BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005719
(681 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family
Of Plant Myb-Related Dna Binding Motifs Of The
Arabidopsis Response Regulators
Length = 64
Score = 105 bits (262), Expect = 7e-23, Method: Composition-based stats.
Identities = 48/64 (75%), Positives = 57/64 (89%)
Query: 208 TTQKKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFRLYL 267
T QKKPRV+WT ELH KF+ AV+ LGV++AVPKKILDLMNV+ LTRENVASHLQKFR+ L
Sbjct: 1 TAQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60
Query: 268 KRLS 271
K++S
Sbjct: 61 KKVS 64
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 73/134 (54%), Gaps = 3/134 (2%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L +DD+ T L+ ++ L EV + + L++ EN N+ D+VI+D+ MP + G
Sbjct: 5 KILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSG 64
Query: 85 FKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143
+L + + + VI+L+ +GD + + GA +YL KPV ++L + I RK
Sbjct: 65 MDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRK 124
Query: 144 KVGPKDQNKLLNQE 157
K+ +N+ + QE
Sbjct: 125 KL--LMENERMTQE 136
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 37/107 (34%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
R+L VDDD + ++L LR ++ V AL +RE R DLV+ D+ +P M+G
Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRP--DLVLLDLMLPGMNG 64
Query: 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEE 131
+ + + +P++ML+A DT V+ G+ GA DY++KP + +E
Sbjct: 65 IDVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKE 111
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 43/123 (34%), Positives = 63/123 (51%), Gaps = 5/123 (4%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L VDDD T + LE LR YEV AL+ + +N D +I DV +P +DG+
Sbjct: 7 LLIVDDDDTVAEXLELVLRGAGYEVRRAASGEEALQQIYKNLP--DALICDVLLPGIDGY 64
Query: 86 KLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
L + V L LP++ L+A GD + G GA DYL KP +EL ++++ R
Sbjct: 65 TLCKRVRQHPLTKTLPILXLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILAR 124
Query: 143 KKV 145
+
Sbjct: 125 TTI 127
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 3/126 (2%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
RVL VDD+ +++L L+ +EV AL RE R D VI DV P DG
Sbjct: 25 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRP--DAVILDVXXPGXDG 82
Query: 85 FKLLEHVGLE-MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143
F +L + + +D P + L+A + + G+T G DY+ KP +EE+ + ++RR
Sbjct: 83 FGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 142
Query: 144 KVGPKD 149
G K+
Sbjct: 143 GKGNKE 148
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 65/111 (58%), Gaps = 3/111 (2%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
M +L VDD P ++L + L + Y+ N V AL +L ++N+ D+V+SDV+MP+MD
Sbjct: 130 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL--SKNHIDIVLSDVNMPNMD 187
Query: 84 GFKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELK 133
G++L + + L + LPVI ++A + + + G L KPV ++ +K
Sbjct: 188 GYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIK 238
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 67/123 (54%), Gaps = 6/123 (4%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTV-TNQAVTALKMLRENRNNFDLVISDVHMPDM 82
M++L VDD T ++++N LR + T + +TAL ML+ + +FD V++D +MP M
Sbjct: 13 MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK--KGDFDFVVTDWNMPGM 70
Query: 83 DGFKLLEHVGLEMD---LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139
G LL+++ + + LPV+M++A + +++ G Y++KP LK +
Sbjct: 71 QGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKI 130
Query: 140 IRR 142
R
Sbjct: 131 FER 133
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
V +DDD K ++ L + V+ A AL L + +VISD+ MP MDG
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAG--IVISDIRMPGMDGL 63
Query: 86 KLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
L + L+ DLP+I+++ +GD + ++ I GA D++ KP + L
Sbjct: 64 ALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRL 111
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 3/108 (2%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
V +DDD K ++ L + V+ A AL L + +VISD+ MP MDG
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAG--IVISDIRMPGMDGL 63
Query: 86 KLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
L + L+ DLP+I+++ +GD + ++ I GA D++ KP + L
Sbjct: 64 ALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRL 111
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L VDD+ +LE LR YEV + A++M+ E + DL++ D+ +P+ DG
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQP--DLILLDIMLPNKDG 61
Query: 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143
++ V + D+P+IML+A + G+ GA DY+ KP EL + +RR+
Sbjct: 62 VEVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQ 120
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L VDD+ +LE LR YEV + A++M+ E + DL++ D+ +P+ DG
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQP--DLILLDIMLPNKDG 61
Query: 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143
++ V + D+P+IML+A + G+ GA DY+ KP EL + +RR+
Sbjct: 62 VEVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQ 120
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 71/125 (56%), Gaps = 6/125 (4%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
M +L VDD P ++L + L + Y+ N V AL +L ++N+ D+V+SDV+MP+MD
Sbjct: 9 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL--SKNHIDIVLSDVNMPNMD 66
Query: 84 GFKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELK---NIWQHV 139
G++L + + L + LPVI ++A + + + G L KPV ++ +K ++
Sbjct: 67 GYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAER 126
Query: 140 IRRKK 144
+R+ +
Sbjct: 127 VRKSR 131
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 41/124 (33%), Positives = 68/124 (54%), Gaps = 5/124 (4%)
Query: 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKM-LRENRNNFDLVISDVHMP 80
+ +RVL V+D+ ++ L+ + V V + M L E FD+VI D+ +P
Sbjct: 1 MNVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEP---FDVVILDIMLP 57
Query: 81 DMDGFKLLEHVGLE-MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139
DG+++L+ + ++ PV+ML+A D + +KG+ GA DYL KP + EL + +
Sbjct: 58 VHDGWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRAL 117
Query: 140 IRRK 143
IRRK
Sbjct: 118 IRRK 121
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L V+D PT + L++ L Y+ A++ L R DL+ISDV MP+MDG+
Sbjct: 10 ILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRP--DLIISDVLMPEMDGY 67
Query: 86 KLLEHVGLEMDL---PVIMLSAYGDTKLVMKGITHGACDYLLKPVR 128
L + + DL PVI+L+ D + V++ + GA D++ KP +
Sbjct: 68 ALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCK 113
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
R+L VDD +++LE L A YEV+ TAL M R+ D+++ DV MP MDG
Sbjct: 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAM--AARDLPDIILLDVMMPGMDG 60
Query: 85 FKL---LEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPV 127
F + L+ +PV++++A ++G+ GA D+L KP+
Sbjct: 61 FTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 106
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 74/135 (54%), Gaps = 5/135 (3%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
M VL ++DD +LE +L +V + A K+L E +F++V+ + +PD++
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEK--HFNVVLLXLLLPDVN 58
Query: 84 GFKLLEHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
G ++L+ + + VI+++ +G K ++ + GA D+L KP +EE++ I
Sbjct: 59 GLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEH 118
Query: 143 KKVGPKDQNKLLNQE 157
+K+ + +N+LL +E
Sbjct: 119 RKL--RKENELLRRE 131
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 58/106 (54%), Gaps = 5/106 (4%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
R+L VDD +++LE L A YEV+ TAL M R+ D+++ DV MP MDG
Sbjct: 4 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAM--AARDLPDIILLDVMMPGMDG 61
Query: 85 FKL---LEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPV 127
F + L+ +PV++++A ++G+ GA D+L KP+
Sbjct: 62 FTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 107
>pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 65/117 (55%), Gaps = 7/117 (5%)
Query: 29 VDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLL 88
VDD+ K L L + V + A L + RN ++++D+ MPDM G +LL
Sbjct: 9 VDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNG--VLVTDLRMPDMSGVELL 66
Query: 89 EHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP----VRIEELKNIWQHVI 140
++G L++++P I+++ +GD + ++ + GA D++ KP V IE ++ +H++
Sbjct: 67 RNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHLV 123
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
Structure At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 69/127 (54%), Gaps = 15/127 (11%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
+VL V+D+ +K+ + L A YE T + ++AL + REN+ DL++ D+ +P++ G
Sbjct: 3 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKP--DLILMDIQLPEISG 60
Query: 85 FKLLEHVGLEMDL---PVIMLSAYGDTKLVMKG----ITHGACD-YLLKPVRIEELKNIW 136
++ + + + DL PV+ ++A+ MKG I G C+ Y+ KP+ +
Sbjct: 61 LEVTKWLKEDDDLAHIPVVAVTAFA-----MKGDEERIREGGCEAYISKPISVVHFLETI 115
Query: 137 QHVIRRK 143
+ ++ R+
Sbjct: 116 KRLLERQ 122
>pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Response Regulator
Spo0a
Length = 130
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 12/126 (9%)
Query: 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTA---LKMLRENRNNFDLVISDVH 78
+ ++V DD+ + +L+ ++ + Q ++ V A L+ML E R D+++ D+
Sbjct: 1 MSIKVCIADDNRELVSLLDEYISS-QPDMEVIGTAYNGQDCLQMLEEKRP--DILLLDII 57
Query: 79 MPDMDGFKLLEHV--GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIW 136
MP +DG +LE + G E VIML+A+G + K + GA ++LKP +E L
Sbjct: 58 MPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLA--- 114
Query: 137 QHVIRR 142
H IR+
Sbjct: 115 -HHIRQ 119
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VISD MP+M
Sbjct: 5 LKFLVVDDQSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWKMPNM 62
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++AY + ++ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKP 109
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 39 LENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHV-GLEMDL 97
LE LR +EV AL+ ENR D ++ D++MP +DG ++ + ++ D+
Sbjct: 23 LERGLRLSGFEVATAVDGAEALRSATENRP--DAIVLDINMPVLDGVSVVTALRAMDNDV 80
Query: 98 PVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143
PV +LSA + G+ GA DYL+KP + EL + ++RR+
Sbjct: 81 PVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 126
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/107 (34%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
V VDDD + VLE L T L L D+++SD+ MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP--DVLLSDIRMPGMDGL 63
Query: 86 KLLEHVGLEMD-LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEE 131
LL+ + LPVI+++A+ D + GA DYL KP I+E
Sbjct: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of
Beryllofluoride- Activated Ntrc Receiver Domain
Length = 124
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/107 (34%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
V VDDD + VLE L T L L D+++SD+ MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP--DVLLSDIRMPGMDGL 63
Query: 86 KLLEHVGLEMD-LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEE 131
LL+ + LPVI+++A+ D + GA DYL KP I+E
Sbjct: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of
Ntrc
Length = 124
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/107 (34%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
V VDDD + VLE L T L L D+++SD+ MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP--DVLLSDIRMPGMDGL 63
Query: 86 KLLEHVGLEMD-LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEE 131
LL+ + LPVI+++A+ D + GA DYL KP I+E
Sbjct: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
V VDDD + + L N LR+ +EV + A T L+ R ++ ++ D+ MP M G
Sbjct: 7 VFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHG--CLVLDMRMPGMSGI 64
Query: 86 KLLEHVGLEMD-LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
+L E + D +P++ ++A+GD + ++ + GA ++L KP + L
Sbjct: 65 ELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQAL 112
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Query: 21 PIG-MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVH 78
P+G M++L VDD T ++++N L YE V V A + L N + ++I+D +
Sbjct: 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADT-KVLITDWN 60
Query: 79 MPDMDGFKLLEHVGLE---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELK 133
MP+M+G L++ V + ++P+IM++A G V+ + G +Y++KP + LK
Sbjct: 61 MPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLK 118
>pdb|1P6U|A Chain A, Nmr Structure Of The Bef3-Activated Structure Of The
Response Regulator Chey2-Mg2+ From Sinorhizobium
Meliloti
pdb|1P6Q|A Chain A, Nmr Structure Of The Response Regulator Chey2 From
Sinorhizobium Meliloti, Complexed With Mg++
Length = 129
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 40/114 (35%), Positives = 61/114 (53%), Gaps = 6/114 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQY-EVTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++VL VDD T +L + L+ + ++T +K++ +N ++ LVISD +MP M
Sbjct: 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHH--LVISDFNMPKM 64
Query: 83 DGFKLLEHVGLE---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELK 133
DG LL+ V I+L+A GD LV K GA + L KP IE++K
Sbjct: 65 DGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMK 118
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD+ T +++ N L+ + V V AL L+ + VISD MP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWRMPNM 62
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A+ + ++ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAHAKKENIIAAAQAGASGYVVKP 109
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 55.8 bits (133), Expect = 9e-08, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VISD MP+M
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWDMPNM 66
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++AY + ++ GA Y++KP
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKP 113
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD+ T +++ N L+ + V V AL L+ + VISD +MP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A + ++ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKP 109
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 65/118 (55%), Gaps = 6/118 (5%)
Query: 21 PIG-MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVH 78
P+G M++L VDD T ++++N L YE V V A + L N + ++I+D +
Sbjct: 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADT-KVLITDWN 60
Query: 79 MPDMDGFKLLEHVGLE---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELK 133
MP+M+G L++ V + ++P+IM++ G V+ + G +Y++KP + LK
Sbjct: 61 MPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLK 118
>pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 64/117 (54%), Gaps = 7/117 (5%)
Query: 29 VDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLL 88
VDD+ K L L + V + A L + RN ++++ + MPDM G +LL
Sbjct: 9 VDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNG--VLVTXLRMPDMSGVELL 66
Query: 89 EHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP----VRIEELKNIWQHVI 140
++G L++++P I+++ +GD + ++ + GA D++ KP V IE ++ +H++
Sbjct: 67 RNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHLV 123
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD+ T +++ N L+ + V V AL L+ + VISD MP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWMMPNM 62
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A + ++ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTALAKKENIIAAAQAGASGYVVKP 109
>pdb|1QMP|A Chain A, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|B Chain B, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|C Chain C, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|D Chain D, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
Length = 130
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/126 (30%), Positives = 66/126 (52%), Gaps = 12/126 (9%)
Query: 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTA---LKMLRENRNNFDLVISDVH 78
+ ++V DD+ + +L+ ++ + Q ++ V A L+ML E R D+++ +
Sbjct: 1 MSIKVCIADDNRELVSLLDEYISS-QPDMEVIGTAYNGQDCLQMLEEKRP--DILLLXII 57
Query: 79 MPDMDGFKLLEHV--GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIW 136
MP +DG +LE + G E VIML+A+G + K + GA ++LKP +E L
Sbjct: 58 MPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLA--- 114
Query: 137 QHVIRR 142
H IR+
Sbjct: 115 -HHIRQ 119
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L +DDD + L +L ++V + L++ + DLVI D+ P +DG
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQP--DLVICDLRXPQIDGL 65
Query: 86 KLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
+L+ + + P+I+LS G ++ + GA DYL+KP +E+L + +H +RR
Sbjct: 66 ELIRRIRQTASETPIIVLSGAGVXSDAVEALRLGAADYLIKP--LEDLA-VLEHSVRR 120
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD+ T +++ N L+ + V V AL L+ + VISD MP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWMMPNM 62
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A + ++ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKP 109
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/107 (33%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
V VDDD + VLE L T L L D+++S + MP MDG
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP--DVLLSXIRMPGMDGL 63
Query: 86 KLLEHVGLEMD-LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEE 131
LL+ + LPVI+++A+ D + GA DYL KP I+E
Sbjct: 64 ALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 6/118 (5%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L +DDD + L +L ++V + L++ + DLVI D+ P +DG
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQP--DLVICDLRXPQIDGL 65
Query: 86 KLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
+L+ + + P+I+LS G ++ + GA DYL+KP +E+L + +H +RR
Sbjct: 66 ELIRRIRQTASETPIIVLSGAGVMSDAVEALRLGAADYLIKP--LEDLA-VLEHSVRR 120
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus
Radiodurans
Length = 249
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 2/108 (1%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
R+L ++DD VL L Y V + A L RE+ + DL++ D+ +PD DG
Sbjct: 39 RILVIEDDHDIANVLRXDLTDAGYVVDHADSAXNGLIKARED--HPDLILLDLGLPDFDG 96
Query: 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
+++ + LP+I+L+A + ++ + GA DYL+KP +EL
Sbjct: 97 GDVVQRLRKNSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDEL 144
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VISD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A + V+ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVKP 109
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD+ T +++ N L+ + V V AL L+ + VISD +MP+M
Sbjct: 2 LKFLVVDDNSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 59
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M +A + ++ GA Y++KP
Sbjct: 60 DGLELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVKP 106
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD+ T ++ N L+ + V V AL L+ + VISD +MP+M
Sbjct: 2 LKFLVVDDNSTMRRITRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 59
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A + ++ GA Y++KP
Sbjct: 60 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 106
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L VDD+ + + +L+ L Y+V + ALK + DL++ DV +P +DG
Sbjct: 5 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKP--DLIVLDVMLPKLDG 62
Query: 85 FKLLEHVGLE-MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143
++ + + + + P++ML+A + + G+ GA DY+ KP E+ + ++RR
Sbjct: 63 IEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS 122
Query: 144 KV 145
++
Sbjct: 123 EI 124
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTAL-KMLRENRNNFDLVISDVHMPDM 82
+RVL V+D+ ++ L+ + V V L E FD+VI D+ +P
Sbjct: 3 VRVLVVEDERDLADLITEALKKEXFTVDVCYDGEEGXYXALNEP---FDVVILDIXLPVH 59
Query: 83 DGFKLLEHVGLE-MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141
DG+++L+ ++ PV+ L+A D + +KG+ GA DYL KP + EL + +IR
Sbjct: 60 DGWEILKSXRESGVNTPVLXLTALSDVEYRVKGLNXGADDYLPKPFDLRELIARVRALIR 119
Query: 142 RK 143
RK
Sbjct: 120 RK 121
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 10/112 (8%)
Query: 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVT--VTN--QAVTALKMLRENRNNFDLVISDV 77
+G RVL VDD +L++ + YEV TN +AV K L+ D+V D+
Sbjct: 1 MGKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKP-----DIVTMDI 55
Query: 78 HMPDMDGFKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVR 128
MP+M+G ++ + ++ + +I+ SA G +V++ I GA D+++KP +
Sbjct: 56 TMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQ 107
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VISD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A D + + GA Y++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEADAENIKALAQAGASGYVVKP 110
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VISD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A + ++ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VISD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A + ++ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VISD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A + ++ GA Y++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VISD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A + ++ GA Y++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VISD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A + ++ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 7/110 (6%)
Query: 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNF--DLVISDVHM 79
+G ++L V+D+ +L+++ + + V AL++L F DL+I D+ M
Sbjct: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELL----GGFTPDLMICDIAM 61
Query: 80 PDMDGFKLLEHVGLEMD-LPVIMLSAYGDTKLVMKGITHGACDYLLKPVR 128
P M+G KLLEH+ D PV+++SA + + K + G D LLKPV+
Sbjct: 62 PRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVK 111
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VISD MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWRMPNM 63
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A + ++ GA Y++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VISD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A + ++ GA Y++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 35/111 (31%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 23 GMRVLAVDDDPTCLKVLENFLRACQYEVT--VTN--QAVTALKMLRENRNNFDLVISDVH 78
G RVL VDD +L++ + YEV TN +AV K L+ D+V D+
Sbjct: 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKP-----DIVTMDIT 55
Query: 79 MPDMDGFKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVR 128
MP+M+G ++ + ++ + +I+ SA G +V++ I GA D+++KP +
Sbjct: 56 MPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQ 106
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VISD +MP+M
Sbjct: 6 LKFLVVDDGGTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A + ++ GA Y++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VISD MP+M
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWDMPNM 66
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A + ++ GA Y++KP
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKP 113
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VISD +MP+M
Sbjct: 7 LKFLVVDDFSTGRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 64
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A + ++ GA Y++KP
Sbjct: 65 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 111
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VISD MP+M
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWDMPNM 66
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A + ++ GA Y++KP
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTAQAKKENIIAAAQAGASGYVVKP 113
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VISD MP+M
Sbjct: 9 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWDMPNM 66
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A + ++ GA Y++KP
Sbjct: 67 DGLELLKTIRADGAMSALPVLMVTAKAKKENIIAAAQAGASGYVVKP 113
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 52.0 bits (123), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 6/118 (5%)
Query: 21 PIG-MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVH 78
P+G M++L VDD T ++++N L YE V V A + L N + ++I+ +
Sbjct: 2 PLGSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADT-KVLITAWN 60
Query: 79 MPDMDGFKLLEHVGLE---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELK 133
MP+M+G L++ V + ++P+IM++ G V+ + G +Y++KP + LK
Sbjct: 61 MPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLK 118
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ F +ISD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GFGFIISDWNMPNM 62
Query: 83 DGFKLLEHVGLE---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + + LPV+M++A + ++ GA Y++KP
Sbjct: 63 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ F +ISD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GFGFIISDWNMPNM 63
Query: 83 DGFKLLEHVGLE---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + + LPV+M++A + ++ GA Y++KP
Sbjct: 64 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VISD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M+ A + ++ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKP 109
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VISD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M+++ + ++ GA Y++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTSEAKKENIIAAAQAGASGYVVKP 110
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VISD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTVEAKKENIIAAAQAGASGYVVKP 110
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VISD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A + ++ GA +++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVKP 109
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VISD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTTEAKKENIIAAAQAGASGYVVKP 110
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L VDD +L Y+ + AL ++ + R DLV+ D+ +P MDG
Sbjct: 3 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 60
Query: 85 FKLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKN 134
++L+ + ++ ++ VI+++AYG+ ++ + GA + KP I+E+++
Sbjct: 61 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 111
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
VL V+D+ + L LR +E TV AL +R D+V+ D+ +P M G
Sbjct: 7 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEF--DRAGADIVLLDLMLPGMSGT 64
Query: 86 KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
+ + + +PVIM++A + G+ GA DY+ KP EL + V+RR
Sbjct: 65 DVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 121
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VISD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 83 DGFKLLEHVGLEM---DLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + LPV+M++A + ++ GA Y++KP
Sbjct: 63 DGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VISD +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 63
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTMEAKKENIIAAAQAGASGYVVKP 110
>pdb|3CFY|A Chain A, Crystal Structure Of Signal Receiver Domain Of Putative
Luxo Repressor Protein From Vibrio Parahaemolyticus
Length = 137
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 5/123 (4%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
RVL V+D + + + +++ Y++ A++ + R+ L+I D+ +PDM G
Sbjct: 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIE--RSKPQLIILDLKLPDMSG 63
Query: 85 FKLLEHVGLEMDLP--VIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
+L+ + + D+P VI+ +A+G L + I GA D+L KP+ + LK ++R
Sbjct: 64 EDVLDWIN-QNDIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKR 122
Query: 143 KKV 145
K+
Sbjct: 123 AKL 125
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VD T +++ N L+ + V V AL L+ + VISD +MP+M
Sbjct: 5 LKFLVVDKFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A + ++ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L VDD +L Y+ + AL ++ + R DLV+ D+ +P MDG
Sbjct: 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 62
Query: 85 FKLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKN 134
++L+ + ++ ++ VI+++AYG+ ++ + GA + KP I+E+++
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ F +I D +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GFGFIICDWNMPNM 62
Query: 83 DGFKLLEHVGLE---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + + LPV+M++A + ++ GA Y++KP
Sbjct: 63 DGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
R+L V+D+ +++ L ++ +A+ L E DL++ D +P G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP--DLILLDWMLPGGSG 61
Query: 85 FKLLEHVGLE---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141
+ ++H+ E D+PV+ML+A G+ + ++G+ GA DY+ KP +EL + V+R
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121
Query: 142 R 142
R
Sbjct: 122 R 122
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VIS +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISXWNMPNM 62
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A + ++ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 5/121 (4%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
R+L V+D+ +++ L ++ +A+ L E DL++ D +P G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP--DLILLDWMLPGGSG 61
Query: 85 FKLLEHVGLE---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141
+ ++H+ E D+PV+ML+A G+ + ++G+ GA DY+ KP +EL + V+R
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMR 121
Query: 142 R 142
R
Sbjct: 122 R 122
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VIS +MP+M
Sbjct: 6 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISXWNMPNM 63
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A + ++ GA Y++KP
Sbjct: 64 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VD T +++ N L+ + V V AL L+ + VISD +MP+M
Sbjct: 4 LKFLVVDAFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 61
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A + ++ GA Y++KP
Sbjct: 62 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 108
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L VDD +L Y+ + AL ++ + R DLV+ D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 62
Query: 85 FKLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKN 134
++L+ + ++ ++ VI+++AYG+ ++ + GA + KP I+E+++
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VISD +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M+ A + ++ GA +++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKP 109
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L VDD +L Y+ + AL ++ + R DLV+ D+ +P MDG
Sbjct: 7 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 64
Query: 85 FKLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKN 134
++L+ + ++ ++ VI+++AYG+ ++ + GA + KP I+E+++
Sbjct: 65 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 115
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 49.7 bits (117), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VIS +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISAWNMPNM 62
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A + ++ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L V D T +++ N L+ + V V AL L+ + VISD +MP+M
Sbjct: 7 LKFLVVADFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNM 64
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A + ++ GA Y++KP
Sbjct: 65 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 111
>pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|B Chain B, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|C Chain C, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|D Chain D, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
Length = 122
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
++ V+D+P L+++ Y V+VT L+ + +N++ DL++ D+++PD +G
Sbjct: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASG-AGLREIXQNQS-VDLILLDINLPDENGL 62
Query: 86 KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
L + + +I+++ D + G+ GA DY+ KP+ + EL
Sbjct: 63 XLTRALRERSTVGIILVTGRSDRIDRIVGLEXGADDYVTKPLELREL 109
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L VDD+ +++ + YEV AL+ + D++I D+ +P++DG
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQP--DIIILDLMLPEIDG 60
Query: 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144
++ + + +P++MLSA + G+ GA DY+ KP EL+ + ++RR +
Sbjct: 61 LEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQ 120
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 9/118 (7%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
+VL VDD K++ L+ YEV AL+ L E DL++ D+ MP MDG
Sbjct: 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTP--DLIVLDIMMPVMDG 61
Query: 85 FKLLEHVGLEMD---LPVIMLSAYGDTKLVMKGITHGACDYLLKPVR----IEELKNI 135
F +L+ + + + +PVI+L+A G + ++ GA + KP IEE+K++
Sbjct: 62 FTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHL 119
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVT---NQAVTALKMLRENRNNFDLVISDVHMPD 81
RVL +D+ L LR YE+ Q L L + DLVI DV MP
Sbjct: 15 RVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKP----DLVIMDVKMPR 70
Query: 82 MDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
DG + + P+++L+A+ LV + GA YL+KP I +L
Sbjct: 71 RDGIDAASEIASKRIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDL 121
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VIS +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISXWNMPNM 62
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M+ A + ++ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKP 109
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L VDD +L Y+ + AL ++ + R DLV+ D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 62
Query: 85 FKLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKN 134
++L+ + ++ ++ VI+++AYG+ + + GA + KP I+E+++
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMAQESKELGALTHFAKPFDIDEIRD 113
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L VDD +L Y+ + AL ++ + R DLV+ D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 62
Query: 85 FKLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKN 134
++L+ + ++ ++ VI+++AYG+ ++ + GA KP I+E+++
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTAFAKPFDIDEIRD 113
>pdb|3HV2|A Chain A, Crystal Structure Of Signal Receiver Domain Of Hd Domain-
Containing Protein From Pseudomonas Fluorescens Pf-5
pdb|3HV2|B Chain B, Crystal Structure Of Signal Receiver Domain Of Hd Domain-
Containing Protein From Pseudomonas Fluorescens Pf-5
Length = 153
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L VD L+ L+ L Y + A AL++L DLVIS H+P MDG
Sbjct: 17 ILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASRE--VDLVISAAHLPQMDGP 74
Query: 86 KLLEHVGLEM-DLPVIMLSAYGDTKLVMKGITHGAC-DYLLKPVRIEEL 132
LL + + I+L+ D KL+ K I G YL KP +EL
Sbjct: 75 TLLARIHQQYPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQEL 123
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
MR+L DD VL+ L ++V N A L + E ++D VI D+HMP M+
Sbjct: 15 MRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEE--DYDAVIVDLHMPGMN 72
Query: 84 GFKLLEHV------GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPV 127
G +L+ + G+ PV++LSA + + GA +L KPV
Sbjct: 73 GLDMLKQLRVMQASGMRYT-PVVVLSADVTPEAIRACEQAGARAFLAKPV 121
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L VDD +L Y+ + AL ++ + R DLV+ D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLDMKIPGMDG 62
Query: 85 FKLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKN 134
++ + + ++ ++ VI+++AYG+ ++ + GA + KP I+E+++
Sbjct: 63 IEIAKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|1ZIT|A Chain A, Structure Of The Receiver Domain Of Ntrc4 From Aquifex
Aeolicus
pdb|2JRL|A Chain A, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
pdb|2JRL|B Chain B, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
Length = 121
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
RVL VDD+ + L L Y A K ++E F +++ DV MPD DG
Sbjct: 3 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELF--FPVIVLDVWMPDGDG 60
Query: 85 FKLLEHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
++ + D VI+++ +G +K I GA ++L KP +E
Sbjct: 61 VNFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERF 109
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 71 DLVISDVHMPDMDGFKLLEHVGLE---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPV 127
DL++ + +P G + ++H+ E D+PV+ML+A G+ + ++G+ GA DY+ KP
Sbjct: 48 DLILLEWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPF 107
Query: 128 RIEELKNIWQHVIRR 142
+EL + V+RR
Sbjct: 108 SPKELVARIKAVMRR 122
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L VDD +L Y+ + AL ++ + R DLV+ + +P MDG
Sbjct: 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERP--DLVLLXMKIPGMDG 62
Query: 85 FKLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKN 134
++L+ + ++ ++ VI+++AYG+ ++ + GA + KP I+E+++
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VDD T +++ N L+ + V V AL L+ + VIS +MP+M
Sbjct: 5 LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISXWNMPNM 62
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M+ A + ++ GA +++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKP 109
>pdb|2QXY|A Chain A, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
pdb|2QXY|B Chain B, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
Length = 142
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
V VD+ ++N L + V A LR R DLV DV + +
Sbjct: 7 VXVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLR--REKIDLVFVDVFEGE-ESL 63
Query: 86 KLLEHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
L+ + E D V +LSAY D L++ + GA DY+LKP R++ L
Sbjct: 64 NLIRRIREEFPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYL 111
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L VDD+ +++ + YEV AL+ + D++I + +P++DG
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQP--DIIILXLMLPEIDG 60
Query: 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144
++ + + +P++MLSA + G+ GA DY+ KP EL+ + ++RR +
Sbjct: 61 LEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQ 120
>pdb|2QR3|A Chain A, Crystal Structure Of The N-Terminal Signal Receiver Domain
Of Two- Component System Response Regulator From
Bacteroides Fragilis
Length = 140
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPD---- 81
++ VDD+ L ++ L+ +V + V+ +LRE N ++V+ D++
Sbjct: 6 IIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREE--NPEVVLLDMNFTSGINN 63
Query: 82 -MDGFKLLEHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
+G L + + DLPV++ +AY D L ++GI GA D+++KP
Sbjct: 64 GNEGLFWLHEIKRQYRDLPVVLFTAYADIDLAVRGIKEGASDFVVKP 110
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 5/135 (3%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
RVL VDD+ + L L Y A K ++E F +++ DV PD DG
Sbjct: 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKEL--FFPVIVLDVWXPDGDG 59
Query: 85 FKLLEHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR- 142
++ + D VI+++ +G +K I GA ++L KP +E +H
Sbjct: 60 VNFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEY 119
Query: 143 -KKVGPKDQNKLLNQ 156
KK P+++ + + +
Sbjct: 120 SKKAPPQEEIEFVGE 134
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
+VL VDD K++ L+ YEV AL+ L E DL++ + MP MDG
Sbjct: 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTP--DLIVLXIMMPVMDG 61
Query: 85 FKLLEHVGLEMD---LPVIMLSAYGDTKLVMKGITHGACDYLLKPVR----IEELKNI 135
F +L+ + + + +PVI+L+A G + ++ GA + KP IEE+K++
Sbjct: 62 FTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHL 119
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 75/136 (55%), Gaps = 5/136 (3%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
M VL ++DD +LE +L +V + A K+L E +F++V+ D+ +PD++
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEK--HFNVVLLDLLLPDVN 58
Query: 84 GFKLLEHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
G ++L+ + + VI+++ +G K ++ + GA D+L KP +EE++ I
Sbjct: 59 GLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEH 118
Query: 143 KKVGPKDQNKLLNQEN 158
+K+ + +N+LL +E
Sbjct: 119 RKL--RKENELLRREK 132
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Wild Type)
Length = 116
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
R+L VDD+P ++L+ L+ YE+ ALK N+DLVI D+ MP + G
Sbjct: 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFS--GNYDLVILDIEMPGISG 60
Query: 85 FKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELK 133
++ + + D +I+L+AY + + + A +Y++K +ELK
Sbjct: 61 LEVAGEIRKKKKDAKIILLTAYSHYRSDLS--SWAADEYVVKSFNFDELK 108
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
Length = 121
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 71 DLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIE 130
DL+I D+ +PD DG + + + +PVI+LSA + + + GA DYL KP I
Sbjct: 47 DLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIG 106
Query: 131 ELKNIWQHVIRR 142
EL+ + +RR
Sbjct: 107 ELQARLRVALRR 118
>pdb|2RJN|A Chain A, Crystal Structure Of An Uncharacterized Protein Q2bku2
From Neptuniibacter Caesariensis
Length = 154
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 6/143 (4%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
V+ VDD+ L L+ ++ + + AL+ L+ + LVISD+ MP+M G
Sbjct: 10 VMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGT--SVQLVISDMRMPEMGGE 67
Query: 86 KLLEHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACD-YLLKPVRIEELKNIWQHVIRRK 143
LE V D+ +++S Y D + + + G +LLKP E++ + + ++
Sbjct: 68 VFLEQVAKSYPDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLA 127
Query: 144 KVGPKDQNKLLNQENSRVGAGEG 166
+ +++N L +E EG
Sbjct: 128 FL--REENLRLQEETEAKNKQEG 148
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
RVL V+D+ L+ ++ ++V A A L E+ D+ I D+ +PD DG
Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIP--DIAIVDLGLPDEDG 59
Query: 85 FKLLEH-VGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
L+ ++ LP+++L+A + ++ ++ GA DY+ KP IEE+ Q + RR
Sbjct: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVXARXQALXRR 118
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L V + T + N L+ + V V AL L+ + VISD +MP+M
Sbjct: 5 LKFLVVGNGGTGKSTVRNLLKELGFNNVEDAEDGVDALNKLQAG--GYGFVISDWNMPNM 62
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+M++A + ++ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++ VDDD LK + L+ ++ +T L + F +V+ DV +PD G
Sbjct: 4 KIAVVDDDKNILKKVSEKLQ----QLGRVKTFLTGEDFLNDEEA-FHVVVLDVXLPDYSG 58
Query: 85 FKLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143
+++ + + VI+L+ D + V+KG GA DY+ KP E L + + R+
Sbjct: 59 YEICRXIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118
Query: 144 KVGPKD 149
K G D
Sbjct: 119 KKGLYD 124
>pdb|2QZJ|A Chain A, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|B Chain B, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|C Chain C, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|D Chain D, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|E Chain E, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|F Chain F, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
Length = 136
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L +D D + L+ FL + + A+ + N+ +DL+ ++ + D DG
Sbjct: 6 KILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNK--YDLIFLEIILSDGDG 63
Query: 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
+ L + + P++ + + + ++ + G DYL+KP+ +E L + ++RR
Sbjct: 64 WTLCKKIRNVTTCPIVYXTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRR 121
>pdb|1A2O|A Chain A, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
pdb|1A2O|B Chain B, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
Length = 349
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 57/107 (53%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRA-CQYEVTVTN-QAVTALKMLRENRNNFDLVISDVHMPD 81
+RVL+VDD +++ + + E+ T + A +++ + N D++ DV MP
Sbjct: 4 IRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIK--KFNPDVLTLDVEMPR 61
Query: 82 MDGFKLLEHVGLEMDLPVIMLSAY--GDTKLVMKGITHGACDYLLKP 126
MDG LE + +PV+M+S+ +++ ++ + GA D++ KP
Sbjct: 62 MDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAIDFVTKP 108
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 36 LKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEM 95
L+ +EN AC + +A +K L N++++ DV MP +DG LL +
Sbjct: 24 LEGIENIELACDGQ-----EAFDKVKELTSKGENYNMIFMDVQMPKVDG--LLSTKMIRR 76
Query: 96 DL----PVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNI 135
DL P++ L+A+ D + + + G +L KP++ +LK I
Sbjct: 77 DLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTI 120
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 36 LKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEM 95
L+ +EN AC + +A +K L N++++ DV MP +DG LL +
Sbjct: 23 LEGIENIELACDGQ-----EAFDKVKELTSKGENYNMIFMDVQMPKVDG--LLSTKMIRR 75
Query: 96 DL----PVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNI 135
DL P++ L+A+ D + + + G +L KP++ +LK I
Sbjct: 76 DLGYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTI 119
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
R+L V+D+ +++ L ++ +A+ L E DL++ +P G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP--DLILLAWMLPGGSG 61
Query: 85 FKLLEHVGLE---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141
+ ++H+ E D+PV+ML+A G+ + ++G+ GA D + KP +EL + V+R
Sbjct: 62 IQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMR 121
Query: 142 R 142
R
Sbjct: 122 R 122
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
R+L V+D+ +++ L ++ +A+ L E DL++ +P G
Sbjct: 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWP--DLILLAWMLPGGSG 61
Query: 85 FKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141
+ ++H+ + D+PV+ML+A G+ + ++G+ GA D + KP +EL + V+R
Sbjct: 62 IQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMR 121
Query: 142 R 142
R
Sbjct: 122 R 122
>pdb|3CU5|A Chain A, Crystal Structure Of A Two Component Transcriptional
Regulator Arac From Clostridium Phytofermentans Isdg
pdb|3CU5|B Chain B, Crystal Structure Of A Two Component Transcriptional
Regulator Arac From Clostridium Phytofermentans Isdg
Length = 141
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 67/124 (54%), Gaps = 6/124 (4%)
Query: 22 IGMRVLAVDDDP-TCLKVLENF-LRACQY-EVTVTNQAVTALKMLRENRNNFDLVISDVH 78
+ +R+L VDD+ T ++ N +A + ++ + + A+++ ++ N ++++DV
Sbjct: 1 MSLRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPPN--VLLTDVR 58
Query: 79 MPDMDGFKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQ 137
MP MDG +L++++ L D VI +S Y D + + I A Y+ KP+ E+ + +
Sbjct: 59 MPRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALK 118
Query: 138 HVIR 141
I+
Sbjct: 119 QSIQ 122
>pdb|3HZH|A Chain A, Crystal Structure Of The Chex-Chey-Bef3-Mg+2 Complex From
Borrelia Burgdorferi
Length = 157
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTN-QAVTALKMLRENRNNFDLVISDVHMP 80
I VL VDD +K L + + + T A+ + + N D+V + MP
Sbjct: 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMP 94
Query: 81 DMDGFKLLEHVGLEMD--LPVIMLSAYGDTKLVMKGITHGACDYLLKPV 127
MDG L ++ +E D VIM+SA G +LV + GA +++KP+
Sbjct: 95 KMDGITCLSNI-MEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPL 142
>pdb|3A0R|B Chain B, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
pdb|3A10|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Semet, L89m)
Length = 116
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
R+L VDD+P ++L+ L+ YE+ ALK N+DLVI D+ P + G
Sbjct: 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFS--GNYDLVILDIEXPGISG 60
Query: 85 FKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELK 133
++ + + D +I+L+AY + + A +Y++K +ELK
Sbjct: 61 LEVAGEIRKKKKDAKIILLTAYSHYR--SDXSSWAADEYVVKSFNFDELK 108
>pdb|2GWR|A Chain A, Crystal Structure Of The Response Regulator Protein Mtra
From Mycobacterium Tuberculosis
Length = 238
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
R+L VDDD + + L LR ++ V AL +RE R + L+ +P +G
Sbjct: 7 RILVVDDDASLAEXLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDL--XLPGXNG 64
Query: 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEE 131
+ + + +P++ L+A DT V+ G+ GA DY+ KP + +E
Sbjct: 65 IDVCRVLRADSGVPIVXLTAKTDTVDVVLGLESGADDYIXKPFKPKE 111
>pdb|3CRN|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (chey- Like) From Methanospirillum Hungatei Jf-1
pdb|3CRN|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
Protein (chey- Like) From Methanospirillum Hungatei Jf-1
Length = 132
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNN-FDLVISDVHMPDMD 83
R+L VDDD L + L YEV + A TA + L + N F+L + + +PD +
Sbjct: 5 RILIVDDDTAILDSTKQILEFEGYEVEI---AATAGEGLAKIENEFFNLALFXIKLPDXE 61
Query: 84 GFKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
G +LLE L I ++ Y + + + GA Y+ KPV +L
Sbjct: 62 GTELLEKAHKLRPGXKKIXVTGYASLENSVFSLNAGADAYIXKPVNPRDL 111
>pdb|3C3M|A Chain A, Crystal Structure Of The N-Terminal Domain Of Response
Regulator Receiver Protein From Methanoculleus
Marisnigri Jr1
Length = 138
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 5/128 (3%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L VDD P + V L Y L+ L N DLV+ D+ DG+
Sbjct: 6 ILVVDDSPXIVDVFVTXLERGGYRPITAFSGEECLEAL--NATPPDLVLLDIXXEPXDGW 63
Query: 86 KLLEHVGLE---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142
+ LE + + D+PV+ L+A T DY+LKP +L +HV+ R
Sbjct: 64 ETLERIKTDPATRDIPVLXLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123
Query: 143 KKVGPKDQ 150
+ D+
Sbjct: 124 RHSIAADE 131
>pdb|3NNS|A Chain A, Bef3 Activated Drrb Receiver Domain
pdb|3NNS|B Chain B, Bef3 Activated Drrb Receiver Domain
Length = 117
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++ VDDD LK + L+ ++ +T L + F +V+ DV +PD G
Sbjct: 4 KIAVVDDDKNILKKVSEKLQ----QLGRVKTFLTGEDFLNDEEA-FHVVVLDVXLPDYSG 58
Query: 85 FKLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
+++ + + VI+L+ D + V+KG GA DY+ KP E L
Sbjct: 59 YEICRXIKETRPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEIL 107
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 6/107 (5%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82
++ L VD T +++ N L+ + V V AL L+ + VISD + P+
Sbjct: 5 LKFLVVDKFSTXRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNXPNX 62
Query: 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126
DG +LL+ + G LPV+ ++A + ++ GA +++KP
Sbjct: 63 DGLELLKTIRADGAXSALPVLXVTAEAKKENIIAAAQAGASGWVVKP 109
>pdb|3C97|A Chain A, Crystal Structure Of The Response Regulator Receiver
Domain Of A Signal Transduction Histidine Kinase From
Aspergillus Oryzae
Length = 140
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
+ VL +D+ C V L C ++TV + AL+ +NR FD++I D+ MP MD
Sbjct: 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAY-QNRQ-FDVIIMDIQMPVMD 68
Query: 84 GFKLLEHV 91
G + + +
Sbjct: 69 GLEAVSEI 76
>pdb|3I5A|A Chain A, Crystal Structure Of Full-Length Wpsr From Pseudomonas
Syringae
Length = 334
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 72 LVISDVHMPDMDGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK-PV 127
+++ D+ MP +DG L+ L D+P+I+LS D + GA DYL+K P
Sbjct: 64 VILQDLVMPGLDGLTLVREYRSNPLTRDIPIIVLSTKEDPLIKSAAFAAGANDYLVKLPD 123
Query: 128 RIEELKNIWQH 138
IE + I H
Sbjct: 124 NIELVARIRYH 134
>pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|B Chain B, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|C Chain C, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|D Chain D, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|E Chain E, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|F Chain F, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|G Chain G, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|H Chain H, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|I Chain I, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|J Chain J, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|K Chain K, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|L Chain L, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|M Chain M, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|N Chain N, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|O Chain O, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|P Chain P, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|Q Chain Q, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|R Chain R, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|S Chain S, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|T Chain T, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|U Chain U, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|V Chain V, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|W Chain W, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|X Chain X, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
Length = 132
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 15/121 (12%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVIS--DVHMPDM 82
R+L VDDD +E L+ ++V + + A L + F+ I D+ MP +
Sbjct: 8 RILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKL----STFEPAIMTLDLSMPKL 63
Query: 83 DGFKLLEHVGLE--MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPV-------RIEELK 133
DG ++ + + P I++ + D + + +T GA DYL KP RI +L
Sbjct: 64 DGLDVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLV 123
Query: 134 N 134
N
Sbjct: 124 N 124
>pdb|3T8Y|A Chain A, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
pdb|3T8Y|B Chain B, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
Length = 164
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 57/106 (53%), Gaps = 4/106 (3%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRN-NFDLVISDVHMPDM 82
+RVL VDD VL++ + + Q ++ V A L+ + + D++ D+ MP++
Sbjct: 26 IRVLVVDDSAFMRMVLKDIIDS-QPDMKVVGFAKDGLEAVEKAIELKPDVITMDIEMPNL 84
Query: 83 DGFKLLEHVGLEMDLPVIMLSAYGD--TKLVMKGITHGACDYLLKP 126
+G + L+ + + VIM+S+ + + ++ + +GA D++ KP
Sbjct: 85 NGIEALKLIMKKAPTRVIMVSSLTEEGAAITIEALRNGAVDFITKP 130
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
++L V+D+ + V ++ ++ + + + N V A+ + N +++DLV+ DV MP +DG
Sbjct: 10 KILLVEDNKINIMVAKSMMKQLGHTMDIANNGVEAITAI--NSSSYDLVLMDVCMPVLDG 67
Query: 85 FK 86
K
Sbjct: 68 LK 69
>pdb|3KYJ|B Chain B, Crystal Structure Of The P1 Domain Of Chea3 In Complex
With Chey6 From R. Sphaeroides
Length = 145
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRE--NRNNFDLVISDVHMPDMD 83
V+ VDD + +F++ + V QA + L + + N DL++ D+ MP MD
Sbjct: 16 VMIVDDAAMMRLYIASFIKTLP-DFKVVAQAANGQEALDKLAAQPNVDLILLDIEMPVMD 74
Query: 84 GFKLLEHVGLEMDLPVIMLSA 104
G + L H L+ + MLS+
Sbjct: 75 GMEFLRHAKLKTRAKICMLSS 95
>pdb|3B2N|A Chain A, Crystal Structure Of Dna-binding Response Regulator, Luxr
Family, From Staphylococcus Aureus
Length = 133
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 53 TNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE-MDLPVIMLSAYGDTKLV 111
T+ + A+K++ E N ++VI D+ MP M G ++L + + +++ VI+++ +
Sbjct: 35 TDNGLDAMKLIEEY--NPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFKRPGYF 92
Query: 112 MKGITHGACDYLLKPVRIEEL 132
K + + Y+LK IEEL
Sbjct: 93 EKAVVNDVDAYVLKERSIEEL 113
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L V+D+ L++ A Y+V ++L E + +LVI D+++P +G
Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEY--DINLVIMDINLPGKNGL 63
Query: 86 KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
L + + ++ ++ L+ + + G+ GA DY+ KP EL
Sbjct: 64 LLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPREL 110
>pdb|3HDG|A Chain A, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|B Chain B, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|D Chain D, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|E Chain E, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
Length = 137
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 71 DLVISDVHMPDMDGFKLLEHVGLEMDLP-VIMLSAYGDTKLVMKGITHGACDYLLKPV-- 127
D++I+D+ P + G + L+ + P VI++SA+ + K +K I G +L KP+
Sbjct: 53 DVIITDIRXPKLGGLEXLDRIKAGGAKPYVIVISAFSEXKYFIKAIELGVHLFLPKPIEP 112
Query: 128 -RIEELKNIWQHV 139
R+ E ++H+
Sbjct: 113 GRLXETLEDFRHI 125
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
Length = 123
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
+L V+D+ L++ A Y+V ++L E + +LVI D+++P +G
Sbjct: 6 ILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEXHQILSEY--DINLVIXDINLPGKNGL 63
Query: 86 KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
L + + ++ + L+ + + G+ GA DY+ KP EL
Sbjct: 64 LLARELREQANVALXFLTGRDNEVDKILGLEIGADDYITKPFNPREL 110
>pdb|3CWO|X Chain X, A BetaALPHA-Barrel Built By The Combination Of Fragments
From Different Folds
Length = 237
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 24/110 (21%)
Query: 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPD 81
+G RVL VDD T +AV K L+ D+V D+ MP+
Sbjct: 1 MGKRVLIVDD------------------ATNGREAVEKYKELKP-----DIVTMDITMPE 37
Query: 82 MDGFKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIE 130
M+G ++ + ++ + +I+ SA G +V++ I GA D+++ +E
Sbjct: 38 MNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNTAAVE 87
>pdb|3RQI|A Chain A, Crystal Structure Of A Response Regulator Protein From
Burkholderia Pseudomallei With A Phosphorylated Aspartic
Acid, Calcium Ion And Citrate
Length = 184
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Query: 27 LAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFK 86
L +DD+ L L Y V + ALK+ + F+ + +H+ + G
Sbjct: 11 LVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEK--FEFITVXLHLGNDSGLS 68
Query: 87 LLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
L+ + L+ D +++L+ Y ++ + GA +YL KP +E +
Sbjct: 69 LIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESI 115
>pdb|3BRE|A Chain A, Crystal Structure Of P.Aeruginosa Pa3702
pdb|3BRE|B Chain B, Crystal Structure Of P.Aeruginosa Pa3702
Length = 358
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 72 LVISDVHMPDMDGFKLLEHVG---LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK-PV 127
+++ D+ MP +DG LL D+P+I+LS + + GA DYL+K P
Sbjct: 66 VILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPD 125
Query: 128 RIEELKNIWQH 138
IE + I H
Sbjct: 126 AIELVARIRYH 136
>pdb|3LUF|A Chain A, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3LUF|B Chain B, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|A Chain A, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|B Chain B, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
Length = 259
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
+ VL VDD T LR +V + A AL L E LV+ D + P++D
Sbjct: 125 IEVLVVDDSRTSRHRTXAQLRKQLLQVHEASHAREALATL-EQHPAIRLVLVDYYXPEID 183
Query: 84 GFKLLEHVGL---EMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELK 133
G L+ + + L +I +S L + + GA D+L +P EEL+
Sbjct: 184 GISLVRXLRERYSKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQ 236
>pdb|2B4A|A Chain A, Crystal Structure Of A Response Regulator Receiver Domain
Protein (Bh3024) From Bacillus Halodurans C-125 At 2.42
A Resolution
Length = 138
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83
RV V+D+P+ +++ L EVTV + + +A R + DL+I + D+
Sbjct: 16 FRVTLVEDEPSHATLIQYHLNQLGAEVTV-HPSGSAFFQHRSQLSTCDLLIVSDQLVDLS 74
Query: 84 GFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELK 133
F LL+ V + P +++ G +L+ + YL KP I EL+
Sbjct: 75 IFSLLDIVKEQTKQPSVLILTTGRHELIES--SEHNLSYLQKPFAISELR 122
>pdb|3EQZ|A Chain A, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
pdb|3EQZ|B Chain B, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
Length = 135
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
RV VDDD +L+ + V L + + N D++I D+ MPDMDG
Sbjct: 5 RVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTL---SLNKQDIIILDLMMPDMDG 61
Query: 85 FKLLEHVGLEMDLP--VIMLSAYGDTKLVMKGITHGA 119
+++ H+ E P +I++S Y G+ H A
Sbjct: 62 IEVIRHLA-EHKSPASLILISGYD------SGVLHSA 91
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
pdb|3HEB|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
Length = 152
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 12/125 (9%)
Query: 22 IGMRVLAVDDDPTCLKVLENFLR--ACQYEVTVTNQAVTALKML-------RENRNNFDL 72
+ + ++ ++DD +++E +R E+ +AL L R + L
Sbjct: 3 LSVTIVXIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQL 62
Query: 73 VISDVHMPDMDGFKLLEHVGLEMDL---PVIMLSAYGDTKLVMKGITHGACDYLLKPVRI 129
V+ D+++PD G +L+ V PV++L+ D + + + GA Y+ KPV
Sbjct: 63 VLLDLNLPDXTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNY 122
Query: 130 EELKN 134
E N
Sbjct: 123 ENFAN 127
>pdb|3KYI|B Chain B, Crystal Structure Of The Phosphorylated P1 Domain Of Chea3
In Complex With Chey6 From R. Sphaeroides
Length = 145
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRE--NRNNFDLVISDVHMPDMD 83
V+ VDD + +F++ + V QA + L + + N DL++ ++ MP MD
Sbjct: 16 VMIVDDAAMMRLYIASFIKTLP-DFKVVAQAANGQEALDKLAAQPNVDLILLNIEMPVMD 74
Query: 84 GFKLLEHVGLEMDLPVIMLSA 104
G + L H L+ + ML++
Sbjct: 75 GMEFLRHAKLKTRAKICMLAS 95
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With
Mg2+
Length = 206
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Query: 18 DKFPIGMRVLAVDDDPTCLKVLENFLRACQY-EVTVTNQAVTALKMLRE----------- 65
D+F G RVL VDD+ KV L+ EV + AL+++ E
Sbjct: 56 DEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSV 115
Query: 66 NRNNFDLVISDVHMPDMDGFK 86
++ FD + D MP+MDG++
Sbjct: 116 DKLPFDYIFMDCQMPEMDGYE 136
>pdb|3SY8|A Chain A, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|B Chain B, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|C Chain C, Crystal Structure Of The Response Regulator Rocr
pdb|3SY8|D Chain D, Crystal Structure Of The Response Regulator Rocr
Length = 400
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 24 MRVLAVDDDP----TCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHM 79
+ VL ++D+P + L+ + E +AV L E+ + D+ I D+ M
Sbjct: 4 LNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAIL----ESCGHVDIAICDLQM 59
Query: 80 PDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGAC 120
MDG L H L + ++LS+ D L I+ C
Sbjct: 60 SGMDGLAFLRHASLSGKVHSVILSSEVDPILRQATISMIEC 100
>pdb|2LLE|A Chain A, Computational Design Of An Eight-Stranded
(BetaALPHA)-Barrel From Fragments Of Different Folds
Length = 234
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 71 DLVISDVHMPDMDGFKLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRI 129
D+V D+ MP+M+G ++ + ++ + +I+ SA G +V++ I GA +++ +
Sbjct: 27 DIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKGFIVNTAAV 86
Query: 130 E 130
E
Sbjct: 87 E 87
>pdb|3KHT|A Chain A, Crystal Structure Of Response Regulator From Hahella
Chejuensis
Length = 144
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 25 RVLAVDDDPTCLKVLENFLRA----CQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMP 80
RVL V+D+P + ++ L CQ E + AL +++ + +DL+I D+ +P
Sbjct: 7 RVLVVEDNPDDIALIRRVLDRKDIHCQLEFV--DNGAKALYQVQQAK--YDLIILDIGLP 62
Query: 81 DMDGFKLLEHV---GLEMDLPVIMLS 103
+GF++ V G P+++L+
Sbjct: 63 IANGFEVXSAVRKPGANQHTPIVILT 88
>pdb|2LPM|A Chain A, Chemical Shift And Structure Assignments For Sma0114
Length = 123
Score = 33.1 bits (74), Expect = 0.58, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVT-NQAVTALKMLRENRNNFDLVISDVHMPDM 82
+RVL V+D+ ++E+ L +EV T ++ AL + R + FD+ I DV++
Sbjct: 9 LRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIAR--KGQFDIAIIDVNLDGE 66
Query: 83 DGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNI 135
+ + + + E ++P I + YG L + + L KP EL+ +
Sbjct: 67 PSYPVADILA-ERNVPFIFATGYGSKGLDTR---YSNIPLLTKPFLDSELEAV 115
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
pdb|1K66|B Chain B, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
Length = 149
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 72 LVISDVHMPDMDGFKLLEHVGLE---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVR 128
+++ D+++P DG ++L+ + + +PV++++ + K + ++ Y++KP+
Sbjct: 65 VILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLE 124
Query: 129 IEELKNIWQHVIR 141
I+ L Q I+
Sbjct: 125 IDRLTETVQTFIK 137
>pdb|3H5I|A Chain A, Crystal Structure Of The N-Terminal Domain Of A Response
RegulatorSENSORY BOXGGDEF 3-Domain Protein From
Carboxydothermus Hydrogenoformans
Length = 140
Score = 32.3 bits (72), Expect = 0.84, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNF--DLVISDVHMPD- 81
++L V+D K + N L Y V + A+T + + + DL++ D+ + +
Sbjct: 7 KILIVEDSKFQAKTIANILNKYGYTVEI---ALTGEAAVEKVSGGWYPDLILMDIELGEG 63
Query: 82 MDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141
MDG + + +LPV+ L+A+ + +V K + A Y++K + L I + +R
Sbjct: 64 MDGVQTALAIQQISELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALR 123
>pdb|3N0R|A Chain A, Structure Of The Phyr Stress Response Regulator At 1.25
Angstrom Resolution
Length = 286
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 14/111 (12%)
Query: 12 CEDGDIDKF----------PIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALK 61
C+ G++++ + VL ++D+P +E +R ++ VT+ A T +
Sbjct: 139 CDFGEVERLIGDAQAEIDAELATEVLIIEDEPVIAADIEALVRELGHD--VTDIAATRGE 196
Query: 62 MLRE-NRNNFDLVISDVHMPD-MDGFKLLEHVGLEMDLPVIMLSAYGDTKL 110
L R LV++D+ + D G ++ + D+PVI ++A+ + L
Sbjct: 197 ALEAVTRRTPGLVLADIQLADGSSGIDAVKDILGRXDVPVIFITAFPERLL 247
>pdb|3GRC|A Chain A, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
pdb|3GRC|B Chain B, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
pdb|3GRC|C Chain C, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
pdb|3GRC|D Chain D, Crystal Structure Of A Sensor Protein From Polaromonas Sp.
Js666
Length = 140
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
R+L +DDP ++L L ++ + A AL+ + R + D+++PD DG
Sbjct: 8 RILICEDDPDIARLLNLXLEKGGFDSDXVHSAAQALEQVA--RRPYAAXTVDLNLPDQDG 65
Query: 85 FKLLEHVGLE---MDLPVIMLSA 104
L+ + + DL ++++SA
Sbjct: 66 VSLIRALRRDSRTRDLAIVVVSA 88
>pdb|3NHM|A Chain A, Crystal Structure Of A Response Regulator From Myxococcus
Xanthus
pdb|3NHM|B Chain B, Crystal Structure Of A Response Regulator From Myxococcus
Xanthus
Length = 133
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 19/113 (16%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84
+VL V++ T + L L + +++ T + L+ + D++ISDV+ DG
Sbjct: 6 KVLIVENSWTXRETLR-LLLSGEFDCTTAADGASGLQQALAHPP--DVLISDVNXDGXDG 62
Query: 85 FKLLEHVGLEMDL---PVIMLSAYGDTKLVMKGITHGACD------YLLKPVR 128
+ L H E L PVI +S Y T G D YL+KPV+
Sbjct: 63 YALCGHFRSEPTLKHIPVIFVSGYAPR-------TEGPADQPVPDAYLVKPVK 108
>pdb|3N53|A Chain A, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
pdb|3N53|B Chain B, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
Length = 140
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHM----- 79
++L +D L+NFL + +Y V + AL+ + + ++ DLVI D +
Sbjct: 5 KILIIDQQDFSRIELKNFLDS-EYLVIESKNEKEALEQI--DHHHPDLVILDXDIIGENS 61
Query: 80 PDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
P++ KL GL+ ++P+I+L + + ++ G+ GA DYL KP +L
Sbjct: 62 PNL-CLKLKRSKGLK-NVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDL 112
>pdb|3CG4|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (Chey- Like) From Methanospirillum Hungatei Jf-1
Length = 142
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
Query: 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF 85
V VDDD ++ L + + + + +L++ + +V+ D+ P DG+
Sbjct: 10 VXIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSG--VVLLDIXXPGXDGW 67
Query: 86 KLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEEL 132
+ + LE + ++ L+A G+ DY+ KP E+L
Sbjct: 68 DTIRAILDNSLEQGIAIVXLTAKNAPDAKXIGLQEYVVDYITKPFDNEDL 117
>pdb|2ZAY|A Chain A, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
pdb|2ZAY|B Chain B, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
Length = 147
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Query: 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPD--- 81
R++ VD L + L +++ A+ A+ + + + L+I++ +MP
Sbjct: 10 RIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPH--LIITEANMPKISG 67
Query: 82 MDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPV 127
MD F L+ +PVI LS K + + G D++ KPV
Sbjct: 68 MDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPV 113
>pdb|3CG0|A Chain A, Crystal Structure Of Signal Receiver Domain Of Modulated
Diguanylate Cyclase From Desulfovibrio Desulfuricans
G20, An Example Of Alternate Folding
pdb|3CG0|B Chain B, Crystal Structure Of Signal Receiver Domain Of Modulated
Diguanylate Cyclase From Desulfovibrio Desulfuricans
G20, An Example Of Alternate Folding
pdb|3CG0|C Chain C, Crystal Structure Of Signal Receiver Domain Of Modulated
Diguanylate Cyclase From Desulfovibrio Desulfuricans
G20, An Example Of Alternate Folding
pdb|3CG0|D Chain D, Crystal Structure Of Signal Receiver Domain Of Modulated
Diguanylate Cyclase From Desulfovibrio Desulfuricans
G20, An Example Of Alternate Folding
Length = 140
Score = 29.6 bits (65), Expect = 6.2, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 9/131 (6%)
Query: 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNF--------DLVIS 75
M + A DD P L V + L A + + + L + D+ +
Sbjct: 1 MSLTASDDLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALV 60
Query: 76 DVHM-PDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKN 134
D+ + +DG + + +LP+I +++ D + + YL KPV + L
Sbjct: 61 DIMLCGALDGVETAARLAAGCNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHR 120
Query: 135 IWQHVIRRKKV 145
+ I +KK+
Sbjct: 121 SIEMAIHKKKL 131
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 286 KDSSYLRIGALDGFGDLRSLNSPGR----LSSSAISSSYVPGNMFGRFNSTSGLSMHGIA 341
K S + +GA+D S +S G ++ S +PGN +G +N TS S H
Sbjct: 170 KYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVSIQSTLPGNKYGAYNGTSXASPHVAG 229
Query: 342 SSGMIQPGHSQSFNT 356
++ +I H NT
Sbjct: 230 AAALILSKHPNWTNT 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,651,252
Number of Sequences: 62578
Number of extensions: 710966
Number of successful extensions: 1480
Number of sequences better than 100.0: 185
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 1293
Number of HSP's gapped (non-prelim): 189
length of query: 681
length of database: 14,973,337
effective HSP length: 105
effective length of query: 576
effective length of database: 8,402,647
effective search space: 4839924672
effective search space used: 4839924672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)