Query 005717
Match_columns 681
No_of_seqs 458 out of 3141
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 05:28:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005717.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005717hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 1.1E-75 3.6E-80 695.4 43.5 565 1-588 204-813 (823)
2 1yae_A Glutamate receptor, ion 100.0 1.5E-28 5.2E-33 257.0 15.0 273 195-556 13-305 (312)
3 1pb7_A N-methyl-D-aspartate re 99.9 7.5E-27 2.6E-31 241.7 14.9 213 220-542 60-292 (292)
4 2rc8_A Glutamate [NMDA] recept 99.9 4.3E-26 1.5E-30 236.2 13.4 236 195-541 5-293 (294)
5 3g3k_A Glutamate receptor, ion 99.9 1E-25 3.5E-30 228.4 15.3 235 195-542 4-259 (259)
6 2a5s_A N-methyl-D-aspartate re 99.9 1.6E-25 5.4E-30 230.8 14.2 208 221-541 55-283 (284)
7 4h5g_A Amino acid ABC superfam 99.9 6.8E-24 2.3E-28 213.2 18.7 223 195-537 12-238 (243)
8 4gvo_A LMO2349 protein; struct 99.9 7.5E-24 2.6E-28 212.9 15.3 224 194-537 8-236 (243)
9 2v3u_A Glutamate receptor delt 99.9 3E-23 1E-27 210.6 16.6 230 195-541 3-264 (265)
10 1mqi_A Glutamate receptor 2; G 99.9 1.8E-22 6E-27 205.0 19.1 227 195-541 4-262 (263)
11 3k4u_A Binding component of AB 99.9 1.8E-22 6.3E-27 202.4 17.2 223 195-537 5-229 (245)
12 3i6v_A Periplasmic His/Glu/Gln 99.9 1.7E-22 5.9E-27 201.3 16.4 218 195-543 5-224 (232)
13 4f3p_A Glutamine-binding perip 99.9 4.8E-22 1.7E-26 200.0 18.8 219 194-537 23-243 (249)
14 3del_B Arginine binding protei 99.9 4.2E-22 1.5E-26 199.1 17.7 220 195-541 11-237 (242)
15 3hv1_A Polar amino acid ABC up 99.9 3.9E-22 1.3E-26 203.0 17.5 221 195-537 21-249 (268)
16 3kzg_A Arginine 3RD transport 99.9 2.9E-22 9.9E-27 199.9 16.2 220 195-537 3-231 (237)
17 4gpa_A Glutamate receptor 4; P 99.9 4.7E-22 1.6E-26 213.7 16.6 170 1-171 209-380 (389)
18 3kbr_A Cyclohexadienyl dehydra 99.9 4.1E-22 1.4E-26 198.8 15.0 220 195-536 15-237 (239)
19 1ii5_A SLR1257 protein; membra 99.9 6.9E-21 2.4E-25 188.7 21.1 221 195-537 4-227 (233)
20 3tql_A Arginine-binding protei 99.9 2.7E-21 9.3E-26 190.7 17.7 218 195-535 2-227 (227)
21 4dz1_A DALS D-alanine transpor 99.9 8.5E-21 2.9E-25 192.3 19.3 222 195-537 29-254 (259)
22 3h7m_A Sensor protein; histidi 99.9 8.5E-21 2.9E-25 188.2 18.1 219 195-537 11-231 (234)
23 4eq9_A ABC transporter substra 99.9 4.2E-21 1.4E-25 192.1 15.4 222 194-538 7-237 (246)
24 3mpk_A Virulence sensor protei 99.9 6.2E-21 2.1E-25 194.3 16.2 219 195-537 32-253 (267)
25 1wdn_A GLNBP, glutamine bindin 99.9 1.4E-20 4.9E-25 185.3 18.4 219 195-537 3-223 (226)
26 1lst_A Lysine, arginine, ornit 99.8 8.1E-21 2.8E-25 189.3 16.3 222 195-537 4-233 (239)
27 2y7i_A STM4351; arginine-bindi 99.8 3E-20 1E-24 183.8 18.0 217 194-536 5-228 (229)
28 2q88_A EHUB, putative ABC tran 99.8 2.1E-20 7.1E-25 188.7 16.7 222 195-535 13-239 (257)
29 3o21_A Glutamate receptor 3; p 99.8 1.5E-20 5E-25 202.6 15.5 166 1-169 210-380 (389)
30 2pyy_A Ionotropic glutamate re 99.8 3.7E-20 1.3E-24 182.7 16.9 220 195-537 3-223 (228)
31 2iee_A ORF2, probable ABC tran 99.8 1.8E-20 6.3E-25 191.2 14.1 217 195-536 21-246 (271)
32 3hsy_A Glutamate receptor 2; l 99.8 3.1E-20 1.1E-24 199.1 16.1 165 1-168 204-373 (376)
33 3qax_A Probable ABC transporte 99.8 1.7E-19 5.7E-24 182.9 17.8 217 195-537 31-254 (268)
34 4i62_A Amino acid ABC transpor 99.8 1.5E-19 5.1E-24 183.4 17.2 222 195-537 39-265 (269)
35 2pvu_A ARTJ; basic amino acid 99.8 3.5E-19 1.2E-23 181.7 17.7 219 195-537 42-263 (272)
36 2vha_A Periplasmic binding tra 99.8 2.2E-19 7.6E-24 184.6 15.9 223 195-537 17-249 (287)
37 3saj_A Glutamate receptor 1; r 99.8 2E-19 6.8E-24 193.4 15.4 166 1-169 207-377 (384)
38 2yln_A Putative ABC transporte 99.8 2.9E-19 9.9E-24 183.7 15.9 217 195-537 57-278 (283)
39 1xt8_A Putative amino-acid tra 99.8 3.1E-19 1.1E-23 184.1 16.0 218 195-537 44-266 (292)
40 2yjp_A Putative ABC transporte 99.8 3.5E-19 1.2E-23 183.8 16.3 218 195-537 55-277 (291)
41 3om0_A Glutamate receptor, ion 99.8 1.9E-18 6.5E-23 186.2 16.8 164 1-170 216-382 (393)
42 3qel_B Glutamate [NMDA] recept 99.7 5.5E-18 1.9E-22 180.6 8.7 141 1-188 219-363 (364)
43 3h6g_A Glutamate receptor, ion 99.7 6.9E-17 2.4E-21 174.1 16.3 160 1-169 216-383 (395)
44 2v25_A Major cell-binding fact 99.7 9.7E-17 3.3E-21 161.4 9.6 214 195-535 38-258 (259)
45 4f11_A Gamma-aminobutyric acid 99.6 7.9E-16 2.7E-20 167.9 15.3 170 1-194 231-425 (433)
46 3qek_A NMDA glutamate receptor 99.6 3.4E-15 1.2E-19 160.2 15.0 142 1-189 240-384 (384)
47 1jdp_A NPR-C, atrial natriuret 99.5 7.7E-13 2.6E-17 144.6 16.9 164 1-192 236-415 (441)
48 1dp4_A Atrial natriuretic pept 99.4 8.2E-13 2.8E-17 143.9 15.7 160 1-189 231-414 (435)
49 3mq4_A Mglur7, metabotropic gl 99.1 1.3E-10 4.4E-15 128.3 11.7 147 6-161 276-467 (481)
50 2e4u_A Metabotropic glutamate 99.1 5.2E-10 1.8E-14 125.8 13.6 162 5-188 270-477 (555)
51 3sm9_A Mglur3, metabotropic gl 99.1 4.2E-10 1.4E-14 124.0 11.4 162 6-189 270-477 (479)
52 3ks9_A Mglur1, metabotropic gl 99.1 6.5E-10 2.2E-14 123.1 12.9 148 6-162 285-475 (496)
53 3td9_A Branched chain amino ac 98.8 9.5E-09 3.2E-13 108.8 10.8 108 25-163 250-363 (366)
54 3n5l_A Binding protein compone 98.8 4.7E-08 1.6E-12 101.2 13.9 213 195-535 4-242 (310)
55 2ozz_A Hypothetical protein YH 98.7 4.4E-08 1.5E-12 95.3 10.7 181 221-535 28-223 (231)
56 3p7i_A PHND, subunit of alkylp 98.7 2.3E-07 7.9E-12 96.3 14.7 124 411-535 113-251 (321)
57 4evq_A Putative ABC transporte 98.6 1.3E-07 4.5E-12 100.2 12.4 109 25-162 251-363 (375)
58 3hut_A Putative branched-chain 98.6 6.5E-08 2.2E-12 101.9 9.4 108 25-162 240-353 (358)
59 1usg_A Leucine-specific bindin 98.6 7.5E-08 2.6E-12 100.8 9.4 103 25-157 239-345 (346)
60 3i45_A Twin-arginine transloca 98.6 2.1E-07 7.3E-12 99.2 12.7 114 26-169 248-366 (387)
61 3ipc_A ABC transporter, substr 98.6 6.3E-08 2.2E-12 101.9 8.2 109 25-163 239-352 (356)
62 3n0x_A Possible substrate bind 98.5 3.4E-07 1.2E-11 97.2 10.2 100 25-154 245-349 (374)
63 3h5l_A Putative branched-chain 98.4 6.3E-07 2.2E-11 96.6 11.6 115 25-161 266-395 (419)
64 4eyg_A Twin-arginine transloca 98.4 9.7E-07 3.3E-11 93.2 11.7 124 5-161 223-358 (368)
65 3lkb_A Probable branched-chain 98.4 3.3E-07 1.1E-11 97.8 6.6 122 25-168 244-380 (392)
66 1pea_A Amidase operon; gene re 98.3 1.5E-06 5.2E-11 92.5 10.9 108 26-160 246-357 (385)
67 3i09_A Periplasmic branched-ch 98.3 1.5E-06 5.2E-11 92.0 9.9 98 25-153 242-342 (375)
68 3eaf_A ABC transporter, substr 98.2 3.3E-06 1.1E-10 90.1 8.9 119 25-167 245-376 (391)
69 4gnr_A ABC transporter substra 98.2 5.4E-06 1.8E-10 87.0 10.4 101 24-157 242-348 (353)
70 4f06_A Extracellular ligand-bi 98.2 7.5E-06 2.6E-10 86.7 11.3 102 23-151 242-347 (371)
71 3n0w_A ABC branched chain amin 98.1 5.7E-06 1.9E-10 87.8 9.0 105 25-161 245-353 (379)
72 3snr_A Extracellular ligand-bi 98.1 6.8E-06 2.3E-10 86.2 9.2 111 25-157 236-361 (362)
73 3sg0_A Extracellular ligand-bi 97.9 1.8E-05 6.2E-10 83.7 7.9 111 25-157 260-385 (386)
74 2x26_A Periplasmic aliphatic s 97.8 0.00015 5E-09 74.3 13.6 120 411-535 96-231 (308)
75 3lop_A Substrate binding perip 97.8 6.3E-05 2.2E-09 79.1 11.0 104 25-154 243-353 (364)
76 3uif_A Sulfonate ABC transport 97.7 0.00012 4.1E-09 76.6 11.3 108 411-520 110-228 (348)
77 3un6_A Hypothetical protein sa 97.7 7.2E-05 2.5E-09 78.1 9.3 121 411-536 144-283 (341)
78 3ksx_A Nitrate transport prote 97.6 0.00046 1.6E-08 71.2 12.7 94 411-506 122-219 (324)
79 3qsl_A Putative exported prote 97.5 0.0004 1.4E-08 72.1 11.6 136 235-483 59-205 (346)
80 3ix1_A N-formyl-4-amino-5-amin 97.4 0.0003 1E-08 71.8 9.1 76 222-301 16-95 (302)
81 2qpq_A Protein BUG27; alpha/be 97.4 0.0032 1.1E-07 64.2 15.6 121 411-535 113-267 (301)
82 2dvz_A BUGE, putative exported 97.3 0.0041 1.4E-07 63.8 16.1 123 411-535 126-280 (314)
83 2f5x_A BUGD; periplasmic bindi 97.2 0.0076 2.6E-07 61.7 16.5 121 411-535 122-276 (312)
84 2k1e_A Water soluble analogue 96.8 0.0011 3.8E-08 55.8 5.1 76 327-406 19-96 (103)
85 2ih3_C Voltage-gated potassium 96.8 0.0033 1.1E-07 54.7 8.2 74 328-405 41-116 (122)
86 4ddd_A Immunogenic protein; ss 96.8 0.0029 9.8E-08 65.5 9.1 59 411-472 137-202 (327)
87 2a9h_A Voltage-gated potassium 96.5 0.0085 2.9E-07 54.4 8.5 77 328-408 64-142 (155)
88 3eff_K Voltage-gated potassium 96.4 0.01 3.5E-07 52.9 8.6 73 329-405 21-95 (139)
89 2x7q_A Ca3427, possible thiami 96.1 0.039 1.3E-06 56.5 12.5 107 411-523 111-236 (321)
90 4h33_A LMO2059 protein; bilaye 96.0 0.024 8.1E-07 50.3 8.5 56 351-406 42-99 (137)
91 2zzv_A ABC transporter, solute 95.8 0.1 3.5E-06 54.5 14.1 59 410-476 164-222 (361)
92 3ckm_A YRAM (HI1655), LPOA; pe 95.7 0.0077 2.6E-07 62.0 5.1 94 26-161 226-323 (327)
93 4ab5_A Transcriptional regulat 95.3 0.13 4.4E-06 48.5 11.9 196 195-523 8-208 (222)
94 2g29_A Nitrate transport prote 95.2 0.077 2.6E-06 56.6 10.8 104 416-522 151-272 (417)
95 3ldc_A Calcium-gated potassium 95.1 0.084 2.9E-06 42.1 8.0 52 352-403 28-81 (82)
96 1zbm_A Hypothetical protein AF 94.9 0.046 1.6E-06 54.6 7.6 99 416-523 99-210 (280)
97 3ouf_A Potassium channel prote 94.8 0.069 2.4E-06 44.1 7.1 58 351-408 31-90 (97)
98 2q67_A Potassium channel prote 94.8 0.085 2.9E-06 45.0 7.7 55 352-406 49-105 (114)
99 1us5_A Putative GLUR0 ligand b 94.7 0.12 4E-06 52.5 10.0 59 411-472 122-187 (314)
100 2hzl_A Trap-T family sorbitol/ 94.5 0.24 8.2E-06 51.7 12.1 45 229-273 53-98 (365)
101 2h4a_A YRAM (HI1655); perplasm 94.2 0.073 2.5E-06 54.7 7.1 91 25-157 223-317 (325)
102 2pfy_A Putative exported prote 94.1 0.38 1.3E-05 48.6 12.3 63 228-290 21-85 (301)
103 3vou_A ION transport 2 domain 94.1 0.14 4.8E-06 45.9 8.0 55 351-405 51-107 (148)
104 2pfz_A Putative exported prote 93.9 0.44 1.5E-05 48.1 12.3 63 228-290 20-84 (301)
105 1p7b_A Integral membrane chann 93.8 0.12 4.2E-06 52.8 7.8 61 348-408 92-154 (333)
106 3ho7_A OXYR; beta-alpha-barrel 93.8 0.26 8.9E-06 46.7 9.8 83 195-302 11-93 (232)
107 1xl4_A Inward rectifier potass 93.7 0.19 6.7E-06 50.7 9.0 60 348-407 78-139 (301)
108 1orq_C Potassium channel; volt 93.7 0.17 5.8E-06 48.7 8.4 74 328-405 145-220 (223)
109 3jv9_A OXYR, transcriptional r 93.7 0.53 1.8E-05 43.9 11.8 70 225-302 17-86 (219)
110 3oxn_A Putative transcriptiona 93.6 0.84 2.9E-05 43.5 13.4 193 195-522 19-217 (241)
111 3pjs_K KCSA, voltage-gated pot 93.3 0.006 2.1E-07 56.2 -2.7 71 331-405 50-122 (166)
112 4gx0_A TRKA domain protein; me 93.0 0.24 8.3E-06 55.0 9.3 124 351-477 50-183 (565)
113 2esn_A Probable transcriptiona 92.2 2 7E-05 42.7 14.4 86 195-302 101-186 (310)
114 1atg_A MODA, periplasmic molyb 92.2 0.79 2.7E-05 43.3 10.7 71 227-302 14-90 (231)
115 2i49_A Bicarbonate transporter 91.9 0.69 2.4E-05 49.3 10.8 106 415-522 153-280 (429)
116 2y7p_A LYSR-type regulatory pr 91.8 3 0.0001 39.1 14.3 70 225-302 21-90 (218)
117 3fxq_A LYSR type regulator of 91.8 1.2 4.1E-05 44.4 12.1 85 195-302 92-176 (305)
118 2hxr_A HTH-type transcriptiona 91.5 3 0.0001 39.4 14.0 83 195-302 30-112 (238)
119 2qks_A KIR3.1-prokaryotic KIR 91.5 0.59 2E-05 47.6 9.1 57 351-407 77-135 (321)
120 4esw_A Pyrimidine biosynthesis 91.3 0.58 2E-05 48.1 9.1 65 411-478 102-169 (342)
121 1lnq_A MTHK channels, potassiu 91.1 0.18 6.2E-06 51.9 5.0 125 352-481 45-172 (336)
122 3beh_A MLL3241 protein; transm 90.8 0.29 9.9E-06 50.8 6.3 75 327-405 140-216 (355)
123 3r26_A Molybdate-binding perip 90.5 4.4 0.00015 38.9 14.2 113 412-534 107-232 (237)
124 3fzv_A Probable transcriptiona 89.1 2.2 7.6E-05 42.2 11.2 83 195-302 95-178 (306)
125 1sw5_A Osmoprotection protein 88.9 2.2 7.6E-05 42.2 10.8 105 411-521 124-238 (275)
126 2fyi_A HTH-type transcriptiona 88.8 6 0.00021 37.0 13.6 196 195-523 14-215 (228)
127 1i6a_A OXYR, hydrogen peroxide 87.8 1.4 5E-05 41.2 8.3 70 225-302 18-87 (219)
128 3gzg_A Molybdate-binding perip 87.7 5.6 0.00019 38.8 12.7 70 228-302 38-113 (253)
129 2r9r_B Paddle chimera voltage 87.2 1.2 4.2E-05 48.5 8.2 72 330-405 357-430 (514)
130 2ql3_A Probable transcriptiona 86.5 5.3 0.00018 36.6 11.4 83 195-302 5-87 (209)
131 3ukm_A Potassium channel subfa 86.0 1 3.5E-05 44.7 6.1 67 351-417 200-275 (280)
132 2xwv_A Sialic acid-binding per 85.8 8.6 0.0003 38.7 13.3 60 410-476 133-192 (312)
133 1uth_A LYSR-type regulatory pr 85.6 6 0.00021 39.5 12.1 70 225-302 118-187 (315)
134 1xs5_A 29 kDa protein, membran 85.5 10 0.00036 36.5 13.1 36 231-270 21-56 (241)
135 2hpg_A ABC transporter, peripl 85.4 5 0.00017 40.8 11.3 101 410-519 148-251 (327)
136 1al3_A Cys regulon transcripti 84.8 13 0.00046 37.0 14.3 205 195-535 93-304 (324)
137 1ixc_A CBNR, LYSR-type regulat 80.9 14 0.00049 35.8 12.5 83 195-302 91-173 (294)
138 2vpn_A Periplasmic substrate b 80.8 8 0.00027 39.0 10.6 59 410-475 130-188 (316)
139 3kos_A HTH-type transcriptiona 79.3 12 0.00041 34.4 10.8 107 413-523 96-206 (219)
140 1twy_A ABC transporter, peripl 78.9 30 0.001 33.2 14.1 71 227-302 42-113 (290)
141 2h9b_A HTH-type transcriptiona 78.5 24 0.00081 34.8 13.3 70 225-302 103-172 (312)
142 3hhf_B Transcriptional regulat 76.1 6.2 0.00021 36.1 7.6 79 195-301 7-85 (213)
143 1nh8_A ATP phosphoribosyltrans 75.8 8.2 0.00028 38.4 8.4 101 412-521 121-224 (304)
144 2h98_A HTH-type transcriptiona 75.2 36 0.0012 33.6 13.7 69 225-301 103-171 (313)
145 3cvg_A Putative metal binding 74.7 32 0.0011 33.9 12.9 75 225-302 33-115 (294)
146 4edp_A ABC transporter, substr 73.7 56 0.0019 32.4 14.8 82 450-533 215-298 (351)
147 1r9l_A Glycine betaine-binding 73.4 8.7 0.0003 38.6 8.3 41 228-272 24-64 (309)
148 3um7_A Potassium channel subfa 72.1 8 0.00027 38.8 7.4 54 352-405 224-285 (309)
149 2de3_A Dibenzothiophene desulf 71.4 4.4 0.00015 41.9 5.7 121 409-535 108-298 (365)
150 3tmg_A Glycine betaine, L-prol 71.3 15 0.00053 36.2 9.4 41 227-272 31-71 (280)
151 2rin_A Putative glycine betain 71.1 12 0.00041 37.3 8.6 39 229-272 24-62 (298)
152 3um7_A Potassium channel subfa 70.9 4.8 0.00017 40.4 5.5 54 351-404 114-169 (309)
153 3k6v_A Solute-binding protein 68.9 84 0.0029 32.0 14.6 88 446-535 221-330 (354)
154 3l6g_A Betaine ABC transporter 68.8 17 0.00057 35.4 8.9 42 226-272 16-57 (256)
155 2xxp_A CPS2A; replication, pep 68.1 3.9 0.00013 42.8 4.3 68 409-481 25-98 (398)
156 3sya_A G protein-activated inw 66.8 14 0.00048 37.5 8.0 60 350-409 89-152 (340)
157 2czl_A Hypothetical protein TT 63.1 10 0.00034 36.9 6.1 59 415-477 91-150 (272)
158 1p99_A Hypothetical protein PG 61.5 53 0.0018 32.5 11.2 36 231-270 56-91 (295)
159 3muq_A Uncharacterized conserv 60.7 98 0.0033 29.5 12.4 74 225-303 19-95 (237)
160 3hn0_A Nitrate transport prote 59.9 24 0.00081 34.7 8.2 61 422-483 96-161 (283)
161 3onm_A Transcriptional regulat 59.8 1.1E+02 0.0037 28.2 15.8 81 195-302 27-107 (238)
162 3cij_A UPF0100 protein AF_0094 58.3 1.2E+02 0.0039 29.6 13.2 69 229-302 21-95 (295)
163 4ef1_A Pheromone COB1/lipoprot 57.7 52 0.0018 31.6 9.8 38 230-271 21-58 (246)
164 3ukm_A Potassium channel subfa 56.9 12 0.0004 37.0 5.1 56 350-405 91-148 (280)
165 3rvy_A ION transport protein; 54.8 19 0.00066 35.4 6.6 58 350-407 178-243 (285)
166 3spc_A Inward-rectifier K+ cha 52.3 32 0.0011 35.0 7.6 60 350-409 92-155 (343)
167 1h3d_A ATP-phosphoribosyltrans 50.9 59 0.002 32.3 9.1 100 412-521 116-218 (299)
168 2ks1_B Epidermal growth factor 50.4 41 0.0014 22.9 5.4 15 573-587 26-40 (44)
169 3cfx_A UPF0100 protein MA_0280 50.0 1.9E+02 0.0064 28.1 14.4 69 229-302 21-95 (296)
170 2hxw_A Major antigenic peptide 49.5 72 0.0025 29.7 9.6 68 228-301 16-90 (237)
171 4euo_A ABC transporter, substr 46.5 2.2E+02 0.0074 27.8 15.0 83 448-533 176-258 (320)
172 3isp_A HTH-type transcriptiona 44.0 47 0.0016 32.3 7.5 54 241-301 119-172 (303)
173 2vd3_A ATP phosphoribosyltrans 41.4 33 0.0011 33.9 5.6 101 411-521 105-208 (289)
174 2klu_A T-cell surface glycopro 41.0 90 0.0031 23.1 6.3 14 566-579 13-26 (70)
175 3lr1_A Tungstate ABC transport 40.3 14 0.00047 35.6 2.6 75 224-303 18-95 (236)
176 2l2t_A Receptor tyrosine-prote 37.5 52 0.0018 22.3 4.3 14 574-587 25-39 (44)
177 3fd3_A Chromosome replication 35.6 2.1E+02 0.0073 25.0 10.2 67 225-300 15-81 (208)
178 2nr1_A NR1 M2, M2; receptor, s 35.3 19 0.00064 21.4 1.6 17 351-367 7-23 (27)
179 1gtk_A Porphobilinogen deamina 35.2 3.4E+02 0.012 26.8 12.4 61 413-477 114-175 (313)
180 3mz1_A Putative transcriptiona 33.4 91 0.0031 29.7 7.6 79 195-301 88-166 (300)
181 2jwa_A Receptor tyrosine-prote 32.3 1E+02 0.0035 20.9 5.1 22 566-587 18-39 (44)
182 3szp_A Transcriptional regulat 30.9 24 0.00083 33.9 2.8 79 195-301 91-169 (291)
183 3mwb_A Prephenate dehydratase; 28.7 1.3E+02 0.0046 29.9 7.7 84 423-509 7-102 (313)
184 2qsx_A Putative transcriptiona 27.1 3.4E+02 0.012 24.3 10.9 78 195-300 19-96 (218)
185 4ecf_A ABC-type phosphate tran 26.3 83 0.0028 30.3 5.7 72 226-302 17-91 (264)
186 2k1k_A Ephrin type-A receptor 25.0 71 0.0024 20.9 3.2 15 570-584 23-37 (38)
187 2qmx_A Prephenate dehydratase; 24.4 2.1E+02 0.0071 28.0 8.1 79 423-509 7-96 (283)
188 3hhg_A Transcriptional regulat 23.7 73 0.0025 30.7 4.9 79 195-301 93-171 (306)
189 4exl_A PBP 1, phosphate-bindin 23.4 1E+02 0.0035 29.7 5.7 71 227-301 18-90 (265)
190 3fxb_A Trap dicarboxylate tran 23.4 1.1E+02 0.0037 30.6 6.1 101 410-519 144-247 (326)
191 2qmw_A PDT, prephenate dehydra 22.1 2.2E+02 0.0075 27.6 7.7 82 423-509 4-98 (267)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=1.1e-75 Score=695.40 Aligned_cols=565 Identities=20% Similarity=0.303 Sum_probs=458.8
Q ss_pred CCCCCeEEEecCCccccCCccccccCccceEEEEEecCCChhHHHHHHHHHhh--cCCCCCCCCCCchhHHHHHHHHHHH
Q 005717 1 MMSEGYAWIATQGLSTLLDPVKDMESMQGVLGLRPYIPSSKKLEHFKLRWIKS--ADKPDGSTGGSNLFGLWAYDTVWAI 78 (681)
Q Consensus 1 mm~~~y~WI~t~~~~~~~~~~~~~~~~~Gvlg~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~~~~~~~~~~aYDav~~l 78 (681)
|++++|+||++++.....+.....+...|++|++++.+..+.+++|.++|+++ .++++.....++.+++++||||+++
T Consensus 204 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~l 283 (823)
T 3kg2_A 204 KHVKGYHYIIANLGFTDGDLLKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVM 283 (823)
T ss_dssp TTBTTCEEEECSSBSSSSCCSSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEecccccccchHHhhcCCCCceEeeeecCCchHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHH
Confidence 57789999999964444443345567778999999999999999999999876 4455545556788999999999999
Q ss_pred HHHHHHHcccCCcccccCCCCCCCccccc--CCCcchHHHHHHHhccceecceeeEEE-eCCcccCccEEEEEeeeCCee
Q 005717 79 AMAVERAGIENSSFLKSNTSKSRVDIAAL--GTFEMGAKLLDTLINTTFEGLSGNFHL-VNGQLEPSAFEIFNVIGTSER 155 (681)
Q Consensus 79 A~Al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~G~~l~~~l~~~~f~GltG~i~F-~~G~~~~~~~~I~n~~~~~~~ 155 (681)
|+|++++...+..... .....+|... ..|.+|..|+++|++++|+|+||+|+| ++|++.+..|+|+|+++++++
T Consensus 284 a~Al~~~~~~~~~~~~---~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~ 360 (823)
T 3kg2_A 284 TEAFRNLRKQRIEISR---RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPR 360 (823)
T ss_dssp HHHHHHHHTTTCCCCC---SSCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEE
T ss_pred HHHHHHHHhhcccccc---CCCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCCe
Confidence 9999999865433322 2234567654 568899999999999999999999999 889999999999999999999
Q ss_pred EeeeeeCCCCccccccCCCCccCCCCCCccCCCCCcCCCceEEEEeeccCCccceEEEeecC-CCCeeEEeehHHHHHHH
Q 005717 156 VIGYWTKEKELLSELNDNNGRATNNLKNPIWPGNTIDQPRKLKIGVPVREGFTEFIKVVENK-NKTTQVSGFCYDMFHAV 234 (681)
Q Consensus 156 ~vG~W~~~~gl~~~~~~~~~~~~~~l~~i~Wpg~~~~~p~~lrV~v~~~~p~~~~~~~~~~~-~~~~~~~G~~idll~~l 234 (681)
+||+|++..|+....+ ...+ ...++|+|++...+||..+.. ..++ ++++++.|||+||++++
T Consensus 361 ~vg~w~~~~g~~~~~~-----~~~~-----------~~~~~l~v~~~~~~P~~~~~~-~~~~~~~~~~~~G~~~dl~~~~ 423 (823)
T 3kg2_A 361 KIGYWSEVDKMVLTED-----DTSG-----------LEQKTVVVTTILESPYVMMKA-NHAALAGNERYEGYCVDLAAEI 423 (823)
T ss_dssp EEEEEETTTEEEECCC-----CCSS-----------CCCCCEEEEECCCTTTSEECT-TGGGCCGGGGEESHHHHHHHHH
T ss_pred eEEEEcCCCCceeccC-----cccc-----------cCCCEEEEEEecCCCcEEEec-CccccCCCCceEEEHHHHHHHH
Confidence 9999999988875432 0011 123789999988888754321 1122 56789999999999999
Q ss_pred HHHcCCCcCeEEEeCCC--------CCHHHHHHHHHhCccceEEEeEEEeeccccccccccceeecceEEEEEeccCCCc
Q 005717 235 LQVLEFPLPYEFVPFHD--------GSFDELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSMLVLVKDDERK 306 (681)
Q Consensus 235 ~~~l~f~~~~~~v~~~~--------g~~~gli~~l~~g~~Dia~~~~~it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~ 306 (681)
++++||+++++.++++. |+|++++++|.+|++|++++++++|++|.+.+|||.||+.+++++++|++.....
T Consensus 424 a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~~~v~~~~~~~~ 503 (823)
T 3kg2_A 424 AKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKP 503 (823)
T ss_dssp HHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEEEEEECCCCCCC
T ss_pred HHHcCCcEEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCCEEEEEECCCcccc
Confidence 99999886666655322 5699999999999999999999999999999999999999999999999887777
Q ss_pred CceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCC--------------CCchhhHHHHHHHHHhccCcc-c
Q 005717 307 NFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPP--------------QHQIGTIFWFSFSTLVFAHRE-R 371 (681)
Q Consensus 307 ~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~-~ 371 (681)
+++.|++||++.+|++++++++++++++|+++|..+.+++.+. ..++.+++|++++++++++.. .
T Consensus 504 ~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 583 (823)
T 3kg2_A 504 GVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADIS 583 (823)
T ss_dssp CGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHHTTTTSCC------
T ss_pred cchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccccccccHHHHHHHHHHHHHhcCCCcC
Confidence 8999999999999999999999999999999998766554322 124789999999999877754 4
Q ss_pred ccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCC-eEEEecChhHHHHHhhhcCCcc-c---
Q 005717 372 VVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGY-FVGYQTNSFVKDLLTKKLNFNE-T--- 446 (681)
Q Consensus 372 ~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~-~vg~~~~s~~~~~l~~~~~~~~-~--- 446 (681)
|++.++|+++++|||++||++++|||+|+|+||++++.++|++++||.+++. .+|+..++....++ ++...+. .
T Consensus 584 p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~ 662 (823)
T 3kg2_A 584 PRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFF-RRSKIAVFDKMW 662 (823)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHH-HHCCCHHHHHHH
T ss_pred CcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHH-HhccchHHHHHH
Confidence 8999999999999999999999999999999999999999999999998654 78888777777777 3322211 0
Q ss_pred -------cccccCChhHHHHHHc-cCcceEEecchhhHHHHHhhc-CCceEEECcccccCCcEEEecCCCCChHHHHHHH
Q 005717 447 -------RLKNYTTSEDYHDALS-NGEVAAIFDEIPYIKIFLASY-CSRYMMVGPTYRTDGFGFAFPLGSPLVPYISRAI 517 (681)
Q Consensus 447 -------~~~~~~~~~~~~~~l~-~g~~~a~i~e~~~~~~~~~~~-c~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~I 517 (681)
....+++.+++++++. +++.+|++.+.+.++|+.+++ | +++++++.+...++++++||||||++.||++|
T Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~y~~~~~~c-~l~~v~~~~~~~~~~~~~~k~spl~~~~~~~i 741 (823)
T 3kg2_A 663 TYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPC-DTMKVGGNLDSKGYGIATPKGSSLGTPVNLAV 741 (823)
T ss_dssp HHHHHCSSCCCBSSHHHHHHHHHTTTTSEEEEEEHHHHHHHHTSTTC-CEEEESCCSSCEEECCEEETTCSSHHHHHHHH
T ss_pred HHHHhcCCccccCCHHHHHHHHhccCCceEEEechHHHHHHHhcCCC-ceEEccccccccceeEeecCCChHHHHHHHHH
Confidence 1123468899999995 566789999999999988877 9 89999999999999999999999999999999
Q ss_pred HhhccCccHHHHHHHHHcCC-CCCCCCCCC-cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 005717 518 LKVTEDKEKMENIEKALGNQ-ATCEGQGPT-TLSSDSLSVYSFGGLFIIAGIASMSSLLIYVFNFVCFHRPEL 588 (681)
Q Consensus 518 l~l~e~~G~l~~i~~kw~~~-~~c~~~~~~-~~~~~~L~l~~~~g~F~il~~g~~lallvfi~E~l~~~~~~~ 588 (681)
++++|+ |++++|.++|+.. ..|...... ..+..+|+++++.|+|+++++|+++|+++|++|++|++++.+
T Consensus 742 l~l~e~-G~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E~~~~~~~~~ 813 (823)
T 3kg2_A 742 LKLSEQ-GLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEA 813 (823)
T ss_dssp HHHHHT-THHHHHHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHhC-CcHHHHHHhhCcCCCCCCCCCccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHcchhh
Confidence 999999 9999999999976 788875432 135679999999999999999999999999999999887764
No 2
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.95 E-value=1.5e-28 Score=257.00 Aligned_cols=273 Identities=19% Similarity=0.335 Sum_probs=190.3
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCC--------CCCHHHHHHHHHhCcc
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFH--------DGSFDELLHKIEKQEF 266 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~--------~g~~~gli~~l~~g~~ 266 (681)
++||||+...+||..+.....+.++++++.||++||++++++++|+++++..++.+ ..+|++++.+|.+|++
T Consensus 13 ~~l~V~~~~~~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~g~~ 92 (312)
T 1yae_A 13 RSLIVTTILEEPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKA 92 (312)
T ss_dssp CEEEEEECCBTTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTCCBCSHHHHHHTTSC
T ss_pred ceEEEEEeccCCeeEEeccccccCCCceEEEEEHHHHHHHHHHcCCeEEEEecCCCccceeccCCCcchHHHHHHhCCCc
Confidence 78999998876654221000000156789999999999999999976444433211 2589999999999999
Q ss_pred ceEEEeEEEeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCC
Q 005717 267 DTAVGDTTIVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFR 346 (681)
Q Consensus 267 Dia~~~~~it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~ 346 (681)
|++++++++|++|.+.++||.||+..+.+++++++.....++|.|+.||+. .
T Consensus 93 D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~-----------------------~----- 144 (312)
T 1yae_A 93 DLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSL-----------------------V----- 144 (312)
T ss_dssp SEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC----------------------------------------------
T ss_pred CEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeeccccc-----------------------C-----
Confidence 999988999999999999999999999999999886555689999999980 0
Q ss_pred CCCCCchhhHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhC-CCeE
Q 005717 347 GPPQHQIGTIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKN-GYFV 425 (681)
Q Consensus 347 ~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~-~~~v 425 (681)
|+ |++++...|++++||... +.+|
T Consensus 145 -------------------------p~------------------------------tv~~~~~~i~~~~dL~g~~~~~v 169 (312)
T 1yae_A 145 -------------------------PR------------------------------GSERMESPIDSADDLAKQTKIEY 169 (312)
T ss_dssp -----------------------------------------------------------------CCSHHHHHTCSSSEE
T ss_pred -------------------------Cc------------------------------ccccccCCCCCHHHHhhccCceE
Confidence 10 566777789999999943 2279
Q ss_pred EEecChhHHHHHhhhcCCc-----------cccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcCCceEEECccc
Q 005717 426 GYQTNSFVKDLLTKKLNFN-----------ETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSRYMMVGPTY 494 (681)
Q Consensus 426 g~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~l~~v~~~~ 494 (681)
|+..++....++ .+..++ ..++..+.+.++++++|.+|+ ||++.+...+.|++++.| ++.+++..+
T Consensus 170 g~v~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~-Da~i~~~~~~~~~~~~~~-~l~~~~~~~ 246 (312)
T 1yae_A 170 GAVEDGATMTFF-KKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQRNC-NLTQIGGLI 246 (312)
T ss_dssp ECBTTSHHHHHH-HHCCBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHHSS-EEEEEEHHHHHHHHTTCT-TEEEESSCS
T ss_pred EEEeCChHHHHH-HhccCchHHHHHHHHHhcCCCcccCCHHHHHHHHHcCC-cEEEeccHHHHHHHhcCC-CEEEecccc
Confidence 977665556666 332221 124567899999999999999 999999999999998888 899998888
Q ss_pred ccCCcEEEecCCCCChHHHHHHHHhhccCccHHHHHHHHHcCCCCCCCCCCCcccccccccc
Q 005717 495 RTDGFGFAFPLGSPLVPYISRAILKVTEDKEKMENIEKALGNQATCEGQGPTTLSSDSLSVY 556 (681)
Q Consensus 495 ~~~~~~~~~~k~spl~~~in~~Il~l~e~~G~l~~i~~kw~~~~~c~~~~~~~~~~~~L~l~ 556 (681)
...+++++++|++||++.||++|.+|.++ |.+++|.+||+....|...... ++..++++
T Consensus 247 ~~~~~~~a~~k~~~l~~~in~~l~~l~~~-G~~~~i~~kw~~~~~c~~~~~~--~~~~~~~~ 305 (312)
T 1yae_A 247 DSKGYGVGTPMGSPYRDKITIAILQLQEE-GKLHMMKEKWWRGNGCPEEESK--EASALGVQ 305 (312)
T ss_dssp SCEEEEEEEETTCSSHHHHHHHHHHHHHH-THHHHHHHHHHCCSCC----------------
T ss_pred cccceEEEEeCCCCcHHHHHHHHHHHHHc-CCHHHHHhhhcCCCCCCCCCCc--cchhhhhh
Confidence 88899999999999999999999999999 9999999999988899876544 55555554
No 3
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.94 E-value=7.5e-27 Score=241.74 Aligned_cols=213 Identities=19% Similarity=0.372 Sum_probs=179.4
Q ss_pred CeeEEeehHHHHHHHHHHcCCCcCeEEEeCCC------------CCHHHHHHHHHhCccceEEEeEEEeecccccccccc
Q 005717 220 TTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHD------------GSFDELLHKIEKQEFDTAVGDTTIVANRSTFVDFTL 287 (681)
Q Consensus 220 ~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~------------g~~~gli~~l~~g~~Dia~~~~~it~~R~~~vdFT~ 287 (681)
++++.||++||++++++++|+++++..++++. ++|++++.+|.+|++|++++++++|++|.+.++||.
T Consensus 60 ~g~~~G~~vDll~~ia~~lg~~~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~ 139 (292)
T 1pb7_A 60 PQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSK 139 (292)
T ss_dssp EEEEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHHHHHHTSCSEECSSCBCCHHHHTTEEECS
T ss_pred ccCcceeHHHHHHHHHHHcCceEEEEEecCCcccccccccccccCcHHHHHHHHHcCCcCEEEeeeEecHHHhcceEech
Confidence 45789999999999999999775554443221 279999999999999999999999999999999999
Q ss_pred ceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCchhhHHHHHHHHHhcc
Q 005717 288 PYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQIGTIFWFSFSTLVFA 367 (681)
Q Consensus 288 P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 367 (681)
||+..+.+++++++.
T Consensus 140 Py~~~~~~i~~~~~~----------------------------------------------------------------- 154 (292)
T 1pb7_A 140 PFKYQGLTILVKKGT----------------------------------------------------------------- 154 (292)
T ss_dssp CSEEEEEEEEEETTC-----------------------------------------------------------------
T ss_pred hhHhcCeEEEEECCc-----------------------------------------------------------------
Confidence 999999999998653
Q ss_pred CcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCC----CeEEEecChhHHHHHhhhcCC
Q 005717 368 HRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNG----YFVGYQTNSFVKDLLTKKLNF 443 (681)
Q Consensus 368 ~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~----~~vg~~~~s~~~~~l~~~~~~ 443 (681)
++++++||...+ ..+|+..++....++.+...+
T Consensus 155 -------------------------------------------~i~~~~dl~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (292)
T 1pb7_A 155 -------------------------------------------RITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVEL 191 (292)
T ss_dssp -------------------------------------------CCCSTTCHHHHSCBTTBCEECBTTSHHHHHHHTCGGG
T ss_pred -------------------------------------------CCCCCcCccccCcccceEEEEEcCchHHHHhhhcccH
Confidence 356667776433 235888888877777332111
Q ss_pred ----ccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcCCceEEECcccccCCcEEEecCCCCChHHHHHHHHh
Q 005717 444 ----NETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSRYMMVGPTYRTDGFGFAFPLGSPLVPYISRAILK 519 (681)
Q Consensus 444 ----~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~Il~ 519 (681)
+..++..+.+.++++++|.+|++||++.+...+.|+++++| ++.+++..+...+++++++|++||++.||++|.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~i~d~~~~~~~~~~~~-~l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~ 270 (292)
T 1pb7_A 192 STMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKC-DLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILK 270 (292)
T ss_dssp HHHHHHHTTTCBSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCT-TEEECSSCSEEEEECCEEETTCSSHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHcCCceEEEEcHHHHHHHHhcCC-CEEEcCccccCCceEEEEeCCCHHHHHHHHHHHH
Confidence 22356778999999999999999999999999999999999 8999998888889999999999999999999999
Q ss_pred hccCccHHHHHHHHHcCCCCCCC
Q 005717 520 VTEDKEKMENIEKALGNQATCEG 542 (681)
Q Consensus 520 l~e~~G~l~~i~~kw~~~~~c~~ 542 (681)
+.++ |.+++|.+||+....|..
T Consensus 271 l~~~-G~~~~l~~kw~~~~~c~~ 292 (292)
T 1pb7_A 271 SHEN-GFMEDLDKTWVRYQECDS 292 (292)
T ss_dssp HHHS-SHHHHHHHHHTSSSCCCC
T ss_pred HHhC-CCHHHHHHhhCCCCCCCC
Confidence 9999 999999999998888863
No 4
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.93 E-value=4.3e-26 Score=236.25 Aligned_cols=236 Identities=20% Similarity=0.352 Sum_probs=190.9
Q ss_pred ceEEEEeeccCCccceEEEeec----------------------------------C-CCCeeEEeehHHHHHHHHHHcC
Q 005717 195 RKLKIGVPVREGFTEFIKVVEN----------------------------------K-NKTTQVSGFCYDMFHAVLQVLE 239 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~----------------------------------~-~~~~~~~G~~idll~~l~~~l~ 239 (681)
++|||++.+.+||........+ | .-.+++.||++||++++++++|
T Consensus 5 ~~l~v~t~~~~P~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~G~~vdll~~ia~~lg 84 (294)
T 2rc8_A 5 LHLRVVTLIEHPFVFTREVDDEGLCPAGQLCLDPMTNDSSMLDRLFSSLHSSNDTVPIKFKKCCYGYCIDLLEQLAEDMN 84 (294)
T ss_dssp EEEEEEECCBTTTBEEECCCTTSCCTTSEEEECCCCCCHHHHHHHHHHHHSSSCCCCGGGEEEEESHHHHHHHHHHHHHT
T ss_pred CEEEEEEEeeCCcEEEecCCCCCcCccCcccccccccccccchhhhhhcccCCCCCCccccCCceEEhHHHHHHHHHHcC
Confidence 6899999999998755422110 0 0012489999999999999999
Q ss_pred CCcCeEEEeCC------CCCHHHHHHHHHhCccceEEEeEEEeeccccccccccceeecceEEEEEeccCCCcCceeeec
Q 005717 240 FPLPYEFVPFH------DGSFDELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLK 313 (681)
Q Consensus 240 f~~~~~~v~~~------~g~~~gli~~l~~g~~Dia~~~~~it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~ 313 (681)
+++++..++++ .++|++++.+|.+|++|+++++++++++|.+.++||.||+..+.+++++++..
T Consensus 85 ~~~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~~~i~~~~~~~---------- 154 (294)
T 2rc8_A 85 FDFDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRGT---------- 154 (294)
T ss_dssp EEEEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEEEEEEEETTSC----------
T ss_pred CcEEEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcceEEEEECCCC----------
Confidence 76544433321 15899999999999999999899999999999999999999999999987642
Q ss_pred cCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCchhhHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHh
Q 005717 314 PLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQIGTIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQ 393 (681)
Q Consensus 314 PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s 393 (681)
T Consensus 155 -------------------------------------------------------------------------------- 154 (294)
T 2rc8_A 155 -------------------------------------------------------------------------------- 154 (294)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhhhhhheeeecccCCCCCCHHHHHh----CCCeEEEecChhHHHHHhhhcCCcc----ccccccCChhHHHHHHcc--
Q 005717 394 SYTASLTSMLTVQRLQPSFTDVKDIQK----NGYFVGYQTNSFVKDLLTKKLNFNE----TRLKNYTTSEDYHDALSN-- 463 (681)
Q Consensus 394 ~YtA~L~s~LT~~~~~~~i~s~~dL~~----~~~~vg~~~~s~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~l~~-- 463 (681)
.+++++||.. .+.++|+..|+....++.+. ++. .+...+.+.++++++|.+
T Consensus 155 -----------------~i~~~~dL~~~~~~~g~~vg~~~gs~~~~~l~~~--~~~~~~~i~~~~~~~~~~~~~~l~~~~ 215 (294)
T 2rc8_A 155 -----------------ELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQS--FPEMHEYMRRYNVPATPDGVQYLKNDP 215 (294)
T ss_dssp -----------------CCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHHH--CHHHHHHHGGGCBSSHHHHHHHHHSSS
T ss_pred -----------------CcCChhhhhhcCcccCeEEEEEcCChHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHhcc
Confidence 3677788873 36789999999988888332 222 122357899999999998
Q ss_pred CcceEEecchhhHHHHHhhc--CCceEEECcccccCCcEEEecCCCCChHHHHHHHHhhccCccHHHHHHHHHcCCCCCC
Q 005717 464 GEVAAIFDEIPYIKIFLASY--CSRYMMVGPTYRTDGFGFAFPLGSPLVPYISRAILKVTEDKEKMENIEKALGNQATCE 541 (681)
Q Consensus 464 g~~~a~i~e~~~~~~~~~~~--c~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~Il~l~e~~G~l~~i~~kw~~~~~c~ 541 (681)
|++||++.+...+.|+++++ | ++.+++..+...+++|+++|++||++.||++|.++.++ |.+++|.+||+....|.
T Consensus 216 GrvDa~i~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l~~~-G~~~~l~~kw~~~~~c~ 293 (294)
T 2rc8_A 216 EKLDAFIMDKALLDYEVSIDADC-KLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSH-GFMDVLHDKWYKVVPCG 293 (294)
T ss_dssp CCCSEEEEEHHHHHHHHHTCSSS-CEEECSCCEEEEEECCEECTTCTHHHHHHHHHHHHHHT-THHHHHHHHHCCC----
T ss_pred CceeEEEecHHHHHHHHhhCCCC-CEEEcCCcccccceEEEecCCCHHHHHHHHHHHHHHhC-CCHHHHHHhhcCCCCCC
Confidence 99999999999999998875 7 79999988888899999999999999999999999999 99999999999887786
No 5
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.93 E-value=1e-25 Score=228.37 Aligned_cols=235 Identities=20% Similarity=0.340 Sum_probs=190.8
Q ss_pred ceEEEEeeccCCccceEEEeecC-CCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCC--------CCCHHHHHHHHHhCc
Q 005717 195 RKLKIGVPVREGFTEFIKVVENK-NKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFH--------DGSFDELLHKIEKQE 265 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~-~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~--------~g~~~gli~~l~~g~ 265 (681)
++||||+...+||..+. ...++ ++++++.||++||++++++++|++++++.++.+ +.+|++++.+|.+|+
T Consensus 4 ~~l~v~~~~~~P~~~~~-~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l~~g~ 82 (259)
T 3g3k_A 4 RSLIVTTILEEPYVLFK-KSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRELIDHK 82 (259)
T ss_dssp CCEEEEECCBTTTBEEC-CCSSCCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHHTTS
T ss_pred cEEEEEEecCCCeEEEe-ecccccCCCceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHHhcCc
Confidence 67999999887764221 10001 236899999999999999999977655555421 147999999999999
Q ss_pred cceEEEeEEEeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 005717 266 FDTAVGDTTIVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEF 345 (681)
Q Consensus 266 ~Dia~~~~~it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~ 345 (681)
+|++++++++|++|.+.++||.||+..+.++++++..
T Consensus 83 ~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~------------------------------------------- 119 (259)
T 3g3k_A 83 ADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGT------------------------------------------- 119 (259)
T ss_dssp CSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSS-------------------------------------------
T ss_pred ccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCc-------------------------------------------
Confidence 9999999999999999999999999999999998653
Q ss_pred CCCCCCchhhHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhC-CCe
Q 005717 346 RGPPQHQIGTIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKN-GYF 424 (681)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~-~~~ 424 (681)
+|++++||... +..
T Consensus 120 -----------------------------------------------------------------~i~~~~dL~g~~~~~ 134 (259)
T 3g3k_A 120 -----------------------------------------------------------------PIDSADDLAKQTKIE 134 (259)
T ss_dssp -----------------------------------------------------------------SCCSHHHHHTCSSSE
T ss_pred -----------------------------------------------------------------cccCHHHhccCCCce
Confidence 47899999843 224
Q ss_pred EEEecChhHHHHHhhhcCCcc-----------ccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcCCceEEECcc
Q 005717 425 VGYQTNSFVKDLLTKKLNFNE-----------TRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSRYMMVGPT 493 (681)
Q Consensus 425 vg~~~~s~~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~l~~v~~~ 493 (681)
+|+..++....++ .....+. ..+..+++.++++++|.+|+ |+++.+...+.|+.++.| ++.+++..
T Consensus 135 ig~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-da~i~~~~~~~~~~~~~~-~l~~~~~~ 211 (259)
T 3g3k_A 135 YGAVEDGATMTFF-KRSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQRNC-NLTQIGGL 211 (259)
T ss_dssp EEEETTSHHHHHH-HHCCSHHHHHHHHHHHHTHHHHEESSHHHHHHHHHHSS-EEEEEEHHHHHHHHHHCT-TEEEESSC
T ss_pred EEEecCcHHHHHH-hhccchhHHHHHHHHHhcCCCcccCCHHHHHHHHHhCC-eEEEechHHHHHHhcCCc-eEEEeccc
Confidence 8888877777777 3322211 13456789999999999999 999999999999998888 89999998
Q ss_pred cccCCcEEEecCCCCChHHHHHHHHhhccCccHHHHHHHHHcCCCCCCC
Q 005717 494 YRTDGFGFAFPLGSPLVPYISRAILKVTEDKEKMENIEKALGNQATCEG 542 (681)
Q Consensus 494 ~~~~~~~~~~~k~spl~~~in~~Il~l~e~~G~l~~i~~kw~~~~~c~~ 542 (681)
+...+++++++|++||++.||++|.+|.++ |.+++|.+||+....|+.
T Consensus 212 ~~~~~~~~a~~k~~~l~~~in~~l~~l~~~-G~~~~i~~kw~~~~~c~~ 259 (259)
T 3g3k_A 212 IDSKGYGVGTPMGSPYRDKITLAILKLQEQ-GKLHMMKEKWWRGNGCPE 259 (259)
T ss_dssp SSCEEECCEEETTCTHHHHHHHHHHHHHHT-C-CHHHHHHHHCC--CC-
T ss_pred ceeeeEEEEECCCCccHHHHHHHHHHHHhc-ChHHHHHHhhcCCCCCCC
Confidence 888899999999999999999999999999 999999999999877863
No 6
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.93 E-value=1.6e-25 Score=230.83 Aligned_cols=208 Identities=24% Similarity=0.414 Sum_probs=169.5
Q ss_pred eeEEeehHHHHHHHHHHcCCCcCeEEEeCC------CCCHHHHHHHHHhCccceEEEeEEEeeccccccccccceeecce
Q 005717 221 TQVSGFCYDMFHAVLQVLEFPLPYEFVPFH------DGSFDELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGV 294 (681)
Q Consensus 221 ~~~~G~~idll~~l~~~l~f~~~~~~v~~~------~g~~~gli~~l~~g~~Dia~~~~~it~~R~~~vdFT~P~~~~~~ 294 (681)
+++.|+++||++++++++|+++++..++.+ .++|++++.+|.+|++|+++++++++++|.+.++||.||+.++.
T Consensus 55 ~~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~ 134 (284)
T 2a5s_A 55 KCCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEVVDFSVPFVETGI 134 (284)
T ss_dssp EEEESHHHHHHHHHHHHHTCCEEEEECCSSSSCCEETTEECHHHHHHHTTSCSEECSSCBCCHHHHTTEEECCCCEEECE
T ss_pred ceeeEEhHHHHHHHHHHCCCCEEEEEccCCccCcccCCCHHHHHHHHhcCCcCEEEEEEEEeccccceEEeccCchhcCE
Confidence 478999999999999999977544443321 15899999999999999999999999999999999999999999
Q ss_pred EEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCchhhHHHHHHHHHhccCcccccc
Q 005717 295 SMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQIGTIFWFSFSTLVFAHRERVVN 374 (681)
Q Consensus 295 ~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s 374 (681)
+++++++..
T Consensus 135 ~~~~~~~~~----------------------------------------------------------------------- 143 (284)
T 2a5s_A 135 SVMVSRGTQ----------------------------------------------------------------------- 143 (284)
T ss_dssp EEEEETTCC-----------------------------------------------------------------------
T ss_pred EEEEECCcc-----------------------------------------------------------------------
Confidence 999987642
Q ss_pred cchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhC-------CCeEEEecChhHHHHHhhhcCCccc-
Q 005717 375 NLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKN-------GYFVGYQTNSFVKDLLTKKLNFNET- 446 (681)
Q Consensus 375 ~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~-------~~~vg~~~~s~~~~~l~~~~~~~~~- 446 (681)
+++++||..+ +.+||+..++.....+.+ .++..
T Consensus 144 -------------------------------------~~~~~dl~~~~~~~l~~~~~vg~v~~~s~~~~l~~--~~~~~~ 184 (284)
T 2a5s_A 144 -------------------------------------VTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIRN--NYPYMH 184 (284)
T ss_dssp -------------------------------------CCSTTSHHHHSGGGSSSCCCEECCTTSHHHHHHHT--TCHHHH
T ss_pred -------------------------------------cccccccccCChhHcCCCceEEEEeCCchHHHHHH--HHHHHH
Confidence 3344444422 568997654444555523 23322
Q ss_pred -ccccc--CChhHHHHHHccCcceEEecchhhHHHHHhhc--CCceEEEC--cccccCCcEEEecCCCCChHHHHHHHHh
Q 005717 447 -RLKNY--TTSEDYHDALSNGEVAAIFDEIPYIKIFLASY--CSRYMMVG--PTYRTDGFGFAFPLGSPLVPYISRAILK 519 (681)
Q Consensus 447 -~~~~~--~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~--c~~l~~v~--~~~~~~~~~~~~~k~spl~~~in~~Il~ 519 (681)
+++.+ .+.++++++|.+|++||++.+.+.+.|+++++ | ++.+++ ..+...+++|+++|+++|++.||++|.+
T Consensus 185 ~~i~~~~~~~~~~~l~~l~~G~vDa~i~d~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~a~~k~~~l~~~ln~~l~~ 263 (284)
T 2a5s_A 185 QYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGC-KLVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQ 263 (284)
T ss_dssp HHHGGGCCSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCTTS-CEEEEECCCGGGCEEECCEEETTCTTHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHcCCeeEEEEchHHHHHHHhcCCCC-CEEEeCCccccccCceEEEecCCCHHHHHHHHHHHH
Confidence 35566 78999999999999999999999999999876 8 788874 5677889999999999999999999999
Q ss_pred hccCccHHHHHHHHHcCCCCCC
Q 005717 520 VTEDKEKMENIEKALGNQATCE 541 (681)
Q Consensus 520 l~e~~G~l~~i~~kw~~~~~c~ 541 (681)
+.++ |.+++|.+||+.. .|.
T Consensus 264 l~~~-g~~~~i~~kw~~~-~c~ 283 (284)
T 2a5s_A 264 FVGD-GEMEELETLWLTG-ICH 283 (284)
T ss_dssp HHHH-THHHHHHHHHTCC-CCC
T ss_pred HHhC-ChHHHHHHHhhhc-cCC
Confidence 9999 9999999999974 675
No 7
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.91 E-value=6.8e-24 Score=213.19 Aligned_cols=223 Identities=20% Similarity=0.303 Sum_probs=188.0
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++|+||+.. .|+||.+... .++++++.||++||++++++++| +++++++. .|++++.+|.+|++|+++++++
T Consensus 12 g~L~Vg~~~--~~pP~~~~~~-~d~~g~~~G~~vdl~~~ia~~lg--~~~~~~~~---~~~~~~~~l~~g~~d~~~~~~~ 83 (243)
T 4h5g_A 12 GKLVVATSP--DYAPFEFQSL-VDGKNQVVGADIDMAQAIADELG--VKLEILSM---SFDNVLTSLQTGKADLAVAGIS 83 (243)
T ss_dssp TEEEEEECC--CBTTTBEEEE-ETTEEEEESHHHHHHHHHHHHHT--SEEEEEEC---CGGGHHHHHHTTSCSEECSSCB
T ss_pred CEEEEEECC--CCCCcEeeec-cCCCCcEEEeHHHHHHHHHHHhC--CceEEecc---cHHHHHHHHHcCCCCccccccc
Confidence 579999865 3344433110 06788999999999999999999 45788886 8999999999999999999999
Q ss_pred EeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCchh
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQIG 354 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~ 354 (681)
+|++|.+.++||.||+..+.++++++....
T Consensus 84 ~t~eR~~~~~fs~py~~~~~~~~v~~~~~~-------------------------------------------------- 113 (243)
T 4h5g_A 84 ATDERKEVFDFSIPYYENKISFLVHKADVE-------------------------------------------------- 113 (243)
T ss_dssp CCHHHHTTEEECSCSBCCCEEEEEEGGGTT--------------------------------------------------
T ss_pred CChhHccEEEccCccccCcccccccccccc--------------------------------------------------
Confidence 999999999999999999999999876532
Q ss_pred hHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecChhHH
Q 005717 355 TIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNSFVK 434 (681)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s~~~ 434 (681)
.+++++||. +.+||+..|+...
T Consensus 114 --------------------------------------------------------~~~~~~dl~--g~~i~v~~g~~~~ 135 (243)
T 4h5g_A 114 --------------------------------------------------------KYKDLTSLE--SANIAAQKGTVPE 135 (243)
T ss_dssp --------------------------------------------------------TCCSHHHHH--TSEEEEETTSHHH
T ss_pred --------------------------------------------------------cccccccCC--CCEEEecCCcHHH
Confidence 478999998 8999999999988
Q ss_pred HHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcCCceEE--E-CcccccCCcEEEecCCCC-Ch
Q 005717 435 DLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSRYMM--V-GPTYRTDGFGFAFPLGSP-LV 510 (681)
Q Consensus 435 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~l~~--v-~~~~~~~~~~~~~~k~sp-l~ 510 (681)
.++.+ .++..+++.+++.++++++|.+|++|+++.+...+.+++.++. .+.. + .+.....+++|+++|++| |+
T Consensus 136 ~~l~~--~~~~~~i~~~~~~~~~~~~l~~GrvD~~~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~k~~~~L~ 212 (243)
T 4h5g_A 136 SMVKE--QLPKAQLTSLTNMGEAVNELQAGKIDAVHMDEPVALSYAAKNA-GLAVATVSLKMKDGDANAVALRKNSDDLK 212 (243)
T ss_dssp HHHHH--HCTTSEEEEESCHHHHHHHHHHTSCSEEEEEHHHHHHHHHHCT-TEEECSCCCCCCSSCCBCCEEESSCHHHH
T ss_pred HHHHH--hcccceeEEeCCHHHHHHHHHcCCccEEEecHHHHHHHHHHCC-CCceeeccCCcccCceEEEEEeCCCHHHH
Confidence 88833 3566788899999999999999999999999988888887764 3332 2 334456678999999999 99
Q ss_pred HHHHHHHHhhccCccHHHHHHHHHcCC
Q 005717 511 PYISRAILKVTEDKEKMENIEKALGNQ 537 (681)
Q Consensus 511 ~~in~~Il~l~e~~G~l~~i~~kw~~~ 537 (681)
+.||++|.+|+++ |.+++|.+||+..
T Consensus 213 ~~~n~aL~~l~~d-G~~~~i~~Kw~~~ 238 (243)
T 4h5g_A 213 EVVDKVIQKLKDE-GTYQSYLEKAASL 238 (243)
T ss_dssp HHHHHHHHHHHHH-THHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHC-CHHHHHHHHhcCC
Confidence 9999999999999 9999999999863
No 8
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.91 E-value=7.5e-24 Score=212.88 Aligned_cols=224 Identities=14% Similarity=0.164 Sum_probs=184.7
Q ss_pred CceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHc-CCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEe
Q 005717 194 PRKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVL-EFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGD 272 (681)
Q Consensus 194 p~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l-~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~ 272 (681)
.++|+||+.. .|+||.+. +.++++.||++||+++++++| | +++++++. .|++++..|.+|++|+++++
T Consensus 8 ~~tl~vg~~~--~~pP~~~~----d~~G~~~G~~vdl~~~ia~~l~g--~~~~~~~~---~~~~~~~~l~~g~~D~~~~~ 76 (243)
T 4gvo_A 8 VQTITVGTGT--QFPNVCFL----DENGKLTGYDVELVKEIDKRLPG--YKFKFKTM---DFSNLLVSLGAGKVDIVAHQ 76 (243)
T ss_dssp CEEEEEEECS--EETTTEEE----CTTSCEESHHHHHHHHHHHTCTT--EEEEEEEC---CGGGHHHHHHTTSCSEECSC
T ss_pred CCeEEEEECC--CCCCeEEE----CCCCcEEEhHHHHHHHHHHhccC--CeEEEEEC---CHHHHHHHHHCCCCCEeccc
Confidence 4789999865 34556554 567899999999999999998 8 55778876 89999999999999999999
Q ss_pred EEEeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCc
Q 005717 273 TTIVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQ 352 (681)
Q Consensus 273 ~~it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~ 352 (681)
+++|++|.+.++||.||+.....+++.++...
T Consensus 77 ~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~~~------------------------------------------------ 108 (243)
T 4gvo_A 77 MEKSKEREKKFLFNDVAYNNFPLQLTVLDSNN------------------------------------------------ 108 (243)
T ss_dssp CBCCHHHHHHSEECSSCCEECCEEEEEETTCC------------------------------------------------
T ss_pred CCCCHHHhhhhhhhhhhcccccceEEEecccc------------------------------------------------
Confidence 99999999999999998876666555544321
Q ss_pred hhhHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecChh
Q 005717 353 IGTIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNSF 432 (681)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s~ 432 (681)
.+++++||. |++||+..|+.
T Consensus 109 ----------------------------------------------------------~~~~~~dL~--g~~v~v~~gs~ 128 (243)
T 4gvo_A 109 ----------------------------------------------------------SINSTKDLA--GKRVITSATSN 128 (243)
T ss_dssp ----------------------------------------------------------SCSSGGGGT--TCEEEECTTCH
T ss_pred ----------------------------------------------------------ccCchHHhc--CCeEEEecCch
Confidence 588999998 89999999987
Q ss_pred HHHHHhh---hcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcCCceEEECcccccCCcEEEecCCCC-
Q 005717 433 VKDLLTK---KLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSRYMMVGPTYRTDGFGFAFPLGSP- 508 (681)
Q Consensus 433 ~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~l~~v~~~~~~~~~~~~~~k~sp- 508 (681)
...++.+ ...........+.+.++++++|.+|++|+++.+...+.|..++...++.++++.+...+++++++|++|
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 208 (243)
T 4gvo_A 129 GALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLGKDETK 208 (243)
T ss_dssp HHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHHTSCSBEEECHHHHHHHHHTCSSCEEEEEEEEECCEECCEECTTCHH
T ss_pred HHHHHHHHHHhccccceeccccCChHHHHHHHHcCCccEEEccHHHHHHHHhhCCCceEEeccCCCCCcEEEEEeCCCHH
Confidence 7666622 111212223356788899999999999999999988888888774377888888888899999999998
Q ss_pred ChHHHHHHHHhhccCccHHHHHHHHHcCC
Q 005717 509 LVPYISRAILKVTEDKEKMENIEKALGNQ 537 (681)
Q Consensus 509 l~~~in~~Il~l~e~~G~l~~i~~kw~~~ 537 (681)
|++.||++|.+|.++ |.+++|.+|||+.
T Consensus 209 l~~~in~~l~~l~~~-G~~~~i~~kw~g~ 236 (243)
T 4gvo_A 209 LSKKVDEALQSIIDD-GTLKKLSEKWLGA 236 (243)
T ss_dssp HHHHHHHHHHHHHHT-THHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHhC-cHHHHHHHHHCCC
Confidence 999999999999999 9999999999964
No 9
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.90 E-value=3e-23 Score=210.58 Aligned_cols=230 Identities=24% Similarity=0.369 Sum_probs=180.5
Q ss_pred ceEEEEeeccCCccceEEEeecC-CCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCC---------CCCHHHHHHHHHhC
Q 005717 195 RKLKIGVPVREGFTEFIKVVENK-NKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFH---------DGSFDELLHKIEKQ 264 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~-~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~---------~g~~~gli~~l~~g 264 (681)
++|||++...+||. +.+.++ ...+++.|+++||++++++++|++ ++++... ..+|++++.+|.+|
T Consensus 3 ~~l~v~~~~~pP~~---~~~~~~~g~~g~~~G~~~dl~~~i~~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~~l~~g 77 (265)
T 2v3u_A 3 VVLRVVTVLEEPFV---MVSENVLGKPKKYQGFSIDVLDALSNYLGFN--YEIYVAPDHKYGSPQEDGTWNGLVGELVFK 77 (265)
T ss_dssp CEEEEEECCBTTTB---EEECCSTTCCCEEESHHHHHHHHHHHHHTCE--EEEEECTTCCCCCBCTTSCBCHHHHHHHTT
T ss_pred eEEEEEEeccCCeE---EEecCCCCCcceEeEEEHHHHHHHHHHcCCc--EEEEEccCCcccccCCCCCcchHHHHHHcC
Confidence 57999999876653 332222 122789999999999999999966 5555421 15899999999999
Q ss_pred ccceEEEeEEEeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCC
Q 005717 265 EFDTAVGDTTIVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTE 344 (681)
Q Consensus 265 ~~Dia~~~~~it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~ 344 (681)
++|+++++++++++|.+.++||.||+..+.++++++..
T Consensus 78 ~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------ 115 (265)
T 2v3u_A 78 RADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGT------------------------------------------ 115 (265)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC------------------------------------------
T ss_pred CcCeEEeeeEeehhhhccccccceeeeccEEEEEECCC------------------------------------------
Confidence 99999988999999999999999999999999998643
Q ss_pred CCCCCCCchhhHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhC-CC
Q 005717 345 FRGPPQHQIGTIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKN-GY 423 (681)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~-~~ 423 (681)
+|++++||.+. +.
T Consensus 116 ------------------------------------------------------------------~i~~~~dL~~~v~v 129 (265)
T 2v3u_A 116 ------------------------------------------------------------------SIQSLQDLSKQTDI 129 (265)
T ss_dssp ------------------------------------------------------------------CCCSHHHHHTCSSS
T ss_pred ------------------------------------------------------------------CccchhhhhhhhcE
Confidence 47889999821 22
Q ss_pred eEEEecChhHHHHHhhhcCCcc------------------ccccccCChhHHHHHHccCcceEEecchhhHHHHHhhc--
Q 005717 424 FVGYQTNSFVKDLLTKKLNFNE------------------TRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASY-- 483 (681)
Q Consensus 424 ~vg~~~~s~~~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~-- 483 (681)
..|...++....++ ++.+... .++..+.+.++++++|.+|++ +++.+...+.|+++++
T Consensus 130 ~~g~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~G~~-a~~~~~~~~~~~~~~~~~ 207 (265)
T 2v3u_A 130 PYGTVLDSAVYQHV-RMKGLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKYGNY-AFVWDAAVLEYVAINDPD 207 (265)
T ss_dssp CEECBTTSHHHHHH-HHHHTCTTCSCTHHHHHHHHHCC-----CCBSSHHHHHHHHHHSSC-EEEEEHHHHHHHHHHCTT
T ss_pred EEEEeccHHHHHHH-HhcCCCcccccHHHHHHHHHHHhhcCcccccCCHHHHHHHHHcCCE-EEEEcchHHHHHHhcCCC
Confidence 45666666666676 3322221 123467899999999999999 8888888888888765
Q ss_pred CCceEEECcccccCCcEEEecCCCCChHHHHHHHHhhccCccHHHHHHHHHcCC-CCCC
Q 005717 484 CSRYMMVGPTYRTDGFGFAFPLGSPLVPYISRAILKVTEDKEKMENIEKALGNQ-ATCE 541 (681)
Q Consensus 484 c~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~Il~l~e~~G~l~~i~~kw~~~-~~c~ 541 (681)
| ++.+++..+...+++++++|++||++.||++|.++.++ |.+++|.+||+.. ..|.
T Consensus 208 ~-~l~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~-g~~~~i~~kw~~~~~~c~ 264 (265)
T 2v3u_A 208 C-SFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQS-GDMDILKHKWWPKNGQCD 264 (265)
T ss_dssp C-CEEEEC---CCEEECCEEETTCTTHHHHHHHHHHHHHH-THHHHHHHHHCCCCCC--
T ss_pred c-cEEEeccccCCcceEEEEeCCCccHHHHHHHHHHHhhC-ChHHHHHhhcCCCcCcCC
Confidence 6 79999888888889999999999999999999999999 9999999999987 7775
No 10
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.89 E-value=1.8e-22 Score=204.97 Aligned_cols=227 Identities=18% Similarity=0.307 Sum_probs=183.2
Q ss_pred ceEEEEeeccCCccceEEEeec--C-CCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCC----------CCHHHHHHHH
Q 005717 195 RKLKIGVPVREGFTEFIKVVEN--K-NKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHD----------GSFDELLHKI 261 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~--~-~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~----------g~~~gli~~l 261 (681)
++|+|++...+|| .+.+.+ + ++++++.||++||++++++++|++ ++++.... .+|++++.+|
T Consensus 4 ~~l~v~~~~~pP~---~~~~~~~~~~~~~g~~~G~~~dl~~~ia~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~l 78 (263)
T 1mqi_A 4 KTVVVTTILESPY---VMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFK--YKLTIVGDGKYGARDADTKIWNGMVGEL 78 (263)
T ss_dssp CCEEEEECCBTTT---BEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCBCTTTCCBCHHHHHH
T ss_pred eEEEEEEecCCCc---EEEecCcccccCCCceeeeHHHHHHHHHHHcCce--EEEEEccccccCccCCCCCCcHHHHHHH
Confidence 5799999876655 333211 0 124789999999999999999966 55555410 1799999999
Q ss_pred HhCccceEEEeEEEeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhccc
Q 005717 262 EKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRI 341 (681)
Q Consensus 262 ~~g~~Dia~~~~~it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~ 341 (681)
.+|++|+++++++++++|.+.++||.||+..+.++++++..
T Consensus 79 ~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~--------------------------------------- 119 (263)
T 1mqi_A 79 VYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT--------------------------------------- 119 (263)
T ss_dssp HTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC---------------------------------------
T ss_pred HcCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCcc---------------------------------------
Confidence 99999999988999999999999999999999999998653
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhC
Q 005717 342 NTEFRGPPQHQIGTIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKN 421 (681)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~ 421 (681)
++++++||.
T Consensus 120 ---------------------------------------------------------------------~i~~~~dL~-- 128 (263)
T 1mqi_A 120 ---------------------------------------------------------------------PIESAEDLS-- 128 (263)
T ss_dssp ---------------------------------------------------------------------SCCSHHHHH--
T ss_pred ---------------------------------------------------------------------ccCCHHHHh--
Confidence 478899998
Q ss_pred CCe---EEEe-cChhHHHHHhhhcCCc-----------cccccccCChhHHHHHH--ccCcceEEecchhhHHHHHhhc-
Q 005717 422 GYF---VGYQ-TNSFVKDLLTKKLNFN-----------ETRLKNYTTSEDYHDAL--SNGEVAAIFDEIPYIKIFLASY- 483 (681)
Q Consensus 422 ~~~---vg~~-~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~l--~~g~~~a~i~e~~~~~~~~~~~- 483 (681)
+.+ +|+. .++....+. + ..++ ..++..+.+.++++++| .+|+ ++++.+...+.|+.++.
T Consensus 129 g~~~~~ig~v~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~-da~~~~~~~~~~~~~~~~ 205 (263)
T 1mqi_A 129 KQTEIAYGTLDSGSTKEFFR-R-SKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGK-YAYLLESTMNEYIEQRKP 205 (263)
T ss_dssp TCSSSEEECBSSSHHHHHHH-H-CCSHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHHTTTS-EEEEEEHHHHHHHTTSTT
T ss_pred cccCeeEEEEeccHHHHHHH-h-ccchhHHHHHHHHhhCCCceecCCHHHHHHHHhhcCCc-EEEEechHHHHHHHhcCC
Confidence 554 6754 555544333 2 2221 12467788999999999 9998 89999988888888876
Q ss_pred CCceEEECcccccCCcEEEecCCCCChHHHHHHHHhhccCccHHHHHHHHHcCC-CCCC
Q 005717 484 CSRYMMVGPTYRTDGFGFAFPLGSPLVPYISRAILKVTEDKEKMENIEKALGNQ-ATCE 541 (681)
Q Consensus 484 c~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~Il~l~e~~G~l~~i~~kw~~~-~~c~ 541 (681)
| ++.+++..+...+++++++|+++|++.||++|.++.++ |.+++|.+||+.. ..|+
T Consensus 206 ~-~~~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~-g~~~~i~~k~~~~~~~C~ 262 (263)
T 1mqi_A 206 C-DTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQ-GLLDKLKNKWWYDKGECG 262 (263)
T ss_dssp C-CEEEESCCSCCEEECCEEETTCTTHHHHHHHHHHHHHT-THHHHHHHHHHTTTCSCC
T ss_pred C-ceEEcCCcccccceEEEEeCCCccHHHHHHHHHHHHhc-ccHHHHHHHHcCCCCCCC
Confidence 6 78888888888889999999999999999999999999 9999999999987 7886
No 11
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.89 E-value=1.8e-22 Score=202.44 Aligned_cols=223 Identities=20% Similarity=0.360 Sum_probs=193.5
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++||||+.. .++||... +.++++.|+++||++++++++|+ ++++++. +|.+++.+|.+|++|+++++++
T Consensus 5 ~~l~v~~~~--~~~P~~~~----~~~g~~~G~~~dl~~~i~~~~g~--~~~~~~~---~~~~~~~~l~~g~~D~~~~~~~ 73 (245)
T 3k4u_A 5 GELRVGLEP--GYLPFEMK----DKKGNVIGFDVDLAREMAKAMGV--KLKLVPT---SWDGLIPGLVTEKFDIIISGMT 73 (245)
T ss_dssp SEEEEEECT--TSTTTCEE----ETTTEEESHHHHHHHHHHHHHTC--EEEEEEC---CGGGHHHHHHTTSCSEECSSCB
T ss_pred CeEEEEECC--CcCCeeEE----CCCCCCccchHHHHHHHHHHhCC--eEEEEEc---cHHHHHHHHhCCCcCEEEecCc
Confidence 579999982 33444443 45678999999999999999995 5777776 7999999999999999988899
Q ss_pred EeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCchh
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQIG 354 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~ 354 (681)
.+++|.+.+.||.||+..+.++++++....
T Consensus 74 ~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~-------------------------------------------------- 103 (245)
T 3k4u_A 74 ISQERNLRVNFVEPYIVVGQSLLVKKGLEK-------------------------------------------------- 103 (245)
T ss_dssp CCHHHHTTSEECSCSEEECEEEEEETTTTT--------------------------------------------------
T ss_pred CCHHHHhhcCcchhhheeceEEEEECCccc--------------------------------------------------
Confidence 999999999999999999999999876421
Q ss_pred hHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecChhHH
Q 005717 355 TIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNSFVK 434 (681)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s~~~ 434 (681)
.+++++||.+.+.+||+..|+...
T Consensus 104 --------------------------------------------------------~i~~~~dL~~~g~~i~v~~g~~~~ 127 (245)
T 3k4u_A 104 --------------------------------------------------------GVKSYKDLDKPELTLVTKFGVSAE 127 (245)
T ss_dssp --------------------------------------------------------TCCSGGGGCCSSCEEEEETTSHHH
T ss_pred --------------------------------------------------------ccCCHHHhccCCcEEEEeCCcHHH
Confidence 588999998778899999999998
Q ss_pred HHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcC-CceEEECcccccCCcEEEecCCCC-ChHH
Q 005717 435 DLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYC-SRYMMVGPTYRTDGFGFAFPLGSP-LVPY 512 (681)
Q Consensus 435 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c-~~l~~v~~~~~~~~~~~~~~k~sp-l~~~ 512 (681)
.++.+ .++..++..+++.++++++|.+|++|+++.+...+.+++++.. ..+..++..+...+++++++|++| +++.
T Consensus 128 ~~l~~--~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ 205 (245)
T 3k4u_A 128 YAAKR--LFKNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFLNW 205 (245)
T ss_dssp HHHHH--HCSSSEEEEESSHHHHHHHHHSSSSEEEEEEHHHHHHHHHHTTTTTEEEECCCCSCEEECCEECTTCHHHHHH
T ss_pred HHHHh--hCCcCCEEEeCCHHHHHHHHHcCCCcEEEEcHHHHHHHHhcCCccceeecCCCcccccEEEEEcCCCHHHHHH
Confidence 88833 2455678889999999999999999999999999998877762 477888888888899999999999 9999
Q ss_pred HHHHHHhhccCccHHHHHHHHHcCC
Q 005717 513 ISRAILKVTEDKEKMENIEKALGNQ 537 (681)
Q Consensus 513 in~~Il~l~e~~G~l~~i~~kw~~~ 537 (681)
||++|.++.++ |.+++|.+||+..
T Consensus 206 ln~~l~~l~~~-g~~~~i~~k~~~~ 229 (245)
T 3k4u_A 206 LNHFLAQIKHD-GSYDELYERWFVD 229 (245)
T ss_dssp HHHHHHHHHHH-SHHHHHHHHHHTC
T ss_pred HHHHHHHHHhC-cHHHHHHHHhcCc
Confidence 99999999999 9999999999987
No 12
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.89 E-value=1.7e-22 Score=201.25 Aligned_cols=218 Identities=21% Similarity=0.334 Sum_probs=185.1
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++||||+.. .|+||.+. +.++++.|+++||++++++++|++ ++++.. +|.+++.+|.+|++|+++++++
T Consensus 5 ~~l~v~~~~--~~~P~~~~----~~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~---~~~~~~~~l~~g~~D~~~~~~~ 73 (232)
T 3i6v_A 5 DTVRMGTEG--AYPPYNFI----NDAGEVDGFERELGDELCKRAGLT--CEWVKN---DWDSIIPNLVSGNYDTIIAGMS 73 (232)
T ss_dssp -CEEEEECS--EETTTEEE----CTTSCEESHHHHHHHHHHHHHTCC--EEEEEC---CGGGHHHHHHTTSCSEECSSCB
T ss_pred CEEEEEECC--CCCCeeEE----CCCCCEeeehHHHHHHHHHHcCCc--eEEEEC---CHHHHHHHHHCCCCCEEEeCCc
Confidence 579999874 23445544 567889999999999999999955 777776 8999999999999999988899
Q ss_pred EeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCchh
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQIG 354 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~ 354 (681)
.+++|.+.++||.||+..+.++++++..
T Consensus 74 ~t~~r~~~~~fs~p~~~~~~~~~~~~~~---------------------------------------------------- 101 (232)
T 3i6v_A 74 ITDERDEVIDFTQNYIPPTASSYVATSD---------------------------------------------------- 101 (232)
T ss_dssp CCHHHHTTSEEEEEEECCCEEEEEESST----------------------------------------------------
T ss_pred CCHHHHhhcCcccccccCCeEEEEECCC----------------------------------------------------
Confidence 9999999999999999999999987542
Q ss_pred hHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecChhHH
Q 005717 355 TIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNSFVK 434 (681)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s~~~ 434 (681)
++||. | +||+..|+...
T Consensus 102 ------------------------------------------------------------~~dL~--g-~igv~~g~~~~ 118 (232)
T 3i6v_A 102 ------------------------------------------------------------GADLS--G-IVAAQTATIQA 118 (232)
T ss_dssp ------------------------------------------------------------TCCTT--S-EEEEETTSHHH
T ss_pred ------------------------------------------------------------hHHhC--C-CEEEecCchHH
Confidence 34565 7 89999999999
Q ss_pred HHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcCCceEEECc-ccccCCcEEEecCCCC-ChHH
Q 005717 435 DLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSRYMMVGP-TYRTDGFGFAFPLGSP-LVPY 512 (681)
Q Consensus 435 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~l~~v~~-~~~~~~~~~~~~k~sp-l~~~ 512 (681)
.++ +.. ..++..+++.++++++|.+|++|+++.+...+.+++++...++.+++. .+...+++++++|++| |++.
T Consensus 119 ~~l-~~~---~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ 194 (232)
T 3i6v_A 119 GYI-AES---GATLVEFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLRESDGELRGK 194 (232)
T ss_dssp HHH-HHS---SSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEEEEECTTCHHHHHH
T ss_pred HHH-Hhc---CCeEEEeCCHHHHHHHHHcCCcCEEEEChHHHHHHHHhCCCCeEEecCCCCCCCcEEEEEeCCCHHHHHH
Confidence 998 433 357788999999999999999999999999999999887337787765 4667889999999988 9999
Q ss_pred HHHHHHhhccCccHHHHHHHHHcCCCCCCCC
Q 005717 513 ISRAILKVTEDKEKMENIEKALGNQATCEGQ 543 (681)
Q Consensus 513 in~~Il~l~e~~G~l~~i~~kw~~~~~c~~~ 543 (681)
||++|.++.++ |.+++|.+||+....|...
T Consensus 195 ln~~l~~l~~~-G~~~~i~~k~~~~~~~~~~ 224 (232)
T 3i6v_A 195 FDAAITSMKED-GTLNTMIKKWFGEDAAVYE 224 (232)
T ss_dssp HHHHHHHHHHT-SHHHHHHHHHHCTTSCCC-
T ss_pred HHHHHHHHHHC-ChHHHHHHHHcCCCCCccc
Confidence 99999999999 9999999999988444443
No 13
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.88 E-value=4.8e-22 Score=199.99 Aligned_cols=219 Identities=22% Similarity=0.427 Sum_probs=190.2
Q ss_pred CceEEEEee-ccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEe
Q 005717 194 PRKLKIGVP-VREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGD 272 (681)
Q Consensus 194 p~~lrV~v~-~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~ 272 (681)
.++|+||+. ..+|| .+. .+++..|+++||++++++++|++ ++++.. +|.+++.+|.+|++|+++++
T Consensus 23 ~~~l~v~~~~~~~P~---~~~-----~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~---~~~~~~~~l~~g~~D~~~~~ 89 (249)
T 4f3p_A 23 AKELVVGTDTSFMPF---EFK-----QGDKYVGFDLDLWAEIAKGAGWT--YKIQPM---DFAGLIPALQTQNIDVALSG 89 (249)
T ss_dssp -CCEEEEEESCBTTT---BEE-----ETTEEESHHHHHHHHHHHHHTCC--EEEEEE---CGGGHHHHHHTTSCSEEEEE
T ss_pred CceEEEEeCCCCCCe---EEe-----cCCeEEEEhHHHHHHHHHHcCCc--eEEEec---CHHHHHHHHHCCCCCEEEec
Confidence 378999998 34454 432 34688999999999999999965 666665 79999999999999999988
Q ss_pred EEEeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCc
Q 005717 273 TTIVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQ 352 (681)
Q Consensus 273 ~~it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~ 352 (681)
++.+++|.+.++||.||+..+.++++++...
T Consensus 90 ~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~------------------------------------------------- 120 (249)
T 4f3p_A 90 MTIKEERRKAIDFSDPYYDSGLAAMVQANNT------------------------------------------------- 120 (249)
T ss_dssp EECCHHHHTTEEECSCCEEEEEEEEEETTCC-------------------------------------------------
T ss_pred cccCHHHHcCcceecceeeccEEEEEECCCC-------------------------------------------------
Confidence 9999999999999999999999999986542
Q ss_pred hhhHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecChh
Q 005717 353 IGTIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNSF 432 (681)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s~ 432 (681)
.+++++||. |++||+..|+.
T Consensus 121 ----------------------------------------------------------~i~~~~dL~--g~~i~v~~g~~ 140 (249)
T 4f3p_A 121 ----------------------------------------------------------TIKSIDDLN--GKVIAAKTGTA 140 (249)
T ss_dssp ----------------------------------------------------------SCCSSGGGT--TSEEEEETTSH
T ss_pred ----------------------------------------------------------CcCChHHhC--CCEEEEeCCCh
Confidence 488999997 88999999999
Q ss_pred HHHHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcC-CceEEECcccccCCcEEEecCCCCChH
Q 005717 433 VKDLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYC-SRYMMVGPTYRTDGFGFAFPLGSPLVP 511 (681)
Q Consensus 433 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c-~~l~~v~~~~~~~~~~~~~~k~spl~~ 511 (681)
...++.+. ++..++..+++.++++++|.+|++|+++.+...+.+++++.. .++.+++..+...+++++++|++|+++
T Consensus 141 ~~~~l~~~--~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~ 218 (249)
T 4f3p_A 141 TIDWIKAH--LKPKEIRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPLVA 218 (249)
T ss_dssp HHHHHHHH--CCCSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEEETTCTHHH
T ss_pred HHHHHHhc--CCCceEEEcCCHHHHHHHHHcCCeeEEEeCcHHHHHHHHhCCCCceEEecCCCCCccEEEEEcCCchHHH
Confidence 88888332 355678889999999999999999999999999999988873 468888888888899999999999999
Q ss_pred HHHHHHHhhccCccHHHHHHHHHcCC
Q 005717 512 YISRAILKVTEDKEKMENIEKALGNQ 537 (681)
Q Consensus 512 ~in~~Il~l~e~~G~l~~i~~kw~~~ 537 (681)
.||++|.++.++ |.+++|.+||+..
T Consensus 219 ~l~~~l~~l~~~-g~~~~i~~k~~~~ 243 (249)
T 4f3p_A 219 KVNAELARMKAD-GRYAKIYKKWFGS 243 (249)
T ss_dssp HHHHHHHHHHHH-THHHHHHHHHHSS
T ss_pred HHHHHHHHHHhC-CcHHHHHHHHcCC
Confidence 999999999999 9999999999976
No 14
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.88 E-value=4.2e-22 Score=199.14 Aligned_cols=220 Identities=18% Similarity=0.295 Sum_probs=191.9
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++|+||+.. .++||... +.++++.|+++||++++++++| +++++++. +|.+++.+|.+|++|+++++++
T Consensus 11 ~~l~v~~~~--~~~P~~~~----~~~g~~~G~~~dl~~~i~~~~g--~~~~~~~~---~~~~~~~~l~~g~~D~~~~~~~ 79 (242)
T 3del_B 11 EKFIVGTNA--TYPPFEFV----DKRGEVVGFDIDLAREISNKLG--KTLDVREF---SFDALILNLKQHRIDAVITGMS 79 (242)
T ss_dssp CEEEEEECS--CBTTTBEE----CTTSCEESHHHHHHHHHHHHHT--CEEEEEEC---CGGGHHHHHHTTSSSEECSSBB
T ss_pred CcEEEEeCC--CCCCeeEE----CCCCCEEEeeHHHHHHHHHHcC--CceEEEEc---CHHHHHHHHhCCCcCEEEecCc
Confidence 689999963 33445443 5678899999999999999999 45777776 7999999999999999988899
Q ss_pred Eeecccccccccccee--ecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCc
Q 005717 275 IVANRSTFVDFTLPYS--ESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQ 352 (681)
Q Consensus 275 it~~R~~~vdFT~P~~--~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~ 352 (681)
.+++|.+.++| .||+ ..+.++++++..
T Consensus 80 ~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~-------------------------------------------------- 108 (242)
T 3del_B 80 ITPSRLKEILM-IPYYGEEIKHLVLVFKGE-------------------------------------------------- 108 (242)
T ss_dssp CCHHHHTTEEE-EEEEEEEESEEEEEEESC--------------------------------------------------
T ss_pred CCHHHHhcccc-eeeeecCCceEEEEeCCC--------------------------------------------------
Confidence 99999999999 9999 899999998762
Q ss_pred hhhHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecChh
Q 005717 353 IGTIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNSF 432 (681)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s~ 432 (681)
.+++++||. |++||+..|+.
T Consensus 109 ----------------------------------------------------------~i~~~~dL~--g~~i~v~~g~~ 128 (242)
T 3del_B 109 ----------------------------------------------------------NKHPLPLTQ--YRSVAVQTGTY 128 (242)
T ss_dssp ----------------------------------------------------------CSCCCCGGG--SSCEEEETTSH
T ss_pred ----------------------------------------------------------CCCCHHHhC--CCEEEEEcCcH
Confidence 478899997 88999999999
Q ss_pred HHHHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcCCceEEECcccccCC----cEEEecCCCC
Q 005717 433 VKDLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSRYMMVGPTYRTDG----FGFAFPLGSP 508 (681)
Q Consensus 433 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~l~~v~~~~~~~~----~~~~~~k~sp 508 (681)
...++ .. .+..+++.+.+.++++++|.+|++|+++.+...+.+++++.. .+.+++..+.... ++++++|++|
T Consensus 129 ~~~~l-~~--~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k~~~ 204 (242)
T 3del_B 129 QEAYL-QS--LSEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFP-ALSTATIDLPEDQWVLGYGIGVASDRP 204 (242)
T ss_dssp HHHHH-HH--STTCCEEEESSHHHHHHHHHTTSSSEEEECHHHHHHHGGGCT-TEEEEEEECCGGGCEEEEEEEEETTCH
T ss_pred HHHHH-Hh--CCCceEEEECCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCC-CeEEecCccCcccccceEEEEEeCCCH
Confidence 99988 43 556678889999999999999999999999999999998887 5888877777777 9999999988
Q ss_pred -ChHHHHHHHHhhccCccHHHHHHHHHcCCCCCC
Q 005717 509 -LVPYISRAILKVTEDKEKMENIEKALGNQATCE 541 (681)
Q Consensus 509 -l~~~in~~Il~l~e~~G~l~~i~~kw~~~~~c~ 541 (681)
+++.||++|.++.++ |.+++|.+||+....|+
T Consensus 205 ~l~~~l~~~l~~l~~~-g~~~~i~~k~~~~~~~~ 237 (242)
T 3del_B 205 ALALKIEAAVQEIRKE-GVLAELEQKWGLNNLEH 237 (242)
T ss_dssp HHHHHHHHHHHHHHHT-THHHHHHHHTTGGGCSS
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHCCCCCcc
Confidence 999999999999999 99999999999874444
No 15
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.88 E-value=3.9e-22 Score=203.03 Aligned_cols=221 Identities=17% Similarity=0.265 Sum_probs=191.6
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++||||+... |+||.+. +.++++.|+++||++++++++|+ +++++.. +|.+++.+|.+|++|+++++++
T Consensus 21 ~~l~v~~~~~--~~P~~~~----~~~g~~~G~~~dl~~~i~~~~g~--~~~~~~~---~~~~~~~~l~~g~~D~~~~~~~ 89 (268)
T 3hv1_A 21 KKIKIGFDAT--FVPMGYE----EKDGSYIGFDIDLANAVFKLYGI--DVEWQAI---DWDMKETELKNGTIDLIWNGYS 89 (268)
T ss_dssp TEEEEEECTE--ETTTEEE----CTTSCEECHHHHHHHHHHHTTTC--EEEEEEC---CGGGHHHHHHHTSCSEECSSCB
T ss_pred CcEEEEECCC--CCCceEE----CCCCCEEEehHHHHHHHHHHhCC--cEEEEEC---CHHHHHHHHHCCCCCEEEecCc
Confidence 7899999753 3445544 55788999999999999999995 5777776 6999999999999999988899
Q ss_pred EeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCchh
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQIG 354 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~ 354 (681)
.+++|.+.++||.||+..+.++++++..
T Consensus 90 ~t~~r~~~~~fs~p~~~~~~~~~~~~~~---------------------------------------------------- 117 (268)
T 3hv1_A 90 VTDERKQSADFTEPYMVNEQVLVTKKSS---------------------------------------------------- 117 (268)
T ss_dssp CCHHHHTTCEECCCCEEECEEEEEEGGG----------------------------------------------------
T ss_pred cCHHHHhcCcCcHHHeeCceEEEEECCC----------------------------------------------------
Confidence 9999999999999999999999998654
Q ss_pred hHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecChhHH
Q 005717 355 TIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNSFVK 434 (681)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s~~~ 434 (681)
.+++++||. |++||+..|+...
T Consensus 118 --------------------------------------------------------~i~~~~dL~--g~~i~v~~g~~~~ 139 (268)
T 3hv1_A 118 --------------------------------------------------------GIDSVAGMA--GKTLGAQAGSSGY 139 (268)
T ss_dssp --------------------------------------------------------CCCSSGGGT--TCCEEEETTCHHH
T ss_pred --------------------------------------------------------CCCCHHHhC--CCEEEEEeCCchH
Confidence 378899997 8899999999988
Q ss_pred HHHhhhc-----CCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcC--CceEEECcccccCCcEEEecCCC
Q 005717 435 DLLTKKL-----NFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYC--SRYMMVGPTYRTDGFGFAFPLGS 507 (681)
Q Consensus 435 ~~l~~~~-----~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c--~~l~~v~~~~~~~~~~~~~~k~s 507 (681)
.++.+.. .++..++..+.+.++++++|.+|++|+++.+...+.+++++.. .++.+++..+...+++++++|++
T Consensus 140 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~ 219 (268)
T 3hv1_A 140 DAFNASPKILKDVVANQKVVQYSTFTQALIDLNSGRIDGLLIDRVYANYYLEKSGVLDQYNVMPAGYEGESFAVGARKVD 219 (268)
T ss_dssp HHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHTTCGGGEEEEECSSCCEEECCEECTTC
T ss_pred HHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcCCCCEEEeCHHHHHHHHHhCCCCCceEECCCCCCCCcEEEEEcCCC
Confidence 8773221 1334577888999999999999999999999999999888763 47888888788888999999999
Q ss_pred C-ChHHHHHHHHhhccCccHHHHHHHHHcCC
Q 005717 508 P-LVPYISRAILKVTEDKEKMENIEKALGNQ 537 (681)
Q Consensus 508 p-l~~~in~~Il~l~e~~G~l~~i~~kw~~~ 537 (681)
| +++.||++|.++.++ |.+++|.+||+..
T Consensus 220 ~~l~~~ln~~l~~l~~~-g~~~~i~~k~~~~ 249 (268)
T 3hv1_A 220 KTLIKKINQGFETLYKN-GEFQKISNKWFGE 249 (268)
T ss_dssp HHHHHHHHHHHHHHHHH-THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhC-CHHHHHHHHhcCC
Confidence 8 999999999999999 9999999999987
No 16
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.88 E-value=2.9e-22 Score=199.92 Aligned_cols=220 Identities=20% Similarity=0.302 Sum_probs=187.5
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++||||+.. .++||.... +.++++.|+++|+++++++++|+ +++++.. +|.+++.+|.+|++|+++++++
T Consensus 3 ~~l~v~~~~--~~~P~~~~~---~~~g~~~G~~~dl~~~i~~~~g~--~~~~~~~---~~~~~~~~l~~g~~D~~~~~~~ 72 (237)
T 3kzg_A 3 LNLTIGTSK--FNPPFEVWS---GNNSSLYGFDIDLMQEICRRLHA--TCTFEAY---IFDDLFPALKNREVDLVIASMI 72 (237)
T ss_dssp CEEEEEEES--EETTTEECC---CTTSCCBSHHHHHHHHHHHHTTC--EEEEEEE---CGGGHHHHHHTTSSSEECSSCB
T ss_pred ceEEEEECC--CCCCeEEEe---CCCCCEeeehHHHHHHHHHHhCC--ceEEEEc---CHHHHHHHHhCCCCCEEEEccc
Confidence 579999985 234455420 14667899999999999999995 4667666 7999999999999999988899
Q ss_pred EeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCchh
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQIG 354 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~ 354 (681)
.+++|.+.++||.||+..+.++++++..
T Consensus 73 ~~~~r~~~~~fs~p~~~~~~~~~~~~~~---------------------------------------------------- 100 (237)
T 3kzg_A 73 ITDERKKHFIFSLPYMESNSQYITTVDS---------------------------------------------------- 100 (237)
T ss_dssp CCTTGGGTCEECCCSBCCEEEEEEETTC----------------------------------------------------
T ss_pred cChhHhccceeeeeeeecceEEEEECCC----------------------------------------------------
Confidence 9999999999999999999999998653
Q ss_pred hHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecChhHH
Q 005717 355 TIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNSFVK 434 (681)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s~~~ 434 (681)
++++++||. |++||+..|+...
T Consensus 101 --------------------------------------------------------~~~~~~dL~--g~~i~~~~g~~~~ 122 (237)
T 3kzg_A 101 --------------------------------------------------------KISTFDDLH--GKKIGVRKGTPYA 122 (237)
T ss_dssp --------------------------------------------------------SCCSGGGGT--TCEEEEETTSTHH
T ss_pred --------------------------------------------------------CCCCHHHhC--CCEEEEecCCHHH
Confidence 378899998 8899999999877
Q ss_pred HHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcC-------CceEEECccc-ccCCcEEEecCC
Q 005717 435 DLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYC-------SRYMMVGPTY-RTDGFGFAFPLG 506 (681)
Q Consensus 435 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c-------~~l~~v~~~~-~~~~~~~~~~k~ 506 (681)
..+.+ .++..++..+.+.++++++|.+|++|+++.+...+.+++++.. .++.+++..+ ...+++++++|+
T Consensus 123 ~~~~~--~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k~ 200 (237)
T 3kzg_A 123 RQVLS--ENRNNQVIFYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSIMANPD 200 (237)
T ss_dssp HHHHH--TCSSCEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTTCBCCEECGG
T ss_pred HHHHH--hCCCCcEEEeCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHhCCccccccCCceEEecCccccCccEEEEEcCC
Confidence 77633 2444678889999999999999999999999999999988754 2788888877 888999999999
Q ss_pred CC-ChHHHHHHHHhhccCccHHHHHHHHHcCC
Q 005717 507 SP-LVPYISRAILKVTEDKEKMENIEKALGNQ 537 (681)
Q Consensus 507 sp-l~~~in~~Il~l~e~~G~l~~i~~kw~~~ 537 (681)
+| +++.||++|.++.++ |.+++|.+||+..
T Consensus 201 ~~~l~~~l~~~l~~l~~~-G~~~~i~~k~~~~ 231 (237)
T 3kzg_A 201 QFVLIKKINKILLEMEAD-GTYLRLYSEYFEG 231 (237)
T ss_dssp GHHHHHHHHHHHHHHHHS-SHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHHHC-CcHHHHHHHHhCc
Confidence 77 999999999999999 9999999999986
No 17
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=99.87 E-value=4.7e-22 Score=213.69 Aligned_cols=170 Identities=17% Similarity=0.248 Sum_probs=141.9
Q ss_pred CCCCCeEEEecCCccccCCccccccCccceEEEEEecCCChhHHHHHHHHHhh-cCCCCCCCCCCchhHHHHHHHHHHHH
Q 005717 1 MMSEGYAWIATQGLSTLLDPVKDMESMQGVLGLRPYIPSSKKLEHFKLRWIKS-ADKPDGSTGGSNLFGLWAYDTVWAIA 79 (681)
Q Consensus 1 mm~~~y~WI~t~~~~~~~~~~~~~~~~~Gvlg~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~aYDav~~lA 79 (681)
|++++|+||++++.....+..++.....|++|++.+.+.++.+++|.++|++. ..........++.+++++|||||++|
T Consensus 209 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~YDAV~~~A 288 (389)
T 4gpa_A 209 KHVKGYHYIIANLGFKDISLERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTSALTYDGVLVMA 288 (389)
T ss_dssp CSBTTCEEEECSSBGGGSCCHHHHHHBCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTTTTSCCCHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEeCccccchhhhhhhhcccceEEEEeecCCChHHHHHHHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHH
Confidence 67899999999987777666566778889999999999999999999999876 32222333467889999999999999
Q ss_pred HHHHHHcccCCcccccCCCCCCCcccccCCCcchHHHHHHHhccceecceeeEEE-eCCcccCccEEEEEeeeCCeeEee
Q 005717 80 MAVERAGIENSSFLKSNTSKSRVDIAALGTFEMGAKLLDTLINTTFEGLSGNFHL-VNGQLEPSAFEIFNVIGTSERVIG 158 (681)
Q Consensus 80 ~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~l~~~~f~GltG~i~F-~~G~~~~~~~~I~n~~~~~~~~vG 158 (681)
+||+++.......... .......|....+|.+|..|+++|++++|+|+||+|+| ++|+|.+..|+|+|++++++++||
T Consensus 289 ~Al~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~~~VG 367 (389)
T 4gpa_A 289 ETFRSLRRQKIDISRR-GNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVG 367 (389)
T ss_dssp HHHHHHHHTTCCCCCT-TCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEEEEEE
T ss_pred HHHHHHHhhccccccc-CCccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEEEEEE
Confidence 9999998765433221 12224556777889999999999999999999999999 899999899999999999999999
Q ss_pred eeeCCCCcccccc
Q 005717 159 YWTKEKELLSELN 171 (681)
Q Consensus 159 ~W~~~~gl~~~~~ 171 (681)
+|++.+|+.+..+
T Consensus 368 ~W~~~~gl~~~~~ 380 (389)
T 4gpa_A 368 YWNDMDKLVLIQD 380 (389)
T ss_dssp EEETTTEEEECCC
T ss_pred EEECCCCeEECCC
Confidence 9999999886543
No 18
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.87 E-value=4.1e-22 Score=198.83 Aligned_cols=220 Identities=14% Similarity=0.227 Sum_probs=188.2
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++||||+.. .++||... +.++++.|+++||++++++++|+ ++++++. +|.+++.+|.+|++|+++++++
T Consensus 15 ~~l~v~~~~--~~~P~~~~----~~~g~~~G~~~dl~~~i~~~~g~--~~~~~~~---~~~~~~~~l~~g~~D~~~~~~~ 83 (239)
T 3kbr_A 15 GVLRVATTG--DYKPFSYR----TEEGGYAGFDVDMAQRLAESLGA--KLVVVPT---SWPNLMRDFADDRFDIAMSGIS 83 (239)
T ss_dssp TEEEEEECS--EETTTEEE----CTTSCEESHHHHHHHHHHHHTTC--EEEEEEC---CTTTHHHHHHTTCCSEECSSCB
T ss_pred CeEEEEECC--CCCCeeEE----CCCCCEEeehHHHHHHHHHHHCC--ceEEEEe---CHHHHHHHHHCCCcCEEEeCCc
Confidence 689999964 23445544 55788999999999999999995 5777776 7999999999999999988899
Q ss_pred EeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCchh
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQIG 354 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~ 354 (681)
.+++|.+.++||.||+..+.++++++....
T Consensus 84 ~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~-------------------------------------------------- 113 (239)
T 3kbr_A 84 INLERQRQAYFSIPYLRDGKTPITLCSEEA-------------------------------------------------- 113 (239)
T ss_dssp CCHHHHTTCEECSCSEEECEEEEEEGGGGG--------------------------------------------------
T ss_pred CCHHHcCccccchHHhccCcEEEEECCccc--------------------------------------------------
Confidence 999999999999999999999999876421
Q ss_pred hHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecChhHH
Q 005717 355 TIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNSFVK 434 (681)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s~~~ 434 (681)
.+++++||...+.+||+..|+...
T Consensus 114 --------------------------------------------------------~i~~~~dL~~~g~~v~~~~g~~~~ 137 (239)
T 3kbr_A 114 --------------------------------------------------------RFQTLEQIDQPGVTAIVNPGGTNE 137 (239)
T ss_dssp --------------------------------------------------------GGSSHHHHSSTTCEEEECTTSHHH
T ss_pred --------------------------------------------------------ccCCHHHhcCCCcEEEEcCCCcHH
Confidence 478999998767899999999988
Q ss_pred HHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcCCceEEEC--cccccCCcEEEecCCCC-ChH
Q 005717 435 DLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSRYMMVG--PTYRTDGFGFAFPLGSP-LVP 511 (681)
Q Consensus 435 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~l~~v~--~~~~~~~~~~~~~k~sp-l~~ 511 (681)
.++.+ .++..++..+++.++++++|.+|++|+++.+...+.++++++. ++.++. ..+...+++++++| .+ +++
T Consensus 138 ~~l~~--~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~k-~~~l~~ 213 (239)
T 3kbr_A 138 KFARA--NLKKARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHP-ELCAVHPQQPFDFAEKAYLLPR-DEAFKR 213 (239)
T ss_dssp HHHHH--HCSSSEEEECCCTTTHHHHHHTTSCSEEEEEHHHHHHHHHHCT-TEEECCCC-CCCCEEECCEECS-CHHHHH
T ss_pred HHHHH--hCCCCceEEeCCHHHHHHHHHcCCcCEEEEchHHHHHHHHhCC-CcEEecCCCCccccceEEEEcC-CHHHHH
Confidence 88833 2455678889999999999999999999999999999998876 566664 34677789999999 55 999
Q ss_pred HHHHHHHhhccCccHHHHHHHHHcC
Q 005717 512 YISRAILKVTEDKEKMENIEKALGN 536 (681)
Q Consensus 512 ~in~~Il~l~e~~G~l~~i~~kw~~ 536 (681)
.||++|.++.++ |.+++|.+||++
T Consensus 214 ~ln~~l~~l~~~-g~~~~i~~k~~~ 237 (239)
T 3kbr_A 214 YVDQWLHIAEQS-GLLRQRMEHWLE 237 (239)
T ss_dssp HHHHHHHHHHHH-THHHHHHHHHC-
T ss_pred HHHHHHHHHHHC-CcHHHHHHHHhc
Confidence 999999999999 999999999995
No 19
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.87 E-value=6.9e-21 Score=188.71 Aligned_cols=221 Identities=18% Similarity=0.267 Sum_probs=185.9
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++|+||+...+| |...+ ++.++++.|+++|+++++++++|++ ++++.. ++|.+++.+|.+|++|+++++++
T Consensus 4 ~~l~v~~~~~~P---~~~~~--~~~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~--~~~~~~~~~l~~g~~D~~~~~~~ 74 (233)
T 1ii5_A 4 MALKVGVVGNPP---FVFYG--EGKNAAFTGISLDVWRAVAESQKWN--SEYVRQ--NSISAGITAVAEGELDILIGPIS 74 (233)
T ss_dssp CCEEEEECCCTT---TCEEC-------CEESHHHHHHHHHHHHHTCC--EEEEEC--SCHHHHHHHHHTTSCSEEEEEEE
T ss_pred ceEEEEecCCCC---eEEEe--cCCCCCEEEEeHHHHHHHHHHcCCc--EEEEEe--CCHHHHHHHHHCCCcCEEEeeee
Confidence 579999976544 44321 0135689999999999999999955 677765 48999999999999999998889
Q ss_pred Eeeccc--cccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCc
Q 005717 275 IVANRS--TFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQ 352 (681)
Q Consensus 275 it~~R~--~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~ 352 (681)
.+++|. +.++|+.||+..+.++++++....
T Consensus 75 ~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~~~------------------------------------------------ 106 (233)
T 1ii5_A 75 VTPERAAIEGITFTQPYFSSGIGLLIPGTATP------------------------------------------------ 106 (233)
T ss_dssp CCHHHHTSTTEEECCCCEEEEEEEEEEGGGTT------------------------------------------------
T ss_pred cCccccccceeEEccceeecCeEEEEECCCCC------------------------------------------------
Confidence 999999 999999999999999999876421
Q ss_pred hhhHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecChh
Q 005717 353 IGTIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNSF 432 (681)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s~ 432 (681)
.+++++||. |.+||+..|+.
T Consensus 107 ----------------------------------------------------------~i~~~~dL~--g~~v~~~~g~~ 126 (233)
T 1ii5_A 107 ----------------------------------------------------------LFRSVGDLK--NKEVAVVRDTT 126 (233)
T ss_dssp ----------------------------------------------------------TCSSGGGGT--TCEEEEETTSH
T ss_pred ----------------------------------------------------------CCCCHHHhC--CCeEEEECCcc
Confidence 488999998 88999999999
Q ss_pred HHHHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcC-CceEEECcccccCCcEEEecCCCCChH
Q 005717 433 VKDLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYC-SRYMMVGPTYRTDGFGFAFPLGSPLVP 511 (681)
Q Consensus 433 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c-~~l~~v~~~~~~~~~~~~~~k~spl~~ 511 (681)
...++ +.. ..++..+.+.++++++|.+|++|+++.+...+.+++++.. .++.+++..+...+++++++|++|+.+
T Consensus 127 ~~~~l-~~~---~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 202 (233)
T 1ii5_A 127 AVDWA-NFY---QADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKENSPLQK 202 (233)
T ss_dssp HHHHH-HHT---TCEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEEEEEEETTCTTHH
T ss_pred HHHHH-HHc---CCCeEEcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCcEEEeCccccccceEEEEcCCchHHH
Confidence 88888 433 3366778899999999999999999999999999888763 368888777777789999999999999
Q ss_pred HHHHHHHhhccCccHHHHHHHHHcCC
Q 005717 512 YISRAILKVTEDKEKMENIEKALGNQ 537 (681)
Q Consensus 512 ~in~~Il~l~e~~G~l~~i~~kw~~~ 537 (681)
.+|++|.++.++ |.++++.+||+..
T Consensus 203 ~~~~~l~~l~~~-g~~~~i~~k~~~~ 227 (233)
T 1ii5_A 203 TINVEMLNLLYS-RVIAEFTERWLGP 227 (233)
T ss_dssp HHHHHHHHHHHT-THHHHHHHHHHC-
T ss_pred HHHHHHHHHHhC-CcHHHHHHHHcCC
Confidence 999999999999 9999999999965
No 20
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.87 E-value=2.7e-21 Score=190.70 Aligned_cols=218 Identities=22% Similarity=0.374 Sum_probs=181.9
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++||||+.. .++||... +.++++.|+++|+++++++++|++ +++++. +|.+++.+|.+|++|+++++++
T Consensus 2 ~~l~v~~~~--~~~P~~~~----~~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~---~~~~~~~~l~~g~~D~~~~~~~ 70 (227)
T 3tql_A 2 DTIKFATEA--TYPPYVYM----GPSGQVEGFGADIVKAVCKQMQAV--CTISNQ---PWDSLIPSLKLGKFDALFGGMN 70 (227)
T ss_dssp CEEEEEECS--CBTTTBEE----C--CCEESHHHHHHHHHHHHTTCE--EEEEEC---CHHHHHHHHHHTSCSEECSSCB
T ss_pred ceEEEEEcC--CCCCeeEE----CCCCCcccchHHHHHHHHHHhCCe--EEEEeC---CHHHHHHHHhCCCCCEEEecCc
Confidence 579999975 23344443 557789999999999999999954 777776 7999999999999999988889
Q ss_pred EeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCchh
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQIG 354 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~ 354 (681)
.+++|.+.+.||.||+..+.++++++...
T Consensus 71 ~~~~r~~~~~~s~p~~~~~~~l~~~~~~~--------------------------------------------------- 99 (227)
T 3tql_A 71 ITTARQKEVDFTDPYYTNSVSFIADKNTP--------------------------------------------------- 99 (227)
T ss_dssp CCTTGGGTEEECSCSBCCEEEEEEETTSC---------------------------------------------------
T ss_pred CCHhHHhheecccceeccceEEEEeCCCC---------------------------------------------------
Confidence 99999999999999999999999886642
Q ss_pred hHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecChhHH
Q 005717 355 TIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNSFVK 434 (681)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s~~~ 434 (681)
.+++++||. |++||+..|+...
T Consensus 100 --------------------------------------------------------~~~~~~dL~--g~~v~~~~g~~~~ 121 (227)
T 3tql_A 100 --------------------------------------------------------LTLSKQGLK--GKIIGVQGGTTFD 121 (227)
T ss_dssp --------------------------------------------------------CCCSTTTTT--TCEEEEETTSHHH
T ss_pred --------------------------------------------------------CCCCHHHhC--CCEEEEEecccHH
Confidence 236788997 8899999999988
Q ss_pred HHHhhhcCCcc-ccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcC-CceEEECccccc-----CCcEEEecCCC
Q 005717 435 DLLTKKLNFNE-TRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYC-SRYMMVGPTYRT-----DGFGFAFPLGS 507 (681)
Q Consensus 435 ~~l~~~~~~~~-~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c-~~l~~v~~~~~~-----~~~~~~~~k~s 507 (681)
.++.+. . +. .++..+.+.++++++|.+|++|+++.+...+.+++++.. .++.+++..+.. .+++++++|++
T Consensus 122 ~~l~~~-~-~~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (227)
T 3tql_A 122 SYLQDS-F-GNSITIQRYPSEEDALMDLTSGRVDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVKKGN 199 (227)
T ss_dssp HHHHHH-H-GGGSEEEEESSHHHHHHHHTTTSSSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEETTC
T ss_pred HHHHHh-c-cccceEEEcCCHHHHHHHHHcCCcCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEcCCC
Confidence 888332 2 22 577889999999999999999999999999999888874 247777554433 35599999999
Q ss_pred C-ChHHHHHHHHhhccCccHHHHHHHHHc
Q 005717 508 P-LVPYISRAILKVTEDKEKMENIEKALG 535 (681)
Q Consensus 508 p-l~~~in~~Il~l~e~~G~l~~i~~kw~ 535 (681)
| +++.||++|.++.++ |.++++.+||+
T Consensus 200 ~~l~~~l~~~l~~l~~~-g~~~~i~~k~~ 227 (227)
T 3tql_A 200 QALLLKLNKALAAIKAN-GVYAAIVQKYF 227 (227)
T ss_dssp HHHHHHHHHHHHHHHHT-SHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhC-ChHHHHHHhhC
Confidence 8 999999999999999 99999999997
No 21
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.86 E-value=8.5e-21 Score=192.29 Aligned_cols=222 Identities=18% Similarity=0.309 Sum_probs=187.2
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++|+||+... |+||... +.++++.|+++|+++++++++|+ ++++++. +|.+++.+|.+|++|+++++++
T Consensus 29 ~~l~v~~~~~--~~P~~~~----~~~g~~~G~~~dl~~~i~~~~g~--~~~~~~~---~~~~~~~~l~~g~~D~~~~~~~ 97 (259)
T 4dz1_A 29 RTLNVAVSPA--SPPMLFK----SADGKLQGIDLELFSSYCQSRHC--KLNITEY---AWDGMLGAVASGQADVAFSGIS 97 (259)
T ss_dssp CEEEEEECCC--BTTTBEE----CTTCCEESHHHHHHHHHHHHHTC--EEEEEEC---CHHHHHHHHHHTSSSEEEEEEE
T ss_pred CeEEEEECCC--CCCeEEE----CCCCCEEEeHHHHHHHHHHHhCC--eEEEEEc---CHHHHHHHHhCCCCCEEEECCc
Confidence 6899999742 3344443 55778999999999999999995 5777776 8999999999999999999999
Q ss_pred EeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCchh
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQIG 354 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~ 354 (681)
.+++|.+.++||.||+..+..+++++....
T Consensus 98 ~t~~r~~~~~fs~p~~~~~~~~~~~~~~~~-------------------------------------------------- 127 (259)
T 4dz1_A 98 ITDKRKKVIDFSEPYYINSFYLVSMANHKI-------------------------------------------------- 127 (259)
T ss_dssp CCHHHHTTEEECCCSEEEEEEEEEETTSCC--------------------------------------------------
T ss_pred CCHHHhhccccccchhhCceEEEEEcCCCC--------------------------------------------------
Confidence 999999999999999999999999866431
Q ss_pred hHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecChhHH
Q 005717 355 TIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNSFVK 434 (681)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s~~~ 434 (681)
.|++++||. |++||+..|+...
T Consensus 128 --------------------------------------------------------~i~~~~dL~--g~~v~v~~g~~~~ 149 (259)
T 4dz1_A 128 --------------------------------------------------------TLNNLNELN--KYSIGYPRGMAYS 149 (259)
T ss_dssp --------------------------------------------------------CCCSGGGGG--GSCEEEETTSTHH
T ss_pred --------------------------------------------------------CCCCHHHhC--CCEEEEeCCcHHH
Confidence 488999998 8899999999988
Q ss_pred HHHhhhc---CCcc-ccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcCCceEEECcccccCCcEEEecCCCCCh
Q 005717 435 DLLTKKL---NFNE-TRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSRYMMVGPTYRTDGFGFAFPLGSPLV 510 (681)
Q Consensus 435 ~~l~~~~---~~~~-~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~l~~v~~~~~~~~~~~~~~k~spl~ 510 (681)
.++.+.. +++. .++..+++.+++.++|.+|++|+++.+...+.++.++...++..........+++++++|+++|+
T Consensus 150 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~ 229 (259)
T 4dz1_A 150 DLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAFKKGSPVR 229 (259)
T ss_dssp HHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHTSCCCEEEEEEEEEEEEEEEEEETTCHHH
T ss_pred HHHHHhcccccccccceeEecCCHHHHHHHHHcCCCCEEEecHHHHHHHhccCCCceEeecccCCCceEEEEEeCChHHH
Confidence 8873321 1111 57788999999999999999999999998888887766336777666666788999999999999
Q ss_pred HHHHHHHHhhccCccHHHHHHHHHcCC
Q 005717 511 PYISRAILKVTEDKEKMENIEKALGNQ 537 (681)
Q Consensus 511 ~~in~~Il~l~e~~G~l~~i~~kw~~~ 537 (681)
+.||++|.+ ..+ |.++++.++|...
T Consensus 230 ~~ln~~l~~-~g~-~~l~~~~~~~~~~ 254 (259)
T 4dz1_A 230 DDFNLWLKE-QGP-QKISGIVDSWMKH 254 (259)
T ss_dssp HHHHHHHHH-HCH-HHHHHHHHHHTCC
T ss_pred HHHHHHHHh-CCC-eehHHHHHHHHhh
Confidence 999999999 777 9999999999875
No 22
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.86 E-value=8.5e-21 Score=188.21 Aligned_cols=219 Identities=14% Similarity=0.212 Sum_probs=188.1
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++|+||+.. .++||... +.++.+.|+++|+++++++++|++ ++++.. +|..++.+|.+|++|++ .+++
T Consensus 11 ~~l~v~~~~--~~~P~~~~----~~~g~~~G~~~dl~~~i~~~~g~~--~~~~~~---~~~~~~~~l~~g~~D~~-~~~~ 78 (234)
T 3h7m_A 11 RTIVVGGDR--DYPPYEFI----DQNGKPAGYNVELTRAIAEVMGMT--VEFRLG---AWSEMFSALKSGRVDVL-QGIS 78 (234)
T ss_dssp SCEEEEEET--EETTTEEE----CTTSCEESHHHHHHHHHHHHHTCC--EEEEEE---CGGGHHHHHHTTSSSEE-EEEE
T ss_pred CEEEEEecC--CCCCeEEE----CCCCCEeeeEHHHHHHHHHHcCCc--eEEEeC---CHHHHHHHHhCCCeeEE-Eecc
Confidence 689999853 23445544 567889999999999999999965 566654 79999999999999995 6689
Q ss_pred EeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCchh
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQIG 354 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~ 354 (681)
.+++|.+.+.||.||+..+.++++++...
T Consensus 79 ~~~~r~~~~~~s~p~~~~~~~~~~~~~~~--------------------------------------------------- 107 (234)
T 3h7m_A 79 WSEKRARQIDFTPPHTIVYHAIFARRDSP--------------------------------------------------- 107 (234)
T ss_dssp CCHHHHTTEEEEEEEEEEEEEEEEESSSC---------------------------------------------------
T ss_pred CCHhHHhhcCCCccccccceEEEEECCCC---------------------------------------------------
Confidence 99999999999999999999999886542
Q ss_pred hHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecChhHH
Q 005717 355 TIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNSFVK 434 (681)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s~~~ 434 (681)
.+++++||. |.+||+..|+...
T Consensus 108 --------------------------------------------------------~~~~~~dL~--g~~i~~~~g~~~~ 129 (234)
T 3h7m_A 108 --------------------------------------------------------PAAGLEDLR--GRKVALHRDGIMH 129 (234)
T ss_dssp --------------------------------------------------------CCSSGGGGT--TSCEEEETTSHHH
T ss_pred --------------------------------------------------------CCCCHHHhC--CCEEEEEeCchHH
Confidence 388999997 8899999999988
Q ss_pred HHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhc-CCceEEECcccccCCcEEEecCCCC-ChHH
Q 005717 435 DLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASY-CSRYMMVGPTYRTDGFGFAFPLGSP-LVPY 512 (681)
Q Consensus 435 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~-c~~l~~v~~~~~~~~~~~~~~k~sp-l~~~ 512 (681)
.++ ++. .+..++..+.+.++++++|.+|++|+++.+...+.+++++. ..++.+++..+...+++++++|++| +++.
T Consensus 130 ~~l-~~~-~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 207 (234)
T 3h7m_A 130 EYL-AER-GYGKDLVLTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQGDAELLAR 207 (234)
T ss_dssp HHH-HTT-TCGGGEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEEEEEEETTCHHHHHH
T ss_pred HHH-Hhc-CCCceEEEeCCHHHHHHHHHcCCceEEEeccHHHHHHHHhcCCCceEEeccccCCCceEEEEeCCCHHHHHH
Confidence 888 432 33457788899999999999999999999999999888876 3478888877788889999999998 9999
Q ss_pred HHHHHHhhccCccHHHHHHHHHcCC
Q 005717 513 ISRAILKVTEDKEKMENIEKALGNQ 537 (681)
Q Consensus 513 in~~Il~l~e~~G~l~~i~~kw~~~ 537 (681)
||++|.++.++ |.+++|.+||+..
T Consensus 208 l~~~l~~l~~~-g~~~~i~~k~~~~ 231 (234)
T 3h7m_A 208 FSEGLAILRKT-GQYEAIRAKWLGV 231 (234)
T ss_dssp HHHHHHHHHHH-THHHHHHHHSTTC
T ss_pred HHHHHHHHHHc-CcHHHHHHHhccc
Confidence 99999999999 9999999999964
No 23
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.85 E-value=4.2e-21 Score=192.14 Aligned_cols=222 Identities=12% Similarity=0.201 Sum_probs=184.5
Q ss_pred CceEEEEeec-cCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcC-CCcCeEEEeCCCCCHHHHHHHHHhCccceEEE
Q 005717 194 PRKLKIGVPV-REGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLE-FPLPYEFVPFHDGSFDELLHKIEKQEFDTAVG 271 (681)
Q Consensus 194 p~~lrV~v~~-~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~-f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~ 271 (681)
+++|+||+.. .+|| .. ..++++.|+++||++++++++| ++ +++++. +|.+++.+|.+|++|++++
T Consensus 7 ~~~l~v~~~~~~~P~---~~-----~~~g~~~G~~~dl~~~i~~~~g~~~--~~~~~~---~~~~~~~~l~~g~~D~~~~ 73 (246)
T 4eq9_A 7 KKEIIVATNGSPRPF---IY-----EENGELTGYEIEVVRAIFKDSDKYD--VKFEKT---EWSGVFAGLDADRYNMAVN 73 (246)
T ss_dssp CEEEEEEECCCSTTT---SE-----EETTEEESHHHHHHHHHHTTCSSEE--EEEEEC---CHHHHHHHHHTTSCSEECS
T ss_pred CCEEEEEeCCCcCCe---EE-----cCCCCCcccHHHHHHHHHHHcCCce--EEEEeC---CHHHHHHHHhCCCcCEEec
Confidence 3789999984 3444 43 2356899999999999999999 76 666665 7999999999999999998
Q ss_pred eEEEeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCC
Q 005717 272 DTTIVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQH 351 (681)
Q Consensus 272 ~~~it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~ 351 (681)
+++.+++|.+.++||.||+..+.++++++...
T Consensus 74 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~------------------------------------------------ 105 (246)
T 4eq9_A 74 NLSYTKERAEKYLYAAPIAQNPNVLVVKKDDS------------------------------------------------ 105 (246)
T ss_dssp SCCCCHHHHHHEEECCCCEECCEEEEEETTCC------------------------------------------------
T ss_pred ccccChhhhhceeeccceecCceEEEEECCCC------------------------------------------------
Confidence 88999999999999999999999999986322
Q ss_pred chhhHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecCh
Q 005717 352 QIGTIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNS 431 (681)
Q Consensus 352 ~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s 431 (681)
++++++||. |++||+..|+
T Consensus 106 -----------------------------------------------------------~i~~~~dL~--g~~i~~~~g~ 124 (246)
T 4eq9_A 106 -----------------------------------------------------------SIKSLDDIG--GKSTEVVQAT 124 (246)
T ss_dssp -----------------------------------------------------------SCSSGGGCT--TCEEEECTTC
T ss_pred -----------------------------------------------------------CCCCHHHhC--CCEEEEecCc
Confidence 478899998 8899999999
Q ss_pred hHHHHHhhhc-CCcc--cccc-ccCChhHHHHHHccCcceEEecchhhHHHHHhhcC-CceEEECcccccCC-cEEEecC
Q 005717 432 FVKDLLTKKL-NFNE--TRLK-NYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYC-SRYMMVGPTYRTDG-FGFAFPL 505 (681)
Q Consensus 432 ~~~~~l~~~~-~~~~--~~~~-~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c-~~l~~v~~~~~~~~-~~~~~~k 505 (681)
....++.+.. ..+. ..+. ...+.++++++|.+|++|+++.+...+.+++++.. .++.++.......+ ++++++|
T Consensus 125 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 204 (246)
T 4eq9_A 125 TSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQFDYKIFDKIGVETVIKNQGLDNLKVIELPSDQQPYVYPLLAQ 204 (246)
T ss_dssp HHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHHTCTTEEEEECCCSSCCEECCEEET
T ss_pred cHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcCCceEEEecHHHHHHHHHhCCCCCceEecCcCCCCCcEEEEEcC
Confidence 8888873310 1222 2333 23588999999999999999999999999888763 46888877666665 8999999
Q ss_pred CCC-ChHHHHHHHHhhccCccHHHHHHHHHcCCC
Q 005717 506 GSP-LVPYISRAILKVTEDKEKMENIEKALGNQA 538 (681)
Q Consensus 506 ~sp-l~~~in~~Il~l~e~~G~l~~i~~kw~~~~ 538 (681)
++| +++.||++|.++.++ |.+++|.+||+...
T Consensus 205 ~~~~l~~~ln~~l~~l~~~-g~~~~i~~k~~~~~ 237 (246)
T 4eq9_A 205 GQDELKSFVDKRIKELYKD-GTLEKLSKQFFGDT 237 (246)
T ss_dssp TCHHHHHHHHHHHHHHHHT-THHHHHHHHHHSSC
T ss_pred CCHHHHHHHHHHHHHHHhC-CcHHHHHHHhcCCC
Confidence 998 999999999999999 99999999999763
No 24
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.85 E-value=6.2e-21 Score=194.30 Aligned_cols=219 Identities=17% Similarity=0.308 Sum_probs=185.8
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++||||+... |+||.+. +.++++.|+++||++++++++|+ ++++++. .+|.+++.+|.+|++|++. +++
T Consensus 32 ~~l~v~~~~~--~~P~~~~----~~~g~~~G~~~dl~~~i~~~lg~--~~~~~~~--~~~~~~~~~l~~G~~D~~~-~~~ 100 (267)
T 3mpk_A 32 PVVKVAVLNL--FAPFTLF----RTDEQFGGISAAVLQLLQLRTGL--DFEIIGV--DTVEELIAKLRSGEADMAG-ALF 100 (267)
T ss_dssp SEEEEEEETE--ETTTEEC----CTTCCCBSHHHHHHHHHHHHHCC--EEEEEEE--SSHHHHHHHHHHTSCSEEE-EEE
T ss_pred CcEEEEeCCC--CCCeEEE----CCCCcEeeeHHHHHHHHHHHHCC--eEEEEec--CCHHHHHHHHHCCCccEEe-ccc
Confidence 6899999763 4455543 45778999999999999999995 4777765 4799999999999999976 789
Q ss_pred EeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCchh
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQIG 354 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~ 354 (681)
.+++|.+.+.||.||+..+.++++++...
T Consensus 101 ~t~~r~~~~~fs~p~~~~~~~l~~~~~~~--------------------------------------------------- 129 (267)
T 3mpk_A 101 VNSARESFLSFSRPYVRNGMVIVTRQDPD--------------------------------------------------- 129 (267)
T ss_dssp CCGGGTTTEEECSCSEEECEEEEEESSTT---------------------------------------------------
T ss_pred CChhhhcceEechhhccCceEEEEECCCC---------------------------------------------------
Confidence 99999999999999999999999986532
Q ss_pred hHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecChhHH
Q 005717 355 TIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNSFVK 434 (681)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s~~~ 434 (681)
.+++++||. |.+||+..|+...
T Consensus 130 --------------------------------------------------------~i~~~~dL~--g~~i~v~~g~~~~ 151 (267)
T 3mpk_A 130 --------------------------------------------------------APVDADHLD--GRTVALVRNSAAI 151 (267)
T ss_dssp --------------------------------------------------------SCSSGGGCT--TCEEEEETTCTHH
T ss_pred --------------------------------------------------------CCCCHHHHC--CCEEEEeCCchhH
Confidence 478899998 8999999999988
Q ss_pred HHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhc-CCceEEECccc-ccCCcEEEecCCCC-ChH
Q 005717 435 DLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASY-CSRYMMVGPTY-RTDGFGFAFPLGSP-LVP 511 (681)
Q Consensus 435 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~-c~~l~~v~~~~-~~~~~~~~~~k~sp-l~~ 511 (681)
.++.+ .++..+++.+++.++++++|.+|++|+++.+...+.+++++. ..++.+++... ...+++++++|++| +.+
T Consensus 152 ~~l~~--~~~~~~~~~~~~~~~~l~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~~~~l~~ 229 (267)
T 3mpk_A 152 PLLQR--RYPQAKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTRGQTELMS 229 (267)
T ss_dssp HHHHH--HCTTSEEEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEEEEEETTCHHHHH
T ss_pred HHHHH--hCCCcEEEEeCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhcCCCceEEEeccCCCceeEEEEEcCCCHHHHH
Confidence 88833 345667888999999999999999999999999999988874 33687776533 46778999999999 999
Q ss_pred HHHHHHHhhccCccHHHHHHHHHcCC
Q 005717 512 YISRAILKVTEDKEKMENIEKALGNQ 537 (681)
Q Consensus 512 ~in~~Il~l~e~~G~l~~i~~kw~~~ 537 (681)
.||++|.++.++ | +++|.+||+..
T Consensus 230 ~ln~~l~~l~~~-~-~~~i~~kw~~~ 253 (267)
T 3mpk_A 230 ILNKALYSISND-E-LASIISRWRGS 253 (267)
T ss_dssp HHHHHHHTSCHH-H-HHHHHHTTC--
T ss_pred HHHHHHHhCCHH-H-HHHHHHhhccC
Confidence 999999999999 7 99999999964
No 25
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.85 E-value=1.4e-20 Score=185.32 Aligned_cols=219 Identities=22% Similarity=0.406 Sum_probs=185.0
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++|+||+.. .++||... + ++++.|+++|+++++++++|++ ++++.. +|.+++.+|.+|++|+++++++
T Consensus 3 ~~l~v~~~~--~~~P~~~~----~-~g~~~G~~~dl~~~~~~~~g~~--~~~~~~---~~~~~~~~l~~g~~D~~~~~~~ 70 (226)
T 1wdn_A 3 KKLVVATDT--AFVPFEFK----Q-GDLYVGFDVDLWAAIAKELKLD--YELKPM---DFSGIIPALQTKNVDLALAGIT 70 (226)
T ss_dssp -CEEEEEES--SBTTTBEE----E-TTEEESHHHHHHHHHHHHHTCC--EEEEEE---CGGGHHHHHHTTSSSEEEEEEE
T ss_pred ceEEEEECC--CCCCeeEe----c-CCcEEEeeHHHHHHHHHHhCCE--EEEEEC---CHHHHHHHHhCCCCCEEEEcCc
Confidence 469999973 33444443 2 3689999999999999999955 666665 7999999999999999998888
Q ss_pred EeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCchh
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQIG 354 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~ 354 (681)
.+++|.+.++|+.||+..+.++++++...
T Consensus 71 ~~~~r~~~~~~~~p~~~~~~~~~~~~~~~--------------------------------------------------- 99 (226)
T 1wdn_A 71 ITDERKKAIDFSDGYYKSGLLVMVKANNN--------------------------------------------------- 99 (226)
T ss_dssp CCHHHHTTSEECSCCEEEEEEEEEETTCC---------------------------------------------------
T ss_pred CCHHHhCccccccchhcCceEEEEeCCCC---------------------------------------------------
Confidence 99999999999999999999999986532
Q ss_pred hHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecChhHH
Q 005717 355 TIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNSFVK 434 (681)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s~~~ 434 (681)
.+++++||. |++||+..|+...
T Consensus 100 --------------------------------------------------------~i~~~~dL~--g~~i~~~~g~~~~ 121 (226)
T 1wdn_A 100 --------------------------------------------------------DVKSVKDLD--GKVVAVKSGTGSV 121 (226)
T ss_dssp --------------------------------------------------------SCSSSTTTT--TCEEEEETTSHHH
T ss_pred --------------------------------------------------------CCCCHHHhC--CCEEEEEcCCcHH
Confidence 378889997 8899999999988
Q ss_pred HHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcC-CceEEECcccccCCcEEEecCCCC-ChHH
Q 005717 435 DLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYC-SRYMMVGPTYRTDGFGFAFPLGSP-LVPY 512 (681)
Q Consensus 435 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c-~~l~~v~~~~~~~~~~~~~~k~sp-l~~~ 512 (681)
.++.+. ++..++..+.+.++..++|.+|++|+++.+...+.+++++.. .++.+++..+....++++++|++| +.+.
T Consensus 122 ~~l~~~--~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~l~~~ 199 (226)
T 1wdn_A 122 DYAKAN--IKTKDLRQFPNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDK 199 (226)
T ss_dssp HHHHHH--CCCSEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEECTTCHHHHHH
T ss_pred HHHHHh--CCCceEEEeCCHHHHHHHHHcCCcCEEEeCcHHHHHHHHhCCCCceEEecCCcccCceEEEEeCCCHHHHHH
Confidence 888332 344567788899999999999999999999999988888762 368888777777789999999986 9999
Q ss_pred HHHHHHhhccCccHHHHHHHHHcCC
Q 005717 513 ISRAILKVTEDKEKMENIEKALGNQ 537 (681)
Q Consensus 513 in~~Il~l~e~~G~l~~i~~kw~~~ 537 (681)
+|++|.++.++ |.+++|.+||+..
T Consensus 200 ~~~~l~~l~~~-g~~~~i~~k~~~~ 223 (226)
T 1wdn_A 200 VNGALKTLREN-GTYNEIYKKWFGT 223 (226)
T ss_dssp HHHHHHHHHHT-SHHHHHHHHHHSS
T ss_pred HHHHHHHHHhC-ChHHHHHHHHcCC
Confidence 99999999999 9999999999964
No 26
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.85 E-value=8.1e-21 Score=189.29 Aligned_cols=222 Identities=15% Similarity=0.283 Sum_probs=181.3
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++||||+.. .|+||... +.++++.|+++|+++++++++|+ +++++.. +|.+++.+|.+|++|+++++++
T Consensus 4 ~~l~v~~~~--~~~P~~~~----~~~g~~~G~~~dl~~~i~~~~g~--~~~~~~~---~~~~~~~~l~~g~~D~~~~~~~ 72 (239)
T 1lst_A 4 QTVRIGTDT--TYAPFSSK----DAKGEFIGFDIDLGNEMCKRMQV--KCTWVAS---DFDALIPSLKAKKIDAIISSLS 72 (239)
T ss_dssp SEEEEEECS--CBTTTBEE----CTTCCEESHHHHHHHHHHHHHTC--EEEEEEC---CGGGHHHHHHTTSCSEECSSCB
T ss_pred ceEEEEECC--CcCCeeEE----CCCCCEeeEHHHHHHHHHHHHCC--eEEEEeC---CHHHHHHHHhCCCCCEEEECcC
Confidence 579999843 33444443 55678999999999999999995 4777775 8999999999999999988888
Q ss_pred EeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCchh
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQIG 354 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~ 354 (681)
.+++|.+.++||.||+..+.++++++...
T Consensus 73 ~t~~r~~~~~~s~p~~~~~~~l~~~~~~~--------------------------------------------------- 101 (239)
T 1lst_A 73 ITDKRQQEIAFSDKLYAADSRLIAAKGSP--------------------------------------------------- 101 (239)
T ss_dssp CCHHHHHHCEECSCSBCCCEEEEEETTCC---------------------------------------------------
T ss_pred cCHHHhhceeecccceeCceEEEEeCCCC---------------------------------------------------
Confidence 99999999999999999999999986542
Q ss_pred hHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecChhHH
Q 005717 355 TIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNSFVK 434 (681)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s~~~ 434 (681)
...+++||. |++||+..|+...
T Consensus 102 --------------------------------------------------------~~~~~~dL~--g~~v~~~~g~~~~ 123 (239)
T 1lst_A 102 --------------------------------------------------------IQPTLESLK--GKHVGVLQGSTQE 123 (239)
T ss_dssp --------------------------------------------------------CCSSHHHHT--TCEEEEETTSHHH
T ss_pred --------------------------------------------------------CCCCHHHhC--CCEEEEEcCccHH
Confidence 124899997 8899999999988
Q ss_pred HHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHH-HHhhc-CCceEEECccccc-----CCcEEEecCCC
Q 005717 435 DLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKI-FLASY-CSRYMMVGPTYRT-----DGFGFAFPLGS 507 (681)
Q Consensus 435 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~-~~~~~-c~~l~~v~~~~~~-----~~~~~~~~k~s 507 (681)
.++.+...-+..++..+.+.++++++|.+|++|+++.+...+.+ ++.+. ..++.+++..+.. .+++++++|++
T Consensus 124 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~ 203 (239)
T 1lst_A 124 AYANDNWRTKGVDVVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKDD 203 (239)
T ss_dssp HHHHHHTGGGTCEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCEECTTC
T ss_pred HHHHHhcccCCCeEEEcCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHhccCCCceEEeccccccccccCcceEEEEeCCC
Confidence 88833221123467788899999999999999999999887754 44443 2367777765543 37899999999
Q ss_pred C-ChHHHHHHHHhhccCccHHHHHHHHHcCC
Q 005717 508 P-LVPYISRAILKVTEDKEKMENIEKALGNQ 537 (681)
Q Consensus 508 p-l~~~in~~Il~l~e~~G~l~~i~~kw~~~ 537 (681)
| +.+.+|++|.++.++ |.+++|.+||+..
T Consensus 204 ~~l~~~~~~~l~~l~~~-G~~~~i~~k~~~~ 233 (239)
T 1lst_A 204 TELKAAFDKALTELRQD-GTYDKMAKKYFDF 233 (239)
T ss_dssp HHHHHHHHHHHHHHHHT-THHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHC-ccHHHHHHHHcCC
Confidence 8 999999999999999 9999999999975
No 27
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.84 E-value=3e-20 Score=183.76 Aligned_cols=217 Identities=20% Similarity=0.345 Sum_probs=184.2
Q ss_pred CceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeE
Q 005717 194 PRKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDT 273 (681)
Q Consensus 194 p~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~ 273 (681)
.++||||+.. .++||... +.++++.|+++|+++++++++|+ +++++.. +|.+++.+|.+|++|++++++
T Consensus 5 a~~l~v~~~~--~~~P~~~~----~~~g~~~G~~~dl~~~i~~~~g~--~~~~~~~---~~~~~~~~l~~g~~D~~~~~~ 73 (229)
T 2y7i_A 5 ARTLHFGTSA--TYAPYEFV----DADNKIVGFDIDVANAVCKEMQA--ECSFTNQ---SFDSLIPSLRFKKFDAVIAGM 73 (229)
T ss_dssp CCEEEEEECC--CBTTTBEE----CTTSCEESHHHHHHHHHHHHTTC--EEEEEEC---CGGGHHHHHHTTSCSEECSSC
T ss_pred CCcEEEEeCC--CcCCceEE----CCCCCCcceeHHHHHHHHHHhCC--eEEEEEc---CHHHHHHHHhCCCceEEEecC
Confidence 3689999963 33444443 45678999999999999999995 4677776 799999999999999998778
Q ss_pred EEeeccccccccccceeec-ceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCc
Q 005717 274 TIVANRSTFVDFTLPYSES-GVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQ 352 (681)
Q Consensus 274 ~it~~R~~~vdFT~P~~~~-~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~ 352 (681)
..+++|.+.+.|+.||+.. ..++++++..
T Consensus 74 ~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~-------------------------------------------------- 103 (229)
T 2y7i_A 74 DMTPKREQQVSFSQPYYEGLSAVVVTRKGA-------------------------------------------------- 103 (229)
T ss_dssp BCCHHHHTTSEECSCSBCCCCEEEEEETTS--------------------------------------------------
T ss_pred ccCHHHhcceeeccccccCCcEEEEEeCCC--------------------------------------------------
Confidence 8999999999999999999 9999887542
Q ss_pred hhhHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecChh
Q 005717 353 IGTIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNSF 432 (681)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s~ 432 (681)
+++++||. |.+||+..|+.
T Consensus 104 -----------------------------------------------------------~~~~~dL~--g~~v~~~~g~~ 122 (229)
T 2y7i_A 104 -----------------------------------------------------------YHTFADLK--GKKVGLENGTT 122 (229)
T ss_dssp -----------------------------------------------------------CCSTGGGT--TCEEEEETTSH
T ss_pred -----------------------------------------------------------CCCHHHHC--CCEEEEecCCc
Confidence 56788997 88999999999
Q ss_pred HHHHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcCCceEEECcccc-----cCCcEEEecCCC
Q 005717 433 VKDLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSRYMMVGPTYR-----TDGFGFAFPLGS 507 (681)
Q Consensus 433 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~l~~v~~~~~-----~~~~~~~~~k~s 507 (681)
...++.+. ++..++..+.+.++++++|.+|++|+++.+...+.+++++.. ++.+++..+. ..+++++++|++
T Consensus 123 ~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (229)
T 2y7i_A 123 HQRYLQDK--QQAITPVAYDSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNP-DYAIMDERASDPDYYGKGLGIAVRKDN 199 (229)
T ss_dssp HHHHHHHH--CTTSEEEEESCHHHHHHHHHTTSCSEEEEEHHHHHHHHTTCT-TEEECSCCBCCTTTSCCCBCCEECTTC
T ss_pred HHHHHHHh--CCCCeEEecCCHHHHHHHHHcCCcCEEEechHHHHHHHHhCC-CeEEeccccccccccccceEEEEeCCC
Confidence 88888332 344577788999999999999999999999999999988877 7888876553 247899999999
Q ss_pred C-ChHHHHHHHHhhccCccHHHHHHHHHcC
Q 005717 508 P-LVPYISRAILKVTEDKEKMENIEKALGN 536 (681)
Q Consensus 508 p-l~~~in~~Il~l~e~~G~l~~i~~kw~~ 536 (681)
| +++.+|++|.++.++ |.+++|.+||+.
T Consensus 200 ~~l~~~l~~~l~~l~~~-g~~~~i~~k~~~ 228 (229)
T 2y7i_A 200 DALLQEINAALDKVKAS-PEYAQMQEKWFT 228 (229)
T ss_dssp HHHHHHHHHHHHHHHTS-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhC-ChHHHHHHHHcC
Confidence 8 999999999999999 999999999985
No 28
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.84 E-value=2.1e-20 Score=188.71 Aligned_cols=222 Identities=14% Similarity=0.157 Sum_probs=186.3
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++||||+...+| |.+. +.++++.|+++|+++++++++|++ .++++.. .|.+++.++.+|++|+++++++
T Consensus 13 ~~l~v~~~~~~P---~~~~----~~~g~~~G~~~dl~~~i~~~~g~~-~~~~~~~---~~~~~~~~l~~g~~D~~~~~~~ 81 (257)
T 2q88_A 13 GFARIAIANEPP---FTAV----GADGKVSGAAPDVAREIFKRLGVA-DVVASIS---EYGAMIPGLQAGRHDAITAGLF 81 (257)
T ss_dssp TEEEEEECCCTT---TCEE----CTTCCEESHHHHHHHHHHHHTTCC-EEEEEEC---CGGGHHHHHHTTSCSEECSCCB
T ss_pred CeEEEEcCCCCC---eeEE----CCCCCcccccHHHHHHHHHHcCCC-eeeEEeC---CHHHHHHHHHCCCcCEEEeccc
Confidence 689999975444 4443 456789999999999999999954 2677776 7999999999999999987788
Q ss_pred EeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCchh
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQIG 354 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~ 354 (681)
.+++|.+.++||.||+..+.++++++....
T Consensus 82 ~t~~r~~~~~~s~p~~~~~~~~~~~~~~~~-------------------------------------------------- 111 (257)
T 2q88_A 82 MKPERCAAVAYSQPILCDAEAFALKKGNPL-------------------------------------------------- 111 (257)
T ss_dssp CCHHHHTTSEECSCCCEECEEEEEETTCTT--------------------------------------------------
T ss_pred CCHHHHhccccccchhcCceEEEEECCCcc--------------------------------------------------
Confidence 999999999999999999999999866421
Q ss_pred hHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhC-CCeEEEecChhH
Q 005717 355 TIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKN-GYFVGYQTNSFV 433 (681)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~-~~~vg~~~~s~~ 433 (681)
.+++++||..+ |++||+..|+..
T Consensus 112 --------------------------------------------------------~i~~~~dL~~~~g~~i~~~~g~~~ 135 (257)
T 2q88_A 112 --------------------------------------------------------GLKSYKDIADNPDAKIGAPGGGTE 135 (257)
T ss_dssp --------------------------------------------------------CCCBHHHHHHCTTCCEEECTTSHH
T ss_pred --------------------------------------------------------CCCCHHHHhccCCceEEEECCccc
Confidence 48899999866 778999999998
Q ss_pred HHHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcC-CceEEECcccc--cCCcEEEecCCCC-C
Q 005717 434 KDLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYC-SRYMMVGPTYR--TDGFGFAFPLGSP-L 509 (681)
Q Consensus 434 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c-~~l~~v~~~~~--~~~~~~~~~k~sp-l 509 (681)
..++ ++.+++..++..+.+.++++++|.+|++|+++.+...+.+++++.. ..+..+.+... ..+++++++|+++ +
T Consensus 136 ~~~l-~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l 214 (257)
T 2q88_A 136 EKLA-LEAGVPRDRVIVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRKGDEAL 214 (257)
T ss_dssp HHHH-HHTTCCGGGEEECSSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEEBCCEECGGGHHH
T ss_pred HHHH-HhcCCCCceEEEcCCHHHHHHHHHcCCCcEEEcCHHHHHHHHHhCCCcceeeecccCCccccceEEEEcCCCHHH
Confidence 8888 5556666678889999999999999999999999999999888763 35666554211 2457889999977 9
Q ss_pred hHHHHHHHHhhccCccHHHHHHHHHc
Q 005717 510 VPYISRAILKVTEDKEKMENIEKALG 535 (681)
Q Consensus 510 ~~~in~~Il~l~e~~G~l~~i~~kw~ 535 (681)
.+.||++|.++.++ |.+++|.+||.
T Consensus 215 ~~~l~~~l~~~~~~-g~~~~i~~k~~ 239 (257)
T 2q88_A 215 RDAFDVELAKLKES-GEFAKIIEPYG 239 (257)
T ss_dssp HHHHHHHHHHHHHH-THHHHHHGGGT
T ss_pred HHHHHHHHHHHHhC-CcHHHHHHHhC
Confidence 99999999999999 99999999994
No 29
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=99.84 E-value=1.5e-20 Score=202.63 Aligned_cols=166 Identities=16% Similarity=0.260 Sum_probs=131.9
Q ss_pred CCCCCeEEEecCCccccCCccccccCccceEEEEEecCCChhHHHHHHHHHhh--cCCCCCCCCCCchhHHHHHHHHHHH
Q 005717 1 MMSEGYAWIATQGLSTLLDPVKDMESMQGVLGLRPYIPSSKKLEHFKLRWIKS--ADKPDGSTGGSNLFGLWAYDTVWAI 78 (681)
Q Consensus 1 mm~~~y~WI~t~~~~~~~~~~~~~~~~~Gvlg~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~~~~~~~~~~aYDav~~l 78 (681)
|++++|+||+++......+..++...+.|++|++++.++++.+++|.++|+++ .++|+.....++.|++++||||+++
T Consensus 210 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~ 289 (389)
T 3o21_A 210 KHSRGYHYMLANLGFTDILLERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVI 289 (389)
T ss_dssp SCSTTCEEEECCTTGGGCCCHHHHHTTCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHH
T ss_pred cccCCeEEEEccCCcccccHHHHhcCCcceEEEEEecCCChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHH
Confidence 56789999999843333333344557789999999999999999999999876 3344433335678999999999999
Q ss_pred HHHHHHHcccCCcccccCCCCCCCcc--cccCCCcchHHHHHHHhccceecceeeEEE-eCCcccCccEEEEEeeeCCee
Q 005717 79 AMAVERAGIENSSFLKSNTSKSRVDI--AALGTFEMGAKLLDTLINTTFEGLSGNFHL-VNGQLEPSAFEIFNVIGTSER 155 (681)
Q Consensus 79 A~Al~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~G~~l~~~l~~~~f~GltG~i~F-~~G~~~~~~~~I~n~~~~~~~ 155 (681)
|+|++++...+..... .....+| +...+|.+|..|+++|++++|+|+||+|+| ++|++.+..|+|+|+.+++++
T Consensus 290 a~Al~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~~ 366 (389)
T 3o21_A 290 AEAFRYLRRQRVDVSR---RGSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSR 366 (389)
T ss_dssp HHHHHHHHHTTCCCC--------CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEE
T ss_pred HHHHHHHHhhCccccc---CCCCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCCce
Confidence 9999999754432211 1123456 445679999999999999999999999999 899999899999999999999
Q ss_pred EeeeeeCCCCcccc
Q 005717 156 VIGYWTKEKELLSE 169 (681)
Q Consensus 156 ~vG~W~~~~gl~~~ 169 (681)
+||+|++..|+...
T Consensus 367 ~VG~w~~~~g~~~~ 380 (389)
T 3o21_A 367 KAGYWNEYERFVPF 380 (389)
T ss_dssp EEEEEETTTEEECC
T ss_pred eeeEEcCCCCcccc
Confidence 99999999998744
No 30
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.84 E-value=3.7e-20 Score=182.66 Aligned_cols=220 Identities=20% Similarity=0.365 Sum_probs=181.6
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++|+||+...+|| .. ..++++.|+++|+++++++++|++ ++++.. .+|.+++.+|.+|++|+++++++
T Consensus 3 ~~l~v~~~~~~P~---~~-----~~~g~~~G~~~dl~~~~~~~~g~~--~~~~~~--~~~~~~~~~l~~g~~D~~~~~~~ 70 (228)
T 2pyy_A 3 QPLLVATRVIPPF---VL-----SNKGELSGFSIDLWRSIATQIGIE--SKLIEY--SSVPELISAIKDNKVNLGIAAIS 70 (228)
T ss_dssp -CEEEEECCBTTT---BB-----CC---CBSHHHHHHHHHHHHHTCC--EEEEEC--SSHHHHHHHHHTTSCSEECSSCB
T ss_pred ceEEEEecCCCCe---EE-----ecCCceEEEeHHHHHHHHHHhCCc--EEEEEc--CCHHHHHHHHHCCCcCEEEeccc
Confidence 5799999865554 33 234678999999999999999965 666665 47999999999999999988888
Q ss_pred EeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCchh
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQIG 354 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~ 354 (681)
.+++|.+.+.|+.||+..+.++++++.....
T Consensus 71 ~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~------------------------------------------------- 101 (228)
T 2pyy_A 71 ITAEREQNFDFSLPIFASGLQIMVRNLESGT------------------------------------------------- 101 (228)
T ss_dssp CCHHHHHHSEECSCSEEEEEEEEEEC------------------------------------------------------
T ss_pred cCHHHHccceecccchhcceEEEEECCcccc-------------------------------------------------
Confidence 8999999999999999999999998764210
Q ss_pred hHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecChhHH
Q 005717 355 TIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNSFVK 434 (681)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s~~~ 434 (681)
..+++++||. |.+||+..|+...
T Consensus 102 -------------------------------------------------------~~~~~~~dL~--g~~i~~~~g~~~~ 124 (228)
T 2pyy_A 102 -------------------------------------------------------GDIRSIDDLP--GKVVATTAGSTAA 124 (228)
T ss_dssp -------------------------------------------------------CCCCSGGGCT--TCEEEEETTSHHH
T ss_pred -------------------------------------------------------CCcCCHHHcC--CCeEEEEcCcHHH
Confidence 1588999997 8899999999988
Q ss_pred HHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcC-CceEEECcccccCCcEEEecCCCCChHHH
Q 005717 435 DLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYC-SRYMMVGPTYRTDGFGFAFPLGSPLVPYI 513 (681)
Q Consensus 435 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c-~~l~~v~~~~~~~~~~~~~~k~spl~~~i 513 (681)
.++ ++.+. ++..+.+.+++.++|.+|++|+++.+...+.+++++.. ..+.+++..+...+++++++|++++...+
T Consensus 125 ~~l-~~~~~---~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 200 (228)
T 2pyy_A 125 TYL-REHHI---SVLEVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPYRKPI 200 (228)
T ss_dssp HHH-HHTTC---EEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECCEECTTCTTHHHH
T ss_pred HHH-HHcCC---ceEecCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEecccccceeEEEEEeCChHHHHHH
Confidence 888 44333 56778899999999999999999999988888887762 26887777777778999999999999999
Q ss_pred HHHHHhhccCccHHHHHHHHHcCC
Q 005717 514 SRAILKVTEDKEKMENIEKALGNQ 537 (681)
Q Consensus 514 n~~Il~l~e~~G~l~~i~~kw~~~ 537 (681)
|++|.++.++ |.++++.+||+..
T Consensus 201 ~~~l~~l~~~-g~~~~i~~k~~~~ 223 (228)
T 2pyy_A 201 NQALLNLKEN-GTYQSLYDKWFDP 223 (228)
T ss_dssp HHHHHHHHHT-THHHHHHHHHHCC
T ss_pred HHHHHHHHhC-CcHHHHHHHHcCC
Confidence 9999999999 9999999999964
No 31
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.83 E-value=1.8e-20 Score=191.22 Aligned_cols=217 Identities=14% Similarity=0.238 Sum_probs=179.7
Q ss_pred ceEEEEeeccCCccceEEEeecCCCC---eeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKT---TQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVG 271 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~---~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~ 271 (681)
++|+|++.. .|+||.+. +.+ +++.|+++|+++++++++|+ +++++.. +|.+++.+|.+|++|++++
T Consensus 21 ~~l~v~~~~--~~pP~~~~----~~~~~~g~~~G~~~dl~~~i~~~~g~--~v~~~~~---~~~~~~~~l~~G~~D~~~~ 89 (271)
T 2iee_A 21 GKIVVATSG--TLYPTSYH----DTDSGSDKLTGYEVEVVREAAKRLGL--KVEFKEM---GIDGMLTAVNSGQVDAAAN 89 (271)
T ss_dssp TEEEEEECS--CBTTTBEE----ETTTTCCEEECHHHHHHHHHHHHTTC--EEEEEEC---CSTTHHHHHHHTSSSEECS
T ss_pred CeEEEEECC--CCCCeeEe----CCCCCCCCceeeHHHHHHHHHHHcCC--eEEEEEC---CHHHHHHHHHCCCcCEEEe
Confidence 689999972 33444443 233 78999999999999999995 4777776 7999999999999999988
Q ss_pred eEEEeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCC
Q 005717 272 DTTIVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQH 351 (681)
Q Consensus 272 ~~~it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~ 351 (681)
+++.+++|.+.++||.||+..+.++++++....
T Consensus 90 ~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~~----------------------------------------------- 122 (271)
T 2iee_A 90 DIDVTKDREEKFAFSTPYKYSYGTAIVRKDDLS----------------------------------------------- 122 (271)
T ss_dssp SCBCCHHHHTTEEECCCSEEEEEEEEECTTTGG-----------------------------------------------
T ss_pred CCcCChhhccceEEeecceeCCeEEEEECCCCC-----------------------------------------------
Confidence 888999999999999999999999999765321
Q ss_pred chhhHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecCh
Q 005717 352 QIGTIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNS 431 (681)
Q Consensus 352 ~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s 431 (681)
.+++++||. |++||+..|+
T Consensus 123 -----------------------------------------------------------~i~~~~dL~--g~~i~v~~g~ 141 (271)
T 2iee_A 123 -----------------------------------------------------------GIKTLKDLK--GKKAAGAATT 141 (271)
T ss_dssp -----------------------------------------------------------GCSSGGGGT--TCEEESCTTS
T ss_pred -----------------------------------------------------------CCCCHHHhC--CCEEEEeCCc
Confidence 378899997 8899999999
Q ss_pred hHHHHHhhhcCCccccccccCChhHH--HHHHccCcceEEecchhhHHHHHh-hc-CCceEEE-CcccccCCcEEEecCC
Q 005717 432 FVKDLLTKKLNFNETRLKNYTTSEDY--HDALSNGEVAAIFDEIPYIKIFLA-SY-CSRYMMV-GPTYRTDGFGFAFPLG 506 (681)
Q Consensus 432 ~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~l~~g~~~a~i~e~~~~~~~~~-~~-c~~l~~v-~~~~~~~~~~~~~~k~ 506 (681)
....++ +..+. ++..+.+.++. +++|.+|++| ++.+...+.+++. +. ..++.++ +..+...+++++++|+
T Consensus 142 ~~~~~l-~~~~~---~~~~~~~~~~~~l~~~L~~GrvD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 216 (271)
T 2iee_A 142 VYMEVA-RKYGA---KEVIYDNATNEQYLKDVANGRTD-VILNDYYLQTLALAAFPDLNITIHPDIKYMPNKQALVMKKS 216 (271)
T ss_dssp HHHHHH-HHTTC---EEEECSSCCHHHHHHHHHHTSSC-EEEEEHHHHHHHHHHCTTSSCEECSSCCEEEEEECCEEETT
T ss_pred cHHHHH-HHcCC---ceEEeCChhhHHHHHHHHcCCcc-EEeccHHHHHHHHHhCCCCceEEecCCCcccceEEEEEcCC
Confidence 988888 44333 67788888888 9999999999 6655555555554 44 3367877 6677778899999999
Q ss_pred CC-ChHHHHHHHHhhccCccHHHHHHHHHcC
Q 005717 507 SP-LVPYISRAILKVTEDKEKMENIEKALGN 536 (681)
Q Consensus 507 sp-l~~~in~~Il~l~e~~G~l~~i~~kw~~ 536 (681)
+| ++..||++|.++.++ |.+++|.+||+.
T Consensus 217 ~~~l~~~ln~al~~l~~~-G~~~~i~~k~~~ 246 (271)
T 2iee_A 217 NAALQKKMNEALKEMSKD-GSLTKLSKQFFN 246 (271)
T ss_dssp CHHHHHHHHHHHHHHHHH-THHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHC-CCHHHHHHHhCC
Confidence 88 999999999999999 999999999998
No 32
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=99.83 E-value=3.1e-20 Score=199.09 Aligned_cols=165 Identities=21% Similarity=0.264 Sum_probs=132.6
Q ss_pred CCCCCeEEEecCCccccCCccccccCccceEEEEEecCCChhHHHHHHHHHhh--cCCCCCCCCCCchhHHHHHHHHHHH
Q 005717 1 MMSEGYAWIATQGLSTLLDPVKDMESMQGVLGLRPYIPSSKKLEHFKLRWIKS--ADKPDGSTGGSNLFGLWAYDTVWAI 78 (681)
Q Consensus 1 mm~~~y~WI~t~~~~~~~~~~~~~~~~~Gvlg~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~~~~~~~~~~aYDav~~l 78 (681)
|++++|+||++++.....+..+......+++|++++.++++..++|.++|+++ .++++.....++.|++++||||+++
T Consensus 204 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~l 283 (376)
T 3hsy_A 204 KHVKGYHYIIANLGFTDGDLLKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVM 283 (376)
T ss_dssp SSGGGCEEEECSSBTTSTTGGGSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHH
T ss_pred cCCCCcEEEEcCCCccccchHHhhcCCcCceEEEEecCCchHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHH
Confidence 56688999999974443332234445566999999999999999999999976 3444433335788999999999999
Q ss_pred HHHHHHHcccCCcccccCCCCCCCcc--cccCCCcchHHHHHHHhccceecceeeEEE-eCCcccCccEEEEEeeeCCee
Q 005717 79 AMAVERAGIENSSFLKSNTSKSRVDI--AALGTFEMGAKLLDTLINTTFEGLSGNFHL-VNGQLEPSAFEIFNVIGTSER 155 (681)
Q Consensus 79 A~Al~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~G~~l~~~l~~~~f~GltG~i~F-~~G~~~~~~~~I~n~~~~~~~ 155 (681)
|+|++++...+..... ......| +...+|.+|..|+++|++++|+|+||+|+| ++|++.+..|+|+|+++++++
T Consensus 284 a~Ai~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~ 360 (376)
T 3hsy_A 284 TEAFRNLRKQRIEISR---RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPR 360 (376)
T ss_dssp HHHHHHHHHTTCCCSC---CCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEEE
T ss_pred HHHHHHHHhcCCcccc---CCCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecCCCce
Confidence 9999998765432221 1123467 666789999999999999999999999999 799999999999999999999
Q ss_pred EeeeeeCCCCccc
Q 005717 156 VIGYWTKEKELLS 168 (681)
Q Consensus 156 ~vG~W~~~~gl~~ 168 (681)
+||+|++..|+..
T Consensus 361 ~VG~w~~~~g~~~ 373 (376)
T 3hsy_A 361 KIGYWSEVDKMVV 373 (376)
T ss_dssp EEEEEETTTEEEE
T ss_pred EEEEEcCCCCcee
Confidence 9999999999874
No 33
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.82 E-value=1.7e-19 Score=182.88 Aligned_cols=217 Identities=18% Similarity=0.249 Sum_probs=188.3
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++++|++... ++||... +.++++.|+++|+++++++++|+ +++++.. +|.+++.++.+|++|+++++++
T Consensus 31 ~~l~v~~~~~--~~P~~~~----~~~g~~~G~~~dl~~~i~~~~g~--~~~~~~~---~~~~~~~~l~~g~~D~~~~~~~ 99 (268)
T 3qax_A 31 RIWIVGTNAT--YPPFEYV----DAQGEVVGFDIDLAKAISEKLGK--QLEVREF---AFDALILNLKKHRIDAILAGMS 99 (268)
T ss_dssp CEEEEEECSC--BTTTBEE----CTTSCEESHHHHHHHHHHHHHTC--EEEEEEC---CGGGHHHHHHHTSSSEECSCCB
T ss_pred CeEEEEECCC--CCCceEE----CCCCCEEEEEHHHHHHHHHHhCC--eEEEEec---CHHHHHHHHhCCCccEEeecCc
Confidence 6899998742 3344443 56788999999999999999994 5777776 7999999999999999988889
Q ss_pred Eeecccccccccccee--ecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCc
Q 005717 275 IVANRSTFVDFTLPYS--ESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQ 352 (681)
Q Consensus 275 it~~R~~~vdFT~P~~--~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~ 352 (681)
.+++|.+.++| .||+ ..+.++++++...
T Consensus 100 ~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~~------------------------------------------------- 129 (268)
T 3qax_A 100 ITPSRQKEIAL-LPYYGDEVQELMVVSKRSL------------------------------------------------- 129 (268)
T ss_dssp CCHHHHTTSEE-EEEECCCBCEEEEEEETTS-------------------------------------------------
T ss_pred cCHhHhcceee-ecceecccceEEEEECCCC-------------------------------------------------
Confidence 99999999999 9999 8999999987631
Q ss_pred hhhHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecChh
Q 005717 353 IGTIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNSF 432 (681)
Q Consensus 353 ~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s~ 432 (681)
.+++++||. |++||+..|+.
T Consensus 130 ----------------------------------------------------------~i~~~~dL~--g~~i~~~~g~~ 149 (268)
T 3qax_A 130 ----------------------------------------------------------ETPVLPLTQ--YSSVAVQTGTY 149 (268)
T ss_dssp ----------------------------------------------------------CSCCCCGGG--SSCEEEETTSH
T ss_pred ----------------------------------------------------------CCCCHHHhC--CCEEEEecCcH
Confidence 588899998 88999999999
Q ss_pred HHHHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcCCceEEECcccccCC----cEEEecCCCC
Q 005717 433 VKDLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSRYMMVGPTYRTDG----FGFAFPLGSP 508 (681)
Q Consensus 433 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~l~~v~~~~~~~~----~~~~~~k~sp 508 (681)
...++ .. .+..++..+++.+++.++|.+|++|+++.+...+.++++++. ++.+++..+.... ++++++|++|
T Consensus 150 ~~~~l-~~--~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k~~~ 225 (268)
T 3qax_A 150 QEHYL-LS--QPGICVRSFDSTLEVIMEVRYGKSPVAVLEPSVGRVVLKDFP-NLVATRLELPPECWVLGCGLGVAKDRP 225 (268)
T ss_dssp HHHHH-HT--STTCCEEEESCHHHHHHHHHTTSSSEEEECHHHHHHHGGGCT-TEEEEEEECCGGGCBCCEEEEECTTCH
T ss_pred HHHHH-Hh--CCCceEEecCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCC-CcEEecCccCcccccccEEEEEeCCCH
Confidence 98888 43 455677788999999999999999999999999999988887 5788877777767 9999999998
Q ss_pred -ChHHHHHHHHhhccCccHHHHHHHHHcCC
Q 005717 509 -LVPYISRAILKVTEDKEKMENIEKALGNQ 537 (681)
Q Consensus 509 -l~~~in~~Il~l~e~~G~l~~i~~kw~~~ 537 (681)
+++.+|++|.++.++ |.++++.+||+..
T Consensus 226 ~l~~~l~~~l~~l~~~-g~~~~i~~k~~~~ 254 (268)
T 3qax_A 226 EEIQTIQQAITDLKSE-GVIQSLTKKWQLS 254 (268)
T ss_dssp HHHHHHHHHHHHHHHT-THHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHC-CcHHHHHHHHcCC
Confidence 999999999999999 9999999999975
No 34
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.82 E-value=1.5e-19 Score=183.36 Aligned_cols=222 Identities=21% Similarity=0.306 Sum_probs=186.6
Q ss_pred ceEEEEeec-cCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeE
Q 005717 195 RKLKIGVPV-REGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDT 273 (681)
Q Consensus 195 ~~lrV~v~~-~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~ 273 (681)
++++|++.. .+||...... ++++.+.|+++|+++++++++|+ ++++++. +|.+++.++.+|++|++++++
T Consensus 39 ~~l~v~~~~~~~P~~~~~~~----~~~g~~~G~~~dl~~~~~~~~g~--~~~~~~~---~~~~~~~~l~~g~~D~~~~~~ 109 (269)
T 4i62_A 39 GKLVVALNPDFAPFEYQKVV----DGKNQIVGSDIELAKAIATELGV--ELELSPM---SFDNVLASVQSGKADLAISGV 109 (269)
T ss_dssp TEEEEEECSCBTTTBEEEEE----TTEEEEESHHHHHHHHHHHHHTC--EEEEEEC---CHHHHHHHHHTTSCSEECSSC
T ss_pred CeEEEEecCCCCCceeeccc----CCCCcEeeecHHHHHHHHHHHCC--ceEEEEc---CHHHHHHHHhCCCccEEecCC
Confidence 589999964 3444321103 67789999999999999999995 5777776 899999999999999998888
Q ss_pred EEeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCch
Q 005717 274 TIVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQI 353 (681)
Q Consensus 274 ~it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~ 353 (681)
+.+++|.+.+.|+.||+..+.++++++....
T Consensus 110 ~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~~------------------------------------------------- 140 (269)
T 4i62_A 110 SKTDERSKVFDFSTPYYTAKNKLIVKKSDLA------------------------------------------------- 140 (269)
T ss_dssp BCCHHHHTTEEECSCCEECCEEEEEEGGGTT-------------------------------------------------
T ss_pred cCCHhHhhceecccchhhcceEEEEECCccc-------------------------------------------------
Confidence 9999999999999999999999999876421
Q ss_pred hhHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecChhH
Q 005717 354 GTIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNSFV 433 (681)
Q Consensus 354 ~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s~~ 433 (681)
.|++++||. |++||+..|+..
T Consensus 141 ---------------------------------------------------------~i~~~~dL~--g~~i~~~~g~~~ 161 (269)
T 4i62_A 141 ---------------------------------------------------------TYQSVNDLA--QKKVGAQKGSIQ 161 (269)
T ss_dssp ---------------------------------------------------------TCSSGGGGC---CEEEEETTSHH
T ss_pred ---------------------------------------------------------cccCHHHhC--CCeEEEecCchH
Confidence 588999998 889999999998
Q ss_pred HHHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcCCceEEECcccc---cCCcEEEecCCCC-C
Q 005717 434 KDLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSRYMMVGPTYR---TDGFGFAFPLGSP-L 509 (681)
Q Consensus 434 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~l~~v~~~~~---~~~~~~~~~k~sp-l 509 (681)
..++.+ .++..++..+++.++..++|.+|++|+++.+.+.+.++++++. .+.+....+. ..+++++++|++| +
T Consensus 162 ~~~l~~--~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l 238 (269)
T 4i62_A 162 ETMAKD--LLQNSSLVSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNP-DLAIADLNFEKEQDDSYAVAMKKDSKEL 238 (269)
T ss_dssp HHHHHH--HCTTSEEEEESCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCT-TEEECSCCCCC-CCCEECCEEESSCHHH
T ss_pred HHHHHH--hCCCCcEEecCCHHHHHHHHHcCCCCEEEeChHHHHHHHHhCC-CCeEEeeccCCCcccceEEEEeCCCHHH
Confidence 888833 2345677889999999999999999999999999999888876 5666544443 6678999999998 9
Q ss_pred hHHHHHHHHhhccCccHHHHHHHHHcCC
Q 005717 510 VPYISRAILKVTEDKEKMENIEKALGNQ 537 (681)
Q Consensus 510 ~~~in~~Il~l~e~~G~l~~i~~kw~~~ 537 (681)
.+.+|++|.++.++ |.++++.+||+..
T Consensus 239 ~~~l~~~l~~l~~~-g~~~~i~~k~~~~ 265 (269)
T 4i62_A 239 KEAVDKTIQKLKES-GELDKLIEDAFKA 265 (269)
T ss_dssp HHHHHHHHHHHHHT-THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-ChHHHHHHHHhCC
Confidence 99999999999999 9999999999853
No 35
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.81 E-value=3.5e-19 Score=181.67 Aligned_cols=219 Identities=21% Similarity=0.357 Sum_probs=184.3
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++||||+.. .|+||... .++.+.|+.+|+++++++++|++ ++++.. .|.+++.+|.+|++|+++++++
T Consensus 42 ~~l~v~~~~--~~~P~~~~-----~~g~~~G~~~dl~~~i~~~~g~~--v~~~~~---~~~~~~~~l~~G~~D~~~~~~~ 109 (272)
T 2pvu_A 42 KKVVVGTDA--AFAPFEYM-----QKGKIVGFDVDLLDAVMKAAGLD--YELKNI---GWDPLFASLQSKEVDMGISGIT 109 (272)
T ss_dssp CCEEEEECC--CBTTTBEE-----ETTEEESHHHHHHHHHHHHHTCC--EEEEEC---CHHHHHHHHHHTSSSEECSSCB
T ss_pred CeEEEEECC--CCCCeEEe-----cCCeEEEEHHHHHHHHHHHhCCc--eEEEEC---CHHHHHHHHhCCCCCEEEeCCc
Confidence 689999973 33444443 24689999999999999999955 777776 6999999999999999987788
Q ss_pred EeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCchh
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQIG 354 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~ 354 (681)
.+++|.+.++|+.||+....++++++..
T Consensus 110 ~~~~r~~~~~~s~p~~~~~~~l~~~~~~---------------------------------------------------- 137 (272)
T 2pvu_A 110 ITDERKQSYDFSDPYFEATQVILVKQGS---------------------------------------------------- 137 (272)
T ss_dssp CCHHHHTTEEECSCCEEECEEEEEETTC----------------------------------------------------
T ss_pred CCHHHHhcCccchhhhccceEEEEECCC----------------------------------------------------
Confidence 8999999999999999999999998653
Q ss_pred hHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecChhHH
Q 005717 355 TIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNSFVK 434 (681)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s~~~ 434 (681)
++++++||. |++||+..|+...
T Consensus 138 --------------------------------------------------------~i~~~~dL~--g~~i~~~~g~~~~ 159 (272)
T 2pvu_A 138 --------------------------------------------------------PVKNALDLK--GKTIGVQNATTGQ 159 (272)
T ss_dssp --------------------------------------------------------CCCSGGGGT--TSCEEEETTSHHH
T ss_pred --------------------------------------------------------CCCCHHHhC--CCeEEEEcCchHH
Confidence 378899997 8899999999988
Q ss_pred HHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcC-CceEEECccc--ccCCcEEEecCCCCChH
Q 005717 435 DLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYC-SRYMMVGPTY--RTDGFGFAFPLGSPLVP 511 (681)
Q Consensus 435 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c-~~l~~v~~~~--~~~~~~~~~~k~spl~~ 511 (681)
.++.+..+ ...+++.+.+.++.+++|.+|++|+++.+...+.+++++.. .++.+++... ...+++++++|+..+.+
T Consensus 160 ~~l~~~~~-~~~~i~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~l~~ 238 (272)
T 2pvu_A 160 EAAEKLFG-KGPHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKNSELKA 238 (272)
T ss_dssp HHHHHHHC-SSTTEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEETTCTTHH
T ss_pred HHHHHhcC-CCCeEEEcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCceEEeccccccCCceEEEEEeCCHHHHH
Confidence 88844323 34567788999999999999999999999999999888773 2488887653 56678999999944999
Q ss_pred HHHHHHHhhccCccHHHHHHHHHcCC
Q 005717 512 YISRAILKVTEDKEKMENIEKALGNQ 537 (681)
Q Consensus 512 ~in~~Il~l~e~~G~l~~i~~kw~~~ 537 (681)
.+|++|.++.++ |.++++.+||+..
T Consensus 239 ~l~~~l~~l~~~-g~~~~i~~k~~~~ 263 (272)
T 2pvu_A 239 KVDEALKNVINS-GKYTEIYKKWFGK 263 (272)
T ss_dssp HHHHHHHHHHHT-THHHHHHHHHHSS
T ss_pred HHHHHHHHHHhC-ChHHHHHHHHcCC
Confidence 999999999999 9999999999964
No 36
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.81 E-value=2.2e-19 Score=184.56 Aligned_cols=223 Identities=17% Similarity=0.214 Sum_probs=186.5
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHH----cCC-CcCeEEEeCCCCCHHHHHHHHHhCccceE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQV----LEF-PLPYEFVPFHDGSFDELLHKIEKQEFDTA 269 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~----l~f-~~~~~~v~~~~g~~~gli~~l~~g~~Dia 269 (681)
++||||+.. .++||.+. +.++++.|+++|+++++++. +|. .+++++++. .|..++.+|.+|++|++
T Consensus 17 ~~l~v~~~~--~~~P~~~~----~~~g~~~G~~~dl~~~ia~~l~~~~G~~~~~v~~~~~---~~~~~~~~l~~g~~D~~ 87 (287)
T 2vha_A 17 GVIVVGHRE--SSVPFSYY----DNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPI---TSQNRIPLLQNGTFDFE 87 (287)
T ss_dssp TEEEEEECS--EETTTEEE----CSSSCEESHHHHHHHHHHHHHHHHTTCTTCEEEEEEC---CTTTHHHHHHTTSCSEE
T ss_pred CeEEEEEcC--CCCCceEE----CCCCCcccccHHHHHHHHHHHHHhcCCCCceEEEEEC---CHHHHHHHHHCCCeeEE
Confidence 689999974 23445543 45678999999999999976 562 255778776 78999999999999999
Q ss_pred EEeEEEeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCC
Q 005717 270 VGDTTIVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPP 349 (681)
Q Consensus 270 ~~~~~it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~ 349 (681)
+++++.+++|.+.++||.||+..+.++++++..
T Consensus 88 ~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~----------------------------------------------- 120 (287)
T 2vha_A 88 CGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGG----------------------------------------------- 120 (287)
T ss_dssp CSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTS-----------------------------------------------
T ss_pred eccccCCcchhhcccccceeeecceEEEEECCC-----------------------------------------------
Confidence 888889999999999999999999999998653
Q ss_pred CCchhhHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEec
Q 005717 350 QHQIGTIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQT 429 (681)
Q Consensus 350 ~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~ 429 (681)
+|++++||. |.+||+..
T Consensus 121 -------------------------------------------------------------~i~sl~dL~--g~~v~~~~ 137 (287)
T 2vha_A 121 -------------------------------------------------------------DIKDFADLK--GKAVVVTS 137 (287)
T ss_dssp -------------------------------------------------------------SCCSGGGGT--TCEEEEET
T ss_pred -------------------------------------------------------------CCCCHHHcC--CCEEEEeC
Confidence 478899998 88999999
Q ss_pred ChhHHHHHhhhcC--CccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhc--CCceEEECcccccCCcEEEecC
Q 005717 430 NSFVKDLLTKKLN--FNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASY--CSRYMMVGPTYRTDGFGFAFPL 505 (681)
Q Consensus 430 ~s~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~--c~~l~~v~~~~~~~~~~~~~~k 505 (681)
|+....++.+... ....+++.+.+.++++++|.+|++|+++.+...+.+++++. ..++.+++..+...+++++++|
T Consensus 138 g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 217 (287)
T 2vha_A 138 GTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAYGCMLRK 217 (287)
T ss_dssp TSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEEEEEEECT
T ss_pred CCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcCCeeEEEeChHHHHHHHHhCCCCCceEecCCccccCceEEEEeC
Confidence 9988877732211 12346778899999999999999999999999888888874 2378888877777889999999
Q ss_pred CCC-ChHHHHHHHHhhccCccHHHHHHHHHcCC
Q 005717 506 GSP-LVPYISRAILKVTEDKEKMENIEKALGNQ 537 (681)
Q Consensus 506 ~sp-l~~~in~~Il~l~e~~G~l~~i~~kw~~~ 537 (681)
++| ++..||++|.++.++ |.++++.+||+..
T Consensus 218 ~~~~l~~~l~~~l~~l~~~-g~~~~i~~k~~~~ 249 (287)
T 2vha_A 218 DDPQFKKLMDDTIAQVQTS-GEAEKWFDKWFKN 249 (287)
T ss_dssp TCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHhC-chHHHHHHHHcCC
Confidence 988 999999999999999 9999999999976
No 37
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=99.80 E-value=2e-19 Score=193.40 Aligned_cols=166 Identities=20% Similarity=0.247 Sum_probs=131.7
Q ss_pred CCCCCeEEEecCCccccCCccccccCccceEEEEEecCCChhHHHHHHHHHhh--cCCCCCCCCCCchhHHHHHHHHHHH
Q 005717 1 MMSEGYAWIATQGLSTLLDPVKDMESMQGVLGLRPYIPSSKKLEHFKLRWIKS--ADKPDGSTGGSNLFGLWAYDTVWAI 78 (681)
Q Consensus 1 mm~~~y~WI~t~~~~~~~~~~~~~~~~~Gvlg~~~~~~~~~~~~~f~~~~~~~--~~~~~~~~~~~~~~~~~aYDav~~l 78 (681)
|++++|+||++++..+..+...+.+.+.|++|++++.+.++..++|.++|+++ .++|+.....++.+++++||||+++
T Consensus 207 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~ 286 (384)
T 3saj_A 207 KNGIGYHYILANLGFMDIDLNKFKESGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVM 286 (384)
T ss_dssp CTTCEEEEEESSSCGGGSCHHHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCcccccHHHhhCCCcceEEEEeecCCChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHH
Confidence 56788999999964444433345566788999999999999999999999876 4555444445678999999999999
Q ss_pred HHHHHHHcccCCcccccCCCCCCCccccc--CCCcchHHHHHHHhccceecceeeEEE-eCCcccCccEEEEEeeeCCee
Q 005717 79 AMAVERAGIENSSFLKSNTSKSRVDIAAL--GTFEMGAKLLDTLINTTFEGLSGNFHL-VNGQLEPSAFEIFNVIGTSER 155 (681)
Q Consensus 79 A~Al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~G~~l~~~l~~~~f~GltG~i~F-~~G~~~~~~~~I~n~~~~~~~ 155 (681)
|+|++++...+..+.. +....+|... .+|.+|..|+++|++++|+|+||+|+| ++|++.+..|+|+|+++++++
T Consensus 287 a~Al~~~~~~~~~~~~---~~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~ 363 (384)
T 3saj_A 287 AEAFQSLRRQRIDISR---RGNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIR 363 (384)
T ss_dssp HHHHHHHHHTTCCCCC---CCSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEE
T ss_pred HHHHHHHHhhccceec---CCCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCCcc
Confidence 9999999765433321 1234567654 568899999999999999999999999 799999999999999999999
Q ss_pred EeeeeeCCCCcccc
Q 005717 156 VIGYWTKEKELLSE 169 (681)
Q Consensus 156 ~vG~W~~~~gl~~~ 169 (681)
+||+|++..|+...
T Consensus 364 ~VG~W~~~~gl~~~ 377 (384)
T 3saj_A 364 KIGYWNEDDKFVPA 377 (384)
T ss_dssp EEEEEETTTEEEEC
T ss_pred eeEEEcCCCCcccc
Confidence 99999999888744
No 38
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.80 E-value=2.9e-19 Score=183.68 Aligned_cols=217 Identities=17% Similarity=0.228 Sum_probs=186.5
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++||||+.. .|+||... +.++.+.|+.+|+++.+++++|+ +++++.. .|..++.+|.+|++|++++.++
T Consensus 57 ~~l~v~~~~--~~~P~~~~----~~~g~~~G~~~dl~~~i~~~~G~--~v~~~~~---~~~~~~~~l~~G~~D~~~~~~~ 125 (283)
T 2yln_A 57 GTVTVGTEG--TYAPFTYH----DKDGKLTGYDVEVTRAVAEKLGV--KVEFKET---QWDSMMAGLKAGRFDVVANQVG 125 (283)
T ss_dssp CEEEEEECS--EETTTEEE----CTTSCEESHHHHHHHHHHHHHTC--EEEEEEC---CGGGHHHHHHHTSCSEECSSCC
T ss_pred CeEEEEECC--CCCCeeEE----CCCCCEeeehHHHHHHHHHHcCC--ceEEEEC---CHHHHHHHHHCCCcCEEEecCc
Confidence 679999865 24455554 45678999999999999999994 5788887 5999999999999999988777
Q ss_pred E-eeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCch
Q 005717 275 I-VANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQI 353 (681)
Q Consensus 275 i-t~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~ 353 (681)
. +.+|.+.++|+.||+..+..+++++..
T Consensus 126 ~~t~~r~~~~~~~~p~~~~~~~l~~~~~~--------------------------------------------------- 154 (283)
T 2yln_A 126 LTSPERQATFDKSEPYSWSGAVLVAHNDS--------------------------------------------------- 154 (283)
T ss_dssp CCSHHHHHHEEECSCSEEECEEEEEETTC---------------------------------------------------
T ss_pred cCChhhhcceEeccCeeeecEEEEEECCC---------------------------------------------------
Confidence 7 899999999999999999999998653
Q ss_pred hhHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecChhH
Q 005717 354 GTIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNSFV 433 (681)
Q Consensus 354 ~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s~~ 433 (681)
+|++++||. |++||+..|+..
T Consensus 155 ---------------------------------------------------------~i~s~~dL~--G~~v~v~~g~~~ 175 (283)
T 2yln_A 155 ---------------------------------------------------------NIKSIADIK--GVKTAQSLTSNY 175 (283)
T ss_dssp ---------------------------------------------------------SCCSGGGCT--TSEEEECTTSHH
T ss_pred ---------------------------------------------------------CCCCHHHhC--CCEEEEecCchH
Confidence 378899996 899999999998
Q ss_pred HHHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcC-CceEEEC-cccc-cCCcEEEecCCCC-C
Q 005717 434 KDLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYC-SRYMMVG-PTYR-TDGFGFAFPLGSP-L 509 (681)
Q Consensus 434 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c-~~l~~v~-~~~~-~~~~~~~~~k~sp-l 509 (681)
..++ +..+ .+++.+.+.++.+++|.+|++|+++.+...+.+++++.. .++.+++ ..+. ...++++++|++| +
T Consensus 176 ~~~l-~~~~---~~~~~~~~~~~~~~~l~~g~vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~k~~~~l 251 (283)
T 2yln_A 176 GEKA-KAAG---AQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGNDEA 251 (283)
T ss_dssp HHHH-HHTT---CEEEECSSHHHHHHHHHTTSCCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEECCEEESSCHHH
T ss_pred HHHH-HHcC---CeEEEeCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcccEEEEEeCCCHHH
Confidence 8888 4433 356778899999999999999999999999998888763 3588887 6666 7789999999988 9
Q ss_pred hHHHHHHHHhhccCccHHHHHHHHHcCC
Q 005717 510 VPYISRAILKVTEDKEKMENIEKALGNQ 537 (681)
Q Consensus 510 ~~~in~~Il~l~e~~G~l~~i~~kw~~~ 537 (681)
.+.||++|.++.++ |.+++|.+||+..
T Consensus 252 ~~~i~~al~~l~~~-g~~~~i~~k~~~~ 278 (283)
T 2yln_A 252 VAKFSTAINELKAD-GTLKKLGEQFFGK 278 (283)
T ss_dssp HHHHHHHHHHHHHT-THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHC-CcHHHHHHHHcCC
Confidence 99999999999999 9999999999964
No 39
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.80 E-value=3.1e-19 Score=184.10 Aligned_cols=218 Identities=15% Similarity=0.195 Sum_probs=186.5
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHc---CCCcCeEEEeCCCCCHHHHHHHHHhCccceEEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVL---EFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVG 271 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l---~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~ 271 (681)
++|+|++.. .++||... +.++...|+++|+++++++++ |++ ++++.. .|.+++.++.+|++|++++
T Consensus 44 ~~l~v~~~~--~~~P~~~~----~~~g~~~G~~~dl~~~i~~~~~~~g~~--~~~~~~---~~~~~~~~l~~G~~D~~~~ 112 (292)
T 1xt8_A 44 GVVRIGVFG--DKPPFGYV----DEKGNNQGYDIALAKRIAKELFGDENK--VQFVLV---EAANRVEFLKSNKVDIILA 112 (292)
T ss_dssp SSEEEEECS--EETTTEEE----CTTSCEESHHHHHHHHHHHHHHSCTTC--EEEEEC---CGGGHHHHHHTTSCSEECS
T ss_pred CeEEEEECC--CCCCeeEE----CCCCCEeeEhHHHHHHHHHHhccCCce--EEEEEc---CHHHHHHHHhCCCeeEEee
Confidence 579999864 24455544 456789999999999999999 954 777776 6899999999999999987
Q ss_pred eEEEeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCC
Q 005717 272 DTTIVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQH 351 (681)
Q Consensus 272 ~~~it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~ 351 (681)
++..+++|.+.++|+.||...+.++++++..
T Consensus 113 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------- 143 (292)
T 1xt8_A 113 NFTQTPQRAEQVDFCSPYMKVALGVAVPKDS------------------------------------------------- 143 (292)
T ss_dssp SCBCCHHHHTTEEECCCCEEEEEEEEEETTC-------------------------------------------------
T ss_pred cCCCCcchhcceeeeccceecceEEEEECCC-------------------------------------------------
Confidence 7888999999999999999999999988653
Q ss_pred chhhHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecCh
Q 005717 352 QIGTIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNS 431 (681)
Q Consensus 352 ~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s 431 (681)
++++++||. |++||+..|+
T Consensus 144 -----------------------------------------------------------~i~~~~dL~--g~~i~~~~g~ 162 (292)
T 1xt8_A 144 -----------------------------------------------------------NITSVEDLK--DKTLLLNKGT 162 (292)
T ss_dssp -----------------------------------------------------------CCCSSGGGT--TSEEEEETTS
T ss_pred -----------------------------------------------------------CCCCHHHhC--CCEEEEeCCC
Confidence 378899997 8899999999
Q ss_pred hHHHHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcCCceEEECcccccCCc-EEEecCCCC-C
Q 005717 432 FVKDLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSRYMMVGPTYRTDGF-GFAFPLGSP-L 509 (681)
Q Consensus 432 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~l~~v~~~~~~~~~-~~~~~k~sp-l 509 (681)
....++ +.. ++..++..+.+.++..++|.+|++|+++.+...+.+++++.. ++.+++..+...++ +++++|++| +
T Consensus 163 ~~~~~l-~~~-~~~~~~~~~~~~~~~~~~L~~G~vDa~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~k~~~~l 239 (292)
T 1xt8_A 163 TADAYF-TQN-YPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHP-DFKMGIKELGNKDVIAPAVKKGDKEL 239 (292)
T ss_dssp HHHHHH-HHH-CTTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCT-TEEEEEEEEEEEEEECCEEETTCHHH
T ss_pred cHHHHH-HHh-CCCceEEEcCCHHHHHHHHHcCCccEEEecHHHHHHHHHhCC-CeEEcccccccCceeEEEEeCCCHHH
Confidence 888888 332 244567788999999999999999999999999999988876 58888766767777 999999998 9
Q ss_pred hHHHHHHHHhhccCccHHHHHHHHHcCC
Q 005717 510 VPYISRAILKVTEDKEKMENIEKALGNQ 537 (681)
Q Consensus 510 ~~~in~~Il~l~e~~G~l~~i~~kw~~~ 537 (681)
.+.+|++|.++.++ |.+++|.+||+..
T Consensus 240 ~~~l~~~l~~l~~~-g~~~~i~~k~~~~ 266 (292)
T 1xt8_A 240 KEFIDNLIIKLGQE-QFFHKAYDETLKA 266 (292)
T ss_dssp HHHHHHHHHHHHTT-THHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHhC-cHHHHHHHHhcCC
Confidence 99999999999999 9999999999963
No 40
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.80 E-value=3.5e-19 Score=183.76 Aligned_cols=218 Identities=17% Similarity=0.221 Sum_probs=187.6
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHc---CCCcCeEEEeCCCCCHHHHHHHHHhCccceEEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVL---EFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVG 271 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l---~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~ 271 (681)
++||||+.. .++||... +.++.+.|+.+|+++.+++++ | ++++++.. .|..++..|.+|++|++++
T Consensus 55 ~~l~vg~~~--~~~P~~~~----~~~g~~~G~~~dl~~~i~~~~~~~g--~~v~~~~~---~~~~~~~~l~~G~~D~~~~ 123 (291)
T 2yjp_A 55 GVIRIGVFG--DKPPFGYV----DANGKNQGFDVEIAKDLAKDLLGSP--DKVEFVLT---EAANRVEYVRSGKVDLILA 123 (291)
T ss_dssp TCEEEEECS--EETTTEEE----CTTSCEESHHHHHHHHHHHHHHSCG--GGEEEEEC---CGGGHHHHHHTTSCSEECS
T ss_pred CeEEEEEcC--CCCCceEE----CCCCCEeehHHHHHHHHHHHhccCC--ceEEEEEc---cHHHHHHHHhCCCeeEEEe
Confidence 579999863 24455544 556789999999999999999 9 45777776 5999999999999999988
Q ss_pred eEEEeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCC
Q 005717 272 DTTIVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQH 351 (681)
Q Consensus 272 ~~~it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~ 351 (681)
.+..+.+|.+.++|+.||...+.++++++..
T Consensus 124 ~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~------------------------------------------------- 154 (291)
T 2yjp_A 124 NFTQTPERAEAVDFADPYMKVALGVVSPKNK------------------------------------------------- 154 (291)
T ss_dssp SCBCCHHHHTTEEECCCCEEECEEEEEETTS-------------------------------------------------
T ss_pred CCCCChHHHccceeccCeeecceEEEEeCCC-------------------------------------------------
Confidence 7888999999999999999999999998653
Q ss_pred chhhHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecCh
Q 005717 352 QIGTIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNS 431 (681)
Q Consensus 352 ~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s 431 (681)
.|++++||. |++||+..|+
T Consensus 155 -----------------------------------------------------------~i~sl~dL~--gk~v~~~~g~ 173 (291)
T 2yjp_A 155 -----------------------------------------------------------PITDMAQLK--DQTLLVNKGT 173 (291)
T ss_dssp -----------------------------------------------------------CCCSGGGGT--TSEEEEETTS
T ss_pred -----------------------------------------------------------CCCCHHHhC--CCEEEEecCC
Confidence 388999997 8999999999
Q ss_pred hHHHHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcCCceEEECcccccCCc-EEEecCCCC-C
Q 005717 432 FVKDLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSRYMMVGPTYRTDGF-GFAFPLGSP-L 509 (681)
Q Consensus 432 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~l~~v~~~~~~~~~-~~~~~k~sp-l 509 (681)
....++.+. ++..+++.+.+.+++.+++.+|++|+++.+.+.+.++.++.. .+.+++..+...++ +++++|++| +
T Consensus 174 ~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~~~~l 250 (291)
T 2yjp_A 174 TADAFFTKS--HPEVKLLKFDQNTETFDALKDGRGVALAHDNALLWAWAKENP-NFEVAIGNLGPAEFIAPAVQKGNADL 250 (291)
T ss_dssp HHHHHHHHH--CTTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCT-TEEEEECCSSSCEEECCEEETTCHHH
T ss_pred cHHHHHHHh--CCCceEEEeCCHHHHHHHHHcCCccEEEecHHHHHHHHHhCC-CeEEcCCcccCCcceEEEEeCCCHHH
Confidence 988888332 244567788899999999999999999999999999888876 58888777777778 999999998 9
Q ss_pred hHHHHHHHHhhccCccHHHHHHHHHcCC
Q 005717 510 VPYISRAILKVTEDKEKMENIEKALGNQ 537 (681)
Q Consensus 510 ~~~in~~Il~l~e~~G~l~~i~~kw~~~ 537 (681)
.+.||++|.++.++ |.++++.+||+..
T Consensus 251 ~~~l~~al~~l~~~-g~~~~i~~k~~~~ 277 (291)
T 2yjp_A 251 LNWVNGEIAAMKKD-GRLKAAYEKTLLP 277 (291)
T ss_dssp HHHHHHHHHHHHHH-SHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhC-ChHHHHHHHhccc
Confidence 99999999999999 9999999999863
No 41
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=99.78 E-value=1.9e-18 Score=186.24 Aligned_cols=164 Identities=20% Similarity=0.270 Sum_probs=127.7
Q ss_pred CCCCCeEEEecCCccccCCccccccCccceEEEEEecCCChhHHHHHHHHHhh-cCCCCC-CCCCCchhHHHHHHHHHHH
Q 005717 1 MMSEGYAWIATQGLSTLLDPVKDMESMQGVLGLRPYIPSSKKLEHFKLRWIKS-ADKPDG-STGGSNLFGLWAYDTVWAI 78 (681)
Q Consensus 1 mm~~~y~WI~t~~~~~~~~~~~~~~~~~Gvlg~~~~~~~~~~~~~f~~~~~~~-~~~~~~-~~~~~~~~~~~aYDav~~l 78 (681)
|++++|+||++++..+..+.......+.|++|++.+.+.++.+++|.++|+++ .+.+.. ...+++.+++++||||+++
T Consensus 216 ~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~l 295 (393)
T 3om0_A 216 MTSAFYKYILTTMDFPILHLDGIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVV 295 (393)
T ss_dssp TTSTTCEEEECCTTGGGCCCTTTCCSSCSEEEEECCCTTSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHH
T ss_pred cccCCeEEEEecccccccchhhhhccCCcEEEEEEecCCccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHHHHH
Confidence 56788999999987655443344567789999999988888888888887765 332211 1124678999999999999
Q ss_pred HHHHHHHcccCCcccccCCCCCCCcccccCCCcchHHHHHHHhccceecceeeEEE-eCCcccCccEEEEEeeeCCeeEe
Q 005717 79 AMAVERAGIENSSFLKSNTSKSRVDIAALGTFEMGAKLLDTLINTTFEGLSGNFHL-VNGQLEPSAFEIFNVIGTSERVI 157 (681)
Q Consensus 79 A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~l~~~~f~GltG~i~F-~~G~~~~~~~~I~n~~~~~~~~v 157 (681)
|+|+++++... .......+|....+|.+|..|+++|++++|+|++|+|+| ++|++.+..|+|+|++++++++|
T Consensus 296 a~Al~~~~~~~------~~~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~V 369 (393)
T 3om0_A 296 VSAVRELNRSQ------EIGVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREI 369 (393)
T ss_dssp HHHHHHHTTTS------CCCCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEEEEE
T ss_pred HHHHHHHhhcc------cCcCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccCCceEe
Confidence 99999986432 112335678888889999999999999999999999999 89999889999999999999999
Q ss_pred eeeeCCCCccccc
Q 005717 158 GYWTKEKELLSEL 170 (681)
Q Consensus 158 G~W~~~~gl~~~~ 170 (681)
|+|++..|+....
T Consensus 370 G~w~~~~gl~~~~ 382 (393)
T 3om0_A 370 GVWYSNRTLAMNA 382 (393)
T ss_dssp EEEECC-------
T ss_pred eeEcCCCCccccc
Confidence 9999999987553
No 42
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=99.72 E-value=5.5e-18 Score=180.56 Aligned_cols=141 Identities=22% Similarity=0.271 Sum_probs=110.9
Q ss_pred CCCCCeEEEecCCccccCCccccccCccceEEEEEecCCChhHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHHHHH
Q 005717 1 MMSEGYAWIATQGLSTLLDPVKDMESMQGVLGLRPYIPSSKKLEHFKLRWIKSADKPDGSTGGSNLFGLWAYDTVWAIAM 80 (681)
Q Consensus 1 mm~~~y~WI~t~~~~~~~~~~~~~~~~~Gvlg~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~aYDav~~lA~ 80 (681)
|++++|+||+|++.+...+.. ..+.++|++|++++. |+. .+.+++||||+++|+
T Consensus 219 ~~~~~y~wI~t~~~~~~~~~~-~~~~~~g~~~~~~~~------------W~~-------------~~~~~~yDaV~~~A~ 272 (364)
T 3qel_B 219 LTGYGYTWIVPSLVAGDTDTV-PSEFPTGLISVSYDE------------WDY-------------GLPARVRDGIAIITT 272 (364)
T ss_dssp CSSTTCEEEECHHHHCSTTCC-CTTSCTTCEECCBCT------------TTS-------------CHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEecccccCcccc-cccCCCceEEEeecc------------chh-------------hHHHHHHHHHHHHHH
Confidence 788999999999865544432 134689999999854 432 156899999999999
Q ss_pred HHHHHcccCCcccccCCCCCCCcccccC--CCcchHHHHHHHhccceecceeeEEE-eCCcccCccEEEEEee-eCCeeE
Q 005717 81 AVERAGIENSSFLKSNTSKSRVDIAALG--TFEMGAKLLDTLINTTFEGLSGNFHL-VNGQLEPSAFEIFNVI-GTSERV 156 (681)
Q Consensus 81 Al~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~G~~l~~~l~~~~f~GltG~i~F-~~G~~~~~~~~I~n~~-~~~~~~ 156 (681)
|++++...... .+....+|.... +|..|..|+++|++++|+|+ +++| ++|+|.++.|+|+|++ +.++++
T Consensus 273 A~~~~~~~~~~-----i~~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Iinl~~~~~~~~ 345 (364)
T 3qel_B 273 AASDMLSEHSF-----IPEPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVIILLNKERKWER 345 (364)
T ss_dssp HHHHHHTTTSC-----CCCCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEEEECTTSCEEE
T ss_pred HHHHHHhccCC-----CCCCCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEEEEcCCCCcEE
Confidence 99998754322 223456787664 68899999999999999998 8999 8999999999999998 678999
Q ss_pred eeeeeCCCCccccccCCCCccCCCCCCccCCC
Q 005717 157 IGYWTKEKELLSELNDNNGRATNNLKNPIWPG 188 (681)
Q Consensus 157 vG~W~~~~gl~~~~~~~~~~~~~~l~~i~Wpg 188 (681)
||+|+ +.+|.+ +.++||+
T Consensus 346 VG~W~-~~~L~~-------------~~~~Wp~ 363 (364)
T 3qel_B 346 VGKWK-DKSLQM-------------KYYVWPR 363 (364)
T ss_dssp EEEEC-SSCEEE-------------SCSSCCC
T ss_pred EEEEC-CCeEEe-------------CcCCCCC
Confidence 99998 345543 4688986
No 43
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=99.71 E-value=6.9e-17 Score=174.11 Aligned_cols=160 Identities=19% Similarity=0.266 Sum_probs=126.5
Q ss_pred CCCCCeEEEecCCccccCCccccccCccceEEEEEecCCChhHHHHHHHHHhh--cCCCCCC----CCCCchhHHHHHHH
Q 005717 1 MMSEGYAWIATQGLSTLLDPVKDMESMQGVLGLRPYIPSSKKLEHFKLRWIKS--ADKPDGS----TGGSNLFGLWAYDT 74 (681)
Q Consensus 1 mm~~~y~WI~t~~~~~~~~~~~~~~~~~Gvlg~~~~~~~~~~~~~f~~~~~~~--~~~~~~~----~~~~~~~~~~aYDa 74 (681)
|++++|+||++++.....+.........+++|++++.+.++..++|.++|+++ .+.|... ...++.+++++|||
T Consensus 216 l~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDa 295 (395)
T 3h6g_A 216 MMTEYYHYIFTTLDLFALDVEPYRYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDA 295 (395)
T ss_dssp CCSTTCEEEECCTTGGGBCCTTTTTSCCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHH
T ss_pred ccCCceEEEEecCceeEechHHhccCccceEEEEEecCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhH
Confidence 57789999999875543333222222234799999999899999999999875 3323211 12357799999999
Q ss_pred HHHHHHHHHHHcccCCcccccCCCCCCCcccccCCCcchHHHHHHHhccceecceeeEEE-e-CCcccCccEEEEEeeeC
Q 005717 75 VWAIAMAVERAGIENSSFLKSNTSKSRVDIAALGTFEMGAKLLDTLINTTFEGLSGNFHL-V-NGQLEPSAFEIFNVIGT 152 (681)
Q Consensus 75 v~~lA~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~l~~~~f~GltG~i~F-~-~G~~~~~~~~I~n~~~~ 152 (681)
++++|+|+++++.. .....+|...++|.+|..|.++|++++|+|+||+++| + +|++....|+|++++++
T Consensus 296 v~~~a~Al~~a~~~---------~~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~ 366 (395)
T 3h6g_A 296 VHVVSVAVQQFPQM---------TVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEE 366 (395)
T ss_dssp HHHHHHHHHTCTTC---------CCCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETT
T ss_pred HHHHHHHHHhhhcC---------CCcCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccC
Confidence 99999999987532 1235678888899999999999999999999999999 7 99999889999999999
Q ss_pred CeeEeeeeeCCCCcccc
Q 005717 153 SERVIGYWTKEKELLSE 169 (681)
Q Consensus 153 ~~~~vG~W~~~~gl~~~ 169 (681)
++++||+|++..|+...
T Consensus 367 ~~~~vG~w~~~~g~~~~ 383 (395)
T 3h6g_A 367 GLEKIGTWDPASGLNMT 383 (395)
T ss_dssp EEEEEEEEETTTEECCC
T ss_pred CceEEEEEcCCCCcccc
Confidence 99999999999998754
No 44
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.67 E-value=9.7e-17 Score=161.41 Aligned_cols=214 Identities=15% Similarity=0.331 Sum_probs=173.7
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHc---CCCcCeEEEeCCCCCHHHHHHHHHhCccceEEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVL---EFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVG 271 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l---~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~ 271 (681)
++||||+... ++||...+ ..++.+.|+++|+++.+++++ |+ +++++.. +|.+++..|.+|++|++++
T Consensus 38 ~~l~vg~~~~--~~p~~~~~---~~~g~~~G~~~~l~~~~~~~~~~pg~--~v~~~~~---~~~~~~~~l~~g~~D~~~~ 107 (259)
T 2v25_A 38 GQLIVGVKND--VPHYALLD---QATGEIKGFEVDVAKLLAKSILGDDK--KIKLVAV---NAKTRGPLLDNGSVDAVIA 107 (259)
T ss_dssp TCEEEEECSE--ETTTEEEE---TTTTEEESHHHHHHHHHHHHHHSCTT--SEEEEEC---CTTTHHHHHHTTSCSEECS
T ss_pred CeEEEEECCC--CCCeEEEE---CCCCeEEEeeHHHHHHHHHHhcCCCc--ceEEEEc---CHHHHHHHHhCCCCCEEEe
Confidence 5799998653 33444431 246789999999999999999 84 5777776 6899999999999999988
Q ss_pred eEEEeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCC
Q 005717 272 DTTIVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQH 351 (681)
Q Consensus 272 ~~~it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~ 351 (681)
++..+++|.+.++|+.||...+.++++++..
T Consensus 108 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~------------------------------------------------- 138 (259)
T 2v25_A 108 TFTITPERKRIYNFSEPYYQDAIGLLVLKEK------------------------------------------------- 138 (259)
T ss_dssp SCBCCHHHHTTEEECSCSEEEEEEEEEEGGG-------------------------------------------------
T ss_pred cCccCHHHHhcCcccccceeCceEEEEeCCC-------------------------------------------------
Confidence 7788899999999999999999999998653
Q ss_pred chhhHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecCh
Q 005717 352 QIGTIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNS 431 (681)
Q Consensus 352 ~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s 431 (681)
++++++||. +.+||+..|+
T Consensus 139 -----------------------------------------------------------~i~~~~dL~--g~~i~~~~g~ 157 (259)
T 2v25_A 139 -----------------------------------------------------------KYKSLADMK--GANIGVAQAA 157 (259)
T ss_dssp -----------------------------------------------------------CCCSGGGCT--TCEEEEETTC
T ss_pred -----------------------------------------------------------CCCCHHHhC--CCEEEEecCC
Confidence 477899998 8889999888
Q ss_pred hHHHHHhh---hcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcCCceEEECcccccCCcEEEecCCCC
Q 005717 432 FVKDLLTK---KLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSRYMMVGPTYRTDGFGFAFPLGSP 508 (681)
Q Consensus 432 ~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~l~~v~~~~~~~~~~~~~~k~sp 508 (681)
....++.+ ..+++ .++..+.+.++..+++.+|++|+++.+...+.++.++.. + +++..+...+++++++|++|
T Consensus 158 ~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~k~~~ 233 (259)
T 2v25_A 158 TTKKAIGEAAKKIGID-VKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKS-E--ILPDSFEPQSYGIVTKKDDP 233 (259)
T ss_dssp SHHHHHHHHHHHTTCC-CEEEEESSHHHHHHHHHTTSSSEEEEEHHHHTTTCCTTE-E--ECSCCCSEEEECCEEETTCH
T ss_pred chHHHHHHHHHhcCCc-eeEEEeCCHHHHHHHHHcCCCcEEEecHHHHHHHHHhCC-C--ccccccccceeEEEEcCCCH
Confidence 77766622 12332 255678899999999999999999999888887777655 3 55666666788999999986
Q ss_pred -ChHHHHHHHHhhccCccHHHHHHHHHc
Q 005717 509 -LVPYISRAILKVTEDKEKMENIEKALG 535 (681)
Q Consensus 509 -l~~~in~~Il~l~e~~G~l~~i~~kw~ 535 (681)
+.+.+|++|.++.++ ++++.+||.
T Consensus 234 ~l~~~~~~~l~~~~~~---~~~i~~k~~ 258 (259)
T 2v25_A 234 AFAKYVDDFVKEHKNE---IDALAKKWG 258 (259)
T ss_dssp HHHHHHHHHHHHTHHH---HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHhC
Confidence 999999999999976 888999985
No 45
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=99.65 E-value=7.9e-16 Score=167.92 Aligned_cols=170 Identities=20% Similarity=0.302 Sum_probs=125.1
Q ss_pred CCCCCeEEEecCCccccCCc-----------c--ccccCccceEEEEEecCCC--------hhHHHHHHHHHhh-cCCCC
Q 005717 1 MMSEGYAWIATQGLSTLLDP-----------V--KDMESMQGVLGLRPYIPSS--------KKLEHFKLRWIKS-ADKPD 58 (681)
Q Consensus 1 mm~~~y~WI~t~~~~~~~~~-----------~--~~~~~~~Gvlg~~~~~~~~--------~~~~~f~~~~~~~-~~~~~ 58 (681)
|++++|+||.++++.+.|+. . ...+.++|++++.++.+.. ...++|.++|+++ ..
T Consensus 231 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~~--- 307 (433)
T 4f11_A 231 MYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSG--- 307 (433)
T ss_dssp CCSTTCEEEEESCSCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHTT---
T ss_pred CCCCCeEEEEcCcchHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcCC---
Confidence 45677999999997776641 1 2346789999999987543 2378899999865 11
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHcccCCcccccCCCCCCCccc--ccCCCcchHHHHHHHhccceecceeeEEEeC
Q 005717 59 GSTGGSNLFGLWAYDTVWAIAMAVERAGIENSSFLKSNTSKSRVDIA--ALGTFEMGAKLLDTLINTTFEGLSGNFHLVN 136 (681)
Q Consensus 59 ~~~~~~~~~~~~aYDav~~lA~Al~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~G~~l~~~l~~~~f~GltG~i~F~~ 136 (681)
.+++.++.++||||+++|+|++++...... ...+.+|. ....|.+|..|+++|++++|+|++|+|+|++
T Consensus 308 ---~~~~~~a~~~YDAv~~la~Al~~a~~~~~~------~~~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f~~ 378 (433)
T 4f11_A 308 ---VGPSKFHGYAYDGIWVIAKTLQRAMETLHA------SSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVFRN 378 (433)
T ss_dssp ---SCCCTTHHHHHHHHHHHHHHHHHHHHHHHH------SSSCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEEET
T ss_pred ---CCcccchhhHHHHHHHHHHHHHHHHHHHhc------cCCCCcccccccccHHHHHHHHHHHHhcEEEccceEEEEec
Confidence 145678999999999999999998643100 00011122 2234668999999999999999999999988
Q ss_pred CcccCccEEEEEeeeCCeeEeeeeeCCCC-ccccccCCCCccCCCCCCccCCCCCcCCC
Q 005717 137 GQLEPSAFEIFNVIGTSERVIGYWTKEKE-LLSELNDNNGRATNNLKNPIWPGNTIDQP 194 (681)
Q Consensus 137 G~~~~~~~~I~n~~~~~~~~vG~W~~~~g-l~~~~~~~~~~~~~~l~~i~Wpg~~~~~p 194 (681)
|++. ..|+|+|++++++++||+|++... |.... +.|.|||+..+.+
T Consensus 379 Gd~~-~~~~I~~~~~g~~~~VG~~~~~~~~l~~~~-----------~~i~W~~~~~P~D 425 (433)
T 4f11_A 379 GERM-GTIKFTQFQDSREVKVGEYNAVADTLEIIN-----------DTIRFQGSEPPKD 425 (433)
T ss_dssp TEEE-CEEEEEEEETTEEEEEEEEETTTTEEEECT-----------TTCCCSSSSCCCS
T ss_pred Ccee-eeEEEEEEECCceEEEEEEECCCCeEEEeC-----------CceECCCCCCCCC
Confidence 9997 799999999988999999986432 32211 3689998775443
No 46
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=99.61 E-value=3.4e-15 Score=160.23 Aligned_cols=142 Identities=16% Similarity=0.321 Sum_probs=109.9
Q ss_pred CCCCCeEEEecCCccccCCccccccCccceEEEEEecCCChhHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHHHHH
Q 005717 1 MMSEGYAWIATQGLSTLLDPVKDMESMQGVLGLRPYIPSSKKLEHFKLRWIKSADKPDGSTGGSNLFGLWAYDTVWAIAM 80 (681)
Q Consensus 1 mm~~~y~WI~t~~~~~~~~~~~~~~~~~Gvlg~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~aYDav~~lA~ 80 (681)
|++++|+||++++.... ....+.++|++|++++.+.. .++++||||+++|+
T Consensus 240 ~~~~~~~~i~~~~~~~~---~~~~~~~~g~lg~~~~~~~~--------------------------~~~~~YdAV~~~a~ 290 (384)
T 3qek_A 240 MTGAGYVWLVGEREISG---SALRYAPDGIIGLQLINGKN--------------------------ESAHISDAVAVVAQ 290 (384)
T ss_dssp CSSTTCEEECCSGGGSG---GGGSSCCTTCEEEEETTTTC--------------------------HHHHHHHHHHHHHH
T ss_pred CccCCeEEEEecccccc---ccccccCCccEEEEEcCCCc--------------------------hhHHHHHHHHHHHH
Confidence 56788999999964322 23456899999999965421 37889999999999
Q ss_pred HHHHHcccCCcccccCCCCCCCccc-ccCCCcchHHHHHHHhccce-ecceeeEEE-eCCcccCccEEEEEeeeCCeeEe
Q 005717 81 AVERAGIENSSFLKSNTSKSRVDIA-ALGTFEMGAKLLDTLINTTF-EGLSGNFHL-VNGQLEPSAFEIFNVIGTSERVI 157 (681)
Q Consensus 81 Al~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~~l~~~l~~~~f-~GltG~i~F-~~G~~~~~~~~I~n~~~~~~~~v 157 (681)
|++++..+.. . .....+|. ...+|..|..|.+++.+++| +|++|+|+| ++|++.+..|+|+|+++.++++|
T Consensus 291 Al~~~~~~~~-~-----~~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~~~~~I~~~~~~~~~~V 364 (384)
T 3qek_A 291 AIHELFEMEN-I-----TDPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQYSIMNLQNRKLVQV 364 (384)
T ss_dssp HHHHHHTSSS-C-----CCCCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCTTSCBCSCCEEEEEEETTEEEEE
T ss_pred HHHHHHhccC-C-----CCCCCccccCCCccccHHHHHHHHhcCCccCCCCcceEECCCCCCCcccEEEEEEcCCceEEE
Confidence 9999875431 1 11234463 46789999999999999998 999999999 89999778999999999999999
Q ss_pred eeeeCCCCccccccCCCCccCCCCCCccCCCC
Q 005717 158 GYWTKEKELLSELNDNNGRATNNLKNPIWPGN 189 (681)
Q Consensus 158 G~W~~~~gl~~~~~~~~~~~~~~l~~i~Wpg~ 189 (681)
|+|+.. .+... ...|.||++
T Consensus 365 G~w~~~-~l~i~-----------~~~i~W~~~ 384 (384)
T 3qek_A 365 GIFNGS-YIIQN-----------DRKIIWPGG 384 (384)
T ss_dssp EEECSS-SEEEC-----------SSCCCCSCC
T ss_pred EEEeCC-eEeec-----------cceeeCCCC
Confidence 999932 33322 246889874
No 47
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=99.45 E-value=7.7e-13 Score=144.55 Aligned_cols=164 Identities=16% Similarity=0.205 Sum_probs=109.5
Q ss_pred CCCCCeEEEecCCccc------cCCcccc-----ccCccceEEEEEecCCChhHHHHHHHHHhh-cCCCCCCCCCCchhH
Q 005717 1 MMSEGYAWIATQGLST------LLDPVKD-----MESMQGVLGLRPYIPSSKKLEHFKLRWIKS-ADKPDGSTGGSNLFG 68 (681)
Q Consensus 1 mm~~~y~WI~t~~~~~------~~~~~~~-----~~~~~Gvlg~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~ 68 (681)
|+++.|+||.++++.. .|..... ....+++.|+.++.+..+.+++|.++|+.+ .+.+-..+..++.++
T Consensus 236 l~~~~~v~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~F~~~~~~~~~~~~~~~~~~~~~~~ 315 (441)
T 1jdp_A 236 MTSGDYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFV 315 (441)
T ss_dssp CTTTTCEEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHH
T ss_pred CCCCCEEEEEEeccccccccCCCCccCCcccHHHHHHHHhheEEeecCCCCchHHHHHHHHHHHHhhCCCCccchhhhHH
Confidence 4567899999996543 2322111 134667788888878888999999999875 221100111356789
Q ss_pred HHHHHHHHHHHHHHHHHcccCCcccccCCCCCCCcccccCCCcchHHHHHHHhccceecceeeEEE-eCCcccCccEEEE
Q 005717 69 LWAYDTVWAIAMAVERAGIENSSFLKSNTSKSRVDIAALGTFEMGAKLLDTLINTTFEGLSGNFHL-VNGQLEPSAFEIF 147 (681)
Q Consensus 69 ~~aYDav~~lA~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~l~~~~f~GltG~i~F-~~G~~~~~~~~I~ 147 (681)
.++||||+++|+|++++...+. .+.+|..|+++|++++|+|++|+|.| ++|++. ..|+|+
T Consensus 316 ~~~YdAv~~~A~Al~~~~~~~~------------------~~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~~-~~~~I~ 376 (441)
T 1jdp_A 316 EGFHDAILLYVLALHEVLRAGY------------------SKKDGGKIIQQTWNRTFEGIAGQVSIDANGDRY-GDFSVI 376 (441)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC------------------CTTCHHHHHHHHSSEEEEETTEEEEECTTSBBC-CEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhCC------------------CCCCHHHHHHHHhCCeeECCccceEECCCCCcc-ccEEEE
Confidence 9999999999999999863210 03467899999999999999999999 789987 789999
Q ss_pred Eeee---CCeeEeeeeeCCCCccccccCCCCccCCCCCCccCCCCCcC
Q 005717 148 NVIG---TSERVIGYWTKEKELLSELNDNNGRATNNLKNPIWPGNTID 192 (681)
Q Consensus 148 n~~~---~~~~~vG~W~~~~gl~~~~~~~~~~~~~~l~~i~Wpg~~~~ 192 (681)
|++. +.+++||.|++..+..... ...++.|||+...
T Consensus 377 ~~~~~~~g~~~~VG~~~~~~~~~~~~---------~~~~i~w~g~~l~ 415 (441)
T 1jdp_A 377 AMTDVEAGTQEVIGDYFGKEGRFEMR---------PNVKYPWGPLKLR 415 (441)
T ss_dssp EEEETTTTEEEEEEEEETTTTEEEEC---------C------------
T ss_pred ecccCCCCceEEEEEEcCCCCeEEEC---------CCceeeCCCCCcc
Confidence 9974 3489999999876533211 1246888886543
No 48
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=99.44 E-value=8.2e-13 Score=143.92 Aligned_cols=160 Identities=16% Similarity=0.211 Sum_probs=116.1
Q ss_pred CCCCCeEEEecCCccccC-----------Cc-----c-ccccCccceEEEEEecCCChhHHHHHHHHHhh-cC-CCCC-C
Q 005717 1 MMSEGYAWIATQGLSTLL-----------DP-----V-KDMESMQGVLGLRPYIPSSKKLEHFKLRWIKS-AD-KPDG-S 60 (681)
Q Consensus 1 mm~~~y~WI~t~~~~~~~-----------~~-----~-~~~~~~~Gvlg~~~~~~~~~~~~~f~~~~~~~-~~-~~~~-~ 60 (681)
|.+++|+||.+++..... +. . ...+.++|++++.+..|.++.+++|.++|+++ .. .... .
T Consensus 231 ~~~~~~~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 310 (435)
T 1dp4_A 231 LTGEDYVFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTVE 310 (435)
T ss_dssp CCTTTCEEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCSHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCEEEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEecCCCCChhHHHHHHHHHHHhcCCCCcccc
Confidence 345569999999654321 10 1 23346899999999888888899999998765 11 0011 1
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHcccCCcccccCCCCCCCcccccCCCcchHHHHHHHhccceecceeeEEE-eCCcc
Q 005717 61 TGGSNLFGLWAYDTVWAIAMAVERAGIENSSFLKSNTSKSRVDIAALGTFEMGAKLLDTLINTTFEGLSGNFHL-VNGQL 139 (681)
Q Consensus 61 ~~~~~~~~~~aYDav~~lA~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~l~~~~f~GltG~i~F-~~G~~ 139 (681)
...++.++.++||||+++|+||+++...+. .+.++..|+++|++++|+|++|++.| ++|++
T Consensus 311 ~~~~~~~~~~~ydav~~~a~Al~~~~~~~~------------------~~~~~~~l~~~l~~~~f~g~~G~v~fd~~g~~ 372 (435)
T 1dp4_A 311 DGLKNIIPASFHDGLLLYVQAVTETLAQGG------------------TVTDGENITQRMWNRSFQGVTGYLKIDRNGDR 372 (435)
T ss_dssp CSGGGHHHHHHHHHHHHHHHHHHHHHHTTC------------------CTTCHHHHHHTTTTEEEEETTEEEEECTTSBB
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHcCC------------------CCCCHHHHHHHHhCceeeccceeEEECCCCCc
Confidence 113567899999999999999999853211 12467899999999999999999999 78998
Q ss_pred cCccEEEEEe--eeCCeeEeeeeeCCCC-ccccccCCCCccCCCCCCccCCCC
Q 005717 140 EPSAFEIFNV--IGTSERVIGYWTKEKE-LLSELNDNNGRATNNLKNPIWPGN 189 (681)
Q Consensus 140 ~~~~~~I~n~--~~~~~~~vG~W~~~~g-l~~~~~~~~~~~~~~l~~i~Wpg~ 189 (681)
. ..|+|+|+ .++.++.||.|++..+ +... +...|.||++
T Consensus 373 ~-~~~~i~~~~~~~g~~~~vg~~~~~~~~l~~~----------~~~~i~W~~~ 414 (435)
T 1dp4_A 373 D-TDFSLWDMDPETGAFRVVLNYNGTSQELMAV----------SEHKLYWPLG 414 (435)
T ss_dssp C-CCEEEEEECTTTCCEEEEEEECTTTCCEEES----------TTCCCCCTTS
T ss_pred c-ceeEEEEecCCCCcEEEEEEecCCCceEEEc----------CCceeeCCCC
Confidence 7 69999999 4455999999998654 2210 1246899986
No 49
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=99.14 E-value=1.3e-10 Score=128.34 Aligned_cols=147 Identities=20% Similarity=0.386 Sum_probs=91.9
Q ss_pred eEEEecCCccccCCcc-ccccCccceEEEEEecCCChhHHHHHHH---------------HHhh-c-CCC----------
Q 005717 6 YAWIATQGLSTLLDPV-KDMESMQGVLGLRPYIPSSKKLEHFKLR---------------WIKS-A-DKP---------- 57 (681)
Q Consensus 6 y~WI~t~~~~~~~~~~-~~~~~~~Gvlg~~~~~~~~~~~~~f~~~---------------~~~~-~-~~~---------- 57 (681)
++||.++.+....... ......+|++|+.++....+.+++|... |... . ..+
T Consensus 276 ~~wI~s~~w~~~~~~~~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~~~~~w~~~f~C~~~~~~~~~~~~~ 355 (481)
T 3mq4_A 276 FLWVGSDSWGSKINPLHQHEDIAEGAITIQPKRATVEGFDAYFTSRTLENNRRNVWFAEYWEENFNCKLTISGSKKEDTD 355 (481)
T ss_dssp CCEEEC-----------------CCCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTHHHHHHHHHTCCC-----------
T ss_pred eEEEEECccccccccccccchhhccEEEEecCcCccccHHHHhhcCCcCcCCCCHHHHHHHHHhcCCCCCCccccccccC
Confidence 8999998433221111 2346789999999999999999888664 3221 0 000
Q ss_pred --CCCCC--------CCchhHHHHHHHHHHHHHHHHHHcccCCcccccCCCCCCCcccccCCCcchHHHHHHHhccceec
Q 005717 58 --DGSTG--------GSNLFGLWAYDTVWAIAMAVERAGIENSSFLKSNTSKSRVDIAALGTFEMGAKLLDTLINTTFEG 127 (681)
Q Consensus 58 --~~~~~--------~~~~~~~~aYDav~~lA~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~l~~~~f~G 127 (681)
+.... ........+||||+++|+|||++..... ......|.....+ .+.+|+++|++++|.+
T Consensus 356 ~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~-------~~~~~~c~~~~~~-~~~qL~~~Lk~v~F~~ 427 (481)
T 3mq4_A 356 RKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLC-------ADYRGVCPEMEQA-GGKKLLKYIRNVNFNG 427 (481)
T ss_dssp -CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHC-------C----CCHHHHTS-CHHHHHHHHHTCEEEC
T ss_pred CCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhC-------CCCCCCCCCCCCc-CHHHHHHHHhcceeec
Confidence 01010 0113445799999999999999864211 1112345443333 5678999999999999
Q ss_pred cee-eEEE-eCCcccCccEEEEEeee--C---CeeEeeeee
Q 005717 128 LSG-NFHL-VNGQLEPSAFEIFNVIG--T---SERVIGYWT 161 (681)
Q Consensus 128 ltG-~i~F-~~G~~~~~~~~I~n~~~--~---~~~~vG~W~ 161 (681)
.+| .|.| ++|++. ..|+|+|++. + .+++||.|+
T Consensus 428 ~~G~~v~fd~~Gd~~-~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 428 SAGTPVMFNKNGDAP-GRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp TTSSEEECCTTSCCC-CEEEEEEEC-----CCCEEEEEEEE
T ss_pred CCCCEEEECCCCCCc-eeEEEEEEEECCCCcEEEEEEEEEc
Confidence 999 6999 889986 7999999972 1 468999998
No 50
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=99.08 E-value=5.2e-10 Score=125.77 Aligned_cols=162 Identities=16% Similarity=0.258 Sum_probs=105.9
Q ss_pred CeEEEecCCccccCCccc-cccCccceEEEEEecCCChhHHHHHH---------------HHHhh-cC-CC--------C
Q 005717 5 GYAWIATQGLSTLLDPVK-DMESMQGVLGLRPYIPSSKKLEHFKL---------------RWIKS-AD-KP--------D 58 (681)
Q Consensus 5 ~y~WI~t~~~~~~~~~~~-~~~~~~Gvlg~~~~~~~~~~~~~f~~---------------~~~~~-~~-~~--------~ 58 (681)
+++||.++.+........ ..+.++|++++.++....+.+++|.. .|+.. .. .+ .
T Consensus 270 ~~~~i~s~~~~~~~~~~~~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~~p~~~~~~~~w~~~f~c~~~~~~~~~~~C 349 (555)
T 2e4u_A 270 SFTWVASDGWGAQESIVKGSEHVAYGAITLELASHPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRQVC 349 (555)
T ss_dssp CCEEEECTTTTTCGGGTTTCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTHHHHHHHHTTCCCC------CCC
T ss_pred CeEEEEeccccccchhhccchhhcceEEEEEeccCCCCcHHHHHhhCCcccCCCCHHHHHHHHHHcCCCCCCCCccCCCC
Confidence 799999984332111111 13457999999998766666555443 35443 11 00 0
Q ss_pred CC-------CCCCchhHHHHHHHHHHHHHHHHHHcccCCcccccCCCCCCCcccccCCCcchHHHHH-HHhcccee----
Q 005717 59 GS-------TGGSNLFGLWAYDTVWAIAMAVERAGIENSSFLKSNTSKSRVDIAALGTFEMGAKLLD-TLINTTFE---- 126 (681)
Q Consensus 59 ~~-------~~~~~~~~~~aYDav~~lA~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~-~l~~~~f~---- 126 (681)
.. ...+..++..+||||+++|+|||++..... ......|.... ..++.+|++ +|++++|+
T Consensus 350 ~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~-------~~~~~~~~~~~-~~~~~~l~~~~L~~v~f~~~~~ 421 (555)
T 2e4u_A 350 DKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLC-------PQTTKLCDAMK-ILDGKKLYKEYLLKIQFTAPFN 421 (555)
T ss_dssp CTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHC-------TTCSSCCGGGT-SCCHHHHHHHHTTCEEECCSSS
T ss_pred CCccccccccccccccchhhHHHHHHHHHHHHHHHhhhc-------CCCCccccccC-CCCcccccHHhHhceeeccccc
Confidence 00 001345788999999999999999864211 00112344322 246789999 99999999
Q ss_pred --cceee-EEE-eCCcccCccEEEEEeee--C--CeeEeeeeeCCCCccccccCCCCccCCCCCCccCCC
Q 005717 127 --GLSGN-FHL-VNGQLEPSAFEIFNVIG--T--SERVIGYWTKEKELLSELNDNNGRATNNLKNPIWPG 188 (681)
Q Consensus 127 --GltG~-i~F-~~G~~~~~~~~I~n~~~--~--~~~~vG~W~~~~gl~~~~~~~~~~~~~~l~~i~Wpg 188 (681)
|++|+ |.| ++|++. ..|+|+|++. + .+++||.|++ .|.... ..|.|++
T Consensus 422 ~~g~~G~~v~fd~~Gd~~-~~y~I~~~~~~~g~~~~~~VG~~~~--~l~i~~-----------~~I~W~~ 477 (555)
T 2e4u_A 422 PNKGADSIVKFDTFGDGM-GRYNVFNLQQTGGKYSYLKVGHWAE--TLSLDV-----------DSIHWSR 477 (555)
T ss_dssp CCSSSCCEEECCTTSCCC-CCEEEEEEECTTSSCEEEEEEEESS--SEECCG-----------GGCCCTT
T ss_pred ccCCCCCeEEEcCCCCcc-ceEEEEEEEecCCcEEEEEEEEecc--eEEEec-----------cccccCC
Confidence 99998 999 889986 7899999962 2 3899999994 444322 3688976
No 51
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=99.06 E-value=4.2e-10 Score=124.03 Aligned_cols=162 Identities=15% Similarity=0.246 Sum_probs=104.0
Q ss_pred eEEEecCCccccCCcc-ccccCccceEEEEEecCCChhHHHHHHHH---------------Hhh-c-CCC--------CC
Q 005717 6 YAWIATQGLSTLLDPV-KDMESMQGVLGLRPYIPSSKKLEHFKLRW---------------IKS-A-DKP--------DG 59 (681)
Q Consensus 6 y~WI~t~~~~~~~~~~-~~~~~~~Gvlg~~~~~~~~~~~~~f~~~~---------------~~~-~-~~~--------~~ 59 (681)
++||.++.+....... .....++|++|+.++..+.+.+++|.... ... . ..+ +.
T Consensus 270 ~~wI~s~~w~~~~~~~~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~~~~~w~~~f~C~~~~~~~~~~~C~ 349 (479)
T 3sm9_A 270 FTWVASDGWGAQESIIKGSEHVAYGAITLELASQPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRRVCD 349 (479)
T ss_dssp CEEEECTTTTTCHHHHTTCTTTTTTCEEEEECCCCCHHHHHHHHTCCTTTCTTCTTHHHHHHHHHTCBCCC---CSCBCC
T ss_pred EEEEEechhhcCccccccccccCceEEEEEeccCCCcchhhHhhccCcCcCCCCHHHHHHHHHHcCCCCCCCcccccCCC
Confidence 8999999533211111 22356899999999999999988887653 221 1 000 00
Q ss_pred CCC-------CCchhHHHHHHHHHHHHHHHHHHcccCCcccccCCCCCCCcccccCCCcchHHHH-HHHhccceecc---
Q 005717 60 STG-------GSNLFGLWAYDTVWAIAMAVERAGIENSSFLKSNTSKSRVDIAALGTFEMGAKLL-DTLINTTFEGL--- 128 (681)
Q Consensus 60 ~~~-------~~~~~~~~aYDav~~lA~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~-~~l~~~~f~Gl--- 128 (681)
... ........+||||+++|+|||++..... ......|..... ..+.+|+ ++|++++|++.
T Consensus 350 ~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~-------~~~~~~c~~~~~-~~~~qL~~~~Lk~v~F~~~~~~ 421 (479)
T 3sm9_A 350 KHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLC-------PNTTKLCDAMKI-LDGKKLYKDYLLKINFTAPFNP 421 (479)
T ss_dssp TTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHS-------TTCSSCCHHHHS-CCHHHHHHHTGGGCCEECTTC-
T ss_pred CccccccCccccccchhhHHHHHHHHHHHHHHHHHhhc-------CCCCcCCCCCCC-cChHHHHHHHhcceeeccccCc
Confidence 000 0112346899999999999999864211 111234543221 2567899 99999999998
Q ss_pred ---ee-eEEE-eCCcccCccEEEEEeeeC----CeeEeeeeeCCCCccccccCCCCccCCCCCCccCCCC
Q 005717 129 ---SG-NFHL-VNGQLEPSAFEIFNVIGT----SERVIGYWTKEKELLSELNDNNGRATNNLKNPIWPGN 189 (681)
Q Consensus 129 ---tG-~i~F-~~G~~~~~~~~I~n~~~~----~~~~vG~W~~~~gl~~~~~~~~~~~~~~l~~i~Wpg~ 189 (681)
+| .|.| ++|++. ..|+|+|++.. .+++||.|+ ..|.... ..|.|||.
T Consensus 422 ~~~~g~~v~fd~~G~~~-~~YdI~n~~~~~~~~~~~~VG~~~--~~l~i~~-----------~~I~W~~~ 477 (479)
T 3sm9_A 422 NKDADSIVKFDTFGDGM-GRYNVFNFQNVGGKYSYLKVGHWA--ETLSLDV-----------NSIHWSRN 477 (479)
T ss_dssp ----CCEECCCTTCBCC-CCEEEEEEEESSSCEEEEEEEEES--SSEEECG-----------GGCCCC--
T ss_pred cccCCCeEEECCCCCcc-cceEEEEEEECCCcEEEEEEEEEe--ceEEEec-----------ceeEeCCC
Confidence 56 5999 899986 79999999732 268999998 3444332 36889875
No 52
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=99.05 E-value=6.5e-10 Score=123.07 Aligned_cols=148 Identities=18% Similarity=0.311 Sum_probs=98.8
Q ss_pred eEEEecCCccccCCcc-ccccCccceEEEEEecCCChhHHHHHHH---------------HHhh--cCCC----------
Q 005717 6 YAWIATQGLSTLLDPV-KDMESMQGVLGLRPYIPSSKKLEHFKLR---------------WIKS--ADKP---------- 57 (681)
Q Consensus 6 y~WI~t~~~~~~~~~~-~~~~~~~Gvlg~~~~~~~~~~~~~f~~~---------------~~~~--~~~~---------- 57 (681)
+.||.++++....... ......+|++|+.++.++.+.+++|... |... ...+
T Consensus 285 ~~~i~s~~w~~~~~~~~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~~~~~ 364 (496)
T 3ks9_A 285 FSLIGSDGWADRDEVIEGYEVEANGGITIKLQSPEVRSFDDYFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFK 364 (496)
T ss_dssp CEEEECTTTTTCHHHHTTCHHHHTTCEEEEECCCCCHHHHHHHTTCCTTTCCSCTTHHHHHHHHTTCBCCC-----CCCS
T ss_pred EEEEEechhccccccccccccccCceEEEeccCCcCcchHhHhccCCcCCCCCCHHHHHHHHHHcCCCCCCCcccccccc
Confidence 6899998433211111 2334689999999999999999988764 3322 1000
Q ss_pred --CCCCCCC------chhHHHHHHHHHHHHHHHHHHcccCCcccccCCCCCCCcccccCCCcchHHHHHHHhccceecce
Q 005717 58 --DGSTGGS------NLFGLWAYDTVWAIAMAVERAGIENSSFLKSNTSKSRVDIAALGTFEMGAKLLDTLINTTFEGLS 129 (681)
Q Consensus 58 --~~~~~~~------~~~~~~aYDav~~lA~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~l~~~~f~Glt 129 (681)
+.....+ ......+|+||+|+|+|||++..... ......|.....+ .+.+|+++|++++|.+.+
T Consensus 365 ~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m~~~~~-------~~~~~~c~~~~~~-~~~qL~~~Lk~v~f~~~~ 436 (496)
T 3ks9_A 365 RICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALC-------PGHVGLCDAMKPI-DGSKLLDFLIKSSFIGVS 436 (496)
T ss_dssp SBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHS-------TTCSSCCGGGSSC-CHHHHHHHHHTCEEECTT
T ss_pred CCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHhccC-------CCCCCCCcCCCCC-CHHHHHHHHHhcCCcCCC
Confidence 0000000 11124699999999999999874311 1112346554433 567999999999999999
Q ss_pred ee-EEE-eCCcccCccEEEEEeee--C---CeeEeeeeeC
Q 005717 130 GN-FHL-VNGQLEPSAFEIFNVIG--T---SERVIGYWTK 162 (681)
Q Consensus 130 G~-i~F-~~G~~~~~~~~I~n~~~--~---~~~~vG~W~~ 162 (681)
|+ +.| ++|+.. ..|+|+|++. + .+++||.|+.
T Consensus 437 g~~v~fd~~gd~~-~~YdI~n~~~~~~~~~~~~~VG~~~~ 475 (496)
T 3ks9_A 437 GEEVWFDEKGDAP-GRYDIMNLQYTEANRYDYVHVGTWHE 475 (496)
T ss_dssp SCEEECCTTSCCC-CEEEEEEEEECC--CEEEEEEEEEET
T ss_pred CCEEEECCCCCcc-ceEEEEEEEECCCCCEEEEEEEEEeC
Confidence 96 999 889986 6999999973 2 2689999983
No 53
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=98.82 E-value=9.5e-09 Score=108.80 Aligned_cols=108 Identities=21% Similarity=0.269 Sum_probs=91.6
Q ss_pred cCccceEEEEEecCC---ChhHHHHHHHHHhh-cCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcccCCcccccCCCCC
Q 005717 25 ESMQGVLGLRPYIPS---SKKLEHFKLRWIKS-ADKPDGSTGGSNLFGLWAYDTVWAIAMAVERAGIENSSFLKSNTSKS 100 (681)
Q Consensus 25 ~~~~Gvlg~~~~~~~---~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~aYDav~~lA~Al~~~~~~~~~~~~~~~~~~ 100 (681)
...+|++....+.+. .+..++|.++|+++ .. .++.++..+|||++++++|+++++.
T Consensus 250 ~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~-------~p~~~~~~~yda~~~~~~al~~ag~------------- 309 (366)
T 3td9_A 250 EAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKYGK-------EPAALNALGYDAYMVLLDAIERAGS------------- 309 (366)
T ss_dssp GGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHHSS-------CCCHHHHHHHHHHHHHHHHHHHHTS-------------
T ss_pred HHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHHCC-------CCchhHHHHHHHHHHHHHHHHHhCC-------------
Confidence 467898888876555 56789999999886 43 3567999999999999999999752
Q ss_pred CCcccccCCCcchHHHHHHHhccc-eecceeeEEE-eCCcccCccEEEEEeeeCCeeEeeeeeCC
Q 005717 101 RVDIAALGTFEMGAKLLDTLINTT-FEGLSGNFHL-VNGQLEPSAFEIFNVIGTSERVIGYWTKE 163 (681)
Q Consensus 101 ~~~~~~~~~~~~G~~l~~~l~~~~-f~GltG~i~F-~~G~~~~~~~~I~n~~~~~~~~vG~W~~~ 163 (681)
.++..+.++|.+++ |+|++|++.| .+|++.. .+.|+++++++++.||.|++.
T Consensus 310 ----------~~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~~-~~~i~~~~~g~~~~v~~~~~~ 363 (366)
T 3td9_A 310 ----------FDREKIAEEIRKTRNFNGASGIINIDENGDAIK-SVVVNIVKNGSVDFEAVINPD 363 (366)
T ss_dssp ----------CCHHHHHHHHTTCCSEEETTEEECBCTTSCBCC-CEEEEEEETTEEEEEEEECGG
T ss_pred ----------CCHHHHHHHHHhCCCCcccceeeEECCCCCccC-ceEEEEEECCEEEEEEecChh
Confidence 25689999999998 9999999999 7898874 599999998889999999874
No 54
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.78 E-value=4.7e-08 Score=101.15 Aligned_cols=213 Identities=10% Similarity=0.030 Sum_probs=142.2
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEe-E
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGD-T 273 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~-~ 273 (681)
++||||+....+ |+... ..-.++++.|++++| ++++++.. .+|++++..|..|++|+++.+ .
T Consensus 4 ~~l~iG~~p~~~--p~~~~-----------~~~~~l~~~l~k~lG--~~ve~~~~--~~~~~~i~al~~G~vDi~~~~~~ 66 (310)
T 3n5l_A 4 PVINFGIISTES--SQNLK-----------SIWEPFLKDMSQQTG--YQVKAFFA--PDYAGIIQGMRFDKVDIAWYGNK 66 (310)
T ss_dssp CEEEEEECCSSC--HHHHH-----------HHHHHHHHHHHHHHS--SEEEEECC--SSHHHHHHHHHTTSCSEEECCHH
T ss_pred cEEEEEEecCCC--HHHHH-----------HHHHHHHHHHHHHhC--CCEEEEeC--CCHHHHHHHHHcCCCCEEEECcH
Confidence 579999987433 33211 112589999999999 55777765 589999999999999999754 2
Q ss_pred EEeec--ccccccccc-------ceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCC
Q 005717 274 TIVAN--RSTFVDFTL-------PYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTE 344 (681)
Q Consensus 274 ~it~~--R~~~vdFT~-------P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~ 344 (681)
..... |.....|.. |++. .+++|++.
T Consensus 67 ~~~~~~~~~~~~~~a~~~~~~g~~~~~--~~lvv~~d------------------------------------------- 101 (310)
T 3n5l_A 67 AAMEAVDRAHGEIFAQTVAASGAPGYW--SLLIANKD------------------------------------------- 101 (310)
T ss_dssp HHHHHHHHSCEEEEEEEEETTCCSEEE--EEEEEETT-------------------------------------------
T ss_pred HHHHHHHhcCCeEEEEEeccCCCcceE--EEEEEECC-------------------------------------------
Confidence 22222 222333432 3222 34555432
Q ss_pred CCCCCCCchhhHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHh--CC
Q 005717 345 FRGPPQHQIGTIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQK--NG 422 (681)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~--~~ 422 (681)
.+|++++||.+ .+
T Consensus 102 -----------------------------------------------------------------s~i~sl~DL~~~~kg 116 (310)
T 3n5l_A 102 -----------------------------------------------------------------SKIDSLEDMLANAKS 116 (310)
T ss_dssp -----------------------------------------------------------------CSCCSHHHHHHTGGG
T ss_pred -----------------------------------------------------------------CCCCCHHHHhhhcCC
Confidence 15899999943 26
Q ss_pred CeEEEe-cChhH----HHH-HhhhcCCccc---cccccCChhHHHHHHccCcceEEecchhhHHHHHhhc---CCceEEE
Q 005717 423 YFVGYQ-TNSFV----KDL-LTKKLNFNET---RLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASY---CSRYMMV 490 (681)
Q Consensus 423 ~~vg~~-~~s~~----~~~-l~~~~~~~~~---~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~---c~~l~~v 490 (681)
.++++. .++.. ..+ +.+..+.+.. +.+.+.+.++...+|.+|++|+.+.+.+.+..+.++. ..++.++
T Consensus 117 k~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g~~~~~~~al~~G~vDa~~~~~~~~~~~~~~~~~~~~~lrvl 196 (310)
T 3n5l_A 117 LTFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNSSHEVNALAVANKQVDVATFNTEGMERLELTQPEKARQLKVI 196 (310)
T ss_dssp CEEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEECCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCHHHHTTEEEE
T ss_pred CEEEecCCCccHhHHHHHHHHHHHcCCChHHhccccccCCHHHHHHHHHcCCccEEEecchhHHHHHHhCccchhCEEEE
Confidence 688863 33322 221 2133343321 2233456678899999999999999988888877764 1367776
Q ss_pred CcccccCCcEEEecCCCC--ChHHHHHHHHhhccCccHHHHHHHHHc
Q 005717 491 GPTYRTDGFGFAFPLGSP--LVPYISRAILKVTEDKEKMENIEKALG 535 (681)
Q Consensus 491 ~~~~~~~~~~~~~~k~sp--l~~~in~~Il~l~e~~G~l~~i~~kw~ 535 (681)
........++++++++-| +++.++++|.++.++ |...++.+++-
T Consensus 197 ~~s~~~p~~~i~~~~~~~~~l~~~l~~al~~~~~d-~~~~~~l~~~g 242 (310)
T 3n5l_A 197 WKSPLIPGDPLVWRNNLSDEQKNKLRDFFFKYGAN-AEQKKVLADLQ 242 (310)
T ss_dssp EEEEEEECCEEEEETTSCHHHHHHHHHHHHHCCCS-HHHHHHHHHTT
T ss_pred EECCCCCCCcEEEECCCCHHHHHHHHHHHHhcCCC-hhHHHHHHhcC
Confidence 554334457899999954 999999999999999 99998888864
No 55
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.72 E-value=4.4e-08 Score=95.26 Aligned_cols=181 Identities=8% Similarity=0.064 Sum_probs=132.8
Q ss_pred eeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEEEeec------cccccccccceeecce
Q 005717 221 TQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTTIVAN------RSTFVDFTLPYSESGV 294 (681)
Q Consensus 221 ~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~it~~------R~~~vdFT~P~~~~~~ 294 (681)
.+++|+.--|.+.+. | +++++... ..+++.+..|.+|++|+++.+++.+++ |...+||+.||+.+.-
T Consensus 28 ~~yeGlatgl~~~f~---g--i~~~i~~m--rg~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~yYv~~h 100 (231)
T 2ozz_A 28 RLYEGLASGLKAQFD---G--IPFYYAHM--RGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHTYVGEH 100 (231)
T ss_dssp HHHHHHHHHHHHTTT---T--SCEEEEEC--SCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTSSSCCE
T ss_pred hhhhHHHHHHHHHhc---C--CcEEEEEc--cChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCCccccCe
Confidence 368898888887774 6 55777765 479999999999999999999999999 9999999999998777
Q ss_pred EEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCchhhHHHHHHHHHhccCcccccc
Q 005717 295 SMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQIGTIFWFSFSTLVFAHRERVVN 374 (681)
Q Consensus 295 ~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s 374 (681)
.+++++.....
T Consensus 101 ~li~~~~~~~~--------------------------------------------------------------------- 111 (231)
T 2ozz_A 101 QLICRKGESGN--------------------------------------------------------------------- 111 (231)
T ss_dssp EEEEETTCGGG---------------------------------------------------------------------
T ss_pred EEEEeCCCccc---------------------------------------------------------------------
Confidence 78887664211
Q ss_pred cchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecChhHHHHHhhhcCCcccccccc-CC
Q 005717 375 NLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNSFVKDLLTKKLNFNETRLKNY-TT 453 (681)
Q Consensus 375 ~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~-~~ 453 (681)
| .+||+..||.-+..+.+ ..+...++..+ .+
T Consensus 112 -------------------------------------i----------krVGvd~gS~dq~~lt~-~~~~g~~Ve~ve~~ 143 (231)
T 2ozz_A 112 -------------------------------------V----------KRVGLDSRSADQKIMTD-VFFGDSDVERVDLS 143 (231)
T ss_dssp -------------------------------------C----------CEEEECTTCHHHHHHHH-HHHTTSCCEEEECC
T ss_pred -------------------------------------c----------EEEEecCCChhHHHHHh-hhcCCCeEEEEECC
Confidence 2 57999999998888844 33344556677 78
Q ss_pred hhHHHHHHccCcceEEec--chhhHHHHHhhcCCceEEE--Cc---ccccCCcEEEecCCCC-ChHHHHHHHHhhccCcc
Q 005717 454 SEDYHDALSNGEVAAIFD--EIPYIKIFLASYCSRYMMV--GP---TYRTDGFGFAFPLGSP-LVPYISRAILKVTEDKE 525 (681)
Q Consensus 454 ~~~~~~~l~~g~~~a~i~--e~~~~~~~~~~~c~~l~~v--~~---~~~~~~~~~~~~k~sp-l~~~in~~Il~l~e~~G 525 (681)
..++..++.+|++||++. +.+... ... ++... .. ........++++||++ +++.+|++|.. .
T Consensus 144 y~~~i~~L~~G~IDA~Iwn~d~~~a~----~~~-~l~~~~l~~~~~~~~~~eavI~v~k~n~~L~~~ln~~I~~-----~ 213 (231)
T 2ozz_A 144 YHESLQRIVKGDVDAVIWNVVAENEL----TML-GLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRAVVDK-----H 213 (231)
T ss_dssp HHHHHHHHHHTSCCEEEEEC-CHHHH----HHT-TEEEEECCSCHHHHHTTCEEEEEETTCHHHHHHHHHHCCH-----H
T ss_pred HHHHHHHHHcCCccEEEEcCcchhhh----cCC-CcceeccccccccccCCceEEEEECCCHHHHHHHHHHhHH-----H
Confidence 899999999999999999 655544 222 33322 22 2344566689999975 88888776543 3
Q ss_pred HHHHHHHHHc
Q 005717 526 KMENIEKALG 535 (681)
Q Consensus 526 ~l~~i~~kw~ 535 (681)
.+..+.++-.
T Consensus 214 ~v~~~Q~~V~ 223 (231)
T 2ozz_A 214 ALLAHQQRVV 223 (231)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555544
No 56
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=98.66 E-value=2.3e-07 Score=96.31 Aligned_cols=124 Identities=12% Similarity=0.085 Sum_probs=87.4
Q ss_pred CCCCHHHHHh--CCCeEEE-ecChhH----HHH-HhhhcCCcccc--ccccCChhHHHHHHccCcceEEecchhhHHHHH
Q 005717 411 SFTDVKDIQK--NGYFVGY-QTNSFV----KDL-LTKKLNFNETR--LKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFL 480 (681)
Q Consensus 411 ~i~s~~dL~~--~~~~vg~-~~~s~~----~~~-l~~~~~~~~~~--~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~ 480 (681)
+|++++||.+ .+.++++ ..++.. ... +.+..+.+... .+.+.+..+...+|.+|++|+.+.+.+.+..+.
T Consensus 113 ~i~sl~DL~~~~kgk~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~~~~~a~~al~~G~vDa~~~~~~~~~~~~ 192 (321)
T 3p7i_A 113 PINNLNDLLAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVANKQVDVATNNTENLDKLK 192 (321)
T ss_dssp SCCSHHHHHHTGGGCEEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEECCHHHHHHHHHTTSSSEEEEEHHHHHTHH
T ss_pred CCCCHHHHHhhcCCCEEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecCCHHHHHHHHHCCCceEEEechHHHHHHH
Confidence 6999999942 2567885 333322 122 21333443322 223556778899999999999999988887777
Q ss_pred hhc---CCceEEECcccccCCcEEEecCCCC--ChHHHHHHHHhhccCccHHHHHHHHHc
Q 005717 481 ASY---CSRYMMVGPTYRTDGFGFAFPLGSP--LVPYISRAILKVTEDKEKMENIEKALG 535 (681)
Q Consensus 481 ~~~---c~~l~~v~~~~~~~~~~~~~~k~sp--l~~~in~~Il~l~e~~G~l~~i~~kw~ 535 (681)
++. ..++.++........++++++|+-| +++.|+.+|.++.++ |...++.+++-
T Consensus 193 ~~~p~~~~~lrvl~~s~~~p~~~i~~~k~~~~~l~~~l~~aL~~~~~d-~~~~~~l~~~g 251 (321)
T 3p7i_A 193 TSAPEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKT-PEEKAVLERLG 251 (321)
T ss_dssp HHCHHHHTTEEEEEECSCBCCCEEEEETTSCHHHHHHHHHHHHHTTCS-HHHHHHHHHHT
T ss_pred HhCcchhccEEEEEEcCCCCCCceeeeCCCCHHHHHHHHHHHHhcCCC-HHHHHHHHhcC
Confidence 653 2367777654444567899999954 999999999999999 99988887764
No 57
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=98.64 E-value=1.3e-07 Score=100.20 Aligned_cols=109 Identities=14% Similarity=0.218 Sum_probs=91.0
Q ss_pred cCccceEEEEEecCC--ChhHHHHHHHHHhh-cCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcccCCcccccCCCCCC
Q 005717 25 ESMQGVLGLRPYIPS--SKKLEHFKLRWIKS-ADKPDGSTGGSNLFGLWAYDTVWAIAMAVERAGIENSSFLKSNTSKSR 101 (681)
Q Consensus 25 ~~~~Gvlg~~~~~~~--~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~aYDav~~lA~Al~~~~~~~~~~~~~~~~~~~ 101 (681)
...+|++...++.+. .+..++|.++|+++ .. .++.++..+|||++++++|+++++..
T Consensus 251 ~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-------~p~~~~~~~yda~~~~~~al~~~g~~------------- 310 (375)
T 4evq_A 251 PAGDGIKTVLHYVSDLDNAENQAFVKSFEAAYKI-------PPDVFAVQGWDAGQLLDAGVKAVGGD------------- 310 (375)
T ss_dssp GGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHSS-------CCCHHHHHHHHHHHHHHHHHHHTTTC-------------
T ss_pred hhcCCeEEeeccCCCCCCHHHHHHHHHHHHHHCC-------CCcHHHHHHHHHHHHHHHHHHHhCCC-------------
Confidence 468899988877653 47889999999876 43 45679999999999999999987421
Q ss_pred CcccccCCCcchHHHHHHHhccceecceeeEEE-eCCcccCccEEEEEeeeCCeeEeeeeeC
Q 005717 102 VDIAALGTFEMGAKLLDTLINTTFEGLSGNFHL-VNGQLEPSAFEIFNVIGTSERVIGYWTK 162 (681)
Q Consensus 102 ~~~~~~~~~~~G~~l~~~l~~~~f~GltG~i~F-~~G~~~~~~~~I~n~~~~~~~~vG~W~~ 162 (681)
+.++..|.++|++++|+|++|++.| .+|++. ..+.|+++++++++.||.+-+
T Consensus 311 --------~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~ 363 (375)
T 4evq_A 311 --------VAKRKELNAAMAAASFASPRGPFKLSAAHNPV-QNFYLRELKGGKSVNLGLAAP 363 (375)
T ss_dssp --------TTCHHHHHHHHHTCEEEETTEEEEBCTTSCBC-CCEEEEEEETTEEEEEEEEEC
T ss_pred --------CCCHHHHHHHHhcCCcccCCcceeECCCCCcc-ccEEEEEEECCCcEEeeehhh
Confidence 2356899999999999999999999 788886 589999999999999998864
No 58
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=98.62 E-value=6.5e-08 Score=101.93 Aligned_cols=108 Identities=22% Similarity=0.251 Sum_probs=85.4
Q ss_pred cCccceEEEEEecCC--ChhHHHHHHHHHhh-cCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcccCCcccccCCCCCC
Q 005717 25 ESMQGVLGLRPYIPS--SKKLEHFKLRWIKS-ADKPDGSTGGSNLFGLWAYDTVWAIAMAVERAGIENSSFLKSNTSKSR 101 (681)
Q Consensus 25 ~~~~Gvlg~~~~~~~--~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~aYDav~~lA~Al~~~~~~~~~~~~~~~~~~~ 101 (681)
...+|++...++.+. .+..++|.++|+++ .. .++.+++.+|||++++|.|+++++.
T Consensus 240 ~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-------~p~~~~~~~yda~~~~~~al~~ag~-------------- 298 (358)
T 3hut_A 240 PAVEGVRLATAFVLGASDPVVVEFVSAYETLYGA-------IPTLFAAHGYDAVGIMLAAVGRAGP-------------- 298 (358)
T ss_dssp GGGTTCEEEESCCTTCCSHHHHHHHHHHHHHHSS-------CCCHHHHHHHHHHHHHHHHHHHHCT--------------
T ss_pred HhhCCeEEEeccCCCCCCHHHHHHHHHHHHHHCC-------CCCHHHHHHHHHHHHHHHHHHHhCC--------------
Confidence 468899988877653 56789999999876 33 4667999999999999999999752
Q ss_pred CcccccCCCcchHH-HHHHHhcc-ceecceeeEEE-eCCcccCccEEEEEeeeCCeeEeeeeeC
Q 005717 102 VDIAALGTFEMGAK-LLDTLINT-TFEGLSGNFHL-VNGQLEPSAFEIFNVIGTSERVIGYWTK 162 (681)
Q Consensus 102 ~~~~~~~~~~~G~~-l~~~l~~~-~f~GltG~i~F-~~G~~~~~~~~I~n~~~~~~~~vG~W~~ 162 (681)
.++.. +.++|.++ +|+|++|++.| .+|++....+.|++++++.++.+....+
T Consensus 299 ---------~~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~G~~~~~~~~~~ 353 (358)
T 3hut_A 299 ---------EVTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDFRVIDREGH 353 (358)
T ss_dssp ---------TCCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEETTEEEEC-----
T ss_pred ---------CChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEECCEEEEeccccc
Confidence 13467 99999999 99999999999 7898856788999999777777765544
No 59
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=98.61 E-value=7.5e-08 Score=100.81 Aligned_cols=103 Identities=19% Similarity=0.214 Sum_probs=82.6
Q ss_pred cCccceEEEEEec-CCChhHHHHHHHHHhh-cCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcccCCcccccCCCCCCC
Q 005717 25 ESMQGVLGLRPYI-PSSKKLEHFKLRWIKS-ADKPDGSTGGSNLFGLWAYDTVWAIAMAVERAGIENSSFLKSNTSKSRV 102 (681)
Q Consensus 25 ~~~~Gvlg~~~~~-~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~aYDav~~lA~Al~~~~~~~~~~~~~~~~~~~~ 102 (681)
...+|+++..++. +.++..++|.++|+++ .. .++.++..+|||++++|+|+++++.
T Consensus 239 ~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~~-------~~~~~~~~~yda~~~~~~al~~~g~--------------- 296 (346)
T 1usg_A 239 DAAEGMLVTMPKRYDQDPANQGIVDALKADKKD-------PSGPYVWITYAAVQSLATALERTGS--------------- 296 (346)
T ss_dssp GGGTTCEEEECCCGGGSGGGHHHHHHHHHTTCC-------CCCHHHHHHHHHHHHHHHHHHHHCC---------------
T ss_pred HhhCCeEEecCCCCCCCHHHHHHHHHHHHHhCC-------CCchhHHHHHHHHHHHHHHHHHhCC---------------
Confidence 4578988887653 2456789999999875 22 3567899999999999999999741
Q ss_pred cccccCCCcchHHHHHHHhccceecceeeEEE-eCCcccCccEEEEEee-eCCeeEe
Q 005717 103 DIAALGTFEMGAKLLDTLINTTFEGLSGNFHL-VNGQLEPSAFEIFNVI-GTSERVI 157 (681)
Q Consensus 103 ~~~~~~~~~~G~~l~~~l~~~~f~GltG~i~F-~~G~~~~~~~~I~n~~-~~~~~~v 157 (681)
.++..|.++|.+++|+|++|++.| .+|++....|.|++++ ++.++.|
T Consensus 297 --------~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~~~~~ 345 (346)
T 1usg_A 297 --------DEPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTKA 345 (346)
T ss_dssp --------CCHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEEEC
T ss_pred --------CCHHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCEEEec
Confidence 246789999999999999999999 7899887789999998 6555544
No 60
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=98.60 E-value=2.1e-07 Score=99.20 Aligned_cols=114 Identities=16% Similarity=0.133 Sum_probs=89.5
Q ss_pred CccceEEEEE-e-cCCChhHHHHHHHHHhh-cCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcccCCcccccCCCCCCC
Q 005717 26 SMQGVLGLRP-Y-IPSSKKLEHFKLRWIKS-ADKPDGSTGGSNLFGLWAYDTVWAIAMAVERAGIENSSFLKSNTSKSRV 102 (681)
Q Consensus 26 ~~~Gvlg~~~-~-~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~aYDav~~lA~Al~~~~~~~~~~~~~~~~~~~~ 102 (681)
..+|++.... + .+.++..++|.++|+++ .. .++.+++.+|||++++|+|+++++.
T Consensus 248 ~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-------~p~~~~~~~Yda~~~~a~Al~~ag~--------------- 305 (387)
T 3i45_A 248 APEGWIVTGYPWYDIDTAPHRAFVEAYRARWKE-------DPFVGSLVGYNTLTAMAVAFEKAGG--------------- 305 (387)
T ss_dssp CCSSCEEEECCGGGCCCHHHHHHHHHHHHHHSS-------CCCHHHHHHHHHHHHHHHHHHHHTS---------------
T ss_pred ccCceEEecccccCCCCHHHHHHHHHHHHHHCC-------CCCcHHHHHHHHHHHHHHHHHHhCC---------------
Confidence 4688776633 2 24678899999999876 33 3567899999999999999999851
Q ss_pred cccccCCCcchHHHHHHHhccceecceeeEEE-eCCcccCccEEEEEee-eCCeeEeeeeeCCCCcccc
Q 005717 103 DIAALGTFEMGAKLLDTLINTTFEGLSGNFHL-VNGQLEPSAFEIFNVI-GTSERVIGYWTKEKELLSE 169 (681)
Q Consensus 103 ~~~~~~~~~~G~~l~~~l~~~~f~GltG~i~F-~~G~~~~~~~~I~n~~-~~~~~~vG~W~~~~gl~~~ 169 (681)
.++..|.++|++++|+|++|+++| .++++......|.+++ .++...++.|+...|....
T Consensus 306 --------~~~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~g~~~i~~w~~~~~~~~~ 366 (387)
T 3i45_A 306 --------TESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGKGVMVDWRYVDGGSVL 366 (387)
T ss_dssp --------CCHHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETTEEEEEEEEEECGGGGS
T ss_pred --------CCHHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEeeCCceeEEeeEEeCchhcC
Confidence 256899999999999999999999 4455555677788876 6678999999987776543
No 61
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=98.59 E-value=6.3e-08 Score=101.92 Aligned_cols=109 Identities=16% Similarity=0.200 Sum_probs=87.2
Q ss_pred cCccceEEEEEecC-CChhHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcccCCcccccCCCCCCCc
Q 005717 25 ESMQGVLGLRPYIP-SSKKLEHFKLRWIKSADKPDGSTGGSNLFGLWAYDTVWAIAMAVERAGIENSSFLKSNTSKSRVD 103 (681)
Q Consensus 25 ~~~~Gvlg~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~aYDav~~lA~Al~~~~~~~~~~~~~~~~~~~~~ 103 (681)
...+|++...++.+ ..+..++|.++|+++.. +++.++..+|||++++|+|+++++.
T Consensus 239 ~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~~-------~p~~~~~~~yda~~~~~~al~~ag~---------------- 295 (356)
T 3ipc_A 239 DAVEGTLNTFGPDPTLRPENKELVEKFKAAGF-------NPEAYTLYSYAAMQAIAGAAKAAGS---------------- 295 (356)
T ss_dssp GGGTTCEEEESCCGGGCGGGHHHHHHHHHTTC-------CCCTTHHHHHHHHHHHHHHHHHHTC----------------
T ss_pred HHhCCEEEEecCCCCCChhHHHHHHHHHHcCC-------CcchhHHHHHHHHHHHHHHHHHhCC----------------
Confidence 45788888776654 34678999999987511 3556899999999999999999752
Q ss_pred ccccCCCcchHHHHHHHhccceecceeeEEE-eCCcccCccEEEEEeee---CCeeEeeeeeCC
Q 005717 104 IAALGTFEMGAKLLDTLINTTFEGLSGNFHL-VNGQLEPSAFEIFNVIG---TSERVIGYWTKE 163 (681)
Q Consensus 104 ~~~~~~~~~G~~l~~~l~~~~f~GltG~i~F-~~G~~~~~~~~I~n~~~---~~~~~vG~W~~~ 163 (681)
.++..+.++|.+++|+|++|++.| .+|++....+.|++++. +.|+.+..|.+.
T Consensus 296 -------~~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~~ 352 (356)
T 3ipc_A 296 -------VEPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSHH 352 (356)
T ss_dssp -------CCHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSSEEEEEC----
T ss_pred -------CCHHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCcEEEEeccccc
Confidence 246899999999999999999999 88999888999999995 679999988653
No 62
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=98.48 E-value=3.4e-07 Score=97.16 Aligned_cols=100 Identities=17% Similarity=0.233 Sum_probs=77.7
Q ss_pred cCccceEEEEEec---CCChhHHHHHHHHHhh-cCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcccCCcccccCCCCC
Q 005717 25 ESMQGVLGLRPYI---PSSKKLEHFKLRWIKS-ADKPDGSTGGSNLFGLWAYDTVWAIAMAVERAGIENSSFLKSNTSKS 100 (681)
Q Consensus 25 ~~~~Gvlg~~~~~---~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~aYDav~~lA~Al~~~~~~~~~~~~~~~~~~ 100 (681)
....|+.+...+. +.++..++|.++|+++ .. .++.+++.+|||++++++|+++++.
T Consensus 245 ~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~g~-------~p~~~a~~~Yda~~~l~~Al~~ag~------------- 304 (374)
T 3n0x_A 245 KRLPGMEGATYYYYDIPKNPINEWLVTEHQKRFNA-------PPDFFTAGGFSAAMAVVTAVQKAKS------------- 304 (374)
T ss_dssp GGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHHSS-------CCCHHHHHHHHHHHHHHHHHHHHTS-------------
T ss_pred hhhcCccccceeccCCCCCHHHHHHHHHHHHHHCC-------CCChhHHHHHHHHHHHHHHHHHhCC-------------
Confidence 3456777765543 4567789999999876 43 4677999999999999999999852
Q ss_pred CCcccccCCCcchHHHHHHHhccceecceeeEEE-eCCcccCccEEEEEeeeCCe
Q 005717 101 RVDIAALGTFEMGAKLLDTLINTTFEGLSGNFHL-VNGQLEPSAFEIFNVIGTSE 154 (681)
Q Consensus 101 ~~~~~~~~~~~~G~~l~~~l~~~~f~GltG~i~F-~~G~~~~~~~~I~n~~~~~~ 154 (681)
.++..|.++|.+++|+|++|.++| .+++.....+.|++++.++.
T Consensus 305 ----------~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~~ 349 (374)
T 3n0x_A 305 ----------TDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKVDPA 349 (374)
T ss_dssp ----------CCHHHHHHHHTTCEEEETTEEEEECTTTCBEECCEEEEEEECCTT
T ss_pred ----------CCHHHHHHHHhcCCccCCCCCEEECcccCccccceEEEEEEeCCC
Confidence 246899999999999999999999 44444446889999986544
No 63
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=98.45 E-value=6.3e-07 Score=96.64 Aligned_cols=115 Identities=17% Similarity=0.133 Sum_probs=82.9
Q ss_pred cCccceEEEEEe-cCCChhHHHHHHHHHhh-cCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcccCCcccccCCCCCCC
Q 005717 25 ESMQGVLGLRPY-IPSSKKLEHFKLRWIKS-ADKPDGSTGGSNLFGLWAYDTVWAIAMAVERAGIENSSFLKSNTSKSRV 102 (681)
Q Consensus 25 ~~~~Gvlg~~~~-~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~aYDav~~lA~Al~~~~~~~~~~~~~~~~~~~~ 102 (681)
...+|++....+ .+.++..++|.++|+++ .+.| .+.++..+|||++++++|++++....
T Consensus 266 ~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~g~~p------~~~~a~~~Yda~~~~~~a~~~a~~~~------------- 326 (419)
T 3h5l_A 266 DNSVGVTYATVLGTLQDEMGDAFAKAYKERYGDLS------STASGCQTYSALYAYSIAAALAGGPG------------- 326 (419)
T ss_dssp GGGTTCEEEESSCCCSSHHHHHHHHHHHHHHCTTS------CHHHHHHHHHHHHHHHHHHHHTTSCC-------------
T ss_pred hhcCceEEeecCCCCCCHHHHHHHHHHHHHhCCCC------CcchhHHHHHHHHHHHHHHHHhcCCc-------------
Confidence 457888766544 34567789999999887 3311 23589999999999999999875311
Q ss_pred cccccCCCcchHHHHHHHhccceecceeeEEE-eCCccc------------CccEEEEEeeeCCeeEeeeee
Q 005717 103 DIAALGTFEMGAKLLDTLINTTFEGLSGNFHL-VNGQLE------------PSAFEIFNVIGTSERVIGYWT 161 (681)
Q Consensus 103 ~~~~~~~~~~G~~l~~~l~~~~f~GltG~i~F-~~G~~~------------~~~~~I~n~~~~~~~~vG~W~ 161 (681)
..+.+.++..+.++|.+++|+|++|.++| .+|+.. ...+.|+++++++++.+-.|-
T Consensus 327 ---~~g~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~~~~~~~~~~~~~~~~~~~i~q~q~g~~~~~~V~P 395 (419)
T 3h5l_A 327 ---APYDDVQNKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTETNDPSLGMPHIFSQIFDKAEDGVLIAP 395 (419)
T ss_dssp ---CTTCHHHHHHHHHHHHHCEEEETTEEEEBCTTTCBBCEETTTCSCTTSSEECEEEECCCTTSCCEEEES
T ss_pred ---cCCCccCHHHHHHHHHhCCcccCceEEEECCCCCccccccCccCCccccCCceEEEeeCCceeeEEECC
Confidence 11123578899999999999999999999 788743 234668888877663333464
No 64
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=98.41 E-value=9.7e-07 Score=93.16 Aligned_cols=124 Identities=16% Similarity=0.214 Sum_probs=89.7
Q ss_pred CeEEEecCCccc--cCCccccccCccceEEEEEecC--CChhHHHHHHHHHhh--cCCCCCCCCCCchhHHHHHHHHHHH
Q 005717 5 GYAWIATQGLST--LLDPVKDMESMQGVLGLRPYIP--SSKKLEHFKLRWIKS--ADKPDGSTGGSNLFGLWAYDTVWAI 78 (681)
Q Consensus 5 ~y~WI~t~~~~~--~~~~~~~~~~~~Gvlg~~~~~~--~~~~~~~f~~~~~~~--~~~~~~~~~~~~~~~~~aYDav~~l 78 (681)
++.|+.+++..+ .+. ..-...+|++...++.+ .++..++|.++| ++ .. .++.++..+|||++++
T Consensus 223 ~v~~~~~~~~~~~~~~~--~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~-------~p~~~~~~~yda~~~~ 292 (368)
T 4eyg_A 223 GIKVIGPGDVMDDDLLN--SMGDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKEFGQ-------RPGFMAVGGYDGIHLV 292 (368)
T ss_dssp TCEEEEETTTTCHHHHT--TCCGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHHHSS-------CCCHHHHHHHHHHHHH
T ss_pred CceEEecCcccCHHHHH--hhhhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHhCCC-------CCChHHHHHHHHHHHH
Confidence 367888875322 222 12345789888877754 357889999999 54 22 4677999999999999
Q ss_pred HHHHHHHcccCCcccccCCCCCCCcccccCCCcchHHHHHHHhccceecceeeEEEe--CCcccCccEEEEEee--eCCe
Q 005717 79 AMAVERAGIENSSFLKSNTSKSRVDIAALGTFEMGAKLLDTLINTTFEGLSGNFHLV--NGQLEPSAFEIFNVI--GTSE 154 (681)
Q Consensus 79 A~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~~~l~~~~f~GltG~i~F~--~G~~~~~~~~I~n~~--~~~~ 154 (681)
|+|++++.. +.++..|.++|++++|+|++|++.|+ +|+. ...+.|.+++ ++.+
T Consensus 293 ~~al~~~g~----------------------~~~~~~l~~al~~~~~~g~~G~i~f~~~~~~~-~~~~~i~~~~~~~G~~ 349 (368)
T 4eyg_A 293 FEALKKTGG----------------------KADGDSLIAAMKGMKWESPRGPISIDPETRDI-VQNIYIRKVEKVDGEL 349 (368)
T ss_dssp HHHHHHTTT----------------------CCSHHHHHHHHTTCEEEETTEEEEECTTTCCE-EEEEEEEEEEEETTEE
T ss_pred HHHHHHhCC----------------------CCCHHHHHHHHHcCCcccCCCCeEECcccCCc-ccceEEEEEEecCCeE
Confidence 999999741 12568999999999999999999994 4554 4678899887 5555
Q ss_pred eE--eeeee
Q 005717 155 RV--IGYWT 161 (681)
Q Consensus 155 ~~--vG~W~ 161 (681)
+. +|.+.
T Consensus 350 ~~v~~~~~~ 358 (368)
T 4eyg_A 350 YNIEFAKFD 358 (368)
T ss_dssp EEEEEEEEE
T ss_pred EEEEeeccc
Confidence 43 45554
No 65
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=98.36 E-value=3.3e-07 Score=97.80 Aligned_cols=122 Identities=7% Similarity=-0.032 Sum_probs=92.8
Q ss_pred cCccceEEEEEecCC--ChhHHHHHHHHHhh-cCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcccCCcccccCCCCCC
Q 005717 25 ESMQGVLGLRPYIPS--SKKLEHFKLRWIKS-ADKPDGSTGGSNLFGLWAYDTVWAIAMAVERAGIENSSFLKSNTSKSR 101 (681)
Q Consensus 25 ~~~~Gvlg~~~~~~~--~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~aYDav~~lA~Al~~~~~~~~~~~~~~~~~~~ 101 (681)
...+|++...++.+. ++..++|.++|+++ ...|. ...+.++..+|||+++++.|++++.....
T Consensus 244 ~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~p~---~~~~~~~~~~yda~~~~~~al~~ag~~~~----------- 309 (392)
T 3lkb_A 244 DAAEGFLWATSFYMAHEDTPGIRLQKEIGRKYGRPEN---FIESVNYTNGMLAAAIAVEAIRRAQERFK----------- 309 (392)
T ss_dssp GGGTTCEEEESBCCTTSCCHHHHHHHHHHHHTTCCHH---HHTCHHHHHHHHHHHHHHHHHHHHHHHHS-----------
T ss_pred hhhcCeEEEEeecCCCCCchhHHHHHHHHHHhCCCcc---cccchhHHHHHHHHHHHHHHHHHhhccCC-----------
Confidence 358899888876443 34678899999876 32110 00123478999999999999999863210
Q ss_pred CcccccCCCcchHHHHHHHhccc----ee-------cceeeEEE-eCCcccCccEEEEEeeeCCeeEeeeeeCCCCccc
Q 005717 102 VDIAALGTFEMGAKLLDTLINTT----FE-------GLSGNFHL-VNGQLEPSAFEIFNVIGTSERVIGYWTKEKELLS 168 (681)
Q Consensus 102 ~~~~~~~~~~~G~~l~~~l~~~~----f~-------GltG~i~F-~~G~~~~~~~~I~n~~~~~~~~vG~W~~~~gl~~ 168 (681)
+.++..+.++|.+++ |+ |++|++.| .+|++....+.|+++++++++.||.|....++..
T Consensus 310 --------~~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~~~~i~~~~~g~~~~v~~w~~~~~~~~ 380 (392)
T 3lkb_A 310 --------RITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILEAKGGRFVPVTEPFTSALFRK 380 (392)
T ss_dssp --------SCCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEEEEETTEEEECSCCBCCHHHHH
T ss_pred --------CCCHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcccEEEEEEeCCEEEEeccccchhHHHh
Confidence 235689999999997 98 99999999 6787766788999999999999999988776653
No 66
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=98.33 E-value=1.5e-06 Score=92.51 Aligned_cols=108 Identities=13% Similarity=0.076 Sum_probs=81.7
Q ss_pred CccceEEEEEecC--CChhHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcccCCcccccCCCCCCCc
Q 005717 26 SMQGVLGLRPYIP--SSKKLEHFKLRWIKSADKPDGSTGGSNLFGLWAYDTVWAIAMAVERAGIENSSFLKSNTSKSRVD 103 (681)
Q Consensus 26 ~~~Gvlg~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~aYDav~~lA~Al~~~~~~~~~~~~~~~~~~~~~ 103 (681)
.++|+++..++.+ .++..++|.++|+++ +.. ...++.++..+|||++++|+|+++++.
T Consensus 246 ~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~--~g~--~~~~~~~~~~~yda~~~~~~Al~~ag~---------------- 305 (385)
T 1pea_A 246 VAEGQVVVAPYFSSIDTPASRAFVQACHGF--FPE--NATITAWAEAAYWQTLLLGRAAQAAGN---------------- 305 (385)
T ss_dssp HHTTCEEEESCCTTCSSHHHHHHHHHHHTT--SCT--TCCCCHHHHHHHHHHHHHHHHHHHHTS----------------
T ss_pred hhCCeEEecccccccCCHHHHHHHHHHHHH--hCC--CCCCChHHHHHHHHHHHHHHHHHHhCC----------------
Confidence 5789888876653 456789999999875 111 113567899999999999999999751
Q ss_pred ccccCCCcchHHHHHHHhccceecceeeEEE-eCCcccCccEEEEEe-eeCCeeEeeee
Q 005717 104 IAALGTFEMGAKLLDTLINTTFEGLSGNFHL-VNGQLEPSAFEIFNV-IGTSERVIGYW 160 (681)
Q Consensus 104 ~~~~~~~~~G~~l~~~l~~~~f~GltG~i~F-~~G~~~~~~~~I~n~-~~~~~~~vG~W 160 (681)
.++..|.++|.+++|+|++|.+.| .+++.....+.|.++ +++.++.|...
T Consensus 306 -------~~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~~~v~~~ 357 (385)
T 1pea_A 306 -------WRVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQS 357 (385)
T ss_dssp -------CCHHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEEEEEEC
T ss_pred -------CCHHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcEEEeecC
Confidence 146889999999999999999999 545444467788888 56667666443
No 67
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=98.30 E-value=1.5e-06 Score=92.04 Aligned_cols=98 Identities=15% Similarity=0.201 Sum_probs=80.2
Q ss_pred cCccceEEEEEecCC-ChhHHHHHHHHHhh-cCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcccCCcccccCCCCCCC
Q 005717 25 ESMQGVLGLRPYIPS-SKKLEHFKLRWIKS-ADKPDGSTGGSNLFGLWAYDTVWAIAMAVERAGIENSSFLKSNTSKSRV 102 (681)
Q Consensus 25 ~~~~Gvlg~~~~~~~-~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~aYDav~~lA~Al~~~~~~~~~~~~~~~~~~~~ 102 (681)
+..+|++...++.+. ++..++|.++|+++ .. .++.++..+|||++++|+|+++++.
T Consensus 242 ~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g~-------~p~~~a~~~Yda~~~~~~Al~~ag~--------------- 299 (375)
T 3i09_A 242 ETTQGLVLTDSWYWNRDQASRQWAQRYFAKMKK-------MPSSLQAADYSSVTTYLKAVQAAGS--------------- 299 (375)
T ss_dssp HHHTTCEEEESCCTTSSHHHHHHHHHHHHHHSS-------CCCHHHHHHHHHHHHHHHHHHHHTS---------------
T ss_pred hhhCCeeeeeeecCCCCHHHHHHHHHHHHHHCC-------CCcHHHHHHHHHHHHHHHHHHHhCC---------------
Confidence 357888887776554 56789999999876 33 3567999999999999999999851
Q ss_pred cccccCCCcchHHHHHHHhccceecceeeEEE-eCCcccCccEEEEEeeeCC
Q 005717 103 DIAALGTFEMGAKLLDTLINTTFEGLSGNFHL-VNGQLEPSAFEIFNVIGTS 153 (681)
Q Consensus 103 ~~~~~~~~~~G~~l~~~l~~~~f~GltG~i~F-~~G~~~~~~~~I~n~~~~~ 153 (681)
.++..|.++|++++|+|++|.+.| .+|++. ..+.|+++++++
T Consensus 300 --------~~~~~l~~aL~~~~~~~~~G~~~f~~~g~~~-~~~~i~~v~~~~ 342 (375)
T 3i09_A 300 --------TDSDKVMAQLKKMKIDDFYAKGYIRTDGSMI-HDMYLMEVKKPS 342 (375)
T ss_dssp --------CCHHHHHHHHTTSCEESSSCEEEECTTSBEE-CCEEEEEECCGG
T ss_pred --------CCHHHHHHHHhCCCccCCCCceEECCCCCee-eeeEEEEEeccc
Confidence 256899999999999999999999 789987 467799987654
No 68
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=98.16 E-value=3.3e-06 Score=90.10 Aligned_cols=119 Identities=18% Similarity=0.263 Sum_probs=88.9
Q ss_pred cCccc-eEEEEEec-----CCChhHHHHHHHHHhh-c-CCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcccCCcccccC
Q 005717 25 ESMQG-VLGLRPYI-----PSSKKLEHFKLRWIKS-A-DKPDGSTGGSNLFGLWAYDTVWAIAMAVERAGIENSSFLKSN 96 (681)
Q Consensus 25 ~~~~G-vlg~~~~~-----~~~~~~~~f~~~~~~~-~-~~~~~~~~~~~~~~~~aYDav~~lA~Al~~~~~~~~~~~~~~ 96 (681)
...+| ++...++. ...+. .+|.++|+++ . ..| ..+.+++.+|||+++++.|++++...+.
T Consensus 245 ~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~~~~~p-----~~~~~~~~~yda~~~l~~Al~~a~~~g~------ 312 (391)
T 3eaf_A 245 EGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMNGVSED-----QINLRVVQGFVNVWLLIKAIESVTSQDL------ 312 (391)
T ss_dssp GGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHTTCCGG-----GCCHHHHHHHHHHHHHHHHHTTSCHHHH------
T ss_pred hhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHhCCCCc-----ccccHHHHHHHHHHHHHHHHHHHHhcCC------
Confidence 45899 88887766 23344 6799999876 3 211 1347899999999999999998621000
Q ss_pred CCCCCCcccccCCCcchHHHHHHHhcccee--ccee-eEEE-eCCcccCccEEEEEe-eeCCeeEeeeeeCCCCcc
Q 005717 97 TSKSRVDIAALGTFEMGAKLLDTLINTTFE--GLSG-NFHL-VNGQLEPSAFEIFNV-IGTSERVIGYWTKEKELL 167 (681)
Q Consensus 97 ~~~~~~~~~~~~~~~~G~~l~~~l~~~~f~--GltG-~i~F-~~G~~~~~~~~I~n~-~~~~~~~vG~W~~~~gl~ 167 (681)
.+.++..+.++|.+.+|+ |++| ++.| .+|++....+.|+++ +++.++.|+.|.......
T Consensus 313 ------------~~~~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~~i~~~~~~G~~~~v~~~~~~~~~~ 376 (391)
T 3eaf_A 313 ------------QERGGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKLGENGELQLMGKFEAPSQVD 376 (391)
T ss_dssp ------------HHHTHHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEECTTSSEEEEEEECCCTTCC
T ss_pred ------------CCCCHHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEEEEEEEecCCEEEEeeeecCccccc
Confidence 013568899999998999 9999 9999 566666678999999 788899999998655443
No 69
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=98.16 E-value=5.4e-06 Score=86.97 Aligned_cols=101 Identities=19% Similarity=0.252 Sum_probs=77.8
Q ss_pred ccCccceEEEEEecC---CChhHHHHHHHHHhh-cCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcccCCcccccCCCC
Q 005717 24 MESMQGVLGLRPYIP---SSKKLEHFKLRWIKS-ADKPDGSTGGSNLFGLWAYDTVWAIAMAVERAGIENSSFLKSNTSK 99 (681)
Q Consensus 24 ~~~~~Gvlg~~~~~~---~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~aYDav~~lA~Al~~~~~~~~~~~~~~~~~ 99 (681)
.+..+|++....+.+ .++..++|.++|+++ .+ .++.++.++|||++++|.|+++..
T Consensus 242 ~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~-------~p~~~a~~~Yda~~~la~Ai~~a~------------- 301 (353)
T 4gnr_A 242 AEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKYNE-------EPSTFAALAYDSVHLVANAAKGAK------------- 301 (353)
T ss_dssp TTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHHSS-------CCCHHHHHHHHHHHHHHHHHTTCS-------------
T ss_pred hhhhcCccccccccCCCCCCHHHHHHHHHHHHHhCC-------CCChhHHHHHHHHHHHHHHHhcCC-------------
Confidence 345677777765543 346788999999877 43 467799999999999999997532
Q ss_pred CCCcccccCCCcchHHHHHHHhcc-ceecceeeEEE-eCCcccCccEEEEEeeeCCeeEe
Q 005717 100 SRVDIAALGTFEMGAKLLDTLINT-TFEGLSGNFHL-VNGQLEPSAFEIFNVIGTSERVI 157 (681)
Q Consensus 100 ~~~~~~~~~~~~~G~~l~~~l~~~-~f~GltG~i~F-~~G~~~~~~~~I~n~~~~~~~~v 157 (681)
++..+.++|.++ +|+|++|++.| .+|++. ..+.|++++++.++.+
T Consensus 302 ------------~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~v~~Gk~~~~ 348 (353)
T 4gnr_A 302 ------------NSGEIKDNLAXTKDFEGVTGQTSFDADHNTV-KTAYMMTMNNGKVEAA 348 (353)
T ss_dssp ------------SHHHHHHHHHTCCCEEETTEEECCCTTSCCC-CCEEEEEEETTEEEEE
T ss_pred ------------CHHHHHHHHHhcCCCccCceeEEECCCcCCc-CCeEEEEEECCEEEEE
Confidence 236789999988 59999999999 788886 4567888887666554
No 70
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=98.15 E-value=7.5e-06 Score=86.66 Aligned_cols=102 Identities=17% Similarity=0.079 Sum_probs=77.9
Q ss_pred cccCccceEEEEEecCC--ChhHHHHHHHHHhh-cCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcccCCcccccCCCC
Q 005717 23 DMESMQGVLGLRPYIPS--SKKLEHFKLRWIKS-ADKPDGSTGGSNLFGLWAYDTVWAIAMAVERAGIENSSFLKSNTSK 99 (681)
Q Consensus 23 ~~~~~~Gvlg~~~~~~~--~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~aYDav~~lA~Al~~~~~~~~~~~~~~~~~ 99 (681)
.....+|++...++.+. ++..++|.++|+++ ... ..++.++..+|||+++++.|+++...
T Consensus 242 ~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~-----~~~~~~a~~~Yda~~~l~~Ai~~~ag------------ 304 (371)
T 4f06_A 242 IGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGAKL-----DEVTMTSVAAYDGARLIYKMIEATSG------------ 304 (371)
T ss_dssp HCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTCCG-----GGCCHHHHHHHHHHHHHHHHHHHTTT------------
T ss_pred cccccCceEEeeccccCCCChhHHHHHHHHHHhcCCC-----CCccchHHHHHHHHHHHHHHHHHhcC------------
Confidence 34567888888776543 56789999999876 221 13677899999999999999986421
Q ss_pred CCCcccccCCCcchHHHHHHHhccceecceeeEEE-eCCcccCccEEEEEeee
Q 005717 100 SRVDIAALGTFEMGAKLLDTLINTTFEGLSGNFHL-VNGQLEPSAFEIFNVIG 151 (681)
Q Consensus 100 ~~~~~~~~~~~~~G~~l~~~l~~~~f~GltG~i~F-~~G~~~~~~~~I~n~~~ 151 (681)
+.++..+.++|++++|+|++|++.| .+++.....+.|.++++
T Consensus 305 ----------~~d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~~ 347 (371)
T 4f06_A 305 ----------KSDPDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVEK 347 (371)
T ss_dssp ----------SCCHHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEEE
T ss_pred ----------CCCHHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEEe
Confidence 2356889999999999999999999 56665556677877763
No 71
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=98.10 E-value=5.7e-06 Score=87.77 Aligned_cols=105 Identities=16% Similarity=0.179 Sum_probs=82.5
Q ss_pred cCccceEEEEEecCC-ChhHHHHHHHHHhh-cCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcccCCcccccCCCCCCC
Q 005717 25 ESMQGVLGLRPYIPS-SKKLEHFKLRWIKS-ADKPDGSTGGSNLFGLWAYDTVWAIAMAVERAGIENSSFLKSNTSKSRV 102 (681)
Q Consensus 25 ~~~~Gvlg~~~~~~~-~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~aYDav~~lA~Al~~~~~~~~~~~~~~~~~~~~ 102 (681)
..++|++...++.+. ++..++|.++|+++ .. .++.++..+|||++++++|+++++.
T Consensus 245 ~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~g~-------~p~~~~~~~Yda~~~~~~Al~~ag~--------------- 302 (379)
T 3n0w_A 245 RVMQGQEYATSFYWNMDDRTRAFAKRFYAKMGK-------MPTNNQAGGYSAALQYLKAVNAIGS--------------- 302 (379)
T ss_dssp HHHTTCEEEESCCTTSSHHHHHHHHHHHHHHSS-------CCCHHHHHHHHHHHHHHHHHHHHTC---------------
T ss_pred HhhCCeEEEeeecCCCCHHHHHHHHHHHHHHCC-------CCChHHHHHHHHHHHHHHHHHHhCC---------------
Confidence 357888888776554 56789999999876 33 3567999999999999999999851
Q ss_pred cccccCCCcchHHHHHHHhccceecceee-EEE-eCCcccCccEEEEEeeeCCeeEeeeee
Q 005717 103 DIAALGTFEMGAKLLDTLINTTFEGLSGN-FHL-VNGQLEPSAFEIFNVIGTSERVIGYWT 161 (681)
Q Consensus 103 ~~~~~~~~~~G~~l~~~l~~~~f~GltG~-i~F-~~G~~~~~~~~I~n~~~~~~~~vG~W~ 161 (681)
.++..|.++|++++|+|++|. +.| .+|++. ..+.|+++++++..+ +.|+
T Consensus 303 --------~~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~~-~~~~i~~~~~~~~~~-~~~~ 353 (379)
T 3n0w_A 303 --------KDPQKVFAYLKTIKFDDAVTRHGTLRPGGRLV-RDMYLVRAKKPEDQK-GDWD 353 (379)
T ss_dssp --------CCHHHHHHHHTTCCBCSSSCCSBEECTTSBEE-CCEEEEEECCGGGCC-STTC
T ss_pred --------CCHHHHHHHHhcCCccccCCCceeECCCCCcc-cceEEEEEEchhhcc-Cccc
Confidence 256899999999999999886 899 789886 578899998654333 3353
No 72
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=98.08 E-value=6.8e-06 Score=86.18 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=80.6
Q ss_pred cCccceEEEEEe-------c---CCChhHHHHHHHHHhh-cCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcccCCccc
Q 005717 25 ESMQGVLGLRPY-------I---PSSKKLEHFKLRWIKS-ADKPDGSTGGSNLFGLWAYDTVWAIAMAVERAGIENSSFL 93 (681)
Q Consensus 25 ~~~~Gvlg~~~~-------~---~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~aYDav~~lA~Al~~~~~~~~~~~ 93 (681)
...+|++....+ . +..+..++|.++|+++ ... .++.++..+|||++++|+|++++.....
T Consensus 236 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~------~p~~~~~~~yda~~~~~~al~~a~~~~~--- 306 (362)
T 3snr_A 236 KSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKYGPS------SRSQFAGHSYDAFKVLERVVPVALKKAK--- 306 (362)
T ss_dssp GGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHHCTT------CCCHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHhCCC------CCCchhHhHHHHHHHHHHHHHHhhcccc---
Confidence 457888877642 1 2234688999999876 320 3577999999999999999999863310
Q ss_pred ccCCCCCCCcccccCCCcchHHHHHHHhcc-ceecceeeEEE-eCCcc--cCccEEEEEeeeCCeeEe
Q 005717 94 KSNTSKSRVDIAALGTFEMGAKLLDTLINT-TFEGLSGNFHL-VNGQL--EPSAFEIFNVIGTSERVI 157 (681)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~G~~l~~~l~~~-~f~GltG~i~F-~~G~~--~~~~~~I~n~~~~~~~~v 157 (681)
.+.+.++..|.++|.++ +|+|++|++.| .+++. .+..+.|+++++++++.|
T Consensus 307 -------------~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~~~v 361 (362)
T 3snr_A 307 -------------PGTQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDRSRILLTVKNGKYVIV 361 (362)
T ss_dssp -------------TTSHHHHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGGGCEEEEEETTEEEEC
T ss_pred -------------CCCcchHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCCCeEEEEEECCEEEEc
Confidence 01234678999999999 89999999999 55333 235688999987666543
No 73
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=97.88 E-value=1.8e-05 Score=83.72 Aligned_cols=111 Identities=15% Similarity=0.202 Sum_probs=79.6
Q ss_pred cCccceEEEEEe------cC-CC---hhHHHHHHHHHhh-cCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcccCCccc
Q 005717 25 ESMQGVLGLRPY------IP-SS---KKLEHFKLRWIKS-ADKPDGSTGGSNLFGLWAYDTVWAIAMAVERAGIENSSFL 93 (681)
Q Consensus 25 ~~~~Gvlg~~~~------~~-~~---~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~aYDav~~lA~Al~~~~~~~~~~~ 93 (681)
...+|++....+ .+ .+ +..++|.++|+++ .. ..++.++..+|||+++++.|++++.....
T Consensus 260 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~------~~p~~~~~~~yda~~~~~~al~~a~~~~~--- 330 (386)
T 3sg0_A 260 KDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANGG------AAPTIFGVHLWDSMTLVENAIPAALKAAK--- 330 (386)
T ss_dssp GGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHTTT------CCCCHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred hhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHhCC------CCCChhHHHHHHHHHHHHHHHHHhhhccC---
Confidence 457888876642 12 22 3578999999876 22 03567999999999999999999853310
Q ss_pred ccCCCCCCCcccccCCCcchHHHHHHHhcc-ceecceeeEEE-eCCcc--cCccEEEEEeeeCCeeEe
Q 005717 94 KSNTSKSRVDIAALGTFEMGAKLLDTLINT-TFEGLSGNFHL-VNGQL--EPSAFEIFNVIGTSERVI 157 (681)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~G~~l~~~l~~~-~f~GltG~i~F-~~G~~--~~~~~~I~n~~~~~~~~v 157 (681)
.+.+.++..+.++|.++ +|+|++|++.| .+++. ....+.|++++++.++.+
T Consensus 331 -------------~g~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~~~~ 385 (386)
T 3sg0_A 331 -------------PGTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIRDGAFRLK 385 (386)
T ss_dssp -------------TTSHHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGGCEEEEEETTEEEEC
T ss_pred -------------CCCcchHHHHHHHHHhccCccccceeEEECCCcCCCCCCCceEEEEEECCEEEec
Confidence 01234578999999999 89999999999 54433 234688999987766544
No 74
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=97.83 E-value=0.00015 Score=74.34 Aligned_cols=120 Identities=17% Similarity=0.163 Sum_probs=74.4
Q ss_pred CCCCHHHHHhCCCeEEEecChhHHHHHh---hhcCCcccccc-ccCChhHHHHHHccCcceEEecchhhHHHHHhhcCCc
Q 005717 411 SFTDVKDIQKNGYFVGYQTNSFVKDLLT---KKLNFNETRLK-NYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSR 486 (681)
Q Consensus 411 ~i~s~~dL~~~~~~vg~~~~s~~~~~l~---~~~~~~~~~~~-~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~ 486 (681)
+|++++||. |++|++..|+.....+. +..+.....+. .+.+..+...++.+|++|+++...++..+...+. .
T Consensus 96 ~i~s~~dL~--Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~G~vDa~~~~~~~~~~~~~~~--~ 171 (308)
T 2x26_A 96 PIKTVADLK--GHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQGNVDAWAIWDPYYSAALLQG--G 171 (308)
T ss_dssp SCCSGGGGT--TSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTSSSEEEEETTHHHHHHHHS--S
T ss_pred CCCCHHHcC--CCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHcCCCCEEEecchhHHHHHhcC--C
Confidence 588999998 88999988876554331 33455433332 3456788899999999999988877777665543 3
Q ss_pred eEEECc--ccccCCcEEEec----CCCC-ChHHHHHHHHh----hccCcc-HHHHHHHHHc
Q 005717 487 YMMVGP--TYRTDGFGFAFP----LGSP-LVPYISRAILK----VTEDKE-KMENIEKALG 535 (681)
Q Consensus 487 l~~v~~--~~~~~~~~~~~~----k~sp-l~~~in~~Il~----l~e~~G-~l~~i~~kw~ 535 (681)
+.++.. .+......+++. +..| +...|.+++.+ +.++ + ...++..+|+
T Consensus 172 ~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~al~~a~~~~~~~-~~~~~~~~~~~~ 231 (308)
T 2x26_A 172 VRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALTRSQ-REQSIALLAKTM 231 (308)
T ss_dssp EEEEEESTTSCCCCEEEEEEHHHHHHTHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred cEEEecCCCcCCcceEEEEcHHHHHHCHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHh
Confidence 444422 221222223332 3344 77778877776 4444 3 4555666665
No 75
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=97.83 E-value=6.3e-05 Score=79.07 Aligned_cols=104 Identities=10% Similarity=0.006 Sum_probs=78.2
Q ss_pred cCccceEEEEEe----cCCChhHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcccCCcccccCCCCC
Q 005717 25 ESMQGVLGLRPY----IPSSKKLEHFKLRWIKSADKPDGSTGGSNLFGLWAYDTVWAIAMAVERAGIENSSFLKSNTSKS 100 (681)
Q Consensus 25 ~~~~Gvlg~~~~----~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~aYDav~~lA~Al~~~~~~~~~~~~~~~~~~ 100 (681)
...+|++....+ .+..+..++|.++|+++ ++. ...++.++..+|||+++++.|+++++.
T Consensus 243 ~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~--~~~--~~~p~~~a~~~yda~~~~~~al~~ag~------------- 305 (364)
T 3lop_A 243 DAVRGYSLALVMPNPGKSVNPVIREFNRARAAV--GAK--DVDLSFRAVEGFVAAKVLAEAIRRAGP------------- 305 (364)
T ss_dssp HHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHH--TCT--TCCCCHHHHHHHHHHHHHHHHHHHHCS-------------
T ss_pred hhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHh--cCC--CCCCChHHHHHHHHHHHHHHHHHHhCC-------------
Confidence 457888876632 24567889999999876 111 013577999999999999999999741
Q ss_pred CCcccccCCCcchHHHHHHHhcc-ceec-ceeeEEE-eCCcccCccEEEEEeeeCCe
Q 005717 101 RVDIAALGTFEMGAKLLDTLINT-TFEG-LSGNFHL-VNGQLEPSAFEIFNVIGTSE 154 (681)
Q Consensus 101 ~~~~~~~~~~~~G~~l~~~l~~~-~f~G-ltG~i~F-~~G~~~~~~~~I~n~~~~~~ 154 (681)
+.++..+.++|.++ +|+| ++|.+.| .+++.......|..++++++
T Consensus 306 ---------~~~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~~~~~~ 353 (364)
T 3lop_A 306 ---------KPTREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNGL 353 (364)
T ss_dssp ---------SCCHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTSC
T ss_pred ---------CCCHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEEcCCCc
Confidence 23568999999999 7999 9999999 56655555677777776543
No 76
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=97.74 E-value=0.00012 Score=76.62 Aligned_cols=108 Identities=14% Similarity=0.043 Sum_probs=62.7
Q ss_pred CCCCHHHHHhCCCeEEEecChhHHHHHh---hhcCCccccccccC-ChhHHHHHHccCcceEEecchhhHHHHHhhcCCc
Q 005717 411 SFTDVKDIQKNGYFVGYQTNSFVKDLLT---KKLNFNETRLKNYT-TSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSR 486 (681)
Q Consensus 411 ~i~s~~dL~~~~~~vg~~~~s~~~~~l~---~~~~~~~~~~~~~~-~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~ 486 (681)
+|++++||. |++||+..|+.....+. +..+.+...+.... +..+...+|.+|++|+++...+............
T Consensus 110 ~i~s~~DLk--Gk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~G~vDa~~~~~~~~~~~~~g~~~~ 187 (348)
T 3uif_A 110 TAKSIKDLK--GKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNVNPQVGAAALASGTVDGFFSLFDSYILEDRGVGKI 187 (348)
T ss_dssp CCCSGGGGT--TSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECCCHHHHHHHHHHTSSSEEEESTTHHHHHHTTSEEE
T ss_pred CCCCHHHcC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEECCHHHHHHHHHcCCCCEEEechHHHHHHhcCCcEE
Confidence 599999998 89999987776543331 44455443333332 5678889999999999988776654322211211
Q ss_pred eEEECccc--ccCCcEEEecCC----CC-ChHHHHHHHHhh
Q 005717 487 YMMVGPTY--RTDGFGFAFPLG----SP-LVPYISRAILKV 520 (681)
Q Consensus 487 l~~v~~~~--~~~~~~~~~~k~----sp-l~~~in~~Il~l 520 (681)
+....... .....+++++++ .| ....|.+++.+-
T Consensus 188 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~a 228 (348)
T 3uif_A 188 IWSTKTAPVDWKLMGGVWARNDFVKQNPEITQAIVTAYLKS 228 (348)
T ss_dssp EEEGGGSCGGGSCCEEEEEEHHHHHHCHHHHHHHHHHHHHH
T ss_pred EEeccccCCCCcceeEEEECHHHHHHCHHHHHHHHHHHHHH
Confidence 11111111 123346777765 44 555555554443
No 77
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=97.72 E-value=7.2e-05 Score=78.07 Aligned_cols=121 Identities=11% Similarity=0.080 Sum_probs=75.8
Q ss_pred CCCCHHHH-HhCCCeEEEecChhHHH-----HHhhhcCCccc--cccccCChhHHHHHHccCcceEEecchhhHHHHHhh
Q 005717 411 SFTDVKDI-QKNGYFVGYQTNSFVKD-----LLTKKLNFNET--RLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLAS 482 (681)
Q Consensus 411 ~i~s~~dL-~~~~~~vg~~~~s~~~~-----~l~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~ 482 (681)
+|++++|| . |++||+..++.... ++ +..+.... +++.+ +..+...++.+|++|+++...++......+
T Consensus 144 ~I~s~~DL~k--Gk~i~v~~~~s~~~~~~~~~l-~~~Gl~~~dv~~~~~-~~~~~~~al~~G~vDa~~~~~p~~~~~~~~ 219 (341)
T 3un6_A 144 HLNEFNNNGD--DYHFGIPHRYSTHYLLLEELR-KQLKIKPGHFSYHEM-SPAEMPAALSEHRITGYSVAEPFGALGEKL 219 (341)
T ss_dssp CGGGCCSSSS--CEEEEESCSSSHHHHHHHHHH-HHTTCCTTSEEEEEC-CGGGHHHHHHTTSCSEEEEETTHHHHHHHS
T ss_pred CCCCHHHhCC--CCEEEECCCCCHHHHHHHHHH-HHcCCCHHHeEEEEc-ChHHHHHHHHcCCCCEEEecCCHHHHHHhc
Confidence 58889998 6 88999987543332 33 44455432 33334 467888999999999999888887766655
Q ss_pred cCCceEEECccc-ccC-CcEEEecCC----CC-----ChHHHHHHHHhhccCccHHHHHHHHHcC
Q 005717 483 YCSRYMMVGPTY-RTD-GFGFAFPLG----SP-----LVPYISRAILKVTEDKEKMENIEKALGN 536 (681)
Q Consensus 483 ~c~~l~~v~~~~-~~~-~~~~~~~k~----sp-----l~~~in~~Il~l~e~~G~l~~i~~kw~~ 536 (681)
...........+ ... ..+++++++ .| +...+++++..+.++ +.-.++..+|+.
T Consensus 220 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~-~~~~~~~~~~~~ 283 (341)
T 3un6_A 220 GKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDR-KQSVDIMTHHFK 283 (341)
T ss_dssp SCCEEEEEGGGTSTTCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTTSH-HHHHHHHHHHSS
T ss_pred CCeEEEEeccccCCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHhC
Confidence 432222222222 222 245666654 44 566677777777777 544467777764
No 78
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=97.57 E-value=0.00046 Score=71.23 Aligned_cols=94 Identities=18% Similarity=0.197 Sum_probs=58.6
Q ss_pred CCCCHHHHHhCCCeEEEecChhHHHHHh---hhcCCccccccccC-ChhHHHHHHccCcceEEecchhhHHHHHhhcCCc
Q 005717 411 SFTDVKDIQKNGYFVGYQTNSFVKDLLT---KKLNFNETRLKNYT-TSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSR 486 (681)
Q Consensus 411 ~i~s~~dL~~~~~~vg~~~~s~~~~~l~---~~~~~~~~~~~~~~-~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~ 486 (681)
+|++++||. |++|++..|+.....+. +..+.+...+.... +..+...+|.+|++|+++...++......+.-.+
T Consensus 122 ~I~s~~DLk--Gk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~~~~~~~~al~~G~vDa~~~~~p~~~~~~~~~~~~ 199 (324)
T 3ksx_A 122 ALRTVADLK--GKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYLSPANARAAFAAGQVDAWAIWDPWYSALTLDGSAR 199 (324)
T ss_dssp SCCSGGGGT--TCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHTTCCSEEEEETTHHHHHHHTTSEE
T ss_pred CCCCHHHhC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHcCCCCEEEEccHHHHHHHhcCCcE
Confidence 699999998 99999988775443331 34455443333222 6788899999999999988877777665543212
Q ss_pred eEEECcccccCCcEEEecCC
Q 005717 487 YMMVGPTYRTDGFGFAFPLG 506 (681)
Q Consensus 487 l~~v~~~~~~~~~~~~~~k~ 506 (681)
+......+......+++++.
T Consensus 200 ~l~~~~~~~~~~~~~~~~~~ 219 (324)
T 3ksx_A 200 LLANGEGLGLTGGFFLSSRR 219 (324)
T ss_dssp EEEESTTSCCCCEEEEEEHH
T ss_pred EEecccccCCCccEEEECHH
Confidence 22223333333344555443
No 79
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=97.53 E-value=0.0004 Score=72.07 Aligned_cols=136 Identities=18% Similarity=0.204 Sum_probs=94.5
Q ss_pred HHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEEEe----eccccccccccceeecceEEEEEeccCCCcCcee
Q 005717 235 LQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTTIV----ANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWI 310 (681)
Q Consensus 235 ~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~it----~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~ 310 (681)
.++.| +++++++. +++..++..|.+|++|+++++.... .++.....+..++...+..+++++...
T Consensus 59 ~~~~g--~~v~~~~~--~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------- 127 (346)
T 3qsl_A 59 FKDEG--LDVSIADF--AGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKNL------- 127 (346)
T ss_dssp HHHTT--CEEEEEEC--SSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTTC-------
T ss_pred hHhhC--CeEEEEec--CChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCcc-------
Confidence 46678 45777766 6899999999999999988764433 344455556655555566666664421
Q ss_pred eeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCchhhHHHHHHHHHhccCcccccccchhHHHHHHHHHHHH
Q 005717 311 FLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQIGTIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLI 390 (681)
Q Consensus 311 fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~li 390 (681)
T Consensus 128 -------------------------------------------------------------------------------- 127 (346)
T 3qsl_A 128 -------------------------------------------------------------------------------- 127 (346)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEe-cChhHHH----HHhhhcCCcc--ccccccCChhHHHHHHcc
Q 005717 391 LTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQ-TNSFVKD----LLTKKLNFNE--TRLKNYTTSEDYHDALSN 463 (681)
Q Consensus 391 l~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~-~~s~~~~----~l~~~~~~~~--~~~~~~~~~~~~~~~l~~ 463 (681)
++|++++||. |++|++. .|+.... ++ +..+... .+++.+....+...+|.+
T Consensus 128 -------------------~~i~s~~DL~--Gk~i~~~~~gs~~~~~~~~~l-~~~G~~~~~v~~~~~~~~~~~~~al~~ 185 (346)
T 3qsl_A 128 -------------------PGYKGPADLK--GRKIGVTAPGSSTNMVVNFFL-AKHGLKASDVSFIGVGAGAGAVTALRS 185 (346)
T ss_dssp -------------------TTCCSGGGGT--TCEEEESSTTSHHHHHHHHHH-HHTTCCGGGSEEEECCSSHHHHHHHHH
T ss_pred -------------------cCCCChHHcC--CCEEEECCCCcHHHHHHHHHH-HHcCCCHHHeEEEecCCcHHHHHHHHc
Confidence 1589999998 8899998 5765433 33 4445543 334566667789999999
Q ss_pred CcceEEecchhhHHHHHhhc
Q 005717 464 GEVAAIFDEIPYIKIFLASY 483 (681)
Q Consensus 464 g~~~a~i~e~~~~~~~~~~~ 483 (681)
|++|+++...++......+.
T Consensus 186 G~vDa~~~~~p~~~~~~~~g 205 (346)
T 3qsl_A 186 GQIDAISNTDPVVSMLETSG 205 (346)
T ss_dssp TSCSEEEEETTHHHHHHHTT
T ss_pred CCccEEEecchhHHHHHhCC
Confidence 99999998877776555443
No 80
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=97.44 E-value=0.0003 Score=71.81 Aligned_cols=76 Identities=9% Similarity=0.014 Sum_probs=51.9
Q ss_pred eEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEe-EEEeecccc---ccccccceeecceEEE
Q 005717 222 QVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGD-TTIVANRST---FVDFTLPYSESGVSML 297 (681)
Q Consensus 222 ~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~-~~it~~R~~---~vdFT~P~~~~~~~~v 297 (681)
.+.|+.+.+-+-+.++.| +++++++. +....++..|.+|++|+++++ ......|.+ .+.+..++...+..++
T Consensus 16 ~~~~~~va~~~g~~~~~G--l~v~~~~~--~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 91 (302)
T 3ix1_A 16 VHTFLYVAIENGYFAEEG--LDVDIVFP--TNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRSPLNHVM 91 (302)
T ss_dssp GGHHHHHHHHTTHHHHTT--EEEEEECC--SSTTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECSCCEEEE
T ss_pred ccHHHHHHHHcChHHHcC--CcEEEecC--CCCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEeccCCEEEE
Confidence 346888888888889999 45777766 345689999999999999876 222233333 4445555555566677
Q ss_pred EEec
Q 005717 298 VLVK 301 (681)
Q Consensus 298 v~~~ 301 (681)
+++.
T Consensus 92 ~~~~ 95 (302)
T 3ix1_A 92 FLAE 95 (302)
T ss_dssp EEGG
T ss_pred EECC
Confidence 7654
No 81
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=97.37 E-value=0.0032 Score=64.23 Aligned_cols=121 Identities=12% Similarity=0.115 Sum_probs=82.5
Q ss_pred CCCCHHHHHhC------CCeEEEec-ChhHHH---HHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHH
Q 005717 411 SFTDVKDIQKN------GYFVGYQT-NSFVKD---LLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFL 480 (681)
Q Consensus 411 ~i~s~~dL~~~------~~~vg~~~-~s~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~ 480 (681)
+++|++||+.. ...+|... |+..+- .+.+..+.+- ..++|....+...+|..|++|+.+........++
T Consensus 113 ~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~G~~~-~~Vpy~g~~~a~~al~~G~vD~~~~~~~~~~~~i 191 (301)
T 2qpq_A 113 KYKTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKTHM-VHVPYKGCGPALNDVLGSQIGLAVVTASSAIPFI 191 (301)
T ss_dssp SCCSHHHHHHHTCSSSCCCEEEESSTTSHHHHHHHHHHHHHTCCC-EEEECSSHHHHHHHHHTTSSSCEEEEHHHHHHHH
T ss_pred CCCCHHHHHHHHHhCCCceEEecCCCCcHHHHHHHHHHHHhCCCe-EEeccCChHHHHHHHHCCCccEEEEcHHHHHHHH
Confidence 68999999852 23677753 544332 2223344432 3458899999999999999999998876665544
Q ss_pred hhcCCceEEE---Cc----------cc---------ccCCcEEEecCCCC--ChHHHHHHHHhhccCccHHHHHHHHHc
Q 005717 481 ASYCSRYMMV---GP----------TY---------RTDGFGFAFPLGSP--LVPYISRAILKVTEDKEKMENIEKALG 535 (681)
Q Consensus 481 ~~~c~~l~~v---~~----------~~---------~~~~~~~~~~k~sp--l~~~in~~Il~l~e~~G~l~~i~~kw~ 535 (681)
+. . +++.+ ++ .+ ....++++.|+|-| ++..+++++.++.++ +.+++..+++-
T Consensus 192 ~~-g-~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~-~~~~~~~~~~g 267 (301)
T 2qpq_A 192 KA-G-KLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAKVMQR-DDVQKKLADLG 267 (301)
T ss_dssp HT-T-SEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTC-HHHHHHHHHHT
T ss_pred hc-C-CeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCCHHHHHHHHHHHHHHHcC-HHHHHHHHHCC
Confidence 43 2 33332 11 01 12246899999976 999999999999999 88888777664
No 82
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=97.34 E-value=0.0041 Score=63.76 Aligned_cols=123 Identities=19% Similarity=0.237 Sum_probs=82.2
Q ss_pred CCCCHHHHHhC------CCeEEEe-cChhHH---HHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHH
Q 005717 411 SFTDVKDIQKN------GYFVGYQ-TNSFVK---DLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFL 480 (681)
Q Consensus 411 ~i~s~~dL~~~------~~~vg~~-~~s~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~ 480 (681)
+++|++||+.. ...+|.. .|+..+ ..+.+..+.+- ..++|....+...+|..|++|+++........++
T Consensus 126 ~~~tl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~~-~~Vpy~G~~~a~~al~~G~vD~~~~~~~~~~~~i 204 (314)
T 2dvz_A 126 PAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTDI-VHVPYKGSGPAVADAVGGQIELIFDNLPSSMPQI 204 (314)
T ss_dssp SCSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHTCCC-EEEECSSHHHHHHHHHHTSSSEEEEEHHHHHHHH
T ss_pred CCCCHHHHHHHHHhCCCcEEEeCCCCCcHHHHHHHHHHHHhCCCe-EEcccCCHHHHHHHHHcCCceEEEEcHHHHHHHH
Confidence 68999999852 2467776 354433 22223344432 3467888899999999999999998876665544
Q ss_pred hhc-CCceEEECc----------ccc---------cCCcEEEecCCCC--ChHHHHHHHHhhccCccHHHHHHHHHc
Q 005717 481 ASY-CSRYMMVGP----------TYR---------TDGFGFAFPLGSP--LVPYISRAILKVTEDKEKMENIEKALG 535 (681)
Q Consensus 481 ~~~-c~~l~~v~~----------~~~---------~~~~~~~~~k~sp--l~~~in~~Il~l~e~~G~l~~i~~kw~ 535 (681)
+.. .+-|.+.++ .+. ...++++.|+|-| .+..+++++.++.++ +.+.+..+++-
T Consensus 205 ~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~-p~~~~~~~~~g 280 (314)
T 2dvz_A 205 QAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKD-PKVIKALDDQG 280 (314)
T ss_dssp HTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTCCHHHHHHHHHHHHHHHTC-HHHHHHHHHHT
T ss_pred HcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCCCCHHHHHHHHHHHHHHHcC-HHHHHHHHHCC
Confidence 432 211222211 011 1236899999976 999999999999999 88887776653
No 83
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=97.22 E-value=0.0076 Score=61.66 Aligned_cols=121 Identities=17% Similarity=0.175 Sum_probs=82.4
Q ss_pred CCCCHHHHHh------CCCeEEEe-cChhHHH---HHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHH
Q 005717 411 SFTDVKDIQK------NGYFVGYQ-TNSFVKD---LLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFL 480 (681)
Q Consensus 411 ~i~s~~dL~~------~~~~vg~~-~~s~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~ 480 (681)
+++|++||+. ....+|.. .|+..+- .+.+..+.+- ..++|....+...+|..|++|+++........++
T Consensus 122 ~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~~-~~Vpy~G~~~a~~aL~~G~VD~~~~~~~~~~~~i 200 (312)
T 2f5x_A 122 PPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVNL-LTIPYKGTAPAMNDLLGKQVDLMCDQTTNTTQQI 200 (312)
T ss_dssp SCCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTCCC-EEEECSSHHHHHHHHHTTSSCEEEEEHHHHHHHH
T ss_pred CCCCHHHHHHHHHhCCCceEEeCCCCCcHHHHHHHHHHHHHCCCe-EEeccCChHHHHHHHHcCCccEEEechHHHHHHH
Confidence 6999999985 23477776 3554332 2223344432 3468888899999999999999998876665555
Q ss_pred hhcCCceEEE---Cc----------ccc---------cCCcEEEecCCCC--ChHHHHHHHHhhccCccHHHHHHHHHc
Q 005717 481 ASYCSRYMMV---GP----------TYR---------TDGFGFAFPLGSP--LVPYISRAILKVTEDKEKMENIEKALG 535 (681)
Q Consensus 481 ~~~c~~l~~v---~~----------~~~---------~~~~~~~~~k~sp--l~~~in~~Il~l~e~~G~l~~i~~kw~ 535 (681)
+.. +++.+ ++ .+. ...++++.|+|-| +++.+++++.++.++ +.+.+..+++-
T Consensus 201 ~~g--~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~-p~~~~~~~~~g 276 (312)
T 2f5x_A 201 TSG--KVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLAD-PKFQERMKQLG 276 (312)
T ss_dssp HTT--SSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTC-HHHHHHHHHTT
T ss_pred HcC--CeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCCHHHHHHHHHHHHHHHcC-HHHHHHHHHCC
Confidence 432 23322 11 111 1236889999976 999999999999999 88887766653
No 84
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=96.85 E-value=0.0011 Score=55.84 Aligned_cols=76 Identities=14% Similarity=0.033 Sum_probs=61.5
Q ss_pred HHHHHHHhhhhhcccCCCCCCCCCCchhhHHHHHHHHHhccC-cc-cccccchhHHHHHHHHHHHHHHhHhhhhhhheee
Q 005717 327 FIFTGLVVWVLEHRINTEFRGPPQHQIGTIFWFSFSTLVFAH-RE-RVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLT 404 (681)
Q Consensus 327 ~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT 404 (681)
+++.+.+++.+|+..+ +....++.+++|+++.++..-| ++ .|.+..+|++.++|+++++.+.+...+.+++.++
T Consensus 19 ~~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~ 94 (103)
T 2k1e_A 19 LEEASKKAVEAERGAP----GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFV 94 (103)
T ss_dssp HHHHHHHHHHHHTTST----TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGG
T ss_pred HHHHHHhhhhhccCCC----CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777887643 2334578999999999998776 54 4889999999999999999999999999999887
Q ss_pred ec
Q 005717 405 VQ 406 (681)
Q Consensus 405 ~~ 406 (681)
..
T Consensus 95 ~~ 96 (103)
T 2k1e_A 95 RR 96 (103)
T ss_dssp GH
T ss_pred HH
Confidence 54
No 85
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=96.83 E-value=0.0033 Score=54.69 Aligned_cols=74 Identities=14% Similarity=0.149 Sum_probs=60.0
Q ss_pred HHHHHHhhhhhcccCCCCCCCCCCchhhHHHHHHHHHhccC-cc-cccccchhHHHHHHHHHHHHHHhHhhhhhhheeee
Q 005717 328 IFTGLVVWVLEHRINTEFRGPPQHQIGTIFWFSFSTLVFAH-RE-RVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTV 405 (681)
Q Consensus 328 ~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~ 405 (681)
++.+.+++.+|+..+ ++...++.+++|+++.++..-| ++ .|.+..+|++.++|+++++.+.+..++.+++.++.
T Consensus 41 ~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~ 116 (122)
T 2ih3_C 41 LAGSYLAVLAERGAP----GAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 116 (122)
T ss_dssp HHHHHHHHHHHTTST----TCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhheeeecCC----CCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666777777542 2334679999999999998766 54 48999999999999999999999999999998864
No 86
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=96.83 E-value=0.0029 Score=65.46 Aligned_cols=59 Identities=19% Similarity=0.290 Sum_probs=42.7
Q ss_pred CCCCHHHHHhCCCeEEEe-cChhHH----HHHhhhcCCccccc--cccCChhHHHHHHccCcceEEecc
Q 005717 411 SFTDVKDIQKNGYFVGYQ-TNSFVK----DLLTKKLNFNETRL--KNYTTSEDYHDALSNGEVAAIFDE 472 (681)
Q Consensus 411 ~i~s~~dL~~~~~~vg~~-~~s~~~----~~l~~~~~~~~~~~--~~~~~~~~~~~~l~~g~~~a~i~e 472 (681)
+|++++||. ++++++. .|+..+ .++ +..+.+...+ +.|.+..+...++.+|++|+++..
T Consensus 137 ~i~sl~DL~--gk~v~~~~~Gs~~~~~~~~~l-~~~Gi~~~~v~~v~~~g~~~a~~aL~~G~vDa~~~~ 202 (327)
T 4ddd_A 137 NISVIDDIK--GKRVNIGSPGTGVRVAMLKLL-GEKGWTKKDFSVMAELKSSEQAQALCDNKIDVMVDV 202 (327)
T ss_dssp SCCSGGGGT--TSEEECCSTTSHHHHHHHHHH-HHHTCCGGGCSEEECCCHHHHHHHHHTTSCSBEEEE
T ss_pred CCCCHHHhC--CCEEecCCCCccHHHHHHHHH-HHcCCChHhcchhhcCCHHHHHHHHHcCCCCEEEEc
Confidence 589999998 7788884 565433 233 4445544333 578889999999999999998864
No 87
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=96.46 E-value=0.0085 Score=54.38 Aligned_cols=77 Identities=12% Similarity=0.114 Sum_probs=61.2
Q ss_pred HHHHHHhhhhhcccCCCCCCCCCCchhhHHHHHHHHHhccC-cc-cccccchhHHHHHHHHHHHHHHhHhhhhhhheeee
Q 005717 328 IFTGLVVWVLEHRINTEFRGPPQHQIGTIFWFSFSTLVFAH-RE-RVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTV 405 (681)
Q Consensus 328 ~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~ 405 (681)
++.+++++.+|+..+ ++...++.+++|+++.++..-| ++ .|.+..+|++.++|.++++.+.+..++.+++.++.
T Consensus 64 ~~~a~~~~~~E~~~~----~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~ 139 (155)
T 2a9h_A 64 LAGSYLAVLAERGAP----GAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVG 139 (155)
T ss_dssp HHHHHHHHHHHTTSS----CSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCC----CCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777776542 2334579999999999998766 44 48899999999999999999999999999999876
Q ss_pred ccc
Q 005717 406 QRL 408 (681)
Q Consensus 406 ~~~ 408 (681)
...
T Consensus 140 ~~~ 142 (155)
T 2a9h_A 140 REQ 142 (155)
T ss_dssp CCC
T ss_pred HHH
Confidence 543
No 88
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=96.42 E-value=0.01 Score=52.91 Aligned_cols=73 Identities=15% Similarity=0.145 Sum_probs=57.9
Q ss_pred HHHHHhhhhhcccCCCCCCCCCCchhhHHHHHHHHHhccC-cc-cccccchhHHHHHHHHHHHHHHhHhhhhhhheeee
Q 005717 329 FTGLVVWVLEHRINTEFRGPPQHQIGTIFWFSFSTLVFAH-RE-RVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTV 405 (681)
Q Consensus 329 ~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~ 405 (681)
+.+.+++.+++.. .++...++.+++||++.++..-| ++ .|.+..+|++.++|.++++.+.+...+.+++.+..
T Consensus 21 ~~a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~ 95 (139)
T 3eff_K 21 AGSYLAVLAERGA----PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 95 (139)
T ss_dssp HHHHHHHHTTSSC----TTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred HHHHHHHHHhcCC----CCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666643 22334678999999999998766 44 58899999999999999999999999999988743
No 89
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=96.12 E-value=0.039 Score=56.51 Aligned_cols=107 Identities=14% Similarity=0.134 Sum_probs=62.4
Q ss_pred CCCCHHHHHhCCCeEEEec-ChhHHH---HHhhhcCCcc-ccccccCChhHHHHHHccC----cceEEecchhhHHHHHh
Q 005717 411 SFTDVKDIQKNGYFVGYQT-NSFVKD---LLTKKLNFNE-TRLKNYTTSEDYHDALSNG----EVAAIFDEIPYIKIFLA 481 (681)
Q Consensus 411 ~i~s~~dL~~~~~~vg~~~-~s~~~~---~l~~~~~~~~-~~~~~~~~~~~~~~~l~~g----~~~a~i~e~~~~~~~~~ 481 (681)
+|++++|| ++||+.. |+.... .+.+..+.+. .+++.+.+..+...++.+| ++|+++.+.........
T Consensus 111 ~i~s~~DL----K~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~G~~~~~vDa~~~ep~~~~~~~~ 186 (321)
T 2x7q_A 111 DVTDAKQL----KRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNLKDGVEGSDAFMWEYFTSKKYYD 186 (321)
T ss_dssp TCSSGGGC----CEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTTCTTSCCCSEEEEEHHHHHHHHH
T ss_pred CCCChHHc----ceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHcCCCccceEEEEecCccchhhcc
Confidence 58999999 5799976 654432 2213334442 3555666788899999999 99998766433333222
Q ss_pred hcCCceEEECcccccC-CcEEEecCC----CC-----ChHHHHHHHHhhccC
Q 005717 482 SYCSRYMMVGPTYRTD-GFGFAFPLG----SP-----LVPYISRAILKVTED 523 (681)
Q Consensus 482 ~~c~~l~~v~~~~~~~-~~~~~~~k~----sp-----l~~~in~~Il~l~e~ 523 (681)
.- .+..+.+.+... ..++++++. .| +...+.+++..+.++
T Consensus 187 -~g-~~~~~~d~~~~~~~~~l~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~ 236 (321)
T 2x7q_A 187 -NH-EIKQIDQIYTPWSSWVVATSSDSLQAKSDVIKNFIDAVNQGIQYYNEH 236 (321)
T ss_dssp -TT-SEEEEEEEECSSCSEEEEEEHHHHHHSHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CC-ceEEccccCCCCceEEEEEcHHHHhhCHHHHHHHHHHHHHHHHHHHHC
Confidence 22 355544433222 246777654 34 444455555555554
No 90
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=95.97 E-value=0.024 Score=50.33 Aligned_cols=56 Identities=13% Similarity=0.275 Sum_probs=49.7
Q ss_pred CchhhHHHHHHHHHhccC-cc-cccccchhHHHHHHHHHHHHHHhHhhhhhhheeeec
Q 005717 351 HQIGTIFWFSFSTLVFAH-RE-RVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQ 406 (681)
Q Consensus 351 ~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~ 406 (681)
.++.+++|+++.++..-| ++ .|.+..+|++.++|+++++.+.+..++.+++.+...
T Consensus 42 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 99 (137)
T 4h33_A 42 NNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCK 99 (137)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred CCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999998766 54 589999999999999999999999999999988653
No 91
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=95.80 E-value=0.1 Score=54.48 Aligned_cols=59 Identities=12% Similarity=0.125 Sum_probs=44.7
Q ss_pred CCCCCHHHHHhCCCeEEEecChhHHHHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhH
Q 005717 410 PSFTDVKDIQKNGYFVGYQTNSFVKDLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYI 476 (681)
Q Consensus 410 ~~i~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~ 476 (681)
.+|++++||. |++|.+. +......+ +..+... +.. ...|...+|.+|.+|+.....+..
T Consensus 164 ~pI~s~~DLk--G~kirv~-~~~~~~~~-~~lGa~p---v~~-~~~e~~~ALq~G~VDg~~~~~~~~ 222 (361)
T 2zzv_A 164 KPIRRFEDFK--GVKLRVP-GGMIAEVF-AAAGAST---VLL-PGGEVYPALERGVIDAADFVGPAV 222 (361)
T ss_dssp SCCCSGGGGT--TCEEECC-SHHHHHHH-HHTTCEE---ECC-CGGGHHHHHHTTSCSEEECSCHHH
T ss_pred CCcCChHHhC--CCEEeec-CHHHHHHH-HHcCCee---eec-ChHHHHHHHHcCCcceeecCCcch
Confidence 5899999999 9999988 55555666 6566532 222 567889999999999998766665
No 92
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=95.74 E-value=0.0077 Score=62.03 Aligned_cols=94 Identities=13% Similarity=-0.021 Sum_probs=61.6
Q ss_pred CccceEEEEEe---cCCChhHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcccCCcccccCCCCCCC
Q 005717 26 SMQGVLGLRPY---IPSSKKLEHFKLRWIKSADKPDGSTGGSNLFGLWAYDTVWAIAMAVERAGIENSSFLKSNTSKSRV 102 (681)
Q Consensus 26 ~~~Gvlg~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~aYDav~~lA~Al~~~~~~~~~~~~~~~~~~~~ 102 (681)
.++|++..... .+..+..+.|.++|+... ....+.+++|||+.+++.+.+.
T Consensus 226 ~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~--------~~~~~~AlgyDA~~l~~~l~~~------------------ 279 (327)
T 3ckm_A 226 QMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY--------QLMRLYAMGADAWLLINQFNEL------------------ 279 (327)
T ss_dssp HTTTCEEEECGGGGCCCSHHHHHHHHHTTTCH--------HHHHHHHHHHHHHHHHHTHHHH------------------
T ss_pred hcCCeEEEcccccCCCCCHHHHHHHHHHHhhc--------CCCchHHHHHHHHHHHHHHHHh------------------
Confidence 46676655542 345567888888876530 1223677899998876654332
Q ss_pred cccccCCCcchHHHHHHHhccceecceeeEEE-eCCcccCccEEEEEeeeCCeeEeeeee
Q 005717 103 DIAALGTFEMGAKLLDTLINTTFEGLSGNFHL-VNGQLEPSAFEIFNVIGTSERVIGYWT 161 (681)
Q Consensus 103 ~~~~~~~~~~G~~l~~~l~~~~f~GltG~i~F-~~G~~~~~~~~I~n~~~~~~~~vG~W~ 161 (681)
..+....|+|+||.|+| ++|+.. ..+.+.+++++.++.|..-+
T Consensus 280 ---------------~~~~~~~f~G~tG~i~fd~~G~~~-r~l~~~~~~~G~~vpv~d~~ 323 (327)
T 3ckm_A 280 ---------------RQVPGYRLSGLTGILSADTNCNVE-RDMTWYQYQDGAIVPVVDHH 323 (327)
T ss_dssp ---------------HHSTTCCEEETTEEEEECTTCBEE-EECEEEEEETTEEEECC---
T ss_pred ---------------cCCCCCCceeceEEEEECCCCCCc-cccEEEEEECCEEEEccccc
Confidence 12234579999999999 888754 56778888888788776543
No 93
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=95.33 E-value=0.13 Score=48.48 Aligned_cols=196 Identities=9% Similarity=0.029 Sum_probs=116.2
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++||||+..... ..+..+++..+.+..+ .+++++... +...++.+|.+|++|+++....
T Consensus 8 g~l~Ig~~~~~~-----------------~~~l~~~l~~f~~~~P-~i~i~i~~~---~~~~~~~~l~~g~~Di~i~~~~ 66 (222)
T 4ab5_A 8 GELRIAVECHTC-----------------FDWLMPAMGEFRPMWP-QVELDIVSG---FQADPVGLLLQHRADLAIVSEA 66 (222)
T ss_dssp EEEEEECCCTTT-----------------HHHHHHHHHHHHHHST-TEEEEEECC---CCSCTHHHHHTTSCSEEEESCC
T ss_pred ceEEEEEehHHH-----------------HHHHHHHHHHHHHHCC-CcEEEEecC---CHHHHHHHHHcCCcCEEEecCC
Confidence 679999765211 1455678888888876 356666654 6678999999999999987422
Q ss_pred EeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCchh
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQIG 354 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~ 354 (681)
.....+. ..++....+++++++.....
T Consensus 67 ---~~~~~~~-~~~l~~~~~~~v~~~~~pl~------------------------------------------------- 93 (222)
T 4ab5_A 67 ---EKQNGIS-FQPLFAYEMVGICAPDHPLA------------------------------------------------- 93 (222)
T ss_dssp ---CCCTTEE-EEEEEEEEEEEEECTTSGGG-------------------------------------------------
T ss_pred ---CCcCCeE-EEEeecCcEEEEecCCChhh-------------------------------------------------
Confidence 1222222 46777888888887654211
Q ss_pred hHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCe-EEEecChhH
Q 005717 355 TIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYF-VGYQTNSFV 433 (681)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~-vg~~~~s~~ 433 (681)
....-+++||. +.+ +....++..
T Consensus 94 ------------------------------------------------------~~~~i~~~dL~--~~~~i~~~~~~~~ 117 (222)
T 4ab5_A 94 ------------------------------------------------------AKNVWTAEDFI--GETLITYPVPDEM 117 (222)
T ss_dssp ------------------------------------------------------GCSEECGGGGS--SSCEEECSSCGGG
T ss_pred ------------------------------------------------------ccCCcCHHHHc--CCCEEecCCCcHH
Confidence 00122678887 443 333344333
Q ss_pred H----HHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcCCceEEECcccccCCcEEEecCCCCC
Q 005717 434 K----DLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSRYMMVGPTYRTDGFGFAFPLGSPL 509 (681)
Q Consensus 434 ~----~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~l~~v~~~~~~~~~~~~~~k~spl 509 (681)
. .++ +..++... ....++.+...+++..|...+++.+.....+...... ....+........++++.+++.+.
T Consensus 118 ~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~v~~g~gi~~~p~~~~~~~~~~~~l-~~~~~~~~~~~~~~~l~~~~~~~~ 194 (222)
T 4ab5_A 118 LDLPKKIL-IPKNINPP-RRHSELTIAIIQLVASRRGIAALPYWTVMPYLEKGYV-VHRQITADGLQSKLYAAIRTEDTD 194 (222)
T ss_dssp CHHHHHTT-GGGTCCCC-EEECSCHHHHHHHHHTTSCBEEEEHHHHHHHHHTTSC-EEEEESTTCCEEEEEEEEEGGGTT
T ss_pred HHHHHHHH-HHcCCCCC-eEecCCHHHHHHHHHcCCeEEEcchHHhHHHhhcCcE-EEEecCCCccceEEEEEEeCCccc
Confidence 3 333 33344444 5567788888899988866666655433333222222 122233333455678888888776
Q ss_pred hHHHHHHHHhhccC
Q 005717 510 VPYISRAILKVTED 523 (681)
Q Consensus 510 ~~~in~~Il~l~e~ 523 (681)
...+...+..+.+.
T Consensus 195 ~~~~~~f~~~l~~~ 208 (222)
T 4ab5_A 195 KSYLNNFCQIIRER 208 (222)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhh
Confidence 66666666555543
No 94
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=95.21 E-value=0.077 Score=56.60 Aligned_cols=104 Identities=7% Similarity=0.014 Sum_probs=61.7
Q ss_pred HHHHhCCCeEEEe-cChhHHHHHh---hhcCCcc---ccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcCCceE
Q 005717 416 KDIQKNGYFVGYQ-TNSFVKDLLT---KKLNFNE---TRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSRYM 488 (681)
Q Consensus 416 ~dL~~~~~~vg~~-~~s~~~~~l~---~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~l~ 488 (681)
+||. |++||+. .++....++. +..+... -+++.+ ...+...+|.+|++|+++...++......+.-....
T Consensus 151 ~dLk--Gk~iav~~~gs~~~~~l~~~L~~~Gl~~~~dv~~v~~-~~~~~~~aL~~G~vDa~~~~eP~~~~~~~~g~~~~~ 227 (417)
T 2g29_A 151 AKVT--DPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVV-PPAQMVANVKVNAMESFCVGEPWPLQTVNQGVGYQA 227 (417)
T ss_dssp HTSS--SCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEEEC-CGGGHHHHHHTTSCSEEEEETTHHHHHHHHTSCEEE
T ss_pred HhcC--CCEEEEeCCCCHHHHHHHHHHHHcCCCCCCceEEEEC-CHHHHHHHHHcCCCCEEEeCCCHHHHHHHcCCCEEE
Confidence 6676 8899997 4665433331 3345543 244455 457889999999999999877777665555421222
Q ss_pred EE-CcccccCC-cEEEecCC----CC-----ChHHHHHHHHhhcc
Q 005717 489 MV-GPTYRTDG-FGFAFPLG----SP-----LVPYISRAILKVTE 522 (681)
Q Consensus 489 ~v-~~~~~~~~-~~~~~~k~----sp-----l~~~in~~Il~l~e 522 (681)
.. ++.....+ .++++++. .| ++..+.++...+.+
T Consensus 228 ~~~~~~~~~~p~~~l~~~~~~~~~~p~~~~~~~~A~~~A~~~~~~ 272 (417)
T 2g29_A 228 LTTGQLWKDHPEKAFGMRADWVDQNPKAAKALLMAVMEAQQWCDQ 272 (417)
T ss_dssp EEGGGTBTTCBCEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred EechhhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 22 23222222 56777754 34 44456666666665
No 95
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=95.06 E-value=0.084 Score=42.07 Aligned_cols=52 Identities=10% Similarity=0.114 Sum_probs=46.2
Q ss_pred chhhHHHHHHHHHhccC-cc-cccccchhHHHHHHHHHHHHHHhHhhhhhhhee
Q 005717 352 QIGTIFWFSFSTLVFAH-RE-RVVNNLSRFVLIIWVFVVLILTQSYTASLTSML 403 (681)
Q Consensus 352 ~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~L 403 (681)
++.+++|+++.++..-+ ++ .|.+..+|++.+++.++++.+.+...+++++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999998766 44 488999999999999999999999999988764
No 96
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=94.90 E-value=0.046 Score=54.59 Aligned_cols=99 Identities=14% Similarity=-0.062 Sum_probs=56.3
Q ss_pred HHHHhCCCeEEEe-cChhHHHHHhhhcCCccccccccCChhHHHHHHccCcceEEec-chhhHHHHHhhcCCceEEECc-
Q 005717 416 KDIQKNGYFVGYQ-TNSFVKDLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFD-EIPYIKIFLASYCSRYMMVGP- 492 (681)
Q Consensus 416 ~dL~~~~~~vg~~-~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~-e~~~~~~~~~~~c~~l~~v~~- 492 (681)
+||. |++||+. .++....++ +.. ....++ .+.+..+...++.+|++||++. +.+... +.+. .+..+..
T Consensus 99 ~DLk--GK~Iav~~~~s~~~~ll-~~~-l~~~~~-~~~~~~~~~~al~~G~vDa~~~~~~~~~~-~~~~---g~~~~~~~ 169 (280)
T 1zbm_A 99 ISLD--GKRIAVPGRYTTANLLL-KLA-VEDFEP-VEMPFDRIIQAVLDEEVDAGLLIHEGQIT-YADY---GLKCVLDL 169 (280)
T ss_dssp CCCT--TCEEEESCTTSHHHHHH-HHH-CSSCEE-EECCGGGHHHHHHTTSSSEEEECSGGGGT-GGGG---TCEEEEEH
T ss_pred hhcC--CCEEEecCCCcHHHHHH-HHH-hccCce-EecCHHHHHHHHHcCCCCEEEEechHHhH-HHhc---CCeEeccH
Confidence 5676 8899996 455443334 321 122233 3446678899999999999874 334443 2222 2222211
Q ss_pred --cc-----ccCC-cEEEecCC-CC-ChHHHHHHHHhhccC
Q 005717 493 --TY-----RTDG-FGFAFPLG-SP-LVPYISRAILKVTED 523 (681)
Q Consensus 493 --~~-----~~~~-~~~~~~k~-sp-l~~~in~~Il~l~e~ 523 (681)
.. ...+ .+++++++ .| +...|.+++.+..+.
T Consensus 170 ~~~~~~~~g~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~ 210 (280)
T 1zbm_A 170 WDWWSEQVKLPLPLGLNAIRRDLSVEVQEEFLRAMRESIAF 210 (280)
T ss_dssp HHHHHTTCSSCEEEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCeeEEEEcccCCHHHHHHHHHHHHHHHHH
Confidence 10 0112 36788888 56 777777777776654
No 97
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=94.84 E-value=0.069 Score=44.11 Aligned_cols=58 Identities=14% Similarity=0.272 Sum_probs=50.2
Q ss_pred CchhhHHHHHHHHHhccC-cc-cccccchhHHHHHHHHHHHHHHhHhhhhhhheeeeccc
Q 005717 351 HQIGTIFWFSFSTLVFAH-RE-RVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRL 408 (681)
Q Consensus 351 ~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~ 408 (681)
.++.+++|+++.++..-| ++ .|.+..+|++.++|.++++.+.+...+.+++.++.+..
T Consensus 31 ~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~~ 90 (97)
T 3ouf_A 31 LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI 90 (97)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 468999999999998766 44 58899999999999999999999999999998875443
No 98
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=94.77 E-value=0.085 Score=45.02 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=48.0
Q ss_pred chhhHHHHHHHHHhccC-cc-cccccchhHHHHHHHHHHHHHHhHhhhhhhheeeec
Q 005717 352 QIGTIFWFSFSTLVFAH-RE-RVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQ 406 (681)
Q Consensus 352 ~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~ 406 (681)
++.+++|+++.++..-| ++ .|.+..+|++.++|.++++.+.+...+.+++.++..
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~ 105 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 105 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999998766 44 488999999999999999999999999999887543
No 99
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=94.67 E-value=0.12 Score=52.49 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=41.0
Q ss_pred CCCCHHHHHhCCCeEEE-ecChhHHH----HHhhhcCCccccc--cccCChhHHHHHHccCcceEEecc
Q 005717 411 SFTDVKDIQKNGYFVGY-QTNSFVKD----LLTKKLNFNETRL--KNYTTSEDYHDALSNGEVAAIFDE 472 (681)
Q Consensus 411 ~i~s~~dL~~~~~~vg~-~~~s~~~~----~l~~~~~~~~~~~--~~~~~~~~~~~~l~~g~~~a~i~e 472 (681)
++++++||. ++++++ ..|+..+. ++ +..+.....+ ..+.+..+...++.+|++|+.+..
T Consensus 122 ~i~sl~dL~--g~~i~~~~~gs~~~~~~~~~l-~~~G~~~~~v~~~~~~~~~~~~~al~~G~vda~~~~ 187 (314)
T 1us5_A 122 GIRTVADLK--GKRVVVGDVGSGTEQNARQIL-EAYGLTFDDLGQAIRVSASQGIQLMQDKRADALFYT 187 (314)
T ss_dssp SCSSGGGGT--TSEEECCCTTCHHHHHHHHHH-HHTTCCGGGSSEEECCCHHHHHHHHHTTSCSEEEEE
T ss_pred CCCcHHHhC--CCEeecCCCCchHHHHHHHHH-HHcCCCHHHcCceecCCHHHHHHHHHcCCccEEEEc
Confidence 578999998 678887 45665433 33 4445543333 356677888999999999998864
No 100
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=94.49 E-value=0.24 Score=51.67 Aligned_cols=45 Identities=0% Similarity=-0.129 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCCcCeEEEeCCC-CCHHHHHHHHHhCccceEEEeE
Q 005717 229 DMFHAVLQVLEFPLPYEFVPFHD-GSFDELLHKIEKQEFDTAVGDT 273 (681)
Q Consensus 229 dll~~l~~~l~f~~~~~~v~~~~-g~~~gli~~l~~g~~Dia~~~~ 273 (681)
.+.+.+.++.|-++++++.+.+. |+..++++.+..|.+|++....
T Consensus 53 ~fa~~v~e~s~G~v~i~~~~~g~Lg~~~~~~eav~~G~iD~~~~~~ 98 (365)
T 2hzl_A 53 VLSKMLSEATDGNFQIQVFSAGELVPGLQAADAVTEGTVECCHTVG 98 (365)
T ss_dssp HHHHHHHHHTTTSSEEEEECTTTSSCGGGHHHHHHTTSSSEEEECG
T ss_pred HHHHHHHHhcCCeEEEEEecCCcccCHHHHHHHHHcCccceeecch
Confidence 46677888888777788887655 7889999999999999987653
No 101
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=94.18 E-value=0.073 Score=54.72 Aligned_cols=91 Identities=13% Similarity=0.076 Sum_probs=62.0
Q ss_pred cCccceEEEE-Ee--cCCChhHHHHHHHHHhhcCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHcccCCcccccCCCCCC
Q 005717 25 ESMQGVLGLR-PY--IPSSKKLEHFKLRWIKSADKPDGSTGGSNLFGLWAYDTVWAIAMAVERAGIENSSFLKSNTSKSR 101 (681)
Q Consensus 25 ~~~~Gvlg~~-~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~aYDav~~lA~Al~~~~~~~~~~~~~~~~~~~ 101 (681)
..++|++-.. |+ .++.+..++|.++|+.. + .+..+.+++|||+.+++.+ .++
T Consensus 223 ~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~--~------~~~rl~AlgyDA~~l~~~l-~~l---------------- 277 (325)
T 2h4a_A 223 AQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGE--Y------QLMRLYAMGADAWLLINQF-NEL---------------- 277 (325)
T ss_dssp HHTTTCEEEECGGGSCCCSHHHHHHHHHTTTC--H------HHHHHHHHHHHHHHHHHTH-HHH----------------
T ss_pred hhcCCcEEEccccccCCCcHHHHHHHhccCCC--c------chHHHHHHHHHHHHHHHHH-HHH----------------
Confidence 4678887665 33 34456788888887532 0 1344678999999976553 332
Q ss_pred CcccccCCCcchHHHHHHHhccceecceeeEEE-eCCcccCccEEEEEeeeCCeeEe
Q 005717 102 VDIAALGTFEMGAKLLDTLINTTFEGLSGNFHL-VNGQLEPSAFEIFNVIGTSERVI 157 (681)
Q Consensus 102 ~~~~~~~~~~~G~~l~~~l~~~~f~GltG~i~F-~~G~~~~~~~~I~n~~~~~~~~v 157 (681)
+.+....|.|+||.++| .+|+.. ....+.+++++.++.|
T Consensus 278 ----------------~~~~~~~~~G~tG~l~~~~~g~~~-R~l~~~~~~~G~~~~~ 317 (325)
T 2h4a_A 278 ----------------RQVPGYRLSGLTGILSADTNCNVE-RDMTWYQYQDGAIVPV 317 (325)
T ss_dssp ----------------HHSTTCCEEETTEEEEECTTCBEE-EECEEEEEETTEEEEC
T ss_pred ----------------hhCCCCeeccCceeEEECCCCeEE-EeechhhccCCeEEEe
Confidence 12344689999999999 788775 5678888887766655
No 102
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=94.10 E-value=0.38 Score=48.60 Aligned_cols=63 Identities=8% Similarity=0.030 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCCcCeEEEeCCC-CCHHHHHHHHHhCccceEEEeEEEeeccccccc-ccccee
Q 005717 228 YDMFHAVLQVLEFPLPYEFVPFHD-GSFDELLHKIEKQEFDTAVGDTTIVANRSTFVD-FTLPYS 290 (681)
Q Consensus 228 idll~~l~~~l~f~~~~~~v~~~~-g~~~gli~~l~~g~~Dia~~~~~it~~R~~~vd-FT~P~~ 290 (681)
-.+.+.+.++.|-++++++.+.+. |+-..+++++..|.+|++.........+...+. |..||.
T Consensus 21 ~~fa~~v~e~s~G~i~i~~~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~lPfl 85 (301)
T 2pfy_A 21 RQFADEVKAATAGALEIKVQSNSTLLKRPEVKRGVQQGVVQIGEVLVSALGNEDPLFEIDSVPFL 85 (301)
T ss_dssp HHHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEEEEGGGGTTTCGGGGGGGSTTT
T ss_pred HHHHHHHHHHcCCeEEEEEccchhhCChHHHHHHHHCCCeeeehhhhhhhhccCcccccccCCcc
Confidence 356677888888777777777655 778899999999999998765433333332221 455655
No 103
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=94.10 E-value=0.14 Score=45.91 Aligned_cols=55 Identities=15% Similarity=0.256 Sum_probs=47.6
Q ss_pred CchhhHHHHHHHHHhccC-cc-cccccchhHHHHHHHHHHHHHHhHhhhhhhheeee
Q 005717 351 HQIGTIFWFSFSTLVFAH-RE-RVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTV 405 (681)
Q Consensus 351 ~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~ 405 (681)
.++.+++|+++.++..-| ++ .|.+..+|++.++|.++++.+.+...+++++.+..
T Consensus 51 ~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 107 (148)
T 3vou_A 51 LRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQL 107 (148)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999998866 44 48899999999999999999999999999876643
No 104
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=93.91 E-value=0.44 Score=48.14 Aligned_cols=63 Identities=13% Similarity=0.004 Sum_probs=43.4
Q ss_pred HHHHHHHHHHcCCCcCeEEEeCCC-CCHHHHHHHHHhCccceEEEeEEEeeccccccc-ccccee
Q 005717 228 YDMFHAVLQVLEFPLPYEFVPFHD-GSFDELLHKIEKQEFDTAVGDTTIVANRSTFVD-FTLPYS 290 (681)
Q Consensus 228 idll~~l~~~l~f~~~~~~v~~~~-g~~~gli~~l~~g~~Dia~~~~~it~~R~~~vd-FT~P~~ 290 (681)
-.+.+.+.++.|-.+++++.+.+. |+-..+++++..|.+|++.........+...+. |..||.
T Consensus 20 ~~fa~~v~~~s~G~i~i~~~~~g~Lg~~~~~~~~v~~G~id~~~~~~~~~~~~~p~~~~~~lPf~ 84 (301)
T 2pfz_A 20 TQFVKDVDSLSGGKLKITLHNNASLYKAPEIKRAVQGNQAQIGEILLTNFANEDPVYELDGLPFL 84 (301)
T ss_dssp HHHHHHHHHHHTTSCEEEEECTTSSSCGGGHHHHHHTTSSSEEEEEGGGGTTTCGGGTGGGSTTS
T ss_pred HHHHHHHHHHcCCeEEEEEccCcccCChHHHHHHHHCCceeeEechhhhccccCchhhhhcCCCC
Confidence 356677888888777788777655 778999999999999998765433333332221 445554
No 105
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=93.79 E-value=0.12 Score=52.84 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=52.1
Q ss_pred CCCCchhhHHHHHHHHHhccC-cc-cccccchhHHHHHHHHHHHHHHhHhhhhhhheeeeccc
Q 005717 348 PPQHQIGTIFWFSFSTLVFAH-RE-RVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRL 408 (681)
Q Consensus 348 ~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~ 408 (681)
....++.+++||++.++..-| ++ .|.+..+|++.+++.++++++.+.-++.+++.++.+..
T Consensus 92 ~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~ 154 (333)
T 1p7b_A 92 QSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRA 154 (333)
T ss_dssp SSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334578999999999998766 44 48889999999999999999999999999999886653
No 106
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=93.75 E-value=0.26 Score=46.73 Aligned_cols=83 Identities=13% Similarity=0.017 Sum_probs=58.1
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++||||+... +. ..+..+++..+.+..+ .+++++... +...++.+|.+|++|+++....
T Consensus 11 g~l~Ig~~~~--~~---------------~~~l~~~l~~~~~~~P-~v~i~~~~~---~~~~~~~~l~~g~~Dl~i~~~~ 69 (232)
T 3ho7_A 11 GRLNIAVLPT--IA---------------PYLLPRVFPIWKKELA-GLEIHVSEM---QTSRCLASLLSGEIDMAIIASK 69 (232)
T ss_dssp EEEEEEECTT--TH---------------HHHHHHHHHHHHHHST-TEEEEEEEC---CHHHHHHHHHHTSCSEEEESSC
T ss_pred eeEEEEeccc--cc---------------hhhhHHHHHHHHHHCC-CcEEEEEeC---CHHHHHHHHHcCCCCEEEEcCC
Confidence 6789988652 11 1356788888888876 366777764 7889999999999999987532
Q ss_pred EeeccccccccccceeecceEEEEEecc
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVKD 302 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~~ 302 (681)
.. ...+. ..++....+++++++..
T Consensus 70 ~~---~~~l~-~~~l~~~~~~~v~~~~h 93 (232)
T 3ho7_A 70 AE---TEGLE-DDLLYYEEFLGYVSRCE 93 (232)
T ss_dssp CC---CTTEE-EEEEEEEEEEEEECTTS
T ss_pred CC---CCCeE-EEEecccCEEEEEcCCC
Confidence 22 12222 46778888888887653
No 107
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=93.71 E-value=0.19 Score=50.68 Aligned_cols=60 Identities=10% Similarity=0.107 Sum_probs=51.3
Q ss_pred CCCCchhhHHHHHHHHHhccC-cc-cccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecc
Q 005717 348 PPQHQIGTIFWFSFSTLVFAH-RE-RVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQR 407 (681)
Q Consensus 348 ~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~ 407 (681)
....++.+++||++.++..-| ++ .|.+..+|++.+++.++++++.+..++.+++.++.+.
T Consensus 78 ~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~ 139 (301)
T 1xl4_A 78 ARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPT 139 (301)
T ss_dssp SCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 345678999999999998766 44 4889999999999999999999999999999887543
No 108
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=93.70 E-value=0.17 Score=48.72 Aligned_cols=74 Identities=7% Similarity=0.192 Sum_probs=57.4
Q ss_pred HHHHHHhhhhhcccCCCCCCCCCCchhhHHHHHHHHHhccC-cc-cccccchhHHHHHHHHHHHHHHhHhhhhhhheeee
Q 005717 328 IFTGLVVWVLEHRINTEFRGPPQHQIGTIFWFSFSTLVFAH-RE-RVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTV 405 (681)
Q Consensus 328 ~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~ 405 (681)
++.+.+++.+|+..+ ++...++.+++|+++.++..-| ++ .|.+..+|++.++++++++.+.+...+.+++.++.
T Consensus 145 ~~~~~~~~~~e~~~~----~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 145 LYGAFAIYIVEYPDP----NSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHHHHTTSSST----TCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCc----CCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666665321 2234589999999999998766 44 48899999999999999999999999999987753
No 109
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=93.69 E-value=0.53 Score=43.85 Aligned_cols=70 Identities=9% Similarity=0.065 Sum_probs=49.8
Q ss_pred eehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEEEeeccccccccccceeecceEEEEEecc
Q 005717 225 GFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSMLVLVKD 302 (681)
Q Consensus 225 G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~it~~R~~~vdFT~P~~~~~~~~vv~~~~ 302 (681)
.+-.+++..+.+..+ ++++++... ....+..+|.+|++|+++.... .....+. ..|+....+++++++..
T Consensus 17 ~~l~~~l~~~~~~~P-~i~i~i~~~---~~~~~~~~l~~g~~Dl~i~~~~---~~~~~~~-~~~l~~~~~~~v~~~~~ 86 (219)
T 3jv9_A 17 YLLPKLIVSLRRTAP-KMPLMLEEN---YTHTLTESLKRGDVDAIIVAEP---FQEPGIV-TEPLYDEPFFVIVPKGH 86 (219)
T ss_dssp HHHHHHHHHHHHHST-TCCEEEEEE---CHHHHHHHHHHTSSSEEEEESS---CCCTTEE-EEEEEEEEEEEEEETTC
T ss_pred HHHHHHHHHHHHHCC-CcEEEEEeC---CcHHHHHHHHcCCCCEEEEcCC---CCCCCee-EEEeeeceEEEEEeCCC
Confidence 355678888888875 366777764 7789999999999999987432 1122222 46777888888888654
No 110
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=93.62 E-value=0.84 Score=43.55 Aligned_cols=193 Identities=10% Similarity=0.026 Sum_probs=115.6
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++||||+.... ...+...++..+.+..+ .+++++... +...++.+|.+|++|++++..
T Consensus 19 g~l~Ig~~~~~-----------------~~~~l~~~l~~f~~~~P-~i~l~~~~~---~~~~~~~~l~~g~~Dl~i~~~- 76 (241)
T 3oxn_A 19 QTFTIATTDYA-----------------MQTILPFALPRIYQEAP-NVSFNFLPL---QHDRLSDQLTYEGADLAICRP- 76 (241)
T ss_dssp CEEEEEECSHH-----------------HHHTHHHHHHHHHHHCT-TCEEEEEEC---CGGGHHHHHHTSCCSEEEECC-
T ss_pred ceEEEEechHH-----------------HHHHHHHHHHHHHHHCC-CCEEEEEEC---CcccHHHHHHcCCCCEEEecC-
Confidence 68999986521 12456788889988876 366777765 778999999999999998732
Q ss_pred EeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCchh
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQIG 354 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~ 354 (681)
......+. ..++....+++++++.....
T Consensus 77 --~~~~~~~~-~~~l~~~~~~~v~~~~hpl~------------------------------------------------- 104 (241)
T 3oxn_A 77 --TGPVEPLR-SEILGRVGVLCLLSKQHPLA------------------------------------------------- 104 (241)
T ss_dssp --SSCCTTEE-EEEEECCCEEEEEETTSGGG-------------------------------------------------
T ss_pred --CCCCccce-eEEeecccEEEEEeCCCCcc-------------------------------------------------
Confidence 22222232 46777888888887654311
Q ss_pred hHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCe-EEEecChhH
Q 005717 355 TIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYF-VGYQTNSFV 433 (681)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~-vg~~~~s~~ 433 (681)
. ..-+++||. +.+ +.+..+...
T Consensus 105 ------------------------------------------------------~-~~i~~~dL~--~~~~i~~~~~~~~ 127 (241)
T 3oxn_A 105 ------------------------------------------------------N-QEMSLDDYL--SHPHAMIAISDGV 127 (241)
T ss_dssp ------------------------------------------------------G-SCCCHHHHH--TSEEEECSCCHHH
T ss_pred ------------------------------------------------------c-CCCCHHHHh--cCCeEEEecCCCc
Confidence 0 134688998 443 344444443
Q ss_pred HHHHh---hhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcCCceEEECc--ccccCCcEEEecCCCC
Q 005717 434 KDLLT---KKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSRYMMVGP--TYRTDGFGFAFPLGSP 508 (681)
Q Consensus 434 ~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~l~~v~~--~~~~~~~~~~~~k~sp 508 (681)
...+. +.. .........++.+...+++..|.--+++.+.. ....... .++..+.. ......++++.+++.+
T Consensus 128 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~g~giailp~~~-~~~~~~~--~~l~~~~~~~~~~~~~~~l~~~~~~~ 203 (241)
T 3oxn_A 128 KALIEQALIDK-PQRKMVLRAYHLEAALAIVDTLPIIITVPADL-AYLVAER--YDLVVKPLPFQFTPFDYSMIWHARCE 203 (241)
T ss_dssp HHHHHHHSTTS-CCCEEEEECSSTHHHHHHC--CCCEEEEEHHH-HHHHHHH--TTEEEECCSSCCCCCCEEEEEEGGGT
T ss_pred cchhHHHHHhh-ccceEEEECCcHHHHHHHHhCCCeEEEcHHHH-HHHhccc--CCceEeCCCCCCCcccEEEEEcCcCC
Confidence 33331 222 33333346678888888888886656665543 3333322 14555532 3345678888888876
Q ss_pred ChHHHHHHHHhhcc
Q 005717 509 LVPYISRAILKVTE 522 (681)
Q Consensus 509 l~~~in~~Il~l~e 522 (681)
....+...+..+.+
T Consensus 204 ~~~~~~~~~~~l~~ 217 (241)
T 3oxn_A 204 HSPAQEWLRSVVRE 217 (241)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHH
Confidence 55555555544444
No 111
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=93.31 E-value=0.006 Score=56.20 Aligned_cols=71 Identities=15% Similarity=0.165 Sum_probs=56.1
Q ss_pred HHHhhhhhcccCCCCCCCCCCchhhHHHHHHHHHhccC-cc-cccccchhHHHHHHHHHHHHHHhHhhhhhhheeee
Q 005717 331 GLVVWVLEHRINTEFRGPPQHQIGTIFWFSFSTLVFAH-RE-RVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTV 405 (681)
Q Consensus 331 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~ 405 (681)
++++|.+++.. .++...++.+++||++.++..-| ++ .|.+..+|++.++|+++++++.+..++.+++.++.
T Consensus 50 a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~ 122 (166)
T 3pjs_K 50 SYLAVLAERGA----PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 122 (166)
T ss_dssp SSSSSSTTSSS----TTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSS
T ss_pred HHHHHHHhcCC----CCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555432 23334578999999999998766 44 48899999999999999999999999999999874
No 112
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=92.97 E-value=0.24 Score=54.97 Aligned_cols=124 Identities=10% Similarity=0.079 Sum_probs=70.5
Q ss_pred CchhhHHHHHHHHHhccC-cc-cccccchhHHHHHHHHHHHHHHhHhhhh-hhheeeec----ccCCC-CCCHHHHHhCC
Q 005717 351 HQIGTIFWFSFSTLVFAH-RE-RVVNNLSRFVLIIWVFVVLILTQSYTAS-LTSMLTVQ----RLQPS-FTDVKDIQKNG 422 (681)
Q Consensus 351 ~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~l~~~w~~~~lil~s~YtA~-L~s~LT~~----~~~~~-i~s~~dL~~~~ 422 (681)
.++.+++||++.++..-| ++ .|.+..+|++.++|.++++.+.++..+. ++++++.. ..... .....+.. .
T Consensus 50 ~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 127 (565)
T 4gx0_A 50 YSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIELPDDT--R 127 (565)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCCCCTTC--C
T ss_pred CchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc--C
Confidence 378999999999998766 44 4788899999999999999888777776 44444322 11111 11111111 2
Q ss_pred CeEEEe-cChhHHHHHhhhcCCccccccccCChhHHHHHHccC-cceEEecchhhHH
Q 005717 423 YFVGYQ-TNSFVKDLLTKKLNFNETRLKNYTTSEDYHDALSNG-EVAAIFDEIPYIK 477 (681)
Q Consensus 423 ~~vg~~-~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g-~~~a~i~e~~~~~ 477 (681)
..+.+. .|..-.... +.+.-....+...+..++..+.+.+. ++.++..+...-+
T Consensus 128 ~hviI~G~g~~g~~la-~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~ 183 (565)
T 4gx0_A 128 GHILIFGIDPITRTLI-RKLESRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAH 183 (565)
T ss_dssp SCEEEESCCHHHHHHH-HHTTTTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHH
T ss_pred CeEEEECCChHHHHHH-HHHHHCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHH
Confidence 234433 333333333 32222223455555555555555444 5666666554333
No 113
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=92.24 E-value=2 Score=42.70 Aligned_cols=86 Identities=6% Similarity=-0.005 Sum_probs=55.3
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++||||+... +. ..+..+++..+.+..+ .+++++... +...++..|.+|++|+++....
T Consensus 101 ~~l~Ig~~~~--~~---------------~~~l~~~l~~f~~~~P-~i~i~l~~~---~~~~~~~~l~~g~~Dl~i~~~~ 159 (310)
T 2esn_A 101 RTFVFAATDY--TA---------------FALLPPLMNRLQHSAP-GVRLRLVNA---ERKLSVEALASGRIDFALGYDE 159 (310)
T ss_dssp CEEEEECCHH--HH---------------HHHHHHHHHHHHHHST-TCEEEEECC---SSSCCHHHHHHTSSSEEEECCS
T ss_pred ceEEEEeChH--HH---------------HHHHHHHHHHHHHHCC-CeEEEEEeC---CcccHHHHHHcCCCCEEEecCc
Confidence 6799997641 11 1455678888888876 366777664 5567888999999999986310
Q ss_pred EeeccccccccccceeecceEEEEEecc
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVKD 302 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~~ 302 (681)
..+.....+. ..|+....+++++++..
T Consensus 160 ~~~~~~~~l~-~~~l~~~~~~~v~~~~~ 186 (310)
T 2esn_A 160 EHERLPEGIQ-AHDWFADRYVVVARRDH 186 (310)
T ss_dssp TTCCCCTTEE-EEEEEEECEEEEEESSC
T ss_pred ccccCCcCcc-eeeeeccceEEEEeCCC
Confidence 0111111222 35777888888887553
No 114
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=92.17 E-value=0.79 Score=43.26 Aligned_cols=71 Identities=6% Similarity=-0.012 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCc-cceEEEeEEEeec---cccccc--cccceeecceEEEEEe
Q 005717 227 CYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQE-FDTAVGDTTIVAN---RSTFVD--FTLPYSESGVSMLVLV 300 (681)
Q Consensus 227 ~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~-~Dia~~~~~it~~---R~~~vd--FT~P~~~~~~~~vv~~ 300 (681)
.-++++.+.++-|. ++++... +-..++.+|.+|+ +|+++..-....+ ....+. -..|+....+++++++
T Consensus 14 l~~~~~~F~~~p~i--~v~~~~~---~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~ 88 (231)
T 1atg_A 14 LEQLAGQFAKQTGH--AVVISSG---SSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLVLWSAK 88 (231)
T ss_dssp HHHHHHHHHHHHCC--CEEEEEE---CHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEEEEESS
T ss_pred HHHHHHHHHhccCC--eEEEEEC---CcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeeeeEEEEEcC
Confidence 34677777777664 4555443 5688999999998 9997652111111 111111 2467888888888875
Q ss_pred cc
Q 005717 301 KD 302 (681)
Q Consensus 301 ~~ 302 (681)
..
T Consensus 89 ~~ 90 (231)
T 1atg_A 89 PG 90 (231)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 115
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=91.91 E-value=0.69 Score=49.31 Aligned_cols=106 Identities=13% Similarity=0.093 Sum_probs=62.2
Q ss_pred HHHH-HhCCC--eEEEe-cChhHHH----HHhhhcCCccc---cccccCChhHHHHHHccCcceEEecchhhHHHHHhhc
Q 005717 415 VKDI-QKNGY--FVGYQ-TNSFVKD----LLTKKLNFNET---RLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASY 483 (681)
Q Consensus 415 ~~dL-~~~~~--~vg~~-~~s~~~~----~l~~~~~~~~~---~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~ 483 (681)
++|| .+.|+ +||+. .++.... +| +..+++.. +++.+ ...+...+|.+|++|+++...++......+.
T Consensus 153 i~dL~k~~GK~~~Iav~~~gs~~~~~l~~~L-~~~Gl~p~~DV~~v~~-~~~~~~~aL~~G~iDa~~~~eP~~~~a~~~g 230 (429)
T 2i49_A 153 IKGFNKTNGRKFKAAHTFPNVNQDFWIRYWF-AAGGVDPDTDIDLLAV-PPAETVQGMRNGTMDAFSTGDPWPYRIVTEN 230 (429)
T ss_dssp HHTHHHHHSSCCEEEESSTTSHHHHHHHHHH-HHTTCCTTTTSEEEEC-CHHHHHHHHHHTCCCEEEEETTHHHHHHHTT
T ss_pred HHHHHHhCCCCcEEEEeCCCCHHHHHHHHHH-HhcCCCCCCcEEEEEC-ChHHHHHHHHcCCccEEEeccchHHHHHHCC
Confidence 6888 65576 89997 5665432 33 44466432 33334 5678899999999999998777776555543
Q ss_pred CCce-EEECccccc-CCcEEEecCC----CC-----ChHHHHHHHHhhcc
Q 005717 484 CSRY-MMVGPTYRT-DGFGFAFPLG----SP-----LVPYISRAILKVTE 522 (681)
Q Consensus 484 c~~l-~~v~~~~~~-~~~~~~~~k~----sp-----l~~~in~~Il~l~e 522 (681)
-... ...++.+.. ....+++++. .| ++..+.++...+.+
T Consensus 231 ~g~~~~~~~~~~~~~~~~vl~~~~~~~~~~Pe~v~~~~~A~~~A~~~~~~ 280 (429)
T 2i49_A 231 IGYMAGLTAQIWPYHPEEYLAIRADWVDKNPKATKALLKGIMEAQQWIDD 280 (429)
T ss_dssp SCEEEEEHHHHSTTCCCCEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHTS
T ss_pred CCEEEEechHhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 2111 112222222 2345666654 34 44455555556665
No 116
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=91.82 E-value=3 Score=39.08 Aligned_cols=70 Identities=13% Similarity=0.002 Sum_probs=50.7
Q ss_pred eehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEEEeeccccccccccceeecceEEEEEecc
Q 005717 225 GFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSMLVLVKD 302 (681)
Q Consensus 225 G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~it~~R~~~vdFT~P~~~~~~~~vv~~~~ 302 (681)
.+-..++..+.++.+ .+++++... +...++++|.+|++|++++.. +.....++ ..|+....+++++++..
T Consensus 21 ~~lp~~l~~f~~~~P-~v~l~l~~~---~~~~l~~~L~~g~iDl~i~~~---~~~~~~l~-~~~l~~~~~~~v~~~~h 90 (218)
T 2y7p_A 21 YFMPPLMEALAQRAP-HIQISTLRP---NAGNLKEDMESGAVDLALGLL---PELQTGFF-QRRLFRHRYVCMFRKDH 90 (218)
T ss_dssp HHHHHHHHHHHHHCT-TCEEEEECC---CTTTHHHHHHHTSSCEEEECC---TTCCTTEE-EEEEEEECEEEEEETTC
T ss_pred HHHHHHHHHHHHHCC-CCEEEEEeC---CcccHHHHHhCCCceEEEecC---CCCCccee-EEEeeeccEEEEEcCCC
Confidence 456678888888886 366777664 678999999999999998632 22222333 35788889999988664
No 117
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=91.82 E-value=1.2 Score=44.41 Aligned_cols=85 Identities=7% Similarity=-0.019 Sum_probs=57.3
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++||||+..... ..+...++..+.+..+ .+++++... ..+.++..|.+|++|+++....
T Consensus 92 g~l~I~~~~~~~-----------------~~~l~~~l~~f~~~~P-~i~i~l~~~---~~~~~~~~l~~g~~Dlai~~~~ 150 (305)
T 3fxq_A 92 GHITFAASPAIA-----------------LAALPLALASFAREFP-DVTVNVRDG---MYPAVSPQLRDGTLDFALTAAH 150 (305)
T ss_dssp TEEEEEECHHHH-----------------HTHHHHHHHHHHHHCT-TCEEEEEEC---CTTTTHHHHHHTSSSEEEEECC
T ss_pred ceEEEEechHHH-----------------HHHHHHHHHHHHHHCC-CCEEEEEEC---CHHHHHHHHHcCCCCEEEecCC
Confidence 579999865211 2456778888888887 366777764 6678899999999999986321
Q ss_pred EeeccccccccccceeecceEEEEEecc
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVKD 302 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~~ 302 (681)
.. .....+ -..|+....+++++++..
T Consensus 151 ~~-~~~~~l-~~~~L~~~~~~~v~~~~h 176 (305)
T 3fxq_A 151 KH-DIDTDL-EAQPLYVSDVVIVGQRQH 176 (305)
T ss_dssp GG-GSCTTE-EEEEEEECCEEEEEETTC
T ss_pred CC-CCccCe-eEEEeecCcEEEEEcCCC
Confidence 11 001112 246788888888888654
No 118
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=91.46 E-value=3 Score=39.42 Aligned_cols=83 Identities=13% Similarity=0.203 Sum_probs=57.3
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++||||+..... ..+-..++..+.++.+ .+++++... +...++.+|.+|++|+++...
T Consensus 30 g~l~Ig~~~~~~-----------------~~~l~~~l~~f~~~~P-~v~l~~~~~---~~~~~~~~l~~g~~Dl~i~~~- 87 (238)
T 2hxr_A 30 GSLRIAVTPTFT-----------------SYFIGPLMADFYARYP-SITLQLQEM---SQEKIEDMLCRDELDVGIAFA- 87 (238)
T ss_dssp -CEEEEECHHHH-----------------TTTHHHHHHHHHHHCT-TSCEEEEEC---CHHHHHHHHHTTSCSEEEEES-
T ss_pred CeEEEeechhhH-----------------HHHHHHHHHHHHHhCC-CcEEEEEEC---CHHHHHHHHHcCCCcEEEEcC-
Confidence 579999765211 2456678889998887 467888775 778999999999999998632
Q ss_pred EeeccccccccccceeecceEEEEEecc
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVKD 302 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~~ 302 (681)
+.....+. +.++....+++++++..
T Consensus 88 --~~~~~~l~-~~~l~~~~~~~v~~~~h 112 (238)
T 2hxr_A 88 --PVHSPELE-AIPLLTESLALVVAQHH 112 (238)
T ss_dssp --SCCCTTEE-EEEEEEEEEEEEEETTS
T ss_pred --CCCcccce-eeeeccCcEEEEEcCCC
Confidence 11122222 35788888888888654
No 119
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=91.45 E-value=0.59 Score=47.56 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=50.1
Q ss_pred CchhhHHHHHHHHHhccC-cc-cccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecc
Q 005717 351 HQIGTIFWFSFSTLVFAH-RE-RVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQR 407 (681)
Q Consensus 351 ~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~ 407 (681)
.++.+++|+++.++..-| ++ .|.+..+|++.+++.++++++.+.-++.+++.++.++
T Consensus 77 ~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~ 135 (321)
T 2qks_A 77 AGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135 (321)
T ss_dssp TTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred cchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999998766 44 4889999999999999999999999999999887654
No 120
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=91.26 E-value=0.58 Score=48.09 Aligned_cols=65 Identities=12% Similarity=0.142 Sum_probs=43.0
Q ss_pred CCCCHHHHHhCCCeEEEecChh---HHHHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHH
Q 005717 411 SFTDVKDIQKNGYFVGYQTNSF---VKDLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKI 478 (681)
Q Consensus 411 ~i~s~~dL~~~~~~vg~~~~s~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~ 478 (681)
.+++++||. |++||+..+.. ...+| ++.+.....+...........++.+|++|+.+.-.++...
T Consensus 102 ~~~~~~dLk--GK~ig~~~~~~~~~l~~~L-~~~Gl~~~dv~~v~~~~~~~~al~~G~vDa~~~~~p~~~~ 169 (342)
T 4esw_A 102 ITSDFQSLK--GKRIGYVGEFGKIQVDELT-KHYGMTPDDYVAVRCGMNVAKYILEGTIDCGIGIECIQQV 169 (342)
T ss_dssp CCSSGGGGT--TCEEEESSSHHHHHHHHHH-GGGTCCGGGSEEEECGGGHHHHHHHTSSSEEEEETTTHHH
T ss_pred ccCCHHHhC--CCEEEecCCchHHHHHHHH-HHcCCChhheEEecCCHHHHHHHHcCCCCEEEEeccchHH
Confidence 467899999 99999864321 22333 4556666555555544566788999999998876555443
No 121
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=91.13 E-value=0.18 Score=51.92 Aligned_cols=125 Identities=9% Similarity=0.041 Sum_probs=73.4
Q ss_pred chhhHHHHHHHHHhccC-cc-cccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEec
Q 005717 352 QIGTIFWFSFSTLVFAH-RE-RVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQT 429 (681)
Q Consensus 352 ~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~ 429 (681)
++.+++||++.++..-| +. .|.+..+|++.++|.++++++.+...+.+++.++..+....... ....+ ..++.+..
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~viI~G 122 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGL-IDVAK-SRHVVICG 122 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-------------------CEEEEES
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcc-cCCEEEEC
Confidence 67889999999998766 44 48899999999999999999999999999999987665432221 11111 22344433
Q ss_pred -ChhHHHHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHh
Q 005717 430 -NSFVKDLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLA 481 (681)
Q Consensus 430 -~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~ 481 (681)
|..-.... +...-... +...+..++..+ +.+.++.++..+....+.+.+
T Consensus 123 ~G~~g~~l~-~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~ 172 (336)
T 1lnq_A 123 WSESTLECL-RELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEK 172 (336)
T ss_dssp CCHHHHHHH-TTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHH
T ss_pred CcHHHHHHH-HHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHh
Confidence 33333333 32222223 555566555555 655556677776654444443
No 122
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=90.82 E-value=0.29 Score=50.78 Aligned_cols=75 Identities=15% Similarity=0.167 Sum_probs=57.9
Q ss_pred HHHHHHHhhhhhcccCCCCCCCCCCchhhHHHHHHHHHhccC-cc-cccccchhHHHHHHHHHHHHHHhHhhhhhhheee
Q 005717 327 FIFTGLVVWVLEHRINTEFRGPPQHQIGTIFWFSFSTLVFAH-RE-RVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLT 404 (681)
Q Consensus 327 ~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT 404 (681)
+++.+++++.+++..+.+ ...++.+++|+++.++..-| ++ .|.+..+|++.++++++++++.+..++.+++.+.
T Consensus 140 ~~~~a~~~~~~e~~~~~~----~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~ 215 (355)
T 3beh_A 140 LFAVALAAYVIERDIQPE----KFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFY 215 (355)
T ss_dssp HHHHHHHHHHHHTTTCHH----HHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCc----ccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334466667777643221 12468899999999998766 44 5889999999999999999999999999988775
Q ss_pred e
Q 005717 405 V 405 (681)
Q Consensus 405 ~ 405 (681)
.
T Consensus 216 ~ 216 (355)
T 3beh_A 216 Q 216 (355)
T ss_dssp H
T ss_pred H
Confidence 3
No 123
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=90.52 E-value=4.4 Score=38.91 Aligned_cols=113 Identities=12% Similarity=-0.002 Sum_probs=63.5
Q ss_pred CCCHHHHHhCCCeEEEec------ChhHHHHHhhhcCCc---cccccccCChhHHHHHHccCcceEEecchhhHHHHHhh
Q 005717 412 FTDVKDIQKNGYFVGYQT------NSFVKDLLTKKLNFN---ETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLAS 482 (681)
Q Consensus 412 i~s~~dL~~~~~~vg~~~------~s~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~ 482 (681)
++++.||.+ +.++++.. |......| +..++- ..++....+..+....+.+|++|+.+....... ..
T Consensus 107 ~~~l~~l~~-~~~iai~~p~~~p~G~~a~~~l-~~~g~~~~l~~~~~~~~~~~~~~~~v~~Ge~d~gi~~~s~a~---~~ 181 (237)
T 3r26_A 107 KTNWTSLLN-GGRLAVGDPEHVPAGIYAKEAL-QKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAV---AS 181 (237)
T ss_dssp TCCHHHHHT-TCCEEEECTTTCHHHHHHHHHH-HHTTCHHHHGGGEEEESSHHHHHHHHHTTSSSEEEEEHHHHH---HC
T ss_pred hHhHHHhcC-CCeEEEeCCCCCChHHHHHHHH-HHcCCHHHhhhcEEecCCHHHHHHHHHcCCCCEEEEEecccc---cC
Confidence 456777664 34677653 33444555 433431 234555567788888999999998877544332 11
Q ss_pred cCCceEE---ECccc-ccCCcEEEecCCCCChHHHHHHHHhhccCccHHHHHHHHH
Q 005717 483 YCSRYMM---VGPTY-RTDGFGFAFPLGSPLVPYISRAILKVTEDKEKMENIEKAL 534 (681)
Q Consensus 483 ~c~~l~~---v~~~~-~~~~~~~~~~k~spl~~~in~~Il~l~e~~G~l~~i~~kw 534 (681)
. ++.+ +++.. ....+++++.|+++- +.-.+.+.-|. + -.-+++..++
T Consensus 182 ~--~~~~v~~~P~~~~~~~~~~~ai~k~~~~-~~A~~Fi~fl~-S-~eaq~i~~~~ 232 (237)
T 3r26_A 182 K--GVKVVATFPEDSHKKVEYPVAVVEGHNN-ATVKAFYDYLK-G-PQAAEIFKRY 232 (237)
T ss_dssp S--SEEEEEECCGGGSCCEEEEEEEBTTCCS-HHHHHHHHHHT-S-HHHHHHHHHT
T ss_pred C--CCeEEEECCcccCCeeeeeEEEEcCCCC-HHHHHHHHHHc-C-HHHHHHHHHc
Confidence 1 3433 33332 334577888899875 44444444444 3 3455555554
No 124
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=89.11 E-value=2.2 Score=42.24 Aligned_cols=83 Identities=13% Similarity=0.104 Sum_probs=55.0
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++||||+... +. ..+..+++..+.++.+ .+++++... +...++.+|.+|++|+++...
T Consensus 95 g~l~i~~~~~--~~---------------~~~l~~~l~~f~~~~P-~i~i~l~~~---~~~~~~~~l~~g~~Dl~i~~~- 152 (306)
T 3fzv_A 95 GQIDIGCFET--VA---------------PLYLPGLIAGFRQAYP-GVEIRIRDG---EQQELVQGLTSGRFDLAFLYE- 152 (306)
T ss_dssp EEEEEEEEGG--GH---------------HHHHHHHHHHHHHHCT-TEEEEEEEE---CHHHHHHHHHHTSCSEEEECS-
T ss_pred ceEEEEechh--hh---------------HHHHHHHHHHHHHHCC-CeEEEEEeC---CHHHHHHHHHCCCccEEEEec-
Confidence 6799998752 11 2456678888888876 356777664 788999999999999987632
Q ss_pred Eeecccccccccccee-ecceEEEEEecc
Q 005717 275 IVANRSTFVDFTLPYS-ESGVSMLVLVKD 302 (681)
Q Consensus 275 it~~R~~~vdFT~P~~-~~~~~~vv~~~~ 302 (681)
......+. ..|+. ....++++++..
T Consensus 153 --~~~~~~l~-~~~l~~~~~~~~v~~~~~ 178 (306)
T 3fzv_A 153 --HDLDSTIE-TEPLMPPQRPHALLPEGH 178 (306)
T ss_dssp --SSCCTTEE-EEESSCCBCCEEEEETTC
T ss_pred --cccccccc-eeeeeeccccEEEecCCC
Confidence 12222222 34455 666677776554
No 125
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=88.85 E-value=2.2 Score=42.19 Aligned_cols=105 Identities=9% Similarity=0.030 Sum_probs=57.1
Q ss_pred CCCCHHHHHhCCC--eEEEecChhH-----HHHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhc
Q 005717 411 SFTDVKDIQKNGY--FVGYQTNSFV-----KDLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASY 483 (681)
Q Consensus 411 ~i~s~~dL~~~~~--~vg~~~~s~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~ 483 (681)
.|++++||..... .+|...+... ...+ +..++....+... +......++.+|+++++....+..... ++
T Consensus 124 ~i~si~DL~g~~~~~~~g~~~~~~~~~~g~~~~~-~~yGl~~~~~~~~-~~~~~~~Al~~g~vd~~~~~~p~~~~~--~~ 199 (275)
T 1sw5_A 124 GVEKISDLAEFADQLVFGSDPEFASRPDGLPQIK-KVYGFEFKEVKQM-EPTLMYEAIKNKQVDVIPAYTTDSRVD--LF 199 (275)
T ss_dssp TCCBGGGGTTTGGGCEEEECHHHHHSTTSHHHHH-HHHTCCCSEEEEC-CGGGHHHHHHTTSCSEEEEETTCHHHH--HT
T ss_pred CCCcHHHHHhhhcceEeccCcccccccchHHHHH-HhcCCCcccccCC-CHHHHHHHHHcCCCeEEEEeCCCcchh--cC
Confidence 5899999984422 5554332111 1133 4445543344444 556788999999999998877765532 22
Q ss_pred CCceEEECcc---cccCCcEEEecCCCCChHHHHHHHHhhc
Q 005717 484 CSRYMMVGPT---YRTDGFGFAFPLGSPLVPYISRAILKVT 521 (681)
Q Consensus 484 c~~l~~v~~~---~~~~~~~~~~~k~spl~~~in~~Il~l~ 521 (681)
+++++... +.......+++++..=.+.+-+.+.++.
T Consensus 200 --~l~~L~d~~~~~~~~~~~~v~~~~~~~~P~~~~~l~~l~ 238 (275)
T 1sw5_A 200 --NLKILEDDKGALPPYDAIIIVNGNTAKDEKLISVLKLLE 238 (275)
T ss_dssp --TEEECBCTTCCSCCCEEEEEECTTGGGCHHHHHHHHTTT
T ss_pred --CeEEccCCcccCCccceeeeeehhhccChHHHHHHHHHH
Confidence 45555432 2223334566655320034445555554
No 126
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=88.77 E-value=6 Score=37.02 Aligned_cols=196 Identities=12% Similarity=0.090 Sum_probs=117.4
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++||||+..... ..+-.+++..+.++.+ .+++++... +.+.++..|.+|++|++++..
T Consensus 14 g~lrIg~~~~~~-----------------~~~l~~~l~~f~~~~P-~v~l~l~~~---~~~~~~~~l~~g~~Dl~i~~~- 71 (228)
T 2fyi_A 14 GVLTIATTHTQA-----------------RYSLPEVIKAFRELFP-EVRLELIQG---TPQEIATLLQNGEADIGIASE- 71 (228)
T ss_dssp EEEEEEECHHHH-----------------HHTHHHHHHHHHHHCT-TEEEEEEEC---CHHHHHHHHHHTSCSEEEESS-
T ss_pred ceEEEeeccchH-----------------HHHHHHHHHHHHHHCC-CcEEEEEeC---CHHHHHHHHHcCCccEEEEec-
Confidence 679999865211 2456788889998886 467777764 788999999999999988631
Q ss_pred EeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCchh
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQIG 354 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~ 354 (681)
.......+. ..++....+++++++.....
T Consensus 72 -~~~~~~~l~-~~~l~~~~~~~v~~~~hpla------------------------------------------------- 100 (228)
T 2fyi_A 72 -RLSNDPQLV-AFPWFRWHHSLLVPHDHPLT------------------------------------------------- 100 (228)
T ss_dssp -SSTTCTTEE-EEEEEEECEEEEEETTCGGG-------------------------------------------------
T ss_pred -ccCCCCCce-EEEeeecceEEEecCCCCcc-------------------------------------------------
Confidence 111112222 35778888888887654211
Q ss_pred hHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCeEEEecChhHH
Q 005717 355 TIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYFVGYQTNSFVK 434 (681)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~vg~~~~s~~~ 434 (681)
....-+++||.+.. .+....++...
T Consensus 101 ------------------------------------------------------~~~~i~~~dL~~~~-~i~~~~~~~~~ 125 (228)
T 2fyi_A 101 ------------------------------------------------------QISPLTLESIAKWP-LITYRQGITGR 125 (228)
T ss_dssp ------------------------------------------------------TSSSCCHHHHTTSC-EEEECTTSTTH
T ss_pred ------------------------------------------------------ccCccCHHHHcCCC-eEEecCCccHH
Confidence 00234688988432 34444443322
Q ss_pred ----HHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcCCceEEECc--ccccCCcEEEecCCCC
Q 005717 435 ----DLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSRYMMVGP--TYRTDGFGFAFPLGSP 508 (681)
Q Consensus 435 ----~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~l~~v~~--~~~~~~~~~~~~k~sp 508 (681)
..+ +..++........++.+...+++..|.--+++.+... ... .. .++..+.- ......++++.+++.+
T Consensus 126 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~lv~~G~Gia~lp~~~~-~~~--~~-~~l~~~~~~~~~~~~~~~l~~~~~~~ 200 (228)
T 2fyi_A 126 SRIDDAF-ARKGLLADIVLSAQDSDVIKTYVALGLGIGLVAEQSS-GEQ--EE-ENLIRLDTRHLFDANTVWLGLKRGQL 200 (228)
T ss_dssp HHHHHHH-HHTTCCCCEEEEESSHHHHHHHHHHTSCEEEEEGGGG-STT--CC-TTEEEECCTTTSCCEEEEEEEETTCC
T ss_pred HHHHHHH-HHcCCCcceEEEeCCHHHHHHHHHhCCCEEEeehHhh-hhc--cc-CCeEEEECCCcccceEEEEEEeCCCc
Confidence 333 3334433333456788888888887765566554321 111 11 24555532 2223457888899888
Q ss_pred ChHHHHHHHHhhccC
Q 005717 509 LVPYISRAILKVTED 523 (681)
Q Consensus 509 l~~~in~~Il~l~e~ 523 (681)
+...+...+..+.+.
T Consensus 201 ~~~~~~~f~~~l~~~ 215 (228)
T 2fyi_A 201 QRNYVWRFLELCNAG 215 (228)
T ss_dssp BCHHHHHHHHHHCSS
T ss_pred CCHHHHHHHHHHHHh
Confidence 777777777666654
No 127
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=87.78 E-value=1.4 Score=41.16 Aligned_cols=70 Identities=10% Similarity=0.118 Sum_probs=50.5
Q ss_pred eehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEEEeeccccccccccceeecceEEEEEecc
Q 005717 225 GFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSMLVLVKD 302 (681)
Q Consensus 225 G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~it~~R~~~vdFT~P~~~~~~~~vv~~~~ 302 (681)
.+-.+++..+.++.+ .+++++... ....++.+|.+|++|+++... +.....+. ..|+....+++++++..
T Consensus 18 ~~l~~~l~~f~~~~P-~v~l~l~~~---~~~~~~~~l~~g~~Dl~i~~~---~~~~~~l~-~~~l~~~~~~~v~~~~h 87 (219)
T 1i6a_A 18 YLLPHIIPMLHQTFP-KLEMYLHEA---QTHQLLAQLDSGKLDAVILAL---VKESEAFI-EVPLFDEPMLLAIYEDH 87 (219)
T ss_dssp HHHHHHHHHHHHHCT-TEEEEEEEC---CHHHHHHHHHHTSCSEEEEEC---CGGGTTSE-EEEEEEEEEEEEEETTS
T ss_pred hhhhHHHHHHHHHCC-CeEEEEEEC---ChHHHHHHHHcCCeeEEEecC---CCCCCCcc-eeeeecccEEEEEcCCC
Confidence 456788888888886 466777764 789999999999999988632 22222232 35788888888888654
No 128
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=87.74 E-value=5.6 Score=38.77 Aligned_cols=70 Identities=10% Similarity=0.009 Sum_probs=43.1
Q ss_pred HHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCc-cceEEEeEEEeec---cccccc--cccceeecceEEEEEec
Q 005717 228 YDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQE-FDTAVGDTTIVAN---RSTFVD--FTLPYSESGVSMLVLVK 301 (681)
Q Consensus 228 idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~-~Dia~~~~~it~~---R~~~vd--FT~P~~~~~~~~vv~~~ 301 (681)
-+|++.+.++.|.+ +++.. ++-..++.++.+|. +|+.++.-.-..+ ....++ -..+|....+++++++.
T Consensus 38 ~~l~~~Fe~~~gi~--V~~~~---~~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~~~~~~~~a~~~lvl~~~~~ 112 (253)
T 3gzg_A 38 DEAATAYEKATGTP--VRVSY---AASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLGNTLVLVAPAS 112 (253)
T ss_dssp HHHHHHHHHHHSCC--EEEEE---ECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEEECEEEEEETT
T ss_pred HHHHHHHHHHhCCe--EEEEE---CChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcCCCcceeEEeeEEEEEEECC
Confidence 36777777777855 44433 35577888998886 8988763211111 112222 22567778899998875
Q ss_pred c
Q 005717 302 D 302 (681)
Q Consensus 302 ~ 302 (681)
.
T Consensus 113 ~ 113 (253)
T 3gzg_A 113 S 113 (253)
T ss_dssp C
T ss_pred C
Confidence 4
No 129
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=87.20 E-value=1.2 Score=48.48 Aligned_cols=72 Identities=11% Similarity=0.115 Sum_probs=53.8
Q ss_pred HHHHhhhhhcccCCCCCCCCCCchhhHHHHHHHHHhccC-cc-cccccchhHHHHHHHHHHHHHHhHhhhhhhheeee
Q 005717 330 TGLVVWVLEHRINTEFRGPPQHQIGTIFWFSFSTLVFAH-RE-RVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTV 405 (681)
Q Consensus 330 v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~ 405 (681)
.+.+++.+++.. ......++.+++|+++.++..-| +. .|.+..+|+++++++++++++.+.+.|.+.+.+..
T Consensus 357 f~~~~~~~e~~~----~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~ 430 (514)
T 2r9r_B 357 FSSAVYFAEADE----RDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 430 (514)
T ss_dssp HHHHHHHHHTTC----TTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHhhhheeeccC----CCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555422 12233578999999999998766 43 47888899999999999999999999998875543
No 130
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=86.48 E-value=5.3 Score=36.62 Aligned_cols=83 Identities=17% Similarity=0.127 Sum_probs=56.9
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++||||+..... ..+-.+++..+.++.+ .+++++... +...+..+|.+|++|+++...
T Consensus 5 g~l~Ig~~~~~~-----------------~~~l~~~l~~f~~~~P-~i~i~l~~~---~~~~l~~~l~~g~~Dl~i~~~- 62 (209)
T 2ql3_A 5 GPIAVGCYPALG-----------------PTILPSMLYAFTAEYP-RASVEFRED---TQNRLRTQLEGGELDVAIVYD- 62 (209)
T ss_dssp EEEEEEECGGGT-----------------TTTHHHHHHHHHHHCT-TEEEEEEEC---CHHHHHHHHHTTSCSEEEEES-
T ss_pred eeEEEeechhhh-----------------hhhHHHHHHHHHHHCC-CceEEEEEC---cHHHHHHHHHcCCccEEEEec-
Confidence 578998865211 1345688899998886 366777764 788999999999999988632
Q ss_pred EeeccccccccccceeecceEEEEEecc
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVKD 302 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~~ 302 (681)
......+. +.++....+++++++..
T Consensus 63 --~~~~~~l~-~~~l~~~~~~~v~~~~h 87 (209)
T 2ql3_A 63 --LDLSPEWQ-TVPLMTREPMVVLGAEH 87 (209)
T ss_dssp --SSCCTTEE-EEEEEEECCEEEEETTC
T ss_pred --CCCCCCce-EEEeecCceEEEEeCCC
Confidence 11112222 35777888888887543
No 131
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=85.99 E-value=1 Score=44.67 Aligned_cols=67 Identities=15% Similarity=0.226 Sum_probs=50.5
Q ss_pred CchhhHHHHHHHHHhccC-cc-ccccc-------chhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHH
Q 005717 351 HQIGTIFWFSFSTLVFAH-RE-RVVNN-------LSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKD 417 (681)
Q Consensus 351 ~~~~~~~~~~~~~l~~~~-~~-~~~s~-------~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~d 417 (681)
.++.+++|+++-++..-| ++ .|.+. ..|++.++|+++++.+.++..+.+++.+...+....+..-+|
T Consensus 200 ~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~~~~~~~~~ 275 (280)
T 3ukm_A 200 WNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVKKD 275 (280)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTTC----
T ss_pred CchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 468899999999998766 43 35544 369999999999999999999999998877666555444333
No 132
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=85.83 E-value=8.6 Score=38.69 Aligned_cols=60 Identities=12% Similarity=0.082 Sum_probs=44.3
Q ss_pred CCCCCHHHHHhCCCeEEEecChhHHHHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhH
Q 005717 410 PSFTDVKDIQKNGYFVGYQTNSFVKDLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYI 476 (681)
Q Consensus 410 ~~i~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~ 476 (681)
.+|++++||. |.++.+.........+ +.++.... .-...|...+|.+|.+|+.....+.+
T Consensus 133 ~pI~s~~Dlk--GlKiRv~~~~~~~~~~-~alGa~pv----~m~~~Evy~ALq~G~vDg~~~~~~~~ 192 (312)
T 2xwv_A 133 RAINSIADMK--GLKLRVPNAATNLAYA-KYVGASPT----PMAFSEVYLALQTNAVDGQENPLAAV 192 (312)
T ss_dssp SCCCSGGGGT--TCEEEECSCHHHHHHH-HHHTCEEE----ECCGGGHHHHHHTTSSSEEEEEHHHH
T ss_pred CCcCCHHHhC--CCEEEeCCCHHHHHHH-HHcCCeee----ecCHHHHHHHHHcCCcceEeccHHHH
Confidence 5899999999 9999887644444556 55665321 22567899999999999998876655
No 133
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=85.61 E-value=6 Score=39.45 Aligned_cols=70 Identities=13% Similarity=0.002 Sum_probs=47.2
Q ss_pred eehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEEEeeccccccccccceeecceEEEEEecc
Q 005717 225 GFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSMLVLVKD 302 (681)
Q Consensus 225 G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~it~~R~~~vdFT~P~~~~~~~~vv~~~~ 302 (681)
.+...++..+.+..+ .+.+++... +...++.+|.+|++|+++... +.....+. ..|+....+++++++..
T Consensus 118 ~~l~~~l~~f~~~~P-~v~l~l~~~---~~~~~~~~l~~g~~Dl~i~~~---~~~~~~l~-~~~l~~~~~~~v~~~~h 187 (315)
T 1uth_A 118 YFMPPLMEALAQRAP-HIQISTLRP---NAGNLKEDMESGAVDLALGLL---PELQTGFF-QRRLFRHRYVCMFRKDH 187 (315)
T ss_dssp HHHHHHHHHHHHHCT-TCEEEEECT---TSSCHHHHHHHTSCCEEEECC---TTCCTTEE-EEEEEEECEEEEEETTC
T ss_pred HHHHHHHHHHHHHCC-CcEEEEEeC---CcccHHHHHHCCCCCEEEecC---CCCCCCce-EEEeeccceEEEEeCCC
Confidence 345677888888876 356777664 567899999999999998632 11112222 35777788888887543
No 134
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=85.48 E-value=10 Score=36.55 Aligned_cols=36 Identities=8% Similarity=0.142 Sum_probs=28.8
Q ss_pred HHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEE
Q 005717 231 FHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAV 270 (681)
Q Consensus 231 l~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~ 270 (681)
++...++.| ++++++.+ .+|.....+|.+|++|+..
T Consensus 21 ~~~~~~~~G--l~ve~~~f--~d~~~~n~AL~~G~iD~n~ 56 (241)
T 1xs5_A 21 AKEEVKKQH--IELRIVEF--TNYVALNEAVMRGDILMNF 56 (241)
T ss_dssp HHHHHHTTT--EEEEEEEC--SCHHHHHHHHHHTSSSEEE
T ss_pred HHHHHHHcC--CeEEEEEc--CChHHHHHHHHcCCCCEec
Confidence 344555668 56888888 6899999999999999964
No 135
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=85.37 E-value=5 Score=40.82 Aligned_cols=101 Identities=9% Similarity=-0.088 Sum_probs=59.6
Q ss_pred CCCCCHHHHHhCCCeEEEecChhHHHHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHH-HhhcCCceE
Q 005717 410 PSFTDVKDIQKNGYFVGYQTNSFVKDLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIF-LASYCSRYM 488 (681)
Q Consensus 410 ~~i~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~-~~~~c~~l~ 488 (681)
.+|++++||. |++|.+..+......+ +.++... ..-...|...+|.+|.+|+.....+.+.-. ..+-++.+.
T Consensus 148 ~pI~s~~DLk--G~KiRv~~~~~~~~~~-~alGa~p----v~m~~~Evy~ALq~G~VDg~~~p~~~~~~~~~~ev~ky~~ 220 (327)
T 2hpg_A 148 KPIRKPEDLN--GLRIRTPGAPAWQESI-RSLGAIP----VAVNFGEIYTAVQTRAVDGAELTYANVYNGGLYEVLKYMS 220 (327)
T ss_dssp SCCSSGGGGT--TCEEECCSSHHHHHHH-HHHTSEE----ECCCGGGHHHHHHTTSCSEEEECHHHHHHTTGGGTCCEEE
T ss_pred CCCCCHHHHC--CCEEEeCCCHHHHHHH-HHcCCEe----eecCHHHHHHHHHcCCeeEEECCHHHHHHcChhhhccEEE
Confidence 5899999999 9999887554555666 6666532 123567899999999999998765443211 111243333
Q ss_pred EECcccccCCcEEEecCCCC--ChHHHHHHHHh
Q 005717 489 MVGPTYRTDGFGFAFPLGSP--LVPYISRAILK 519 (681)
Q Consensus 489 ~v~~~~~~~~~~~~~~k~sp--l~~~in~~Il~ 519 (681)
..+ .. .....+++.+..- |-+....+|..
T Consensus 221 ~~~-~~-~~~~~~~~n~~~~~~L~~e~q~~i~~ 251 (327)
T 2hpg_A 221 ETG-HF-LLINFEIVSADWFNSLPKEYQKIIEE 251 (327)
T ss_dssp EEE-EE-EEEEEEEEEHHHHHHSCHHHHHHHHH
T ss_pred ecC-cc-hhceEEEEeHHHHhcCCHHHHHHHHH
Confidence 332 22 2345566666521 44444444443
No 136
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=84.84 E-value=13 Score=36.98 Aligned_cols=205 Identities=9% Similarity=0.073 Sum_probs=119.7
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++||||+... +. ..+...++..+.+..+ .+++++... +.+.++..|.+|++|+++....
T Consensus 93 g~l~I~~~~~--~~---------------~~~l~~~l~~f~~~~P-~v~i~l~~~---~~~~~~~~l~~g~~Dlai~~~~ 151 (324)
T 1al3_A 93 GSLYVATTHT--QA---------------RYALPGVIKGFIERYP-RVSLHMHQG---SPTQIAEAVSKGNADFAIATEA 151 (324)
T ss_dssp EEEEEEECHH--HH---------------HHTSHHHHHHHHHHCT-EEEEEEEEC---CHHHHHHHHHTTCCSEEEESSC
T ss_pred CeEEEEechh--hh---------------hhHHHHHHHHHHHHCC-CCEEEEEEC---CHHHHHHHHHCCCceEEEEecC
Confidence 6799998642 11 1345678888888876 356666664 7789999999999999986321
Q ss_pred EeeccccccccccceeecceEEEEEeccCCCcCceeeeccCcHhHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCchh
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVKDDERKNFWIFLKPLSWDLWLTTGAAFIFTGLVVWVLEHRINTEFRGPPQHQIG 354 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~~~~~~~~~~fl~PF~~~vW~~i~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~ 354 (681)
. .....+. ..|+....+++++++.....
T Consensus 152 ~--~~~~~l~-~~~L~~~~~~~v~~~~~pl~------------------------------------------------- 179 (324)
T 1al3_A 152 L--HLYDDLV-MLPCYHWNRSIVVTPEHPLA------------------------------------------------- 179 (324)
T ss_dssp C--CTTSCEE-EEEEEEECEEEEECTTSTTT-------------------------------------------------
T ss_pred C--CCCCCee-EEEecCCceEEEEcCCCccc-------------------------------------------------
Confidence 1 1111222 35677777888876543211
Q ss_pred hHHHHHHHHHhccCcccccccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccCCCCCCHHHHHhCCCe-EEEecChh-
Q 005717 355 TIFWFSFSTLVFAHRERVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQPSFTDVKDIQKNGYF-VGYQTNSF- 432 (681)
Q Consensus 355 ~~~~~~~~~l~~~~~~~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~~~i~s~~dL~~~~~~-vg~~~~s~- 432 (681)
....-+++||. +.+ +....++.
T Consensus 180 ------------------------------------------------------~~~~~~~~dL~--~~~~i~~~~~~~~ 203 (324)
T 1al3_A 180 ------------------------------------------------------TKGSVSIEELA--QYPLVTYTFGFTG 203 (324)
T ss_dssp ------------------------------------------------------TTSCCCHHHHH--TSEEEEECTTSTT
T ss_pred ------------------------------------------------------cCCCCCHHHHh--CCCeEEecCCCcH
Confidence 01234688998 443 44444332
Q ss_pred ---HHHHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcCCceEEEC--cccccCCcEEEecCCC
Q 005717 433 ---VKDLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSRYMMVG--PTYRTDGFGFAFPLGS 507 (681)
Q Consensus 433 ---~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~l~~v~--~~~~~~~~~~~~~k~s 507 (681)
...++ ...++........++.+...+++..|.--+++.... ..... . .++..+. .......++++.+++.
T Consensus 204 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~lv~~G~Giailp~~~-~~~~~--~-~~L~~~~~~~~~~~~~~~l~~~~~~ 278 (324)
T 1al3_A 204 RSELDTAF-NRAGLTPRIVFTATDADVIKTYVRLGLGVGVIASMA-VDPVS--D-PDLVKLDANGIFSHSTTKIGFRRST 278 (324)
T ss_dssp HHHHHHHH-HHHTCCCEEEEEESSHHHHHHHHHHTSCEEEEEGGG-CCTTT--C-TTSEEEECBTTBCCEEEEEEEETTC
T ss_pred HHHHHHHH-HHcCCCCceEEEeCCHHHHHHHHHhCCCeEEechhh-hhhhc--c-CCeEEEECCCCCcceEEEEEEeCCC
Confidence 23344 333444333445678888888887775555555432 11111 1 2455542 2223456788889988
Q ss_pred CChHHHHHHHHhhccCccHHHHHHHHHc
Q 005717 508 PLVPYISRAILKVTEDKEKMENIEKALG 535 (681)
Q Consensus 508 pl~~~in~~Il~l~e~~G~l~~i~~kw~ 535 (681)
++...+...+..+.+. .-+.+.++++
T Consensus 279 ~~~~~~~~fi~~l~~~--~~~~~~~~~~ 304 (324)
T 1al3_A 279 FLRSYMYDFIQRFAPH--LTRDVVDTAV 304 (324)
T ss_dssp CCCHHHHHHHHHHCTT--CCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--hccchhhhhh
Confidence 8777777777776665 2334444443
No 137
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=80.93 E-value=14 Score=35.82 Aligned_cols=83 Identities=8% Similarity=0.000 Sum_probs=57.2
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
+++|||+..... ..+..+++..+.++.+ .+++++... +...++.+|.+|++|+++....
T Consensus 91 g~l~Ig~~~~~~-----------------~~~l~~~l~~f~~~~P-~i~l~~~~~---~~~~~~~~l~~g~~Dl~i~~~~ 149 (294)
T 1ixc_A 91 GELSVAYFGTPI-----------------YRSLPLLLRAFLTSTP-TATVSLTHM---TKDEQVEGLLAGTIHVGFSRFF 149 (294)
T ss_dssp EEEEEEECSGGG-----------------GTHHHHHHHHHHHHCT-TEEEEEEEC---CHHHHHHHHHHTSCSEEEESCC
T ss_pred ceEEEEEccchh-----------------HHHHHHHHHHHHHHCC-CcEEEEEeC---CHHHHHHHHHCCCccEEEEecC
Confidence 579999865211 1455688888888876 366777664 6788999999999999986432
Q ss_pred EeeccccccccccceeecceEEEEEecc
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVKD 302 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~~ 302 (681)
. ....+. ..|.....+++++++..
T Consensus 150 ~---~~~~l~-~~~l~~~~~~~v~~~~~ 173 (294)
T 1ixc_A 150 P---RHPGIE-IVNIAQEDLYLAVHRSQ 173 (294)
T ss_dssp C---CCTTEE-EEEEEEEEEEEEEEGGG
T ss_pred C---CCCCce-EEEEeeccEEEEEeCCC
Confidence 1 122222 35778888888888654
No 138
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=80.81 E-value=8 Score=38.99 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=44.3
Q ss_pred CCCCCHHHHHhCCCeEEEecChhHHHHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhh
Q 005717 410 PSFTDVKDIQKNGYFVGYQTNSFVKDLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPY 475 (681)
Q Consensus 410 ~~i~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~ 475 (681)
.+|++++||. |.+|.+..+......+ +.++.... .-...|...+|.+|.+|+.....+.
T Consensus 130 ~pI~s~~Dlk--G~KiR~~~~~~~~~~~-~~lGa~pv----~m~~~Evy~ALq~G~VDg~~~~~~~ 188 (316)
T 2vpn_A 130 EPITSPEDFD--NKKIRTMTNPLLAETY-KAFGATPT----PLPWGEVYGGLQTGIIDGQENPIFW 188 (316)
T ss_dssp SCCCSGGGGT--TCEEEECSCHHHHHHH-HHHTCEEE----ECCGGGHHHHHHHTSCSEEEEEHHH
T ss_pred CCCCChHHhC--CCEEEeCCCHHHHHHH-HHcCCeee----ecCHHHHHHHHHcCCcceeeCCHHH
Confidence 4899999999 9999987666666666 66665332 2256789999999999998865443
No 139
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=79.32 E-value=12 Score=34.38 Aligned_cols=107 Identities=10% Similarity=-0.017 Sum_probs=60.5
Q ss_pred CCHHHHHhCCCeEEEecChhHHHHHhhhcCCcc----ccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcCCceE
Q 005717 413 TDVKDIQKNGYFVGYQTNSFVKDLLTKKLNFNE----TRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSRYM 488 (681)
Q Consensus 413 ~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~l~ 488 (681)
-+++||.+.. .+....+.....++ ....... ......++.+...+++..|.--+++.+.....+...... ..
T Consensus 96 ~~~~~L~~~~-~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~Gi~~lp~~~~~~~~~~~~l--~~ 171 (219)
T 3kos_A 96 QTPADILKFP-LLRSYRRDEWALWM-QTVGEAPPSPTHNVMVFDSSVTMLEAAQAGMGVAIAPVRMFTHLLSSERI--VQ 171 (219)
T ss_dssp SSGGGGGGSC-EEEESCTTHHHHHH-HHTTCCCCCTTSCEEEESCHHHHHHHHHTTSCBEEEEGGGCHHHHHTTSS--BC
T ss_pred CCHHHHhcCc-eeccCCccCHHHHH-HHcCCCCCccccceeEEccHHHHHHHHHcCCCeEeehHHhhHHHHHcCCe--ec
Confidence 4678887433 34555566666666 3322221 223456788888999988866666666544433322222 11
Q ss_pred EECcccccCCcEEEecCCCCChHHHHHHHHhhccC
Q 005717 489 MVGPTYRTDGFGFAFPLGSPLVPYISRAILKVTED 523 (681)
Q Consensus 489 ~v~~~~~~~~~~~~~~k~spl~~~in~~Il~l~e~ 523 (681)
...+......++++.+++.+....+...+..+.+.
T Consensus 172 ~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~l~~~ 206 (219)
T 3kos_A 172 PFLTQIDLGSYWITRLQSRPETPAMREFSRWLTGV 206 (219)
T ss_dssp CCCCCBCSCEEEEEEETTSCCCHHHHHHHHHHHHH
T ss_pred cccCCccCCcEEEEecccccCCHHHHHHHHHHHHh
Confidence 22223334567888999887766666655555443
No 140
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=78.89 E-value=30 Score=33.23 Aligned_cols=71 Identities=10% Similarity=0.018 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEEEeeccc-cccccccceeecceEEEEEecc
Q 005717 227 CYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTTIVANRS-TFVDFTLPYSESGVSMLVLVKD 302 (681)
Q Consensus 227 ~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~it~~R~-~~vdFT~P~~~~~~~~vv~~~~ 302 (681)
-.+++..+.++.+ .+++++... +..+++.+|.+|++|+++........+. ..+. ..|+....+++++++..
T Consensus 42 l~~~l~~f~~~~P-~i~v~i~~~---~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~~~~~~v~~~~~ 113 (290)
T 1twy_A 42 MDVLAEKYNQQHP-ETYVAVQGV---GSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAFDGLAIVVNQAN 113 (290)
T ss_dssp HHHHHHHHHHHCT-TCEEEEEES---CHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEEEEEEEEECTTC
T ss_pred HHHHHHHHHhhCC-CceEEEEec---CcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEeeeEEEEECCCC
Confidence 4467788888774 256777664 7889999999999999886432211100 1222 36778888888887543
No 141
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=78.48 E-value=24 Score=34.81 Aligned_cols=70 Identities=13% Similarity=0.156 Sum_probs=49.2
Q ss_pred eehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEEEeeccccccccccceeecceEEEEEecc
Q 005717 225 GFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSMLVLVKD 302 (681)
Q Consensus 225 G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~it~~R~~~vdFT~P~~~~~~~~vv~~~~ 302 (681)
.+..+++..+.+..+ .+++++... +...++.+|.+|++|+++..... ....+. ..|+....+++++++..
T Consensus 103 ~~l~~~l~~f~~~~P-~v~i~l~~~---~~~~~~~~l~~g~~Dlai~~~~~---~~~~l~-~~~L~~~~~~~v~~~~h 172 (312)
T 2h9b_A 103 GLLPRIIHLYRQAHP-NLRIELYEM---GTKAQTEALKEGRIDAGFGRLKI---SDPAIK-HSLLRNERLMVAVHASH 172 (312)
T ss_dssp TTHHHHHHHHHHTCT-TCEEEEEEC---CHHHHHHHHHTTSCSEEEESSCC---CCTTEE-EEEEEEEEEEEEEETTS
T ss_pred hhHHHHHHHHHHHCC-CcEEEEEeC---CHHHHHHHHHcCCCCEEEEeCCC---CCCCce-EEEeecceEEEEEcCCC
Confidence 456688888888876 366777764 78899999999999999864221 111221 35777888888887643
No 142
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=76.07 E-value=6.2 Score=36.08 Aligned_cols=79 Identities=6% Similarity=0.014 Sum_probs=50.1
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++||||+..... ..+-.+++..+.++.+- +++++... +. +.+|.+|++|+++....
T Consensus 7 g~l~Ig~~~~~~-----------------~~~l~~~l~~f~~~~P~-v~l~i~~~-----~~-~~~l~~g~~D~~i~~~~ 62 (213)
T 3hhf_B 7 GVLSVDSAMPMV-----------------LHLLAPLAAKFNERYPH-IRLSLVSS-----EG-YINLIERKVDIALRAGE 62 (213)
T ss_dssp EEEEEEECHHHH-----------------HHTHHHHHHHHHHHCTT-EEEEEECC-----ST-THHHHTTSSSEEEECC-
T ss_pred ceEEEecCHHHH-----------------HHHHHHHHHHHHHHCCC-cEEEEEeC-----Cc-HHHHHhCCccEEEEEec
Confidence 578888765211 13567888899888762 55666632 12 34589999999986432
Q ss_pred EeeccccccccccceeecceEEEEEec
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVK 301 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~ 301 (681)
.. ...+. +.++.+..+++++++.
T Consensus 63 ~~---~~~~~-~~~l~~~~~~~v~~~~ 85 (213)
T 3hhf_B 63 LD---DSGLR-ARHLFDSRFRVIASPE 85 (213)
T ss_dssp -C---CSSEE-EEEEEEECEEEEECHH
T ss_pred CC---Cccce-EEeeecceEEEEeCHH
Confidence 22 12222 4678888888888754
No 143
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=75.80 E-value=8.2 Score=38.42 Aligned_cols=101 Identities=13% Similarity=0.052 Sum_probs=60.3
Q ss_pred CCCHHHHHhCCCeEEEecChhHHHHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcCCceEEEC
Q 005717 412 FTDVKDIQKNGYFVGYQTNSFVKDLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSRYMMVG 491 (681)
Q Consensus 412 i~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~l~~v~ 491 (681)
+++++||. +.+|++.--...++|| ++.+.+-.-+..+.+.|-+. ..|-.|++++-...-.-+.++ +|.+++
T Consensus 121 ~~~~~~l~--~~RIATkYp~l~r~yf-~~~gi~~~Ii~l~GsvE~aP---~~GlADaIvDiVsTG~TLraN---gL~~i~ 191 (304)
T 1nh8_A 121 NWTTADLA--GMRIATAYPNLVRKDL-ATKGIEATVIRLDGAVEISV---QLGVADAIADVVGSGRTLSQH---DLVAFG 191 (304)
T ss_dssp CCCGGGGT--TCEEEESCHHHHHHHH-HHHTCCCEEEECSSCCTHHH---HTTSCSEEEEEESSSHHHHHT---TEEEEE
T ss_pred cCChHHhC--CCEEEeCcHHHHHHHH-HHCCCeEEEEECCCceeecc---CCCcccEEEEEeCChHHHHHC---cCEEcc
Confidence 56788886 7899998888889999 55566543444555666553 345567777644333333332 677884
Q ss_pred cccccCCcEEEecCCCC-C--hHHHHHHHHhhc
Q 005717 492 PTYRTDGFGFAFPLGSP-L--VPYISRAILKVT 521 (681)
Q Consensus 492 ~~~~~~~~~~~~~k~sp-l--~~~in~~Il~l~ 521 (681)
+.+....-.++..+.+. . .+.++..+.+|.
T Consensus 192 e~I~~SsA~LI~n~~s~~~~k~~~i~~l~~rl~ 224 (304)
T 1nh8_A 192 EPLCDSEAVLIERAGTDGQDQTEARDQLVARVQ 224 (304)
T ss_dssp EEEEEECEEEEEEC--------CHHHHHHHHHH
T ss_pred cEEEEEEEEEEEccccchhhhHHHHHHHHHHHH
Confidence 44444455666777762 2 235666666665
No 144
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=75.21 E-value=36 Score=33.56 Aligned_cols=69 Identities=9% Similarity=0.187 Sum_probs=48.9
Q ss_pred eehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEEEeeccccccccccceeecceEEEEEec
Q 005717 225 GFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSMLVLVK 301 (681)
Q Consensus 225 G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~it~~R~~~vdFT~P~~~~~~~~vv~~~ 301 (681)
.+...++..+.+..+ .+++++... +...++.+|.+|++|+++..... ....+. ..|+....+++++++.
T Consensus 103 ~~l~~~l~~f~~~~P-~v~l~l~~~---~~~~~~~~l~~g~~Dlai~~~~~---~~~~l~-~~~L~~~~~~~v~~~~ 171 (313)
T 2h98_A 103 GLLPEIIYLFRQQNP-EIHIELIEC---GTKDQINALKQGKIDLGFGRLKI---TDPAIR-RIMLHKEQLKLAIHKH 171 (313)
T ss_dssp TTHHHHHHHHHHHCT-TSEEEEEEC---CHHHHHHHHHHTSCSEEEESSCC---CCTTEE-EEEEEEEEEEEEEETT
T ss_pred hHHHHHHHHHHHHCC-CeEEEEEeC---ChHHHHHHHHcCCCCEEEEeCCC---CCCCee-EEEeeeCcEEEEEcCC
Confidence 456788888988876 366777764 78899999999999999863221 111222 3577788888888754
No 145
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=74.72 E-value=32 Score=33.93 Aligned_cols=75 Identities=7% Similarity=0.037 Sum_probs=48.6
Q ss_pred eehHHHHHHHHHH---cC-CCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEEEeeccc--ccccc-cc-ceeecceEE
Q 005717 225 GFCYDMFHAVLQV---LE-FPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTTIVANRS--TFVDF-TL-PYSESGVSM 296 (681)
Q Consensus 225 G~~idll~~l~~~---l~-f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~it~~R~--~~vdF-T~-P~~~~~~~~ 296 (681)
.+.-+++..+.++ .+ -.+++++... +...++.+|.+|++|+++..-....+.. ..+.+ .. |+....+++
T Consensus 33 ~~lp~ll~~F~~~~~~~~~P~v~v~l~~~---~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~~~l~~d~lvl 109 (294)
T 3cvg_A 33 GLVKELADAFIKSKVDSGSAPFKVAWYKS---DTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYYAFRDHFML 109 (294)
T ss_dssp THHHHHHHHHHHHHHSCC---CEEEEEEC---CHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhhcccCCCCeEEEEEeC---CHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccceeeeEEeccEEE
Confidence 4566788888888 71 1256777764 7889999999999999875321111100 11122 24 888889999
Q ss_pred EEEecc
Q 005717 297 LVLVKD 302 (681)
Q Consensus 297 vv~~~~ 302 (681)
++++..
T Consensus 110 v~~~~h 115 (294)
T 3cvg_A 110 IGPPSN 115 (294)
T ss_dssp EECTTC
T ss_pred EecCCC
Confidence 887654
No 146
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=73.65 E-value=56 Score=32.42 Aligned_cols=82 Identities=20% Similarity=0.075 Sum_probs=52.9
Q ss_pred ccCChhHHHHHHccCcceEEecchhhHHHHHhhcCCceEEECcc--cccCCcEEEecCCCCChHHHHHHHHhhccCccHH
Q 005717 450 NYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSRYMMVGPT--YRTDGFGFAFPLGSPLVPYISRAILKVTEDKEKM 527 (681)
Q Consensus 450 ~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~l~~v~~~--~~~~~~~~~~~k~spl~~~in~~Il~l~e~~G~l 527 (681)
.+.+..+..+.+.+|++++.+.....+..+....- ++..+-+. -.....+++++++++-.+.--+.|.-+... ...
T Consensus 215 ~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~-~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~s~-e~q 292 (351)
T 4edp_A 215 TYSKSSDLANMFSNGEIVAAVASDFAFGTISKAKP-EVINVIPESGTYLNFNTININKNSKNKDLAYEFINYALSK-EVQ 292 (351)
T ss_dssp EECCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCT-TCEEECCTTCCBEEEEEEEEBTTCSCHHHHHHHHHHHTSH-HHH
T ss_pred ccCChHHHHHHHHcCCEEEEecCcHHHHHHHhcCC-CeeeeCCCCCcccceeeEEEECCCCCHHHHHHHHHHhcCH-HHH
Confidence 34566788889999999988877665555555443 34443221 122345789999999888777777777765 334
Q ss_pred HHHHHH
Q 005717 528 ENIEKA 533 (681)
Q Consensus 528 ~~i~~k 533 (681)
..+.+.
T Consensus 293 ~~~~~~ 298 (351)
T 4edp_A 293 EKTAKA 298 (351)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444443
No 147
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=73.43 E-value=8.7 Score=38.61 Aligned_cols=41 Identities=5% Similarity=0.002 Sum_probs=29.0
Q ss_pred HHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEe
Q 005717 228 YDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGD 272 (681)
Q Consensus 228 idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~ 272 (681)
..+++.+.+.+|+++++ ++. .+..-+...|.+|++|+....
T Consensus 24 ~~i~~~~Le~~Gy~Ve~--~~~--~~~~~~~~Al~~G~iDi~~e~ 64 (309)
T 1r9l_A 24 TLLVSRALEKLGYTVNK--PSE--VDYNVGYTSLASGDATFTAVN 64 (309)
T ss_dssp HHHHHHHHHHTTCEECC--CEE--CCHHHHHHHHHHTSSCEEEEE
T ss_pred HHHHHHHHHHcCCCeEE--eec--CchHHHHHHHhcCCceEEecc
Confidence 35667777788966443 332 355778889999999998653
No 148
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=72.14 E-value=8 Score=38.80 Aligned_cols=54 Identities=15% Similarity=0.203 Sum_probs=42.7
Q ss_pred chhhHHHHHHHHHhccC-cc-cccccchh------HHHHHHHHHHHHHHhHhhhhhhheeee
Q 005717 352 QIGTIFWFSFSTLVFAH-RE-RVVNNLSR------FVLIIWVFVVLILTQSYTASLTSMLTV 405 (681)
Q Consensus 352 ~~~~~~~~~~~~l~~~~-~~-~~~s~~~R------~l~~~w~~~~lil~s~YtA~L~s~LT~ 405 (681)
++.+++|+++-++..-| ++ .|.+..+| ++.++|+++++.+.++-.+.+...+..
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~ 285 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRV 285 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999998766 43 36666665 699999999999988888877776643
No 149
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=71.45 E-value=4.4 Score=41.89 Aligned_cols=121 Identities=16% Similarity=0.170 Sum_probs=69.3
Q ss_pred CCCCCCHHHHHhCCCeEEEec-------Chh-----------------------HHHHHhhhcCCccc--cccccCChh-
Q 005717 409 QPSFTDVKDIQKNGYFVGYQT-------NSF-----------------------VKDLLTKKLNFNET--RLKNYTTSE- 455 (681)
Q Consensus 409 ~~~i~s~~dL~~~~~~vg~~~-------~s~-----------------------~~~~l~~~~~~~~~--~~~~~~~~~- 455 (681)
..+|++++||. |++||+.. |+. ...+| ++.+.... +++.+...+
T Consensus 108 ds~I~s~~DLk--Gk~Igv~~~~~~~~~gs~~~~~~~~~~~~~~~~~gs~~~~~~~~~L-~~~Gl~~~dv~~v~~~~~~~ 184 (365)
T 2de3_A 108 DSPITAAADLA--GRRIGVSASAIRILRGQLGDYLELDPWRQTLVALGSWEARALLHTL-EHGELGVDDVELVPISSPGV 184 (365)
T ss_dssp TCSCCSGGGGT--TCEEEECHHHHHHHHTCCTTGGGSCHHHHHHHHTTHHHHHHHHHHH-HHTTCCGGGSEEEECCCTTT
T ss_pred CCCCCCHHHhC--CCeEEeecccccccCCCcccccccchhhhhhhccchhhHHHHHHHH-HHcCCCHHHeEEEECCCccc
Confidence 45799999998 99999976 431 34455 44555433 333444321
Q ss_pred ------------------------HHHHHHccCcceEEecchhhHHHHHhhcCCceEEECccc----ccCCcEEEecC--
Q 005717 456 ------------------------DYHDALSNGEVAAIFDEIPYIKIFLASYCSRYMMVGPTY----RTDGFGFAFPL-- 505 (681)
Q Consensus 456 ------------------------~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~l~~v~~~~----~~~~~~~~~~k-- 505 (681)
+...+|.+|++||++...++...... . ...++.+.- ......+++++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~G~vDA~~~~~p~~~~~~~--~-g~~~l~~~~~~~~~~~~~~l~~~~~~ 261 (365)
T 2de3_A 185 DVPAEQLEESATVKGADLFPDVARGQAAVLASGDVDALYSWLPWAGELQA--T-GARPVVDLGLDERNAYASVWTVSSGL 261 (365)
T ss_dssp CCCHHHHHHSSBSSHHHHSTTHHHHHHHHHHSSSCSEEEEEHHHHHHHHH--T-TEEESSCGGGSGGGCEEEEEEEEHHH
T ss_pred cccccccccccccccccccccchhhHHHHHhCCCcCEEEEcchhHHHHHh--C-CCEEEEeCcccCCCCceEEEEEcHHH
Confidence 25788999999999988776655433 2 344443321 11123556653
Q ss_pred --CCC-ChHH----HHHHHHhhccCccHHHHHHHHHc
Q 005717 506 --GSP-LVPY----ISRAILKVTEDKEKMENIEKALG 535 (681)
Q Consensus 506 --~sp-l~~~----in~~Il~l~e~~G~l~~i~~kw~ 535 (681)
..| +... +.++...+.++.....++..+++
T Consensus 262 ~~~~p~~v~~~~~a~~~a~~~~~~~p~~~~~i~~~~~ 298 (365)
T 2de3_A 262 VRQRPGLVQRLVDAAVDAGLWARDHSDAVTSLHAANL 298 (365)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHh
Confidence 344 4433 55555566555124455555655
No 150
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=71.28 E-value=15 Score=36.15 Aligned_cols=41 Identities=10% Similarity=0.256 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEe
Q 005717 227 CYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGD 272 (681)
Q Consensus 227 ~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~ 272 (681)
...+...+.+.+|++ ++..+. +-.-+...|.+|++|+....
T Consensus 31 ~~~i~~~~Le~~G~~--Ve~~~~---~~~~~~~AL~~G~iD~~~e~ 71 (280)
T 3tmg_A 31 ATNVLKVVFEKMGYN--AEIFSV---TTSIMYQYLASGKIDGTVSS 71 (280)
T ss_dssp HHHHHHHHHHHTTEE--EEEEEC---CHHHHHHHHHTTSSSEEEEE
T ss_pred HHHHHHHHHHHCCCc--eEEEEC---CcHHHHHHHHCCCCcEEEec
Confidence 346677777788955 555554 45678899999999998764
No 151
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=71.10 E-value=12 Score=37.35 Aligned_cols=39 Identities=13% Similarity=0.296 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEe
Q 005717 229 DMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGD 272 (681)
Q Consensus 229 dll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~ 272 (681)
.+...+.+.+|++ +++.+. +-..+...|.+|++|+.+..
T Consensus 24 ~i~~~~Le~~G~~--Ve~~~~---~~~~~~~Al~~G~iD~~~~~ 62 (298)
T 2rin_A 24 ATATTILEALGYE--TDVKVL---SVPVTYTSLKNKDIDVFLGN 62 (298)
T ss_dssp HHHHHHHHHHTCE--EEEECC---CHHHHHHHHHHTSCCEEEEE
T ss_pred HHHHHHHHHcCCc--eEEEEC---CcHHHHHHHHcCCcEEEhhh
Confidence 4566666778965 566553 55778899999999998754
No 152
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=70.92 E-value=4.8 Score=40.40 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=47.1
Q ss_pred CchhhHHHHHHHHHhccC-cc-cccccchhHHHHHHHHHHHHHHhHhhhhhhheee
Q 005717 351 HQIGTIFWFSFSTLVFAH-RE-RVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLT 404 (681)
Q Consensus 351 ~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT 404 (681)
.++.+++||++.++..-| +. .|.+..+|++.+++.++++.+.....++++..+.
T Consensus 114 w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~ 169 (309)
T 3um7_A 114 WDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLG 169 (309)
T ss_dssp CSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999998766 44 5899999999999999999999999999988763
No 153
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=68.94 E-value=84 Score=32.01 Aligned_cols=88 Identities=11% Similarity=0.066 Sum_probs=51.4
Q ss_pred ccccccCChhHHHHHHccCcceEEecchhhHHHHH-----------------hhcCCceEEECcc-----cccCCcEEEe
Q 005717 446 TRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFL-----------------ASYCSRYMMVGPT-----YRTDGFGFAF 503 (681)
Q Consensus 446 ~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~-----------------~~~c~~l~~v~~~-----~~~~~~~~~~ 503 (681)
.++..-.+..+....+..|++|+.+.....+...- ..+-++..++... .....|.+++
T Consensus 221 ~k~v~~~~v~~~l~~v~~G~aDag~vy~S~a~~~~l~~v~lP~~~n~~~~~~~~~y~~v~v~~~~~~~~~~~Pi~y~~ai 300 (354)
T 3k6v_A 221 SKIMLRSMEVELSSALETGEIDYLYIYRSVAEQHGFEYVALPPAIDLSSLEYADNYSKVQVEMVNGEVVTGSPIVYGVTI 300 (354)
T ss_dssp TTEEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHTCEEEECCTTTSSCCGGGHHHHTTEEEECTTSCEEECCCCEEEEEC
T ss_pred ceeEeCCCHHHHHHHHHcCCCCEEEEEhhhhhhcCCcEEeCChhhccccccccccccceeeeccccccccCCceeEeEEe
Confidence 34555577889999999999998776554433210 0000233343211 1234588999
Q ss_pred cCCCCChHHHHHHHHhhccCccHHHHHHHHHc
Q 005717 504 PLGSPLVPYISRAILKVTEDKEKMENIEKALG 535 (681)
Q Consensus 504 ~k~spl~~~in~~Il~l~e~~G~l~~i~~kw~ 535 (681)
.|+++=.+.-.+.+.-|... .-+++..++-
T Consensus 301 ~k~a~~~~~A~~Fi~fL~S~--eaq~i~~~~G 330 (354)
T 3k6v_A 301 PNNAENSELATEFVALLLGE--TGQQIFIENG 330 (354)
T ss_dssp CTTCTTHHHHHHHHHHHHSH--HHHHHHHHTT
T ss_pred ecCCCCHHHHHHHHHHHcCH--HHHHHHHHCC
Confidence 99998665555555555544 4555666553
No 154
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=68.78 E-value=17 Score=35.39 Aligned_cols=42 Identities=7% Similarity=0.097 Sum_probs=31.8
Q ss_pred ehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEe
Q 005717 226 FCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGD 272 (681)
Q Consensus 226 ~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~ 272 (681)
+...+.+.+.+.+|++ ++..+. +-.-+...|.+|++|+....
T Consensus 16 i~~~i~~~~Le~~G~~--Ve~~~~---~~~~~~~al~~G~iD~~~e~ 57 (256)
T 3l6g_A 16 ASINVLTQAMKEHGFD--VKTTAL---DNAVAWQTVANGQADGMVSA 57 (256)
T ss_dssp HHHHHHHHHHHHTTEE--EEEEEC---CHHHHHHHHHTTSSSEEEEE
T ss_pred HHHHHHHHHHHHCCCc--eEEEEC---ChHHHHHHHHCCCCeEEEcc
Confidence 4457778888888855 566654 55678999999999998764
No 155
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=68.12 E-value=3.9 Score=42.82 Aligned_cols=68 Identities=15% Similarity=0.140 Sum_probs=51.7
Q ss_pred CCCCCCHHHHHhCCCeEEEecChhHHHHHh------hhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHh
Q 005717 409 QPSFTDVKDIQKNGYFVGYQTNSFVKDLLT------KKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLA 481 (681)
Q Consensus 409 ~~~i~s~~dL~~~~~~vg~~~~s~~~~~l~------~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~ 481 (681)
...|++++||. + ||++.+.....+.. ++.+. +.+++.|++..++..+|.+|++||++.+..+...+..
T Consensus 25 ds~i~sl~DLk--g--vgv~~~~~~~~~~~~~~~i~~~~g~-~~~~~~y~~~~~a~~aL~nG~vDAiv~~~~~~~~le~ 98 (398)
T 2xxp_A 25 DSEIENVTQLT--S--VTAPTGTDNENIQKLLADIKSSQNT-DLTVNQSSSYLAAYKSLIAGETKAIVLNSVFENIIEL 98 (398)
T ss_dssp TCSCCSGGGCS--E--EEECTTTSHHHHHHHHHHHHHHSCC-CCEEEECSSHHHHHHHHHTTSCSCEEEEHHHHHHHHH
T ss_pred CCCcCCHHHhc--C--eeeECCCCHHHHHHHHHHHHHhhCC-cceEEecCCHHHHHHHHHcCCCCEEEEchHHHHHHHh
Confidence 36899999998 5 99998876665541 11121 1357899999999999999999999998887766554
No 156
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=66.78 E-value=14 Score=37.53 Aligned_cols=60 Identities=13% Similarity=0.105 Sum_probs=49.7
Q ss_pred CCchhhHHHHHHHHHhccC-ccc-cc--ccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccC
Q 005717 350 QHQIGTIFWFSFSTLVFAH-RER-VV--NNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQ 409 (681)
Q Consensus 350 ~~~~~~~~~~~~~~l~~~~-~~~-~~--s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~ 409 (681)
..++..++||++.++..-| +.. |. ...+|+++.+-.+.++++.+.-++-+.+-++.++-.
T Consensus 89 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 89 LNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp CCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred ccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 3578999999999998766 443 54 577999999999999999999999999888776644
No 157
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=63.06 E-value=10 Score=36.95 Aligned_cols=59 Identities=12% Similarity=0.005 Sum_probs=37.4
Q ss_pred HHHHHhCCCeEEEecChhHHHHHhhhcCCccccccccCChhHHHHHHccCcceEEecc-hhhHH
Q 005717 415 VKDIQKNGYFVGYQTNSFVKDLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDE-IPYIK 477 (681)
Q Consensus 415 ~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e-~~~~~ 477 (681)
++||. |++||+..++....++.+.. ....++. +-...+...++.+|++||.+.- .+.+.
T Consensus 91 ~~dLk--Gk~Ia~~~~~~~~~~ll~~l-l~~~~~~-~~~~~~~~~al~~G~vDa~~~~~ep~~~ 150 (272)
T 2czl_A 91 LQALE--GLRVAVPGRHTTAYFLLSLY-AQGFVPV-EVRYDRILPMVAQGEVEAGLIIHESRFT 150 (272)
T ss_dssp CSCCT--TCEEEESCTTSHHHHHHHHH-CSSCEEE-ECCGGGHHHHHHTTSSSEEEECTTHHHH
T ss_pred hHHhC--CCEEEeCCCCchHHHHHHHH-hccCcee-ecChHHHHHHHHCCCCCEEEEecchhhh
Confidence 67887 89999986555444431221 1112332 3345688899999999998874 55555
No 158
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=61.46 E-value=53 Score=32.51 Aligned_cols=36 Identities=8% Similarity=0.177 Sum_probs=28.0
Q ss_pred HHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEE
Q 005717 231 FHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAV 270 (681)
Q Consensus 231 l~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~ 270 (681)
++...++.|+ +++++.+ .++.....+|.+|++|+..
T Consensus 56 ~~~~~~~~G~--~Ve~~~f--~~~~~~~~AL~~G~iD~~~ 91 (295)
T 1p99_A 56 VKELAKKDDI--DVEIKHF--SDYNLPNKALNDGDIDMNA 91 (295)
T ss_dssp HHHHHGGGTC--CEEEEEC--SSTTSHHHHHHTTSSSEEE
T ss_pred HHHHHHHcCC--eEEEEEe--CChHHHHHHHHcCCCCEEc
Confidence 4445556684 5788888 5688899999999999975
No 159
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=60.70 E-value=98 Score=29.49 Aligned_cols=74 Identities=7% Similarity=0.018 Sum_probs=48.3
Q ss_pred eehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEEEeeccc---cccccccceeecceEEEEEec
Q 005717 225 GFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTTIVANRS---TFVDFTLPYSESGVSMLVLVK 301 (681)
Q Consensus 225 G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~it~~R~---~~vdFT~P~~~~~~~~vv~~~ 301 (681)
|+.-+|+..+.++.|.+ +.+.-. .-..++.++.+|.+|+++..-....+.. ....-..|++...+++++|+.
T Consensus 19 ~ll~~L~~~Fek~~gv~--V~~~~~---gSg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N~lVlV~P~~ 93 (237)
T 3muq_A 19 GLLDYLLPQFEKDTGYK--VDVIAA---GTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDFVIVGPKA 93 (237)
T ss_dssp THHHHHHHHHHHHHCCE--EEEEEE---CHHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEEEEEEECTT
T ss_pred hHHHHHHHHHHHHhCce--EEEEEc---ChHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEeCCEEEEEeCC
Confidence 56678888998888854 444433 4467889999999999876422111110 011124688888999999876
Q ss_pred cC
Q 005717 302 DD 303 (681)
Q Consensus 302 ~~ 303 (681)
++
T Consensus 94 ~P 95 (237)
T 3muq_A 94 DP 95 (237)
T ss_dssp CT
T ss_pred Ch
Confidence 43
No 160
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=59.89 E-value=24 Score=34.69 Aligned_cols=61 Identities=13% Similarity=0.074 Sum_probs=40.7
Q ss_pred CCeEEEe-cChhHHHHHh---hhcCCccccccccC-ChhHHHHHHccCcceEEecchhhHHHHHhhc
Q 005717 422 GYFVGYQ-TNSFVKDLLT---KKLNFNETRLKNYT-TSEDYHDALSNGEVAAIFDEIPYIKIFLASY 483 (681)
Q Consensus 422 ~~~vg~~-~~s~~~~~l~---~~~~~~~~~~~~~~-~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~ 483 (681)
|++|++. .|+..+.++. ++.+. +.++.... +..+...++.+|++||.+...+++.....+.
T Consensus 96 GK~Iav~~~gs~~~~ll~~~L~~~Gl-dv~~~~~~~~~~~~~~al~~G~vDa~~~~eP~~~~a~~~~ 161 (283)
T 3hn0_A 96 EPALYVFGNGTTPDILTRYYLGRQRL-DYPLNYAFNTAGEITQGILAGKVNRAVLGEPFLSIALRKD 161 (283)
T ss_dssp SCCEECSSTTSHHHHHHHHHHHHHTC-CCCEECSCCSHHHHHHHHHHTSCSEEEECTTHHHHHHHHC
T ss_pred CCEEEecCCCCcHHHHHHHHHHHcCC-ceEEEEccCCHHHHHHHHHcCCCCEEEecccHHHHHHhhC
Confidence 8889975 5665443331 33345 33444444 5889999999999999888778777655444
No 161
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=59.81 E-value=1.1e+02 Score=28.21 Aligned_cols=81 Identities=12% Similarity=0.005 Sum_probs=58.5
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++||||+..... ..+..+++..+.++.+ .+++++... +..+++..|.+|++|+++....
T Consensus 27 g~l~Ig~~~~~~-----------------~~~l~~~l~~f~~~~P-~i~l~i~~~---~~~~~~~~L~~g~~Dl~i~~~~ 85 (238)
T 3onm_A 27 GSLIIGASDDTA-----------------DTLLPFLLNRVATLYP-RLAIDVRVK---RSPFIADMLSSGEVDLAITTAK 85 (238)
T ss_dssp CCEEEEECHHHH-----------------TTHHHHHHHHHHHHCT-TCCEEEEEC---CHHHHHHHHHHTSCSEEEECSC
T ss_pred eeEEEeccchhh-----------------HHHHHHHHHHHHHHCC-CcEEEEEEC---CHHHHHHHHHCCCccEEEEecC
Confidence 679999865211 1456788889988886 367777764 7899999999999999986432
Q ss_pred EeeccccccccccceeecceEEEEEecc
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVKD 302 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~~ 302 (681)
. ..+ -+.++....+++++++..
T Consensus 86 ---~--~~~-~~~~l~~~~~~~v~~~~~ 107 (238)
T 3onm_A 86 ---V--DSH-PHVILRTSPTLWYCSVDY 107 (238)
T ss_dssp ---C---CC-CEEEEEEECEEEEEETTC
T ss_pred ---C--CCc-ceEEeecCCEEEEEcCCC
Confidence 1 112 346788888999888654
No 162
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=58.32 E-value=1.2e+02 Score=29.61 Aligned_cols=69 Identities=7% Similarity=0.088 Sum_probs=42.7
Q ss_pred HHHHHHHHHc-CCCcCeEEEeCCCCCHHHHHHHHHh-Cc-cceEEEeEEEee---ccccccccccceeecceEEEEEecc
Q 005717 229 DMFHAVLQVL-EFPLPYEFVPFHDGSFDELLHKIEK-QE-FDTAVGDTTIVA---NRSTFVDFTLPYSESGVSMLVLVKD 302 (681)
Q Consensus 229 dll~~l~~~l-~f~~~~~~v~~~~g~~~gli~~l~~-g~-~Dia~~~~~it~---~R~~~vdFT~P~~~~~~~~vv~~~~ 302 (681)
++++.+.++. |.+ +++.. ++...++.++.. |. +|+.+..-.... .....++...||....+++++++..
T Consensus 21 ~l~~~F~~~~~gi~--V~~~~---~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvl~~~~~~ 95 (295)
T 3cij_A 21 AFKRAFEEKHPNVE--VQTEA---AGSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIMFAKNQIVLAYRNDS 95 (295)
T ss_dssp HHHHHHHHHCTTCE--EEEEE---ECHHHHHHHHHTSCCCCSEEEESSTHHHHHHHTTTTCCCCEEEEECCEEEEECTTS
T ss_pred HHHHHHHHHCCCce--EEEEe---CcHHHHHHHHHhCCCCCCEEEEcChhhHHHHHhCCCcceeeEEEeeeEEEEEeCCC
Confidence 5666666664 744 55443 356778899988 75 898775311101 1122344567888888999887653
No 163
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=57.73 E-value=52 Score=31.64 Aligned_cols=38 Identities=11% Similarity=0.121 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEE
Q 005717 230 MFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVG 271 (681)
Q Consensus 230 ll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~ 271 (681)
.++...++-| ++++++.+ ..|.....+|.+|++|+...
T Consensus 21 ~v~~~l~k~G--i~veiv~F--~dy~~pN~AL~~G~iD~n~f 58 (246)
T 4ef1_A 21 HVKPLLEKEG--VKLEVTTY--TDYVLPNKALESGDIDANYF 58 (246)
T ss_dssp HHHHHHHHTT--EEEEEEEC--SSSSHHHHHHHHTSCSEEEE
T ss_pred HHHHHHHhcC--CEEEEEEe--CCchhHHHHHHCCCCCEEec
Confidence 3455666778 56888888 46788888999999998753
No 164
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=56.92 E-value=12 Score=37.02 Aligned_cols=56 Identities=13% Similarity=0.215 Sum_probs=47.2
Q ss_pred CCchhhHHHHHHHHHhccC-cc-cccccchhHHHHHHHHHHHHHHhHhhhhhhheeee
Q 005717 350 QHQIGTIFWFSFSTLVFAH-RE-RVVNNLSRFVLIIWVFVVLILTQSYTASLTSMLTV 405 (681)
Q Consensus 350 ~~~~~~~~~~~~~~l~~~~-~~-~~~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~ 405 (681)
..++.+++|+++.++..-| ++ .|.+..+|++.+++.++++.+...+.+++...+..
T Consensus 91 ~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 91 NWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp CSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999998766 44 58999999999999999999999998888765543
No 165
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=54.83 E-value=19 Score=35.41 Aligned_cols=58 Identities=12% Similarity=0.201 Sum_probs=41.5
Q ss_pred CCchhhHHHHHHHHHhccC-c-c--cccc----cchhHHHHHHHHHHHHHHhHhhhhhhheeeecc
Q 005717 350 QHQIGTIFWFSFSTLVFAH-R-E--RVVN----NLSRFVLIIWVFVVLILTQSYTASLTSMLTVQR 407 (681)
Q Consensus 350 ~~~~~~~~~~~~~~l~~~~-~-~--~~~s----~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~ 407 (681)
-.++.+++|..+.++...+ + + .|.. ...+++.++.++.++++.+.++|-+.+.+....
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999998766 3 2 2432 234677777777789999999999998876543
No 166
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=52.31 E-value=32 Score=34.97 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=50.1
Q ss_pred CCchhhHHHHHHHHHhccC-ccc-c--cccchhHHHHHHHHHHHHHHhHhhhhhhheeeecccC
Q 005717 350 QHQIGTIFWFSFSTLVFAH-RER-V--VNNLSRFVLIIWVFVVLILTQSYTASLTSMLTVQRLQ 409 (681)
Q Consensus 350 ~~~~~~~~~~~~~~l~~~~-~~~-~--~s~~~R~l~~~w~~~~lil~s~YtA~L~s~LT~~~~~ 409 (681)
..++..+|||++.++..-| +.. | .+..+++++.+-.+.++++.+.-++-+.+-++.++..
T Consensus 92 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 155 (343)
T 3spc_A 92 VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKR 155 (343)
T ss_dssp CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred cCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 3578999999999998766 443 4 4788999999999999999999999999888776654
No 167
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=50.91 E-value=59 Score=32.26 Aligned_cols=100 Identities=14% Similarity=0.099 Sum_probs=61.9
Q ss_pred CCCHHHHHhCCCeEEEecChhHHHHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcCCceEEEC
Q 005717 412 FTDVKDIQKNGYFVGYQTNSFVKDLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSRYMMVG 491 (681)
Q Consensus 412 i~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~l~~v~ 491 (681)
+.++++|. +.+|++.--...++|| ++.+.+..-+..+.+.|-+. .-|-.|++++-...-.-+.++ +|.+++
T Consensus 116 ~~~~~~l~--g~RIATkyp~l~~~yf-~~~gi~~~ii~l~GsvE~aP---~~GlADaIvDivsTG~TLraN---gL~~ie 186 (299)
T 1h3d_A 116 WDGPLSLN--GKRIATSYPHLLKRYL-DQKGISFKSCLLNGSVEVAP---RAGLADAICDLVSTGATLEAN---GLREVE 186 (299)
T ss_dssp CCCGGGGT--TCEEEESCHHHHHHHH-HHHTCCCEEEECSSCTTHHH---HTTSCSEEEEEESSCHHHHHT---TEEEEE
T ss_pred CCChHHhC--CCEEEeCcHHHHHHHH-HHcCCcEEEEECCCceeecc---CCCccceEEecccCHHHHHHC---CCEEeE
Confidence 45677775 7899998888889999 55566654555566666553 345567776644333333332 567776
Q ss_pred cccccCCcEEEecCCC--CC-hHHHHHHHHhhc
Q 005717 492 PTYRTDGFGFAFPLGS--PL-VPYISRAILKVT 521 (681)
Q Consensus 492 ~~~~~~~~~~~~~k~s--pl-~~~in~~Il~l~ 521 (681)
..+.+.. .++..+.+ +. .+.++..+.+|.
T Consensus 187 ~I~~SsA-~LI~n~~s~~~~k~~~i~~l~~rl~ 218 (299)
T 1h3d_A 187 VIYRSKA-CLIQRDGEMEESKQQLIDKLLTRIQ 218 (299)
T ss_dssp EEEEECE-EEEEESSCCCHHHHHHHHHHHHHHH
T ss_pred EEEeeEE-EEEEeccccChhHHHHHHHHHHHHH
Confidence 6555544 56667776 12 245666666665
No 168
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=50.44 E-value=41 Score=22.85 Aligned_cols=15 Identities=7% Similarity=0.011 Sum_probs=6.5
Q ss_pred HHHHHHHHHHhhcCC
Q 005717 573 LLIYVFNFVCFHRPE 587 (681)
Q Consensus 573 llvfi~E~l~~~~~~ 587 (681)
++++++.+++++|+.
T Consensus 26 ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 26 VVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhhhhHh
Confidence 333344444444444
No 169
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=50.05 E-value=1.9e+02 Score=28.06 Aligned_cols=69 Identities=6% Similarity=0.044 Sum_probs=43.1
Q ss_pred HHHHHHHHHc-CCCcCeEEEeCCCCCHHHHHHHHHh-Cc-cceEEEeEEEee---ccccccccccceeecceEEEEEecc
Q 005717 229 DMFHAVLQVL-EFPLPYEFVPFHDGSFDELLHKIEK-QE-FDTAVGDTTIVA---NRSTFVDFTLPYSESGVSMLVLVKD 302 (681)
Q Consensus 229 dll~~l~~~l-~f~~~~~~v~~~~g~~~gli~~l~~-g~-~Dia~~~~~it~---~R~~~vdFT~P~~~~~~~~vv~~~~ 302 (681)
++++.+.++. |. ++++.. ++-..++.++.+ |. +|+.+..-.... .....++...||....+++++++..
T Consensus 21 ~l~~~F~~~~~gi--~V~~~~---~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~l~i~~~~~~ 95 (296)
T 3cfx_A 21 ELEAEFEAQHPGV--DVQREA---AGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILAYTNES 95 (296)
T ss_dssp HHHHHHHHHSTTC--EEEEEE---CCHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEEEECTTS
T ss_pred HHHHHHHHHCCCc--eEEEEe---CchHHHHHHHHhCCCCCcEEEECChhhHHHHHhCCCccceeeeEeeeEEEEEeCCC
Confidence 5667777773 74 455544 366778899988 64 898775311111 1122344567888888999887653
No 170
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=49.53 E-value=72 Score=29.66 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEEEeec--ccc---cccc--ccceeecceEEEEEe
Q 005717 228 YDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTTIVAN--RST---FVDF--TLPYSESGVSMLVLV 300 (681)
Q Consensus 228 idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~it~~--R~~---~vdF--T~P~~~~~~~~vv~~ 300 (681)
-++++.+.++.|.+ +++.. ++-..++.++. +.+|+++.+-....+ ..+ .++. ..++....+++++++
T Consensus 16 ~~~~~~F~~~~gi~--V~~~~---~~s~~l~~~l~-~~~Dv~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (237)
T 2hxw_A 16 KDIANKYSEKTGVK--VNVNF---GPQATWFEKAK-KDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREAIILTQK 89 (237)
T ss_dssp HHHHHHHHHHHCCC--EEEEE---SSHHHHHHHHH-HHCSEEEESSHHHHHHHHTTSGGGCCGGGCEEEEEEEEEEEEST
T ss_pred HHHHHHHHHHhCce--EEEEe---CChHHHHHHhc-cCCCEEEeCCHHHHHHHHHhcccccCcccccccccCceEEEEeC
Confidence 36777777777855 55543 35677888888 899998775311111 111 2322 235666666666654
Q ss_pred c
Q 005717 301 K 301 (681)
Q Consensus 301 ~ 301 (681)
.
T Consensus 90 ~ 90 (237)
T 2hxw_A 90 G 90 (237)
T ss_dssp T
T ss_pred C
Confidence 3
No 171
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=46.47 E-value=2.2e+02 Score=27.77 Aligned_cols=83 Identities=8% Similarity=-0.070 Sum_probs=49.7
Q ss_pred ccccCChhHHHHHHccCcceEEecchhhHHHHHhhcCCceEEECcccccCCcEEEecCCCCChHHHHHHHHhhccCccHH
Q 005717 448 LKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSRYMMVGPTYRTDGFGFAFPLGSPLVPYISRAILKVTEDKEKM 527 (681)
Q Consensus 448 ~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~Il~l~e~~G~l 527 (681)
+..+.+..+..+.+.+|++++.+.-...........- .+.++-+--.....+++++|+++-.+.--+.|.-|... ..
T Consensus 176 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~i~k~s~~~e~A~~fi~fl~s~--e~ 252 (320)
T 4euo_A 176 IIWWSGGAQSQQLIASAEAPFGSVWNGRMTALEQSGV-KVETSWAQNITAADSLVVPKGTKNKDAAMKFIALATSA--QA 252 (320)
T ss_dssp EEEECSHHHHHHHHHTTSSCEEEEEHHHHHHHHHTTC-CCEEEEEEEEEEEEEEECBTTCSCHHHHHHHHHHHTSH--HH
T ss_pred eeEeCCCchHHHHHHcCCEEEEEeecHHHHHHHhCCC-CeEEEecCceeecceEEEECCCCCHHHHHHHHHHHhCH--HH
Confidence 3556666788889999999887765544433333322 33332221122234789999999777767777766654 44
Q ss_pred HHHHHH
Q 005717 528 ENIEKA 533 (681)
Q Consensus 528 ~~i~~k 533 (681)
+....+
T Consensus 253 q~~~~~ 258 (320)
T 4euo_A 253 QADMAT 258 (320)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 172
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=43.96 E-value=47 Score=32.26 Aligned_cols=54 Identities=11% Similarity=-0.103 Sum_probs=36.3
Q ss_pred CcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEEEeeccccccccccceeecceEEEEEec
Q 005717 241 PLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSMLVLVK 301 (681)
Q Consensus 241 ~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~it~~R~~~vdFT~P~~~~~~~~vv~~~ 301 (681)
.+.+++... +...++..|.+|++|+++... +.....+ -..|+....+++++++.
T Consensus 119 ~v~i~~~~~---~~~~~~~~l~~g~~D~~i~~~---~~~~~~l-~~~~l~~~~~~~v~~~~ 172 (303)
T 3isp_A 119 DVLLDVRIE---DQDHSARLLREGVAMGAVTTE---RNPVPGC-RVHPLGEMRYLPVASRP 172 (303)
T ss_dssp SEEEEEEEC---CHHHHHHHHHTTSCSEEEESC---CSCCTTE-EEEEEEEEEEEEEECHH
T ss_pred cceEEEEec---ChHHHHHHHHcCcceEEEecC---CCCCCCe-EEEEccceeEEEEecch
Confidence 355666664 778899999999999987632 1111222 24677778888887754
No 173
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=41.39 E-value=33 Score=33.85 Aligned_cols=101 Identities=10% Similarity=0.046 Sum_probs=61.1
Q ss_pred CCCCHHHH-HhCCCeEEEecChhHHHHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHHHhhcCCceEE
Q 005717 411 SFTDVKDI-QKNGYFVGYQTNSFVKDLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIFLASYCSRYMM 489 (681)
Q Consensus 411 ~i~s~~dL-~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~~~~~c~~l~~ 489 (681)
.+++++|| . +.+|++.--...++|| ++.+.+-.-+..+.+.|-+ -..|-.|++++-...-.-+.++ +|.+
T Consensus 105 ~~~~~~~l~~--~~RIATkyp~l~~~yf-~~~gi~~~ii~l~GsvE~a---p~~GlADaIvDivsTG~TLraN---gL~~ 175 (289)
T 2vd3_A 105 TIRGPEDIPR--GAVIATEFPGITENYL-REHGIDAEVVELTGSTEIA---PFIGVADLITDLSSTGTTLRMN---HLRV 175 (289)
T ss_dssp SCCSGGGCCT--TCEEEESCHHHHHHHH-HHTTCCCEEEECSSCGGGT---TTTTSCSEEEEEESSTHHHHHT---TEEE
T ss_pred CCCCHHHhcC--CCEEEeCcHHHHHHHH-HHcCCcEEEEECCCceeec---cCCCcccEEEEEeCChHHHHHC---CCEE
Confidence 36677888 5 7899998888889999 5556654444455566544 2456677777654444333333 5777
Q ss_pred ECcccccCCcEEEecCCC-CC-hHHHHHHHHhhc
Q 005717 490 VGPTYRTDGFGFAFPLGS-PL-VPYISRAILKVT 521 (681)
Q Consensus 490 v~~~~~~~~~~~~~~k~s-pl-~~~in~~Il~l~ 521 (681)
++..+.+.. .++..+.+ +. .+.++..+.+|.
T Consensus 176 ie~I~~ssA-~LI~n~~s~~~k~~~i~~l~~rl~ 208 (289)
T 2vd3_A 176 IDTILESSV-KLIANRESYATKSGIIEELRTGIR 208 (289)
T ss_dssp EEEEEEECE-EEEECHHHHHHSHHHHHHHHHHHH
T ss_pred eEEEEeeEE-EEEEccchhhhHHHHHHHHHHHHH
Confidence 755555544 55566665 22 234555555554
No 174
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=40.97 E-value=90 Score=23.06 Aligned_cols=14 Identities=14% Similarity=0.342 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 005717 566 GIASMSSLLIYVFN 579 (681)
Q Consensus 566 ~~g~~lallvfi~E 579 (681)
++|.++++++|++-
T Consensus 13 vlGg~~~lll~~gl 26 (70)
T 2klu_A 13 VLGGVAGLLLFIGL 26 (70)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHH
Confidence 33444444444443
No 175
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=40.34 E-value=14 Score=35.58 Aligned_cols=75 Identities=9% Similarity=0.022 Sum_probs=50.2
Q ss_pred EeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEEEeeccc---cccccccceeecceEEEEEe
Q 005717 224 SGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTTIVANRS---TFVDFTLPYSESGVSMLVLV 300 (681)
Q Consensus 224 ~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~it~~R~---~~vdFT~P~~~~~~~~vv~~ 300 (681)
.|+.-+|+.++.++.+.+ +++.-. .-..++.++.+|.+|+++..-....+.. ....-..|++...+++++|+
T Consensus 18 ~~ll~~L~~~Fek~~gv~--V~~~~~---gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n~lVlV~P~ 92 (236)
T 3lr1_A 18 SGLLKVLLPPFEKKNNVK--VDVIAV---GTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYNDFVIVGPK 92 (236)
T ss_dssp HCHHHHHHHHHHHHHTCE--EEEEEE---CHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEECCEEEEECT
T ss_pred hHHHHHHHHHHHHHhCCe--EEEEEc---ChHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcCcEEEEEEC
Confidence 366678888998888754 555443 4567899999999999876432211110 01112468999999999987
Q ss_pred ccC
Q 005717 301 KDD 303 (681)
Q Consensus 301 ~~~ 303 (681)
.++
T Consensus 93 ~~P 95 (236)
T 3lr1_A 93 NDP 95 (236)
T ss_dssp TCT
T ss_pred CCh
Confidence 754
No 176
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=37.51 E-value=52 Score=22.33 Aligned_cols=14 Identities=7% Similarity=-0.062 Sum_probs=5.6
Q ss_pred HHHHHHHH-HhhcCC
Q 005717 574 LIYVFNFV-CFHRPE 587 (681)
Q Consensus 574 lvfi~E~l-~~~~~~ 587 (681)
++.++.++ +++|+.
T Consensus 25 ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhhhhhh
Confidence 33334344 444443
No 177
>3fd3_A Chromosome replication initiation inhibitor prote; structural genomics, LYSR, PSI-2, structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str}
Probab=35.58 E-value=2.1e+02 Score=25.00 Aligned_cols=67 Identities=7% Similarity=-0.105 Sum_probs=42.4
Q ss_pred eehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEEEeeccccccccccceeecceEEEEEe
Q 005717 225 GFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTTIVANRSTFVDFTLPYSESGVSMLVLV 300 (681)
Q Consensus 225 G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~it~~R~~~vdFT~P~~~~~~~~vv~~ 300 (681)
.+-.+++..+.++.+ +++++... +...+.+.+.+|..|+++.. .......+ -..|+....++++++.
T Consensus 15 ~~l~~~l~~f~~~~~--v~l~l~~~---~~~~~~~~l~~g~d~~~i~~---~~~~~~~l-~~~~l~~~~~~~v~~~ 81 (208)
T 3fd3_A 15 TWFLDAVSKFTGGSD--YLVNIAVD---DQDHTVEWLRGGRVLAAVTA---HDKPVQGC-RVTPLGVLRYHATASP 81 (208)
T ss_dssp TTHHHHHHHHHHTSS--CEEEEEEC---CSSCHHHHHHTTSCSEEEES---CCSCCTTC-EEEEEEEEEEEEEECH
T ss_pred HHHHHHHHHHHhhcC--eEEEEEeC---CcHhHHHHHhcCcceEEEec---CCCCCCCc-eEEEccceEEEEEECh
Confidence 456788899988885 66777765 55678899999944444332 11112222 2456777777777654
No 178
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=35.31 E-value=19 Score=21.45 Aligned_cols=17 Identities=24% Similarity=0.683 Sum_probs=13.9
Q ss_pred CchhhHHHHHHHHHhcc
Q 005717 351 HQIGTIFWFSFSTLVFA 367 (681)
Q Consensus 351 ~~~~~~~~~~~~~l~~~ 367 (681)
..+..++||++++++..
T Consensus 7 ~~l~aa~wF~WGvllns 23 (27)
T 2nr1_A 7 LTLSSAMWFSWGVLLNS 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eehhhhHHHhhHhheec
Confidence 45788999999999853
No 179
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A*
Probab=35.16 E-value=3.4e+02 Score=26.85 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=37.8
Q ss_pred CCHHHHHhCCCeEEEecChhHHHHHhhhcCCccccccccC-ChhHHHHHHccCcceEEecchhhHH
Q 005717 413 TDVKDIQKNGYFVGYQTNSFVKDLLTKKLNFNETRLKNYT-TSEDYHDALSNGEVAAIFDEIPYIK 477 (681)
Q Consensus 413 ~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~l~~g~~~a~i~e~~~~~ 477 (681)
.+++||-. |..||+-.-.=..+.. ...|.-+++.+. +.+.-++.+.+|++||++.-..-++
T Consensus 114 ~~l~~LP~-Ga~VGTSSlRR~aQL~---~~rPdl~i~~lRGNV~TRL~KL~~g~~DaiiLA~AGL~ 175 (313)
T 1gtk_A 114 DSLDALPA-GSIVGTSSLRRQCQLA---ERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLK 175 (313)
T ss_dssp SSGGGCCT-TCEEECCCHHHHHHHH---HHCTTSEEECCCSCHHHHHHHHHTTSCSEEEEEHHHHH
T ss_pred CChhhCCC-CCEEecCCHHHHHHHH---HHCCCCEEEeCCCCHHHHHHHhhCCCCCEEEHhhhHHH
Confidence 35777763 5677773221111121 124555565554 8899999999999999998654443
No 180
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=33.41 E-value=91 Score=29.71 Aligned_cols=79 Identities=6% Similarity=-0.055 Sum_probs=49.0
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++|+||+.... ...+-..++..+.+..+ .+.+++... .. +.++.+|++|+++....
T Consensus 88 ~~l~I~~~~~~-----------------~~~~l~~~l~~f~~~~P-~v~i~~~~~--~~----~~~l~~~~~Dl~i~~~~ 143 (300)
T 3mz1_A 88 GRLRVETASAF-----------------ANLVIIPALPEFHKKYP-DIQIDLGVS--DR----TIDYLAENVDCAIRAGT 143 (300)
T ss_dssp EEEEEEECHHH-----------------HHHTHHHHHHHHHHHCT-TEEEEEEEC--CC----C--CCCTTCCEEEEESS
T ss_pred ceEEEEecHHH-----------------HHHHHHHHHHHHHHHCC-CcEEEEEeC--CC----cccccccCCcEEEEecc
Confidence 67999986521 12456678888888876 356666543 12 12578999999986422
Q ss_pred EeeccccccccccceeecceEEEEEec
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVK 301 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~ 301 (681)
.....+. +.|+....+++++++.
T Consensus 144 ---~~~~~l~-~~~l~~~~~~~v~~~~ 166 (300)
T 3mz1_A 144 ---LTDQSLI-ARRITEMKFVACASRD 166 (300)
T ss_dssp ---CSCTTSE-EEEEEEECEEEEEEHH
T ss_pred ---CCCCCeE-EEEeecceeEEEECHH
Confidence 2222222 3677778888888754
No 181
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=32.27 E-value=1e+02 Score=20.88 Aligned_cols=22 Identities=9% Similarity=0.070 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCC
Q 005717 566 GIASMSSLLIYVFNFVCFHRPE 587 (681)
Q Consensus 566 ~~g~~lallvfi~E~l~~~~~~ 587 (681)
.+|+++.+++.++-++|.||+.
T Consensus 18 vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 18 VVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhheehhh
Confidence 3444445555555555544443
No 182
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=30.92 E-value=24 Score=33.90 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=50.0
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++++||+..... ..+..+++..+.+..+- +++++... ..+.+|.+|++|+++...
T Consensus 91 ~~l~Ig~~~~~~-----------------~~~l~~~l~~f~~~~P~-v~i~~~~~------~~~~~l~~~~~Dl~i~~~- 145 (291)
T 3szp_A 91 GRIRISAPSNLT-----------------KRMMMPMFNAFMEKYPD-IHIELMMS------NQADDLDPTEWDVIFRVG- 145 (291)
T ss_dssp EEEEEEEETTTH-----------------HHHTHHHHHHHHHHCTT-EEEEEEEE------CSCSCCCGGGCSEEEEES-
T ss_pred eEEEEeccHHHH-----------------HHHHHHHHHHHHHHCCC-eEEEEEEe------cCccCccccCceEEEEec-
Confidence 679999875211 14567888888888762 55666543 123467899999998643
Q ss_pred EeeccccccccccceeecceEEEEEec
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVK 301 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~ 301 (681)
+.....+. ..|+....+++++++.
T Consensus 146 --~~~~~~l~-~~~l~~~~~~~v~~~~ 169 (291)
T 3szp_A 146 --PQRDSSLI-ARKIGEVKDILVASPQ 169 (291)
T ss_dssp --CCCCTTCE-EEEEEEECEEEEECHH
T ss_pred --CCCCCCee-EEEecccceEEEECHH
Confidence 22222222 4567778888887654
No 183
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=28.74 E-value=1.3e+02 Score=29.91 Aligned_cols=84 Identities=11% Similarity=0.060 Sum_probs=57.1
Q ss_pred CeEEEe--cChhHHHHHhhhcCC-ccccccccCChhHHHHHHccCcceEEecc--hh-------hHHHHHhhcCCceEEE
Q 005717 423 YFVGYQ--TNSFVKDLLTKKLNF-NETRLKNYTTSEDYHDALSNGEVAAIFDE--IP-------YIKIFLASYCSRYMMV 490 (681)
Q Consensus 423 ~~vg~~--~~s~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~~a~i~e--~~-------~~~~~~~~~c~~l~~v 490 (681)
.+|+++ .|++.+.-. .+... +...+.++.+.+++++++.+|++|..+.. .. .+..+. ++. ++.++
T Consensus 7 ~~VaylGp~GtfS~~Aa-~~~~~~~~~~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~-~~~-~l~Iv 83 (313)
T 3mwb_A 7 VTYTFLGPQGTFTEAAL-MQVPGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIA-TGQ-ELRII 83 (313)
T ss_dssp CEEEEESSTTSHHHHHH-TTSTTGGGSEEEEESSHHHHHHHHHTTSCSEEEEEEESCTTCCHHHHHHHTT-SSS-CCEEE
T ss_pred cEEEEECCCCcHHHHHH-HHHhhcCCccEEecCCHHHHHHHHHcCCCCeeEEEEeecCCCccHHHHHHhh-CCC-CeEEE
Confidence 468885 688887776 33321 34567899999999999999998765541 11 122222 223 68999
Q ss_pred CcccccCCcEEEecCCCCC
Q 005717 491 GPTYRTDGFGFAFPLGSPL 509 (681)
Q Consensus 491 ~~~~~~~~~~~~~~k~spl 509 (681)
++.+......++.++|..+
T Consensus 84 gE~~l~I~h~Ll~~~g~~l 102 (313)
T 3mwb_A 84 REALVPITFVLVARPGVEL 102 (313)
T ss_dssp EEEEEECCCEEEECTTCCG
T ss_pred EEEEEeeeEEEEcCCCCCc
Confidence 9988888888887777543
No 184
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=27.12 E-value=3.4e+02 Score=24.27 Aligned_cols=78 Identities=13% Similarity=0.025 Sum_probs=44.8
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++||||++.. +. ..+-..++..+.++.+ .+++++... +.. + ++.++++|+++..-
T Consensus 19 G~lrI~~~~~--~~---------------~~~L~~~l~~f~~~~P-~i~l~l~~~---~~~--~-~l~~~~~Dlai~~~- 73 (218)
T 2qsx_A 19 ELLVVDVTPS--FA---------------SLWLVPNINDFHQRHP-NIRVKILTG---DGA--V-KNIHGESDLHVRCL- 73 (218)
T ss_dssp CEEEEEECHH--HH---------------HHTHHHHHHHHHHHCT-TCEEEEEEC---CSC--C------CCSEEEEEE-
T ss_pred CcEEEecCHH--HH---------------HHHHHHHHHHHHHHCC-CeEEEEEec---CCc--c-cccCCCCCEEEEcC-
Confidence 6799998652 11 2456778888888886 366777664 222 4 78999999987521
Q ss_pred EeeccccccccccceeecceEEEEEe
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLV 300 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~ 300 (681)
....... -+.|+....++++++.
T Consensus 74 ~~~~~~~---~~~~l~~~~~~~v~sp 96 (218)
T 2qsx_A 74 PLSTHYE---YSQLLCEETLLLIGNT 96 (218)
T ss_dssp ECCSCCS---SEEEEEEEEEEEEEET
T ss_pred CCCCCCc---cceeccCCCEEEEECh
Confidence 0011111 4567788888777764
No 185
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=26.28 E-value=83 Score=30.33 Aligned_cols=72 Identities=8% Similarity=-0.109 Sum_probs=47.0
Q ss_pred ehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEEEeec---cccccccccceeecceEEEEEecc
Q 005717 226 FCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTTIVAN---RSTFVDFTLPYSESGVSMLVLVKD 302 (681)
Q Consensus 226 ~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~it~~---R~~~vdFT~P~~~~~~~~vv~~~~ 302 (681)
+.-++++.+.++.+ .+++.+... +-...+.+|.+|++|+++.+..+... ....+ -..|+...+++++++...
T Consensus 17 ~l~~~~~~f~~~~P-~v~i~v~~~---~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l-~~~~i~~d~lvvvv~~~~ 91 (264)
T 4ecf_A 17 LVEAAGEQYTGEHL-GTFINVQGG---GTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQL-VDHRVAVVGITPIVNKKV 91 (264)
T ss_dssp HHHHHHHHHHHHST-TEEEEEEEE---CHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEEECTTS
T ss_pred HHHHHHHHHHHHCC-CceEEEEeC---CCHHHHHHHHcCCCchhhccCCCChhHHhhccCC-EEEEEEEEEEEEEEcCCC
Confidence 34466777777763 244555443 56788999999999998865433221 00112 257899999999998653
No 186
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=24.95 E-value=71 Score=20.89 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHhh
Q 005717 570 MSSLLIYVFNFVCFH 584 (681)
Q Consensus 570 ~lallvfi~E~l~~~ 584 (681)
.+++++.++-++|+|
T Consensus 23 gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 23 GAALLLGILVFRSRR 37 (38)
T ss_dssp HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHeec
Confidence 344444444455443
No 187
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=24.38 E-value=2.1e+02 Score=28.03 Aligned_cols=79 Identities=9% Similarity=0.105 Sum_probs=57.1
Q ss_pred CeEEEe--cChhHHHHHhhhcCCccccccccCChhHHHHHHccCcceEEecc---------hhhHHHHHhhcCCceEEEC
Q 005717 423 YFVGYQ--TNSFVKDLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDE---------IPYIKIFLASYCSRYMMVG 491 (681)
Q Consensus 423 ~~vg~~--~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e---------~~~~~~~~~~~c~~l~~v~ 491 (681)
.+|+++ .|++.+.-. .+. + .+.++.+.+++++++.+|++|..+.. ...++.+.+ . ++.+++
T Consensus 7 ~~iaylGp~Gtfs~~Aa-~~~-f---~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~--~-~l~I~g 78 (283)
T 2qmx_A 7 WLIAYQGEPGAYSEIAA-LRF-G---EPLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLLLR--R-PVVILA 78 (283)
T ss_dssp CEEEEESCTTSHHHHHH-HHH-S---EEEEESCHHHHHHHHHTTSCSEEEEEEEESSSCBCHHHHHHHHH--S-SEEEEE
T ss_pred cEEEEECCCCCHHHHHH-HHH-h---HhCcCCCHHHHHHHHHCCCCCEEEEeehhcCCCccHHHHHHhhc--C-CcEEEE
Confidence 468885 688887766 322 2 57889999999999999998766542 113344444 3 689999
Q ss_pred cccccCCcEEEecCCCCC
Q 005717 492 PTYRTDGFGFAFPLGSPL 509 (681)
Q Consensus 492 ~~~~~~~~~~~~~k~spl 509 (681)
+.+......+...+|..+
T Consensus 79 E~~l~I~h~Ll~~~g~~l 96 (283)
T 2qmx_A 79 ETFVKVEHCLLGLPGASV 96 (283)
T ss_dssp EEEEECCCEEEECSSCCT
T ss_pred EEEEeeeeeEecCCCCCh
Confidence 988888888888887543
No 188
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=23.72 E-value=73 Score=30.73 Aligned_cols=79 Identities=8% Similarity=0.038 Sum_probs=49.5
Q ss_pred ceEEEEeeccCCccceEEEeecCCCCeeEEeehHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEE
Q 005717 195 RKLKIGVPVREGFTEFIKVVENKNKTTQVSGFCYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTT 274 (681)
Q Consensus 195 ~~lrV~v~~~~p~~~~~~~~~~~~~~~~~~G~~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~ 274 (681)
++|+||+... +. ..+...++..+.+..+ .+.+++... ..+.++.+|++|+++....
T Consensus 93 g~l~I~~~~~--~~---------------~~~l~~~l~~f~~~~P-~v~i~l~~~------~~~~~l~~~~~Dl~i~~~~ 148 (306)
T 3hhg_A 93 GVLSVDSAMP--MV---------------LHLLAPLAAKFNERYP-HIRLSLVSS------EGYINLIERKVDIALRAGE 148 (306)
T ss_dssp EEEEEEBCHH--HH---------------HHTHHHHHHHHHHHCT-TEEEEEECC------SSSHHHHTTSSSCEEESCC
T ss_pred CcEEEEccHH--HH---------------HHHHHHHHHHHHHHCC-CeEEEEEec------cchhhHhhcCccEEEEeCC
Confidence 6799997642 11 2456788888888876 356666532 2345688999999986422
Q ss_pred EeeccccccccccceeecceEEEEEec
Q 005717 275 IVANRSTFVDFTLPYSESGVSMLVLVK 301 (681)
Q Consensus 275 it~~R~~~vdFT~P~~~~~~~~vv~~~ 301 (681)
. ....+. ..|+....+++++++.
T Consensus 149 ~---~~~~l~-~~~L~~~~~~~v~~~~ 171 (306)
T 3hhg_A 149 L---DDSGLR-ARHLFDSRFRVIASPE 171 (306)
T ss_dssp C---CCSSCE-EEEEEEEEEEEEECHH
T ss_pred C---CCCCeE-EEEeeeeEEEEEECHH
Confidence 1 122222 4567777777777644
No 189
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=23.44 E-value=1e+02 Score=29.73 Aligned_cols=71 Identities=7% Similarity=-0.056 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHcCCCcCeEEEeCCCCCHHHHHHHHHhCccceEEEeEEEee-ccccccc-cccceeecceEEEEEec
Q 005717 227 CYDMFHAVLQVLEFPLPYEFVPFHDGSFDELLHKIEKQEFDTAVGDTTIVA-NRSTFVD-FTLPYSESGVSMLVLVK 301 (681)
Q Consensus 227 ~idll~~l~~~l~f~~~~~~v~~~~g~~~gli~~l~~g~~Dia~~~~~it~-~R~~~vd-FT~P~~~~~~~~vv~~~ 301 (681)
.-.+++.+.++.+ .+++.+... +-.+.+.+|.+|++|+++.+..... +..+.-+ ...|+..++++++++..
T Consensus 18 ~~~~~~~F~~~~P-~v~i~v~~~---gS~~gi~~l~~g~~Dig~~~~~~~~~~~~~~~~l~~~~ia~d~lvvvv~~~ 90 (265)
T 4exl_A 18 VEVAADEFGTIHV-GKTVNVQGG---GSGTGLSQVQSGAVDIGNSDVFAEEKDGIDASALVDHKVAVAGLALIVNKE 90 (265)
T ss_dssp HHHHHHHHHHHST-TCEEEEEEE---CHHHHHHHHHTTSSSEEEESSCGGGSTTCCGGGEECCEEEEEEEEEEECTT
T ss_pred HHHHHHHHHHHCC-CceEEEeeC---CcHHHHHHHHcCCCccccccCCcchhhcccccCceEeeEEEEEEEEEECCC
Confidence 3456667777763 144555543 5678899999999999876432211 0011112 25789999999999854
No 190
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=23.40 E-value=1.1e+02 Score=30.65 Aligned_cols=101 Identities=9% Similarity=-0.012 Sum_probs=60.5
Q ss_pred CCCCCHHHHHhCCCeEEEecChhHHHHHhhhcCCccccccccCChhHHHHHHccCcceEEecchhhHHHH-HhhcCCceE
Q 005717 410 PSFTDVKDIQKNGYFVGYQTNSFVKDLLTKKLNFNETRLKNYTTSEDYHDALSNGEVAAIFDEIPYIKIF-LASYCSRYM 488 (681)
Q Consensus 410 ~~i~s~~dL~~~~~~vg~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~a~i~e~~~~~~~-~~~~c~~l~ 488 (681)
.+|++++||. |.++.+..+......+ +.++..... -...|...+|..|-+|+.......+... ..+-++.++
T Consensus 144 kpI~s~~Dlk--GlKiR~~~~~~~~~~~-~alGa~pv~----m~~~Evy~ALq~GvvDg~e~~~~~~~~~~~~Ev~ky~~ 216 (326)
T 3fxb_A 144 TPVTTCSDLD--EVKFRVMTNPLLVESY-KAFGATPTP----LPWGEVYGGLQTNVIQGQENPTFFLYSTKIYEVTDYIT 216 (326)
T ss_dssp SCCSSGGGST--TCEEEECSCHHHHHHH-HHHTSEEEE----CCGGGHHHHHHTTSCCEEEEEHHHHHHTTGGGSCSEEE
T ss_pred CCCCChHHhC--CCEEEecCCHHHHHHH-HHcCCeeee----cCHHHHHHHHHcCCcceEecCHHHHHhccHhhhcceeE
Confidence 4899999998 9999987766666666 666664322 2567889999999999998665433211 111253333
Q ss_pred EECcccccCCcEEEecCCCC--ChHHHHHHHHh
Q 005717 489 MVGPTYRTDGFGFAFPLGSP--LVPYISRAILK 519 (681)
Q Consensus 489 ~v~~~~~~~~~~~~~~k~sp--l~~~in~~Il~ 519 (681)
..+-. .....+++.+..- |-+....+|..
T Consensus 217 ~~~~~--~~~~~~~~n~~~w~~L~~e~q~~i~~ 247 (326)
T 3fxb_A 217 YAGHN--NFTTAVMANKDFYDGLSAEDQQLVQN 247 (326)
T ss_dssp ECCCC--EEEEEEEEEHHHHHHSCHHHHHHHHH
T ss_pred EcCcc--ccceEEEEeHHHHhcCCHHHHHHHHH
Confidence 33322 2234566665521 44444444443
No 191
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=22.15 E-value=2.2e+02 Score=27.57 Aligned_cols=82 Identities=9% Similarity=-0.010 Sum_probs=57.2
Q ss_pred CeEEEe--cChhHHHHHhhhcCCccc--cccccCChhHHHHHHccCcceEEecc---------hhhHHHHHhhcCCceEE
Q 005717 423 YFVGYQ--TNSFVKDLLTKKLNFNET--RLKNYTTSEDYHDALSNGEVAAIFDE---------IPYIKIFLASYCSRYMM 489 (681)
Q Consensus 423 ~~vg~~--~~s~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~a~i~e---------~~~~~~~~~~~c~~l~~ 489 (681)
.+|+++ .|++.+.-..+ .++.. .+.++.+.+++++++.+|++|..+.. ...++.+.+ . ++.+
T Consensus 4 ~~iaylGp~Gtfs~~Aa~~--~f~~~~~~~~~~~s~~~v~~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~--~-~l~I 78 (267)
T 2qmw_A 4 MQLYYLGPKGTFSYLACRQ--YFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVADALAQ--Q-DVFA 78 (267)
T ss_dssp CEEEEECSTTSHHHHHHHH--HCCTTSSEEEEESSHHHHHHHHHHCSSEEEEEEEESCSSSCSHHHHHHHHT--T-SSEE
T ss_pred cEEEEECCCCcHHHHHHHH--hhccCCceEEEcCCHHHHHHHHHcCCCCEEEEEehhcCCCChHHHHHHhhc--C-CcEE
Confidence 467775 68888776623 23433 37899999999999999998876542 112333333 2 5899
Q ss_pred ECcccccCCcEEEecCCCCC
Q 005717 490 VGPTYRTDGFGFAFPLGSPL 509 (681)
Q Consensus 490 v~~~~~~~~~~~~~~k~spl 509 (681)
+++.+......+...+|..+
T Consensus 79 ~gE~~l~I~h~Ll~~~g~~l 98 (267)
T 2qmw_A 79 HGEIRLDINFALYGNGTDSI 98 (267)
T ss_dssp EEEEEEECCEEEECCSSCCS
T ss_pred EEEEEEEeeeEEEecCCCCH
Confidence 99988888888888887543
Done!