Your job contains 1 sequence.
>005719
MTAEERMGSAGCEDGDIDKFPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTAL
KMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGAC
DYLLKPVRIEELKNIWQHVIRRKKVGPKDQNKLLNQENSRVGAGEGGQGAMSTGNSDQNG
KSNRKRKDQDGDEDEDGDDDGHENEDSTTQKKPRVVWTPELHRKFVGAVNQLGVDKAVPK
KILDLMNVEGLTRENVASHLQKFRLYLKRLSNETPQAGMVAALGSKDSSYLRIGALDGFG
DLRSLNSPGRLSSSAISSSYVPGNMFGRFNSTSGLSMHGIASSGMIQPGHSQSFNTSFNT
IGKIQQAMFPANRISNLFQGVRTSSELNQLPQSKSTTQIGDFNHINSPTTSMAATGFTDA
TVAVGSSSSSVSTSSSNIMMLQGNLHQAHSRDAYGNQSSLSVASLNQESFDVGVRNSSNF
LDHSRCNESWQDAVQLSSNSLPLSEPFIHDQMPPNLRNTLSSTSCLDISSSMATSTHLED
SRGDLSCQPGLIGNVIQNYTSKQQWLEHKQGYNQNLNNPFSNVNTLLSGNCTMGPFSQSM
DQSNSPYIAQLTGVEKAPLNTKLRSNDDFLLEQSKSHDGFIQNNYDPMDDMMSGILKRDS
NETILMDGELGFDAYSLSSCM
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005719
(681 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2040194 - symbol:RR12 "response regulator 12" ... 901 2.6e-96 2
TAIR|locus:2116587 - symbol:RR10 "response regulator 10" ... 541 1.8e-88 3
TAIR|locus:2093668 - symbol:RR1 "response regulator 1" sp... 781 4.0e-83 2
TAIR|locus:2130095 - symbol:RR2 "response regulator 2" sp... 771 2.2e-80 2
TAIR|locus:2065398 - symbol:RR14 "response regulator 14" ... 677 1.3e-66 1
TAIR|locus:2008585 - symbol:ARR11 "response regulator 11"... 659 1.1e-64 1
UNIPROTKB|Q7Y0W3 - symbol:Q7Y0W3 "Two-component response ... 303 3.0e-45 2
UNIPROTKB|Q7Y0W5 - symbol:EHD1 "Two-component response re... 303 3.0e-45 2
TAIR|locus:2155954 - symbol:APRR4 "pseudo-response regula... 437 4.9e-41 1
TAIR|locus:2141020 - symbol:APRR2 species:3702 "Arabidops... 201 1.2e-24 2
TAIR|locus:2175364 - symbol:AT5G05090 "AT5G05090" species... 237 3.6e-21 2
TAIR|locus:2148348 - symbol:BOA "AT5G59570" species:3702 ... 250 2.1e-20 1
TAIR|locus:2058445 - symbol:MYBC1 "AT2G40970" species:370... 238 4.2e-19 1
TAIR|locus:2103247 - symbol:AT3G10760 "AT3G10760" species... 237 7.1e-19 2
TAIR|locus:2044376 - symbol:PRR9 "pseudo-response regulat... 250 2.7e-18 1
TAIR|locus:2199342 - symbol:APRR6 "pseudo-response regula... 168 2.9e-17 2
TAIR|locus:2151206 - symbol:PRR7 "pseudo-response regulat... 232 4.7e-17 2
TAIR|locus:2163198 - symbol:TOC1 "TIMING OF CAB EXPRESSIO... 238 1.2e-16 1
TAIR|locus:2167639 - symbol:GLK2 "AT5G44190" species:3702... 231 1.7e-16 1
UNIPROTKB|Q5Z5I4 - symbol:GLK1 "Probable transcription fa... 218 9.5e-15 1
TIGR_CMR|SPO_1679 - symbol:SPO_1679 "DNA-binding response... 186 1.7e-13 1
TIGR_CMR|CHY_0606 - symbol:CHY_0606 "DNA-binding response... 181 5.7e-13 1
TIGR_CMR|BA_0577 - symbol:BA_0577 "response regulator" sp... 179 9.4e-13 1
UNIPROTKB|Q4GZK8 - symbol:rr3 "Type A response regulator ... 174 3.2e-12 1
TIGR_CMR|BA_1955 - symbol:BA_1955 "DNA-binding response r... 172 5.3e-12 1
TIGR_CMR|BA_0585 - symbol:BA_0585 "DNA-binding response r... 170 8.7e-12 1
TIGR_CMR|BA_3900 - symbol:BA_3900 "lantibiotic biosynthes... 168 1.4e-11 1
UNIPROTKB|P0A5Z4 - symbol:mtrA "DNA-binding response regu... 166 4.7e-11 1
UNIPROTKB|O53894 - symbol:mprA "Response regulator MprA" ... 167 5.5e-11 1
UNIPROTKB|Q4GZK5 - symbol:rr6 "Type A response regulator ... 162 6.3e-11 1
UNIPROTKB|P0A5Z6 - symbol:prrA "Transcriptional regulator... 168 7.1e-11 1
TAIR|locus:2119425 - symbol:UNE16 "unfertilized embryo sa... 177 8.5e-11 1
UNIPROTKB|P14375 - symbol:zraR species:83333 "Escherichia... 182 8.7e-11 1
TIGR_CMR|GSU_0008 - symbol:GSU_0008 "sensory box histidin... 183 9.3e-11 1
TIGR_CMR|SO_0622 - symbol:SO_0622 "DNA-binding response r... 163 1.5e-10 1
TIGR_CMR|GSU_2693 - symbol:GSU_2693 "response regulator" ... 158 1.7e-10 1
TIGR_CMR|GSU_1989 - symbol:GSU_1989 "sigma-54 dependent D... 179 1.9e-10 1
UNIPROTKB|A5U0E5 - symbol:phoP "Putative two component sy... 169 1.9e-10 1
UNIPROTKB|P71814 - symbol:phoP "Possible two component sy... 169 1.9e-10 1
TAIR|locus:2093726 - symbol:AT3G24120 species:3702 "Arabi... 174 2.0e-10 1
TAIR|locus:2095933 - symbol:MYR2 species:3702 "Arabidopsi... 177 2.4e-10 1
TIGR_CMR|DET_0232 - symbol:DET_0232 "DNA-binding response... 163 3.0e-10 1
TAIR|locus:2085984 - symbol:AT3G25790 species:3702 "Arabi... 175 3.0e-10 1
TIGR_CMR|DET_1540 - symbol:DET_1540 "DNA-binding response... 162 3.1e-10 1
TAIR|locus:2206415 - symbol:APL "ALTERED PHLOEM DEVELOPME... 170 3.5e-10 2
TIGR_CMR|GSU_1117 - symbol:GSU_1117 "response regulator" ... 155 3.6e-10 1
TAIR|locus:2011286 - symbol:ARR7 "response regulator 7" s... 155 3.6e-10 1
TAIR|locus:2172394 - symbol:MYR1 "myb-related protein 1" ... 175 4.1e-10 1
UNIPROTKB|Q9KQD5 - symbol:VC_2065 "Chemotaxis protein Che... 154 4.6e-10 1
TIGR_CMR|VC_2065 - symbol:VC_2065 "chemotaxis protein Che... 154 4.6e-10 1
TAIR|locus:2087740 - symbol:AT3G12730 species:3702 "Arabi... 164 4.6e-10 1
TIGR_CMR|BA_0651 - symbol:BA_0651 "DNA-binding response r... 161 4.8e-10 1
TAIR|locus:2031210 - symbol:AT1G25550 species:3702 "Arabi... 173 5.2e-10 2
TIGR_CMR|CPS_1750 - symbol:CPS_1750 "transcriptional regu... 165 5.4e-10 1
TIGR_CMR|CPS_1260 - symbol:CPS_1260 "putative nitrate/nit... 153 5.8e-10 1
TIGR_CMR|BA_1312 - symbol:BA_1312 "DNA-binding response r... 160 6.2e-10 1
TAIR|locus:2026863 - symbol:AT1G68670 species:3702 "Arabi... 172 6.3e-10 2
TIGR_CMR|BA_5275 - symbol:BA_5275 "DNA-binding response r... 159 6.6e-10 1
TIGR_CMR|NSE_0512 - symbol:NSE_0512 "response regulator/G... 173 9.2e-10 1
UNIPROTKB|Q4KG39 - symbol:cheY "Chemotaxis protein CheY" ... 151 9.6e-10 1
TIGR_CMR|CHY_1018 - symbol:CHY_1018 "chemotaxis response ... 151 9.6e-10 1
TAIR|locus:2170723 - symbol:ARR6 "response regulator 6" s... 151 9.6e-10 1
TAIR|locus:2097870 - symbol:RR5 "response regulator 5" sp... 150 1.2e-09 1
UNIPROTKB|Q3JZR1 - symbol:csrR "DNA-binding response regu... 160 1.2e-09 1
UNIPROTKB|Q3ADA5 - symbol:cheY2 "Chemotaxis protein CheY"... 149 1.6e-09 1
TIGR_CMR|CHY_1032 - symbol:CHY_1032 "chemotaxis protein C... 149 1.6e-09 1
TIGR_CMR|BA_4920 - symbol:BA_4920 "DNA-binding response r... 156 1.8e-09 2
TAIR|locus:2063746 - symbol:AT2G03500 "AT2G03500" species... 169 2.3e-09 1
TIGR_CMR|GSU_1495 - symbol:GSU_1495 "sigma-54 dependent D... 169 2.5e-09 1
TIGR_CMR|BA_1497 - symbol:BA_1497 "DNA-binding response r... 159 2.9e-09 1
UNIPROTKB|Q4K714 - symbol:PFL_4888 "Sigma-54 dependent DN... 168 3.1e-09 2
TIGR_CMR|CHY_1367 - symbol:CHY_1367 "C4-dicarboxylate res... 155 3.2e-09 1
TAIR|locus:2010297 - symbol:AT1G49560 "AT1G49560" species... 165 3.3e-09 1
UNIPROTKB|Q4GZK3 - symbol:rr8 "Type A response regulator ... 146 3.3e-09 1
UNIPROTKB|Q48GG3 - symbol:cheY2 "Chemotaxis protein CheY"... 145 4.2e-09 1
TAIR|locus:2041539 - symbol:AT2G42660 "AT2G42660" species... 159 5.2e-09 1
TAIR|locus:2194584 - symbol:ARR4 "response regulator 4" s... 159 5.7e-09 1
TIGR_CMR|SPO_0251 - symbol:SPO_0251 "DNA-binding response... 156 5.8e-09 1
DICTYBASE|DDB_G0284331 - symbol:regA "response regulator ... 176 5.9e-09 2
TIGR_CMR|CHY_0092 - symbol:CHY_0092 "DNA-binding response... 154 6.2e-09 2
TIGR_CMR|DET_0135 - symbol:DET_0135 "DNA-binding response... 155 6.7e-09 1
TIGR_CMR|BA_2212 - symbol:BA_2212 "DNA-binding response r... 154 8.2e-09 1
TIGR_CMR|SO_2426 - symbol:SO_2426 "DNA-binding response r... 154 8.2e-09 1
TAIR|locus:2157146 - symbol:AT5G45580 species:3702 "Arabi... 158 8.3e-09 1
UNIPROTKB|Q52884 - symbol:cheY2 "CheY2" species:382 "Sino... 142 8.8e-09 1
TIGR_CMR|SO_3209 - symbol:SO_3209 "chemotaxis protein Che... 142 8.8e-09 1
UNIPROTKB|Q9AE24 - symbol:rprY "Transcriptional regulator... 155 8.9e-09 1
TAIR|locus:2100880 - symbol:AT3G04450 species:3702 "Arabi... 163 1.1e-08 1
TAIR|locus:2089260 - symbol:AT3G13040 species:3702 "Arabi... 163 1.1e-08 1
TAIR|locus:2115070 - symbol:AT4G37180 species:3702 "Arabi... 161 1.2e-08 1
TIGR_CMR|BA_0996 - symbol:BA_0996 "sensor histidine kinas... 167 1.2e-08 1
UNIPROTKB|Q9KUA1 - symbol:VC_0622 "Sensory box sensor his... 168 1.4e-08 1
TIGR_CMR|VC_0622 - symbol:VC_0622 "sensory box sensor his... 168 1.4e-08 1
UNIPROTKB|Q8EF67 - symbol:cheY "Chemotaxis signal transdu... 140 1.4e-08 1
UNIPROTKB|Q9KKK8 - symbol:VC_A1096 "Chemotaxis protein Ch... 140 1.4e-08 1
TIGR_CMR|CJE_1261 - symbol:CJE_1261 "chemotaxis protein C... 140 1.4e-08 1
TIGR_CMR|SO_2120 - symbol:SO_2120 "chemotaxis protein Che... 140 1.4e-08 1
TIGR_CMR|VC_A1096 - symbol:VC_A1096 "chemotaxis protein C... 140 1.4e-08 1
UNIPROTKB|O69730 - symbol:tcrX "Probable transcriptional ... 153 1.5e-08 1
TAIR|locus:2045761 - symbol:AT2G01060 species:3702 "Arabi... 157 1.6e-08 1
WARNING: Descriptions of 331 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2040194 [details] [associations]
symbol:RR12 "response regulator 12" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=IGI;TAS]
[GO:0009735 "response to cytokinin stimulus" evidence=IGI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 GO:GO:0010380
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0080022
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0048367
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG2204 HOGENOM:HOG000238840
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:BE522295
IPI:IPI00541861 IPI:IPI01019479 RefSeq:NP_180090.6 UniGene:At.19775
ProteinModelPortal:P62598 SMR:P62598 IntAct:P62598 STRING:P62598
GeneID:817056 KEGG:ath:AT2G25180 GeneFarm:3926 TAIR:At2g25180
InParanoid:P62598 OMA:QQAIMAN ArrayExpress:P62598
Genevestigator:P62598 GermOnline:AT2G25180 Uniprot:P62598
Length = 596
Score = 901 (322.2 bits), Expect = 2.6e-96, Sum P(2) = 2.6e-96
Identities = 206/406 (50%), Positives = 259/406 (63%)
Query: 17 IDKFPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISD 76
+D+FP+GMRVLAVDDD TCLK+LE+ LR CQY VT TNQA AL++LREN+N FDLVISD
Sbjct: 10 LDQFPVGMRVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELLRENKNKFDLVISD 69
Query: 77 VHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIW 136
V MPDMDGFKLLE VGLEMDLPVIMLSA+ D K VMKG+THGACDYLLKPVRIEELKNIW
Sbjct: 70 VDMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNIW 129
Query: 137 QHVIRRKKVGPKDQNKLLNQENSRVGAGEGGQGAMSTGNSDQN-GKSNRKRKXXXXXXXX 195
QHV+R + D+N+ N + G G +G GNSDQN GK NRKRK
Sbjct: 130 QHVVRSRF----DKNRGSNNNGDKRD-GSGNEGV---GNSDQNNGKGNRKRKDQYNEDED 181
Query: 196 XXXXXXXXXXXSTTQKKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTREN 255
S QKK RVVWT ELH+KFV AVNQLG +KA+PKKILDLMNVE LTREN
Sbjct: 182 EDRDDNDD---SCAQKKQRVVWTVELHKKFVAAVNQLGYEKAMPKKILDLMNVEKLTREN 238
Query: 256 VASHLQKFRLYLKRLSNETPQAGMVAALGSKDSSYLRIGALDGFGDLRSLNSPGRLSSSA 315
VASHLQKFRLYLKR+S Q ++A + + ++++ LDGF G+ A
Sbjct: 239 VASHLQKFRLYLKRISGVANQQAIMA---NSELHFMQMNGLDGFHHRPIPVGSGQYHGGA 295
Query: 316 ISS-SYVPGNMFGRFNSTSGLSMHGIAS--SGMIQPGHSQSFNTSFNTIGKIQQAMFPAN 372
+ S+ P + GR N+ SG+ + ++S +GM +Q+ F+ + +
Sbjct: 296 PAMRSFPPNGILGRLNTPSGIGVRSLSSPPAGMFL--QNQTDIGKFHHVSSLPLNHSDGG 353
Query: 373 RISNLFQGVRTSSELNQLPQSKSTTQIGDFNHINSPTTSMAATGFT 418
N+ QG+ E +QL + + ++ + N + TSMA F+
Sbjct: 354 ---NILQGLPMPLEFDQLQTNNNKSRNMNSNK-SIAGTSMAFPSFS 395
Score = 76 (31.8 bits), Expect = 2.6e-96, Sum P(2) = 2.6e-96
Identities = 29/113 (25%), Positives = 55/113 (48%)
Query: 579 PF-SNVNTLLSGNC-TMGP--FSQSMD-QSNS---PYIAQLTGVEKAPLNTKLRSNDDFL 630
PF + NTL S T P F ++ D SN+ P + + L + + F+
Sbjct: 484 PFCDSANTLSSPALDTTNPRAFCRNTDFDSNTNVQPGVFYGPSTDAMALLSSSNPKEGFV 543
Query: 631 LEQSKSHDG-FIQNNYDPMDDMMSGILKRDSNETILMDGELGFDAYS-LSSCM 681
+ Q K G F+ + +DD+++ +K++ ++ L G+LG+ +S L +C+
Sbjct: 544 VGQQKLQSGGFMVADAGSLDDIVNSTMKQEQSQGDLSGGDLGYGGFSSLRTCI 596
>TAIR|locus:2116587 [details] [associations]
symbol:RR10 "response regulator 10" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0010380 "regulation of chlorophyll biosynthetic
process" evidence=IGI] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=IGI;RCA] [GO:0048367 "shoot system
development" evidence=IGI] [GO:0080022 "primary root development"
evidence=IGI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 EMBL:AJ005195
EMBL:AL021636 EMBL:AL161580 EMBL:BT003158 IPI:IPI00544491
PIR:T04653 RefSeq:NP_194920.1 UniGene:At.122 PDB:1IRZ PDBsum:1IRZ
ProteinModelPortal:O49397 SMR:O49397 IntAct:O49397 STRING:O49397
PRIDE:O49397 EnsemblPlants:AT4G31920.1 GeneID:829322
KEGG:ath:AT4G31920 GeneFarm:2450 TAIR:At4g31920 eggNOG:COG2204
HOGENOM:HOG000238840 InParanoid:O49397 OMA:THELHNK PhylomeDB:O49397
ProtClustDB:CLSN2685991 EvolutionaryTrace:O49397
Genevestigator:O49397 GermOnline:AT4G31920 GO:GO:0031537
InterPro:IPR017053 PIRSF:PIRSF036392 Uniprot:O49397
Length = 552
Score = 541 (195.5 bits), Expect = 1.8e-88, Sum P(3) = 1.8e-88
Identities = 104/167 (62%), Positives = 127/167 (76%)
Query: 17 IDKFPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISD 76
+D+FP+GMRVLAVDDD TCL++L+ L+ CQY VT TNQA TAL++LREN+N FDLVISD
Sbjct: 10 LDQFPVGMRVLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELLRENKNKFDLVISD 69
Query: 77 VHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIW 136
V MPDMDGFKLLE VGLEMDLPVIMLSA+ D K VMKG+ HGACDYLLKPVRIEELKNIW
Sbjct: 70 VDMPDMDGFKLLELVGLEMDLPVIMLSAHSDPKYVMKGVKHGACDYLLKPVRIEELKNIW 129
Query: 137 QHVIRRKKVGPKDQNKLLNQENSRVGAGEGGQGAMSTGNSDQNGKSN 183
QHV+R+ K+ K+++ + N + A + ++ G N
Sbjct: 130 QHVVRKSKL-KKNKSNVSNGSGNCDKANRKRKEQYEEEEEEERGNDN 175
Score = 299 (110.3 bits), Expect = 1.8e-88, Sum P(3) = 1.8e-88
Identities = 79/196 (40%), Positives = 105/196 (53%)
Query: 173 TGNSDQNGKSNRKRKXXXXXXXXXXXXXXXXXXXSTTQKKPRVVWTPELHRKFVGAVNQL 232
+GN D K+NRKRK T QKKPRV+WT ELH KF+ AV+ L
Sbjct: 149 SGNCD---KANRKRKEQYEEEEEEERGNDNDD--PTAQKKPRVLWTHELHNKFLAAVDHL 203
Query: 233 GVDKAVPKKILDLMNVEGLTRENVASHLQKFRLYLKRLSNETPQAGMVAALGSKDSSYLR 292
GV++AVPKKILDLMNV+ LTRENVASHLQKFR+ LK++S++ Q AA+ DS +++
Sbjct: 204 GVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKVSDDAIQQANRAAI---DSHFMQ 260
Query: 293 IGALDGFGDLRSLNSPGRLSSSAISSSYVPGNMFGRFNSTSGLSMHGIASSGMIQPGHSQ 352
+ + G G + + S M ++S L +GM QP S
Sbjct: 261 MNSQKGLGGFYHHHRGIPVGSGQFHGGTT---MMRHYSSNRNLGRLNSLGAGMFQPV-SS 316
Query: 353 SFNTSFNTIGKIQQAM 368
SF + N G I Q +
Sbjct: 317 SFPRNHNDGGNILQGL 332
Score = 76 (31.8 bits), Expect = 1.8e-88, Sum P(3) = 1.8e-88
Identities = 27/110 (24%), Positives = 51/110 (46%)
Query: 573 NQNLN-NPFSNV-NTLL-SGNCTMGPFSQSMDQSNSPYIAQLTG-VEKAPLNTKLRSNDD 628
N NL+ NP S NT S N F + + P A +G V +A L N+
Sbjct: 430 NPNLDTNPASLCRNTGFGSTNAAQTDFFYPLQMNQQP--ANNSGPVTEAQLFRSSNPNEG 487
Query: 629 FLLEQSKSHDGFIQNNYDPMDDMMSGILKRDSNETILMDGELGFDAYSLS 678
L+ Q K G + ++ +DD+++ ++ ++ +++ +G+ D + S
Sbjct: 488 LLMGQQKLQSGLMASDAGSLDDIVNSLMTQEQSQSDFSEGDWDLDGLAHS 537
>TAIR|locus:2093668 [details] [associations]
symbol:RR1 "response regulator 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI;RCA] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
[GO:0006487 "protein N-linked glycosylation" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0010029
"regulation of seed germination" evidence=RCA] [GO:0010043
"response to zinc ion" evidence=RCA] [GO:0016558 "protein import
into peroxisome matrix" evidence=RCA] [GO:0048831 "regulation of
shoot system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0009736 GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 eggNOG:COG0745
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB016471
EMBL:AP001308 EMBL:AB028608 EMBL:AY056099 EMBL:AK316883
IPI:IPI00534841 IPI:IPI00547650 PIR:T51246 RefSeq:NP_566561.2
RefSeq:NP_850600.2 UniGene:At.183 UniGene:At.48672
ProteinModelPortal:Q940D0 SMR:Q940D0 IntAct:Q940D0 STRING:Q940D0
PaxDb:Q940D0 PRIDE:Q940D0 EnsemblPlants:AT3G16857.2 GeneID:820940
KEGG:ath:AT3G16857 GeneFarm:3920 TAIR:At3g16857
HOGENOM:HOG000034078 InParanoid:Q940D0 OMA:RTCLYEV PhylomeDB:Q940D0
ProtClustDB:CLSN2680844 Genevestigator:Q940D0 GermOnline:AT3G16857
Uniprot:Q940D0
Length = 690
Score = 781 (280.0 bits), Expect = 4.0e-83, Sum P(2) = 4.0e-83
Identities = 176/392 (44%), Positives = 240/392 (61%)
Query: 17 IDKFPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISD 76
++ FP G+RVL VDDDPTCL +LE LR C YEVT N+A AL +LR+N++ FD+VISD
Sbjct: 30 VEMFPSGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLLRKNKHGFDIVISD 89
Query: 77 VHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIW 136
VHMPDMDGFKLLEHVGLEMDLPVIM+SA +V+KG+THGA DYL+KPVR+E LKNIW
Sbjct: 90 VHMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRMEALKNIW 149
Query: 137 QHVIRRKKV--------GPKDQNKLLNQENSRVGAG----EGGQGAMSTGNSDQNGKSNR 184
QHV+R+++ G ++ Q+ R G G GG+ A+ +S N +N
Sbjct: 150 QHVVRKRRSEWSVPEHSGSIEETGERQQQQHRGGGGGAAVSGGEDAVDDNSSSVNEGNNW 209
Query: 185 KRKXXXXXXXXXXXXXXXXXXXSTTQKKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILD 244
+ ++ KKPRVVW+ ELH++FV AVNQLGV+KAVPKKIL+
Sbjct: 210 RSSSRKRKDEEGEEQGDDKDEDASNLKKPRVVWSVELHQQFVAAVNQLGVEKAVPKKILE 269
Query: 245 LMNVEGLTRENVASHLQKFRLYLKRLSNETPQAGMV--AALGSKDSSYLRIGALDGFGDL 302
LMNV GLTRENVASHLQK+R+YL+RL + G + + + +D+S+ + L+GF DL
Sbjct: 270 LMNVPGLTRENVASHLQKYRIYLRRLGGVSQHQGNLNNSFMTGQDASFGPLSTLNGF-DL 328
Query: 303 RSLNSPGRLSSSAISSSYVPGNMFGRFNSTSGLSMHGIASSGMIQPGHSQSFNTSFNTIG 362
++L G+L + +++ G GR + +S G+ S ++ SF+ + G
Sbjct: 329 QALAVTGQLPAQSLAQLQAAG--LGR---PAMVSKSGLPVSSIVDERSIFSFDNTKTRFG 383
Query: 363 KI--QQAMFPANRIS-NLFQGVRTSSELNQLP 391
+ P + NL GV T + QLP
Sbjct: 384 EGLGHHGQQPQQQPQMNLLHGVPTGLQ-QQLP 414
Score = 71 (30.1 bits), Expect = 4.0e-83, Sum P(2) = 4.0e-83
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 645 YDPMDDMMSGILKRDSNETILMDGELGFDAYSLSS 679
Y +D+MS +LK++ + DGE FDAYS+ +
Sbjct: 655 YSNQEDLMSALLKQEGIAPV--DGEFDFDAYSIDN 687
>TAIR|locus:2130095 [details] [associations]
symbol:RR2 "response regulator 2" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=RCA;TAS] [GO:0009723 "response
to ethylene stimulus" evidence=IMP] [GO:0009735 "response to
cytokinin stimulus" evidence=IEP;IGI] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0009873 "ethylene mediated signaling pathway"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0010029 "regulation of seed germination" evidence=RCA]
[GO:0031537 "regulation of anthocyanin metabolic process"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009873 GO:GO:0010119 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 GO:GO:0010150 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:Z97340 EMBL:AL161543 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG2204 InterPro:IPR017053 PIRSF:PIRSF036392
ProtClustDB:CLSN2680844 EMBL:AB016472 EMBL:AJ005196 EMBL:DQ473518
EMBL:DQ473519 EMBL:DQ473520 EMBL:DQ473521 EMBL:AK175378
EMBL:AK175737 EMBL:AK175959 EMBL:AK176614 IPI:IPI00518324
PIR:D71427 PIR:T51247 RefSeq:NP_193346.4 UniGene:At.21955
ProteinModelPortal:Q9ZWJ9 SMR:Q9ZWJ9 IntAct:Q9ZWJ9 STRING:Q9ZWJ9
PaxDb:Q9ZWJ9 PRIDE:Q9ZWJ9 EnsemblPlants:AT4G16110.1 GeneID:827297
KEGG:ath:AT4G16110 GeneFarm:3921 TAIR:At4g16110 InParanoid:Q9ZWJ9
OMA:ILERMLM PhylomeDB:Q9ZWJ9 Genevestigator:Q9ZWJ9
GermOnline:AT4G16110 Uniprot:Q9ZWJ9
Length = 664
Score = 771 (276.5 bits), Expect = 2.2e-80, Sum P(2) = 2.2e-80
Identities = 179/383 (46%), Positives = 235/383 (61%)
Query: 18 DKFPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDV 77
D FP +RVL VDDDPTCL +LE L C Y VT N+A +AL +LR+N+N FD+VISDV
Sbjct: 22 DPFPANLRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLLRKNKNGFDIVISDV 81
Query: 78 HMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQ 137
HMPDMDGFKLLEHVGLEMDLPVIM+SA +V+KG+THGA DYL+KPVRIE LKNIWQ
Sbjct: 82 HMPDMDGFKLLEHVGLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRIEALKNIWQ 141
Query: 138 HVIRRKK----VGPKDQNKLLNQENSRVGAGEGGQGAMSTGNS--DQNGKSNRKRKXXXX 191
HV+R+K+ V + + R + + A + +S + NG+S+RKRK
Sbjct: 142 HVVRKKRNEWNVSEHSGGSIEDTGGDRDRQQQHREDADNNSSSVNEGNGRSSRKRKEEEV 201
Query: 192 XXXXXXXXXXXXXXXSTTQKKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGL 251
S++ KKPRVVW+ ELH++FV AVNQLGVDKAVPKKIL++MNV GL
Sbjct: 202 DDQGDDKED------SSSLKKPRVVWSVELHQQFVAAVNQLGVDKAVPKKILEMMNVPGL 255
Query: 252 TRENVASHLQKFRLYLKRLSNETPQAGMV--AALGSKDSSYLRIGALDGFGDLRSLNSPG 309
TRENVASHLQK+R+YL+RL + G + + + +D S+ + +L+GF DL+SL G
Sbjct: 256 TRENVASHLQKYRIYLRRLGGVSQHQGNMNHSFMTGQDQSFGPLSSLNGF-DLQSLAVTG 314
Query: 310 RLSSSAISSSYVPGNMFGRFNSTSGLSMHGIASSGMIQPGHSQSFNTSFNTIGKIQ-QAM 368
+L +++ G GR L+ G++ S ++ +F G Q M
Sbjct: 315 QLPPQSLAQLQAAG--LGR----PTLAKPGMSVSPLVDQRSIFNFENPKIRFGDGHGQTM 368
Query: 369 FPANRISNLFQGVRTSSELNQLP 391
N NL GV T S + P
Sbjct: 369 ---NN-GNLLHGVPTGSHMRLRP 387
Score = 55 (24.4 bits), Expect = 2.2e-80, Sum P(2) = 2.2e-80
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 649 DDMMSGILKRDSNETILMDGELGFDAYSLSS 679
+D+MS LK++ ++ D E FD YS+ +
Sbjct: 633 EDLMSAFLKQEGIPSV--DNEFEFDGYSIDN 661
>TAIR|locus:2065398 [details] [associations]
symbol:RR14 "response regulator 14" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG0745 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AC006069
EMBL:AY099726 EMBL:AY128887 EMBL:AY088149 IPI:IPI00545640
PIR:G84428 RefSeq:NP_178285.1 UniGene:At.42470
ProteinModelPortal:Q8L9Y3 SMR:Q8L9Y3 IntAct:Q8L9Y3 STRING:Q8L9Y3
EnsemblPlants:AT2G01760.1 GeneID:814707 KEGG:ath:AT2G01760
GeneFarm:3930 TAIR:At2g01760 HOGENOM:HOG000034077 InParanoid:Q8L9Y3
OMA:SWILERS PhylomeDB:Q8L9Y3 ProtClustDB:CLSN2913129
Genevestigator:Q8L9Y3 GermOnline:AT2G01760 Uniprot:Q8L9Y3
Length = 382
Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
Identities = 157/356 (44%), Positives = 209/356 (58%)
Query: 18 DKFPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDV 77
D+FP G+R+L VDDD +CL +LE L Y+VT+ +QA AL +LRE +++FDLV+SDV
Sbjct: 5 DQFPSGLRILVVDDDTSCLFILEKMLLRLMYQVTICSQADVALTILRERKDSFDLVLSDV 64
Query: 78 HMPDMDGFKLLEHVGL-EMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIW 136
HMP M+G+ LL+ VGL EMDLPVIM+S G T VM GI HGACDYL+KP+R EELKNIW
Sbjct: 65 HMPGMNGYNLLQQVGLLEMDLPVIMMSVDGRTTTVMTGINHGACDYLIKPIRPEELKNIW 124
Query: 137 QHVIRRKKVGPKD-QNKLLNQENSRVGAGEGGQGAMSTGNSDQNGKSNRKRKXXXXXXXX 195
QHV+RRK V K+ ++ ++N G+ E ++S + + K K+K
Sbjct: 125 QHVVRRKCVMKKELRSSQALEDNKNSGSLETVVVSVSECSEESLMKCRNKKKKKKRSVDR 184
Query: 196 XXXXXXXXXXXSTTQKKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTREN 255
+ KK RVVW+ ELH++FV AVN+LG+DKAVPK+IL+LMNV GL+REN
Sbjct: 185 DDNEDDLLLDPGNS-KKSRVVWSIELHQQFVNAVNKLGIDKAVPKRILELMNVPGLSREN 243
Query: 256 VASHLQKFRLYLKRLSNETPQAGMVAALGSKDSSYLRIGALDGFGDLRS------LNSPG 309
VASHLQKFRLYLKRLS E Q+ Y I AL G L P
Sbjct: 244 VASHLQKFRLYLKRLSGEASQSND----SESTKRYENIQALVSSGQLHPQTLAALFGQPI 299
Query: 310 RLSSSAISSSYVPGNMFGRF-NSTSGLSMHGIASSGMIQPGHSQSFNTSFNTIGKI 364
SA ++P + GR N + + ++ + H S + +F G +
Sbjct: 300 DNHHSASFGVWIPNDNLGRSQNEHFSVDVSSASNRPVSVAVHGLSSSANFRQRGDV 355
>TAIR|locus:2008585 [details] [associations]
symbol:ARR11 "response regulator 11" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG0745 InterPro:IPR017053
PIRSF:PIRSF036392 EMBL:AJ005194 EMBL:AC008113 EMBL:BT008768
EMBL:AB041532 IPI:IPI00521272 PIR:C96700 PIR:T52034 PIR:T52074
RefSeq:NP_176938.1 UniGene:At.121 ProteinModelPortal:Q9FXD6
SMR:Q9FXD6 IntAct:Q9FXD6 STRING:Q9FXD6 EnsemblPlants:AT1G67710.1
GeneID:843096 KEGG:ath:AT1G67710 GeneFarm:3922 TAIR:At1g67710
HOGENOM:HOG000116485 InParanoid:Q9FXD6 OMA:WITRYDE PhylomeDB:Q9FXD6
ProtClustDB:CLSN2914476 Genevestigator:Q9FXD6 GermOnline:AT1G67710
Uniprot:Q9FXD6
Length = 521
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 148/293 (50%), Positives = 181/293 (61%)
Query: 21 PIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMP 80
P+G+RVL VDDDPT LK+LE L+ C YEVT A AL++LRE ++ +D+VISDV+MP
Sbjct: 8 PVGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLLRERKDGYDIVISDVNMP 67
Query: 81 DMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140
DMDGFKLLEHVGLE+DLPVIM+S G+T VMKG+ HGACDYLLKP+R++ELK IWQHV+
Sbjct: 68 DMDGFKLLEHVGLELDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQHVL 127
Query: 141 RRKKVGPKDQNKLLNQENSRVGAGEGGQGAMSTGNSDQNGKSNRKRKXXXXXXXXXXXXX 200
R+K +D E + G D + +KRK
Sbjct: 128 RKKLQEVRDIEGC-GYEGGADWITRYDEAHFLGGGEDVS--FGKKRKDFDFEKKLLQDES 184
Query: 201 XXXXXXSTTQKKPRVVWTPELHRKFVGAVNQLGVD-KAVPKKILDLMNVEGLTRENVASH 259
S++ KK RVVW+ ELH KFV AVNQ+G D KA PKKILDLMNV LTRENVASH
Sbjct: 185 DPS---SSSSKKARVVWSFELHHKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASH 241
Query: 260 LQKFRLYLKRLSNETPQAGMVAALGSKDSSYLRIGALDGFGDLRSLNSPGRLS 312
LQK+RLYL RL + + DSS + G+ SPGR S
Sbjct: 242 LQKYRLYLSRLEKGKELKCYSGGVKNADSSPKDVEVNSGY------QSPGRSS 288
>UNIPROTKB|Q7Y0W3 [details] [associations]
symbol:Q7Y0W3 "Two-component response regulator EHD1"
species:39946 "Oryza sativa Indica Group" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0048576 "positive regulation of short-day
photoperiodism, flowering" evidence=IMP] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
eggNOG:NOG265546 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB092508
ProteinModelPortal:Q7Y0W3 SMR:Q7Y0W3 KEGG:dosa:Os10t0463400-01
Gramene:Q7Y0W3 HOGENOM:HOG000084878 GO:GO:0048576 Uniprot:Q7Y0W3
Length = 341
Score = 303 (111.7 bits), Expect = 3.0e-45, Sum P(2) = 3.0e-45
Identities = 59/138 (42%), Positives = 86/138 (62%)
Query: 20 FPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHM 79
+P G+RVL +DDD + L V+E+ L C Y+VT A+ + +N DLVISD
Sbjct: 7 WPYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFF 66
Query: 80 PDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139
P DG +L+ V + +P +++++ GDT VMK + +GA D+LLKPVRIEEL NIWQH+
Sbjct: 67 PTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHI 126
Query: 140 IRRKKVGPKDQNKLLNQE 157
R++ K+ N + N E
Sbjct: 127 FRKQMQDHKNNNMVGNLE 144
Score = 205 (77.2 bits), Expect = 3.0e-45, Sum P(2) = 3.0e-45
Identities = 43/74 (58%), Positives = 53/74 (71%)
Query: 212 KPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFRLYLKRLS 271
K R+ WT +LHR+F+ AVN LG DKAVPKKIL +M V+ LTRE VASHLQK+R+ LK+
Sbjct: 198 KSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQKYRMQLKKSI 257
Query: 272 NETPQAGMVAALGS 285
T + G A L S
Sbjct: 258 PTTSKHG--ATLSS 269
>UNIPROTKB|Q7Y0W5 [details] [associations]
symbol:EHD1 "Two-component response regulator EHD1"
species:39947 "Oryza sativa Japonica Group" [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:DP000086 EMBL:CM000147 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
InterPro:IPR017053 PIRSF:PIRSF036392 GO:GO:0048576 EMBL:AB092506
EMBL:AB092507 EMBL:AC027038 ProteinModelPortal:Q7Y0W5
Gramene:Q7Y0W5 eggNOG:KOG1601 Uniprot:Q7Y0W5
Length = 341
Score = 303 (111.7 bits), Expect = 3.0e-45, Sum P(2) = 3.0e-45
Identities = 59/138 (42%), Positives = 86/138 (62%)
Query: 20 FPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHM 79
+P G+RVL +DDD + L V+E+ L C Y+VT A+ + +N DLVISD
Sbjct: 7 WPYGLRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFILDNPQIVDLVISDAFF 66
Query: 80 PDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139
P DG +L+ V + +P +++++ GDT VMK + +GA D+LLKPVRIEEL NIWQH+
Sbjct: 67 PTEDGLLILQEVTSKFGIPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHI 126
Query: 140 IRRKKVGPKDQNKLLNQE 157
R++ K+ N + N E
Sbjct: 127 FRKQMQDHKNNNMVGNLE 144
Score = 205 (77.2 bits), Expect = 3.0e-45, Sum P(2) = 3.0e-45
Identities = 43/74 (58%), Positives = 53/74 (71%)
Query: 212 KPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFRLYLKRLS 271
K R+ WT +LHR+F+ AVN LG DKAVPKKIL +M V+ LTRE VASHLQK+R+ LK+
Sbjct: 198 KSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQKYRMQLKKSI 257
Query: 272 NETPQAGMVAALGS 285
T + G A L S
Sbjct: 258 PTTSKHG--ATLSS 269
>TAIR|locus:2155954 [details] [associations]
symbol:APRR4 "pseudo-response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS]
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AB016872 IPI:IPI00535768 RefSeq:NP_199735.1
UniGene:At.55447 ProteinModelPortal:Q9FJ16 SMR:Q9FJ16
EnsemblPlants:AT5G49240.1 GeneID:834984 KEGG:ath:AT5G49240
GeneFarm:4344 TAIR:At5g49240 eggNOG:NOG265546 HOGENOM:HOG000029456
InParanoid:Q9FJ16 KO:K14491 OMA:SEIGSEM PhylomeDB:Q9FJ16
ProtClustDB:CLSN2916474 Genevestigator:Q9FJ16 GermOnline:AT5G49240
Uniprot:Q9FJ16
Length = 292
Score = 437 (158.9 bits), Expect = 4.9e-41, P = 4.9e-41
Identities = 95/249 (38%), Positives = 152/249 (61%)
Query: 20 FPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHM 79
FP G+RVL D+DP+ L +LE L+ QY+VT+ N+ A+ LR +RN FDL + V+
Sbjct: 38 FPEGLRVLVFDEDPSYLLILERHLQKFQYQVTICNEVNKAMHTLRNHRNRFDLAMIQVNN 97
Query: 80 PDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139
+ D F+ L +G EMDLP+I++S K V K + +GA DYL+KP+R E+L+ +++H+
Sbjct: 98 AEGDIFRFLSEIGSEMDLPIIIISEDDSVKSVKKWMINGAADYLIKPIRPEDLRIVFKHL 157
Query: 140 IRRKKVGPKDQNKLLNQENSRVGAGEGGQGAMSTGNSD-QNGKSNRKRKXXXXXXXXXXX 198
+ KK+ +++ ++ E + G+ + S G+S +N +++
Sbjct: 158 V--KKM--RERRSVVTGEAEKAA----GEKSSSVGDSTIRNPNKSKRSSCLEAEVNEEDR 209
Query: 199 XXXXXXXXSTTQKKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVAS 258
+++ KK RVVW ELH+ F+ AV+ LG+++AVPKKILD+M V+ ++RENVAS
Sbjct: 210 HDHNDRACASSAKKRRVVWDEELHQNFLNAVDFLGLERAVPKKILDVMKVDYISRENVAS 269
Query: 259 HLQ-KFRLY 266
HLQ F +Y
Sbjct: 270 HLQVTFLIY 278
>TAIR|locus:2141020 [details] [associations]
symbol:APRR2 species:3702 "Arabidopsis thaliana"
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA;ISS] [GO:0000160 "phosphorelay signal transduction
system" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=RCA;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
EMBL:AL161547 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AL021889
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AB041531
EMBL:AF385725 EMBL:AY143963 IPI:IPI00524902 IPI:IPI00542892
PIR:T05088 RefSeq:NP_001078405.1 RefSeq:NP_001154250.1
RefSeq:NP_001190759.1 RefSeq:NP_567548.1 RefSeq:NP_849403.1
RefSeq:NP_849404.2 UniGene:At.25394 ProteinModelPortal:Q6LA43
SMR:Q6LA43 IntAct:Q6LA43 STRING:Q6LA43 EnsemblPlants:AT4G18020.1
EnsemblPlants:AT4G18020.2 EnsemblPlants:AT4G18020.3
EnsemblPlants:AT4G18020.6 GeneID:827527 KEGG:ath:AT4G18020
GeneFarm:4314 TAIR:At4g18020 eggNOG:NOG268152 HOGENOM:HOG000005909
InParanoid:Q6LA43 OMA:TIMISTD PhylomeDB:Q6LA43
ProtClustDB:CLSN2689492 Genevestigator:Q6LA43 GermOnline:AT4G18020
Uniprot:Q6LA43
Length = 535
Score = 201 (75.8 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 41/63 (65%), Positives = 50/63 (79%)
Query: 208 TTQKKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFRLYL 267
T++KK V WTPELH+KFV AV QLGVD+A+P +IL+LM V LTR NVASHLQKFR +
Sbjct: 294 TSRKK--VDWTPELHKKFVQAVEQLGVDQAIPSRILELMKVGTLTRHNVASHLQKFRQHR 351
Query: 268 KRL 270
K +
Sbjct: 352 KNI 354
Score = 160 (61.4 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 44/132 (33%), Positives = 67/132 (50%)
Query: 18 DKFPIGMRVLAV------DDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFD 71
+ FP G++VL + D D + + L + Y VT AL + +N +F
Sbjct: 12 ENFPKGLKVLLLLNGCDSDGDGSSAAETRSELESMDYIVTTFTDETEALSAVVKNPESFH 71
Query: 72 LVISDVHMP-DMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIE 130
+ I +V+M + + FK LE + LP IM+S MK I GA ++L KP+ E
Sbjct: 72 IAIVEVNMSAESESFKFLE--AAKDVLPTIMISTDHCITTTMKCIALGAVEFLQKPLSPE 129
Query: 131 ELKNIWQHVIRR 142
+LKNIWQHV+ +
Sbjct: 130 KLKNIWQHVVHK 141
>TAIR|locus:2175364 [details] [associations]
symbol:AT5G05090 "AT5G05090" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002688
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AB005245 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY093188
EMBL:BT006289 IPI:IPI00523871 RefSeq:NP_196128.1 UniGene:At.33034
ProteinModelPortal:Q9FF65 SMR:Q9FF65 PRIDE:Q9FF65
EnsemblPlants:AT5G05090.1 GeneID:830391 KEGG:ath:AT5G05090
TAIR:At5g05090 InParanoid:Q9FF65 OMA:MREEDSN PhylomeDB:Q9FF65
ProtClustDB:CLSN2716677 ArrayExpress:Q9FF65 Genevestigator:Q9FF65
Uniprot:Q9FF65
Length = 266
Score = 237 (88.5 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 209 TQKKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFRLYLK 268
T K+PR+VWTP+LH++FV AV LG+ AVPK I+ LM+V+GLTRENVASHLQK+RLYLK
Sbjct: 78 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLK 137
Query: 269 RLSN 272
R+ +
Sbjct: 138 RMKS 141
Score = 44 (20.5 bits), Expect = 3.6e-21, Sum P(2) = 3.6e-21
Identities = 18/50 (36%), Positives = 23/50 (46%)
Query: 350 HSQSFNTSFNTIGKI-QQAMFPANRISNLFQGVRTSSELNQLPQSKSTTQ 398
H Q +F + K QAMF A + S L Q V S L+ Q + TQ
Sbjct: 199 HRQISAVNFTSPTKATDQAMFLARQQSELQQPVFKPSSLHLHSQVANYTQ 248
>TAIR|locus:2148348 [details] [associations]
symbol:BOA "AT5G59570" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0009909 "regulation of flower development" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
EMBL:CP002688 GO:GO:0003677 GO:GO:0007623 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AB025604
GO:GO:0009909 HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:BT026065 EMBL:AK117348
EMBL:AB206577 IPI:IPI00538187 RefSeq:NP_200765.1 UniGene:At.29219
ProteinModelPortal:Q9LTH4 SMR:Q9LTH4 STRING:Q9LTH4
EnsemblPlants:AT5G59570.1 GeneID:836076 KEGG:ath:AT5G59570
TAIR:At5g59570 InParanoid:Q9LTH4 OMA:ERSRTIH PhylomeDB:Q9LTH4
ProtClustDB:CLSN2685121 Genevestigator:Q9LTH4 Uniprot:Q9LTH4
Length = 298
Score = 250 (93.1 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 62/156 (39%), Positives = 82/156 (52%)
Query: 209 TQKKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFRLYLK 268
T K+PR+VWTP+LH++FV V LG+ AVPK I+ LMNVEGLTRENVASHLQK+RLYLK
Sbjct: 138 TSKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLK 197
Query: 269 RLSNETPQAGMVAALGSKDSS--YLRIGALDGFGDLRSLNSPGRLSSSAISSSYVPGNMF 326
R+ T + ++ SS DG G L P + S Y GN
Sbjct: 198 RIQGLTTEEDPYSSSDQLFSSTPVPPQSFQDGGGSNGKLGVPVPVPSMVPIPGY--GNQM 255
Query: 327 GRFNSTSGLSMHGIASSGMIQPGHSQSFNTSFNTIG 362
G S HG S+ + + ++ ++G
Sbjct: 256 GMQGYYQQYSNHGNESNQYMMQQNKFGTMVTYPSVG 291
>TAIR|locus:2058445 [details] [associations]
symbol:MYBC1 "AT2G40970" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009409 "response to cold" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0009409 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AC004261
HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC002409 EMBL:AY072381
EMBL:BT000098 IPI:IPI00539516 PIR:T00761 RefSeq:NP_181630.1
UniGene:At.27776 ProteinModelPortal:O22210 SMR:O22210
EnsemblPlants:AT2G40970.1 GeneID:818697 KEGG:ath:AT2G40970
TAIR:At2g40970 eggNOG:NOG255246 HOGENOM:HOG000238691
InParanoid:O22210 OMA:RYEDSEY PhylomeDB:O22210
ProtClustDB:CLSN2913178 ArrayExpress:O22210 Genevestigator:O22210
Uniprot:O22210
Length = 248
Score = 238 (88.8 bits), Expect = 4.2e-19, P = 4.2e-19
Identities = 43/62 (69%), Positives = 54/62 (87%)
Query: 209 TQKKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFRLYLK 268
T K+PR+VWTP+LH++FV AV LG+ AVPK I+ LM+VEGLTRENVASHLQK+RLYL+
Sbjct: 102 TLKRPRLVWTPQLHKRFVDAVGHLGIKNAVPKTIMQLMSVEGLTRENVASHLQKYRLYLR 161
Query: 269 RL 270
R+
Sbjct: 162 RM 163
>TAIR|locus:2103247 [details] [associations]
symbol:AT3G10760 "AT3G10760" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
EMBL:AC011708 Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 HOGENOM:HOG000238691 ProtClustDB:CLSN2716677
IPI:IPI00530545 RefSeq:NP_187687.1 UniGene:At.39869
ProteinModelPortal:Q9SG82 SMR:Q9SG82 PRIDE:Q9SG82
EnsemblPlants:AT3G10760.1 GeneID:820245 KEGG:ath:AT3G10760
TAIR:At3g10760 eggNOG:NOG312708 InParanoid:Q9SG82 OMA:FARWEEE
PhylomeDB:Q9SG82 Genevestigator:Q9SG82 Uniprot:Q9SG82
Length = 335
Score = 237 (88.5 bits), Expect = 7.1e-19, Sum P(2) = 7.1e-19
Identities = 44/70 (62%), Positives = 56/70 (80%)
Query: 209 TQKKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFRLYLK 268
T K+PR+VWTP+LH++FV AV LG+ AVPK I+ LM+V+GLTRENVASHLQK+RLYLK
Sbjct: 102 TLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLK 161
Query: 269 RLSNETPQAG 278
R+ + G
Sbjct: 162 RMQGLSSGGG 171
Score = 43 (20.2 bits), Expect = 7.1e-19, Sum P(2) = 7.1e-19
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 327 GRFNSTSGLSMHGI-ASSGMIQPGHSQSFNTSFNTIGKIQQAMFPANRIS 375
G F+S + G S+G P + F+ SF + + QQ P R+S
Sbjct: 253 GGFSSPTSNGQFGSPTSNGFGSPTTNGKFDPSFLAVRQTQQQ--PIQRMS 300
>TAIR|locus:2044376 [details] [associations]
symbol:PRR9 "pseudo-response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0010017 "red or far-red light signaling pathway" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034018
GO:GO:0010017 GO:GO:0009266 EMBL:AB046953 EMBL:AF272040
EMBL:AC005310 EMBL:AY099676 EMBL:AY128856 IPI:IPI00545462
PIR:T02680 RefSeq:NP_566085.1 UniGene:At.1675 UniGene:At.65052
ProteinModelPortal:Q8L500 SMR:Q8L500 STRING:Q8L500 PRIDE:Q8L500
EnsemblPlants:AT2G46790.1 GeneID:819292 KEGG:ath:AT2G46790
GeneFarm:4360 TAIR:At2g46790 eggNOG:COG0745 InParanoid:Q8L500
KO:K12128 OMA:HEACKNI PhylomeDB:Q8L500 ProtClustDB:CLSN2688972
Genevestigator:Q8L500 GermOnline:AT2G46790 Uniprot:Q8L500
Length = 468
Score = 250 (93.1 bits), Expect = 2.7e-18, P = 2.7e-18
Identities = 49/123 (39%), Positives = 80/123 (65%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
+RVL V+ D + +++ LR C Y+V + + A ++L+E +N DL+++++ +P +
Sbjct: 37 LRVLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVLKEKSHNIDLILTELDLPSIS 96
Query: 84 GFKLL----EHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139
GF LL EH + ++PVIM+S+ K+V+K + GA DYL+KP+R ELKN+WQHV
Sbjct: 97 GFALLALVMEHEACK-NIPVIMMSSQDSIKMVLKCMLRGAADYLIKPMRKNELKNLWQHV 155
Query: 140 IRR 142
RR
Sbjct: 156 WRR 158
>TAIR|locus:2199342 [details] [associations]
symbol:APRR6 "pseudo-response regulator 6" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AC016447 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557 KO:K14491
IPI:IPI00522591 IPI:IPI01020037 PIR:E96705 RefSeq:NP_176988.4
UniGene:At.52431 ProteinModelPortal:Q9C9F6 SMR:Q9C9F6 PaxDb:Q9C9F6
PRIDE:Q9C9F6 GeneID:843150 KEGG:ath:AT1G68210 GeneFarm:4346
TAIR:At1g68210 eggNOG:NOG320519 OMA:IANIEMP Genevestigator:Q9C9F6
Uniprot:Q9C9F6
Length = 755
Score = 168 (64.2 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 40/133 (30%), Positives = 69/133 (51%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L +D D + L + L+ V + A AL M+ + + L+I+++ MP +D
Sbjct: 15 ILLIDHDTASIASLTSMLQQFSKRVMSVDVASKALSMIEKQKKEIGLIIANIEMPHIDSH 74
Query: 86 KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKV 145
L + L+ D+P+I+++ TK +T AC L KP+ +++KN+WQHV +K
Sbjct: 75 SFLNALLLK-DIPLILINPEIKTKEPSDLLTKRACFSLDKPISNDDIKNMWQHVFSKKSQ 133
Query: 146 GPKDQNKLLNQEN 158
K N +QEN
Sbjct: 134 ELKKINITEDQEN 146
Score = 129 (50.5 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 216 VWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFRLYLKRLSNETP 275
+W E H KF+ A++ LG + PK IL++MN LT V SHLQK++ + ++S P
Sbjct: 226 LWNSERHMKFIAAISILGEEDFRPKSILEIMNDPNLTHRQVGSHLQKYKAQIDQISYTLP 285
Query: 276 Q 276
+
Sbjct: 286 R 286
>TAIR|locus:2151206 [details] [associations]
symbol:PRR7 "pseudo-response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0010017 "red or far-red light signaling
pathway" evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0009639 "response to red or far red light" evidence=RCA]
[GO:0042752 "regulation of circadian rhythm" evidence=RCA]
[GO:0048574 "long-day photoperiodism, flowering" evidence=RCA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005739
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892
GO:GO:0035556 GO:GO:0003677 GO:GO:0007623 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:AB046954
EMBL:AL162973 EMBL:AY039943 EMBL:AY142560 IPI:IPI00520937
PIR:T48302 RefSeq:NP_568107.1 UniGene:At.20552
ProteinModelPortal:Q93WK5 SMR:Q93WK5 STRING:Q93WK5 PRIDE:Q93WK5
EnsemblPlants:AT5G02810.1 GeneID:831793 KEGG:ath:AT5G02810
GeneFarm:4348 TAIR:At5g02810 eggNOG:COG3437 HOGENOM:HOG000034018
InParanoid:Q93WK5 KO:K12129 OMA:HDERNIL PhylomeDB:Q93WK5
ProtClustDB:CLSN2917538 Genevestigator:Q93WK5 GermOnline:AT5G02810
GO:GO:0010017 GO:GO:0009266 Uniprot:Q93WK5
Length = 727
Score = 232 (86.7 bits), Expect = 4.7e-17, Sum P(2) = 4.7e-17
Identities = 54/161 (33%), Positives = 88/161 (54%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
+RVL V++D ++ LR C YEV + + A K+L + N+ D+V+++V MP +
Sbjct: 78 IRVLLVENDDCTRYIVTALLRNCSYEVVEASNGIQAWKVLEDLNNHIDIVLTEVIMPYLS 137
Query: 84 GF----KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139
G K+L H ++PVIM+S++ LV K ++ GA D+L+KP+R ELK +WQHV
Sbjct: 138 GIGLLCKILNHKS-RRNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNELKILWQHV 196
Query: 140 IRR-KKVGPKDQNKLLNQENSRVGAGEGGQGAMSTGNSDQN 179
RR + +Q V + + +G+SD+N
Sbjct: 197 WRRCQSSSGSGSESGTHQTQKSVKSKSIKKSDQDSGSSDEN 237
Score = 59 (25.8 bits), Expect = 4.7e-17, Sum P(2) = 4.7e-17
Identities = 24/81 (29%), Positives = 37/81 (45%)
Query: 566 LEHKQGYNQNLNNPFSNVNTLLSGNCTMGPFSQSMDQSNSPYIAQLTGVEKAPLNTKLRS 625
L +G + NP SN N + GN +G S S+ +NS + + T +A +
Sbjct: 455 LRRSEGSAFSRYNPASNANKISGGN--LG--STSLQDNNSQDLIKKT---EAAYDCHSNM 507
Query: 626 NDDFLLEQSKSHDGFIQNNYD 646
N+ L +SH G NN+D
Sbjct: 508 NES-LPHNHRSHVG--SNNFD 525
Score = 37 (18.1 bits), Expect = 9.1e-15, Sum P(2) = 9.1e-15
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 571 GYNQNLNNPFSNVNTLLSGNCTMG 594
G N P+ + N + +G MG
Sbjct: 612 GSGHGSNGPYGSSNGMNAGGMNMG 635
>TAIR|locus:2163198 [details] [associations]
symbol:TOC1 "TIMING OF CAB EXPRESSION 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS;TAS] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010031 "circumnutation" evidence=IMP] [GO:0006351
"transcription, DNA-dependent" evidence=TAS] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0010629 "negative regulation of gene expression"
evidence=IDA] [GO:0009639 "response to red or far red light"
evidence=RCA] [GO:0042752 "regulation of circadian rhythm"
evidence=RCA] [GO:0048574 "long-day photoperiodism, flowering"
evidence=RCA] InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072
Pfam:PF06203 PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0006351
GO:GO:0010629 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AB041530 EMBL:AF272039 EMBL:AJ251086 EMBL:AB010073
EMBL:AY094393 EMBL:BT005816 IPI:IPI00517214 PIR:T52075 PIR:T52076
RefSeq:NP_200946.1 UniGene:At.21919 ProteinModelPortal:Q9LKL2
SMR:Q9LKL2 IntAct:Q9LKL2 STRING:Q9LKL2 EnsemblPlants:AT5G61380.1
GeneID:836259 KEGG:ath:AT5G61380 GeneFarm:4313 TAIR:At5g61380
eggNOG:NOG242953 HOGENOM:HOG000034017 InParanoid:Q9LKL2 KO:K12127
OMA:IPIIMMS PhylomeDB:Q9LKL2 ProtClustDB:CLSN2686914
Genevestigator:Q9LKL2 GermOnline:AT5G61380 GO:GO:0010031
Uniprot:Q9LKL2
Length = 618
Score = 238 (88.8 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 57/181 (31%), Positives = 99/181 (54%)
Query: 12 CEDGD--IDKFPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNN 69
C+ GD ID+ + R+L D+D T L + L C Y+VT A + L +
Sbjct: 7 CKGGDGFIDRSRV--RILLCDNDSTSLGEVFTLLSECSYQVTAVKSARQVIDALNAEGPD 64
Query: 70 FDLVISDVHMPDMDGFKLLEHVGLEMDL---PVIMLSAYGDTKLVMKGITHGACDYLLKP 126
D++++++ +P G K+L ++ + DL PVIM+S + +V+K + GA DYL+KP
Sbjct: 65 IDIILAEIDLPMAKGMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGAADYLVKP 124
Query: 127 VRIEELKNIWQHVIRRKKV-GPKDQNKLLNQENSRVGAGEGGQGAMSTG--NSDQNGKSN 183
+R EL N+W H+ RR+++ G ++N +L+ + VG+ + ST + D + +S
Sbjct: 125 LRTNELLNLWTHMWRRRRMLGLAEKN-MLSYDFDLVGSDQSDPNTNSTNLFSDDTDDRSL 183
Query: 184 R 184
R
Sbjct: 184 R 184
>TAIR|locus:2167639 [details] [associations]
symbol:GLK2 "AT5G44190" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=RCA;IMP;IDA] [GO:0009658 "chloroplast organization"
evidence=IMP] [GO:0009910 "negative regulation of flower
development" evidence=IGI] [GO:0010380 "regulation of chlorophyll
biosynthetic process" evidence=IGI] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0006417 "regulation of translation" evidence=RCA]
[GO:0009651 "response to salt stress" evidence=RCA] [GO:0009657
"plastid organization" evidence=RCA] [GO:0009737 "response to
abscisic acid stimulus" evidence=RCA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0009965 "leaf morphogenesis"
evidence=RCA] [GO:0010027 "thylakoid membrane organization"
evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0042793
"transcription from plastid promoter" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045893 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 EMBL:AB005239
GO:GO:0009658 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
PROSITE:PS51293 GO:GO:0009910 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
HOGENOM:HOG000237698 EMBL:AB062490 EMBL:AY026773 EMBL:AY028368
EMBL:AY050386 EMBL:AY124819 IPI:IPI00535889 RefSeq:NP_199232.1
UniGene:At.19638 ProteinModelPortal:Q9FFH0 SMR:Q9FFH0 STRING:Q9FFH0
EnsemblPlants:AT5G44190.1 GeneID:834442 KEGG:ath:AT5G44190
TAIR:At5g44190 eggNOG:NOG271712 InParanoid:Q9FFH0 OMA:QEMEGNT
PhylomeDB:Q9FFH0 ProtClustDB:CLSN2916711 Genevestigator:Q9FFH0
Uniprot:Q9FFH0
Length = 386
Score = 231 (86.4 bits), Expect = 1.7e-16, P = 1.7e-16
Identities = 44/61 (72%), Positives = 52/61 (85%)
Query: 210 QKKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFRLYLKR 269
+KKP+V WTPELHRKFV AV QLGVDKAVP +IL++MNV+ LTR NVASHLQK+R + K
Sbjct: 145 KKKPKVDWTPELHRKFVQAVEQLGVDKAVPSRILEIMNVKSLTRHNVASHLQKYRSHRKH 204
Query: 270 L 270
L
Sbjct: 205 L 205
>UNIPROTKB|Q5Z5I4 [details] [associations]
symbol:GLK1 "Probable transcription factor GLK1"
species:39947 "Oryza sativa Japonica Group" [GO:0010638 "positive
regulation of organelle organization" evidence=IGI] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=IGI]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
GO:GO:0045893 GO:GO:0003677 EMBL:AP008212 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 PROSITE:PS51293
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AP005688 EMBL:AK061946 EMBL:AK065184
EMBL:AK098909 EMBL:AK122161 RefSeq:NP_001057583.2 UniGene:Os.3340
ProteinModelPortal:Q5Z5I4 STRING:Q5Z5I4
EnsemblPlants:LOC_Os06g24070.1 GeneID:4340977 KEGG:osa:4340977
Gramene:Q5Z5I4 eggNOG:NOG283574 HOGENOM:HOG000237698 OMA:IDSLTRH
ProtClustDB:CLSN2696175 GO:GO:0010638 Uniprot:Q5Z5I4
Length = 455
Score = 218 (81.8 bits), Expect = 9.5e-15, P = 9.5e-15
Identities = 66/221 (29%), Positives = 108/221 (48%)
Query: 62 MLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACD 121
M ++ + FD + D+ D F LE + DL V + D + + T G
Sbjct: 29 MSSDDMDQFDFSVDDIDFGDF--FLRLEDGDVLPDLEVDPAEIFTDFEAIA---TSGG-- 81
Query: 122 YLLKPVRIEELKNIWQHVIRRKKVGPKDQ--NKLLNQENSR-VGAGEGGQGAMSTGNSDQ 178
+ V+ +E+ + + + VG D + ++ +EN+ GAGE G ++ +
Sbjct: 82 ---EGVQDQEVPTV-ELLAPADDVGVLDPCGDVVVGEENAAFAGAGEEKGGCNQDDDAGE 137
Query: 179 ----NGKSNRKRKXXXXXXXXXXXXXXXXXXXSTTQ-----KKPRVVWTPELHRKFVGAV 229
+G + + K S+++ KK +V WTPELHR+FV AV
Sbjct: 138 ANVDDGAAAVEAKSSSPSSTTSSSQEAESRHKSSSKSSHGKKKAKVDWTPELHRRFVQAV 197
Query: 230 NQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFRLYLKRL 270
QLG+DKAVP +IL++M ++ LTR N+ASHLQK+R + K +
Sbjct: 198 EQLGIDKAVPSRILEIMGIDSLTRHNIASHLQKYRSHRKHM 238
>TIGR_CMR|SPO_1679 [details] [associations]
symbol:SPO_1679 "DNA-binding response regulator CtrA"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 RefSeq:YP_166918.1
ProteinModelPortal:Q5LST7 GeneID:3194546 KEGG:sil:SPO1679
PATRIC:23376683 KO:K13584 OMA:PDMNGHE ProtClustDB:CLSK863578
Uniprot:Q5LST7
Length = 238
Score = 186 (70.5 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 42/122 (34%), Positives = 69/122 (56%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
MR+L V+DDPT K +E L V T+ + + + ++DL++ D+++PDM+
Sbjct: 1 MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDLAK--LYDYDLILLDINLPDMN 58
Query: 84 GFKLLEHVGLE-MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
G ++L + + ++ P+++LS DT+ +KG GA DYL KP EEL +IRR
Sbjct: 59 GHEVLRQLRMSRIETPILILSGVDDTESKIKGFGFGADDYLTKPFHREELVARIHAIIRR 118
Query: 143 KK 144
K
Sbjct: 119 SK 120
>TIGR_CMR|CHY_0606 [details] [associations]
symbol:CHY_0606 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_359462.1
ProteinModelPortal:Q3AEH2 STRING:Q3AEH2 GeneID:3728152
KEGG:chy:CHY_0606 PATRIC:21274355
BioCyc:CHYD246194:GJCN-606-MONOMER Uniprot:Q3AEH2
Length = 226
Score = 181 (68.8 bits), Expect = 5.7e-13, P = 5.7e-13
Identities = 45/129 (34%), Positives = 69/129 (53%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L V+DD K L + L+A Y+ A++ R NFDLVI D+++P DG
Sbjct: 3 KILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFY--RENFDLVILDLNLPKQDG 60
Query: 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144
F +L+ + D+PVI+L+A G+ + G T G DYL KP EL + V+RR +
Sbjct: 61 FSVLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYR 120
Query: 145 VGPKDQNKL 153
G ++ L
Sbjct: 121 KGRGEEEIL 129
>TIGR_CMR|BA_0577 [details] [associations]
symbol:BA_0577 "response regulator" species:198094
"Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR024187 Pfam:PF00072 PIRSF:PIRSF006171 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GO:GO:0003677 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0009605 GO:GO:0001071
HOGENOM:HOG000034816 RefSeq:NP_843111.2 RefSeq:YP_026824.1
ProteinModelPortal:Q81VC0 DNASU:1087932
EnsemblBacteria:EBBACT00000008382 EnsemblBacteria:EBBACT00000024391
GeneID:1087932 GeneID:2849175 KEGG:ban:BA_0577 KEGG:bat:BAS0546
PATRIC:18778756 KO:K11615 ProtClustDB:CLSK915867
BioCyc:BANT260799:GJAJ-606-MONOMER Uniprot:Q81VC0
Length = 235
Score = 179 (68.1 bits), Expect = 9.4e-13, P = 9.4e-13
Identities = 44/137 (32%), Positives = 74/137 (54%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQ-YE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPD 81
++VL V+DDP + ++L +E V N +A+++L E+R DLV+ D+ MP+
Sbjct: 2 IKVLIVEDDPMVAMLNTHYLEQVGGFELVQAVNSIKSAIEVLEESR--IDLVLLDIFMPE 59
Query: 82 MDGFKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140
GF+LL ++ E ++ ++M+SA D + K + +G DYL+KP E K +
Sbjct: 60 ETGFELLMYIRNQEKEIDIMMISAVHDMGSIKKALQYGVVDYLIKPFTFERFKEALT-IY 118
Query: 141 RRKKVGPKDQNKLLNQE 157
R K K+Q K+ E
Sbjct: 119 REKLTFMKEQQKISQSE 135
>UNIPROTKB|Q4GZK8 [details] [associations]
symbol:rr3 "Type A response regulator 3" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000127 EMBL:AJ938072
STRING:Q4GZK8 Uniprot:Q4GZK8
Length = 131
Score = 174 (66.3 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 41/120 (34%), Positives = 69/120 (57%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
VLAVDD V+ LR+ +Y VT + AL++L +RN ++I+D MP+M GF
Sbjct: 13 VLAVDDSIVDRTVISRLLRSSKYRVTTVDSGKRALEVLSLDRN-VHMIITDYCMPEMTGF 71
Query: 86 KLLEHV--GLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
LL+ V E+ ++PV+++S+ + + + GA D+L+KPVR ++ + VI +
Sbjct: 72 DLLKRVKESAELKEIPVVLMSSENSPTRIRRCLEEGAEDFLIKPVRPSDVSRLCNRVIMK 131
>TIGR_CMR|BA_1955 [details] [associations]
symbol:BA_1955 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 HSSP:P08402 RefSeq:NP_844363.1
RefSeq:YP_018600.2 ProteinModelPortal:Q81RT3 DNASU:1085997
EnsemblBacteria:EBBACT00000011147 EnsemblBacteria:EBBACT00000016377
GeneID:1085997 GeneID:2817674 KEGG:ban:BA_1955 KEGG:bar:GBAA_1955
PATRIC:18781506 OMA:FLECEGF ProtClustDB:CLSK916430
BioCyc:BANT261594:GJ7F-1959-MONOMER Uniprot:Q81RT3
Length = 228
Score = 172 (65.6 bits), Expect = 5.3e-12, P = 5.3e-12
Identities = 51/149 (34%), Positives = 81/149 (54%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRE-NRNNFDLVISDVHMPDMDG 84
+L VDDDP +++ FL C E T +A+ L L++ N+ D+VI D+ MP+MDG
Sbjct: 8 ILIVDDDPHIRELVSVFLE-C--EGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMDG 64
Query: 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP-------VRIEELKNIWQ 137
F + + D+P+++L+A G+T +KG G DYL+KP VR++ L +Q
Sbjct: 65 FDVCFELRKYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQ 124
Query: 138 HVIRRK-KVGPKDQNKLLNQENSRVGAGE 165
+ + +VG LLN++ V GE
Sbjct: 125 ITVSQSIQVG----TVLLNRKTFEVTIGE 149
>TIGR_CMR|BA_0585 [details] [associations]
symbol:BA_0585 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_843119.1
RefSeq:YP_017209.1 RefSeq:YP_026832.1 ProteinModelPortal:Q81VB2
DNASU:1087912 EnsemblBacteria:EBBACT00000008912
EnsemblBacteria:EBBACT00000015521 EnsemblBacteria:EBBACT00000021979
GeneID:1087912 GeneID:2818661 GeneID:2851974 KEGG:ban:BA_0585
KEGG:bar:GBAA_0585 KEGG:bat:BAS0554 OMA:YQTDIEY
ProtClustDB:CLSK2305400 BioCyc:BANT260799:GJAJ-614-MONOMER
BioCyc:BANT261594:GJ7F-640-MONOMER Uniprot:Q81VB2
Length = 223
Score = 170 (64.9 bits), Expect = 8.7e-12, P = 8.7e-12
Identities = 39/121 (32%), Positives = 68/121 (56%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
+++L VDD+ L++L+ FL Y + ALK++ + +FD+++ DV MP+MD
Sbjct: 2 VKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQK--DFDIILLDVMMPNMD 59
Query: 84 GFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143
G+ + ++P+IML+A ++KG+T GA DY+ KP L + ++RR
Sbjct: 60 GWDTCYQIRQISNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRRT 119
Query: 144 K 144
K
Sbjct: 120 K 120
>TIGR_CMR|BA_3900 [details] [associations]
symbol:BA_3900 "lantibiotic biosynthesis DNA-binding
response regulator, putative" species:198094 "Bacillus anthracis
str. Ames" [GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0017000 "antibiotic biosynthetic process" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:Q9WYN0 RefSeq:NP_846147.1
RefSeq:YP_020538.1 RefSeq:YP_029866.1 ProteinModelPortal:Q81WR8
DNASU:1087972 EnsemblBacteria:EBBACT00000012233
EnsemblBacteria:EBBACT00000017950 EnsemblBacteria:EBBACT00000020089
GeneID:1087972 GeneID:2814840 GeneID:2849516 KEGG:ban:BA_3900
KEGG:bar:GBAA_3900 KEGG:bat:BAS3613 OMA:TAIVEHI
ProtClustDB:CLSK907876 BioCyc:BANT260799:GJAJ-3672-MONOMER
BioCyc:BANT261594:GJ7F-3789-MONOMER Uniprot:Q81WR8
Length = 220
Score = 168 (64.2 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 40/121 (33%), Positives = 70/121 (57%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
R+LA+DD+ L ++++ L +EVT + +T K E ++DL++ DV MP++DG
Sbjct: 3 RILAIDDEDGILYIIKSALEKEGHEVTAVSNPLTIPK---EKFCHYDLILLDVMMPEIDG 59
Query: 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELK-NIWQHVIRRK 143
F L + + +D P++ L+A K ++ G++ G DY+ KP I EL+ + HV R
Sbjct: 60 FTLCKEIRDFVDSPIVFLTAKTMEKDLITGLSLGGDDYITKPFGIGELRARVSAHVRREH 119
Query: 144 K 144
+
Sbjct: 120 R 120
>UNIPROTKB|P0A5Z4 [details] [associations]
symbol:mtrA "DNA-binding response regulator MtrA"
species:1773 "Mycobacterium tuberculosis" [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0006468 "protein phosphorylation"
evidence=IDA] [GO:0044117 "growth of symbiont in host"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0045893 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0006468 GO:GO:0044117 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 EMBL:BX842582
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 EMBL:U01971 PIR:H70592 RefSeq:NP_217763.1
RefSeq:NP_337872.1 RefSeq:YP_006516722.1 PDB:2GWR PDB:3NHZ
PDBsum:2GWR PDBsum:3NHZ ProteinModelPortal:P0A5Z4 SMR:P0A5Z4
EnsemblBacteria:EBMYCT00000000173 EnsemblBacteria:EBMYCT00000070796
GeneID:13318068 GeneID:888743 GeneID:923067 KEGG:mtc:MT3344
KEGG:mtu:Rv3246c KEGG:mtv:RVBD_3246c PATRIC:18129108
TubercuList:Rv3246c KO:K07670 OMA:GFEPSFV ProtClustDB:CLSK872159
EvolutionaryTrace:P0A5Z4 Uniprot:P0A5Z4
Length = 228
Score = 166 (63.5 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 42/133 (31%), Positives = 71/133 (53%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
R+L VDDD + ++L LR ++ V AL +RE R DLV+ D+ +P M+G
Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRP--DLVLLDLMLPGMNG 64
Query: 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144
+ + + +P++ML+A DT V+ G+ GA DY++KP + +EL + +RR
Sbjct: 65 IDVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRND 124
Query: 145 VGPKDQNKLLNQE 157
P + + + E
Sbjct: 125 DEPAEMLSIADVE 137
>UNIPROTKB|O53894 [details] [associations]
symbol:mprA "Response regulator MprA" species:1773
"Mycobacterium tuberculosis" [GO:0000160 "phosphorelay signal
transduction system" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0006950 "response
to stress" evidence=IEP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0090034 "regulation of chaperone-mediated protein complex
assembly" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0005737 GO:GO:0005618
GO:GO:0045892 GO:GO:0045893 GO:GO:0009405 GO:GO:0006950
EMBL:BX842575 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000160 eggNOG:COG0745
HOGENOM:HOG000034815 GO:GO:0090034 PIR:A70821 RefSeq:NP_215496.1
RefSeq:NP_335443.1 RefSeq:YP_006514341.1 HSSP:P0A5Z6
ProteinModelPortal:O53894 SMR:O53894 PRIDE:O53894
EnsemblBacteria:EBMYCT00000001458 EnsemblBacteria:EBMYCT00000070763
GeneID:13319541 GeneID:885038 GeneID:925187 KEGG:mtc:MT1009
KEGG:mtu:Rv0981 KEGG:mtv:RVBD_0981 PATRIC:18123964
TubercuList:Rv0981 KO:K07669 OMA:MLMANPR ProtClustDB:CLSK790869
Uniprot:O53894
Length = 230
Score = 167 (63.8 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 44/129 (34%), Positives = 69/129 (53%)
Query: 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPD 81
+ +R+L VDDD + L L Y V + + V AL M+ +R D ++ DV MP
Sbjct: 1 MSVRILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRP--DALVLDVMMPR 58
Query: 82 MDGFKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140
+DG ++ + G DLP+++L+A + G+ GA DYL KP +EEL + ++
Sbjct: 59 LDGLEVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALL 118
Query: 141 RRKKVGPKD 149
RR K P+D
Sbjct: 119 RRTK--PED 125
>UNIPROTKB|Q4GZK5 [details] [associations]
symbol:rr6 "Type A response regulator 6" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AJ938075 ProteinModelPortal:Q4GZK5 KEGG:dosa:Os04t0673300-01
Gramene:Q4GZK5 Uniprot:Q4GZK5
Length = 170
Score = 162 (62.1 bits), Expect = 6.3e-11, P = 6.3e-11
Identities = 39/120 (32%), Positives = 67/120 (55%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENR-NNFDLVISDVHMPDM 82
M VLAVDD V+ LR+ +Y VT A AL++L N +++I+D MP M
Sbjct: 50 MHVLAVDDSSVDRAVIAKILRSSKYRVTTVESATRALELLCLGLVPNVNMIITDYWMPGM 109
Query: 83 DGFKLLEHV--GLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139
G++LL+ V ++ ++PV+++S+ + + + GA D+LLKPVR ++ + +
Sbjct: 110 TGYELLKRVKESSQLKEIPVVIMSSENVPNRISRCLEEGAEDFLLKPVRPSDVSRLCSRI 169
>UNIPROTKB|P0A5Z6 [details] [associations]
symbol:prrA "Transcriptional regulatory protein PrrA"
species:1773 "Mycobacterium tuberculosis" [GO:0000287 "magnesium
ion binding" evidence=IDA] [GO:0005509 "calcium ion binding"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0044110 "growth involved in
symbiotic interaction" evidence=IDA] [GO:0052572 "response to host
immune response" evidence=IEP] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005829 GO:GO:0005886
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0000287 GO:GO:0003677
GO:GO:0005509 GO:GO:0052572 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 EMBL:BX842574 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815 PIR:D70783
RefSeq:NP_215418.1 RefSeq:NP_335359.1 RefSeq:YP_006514256.1
PDB:1YS6 PDB:1YS7 PDBsum:1YS6 PDBsum:1YS7 ProteinModelPortal:P0A5Z6
SMR:P0A5Z6 DIP:DIP-29035N PhosSite:P12061589
EnsemblBacteria:EBMYCT00000002159 EnsemblBacteria:EBMYCT00000072508
GeneID:13318807 GeneID:885209 GeneID:926241 KEGG:mtc:MT0926
KEGG:mtu:Rv0903c KEGG:mtv:RVBD_0903c PATRIC:18123784
TubercuList:Rv0903c KO:K07671 OMA:VDDRISG ProtClustDB:CLSK790822
EvolutionaryTrace:P0A5Z6 GO:GO:0044110 Uniprot:P0A5Z6
Length = 233
Score = 168 (64.2 bits), Expect = 7.1e-11, P = 7.1e-11
Identities = 43/120 (35%), Positives = 65/120 (54%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
RVL VDDD L LE LR +EV AL+ ENR D ++ D++MP +DG
Sbjct: 9 RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRP--DAIVLDINMPVLDG 66
Query: 85 FKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143
++ + ++ D+PV +LSA + G+ GA DYL+KP + EL + ++RR+
Sbjct: 67 VSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 126
>TAIR|locus:2119425 [details] [associations]
symbol:UNE16 "unfertilized embryo sac 16" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0009567 "double fertilization forming a
zygote and endosperm" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 EMBL:CP002687 GO:GO:0003677
GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0009567
IPI:IPI00657591 RefSeq:NP_001031626.1 UniGene:At.22199
ProteinModelPortal:F4JTR5 SMR:F4JTR5 PRIDE:F4JTR5
EnsemblPlants:AT4G13640.2 GeneID:826998 KEGG:ath:AT4G13640
OMA:LPIDACL PhylomeDB:F4JTR5 Uniprot:F4JTR5
Length = 295
Score = 177 (67.4 bits), Expect = 8.5e-11, P = 8.5e-11
Identities = 45/95 (47%), Positives = 55/95 (57%)
Query: 208 TTQKKPRVVWTPELHRKFVGAVNQLG-VDKAVPKKILDLMNVEGLTRENVASHLQKFRL- 265
TT KPR+ WT ELH +FV AV QLG DKA PK I+ M V+GLT ++ SHLQKFRL
Sbjct: 33 TTDPKPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRLG 92
Query: 266 --YLKRLSNETPQAGMVAA---LGSKDSSYLRIGA 295
K + + VA GS +S LR+ A
Sbjct: 93 RQSCKESIDNSKDVSCVAESQDTGSSSTSSLRLAA 127
>UNIPROTKB|P14375 [details] [associations]
symbol:zraR species:83333 "Escherichia coli K-12"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;IGI;IEP;ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IDA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA;IDA] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0005737 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:U00006 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
HOGENOM:HOG000058487 EMBL:M28369 PIR:G65207 RefSeq:NP_418432.1
RefSeq:YP_491456.1 ProteinModelPortal:P14375 SMR:P14375
DIP:DIP-9980N PRIDE:P14375 EnsemblBacteria:EBESCT00000003356
EnsemblBacteria:EBESCT00000015912 GeneID:12933469 GeneID:948505
KEGG:ecj:Y75_p3192 KEGG:eco:b4004 PATRIC:32123533 EchoBASE:EB0477
EcoGene:EG10482 KO:K07713 OMA:AEVNAGH ProtClustDB:PRK10365
BioCyc:EcoCyc:HYDG-MONOMER BioCyc:ECOL316407:JW3968-MONOMER
Genevestigator:P14375 Uniprot:P14375
Length = 441
Score = 182 (69.1 bits), Expect = 8.7e-11, P = 8.7e-11
Identities = 39/109 (35%), Positives = 63/109 (57%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L VDDD + +L+ LR Y V + N AL+ +RE FDLV+ DV M +MDG
Sbjct: 8 ILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQV--FDLVLCDVRMAEMDGI 65
Query: 86 KLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELK 133
L+ + L +PV++++AY + ++ + GA DYL+KP+ + L+
Sbjct: 66 ATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQ 114
>TIGR_CMR|GSU_0008 [details] [associations]
symbol:GSU_0008 "sensory box histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112 SMART:SM00091
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
InterPro:IPR001610 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 InterPro:IPR013656 Pfam:PF08448
HSSP:P06143 RefSeq:NP_951070.1 ProteinModelPortal:Q74H84
GeneID:2688683 KEGG:gsu:GSU0008 PATRIC:22022753
HOGENOM:HOG000135130 OMA:HRFEAGR ProtClustDB:CLSK924354
BioCyc:GSUL243231:GH27-8-MONOMER Uniprot:Q74H84
Length = 516
Score = 183 (69.5 bits), Expect = 9.3e-11, P = 9.3e-11
Identities = 44/144 (30%), Positives = 77/144 (53%)
Query: 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
G +V VDD+ +L+ L Y + AL L R +FDLV+ D+ MP M
Sbjct: 3 GYKVFIVDDEADIALILKLQLEDAGYRTMRARDGIEALDALE--RESFDLVLLDIRMPRM 60
Query: 83 DGFKLLEHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141
DG ++LE + DL VIM++A+G + ++ + GA DY+ KP +++K + I+
Sbjct: 61 DGIEVLERIRDRWPDLVVIMMTAHGSEDIAVEAMKKGAVDYISKPFSSDDMKKRVERAIQ 120
Query: 142 --RKKVGPKDQNKLLNQENSRVGA 163
R ++ + ++L++E ++GA
Sbjct: 121 FNRTRLENERLQRVLDEERRKMGA 144
>TIGR_CMR|SO_0622 [details] [associations]
symbol:SO_0622 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
HOGENOM:HOG000034815 HSSP:Q9WYN0 RefSeq:NP_716255.1
ProteinModelPortal:Q8EJ51 GeneID:1168488 KEGG:son:SO_0622
PATRIC:23520932 OMA:PFHTQEL ProtClustDB:CLSK905847 Uniprot:Q8EJ51
Length = 224
Score = 163 (62.4 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 45/133 (33%), Positives = 73/133 (54%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
M++L V+D+P + LE L+ Y +T++A+ A +++E + +D VI D+ +PD +
Sbjct: 1 MKLLLVEDNPMLVSELEKQLKQAGYVTDITDKALEADYLVKETQ--YDCVILDIGLPDGN 58
Query: 84 GFKLLEHVGLE-MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
G +LLE + + PVIML+A ++G GA DYL KP +EL Q +I R
Sbjct: 59 GLELLEGWRNQGISTPVIMLTARSQWHEKVEGFNAGADDYLGKPFHAQELLARIQALIHR 118
Query: 143 KKVGPKDQNKLLN 155
+ NK L+
Sbjct: 119 AHGRLNNPNKQLS 131
>TIGR_CMR|GSU_2693 [details] [associations]
symbol:GSU_2693 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_953738.1 ProteinModelPortal:Q749P9 GeneID:2687548
KEGG:gsu:GSU2693 PATRIC:22028241 OMA:VEMHRAR
BioCyc:GSUL243231:GH27-2669-MONOMER Uniprot:Q749P9
Length = 128
Score = 158 (60.7 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 44/121 (36%), Positives = 63/121 (52%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
+ VL VDDD L VL L + EVT ++ A+ ++R + FD+VI+D MP M+
Sbjct: 4 INVLIVDDDVNFLYVLGLLLESKDLEVTSASRGAEAVDIVR--KTTFDMVITDFSMPGMN 61
Query: 84 GFKLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
G +L V L DLPV+M++ + L+ G C L KPV + L +H RR
Sbjct: 62 GLELAAAVKELHPDLPVMMVTCEVTSDLIEMATDVGICRVLDKPVNVGRLLADIRHFSRR 121
Query: 143 K 143
K
Sbjct: 122 K 122
>TIGR_CMR|GSU_1989 [details] [associations]
symbol:GSU_1989 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00688 RefSeq:NP_953038.1 ProteinModelPortal:Q74BQ2
GeneID:2686140 KEGG:gsu:GSU1989 PATRIC:22026841 OMA:IARSLHY
ProtClustDB:CLSK743130 BioCyc:GSUL243231:GH27-2007-MONOMER
Uniprot:Q74BQ2
Length = 444
Score = 179 (68.1 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 47/142 (33%), Positives = 73/142 (51%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
VL VDD+P +VL L + V + A A +L+ + D +I+D+ MP DG
Sbjct: 5 VLIVDDEPNAARVLSAILAGEGHTVLTASDASKAEHILKSR--DVDAIITDLRMPGRDGM 62
Query: 86 KLLEHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144
+L EHV + D+PVI L+AYG + IT GA Y +KP +LK++ + ++
Sbjct: 63 QLFEHVTEHLPDIPVIFLTAYGTVDSAVNAITRGAFYYFIKPPDYVKLKSMVARAVEQRA 122
Query: 145 VGPKDQNKLLNQENSRVGAGEG 166
+ ++ +L RV AG G
Sbjct: 123 L-KREVAEL----RKRVAAGSG 139
>UNIPROTKB|A5U0E5 [details] [associations]
symbol:phoP "Putative two component system response
transcriptional positive regulator PhoP" species:419947
"Mycobacterium tuberculosis H37Ra" [GO:0042802 "identical protein
binding" evidence=IPI] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745 EMBL:CP000611
GenomeReviews:CP000611_GR HOGENOM:HOG000034815 KO:K02483
RefSeq:YP_001282057.1 ProteinModelPortal:A5U0E5 SMR:A5U0E5
STRING:A5U0E5 PRIDE:A5U0E5 EnsemblBacteria:EBMYCT00000067475
GeneID:5215306 KEGG:mra:MRA_0767 PATRIC:18141256 OMA:KPRILDH
ProtClustDB:CLSK790716 BioCyc:MTUB419947:GJ8N-786-MONOMER
Uniprot:A5U0E5
Length = 247
Score = 169 (64.5 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 48/127 (37%), Positives = 70/127 (55%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEV-TVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
RVL VDD+ +++L L+ +EV T TN A AL RE R D VI DV MP MD
Sbjct: 22 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGA-QALDRARETRP--DAVILDVMMPGMD 78
Query: 84 GFKLLEHVGLE-MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
GF +L + + +D P + L+A + + G+T G DY+ KP +EE+ + ++RR
Sbjct: 79 GFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 138
Query: 143 KKVGPKD 149
G K+
Sbjct: 139 AGKGNKE 145
>UNIPROTKB|P71814 [details] [associations]
symbol:phoP "Possible two component system response
transcriptional positive regulator PhoP" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0006979 "response to oxidative stress"
evidence=IMP] [GO:0009247 "glycolipid biosynthetic process"
evidence=IMP] [GO:0009405 "pathogenesis" evidence=IMP] [GO:0044315
"protein secretion by the type VII secretion system" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0045892 GO:GO:0045893
GO:GO:0009405 GO:GO:0006979 GenomeReviews:AL123456_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0009247 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:BX842574 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 GO:GO:0044315 KO:K02483
OMA:KPRILDH ProtClustDB:CLSK790716 EMBL:AL123456 PIR:H70705
RefSeq:NP_215271.1 RefSeq:YP_006514104.1 PDB:3R0J PDBsum:3R0J
ProteinModelPortal:P71814 SMR:P71814
EnsemblBacteria:EBMYCT00000002360 GeneID:13318651 GeneID:888772
KEGG:mtu:Rv0757 KEGG:mtv:RVBD_0757 PATRIC:18150200
TubercuList:Rv0757 Uniprot:P71814
Length = 247
Score = 169 (64.5 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 48/127 (37%), Positives = 70/127 (55%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEV-TVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
RVL VDD+ +++L L+ +EV T TN A AL RE R D VI DV MP MD
Sbjct: 22 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGA-QALDRARETRP--DAVILDVMMPGMD 78
Query: 84 GFKLLEHVGLE-MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
GF +L + + +D P + L+A + + G+T G DY+ KP +EE+ + ++RR
Sbjct: 79 GFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 138
Query: 143 KKVGPKD 149
G K+
Sbjct: 139 AGKGNKE 145
>TAIR|locus:2093726 [details] [associations]
symbol:AT3G24120 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0009086 "methionine
biosynthetic process" evidence=RCA] [GO:0010048 "vernalization
response" evidence=RCA] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002686 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00531757
RefSeq:NP_974356.1 UniGene:At.26588 ProteinModelPortal:F4J5D9
SMR:F4J5D9 EnsemblPlants:AT3G24120.2 GeneID:821998
KEGG:ath:AT3G24120 OMA:NLPGDAC PhylomeDB:F4J5D9 Uniprot:F4J5D9
Length = 298
Score = 174 (66.3 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 44/83 (53%), Positives = 52/83 (62%)
Query: 208 TTQKKPRVVWTPELHRKFVGAVNQLG-VDKAVPKKILDLMNVEGLTRENVASHLQKFRLY 266
TT KPR+ WT ELH +FV AV QLG DKA PK I+ M V+GLT ++ SHLQKFRL
Sbjct: 37 TTDPKPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKFRL- 95
Query: 267 LKRLSNETPQAGMVAALGSKDSS 289
R QAG + SKD+S
Sbjct: 96 -GR------QAGKESTENSKDAS 111
>TAIR|locus:2095933 [details] [associations]
symbol:MYR2 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 HSSP:O49397 HOGENOM:HOG000239390 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC011698
ProtClustDB:CLSN2686543 IPI:IPI00524229 RefSeq:NP_001118567.1
UniGene:At.40915 ProteinModelPortal:Q9SQQ9 SMR:Q9SQQ9
EnsemblPlants:AT3G04030.3 GeneID:819558 KEGG:ath:AT3G04030
TAIR:At3g04030 InParanoid:Q9SQQ9 OMA:HITSERH PhylomeDB:Q9SQQ9
Genevestigator:Q9SQQ9 Uniprot:Q9SQQ9
Length = 394
Score = 177 (67.4 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 35/67 (52%), Positives = 48/67 (71%)
Query: 208 TTQKKPRVVWTPELHRKFVGAVNQLG-VDKAVPKKILDLMNVEGLTRENVASHLQKFRLY 266
+T KPR+ WTP+LH +F+ AVNQLG DKA PK I+ +M + GLT ++ SHLQK+RL
Sbjct: 41 STDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRLS 100
Query: 267 LKRLSNE 273
K L+ +
Sbjct: 101 -KNLNGQ 106
>TIGR_CMR|DET_0232 [details] [associations]
symbol:DET_0232 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_180980.1 ProteinModelPortal:Q3Z9W9 STRING:Q3Z9W9
GeneID:3230435 KEGG:det:DET0232 PATRIC:21607535 OMA:SIRELWI
ProtClustDB:CLSK741610 BioCyc:DETH243164:GJNF-232-MONOMER
Uniprot:Q3Z9W9
Length = 227
Score = 163 (62.4 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 37/128 (28%), Positives = 74/128 (57%)
Query: 24 MRVLAVDDDPTCLKVLENFLR-ACQYEVTVTNQAVTALKMLRENRN-NFDLVISDVHMPD 81
M++L ++DD + V+ + +C ++ A + K + + N D+++ D+ +PD
Sbjct: 1 MKLLLIEDDAEIVDVISTIFQISCPNSRVIS--ASSGRKGIESVESVNPDIILLDLGLPD 58
Query: 82 MDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141
M+GF +L+ + D+P+I+L+ GD V++G+T GA DY+ KP R EL + ++
Sbjct: 59 MNGFDVLKQIRNFSDVPIIILTVRGDESDVVRGLTLGANDYITKPFRQMELLARVRRLLT 118
Query: 142 RKKVGPKD 149
+K++ +D
Sbjct: 119 KKQINGED 126
>TAIR|locus:2085984 [details] [associations]
symbol:AT3G25790 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
EMBL:AB028607 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
HOGENOM:HOG000237574 ProtClustDB:CLSN2687791 IPI:IPI00546166
RefSeq:NP_566778.1 UniGene:At.37325 ProteinModelPortal:Q9LS00
SMR:Q9LS00 EnsemblPlants:AT3G25790.1 GeneID:822170
KEGG:ath:AT3G25790 TAIR:At3g25790 InParanoid:Q9LS00 OMA:AYKREIS
PhylomeDB:Q9LS00 Genevestigator:Q9LS00 Uniprot:Q9LS00
Length = 357
Score = 175 (66.7 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 35/67 (52%), Positives = 47/67 (70%)
Query: 210 QKKPRVVWTPELHRKFVGAVNQLGVDK-AVPKKILDLMNVEGLTRENVASHLQKFRLYLK 268
Q+K R W+ ELHR+F+ A+ QLG A PK+I D+M V+GLT + V SHLQK+RL+ +
Sbjct: 194 QRKNRRCWSQELHRRFLNALKQLGGPHVATPKQIRDIMKVDGLTNDEVKSHLQKYRLHAR 253
Query: 269 RLSNETP 275
R S TP
Sbjct: 254 RPSQTTP 260
>TIGR_CMR|DET_1540 [details] [associations]
symbol:DET_1540 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 RefSeq:YP_182238.1 ProteinModelPortal:Q3Z6B1
GeneID:3229185 KEGG:det:DET1540 PATRIC:21610100 OMA:ARIRCIL
ProtClustDB:CLSK741608 BioCyc:DETH243164:GJNF-1541-MONOMER
Uniprot:Q3Z6B1
Length = 225
Score = 162 (62.1 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 40/128 (31%), Positives = 73/128 (57%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTV--TNQAVTALKMLRENRNNFDLVISDVHMPD 81
M++L ++DD ++ + L+ +VT+ ++ + L+M+ E R N LVI D+ +PD
Sbjct: 1 MKILIIEDDYKIVQAISFALKIGWPDVTLLSASRGESGLRMIEEQRPN--LVILDLSLPD 58
Query: 82 MDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141
MDG ++L+ L D P+I+L+ + V++ + GA +Y++KP R EL + ++R
Sbjct: 59 MDGLEVLKDARLFCDTPIIILTVRSEESDVVEALELGANEYIIKPFRQMELLARIRCILR 118
Query: 142 RKKVGPKD 149
R KD
Sbjct: 119 RPITTSKD 126
>TAIR|locus:2206415 [details] [associations]
symbol:APL "ALTERED PHLOEM DEVELOPMENT" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0010088 "phloem development"
evidence=IMP] [GO:0010089 "xylem development" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0010089 EMBL:AC007202 EMBL:AY045662 EMBL:AY143841
EMBL:AK316719 IPI:IPI00538563 IPI:IPI00542908 PIR:D96825
RefSeq:NP_565209.1 RefSeq:NP_849905.1 UniGene:At.23550 HSSP:O49397
ProteinModelPortal:Q9SAK5 SMR:Q9SAK5 IntAct:Q9SAK5 STRING:Q9SAK5
PRIDE:Q9SAK5 EnsemblPlants:AT1G79430.2 GeneID:844281
KEGG:ath:AT1G79430 TAIR:At1g79430 eggNOG:NOG261203
HOGENOM:HOG000239390 InParanoid:Q94AW3 OMA:CQTLAGE PhylomeDB:Q9SAK5
ProtClustDB:CLSN2689327 Genevestigator:Q9SAK5 GO:GO:0010088
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 Uniprot:Q9SAK5
Length = 358
Score = 170 (64.9 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 36/59 (61%), Positives = 43/59 (72%)
Query: 208 TTQKKPRVVWTPELHRKFVGAVNQLG-VDKAVPKKILDLMNVEGLTRENVASHLQKFRL 265
TT KPR+ WT ELH +FV AV QLG DKA PK I+ +M V+GLT ++ SHLQKFRL
Sbjct: 30 TTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88
Score = 47 (21.6 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 554 NVIQNYTSKQQWLEHKQGYNQNLNNPFSNVNTLLSGNCTMG 594
N+ N T Q L+H ++QN+ N F+ N N +G
Sbjct: 217 NIYGNTTD--QVLDHHNFHHQNIENHFTG-NNAADTNIYLG 254
>TIGR_CMR|GSU_1117 [details] [associations]
symbol:GSU_1117 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P06143
RefSeq:NP_952170.1 ProteinModelPortal:Q74E47 GeneID:2686890
KEGG:gsu:GSU1117 PATRIC:22024996 OMA:ASNVIMI ProtClustDB:CLSK828188
BioCyc:GSUL243231:GH27-1119-MONOMER Uniprot:Q74E47
Length = 127
Score = 155 (59.6 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 35/121 (28%), Positives = 65/121 (53%)
Query: 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPD 81
I ++L VDD+ L L +EV + AL L++ N ++++D++MP+
Sbjct: 5 IKKKILVVDDEENARIGLTKLLEREGFEVASVSNGFEALNYLQQREVN--VIVTDINMPE 62
Query: 82 MDGFKLLEHVGLEMDLP-VIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140
M+G L + VIM++AYG + ++ + GA +Y+ KPV+++ELK+I +
Sbjct: 63 MNGITFLRELNKSFPRSNVIMITAYGGVESYIEAMNLGAFEYINKPVKLDELKSILTKIF 122
Query: 141 R 141
+
Sbjct: 123 K 123
>TAIR|locus:2011286 [details] [associations]
symbol:ARR7 "response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0019827 "stem cell
maintenance" evidence=IMP] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010200 "response to chitin" evidence=IEP] [GO:0007623
"circadian rhythm" evidence=RCA] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0010200 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492
ProtClustDB:CLSN2914197 eggNOG:COG3706 EMBL:AB008490 EMBL:AC068602
IPI:IPI00536268 PIR:T50854 RefSeq:NP_173339.1 UniGene:At.238
ProteinModelPortal:Q9ZWS7 SMR:Q9ZWS7 IntAct:Q9ZWS7 STRING:Q9ZWS7
EnsemblPlants:AT1G19050.1 GeneID:838487 KEGG:ath:AT1G19050
GeneFarm:4124 TAIR:At1g19050 InParanoid:Q9ZWS7 OMA:LRISSCK
PhylomeDB:Q9ZWS7 Genevestigator:Q9ZWS7 GermOnline:AT1G19050
GO:GO:0019827 Uniprot:Q9ZWS7
Length = 206
Score = 155 (59.6 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 44/158 (27%), Positives = 81/158 (51%)
Query: 15 GDIDKFPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLR----ENRNNF 70
GD+ + VLAVDD KV+E LR +VT AL+ L + +N
Sbjct: 15 GDLTVTTPELHVLAVDDSIVDRKVIERLLRISSCKVTTVESGTRALQYLGLDGGKGASNL 74
Query: 71 -----DLVISDVHMPDMDGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDY 122
+L+++D MP + G+ LL+ + ++PV+++S+ + + + GA ++
Sbjct: 75 KDLKVNLIVTDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLKEGAEEF 134
Query: 123 LLKPVRIEELKNIWQHVIRRKKVGPKDQNKLLNQENSR 160
LLKPV++ ++K I Q ++R + ++ K+L+ N R
Sbjct: 135 LLKPVKLADVKRIKQLIMRNEA----EECKILSHSNKR 168
>TAIR|locus:2172394 [details] [associations]
symbol:MYR1 "myb-related protein 1" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 EMBL:CP002688 GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AB012246
HSSP:O49397 InterPro:IPR025756 InterPro:IPR017930
InterPro:IPR006447 Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294
IPI:IPI00538966 RefSeq:NP_197325.1 RefSeq:NP_974798.1
UniGene:At.7556 ProteinModelPortal:Q9FK47 SMR:Q9FK47
EnsemblPlants:AT5G18240.1 EnsemblPlants:AT5G18240.4 GeneID:831942
KEGG:ath:AT5G18240 TAIR:At5g18240 InParanoid:Q9FK47 OMA:LETHTRT
PhylomeDB:Q9FK47 ProtClustDB:CLSN2686543 Genevestigator:Q9FK47
Uniprot:Q9FK47
Length = 402
Score = 175 (66.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 36/67 (53%), Positives = 48/67 (71%)
Query: 208 TTQKKPRVVWTPELHRKFVGAVNQLGV-DKAVPKKILDLMNVEGLTRENVASHLQKFRLY 266
+T KPR+ WTP+LH +FV AVNQLG DKA PK I+ +M + GLT ++ SHLQK+RL
Sbjct: 41 STDAKPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSHLQKYRLS 100
Query: 267 LKRLSNE 273
K L+ +
Sbjct: 101 -KNLNGQ 106
>UNIPROTKB|Q9KQD5 [details] [associations]
symbol:VC_2065 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:GHYDFLV HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1
ProteinModelPortal:Q9KQD5 SMR:Q9KQD5 DNASU:2613445 GeneID:2613445
KEGG:vch:VC2065 PATRIC:20083164 ProtClustDB:CLSK874661
Uniprot:Q9KQD5
Length = 130
Score = 154 (59.3 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 37/123 (30%), Positives = 67/123 (54%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTV-TNQAVTALKMLRENRNNFDLVISDVHMPDM 82
M++L VDD T ++++N LR + T + +TAL ML+ + +FD V++D +MP M
Sbjct: 9 MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK--KGDFDFVVTDWNMPGM 66
Query: 83 DGFKLLEHVGLEMDL---PVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139
G LL+++ + +L PV+M++A + +++ G Y++KP LK +
Sbjct: 67 QGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKI 126
Query: 140 IRR 142
R
Sbjct: 127 FER 129
>TIGR_CMR|VC_2065 [details] [associations]
symbol:VC_2065 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:GHYDFLV
HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1 ProteinModelPortal:Q9KQD5
SMR:Q9KQD5 DNASU:2613445 GeneID:2613445 KEGG:vch:VC2065
PATRIC:20083164 ProtClustDB:CLSK874661 Uniprot:Q9KQD5
Length = 130
Score = 154 (59.3 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 37/123 (30%), Positives = 67/123 (54%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTV-TNQAVTALKMLRENRNNFDLVISDVHMPDM 82
M++L VDD T ++++N LR + T + +TAL ML+ + +FD V++D +MP M
Sbjct: 9 MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK--KGDFDFVVTDWNMPGM 66
Query: 83 DGFKLLEHVGLEMDL---PVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139
G LL+++ + +L PV+M++A + +++ G Y++KP LK +
Sbjct: 67 QGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKI 126
Query: 140 IRR 142
R
Sbjct: 127 FER 129
>TAIR|locus:2087740 [details] [associations]
symbol:AT3G12730 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 HOGENOM:HOG000239390
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY070764
EMBL:AY143916 IPI:IPI00519091 RefSeq:NP_187879.2 UniGene:At.28330
ProteinModelPortal:Q8VYI2 SMR:Q8VYI2 EnsemblPlants:AT3G12730.1
GeneID:820455 KEGG:ath:AT3G12730 TAIR:At3g12730 eggNOG:NOG317938
InParanoid:Q8VYI2 OMA:CETQEAS PhylomeDB:Q8VYI2
ProtClustDB:CLSN2917937 Genevestigator:Q8VYI2 Uniprot:Q8VYI2
Length = 235
Score = 164 (62.8 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 34/59 (57%), Positives = 42/59 (71%)
Query: 208 TTQKKPRVVWTPELHRKFVGAVNQLG-VDKAVPKKILDLMNVEGLTRENVASHLQKFRL 265
TT KPR+ WT ELH +FV AV LG +KA PK I+ +M V+GLT ++ SHLQKFRL
Sbjct: 19 TTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 77
>TIGR_CMR|BA_0651 [details] [associations]
symbol:BA_0651 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_843182.1
RefSeq:YP_017279.1 RefSeq:YP_026895.1 ProteinModelPortal:Q81V49
DNASU:1088070 EnsemblBacteria:EBBACT00000008363
EnsemblBacteria:EBBACT00000015665 EnsemblBacteria:EBBACT00000022532
GeneID:1088070 GeneID:2814886 GeneID:2850289 KEGG:ban:BA_0651
KEGG:bar:GBAA_0651 KEGG:bat:BAS0618 OMA:LWDEAKH
ProtClustDB:CLSK915873 BioCyc:BANT260799:GJAJ-677-MONOMER
BioCyc:BANT261594:GJ7F-704-MONOMER Uniprot:Q81V49
Length = 225
Score = 161 (61.7 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 39/117 (33%), Positives = 65/117 (55%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L VDD+P L++L +L Y A+ + EN+N F ++ D+ MP MDG+
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHI-ENQN-FKFILLDIMMPKMDGW 61
Query: 86 KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
+ + + ++P+IM++A T V++G+ GA DY+ KP EEL + V+RR
Sbjct: 62 ETCKKIRSFSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRR 118
>TAIR|locus:2031210 [details] [associations]
symbol:AT1G25550 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010167 "response to nitrate" evidence=RCA] [GO:0015706
"nitrate transport" evidence=RCA] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684 GO:GO:0003677
GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 HOGENOM:HOG000237574
ProtClustDB:CLSN2687960 EMBL:AF326890 EMBL:AF339707 EMBL:AF372906
EMBL:BT002674 IPI:IPI00533337 RefSeq:NP_564236.1 UniGene:At.25159
ProteinModelPortal:Q9FPE8 SMR:Q9FPE8 IntAct:Q9FPE8 STRING:Q9FPE8
PRIDE:Q9FPE8 EnsemblPlants:AT1G25550.1 GeneID:839142
KEGG:ath:AT1G25550 TAIR:At1g25550 InParanoid:Q9FPE8 OMA:ECSERTT
PhylomeDB:Q9FPE8 ArrayExpress:Q9FPE8 Genevestigator:Q9FPE8
Uniprot:Q9FPE8
Length = 344
Score = 173 (66.0 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 35/73 (47%), Positives = 49/73 (67%)
Query: 207 STTQKKPRVVWTPELHRKFVGAVNQLGVDK-AVPKKILDLMNVEGLTRENVASHLQKFRL 265
S + +K R W+PELHR+F+ A+ QLG A PK+I DLM V+GLT + V SHLQK+RL
Sbjct: 204 SHSNRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRDLMKVDGLTNDEVKSHLQKYRL 263
Query: 266 YLKRLSNETPQAG 278
+ +R + + G
Sbjct: 264 HTRRPATPVVRTG 276
Score = 41 (19.5 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 6/25 (24%), Positives = 17/25 (68%)
Query: 33 PTCLKVLENFLRACQYEVTVTNQAV 57
P CL+++ + +C+ E++ +++ V
Sbjct: 40 PLCLELVTQAIESCRKELSESSEHV 64
>TIGR_CMR|CPS_1750 [details] [associations]
symbol:CPS_1750 "transcriptional regulatory protein CpxR"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0009636 "response to
toxic substance" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 KO:K07662 RefSeq:YP_268481.1
ProteinModelPortal:Q484N4 STRING:Q484N4 GeneID:3518457
KEGG:cps:CPS_1750 PATRIC:21466667
BioCyc:CPSY167879:GI48-1820-MONOMER Uniprot:Q484N4
Length = 242
Score = 165 (63.1 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 41/128 (32%), Positives = 72/128 (56%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L +DDD ++L +L + ++VT + L ++ +FDL++ DV MP ++GF
Sbjct: 11 ILLIDDDAELSELLTEYLESENFKVTSCLDGASGLAKAFDD--SFDLILLDVMMPILNGF 68
Query: 86 KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKV 145
++L+ +G P++ML+A GD + G+ GA DYL KP + EL + ++RR +
Sbjct: 69 EVLKALGGNHKTPILMLTAKGDDNDRILGLELGADDYLAKPFKHRELLARIKAILRRISI 128
Query: 146 GPKDQNKL 153
K Q+ L
Sbjct: 129 -VKSQSTL 135
>TIGR_CMR|CPS_1260 [details] [associations]
symbol:CPS_1260 "putative nitrate/nitrite DNA-binding
response regulator" species:167879 "Colwellia psychrerythraea 34H"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR000792 InterPro:IPR001789 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038 PROSITE:PS00622
PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421 SMART:SM00448
GO:GO:0035556 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 SUPFAM:SSF46894 eggNOG:COG2197 HOGENOM:HOG000034813
KO:K07684 RefSeq:YP_268003.1 ProteinModelPortal:Q486L2
STRING:Q486L2 GeneID:3521261 KEGG:cps:CPS_1260 PATRIC:21465757
OMA:THKRNIK ProtClustDB:CLSK938262
BioCyc:CPSY167879:GI48-1341-MONOMER Uniprot:Q486L2
Length = 206
Score = 153 (58.9 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 42/137 (30%), Positives = 75/137 (54%)
Query: 24 MRVLAVDDDPTCLKVLENFLRA--CQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPD 81
++VL VDD P + L++ L C V AL++++ +FD+V+ D++MP+
Sbjct: 2 IKVLLVDDHPLFREGLKHRLSLDDCIEVVGEAENGKQALELIKSL--DFDIVLMDINMPE 59
Query: 82 MDGFKLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140
MDG +LE + ++D V+MLS + + + ++ + HGA Y+LK V EL + VI
Sbjct: 60 MDGMYVLELIKEQDLDCKVLMLSMHDNKEYILGAMRHGADGYILKDVPGAELIEAIKKVI 119
Query: 141 RRKKVGPKDQNKLLNQE 157
K + ++L++E
Sbjct: 120 SGKHYFSSEVTEILSKE 136
>TIGR_CMR|BA_1312 [details] [associations]
symbol:BA_1312 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_843778.1 RefSeq:YP_017926.1 RefSeq:YP_027483.1
ProteinModelPortal:Q81TG5 DNASU:1086011
EnsemblBacteria:EBBACT00000008055 EnsemblBacteria:EBBACT00000016708
EnsemblBacteria:EBBACT00000023489 GeneID:1086011 GeneID:2814757
GeneID:2850086 KEGG:ban:BA_1312 KEGG:bar:GBAA_1312 KEGG:bat:BAS1213
OMA:WDEAENG ProtClustDB:CLSK916176
BioCyc:BANT260799:GJAJ-1288-MONOMER
BioCyc:BANT261594:GJ7F-1346-MONOMER Uniprot:Q81TG5
Length = 223
Score = 160 (61.4 bits), Expect = 6.2e-10, P = 6.2e-10
Identities = 45/147 (30%), Positives = 79/147 (53%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
RVL VDD+ +++ +L YE ALK L + ++D V+ D+ MP+MDG
Sbjct: 5 RVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETD--HYDFVVLDIMMPEMDG 62
Query: 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR-K 143
+ + + D+P+I L+A G+ + G+ GA DY++KP EL + V+RR
Sbjct: 63 LSVCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYT 122
Query: 144 KVGPKDQNK----LLNQENSRVGA-GE 165
K +++ + L+N+++ ++ A GE
Sbjct: 123 KQEQQEEIQFGPILINEKSRKIEADGE 149
>TAIR|locus:2026863 [details] [associations]
symbol:AT1G68670 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009737 "response to abscisic acid stimulus" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GO:GO:0009737 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY063886
EMBL:AY091241 IPI:IPI00541260 RefSeq:NP_564938.1 UniGene:At.27154
ProteinModelPortal:Q8VZS3 SMR:Q8VZS3 IntAct:Q8VZS3
EnsemblPlants:AT1G68670.1 GeneID:843197 KEGG:ath:AT1G68670
TAIR:At1g68670 HOGENOM:HOG000237574 InParanoid:Q8VZS3 OMA:EHESSPE
PhylomeDB:Q8VZS3 ProtClustDB:CLSN2687960 ArrayExpress:Q8VZS3
Genevestigator:Q8VZS3 Uniprot:Q8VZS3
Length = 354
Score = 172 (65.6 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 39/77 (50%), Positives = 50/77 (64%)
Query: 207 STTQKKPRVVWTPELHRKFVGAVNQLGVDK-AVPKKILDLMNVEGLTRENVASHLQKFRL 265
S T +K R W+PELHR+F+ A+ QLG A PK+I D M V+GLT + V SHLQK+RL
Sbjct: 210 SHTHRKQRRCWSPELHRRFLNALQQLGGSHVATPKQIRDHMKVDGLTNDEVKSHLQKYRL 269
Query: 266 YLKRLSNETPQAGMVAA 282
+ +R P A VAA
Sbjct: 270 HTRR-----PAATSVAA 281
Score = 42 (19.8 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 33 PTCLKVLENFLRACQYEVTVT 53
P CL+++ + AC+ E++ T
Sbjct: 36 PLCLELVTQAIEACRKELSGT 56
>TIGR_CMR|BA_5275 [details] [associations]
symbol:BA_5275 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 HSSP:Q9WYN0 RefSeq:NP_847454.1
RefSeq:YP_021932.1 ProteinModelPortal:Q81XG2 DNASU:1084753
EnsemblBacteria:EBBACT00000010296 EnsemblBacteria:EBBACT00000014121
GeneID:1084753 GeneID:2818753 KEGG:ban:BA_5275 KEGG:bar:GBAA_5275
PATRIC:18788180 OMA:NANILQF ProtClustDB:CLSK917582
BioCyc:BANT261594:GJ7F-5148-MONOMER Uniprot:Q81XG2
Length = 221
Score = 159 (61.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 34/118 (28%), Positives = 67/118 (56%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L ++D+P +++ FL A + V V + + + +N++DLV+ DV +PD+DG+
Sbjct: 4 ILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQ--KNSYDLVLLDVMLPDIDGY 61
Query: 86 KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEE-LKNIWQHVIRR 142
+ + + + D+P+IML+ + + +KG G DY+ KP +K + + V+RR
Sbjct: 62 SICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRV-EAVLRR 118
>TIGR_CMR|NSE_0512 [details] [associations]
symbol:NSE_0512 "response regulator/GGDEF domain protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG3706 EMBL:CP000237
GenomeReviews:CP000237_GR KO:K02488 HOGENOM:HOG000167204
ProtClustDB:PRK09581 RefSeq:YP_506396.1 ProteinModelPortal:Q2GDQ0
STRING:Q2GDQ0 GeneID:3931788 KEGG:nse:NSE_0512 PATRIC:22681073
OMA:TELGIND BioCyc:NSEN222891:GHFU-532-MONOMER Uniprot:Q2GDQ0
Length = 456
Score = 173 (66.0 bits), Expect = 9.2e-10, P = 9.2e-10
Identities = 43/142 (30%), Positives = 83/142 (58%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L VDD P+ +K+LE L A Y+V + + A+++ ++++ D+++ DV MP+MDGF
Sbjct: 5 ILVVDDIPSNIKILEIKLTAKYYQVITASSGIAAIELAKQHQP--DVILLDVMMPEMDGF 62
Query: 86 KLLEHVGLE---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
+ + + M +PVI+++A D + ++G+ GA D+L+KP + L + ++R
Sbjct: 63 ETCRRLKSDYATMHIPVIIVTALNDIENKVEGLNSGADDFLVKPAKDFTLFIRIKSLLRF 122
Query: 143 KKVGPKDQNKLLNQENSRVGAG 164
K V D+ +L S++ +G
Sbjct: 123 KTV--LDEVRLRISTKSQITSG 142
>UNIPROTKB|Q4KG39 [details] [associations]
symbol:cheY "Chemotaxis protein CheY" species:220664
"Pseudomonas protegens Pf-5" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0005622 GO:GO:0006935
EMBL:CP000076 GenomeReviews:CP000076_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 OMA:FGFVISD RefSeq:YP_258794.1
ProteinModelPortal:Q4KG39 SMR:Q4KG39 STRING:Q4KG39 GeneID:3477601
KEGG:pfl:PFL_1668 PATRIC:19872565 ProtClustDB:CLSK715044
BioCyc:PFLU220664:GIX8-1676-MONOMER Uniprot:Q4KG39
Length = 123
Score = 151 (58.2 bits), Expect = 9.6e-10, P = 9.6e-10
Identities = 37/123 (30%), Positives = 65/123 (52%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTV-TNQAVTALKMLRENRNNFDLVISDVHMPDM 82
M++L VDD T ++++N LR + TV + TA+ +L N + D +++D +MP M
Sbjct: 1 MKILIVDDFSTMRRIIKNLLRDLGFTNTVEADDGTTAIPVL--NSGSIDFLVTDWNMPGM 58
Query: 83 DGFKLLEHVGLE---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139
G LL HV + LPV+M++A + +++ G Y++KP + LK + +
Sbjct: 59 TGIDLLRHVRADEKLKHLPVLMVTAEAKREQIIEAAQAGVNGYVVKPFTAQALKEKIEKI 118
Query: 140 IRR 142
R
Sbjct: 119 FER 121
>TIGR_CMR|CHY_1018 [details] [associations]
symbol:CHY_1018 "chemotaxis response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 OMA:PFQAPKV
RefSeq:YP_359865.1 ProteinModelPortal:Q3ADB9 SMR:Q3ADB9
STRING:Q3ADB9 GeneID:3728492 KEGG:chy:CHY_1018 PATRIC:21275169
BioCyc:CHYD246194:GJCN-1017-MONOMER Uniprot:Q3ADB9
Length = 121
Score = 151 (58.2 bits), Expect = 9.6e-10, P = 9.6e-10
Identities = 37/120 (30%), Positives = 65/120 (54%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
RVL VDD +++N L YEV A++M +E + D+V D+ MP+MD
Sbjct: 4 RVLIVDDAAFMRMMIKNILVKNGYEVVGEAENGAQAVEMYKELKP--DVVTMDITMPEMD 61
Query: 84 GFKLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
G + + + ++ + +IM SA G LVM+ I GA D+++KP + + + ++ ++R
Sbjct: 62 GIQAVREIKKIDPNAKIIMCSAMGQQALVMEAIQAGAIDFIVKPFQQDRILQAFEKTLKR 121
>TAIR|locus:2170723 [details] [associations]
symbol:ARR6 "response regulator 6" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007623 "circadian rhythm" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009536 GO:GO:0006355 GO:GO:0006351 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2684027
EMBL:AB008489 EMBL:AB008491 EMBL:AB009053 EMBL:BT004799
IPI:IPI00547780 PIR:T50857 PIR:T50860 RefSeq:NP_201097.1
UniGene:At.24207 ProteinModelPortal:Q9ZWS6 SMR:Q9ZWS6 IntAct:Q9ZWS6
STRING:Q9ZWS6 EnsemblPlants:AT5G62920.1 GeneID:836412
KEGG:ath:AT5G62920 GeneFarm:4123 TAIR:At5g62920 InParanoid:Q9ZWS6
OMA:DDSQEIK PhylomeDB:Q9ZWS6 Genevestigator:Q9ZWS6
GermOnline:AT5G62920 Uniprot:Q9ZWS6
Length = 186
Score = 151 (58.2 bits), Expect = 9.6e-10, P = 9.6e-10
Identities = 45/152 (29%), Positives = 79/152 (51%)
Query: 21 PIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKML----RENRNNFD----- 71
P + VLAVDD K +E LR +VTV + A AL+ L E F+
Sbjct: 22 PDPLHVLAVDDSHVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDVEEKSVGFEDLKVN 81
Query: 72 LVISDVHMPDMDGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVR 128
L+++D MP M G++LL+ + ++PV+++S+ + + + GA D+LLKPV+
Sbjct: 82 LIMTDYSMPGMTGYELLKKIKESSAFREVPVVIMSSENILPRIDRCLEEGAEDFLLKPVK 141
Query: 129 IEELKNIWQHVIRRKKVG-PKD-QNKLLNQEN 158
+ ++K + +++ + + K Q + L EN
Sbjct: 142 LSDVKRLRDSLMKVEDLSFTKSIQKRELETEN 173
>TAIR|locus:2097870 [details] [associations]
symbol:RR5 "response regulator 5" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IMP] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0010114 "response to red light"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA;IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009963 "positive regulation of flavonoid
biosynthetic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 GO:GO:0005737 GO:GO:0009536
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0010114 GO:GO:0009736 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AL049658
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008488 EMBL:AB010916
EMBL:AF057281 EMBL:AY072390 EMBL:AY114698 IPI:IPI00516847
PIR:T06673 PIR:T50855 PIR:T50856 RefSeq:NP_190393.1
UniGene:At.24915 ProteinModelPortal:Q9SB04 SMR:Q9SB04 IntAct:Q9SB04
STRING:Q9SB04 EnsemblPlants:AT3G48100.1 GeneID:823965
KEGG:ath:AT3G48100 GeneFarm:4122 TAIR:At3g48100 InParanoid:Q9SB04
OMA:LEANDIY PhylomeDB:Q9SB04 ProtClustDB:CLSN2684027
Genevestigator:Q9SB04 GermOnline:AT3G48100 Uniprot:Q9SB04
Length = 184
Score = 150 (57.9 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 40/134 (29%), Positives = 74/134 (55%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLR-ENRNN----FD-----LV 73
+ VLAVDD K +E LR +VTV + A AL+ L + NN F+ L+
Sbjct: 25 LHVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDGENNSSVGFEDLKINLI 84
Query: 74 ISDVHMPDMDGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIE 130
++D MP M G++LL+ + ++PV+++S+ + + + GA D+LLKPV++
Sbjct: 85 MTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDRCLEEGAEDFLLKPVKLA 144
Query: 131 ELKNIWQHVIRRKK 144
++K + +++ ++
Sbjct: 145 DVKRLRDSLMKAEE 158
>UNIPROTKB|Q3JZR1 [details] [associations]
symbol:csrR "DNA-binding response regulator CsrR"
species:205921 "Streptococcus agalactiae A909" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815
EMBL:CP000114 RefSeq:YP_330242.1 ProteinModelPortal:Q3JZR1
EnsemblBacteria:EBSTRT00000004344 GeneID:3685998
GenomeReviews:CP000114_GR KEGG:sak:SAK_1639 PATRIC:19634591
OMA:LASVWRY ProtClustDB:CLSK634230
BioCyc:SAGA205921:GHD7-1647-MONOMER Uniprot:Q3JZR1
Length = 229
Score = 160 (61.4 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 36/131 (27%), Positives = 69/131 (52%)
Query: 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPD 81
+G ++L ++D+ + + L Y+V V L E +FDL++ D+ +P+
Sbjct: 1 MGKKILIIEDEKNLARFVSLELLHEGYDVVVETNGREGLDTALEK--DFDLILLDLMLPE 58
Query: 82 MDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141
MDGF++ + E ++M++A ++ G+ GA DY++KP IEEL + + R
Sbjct: 59 MDGFEITRRLQAEKTTYIMMMTARDSVMDIVAGLDRGADDYIVKPFAIEELLARVRAIFR 118
Query: 142 RKKVGPKDQNK 152
R+++ K + K
Sbjct: 119 RQEIETKTKEK 129
>UNIPROTKB|Q3ADA5 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 149 (57.5 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 40/111 (36%), Positives = 61/111 (54%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNN-FDLVISDVHMPDM 82
M+VL VDD T + + + +EV +AV L+ L + N FDL+ DV+MP M
Sbjct: 1 MKVLIVDDSFTVRQYFKEIFQGFSWEV---EEAVNGLEALEKVLNGEFDLMTVDVNMPKM 57
Query: 83 DGFKLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
DG+ + V + + LPVI++S +KG+ GA YL+KPV E++
Sbjct: 58 DGYTFVYKVREMGVSLPVILISTESKEHDKLKGLQAGATLYLVKPVLPEQI 108
>TIGR_CMR|CHY_1032 [details] [associations]
symbol:CHY_1032 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622
GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 149 (57.5 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 40/111 (36%), Positives = 61/111 (54%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNN-FDLVISDVHMPDM 82
M+VL VDD T + + + +EV +AV L+ L + N FDL+ DV+MP M
Sbjct: 1 MKVLIVDDSFTVRQYFKEIFQGFSWEV---EEAVNGLEALEKVLNGEFDLMTVDVNMPKM 57
Query: 83 DGFKLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
DG+ + V + + LPVI++S +KG+ GA YL+KPV E++
Sbjct: 58 DGYTFVYKVREMGVSLPVILISTESKEHDKLKGLQAGATLYLVKPVLPEQI 108
>TIGR_CMR|BA_4920 [details] [associations]
symbol:BA_4920 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 GenomeReviews:AE016879_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_847118.1 RefSeq:YP_021563.2
ProteinModelPortal:Q81KS0 DNASU:1084104
EnsemblBacteria:EBBACT00000011298 EnsemblBacteria:EBBACT00000014550
GeneID:1084104 GeneID:2819868 KEGG:ban:BA_4920 KEGG:bar:GBAA_4920
PATRIC:18787418 OMA:FFVTHPN ProtClustDB:CLSK882384
BioCyc:BANT261594:GJ7F-4779-MONOMER Uniprot:Q81KS0
Length = 229
Score = 156 (60.0 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 32/122 (26%), Positives = 71/122 (58%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
R+L ++D+ + ++ ++L ++V V + T L+M + ++DL+I D+ +P M+G
Sbjct: 3 RILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQE--DYDLIILDIMLPKMNG 60
Query: 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL-KNIWQHVIRRK 143
F++ + + D+P++++SA + ++G+ GA DY+ KP EL + H+ R +
Sbjct: 61 FEICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYE 120
Query: 144 KV 145
++
Sbjct: 121 RL 122
Score = 38 (18.4 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 285 SKDSSYLRIGALDGFGDLRSL 305
+K+ + RI LD GDL ++
Sbjct: 176 NKEQLFERIWGLDSAGDLATV 196
>TAIR|locus:2063746 [details] [associations]
symbol:AT2G03500 "AT2G03500" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC006284
HOGENOM:HOG000237574 EMBL:AY060559 EMBL:AY133630 EMBL:AK221662
IPI:IPI00544167 PIR:B84449 RefSeq:NP_027544.1 UniGene:At.27373
ProteinModelPortal:Q9ZQ85 SMR:Q9ZQ85 IntAct:Q9ZQ85
EnsemblPlants:AT2G03500.1 GeneID:814878 KEGG:ath:AT2G03500
TAIR:At2g03500 eggNOG:NOG301728 InParanoid:Q9ZQ85 OMA:QSYSMLL
PhylomeDB:Q9ZQ85 ProtClustDB:CLSN2687945 ArrayExpress:Q9ZQ85
Genevestigator:Q9ZQ85 Uniprot:Q9ZQ85
Length = 432
Score = 169 (64.5 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 35/71 (49%), Positives = 50/71 (70%)
Query: 207 STTQKKPRVVWTPELHRKFVGAVNQLGVDK-AVPKKILDLMNVEGLTRENVASHLQKFRL 265
S + +K R W+P+LHR+FV A+ LG + A PK+I +LM V+GLT + V SHLQK+RL
Sbjct: 228 SQSNRKARRCWSPDLHRRFVQALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRL 287
Query: 266 YLKRLSNETPQ 276
+ +R S +PQ
Sbjct: 288 HTRRPS-PSPQ 297
>TIGR_CMR|GSU_1495 [details] [associations]
symbol:GSU_1495 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_952546.1 ProteinModelPortal:Q74D24 GeneID:2686126
KEGG:gsu:GSU1495 PATRIC:22025837 KO:K02667 OMA:IHARAGH
ProtClustDB:CLSK828394 BioCyc:GSUL243231:GH27-1478-MONOMER
Uniprot:Q74D24
Length = 458
Score = 169 (64.5 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 46/136 (33%), Positives = 74/136 (54%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
+ VL VDD+ + + L L Y V A AL L R +DLVISDV MP +D
Sbjct: 3 IHVLVVDDELSMREFLAILLDREGYTVDQAASAEEALACLE--RKTYDLVISDVKMPGLD 60
Query: 84 GFKLLEHVGLEM--DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141
G LL + EM D V++++A+ + ++ + GA DY+ KP ++EE+K + ++ +
Sbjct: 61 GITLLGRIK-EMTPDTAVLLMTAFSTAEQAVEAMKLGAYDYIAKPFKVEEVKILARNALE 119
Query: 142 RKKVGPKDQNKLLNQE 157
++ + K +N L QE
Sbjct: 120 KRDL--KRENLRLRQE 133
>TIGR_CMR|BA_1497 [details] [associations]
symbol:BA_1497 "DNA-binding response regulator ResD"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009060 "aerobic respiration"
evidence=ISS] [GO:0009061 "anaerobic respiration" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402 RefSeq:NP_843949.1
RefSeq:YP_018120.1 RefSeq:YP_027655.1 ProteinModelPortal:Q81SZ6
DNASU:1087158 EnsemblBacteria:EBBACT00000009602
EnsemblBacteria:EBBACT00000013896 EnsemblBacteria:EBBACT00000020931
GeneID:1087158 GeneID:2818509 GeneID:2850870 KEGG:ban:BA_1497
KEGG:bar:GBAA_1497 KEGG:bat:BAS1386 KO:K07775 OMA:VWHYEFF
ProtClustDB:CLSK873069 BioCyc:BANT260799:GJAJ-1460-MONOMER
BioCyc:BANT261594:GJ7F-1522-MONOMER Uniprot:Q81SZ6
Length = 238
Score = 159 (61.0 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 38/118 (32%), Positives = 67/118 (56%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
R+L VDD+ ++L+ +L QY + + TAL+M +N ++DL++ D+ MP DG
Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQN--DYDLILLDLMMPGKDG 63
Query: 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
++ + V + P+IML+A G+ ++G G DY++KP E+ + V+RR
Sbjct: 64 IEVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121
>UNIPROTKB|Q4K714 [details] [associations]
symbol:PFL_4888 "Sigma-54 dependent DNA-binding response
regulator" species:220664 "Pseudomonas protegens Pf-5" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0006355
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
KO:K02481 RefSeq:YP_261969.1 ProteinModelPortal:Q4K714
STRING:Q4K714 GeneID:3479299 KEGG:pfl:PFL_4888 PATRIC:19879244
OMA:CVERATI ProtClustDB:CLSK937927
BioCyc:PFLU220664:GIX8-4929-MONOMER Uniprot:Q4K714
Length = 465
Score = 168 (64.2 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 41/108 (37%), Positives = 61/108 (56%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L VDD+P +L + L +V + ALK+L + + DLVISD MP MDG
Sbjct: 5 LLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVLEQE--DIDLVISDWRMPGMDGP 62
Query: 86 KLLEHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
+LL + LPVI+++AY K ++ + +GA DY+ KP I+EL
Sbjct: 63 QLLGEIKQRYPQLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDEL 110
Score = 45 (20.9 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 658 RDSNETILMDGELG 671
R+SN TIL+ GE G
Sbjct: 161 RESNATILLTGESG 174
>TIGR_CMR|CHY_1367 [details] [associations]
symbol:CHY_1367 "C4-dicarboxylate response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR005471
InterPro:IPR024187 Pfam:PF00072 Pfam:PF09339 PIRSF:PIRSF006171
PROSITE:PS50110 SMART:SM00448 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0009605 GO:GO:0001071
eggNOG:COG4565 HOGENOM:HOG000034816 RefSeq:YP_360200.1
ProteinModelPortal:Q3ACD4 STRING:Q3ACD4 GeneID:3728031
KEGG:chy:CHY_1367 PATRIC:21275867 KO:K11692 OMA:YMPKKDG
BioCyc:CHYD246194:GJCN-1366-MONOMER Uniprot:Q3ACD4
Length = 220
Score = 155 (59.6 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 40/158 (25%), Positives = 89/158 (56%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQ-YEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ + V+DDP L++ +NF++ + +E+ ++ + L +N + +L+I D+++PD+
Sbjct: 2 IKTVIVEDDPMVLEINKNFIKEVEGFEIIAALKSGSELLNFLKNHSP-ELLILDIYLPDI 60
Query: 83 DGFKLLEHVGLE-MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL-KNIWQHVI 140
DG LL+ + + + + V+ ++A ++V + + +G DY++KP + E L K + +
Sbjct: 61 DGLTLLKEIRRQNISVDVLAITAAQQGEIVAELLRYGVVDYIIKPFKKERLVKALLTYKN 120
Query: 141 RRKKVGPKDQNKLLNQEN-SRVGAGEGGQGAMSTGNSD 177
+ K+G K + + QE+ R+ A G + G +D
Sbjct: 121 KYLKIGRK---RSVQQEDIDRLFARSSAGGELPKGLND 155
>TAIR|locus:2010297 [details] [associations]
symbol:AT1G49560 "AT1G49560" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC011807 EMBL:AK221631
IPI:IPI00546952 PIR:B96532 RefSeq:NP_564549.1 UniGene:At.38204
ProteinModelPortal:Q9FX84 SMR:Q9FX84 EnsemblPlants:AT1G49560.1
GeneID:841380 KEGG:ath:AT1G49560 TAIR:At1g49560 InParanoid:Q9FX84
OMA:SSMEDVE PhylomeDB:Q9FX84 ProtClustDB:CLSN2917204
Genevestigator:Q9FX84 Uniprot:Q9FX84
Length = 333
Score = 165 (63.1 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 37/81 (45%), Positives = 51/81 (62%)
Query: 211 KKPRVVWTPELHRKFVGAVNQLG-VDKAVPKKILDLMNVEGLTRENVASHLQKFRLYLKR 269
+K R W PELHR+FV A+ QLG A PK+I + M EGLT + V SHLQK+RL++++
Sbjct: 191 RKQRRCWNPELHRRFVDALQQLGGPGVATPKQIREHMQEEGLTNDEVKSHLQKYRLHIRK 250
Query: 270 L-SNETPQAGMVAALGSKDSS 289
SN Q+ +V +SS
Sbjct: 251 PNSNAEKQSAVVLGFNLWNSS 271
>UNIPROTKB|Q4GZK3 [details] [associations]
symbol:rr8 "Type A response regulator 8" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:AJ938077 ProteinModelPortal:Q4GZK3
STRING:Q4GZK3 KEGG:dosa:Os08t0376700-01 KEGG:dosa:Os08t0377200-01
Gramene:Q4GZK3 Uniprot:Q4GZK3
Length = 121
Score = 146 (56.5 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 38/117 (32%), Positives = 61/117 (52%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
VL VDD V+ L VT + AL L ++ ++ D+++SD MPDM G+
Sbjct: 6 VLVVDDTHVDRHVVSMALMRHNVRVTAVESVMQALMFL-DSEHDVDMIVSDYCMPDMTGY 64
Query: 86 KLLEHVGLE---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139
LL V LPV++ S+ + + K + GA DY+LKPV+I ++ I +++
Sbjct: 65 NLLMEVKKSPKLAHLPVVIASSDNIPERIRKCLDGGAKDYILKPVKIVDVPRIMKYI 121
>UNIPROTKB|Q48GG3 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_275520.1
ProteinModelPortal:Q48GG3 SMR:Q48GG3 STRING:Q48GG3 GeneID:3558182
KEGG:psp:PSPPH_3362 PATRIC:19976130 OMA:GHYDFLV
ProtClustDB:CLSK642753 Uniprot:Q48GG3
Length = 124
Score = 145 (56.1 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 37/123 (30%), Positives = 64/123 (52%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTV-TNQAVTALKMLRENRNNFDLVISDVHMPDM 82
M++L VDD T ++++N LR + T + +TAL ML+ FD +++D +MP M
Sbjct: 1 MKILIVDDFSTMRRIIKNLLRDLGFTNTSEADDGLTALPMLQSGA--FDFLVTDWNMPGM 58
Query: 83 DGFKLLEHVGLE---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139
G LL V + LPV+M++A + +++ G Y++KP + LK + +
Sbjct: 59 TGIDLLRQVRADERLKSLPVLMVTAEAKREQIIEAAQAGVNGYVVKPFTAQALKEKIEKI 118
Query: 140 IRR 142
R
Sbjct: 119 FER 121
>TAIR|locus:2041539 [details] [associations]
symbol:AT2G42660 "AT2G42660" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AC006931 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AC007087 EMBL:AY074640 EMBL:AY078938
IPI:IPI00542274 PIR:F84856 RefSeq:NP_181794.1 UniGene:At.37023
ProteinModelPortal:Q9SJJ0 SMR:Q9SJJ0 PaxDb:Q9SJJ0 PRIDE:Q9SJJ0
EnsemblPlants:AT2G42660.1 GeneID:818866 KEGG:ath:AT2G42660
TAIR:At2g42660 eggNOG:NOG258430 HOGENOM:HOG000153491 OMA:NREETVE
PhylomeDB:Q9SJJ0 ProtClustDB:CLSN2913320 ArrayExpress:Q9SJJ0
Genevestigator:Q9SJJ0 Uniprot:Q9SJJ0
Length = 255
Score = 159 (61.0 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 45/122 (36%), Positives = 68/122 (55%)
Query: 213 PRVVWTPELHRKFVGAVNQLG-VDKAVPKKILDLMNVEGLTRENVASHLQKFRLYLKRLS 271
PR+ WTP+LH FV AV +LG D+A PK +L++MN++GL+ +V SHLQ +R K+L
Sbjct: 51 PRLRWTPDLHLSFVRAVQRLGGPDRATPKLVLEMMNLKGLSIAHVKSHLQMYRS--KKLE 108
Query: 272 NETPQAGMVAALGSKDSSYLRIGALDG----FGDLRSLNSPGRLSSSAISSSYVPGNMFG 327
+ + G A + S SYL + +D DLR + + S ++ V N+ G
Sbjct: 109 PSS-RPGFGAFM-SGQRSYL-MDMIDSRCIPHSDLRHAYNSKTVPSRVLNQDAVVTNLGG 165
Query: 328 RF 329
F
Sbjct: 166 NF 167
>TAIR|locus:2194584 [details] [associations]
symbol:ARR4 "response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0010017
"red or far-red light signaling pathway" evidence=IMP] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS]
[GO:0010114 "response to red light" evidence=IMP] [GO:0009793
"embryo development ending in seed dormancy" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA;IMP] [GO:0042752
"regulation of circadian rhythm" evidence=IGI] [GO:0009735
"response to cytokinin stimulus" evidence=IEP] [GO:0004674 "protein
serine/threonine kinase activity" evidence=IDA] [GO:0046777
"protein autophosphorylation" evidence=IDA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009963 "positive
regulation of flavonoid biosynthetic process" evidence=RCA]
[GO:0010363 "regulation of plant-type hypersensitive response"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0007623 GO:GO:0004674
GO:GO:0046777 GO:GO:0006351 GO:GO:0042752 GO:GO:0010114
GO:GO:0009793 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC007067 GO:GO:0010017
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2912722
EMBL:AB008487 EMBL:AB010915 EMBL:AF057282 IPI:IPI00523637
PIR:T48851 RefSeq:NP_172517.1 UniGene:At.22981 UniGene:At.67259
ProteinModelPortal:O82798 SMR:O82798 IntAct:O82798 STRING:O82798
EnsemblPlants:AT1G10470.1 GeneID:837587 KEGG:ath:AT1G10470
GeneFarm:4121 TAIR:At1g10470 InParanoid:O82798 OMA:KRIRDYM
PhylomeDB:O82798 Genevestigator:O82798 GermOnline:AT1G10470
Uniprot:O82798
Length = 259
Score = 159 (61.0 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 48/164 (29%), Positives = 82/164 (50%)
Query: 8 GSAGCEDGDIDKFPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLR-EN 66
G G E +D + VLAVDD V+E LR +VT + AL+ L +N
Sbjct: 20 GIGGIESAPLDLDEV--HVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDN 77
Query: 67 --------RNNFDLVISDVHMPDMDGFKLLEHVGLEM---DLPVIMLSAYGDTKLVMKGI 115
R DL+I+D MP M G++LL+ + ++PV+++S+ + + +
Sbjct: 78 EKASAEFDRLKVDLIITDYCMPGMTGYELLKKIKESSNFREVPVVIMSSENVLTRIDRCL 137
Query: 116 THGACDYLLKPVRIEELKNIWQHVIRRKKVGPKDQNKLLNQENS 159
GA D+LLKPV++ ++K + H+ + K+ ++ KL +S
Sbjct: 138 EEGAQDFLLKPVKLADVKRLRSHLTKDVKLSNGNKRKLPEDSSS 181
>TIGR_CMR|SPO_0251 [details] [associations]
symbol:SPO_0251 "DNA-binding response regulator PetR"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
SUPFAM:SSF46894 KO:K07659 RefSeq:YP_165515.1
ProteinModelPortal:Q5LX38 GeneID:3196152 KEGG:sil:SPO0251
PATRIC:23373753 OMA:DRGQAQE ProtClustDB:CLSK933195 Uniprot:Q5LX38
Length = 233
Score = 156 (60.0 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 40/117 (34%), Positives = 62/117 (52%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L VDDD +L+ FL + VT A A ++L + +FDL++ DV MP DG
Sbjct: 8 LLIVDDDERIRDLLKKFLMRHGFLVTAARDAEHARRIL--SGLDFDLIVMDVMMPGEDGV 65
Query: 86 KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
L + + P+++L+A G+T+ + G+ GA DYL KP EL ++RR
Sbjct: 66 SLTRALRQTLSTPILLLTARGETEHRIAGLEAGADDYLAKPFEPRELLLRINAILRR 122
>DICTYBASE|DDB_G0284331 [details] [associations]
symbol:regA "response regulator receiver
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0030587 "sorocarp development" evidence=IMP] [GO:0051281
"positive regulation of release of sequestered calcium ion into
cytosol" evidence=IMP] [GO:0051279 "regulation of release of
sequestered calcium ion into cytosol" evidence=IMP] [GO:0046058
"cAMP metabolic process" evidence=IMP] [GO:0031276 "negative
regulation of lateral pseudopodium assembly" evidence=IMP]
[GO:0004115 "3',5'-cyclic-AMP phosphodiesterase activity"
evidence=IDA;IMP] [GO:0005622 "intracellular" evidence=TAS]
[GO:0006970 "response to osmotic stress" evidence=TAS] [GO:0030435
"sporulation resulting in formation of a cellular spore"
evidence=IMP] [GO:0007275 "multicellular organismal development"
evidence=IMP] [GO:0047555 "3',5'-cyclic-GMP phosphodiesterase
activity" evidence=IDA] [GO:0006198 "cAMP catabolic process"
evidence=IDA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0004114 "3',5'-cyclic-nucleotide
phosphodiesterase activity" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0030552 "cAMP binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR001789 InterPro:IPR002073 InterPro:IPR003607
InterPro:IPR023088 InterPro:IPR023174 Pfam:PF00072 Pfam:PF00233
PRINTS:PR00387 PROSITE:PS00126 PROSITE:PS50110 SMART:SM00448
SMART:SM00471 dictyBase:DDB_G0284331 GO:GO:0005829
GenomeReviews:CM000153_GR GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0030435 GO:GO:0030587 GO:GO:0005622 GO:GO:0006970
GO:GO:0051281 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG3706 EMBL:AAFI02000064 GO:GO:0030552 GO:GO:0031276
GO:GO:0004115 GO:GO:0006198 Gene3D:1.10.1300.10 EMBL:U60170
EMBL:AJ005398 RefSeq:XP_638612.1 ProteinModelPortal:Q23917
STRING:Q23917 EnsemblProtists:DDB0191479 GeneID:8624583
KEGG:ddi:DDB_G0284331 OMA:SHYETIC ProtClustDB:CLSZ2728943
Uniprot:Q23917
Length = 793
Score = 176 (67.0 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 47/152 (30%), Positives = 77/152 (50%)
Query: 18 DKF-PIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISD 76
D++ P +R+L DDD K+L N L+ Y VT+ A + + + + +DLV++D
Sbjct: 153 DEYSPSKVRILVADDDDVQRKILNNLLKKFHYNVTLVPNGEIAWEYINKGQQKYDLVLTD 212
Query: 77 VHMPDMDGFKLLEHVG---LEMDLPVIMLSAYG-DTKLVMKGITHGACDYLLKPVRIEEL 132
V MP + GF LL+ + + +PVI++S D K I G D+L KP+ E L
Sbjct: 213 VMMPHITGFDLLQRINDHPVHRHIPVILMSGTAVDYKYANDTIKIGGQDFLTKPIAKELL 272
Query: 133 KN----IWQHVIRRKKVGPKDQNKLLNQENSR 160
K + Q + +R+K ++ L QE +
Sbjct: 273 KKKIDTVLQSIWQRRK--EEEYKATLAQEREK 302
Score = 41 (19.5 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 560 TSKQQWLEHKQGYNQNLNN-PF 580
T Q EH + +LNN PF
Sbjct: 598 TDMQNHFEHTNKFQHHLNNLPF 619
>TIGR_CMR|CHY_0092 [details] [associations]
symbol:CHY_0092 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_358964.1
ProteinModelPortal:Q3AFX0 STRING:Q3AFX0 GeneID:3728314
KEGG:chy:CHY_0092 PATRIC:21273381 OMA:KLANKEF
BioCyc:CHYD246194:GJCN-92-MONOMER Uniprot:Q3AFX0
Length = 234
Score = 154 (59.3 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 39/132 (29%), Positives = 72/132 (54%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
+VL ++DD + ++ ++L + V + LK E +DL++ D+ +P +DG
Sbjct: 3 KVLIIEDDRSIAELERDYLEVAGFLVEIAVNGDQGLKKALEEE--YDLILLDLMLPGIDG 60
Query: 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL-KNIWQHVIRRK 143
F++L V E D PV+++SA + ++G+ GA DY+ KP EL + H+ R +
Sbjct: 61 FEVLRKVRAEKDTPVLLVSARREDIDKIRGLGLGADDYITKPFSPSELVARVKAHIGRYE 120
Query: 144 KV--GPKDQNKL 153
++ G K+Q+ L
Sbjct: 121 RLTGGRKNQDLL 132
Score = 38 (18.4 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 285 SKDSSYLRIGALDGFGDLRSL 305
+K+ + RI +D GDL ++
Sbjct: 175 TKEELFERIWGMDSLGDLSTV 195
>TIGR_CMR|DET_0135 [details] [associations]
symbol:DET_0135 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 KO:K02483
RefSeq:YP_180885.1 ProteinModelPortal:Q3ZA64 STRING:Q3ZA64
GeneID:3230499 KEGG:det:DET0135 PATRIC:21607359 OMA:CYNLAKE
ProtClustDB:CLSK837603 BioCyc:DETH243164:GJNF-135-MONOMER
Uniprot:Q3ZA64
Length = 230
Score = 155 (59.6 bits), Expect = 6.7e-09, P = 6.7e-09
Identities = 40/121 (33%), Positives = 66/121 (54%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L V+DD T ++L L Y++ + AL M R + + LVI DV +P MDG
Sbjct: 5 KILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALGMYRRFKPS--LVILDVMLPGMDG 62
Query: 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144
F+L + E +P++ML+A + G+ GA DYL KP ++EL + ++RR +
Sbjct: 63 FELCRLIRAESSVPILMLTARSSETDKVNGLEVGADDYLSKPFGMKELLARMRALLRRSQ 122
Query: 145 V 145
+
Sbjct: 123 M 123
>TIGR_CMR|BA_2212 [details] [associations]
symbol:BA_2212 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
RefSeq:NP_844604.1 RefSeq:YP_018854.1 RefSeq:YP_028319.1
ProteinModelPortal:Q81R46 DNASU:1085543
EnsemblBacteria:EBBACT00000012844 EnsemblBacteria:EBBACT00000018535
EnsemblBacteria:EBBACT00000022147 GeneID:1085543 GeneID:2815122
GeneID:2848498 KEGG:ban:BA_2212 KEGG:bar:GBAA_2212 KEGG:bat:BAS2056
OMA:IRATESK ProtClustDB:CLSK918052
BioCyc:BANT260799:GJAJ-2124-MONOMER
BioCyc:BANT261594:GJ7F-2201-MONOMER Uniprot:Q81R46
Length = 227
Score = 154 (59.3 bits), Expect = 8.2e-09, P = 8.2e-09
Identities = 37/131 (28%), Positives = 70/131 (53%)
Query: 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPD 81
+G R+L V+D+ +V++ L YE + A++ N+DL++ DV +P+
Sbjct: 1 MGERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKF--GNGNWDLILLDVMLPN 58
Query: 82 MDGFKLLEHVGLEMD-LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140
+ G ++L + L+ +P+I+L+A + G+ GA DY+ KP +IEEL + +
Sbjct: 59 ISGLEVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACL 118
Query: 141 RRKKVGPKDQN 151
R V +++N
Sbjct: 119 RISNVVKEEEN 129
>TIGR_CMR|SO_2426 [details] [associations]
symbol:SO_2426 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
KO:K02483 RefSeq:NP_718016.2 ProteinModelPortal:Q8EEF6
GeneID:1170140 KEGG:son:SO_2426 PATRIC:23524467 OMA:CLEMSRI
ProtClustDB:CLSK906726 Uniprot:Q8EEF6
Length = 227
Score = 154 (59.3 bits), Expect = 8.2e-09, P = 8.2e-09
Identities = 46/124 (37%), Positives = 65/124 (52%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
R+L VDDDP L + L+A +EV V L +R D+V+ D+ MP MDG
Sbjct: 3 RILLVDDDPLFRVWLTDVLKAQGHEVKCAVNGVEGLTCIRSFAP--DIVMLDLVMPQMDG 60
Query: 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144
F+LL+ E P++MLSA + + ++ GA D+L KP I+EL Q + RR
Sbjct: 61 FELLQ--ARECMTPIMMLSARDNEEDRIRSYELGADDFLTKPFSIKELLVRLQAIERRLV 118
Query: 145 VGPK 148
PK
Sbjct: 119 QRPK 122
>TAIR|locus:2157146 [details] [associations]
symbol:AT5G45580 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002688 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00931042
RefSeq:NP_199371.2 UniGene:At.50506 ProteinModelPortal:F4KEK2
SMR:F4KEK2 PRIDE:F4KEK2 DNASU:834596 EnsemblPlants:AT5G45580.1
GeneID:834596 KEGG:ath:AT5G45580 OMA:YQIEVQR Uniprot:F4KEK2
Length = 264
Score = 158 (60.7 bits), Expect = 8.3e-09, P = 8.3e-09
Identities = 32/59 (54%), Positives = 42/59 (71%)
Query: 208 TTQKKPRVVWTPELHRKFVGAVNQLG-VDKAVPKKILDLMNVEGLTRENVASHLQKFRL 265
T KPR+ WT +LH +FV AV +LG DKA PK +L LM ++GLT ++ SHLQK+RL
Sbjct: 3 TRDPKPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYRL 61
>UNIPROTKB|Q52884 [details] [associations]
symbol:cheY2 "CheY2" species:382 "Sinorhizobium meliloti"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:U13166
GenomeReviews:AL591688_GR PIR:S61838 PDB:1P6Q PDB:1P6U PDBsum:1P6Q
PDBsum:1P6U ProteinModelPortal:Q52884 SMR:Q52884 IntAct:Q52884
PATRIC:23630501 ProtClustDB:CLSK800134 EvolutionaryTrace:Q52884
Uniprot:Q52884
Length = 129
Score = 142 (55.0 bits), Expect = 8.8e-09, P = 8.8e-09
Identities = 40/114 (35%), Positives = 61/114 (53%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQY-EVTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++VL VDD T +L + L+ + ++T +K++ +N ++ LVISD +MP M
Sbjct: 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHH--LVISDFNMPKM 64
Query: 83 DGFKLLEHVGLE---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELK 133
DG LL+ V I+L+A GD LV K GA + L KP IE++K
Sbjct: 65 DGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMK 118
>TIGR_CMR|SO_3209 [details] [associations]
symbol:SO_3209 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:GHYDFLV
HSSP:P06143 RefSeq:NP_718764.1 ProteinModelPortal:Q8ECD4 SMR:Q8ECD4
GeneID:1170902 KEGG:son:SO_3209 PATRIC:23526102
ProtClustDB:CLSK907053 Uniprot:Q8ECD4
Length = 127
Score = 142 (55.0 bits), Expect = 8.8e-09, P = 8.8e-09
Identities = 37/123 (30%), Positives = 63/123 (51%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTV-TNQAVTALKMLRENRNNFDLVISDVHMPDM 82
M++L VDD T ++++N LR + T + TAL ML+ + +FD V++D +MP M
Sbjct: 5 MKILIVDDFSTMRRIIKNLLRDLGFNNTQEADDGSTALPMLQ--KGDFDFVVTDWNMPGM 62
Query: 83 DGFKLLEHVGLE---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139
G LL+ + + LPV+M++A + ++ G Y++KP LK +
Sbjct: 63 QGIDLLKAIRADDSLKHLPVLMVTAEAKREQIIAAAQAGVNGYVVKPFTAATLKEKLDKI 122
Query: 140 IRR 142
R
Sbjct: 123 FER 125
>UNIPROTKB|Q9AE24 [details] [associations]
symbol:rprY "Transcriptional regulatory protein RprY"
species:295405 "Bacteroides fragilis YCH46" [GO:0000160
"phosphorelay signal transduction system" evidence=NAS] [GO:0003677
"DNA binding" evidence=NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000160 eggNOG:COG0745 EMBL:S59000 EMBL:AP006841
GenomeReviews:AP006841_GR PIR:S33662 RefSeq:YP_101140.1
ProteinModelPortal:Q9AE24 GeneID:3084945 KEGG:bfr:BF3864
PATRIC:21053264 OMA:CVLDVMM ProtClustDB:CLSK823045 Uniprot:Q9AE24
Length = 236
Score = 155 (59.6 bits), Expect = 8.9e-09, P = 8.9e-09
Identities = 39/128 (30%), Positives = 67/128 (52%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
+R+L +DD +L +L+A Y + K +N+ +DL + DV MP D
Sbjct: 8 LRILLCEDDENLGMLLREYLQAKGYSAELYPDGEAGFKAFLKNK--YDLCVFDVMMPKKD 65
Query: 84 GFKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
GF L + V ++P+I L+A + +++G GA DY+ KP +EEL + ++RR
Sbjct: 66 GFTLAQEVRAANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAILRR 125
Query: 143 KKVGPKDQ 150
+ G K++
Sbjct: 126 VR-GKKNK 132
>TAIR|locus:2100880 [details] [associations]
symbol:AT3G04450 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002686
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR025756 InterPro:IPR017930
InterPro:IPR006447 Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294
IPI:IPI00540345 RefSeq:NP_187095.2 UniGene:At.40835
ProteinModelPortal:F4J3P7 SMR:F4J3P7 PRIDE:F4J3P7
EnsemblPlants:AT3G04450.1 GeneID:819601 KEGG:ath:AT3G04450
OMA:WPDWADQ Uniprot:F4J3P7
Length = 442
Score = 163 (62.4 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 36/73 (49%), Positives = 47/73 (64%)
Query: 207 STTQKKPRVVWTPELHRKFVGAVNQLG-VDKAVPKKILDLMNVEGLTRENVASHLQKFRL 265
S+ K R+ WTPELH FV A+NQLG ++A PK +L L+N GLT +V SHLQK+R
Sbjct: 233 SSMTSKQRMRWTPELHEAFVEAINQLGGSERATPKAVLKLINSPGLTVYHVKSHLQKYRT 292
Query: 266 --YLKRLSNETPQ 276
Y LS +T +
Sbjct: 293 ARYKPELSKDTEE 305
>TAIR|locus:2089260 [details] [associations]
symbol:AT3G13040 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0015996 "chlorophyll catabolic process"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002686 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AY050889 EMBL:AY096674
IPI:IPI00543771 RefSeq:NP_566442.1 RefSeq:NP_974298.1
UniGene:At.11993 ProteinModelPortal:Q949U2 SMR:Q949U2 STRING:Q949U2
PRIDE:Q949U2 EnsemblPlants:AT3G13040.1 EnsemblPlants:AT3G13040.2
GeneID:820490 KEGG:ath:AT3G13040 OMA:RIEEHAK
ProtClustDB:CLSN2688327 ArrayExpress:Q949U2 Genevestigator:Q949U2
Uniprot:Q949U2
Length = 449
Score = 163 (62.4 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 35/60 (58%), Positives = 42/60 (70%)
Query: 207 STTQKKPRVVWTPELHRKFVGAVNQL-GVDKAVPKKILDLMNVEGLTRENVASHLQKFRL 265
S +K R+ WTPELH FV AV +L G +KA PK + LMNVEGLT +V SHLQK+RL
Sbjct: 236 SAANQKSRMRWTPELHESFVKAVIKLEGPEKATPKAVKKLMNVEGLTIYHVKSHLQKYRL 295
>TAIR|locus:2115070 [details] [associations]
symbol:AT4G37180 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002687
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 IPI:IPI00537470
RefSeq:NP_849513.1 UniGene:At.4657 ProteinModelPortal:F4JRB0
SMR:F4JRB0 PRIDE:F4JRB0 EnsemblPlants:AT4G37180.2 GeneID:829872
KEGG:ath:AT4G37180 OMA:SCRNDET Uniprot:F4JRB0
Length = 363
Score = 161 (61.7 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 31/61 (50%), Positives = 47/61 (77%)
Query: 210 QKKPRVVWTPELHRKFVGAVNQLGVDK-AVPKKILDLMNVEGLTRENVASHLQKFRLYLK 268
+K+ R W+ ELHRKFV A+++LG + A PK+I DLM V+GLT + V SHLQK+R++++
Sbjct: 215 KKEQRRRWSQELHRKFVDALHRLGGPQVATPKQIRDLMKVDGLTNDEVKSHLQKYRMHIR 274
Query: 269 R 269
+
Sbjct: 275 K 275
>TIGR_CMR|BA_0996 [details] [associations]
symbol:BA_0996 "sensor histidine kinase/response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR003018 InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003660 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
Pfam:PF02518 Pfam:PF13185 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50885 SMART:SM00065 SMART:SM00304 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0005622
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 KO:K03407
HSSP:P52934 RefSeq:NP_843497.1 RefSeq:YP_017624.1
RefSeq:YP_027206.1 ProteinModelPortal:Q81U88 DNASU:1088076
EnsemblBacteria:EBBACT00000011936 EnsemblBacteria:EBBACT00000016656
EnsemblBacteria:EBBACT00000023286 GeneID:1088076 GeneID:2814798
GeneID:2849014 KEGG:ban:BA_0996 KEGG:bar:GBAA_0996 KEGG:bat:BAS0932
HOGENOM:HOG000084747 OMA:TNNVFQE ProtClustDB:CLSK916050
BioCyc:BANT260799:GJAJ-1010-MONOMER
BioCyc:BANT261594:GJ7F-1055-MONOMER InterPro:IPR007891 Pfam:PF05227
Uniprot:Q81U88
Length = 896
Score = 167 (63.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 33/113 (29%), Positives = 65/113 (57%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
++ VDDD + L+N L+ + + L++L+ N N DL++ D+ MP+MDG+
Sbjct: 778 IMIVDDDHRNIFALQNALKKQHANIITAQNGLECLEILKNN-TNIDLILMDIMMPNMDGY 836
Query: 86 KLLEHVGLEM---DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNI 135
+ +EH+ + + ++P+I L+A K ++ GA DY+ KP+ + +L ++
Sbjct: 837 ETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNLHQLYSV 889
>UNIPROTKB|Q9KUA1 [details] [associations]
symbol:VC_0622 "Sensory box sensor histidine
kinase/response regulator" species:243277 "Vibrio cholerae O1
biovar El Tor str. N16961" [GO:0000155 "phosphorelay sensor kinase
activity" evidence=ISS] [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0023014 "signal transduction
by phosphorylation" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003660 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF00672 Pfam:PF02518 Pfam:PF13188 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50885 SMART:SM00091 SMART:SM00304
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
GO:GO:0016021 GO:GO:0005524 GO:GO:0006355 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 HSSP:P08402 PIR:A82300
RefSeq:NP_230271.1 ProteinModelPortal:Q9KUA1 DNASU:2615410
GeneID:2615410 KEGG:vch:VC0622 PATRIC:20080353 OMA:SLYVSSQ
ProtClustDB:CLSK874044 Uniprot:Q9KUA1
Length = 1177
Score = 168 (64.2 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 50/159 (31%), Positives = 79/159 (49%)
Query: 3 AEERMGSAGCEDGDIDKFPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKM 62
A E + S E ++ + G +L DD+P L+VL++FLR Y V L+
Sbjct: 749 APEVLDSELPEQSNLPENEHGPLLLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEA 808
Query: 63 LRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMD---LPVIMLSAYGDTKLVMKGITHGA 119
++ R +LV+ D+ MP M G+++ E + D LP+IML+A + ++G GA
Sbjct: 809 IK--REKPELVLLDIMMPGMSGYQVCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGA 866
Query: 120 CDYLLKPVRIEELK-NIWQHVIRRKKVGPKDQNKLLNQE 157
DYL KP +EL I H+ K + +N L +E
Sbjct: 867 NDYLSKPFNKQELAARIVAHLTASKAELRRIENAQLQKE 905
>TIGR_CMR|VC_0622 [details] [associations]
symbol:VC_0622 "sensory box sensor histidine
kinase/response regulator" species:686 "Vibrio cholerae O1 biovar
El Tor" [GO:0000155 "phosphorelay sensor kinase activity"
evidence=ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR000014
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF00672 Pfam:PF02518 Pfam:PF13188
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50885 SMART:SM00091
SMART:SM00304 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0016021 GO:GO:0005524 GO:GO:0006355
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 HSSP:P08402 PIR:A82300
RefSeq:NP_230271.1 ProteinModelPortal:Q9KUA1 DNASU:2615410
GeneID:2615410 KEGG:vch:VC0622 PATRIC:20080353 OMA:SLYVSSQ
ProtClustDB:CLSK874044 Uniprot:Q9KUA1
Length = 1177
Score = 168 (64.2 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 50/159 (31%), Positives = 79/159 (49%)
Query: 3 AEERMGSAGCEDGDIDKFPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKM 62
A E + S E ++ + G +L DD+P L+VL++FLR Y V L+
Sbjct: 749 APEVLDSELPEQSNLPENEHGPLLLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEA 808
Query: 63 LRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMD---LPVIMLSAYGDTKLVMKGITHGA 119
++ R +LV+ D+ MP M G+++ E + D LP+IML+A + ++G GA
Sbjct: 809 IK--REKPELVLLDIMMPGMSGYQVCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGA 866
Query: 120 CDYLLKPVRIEELK-NIWQHVIRRKKVGPKDQNKLLNQE 157
DYL KP +EL I H+ K + +N L +E
Sbjct: 867 NDYLSKPFNKQELAARIVAHLTASKAELRRIENAQLQKE 905
>UNIPROTKB|Q8EF67 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
OMA:FDVTEAC RefSeq:NP_717723.1 ProteinModelPortal:Q8EF67
GeneID:1169863 KEGG:son:SO_2120 PATRIC:23523858
ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 140 (54.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 35/119 (29%), Positives = 63/119 (52%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L VDD +++E L++ Y+VT+ AL + R FD +++D +MP MDG
Sbjct: 4 KILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALDLCSSQR--FDFILTDQNMPRMDG 61
Query: 85 FKLLEHV-GLE--MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140
L++ + G+ M P+IML+ + +G GA +++KP ++L I V+
Sbjct: 62 LTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAVGATGWMVKPFDPQKLLAITAKVL 120
>UNIPROTKB|Q9KKK8 [details] [associations]
symbol:VC_A1096 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV
KO:K03413 HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1
ProteinModelPortal:Q9KKK8 DNASU:2612407 GeneID:2612407
KEGG:vch:VCA1096 PATRIC:20086710 ProtClustDB:CLSK789264
Uniprot:Q9KKK8
Length = 125
Score = 140 (54.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 38/119 (31%), Positives = 63/119 (52%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
+VLAVDD + +++ + L+ YEV AL ++ R FD++ISDV+MP M G
Sbjct: 9 KVLAVDDSISIRQMVSHTLQDAGYEVETAADGREALAKAQKAR--FDVIISDVNMPVMTG 66
Query: 85 FKLLEHVGLEMDL---PVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140
F+ ++ V ++ P++ML+ + +G GA +L+KP E L Q V+
Sbjct: 67 FEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRVL 125
>TIGR_CMR|CJE_1261 [details] [associations]
symbol:CJE_1261 "chemotaxis protein CheY" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413
OMA:DVLITDW ProtClustDB:CLSK872349 RefSeq:YP_179249.1
ProteinModelPortal:Q5HTY6 STRING:Q5HTY6 GeneID:3231768
KEGG:cjr:CJE1261 PATRIC:20044318
BioCyc:CJEJ195099:GJC0-1287-MONOMER Uniprot:Q5HTY6
Length = 130
Score = 140 (54.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 36/121 (29%), Positives = 67/121 (55%)
Query: 24 MRVLAVDDDPTCLKVLENFL-RACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
M++L VDD T ++++N L R +V V A +L +N + ++I+D +MP+M
Sbjct: 1 MKLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKNED-VKVLITDWNMPEM 59
Query: 83 DGFKLLEHVGLEM---DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139
+G +L++ V E D+P+IM++ G V+ + G +Y++KP + LK + V
Sbjct: 60 NGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEDV 119
Query: 140 I 140
+
Sbjct: 120 L 120
>TIGR_CMR|SO_2120 [details] [associations]
symbol:SO_2120 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 OMA:FDVTEAC RefSeq:NP_717723.1
ProteinModelPortal:Q8EF67 GeneID:1169863 KEGG:son:SO_2120
PATRIC:23523858 ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 140 (54.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 35/119 (29%), Positives = 63/119 (52%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L VDD +++E L++ Y+VT+ AL + R FD +++D +MP MDG
Sbjct: 4 KILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALDLCSSQR--FDFILTDQNMPRMDG 61
Query: 85 FKLLEHV-GLE--MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140
L++ + G+ M P+IML+ + +G GA +++KP ++L I V+
Sbjct: 62 LTLIKSLRGMSAFMRTPIIMLTTEAGDDMKAQGKAVGATGWMVKPFDPQKLLAITAKVL 120
>TIGR_CMR|VC_A1096 [details] [associations]
symbol:VC_A1096 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV KO:K03413
HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1 ProteinModelPortal:Q9KKK8
DNASU:2612407 GeneID:2612407 KEGG:vch:VCA1096 PATRIC:20086710
ProtClustDB:CLSK789264 Uniprot:Q9KKK8
Length = 125
Score = 140 (54.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 38/119 (31%), Positives = 63/119 (52%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
+VLAVDD + +++ + L+ YEV AL ++ R FD++ISDV+MP M G
Sbjct: 9 KVLAVDDSISIRQMVSHTLQDAGYEVETAADGREALAKAQKAR--FDVIISDVNMPVMTG 66
Query: 85 FKLLEHVGLEMDL---PVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140
F+ ++ V ++ P++ML+ + +G GA +L+KP E L Q V+
Sbjct: 67 FEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRVL 125
>UNIPROTKB|O69730 [details] [associations]
symbol:tcrX "Probable transcriptional regulatory protein
TcrX" species:1773 "Mycobacterium tuberculosis" [GO:0005515
"protein binding" evidence=IPI] [GO:0010106 "cellular response to
iron ion starvation" evidence=IEP] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0006355
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677 EMBL:BX842584
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0010106
HOGENOM:HOG000034815 HSSP:Q9WYN0 KO:K02483 EMBL:X99370 PIR:F70801
RefSeq:NP_218282.1 RefSeq:YP_006517260.1 ProteinModelPortal:O69730
SMR:O69730 EnsemblBacteria:EBMYCT00000002612 GeneID:13317384
GeneID:886100 KEGG:mtu:Rv3765c KEGG:mtv:RVBD_3765c PATRIC:18156979
TubercuList:Rv3765c OMA:TELLSMA ProtClustDB:CLSK792706
Uniprot:O69730
Length = 234
Score = 153 (58.9 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 42/130 (32%), Positives = 66/130 (50%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
VL VDD+P +++ LR + +T +A+ R R D+V+ DV +PDM G
Sbjct: 11 VLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRP--DVVVLDVMLPDMSGL 68
Query: 86 KLLEHVGLEMD-LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144
+L + E LPV++L+A + + G+T G DY+ KP IEE+ + ++RR
Sbjct: 69 DVLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVVLRLRALLRRTG 128
Query: 145 VGPKDQNKLL 154
V D L
Sbjct: 129 VTTVDSGAQL 138
>TAIR|locus:2045761 [details] [associations]
symbol:AT2G01060 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0006499 "N-terminal protein myristoylation"
evidence=RCA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 HOGENOM:HOG000239390
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC006837
EMBL:AF370550 EMBL:AY084725 EMBL:BT000013 IPI:IPI00544604
PIR:B84420 RefSeq:NP_178216.1 UniGene:At.24449
ProteinModelPortal:Q9SJW0 SMR:Q9SJW0 EnsemblPlants:AT2G01060.1
GeneID:814630 KEGG:ath:AT2G01060 TAIR:At2g01060 eggNOG:NOG329415
InParanoid:Q9SJW0 OMA:TNELHER PhylomeDB:Q9SJW0
ProtClustDB:CLSN2683513 ArrayExpress:Q9SJW0 Genevestigator:Q9SJW0
Uniprot:Q9SJW0
Length = 286
Score = 157 (60.3 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 37/70 (52%), Positives = 47/70 (67%)
Query: 207 STTQKKPRVVWTPELHRKFVGAVNQLG-VDKAVPKKILDLMNVEGLTRENVASHLQKFRL 265
S+ K R+ WT ELH +FV AV QLG D+A PK +L +M V+GLT +V SHLQK+RL
Sbjct: 10 SSHASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 69
Query: 266 --YLKRLSNE 273
YL S+E
Sbjct: 70 AKYLPDSSSE 79
>TAIR|locus:2026739 [details] [associations]
symbol:AT1G69580 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002684 GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HOGENOM:HOG000239390
InterPro:IPR025756 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 EMBL:AC021046 IPI:IPI00846148
RefSeq:NP_001077798.1 UniGene:At.52449 ProteinModelPortal:A8MSE5
SMR:A8MSE5 PRIDE:A8MSE5 EnsemblPlants:AT1G69580.2 GeneID:843294
KEGG:ath:AT1G69580 TAIR:At1g69580 eggNOG:NOG249461 OMA:MEINNNA
PhylomeDB:A8MSE5 ProtClustDB:CLSN2699064 ArrayExpress:A8MSE5
Genevestigator:A8MSE5 Uniprot:A8MSE5
Length = 337
Score = 159 (61.0 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 31/59 (52%), Positives = 43/59 (72%)
Query: 208 TTQKKPRVVWTPELHRKFVGAVNQLG-VDKAVPKKILDLMNVEGLTRENVASHLQKFRL 265
+T KPR+ WT +LH KF+ AVNQLG +KA PK ++ +M + GLT ++ SHLQK+RL
Sbjct: 30 STDAKPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKYRL 88
>TIGR_CMR|BA_0571 [details] [associations]
symbol:BA_0571 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
HOGENOM:HOG000034815 HSSP:P08402 RefSeq:NP_843105.1
RefSeq:YP_017194.1 RefSeq:YP_026818.1 ProteinModelPortal:Q81YR2
DNASU:1087909 EnsemblBacteria:EBBACT00000010289
EnsemblBacteria:EBBACT00000017976 EnsemblBacteria:EBBACT00000019549
GeneID:1087909 GeneID:2816056 GeneID:2852340 KEGG:ban:BA_0571
KEGG:bar:GBAA_0571 KEGG:bat:BAS0540 OMA:TQQTIRY
ProtClustDB:CLSK915864 BioCyc:BANT260799:GJAJ-600-MONOMER
BioCyc:BANT261594:GJ7F-626-MONOMER Uniprot:Q81YR2
Length = 223
Score = 151 (58.2 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 38/121 (31%), Positives = 70/121 (57%)
Query: 24 MRVLAVDDDPTCLKVLENFLRAC-QYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
MR+L V+D+ + L+ + L C ++EV L + +N +D ++ DV MP+M
Sbjct: 1 MRLLVVEDNASLLESIVQIL--CDEFEVDTALNGEDGLFLALQNI--YDAILLDVMMPEM 56
Query: 83 DGFKLLEHVGLE-MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141
DGF++++ + E ++ PV+ L+A + +KG+ G DY++KP + ELK + ++R
Sbjct: 57 DGFEVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLR 116
Query: 142 R 142
R
Sbjct: 117 R 117
>TIGR_CMR|CPS_1520 [details] [associations]
symbol:CPS_1520 "chemotaxis protein CheY" species:167879
"Colwellia psychrerythraea 34H" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 OMA:LEANDIY
KO:K03413 RefSeq:YP_268262.1 ProteinModelPortal:Q485K3 SMR:Q485K3
STRING:Q485K3 GeneID:3522501 KEGG:cps:CPS_1520 PATRIC:21466247
BioCyc:CPSY167879:GI48-1601-MONOMER Uniprot:Q485K3
Length = 127
Score = 139 (54.0 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 36/123 (29%), Positives = 63/123 (51%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQY-EVTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
M+VL VDD T ++++N LR + + + TAL ML+ +FD V++D +MP M
Sbjct: 5 MKVLVVDDFSTMRRIVKNLLRDLGFTNIQEADDGNTALPMLQGG--DFDFVVTDWNMPGM 62
Query: 83 DGFKLLEHVGLEMDL---PVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139
G LL+ + + +L PV++++A + ++ G Y++KP LK +
Sbjct: 63 QGIDLLKAIRADANLSHIPVLLITAEAKKEQIIMAAQAGVNGYIVKPFTAATLKTKLDKI 122
Query: 140 IRR 142
R
Sbjct: 123 FER 125
>TIGR_CMR|GSU_1286 [details] [associations]
symbol:GSU_1286 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 RefSeq:NP_952339.1
ProteinModelPortal:Q74DN0 GeneID:2686542 KEGG:gsu:GSU1286
PATRIC:22025343 OMA:CMDIMMP ProtClustDB:CLSK2522233
BioCyc:GSUL243231:GH27-1254-MONOMER Uniprot:Q74DN0
Length = 131
Score = 138 (53.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 41/128 (32%), Positives = 67/128 (52%)
Query: 24 MRVLAVDDDPTCLKVLENFLRAC-QYEV-TVTNQAVTALKMLRENRNNFDLVISDVHMPD 81
M+ L V+DD K+++ L + + ++ T +AV A ++ + +DLV D+ MP+
Sbjct: 1 MKTLIVEDDFISRKIMKELLTSLGECDIATDGEEAVQAFRLALDEHRPYDLVCMDIMMPN 60
Query: 82 MDGFKLLEHV-------GLE--MDLPVIMLSAYGDTKLVMKGITHG-ACDYLLKPVRIEE 131
MDG + LE + GL ++ VIM +A D K V++ G A YL+KP+ +
Sbjct: 61 MDGHEALEQIREIERGMGLNGAQEVKVIMTTALDDPKNVVEAFYRGGATSYLVKPITKQR 120
Query: 132 L-KNIWQH 138
L K I H
Sbjct: 121 LMKEIRSH 128
>TIGR_CMR|GSU_2581 [details] [associations]
symbol:GSU_2581 "sigma-54 dependent transcriptional
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025944 PROSITE:PS00688 HSSP:P06143 RefSeq:NP_953627.1
ProteinModelPortal:Q74A10 GeneID:2687775 KEGG:gsu:GSU2581
PATRIC:22028017 OMA:LTERIMA ProtClustDB:CLSK763211
BioCyc:GSUL243231:GH27-2558-MONOMER Uniprot:Q74A10
Length = 456
Score = 160 (61.4 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 41/117 (35%), Positives = 63/117 (53%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++LAVDDD L +LEN L + AL +L R + DL+ISD+ M M+G
Sbjct: 5 KILAVDDDELSLLMLENLLADAGFAPLTAVSGAQALALLE--REHVDLLISDLIMEGMNG 62
Query: 85 FKLLEHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140
+LL+ V ++PVI+++A G + ++ + GA DYL KP E L+ Q +
Sbjct: 63 LELLDRVRERYPNVPVIVVTARGSVESAVEAMRRGAYDYLAKPFNPEVLRITLQRAL 119
>TIGR_CMR|GSU_1320 [details] [associations]
symbol:GSU_1320 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K02481
HSSP:P06143 RefSeq:NP_952373.2 GeneID:2686471 KEGG:gsu:GSU1320
PATRIC:22025417 ProtClustDB:CLSK828298
BioCyc:GSUL243231:GH27-1307-MONOMER Uniprot:Q74DJ6
Length = 461
Score = 160 (61.4 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 39/110 (35%), Positives = 60/110 (54%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
RVL VDDD + +VLE L+ Y+V L++ E LV++D+ MP M G
Sbjct: 10 RVLIVDDDVSLRRVLEYNLQEEGYDVITAGSGEEGLRLFDERSPA--LVVTDLKMPGMGG 67
Query: 85 FKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELK 133
F+LL+ + G D VI+++A+G + + + GA DY+ KP + LK
Sbjct: 68 FRLLQEIKGRSPDTAVIVITAFGAVETAVDAMKAGAYDYITKPFNRDALK 117
>UNIPROTKB|Q0J235 [details] [associations]
symbol:RL9 "Probable transcription factor RL9"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IDA] [GO:0010158 "abaxial cell fate specification"
evidence=IMP] [GO:0010229 "inflorescence development" evidence=IMP]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AP008215 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0010158 GO:GO:0010229
eggNOG:NOG330873 HOGENOM:HOG000241649 EMBL:AP005904 EMBL:FJ268747
EMBL:FJ268748 RefSeq:NP_001063097.1 UniGene:Os.5597 PRIDE:Q0J235
GeneID:4346973 KEGG:osa:4346973 Gramene:Q0J235 OMA:DALPWRH
ProtClustDB:CLSN2697690 Uniprot:Q0J235
Length = 532
Score = 161 (61.7 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 61/207 (29%), Positives = 95/207 (45%)
Query: 209 TQKKPRVVWTPELHRKFVGAVNQLGV-DKAVPKKILDLMNVEGLTRENVASHLQKFRLYL 267
+ + PR+ WT LH +FV AV LG ++A PK +L+LM+V+ LT +V SHLQ +R +
Sbjct: 321 SMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT-V 379
Query: 268 KRLSNETPQAGMVAALGSKDSSYLRIG-ALDGFGDLRSLNSPGRLSSSAISSSYVPGNMF 326
K +G GS D + G A G GD L G ++++
Sbjct: 380 KSTDKPAASSGPADG-GSGDEEFAGGGQAASGGGDSMCLRGGG--GGGVAAAAFAE---H 433
Query: 327 GRFNSTSGLSMHGIASSGMIQPGHSQSFNTSFNTIGKIQQAMFPANRISNL--FQGVRTS 384
GR S S G G + S + NTS + + ++ N+ + V S
Sbjct: 434 GRSASEGAASSVGGGGGGDMD--QSSAGNTSTTRWSNSSRDPWLSSNSCNMDAHRSVGLS 491
Query: 385 SELNQL-PQSKSTTQIGDFNH-INSPT 409
S + L P S++Q+ NH ++SP+
Sbjct: 492 SPIENLEPCRSSSSQVS--NHELSSPS 516
>UNIPROTKB|Q06065 [details] [associations]
symbol:atoC "AtoC transcriptional activator; Az protein
inhibitor of ODC" species:83333 "Escherichia coli K-12" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0035556 "intracellular
signal transduction" evidence=IEA] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS;IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0005737 GO:GO:0045893 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG2204 EMBL:U17902 EMBL:L13078 PIR:B64992
RefSeq:NP_416724.1 RefSeq:YP_490461.1 ProteinModelPortal:Q06065
SMR:Q06065 DIP:DIP-9190N IntAct:Q06065 PRIDE:Q06065
EnsemblBacteria:EBESCT00000003393 EnsemblBacteria:EBESCT00000015461
GeneID:12932980 GeneID:947444 KEGG:ecj:Y75_p2183 KEGG:eco:b2220
PATRIC:32119799 EchoBASE:EB1619 EcoGene:EG11668
HOGENOM:HOG000058489 KO:K07714 OMA:EERRIIM ProtClustDB:PRK11361
BioCyc:EcoCyc:ATOC-MONOMER BioCyc:ECOL316407:JW2214-MONOMER
Genevestigator:Q06065 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
Uniprot:Q06065
Length = 461
Score = 167 (63.8 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 40/133 (30%), Positives = 72/133 (54%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
R+L VDD+ ++L +E N TAL + + D+V+ D+ MP+MDG
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHP--DVVLMDIRMPEMDG 63
Query: 85 FKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143
K L+ + E PVI+++AY + + ++ + GA DY++KP ++EL I Q ++ +
Sbjct: 64 IKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123
Query: 144 KVGPKDQNKLLNQ 156
+ K + + L+Q
Sbjct: 124 SM--KKEIRHLHQ 134
Score = 37 (18.1 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 18/71 (25%), Positives = 28/71 (39%)
Query: 214 RVVWTPELHRKFVGAVNQLGVDK---AVPKKILDLMNVEGLTRENVASHLQKFRLYLKRL 270
R++ E R +G + VD A + L M EG RE++ L L L L
Sbjct: 259 RILQEREFER--IGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPL 316
Query: 271 SNETPQAGMVA 281
+ ++A
Sbjct: 317 RDRREDISLLA 327
>TIGR_CMR|CJE_1664 [details] [associations]
symbol:CJE_1664 "DNA-binding response regulator"
species:195099 "Campylobacter jejuni RM1221" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 RefSeq:YP_179645.1 ProteinModelPortal:Q5HSU0
STRING:Q5HSU0 GeneID:3232292 KEGG:cjr:CJE1664 PATRIC:20045123
OMA:KRNICEL ProtClustDB:CLSK879286
BioCyc:CJEJ195099:GJC0-1694-MONOMER Uniprot:Q5HSU0
Length = 226
Score = 150 (57.9 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 37/119 (31%), Positives = 64/119 (53%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L V+D+ + + N L +V LK ++ + DLVI+D+ MP MDG
Sbjct: 10 ILVVEDEVKARESMINILSERFSKVIGAQNGDEGLKKFKKFKP--DLVITDIAMPIMDGL 67
Query: 86 KLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143
+ + + D+P+++LSAY + + +++ I G YL+KPV IEEL + ++I K
Sbjct: 68 DMAREIKEISDDVPIVVLSAYSEKERLLRSIDIGIDKYLIKPVDIEELFKVLDYLIGEK 126
>TIGR_CMR|DET_1058 [details] [associations]
symbol:DET_1058 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0005622 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 KO:K02483 RefSeq:YP_181773.1
ProteinModelPortal:Q3Z7M6 STRING:Q3Z7M6 GeneID:3229632
KEGG:det:DET1058 PATRIC:21609161 OMA:ISGWDVC ProtClustDB:CLSK837116
BioCyc:DETH243164:GJNF-1059-MONOMER Uniprot:Q3Z7M6
Length = 227
Score = 150 (57.9 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 38/130 (29%), Positives = 69/130 (53%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L DD+ ++L+ +L ++V+VT AL RE N DL+I D+ +P++ G
Sbjct: 4 KILIADDENKIAEILKAYLEREGFKVSVTYNGKEALAKFREE--NPDLIILDLMLPEISG 61
Query: 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144
+ + + E +P+IML+A + + G+ GA DY+ KP +EL + +RR +
Sbjct: 62 WDVCREIRKESRVPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELVARAKVQLRRSE 121
Query: 145 VGPKDQNKLL 154
P + L+
Sbjct: 122 HTPASEPVLV 131
>TIGR_CMR|CJE_1358 [details] [associations]
symbol:CJE_1358 "DNA-binding response regulator"
species:195099 "Campylobacter jejuni RM1221" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 PIR:A81329 RefSeq:YP_179345.1
ProteinModelPortal:Q5HTP0 STRING:Q5HTP0 GeneID:3231864
KEGG:cjr:CJE1358 PATRIC:20044514 OMA:ACIFEEI ProtClustDB:CLSK879148
BioCyc:CJEJ195099:GJC0-1384-MONOMER Uniprot:Q5HTP0
Length = 221
Score = 141 (54.7 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 37/109 (33%), Positives = 57/109 (52%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L ++DD + +++E FL YEV + + A AL M E FDL I DV +P DG
Sbjct: 4 KILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYERY--FDLWILDVKVPLGDG 61
Query: 85 FKLLEHVGLE-MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
F LL+ + P I +++ T + +G G DY+ KP + EL
Sbjct: 62 FSLLKELRKSGKQTPAIFMTSLNTTNDLKQGFDAGCDDYIKKPFELAEL 110
Score = 46 (21.3 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 454 YGNQSSLSVASLNQESFDVGVRNSSNFLDHSRC-NESWQDAVQLSSNSL 501
Y N +L++ S + + ++N +NFL R E W + S SL
Sbjct: 146 YHNNKALTLPSKEIKLLSLLLKNKNNFLSTERIFEELWDYDEEPSELSL 194
>UNIPROTKB|Q45976 [details] [associations]
symbol:divK "Cell division response regulator DivK"
species:155892 "Caulobacter vibrioides" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0051301 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:U13765 PIR:S58671 HSSP:Q9A5I4
ProteinModelPortal:Q45976 SMR:Q45976 DIP:DIP-46001N IntAct:Q45976
Uniprot:Q45976
Length = 125
Score = 137 (53.3 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 35/124 (28%), Positives = 66/124 (53%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
+VL V+D+ +K+ + L A YE T + ++AL + REN+ DL++ D+ +P++ G
Sbjct: 4 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKP--DLILMDIQLPEISG 61
Query: 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKG----ITHGACD-YLLKPVRIEELKNIWQHV 139
++ + + + DL I + A T MKG I G C+ Y+ KP+ + + +
Sbjct: 62 LEVTKWLKEDDDLAHIPVVAV--TAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRL 119
Query: 140 IRRK 143
+ R+
Sbjct: 120 LERQ 123
>TIGR_CMR|CJE_1397 [details] [associations]
symbol:CJE_1397 "DNA-binding response regulator"
species:195099 "Campylobacter jejuni RM1221" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 KO:K02483 RefSeq:YP_179383.1
ProteinModelPortal:Q5HTK2 STRING:Q5HTK2 GeneID:3231903
KEGG:cjr:CJE1397 PATRIC:20044596 OMA:CREIREK ProtClustDB:CLSK879174
BioCyc:CJEJ195099:GJC0-1424-MONOMER Uniprot:Q5HTK2
Length = 223
Score = 149 (57.5 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 38/132 (28%), Positives = 67/132 (50%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
+ VL ++DDP ++L +L Q+ + +TN L +D +I D+ +P +D
Sbjct: 2 INVLMIEDDPDFAQLLSEYL--AQFNIKITNFE-NPKSALNVGIQGYDCLILDLTLPGID 58
Query: 84 GFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143
G ++ + + ++P+I+ SA GD + G+ GA DYL KP +E+ +IRR
Sbjct: 59 GLEVCREIRQKSNIPIIISSARGDLSDKVVGLQIGADDYLPKPYDPKEMYARIMSLIRRT 118
Query: 144 KVGPKDQNKLLN 155
K N+ +N
Sbjct: 119 KRVEHTNNENIN 130
>TIGR_CMR|GSU_0776 [details] [associations]
symbol:GSU_0776 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_951833.1 ProteinModelPortal:Q74F33 GeneID:2685232
KEGG:gsu:GSU0776 PATRIC:22024313 OMA:KELPIWR ProtClustDB:CLSK828021
BioCyc:GSUL243231:GH27-778-MONOMER Uniprot:Q74F33
Length = 465
Score = 159 (61.0 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 38/138 (27%), Positives = 72/138 (52%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRN-NFDLVISDVHMPDMD 83
++L DD+ + L+ +A ++EV + L + + + D+++ DV MPDMD
Sbjct: 5 KILICDDEEGIRRYLQKMFQAKEFEVETFADGTSLLARIEAGTDGDADILLQDVRMPDMD 64
Query: 84 GFKLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
G ++L+ V L LPV++++A+G + I GA DY+ KP E++ + + +
Sbjct: 65 GIEVLKRVKKLRPSLPVVVMTAFGTIDSAVDAIKLGAYDYVTKPFPREKILGVIDNALEL 124
Query: 143 KKVGPKDQNKLLNQENSR 160
+ +NK L +E +R
Sbjct: 125 DLL--MKENKALKEELAR 140
>TIGR_CMR|GSU_2574 [details] [associations]
symbol:GSU_2574 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 RefSeq:NP_953620.1
ProteinModelPortal:Q74A17 GeneID:2686365 KEGG:gsu:GSU2574
PATRIC:22028001 KO:K07814 OMA:HTRRISE ProtClustDB:CLSK746108
BioCyc:GSUL243231:GH27-2551-MONOMER Uniprot:Q74A17
Length = 368
Score = 157 (60.3 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 48/140 (34%), Positives = 77/140 (55%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
VL VDD+ ++L L +T N + AL++L +N + DL++ D+ MP+++GF
Sbjct: 7 VLVVDDEEMNRELLSVMLDGLATPITAQN-GLEALRVLDKN-SAIDLILLDLEMPELNGF 64
Query: 86 KLLEHVG---LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELK-NIWQHVIR 141
L + L D+PVI+L+A D V + + GA D+L KP EEL+ + HV
Sbjct: 65 ATLATLKKHPLWCDIPVIVLTASKDE--VTRTLRLGANDFLAKPYDTEELRLRVMNHVRA 122
Query: 142 RKKVG-PKDQNKLLNQENSR 160
+K V +D N +L +E +R
Sbjct: 123 KKLVDLSQDVNGILEREVAR 142
>TAIR|locus:2038957 [details] [associations]
symbol:AT2G20400 "AT2G20400" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009555 "pollen development" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0009555 GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:BT006119
EMBL:AK118313 IPI:IPI00521384 RefSeq:NP_179630.2 UniGene:At.43867
ProteinModelPortal:Q8GXC2 SMR:Q8GXC2 PaxDb:Q8GXC2 PRIDE:Q8GXC2
EnsemblPlants:AT2G20400.1 GeneID:816559 KEGG:ath:AT2G20400
TAIR:At2g20400 eggNOG:NOG265443 HOGENOM:HOG000064669
InParanoid:Q8GXC2 OMA:ANSMENR PhylomeDB:Q8GXC2
ProtClustDB:CLSN2918042 Genevestigator:Q8GXC2 Uniprot:Q8GXC2
Length = 397
Score = 157 (60.3 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 37/69 (53%), Positives = 46/69 (66%)
Query: 212 KPRVVWTPELHRKFVGAVNQLG-VDKAVPKKILDLMNVEGLTRENVASHLQKFRL--YLK 268
K R+ WTPELH FV AVNQLG ++A PK +L M VEGLT +V SHLQK+R Y+
Sbjct: 231 KGRMRWTPELHEVFVDAVNQLGGSNEATPKGVLKHMKVEGLTIFHVKSHLQKYRTAKYIP 290
Query: 269 RLSNETPQA 277
S +P+A
Sbjct: 291 VPSEGSPEA 299
>TIGR_CMR|BA_0287 [details] [associations]
symbol:BA_0287 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_842837.1 RefSeq:YP_016897.1 RefSeq:YP_026554.1
ProteinModelPortal:Q81VC5 DNASU:1085878
EnsemblBacteria:EBBACT00000011028 EnsemblBacteria:EBBACT00000016417
EnsemblBacteria:EBBACT00000022481 GeneID:1085878 GeneID:2819460
GeneID:2851280 KEGG:ban:BA_0287 KEGG:bar:GBAA_0287 KEGG:bat:BAS0273
OMA:NYNLVIL ProtClustDB:CLSK917934
BioCyc:BANT260799:GJAJ-313-MONOMER
BioCyc:BANT261594:GJ7F-322-MONOMER Uniprot:Q81VC5
Length = 237
Score = 150 (57.9 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 37/119 (31%), Positives = 65/119 (54%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
+R+L DDD +L+ +L Y V AL++ N+NN+ +VI D+ MP +D
Sbjct: 4 IRILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLF--NQNNYSIVILDLMMPKVD 61
Query: 84 GFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
G ++ + + ++P++ML+A + G++ GA DY+ KP I E+ + +IRR
Sbjct: 62 GIEVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRR 120
>TIGR_CMR|SO_4718 [details] [associations]
symbol:SO_4718 "sigma-54 dependent response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
RefSeq:NP_720234.1 HSSP:P10958 ProteinModelPortal:Q8E8E7
GeneID:1172297 KEGG:son:SO_4718 PATRIC:23529099 OMA:GYADMDV
ProtClustDB:CLSK907789 Uniprot:Q8E8E7
Length = 460
Score = 158 (60.7 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 41/149 (27%), Positives = 77/149 (51%)
Query: 14 DGDIDKFPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLV 73
D ++ P + VL VDD+P L L ++ + T ++ + LR +R +FDL+
Sbjct: 5 DNNLKPLPSAVSVLIVDDEPGMRSFLNKALSK-KFALVETAGSIEDAEQLR-SRCHFDLL 62
Query: 74 ISDVHMPDMDGFK---LLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIE 130
I D+ +P G + L+ G D VI ++ Y D ++ +K + GA D+++KP +E
Sbjct: 63 IVDIRLPGRSGIEWSEALDEQGRRSD--VIFMTGYADLEVAIKALRAGASDFIMKPFHLE 120
Query: 131 ELKNIWQHVIRRKKVGPKDQNKLLNQENS 159
++ + I R+ + + +N +L +E S
Sbjct: 121 QMMSAVDRCIERRLL--RRENLMLRREVS 147
>TIGR_CMR|BA_5581 [details] [associations]
symbol:BA_5581 "stage 0 sporulation protein F"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0030436 "asexual sporulation" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0016740 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K02490
ProtClustDB:CLSK873695 RefSeq:NP_847737.1 RefSeq:YP_022251.1
RefSeq:YP_031424.1 HSSP:P06628 ProteinModelPortal:Q81JW3 SMR:Q81JW3
DNASU:1085276 EnsemblBacteria:EBBACT00000010293
EnsemblBacteria:EBBACT00000016210 EnsemblBacteria:EBBACT00000023627
GeneID:1085276 GeneID:2814845 GeneID:2853145 KEGG:ban:BA_5581
KEGG:bar:GBAA_5581 KEGG:bat:BAS5185 OMA:EADGAMD
BioCyc:BANT260799:GJAJ-5260-MONOMER
BioCyc:BANT261594:GJ7F-5440-MONOMER Uniprot:Q81JW3
Length = 122
Score = 135 (52.6 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 31/110 (28%), Positives = 61/110 (55%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L VDD +L + Y+ AL +++ ++N DLV+ D+ +P MDG
Sbjct: 4 KILIVDDQYGIRVLLHEVFQKEGYQTFQAANGFQALDIVK--KDNPDLVVLDMKIPGMDG 61
Query: 85 FKLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELK 133
++L+HV ++ + VI+++AYG+ ++ + GA + KP I+E++
Sbjct: 62 IEILKHVKEIDESIKVILMTAYGELDMIQEAKDLGALMHFAKPFDIDEIR 111
>TIGR_CMR|BA_1119 [details] [associations]
symbol:BA_1119 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_843605.1 RefSeq:YP_017739.1 RefSeq:YP_027312.1
ProteinModelPortal:Q81TY2 DNASU:1089077
EnsemblBacteria:EBBACT00000010696 EnsemblBacteria:EBBACT00000017772
EnsemblBacteria:EBBACT00000019871 GeneID:1089077 GeneID:2819546
GeneID:2850009 KEGG:ban:BA_1119 KEGG:bar:GBAA_1119 KEGG:bat:BAS1040
OMA:EIDQHSA ProtClustDB:CLSK916099
BioCyc:BANT260799:GJAJ-1116-MONOMER
BioCyc:BANT261594:GJ7F-1167-MONOMER Uniprot:Q81TY2
Length = 234
Score = 149 (57.5 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 39/128 (30%), Positives = 65/128 (50%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
+L VDD+ L++L L + +T A AL + ++N ++DL+I DV +P G
Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQN--DYDLIILDVMLPGQSG 63
Query: 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR-- 142
F + + + D P+ L+A + G +HGA DY+ KP E+ + +RR
Sbjct: 64 FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123
Query: 143 KKVGPKDQ 150
K+V P +Q
Sbjct: 124 KQVMPHEQ 131
>TIGR_CMR|GSU_1129 [details] [associations]
symbol:GSU_1129 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_952182.1 ProteinModelPortal:Q74E35 GeneID:2687644
KEGG:gsu:GSU1129 PATRIC:22025020 OMA:YEFANII ProtClustDB:CLSK828199
BioCyc:GSUL243231:GH27-1139-MONOMER Uniprot:Q74E35
Length = 453
Score = 157 (60.3 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 35/122 (28%), Positives = 66/122 (54%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L +DD+ T + L L+A + V A + L R+ FD+VI+D+ +PD G
Sbjct: 6 KILLIDDEETGREALTLLLKAAGHAVKSAGAGSEAFQTL--TRDTFDIVITDLFLPDASG 63
Query: 85 FKLLEHVGLEMDLP-VIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143
+L+ V + L VI+++ + + +K + GA DY+ KP+ +ELK I + ++
Sbjct: 64 IDILKKVKEDAPLTEVILITGHASAETAVKAMKEGAFDYITKPLNFDELKIIIGKAVEKR 123
Query: 144 KV 145
++
Sbjct: 124 QL 125
>TIGR_CMR|BA_4833 [details] [associations]
symbol:BA_4833 "DNA-binding response regulator PhoP"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0006796
"phosphate-containing compound metabolic process" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402 KO:K07658
RefSeq:NP_847036.1 RefSeq:YP_021478.1 RefSeq:YP_030731.1
ProteinModelPortal:Q81L01 SMR:Q81L01 DNASU:1086976
EnsemblBacteria:EBBACT00000010602 EnsemblBacteria:EBBACT00000014654
EnsemblBacteria:EBBACT00000019808 GeneID:1086976 GeneID:2814633
GeneID:2851563 KEGG:ban:BA_4833 KEGG:bar:GBAA_4833 KEGG:bat:BAS4484
OMA:LYLGRHK ProtClustDB:CLSK887707
BioCyc:BANT260799:GJAJ-4541-MONOMER
BioCyc:BANT261594:GJ7F-4695-MONOMER Uniprot:Q81L01
Length = 239
Score = 149 (57.5 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 41/136 (30%), Positives = 71/136 (52%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
R+L VDD+ L ++E L+ +EV AL+ R DL+I D+ +P MDG
Sbjct: 4 RILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERP--DLIILDLMLPKMDG 61
Query: 85 FKLLEHVGLEMDL-PVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143
++ + + L+ + P++ML+A D + G+ GA DY+ KP E+ + ++RR
Sbjct: 62 MEVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRT 121
Query: 144 KVGPKDQNKLLNQENS 159
K+ ++Q + E S
Sbjct: 122 KLQQEEQVTETSDEES 137
>TAIR|locus:2025911 [details] [associations]
symbol:ARR3 "response regulator 3" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IDA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IDA;TAS] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=TAS] [GO:0010114
"response to red light" evidence=IMP] [GO:0010161 "red light
signaling pathway" evidence=IMP] [GO:0007623 "circadian rhythm"
evidence=IMP] [GO:0042752 "regulation of circadian rhythm"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0007623 GO:GO:0006351 GO:GO:0042752 EMBL:AC007258
GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008486 IPI:IPI00532280
PIR:T50853 RefSeq:NP_176202.1 UniGene:At.237
ProteinModelPortal:Q9ZWS9 SMR:Q9ZWS9 IntAct:Q9ZWS9 STRING:Q9ZWS9
EnsemblPlants:AT1G59940.1 GeneID:842288 KEGG:ath:AT1G59940
GeneFarm:4120 TAIR:At1g59940 eggNOG:COG3706 InParanoid:Q9ZWS9
OMA:RSEMIGI PhylomeDB:Q9ZWS9 ProtClustDB:CLSN2912722
Genevestigator:Q9ZWS9 GermOnline:AT1G59940 GO:GO:0010161
Uniprot:Q9ZWS9
Length = 231
Score = 148 (57.2 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 44/155 (28%), Positives = 79/155 (50%)
Query: 15 GDIDKFPIG---MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKML-------- 63
G+++ P+ + VLAVDD V+E LR +VT + AL+ L
Sbjct: 21 GELESPPLDSDQVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDDDKAA 80
Query: 64 -RENRNNFDLVISDVHMPDMDGFKLLEHVGLEM---DLPVIMLSAYGDTKLVMKGITHGA 119
+R DL+I+D MP M G++LL+ + ++PV+++S+ + + + GA
Sbjct: 81 VEFDRLKVDLIITDYCMPGMTGYELLKKIKESTSFKEVPVVIMSSENVMTRIDRCLEEGA 140
Query: 120 CDYLLKPVRIEELKNIWQHVIRRKKVGPKDQNKLL 154
D+LLKPV++ ++K + ++ R KV + + L
Sbjct: 141 EDFLLKPVKLADVKRLRSYLTRDVKVAAEGNKRKL 175
>TAIR|locus:2204518 [details] [associations]
symbol:AT1G14600 "AT1G14600" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AC010657 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AJ630486 EMBL:AY568658
IPI:IPI00523105 RefSeq:NP_172912.3 UniGene:At.41962
ProteinModelPortal:Q700D9 SMR:Q700D9 EnsemblPlants:AT1G14600.1
GeneID:838022 KEGG:ath:AT1G14600 TAIR:At1g14600 eggNOG:NOG329381
HOGENOM:HOG000239342 InParanoid:Q700D9 OMA:NIMNMER
Genevestigator:Q700D9 Uniprot:Q700D9
Length = 255
Score = 150 (57.9 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 31/53 (58%), Positives = 39/53 (73%)
Query: 213 PRVVWTPELHRKFVGAVNQLGVD-KAVPKKILDLMNVEGLTRENVASHLQKFR 264
PR+ WTPELHR FV AV+ LG KA PK +L +M+V+GLT +V SHLQ +R
Sbjct: 24 PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYR 76
>UNIPROTKB|Q74AX6 [details] [associations]
symbol:cheY40H-1 "Response receiver CheY associated with
MCPs of class 40H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6 GeneID:2685646
KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV ProtClustDB:CLSK828765
BioCyc:GSUL243231:GH27-2170-MONOMER Uniprot:Q74AX6
Length = 121
Score = 134 (52.2 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 34/115 (29%), Positives = 65/115 (56%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQ-YEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
R+L +D T +L +++ +EV + AL++L R DL+I+D++MPD++
Sbjct: 3 RILIAEDSATMRSMLVATIQSLDGFEVVEASSGFEALRLLPRER--LDLIITDINMPDIN 60
Query: 84 GFKLLEHVGLEMD---LPVIMLSAYGDTKLVMKGITHGACDYLLKP---VRIEEL 132
G +L+ V + +P+ ++S G + KG++ GA +YL+KP R+++L
Sbjct: 61 GLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVKPFDPARLQDL 115
>TIGR_CMR|GSU_2223 [details] [associations]
symbol:GSU_2223 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6
GeneID:2685646 KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV
ProtClustDB:CLSK828765 BioCyc:GSUL243231:GH27-2170-MONOMER
Uniprot:Q74AX6
Length = 121
Score = 134 (52.2 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 34/115 (29%), Positives = 65/115 (56%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQ-YEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
R+L +D T +L +++ +EV + AL++L R DL+I+D++MPD++
Sbjct: 3 RILIAEDSATMRSMLVATIQSLDGFEVVEASSGFEALRLLPRER--LDLIITDINMPDIN 60
Query: 84 GFKLLEHVGLEMD---LPVIMLSAYGDTKLVMKGITHGACDYLLKP---VRIEEL 132
G +L+ V + +P+ ++S G + KG++ GA +YL+KP R+++L
Sbjct: 61 GLELVSFVRTSDNYRHIPLFIISTEGSERDREKGLSLGANEYLVKPFDPARLQDL 115
>TIGR_CMR|DET_0177 [details] [associations]
symbol:DET_0177 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815
RefSeq:YP_180925.1 ProteinModelPortal:Q3ZA24 STRING:Q3ZA24
GeneID:3230544 KEGG:det:DET0177 PATRIC:21607433 OMA:CIIKNEA
ProtClustDB:CLSK837633 BioCyc:DETH243164:GJNF-177-MONOMER
Uniprot:Q3ZA24
Length = 226
Score = 147 (56.8 bits), Expect = 6.7e-08, P = 6.7e-08
Identities = 34/115 (29%), Positives = 64/115 (55%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE--VTVTNQAVTALKMLRENRNNFDLVISDVHMPD 81
M +L V+D+ + + LR ++ +TV A++ + N + DLV+ D+ +PD
Sbjct: 1 MNILIVEDNDAAASTISSILRLSYHDAKITVCRTGYEAVESV--NSDKADLVLLDLGLPD 58
Query: 82 MDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVR-IEELKNI 135
M+G K+L+ + P+I+++A D + V+K + GA +Y+ KP R +E L +
Sbjct: 59 MNGLKVLDEIHPITGAPIIVVTACEDEENVLKALEQGADEYITKPFRHLEFLARV 113
>TAIR|locus:2139865 [details] [associations]
symbol:PHR1 "phosphate starvation response 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0016036 "cellular response to phosphate starvation"
evidence=IMP] [GO:0055063 "sulfate ion homeostasis" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=IEP] [GO:0071486 "cellular
response to high light intensity" evidence=IMP] InterPro:IPR001005
InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0016036 HSSP:O49397
InterPro:IPR025756 InterPro:IPR017930 InterPro:IPR006447
Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294 GO:GO:0071486
HOGENOM:HOG000064669 EMBL:AY081290 EMBL:BT002187 EMBL:AJ310799
IPI:IPI00520685 RefSeq:NP_194590.2 UniGene:At.4525
ProteinModelPortal:Q94CL7 SMR:Q94CL7 PaxDb:Q94CL7 PRIDE:Q94CL7
EnsemblPlants:AT4G28610.1 GeneID:828979 KEGG:ath:AT4G28610
TAIR:At4g28610 eggNOG:NOG275307 InParanoid:Q94CL7 OMA:EKQCKSG
PhylomeDB:Q94CL7 ProtClustDB:CLSN2915055 Genevestigator:Q94CL7
GO:GO:0055063 Uniprot:Q94CL7
Length = 409
Score = 155 (59.6 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 32/54 (59%), Positives = 39/54 (72%)
Query: 212 KPRVVWTPELHRKFVGAVNQLG-VDKAVPKKILDLMNVEGLTRENVASHLQKFR 264
K R+ WTPELH FV AVN LG ++A PK +L +M VEGLT +V SHLQK+R
Sbjct: 225 KARMRWTPELHEAFVEAVNSLGGSERATPKGVLKIMKVEGLTIYHVKSHLQKYR 278
>TAIR|locus:2063141 [details] [associations]
symbol:AT2G40260 "AT2G40260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AC007020
HOGENOM:HOG000090767 IPI:IPI00530168 PIR:C84827 RefSeq:NP_181555.1
UniGene:At.53083 ProteinModelPortal:Q9SIZ5 SMR:Q9SIZ5 PRIDE:Q9SIZ5
EnsemblPlants:AT2G40260.1 GeneID:818618 KEGG:ath:AT2G40260
TAIR:At2g40260 eggNOG:NOG267620 InParanoid:Q9SIZ5 OMA:FRINSHE
PhylomeDB:Q9SIZ5 ProtClustDB:CLSN2913060 ArrayExpress:Q9SIZ5
Genevestigator:Q9SIZ5 Uniprot:Q9SIZ5
Length = 410
Score = 155 (59.6 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 39/111 (35%), Positives = 54/111 (48%)
Query: 155 NQENSRVGAGEGGQGAMSTGNSDQNGKSNRKRKXXXXXXXXXXXXXXXXXXXSTTQKKPR 214
N+E+ E G+ + DQ+ SN + K PR
Sbjct: 25 NEEDKDEEDDEEGEEDEEERSGDQSPSSNSYEEESGSHHHDQNKKNGGSVRPYNRSKTPR 84
Query: 215 VVWTPELHRKFVGAVNQLG-VDKAVPKKILDLMNVEGLTRENVASHLQKFR 264
+ WTPELH F+ AV +LG D+A PK +L LMNV+GL+ +V SHLQ +R
Sbjct: 85 LRWTPELHICFLQAVERLGGPDRATPKLVLQLMNVKGLSIAHVKSHLQMYR 135
>UNIPROTKB|P14376 [details] [associations]
symbol:rcsC "RcsC sensory histidine kinase" species:83333
"Escherichia coli K-12" [GO:0018106 "peptidyl-histidine
phosphorylation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0023014 "signal transduction by phosphorylation"
evidence=IEA;IDA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0046777
"protein autophosphorylation" evidence=IMP] [GO:0044010
"single-species biofilm formation" evidence=IMP] [GO:0071470
"cellular response to osmotic stress" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA;RCA]
[GO:0016020 "membrane" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IDA] [GO:0000155 "phosphorelay sensor kinase activity"
evidence=IEA;IDA] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 InterPro:IPR019017 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 Pfam:PF09456 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50112 PROSITE:PS51426 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:U00096_GR GO:GO:0046777 GO:GO:0005622
GO:GO:0071470 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 eggNOG:COG0642
BRENDA:2.7.13.3 GO:GO:0018106 GO:GO:0044010 EMBL:M28242 EMBL:L11272
PIR:H64991 RefSeq:NP_416722.2 PDB:2AYX PDB:2AYY PDB:2AYZ
PDBsum:2AYX PDBsum:2AYY PDBsum:2AYZ ProteinModelPortal:P14376
SMR:P14376 DIP:DIP-10647N IntAct:P14376 MINT:MINT-1267658
PRIDE:P14376 EnsemblBacteria:EBESCT00000001645
EnsemblBacteria:EBESCT00000017555 GeneID:948993 KEGG:eco:b2218
PATRIC:32119795 EchoBASE:EB0815 EcoGene:EG10822
HOGENOM:HOG000122300 KO:K07677 OMA:HPINRSL ProtClustDB:PRK10841
BioCyc:EcoCyc:RCSC-MONOMER BioCyc:ECOL316407:JW5917-MONOMER
BioCyc:ECOL316407:JW5920-MONOMER EvolutionaryTrace:P14376
Genevestigator:P14376 Uniprot:P14376
Length = 949
Score = 160 (61.4 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 38/111 (34%), Positives = 65/111 (58%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
M +L VDD P ++L + L + Y+ N V AL +L ++N+ D+V+SDV+MP+MD
Sbjct: 825 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL--SKNHIDIVLSDVNMPNMD 882
Query: 84 GFKLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELK 133
G++L + + L + LPVI ++A + + + G L KPV ++ +K
Sbjct: 883 GYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIK 933
>TIGR_CMR|BA_5661 [details] [associations]
symbol:BA_5661 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000792 InterPro:IPR001789
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038
PROSITE:PS00622 PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421
SMART:SM00448 GO:GO:0035556 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0043565 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
HOGENOM:HOG000034813 HSSP:P10957 RefSeq:NP_847809.1
RefSeq:YP_022338.1 RefSeq:YP_031501.1 ProteinModelPortal:Q81JP1
DNASU:1085395 EnsemblBacteria:EBBACT00000009931
EnsemblBacteria:EBBACT00000017478 EnsemblBacteria:EBBACT00000024022
GeneID:1085395 GeneID:2816223 GeneID:2851759 KEGG:ban:BA_5661
KEGG:bar:GBAA_5661 KEGG:bat:BAS5263 OMA:CAHELVG
ProtClustDB:CLSK917695 BioCyc:BANT260799:GJAJ-5337-MONOMER
BioCyc:BANT261594:GJ7F-5516-MONOMER Uniprot:Q81JP1
Length = 215
Score = 145 (56.1 bits), Expect = 7.6e-08, P = 7.6e-08
Identities = 41/136 (30%), Positives = 72/136 (52%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKML-RENRNNFDLVISDVHMPDM 82
++VL VDD LK L FL + Q ++ + +A + L + N D+V+ D++MP+M
Sbjct: 3 IKVLLVDDHTVVLKGLAFFL-STQEDIELVGEASNGKEALVKVGETNPDVVLMDLYMPEM 61
Query: 83 DGFKLLEHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141
DG + + E D+ VI+L+++ D V+ + GA Y+LK V ++L + +
Sbjct: 62 DGVEATACIKKEYPDVKVIVLTSFSDQAHVLPALRAGASGYILKDVEPDQLVEAIRSAYK 121
Query: 142 RK-KVGPKDQNKLLNQ 156
++ P N LL+Q
Sbjct: 122 GNIQLHPDIANALLSQ 137
>UNIPROTKB|P0AFU4 [details] [associations]
symbol:glrR "GlrR DNA-binding transcriptional activator"
species:83333 "Escherichia coli K-12" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA;IMP] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IEP] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IMP] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=ISS;IDA] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0005737
GO:GO:0006355 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:U36841 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
EMBL:M16778 EMBL:S67014 EMBL:Z21843 PIR:A65033 RefSeq:NP_417049.1
RefSeq:YP_490782.1 ProteinModelPortal:P0AFU4 SMR:P0AFU4
IntAct:P0AFU4 MINT:MINT-1317436 PRIDE:P0AFU4
EnsemblBacteria:EBESCT00000000551 EnsemblBacteria:EBESCT00000014286
GeneID:12930208 GeneID:947042 KEGG:ecj:Y75_p2507 KEGG:eco:b2554
PATRIC:32120507 EchoBASE:EB1262 EcoGene:EG11285 KO:K07715
OMA:FAEIQKH ProtClustDB:PRK15115 BioCyc:EcoCyc:EG11285-MONOMER
BioCyc:ECOL316407:JW2538-MONOMER Genevestigator:P0AFU4
Uniprot:P0AFU4
Length = 444
Score = 155 (59.6 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 38/103 (36%), Positives = 55/103 (53%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L VDDDP LK+L L + Y V L++L NR DLVISD+ M +MDG
Sbjct: 8 LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVL--NREKVDLVISDLRMDEMDGM 65
Query: 86 KLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPV 127
+L + ++ +PVI+L+A+G + G +L KPV
Sbjct: 66 QLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPV 108
>TIGR_CMR|CPS_2786 [details] [associations]
symbol:CPS_2786 "response regulator" species:167879
"Colwellia psychrerythraea 34H" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
SUPFAM:SSF46894 HOGENOM:HOG000034815 KO:K02483 RefSeq:YP_269498.1
ProteinModelPortal:Q480M1 STRING:Q480M1 GeneID:3518447
KEGG:cps:CPS_2786 PATRIC:21468611 ProtClustDB:CLSK757256
BioCyc:CPSY167879:GI48-2847-MONOMER Uniprot:Q480M1
Length = 243
Score = 148 (57.2 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 39/110 (35%), Positives = 62/110 (56%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
MR+L V+DD + L+ L + V ++ AL L + D+VI D+ +PD+D
Sbjct: 1 MRILLVEDDQGLAEALQQSLVREGFVVDHLSRGKLALTALAVPSH--DMVILDLGLPDID 58
Query: 84 GFKLLEHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
G +L+ + + DLPVI+L+A +KG+ +GA DYL KP ++EL
Sbjct: 59 GLLVLKEIRAKKNDLPVIILTARDSIDSKVKGLDYGADDYLAKPFDMQEL 108
>TIGR_CMR|APH_1099 [details] [associations]
symbol:APH_1099 "DNA-binding response regulator"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 ProtClustDB:CLSK749538 RefSeq:YP_505647.1
ProteinModelPortal:Q2GJ04 STRING:Q2GJ04 GeneID:3930636
KEGG:aph:APH_1099 PATRIC:20950956 OMA:ETMASAQ
BioCyc:APHA212042:GHPM-1105-MONOMER Uniprot:Q2GJ04
Length = 276
Score = 150 (57.9 bits), Expect = 8.8e-08, P = 8.8e-08
Identities = 38/127 (29%), Positives = 65/127 (51%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPD-M 82
MR+L ++DD C K +E L A + A + +++D+VI D+H P +
Sbjct: 1 MRILLIEDDVACAKAVEASLSAEGHFCETMASAQDCYGSIIPKNDDYDVVILDIHFPGKI 60
Query: 83 DGFKLLEHVGLE-MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141
DG+ +L + + +PV++LS +KG+ +GA DY+ KP EL + V+R
Sbjct: 61 DGYDILVKLRESGIRVPVLILSCISSVAHKVKGLYYGADDYITKPFHKSELLARIKAVVR 120
Query: 142 RKKVGPK 148
R + P+
Sbjct: 121 RTRGHPE 127
>TIGR_CMR|GSU_1285 [details] [associations]
symbol:GSU_1285 "sensory box sensor histidine
kinase/response regulator" species:243231 "Geobacter sulfurreducens
PCA" [GO:0000155 "phosphorelay sensor kinase activity"
evidence=ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR000014
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50112 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 InterPro:IPR001610
GO:GO:0005524 GO:GO:0016020 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0023014
SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
SUPFAM:SSF47226 InterPro:IPR013656 Pfam:PF08448 RefSeq:NP_952338.1
PDB:2R78 PDBsum:2R78 ProteinModelPortal:Q74DN1 SMR:Q74DN1
GeneID:2688111 KEGG:gsu:GSU1285 PATRIC:22025341
HOGENOM:HOG000144300 OMA:AHTNSER
BioCyc:GSUL243231:GH27-1253-MONOMER EvolutionaryTrace:Q74DN1
Uniprot:Q74DN1
Length = 772
Score = 158 (60.7 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 57/170 (33%), Positives = 79/170 (46%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
+ VL VDD KV+ L + + VT V AL + R FDLV+ DV MP MD
Sbjct: 546 LSVLLVDDSAVSRKVVSLLLESDGHRVTFAGDGVEALAAI--GREAFDLVLMDVQMPVMD 603
Query: 84 GFKLLEHV--GLEMD---LPVIMLSAY---GDTKLVMKGITHGACDYLLKPVRIEELKN- 134
GF+ + + G LP+I L+A GD +L ++ GA DYL KPV EL+
Sbjct: 604 GFEAMRAIRAGEAAGGARLPIIALTARALAGDRELCLEA---GADDYLAKPVNFSELRRV 660
Query: 135 IWQHVIRRKKVGPKDQNKLLNQENSRVGAGEGGQ-----GAMSTGNSDQN 179
I +H R K + + AG G+ GA S G+ D++
Sbjct: 661 ISRHCCRESKPSALSAENRPDAAGATPPAGTFGELMDELGA-SVGDRDED 709
>UNIPROTKB|P71403 [details] [associations]
symbol:cheY "Chemotaxis protein CheY homolog" species:85962
"Helicobacter pylori 26695" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0046872 GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AE000511
GenomeReviews:AE000511_GR GO:GO:0001539 KO:K03413 EMBL:X81897
EMBL:U97567 EMBL:AF021090 PIR:C64653 RefSeq:NP_207858.1
RefSeq:YP_006934983.1 PDB:3GWG PDB:3H1E PDB:3H1F PDB:3H1G
PDBsum:3GWG PDBsum:3H1E PDBsum:3H1F PDBsum:3H1G
ProteinModelPortal:P71403 DIP:DIP-3256N MINT:MINT-160671
GeneID:13870261 GeneID:899603 KEGG:heo:C694_05515 KEGG:hpy:HP1067
PATRIC:20593473 OMA:DVLITDW ProtClustDB:CLSK872349
EvolutionaryTrace:P71403 Uniprot:P71403
Length = 124
Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 34/114 (29%), Positives = 62/114 (54%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
M++L VDD T ++++N L YE V V A + L N + ++I+D +MP+M
Sbjct: 1 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADT-KVLITDWNMPEM 59
Query: 83 DGFKLLEHVGLEM---DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELK 133
+G L++ V + ++P+IM++ G V+ + G +Y++KP + LK
Sbjct: 60 NGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLK 113
>TIGR_CMR|CHY_1855 [details] [associations]
symbol:CHY_1855 "sigma-54 dependent transcriptional
regulator/response regulator" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00688 RefSeq:YP_360675.1
ProteinModelPortal:Q3AB09 STRING:Q3AB09 GeneID:3727631
KEGG:chy:CHY_1855 PATRIC:21276809 KO:K02481 OMA:NTRELFH
ProtClustDB:CLSK928866 BioCyc:CHYD246194:GJCN-1854-MONOMER
Uniprot:Q3AB09
Length = 443
Score = 154 (59.3 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 45/146 (30%), Positives = 75/146 (51%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
++VL VDD+ +L L YEV AL+ L+E F L I D+ MP +D
Sbjct: 5 IKVLVVDDEENFRDLLIQRLTRKGYEVKGAATGEEALQFLKEE--TFHLAIFDIKMPGID 62
Query: 84 GFKLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
G +LL+ L+ +L VI+L+ +G + + + GA DYL KP + EL+ Q +
Sbjct: 63 GIELLQRARQLDENLQVIILTGHGTIESAIGAMKLGAYDYLTKPCNLAELEITLQKAYEK 122
Query: 143 KKVGPKD---QNKLLNQENSRVGAGE 165
+++ ++ + LL +S+V G+
Sbjct: 123 RQLLEENLGMKEVLLRDRSSKVIVGK 148
>TAIR|locus:2148720 [details] [associations]
symbol:PHL1 "AT5G29000" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
HSSP:O49397 InterPro:IPR025756 InterPro:IPR017930
InterPro:IPR006447 Pfam:PF14379 TIGRFAMs:TIGR01557 PROSITE:PS51294
EMBL:AC018632 EMBL:BT002344 EMBL:AY085154 IPI:IPI00527102
IPI:IPI00527253 IPI:IPI00891441 RefSeq:NP_001078629.1
RefSeq:NP_001119299.1 RefSeq:NP_568512.3 RefSeq:NP_851090.1
UniGene:At.26183 ProteinModelPortal:Q8GUN5 SMR:Q8GUN5 PRIDE:Q8GUN5
EnsemblPlants:AT5G29000.2 GeneID:833026 KEGG:ath:AT5G29000
TAIR:At5g29000 eggNOG:NOG275266 InParanoid:Q8GUN5 OMA:DSSSHNP
PhylomeDB:Q8GUN5 ProtClustDB:CLSN2680328 Genevestigator:Q8GUN5
Uniprot:Q8GUN5
Length = 413
Score = 156 (60.0 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 33/59 (55%), Positives = 40/59 (67%)
Query: 207 STTQKKPRVVWTPELHRKFVGAVNQLG-VDKAVPKKILDLMNVEGLTRENVASHLQKFR 264
S K R+ WTPELH FV AVNQLG ++A PK +L L+N GLT +V SHLQK+R
Sbjct: 226 SVATSKQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYR 284
Score = 41 (19.5 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 384 SSELNQLPQSKSTTQIGDFNHINSPTT 410
+SE+ PQ K T I D ++ T+
Sbjct: 292 TSEVTGEPQEKKMTSIEDIKSLDMKTS 318
>UNIPROTKB|P0AEC5 [details] [associations]
symbol:barA species:83333 "Escherichia coli K-12"
[GO:0009927 "histidine phosphotransfer kinase activity"
evidence=IDA] [GO:0046777 "protein autophosphorylation"
evidence=IDA] [GO:0006468 "protein phosphorylation" evidence=IDA]
[GO:0042542 "response to hydrogen peroxide" evidence=IMP]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0023014 "signal transduction by phosphorylation"
evidence=IEA;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0071310 "cellular response to organic substance"
evidence=IEP] [GO:0016868 "intramolecular transferase activity,
phosphotransferases" evidence=ISS] [GO:0005887 "integral to plasma
membrane" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA;IDA]
[GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA;IDA]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR008207
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50885 PROSITE:PS50894 SMART:SM00073 SMART:SM00304
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
GO:GO:0016021 GO:GO:0005886 GO:GO:0005524 GO:GO:0006355
GO:GO:0035556 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046777 GO:GO:0006351 GO:GO:0005622
GO:GO:0042542 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 GO:GO:0009927 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 EMBL:D10888 EMBL:U29580
PIR:S20550 RefSeq:NP_417266.1 RefSeq:YP_490994.1
ProteinModelPortal:P0AEC5 SMR:P0AEC5 DIP:DIP-47932N IntAct:P0AEC5
MINT:MINT-1307958 EnsemblBacteria:EBESCT00000000619
EnsemblBacteria:EBESCT00000017432 GeneID:12933292 GeneID:947255
KEGG:ecj:Y75_p2723 KEGG:eco:b2786 PATRIC:32120988 EchoBASE:EB1341
EcoGene:EG11367 HOGENOM:HOG000272329 KO:K07678 OMA:ANQVISQ
ProtClustDB:PRK11107 BioCyc:EcoCyc:BARA-MONOMER
BioCyc:ECOL316407:JW2757-MONOMER Genevestigator:P0AEC5
GO:GO:0071310 InterPro:IPR019247 Pfam:PF09984 Uniprot:P0AEC5
Length = 918
Score = 158 (60.7 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 43/147 (29%), Positives = 74/147 (50%)
Query: 18 DKFPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDV 77
D+ + M V+AVDD+P LK++ L V + + A++ R + FDL++ D+
Sbjct: 662 DESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVE--RAKQMPFDLILMDI 719
Query: 78 HMPDMDGFK---LLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKN 134
MPDMDG + L+ + + PVI ++A+ K + G DYL KP+ E L N
Sbjct: 720 QMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHN 779
Query: 135 IWQHVIRRKKVGPKDQNKLLNQENSRV 161
+ + R K G ++++ E + +
Sbjct: 780 L----LLRYKPGSGISSRVVTPEVNEI 802
>UNIPROTKB|P96373 [details] [associations]
symbol:kdpE "Transcriptional regulatory protein KdpE"
species:1773 "Mycobacterium tuberculosis" [GO:0005515 "protein
binding" evidence=IPI] [GO:0040007 "growth" evidence=IMP]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0005737
GO:GO:0040007 GO:GO:0006355 EMBL:BX842575 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034815 KO:K07667 PIR:F70623 RefSeq:NP_215543.1
RefSeq:NP_335494.1 RefSeq:YP_006514389.1 HSSP:P08402
ProteinModelPortal:P96373 SMR:P96373
EnsemblBacteria:EBMYCT00000002976 EnsemblBacteria:EBMYCT00000071258
GeneID:13319591 GeneID:886046 GeneID:925129 KEGG:mtc:MT1056
KEGG:mtu:Rv1027c KEGG:mtv:RVBD_1027c PATRIC:18124070
TubercuList:Rv1027c OMA:RAMQINL ProtClustDB:CLSK790901
Uniprot:P96373
Length = 226
Score = 145 (56.1 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 41/141 (29%), Positives = 71/141 (50%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
VL +DD+P L+ L L Y+V + AL+ E+ D+VI D+ +PDM G
Sbjct: 4 VLVIDDEPQILRALRINLTVRGYQVITASTGAGALRAAAEHPP--DVVILDLGLPDMSGI 61
Query: 86 KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKV 145
+L + + PVI+LSA D+ ++ + GA DY+ KP ++E + +RR
Sbjct: 62 DVLGGLRGWLTAPVIVLSARTDSSDKVQALDAGADDYVTKPFGMDEFLARLRAAVRRNTA 121
Query: 146 GPKDQNKLLNQENSRVG-AGE 165
+ + ++ ++ V AG+
Sbjct: 122 AAELEQPVIETDSFTVDLAGK 142
>TIGR_CMR|CPS_3065 [details] [associations]
symbol:CPS_3065 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_269763.1 ProteinModelPortal:Q47ZK7 STRING:Q47ZK7
GeneID:3520016 KEGG:cps:CPS_3065 PATRIC:21469133
ProtClustDB:CLSK938167 BioCyc:CPSY167879:GI48-3114-MONOMER
Uniprot:Q47ZK7
Length = 237
Score = 146 (56.5 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 38/134 (28%), Positives = 72/134 (53%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
M +L ++DD ++ E +L++ YE T+ A+ M++ + + DL++ D+ +P +D
Sbjct: 13 MHILIIEDDKEIARLTEIYLQSTGYETTIIADGSLAIAMIK--KLSPDLILLDLMLPGVD 70
Query: 84 GFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143
GF+L + + P+I+L+A D + + GA DYL KP + + + ++RR
Sbjct: 71 GFELCKQAREFYNGPIIVLTAMEDDLSEVSLLKLGADDYLRKPAKPHIMSARIEALLRRA 130
Query: 144 KVGPKDQNKLLNQE 157
KV N+ + QE
Sbjct: 131 KVN----NEKVTQE 140
>TIGR_CMR|ECH_1012 [details] [associations]
symbol:ECH_1012 "DNA-binding response regulator"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 RefSeq:YP_507798.1 ProteinModelPortal:Q2GFI5
STRING:Q2GFI5 GeneID:3927952 KEGG:ech:ECH_1012 PATRIC:20577398
OMA:GISEMDS ProtClustDB:CLSK749538
BioCyc:ECHA205920:GJNR-1015-MONOMER Uniprot:Q2GFI5
Length = 265
Score = 148 (57.2 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 36/127 (28%), Positives = 65/127 (51%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPD-M 82
MR+L ++DD C K +E L + + A + +++D+VI D+H P +
Sbjct: 1 MRILLIEDDIACAKAVEASLSSEGHFCETMTSAQDCYGSIIPKNDDYDVVILDIHFPGKI 60
Query: 83 DGFKLLEHVGLE-MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141
DG+ +L + + +PV++LS +KG+ +GA DY+ KP EL + ++R
Sbjct: 61 DGYDILVKLRESGIKVPVLILSCISSVSHKVKGLYYGADDYVTKPFHKSELLARIKAIVR 120
Query: 142 RKKVGPK 148
R + P+
Sbjct: 121 RTRGHPE 127
>TAIR|locus:2042927 [details] [associations]
symbol:AT2G38300 "AT2G38300" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:BT004973
EMBL:AK117689 IPI:IPI00540370 RefSeq:NP_181364.2 UniGene:At.46670
ProteinModelPortal:Q8GYE4 SMR:Q8GYE4 IntAct:Q8GYE4 STRING:Q8GYE4
PRIDE:Q8GYE4 EnsemblPlants:AT2G38300.1 GeneID:818410
KEGG:ath:AT2G38300 TAIR:At2g38300 eggNOG:NOG310127
HOGENOM:HOG000090767 InParanoid:Q8GYE4 OMA:KDEEDRT PhylomeDB:Q8GYE4
ProtClustDB:CLSN2918908 Genevestigator:Q8GYE4 Uniprot:Q8GYE4
Length = 340
Score = 151 (58.2 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 57/186 (30%), Positives = 95/186 (51%)
Query: 211 KKPRVVWTPELHRKFVGAVNQLG-VDKAVPKKILDLMNVEGLTRENVASHLQKFRLYLKR 269
K PR+ WTP+LH +FV AV +LG ++A PK + +MN++GL+ +V SHLQ +R K+
Sbjct: 53 KVPRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYRS--KK 110
Query: 270 LSNETPQ-AGMVAALG-SKDSSYLRIGALDGF-GDLRSLNSPGRLSSSAISSSYVPGNMF 326
+ ++ AG S D + ++ L F G + +SP R S ++S
Sbjct: 111 IDDQGQAIAGHKHLFETSTDRNIYKLSQLPMFRGYNHNHDSPFRYGSKISNASL------ 164
Query: 327 GRFNSTSGLSMHGIASSGMIQPGHSQSFNTSFNTIGKIQQAMFPANRISNLFQGVRTSSE 386
+NS+S + + I+PG ++ + S N I+ + + N S FQ + +SS
Sbjct: 165 --WNSSSQGTERSLIDQ--IRPGLIRNASVSNN----IRGSDYWTNNKS--FQNIYSSSI 214
Query: 387 LNQLPQ 392
N P+
Sbjct: 215 SNHFPK 220
>TIGR_CMR|CHY_1413 [details] [associations]
symbol:CHY_1413 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_360245.1
ProteinModelPortal:Q3AC89 SMR:Q3AC89 STRING:Q3AC89 GeneID:3728069
KEGG:chy:CHY_1413 PATRIC:21275957 OMA:EHAWIAT
BioCyc:CHYD246194:GJCN-1412-MONOMER Uniprot:Q3AC89
Length = 228
Score = 145 (56.1 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 39/132 (29%), Positives = 70/132 (53%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L VDD+ +VL +L + V ALK E++ DL+I D+ +P++DG
Sbjct: 4 ILLVDDEEKIREVLRLYLEKEGFLVLEAQDGKEALKRFSEHK--IDLIILDLMLPEIDGM 61
Query: 86 KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKV 145
++ + + +P+IML+A G+ + G+ GA DY++KP E+ + V+RR
Sbjct: 62 EIAKEIRKTSLVPIIMLTARGEEIDKILGLEIGADDYVVKPFSPREVVARVKAVLRRSSG 121
Query: 146 GP-KDQNKLLNQ 156
P K+ + ++ Q
Sbjct: 122 IPEKEASSVIKQ 133
>TIGR_CMR|SPO_1892 [details] [associations]
symbol:SPO_1892 "C4-dicarboxylate transport
transcriptional regulatory protein DctD" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0015740 "C4-dicarboxylate transport"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000058489 InterPro:IPR025662
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00688
RefSeq:YP_167129.1 ProteinModelPortal:Q5LS76 DNASU:3193394
GeneID:3193394 KEGG:sil:SPO1892 PATRIC:23377117 OMA:IDNTMRR
ProtClustDB:CLSK933667 Uniprot:Q5LS76
Length = 444
Score = 160 (61.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 43/146 (29%), Positives = 76/146 (52%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
M++ VDD+ + + +L Y+ A ALK+L +VISD+ MP MD
Sbjct: 5 MKIAIVDDEQDMRQSISQWLALSGYDTETFASAEEALKVLGSEYPG--IVISDIKMPGMD 62
Query: 84 GFKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
G + L+ + G + LPVIM++ +GD + ++ + GA D+L KP + + ++ +
Sbjct: 63 GMQFLKKLMGADSSLPVIMITGHGDVPMAVEAMRVGAFDFLEKPFNPDRMSDLAKRASNA 122
Query: 143 KKVGPKDQNKLLNQENSRVGAGEGGQ 168
+++ D N+ L +E S +GGQ
Sbjct: 123 RRL-TLD-NRALRRELS-----DGGQ 141
Score = 37 (18.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 237 AVPKKILDLMNVEGLTREN--VA-SHLQK 262
A+ K+L +MN +G E VA S+LQ+
Sbjct: 248 ALQAKLLSVMNQQGTPAETRIVAISNLQE 276
Score = 37 (18.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 221 LHRKFVGAVNQLGVDKAVPKKILDLMNVE--GLTRENVASHLQKFRLYLKRLS 271
L K + +NQ G +I+ + N++ G T E+V +RL RL+
Sbjct: 249 LQAKLLSVMNQQGTPAET--RIVAISNLQEAGKTSEDVLRPDLFYRLAALRLT 299
>TIGR_CMR|GSU_0403 [details] [associations]
symbol:GSU_0403 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_951462.1 ProteinModelPortal:Q74G46 GeneID:2685717
KEGG:gsu:GSU0403 PATRIC:22023550 OMA:MEGKSID ProtClustDB:CLSK827806
BioCyc:GSUL243231:GH27-435-MONOMER Uniprot:Q74G46
Length = 120
Score = 131 (51.2 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 31/109 (28%), Positives = 57/109 (52%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRE-NRNNFDLVISDVHMPDMDG 84
VL VDD T K++ LR V +A ++ L + + DL++SD++MP+MDG
Sbjct: 4 VLIVDDSSTMRKIISRSLRQAGLPVDEIFEAGDGIEGLNVLSGKSVDLILSDINMPNMDG 63
Query: 85 FKLLEHVGLE-MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
+ ++ P++M++ G ++ + I+ GA D + KP ++L
Sbjct: 64 LEFIKQARANGHKAPIVMITTEGGEDILKEAISSGASDSIKKPFTPDQL 112
>TIGR_CMR|GSU_1891 [details] [associations]
symbol:GSU_1891 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 HSSP:P06143
RefSeq:NP_952940.1 ProteinModelPortal:Q74BY7 GeneID:2688472
KEGG:gsu:GSU1891 PATRIC:22026647 OMA:FATIRTH ProtClustDB:CLSK924546
BioCyc:GSUL243231:GH27-1919-MONOMER Uniprot:Q74BY7
Length = 379
Score = 148 (57.2 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 32/102 (31%), Positives = 58/102 (56%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
++ +DDDP L+ L L A Y V + A+ L + D+VI+D++MP+M G
Sbjct: 9 IVVIDDDPYVLESLSALLVAYGYIVHPFGRGADAVHRL--SCGGIDIVITDINMPEMTGI 66
Query: 86 KLLEHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
++L + D+PVI+++ Y + + ++ I GA D+++KP
Sbjct: 67 EVLRAIRKSNPDVPVILMTGYAELSVAVEAIKQGAFDFIIKP 108
Score = 47 (21.6 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 19/84 (22%), Positives = 36/84 (42%)
Query: 236 KAVPKKILDLMNVEGLTR-ENVASHLQKFRLYLKRLSNETPQAGMVAALGSKDSSYLRIG 294
K + K+++ + R E+ +H+ + LY ++ E + + S+ IG
Sbjct: 157 KNMSKEVVQRLTAAAELRDEDTGAHISRIGLYANHMARELAMSDEFIDTITLASAMHDIG 216
Query: 295 ALDGFGDLRSLNSPGRLSSSAISS 318
+ G D L PG LSS ++
Sbjct: 217 KI-GIPD-SILFKPGPLSSEEFAT 238
>TIGR_CMR|CPS_4272 [details] [associations]
symbol:CPS_4272 "sigma-54 dependent response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025944 PROSITE:PS00688 KO:K07715
RefSeq:YP_270922.1 ProteinModelPortal:Q47WA0 STRING:Q47WA0
GeneID:3519601 KEGG:cps:CPS_4272 PATRIC:21471409 OMA:DASVFIQ
BioCyc:CPSY167879:GI48-4282-MONOMER Uniprot:Q47WA0
Length = 457
Score = 153 (58.9 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 40/120 (33%), Positives = 64/120 (53%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNF--DLVISDVHMPDM 82
++L VDDDP+ L++L L A Y+V A AL L+ NF +VISD+ M M
Sbjct: 14 KILIVDDDPSLLRLLGIRLSAAGYDVESAANAKIALGRLQ----NFIPQVVISDLRMEGM 69
Query: 83 DGFKLLEHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141
DG L E + ++ ++PV++++A+G + G +L KP +EL + + IR
Sbjct: 70 DGMALFEQIRIQHPNIPVVIMTAHGTIPDAINATKQGVFSFLTKPFESQELLDTVEQAIR 129
>TIGR_CMR|GSU_2946 [details] [associations]
symbol:GSU_2946 "DNA-binding heavy metal response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR006291
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K07665 TIGRFAMs:TIGR01387
HSSP:Q9WYN0 RefSeq:NP_953988.1 ProteinModelPortal:Q748Q5
GeneID:2688389 KEGG:gsu:GSU2946 PATRIC:22028753 OMA:GYMLEIP
ProtClustDB:CLSK743174 BioCyc:GSUL243231:GH27-2897-MONOMER
Uniprot:Q748Q5
Length = 223
Score = 144 (55.7 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 41/136 (30%), Positives = 67/136 (49%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
MRVL ++D+ L+ + L + R N+DL+I D+ +P D
Sbjct: 1 MRVLIIEDEKKAAAYLQKGFAENGFTADTAASGDDGLHLARTE--NYDLIILDIMLPGRD 58
Query: 84 GFKLLEHVGLE-MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
G+++LE + E ++PVI LSA ++G+ GA DYL+KP EL + ++RR
Sbjct: 59 GWEVLEELRKEGSEVPVIYLSARDAVHDRVRGLELGADDYLVKPFAFSELLARARTILRR 118
Query: 143 KKVGPKDQNKLLNQEN 158
GP Q + L ++
Sbjct: 119 ---GPSRQPERLRADD 131
>TIGR_CMR|CHY_2567 [details] [associations]
symbol:CHY_2567 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 KO:K02483 RefSeq:YP_361360.1
ProteinModelPortal:Q3A924 SMR:Q3A924 STRING:Q3A924 GeneID:3728531
KEGG:chy:CHY_2567 PATRIC:21278183
BioCyc:CHYD246194:GJCN-2566-MONOMER Uniprot:Q3A924
Length = 236
Score = 145 (56.1 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 33/118 (27%), Positives = 63/118 (53%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L VDD+P + +++++L YEV AL + + DL++ D MP+M G
Sbjct: 4 KILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKP--DLIVLDWMMPEMSG 61
Query: 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
++L + + +P+IML+A + + G G DY++KP + EL + +++R
Sbjct: 62 IEVLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKR 119
>TIGR_CMR|SPO_2629 [details] [associations]
symbol:SPO_2629 "C4-dicarboxylate transport
transcriptional regulatory protein" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0015740 "C4-dicarboxylate
transport" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489 KO:K10126
RefSeq:YP_167839.1 ProteinModelPortal:Q5LQ67 DNASU:3194353
GeneID:3194353 KEGG:sil:SPO2629 PATRIC:23378667 OMA:TFYDKLA
ProtClustDB:CLSK751600 Uniprot:Q5LQ67
Length = 409
Score = 154 (59.3 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 40/113 (35%), Positives = 58/113 (51%)
Query: 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFD-LVISDVHMP 80
IG +VL VDDD + L L Y V V A + FD +++SD+ MP
Sbjct: 2 IG-KVLLVDDDAAVREALGQTLDLADYAVQTAGSFVAAKDHITAT---FDGVIVSDIRMP 57
Query: 81 DMDGFKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
DGF LL + ++ DLPVI+L+ GD + ++ + GA D+L KP +L
Sbjct: 58 GRDGFHLLSYAQDIDPDLPVILLTGEGDIPMAVRAMGDGAFDFLEKPCAAADL 110
Score = 41 (19.5 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 267 LKRLSNETPQAGM----VAALGSKDSSYLRIGALDGFGDLRSL 305
L RLS+ET Q + V+AL S+ + Y + ++ G R L
Sbjct: 209 LSRLSSETAQGSLFLDEVSAL-SQAAQYALLEEMEQAGGARLL 250
>UNIPROTKB|Q9KN24 [details] [associations]
symbol:VC_A0142 "C4-dicarboxylate transport transcriptional
regulatory protein" species:243277 "Vibrio cholerae O1 biovar El
Tor str. N16961" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0015740 "C4-dicarboxylate
transport" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0015740
HSSP:P13632 PIR:H82495 RefSeq:NP_232542.1 ProteinModelPortal:Q9KN24
DNASU:2612915 GeneID:2612915 KEGG:vch:VCA0142 PATRIC:20084859
OMA:FARKGRI ProtClustDB:CLSK869530 Uniprot:Q9KN24
Length = 450
Score = 152 (58.6 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 32/111 (28%), Positives = 61/111 (54%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
R+ ++DD + +L+ ++V + +AL + + +F V+SDV +PD DG
Sbjct: 5 RIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQ--SFAAVVSDVRLPDTDG 62
Query: 85 FKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKN 134
LL + ++ +PVI+++ +GD + +K + GA D++ KP + E L N
Sbjct: 63 LSLLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLAN 113
>TIGR_CMR|VC_A0142 [details] [associations]
symbol:VC_A0142 "C4-dicarboxylate transport
transcriptional regulatory protein" species:686 "Vibrio cholerae O1
biovar El Tor" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0015740 "C4-dicarboxylate
transport" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0015740
HSSP:P13632 PIR:H82495 RefSeq:NP_232542.1 ProteinModelPortal:Q9KN24
DNASU:2612915 GeneID:2612915 KEGG:vch:VCA0142 PATRIC:20084859
OMA:FARKGRI ProtClustDB:CLSK869530 Uniprot:Q9KN24
Length = 450
Score = 152 (58.6 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 32/111 (28%), Positives = 61/111 (54%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
R+ ++DD + +L+ ++V + +AL + + +F V+SDV +PD DG
Sbjct: 5 RIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQ--SFAAVVSDVRLPDTDG 62
Query: 85 FKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKN 134
LL + ++ +PVI+++ +GD + +K + GA D++ KP + E L N
Sbjct: 63 LSLLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLAN 113
>TIGR_CMR|GSU_0372 [details] [associations]
symbol:GSU_0372 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 PROSITE:PS00675
PROSITE:PS00676 HSSP:P10957 RefSeq:NP_951431.2 GeneID:2686674
KEGG:gsu:GSU0372 PATRIC:22023488 ProtClustDB:CLSK827784
BioCyc:GSUL243231:GH27-388-MONOMER Uniprot:Q74G75
Length = 455
Score = 152 (58.6 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 39/139 (28%), Positives = 72/139 (51%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L VDD+ ++L+ L +YE T AL +L E FD++++D+ M M G
Sbjct: 5 ILIVDDERGQREILQTILEGERYETTTAAGGQEALALLDERE--FDVILTDLKMQGMSGM 62
Query: 86 KLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144
+LLE + + +IM++A+G ++ + GA DYL KP+ + L + + R +
Sbjct: 63 ELLERLLAADPQQCIIMMTAHGTVDSAVEAMKKGAFDYLEKPLERDTLLLTLRRAVERVR 122
Query: 145 VGPKDQNKLLNQENSRVGA 163
+ +N+ L+++ GA
Sbjct: 123 L--LKENRALHKKLEETGA 139
>TIGR_CMR|SO_4633 [details] [associations]
symbol:SO_4633 "transcriptional regulatory protein OmpR"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 KO:K07659
ProtClustDB:PRK09468 OMA:AANSEQM RefSeq:NP_720149.1 HSSP:P03025
ProteinModelPortal:Q8E8N0 SMR:Q8E8N0 GeneID:1172214
KEGG:son:SO_4633 PATRIC:23528927 Uniprot:Q8E8N0
Length = 241
Score = 145 (56.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 39/120 (32%), Positives = 62/120 (51%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L VDDD +LE +L Y+V A ++L R NF L++ D+ +P DG
Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLE--RENFHLIVLDLMLPGEDG 64
Query: 85 FKLLEHVGLE-MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143
+ + + +P++ML+A GD + G+ GA DYL KP EL + V+RR+
Sbjct: 65 LSICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124
>UNIPROTKB|Q4GZK7 [details] [associations]
symbol:rr4 "Type A response regulator 4" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000126
EMBL:AJ938073 Uniprot:Q4GZK7
Length = 232
Score = 122 (48.0 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 26/80 (32%), Positives = 50/80 (62%)
Query: 71 DLVISDVHMPDMDGFKLLEHV-GLEM--DLPVIMLSAYGDTKLVMKGITHGACDYLLKPV 127
+L+I+D MP M G+ LL+ V G D+PV+++S+ + + + GA ++ LKPV
Sbjct: 75 NLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLEDGAEEFFLKPV 134
Query: 128 RIEELKNIWQHVIRRKKVGP 147
++ ++K + H+++RK+ P
Sbjct: 135 KLADMKKLKSHLLKRKQQLP 154
Score = 64 (27.6 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKML 63
VLAVDD K++E L+ Y+VT + AL++L
Sbjct: 12 VLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELL 49
>TIGR_CMR|GSU_1003 [details] [associations]
symbol:GSU_1003 "nitrogen regulation protein NR(I)"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006808 "regulation of nitrogen utilization" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K07712
HSSP:P06143 RefSeq:NP_952057.1 ProteinModelPortal:Q74EF9
GeneID:2687478 KEGG:gsu:GSU1003 PATRIC:22024778 OMA:NQVRAAD
ProtClustDB:CLSK828129 BioCyc:GSUL243231:GH27-989-MONOMER
Uniprot:Q74EF9
Length = 481
Score = 152 (58.6 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 38/134 (28%), Positives = 71/134 (52%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
R+L DD+ + VL LR + V + AL++++ N +DL I D+ MP G
Sbjct: 5 RILVADDEESMRWVLSKALRKKGFTVDLARDGEEALRLIQSNE--YDLAILDIKMPGFTG 62
Query: 85 FKLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143
+LL+ V L+ DL +++++A K ++ + GA DY+ KP ++ + I + V + +
Sbjct: 63 LELLDKVRELKHDLLMVIMTAEASMKNAVEAMKRGAYDYITKPFDLDVIDAIIEKVHKAR 122
Query: 144 KVGPKDQNKLLNQE 157
++ Q +L +E
Sbjct: 123 EI--TSQMTILREE 134
>TAIR|locus:2205339 [details] [associations]
symbol:HRS1 "HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY
ROOT SHORTENING 1" species:3702 "Arabidopsis thaliana" [GO:0005634
"nucleus" evidence=ISM] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0016036 "cellular response to
phosphate starvation" evidence=IMP] [GO:0080022 "primary root
development" evidence=IMP] [GO:0000041 "transition metal ion
transport" evidence=RCA] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC011810
GO:GO:0003677 GO:GO:0003700 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0080022 GO:GO:0016036 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 HOGENOM:HOG000237574 EMBL:AF367336 EMBL:AY124865
IPI:IPI00529437 PIR:F86267 RefSeq:NP_563926.1 UniGene:At.20366
ProteinModelPortal:Q9FX67 SMR:Q9FX67 STRING:Q9FX67
EnsemblPlants:AT1G13300.1 GeneID:837890 KEGG:ath:AT1G13300
TAIR:At1g13300 eggNOG:NOG274505 InParanoid:Q9FX67 OMA:TRDESMR
PhylomeDB:Q9FX67 ProtClustDB:CLSN2687791 Genevestigator:Q9FX67
Uniprot:Q9FX67
Length = 344
Score = 154 (59.3 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 39/110 (35%), Positives = 60/110 (54%)
Query: 211 KKPRVVWTPELHRKFVGAVNQLGVDK-AVPKKILDLMNVEGLTRENVASHLQKFRLYLKR 269
+K R W+ +LHR+F+ A+ LG A PK+I + M V+GLT + V SHLQK+RL+ +R
Sbjct: 180 RKQRRCWSSQLHRRFLNALQHLGGPHVATPKQIREFMKVDGLTNDEVKSHLQKYRLHTRR 239
Query: 270 LSNETPQAGMVAALGSKDSSYLRIGALDGFGDLRSLNSPGRLSSSAISSS 319
P G S+ ++ +G G +S S G+ + A +SS
Sbjct: 240 PRQTVPNNG-----NSQTQHFVVVG---GLWVPQSDYSTGKTTGGATTSS 281
Score = 37 (18.1 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 33 PTCLKVLENFLRACQYEV 50
P CL ++ + AC+ E+
Sbjct: 39 PLCLDLVTQAIEACKREL 56
>UNIPROTKB|P0AE67 [details] [associations]
symbol:cheY species:83333 "Escherichia coli K-12"
[GO:0006473 "protein acetylation" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0060286 "flagellar cell motility" evidence=TAS]
[GO:0006935 "chemotaxis" evidence=IEA;IMP;TAS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IMP] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IDA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0000287 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006935 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000160
PDB:1BDJ PDBsum:1BDJ HOGENOM:HOG000034820 GO:GO:0006473
GO:GO:0060286 PDB:1A0O PDB:1EAY PDB:1FFG PDB:1FFS PDB:1FFW PDB:2LP4
PDBsum:1A0O PDBsum:1EAY PDBsum:1FFG PDBsum:1FFS PDBsum:1FFW
PDBsum:2LP4 EMBL:M13463 EMBL:K02175 PIR:E25195 RefSeq:NP_416396.1
RefSeq:YP_490144.1 PDB:1AB5 PDB:1AB6 PDB:1C4W PDB:1CEY PDB:1CHN
PDB:1CYE PDB:1D4Z PDB:1DJM PDB:1E6K PDB:1E6L PDB:1E6M PDB:1EHC
PDB:1F4V PDB:1FQW PDB:1HEY PDB:1JBE PDB:1KMI PDB:1MIH PDB:1U8T
PDB:1UDR PDB:1VLZ PDB:1YMU PDB:1YMV PDB:1ZDM PDB:2B1J PDB:2ID7
PDB:2ID9 PDB:2IDM PDB:3CHY PDB:3F7N PDB:3FFT PDB:3FFW PDB:3FFX
PDB:3FGZ PDB:3MYY PDB:3OLV PDB:3OLW PDB:3OLX PDB:3OLY PDB:3OO0
PDB:3OO1 PDB:3RVJ PDB:3RVK PDB:3RVL PDB:3RVM PDB:3RVN PDB:3RVO
PDB:3RVP PDB:3RVQ PDB:3RVR PDB:3RVS PDB:5CHY PDB:6CHY PDBsum:1AB5
PDBsum:1AB6 PDBsum:1C4W PDBsum:1CEY PDBsum:1CHN PDBsum:1CYE
PDBsum:1D4Z PDBsum:1DJM PDBsum:1E6K PDBsum:1E6L PDBsum:1E6M
PDBsum:1EHC PDBsum:1F4V PDBsum:1FQW PDBsum:1HEY PDBsum:1JBE
PDBsum:1KMI PDBsum:1MIH PDBsum:1U8T PDBsum:1UDR PDBsum:1VLZ
PDBsum:1YMU PDBsum:1YMV PDBsum:1ZDM PDBsum:2B1J PDBsum:2ID7
PDBsum:2ID9 PDBsum:2IDM PDBsum:3CHY PDBsum:3F7N PDBsum:3FFT
PDBsum:3FFW PDBsum:3FFX PDBsum:3FGZ PDBsum:3MYY PDBsum:3OLV
PDBsum:3OLW PDBsum:3OLX PDBsum:3OLY PDBsum:3OO0 PDBsum:3OO1
PDBsum:3RVJ PDBsum:3RVK PDBsum:3RVL PDBsum:3RVM PDBsum:3RVN
PDBsum:3RVO PDBsum:3RVP PDBsum:3RVQ PDBsum:3RVR PDBsum:3RVS
PDBsum:5CHY PDBsum:6CHY ProteinModelPortal:P0AE67 SMR:P0AE67
DIP:DIP-48237N IntAct:P0AE67 SWISS-2DPAGE:P0AE67 PRIDE:P0AE67
EnsemblBacteria:EBESCT00000000750 EnsemblBacteria:EBESCT00000017790
GeneID:12930559 GeneID:946393 KEGG:ecj:Y75_p1858 KEGG:eco:b1882
PATRIC:32119091 EchoBASE:EB0148 EcoGene:EG10150 KO:K03413
OMA:FGFVISD ProtClustDB:PRK10610 BioCyc:EcoCyc:CHEY-MONOMER
BioCyc:ECOL316407:JW1871-MONOMER EvolutionaryTrace:P0AE67
Genevestigator:P0AE67 Uniprot:P0AE67
Length = 129
Score = 129 (50.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 35/107 (32%), Positives = 56/107 (52%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ F VISD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGF--VISDWNMPNM 63
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A + ++ GA Y++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>TIGR_CMR|GSU_0789 [details] [associations]
symbol:GSU_0789 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_951846.1 ProteinModelPortal:Q74F20 GeneID:2685295
KEGG:gsu:GSU0789 PATRIC:22024339 OMA:HAVAARN
BioCyc:GSUL243231:GH27-807-MONOMER Uniprot:Q74F20
Length = 125
Score = 129 (50.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 33/115 (28%), Positives = 55/115 (47%)
Query: 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRE-NRNNFDLVISDVHMPD 81
G VL DD+ L+ L+ + A V + L + + + L++ D+ +PD
Sbjct: 3 GGSVLICDDEEGMLRYLKKMIEAAGLRVETFGNGTSLLARIEGGDPGDASLLLQDMRLPD 62
Query: 82 MDGFKLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNI 135
DG ++L V L LPV+M++AY ++V GA D+L KP E + +
Sbjct: 63 ADGLEILHRVKELRPALPVVMMTAYACDEVVRAAFDGGASDFLPKPFTREAVLGV 117
>TIGR_CMR|SO_4477 [details] [associations]
symbol:SO_4477 "transcriptional regulatory protein CpxR"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 KO:K07662
HSSP:P08402 RefSeq:NP_719998.1 ProteinModelPortal:Q8E918
GeneID:1172072 KEGG:son:SO_4477 PATRIC:23528605 OMA:TTQEIHA
ProtClustDB:CLSK907666 Uniprot:Q8E918
Length = 228
Score = 143 (55.4 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 39/133 (29%), Positives = 69/133 (51%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
R+L +DDD ++L L +++T+ L++ ++DL++ DV +P ++G
Sbjct: 3 RILLIDDDLGLSELLGQLLELEGFKLTLAYDGKQGLELALAT--DYDLILLDVMLPKLNG 60
Query: 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144
F++L + PV+ML+A GD + G+ GA DYL KP EL + +IRR
Sbjct: 61 FEVLRALRQHKQTPVLMLTARGDEIDRVVGLEIGADDYLPKPFNDRELIARIRAIIRRSH 120
Query: 145 VGPKDQNKLLNQE 157
+ ++ + QE
Sbjct: 121 LTAQEIHATPAQE 133
>TIGR_CMR|GSU_0963 [details] [associations]
symbol:GSU_0963 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00688 HSSP:P06143 RefSeq:NP_952017.2 GeneID:2687572
KEGG:gsu:GSU0963 PATRIC:22024702 ProtClustDB:CLSK828118
BioCyc:GSUL243231:GH27-974-MONOMER Uniprot:Q74EJ9
Length = 464
Score = 151 (58.2 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 36/134 (26%), Positives = 75/134 (55%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
R++ +D++ +++E L Y V ++ A++ + ++DLV+SD+ MP MDG
Sbjct: 6 RIMLIDNEEGLCRMMEAVLADSGYAVKGYTRSFEAVEEFKAG--DWDLVVSDIKMPGMDG 63
Query: 85 FKLLEHVGLEMDL-PVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143
++L+ + + L PVIM++AY + ++ + GA D + KP EEL ++ ++
Sbjct: 64 LEVLQRIKAKDPLVPVIMITAYATVETSIQALRRGAYDMVTKPFEPEELLYRVKNALKHT 123
Query: 144 KVGPKDQNKLLNQE 157
++ ++N+ L +E
Sbjct: 124 QL--LEENRELREE 135
>UNIPROTKB|Q4KG71 [details] [associations]
symbol:fleR "Sigma-54 dependent DNA-binding response
regulator FleR" species:220664 "Pseudomonas protegens Pf-5"
[GO:0007155 "cell adhesion" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 GO:GO:0003677
GO:GO:0007155 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
GO:GO:0030092 KO:K10943 OMA:FQMIIDT ProtClustDB:CLSK866333
RefSeq:YP_258762.1 ProteinModelPortal:Q4KG71 STRING:Q4KG71
GeneID:3477220 KEGG:pfl:PFL_1636 PATRIC:19872501
BioCyc:PFLU220664:GIX8-1644-MONOMER Uniprot:Q4KG71
Length = 468
Score = 151 (58.2 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 39/127 (30%), Positives = 68/127 (53%)
Query: 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPD 81
+ ++VL V+DD + L + L ++ A AL+ + F LV+SDV+MP
Sbjct: 1 MAIKVLLVEDDRALREALADTLLLAGHDYKAVGSAEEALEAVAAEP--FSLVVSDVNMPG 58
Query: 82 MDGFKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKN-IWQHV 139
MDG +LL + + LPV++++A+G + ++ + GA DYL+KP L + + +H
Sbjct: 59 MDGHQLLGLLRARQPQLPVLLMTAHGAVERAVEAMRQGAADYLVKPFEPRALLDLVARHA 118
Query: 140 IRRKKVG 146
+ VG
Sbjct: 119 LGGLGVG 125
>TIGR_CMR|BA_0271 [details] [associations]
symbol:BA_0271 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_842823.1 RefSeq:YP_016879.1 RefSeq:YP_026540.1
ProteinModelPortal:Q81VD8 DNASU:1085970
EnsemblBacteria:EBBACT00000008300 EnsemblBacteria:EBBACT00000015450
EnsemblBacteria:EBBACT00000024239 GeneID:1085970 GeneID:2815661
GeneID:2850601 KEGG:ban:BA_0271 KEGG:bar:GBAA_0271 KEGG:bat:BAS0256
OMA:EAKEMPI ProtClustDB:CLSK915759
BioCyc:BANT260799:GJAJ-293-MONOMER
BioCyc:BANT261594:GJ7F-302-MONOMER Uniprot:Q81VD8
Length = 233
Score = 143 (55.4 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 40/129 (31%), Positives = 66/129 (51%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L VDD+ ++ +L+ Y+V L++L EN + LV+ D+ MP +DG
Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVH--LVVLDIMMPKVDGI 63
Query: 86 KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVR-IEELKNIWQHVIRRKK 144
+ + E ++P+IMLSA + G+T GA DY+ KP +E + I + R K
Sbjct: 64 HMCMKIREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123
Query: 145 V-GPKDQNK 152
+ G QN+
Sbjct: 124 MNGFAIQNE 132
>TAIR|locus:2170199 [details] [associations]
symbol:AT5G06800 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR025756
InterPro:IPR017930 InterPro:IPR006447 Pfam:PF14379
TIGRFAMs:TIGR01557 PROSITE:PS51294 EMBL:AK226644 IPI:IPI00528070
RefSeq:NP_196298.2 UniGene:At.50439 ProteinModelPortal:Q0WVU3
SMR:Q0WVU3 PRIDE:Q0WVU3 EnsemblPlants:AT5G06800.1 GeneID:830570
KEGG:ath:AT5G06800 TAIR:At5g06800 eggNOG:NOG298644
HOGENOM:HOG000241107 InParanoid:Q0WVU3 OMA:MDNINFE
ProtClustDB:CLSN2918619 Genevestigator:Q0WVU3 Uniprot:Q0WVU3
Length = 375
Score = 149 (57.5 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 31/55 (56%), Positives = 39/55 (70%)
Query: 212 KPRVVWTPELHRKFVGAVNQLG-VDKAVPKKILDLMNVEGLTRENVASHLQKFRL 265
K R+ WT +LH KFV VN+LG DKA PK IL M+ +GLT +V SHLQK+R+
Sbjct: 192 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKRMDSDGLTIFHVKSHLQKYRI 246
>UNIPROTKB|Q3ADB1 [details] [associations]
symbol:cheY1 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 RefSeq:YP_359873.1 ProteinModelPortal:Q3ADB1
STRING:Q3ADB1 GeneID:3728270 KEGG:chy:CHY_1026 PATRIC:21275187
OMA:GATAWIT BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 128 (50.1 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 35/120 (29%), Positives = 61/120 (50%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++LA+DD T L+ ++ L ++V + AL ML + FDL+I+D++MP+MDG
Sbjct: 3 KILALDDSATMLQSIKISLLRKGHQVATFTKGSEALDML--GKEKFDLIITDLNMPEMDG 60
Query: 85 FKLLEHVGLEMDL---PVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141
++ V + PVI+L+ + GA ++ KP E+L + + V R
Sbjct: 61 ITFIQKVRALSNYKFTPVIVLTTESQAAKKEQARRAGATAWITKPFTPEQLLGVVEKVAR 120
>TIGR_CMR|BA_1660 [details] [associations]
symbol:BA_1660 "chemotaxis response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
OMA:PFQAPKV RefSeq:NP_844107.1 RefSeq:YP_018295.1
RefSeq:YP_027808.1 HSSP:Q56312 ProteinModelPortal:Q81SI8 SMR:Q81SI8
DNASU:1083740 EnsemblBacteria:EBBACT00000009828
EnsemblBacteria:EBBACT00000015597 EnsemblBacteria:EBBACT00000020958
GeneID:1083740 GeneID:2817294 GeneID:2851539 KEGG:ban:BA_1660
KEGG:bar:GBAA_1660 KEGG:bat:BAS1541 ProtClustDB:CLSK916318
BioCyc:BANT260799:GJAJ-1613-MONOMER
BioCyc:BANT261594:GJ7F-1681-MONOMER Uniprot:Q81SI8
Length = 122
Score = 128 (50.1 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 32/111 (28%), Positives = 62/111 (55%)
Query: 25 RVLAVDDDPTCLKVLENFLRA-CQYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++L VDD +++N L++ ++EV V A++ +E + D+V D+ MP+M
Sbjct: 4 KILVVDDAMFMRTMIKNLLKSNSEFEVIGEAENGVEAIQKYKELQP--DIVTLDITMPEM 61
Query: 83 DGFKLL-EHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
DG + L E + ++ V++ SA G +V+ I GA D+++KP + + +
Sbjct: 62 DGLEALKEIIKIDASAKVVICSAMGQQGMVLDAIKGGAKDFIVKPFQADRV 112
>TIGR_CMR|CHY_1026 [details] [associations]
symbol:CHY_1026 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 RefSeq:YP_359873.1
ProteinModelPortal:Q3ADB1 STRING:Q3ADB1 GeneID:3728270
KEGG:chy:CHY_1026 PATRIC:21275187 OMA:GATAWIT
BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 128 (50.1 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 35/120 (29%), Positives = 61/120 (50%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++LA+DD T L+ ++ L ++V + AL ML + FDL+I+D++MP+MDG
Sbjct: 3 KILALDDSATMLQSIKISLLRKGHQVATFTKGSEALDML--GKEKFDLIITDLNMPEMDG 60
Query: 85 FKLLEHVGLEMDL---PVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141
++ V + PVI+L+ + GA ++ KP E+L + + V R
Sbjct: 61 ITFIQKVRALSNYKFTPVIVLTTESQAAKKEQARRAGATAWITKPFTPEQLLGVVEKVAR 120
>TIGR_CMR|GSU_2219 [details] [associations]
symbol:GSU_2219 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P08402
RefSeq:NP_953268.1 ProteinModelPortal:Q74AY0 GeneID:2685652
KEGG:gsu:GSU2219 PATRIC:22027293 OMA:VMLTAKK ProtClustDB:CLSK828762
BioCyc:GSUL243231:GH27-2166-MONOMER Uniprot:Q74AY0
Length = 123
Score = 128 (50.1 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 37/120 (30%), Positives = 64/120 (53%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQ-YEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
R+L V+D+ + LK LE+ L + + Y V +AL + DL+I D+ +P MD
Sbjct: 5 RILIVEDEESLLK-LESILLSSRGYAVAGVTDGKSALDYIAATPP--DLIILDIMLPGMD 61
Query: 84 GFKLLEHVGLEMD---LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140
GF++ + + + +PV+ML+A T+ KG+ GA Y+ KP + + I Q ++
Sbjct: 62 GFEVCQMIKADPSTRHIPVVMLTAKKSTQDRDKGLEAGASAYVTKPFKSARIIEIIQGLL 121
>UNIPROTKB|Q8ECB3 [details] [associations]
symbol:flrC "Two component signal transduction system
controlling flagella biosynthesis Sigma54-dependent response
regulator FlrC" species:211586 "Shewanella oneidensis MR-1"
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0030092 "regulation of flagellum assembly" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0019861 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092
KO:K10943 ProtClustDB:CLSK874687 HSSP:P41789 RefSeq:NP_718785.1
ProteinModelPortal:Q8ECB3 GeneID:1170922 KEGG:son:SO_3230
PATRIC:23526142 OMA:NWPNLPV Uniprot:Q8ECB3
Length = 446
Score = 150 (57.9 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 42/114 (36%), Positives = 63/114 (55%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYE-VTVTN--QAVTALKMLRENRNNFDLVISDVHMPD 81
++L V+DD + + L + L QY+ + V + +A+ ALK ++ FDLVISDV MP
Sbjct: 5 KLLLVEDDASLREALLDTLMLAQYDCIDVASGEEAILALK-----QHQFDLVISDVQMPG 59
Query: 82 MDGFKLLEHVGLEMD-LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKN 134
+ G LL ++ LPV++++AY + I GA DYL KP E L N
Sbjct: 60 IGGLGLLNYLQQHHPKLPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAPEVLLN 113
>TIGR_CMR|SO_3230 [details] [associations]
symbol:SO_3230 "flagellar regulatory protein C"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0019861 GO:GO:0035556 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00676
PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092 KO:K10943
ProtClustDB:CLSK874687 HSSP:P41789 RefSeq:NP_718785.1
ProteinModelPortal:Q8ECB3 GeneID:1170922 KEGG:son:SO_3230
PATRIC:23526142 OMA:NWPNLPV Uniprot:Q8ECB3
Length = 446
Score = 150 (57.9 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 42/114 (36%), Positives = 63/114 (55%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYE-VTVTN--QAVTALKMLRENRNNFDLVISDVHMPD 81
++L V+DD + + L + L QY+ + V + +A+ ALK ++ FDLVISDV MP
Sbjct: 5 KLLLVEDDASLREALLDTLMLAQYDCIDVASGEEAILALK-----QHQFDLVISDVQMPG 59
Query: 82 MDGFKLLEHVGLEMD-LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKN 134
+ G LL ++ LPV++++AY + I GA DYL KP E L N
Sbjct: 60 IGGLGLLNYLQQHHPKLPVLLMTAYATIGSAVSAIKLGAVDYLAKPFAPEVLLN 113
>TIGR_CMR|SO_3594 [details] [associations]
symbol:SO_3594 "transcriptional regulatory protein RstA,
putative" species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
KO:K02483 RefSeq:NP_719137.1 ProteinModelPortal:Q8EBD1
GeneID:1171260 KEGG:son:SO_3594 PATRIC:23526884 OMA:QYLLNID
ProtClustDB:CLSK907248 Uniprot:Q8EBD1
Length = 237
Score = 143 (55.4 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 37/130 (28%), Positives = 70/130 (53%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
RVL V+DD ++ ++L++ V V + T L L + D+++ D+ +P +DG
Sbjct: 9 RVLLVEDDVRLANLIVDYLKSHGMHVEVERRGDTVLTRLINYKP--DIILLDIMLPGIDG 66
Query: 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144
L E + P++++SA G ++ +KG+ GA DY++KPV L +++RR+
Sbjct: 67 LSLCEKLPDYFAGPILLMSALGSSEDQIKGLELGADDYVVKPVDPALLVARINNLLRRQN 126
Query: 145 VGPKDQNKLL 154
P+ ++ L
Sbjct: 127 QPPQAESHCL 136
>TIGR_CMR|CPS_2013 [details] [associations]
symbol:CPS_2013 "C4-dicarboxylate transport
transcriptional regulatory protein" species:167879 "Colwellia
psychrerythraea 34H" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0015740 "C4-dicarboxylate transport"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
RefSeq:YP_268743.1 ProteinModelPortal:Q483M3 STRING:Q483M3
GeneID:3520238 KEGG:cps:CPS_2013 PATRIC:21467153 KO:K10126
OMA:RKHGLNF ProtClustDB:CLSK907021
BioCyc:CPSY167879:GI48-2083-MONOMER Uniprot:Q483M3
Length = 453
Score = 150 (57.9 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 36/133 (27%), Positives = 70/133 (52%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
V +DD+ +E +EV +QA L L + +VISD++MP MDG
Sbjct: 9 VFVIDDEEHIRSAIEQTFELRNFEVQTFSQAHQLLNQLSDTWPG--VVISDINMPKMDGH 66
Query: 86 KLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144
+L+ V ++ +L I+L+ +GD + +K + +GA D++ KP ++L + + + ++
Sbjct: 67 QLMAEVKNIDSELSTILLTGFGDISMAVKAMRNGAYDFIEKPFNNDDLVDTVKRALDKRS 126
Query: 145 VGPKDQNKLLNQE 157
+ +N+ L +E
Sbjct: 127 LVL--ENRQLKKE 137
>TIGR_CMR|BA_0994 [details] [associations]
symbol:BA_0994 "response regulator" species:198094
"Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR001932 Pfam:PF00072 Pfam:PF07228 PROSITE:PS50110
SMART:SM00331 SMART:SM00448 GO:GO:0003824 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0008152 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF81606 HSSP:Q9A5I4
OMA:ERKWGDL RefSeq:NP_843495.1 RefSeq:YP_017622.1
RefSeq:YP_027204.1 ProteinModelPortal:Q81U90 DNASU:1088940
EnsemblBacteria:EBBACT00000010036 EnsemblBacteria:EBBACT00000013718
EnsemblBacteria:EBBACT00000020226 GeneID:1088940 GeneID:2814732
GeneID:2850195 KEGG:ban:BA_0994 KEGG:bar:GBAA_0994 KEGG:bat:BAS0930
HOGENOM:HOG000084736 ProtClustDB:CLSK916048
BioCyc:BANT260799:GJAJ-1008-MONOMER
BioCyc:BANT261594:GJ7F-1053-MONOMER Uniprot:Q81U90
Length = 380
Score = 145 (56.1 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 39/145 (26%), Positives = 77/145 (53%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVT-NQAVTALKMLR----ENRNN-FDLVISDV 77
M +L VDD+P + V++ L+ Y+ V+ N A + + +R+N DL++ D+
Sbjct: 1 MSILIVDDNPVNIFVIKKILKQAGYQDLVSLNSAQELFEYIHFGKDSSRHNEIDLILLDI 60
Query: 78 HMPDMDGFKLLEHVGLE---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPV-RIEELK 133
MP++DG ++ + E D+P+I ++A D + + + GA DY+ KP+ ++E L
Sbjct: 61 MMPEIDGLEVCRRLQKEEKFKDIPIIFVTALEDANKLAEALDIGAMDYITKPINKVELLA 120
Query: 134 NIWQHVIRRKKVG-PKDQNKLLNQE 157
+ + + ++ K+Q + L E
Sbjct: 121 RMRVALCLKSELNWHKEQEENLRNE 145
Score = 47 (21.6 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 18/85 (21%), Positives = 39/85 (45%)
Query: 581 SNVNTLLSGNCTMGPFSQ-SMDQSNSPYI--AQLTGVEKAPLNTKLRSNDDFLLEQSKSH 637
+NV L G+C +G F + ++++ P+ AQ+ L +ND+F E+
Sbjct: 284 TNVVELNRGSCAVGFFDEIKVEKTVIPFEKNAQIVLFTDGVLEAI--ANDEFEAEEKLRT 341
Query: 638 DGFIQNNYDPMDDMMSGILKRDSNE 662
F + + +++ + G K + +
Sbjct: 342 --FTERKWGELEEEIEGFYKEEQKQ 364
>UNIPROTKB|Q8ECK1 [details] [associations]
symbol:dctD "C4-dicarboxylate-responsive two component
Sigma54-dependent signal transduction system response regulator
DctD" species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0015740 "C4-dicarboxylate transport" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0015740
KO:K10126 ProtClustDB:CLSK907021 RefSeq:NP_718697.1 HSSP:P13632
ProteinModelPortal:Q8ECK1 GeneID:1170827 KEGG:son:SO_3138
PATRIC:23525948 OMA:RMASARY Uniprot:Q8ECK1
Length = 459
Score = 150 (57.9 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 37/133 (27%), Positives = 69/133 (51%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
VL +DD+P VL + K+L +R+ +VISDV+MP +DG
Sbjct: 12 VLIIDDEPHIGTVLVQLFELEGIKAFAATDPKGIAKLL--DRDWAGVVISDVNMPQLDGI 69
Query: 86 KLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144
L++ + + DLPV++L+ +GD + + + GA D+L KP E + ++ + + ++
Sbjct: 70 SLMQQIREQDADLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEHMLDVVKRALDKRS 129
Query: 145 VGPKDQNKLLNQE 157
+ +N+ L +E
Sbjct: 130 LTL--ENRKLKKE 140
>TIGR_CMR|SO_3138 [details] [associations]
symbol:SO_3138 "C4-dicarboxylate transport transcriptional
regulatory protein" species:211586 "Shewanella oneidensis MR-1"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0015740 "C4-dicarboxylate transport"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0015740
KO:K10126 ProtClustDB:CLSK907021 RefSeq:NP_718697.1 HSSP:P13632
ProteinModelPortal:Q8ECK1 GeneID:1170827 KEGG:son:SO_3138
PATRIC:23525948 OMA:RMASARY Uniprot:Q8ECK1
Length = 459
Score = 150 (57.9 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 37/133 (27%), Positives = 69/133 (51%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
VL +DD+P VL + K+L +R+ +VISDV+MP +DG
Sbjct: 12 VLIIDDEPHIGTVLVQLFELEGIKAFAATDPKGIAKLL--DRDWAGVVISDVNMPQLDGI 69
Query: 86 KLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144
L++ + + DLPV++L+ +GD + + + GA D+L KP E + ++ + + ++
Sbjct: 70 SLMQQIREQDADLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEHMLDVVKRALDKRS 129
Query: 145 VGPKDQNKLLNQE 157
+ +N+ L +E
Sbjct: 130 LTL--ENRKLKKE 140
>TAIR|locus:2041145 [details] [associations]
symbol:AT2G02060 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 HOGENOM:HOG000239342 EMBL:BT008556 EMBL:BT008699
EMBL:AK229511 IPI:IPI00542007 RefSeq:NP_565281.2 UniGene:At.41520
ProteinModelPortal:Q7X887 SMR:Q7X887 EnsemblPlants:AT2G02060.1
GeneID:814737 KEGG:ath:AT2G02060 TAIR:At2g02060 eggNOG:NOG268656
InParanoid:Q7X887 OMA:WREQEHE ProtClustDB:CLSN2681500
Genevestigator:Q7X887 Uniprot:Q7X887
Length = 256
Score = 144 (55.7 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 34/78 (43%), Positives = 49/78 (62%)
Query: 213 PRVVWTPELHRKFVGAVNQLGVD-KAVPKKILDLMNVEGLTRENVASHLQKFRLYLKRLS 271
PR+ WTP+LHR FV AV LG +A PK +L +M+V+GLT +V SHLQ +R K L+
Sbjct: 30 PRLRWTPDLHRCFVHAVEILGGQHRATPKLVLKMMDVKGLTISHVKSHLQMYRGGSK-LT 88
Query: 272 NETPQAGMVAALGSKDSS 289
E P+ +++ + S
Sbjct: 89 LEKPEESSSSSIRRRQDS 106
>UNIPROTKB|Q48GE0 [details] [associations]
symbol:fleR "Sigma-54 dependent DNA-binding response
regulator FleR" species:264730 "Pseudomonas syringae pv.
phaseolicola 1448A" [GO:0007155 "cell adhesion" evidence=ISS]
[GO:0030092 "regulation of flagellum assembly" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0007155 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:CP000058
GenomeReviews:CP000058_GR eggNOG:COG2204 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0030092
KO:K10943 RefSeq:YP_275543.1 ProteinModelPortal:Q48GE0
STRING:Q48GE0 GeneID:3555577 KEGG:psp:PSPPH_3385 PATRIC:19976178
OMA:FQMIIDT ProtClustDB:CLSK866333 Uniprot:Q48GE0
Length = 471
Score = 150 (57.9 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 41/130 (31%), Positives = 64/130 (49%)
Query: 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPD 81
+ + VL V+DD + + L L Y A AL + F LVISDV+MP
Sbjct: 1 MSINVLLVEDDRSLREALGETLELAGYGYQAVGSAEEAL--VAAEAQPFSLVISDVNMPG 58
Query: 82 MDGFKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL-KNIWQHV 139
MDG +LL + LPV++++A+G + + GA DYL+KP + L + +H
Sbjct: 59 MDGHQLLSLLRSRHPQLPVLLMTAHGAVDRAVDAMRQGAADYLVKPFEPKALIALVARHA 118
Query: 140 IRRKKVGPKD 149
+ R + +D
Sbjct: 119 LGRLEPAERD 128
>UNIPROTKB|Q884Y0 [details] [associations]
symbol:fleR "Sigma-54 dependent transcriptional
regulator/response regulator FleR" species:223283 "Pseudomonas
syringae pv. tomato str. DC3000" [GO:0001539 "ciliary or flagellar
motility" evidence=ISS] [GO:0030092 "regulation of flagellum
assembly" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AE016853 GenomeReviews:AE016853_GR eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
GO:GO:0001539 GO:GO:0030092 KO:K10943 OMA:FQMIIDT
ProtClustDB:CLSK866333 RefSeq:NP_791779.1 HSSP:P41789
ProteinModelPortal:Q884Y0 GeneID:1183601 KEGG:pst:PSPTO_1956
PATRIC:19995186 BioCyc:PSYR223283:GJIX-1996-MONOMER Uniprot:Q884Y0
Length = 471
Score = 150 (57.9 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 42/130 (32%), Positives = 65/130 (50%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
+ VL V+DD + + L L Y A AL + F LVISDV+MP MD
Sbjct: 3 INVLLVEDDRSLREALGETLELAGYGYQAVGSAEEAL--VAAEAQPFSLVISDVNMPGMD 60
Query: 84 GFKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL-KNIWQHVIR 141
G +LL + LPV++++A+G + + GA DYL+KP + L + +H +
Sbjct: 61 GHQLLSLLRSRHPQLPVLLMTAHGAVDRAVDAMRQGAADYLVKPFEPKALIALVARHALG 120
Query: 142 RKKVGPKDQN 151
R +GP + +
Sbjct: 121 R--LGPAESD 128
>TIGR_CMR|SO_4647 [details] [associations]
symbol:SO_4647 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:P08402
KO:K07660 ProtClustDB:CLSK907750 RefSeq:NP_720163.1
ProteinModelPortal:Q8E8L6 GeneID:1172229 KEGG:son:SO_4647
PATRIC:23528955 OMA:FEYFMLH Uniprot:Q8E8L6
Length = 231
Score = 142 (55.0 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 45/155 (29%), Positives = 71/155 (45%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
MR+L V+DD L+ L Y + V + L E N+D I DV +P +D
Sbjct: 1 MRLLLVEDDVALQTNLKQHLLDAHYSIDVASDGEEGLFQAVEY--NYDAAIIDVGLPKLD 58
Query: 84 GFKLLEHVGL-EMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
G L+ + E P+++L+A + ++G+ GA DYL KP EEL + +IRR
Sbjct: 59 GISLIRRIRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRR 118
Query: 143 K--KVGPKDQNKLLNQENSRVGAGEGGQGAMSTGN 175
K P N + S + + G+ +G+
Sbjct: 119 SAGKASPIITNGPFSLNTSSLEVRKEGELVTLSGS 153
>UNIPROTKB|P0AE88 [details] [associations]
symbol:cpxR "CpxR transcriptional dual regulator"
species:83333 "Escherichia coli K-12" [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS;IDA] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0045892
GO:GO:0045893 GO:GO:0035556 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:L19201
eggNOG:COG0745 HOGENOM:HOG000034819 EMBL:M36795 EMBL:X13307
EMBL:L14579 PIR:C65197 RefSeq:NP_418348.1 RefSeq:YP_491538.1
ProteinModelPortal:P0AE88 SMR:P0AE88 DIP:DIP-47991N IntAct:P0AE88
MINT:MINT-1292432 PaxDb:P0AE88 EnsemblBacteria:EBESCT00000002313
EnsemblBacteria:EBESCT00000017066 GeneID:12933651 GeneID:948404
KEGG:ecj:Y75_p3274 KEGG:eco:b3912 PATRIC:32123337 EchoBASE:EB0019
EcoGene:EG10020 KO:K07662 OMA:YQTPVIM ProtClustDB:PRK10955
BioCyc:EcoCyc:CPXR-MONOMER BioCyc:ECOL316407:JW3883-MONOMER
Genevestigator:P0AE88 Uniprot:P0AE88
Length = 232
Score = 142 (55.0 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 41/127 (32%), Positives = 62/127 (48%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L VDDD +L+ L + V V + AL +L ++ DL++ DV MP +G
Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS---IDLLLLDVMMPKKNG 59
Query: 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144
L+ + PVIML+A G + G+ GA DYL KP EL + ++RR
Sbjct: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119
Query: 145 VGPKDQN 151
+ QN
Sbjct: 120 WSEQQQN 126
>UNIPROTKB|Q9KMT1 [details] [associations]
symbol:VCA0239 "Transcriptional regulator" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
GenomeReviews:AE003853_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HSSP:P08402 EMBL:AE004364 PIR:E82483
RefSeq:NP_232637.1 ProteinModelPortal:Q9KMT1 DNASU:2612437
GeneID:2612437 KEGG:vch:VCA0239 PATRIC:20085039
ProtClustDB:CLSK788728 Uniprot:Q9KMT1
Length = 224
Score = 141 (54.7 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 37/131 (28%), Positives = 68/131 (51%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
MR+L ++DD + +E L+A +++ L+ ++ + DL+I D +P +D
Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEP--DLLILDRMLPHVD 58
Query: 84 GFKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
G L + + + ++MLSA G+ + ++G+ GA DYL KP EEL + ++R
Sbjct: 59 GLTLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIE-ALQR 117
Query: 143 KKVGPKDQNKL 153
+ + NKL
Sbjct: 118 RNIQTHTSNKL 128
>TIGR_CMR|VC_A0239 [details] [associations]
symbol:VC_A0239 "transcriptional regulator" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GenomeReviews:AE003853_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402
EMBL:AE004364 PIR:E82483 RefSeq:NP_232637.1
ProteinModelPortal:Q9KMT1 DNASU:2612437 GeneID:2612437
KEGG:vch:VCA0239 PATRIC:20085039 ProtClustDB:CLSK788728
Uniprot:Q9KMT1
Length = 224
Score = 141 (54.7 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 37/131 (28%), Positives = 68/131 (51%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
MR+L ++DD + +E L+A +++ L+ ++ + DL+I D +P +D
Sbjct: 1 MRILLIEDDERIARFIERGLKAEGHQIHRLKDGQYGLETVKSSEP--DLLILDRMLPHVD 58
Query: 84 GFKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
G L + + + ++MLSA G+ + ++G+ GA DYL KP EEL + ++R
Sbjct: 59 GLTLCQQIRATGNQVLILMLSALGEVEERIQGLRTGADDYLAKPFHFEELLARIE-ALQR 117
Query: 143 KKVGPKDQNKL 153
+ + NKL
Sbjct: 118 RNIQTHTSNKL 128
>UNIPROTKB|Q9KLN9 [details] [associations]
symbol:VC_A0704 "Phosphoglycerate transport system
transcriptional regulatory protein PgtA" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR025944 PROSITE:PS00688 HSSP:P10958
PIR:E82426 RefSeq:NP_233091.1 ProteinModelPortal:Q9KLN9
DNASU:2612077 GeneID:2612077 KEGG:vch:VCA0704 PATRIC:20085954
KO:K08476 OMA:DIYMPAM ProtClustDB:CLSK869733 Uniprot:Q9KLN9
Length = 439
Score = 149 (57.5 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 39/147 (26%), Positives = 79/147 (53%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFD-LVISDVHMPDMDG 84
VL +DDD VL+++L + + + + +++ +V+ D++MP + G
Sbjct: 24 VLLIDDDQD---VLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHG 80
Query: 85 FKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKN-IWQHV-IR 141
+LL+ + ++ +PVI+++ +GD + ++ + GACD+L KP+ +L I QH+ +R
Sbjct: 81 MELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELR 140
Query: 142 RKKVGPKDQNKLLNQENSRVGAGEGGQ 168
R + +Q LL++ R G+ Q
Sbjct: 141 RSFI---EQKLLLSRSVKRELVGKSAQ 164
>TIGR_CMR|VC_A0704 [details] [associations]
symbol:VC_A0704 "phosphoglycerate transport system
transcriptional regulatory protein PgtA" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00448 GO:GO:0005524 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:AE003853 GenomeReviews:AE003853_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR025944
PROSITE:PS00688 HSSP:P10958 PIR:E82426 RefSeq:NP_233091.1
ProteinModelPortal:Q9KLN9 DNASU:2612077 GeneID:2612077
KEGG:vch:VCA0704 PATRIC:20085954 KO:K08476 OMA:DIYMPAM
ProtClustDB:CLSK869733 Uniprot:Q9KLN9
Length = 439
Score = 149 (57.5 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 39/147 (26%), Positives = 79/147 (53%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFD-LVISDVHMPDMDG 84
VL +DDD VL+++L + + + + +++ +V+ D++MP + G
Sbjct: 24 VLLIDDDQD---VLDSYLHLMSIAGLTAKAVIDPTQAMSHIQPDWNGVVLLDMYMPQLHG 80
Query: 85 FKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKN-IWQHV-IR 141
+LL+ + ++ +PVI+++ +GD + ++ + GACD+L KP+ +L I QH+ +R
Sbjct: 81 MELLKQIKAVDDKIPVIVITGHGDIPMAVEAVKMGACDFLEKPINPPQLLTLIKQHLELR 140
Query: 142 RKKVGPKDQNKLLNQENSRVGAGEGGQ 168
R + +Q LL++ R G+ Q
Sbjct: 141 RSFI---EQKLLLSRSVKRELVGKSAQ 164
>TIGR_CMR|SPO_3037 [details] [associations]
symbol:SPO_3037 "DNA-binding response regulator, LysR
family" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 InterPro:IPR001789
Pfam:PF00072 Pfam:PF00126 PRINTS:PR00039 PROSITE:PS50110
PROSITE:PS50931 SMART:SM00448 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:YP_168241.1
ProteinModelPortal:Q5LP15 DNASU:3195987 GeneID:3195987
KEGG:sil:SPO3037 PATRIC:23379513 Uniprot:Q5LP15
Length = 269
Score = 144 (55.7 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 45/157 (28%), Positives = 74/157 (47%)
Query: 13 EDGDIDKFPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDL 72
+ GD ++ P +L VDD P + L L+ Y + AL L + DL
Sbjct: 105 QPGDDEELP---SLLVVDDTPQNIHHLHGLLKDA-YRIIPQTSGKGALSFL--SGELADL 158
Query: 73 VISDVHMPDMDGFKLLEHVGLEM---DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRI 129
++ D+ MPDMDG+++ + D+PVI L++ D KG+ GACD++ +P+
Sbjct: 159 ILLDIRMPDMDGYEVCRQIKSTASLADIPVIFLTSLDDPMDETKGLEMGACDFITRPIVP 218
Query: 130 EELK-NIWQHVIRRKKVGPKDQNKLLNQENSRVGAGE 165
L+ I H+ R+ + KLL + R+ E
Sbjct: 219 AILRARIRSHIELRQAQTALE--KLLARRADRLEKAE 253
>UNIPROTKB|P69228 [details] [associations]
symbol:baeR "BaeR-Phosphorylated DNA-binding
transcriptional activator" species:83333 "Escherichia coli K-12"
[GO:0005622 "intracellular" evidence=IEA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0035556
"intracellular signal transduction" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000160 "phosphorelay
signal transduction system" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;IEP;IDA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:2001023 "regulation of response to
drug" evidence=IMP] [GO:2000144 "positive regulation of
DNA-dependent transcription, initiation" evidence=IDA] [GO:0000986
"bacterial-type RNA polymerase core promoter proximal region
sequence-specific DNA binding" evidence=IDA] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0005737
GO:GO:0006355 GO:GO:0035556 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 EMBL:D14054 PIR:JX0283
RefSeq:NP_416583.1 RefSeq:YP_490321.1 ProteinModelPortal:P69228
SMR:P69228 IntAct:P69228 PRIDE:P69228
EnsemblBacteria:EBESCT00000000767 EnsemblBacteria:EBESCT00000014834
GeneID:12931433 GeneID:946605 KEGG:ecj:Y75_p2042 KEGG:eco:b2079
PATRIC:32119491 EchoBASE:EB1575 EcoGene:EG11618 KO:K07664
OMA:EADACRM ProtClustDB:PRK10710 BioCyc:EcoCyc:BAER-MONOMER
BioCyc:ECOL316407:JW2064-MONOMER Genevestigator:P69228
Uniprot:P69228
Length = 240
Score = 142 (55.0 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 35/120 (29%), Positives = 64/120 (53%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
R+L V+D+P ++L ++LRA Y T+ + L +R+ DL++ D+ +P DG
Sbjct: 12 RILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPP--DLILLDLMLPGTDG 69
Query: 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144
L + D+P++M++A + + G+ GA DY+ KP E+ + ++RR K
Sbjct: 70 LTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCK 129
>UNIPROTKB|Q50806 [details] [associations]
symbol:trcR "Response regulator homolog TrcR" species:1773
"Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0045892 GO:GO:0045893
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
EMBL:AL123456 EMBL:U88959 PIR:D70624 RefSeq:NP_215549.1
RefSeq:YP_006514396.1 SMR:Q50806 EnsemblBacteria:EBMYCT00000001946
GeneID:13319598 GeneID:887957 KEGG:mtu:Rv1033c KEGG:mtv:RVBD_1033c
PATRIC:18150824 TubercuList:Rv1033c KO:K07672 OMA:IAHNGRE
ProtClustDB:CLSK790905 Uniprot:Q50806
Length = 257
Score = 143 (55.4 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 40/127 (31%), Positives = 68/127 (53%)
Query: 18 DKFPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDV 77
D PI RVL VDD+P +++ L ++V V + A+ ++ D+++ D+
Sbjct: 28 DGSPI--RVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKF--DKVGPDVLVLDI 83
Query: 78 HMPDMDGFKLLEHVGLEMDL--PVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNI 135
+PD+DG ++L V E D+ P + L+A + G+T GA DY+ KP +EEL
Sbjct: 84 MLPDVDGLEILRRVR-ESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVAR 142
Query: 136 WQHVIRR 142
+ ++RR
Sbjct: 143 LRGLLRR 149
>TAIR|locus:2102509 [details] [associations]
symbol:RR17 "response regulator 17" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=TAS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005739 GO:GO:0005634
GO:GO:0009536 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K14492
EMBL:AF305722 EMBL:AL163972 IPI:IPI00540746 PIR:T49039
RefSeq:NP_567037.1 UniGene:At.5240 ProteinModelPortal:Q9FPR6
SMR:Q9FPR6 STRING:Q9FPR6 EnsemblPlants:AT3G56380.1 GeneID:824805
KEGG:ath:AT3G56380 GeneFarm:4130 TAIR:At3g56380 InParanoid:Q9FPR6
OMA:MEEELHV PhylomeDB:Q9FPR6 ProtClustDB:CLSN2917444
Genevestigator:Q9FPR6 GermOnline:AT3G56380 Uniprot:Q9FPR6
Length = 153
Score = 126 (49.4 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 40/146 (27%), Positives = 73/146 (50%)
Query: 11 GCEDGD---IDKFPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKML---- 63
GC G + + VLAVDD+ K++E L+ +VT + AL+ L
Sbjct: 4 GCGSGSDSCLSSMEEELHVLAVDDNLIDRKLVERILKISSCKVTTAENGLRALEYLGLGD 63
Query: 64 ---RENRNNF---DLVISDVHMPDMDGFKLLEHVGLEMDL---PVIMLSAYGDTKLVMKG 114
++ N +L+I+D MP M GF+LL+ V +L PV++LS+ + K
Sbjct: 64 PQQTDSLTNVMKVNLIITDYCMPGMTGFELLKKVKESSNLKEVPVVILSSENIPTRINKC 123
Query: 115 ITHGACDYLLKPVRIEELKNIWQHVI 140
+ GA ++ KP+++ +++ + H++
Sbjct: 124 LASGAQMFMQKPLKLSDVEKLKCHLL 149
>UNIPROTKB|Q9KRC3 [details] [associations]
symbol:VC_1719 "DNA-binding response regulator TorR"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K07772
ProtClustDB:PRK10766 PIR:G82164 RefSeq:NP_231355.1
ProteinModelPortal:Q9KRC3 SMR:Q9KRC3 DNASU:2613724 GeneID:2613724
KEGG:vch:VC1719 PATRIC:20082498 OMA:WRISAAR Uniprot:Q9KRC3
Length = 234
Score = 141 (54.7 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 38/136 (27%), Positives = 71/136 (52%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
VL V+DD L + + Y+VT + L N+ DLV+ D+++P DG
Sbjct: 5 VLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREALE--LNDIDLVLLDINLPGEDGL 62
Query: 86 KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL----KNI-WQ-HV 139
L + + ++ +I+++ D+ + G+ GA DY+ KPV + EL KN+ W+ +
Sbjct: 63 LLTRELRSQSEIGIILVTGRTDSIDKIVGLEMGADDYVTKPVDLRELQVRVKNLLWRISL 122
Query: 140 IRRKKVGPKDQNKLLN 155
+R+++ K +KL++
Sbjct: 123 AQRERITDKHDDKLVH 138
>TIGR_CMR|VC_1719 [details] [associations]
symbol:VC_1719 "DNA-binding response regulator TorR"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K07772
ProtClustDB:PRK10766 PIR:G82164 RefSeq:NP_231355.1
ProteinModelPortal:Q9KRC3 SMR:Q9KRC3 DNASU:2613724 GeneID:2613724
KEGG:vch:VC1719 PATRIC:20082498 OMA:WRISAAR Uniprot:Q9KRC3
Length = 234
Score = 141 (54.7 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 38/136 (27%), Positives = 71/136 (52%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
VL V+DD L + + Y+VT + L N+ DLV+ D+++P DG
Sbjct: 5 VLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREALE--LNDIDLVLLDINLPGEDGL 62
Query: 86 KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL----KNI-WQ-HV 139
L + + ++ +I+++ D+ + G+ GA DY+ KPV + EL KN+ W+ +
Sbjct: 63 LLTRELRSQSEIGIILVTGRTDSIDKIVGLEMGADDYVTKPVDLRELQVRVKNLLWRISL 122
Query: 140 IRRKKVGPKDQNKLLN 155
+R+++ K +KL++
Sbjct: 123 AQRERITDKHDDKLVH 138
>TIGR_CMR|SPO_A0237 [details] [associations]
symbol:SPO_A0237 "C4-dicarboxylate transport
transcriptional regulatory protein DctD" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003677 "DNA binding"
evidence=ISS] [GO:0015740 "C4-dicarboxylate transport"
evidence=ISS] InterPro:IPR000641 InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR00819 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 EMBL:CP000032
GenomeReviews:CP000032_GR RefSeq:YP_165066.1
ProteinModelPortal:Q5LKZ2 GeneID:3196880 KEGG:sil:SPOA0237
PATRIC:23381812 Uniprot:Q5LKZ2
Length = 446
Score = 148 (57.2 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 34/128 (26%), Positives = 66/128 (51%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L +DDD + L + L A ++V +A L +N D+++SD+ MP M G
Sbjct: 9 ILVIDDDKSMRLSLVDLLEAAGWQVEAIARATLVAAKLDDNPP--DVILSDIRMPGMTGL 66
Query: 86 KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKV 145
+LL + P++++SA+GD + ++ + GA ++ KP L +I H + ++
Sbjct: 67 ELLSSLDHASAPPLVLISAHGDIPMAVQAMRDGAYSFVEKPYEPRRLLSILTHAAEQNRM 126
Query: 146 GPKDQNKL 153
+D ++L
Sbjct: 127 -QQDNSRL 133
>TIGR_CMR|GSU_2534 [details] [associations]
symbol:GSU_2534 "sensory box/response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR000014 InterPro:IPR001054 InterPro:IPR001789
Pfam:PF00072 Pfam:PF13188 PROSITE:PS50110 SMART:SM00091
SMART:SM00448 InterPro:IPR001610 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0016849
GO:GO:0009190 InterPro:IPR000160 SMART:SM00267 TIGRFAMs:TIGR00254
PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000167205 RefSeq:NP_953580.1 ProteinModelPortal:Q74A56
GeneID:2687798 KEGG:gsu:GSU2534 PATRIC:22027917 OMA:FESVIDW
ProtClustDB:CLSK828874 BioCyc:GSUL243231:GH27-2510-MONOMER
Uniprot:Q74A56
Length = 452
Score = 148 (57.2 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 34/126 (26%), Positives = 70/126 (55%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
+R+L ++D+P ++L+ L Y+V V L +L ++DL+++D MP
Sbjct: 7 IRILYMEDNPALARLLQKSLLRKGYQVDVVADGAAGLTVLEGT--SYDLILADYDMPVCG 64
Query: 84 GFKLLEHVGLE-MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVR---IEELKNIWQHV 139
G +++ + +D+PVIM++ G K+ ++ + GA DY++K + IE L + + V
Sbjct: 65 GIEVIATLAARGVDIPVIMVTGNGSEKVAVEALKQGAADYVVKDLEMGYIELLPIVIEQV 124
Query: 140 IRRKKV 145
+ R+++
Sbjct: 125 LTRQEL 130
>TIGR_CMR|GSU_0280 [details] [associations]
symbol:GSU_0280 "transcriptional regulator, Fis family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003677 "DNA
binding" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
RefSeq:NP_951341.1 ProteinModelPortal:Q74GG5 GeneID:2687472
KEGG:gsu:GSU0280 PATRIC:22023302 OMA:ISTFETR
BioCyc:GSUL243231:GH27-330-MONOMER Uniprot:Q74GG5
Length = 450
Score = 147 (56.8 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 43/155 (27%), Positives = 79/155 (50%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L V+D+P + + LR V A++M+R D+V+SD+ MP MDG
Sbjct: 9 ILYVEDEPVLREQVVFALRMHFSRVLSACDGKEAMRMIRAECP--DVVVSDIRMPAMDGL 66
Query: 86 KLLEHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144
L + E+ DLPV++ +A +T ++K I G Y+ KP+ +E+L QH IR
Sbjct: 67 TLASLLKTELPDLPVVLCTALHETDHLLKAIELGVAAYVSKPIDLEKL----QHAIRLAS 122
Query: 145 VGPKDQNKLLN-QENSRVGAGEGGQGAMSTGNSDQ 178
+ ++ ++ + + + G G+G++ ++Q
Sbjct: 123 LPCVNRREIARLRSEAAISNGLLGEGSIMRPIAEQ 157
>UNIPROTKB|Q9KT84 [details] [associations]
symbol:luxO "Regulatory protein LuxO" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 PIR:C82250
RefSeq:NP_230666.1 ProteinModelPortal:Q9KT84 DNASU:2614291
GeneID:2614291 KEGG:vch:VC1021 PATRIC:20081144 KO:K10912
OMA:HEEGREF ProtClustDB:CLSK874182 Uniprot:Q9KT84
Length = 455
Score = 147 (56.8 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 37/157 (23%), Positives = 77/157 (49%)
Query: 29 VDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLL 88
V+D + + ++L ++ + A++ + R DL++ D+ +PDM G +L
Sbjct: 2 VEDTASVAALYRSYLTPLDIDINIVGTGRDAIESI--GRREPDLILLDLRLPDMTGMDVL 59
Query: 89 EHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKVGP 147
V + D+P++ ++A+G ++ + HGA D+L+KP + L+ + IR+
Sbjct: 60 YAVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLK 119
Query: 148 KD-QNKLLNQENSRVGAGEGGQGAMSTGNSDQNGKSN 183
D NK N + +G+ + Q T +S + K++
Sbjct: 120 NDVDNKNQNYQGF-IGSSQTMQAVYRTIDSAASSKAS 155
>TIGR_CMR|VC_1021 [details] [associations]
symbol:VC_1021 "LuxO repressor protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 PIR:C82250
RefSeq:NP_230666.1 ProteinModelPortal:Q9KT84 DNASU:2614291
GeneID:2614291 KEGG:vch:VC1021 PATRIC:20081144 KO:K10912
OMA:HEEGREF ProtClustDB:CLSK874182 Uniprot:Q9KT84
Length = 455
Score = 147 (56.8 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 37/157 (23%), Positives = 77/157 (49%)
Query: 29 VDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLL 88
V+D + + ++L ++ + A++ + R DL++ D+ +PDM G +L
Sbjct: 2 VEDTASVAALYRSYLTPLDIDINIVGTGRDAIESI--GRREPDLILLDLRLPDMTGMDVL 59
Query: 89 EHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKVGP 147
V + D+P++ ++A+G ++ + HGA D+L+KP + L+ + IR+
Sbjct: 60 YAVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLK 119
Query: 148 KD-QNKLLNQENSRVGAGEGGQGAMSTGNSDQNGKSN 183
D NK N + +G+ + Q T +S + K++
Sbjct: 120 NDVDNKNQNYQGF-IGSSQTMQAVYRTIDSAASSKAS 155
>UNIPROTKB|P0AFB8 [details] [associations]
symbol:glnG "NtrC transcriptional dual regulator"
species:83333 "Escherichia coli K-12" [GO:0050906 "detection of
stimulus involved in sensory perception" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0009399 "nitrogen fixation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000160 "phosphorelay signal transduction system" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 InterPro:IPR010114
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0009399 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:L19201 eggNOG:COG2204 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 EMBL:X05173
EMBL:D16509 PIR:B30377 RefSeq:NP_418304.1 RefSeq:YP_491582.1
ProteinModelPortal:P0AFB8 SMR:P0AFB8 IntAct:P0AFB8
EnsemblBacteria:EBESCT00000001207 EnsemblBacteria:EBESCT00000001208
EnsemblBacteria:EBESCT00000001209 EnsemblBacteria:EBESCT00000015316
GeneID:12933634 GeneID:948361 KEGG:ecj:Y75_p3318 KEGG:eco:b3868
PATRIC:32123239 EchoBASE:EB0380 EcoGene:EG10385 KO:K07712
OMA:ARGQSNL ProtClustDB:PRK10923 BioCyc:EcoCyc:PROTEIN-NRI
BioCyc:ECOL316407:JW3839-MONOMER BindingDB:P0AFB8 ChEMBL:CHEMBL3552
Genevestigator:P0AFB8 GO:GO:0050906 TIGRFAMs:TIGR01818
Uniprot:P0AFB8
Length = 469
Score = 147 (56.8 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 41/131 (31%), Positives = 60/131 (45%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
V VDDD + VLE L T L+ L D+++SD+ MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTP--DVLLSDIRMPGMDGL 63
Query: 86 KLLEHVGLEMD-LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144
LL+ + LPVI+++A+ D + GA DYL KP I+E + + I +
Sbjct: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQ 123
Query: 145 VGPKDQNKLLN 155
+ +N LN
Sbjct: 124 EQQQPRNVQLN 134
>UNIPROTKB|Q9KNN9 [details] [associations]
symbol:VC_2692 "Transcriptional regulator CpxR"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0035556 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
KO:K07662 HSSP:P08402 PIR:B82046 RefSeq:NP_232320.1
ProteinModelPortal:Q9KNN9 DNASU:2615520 GeneID:2615520
KEGG:vch:VC2692 PATRIC:20084402 OMA:HEYGDIK ProtClustDB:CLSK874884
Uniprot:Q9KNN9
Length = 228
Score = 139 (54.0 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 39/134 (29%), Positives = 69/134 (51%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L +DDD +L L+ +E++ N L + + DL++ DV MP ++G
Sbjct: 4 ILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAVSDE---IDLILLDVMMPKLNGM 60
Query: 86 KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKV 145
+ L+ + + PV+ML+A G+ + G+ GA DYL KP EL + ++RR +
Sbjct: 61 ETLKRLREKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQN 120
Query: 146 G--PKDQNKLLNQE 157
G PK+ + + Q+
Sbjct: 121 GLTPKNSDVIECQD 134
>TIGR_CMR|VC_2692 [details] [associations]
symbol:VC_2692 "transcriptional regulator CpxR" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0035556 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
KO:K07662 HSSP:P08402 PIR:B82046 RefSeq:NP_232320.1
ProteinModelPortal:Q9KNN9 DNASU:2615520 GeneID:2615520
KEGG:vch:VC2692 PATRIC:20084402 OMA:HEYGDIK ProtClustDB:CLSK874884
Uniprot:Q9KNN9
Length = 228
Score = 139 (54.0 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 39/134 (29%), Positives = 69/134 (51%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L +DDD +L L+ +E++ N L + + DL++ DV MP ++G
Sbjct: 4 ILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAVSDE---IDLILLDVMMPKLNGM 60
Query: 86 KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKV 145
+ L+ + + PV+ML+A G+ + G+ GA DYL KP EL + ++RR +
Sbjct: 61 ETLKRLREKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQN 120
Query: 146 G--PKDQNKLLNQE 157
G PK+ + + Q+
Sbjct: 121 GLTPKNSDVIECQD 134
>UNIPROTKB|Q7D1A5 [details] [associations]
symbol:cheY "Chemotaxis receiver protein" species:176299
"Agrobacterium fabrum str. C58" [GO:0006928 "cellular component
movement" evidence=IGC] [GO:0052143 "chemotaxis on or near host
involved in symbiotic interaction" evidence=IGC] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0006928 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:AE007869 GenomeReviews:AE007869_GR
GO:GO:0052143 KO:K03413 ProtClustDB:CLSK800134 HSSP:P06143
RefSeq:NP_353549.1 ProteinModelPortal:Q7D1A5 SMR:Q7D1A5
STRING:Q7D1A5 GeneID:1132558 KEGG:atu:Atu0520 PATRIC:20810743
OMA:FKQITAA Uniprot:Q7D1A5
Length = 129
Score = 124 (48.7 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 37/114 (32%), Positives = 57/114 (50%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQY-EVTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++VL VDD T +L + L + ++T LK++ + ++ LVISD +MP M
Sbjct: 7 IKVLIVDDQVTSRLLLSDALTQLGFKQITSAGDGEQGLKIMEQQPHH--LVISDFNMPKM 64
Query: 83 DGFKLLEHVGLE---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELK 133
DG L V I+L+A GD LV K GA + L KP I++++
Sbjct: 65 DGLGFLHAVRANPTTKKAAFIILTAQGDRALVQKAAQLGANNVLAKPFTIDKMR 118
>TIGR_CMR|GSU_3198 [details] [associations]
symbol:GSU_3198 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 RefSeq:NP_954239.1
HSSP:P04042 ProteinModelPortal:Q747R7 GeneID:2687002
KEGG:gsu:GSU3198 PATRIC:22029251 OMA:PSARIIM ProtClustDB:CLSK829154
BioCyc:GSUL243231:GH27-3148-MONOMER Uniprot:Q747R7
Length = 121
Score = 124 (48.7 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 36/117 (30%), Positives = 57/117 (48%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTV-TNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
RV+ VDD +L L YEV + A+ R+ R D+V D+ MP +
Sbjct: 4 RVMIVDDALFMRNMLRGILEDAGYEVVAEASDGAEAVVTFRDVRP--DVVTLDIIMPVKN 61
Query: 84 GFKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139
G + L + ++ V++ SA G LV K + GA D++LKP E +K++ + V
Sbjct: 62 GIEALREIMAIDPKARVVICSAVGQESLVDKARSVGAKDFILKPFNPERVKDVMKQV 118
>NCBI_NP|NP_353549.1 [details] [associations]
symbol:cheY "chemotaxisreceiverprotein" species:176299
"Agrobacterium fabrum str. C58" [GO:0052143 "chemotaxis on or near
host involved in symbiotic interaction" evidence=IGC] [GO:0006928
"cellular component movement" evidence=IGC] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
REFSEQ:NC_003062 Ncbi:NP_353549
Length = 129
Score = 124 (48.7 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 37/114 (32%), Positives = 57/114 (50%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQY-EVTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++VL VDD T +L + L + ++T LK++ + ++ LVISD +MP M
Sbjct: 7 IKVLIVDDQVTSRLLLSDALTQLGFKQITSAGDGEQGLKIMEQQPHH--LVISDFNMPKM 64
Query: 83 DGFKLLEHVGLE---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELK 133
DG L V I+L+A GD LV K GA + L KP I++++
Sbjct: 65 DGLGFLHAVRANPTTKKAAFIILTAQGDRALVQKAAQLGANNVLAKPFTIDKMR 118
>TAIR|locus:2125771 [details] [associations]
symbol:AT4G04580 "AT4G04580" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
EMBL:AL161501 Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 EMBL:AF074021 IPI:IPI00541303 PIR:G85057
RefSeq:NP_192367.1 UniGene:At.54143 ProteinModelPortal:Q9XEB2
SMR:Q9XEB2 EnsemblPlants:AT4G04580.1 GeneID:825790
KEGG:ath:AT4G04580 TAIR:At4g04580 eggNOG:NOG300503
HOGENOM:HOG000153846 InParanoid:Q9XEB2 OMA:RDLTISH PhylomeDB:Q9XEB2
ProtClustDB:CLSN2915807 ArrayExpress:Q9XEB2 Genevestigator:Q9XEB2
Uniprot:Q9XEB2
Length = 166
Score = 124 (48.7 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 30/83 (36%), Positives = 48/83 (57%)
Query: 213 PRVVWTPELHRKFVGAVNQLGVDK-AVPKKILDLMNVEGLTRENVASHLQKFRLYLKRLS 271
PR+ WT +L +F+ + +LG ++ A PK+IL LM V LT +V SHLQ +R K+
Sbjct: 15 PRMHWTDDLDIRFIQVIEKLGGEESATPKRILSLMGVRDLTISHVKSHLQMYRN--KKKE 72
Query: 272 NETPQAGMVAALGSKDSS-YLRI 293
+ + M+ + + S YL+I
Sbjct: 73 ESSKEIKMMREMTQRQSQQYLQI 95
>TIGR_CMR|BA_2561 [details] [associations]
symbol:BA_2561 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:Q9WYN0 RefSeq:NP_844929.1
RefSeq:YP_019199.1 RefSeq:YP_028645.1 ProteinModelPortal:Q81Q72
DNASU:1085788 EnsemblBacteria:EBBACT00000009128
EnsemblBacteria:EBBACT00000014330 EnsemblBacteria:EBBACT00000023961
GeneID:1085788 GeneID:2819548 GeneID:2848970 KEGG:ban:BA_2561
KEGG:bar:GBAA_2561 KEGG:bat:BAS2385 OMA:LETVMNG
ProtClustDB:CLSK916690 BioCyc:BANT260799:GJAJ-2450-MONOMER
BioCyc:BANT261594:GJ7F-2538-MONOMER Uniprot:Q81Q72
Length = 231
Score = 139 (54.0 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 37/140 (26%), Positives = 72/140 (51%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L +DDD +++L +LR Y + AL+M+ + DL+I D+ MP +G
Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMI--STYEVDLMILDIMMPKRNGL 62
Query: 86 KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKV 145
++ + V +P++MLSA + + G+ GA DY++KP EL + ++RR
Sbjct: 63 EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122
Query: 146 ----GPKDQNKLLNQENSRV 161
PK+++ ++ ++ +
Sbjct: 123 QNASSPKNEDGMIRIRSAEI 142
>TIGR_CMR|CBU_2006 [details] [associations]
symbol:CBU_2006 "DNA-binding response regulator"
species:227377 "Coxiella burnetii RSA 493" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 HSSP:P08402 KO:K02483
RefSeq:NP_820981.1 ProteinModelPortal:Q83AA0 PRIDE:Q83AA0
GeneID:1209919 KEGG:cbu:CBU_2006 PATRIC:17932757 OMA:AKNGSEM
ProtClustDB:CLSK915183 BioCyc:CBUR227377:GJ7S-1980-MONOMER
Uniprot:Q83AA0
Length = 245
Score = 140 (54.3 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 40/132 (30%), Positives = 61/132 (46%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L VDDD +L FLR +E ++ +L + DLVI D+ MP DG
Sbjct: 7 ILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQAILLKQA--VDLVILDIMMPGDDGL 64
Query: 86 KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKV 145
L + +P++ML+A + + G+ GA DYL KP EL + ++RR +
Sbjct: 65 TLCRQMRANSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRSQG 124
Query: 146 GPKDQNKLLNQE 157
G N + E
Sbjct: 125 GGGSLNGIGTNE 136
>UNIPROTKB|E1WEB4 [details] [associations]
symbol:cpxR "Two-component response regulatory protein"
species:216597 "Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 OMA:YQTPVIM EMBL:FQ312003 GenomeReviews:FQ312003_GR
RefSeq:YP_005183876.1 ProteinModelPortal:E1WEB4 IntAct:E1WEB4
PRIDE:E1WEB4 GeneID:11767742 KEGG:sey:SL1344_4008 PATRIC:43194339
Uniprot:E1WEB4
Length = 232
Score = 139 (54.0 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 40/127 (31%), Positives = 63/127 (49%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L VDDD +L+ L + V V + AL++L ++ DL++ DV MP +G
Sbjct: 3 KILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELLDDS---IDLLLLDVMMPKKNG 59
Query: 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144
L+ + PVIML+A G + G+ GA DYL KP EL + ++RR
Sbjct: 60 IDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSH 119
Query: 145 VGPKDQN 151
+ Q+
Sbjct: 120 WSEQQQS 126
>UNIPROTKB|Q485M3 [details] [associations]
symbol:flrC "Flagellar regulatory protein C" species:167879
"Colwellia psychrerythraea 34H" [GO:0001539 "ciliary or flagellar
motility" evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0030092 "regulation of flagellum assembly"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0019861 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 HOGENOM:HOG000058489 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539
GO:GO:0030092 RefSeq:YP_268242.1 ProteinModelPortal:Q485M3
STRING:Q485M3 GeneID:3520612 KEGG:cps:CPS_1500 PATRIC:21466207
KO:K10943 OMA:FRETRND ProtClustDB:CLSK874687
BioCyc:CPSY167879:GI48-1581-MONOMER Uniprot:Q485M3
Length = 446
Score = 146 (56.5 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 37/126 (29%), Positives = 62/126 (49%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L V+DD + L + L Y + AL L+ + D+VISDV M M G
Sbjct: 5 KILVVEDDAGLREALIDTLSLADYHCVEADSGEAALLALKSQ--HVDIVISDVQMGGMSG 62
Query: 85 FKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143
LL+ + +LPV++++A+G ++ + GAC+Y+ KP + L N+ I +
Sbjct: 63 LSLLKSIKNHHANLPVLLMTAFGTIDDAVQAMKDGACNYIAKPFAPQVLLNMVSQYIPPQ 122
Query: 144 KVGPKD 149
V D
Sbjct: 123 VVNKND 128
>TIGR_CMR|CPS_1500 [details] [associations]
symbol:CPS_1500 "flagellar regulatory protein C"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0019861 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092
RefSeq:YP_268242.1 ProteinModelPortal:Q485M3 STRING:Q485M3
GeneID:3520612 KEGG:cps:CPS_1500 PATRIC:21466207 KO:K10943
OMA:FRETRND ProtClustDB:CLSK874687
BioCyc:CPSY167879:GI48-1581-MONOMER Uniprot:Q485M3
Length = 446
Score = 146 (56.5 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 37/126 (29%), Positives = 62/126 (49%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L V+DD + L + L Y + AL L+ + D+VISDV M M G
Sbjct: 5 KILVVEDDAGLREALIDTLSLADYHCVEADSGEAALLALKSQ--HVDIVISDVQMGGMSG 62
Query: 85 FKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143
LL+ + +LPV++++A+G ++ + GAC+Y+ KP + L N+ I +
Sbjct: 63 LSLLKSIKNHHANLPVLLMTAFGTIDDAVQAMKDGACNYIAKPFAPQVLLNMVSQYIPPQ 122
Query: 144 KVGPKD 149
V D
Sbjct: 123 VVNKND 128
>TAIR|locus:2027237 [details] [associations]
symbol:ARR15 "response regulator 15" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=IGI;RCA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007623
"circadian rhythm" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC008263 EMBL:AC013258
EMBL:AF305720 IPI:IPI00538856 RefSeq:NP_177627.1 UniGene:At.11589
ProteinModelPortal:Q7G8V2 SMR:Q7G8V2 IntAct:Q7G8V2 STRING:Q7G8V2
EnsemblPlants:AT1G74890.1 GeneID:843828 KEGG:ath:AT1G74890
GeneFarm:4128 TAIR:At1g74890 HOGENOM:HOG000034820 InParanoid:Q7G8V2
KO:K14492 OMA:KISACKV PhylomeDB:Q7G8V2 ProtClustDB:CLSN2914197
Genevestigator:Q7G8V2 GermOnline:AT1G74890 Uniprot:Q7G8V2
Length = 206
Score = 136 (52.9 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 41/168 (24%), Positives = 83/168 (49%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNN---------FDLVI 74
+ VLAVDD KV+E L+ +VT AL+ L + +N +L++
Sbjct: 18 LHVLAVDDSFVDRKVIERLLKISACKVTTVESGTRALQYLGLDGDNGSSGLKDLKVNLIV 77
Query: 75 SDVHMPDMDGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEE 131
+D MP + G++LL+ + ++PV+++S+ + + + GA ++LLKPV++ +
Sbjct: 78 TDYSMPGLTGYELLKKIKESSALREIPVVIMSSENIQPRIEQCMIEGAEEFLLKPVKLAD 137
Query: 132 LKNIWQHVIRRKKVGPKDQNKLLNQENSRVGAGEGGQGAMSTGNSDQN 179
+K + + +I R + + K L+ + + + ST +S +
Sbjct: 138 VKRL-KELIMRGGEAEEGKTKKLSPKRILQNDIDSSPSSSSTSSSSSS 184
>TIGR_CMR|BA_5504 [details] [associations]
symbol:BA_5504 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_847664.1 RefSeq:YP_022171.1 RefSeq:YP_031352.1
ProteinModelPortal:Q81K35 DNASU:1085148
EnsemblBacteria:EBBACT00000010087 EnsemblBacteria:EBBACT00000018699
EnsemblBacteria:EBBACT00000023974 GeneID:1085148 GeneID:2819097
GeneID:2848975 KEGG:ban:BA_5504 KEGG:bar:GBAA_5504 KEGG:bat:BAS5113
OMA:NMARRVK ProtClustDB:CLSK899140
BioCyc:BANT260799:GJAJ-5188-MONOMER
BioCyc:BANT261594:GJ7F-5366-MONOMER Uniprot:Q81K35
Length = 223
Score = 138 (53.6 bits), Expect = 8.3e-07, P = 8.3e-07
Identities = 41/127 (32%), Positives = 65/127 (51%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
M++L VDD+ + ++ L YEV L+ E D++I DV +PD D
Sbjct: 1 MKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREVLERWNEGP---DVLILDVMLPDTD 57
Query: 84 GFKLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL----KNIWQH 138
G++LL + D+PV+ML+A + G+ GA DY+ KP EL KN+ +
Sbjct: 58 GYELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117
Query: 139 VIRRKKV 145
V ++K+V
Sbjct: 118 V-KKKEV 123
>TIGR_CMR|GSU_0470 [details] [associations]
symbol:GSU_0470 "sigma-54 dependent response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_951529.1 ProteinModelPortal:Q74FY2 GeneID:2686241
KEGG:gsu:GSU0470 PATRIC:22023688 OMA:QYRLREY ProtClustDB:CLSK827855
BioCyc:GSUL243231:GH27-461-MONOMER Uniprot:Q74FY2
Length = 453
Score = 146 (56.5 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 35/106 (33%), Positives = 57/106 (53%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
R+L +DD T L L+ Y++ AL +LR R +FDLV+SD+ MP + G
Sbjct: 4 RILIAEDDSTFRGFLRTVLKGEGYDIREAADGEEALALLR--RESFDLVLSDLRMPGIGG 61
Query: 85 FKLLEHVGLEMDLP--VIMLSAYGDTKLVMKGITHGACDYLLKPVR 128
+LL + D P ++L+A+G + + + GA D+L KP++
Sbjct: 62 LELLR-ASRDDDYPPAFVILTAFGTIEEAVAAVKEGAADFLTKPLK 106
>TIGR_CMR|GSU_2915 [details] [associations]
symbol:GSU_2915 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 RefSeq:NP_953957.1
ProteinModelPortal:Q748T6 GeneID:2688534 KEGG:gsu:GSU2915
PATRIC:22028689 OMA:AFRYRMK ProtClustDB:CLSK829000
BioCyc:GSUL243231:GH27-2910-MONOMER Uniprot:Q748T6
Length = 457
Score = 146 (56.5 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 35/139 (25%), Positives = 75/139 (53%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L VDD+ LE L+ Y+V AL+++RE + DLV+ D+ +P + G
Sbjct: 5 KILVVDDEHLIRWSLEQNLKKQGYDVVSAGNGEDALRIVREEQP--DLVLLDIQLPGISG 62
Query: 85 FKLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143
+ LE + + ++ VIM++A+G + + + GA DY+ KP ++E+ + + +
Sbjct: 63 LEALEKIKEYDEEILVIMVTAHGALETAVHAMRLGAYDYINKPFNLDEMSIVIRKALETS 122
Query: 144 KVGPKDQNKLLNQENSRVG 162
+ ++ +L ++++ + G
Sbjct: 123 DLR-REVQRLRSEQSRKFG 140
>TIGR_CMR|GSU_0451 [details] [associations]
symbol:GSU_0451 "DNA-binding response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
RefSeq:NP_951510.1 ProteinModelPortal:Q74G01 GeneID:2686349
KEGG:gsu:GSU0451 PATRIC:22023646 OMA:MRRSELD ProtClustDB:CLSK827838
BioCyc:GSUL243231:GH27-442-MONOMER Uniprot:Q74G01
Length = 224
Score = 138 (53.6 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 35/122 (28%), Positives = 61/122 (50%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
M+VL V+D+ ++ L +YEV LKM + +DL++ DV +P D
Sbjct: 1 MKVLVVEDEKKVSSFIKRGLEEEKYEVDAAFNGEEGLKMALDK--GYDLIVLDVMLPKKD 58
Query: 84 GFKLLEHVGLEMD-LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
G ++ + + PV+ML+A + ++ G+ G+ DYL KP EL + ++RR
Sbjct: 59 GLSVVRELRERKNSTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALVRR 118
Query: 143 KK 144
+
Sbjct: 119 SE 120
>TIGR_CMR|CPS_4164 [details] [associations]
symbol:CPS_4164 "response regulator/phosphatase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0016791 "phosphatase activity" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081 eggNOG:COG3437
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 RefSeq:YP_270816.1
ProteinModelPortal:Q47WK6 STRING:Q47WK6 GeneID:3518511
KEGG:cps:CPS_4164 PATRIC:21471189 OMA:CELIYNA
BioCyc:CPSY167879:GI48-4174-MONOMER Uniprot:Q47WK6
Length = 352
Score = 143 (55.4 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 37/107 (34%), Positives = 58/107 (54%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
VL VDD+ L VL LR Y+V ALK+ +N D+++ D+ MP MDG+
Sbjct: 16 VLIVDDNSDNLDVLSGVLRPF-YKVKAAINGELALKVASA-KNKPDIILLDIMMPGMDGY 73
Query: 86 KLLEHVGLE---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRI 129
++ + + L ++PVI ++A +TK G GA DY+ KP+ +
Sbjct: 74 EVCQQLKLNPSTANIPVIFVTAKTETKDEEAGFKLGAVDYITKPISV 120
>UNIPROTKB|Q9KNI9 [details] [associations]
symbol:VC_2749 "Nitrogen regulation protein NR(I)"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0006808 "regulation of nitrogen utilization"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
InterPro:IPR010114 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0009399 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006808
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K07712
OMA:ARGQSNL GO:GO:0050906 TIGRFAMs:TIGR01818 HSSP:P41789 PIR:D82038
RefSeq:NP_232375.1 ProteinModelPortal:Q9KNI9 SMR:Q9KNI9
DNASU:2614912 GeneID:2614912 KEGG:vch:VC2749 PATRIC:20084518
ProtClustDB:CLSK874911 Uniprot:Q9KNI9
Length = 468
Score = 145 (56.1 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 42/141 (29%), Positives = 67/141 (47%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
V VDDD + V+E L + + A + L L R D+++SD+ MP MDG
Sbjct: 8 VWVVDDDSSIRWVMEKTLSSAHIKCETFADAESVLLALE--RETPDVLVSDIRMPGMDGI 65
Query: 86 KLLEHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144
LL V +LPVI+++A+ D + GA +YL KP ++E + + I
Sbjct: 66 ALLNQVHQRTPELPVIIMTAHSDLDAAVNAYQQGAFEYLPKPFDVDETLTLVERAIAH-- 123
Query: 145 VGPKDQNKLLNQENSRVGAGE 165
G ++Q K ++ + A E
Sbjct: 124 -G-QEQRKTSHRPSENYSAPE 142
>TIGR_CMR|VC_2749 [details] [associations]
symbol:VC_2749 "nitrogen regulation protein NR(I)"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006808 "regulation of nitrogen utilization" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 InterPro:IPR010114
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0009399 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006808 InterPro:IPR025662
InterPro:IPR025943 InterPro:IPR025944 PROSITE:PS00675
PROSITE:PS00676 PROSITE:PS00688 KO:K07712 OMA:ARGQSNL GO:GO:0050906
TIGRFAMs:TIGR01818 HSSP:P41789 PIR:D82038 RefSeq:NP_232375.1
ProteinModelPortal:Q9KNI9 SMR:Q9KNI9 DNASU:2614912 GeneID:2614912
KEGG:vch:VC2749 PATRIC:20084518 ProtClustDB:CLSK874911
Uniprot:Q9KNI9
Length = 468
Score = 145 (56.1 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 42/141 (29%), Positives = 67/141 (47%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
V VDDD + V+E L + + A + L L R D+++SD+ MP MDG
Sbjct: 8 VWVVDDDSSIRWVMEKTLSSAHIKCETFADAESVLLALE--RETPDVLVSDIRMPGMDGI 65
Query: 86 KLLEHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144
LL V +LPVI+++A+ D + GA +YL KP ++E + + I
Sbjct: 66 ALLNQVHQRTPELPVIIMTAHSDLDAAVNAYQQGAFEYLPKPFDVDETLTLVERAIAH-- 123
Query: 145 VGPKDQNKLLNQENSRVGAGE 165
G ++Q K ++ + A E
Sbjct: 124 -G-QEQRKTSHRPSENYSAPE 142
>TIGR_CMR|BA_0924 [details] [associations]
symbol:BA_0924 "response regulator" species:198094
"Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR024187 Pfam:PF00072 PIRSF:PIRSF006171 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0009605
GO:GO:0001071 HOGENOM:HOG000034816 HSSP:P52934 RefSeq:NP_843430.1
RefSeq:YP_017559.1 RefSeq:YP_027146.1 ProteinModelPortal:Q81UF3
DNASU:1088846 EnsemblBacteria:EBBACT00000010567
EnsemblBacteria:EBBACT00000014513 EnsemblBacteria:EBBACT00000020811
GeneID:1088846 GeneID:2817504 GeneID:2850213 KEGG:ban:BA_0924
KEGG:bar:GBAA_0924 KEGG:bat:BAS0870 KO:K11638 OMA:GEKMGAS
ProtClustDB:CLSK886856 BioCyc:BANT260799:GJAJ-950-MONOMER
BioCyc:BANT261594:GJ7F-988-MONOMER Uniprot:Q81UF3
Length = 225
Score = 137 (53.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 38/135 (28%), Positives = 71/135 (52%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRE-NRNNFDLVISDVHMPDM 82
++V +DD ++ E FL + +V V +A+ A + + R DL++ D ++PD
Sbjct: 2 LKVAIAEDDFRVAQIQEEFLLKIK-DVKVMGKALNAKETMELLQREEIDLLLLDNYLPDG 60
Query: 83 DGFKLLEHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141
G LL + E ++ VIM++A + ++ K I +G +YL+KPV +E+ + R
Sbjct: 61 IGTDLLPQIHAEFPNVDVIMVTAANENHMLEKAIRNGVSNYLIKPVTLEKFVRTIEDYKR 120
Query: 142 RKKVGPKDQNKLLNQ 156
+K++ N +NQ
Sbjct: 121 KKQL--LHNNNEVNQ 133
>UNIPROTKB|Q1CXR3 [details] [associations]
symbol:difD "Fibril biogenesis regulator DifD"
species:246197 "Myxococcus xanthus DK 1622" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:CP000113 GenomeReviews:CP000113_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_634810.1
ProteinModelPortal:Q1CXR3 SMR:Q1CXR3 IntAct:Q1CXR3 STRING:Q1CXR3
GeneID:4104566 KEGG:mxa:MXAN_6693 PATRIC:22655877 OMA:PFQAPKV
ProtClustDB:CLSK947176 BioCyc:MXAN246197:GIWU-6635-MONOMER
Uniprot:Q1CXR3
Length = 122
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 35/118 (29%), Positives = 59/118 (50%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRN-NFDLVISDVHMPDMD 83
RVL VDD ++++ + +EV +A L+ + + + DL D+ MP
Sbjct: 4 RVLVVDDAIFMRNMIKDIFASGGFEVV--GEAANGLEAVEKYKELKPDLTTMDIVMPFKS 61
Query: 84 GFKLL-EHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140
G + E + + VIM SA G LVM+ I GA D+++KP R E++ + + V+
Sbjct: 62 GIEATREIIKADSSAVVIMCSALGQESLVMEAIEAGASDFIVKPFRAEDVLAVVKKVL 119
>UNIPROTKB|Q8EEQ6 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:KLANYKF
HSSP:P06143 RefSeq:NP_717910.1 ProteinModelPortal:Q8EEQ6
GeneID:1170042 KEGG:son:SO_2318 PATRIC:23524259 Uniprot:Q8EEQ6
Length = 121
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 36/105 (34%), Positives = 52/105 (49%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L VDD + V+ LR YEV AL L N + +L+ISDV+MP+MDG
Sbjct: 3 KILVVDDSASIRHVVSIALRGAGYEVIDACDGKDALSKL--NGDKINLIISDVNMPNMDG 60
Query: 85 FKLLEHVGLEMDL---PVIMLSAYGDTKLVMKGITHGACDYLLKP 126
L+ V PVIML+ + +G GA +++KP
Sbjct: 61 ISFLKEVKKHPRYKFTPVIMLTTEAGRDKMEEGRMAGAKAWVVKP 105
>TIGR_CMR|SO_2318 [details] [associations]
symbol:SO_2318 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
OMA:KLANYKF HSSP:P06143 RefSeq:NP_717910.1
ProteinModelPortal:Q8EEQ6 GeneID:1170042 KEGG:son:SO_2318
PATRIC:23524259 Uniprot:Q8EEQ6
Length = 121
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 36/105 (34%), Positives = 52/105 (49%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L VDD + V+ LR YEV AL L N + +L+ISDV+MP+MDG
Sbjct: 3 KILVVDDSASIRHVVSIALRGAGYEVIDACDGKDALSKL--NGDKINLIISDVNMPNMDG 60
Query: 85 FKLLEHVGLEMDL---PVIMLSAYGDTKLVMKGITHGACDYLLKP 126
L+ V PVIML+ + +G GA +++KP
Sbjct: 61 ISFLKEVKKHPRYKFTPVIMLTTEAGRDKMEEGRMAGAKAWVVKP 105
>TIGR_CMR|SO_4388 [details] [associations]
symbol:SO_4388 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_719912.1 ProteinModelPortal:Q8E997 GeneID:1171990
KEGG:son:SO_4388 PATRIC:23528433 ProtClustDB:CLSK889389
Uniprot:Q8E997
Length = 227
Score = 137 (53.3 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 40/133 (30%), Positives = 68/133 (51%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
M++L +DD + L + L Y V + + AL L+ + D +I D+ MP++D
Sbjct: 1 MKILIAEDDIHIRQGLADMLSREGYSVLLADNGKVAL--LKYQQEQPDFIILDIMMPELD 58
Query: 84 GFKLLEHVGL-EMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEE----LKNIWQH 138
G+ + + + + PVI LSA G+ + G+ GA DY+ KP I E +K I +
Sbjct: 59 GYSVCKEIRKHDEQTPVIFLSAKGEELDKVLGLELGADDYINKPFGIHEVRARIKTIARR 118
Query: 139 VIRRKKVGPKDQN 151
++ K+ P DQ+
Sbjct: 119 CLKAKQNSP-DQS 130
>UNIPROTKB|Q746Z1 [details] [associations]
symbol:GSU3376 "Response receiver-modulated diguanylate
cyclase" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_954416.1 HSSP:P06143
ProteinModelPortal:Q746Z1 GeneID:2686891 KEGG:gsu:GSU3376
PATRIC:22029607 HOGENOM:HOG000167205 OMA:LTHLHNR
ProtClustDB:CLSK829255 BioCyc:GSUL243231:GH27-3335-MONOMER
Uniprot:Q746Z1
Length = 308
Score = 141 (54.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 41/140 (29%), Positives = 69/140 (49%)
Query: 22 IGMRVLAVDDDPTCLKVLENFLRACQ-YEVTV-TNQAVTALKMLRENRNNFDLVISDVHM 79
+ M L +DD + + L+ + +E + + K L N+ DLV+ D+ M
Sbjct: 1 MAMTALVIDDSEVLREEIVRTLKEARLFETYLEARDGLEGFKTLLNNK--VDLVLCDLEM 58
Query: 80 PDMDGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIW 136
P MDGF+ L G DLP+I+L++ D ++G+ GA DY+ KP EL +
Sbjct: 59 PRMDGFRFLSMTRSRGELQDLPIILLTSREDRDTKIRGLEQGASDYVTKPFDSGEL--VA 116
Query: 137 QHVIRRKKVGPKDQNKLLNQ 156
+ ++ K G +D+ K N+
Sbjct: 117 RVRVQMKVKGLQDELKRSNE 136
>TIGR_CMR|GSU_3376 [details] [associations]
symbol:GSU_3376 "GGDEF/response regulator receiver domain
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_954416.1 HSSP:P06143
ProteinModelPortal:Q746Z1 GeneID:2686891 KEGG:gsu:GSU3376
PATRIC:22029607 HOGENOM:HOG000167205 OMA:LTHLHNR
ProtClustDB:CLSK829255 BioCyc:GSUL243231:GH27-3335-MONOMER
Uniprot:Q746Z1
Length = 308
Score = 141 (54.7 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 41/140 (29%), Positives = 69/140 (49%)
Query: 22 IGMRVLAVDDDPTCLKVLENFLRACQ-YEVTV-TNQAVTALKMLRENRNNFDLVISDVHM 79
+ M L +DD + + L+ + +E + + K L N+ DLV+ D+ M
Sbjct: 1 MAMTALVIDDSEVLREEIVRTLKEARLFETYLEARDGLEGFKTLLNNK--VDLVLCDLEM 58
Query: 80 PDMDGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIW 136
P MDGF+ L G DLP+I+L++ D ++G+ GA DY+ KP EL +
Sbjct: 59 PRMDGFRFLSMTRSRGELQDLPIILLTSREDRDTKIRGLEQGASDYVTKPFDSGEL--VA 116
Query: 137 QHVIRRKKVGPKDQNKLLNQ 156
+ ++ K G +D+ K N+
Sbjct: 117 RVRVQMKVKGLQDELKRSNE 136
>TIGR_CMR|CHY_2047 [details] [associations]
symbol:CHY_2047 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_360866.1
ProteinModelPortal:Q3AAG8 SMR:Q3AAG8 STRING:Q3AAG8 GeneID:3727851
KEGG:chy:CHY_2047 PATRIC:21277175 KO:K07658 OMA:WGYEFSG
ProtClustDB:CLSK2772343 BioCyc:CHYD246194:GJCN-2046-MONOMER
Uniprot:Q3AAG8
Length = 231
Score = 137 (53.3 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 34/112 (30%), Positives = 64/112 (57%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
M++L VDD+ +++++ L Y+V + AL+++++ DLVI D+ +P M
Sbjct: 1 MKILVVDDEAPIVELIKFNLEREGYKVLEAYDGIRALEIVKKELP--DLVILDIMLPGMS 58
Query: 84 GFKLLEHVGLE---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
G ++ +++ ++P+IMLSA G+ + G+ GA DY++KP EL
Sbjct: 59 GLEVCKNIRNNEKTAEIPIIMLSARGEEVDKILGLELGADDYMVKPFSPREL 110
>TIGR_CMR|ECH_0773 [details] [associations]
symbol:ECH_0773 "putative response regulator/diguanylate
cyclase" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0004871 "signal transducer activity"
evidence=ISS] [GO:0007165 "signal transduction" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0005622 SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG3706 KO:K02488 HOGENOM:HOG000167204
ProtClustDB:PRK09581 RefSeq:YP_507571.1 ProteinModelPortal:Q2GG62
STRING:Q2GG62 GeneID:3927207 KEGG:ech:ECH_0773 PATRIC:20576976
OMA:PDICARY BioCyc:ECHA205920:GJNR-776-MONOMER Uniprot:Q2GG62
Length = 458
Score = 144 (55.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 33/107 (30%), Positives = 62/107 (57%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
+VL VDD P +K+L+ L + Y V + A+K+ E D+++ DV MP+MDG
Sbjct: 4 KVLIVDDLPANIKLLQAKLMSEYYNVLTATNGMDAIKIAEEKHP--DIILLDVMMPEMDG 61
Query: 85 FKLLEHVGLEMD---LPVIMLSAYGDTK-LVMKGITHGACDYLLKPV 127
++ + + + +P++M++A +T + G+++GA D+L KP+
Sbjct: 62 YETCKRLKSNPETTYIPIVMVTALDNTSDNRVSGLSYGADDFLTKPI 108
>UNIPROTKB|P30843 [details] [associations]
symbol:basR "BasR transcriptional regulator" species:83333
"Escherichia coli K-12" [GO:0035556 "intracellular signal
transduction" evidence=IEA;IDA] [GO:0010041 "response to iron(III)
ion" evidence=IEP;IMP] [GO:0046677 "response to antibiotic"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA;IDA]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA;IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005737 GO:GO:0006355 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0046677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
EMBL:U14003 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 GO:GO:0010041 EMBL:D14055 EMBL:AY725270
EMBL:AY725271 EMBL:AY725272 EMBL:AY725273 EMBL:AY725274
EMBL:AY725275 EMBL:AY725276 EMBL:AY725277 EMBL:AY725278
EMBL:AY725279 EMBL:AY725280 EMBL:AY725281 EMBL:AY725282
EMBL:AY725283 EMBL:AY725284 EMBL:AY725285 EMBL:AY725286
EMBL:AY725287 EMBL:AY725288 EMBL:AY725289 EMBL:AY725290
EMBL:AY725291 EMBL:AY725292 EMBL:AY725293 EMBL:AY725294
EMBL:AY725295 EMBL:AY725296 EMBL:AY725297 EMBL:AY725298
EMBL:AY725299 EMBL:AY725300 EMBL:AY725301 EMBL:AY725302
EMBL:AY725303 EMBL:AY725304 EMBL:AY725305 EMBL:AY725306
EMBL:AY725307 EMBL:AY725308 EMBL:AY725309 EMBL:AY725310
EMBL:AY725311 EMBL:AY725312 EMBL:AY725313 EMBL:AY725314
EMBL:AY725315 EMBL:AY725316 EMBL:AY725317 EMBL:AY725318
EMBL:AY725319 EMBL:AY725320 EMBL:AY725321 EMBL:AY725322
EMBL:AY725323 EMBL:AY725324 EMBL:AY725325 EMBL:AY725326
EMBL:AY725327 EMBL:AY725328 EMBL:AY725329 EMBL:AY725330
EMBL:AY725331 EMBL:AY725332 EMBL:AY725333 PIR:H65220
RefSeq:NP_418537.1 RefSeq:YP_492256.1 ProteinModelPortal:P30843
SMR:P30843 DIP:DIP-9201N IntAct:P30843 PRIDE:P30843
EnsemblBacteria:EBESCT00000004571 EnsemblBacteria:EBESCT00000015954
GeneID:12934089 GeneID:948631 KEGG:ecj:Y75_p4000 KEGG:eco:b4113
PATRIC:32123791 EchoBASE:EB1572 EcoGene:EG11615 KO:K07771
OMA:GKATIRT ProtClustDB:PRK10643 BioCyc:EcoCyc:BASR-MONOMER
BioCyc:ECOL316407:JW4074-MONOMER Genevestigator:P30843
Uniprot:P30843
Length = 222
Score = 136 (52.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 40/122 (32%), Positives = 66/122 (54%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLREN--RNNFDLVISDVHMPD 81
M++L V+DD T L L+ + A Q E + TA +M ++ ++ LV+ D+ +PD
Sbjct: 1 MKILIVEDD-TLL--LQGLILAAQTEGYACDSVTTA-RMAEQSLEAGHYSLVVLDLGLPD 56
Query: 82 MDGFKLLEHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140
DG L + + LPV++L+A + G+ GA DYL+KP +EEL + ++
Sbjct: 57 EDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKPFALEELHARIRALL 116
Query: 141 RR 142
RR
Sbjct: 117 RR 118
>TIGR_CMR|CPS_1865 [details] [associations]
symbol:CPS_1865 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 RefSeq:YP_268595.1 ProteinModelPortal:Q484C0
STRING:Q484C0 GeneID:3522541 KEGG:cps:CPS_1865 PATRIC:21466873
OMA:DINTHQV BioCyc:CPSY167879:GI48-1935-MONOMER Uniprot:Q484C0
Length = 223
Score = 136 (52.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 32/120 (26%), Positives = 62/120 (51%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
M++L V+D + +V+ ++ +++ L + + + FD +I D+ +P +D
Sbjct: 1 MKILLVEDCQSVAEVIFDYFEESDFDLDYAATGNLGLSLAQSQK--FDCIILDIMLPGLD 58
Query: 84 GFKLLEHVGLE-MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
G L + + E + P+IML+A ++ G+ GA DY++KP +E L+ V RR
Sbjct: 59 GISLCQQLRAEGNNTPIIMLTARDTNDDMLLGLRQGADDYIVKPFNLELLEARIHSVTRR 118
>TIGR_CMR|BA_3229 [details] [associations]
symbol:BA_3229 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
KO:K02483 RefSeq:NP_845535.1 RefSeq:YP_019868.1 RefSeq:YP_029256.1
ProteinModelPortal:Q81NG7 DNASU:1083819
EnsemblBacteria:EBBACT00000008287 EnsemblBacteria:EBBACT00000017508
EnsemblBacteria:EBBACT00000020077 GeneID:1083819 GeneID:2815940
GeneID:2850665 KEGG:ban:BA_3229 KEGG:bar:GBAA_3229 KEGG:bat:BAS2999
OMA:ADNHTTP ProtClustDB:CLSK916969
BioCyc:BANT260799:GJAJ-3061-MONOMER
BioCyc:BANT261594:GJ7F-3168-MONOMER Uniprot:Q81NG7
Length = 224
Score = 136 (52.9 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 39/125 (31%), Positives = 63/125 (50%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
MRVL V+D+ +L L A Y V AL + N +DL++ D+ +P ++
Sbjct: 1 MRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYI--NMATYDLIVLDIMIPGIN 58
Query: 84 GFKLLEHVGLEMDLPVIMLSAYGDT-KLVMKGITHGACDYLLKPVRIEEL-KNIWQHVIR 141
G ++L+ + + ++L DT +KG+ GA DYL+KP +EL I V+
Sbjct: 59 GLQVLQKLRADNHTTSVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARI--RVLM 116
Query: 142 RKKVG 146
R+K G
Sbjct: 117 RRKTG 121
>TIGR_CMR|BA_3661 [details] [associations]
symbol:BA_3661 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_845926.1 RefSeq:YP_020295.1 RefSeq:YP_029652.1
ProteinModelPortal:Q81Y94 DNASU:1085996
EnsemblBacteria:EBBACT00000012587 EnsemblBacteria:EBBACT00000017515
EnsemblBacteria:EBBACT00000021805 GeneID:1085996 GeneID:2816214
GeneID:2848549 KEGG:ban:BA_3661 KEGG:bar:GBAA_3661 KEGG:bat:BAS3396
OMA:ENTMSLA ProtClustDB:CLSK917123
BioCyc:BANT260799:GJAJ-3457-MONOMER
BioCyc:BANT261594:GJ7F-3567-MONOMER Uniprot:Q81Y94
Length = 225
Score = 136 (52.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 34/130 (26%), Positives = 68/130 (52%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
VL V+D+ +++ ++ R +EV AL++ E+ DL++ D+ +P++DG+
Sbjct: 5 VLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHE--IDLIMLDIMLPEIDGW 62
Query: 86 KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK- 144
+ + E +P+IML+A D + G GA +Y+ KP + L + +++R
Sbjct: 63 SVCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADG 122
Query: 145 -VGPKDQNKL 153
VG ++N +
Sbjct: 123 VVGVAEENAM 132
>UNIPROTKB|P06628 [details] [associations]
symbol:spo0F "Sporulation initiation phosphotransferase F"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0005737
GO:GO:0006355 GO:GO:0035556 GO:GO:0046872 GO:GO:0030435
GO:GO:0016301 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:Z49782 EMBL:X03497 EMBL:M11081
EMBL:M22039 PIR:A24737 RefSeq:NP_391594.1 PDB:1F51 PDB:1FSP
PDB:1NAT PDB:1PEY PDB:1PUX PDB:1SRR PDB:2FSP PDB:2FTK PDB:2JVI
PDB:2JVJ PDB:2JVK PDB:3Q15 PDBsum:1F51 PDBsum:1FSP PDBsum:1NAT
PDBsum:1PEY PDBsum:1PUX PDBsum:1SRR PDBsum:2FSP PDBsum:2FTK
PDBsum:2JVI PDBsum:2JVJ PDBsum:2JVK PDBsum:3Q15
ProteinModelPortal:P06628 SMR:P06628 DIP:DIP-58965N IntAct:P06628
EnsemblBacteria:EBBACT00000000330 GeneID:937041 KEGG:bsu:BSU37130
PATRIC:18979462 GenoList:BSU37130 KO:K02490 OMA:IRVIIMT
ProtClustDB:CLSK873695 BioCyc:BSUB:BSU37130-MONOMER
BindingDB:P06628 ChEMBL:CHEMBL3857 EvolutionaryTrace:P06628
Uniprot:P06628
Length = 124
Score = 121 (47.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 29/111 (26%), Positives = 60/111 (54%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L VDD +L Y+ + AL ++ + R DLV+ D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 62
Query: 85 FKLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKN 134
++L+ + ++ ++ VI+++AYG+ ++ + GA + KP I+E+++
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>TIGR_CMR|BA_5068 [details] [associations]
symbol:BA_5068 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:Q9WYN0
RefSeq:NP_847259.1 RefSeq:YP_021717.1 RefSeq:YP_030951.1
ProteinModelPortal:Q81KD2 DNASU:1084352
EnsemblBacteria:EBBACT00000008736 EnsemblBacteria:EBBACT00000013851
EnsemblBacteria:EBBACT00000021438 GeneID:1084352 GeneID:2816207
GeneID:2851510 KEGG:ban:BA_5068 KEGG:bar:GBAA_5068 KEGG:bat:BAS4707
OMA:FMKNQGI ProtClustDB:CLSK917509
BioCyc:BANT260799:GJAJ-4761-MONOMER
BioCyc:BANT261594:GJ7F-4923-MONOMER Uniprot:Q81KD2
Length = 229
Score = 136 (52.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 31/101 (30%), Positives = 54/101 (53%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L V+D+ ++L+++ + QY V AL + E DLVI D+ +P++DG+
Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEE--VDLVILDIMLPELDGW 62
Query: 86 KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
+ + ++P+IML+A D + G GA DY+ KP
Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKP 103
>TIGR_CMR|CPS_0179 [details] [associations]
symbol:CPS_0179 "DNA-binding response regulator, LuxR
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] InterPro:IPR000792 InterPro:IPR001789
Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038 PROSITE:PS00622
PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421 SMART:SM00448
GO:GO:0035556 GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG2197 HOGENOM:HOG000034813
RefSeq:YP_266947.1 ProteinModelPortal:Q48AG6 STRING:Q48AG6
GeneID:3520372 KEGG:cps:CPS_0179 PATRIC:21463775 OMA:KQHASAI
BioCyc:CPSY167879:GI48-282-MONOMER Uniprot:Q48AG6
Length = 219
Score = 135 (52.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 30/110 (27%), Positives = 59/110 (53%)
Query: 25 RVLAVDDDPTCLKVLENFLRA-CQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
+++ DD P + L L+A Y V + Q + L+ N N+ DL++ D+++P
Sbjct: 6 KIIIADDHPLFRQALLGTLKAKLTYTVWLEAQTIEELEQQLTNNNDSDLLLLDLNIPGAH 65
Query: 84 GFKLLEHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
GF L HV +PV+++SA+ D + K +++GA ++ K ++++
Sbjct: 66 GFNTLIHVRNHFPQIPVVIVSAHEDHDTISKAMSYGAAGFVPKSTPVDDI 115
>TIGR_CMR|DET_0170 [details] [associations]
symbol:DET_0170 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_180918.1 ProteinModelPortal:Q3ZA31 STRING:Q3ZA31
GeneID:3230558 KEGG:det:DET0170 PATRIC:21607423 OMA:RIRVNIR
ProtClustDB:CLSK741609 BioCyc:DETH243164:GJNF-170-MONOMER
Uniprot:Q3ZA31
Length = 232
Score = 134 (52.2 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 31/111 (27%), Positives = 63/111 (56%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTV--TNQAVTALKMLRENRNNFDLVISDVHMPD 81
M++L ++DD ++++ + +V + + + L M+ + D +I D+ +PD
Sbjct: 1 MKILIIEDDAQTTEIVKLSFKLGWPDVRLLEASSGESGLAMVETAKP--DAIILDIGLPD 58
Query: 82 MDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
+ G+++L + L +LPVI+L+ + ++K ++ GA DYL+KP R EL
Sbjct: 59 ISGYEVLRQIRLFSELPVIILTIRNEESDIVKALSLGADDYLVKPFRQMEL 109
Score = 40 (19.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 594 GPF--SQSMDQ--SNSPYIAQLTGVEKAPLNTKLRSNDDFLLEQSKSHDGFIQNNYD 646
GPF QS+ + N I +LT +E L +RSN ++ ++ + + +N Y+
Sbjct: 132 GPFHFGQSVTKLYKNDKPI-RLTNIEGQILYYLMRSNGRYIYNETIAQKIWGENAYE 187
>TAIR|locus:505006489 [details] [associations]
symbol:KAN3 "AT4G17695" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 GO:GO:0007275
GO:GO:0005634 GO:GO:0030154 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
EMBL:AL161547 Gene3D:1.10.10.60 SUPFAM:SSF46689 PROSITE:PS51293
HSSP:O49397 InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
EMBL:Z97344 HOGENOM:HOG000241649 EMBL:AY048690 IPI:IPI00544036
RefSeq:NP_567535.1 UniGene:At.26411 ProteinModelPortal:Q941I2
SMR:Q941I2 PaxDb:Q941I2 PRIDE:Q941I2 EnsemblPlants:AT4G17695.1
GeneID:827490 KEGG:ath:AT4G17695 TAIR:At4g17695 eggNOG:NOG253351
InParanoid:Q941I2 OMA:SSNENEW PhylomeDB:Q941I2
ProtClustDB:CLSN2917571 Genevestigator:Q941I2 Uniprot:Q941I2
Length = 322
Score = 140 (54.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 40/116 (34%), Positives = 59/116 (50%)
Query: 211 KKPRVVWTPELHRKFVGAVNQLGV-DKAVPKKILDLMNVEGLTRENVASHLQKFRLYLKR 269
+ PR+ WT LH FV AV LG ++A PK +L+LM+V+ LT +V SHLQ +R +K
Sbjct: 163 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRT-IKS 221
Query: 270 LSNETPQAGMV-AALGSKDSSYLRIGALDGFGDLRSLNSPGRLSSSAISSSYVPGN 324
T +G GS+ +S L G + S + +L + A S + N
Sbjct: 222 TEKPTTSSGQSDCENGSQVNSEREARNLTGLWNNSSSEARFQLKAKASSGVDISSN 277
>TIGR_CMR|CHY_1125 [details] [associations]
symbol:CHY_1125 "response regulator" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR005471 Pfam:PF00072 Pfam:PF09339
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
RefSeq:YP_359971.1 ProteinModelPortal:Q3AD13 STRING:Q3AD13
GeneID:3727659 KEGG:chy:CHY_1125 PATRIC:21275390
HOGENOM:HOG000131195 OMA:RNEYLWI ProtClustDB:CLSK289825
BioCyc:CHYD246194:GJCN-1124-MONOMER Uniprot:Q3AD13
Length = 205
Score = 133 (51.9 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 33/111 (29%), Positives = 58/111 (52%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
MRVL +DDD + + +E + N A+ K +RE D+V+ D HMP +
Sbjct: 1 MRVLIIDDDEGIRYTVGEIIAFMGWEAIKAENGAIGIEKFVREKP---DMVLVDYHMPAL 57
Query: 83 DGFKLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
DG +E + ++ +P+I+L+ ++ K + GA D+ LKP++ +L
Sbjct: 58 DGLDTVERIREIDQGVPIIVLTVDERQQIADKFLEVGASDFALKPIKAPDL 108
>TIGR_CMR|CPS_2387 [details] [associations]
symbol:CPS_2387 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 KO:K02483 RefSeq:YP_269105.1
ProteinModelPortal:Q482B3 STRING:Q482B3 GeneID:3521255
KEGG:cps:CPS_2387 PATRIC:21467857
BioCyc:CPSY167879:GI48-2450-MONOMER Uniprot:Q482B3
Length = 236
Score = 136 (52.9 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 43/125 (34%), Positives = 64/125 (51%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNN--FDLVISDVHMPDMD 83
+L VDD+P + L +L + + VT+ V K +RE N DL++ D+ MP D
Sbjct: 4 ILIVDDNPDIRQPLARYLG--DHGMRVTS--VDGGKAMRETLKNSVIDLILLDIMMPGED 59
Query: 84 GFKLLEHVGLEMDLPVIMLSAYG-DTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
G L V + +PVI+L+A DT V+ G+ GA DY+ KP L + V+RR
Sbjct: 60 GLSLCRFVQSNLKIPVILLTALTEDTDRVV-GLEMGADDYVAKPFNPRVLLAKIKAVLRR 118
Query: 143 KKVGP 147
+ P
Sbjct: 119 SQSFP 123
>UNIPROTKB|Q9KNL8 [details] [associations]
symbol:VC_2714 "Transcriptional regulator OmpR"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0035556 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 KO:K07659 ProtClustDB:PRK09468 OMA:AANSEQM
HSSP:P03025 PIR:C82042 RefSeq:NP_232341.1 ProteinModelPortal:Q9KNL8
SMR:Q9KNL8 DNASU:2615542 GeneID:2615542 KEGG:vch:VC2714
PATRIC:20084446 Uniprot:Q9KNL8
Length = 240
Score = 136 (52.9 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 38/122 (31%), Positives = 62/122 (50%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
+VL VDDD +LE +L ++V ++L R NF L++ D+ +P DG
Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLL--TRENFHLMVLDLMLPGEDG 63
Query: 85 FKLLEHVGLEMDL-PVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143
+ + ++ P++ML+A GD + G+ GA DYL KP EL + V+RR+
Sbjct: 64 LSICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
Query: 144 KV 145
+
Sbjct: 124 VI 125
>TIGR_CMR|VC_2714 [details] [associations]
symbol:VC_2714 "transcriptional regulator OmpR,"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0035556 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 KO:K07659 ProtClustDB:PRK09468 OMA:AANSEQM
HSSP:P03025 PIR:C82042 RefSeq:NP_232341.1 ProteinModelPortal:Q9KNL8
SMR:Q9KNL8 DNASU:2615542 GeneID:2615542 KEGG:vch:VC2714
PATRIC:20084446 Uniprot:Q9KNL8
Length = 240
Score = 136 (52.9 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 38/122 (31%), Positives = 62/122 (50%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
+VL VDDD +LE +L ++V ++L R NF L++ D+ +P DG
Sbjct: 6 KVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLL--TRENFHLMVLDLMLPGEDG 63
Query: 85 FKLLEHVGLEMDL-PVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143
+ + ++ P++ML+A GD + G+ GA DYL KP EL + V+RR+
Sbjct: 64 LSICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
Query: 144 KV 145
+
Sbjct: 124 VI 125
>TIGR_CMR|CPS_4166 [details] [associations]
symbol:CPS_4166 "response regulator" species:167879
"Colwellia psychrerythraea 34H" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003594 Pfam:PF00072 Pfam:PF02518 PROSITE:PS50110
SMART:SM00387 SMART:SM00448 GO:GO:0005524 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
Gene3D:3.30.565.10 SUPFAM:SSF55874 RefSeq:YP_270818.1
ProteinModelPortal:Q47WK4 STRING:Q47WK4 GeneID:3522071
KEGG:cps:CPS_4166 PATRIC:21471193
BioCyc:CPSY167879:GI48-4176-MONOMER Uniprot:Q47WK4
Length = 508
Score = 143 (55.4 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 35/107 (32%), Positives = 62/107 (57%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
+ VL VDD + +++ ++ +Y V A TA+K+ + DL++ D+ MP++D
Sbjct: 155 LNVLVVDDIADNIAIIKELIKD-KYRVKAALNAKTAMKICLSDLPP-DLILLDIMMPEVD 212
Query: 84 GFKL---LEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPV 127
G L L+ L ++ VI L+A +T+ V+KG++ GA DY+ KP+
Sbjct: 213 GLTLCKQLKENPLTQNIVVIFLTALSETEDVVKGLSLGAVDYITKPI 259
>TIGR_CMR|GSU_2041 [details] [associations]
symbol:GSU_2041 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489 KO:K07714
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_953090.1 ProteinModelPortal:Q74BK0 GeneID:2687998
KEGG:gsu:GSU2041 PATRIC:22026943 OMA:HMLQVML ProtClustDB:CLSK828703
BioCyc:GSUL243231:GH27-1944-MONOMER Uniprot:Q74BK0
Length = 455
Score = 142 (55.0 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 40/134 (29%), Positives = 67/134 (50%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
R+L VDD+ +L LR YE AL + + +D ++ D+ MP MDG
Sbjct: 4 RILVVDDEENMRHMLCAMLRKQGYEAVEAADGEAALA--QASAAAYDFILCDIRMPIMDG 61
Query: 85 FKLLEHVGLEMDLP--VIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
L + +LP VIM+SAYG + + GA DY+ KP + +E+ + + R
Sbjct: 62 VGFLRTFQ-KAELPGTVIMMSAYGTVDAAIACMKEGAYDYVSKPFKNDEILLVLRKAEER 120
Query: 143 KKVGPKDQNKLLNQ 156
+++ K++N+ L +
Sbjct: 121 ERL--KNENRRLRE 132
>TIGR_CMR|APH_0551 [details] [associations]
symbol:APH_0551 "response regulator/GGDEF domain protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:CP000235 GenomeReviews:CP000235_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG3706 KO:K02488 HOGENOM:HOG000167204
ProtClustDB:PRK09581 RefSeq:YP_505143.1 ProteinModelPortal:Q2GKF8
STRING:Q2GKF8 GeneID:3930248 KEGG:aph:APH_0551 PATRIC:20949762
OMA:VERENDF BioCyc:APHA212042:GHPM-575-MONOMER Uniprot:Q2GKF8
Length = 456
Score = 142 (55.0 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 34/107 (31%), Positives = 63/107 (58%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L VDD P+ +K+L+ L A Y V A++M E++ DL++ DV MP MDG
Sbjct: 4 KILIVDDLPSNIKLLQAKLTAEYYTVITATSGPEAIRMAEEHQP--DLILLDVMMPGMDG 61
Query: 85 FKLLEHVGLEMDL---PVIMLSAYGDTKLV-MKGITHGACDYLLKPV 127
++ +++ + P++M++A +T + G++ GA D+L+KP+
Sbjct: 62 YETCKNMRTNPAIAYIPIVMVTALDNTTSNRVNGLSAGADDFLIKPI 108
>UNIPROTKB|Q9KT55 [details] [associations]
symbol:VC_1050 "Response regulator" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 OMA:MICDLAM
HSSP:Q56312 PIR:A82249 RefSeq:NP_230695.1 ProteinModelPortal:Q9KT55
DNASU:2614320 GeneID:2614320 KEGG:vch:VC1050 PATRIC:20081198
ProtClustDB:CLSK874195 Uniprot:Q9KT55
Length = 368
Score = 140 (54.3 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 31/103 (30%), Positives = 57/103 (55%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L VDDDP ++ + +L+ Y+V + L+ LR++ DL++ D+ MP ++G
Sbjct: 27 ILLVDDDPVFRRMTKGYLQKYGYQVIEAENGLDGLRKLRDHEP--DLILCDLSMPVLNGI 84
Query: 86 KLLEHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLKPV 127
+ +E V LP++++SA + V K + G D+L KP+
Sbjct: 85 EFVEEVSSSYPSLPLVVVSATEEMADVAKALRFGIKDFLPKPI 127
>TIGR_CMR|VC_1050 [details] [associations]
symbol:VC_1050 "response regulator" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 OMA:MICDLAM HSSP:Q56312
PIR:A82249 RefSeq:NP_230695.1 ProteinModelPortal:Q9KT55
DNASU:2614320 GeneID:2614320 KEGG:vch:VC1050 PATRIC:20081198
ProtClustDB:CLSK874195 Uniprot:Q9KT55
Length = 368
Score = 140 (54.3 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 31/103 (30%), Positives = 57/103 (55%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L VDDDP ++ + +L+ Y+V + L+ LR++ DL++ D+ MP ++G
Sbjct: 27 ILLVDDDPVFRRMTKGYLQKYGYQVIEAENGLDGLRKLRDHEP--DLILCDLSMPVLNGI 84
Query: 86 KLLEHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLKPV 127
+ +E V LP++++SA + V K + G D+L KP+
Sbjct: 85 EFVEEVSSSYPSLPLVVVSATEEMADVAKALRFGIKDFLPKPI 127
>UNIPROTKB|Q9KS16 [details] [associations]
symbol:VC_1445 "Sensor histidine kinase/response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0023014 "signal transduction by phosphorylation"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P39928 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198 RefSeq:NP_231088.1
ProteinModelPortal:Q9KS16 DNASU:2614077 GeneID:2614077
KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS ProtClustDB:CLSK874379
Uniprot:Q9KS16
Length = 572
Score = 143 (55.4 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 36/113 (31%), Positives = 62/113 (54%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L V+D T V++ L Y+VT+ + A+++L +N + FDLV+ D+ MP MDG
Sbjct: 456 ILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKN-HVFDLVLMDISMPIMDGI 514
Query: 86 ---KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNI 135
K+L +E +P+I L+A+ I G D +LKP+R +++ +
Sbjct: 515 AATKILRDKHIE--IPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEV 565
>TIGR_CMR|VC_1445 [details] [associations]
symbol:VC_1445 "sensor histidine kinase/response regulator"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198
RefSeq:NP_231088.1 ProteinModelPortal:Q9KS16 DNASU:2614077
GeneID:2614077 KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS
ProtClustDB:CLSK874379 Uniprot:Q9KS16
Length = 572
Score = 143 (55.4 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 36/113 (31%), Positives = 62/113 (54%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L V+D T V++ L Y+VT+ + A+++L +N + FDLV+ D+ MP MDG
Sbjct: 456 ILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELLEKN-HVFDLVLMDISMPIMDGI 514
Query: 86 ---KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNI 135
K+L +E +P+I L+A+ I G D +LKP+R +++ +
Sbjct: 515 AATKILRDKHIE--IPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDIMEV 565
>TIGR_CMR|BA_3067 [details] [associations]
symbol:BA_3067 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P06628
RefSeq:NP_845397.1 RefSeq:YP_019708.1 RefSeq:YP_029111.1
ProteinModelPortal:Q81NV5 DNASU:1088217
EnsemblBacteria:EBBACT00000009080 EnsemblBacteria:EBBACT00000017281
EnsemblBacteria:EBBACT00000021032 GeneID:1088217 GeneID:2817324
GeneID:2850761 KEGG:ban:BA_3067 KEGG:bar:GBAA_3067 KEGG:bat:BAS2853
OMA:LTKEHFF ProtClustDB:CLSK886597
BioCyc:BANT260799:GJAJ-2916-MONOMER
BioCyc:BANT261594:GJ7F-3019-MONOMER Uniprot:Q81NV5
Length = 223
Score = 134 (52.2 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 34/108 (31%), Positives = 59/108 (54%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L V+DD +L+ L+ +Y V + L ++ E DLV+ DV +P DG+
Sbjct: 6 ILIVEDDLIIGDLLQKILQREKYNVYWEKEGRKVLDIIHE----IDLVVMDVMLPGEDGY 61
Query: 86 KLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
++ + + L +++P+I LSA D +KG+T G +Y++KP EL
Sbjct: 62 QITKKIKNLGLNIPIIFLSARNDMDSKLKGLTIGE-EYMIKPFDPREL 108
>DICTYBASE|DDB_G0282377 [details] [associations]
symbol:dhkM "histidine kinase M" species:44689
"Dictyostelium discoideum" [GO:0048102 "autophagic cell death"
evidence=IMP] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0016772 "transferase activity, transferring
phosphorus-containing groups" evidence=IEA] [GO:0016310
"phosphorylation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0004673 "protein
histidine kinase activity" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016301 "kinase activity" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0007165 "signal transduction"
evidence=IEA] [GO:0004871 "signal transducer activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR004358
Pfam:PF00072 Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110
SMART:SM00387 SMART:SM00448 InterPro:IPR005467
dictyBase:DDB_G0282377 GO:GO:0016021 GO:GO:0005524 GO:GO:0006355
GO:GO:0035556 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P39928 Gene3D:3.30.565.10 SUPFAM:SSF55874 PROSITE:PS50109
eggNOG:COG0642 GO:GO:0004673 GO:GO:0048102 EMBL:AF362374
RefSeq:XP_640034.1 ProteinModelPortal:Q54SK5
EnsemblProtists:DDB0220020 GeneID:8623560 KEGG:ddi:DDB_G0282377
OMA:NTSTINP Uniprot:Q54SK5
Length = 2388
Score = 154 (59.3 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 91/406 (22%), Positives = 159/406 (39%)
Query: 19 KFPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVH 78
K+ G+++L +DD+P KV+ L ++V +A+ E +F+L++ D
Sbjct: 1535 KWGEGLKILVIDDNPNIGKVIAMHLEPFGFKVFQRTTFQSAIYFFNERNGDFNLILLDPL 1594
Query: 79 MPDM--DGFKLLEHVGLEM--DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKN 134
+P + D K ++ + + P++++ T + K + YL KP++ E+L
Sbjct: 1595 IPSLVIDEIKQMKQDSSNIIKNPPLVIMC----TAKLRKSLNVDNVHYLYKPIKREQLTV 1650
Query: 135 IWQHVIRRKKVGPKDQNKLLNQENSRVGAGEGGQGAMSTGNSDQNGKSNRKRKXXXXXXX 194
+ Q + + P N+ LN S G G GG G G +G SN
Sbjct: 1651 LSQLLPNTSTINPIYSNQNLNNSGSSNGGGGGGGGGGGGGGGGGSGSSNIDFNKTKLGGS 1710
Query: 195 XXXXXXXXXXXXSTTQKKPRVVWTPE-LHRKFVGAVNQL-GVDKAVPKKILDLMNVEGLT 252
++ P V TP + + + L ++ A I L N G+T
Sbjct: 1711 NISTGIGNSGLINSNNI-PTPVNTPSNIIPNLLSCQSLLTSLNNA---NIPQLTNDIGIT 1766
Query: 253 RENVASHLQKFRLYLKRLSNETPQAGMVAALGSKDSSYLRIGALDGFGDLRSLNSPGRLS 312
N+ ++ F LSN G+ G ++S G++D ++ S N
Sbjct: 1767 NNNINNNSLMFTTPNSTLSNN----GIT---GLDNNSNNDTGSIDNNSNI-STNIDNNND 1818
Query: 313 SSAISSSYVPGNMFGRFNSTSGLSMHGIASSGMIQPGHSQSFN---TSFNTIGKIQQAMF 369
++ P N +N+ G+ + P S+N T+ N K + ++
Sbjct: 1819 YFIRNNGIPPQNDMNTYNNYVLNHQQGVLPKSLSVPSTPLSYNMLPTNLNINAK-RSSLQ 1877
Query: 370 PANRISNLFQGVRTSSELNQLPQSKSTTQIGDFNHINS--PTTSMA 413
P N S L + T L+ PQS +G N INS P T +
Sbjct: 1878 PLNENSVLPTNL-TPPILSASPQS--LLPMG--NDINSILPNTQQS 1918
Score = 49 (22.3 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 33/145 (22%), Positives = 58/145 (40%)
Query: 540 DSRGDLSCQPGLIGNVIQNYTSKQQWLEHK-QGYNQNL--NNPFSNVNTLL-SGNCTMGP 595
D + + QP L +I+N + +G NL NN ++N L N
Sbjct: 1921 DLQSQIELQPLLQSTIIRNDRGGDILPDSTLEGQITNLSGNNSTISINPPLPETNNNTTT 1980
Query: 596 FSQSMDQSNSPYIAQLTGVEKAPLNTKLRSNDDFLLEQSKSHDGFIQNNYDPMDDMMSGI 655
+ + SP + G +K+ +T + + + S+ G ++NN +D+
Sbjct: 1981 TTTTTQPKKSPILTSSNGSDKSEGSTGSNRSKSRISFLNSSNSGLLKNNLG--EDIYC-- 2036
Query: 656 LKRDSNETI-LMDGELGFDAYSLSS 679
K D +E I + E D+ S SS
Sbjct: 2037 -KGDQSEGIPIPKSERTSDSSSSSS 2060
Score = 40 (19.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 15/66 (22%), Positives = 30/66 (45%)
Query: 394 KSTTQIGDFNHINSPTTSMAATGFTDATVAVGXXXXXXXXXXXNIMMLQGNLHQAHSRDA 453
KS+T I D+ ++ S ++TG + ++VA NI L N + ++ +
Sbjct: 2181 KSSTSIPDYVQVSPRRFSGSSTG-SGSSVASPQLLSTSNQLNNNINNLNLNSNNNNNNNN 2239
Query: 454 YGNQSS 459
N ++
Sbjct: 2240 NNNNNN 2245
>TAIR|locus:2163852 [details] [associations]
symbol:ATS "AT5G42630" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IMP;TAS]
[GO:0048481 "ovule development" evidence=IMP] [GO:0080060
"integument development" evidence=IGI;IMP] [GO:0005618 "cell wall"
evidence=IDA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IDA] InterPro:IPR001005 InterPro:IPR009057
Pfam:PF00249 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0005618 GO:GO:0030154 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0044212
PROSITE:PS51293 HSSP:O49397 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 GO:GO:0080060 HOGENOM:HOG000241649 EMBL:AB013391
EMBL:AY048691 EMBL:BT026053 IPI:IPI00541325 IPI:IPI00892123
RefSeq:NP_001119363.1 RefSeq:NP_199077.1 UniGene:At.26412
ProteinModelPortal:Q9FJV5 SMR:Q9FJV5 STRING:Q9FJV5
EnsemblPlants:AT5G42630.1 GeneID:834270 KEGG:ath:AT5G42630
TAIR:At5g42630 eggNOG:NOG280455 InParanoid:Q9FJV5 OMA:PQIYGRD
PhylomeDB:Q9FJV5 ProtClustDB:CLSN2916355 Genevestigator:Q9FJV5
Uniprot:Q9FJV5
Length = 276
Score = 137 (53.3 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 32/71 (45%), Positives = 43/71 (60%)
Query: 211 KKPRVVWTPELHRKFVGAVNQLGV-DKAVPKKILDLMNVEGLTRENVASHLQKFRLYLKR 269
+ PR+ WT LH FV AV LG ++A PK +L+LMNV+ LT +V SHLQ +R +K
Sbjct: 104 RAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT-VKC 162
Query: 270 LSNETPQAGMV 280
+P G V
Sbjct: 163 TDKGSPGEGKV 173
>TIGR_CMR|CPS_0397 [details] [associations]
symbol:CPS_0397 "nitrogen regulation protein NR(I)"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006808 "regulation of
nitrogen utilization" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 InterPro:IPR010114 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0009399 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
KO:K07712 GO:GO:0050906 TIGRFAMs:TIGR01818 RefSeq:YP_267155.1
ProteinModelPortal:Q489V9 SMR:Q489V9 STRING:Q489V9 GeneID:3520592
KEGG:cps:CPS_0397 PATRIC:21464159 OMA:KELAVEP
BioCyc:CPSY167879:GI48-492-MONOMER Uniprot:Q489V9
Length = 466
Score = 141 (54.7 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 40/145 (27%), Positives = 71/145 (48%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
+V VDDD + VLE A L L + +++ISD+ MP++DG
Sbjct: 5 QVWIVDDDSSIRWVLEKAFANANISCAAFESAENLLIALEHGQP--EIIISDIRMPNIDG 62
Query: 85 FKLLEHVGLEMD-LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143
+LL+ + + +PVI+++A+ D + GA +YL KP I+E N+ + +
Sbjct: 63 MELLKRLNKQHSHIPVIIMTAHSDLDSAVNAYQGGAFEYLPKPFDIDEAINLSKRALTHA 122
Query: 144 KVGPKDQNKLLNQENSRVGAGEGGQ 168
+ ++NK NQ++ + G G+
Sbjct: 123 RE-QNEKNK--NQKDIPLAVGLIGE 144
>TAIR|locus:2051572 [details] [associations]
symbol:AT2G06020 "AT2G06020" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR001005 InterPro:IPR009057 Pfam:PF00249 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 HSSP:O49397 InterPro:IPR006447
TIGRFAMs:TIGR01557 EMBL:AC006413 IPI:IPI00525998 PIR:C84474
RefSeq:NP_178659.1 UniGene:At.52657 ProteinModelPortal:Q9ZPZ8
SMR:Q9ZPZ8 EnsemblPlants:AT2G06020.1 GeneID:815156
KEGG:ath:AT2G06020 TAIR:At2g06020 eggNOG:NOG275517
HOGENOM:HOG000154034 OMA:SKITPCI PhylomeDB:Q9ZPZ8
ProtClustDB:CLSN2912993 ArrayExpress:Q9ZPZ8 Genevestigator:Q9ZPZ8
Uniprot:Q9ZPZ8
Length = 301
Score = 141 (54.7 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 29/59 (49%), Positives = 40/59 (67%)
Query: 208 TTQKKPRVVWTPELHRKFVGAVNQLG-VDKAVPKKILDLMNVEGLTRENVASHLQKFRL 265
T+ +K R+ W+ +LH FV AV +LG +KA PK + + M VEG+ +V SHLQKFRL
Sbjct: 82 TSDEKARLRWSSDLHDCFVNAVEKLGGPNKATPKSVKEAMEVEGIALHHVKSHLQKFRL 140
Score = 37 (18.1 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 559 YTSKQQWLEHKQGYNQNLNNPFSNVNTLLSG---NCTMGPFSQSMDQ 602
Y + Q + HK LNN N ++ + + T+ P S+ Q
Sbjct: 152 YVRQSQSMPHKSQQQLQLNNDCVNHDSYCNATFLSVTVPPTIDSLHQ 198
WARNING: HSPs involving 181 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.130 0.375 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 681 638 0.00093 120 3 11 23 0.44 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 431
No. of states in DFA: 617 (66 KB)
Total size of DFA: 332 KB (2168 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 55.50u 0.10s 55.60t Elapsed: 00:00:02
Total cpu time: 55.53u 0.10s 55.63t Elapsed: 00:00:02
Start: Thu May 9 23:21:18 2013 End: Thu May 9 23:21:20 2013
WARNINGS ISSUED: 2