BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005717
(681 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 112/548 (20%), Positives = 211/548 (38%), Gaps = 80/548 (14%)
Query: 96 NTSKSRVDIAALGT-----------FEMGAKLLDTLINTTFEGLSGNFHL-VNGQLEPSA 143
N K R++I+ G + G ++ L EGLSGN NG+
Sbjct: 289 NLRKQRIEISRRGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYT 348
Query: 144 FEIFNVIGTSERVIGYWTKEKELLSELNDNNGRATNNLKNPIWPGNTIDQPRKLKIGVPV 203
I + R IGYW++ +++ +D +G + + ++ P
Sbjct: 349 INIMELKTNGPRKIGYWSEVDKMVLTEDDTSGLE----QKTVVVTTILESP--------- 395
Query: 204 REGFTEFIKVVENKNKTT---QVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSF------ 254
++ + N + G+C D+ + + F Y+ DG +
Sbjct: 396 ------YVMMKANHAALAGNERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDAD 447
Query: 255 ----DELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWI 310
+ ++ ++ + D A+ TI R +DF+ P+ G+S+++ + +
Sbjct: 448 TKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFS 507
Query: 311 FLKPLSWDLWLTTGAAFIFTGLVVWVLE----HRINT-EFRGPPQHQ---------IGTI 356
FL PL++++W+ A+I +V++++ + +T EF + Q I
Sbjct: 508 FLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNS 567
Query: 357 FWFSFSTLVFAHRERVVNNLS-RXXXXXXXXXXXXXTQSYTASLTSMLTVQRLQPSFTDV 415
WFS + + +LS R SYTA+L + LTV+R+
Sbjct: 568 LWFSLGAFMQQGADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESA 627
Query: 416 KDIQKN-----GYFVGYQTNSFVK-------DLLTKKLNFNETRLKNYTTSEDYHDAL-S 462
+D+ K G T F + D + + E + TT+E S
Sbjct: 628 EDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKS 687
Query: 463 NGEVAAIFDEIPYIKIFLASYCSRYMMVGPTYRTDGFGFAFPLGSPLVPYISRAILKVTE 522
G+ A + + I C M VG + G+G A P GS L ++ A+LK++E
Sbjct: 688 KGKYAYLLESTMNEYIEQRKPCDT-MKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSE 746
Query: 523 DK--EKMENIEKALGNQATCEGQ-GPTTLSSDSLSVYSFGGLFIIAGIASMSSLLIYVFN 579
+K++N K ++ C + + + +LS+ + G+F I ++L+ +
Sbjct: 747 QGLLDKLKN--KWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIE 804
Query: 580 FVCFHRPE 587
F R E
Sbjct: 805 FCYKSRAE 812
>pdb|3OEK|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Aspartate
pdb|3OEL|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With D- Glutamate
pdb|3OEM|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With N- Methyl-D-Aspartate
pdb|3OEN|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex
With L- Glutamate
Length = 286
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 223 VSGFCYDMFHAVLQVLEFPLPYEFVPFH------DGSFDELLHKIEKQEFDTAVGDTTIV 276
GFC D+ + + F V DG ++ ++ ++ Q D A+G TI
Sbjct: 59 CKGFCIDILKRLAHTIGFSYDLYLVTNGKHGKKIDGVWNGMIGEVFYQRADMAIGSLTIN 118
Query: 277 ANRSTFVDFTLPYSESGVSMLV 298
RS VDF++P+ E+G+S++V
Sbjct: 119 EERSEIVDFSVPFVETGISVMV 140
>pdb|2A5S|A Chain A, Crystal Structure Of The Nr2a Ligand Binding Core In
Complex With Glutamate
pdb|2A5T|B Chain B, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 284
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 18/110 (16%)
Query: 201 VPVREGFTEFIKVVENKNKTTQVS----GFCYDMFHAVLQVLEFPLPYEFVPFHDGS--- 253
VP R+ F+K+ + N+ V GFC D+ + + ++F Y+ +G
Sbjct: 35 VPCRK----FVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFT--YDLYLVTNGKHGK 88
Query: 254 -----FDELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSMLV 298
++ ++ ++ Q AVG TI RS VDF++P+ E+G+S++V
Sbjct: 89 KVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMV 138
>pdb|4H5F|A Chain A, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5F|B Chain B, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5F|C Chain C, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5F|D Chain D, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 1
pdb|4H5G|A Chain A, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 2
pdb|4H5G|B Chain B, Crystal Structure Of An Amino Acid Abc Transporter
Substrate-Binding Protein From Streptococcus Pneumoniae
Canada Mdr_19a Bound To L- Arginine, Form 2
Length = 243
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 209 EFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDT 268
EF +V+ KN QV G DM A+ E + E + SFD +L ++ + D
Sbjct: 26 EFQSLVDGKN---QVVGADIDMAQAIAD--ELGVKLEILSM---SFDNVLTSLQTGKADL 77
Query: 269 AVGDTTIVANRSTFVDFTLPYSESGVSMLVLVKDDER 305
AV + R DF++PY E+ +S LV D E+
Sbjct: 78 AVAGISATDERKEVFDFSIPYYENKISFLVHKADVEK 114
>pdb|4F3P|A Chain A, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
pdb|4F3P|B Chain B, Crystal Structure Of A Glutamine-Binding Periplasmic
Protein From Burkholderia Pseudomallei In Complex With
Glutamine
Length = 249
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 9/145 (6%)
Query: 395 YTASLTSMLTVQRLQPSFTDVKDIQK-NGYFVGYQTNSFVKDLLTKKLNFNETRLKNYTT 453
Y + L +M+ Q + T +K I NG + +T + D + L E R +
Sbjct: 107 YDSGLAAMV-----QANNTTIKSIDDLNGKVIAAKTGTATIDWIKAHLKPKEIR--QFPN 159
Query: 454 SEDYHDALSNGEVAAIFDEIPYIKIFLASYC-SRYMMVGPTYRTDGFGFAFPLGSPLVPY 512
+ + AL G V A + P + F+ + R + G D +G FP GSPLV
Sbjct: 160 IDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPLVAK 219
Query: 513 ISRAILKVTEDKEKMENIEKALGNQ 537
++ + ++ D + +K G++
Sbjct: 220 VNAELARMKADGRYAKIYKKWFGSE 244
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 254 FDELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLK 313
F L+ ++ Q D A+ TI R +DF+ PY +SG++ +V + K+
Sbjct: 71 FAGLIPALQTQNIDVALSGMTIKEERRKAIDFSDPYYDSGLAAMVQANNTTIKSI----- 125
Query: 314 PLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPP 349
DL AA T + W+ H E R P
Sbjct: 126 ---DDLNGKVIAAKTGTATIDWIKAHLKPKEIRQFP 158
>pdb|4IO2|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO2|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Glutamate At 1.37 Angstrom Resolution
pdb|4IO3|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO3|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Aspartate At 1.66 Angstrom Resolution
pdb|4IO4|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO4|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Serine At 1.94 Angstrom Resolution
pdb|4IO5|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO5|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Alanine At 1.72 Angstrom Resolution
pdb|4IO6|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO6|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Methionine At 1.6 Angstrom Resolution
pdb|4IO7|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
pdb|4IO7|B Chain B, Crystal Structure Of The Avglur1 Ligand Binding Domain
Complex With Phenylalanine At 1.9 Angstrom Resolution
Length = 248
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 197 LKIGVPVREGFTEFIKVVENKNK-TTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFD 255
L+IGV FT V++ + TT+++G+ D+ + + F + P + S+
Sbjct: 10 LRIGVIESVPFTIVANVIDTSGRNTTKLTGYVLDLIEYLRDKMGFVADVQLAP-PNTSYT 68
Query: 256 ELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSMLV 298
L+ + ++D A+GD T+ + R V F+ S++ + +L+
Sbjct: 69 GLVLALANGDYDIAIGDITVTSARREIVAFSNSISDNSMRILM 111
>pdb|3S9E|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|3S9E|B Chain B, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|4E0W|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With Kainate
pdb|4G8N|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3
Ligand-Binding Domain In Complex With The Agonist G8m
Length = 258
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 11/112 (9%)
Query: 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSF 254
R L + + E F F K + G+C D+ + +L F YE DG +
Sbjct: 6 RSLIVTTLLEEPFVMFRKSDRTLYGNDRFEGYCIDLLKELAHILGFS--YEIRLVEDGKY 63
Query: 255 ---------DELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSML 297
+ ++ ++ + D AV TI R +DF+ P+ GVS+L
Sbjct: 64 GAQDDKGQWNGMVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSIL 115
>pdb|3U92|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U92|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U93|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U93|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U94|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|C Chain C, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|D Chain D, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
Length = 257
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 11/112 (9%)
Query: 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSF 254
R L + + E F F K + G+C D+ + +L F YE DG +
Sbjct: 4 RSLIVTTLLEEPFVMFRKSDRTLYGNDRFEGYCIDLLKELAHILGFS--YEIRLVEDGKY 61
Query: 255 ---------DELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSML 297
+ ++ ++ + D AV TI R +DF+ P+ GVS+L
Sbjct: 62 GAQDDKGQWNGMVKELIDHKADLAVAPLTITHVREKAIDFSKPFMTLGVSIL 113
>pdb|2V3T|A Chain A, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
pdb|2V3T|B Chain B, Structure Of The Ligand-Binding Core Of The Ionotropic
Glutamate Receptor-Like Glurdelta2 In The Apo Form
Length = 265
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 210 FIKVVENK-NKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFH-------DGSFDELLHKI 261
F+ V EN K + GF D+ A+ L F P H DG+++ L+ ++
Sbjct: 15 FVXVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGEL 74
Query: 262 EKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSMLV 298
+ D + TI +R VDFT Y + V +L+
Sbjct: 75 VFKRADIGISALTITPDRENVVDFTTRYXDYSVGVLL 111
>pdb|2V3U|A Chain A, Structure Of The Ligand-binding Core Of The Ionotropic
Glutamate Receptor-like Glurdelta2 In Complex With D-
Serine
Length = 265
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 210 FIKVVENK-NKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFH-------DGSFDELLHKI 261
F+ V EN K + GF D+ A+ L F P H DG+++ L+ ++
Sbjct: 15 FVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGEL 74
Query: 262 EKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSMLV 298
+ D + TI +R VDFT Y + V +L+
Sbjct: 75 VFKRADIGISALTITPDRENVVDFTTRYMDYSVGVLL 111
>pdb|2ZNS|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With
Glutamate
pdb|2ZNT|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Dysiherbaine
pdb|2ZNU|A Chain A, Crystal Structure Of The Ligand-Binding Core Of The Human
Ionotropic Glutamate Receptor, Glur5, In Complex With A
Novel Selective Agonist, Neodysiherbaine A
pdb|3FUZ|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FUZ|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With L-Glutamate In
Space Group P1
pdb|3FV1|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV1|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Dysiherbaine In
Space Group P1
pdb|3FV2|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FV2|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Neodysiherbaine A
In Space Group P1
pdb|3FVG|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVG|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With Msviii-19 In Space
Group P1
pdb|3FVK|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVK|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
8-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVN|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand- Binding Core In Complex With
9-Deoxy-Neodysiherbaine A In Space Group P1
pdb|3FVO|A Chain A, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
pdb|3FVO|B Chain B, Crystal Structure Of The Human Glutamate Receptor, Glur5,
Ligand-Binding Core In Complex With
8-Epi-Neodysiherbaine A In Space Group P1
Length = 256
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 225 GFCYDMFHAVLQVLEFPLPYEFVP-------FHDGSFDELLHKIEKQEFDTAVGDTTIVA 277
G+C D+ + +L F + VP G ++ ++ ++ D AV TI
Sbjct: 33 GYCLDLLKELSNILGFIYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITY 92
Query: 278 NRSTFVDFTLPYSESGVSML 297
R +DF+ P+ G+S+L
Sbjct: 93 VREKVIDFSKPFMTLGISIL 112
>pdb|1YCJ|A Chain A, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1YCJ|B Chain B, Crystal Structure Of The Kainate Receptor Glur5 Ligand-
Binding Core In Complex With (S)-Glutamate
pdb|1VSO|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Antagonist (S)-Atpo At 1.85 A
Resolution
pdb|2PBW|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|2PBW|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Iglur5 In
Complex With The Partial Agonist Domoic Acid At 2.5 A
Resolution
pdb|3GBA|A Chain A, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|B Chain B, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|C Chain C, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBA|D Chain D, X-Ray Structure Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Dysiherbaine At 1.35a Resolution
pdb|3GBB|A Chain A, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3GBB|B Chain B, X-Ray Strucutre Of Iglur5 Ligand-Binding Core (S1s2) In
Complex With Msviii-19 At 2.10a Resolution
pdb|3S2V|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|3S2V|B Chain B, Crystal Structure Of The Ligand Binding Domain Of Gluk1 In
Complex With An Antagonist
(S)-1-(2'-Amino-2'-Carboxyethyl)-3-[(2-
Carboxythien-3-Yl)methyl]thieno[3,4-D]pyrimidin-2,
4-Dione At 2.5 A Resolution
pdb|4E0X|A Chain A, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4E0X|B Chain B, Crystal Structure Of The Kainate Receptor Gluk1
Ligand-Binding Domain In Complex With Kainate In The
Absence Of Glycerol
pdb|4DLD|A Chain A, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
pdb|4DLD|B Chain B, Crystal Structure Of The Gluk1 Ligand-Binding Domain
(S1s2) In Complex With The Antagonist
(S)-2-Amino-3-(2-(2-Carboxyethyl)-5-Chloro-4-
Nitrophenyl)propionic Acid At 2.0 A Resolution
Length = 257
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 225 GFCYDMFHAVLQVLEFPLPYEFVP-------FHDGSFDELLHKIEKQEFDTAVGDTTIVA 277
G+C D+ + +L F + VP G ++ ++ ++ D AV TI
Sbjct: 34 GYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITY 93
Query: 278 NRSTFVDFTLPYSESGVSML 297
R +DF+ P+ G+S+L
Sbjct: 94 VREKVIDFSKPFMTLGISIL 113
>pdb|2F34|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F34|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Ubp310 At 1.74 Angstroms Resolution
pdb|2F35|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F35|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core With
Ubp302 At 1.87 Angstroms Resolution
pdb|2F36|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2F36|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
With Glutamate At 2.1 Angstroms Resolution
pdb|2OJT|A Chain A, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2OJT|B Chain B, Structure And Mechanism Of Kainate Receptor Modulation By
Anions
pdb|2QS1|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS1|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp315 At 1.80 Angstroms Resolution
pdb|2QS2|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS2|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp318 At 1.80 Angstroms Resolution
pdb|2QS3|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS3|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ubp316 At 1.76 Angstroms Resolution
pdb|2QS4|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|B Chain B, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|C Chain C, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
pdb|2QS4|D Chain D, Crystal Structure Of The Glur5 Ligand Binding Core Dimer
In Complex With Ly466195 At 1.58 Angstroms Resolution
Length = 258
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 225 GFCYDMFHAVLQVLEFPLPYEFVP-------FHDGSFDELLHKIEKQEFDTAVGDTTIVA 277
G+C D+ + +L F + VP G ++ ++ ++ D AV TI
Sbjct: 34 GYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITY 93
Query: 278 NRSTFVDFTLPYSESGVSML 297
R +DF+ P+ G+S+L
Sbjct: 94 VREKVIDFSKPFMTLGISIL 113
>pdb|2WKY|A Chain A, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
pdb|2WKY|B Chain B, Crystal Structure Of The Ligand-Binding Core Of Glur5 In
Complex With The Agonist 4-Ahcp
Length = 258
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 225 GFCYDMFHAVLQVLEFPLPYEFVP-------FHDGSFDELLHKIEKQEFDTAVGDTTIVA 277
G+C D+ + +L F + VP G ++ ++ ++ D AV TI
Sbjct: 34 GYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITY 93
Query: 278 NRSTFVDFTLPYSESGVSML 297
R +DF+ P+ G+S+L
Sbjct: 94 VREKVIDFSKPFMTLGISIL 113
>pdb|1TXF|A Chain A, Crystal Structure Of The Glur5 Ligand Binding Core In
Complex With Glutamate At 2.1 Angstrom Resolution
pdb|3C31|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C31|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Lithium At 1.49 Angstrom Resolution
pdb|3C32|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C32|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Sodium At 1.72 Angstrom Resolution
pdb|3C33|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C33|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Potassium At 1.78 Angstrom Resolution
pdb|3C34|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C34|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Rubidium At 1.82 Angstrom Resolution
pdb|3C35|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C35|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Cesium At 1.97 Angstrom Resolution
pdb|3C36|A Chain A, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
pdb|3C36|B Chain B, Crystal Structure Of Glur5 Ligand-Binding Core In Complex
With Ammonium Ions At 1.68 Angstrom Resolution
Length = 258
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 225 GFCYDMFHAVLQVLEFPLPYEFVP-------FHDGSFDELLHKIEKQEFDTAVGDTTIVA 277
G+C D+ + +L F + VP G ++ ++ ++ D AV TI
Sbjct: 34 GYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADLAVAPLTITY 93
Query: 278 NRSTFVDFTLPYSESGVSML 297
R +DF+ P+ G+S+L
Sbjct: 94 VREKVIDFSKPFMTLGISIL 113
>pdb|1GGG|A Chain A, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1GGG|B Chain B, Glutamine Binding Protein Open Ligand-Free Structure
pdb|1WDN|A Chain A, Glutamine-Binding Protein
Length = 226
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 225 GFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTTIVANRSTFVD 284
GF D++ A+ + E L YE P F ++ ++ + D A+ TI R +D
Sbjct: 26 GFDVDLWAAIAK--ELKLDYELKPM---DFSGIIPALQTKNVDLALAGITITDERKKAID 80
Query: 285 FTLPYSESGVSMLVLVKDDERKN 307
F+ Y +SG+ ++V +++ K+
Sbjct: 81 FSDGYYKSGLLVMVKANNNDVKS 103
>pdb|4I62|A Chain A, 1.05 Angstrom Crystal Structure Of An Amino Acid Abc
Transporter Substrate-Binding Protein From Streptococcus
Pneumoniae Canada Mdr_19a Bound To L-Arginine
Length = 269
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 209 EFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDT 268
E+ KVV+ KN Q+ G ++ A+ E + E P SFD +L ++ + D
Sbjct: 53 EYQKVVDGKN---QIVGSDIELAKAI--ATELGVELELSPM---SFDNVLASVQSGKADL 104
Query: 269 AVGDTTIVANRSTFVDFTLPY 289
A+ + RS DF+ PY
Sbjct: 105 AISGVSKTDERSKVFDFSTPY 125
>pdb|3MPL|A Chain A, Crystal Structure Of Bordetella Pertussis Bvgs Vft2 Domain
(Double Mutant F375eQ461E)
Length = 267
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 233 AVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSES 292
AVLQ+L+ +F + +EL+ K+ E D A G + + R +F+ F+ PY +
Sbjct: 60 AVLQLLQLRTGLDFEIIGVDTVEELIAKLRSGEADMA-GALEVNSARESFLSFSRPYVRN 118
Query: 293 GVSMLVLVKDD 303
G M+++ + D
Sbjct: 119 G--MVIVTRQD 127
>pdb|1YAE|A Chain A, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|B Chain B, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|C Chain C, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|D Chain D, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|E Chain E, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
pdb|1YAE|F Chain F, Structure Of The Kainate Receptor Subunit Glur6 Agonist
Binding Domain Complexed With Domoic Acid
Length = 312
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 14/123 (11%)
Query: 187 PGNTIDQ--PRKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPY 244
P N D R L + + E + F K + + G+C D+ + +L F Y
Sbjct: 3 PANITDSLSNRSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFT--Y 60
Query: 245 EFVPFHDGSF----------DELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGV 294
E DG + + ++ ++ + D AV I R +DF+ P+ G+
Sbjct: 61 EIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGI 120
Query: 295 SML 297
S+L
Sbjct: 121 SIL 123
>pdb|2Y7I|A Chain A, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351.
pdb|2Y7I|B Chain B, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351
Length = 229
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 12/107 (11%)
Query: 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSF 254
R L G EF+ +NK + GF D+ +AV + ++ F + SF
Sbjct: 6 RTLHFGTSATYAPYEFVDA-DNK-----IVGFDIDVANAVCKEMQAE-----CSFTNQSF 54
Query: 255 DELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSMLVLVK 301
D L+ + ++FD + + R V F+ PY E G+S +V+ +
Sbjct: 55 DSLIPSLRFKKFDAVIAGMDMTPKREQQVSFSQPYYE-GLSAVVVTR 100
>pdb|3TQL|A Chain A, Structure Of The Amino Acid Abc Transporter, Periplasmic
Amino Acid- Binding Protein From Coxiella Burnetii
Length = 227
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 222 QVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTTIVANRST 281
QV GF D+ AV + + + +D L+ ++ +FD G I R
Sbjct: 23 QVEGFGADIVKAVCKQXQ-----AVCTISNQPWDSLIPSLKLGKFDALFGGXNITTARQK 77
Query: 282 FVDFTLPYSESGVSML 297
VDFT PY + VS +
Sbjct: 78 EVDFTDPYYTNSVSFI 93
>pdb|2I0C|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
pdb|2I0C|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Dimer
Crosslinked By Disulfide Bonds Between Y490c And L752c
At 2.25 Angstroms Resolution
Length = 259
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSF 254
R L + + E + F K + + G+C D+ + +L F YE DG +
Sbjct: 4 RSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFT--YEIRLVEDGKY 61
Query: 255 ----------DELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSML 297
+ ++ ++ + D AV I R +DF+ P+ G+S+L
Sbjct: 62 GAQDDVNGQWNGMVRELIDHKADLAVAPLAITCVREKVIDFSKPFMTLGISIL 114
>pdb|2Q2C|A Chain A, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|B Chain B, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|C Chain C, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2C|D Chain D, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2PVU|A Chain A, Crystal Structures Of The Arginine-, Lysine-,
Histidine-Binding Protein Artj From The Thermophilic
Bacterium Geobacillus Stearothermophilus
pdb|2Q2A|A Chain A, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|B Chain B, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|C Chain C, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
pdb|2Q2A|D Chain D, Crystal Structures Of The Arginine-, Lysine-, Histidine-
Binding Protein Artj From The Thermophilic Bacterium
Geobacillus Stearothermophilus
Length = 272
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 222 QVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTTIVANRST 281
++ GF D+ AV++ L YE + +D L ++ +E D + TI R
Sbjct: 62 KIVGFDVDLLDAVMKAA--GLDYEL---KNIGWDPLFASLQSKEVDMGISGITITDERKQ 116
Query: 282 FVDFTLPYSESGVSMLVLVK 301
DF+ PY E+ + ++LVK
Sbjct: 117 SYDFSDPYFEA--TQVILVK 134
>pdb|3MPK|A Chain A, Crystal Structure Of Bordetella Pertussis Bvgs Periplasmic
Vft2 Domain
Length = 267
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 233 AVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSES 292
AVLQ+L+ +F + +EL+ K+ E D A G + + R +F+ F+ PY +
Sbjct: 60 AVLQLLQLRTGLDFEIIGVDTVEELIAKLRSGEADMA-GALFVNSARESFLSFSRPYVRN 118
Query: 293 GVSMLVLVKDD 303
G M+++ + D
Sbjct: 119 G--MVIVTRQD 127
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
pdb|4F12|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Gaba(B) Receptor Gbr2
Length = 433
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 24 MESMQGVLGLRPYIPSSKKLEHFK----LRWIKSADKPDGSTGGSNLFGLWAYDTVWAIA 79
+ +M+G +G+ SSK+++ ++ + + G S G +AYD +W IA
Sbjct: 267 LAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSGVGPSKFHG-YAYDGIWVIA 325
Query: 80 MAVERAGIENSSFLKSNTSKSRVDIAALGTFEMGAKLLDTLINTTFEGLSGNFHLVNGQ 138
++RA L +++ R+ +G +L+ + T F G++G NG+
Sbjct: 326 KTLQRA----METLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVFRNGE 380
>pdb|3K4U|A Chain A, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|B Chain B, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|C Chain C, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|D Chain D, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|E Chain E, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
pdb|3K4U|F Chain F, Crystal Structure Of Putative Binding Component Of Abc
Transporter From Wolinella Succinogenes Dsm 1740
Complexed With Lysine
Length = 245
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 215 ENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274
E K+K V GF D+ + L + VP S+D L+ + ++FD + T
Sbjct: 19 EXKDKKGNVIGFDVDLAREXAKAXGVKL--KLVP---TSWDGLIPGLVTEKFDIIISGXT 73
Query: 275 IVANRSTFVDFTLPYSESGVSMLV 298
I R+ V+F PY G S+LV
Sbjct: 74 ISQERNLRVNFVEPYIVVGQSLLV 97
>pdb|3G3G|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
pdb|3G3G|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r Mutant With Glutamate And Nacl At 1.3 Angstrom
Resolution
Length = 259
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSF 254
R L + + E + F K + + G+C D+ + +L F YE DG +
Sbjct: 4 RSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFT--YEIRLVEDGKY 61
Query: 255 ----------DELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSML 297
+ ++ ++ + D AV I R +DF+ P+ G+S+L
Sbjct: 62 GAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|2XXR|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXR|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Glutamate
pdb|2XXT|A Chain A, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
pdb|2XXT|B Chain B, Crystal Structure Of The Gluk2 (Glur6) Wild-Type Lbd Dimer
In Complex With Kainate
Length = 261
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSF 254
R L + + E + F K + + G+C D+ + +L F YE DG +
Sbjct: 4 RSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFT--YEIRLVEDGKY 61
Query: 255 ----------DELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSML 297
+ ++ ++ + D AV I R +DF+ P+ G+S+L
Sbjct: 62 GAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|3G3H|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
pdb|3G3H|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
K665r I749l Q753k Mutant With Glutamate And Nacl At 1.5
Angstrom Resolution
Length = 259
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSF 254
R L + + E + F K + + G+C D+ + +L F YE DG +
Sbjct: 4 RSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFT--YEIRLVEDGKY 61
Query: 255 ----------DELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSML 297
+ ++ ++ + D AV I R +DF+ P+ G+S+L
Sbjct: 62 GAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|2XXW|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXW|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate
pdb|2XXX|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXX|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Glutamate (P21 21 21)
pdb|2XXY|A Chain A, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|B Chain B, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|C Chain C, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
pdb|2XXY|D Chain D, Crystal Structure Of The Gluk2 (Glur6) D776k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSF 254
R L + + E + F K + + G+C D+ + +L F YE DG +
Sbjct: 4 RSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFT--YEIRLVEDGKY 61
Query: 255 ----------DELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSML 297
+ ++ ++ + D AV I R +DF+ P+ G+S+L
Sbjct: 62 GAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|2XXU|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXU|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Glutamate
pdb|2XXV|A Chain A, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
pdb|2XXV|B Chain B, Crystal Structure Of The Gluk2 (Glur6) M770k Lbd Dimer In
Complex With Kainate
Length = 261
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSF 254
R L + + E + F K + + G+C D+ + +L F YE DG +
Sbjct: 4 RSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFT--YEIRLVEDGKY 61
Query: 255 ----------DELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSML 297
+ ++ ++ + D AV I R +DF+ P+ G+S+L
Sbjct: 62 GAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|3QXM|A Chain A, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
pdb|3QXM|B Chain B, Crystal Structure Of Human Gluk2 Ligand-Binding Core In
Complex With Novel Marine-Derived Toxins,
Neodysiherbaine A
Length = 258
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSF 254
R L + + E + F K + + G+C D+ + +L F YE DG +
Sbjct: 3 RSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFT--YEIRLVEDGKY 60
Query: 255 ----------DELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSML 297
+ ++ ++ + D AV I R +DF+ P+ G+S+L
Sbjct: 61 GAQDDANGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISIL 113
>pdb|1S50|A Chain A, X-Ray Structure Of The Glur6 Ligand Binding Core (S1s2a)
In Complex With Glutamate At 1.65 A Resolution
pdb|1S7Y|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S7Y|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Glutamate At 1.75 A Resolution Orthorhombic
Form
pdb|1S9T|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1S9T|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Quisqualate At 1.8a Resolution
pdb|1SD3|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1SD3|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With 2s,4r-4-Methylglutamate At 1.8 Angstrom
Resolution
pdb|1TT1|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|1TT1|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core In
Complex With Kainate 1.93 A Resolution
pdb|3G3F|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
pdb|3G3F|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
With Glutamate And Nacl At 1.38 Angstrom Resolution
Length = 259
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSF 254
R L + + E + F K + + G+C D+ + +L F YE DG +
Sbjct: 4 RSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFT--YEIRLVEDGKY 61
Query: 255 ----------DELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSML 297
+ ++ ++ + D AV I R +DF+ P+ G+S+L
Sbjct: 62 GAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISIL 114
>pdb|2I0B|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
pdb|2I0B|C Chain C, Crystal Structure Of The Glur6 Ligand Binding Core Elkq
Mutant Dimer At 1.96 Angstroms Resolution
Length = 259
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSF 254
R L + + E + F K + + G+C D+ + +L F YE DG +
Sbjct: 4 RSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFT--YEIRLVEDGKY 61
Query: 255 ----------DELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSML 297
+ ++ ++ + D AV I R +DF+ P+ G+S+L
Sbjct: 62 GAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREEVIDFSKPFMTLGISIL 114
>pdb|1PB8|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Serine At 1.45 Angstroms Resolution
pdb|1PB9|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With D-Cycloserine At 1.60 Angstroms Resolution
Length = 292
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 16/88 (18%)
Query: 225 GFCYDMFHAVLQVLEFPLPYEFVPFHDGSF--DELLHKIEKQEF------------DTAV 270
GFC D+ + + + F YE DG F E ++ K+E+ D V
Sbjct: 65 GFCIDLLIKLARTMNF--TYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIV 122
Query: 271 GDTTIVANRSTFVDFTLPYSESGVSMLV 298
TI R+ +++F+ P+ G+++LV
Sbjct: 123 APLTINTERAQYIEFSKPFKYQGLTILV 150
>pdb|1PB7|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Glycine At 1.35 Angstroms Resolution
pdb|1PBQ|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1PBQ|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With 5,7-Dichlorokynurenic Acid (Dcka) At 1.90
Angstroms Resolution
pdb|1Y1M|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1M|B Chain B, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Cycloleucine
pdb|1Y1Z|A Chain A, Crystal Structure Of The Nr1 Ligand Binding Core In
Complex With Acbc
pdb|1Y20|A Chain A, Crystal Structure Of The Nr1 Ligand-binding Core In
Complex With Acpc
pdb|2A5T|A Chain A, Crystal Structure Of The Nr1NR2A LIGAND-Binding Cores
Complex
Length = 292
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 16/88 (18%)
Query: 225 GFCYDMFHAVLQVLEFPLPYEFVPFHDGSF--DELLHKIEKQEF------------DTAV 270
GFC D+ + + + F YE DG F E ++ K+E+ D V
Sbjct: 65 GFCIDLLIKLARTMNF--TYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIV 122
Query: 271 GDTTIVANRSTFVDFTLPYSESGVSMLV 298
TI R+ +++F+ P+ G+++LV
Sbjct: 123 APLTINNERAQYIEFSKPFKYQGLTILV 150
>pdb|2PYY|A Chain A, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|C Chain C, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
pdb|2PYY|B Chain B, Crystal Structure Of The Glur0 Ligand-Binding Core From
Nostoc Punctiforme In Complex With (L)-Glutamate
Length = 228
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 213 VVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGD 272
V+ NK ++SGF D++ ++ + + + + + S EL+ I+ + + +
Sbjct: 16 VLSNKG---ELSGFSIDLWRSI--ATQIGIESKLIEY--SSVPELISAIKDNKVNLGIAA 68
Query: 273 TTIVANRSTFVDFTLPYSESGVSMLV 298
+I A R DF+LP SG+ ++V
Sbjct: 69 ISITAEREQNFDFSLPIFASGLQIMV 94
>pdb|1IIT|A Chain A, Glur0 Ligand Binding Core Complex With L-Serine
pdb|1IIW|A Chain A, Glur0 Ligand Binding Core: Closed-Cleft Ligand-Free
Structure
Length = 232
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 197 LKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDE 256
LK+GV G F+ E KN +G D++ AV + ++ Y S
Sbjct: 6 LKVGV---VGNPPFVFYGEGKNAA--FTGISLDVWRAVAESQKWNSEY----VRQNSISA 56
Query: 257 LLHKIEKQEFDTAVGDTTIVANRSTF--VDFTLPYSESGVSMLV 298
+ + + E D +G ++ R+ + FT PY SG+ +L+
Sbjct: 57 GITAVAEGELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLI 100
>pdb|1II5|A Chain A, Crystal Structure Of The Glur0 Ligand Binding Core Complex
With L- Glutamate
Length = 233
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 197 LKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDE 256
LK+GV G F+ E KN +G D++ AV + ++ Y S
Sbjct: 6 LKVGV---VGNPPFVFYGEGKNAA--FTGISLDVWRAVAESQKWNSEY----VRQNSISA 56
Query: 257 LLHKIEKQEFDTAVGDTTIVANRSTF--VDFTLPYSESGVSMLV 298
+ + + E D +G ++ R+ + FT PY SG+ +L+
Sbjct: 57 GITAVAEGELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLI 100
>pdb|3G3K|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
pdb|3G3K|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k E757q Mutant With
Glutamate And Nacl At 1.24 Angstrom Resolution
Length = 259
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 12/113 (10%)
Query: 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSF 254
R L + + E + F K + + G+C D+ + L F YE DG +
Sbjct: 4 RSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFT--YEIRLVEDGKY 61
Query: 255 ----------DELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSML 297
+ ++ ++ + D AV I R +DF+ P+ G+S+L
Sbjct: 62 GAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREEVIDFSKPFMTLGISIL 114
>pdb|3G3J|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
pdb|3G3J|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e K665r I749l Q753k Mutant With Glutamate And
Nacl At 1.32 Angstrom Resolution
Length = 259
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 12/113 (10%)
Query: 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSF 254
R L + + E + F K + + G+C D+ + L F YE DG +
Sbjct: 4 RSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFT--YEIRLVEDGKY 61
Query: 255 ----------DELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSML 297
+ ++ ++ + D AV I R +DF+ P+ G+S+L
Sbjct: 62 GAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREEVIDFSKPFMTLGISIL 114
>pdb|3G3I|A Chain A, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
pdb|3G3I|B Chain B, Crystal Structure Of The Glur6 Ligand Binding Domain Dimer
I442h K494e I749l Q753k Mutant With Glutamate And Nacl
At 1.37 Angstrom Resolution
Length = 259
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 12/113 (10%)
Query: 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSF 254
R L + + E + F K + + G+C D+ + L F YE DG +
Sbjct: 4 RSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFT--YEIRLVEDGKY 61
Query: 255 ----------DELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSML 297
+ ++ ++ + D AV I R +DF+ P+ G+S+L
Sbjct: 62 GAQDDVNGQWNGMVRELIDHKADLAVAPLAITYVREEVIDFSKPFMTLGISIL 114
>pdb|2RCA|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
pdb|2RCB|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCB|B Chain B, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With D- Serine At 1.62 Angstrom Resolution
pdb|2RCA|A Chain A, Crystal Structure Of The Nr3b Ligand Binding Core Complex
With Glycine At 1.58 Angstrom Resolution
Length = 292
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 225 GFCYDMFHAVLQVLEFPLPYEFV------PFHDGSFDELLHKIEKQEFDTAVGDTTIVAN 278
G+C D+ + + L F V DG + L+ + AV +I +
Sbjct: 68 GYCIDLLERLAEDLAFDFELYIVGDGKYGALRDGRWTGLVGDLLAGRAHMAVTSFSINSA 127
Query: 279 RSTFVDFTLPYSESGVSMLVLVKDDE 304
RS VDFT P+ + + ++V + E
Sbjct: 128 RSQVVDFTSPFFSTSLGIMVRTRGTE 153
>pdb|3KZG|A Chain A, Crystal Structure Of An Arginine 3rd Transport System
Periplasmic Binding Protein From Legionella Pneumophila
pdb|3KZG|B Chain B, Crystal Structure Of An Arginine 3rd Transport System
Periplasmic Binding Protein From Legionella Pneumophila
pdb|3KZG|C Chain C, Crystal Structure Of An Arginine 3rd Transport System
Periplasmic Binding Protein From Legionella Pneumophila
pdb|3KZG|D Chain D, Crystal Structure Of An Arginine 3rd Transport System
Periplasmic Binding Protein From Legionella Pneumophila
Length = 237
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 221 TQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTTIVANRS 280
+ + GF D+ + + L +E F D+L ++ +E D + I R
Sbjct: 24 SSLYGFDIDLXQEICRRLHATCTFEAYIF-----DDLFPALKNREVDLVIASXIITDERK 78
Query: 281 TFVDFTLPYSESGVSMLVLV 300
F+LPY ES + V
Sbjct: 79 KHFIFSLPYXESNSQYITTV 98
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With
Ly3414 Antagonist
Length = 481
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 113 GAKLLDTLINTTFEGLSGNFHLVNGQLE-PSAFEIF-----NVIGTSERVIGYWTKEKEL 166
G KLL + N F G +G + N + P ++IF N R+IG WT E +L
Sbjct: 413 GKKLLKYIRNVNFNGSAGTPVMFNKNGDAPGRYDIFQYQTTNTSNPGYRLIGQWTDELQL 472
>pdb|2XX7|A Chain A, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|B Chain B, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution.
pdb|2XX7|C Chain C, Crystal Structure Of
1-(4-(1-Pyrrolidinylcarbonyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 2.2a Resolution
Length = 291
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 488 MMVGPTYRTDGFGFAFPLGSPLVPYISRAILKVTE 522
M VG + G+G A P GS L ++ A+LK++E
Sbjct: 238 MKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLSE 272
>pdb|1LBC|A Chain A, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|B Chain B, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|1LBC|C Chain C, Crystal Structure Of Glur2 Ligand Binding Core (S1s2j-
N775s) In Complex With Cyclothiazide (Ctz) As Well As
Glutamate At 1.8 A Resolution
pdb|3H6T|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6T|C Chain C, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And
Cyclothiazide At 2.25 A Resolution
pdb|3H6U|A Chain A, Crystal Structure Of The Iglur2 Ligand-binding Core
(s1s2j-n754s) In Complex With Glutamate And Ns1493 At
1.85 A Resolution
pdb|3H6V|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6V|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5206 At
2.10 A Resolution
pdb|3H6W|A Chain A, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3H6W|B Chain B, Crystal Structure Of The Iglur2 Ligand-Binding Core
(S1s2j-N754s) In Complex With Glutamate And Ns5217 At
1.50 A Resolution
pdb|3KGC|A Chain A, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3KGC|B Chain B, Isolated Ligand Binding Domain Dimer Of Glua2 Ionotropic
Glutamate Receptor In Complex With Glutamate, Ly 404187
And Zk 200775
pdb|3BBR|A Chain A, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|3BBR|B Chain B, Crystal Structure Of The Iglur2 Ligand Binding Core
(S1s2j-N775s) In Complex With A Dimeric Positive
Modulator As Well As Glutamate At 2.25 A Resolution
pdb|2XX9|A Chain A, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|B Chain B, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XX9|C Chain C, Crystal Structure Of
1-((2-Fluoro-4-(3-(Trifluoromethyl)-4,5,6,7-
Tetrahydro-1h-Indazol-1-Yl)phenyl)methyl)-2-
Pyrrolidinone In Complex With The Ligand Binding Domain
Of The Rat Glua2 Receptor And Glutamate At 2.2a
Resolution.
pdb|2XXH|A Chain A, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|B Chain B, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXH|C Chain C, Crystal Structure Of
1-(4-(2-Oxo-2-(1-Pyrrolidinyl)ethyl)phenyl)-3-
(Trifluoromethyl)-4,5,6,7-Tetrahydro-1h-Indazole In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.5a Resolution.
pdb|2XXI|A Chain A, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|B Chain B, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XXI|C Chain C, Crystal Structure Of
1-((4-(3-(Trifluoromethyl)-6,7-Dihydropyrano(4,3
-C(Pyrazol-1(4h)-Yl)phenyl)methyl)-2-Pyrrolidinone In
Complex With The Ligand Binding Domain Of The Rat Glua2
Receptor And Glutamate At 1.6a Resolution.
pdb|2XX8|A Chain A, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|B Chain B, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution.
pdb|2XX8|C Chain C, Crystal Structure Of
N,N-Dimethyl-4-(3-(Trifluoromethyl)-4,
5,6,7-Tetrahydro-1h-Indazol-1-Yl)benzamide In Complex
With The Ligand Binding Domain Of The Rat Glua2 Receptor
And Glutamate At 2.2a Resolution
Length = 263
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 488 MMVGPTYRTDGFGFAFPLGSPLVPYISRAILKVTE 522
M VG + G+G A P GS L ++ A+LK++E
Sbjct: 209 MKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLSE 243
>pdb|3TDJ|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TDJ|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Bpam-97 At 1.95 A Resolution
pdb|3TKD|A Chain A, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
pdb|3TKD|B Chain B, Crystal Structure Of The Glua2 Ligand-Binding Domain
(S1s2j-L483y- N754s) In Complex With Glutamate And
Cyclothiazide At 1.45 A Resolution
Length = 263
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 488 MMVGPTYRTDGFGFAFPLGSPLVPYISRAILKVTE 522
M VG + G+G A P GS L ++ A+LK++E
Sbjct: 209 MKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLSE 243
>pdb|1VJZ|A Chain A, Crystal Structure Of Endoglucanase (Tm1752) From
Thermotoga Maritima At 2.05 A Resolution
Length = 341
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 9 IATQGLSTLLDPVKDMESMQGVLGLRPYIPSSKKLEHFKLRWIKSADKP 57
I GL PV D+ V R YIP S + H+K W+ S D P
Sbjct: 185 IIIDGLGYGNIPVDDLTIENTVQSCRGYIPFS--VTHYKAEWVDSKDFP 231
>pdb|3IJO|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJO|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Althiazide
pdb|3IJX|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|D Chain D, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IJX|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydrochlorothiazide
pdb|3IK6|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IK6|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Chlorothiazide
pdb|3IL1|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3IL1|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Idra-21
pdb|3ILT|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILT|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Trichlormethiazide
pdb|3ILU|B Chain B, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|E Chain E, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3ILU|H Chain H, Crystal Structure Of The Ampa Subunit Glur2 Bound To The
Allosteric Modulator, Hydroflumethiazide
pdb|3LSF|B Chain B, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|E Chain E, Piracetam Bound To The Ligand Binding Domain Of Glua2
pdb|3LSF|H Chain H, Piracetam Bound To The Ligand Binding Domain Of Glua2
Length = 258
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 488 MMVGPTYRTDGFGFAFPLGSPLVPYISRAILKVTE 522
M VG + G+G A P GS L ++ A+LK++E
Sbjct: 206 MKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLSE 240
>pdb|2UXA|A Chain A, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|B Chain B, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED.
pdb|2UXA|C Chain C, Crystal Structure Of The Glur2-Flip Ligand Binding Domain,
RG UNEDITED
Length = 261
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 488 MMVGPTYRTDGFGFAFPLGSPLVPYISRAILKVTE 522
M VG + G+G A P GS L ++ A+LK++E
Sbjct: 208 MKVGGNLDSKGYGIATPKGSSLRTPVNLAVLKLSE 242
>pdb|2XHD|A Chain A, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
pdb|2XHD|B Chain B, Crystal Structure Of N-((2s)-5-(6-Fluoro-3-Pyridinyl)-2,3-
Dihydro-1h-Inden-2-Yl)-2-Propanesulfonamide In Complex
With The Ligand Binding Domain Of The Human Glua2
Receptor
Length = 263
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 488 MMVGPTYRTDGFGFAFPLGSPLVPYISRAILKVTE 522
M VG + G+G A P GS L ++ A+LK++E
Sbjct: 209 MKVGGNLDSKGYGIATPKGSSLRTPVNLAVLKLSE 243
>pdb|3O28|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 488 MMVGPTYRTDGFGFAFPLGSPLVPYISRAILKVTE 522
M VG + G+G A P GS L ++ A+LK++E
Sbjct: 209 MKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSE 243
>pdb|3O29|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O2A|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6G|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6H|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3O6I|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMV|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMW|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|3PMX|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
pdb|4FAT|A Chain A, Ligand-Binding Domain Of Glua2 (Flip) Ionotropic Glutamate
Receptor In Complex With An Allosteric Modulator
Length = 263
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 488 MMVGPTYRTDGFGFAFPLGSPLVPYISRAILKVTE 522
M VG + G+G A P GS L ++ A+LK++E
Sbjct: 209 MKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSE 243
>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
pdb|3LMK|B Chain B, Ligand Binding Domain Of Metabotropoc Glutamate Receptor
Mglur5 Complexed With Glutamate
Length = 492
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 113 GAKLLDTLINTTFEGLSGNFHLV--NGQLEPSAFEIFN 148
G KLL++L+ T F G+SG+ L NG P +EI N
Sbjct: 421 GRKLLESLMKTNFTGVSGDTILFDENGD-SPGRYEIMN 457
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,746,634
Number of Sequences: 62578
Number of extensions: 883034
Number of successful extensions: 2091
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 2040
Number of HSP's gapped (non-prelim): 101
length of query: 681
length of database: 14,973,337
effective HSP length: 105
effective length of query: 576
effective length of database: 8,402,647
effective search space: 4839924672
effective search space used: 4839924672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)