 (681)
Q Consensus 359 vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~hP~VegL~hIs~a 413 (681)
+|-||. |.|.. .++||.||++--.++||+|++..
T Consensus 81 vGEv~~-------G~Is~--------------Vt~fGifVeL~g~~eglv~~s~l 114 (218)
T 2ckz_B 81 LGEIVT-------GWISK--------------CTAEGIKVSLLGIFDDIFIPQNM 114 (218)
T ss_dssp TTCEEE-------EEEEE--------------EETTEEEEECTTSCCCEEEETTT
T ss_pred CCCEEE-------EEEEE--------------EccCcEEEEccCccceEEEcHHH
Confidence 478888 88988 99999999994469999999964
No 126
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=26.86 E-value=72 Score=28.97 Aligned_cols=107 Identities=7% Similarity=0.021 Sum_probs=58.5
Q ss_pred CCchhHHHHHHHHHHH--HHHhccccccccccCC-CCCCCCCCCCCCcchhhhcccCCCCC--CCCEEEEEEEEee----
Q 005716 216 GFNFDMYRVFLKQYNQ--WVAANKDRLEEESYKY-DQDYYPGRRKRGKDYEEGMYELPFYY--PGQICEGKVTTVH---- 286 (681)
Q Consensus 216 ~~~l~r~k~FlkQY~e--WV~aNkdRLe~es~~~-d~e~~PGRDPR~~~f~egv~~L~~Lk--eGqIVEGkVtnIt---- 286 (681)
-+.++||.-=+...++ |=++..-||...--.- ..-+||-|.-=+.-....+.-. .+. .|.++.=+|....
T Consensus 19 ~~e~~~y~~~~~~~~~~fw~~l~~g~L~~~rC~~CG~~~fPPr~~Cp~C~s~~~e~v-~ls~g~GtV~S~Tvv~~~~pgf 97 (145)
T 2gnr_A 19 VMEAERYEYTVGPAGEQFFNGLKQNKIIGSKCSKCGRIFVPARSYCEHCFVKIENYV-EINKDEAYVDSYTIIYNDDEGN 97 (145)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHTTCCEEEECTTTCCEEESCCSEETTTTEECCEEE-ECCGGGCEEEEEEEEEECTTSC
T ss_pred EEEeEeeEcCCChhhHHHHhhhhCCEEEEEEECCCCcEEeCCCCCCCCCCCCccEEE-EccCCcEEEEEEEEEccCCCCc
Confidence 3445577655555433 4444455665543322 2233443332222233333222 233 6888888888765
Q ss_pred ----ecceeEEEcCCceeeeeEcccccccccccccccCCEEEEEEEEe
Q 005716 287 ----LYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAK 330 (681)
Q Consensus 287 ----dF~GAFVDIGGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsI 330 (681)
+|-=|.|+|.++.-.|+|+-+ . + |++||.|+|...++
T Consensus 98 ~~~~Py~valVeLdeg~~r~~~~vd-----~-d-v~iGm~V~~~~~~~ 138 (145)
T 2gnr_A 98 KLAQPVYIALIRFPNIEGGLLCYAE-----G-N-VKVGAKAKILSFQW 138 (145)
T ss_dssp EEEEEEEEEEEECTTCEECEEEEEE-----E-S-CCTTCBCEEEECSS
T ss_pred ccCCCEEEEEEEeCCCCEEEEEecC-----C-C-CCCCCEEEEEEecC
Confidence 232388999754224665422 1 3 99999999998887
No 127
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=24.46 E-value=31 Score=30.34 Aligned_cols=60 Identities=13% Similarity=0.030 Sum_probs=43.0
Q ss_pred EEEEEEEEeeecceeE-EEcCCceeeeeEccccccccccc--ccccCCEEEEEEEEeeCCCCCeeeee
Q 005716 277 ICEGKVTTVHLYQGAF-VDIGGVYDGWVPIKGNDWYWIRH--HIKVGMHVIVEILAKRDPYRFRFPIE 341 (681)
Q Consensus 277 IVEGkVtnItdF~GAF-VDIGGv~DGLVHISEISW~rI~d--VLKVGDeVkVKVLsIdD~eR~RISLS 341 (681)
.+.|+|+..-.- +.| |-|..++.=|.|||. +++. -++.||.|.|.....++..+.||..-
T Consensus 21 e~~g~V~~~lgn-~~~~V~l~nG~~~la~i~G----KmRk~IwI~~GD~VlVe~~~yd~~~Kg~Iv~r 83 (102)
T 1jt8_A 21 EILGIIEQMLGA-SRVRVRCLDGKTRLGRIPG----RLKNRIWVREGDVVIVKPWEVQGDQKCDIIWR 83 (102)
T ss_dssp CEEEEEECSSCS-SEEEEEEETTEEEEEECCH----HHHHHHCCCSCEEEEECCBCCTTSEEEEEEEE
T ss_pred EEEEEEEEEcCC-CEEEEEECCCCEEEEEEcc----cceeeEEecCCCEEEEEeccCCCCceEEEEEE
Confidence 467999999875 555 456555689999985 4433 67889999999888842566676443
No 128
>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III module, structural protein; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=23.87 E-value=42 Score=29.97 Aligned_cols=24 Identities=25% Similarity=0.581 Sum_probs=22.1
Q ss_pred hcccCCCCCCCCEEEEEEEEeeec
Q 005716 265 GMYELPFYYPGQICEGKVTTVHLY 288 (681)
Q Consensus 265 gv~~L~~LkeGqIVEGkVtnItdF 288 (681)
.-|+|..|++|.++||.|.++..|
T Consensus 61 nSYtI~GL~P~~~YE~qv~S~~ry 84 (98)
T 1oww_A 61 NSYTIKGLKPGVVYEGQLISIQQY 84 (98)
T ss_dssp CEEEECSCCSSEEEEEEEEEEESS
T ss_pred ceEEEecCCCCcEEEEEEEEeecc
Confidence 457899999999999999999999
No 129
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein struc initiative; 1.85A {Shewanella oneidensis} SCOP: b.40.14.1
Probab=23.82 E-value=66 Score=28.60 Aligned_cols=44 Identities=23% Similarity=0.238 Sum_probs=28.8
Q ss_pred EEEEEEEeeec-ceeEEEcCCceeeeeEcccccccccccccccCCEEEEEE
Q 005716 278 CEGKVTTVHLY-QGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEI 327 (681)
Q Consensus 278 VEGkVtnItdF-~GAFVDIGGv~DGLVHISEISW~rI~dVLKVGDeVkVKV 327 (681)
+-|+|+.|.+- .=|.||+||+ ..+++-.-+.+-+++||-|.|-+
T Consensus 26 IP~kVveI~~~~~~A~Vd~~Gv------~reV~l~Lv~e~~~vGDyVLVHv 70 (103)
T 3d3r_A 26 IPSQVVAVDNERQSVTVDTLGV------RRDVSSHLMTEPLAIGDYVLIHI 70 (103)
T ss_dssp CCEEEEEEETTTTEEEEEETTE------EEEEECTTBSSCCCTTCEEEEEE
T ss_pred cCEEEEEEeCCCCEEEEEcCCE------EEEEEEEeecCCCCCCCEEEEee
Confidence 34899999731 1399999986 12233333333478899999865
No 130
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=22.11 E-value=2.4e+02 Score=29.61 Aligned_cols=50 Identities=36% Similarity=0.373 Sum_probs=32.3
Q ss_pred CCCE--EEEEEEEeeecce--eEEEcCCceeeee----Eccccc---ccccccccccCCEEEEE
Q 005716 274 PGQI--CEGKVTTVHLYQG--AFVDIGGVYDGWV----PIKGND---WYWIRHHIKVGMHVIVE 326 (681)
Q Consensus 274 eGqI--VEGkVtnItdF~G--AFVDIGGv~DGLV----HISEIS---W~rI~dVLKVGDeVkVK 326 (681)
+|+. |.|.|.++.+. | +||||-.+ .|.| ..+.++ +..+ ..|+.|+.|.|+
T Consensus 15 ~g~~V~v~Gwv~~~R~~-g~~~Fi~LrD~-~g~iQ~v~~~~~~~~~~~~~~-~~l~~~~~V~V~ 75 (438)
T 3nem_A 15 NGQKVKVAGWVWEVKDL-GGIKFLWIRDR-DGIVQITAPKKKVDPELFKLI-PKLRSEDVVAVE 75 (438)
T ss_dssp TTCEEEEEEEEEEEEEE-TTEEEEEEEET-TEEEEEEEETTTSCHHHHHHG-GGCCTTCEEEEE
T ss_pred CCCEEEEEEEEEEEecC-CCeEEEEEEEC-CeeEEEEEeCCcCCHHHHHHH-hcCCCCCEEEEE
Confidence 4665 58999999997 7 69999432 3443 333322 2222 358899999886
No 131
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A
Probab=21.95 E-value=22 Score=37.40 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=40.4
Q ss_pred CCCCCCCCEE-EEEEEEeee--cceeEEEcCCceeeeeEcccccccccccccccCCEEEEEEEEeeCCCCCeeee
Q 005716 269 LPFYYPGQIC-EGKVTTVHL--YQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEILAKRDPYRFRFPI 340 (681)
Q Consensus 269 L~~LkeGqIV-EGkVtnItd--F~GAFVDIGGv~DGLVHISEISW~rI~dVLKVGDeVkVKVLsIdD~eR~RISL 340 (681)
.-.|++|++| +||+.++.. + |..+.+.- .|+-.|+ +.......+|+.||+|++.+-.-.| . .||.+
T Consensus 339 g~tL~pGDlI~TGTpsG~~~~~~-G~~lE~~~--~G~~~v~-l~~g~~~~fL~~GD~V~~~~~~~~~-g-~~igf 407 (421)
T 1hyo_A 339 GCNLRPGDLLASGTISGSDPESF-GSMLELSW--KGTKAID-VGQGQTRTFLLDGDEVIITGHCQGD-G-YRVGF 407 (421)
T ss_dssp SCCCCTTCEEECCCCCCSSGGGC-CBHHHHTT--TTTSCEE-CSTTCEESSCCTTCEEEEEEEEECS-S-CEEEE
T ss_pred CCccCCCCEEEcCCCCCCCCCCC-cceEEEEe--cCcceee-ccCCCCCccCCCCCEEEEEEEECCC-C-ceeee
Confidence 4579999965 799988764 3 54444421 1221111 1222345699999999999997633 2 56644
No 132
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=21.38 E-value=29 Score=33.42 Aligned_cols=36 Identities=3% Similarity=0.007 Sum_probs=33.3
Q ss_pred CCCCccccCCCCCchhhhhccCCCCCCCCCCCCCCCCCcccccCccccceeeehhhh
Q 005716 358 DFAPIFHRDEDKNPDELRRDCGRPPVPRKYPGVKPEEEGLLSTHPYVDKLWQIHNAE 414 (681)
Q Consensus 358 ~vgpI~~r~~d~n~geV~Rd~GRp~~pr~~p~~~~efgafve~hP~VegL~hIs~aE 414 (681)
..|+|+. |+|.. ...+++||.+--..+|++|++...
T Consensus 56 ~~GDiV~-------G~V~~--------------v~~~~a~V~I~~~~~g~l~isev~ 91 (229)
T 2ba0_A 56 SVGDVVI-------GIIRE--------------VAANGWAVDIYSPYQAFLPVSENP 91 (229)
T ss_dssp CTTCEEE-------EEEEE--------------ECSSEEEEECSSSSCEEEEGGGCT
T ss_pred CCCCEEE-------EEEEE--------------EeCCeEEEEeCCCeEEEEEHHHcc
Confidence 6799999 99999 899999999998899999999877
No 133
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=20.57 E-value=1e+02 Score=25.77 Aligned_cols=41 Identities=37% Similarity=0.353 Sum_probs=26.9
Q ss_pred EEEEEEeeecceeEEEcCCceeeeeEcccccccccccccccCCEEEEEE
Q 005716 279 EGKVTTVHLYQGAFVDIGGVYDGWVPIKGNDWYWIRHHIKVGMHVIVEI 327 (681)
Q Consensus 279 EGkVtnItdF~GAFVDIGGv~DGLVHISEISW~rI~dVLKVGDeVkVKV 327 (681)
-|+|+.|.+. =|-||+||+. .++|-.-+.+ +++||-|.|-+
T Consensus 6 P~kVvei~~~-~A~vd~~Gv~------r~V~l~Lv~~-~~vGD~VLVH~ 46 (75)
T 2z1c_A 6 PGKVIEVNGP-VAVVDFGGVK------REVRLDLMPD-TKPGDWVIVHT 46 (75)
T ss_dssp CEEEEEEETT-EEEEEETTEE------EEEECTTSTT-CCTTCEEEEET
T ss_pred cEEEEEECCC-EEEEEcCCEE------EEEEEEEeCC-CCCCCEEEEec
Confidence 4889999553 6999999861 2223222333 58899998753
Done!