Query 005719
Match_columns 681
No_of_seqs 357 out of 2022
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 12:43:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03162 golden-2 like transcr 99.9 7.6E-24 1.6E-28 221.9 9.4 66 207-272 230-295 (526)
2 COG0745 OmpR Response regulato 99.8 1.5E-19 3.3E-24 184.7 16.4 118 24-144 1-120 (229)
3 TIGR01557 myb_SHAQKYF myb-like 99.7 1.2E-18 2.6E-23 141.8 5.9 55 212-266 1-56 (57)
4 COG2204 AtoC Response regulato 99.7 4E-17 8.8E-22 180.8 16.6 119 24-144 5-124 (464)
5 COG4753 Response regulator con 99.7 3E-17 6.4E-22 181.8 14.5 118 24-143 2-123 (475)
6 COG4565 CitB Response regulato 99.7 1.5E-16 3.2E-21 159.3 14.7 120 24-145 1-123 (224)
7 PF00072 Response_reg: Respons 99.7 3.8E-16 8.2E-21 137.7 15.6 110 26-137 1-112 (112)
8 COG4566 TtrR Response regulato 99.7 6E-16 1.3E-20 152.5 13.4 120 22-143 3-123 (202)
9 COG0784 CheY FOG: CheY-like re 99.6 9.3E-15 2E-19 131.9 17.2 120 21-141 3-125 (130)
10 PLN03029 type-a response regul 99.6 7E-15 1.5E-19 149.0 16.7 122 22-143 7-149 (222)
11 COG2197 CitB Response regulato 99.6 3.5E-14 7.6E-19 143.4 20.7 123 24-148 1-126 (211)
12 PRK10046 dpiA two-component re 99.6 1.6E-14 3.4E-19 145.3 17.7 122 21-144 2-126 (225)
13 PRK11173 two-component respons 99.6 3.1E-14 6.7E-19 142.1 17.4 119 23-143 3-121 (237)
14 PRK10529 DNA-binding transcrip 99.6 3.4E-14 7.3E-19 139.7 17.3 118 24-143 2-119 (225)
15 PRK10816 DNA-binding transcrip 99.6 3.9E-14 8.5E-19 139.3 17.2 117 24-142 1-118 (223)
16 PRK10766 DNA-binding transcrip 99.6 5.4E-14 1.2E-18 137.9 17.2 119 23-143 2-120 (221)
17 COG3437 Response regulator con 99.6 9.5E-15 2.1E-19 155.8 12.7 118 22-141 13-134 (360)
18 PRK10643 DNA-binding transcrip 99.6 7.4E-14 1.6E-18 135.8 17.4 118 24-143 1-119 (222)
19 KOG0519 Sensory transduction h 99.6 1.4E-14 3.1E-19 171.1 14.7 123 17-140 660-784 (786)
20 PRK09836 DNA-binding transcrip 99.6 8.6E-14 1.9E-18 137.2 17.3 117 24-142 1-118 (227)
21 PRK11517 transcriptional regul 99.6 1.2E-13 2.5E-18 135.1 17.0 117 24-142 1-117 (223)
22 PRK10336 DNA-binding transcrip 99.5 1.5E-13 3.2E-18 133.8 17.0 117 24-142 1-118 (219)
23 PRK10701 DNA-binding transcrip 99.5 1.5E-13 3.2E-18 137.2 17.1 118 24-143 2-119 (240)
24 TIGR02154 PhoB phosphate regul 99.5 1.8E-13 3.9E-18 133.2 17.1 118 23-142 2-122 (226)
25 PRK09483 response regulator; P 99.5 8.3E-13 1.8E-17 128.8 21.6 188 24-268 2-192 (217)
26 PRK10955 DNA-binding transcrip 99.5 1.6E-13 3.4E-18 135.0 16.6 117 24-143 2-118 (232)
27 PRK13856 two-component respons 99.5 1.7E-13 3.8E-18 137.5 17.0 117 25-143 3-120 (241)
28 PRK10161 transcriptional regul 99.5 2.2E-13 4.8E-18 134.5 17.3 117 24-142 3-122 (229)
29 CHL00148 orf27 Ycf27; Reviewed 99.5 2.5E-13 5.3E-18 134.3 17.5 119 23-143 6-124 (240)
30 PRK09468 ompR osmolarity respo 99.5 2.5E-13 5.4E-18 135.2 16.9 119 23-143 5-124 (239)
31 COG3706 PleD Response regulato 99.5 1.4E-13 2.9E-18 152.0 16.4 122 22-145 131-255 (435)
32 PRK10430 DNA-binding transcrip 99.5 2.6E-13 5.6E-18 137.5 17.1 120 24-143 2-124 (239)
33 TIGR03787 marine_sort_RR prote 99.5 4.2E-13 9E-18 132.1 17.4 117 25-143 2-121 (227)
34 PRK15347 two component system 99.5 1.7E-13 3.7E-18 162.6 17.2 119 21-141 688-811 (921)
35 PRK11083 DNA-binding response 99.5 4.1E-13 8.8E-18 131.2 16.8 117 24-142 4-121 (228)
36 PRK10841 hybrid sensory kinase 99.5 2.4E-13 5.2E-18 163.5 17.8 120 22-143 800-920 (924)
37 PRK10840 transcriptional regul 99.5 5.4E-13 1.2E-17 132.6 16.4 121 23-145 3-129 (216)
38 PRK11107 hybrid sensory histid 99.5 2.9E-13 6.2E-18 160.4 16.7 119 21-141 665-786 (919)
39 COG3947 Response regulator con 99.5 9.9E-14 2.1E-18 144.3 10.8 114 24-141 1-115 (361)
40 PRK09958 DNA-binding transcrip 99.5 9.6E-13 2.1E-17 127.2 16.0 118 24-143 1-120 (204)
41 TIGR01387 cztR_silR_copR heavy 99.5 1.3E-12 2.8E-17 126.7 16.5 116 26-143 1-117 (218)
42 PRK11466 hybrid sensory histid 99.5 6.3E-13 1.4E-17 158.1 16.6 120 22-142 680-800 (914)
43 PRK14084 two-component respons 99.4 2E-12 4.4E-17 130.3 16.6 115 24-142 1-118 (246)
44 PRK11697 putative two-componen 99.4 2.2E-12 4.8E-17 129.0 16.0 115 24-142 2-118 (238)
45 TIGR02875 spore_0_A sporulatio 99.4 2.5E-12 5.3E-17 131.5 16.4 117 23-141 2-123 (262)
46 COG4567 Response regulator con 99.4 1E-12 2.2E-17 125.7 12.5 111 25-137 11-122 (182)
47 PRK09581 pleD response regulat 99.4 7.6E-13 1.7E-17 143.1 13.0 118 22-142 154-274 (457)
48 PRK10360 DNA-binding transcrip 99.4 3E-12 6.6E-17 122.9 15.7 116 24-143 2-119 (196)
49 TIGR02956 TMAO_torS TMAO reduc 99.4 1.4E-12 3.1E-17 155.7 16.3 119 22-142 701-823 (968)
50 PRK10365 transcriptional regul 99.4 1.6E-12 3.5E-17 142.7 15.3 119 22-142 4-123 (441)
51 PRK15115 response regulator Gl 99.4 2.6E-12 5.7E-17 141.6 16.1 118 23-142 5-123 (444)
52 PRK10710 DNA-binding transcrip 99.4 7E-12 1.5E-16 124.0 17.5 117 24-142 11-127 (240)
53 PRK15479 transcriptional regul 99.4 7E-12 1.5E-16 121.9 17.1 118 24-143 1-119 (221)
54 PRK11361 acetoacetate metaboli 99.4 3.2E-12 6.9E-17 141.2 16.6 120 21-142 2-122 (457)
55 PRK09935 transcriptional regul 99.4 6.4E-12 1.4E-16 121.2 16.6 119 23-143 3-124 (210)
56 PRK10923 glnG nitrogen regulat 99.4 4.4E-12 9.4E-17 141.0 17.4 117 24-142 4-121 (469)
57 PRK11091 aerobic respiration c 99.4 3.7E-12 8E-17 149.6 16.2 116 23-141 525-644 (779)
58 PRK12555 chemotaxis-specific m 99.4 4.9E-12 1.1E-16 135.4 15.7 102 24-127 1-106 (337)
59 PRK09959 hybrid sensory histid 99.4 4.1E-12 8.9E-17 155.7 16.9 120 20-141 955-1075(1197)
60 PRK10403 transcriptional regul 99.4 6.9E-11 1.5E-15 113.7 21.7 190 23-269 6-198 (215)
61 TIGR02915 PEP_resp_reg putativ 99.4 6.4E-12 1.4E-16 138.6 15.8 113 26-142 1-119 (445)
62 PRK13435 response regulator; P 99.4 1.5E-11 3.2E-16 114.2 15.2 117 22-143 4-122 (145)
63 PRK10610 chemotaxis regulatory 99.4 4.1E-11 8.8E-16 103.5 17.0 118 23-142 5-126 (129)
64 PRK09390 fixJ response regulat 99.4 1.2E-11 2.6E-16 117.2 14.7 120 21-142 1-121 (202)
65 TIGR01818 ntrC nitrogen regula 99.4 1.1E-11 2.3E-16 137.4 16.0 115 26-142 1-116 (463)
66 PRK09581 pleD response regulat 99.3 3.4E-11 7.3E-16 130.3 17.6 118 24-143 3-123 (457)
67 PRK00742 chemotaxis-specific m 99.3 3E-11 6.6E-16 130.0 16.2 104 23-128 3-110 (354)
68 PRK15369 two component system 99.3 8.3E-11 1.8E-15 111.9 16.3 120 22-143 2-124 (211)
69 COG2201 CheB Chemotaxis respon 99.3 5.2E-11 1.1E-15 128.3 14.4 103 24-128 2-108 (350)
70 PRK13558 bacterio-opsin activa 99.3 4E-11 8.7E-16 138.5 14.6 117 23-141 7-126 (665)
71 PRK10100 DNA-binding transcrip 99.3 6E-11 1.3E-15 120.5 13.7 119 23-148 10-133 (216)
72 PRK10651 transcriptional regul 99.2 2.1E-10 4.6E-15 110.6 15.8 119 23-143 6-127 (216)
73 PRK11475 DNA-binding transcrip 99.2 1.6E-10 3.5E-15 116.7 13.2 107 36-144 3-117 (207)
74 PRK09191 two-component respons 99.2 4.3E-10 9.3E-15 114.1 15.6 116 23-142 137-254 (261)
75 PRK13837 two-component VirA-li 99.2 3.2E-10 7E-15 135.0 16.3 117 23-142 697-814 (828)
76 PRK15411 rcsA colanic acid cap 99.1 5.4E-10 1.2E-14 112.5 14.1 117 24-143 1-124 (207)
77 COG3707 AmiR Response regulato 99.1 5.3E-10 1.1E-14 111.2 12.4 120 22-143 4-124 (194)
78 cd00156 REC Signal receiver do 99.1 1.7E-09 3.8E-14 88.6 13.0 111 27-139 1-112 (113)
79 PRK13557 histidine kinase; Pro 99.0 2.7E-09 5.8E-14 118.1 15.5 119 22-141 414-534 (540)
80 PRK10693 response regulator of 99.0 4.9E-09 1.1E-13 111.3 12.5 89 52-142 2-92 (303)
81 PRK15029 arginine decarboxylas 98.8 2.9E-08 6.4E-13 116.9 14.3 117 24-142 1-133 (755)
82 COG3279 LytT Response regulato 98.7 6.3E-08 1.4E-12 100.3 11.6 115 24-142 2-119 (244)
83 PRK11107 hybrid sensory histid 98.2 1.9E-05 4.1E-10 94.3 14.5 115 20-140 533-650 (919)
84 COG3706 PleD Response regulato 97.7 3.5E-05 7.5E-10 86.1 5.5 93 48-143 13-105 (435)
85 PF06490 FleQ: Flagellar regul 97.3 0.002 4.3E-08 59.2 10.3 106 25-139 1-107 (109)
86 smart00448 REC cheY-homologous 97.3 0.0019 4.2E-08 45.7 8.2 55 24-80 1-55 (55)
87 PF00249 Myb_DNA-binding: Myb- 96.3 0.0068 1.5E-07 47.4 4.4 48 214-264 1-48 (48)
88 cd02071 MM_CoA_mut_B12_BD meth 95.7 0.28 6.1E-06 45.6 13.4 110 25-136 1-120 (122)
89 PRK02261 methylaspartate mutas 95.5 0.54 1.2E-05 45.1 14.6 116 22-140 2-134 (137)
90 PRK10618 phosphotransfer inter 95.4 0.018 3.9E-07 70.3 5.6 53 19-79 685-737 (894)
91 cd02067 B12-binding B12 bindin 95.1 0.31 6.7E-06 44.6 11.3 94 30-125 10-109 (119)
92 TIGR00640 acid_CoA_mut_C methy 94.6 1.4 3E-05 42.0 14.6 116 24-141 3-128 (132)
93 PF03709 OKR_DC_1_N: Orn/Lys/A 94.4 0.4 8.7E-06 44.3 10.2 106 35-142 5-114 (115)
94 PRK15399 lysine decarboxylase 91.6 1.7 3.7E-05 52.2 12.5 115 24-142 1-123 (713)
95 PF02310 B12-binding: B12 bind 91.5 3.5 7.7E-05 37.2 11.9 94 30-126 11-112 (121)
96 PRK15400 lysine decarboxylase 90.7 2 4.4E-05 51.6 11.9 115 24-142 1-123 (714)
97 TIGR03815 CpaE_hom_Actino heli 90.7 0.67 1.4E-05 49.8 7.3 84 47-139 1-85 (322)
98 smart00426 TEA TEA domain. 89.4 0.4 8.6E-06 40.9 3.3 48 215-262 4-67 (68)
99 cd04728 ThiG Thiazole synthase 89.3 4.9 0.00011 42.5 12.0 111 24-142 94-226 (248)
100 PF10087 DUF2325: Uncharacteri 89.0 3.3 7.3E-05 36.9 9.3 90 25-115 1-93 (97)
101 PRK00208 thiG thiazole synthas 88.6 4.1 8.8E-05 43.1 10.8 111 24-142 94-226 (250)
102 TIGR01501 MthylAspMutase methy 88.5 10 0.00023 36.5 12.8 110 30-141 12-133 (134)
103 cd02069 methionine_synthase_B1 87.0 6.3 0.00014 40.5 11.0 104 22-127 87-203 (213)
104 cd02070 corrinoid_protein_B12- 86.8 8.7 0.00019 38.8 11.9 99 23-126 82-192 (201)
105 PRK01130 N-acetylmannosamine-6 85.4 14 0.0003 37.5 12.6 86 37-125 108-202 (221)
106 COG4999 Uncharacterized domain 85.4 3.9 8.5E-05 38.9 7.7 106 21-134 9-119 (140)
107 PF01285 TEA: TEA/ATTS domain 84.6 0.5 1.1E-05 53.5 1.8 57 208-265 43-114 (431)
108 COG2185 Sbm Methylmalonyl-CoA 83.5 25 0.00055 34.4 12.6 113 23-139 12-136 (143)
109 PRK03958 tRNA 2'-O-methylase; 83.3 12 0.00025 37.8 10.5 94 25-126 33-129 (176)
110 PRK00043 thiE thiamine-phospha 79.0 26 0.00056 34.9 11.6 68 53-124 111-187 (212)
111 TIGR02370 pyl_corrinoid methyl 78.7 26 0.00057 35.4 11.5 97 24-125 85-193 (197)
112 CHL00162 thiG thiamin biosynth 78.6 36 0.00079 36.4 12.7 98 41-142 131-240 (267)
113 COG0512 PabA Anthranilate/para 78.2 6.7 0.00015 40.0 7.0 78 23-104 1-82 (191)
114 PF01596 Methyltransf_3: O-met 77.7 11 0.00024 38.5 8.6 71 19-91 66-141 (205)
115 cd02072 Glm_B12_BD B12 binding 77.6 37 0.0008 32.5 11.4 104 30-136 10-126 (128)
116 PRK09426 methylmalonyl-CoA mut 77.3 33 0.00071 41.7 13.6 115 25-141 584-708 (714)
117 cd04729 NanE N-acetylmannosami 77.0 30 0.00064 35.2 11.5 71 52-125 129-206 (219)
118 PF01408 GFO_IDH_MocA: Oxidore 76.8 20 0.00043 32.1 9.2 106 24-142 1-112 (120)
119 PF03602 Cons_hypoth95: Conser 75.1 11 0.00023 37.9 7.6 67 24-92 66-138 (183)
120 KOG3841 TEF-1 and related tran 72.4 13 0.00029 41.3 7.9 53 212-264 74-142 (455)
121 PF07688 KaiA: KaiA domain; I 72.3 16 0.00034 39.0 8.0 114 26-142 3-119 (283)
122 cd02068 radical_SAM_B12_BD B12 70.5 44 0.00096 30.8 10.1 105 35-141 4-112 (127)
123 cd04730 NPD_like 2-Nitropropan 69.4 62 0.0013 32.8 11.7 82 41-125 96-185 (236)
124 TIGR00007 phosphoribosylformim 69.3 54 0.0012 33.4 11.3 66 57-124 148-217 (230)
125 TIGR03151 enACPred_II putative 67.6 43 0.00094 36.3 10.6 85 39-126 101-191 (307)
126 cd04724 Tryptophan_synthase_al 67.0 22 0.00048 37.1 8.0 57 84-140 64-126 (242)
127 PRK01911 ppnK inorganic polyph 65.1 32 0.0007 37.2 9.0 101 24-143 1-121 (292)
128 TIGR02026 BchE magnesium-proto 65.1 67 0.0015 37.0 12.1 107 32-141 21-137 (497)
129 PF09936 Methyltrn_RNA_4: SAM- 64.6 54 0.0012 33.4 9.7 101 25-130 44-163 (185)
130 PLN02591 tryptophan synthase 64.3 22 0.00048 37.6 7.4 58 83-140 65-128 (250)
131 PTZ00314 inosine-5'-monophosph 64.1 52 0.0011 38.2 11.0 34 93-126 341-374 (495)
132 COG2022 ThiG Uncharacterized e 63.5 44 0.00096 35.3 9.2 98 40-140 123-231 (262)
133 PF05690 ThiG: Thiazole biosyn 63.1 38 0.00081 35.9 8.6 97 41-141 117-225 (247)
134 PRK10669 putative cation:proto 62.8 58 0.0013 37.9 11.2 95 25-123 419-533 (558)
135 cd03823 GT1_ExpE7_like This fa 62.4 1.3E+02 0.0028 30.7 12.6 66 70-141 263-328 (359)
136 PLN02274 inosine-5'-monophosph 62.4 90 0.002 36.4 12.5 101 22-126 259-381 (505)
137 PRK05749 3-deoxy-D-manno-octul 62.3 70 0.0015 35.3 11.3 111 23-141 262-387 (425)
138 PRK15320 transcriptional activ 62.2 80 0.0017 32.9 10.5 105 25-136 3-109 (251)
139 PRK11840 bifunctional sulfur c 62.1 1E+02 0.0022 34.1 12.1 92 46-141 196-299 (326)
140 cd00331 IGPS Indole-3-glycerol 62.0 1.4E+02 0.0031 30.1 12.6 78 44-124 118-200 (217)
141 PRK13587 1-(5-phosphoribosyl)- 61.5 32 0.0007 35.7 8.0 68 57-125 151-221 (234)
142 PRK15484 lipopolysaccharide 1, 61.4 1.7E+02 0.0036 32.1 14.0 108 24-141 225-343 (380)
143 cd04727 pdxS PdxS is a subunit 61.1 51 0.0011 35.7 9.4 59 83-141 181-246 (283)
144 PF01959 DHQS: 3-dehydroquinat 60.8 47 0.001 37.0 9.3 71 70-141 97-169 (354)
145 PF00534 Glycos_transf_1: Glyc 60.7 1.3E+02 0.0029 28.1 11.5 109 23-143 47-159 (172)
146 PRK05458 guanosine 5'-monophos 60.6 1.3E+02 0.0029 33.2 12.8 98 25-125 113-230 (326)
147 cd03813 GT1_like_3 This family 60.4 79 0.0017 35.8 11.5 107 23-141 324-441 (475)
148 TIGR03088 stp2 sugar transfera 60.2 75 0.0016 33.9 10.8 107 23-141 229-337 (374)
149 cd03313 enolase Enolase: Enola 60.1 60 0.0013 36.6 10.4 109 29-138 209-348 (408)
150 TIGR02311 HpaI 2,4-dihydroxyhe 60.0 95 0.0021 32.7 11.2 99 39-139 3-106 (249)
151 PRK10558 alpha-dehydro-beta-de 60.0 78 0.0017 33.5 10.6 101 37-139 8-113 (256)
152 TIGR03239 GarL 2-dehydro-3-deo 60.0 86 0.0019 33.1 10.9 99 39-139 3-106 (249)
153 PRK12704 phosphodiesterase; Pr 59.9 10 0.00022 44.2 4.3 46 96-141 248-296 (520)
154 PRK05567 inosine 5'-monophosph 59.9 82 0.0018 36.3 11.6 101 22-126 239-361 (486)
155 cd03820 GT1_amsD_like This fam 59.8 1.6E+02 0.0034 29.6 12.5 108 23-141 209-318 (348)
156 TIGR00095 RNA methyltransferas 59.5 97 0.0021 31.1 10.7 68 25-92 74-144 (189)
157 cd02065 B12-binding_like B12 b 59.4 56 0.0012 29.4 8.3 71 30-102 10-86 (125)
158 TIGR00566 trpG_papA glutamine 59.0 35 0.00075 34.1 7.4 75 26-104 2-80 (188)
159 PRK05703 flhF flagellar biosyn 58.6 82 0.0018 35.8 11.1 92 22-114 250-350 (424)
160 TIGR00262 trpA tryptophan synt 58.5 34 0.00073 36.2 7.6 57 83-139 73-136 (256)
161 CHL00200 trpA tryptophan synth 58.4 31 0.00067 36.7 7.3 57 83-139 78-140 (263)
162 PRK10128 2-keto-3-deoxy-L-rham 57.6 99 0.0021 33.1 10.9 100 38-139 8-112 (267)
163 PRK13111 trpA tryptophan synth 57.3 32 0.0007 36.5 7.2 57 83-139 75-138 (258)
164 PRK06843 inosine 5-monophospha 57.2 1.1E+02 0.0024 34.8 11.7 101 22-125 164-285 (404)
165 PRK11889 flhF flagellar biosyn 56.9 1.1E+02 0.0024 35.1 11.5 56 22-77 268-328 (436)
166 PRK03708 ppnK inorganic polyph 56.8 58 0.0012 34.9 9.1 99 24-142 1-112 (277)
167 PLN02871 UDP-sulfoquinovose:DA 56.7 1.2E+02 0.0025 34.2 12.0 105 23-141 290-399 (465)
168 cd04723 HisA_HisF Phosphoribos 55.6 1.1E+02 0.0023 31.8 10.6 68 56-125 148-218 (233)
169 TIGR01334 modD putative molybd 55.6 50 0.0011 35.6 8.3 93 26-122 159-260 (277)
170 PRK08385 nicotinate-nucleotide 55.3 1.1E+02 0.0024 33.0 10.9 93 26-123 157-257 (278)
171 PRK07649 para-aminobenzoate/an 55.3 14 0.0003 37.3 3.9 86 26-119 2-91 (195)
172 cd00564 TMP_TenI Thiamine mono 55.2 80 0.0017 30.5 9.2 68 54-125 103-178 (196)
173 cd00381 IMPDH IMPDH: The catal 55.0 1.1E+02 0.0024 33.5 11.0 100 22-125 105-226 (325)
174 COG0742 N6-adenine-specific me 55.0 24 0.00052 36.0 5.5 53 24-77 67-122 (187)
175 PF04321 RmlD_sub_bind: RmlD s 54.8 45 0.00098 35.3 7.9 80 24-105 1-102 (286)
176 PRK07896 nicotinate-nucleotide 54.7 62 0.0014 35.1 8.9 94 26-123 173-272 (289)
177 PRK13566 anthranilate synthase 54.6 29 0.00063 42.1 7.1 79 22-104 525-606 (720)
178 cd03819 GT1_WavL_like This fam 54.3 2.1E+02 0.0046 29.7 12.8 108 23-140 216-328 (355)
179 PRK00278 trpC indole-3-glycero 53.8 2.6E+02 0.0057 29.5 13.3 90 32-125 145-240 (260)
180 cd04962 GT1_like_5 This family 53.7 1.2E+02 0.0026 32.0 10.9 106 24-141 228-335 (371)
181 cd04722 TIM_phosphate_binding 53.7 77 0.0017 30.0 8.7 56 69-124 136-198 (200)
182 TIGR01302 IMP_dehydrog inosine 53.4 1.1E+02 0.0024 34.9 11.2 101 22-126 235-357 (450)
183 PRK10742 putative methyltransf 53.0 1.2E+02 0.0025 32.5 10.4 57 23-82 110-177 (250)
184 TIGR01182 eda Entner-Doudoroff 53.0 89 0.0019 32.2 9.4 55 79-134 41-95 (204)
185 cd01424 MGS_CPS_II Methylglyox 52.5 1.1E+02 0.0023 27.6 8.9 24 30-53 9-32 (110)
186 PRK00748 1-(5-phosphoribosyl)- 52.5 1.1E+02 0.0025 30.9 10.1 66 57-124 149-219 (233)
187 cd04732 HisA HisA. Phosphorib 52.2 1.8E+02 0.0039 29.5 11.5 67 56-124 148-218 (234)
188 TIGR00343 pyridoxal 5'-phospha 52.1 80 0.0017 34.3 9.1 60 83-142 184-250 (287)
189 PF01729 QRPTase_C: Quinolinat 51.8 51 0.0011 32.8 7.2 95 26-124 53-154 (169)
190 TIGR00308 TRM1 tRNA(guanine-26 51.7 83 0.0018 35.3 9.6 111 24-141 70-189 (374)
191 PRK09922 UDP-D-galactose:(gluc 51.7 1.6E+02 0.0035 31.6 11.7 111 23-143 210-325 (359)
192 TIGR01037 pyrD_sub1_fam dihydr 51.5 1.9E+02 0.0042 30.7 12.1 58 86-143 224-287 (300)
193 PRK12724 flagellar biosynthesi 50.9 1.5E+02 0.0033 34.0 11.5 101 22-124 251-366 (432)
194 cd05212 NAD_bind_m-THF_DH_Cycl 50.7 53 0.0011 31.7 6.9 53 22-81 27-83 (140)
195 PRK04338 N(2),N(2)-dimethylgua 50.2 2.1E+02 0.0045 32.2 12.5 79 24-109 82-163 (382)
196 PRK04885 ppnK inorganic polyph 49.3 55 0.0012 34.9 7.4 56 69-142 35-93 (265)
197 KOG1601 GATA-4/5/6 transcripti 49.3 2.4 5.2E-05 42.8 -2.7 121 18-141 11-138 (340)
198 cd04726 KGPDC_HPS 3-Keto-L-gul 49.1 1.8E+02 0.0039 28.6 10.8 99 23-125 77-186 (202)
199 PRK01231 ppnK inorganic polyph 49.1 1.5E+02 0.0032 32.2 10.7 100 24-142 5-118 (295)
200 PRK14098 glycogen synthase; Pr 49.0 1.5E+02 0.0033 34.1 11.5 112 23-141 336-450 (489)
201 COG4122 Predicted O-methyltran 48.9 43 0.00092 34.9 6.3 59 20-79 81-142 (219)
202 TIGR00262 trpA tryptophan synt 48.8 2.2E+02 0.0048 30.1 11.8 103 23-126 115-228 (256)
203 PRK06015 keto-hydroxyglutarate 48.8 1E+02 0.0022 31.8 8.9 59 76-135 34-92 (201)
204 PRK05718 keto-hydroxyglutarate 48.4 1.9E+02 0.0041 29.9 10.9 92 40-134 9-102 (212)
205 PRK06895 putative anthranilate 48.1 24 0.00051 35.2 4.3 32 24-55 2-33 (190)
206 PRK12726 flagellar biosynthesi 47.8 1.8E+02 0.004 33.1 11.4 56 22-77 233-293 (407)
207 cd01948 EAL EAL domain. This d 47.7 83 0.0018 31.2 8.1 89 39-130 137-239 (240)
208 PF03060 NMO: Nitronate monoox 47.5 1.3E+02 0.0028 32.8 10.2 84 39-125 128-219 (330)
209 PRK06774 para-aminobenzoate sy 47.3 25 0.00054 35.0 4.3 75 26-104 2-80 (191)
210 PLN02781 Probable caffeoyl-CoA 47.2 93 0.002 32.2 8.6 58 21-78 91-153 (234)
211 PLN02476 O-methyltransferase 47.2 1.6E+02 0.0035 31.7 10.6 59 20-78 140-203 (278)
212 PRK13143 hisH imidazole glycer 47.0 45 0.00097 33.6 6.1 44 24-75 1-44 (200)
213 PRK06731 flhF flagellar biosyn 47.0 1.6E+02 0.0036 31.5 10.6 54 23-77 103-162 (270)
214 TIGR01761 thiaz-red thiazoliny 46.6 1.9E+02 0.0042 32.0 11.4 102 22-140 2-112 (343)
215 PRK07765 para-aminobenzoate sy 46.4 30 0.00066 35.4 4.8 80 24-104 1-84 (214)
216 PLN02589 caffeoyl-CoA O-methyl 46.1 1.8E+02 0.004 30.7 10.6 59 20-78 101-165 (247)
217 cd06533 Glyco_transf_WecG_TagA 45.8 1.3E+02 0.0028 29.7 9.0 76 23-102 46-130 (171)
218 PRK06552 keto-hydroxyglutarate 45.7 1.6E+02 0.0036 30.3 10.0 93 41-135 8-104 (213)
219 PRK04302 triosephosphate isome 45.5 3.5E+02 0.0075 27.7 12.4 98 39-138 106-217 (223)
220 PRK14974 cell division protein 45.4 2.9E+02 0.0062 30.6 12.4 104 22-127 167-289 (336)
221 cd02809 alpha_hydroxyacid_oxid 45.3 2E+02 0.0043 30.9 11.0 85 38-125 163-256 (299)
222 PRK07259 dihydroorotate dehydr 45.1 2.9E+02 0.0064 29.4 12.3 59 85-143 223-287 (301)
223 cd03114 ArgK-like The function 45.1 48 0.001 31.9 5.7 43 57-105 81-123 (148)
224 PRK03659 glutathione-regulated 45.0 1.1E+02 0.0023 36.4 9.6 96 24-124 401-517 (601)
225 PRK04457 spermidine synthase; 44.8 2.2E+02 0.0047 30.1 11.0 55 20-78 88-145 (262)
226 TIGR00693 thiE thiamine-phosph 44.6 1.4E+02 0.0031 29.4 9.1 69 52-124 102-179 (196)
227 PRK15427 colanic acid biosynth 44.5 4.8E+02 0.01 29.0 14.5 107 24-141 254-369 (406)
228 cd08179 NADPH_BDH NADPH-depend 44.5 1.6E+02 0.0036 32.5 10.5 64 23-91 23-100 (375)
229 cd03785 GT1_MurG MurG is an N- 43.9 3.9E+02 0.0085 28.1 13.0 65 70-141 253-323 (350)
230 PRK04148 hypothetical protein; 43.7 1E+02 0.0022 29.8 7.6 60 23-86 17-76 (134)
231 cd03818 GT1_ExpC_like This fam 43.6 2.7E+02 0.0059 30.3 12.0 65 70-141 301-365 (396)
232 PRK00811 spermidine synthase; 43.4 2E+02 0.0043 30.7 10.6 60 19-81 96-162 (283)
233 cd08187 BDH Butanol dehydrogen 43.4 1.6E+02 0.0035 32.6 10.3 64 23-91 28-105 (382)
234 TIGR03449 mycothiol_MshA UDP-N 43.3 3.6E+02 0.0078 29.1 12.8 107 24-141 253-367 (405)
235 PRK11359 cyclic-di-GMP phospho 43.0 2.1E+02 0.0046 34.1 11.8 97 38-137 682-792 (799)
236 PRK02155 ppnK NAD(+)/NADH kina 42.0 1.8E+02 0.0039 31.4 10.0 99 25-142 7-119 (291)
237 COG2200 Rtn c-di-GMP phosphodi 41.6 2.2E+02 0.0047 29.9 10.4 99 36-137 138-250 (256)
238 COG0157 NadC Nicotinate-nucleo 41.1 2.1E+02 0.0047 31.0 10.2 91 25-122 160-259 (280)
239 TIGR01306 GMP_reduct_2 guanosi 41.0 2.5E+02 0.0055 31.0 11.0 98 25-125 110-227 (321)
240 PRK03562 glutathione-regulated 41.0 1.2E+02 0.0026 36.1 9.3 51 70-123 465-516 (621)
241 smart00052 EAL Putative diguan 41.0 1.2E+02 0.0026 30.0 8.1 90 38-130 137-240 (241)
242 COG1091 RfbD dTDP-4-dehydrorha 40.9 1.4E+02 0.003 32.4 8.8 79 24-105 1-101 (281)
243 PLN02591 tryptophan synthase 40.1 4.2E+02 0.0091 28.1 12.2 101 26-126 110-219 (250)
244 smart00717 SANT SANT SWI3, AD 40.1 87 0.0019 22.9 5.3 41 215-259 2-42 (49)
245 TIGR00064 ftsY signal recognit 40.0 2.8E+02 0.006 29.6 11.0 55 22-78 99-163 (272)
246 PLN02823 spermine synthase 40.0 68 0.0015 35.4 6.5 57 21-80 125-187 (336)
247 PF14097 SpoVAE: Stage V sporu 39.5 3.5E+02 0.0076 27.5 10.6 75 26-100 3-86 (180)
248 PRK04180 pyridoxal biosynthesi 39.1 1.6E+02 0.0034 32.2 8.9 59 83-141 190-255 (293)
249 cd03801 GT1_YqgM_like This fam 39.0 4.1E+02 0.0089 26.6 12.2 65 70-141 276-340 (374)
250 PF07652 Flavi_DEAD: Flaviviru 39.0 1.1E+02 0.0024 30.1 7.1 83 22-106 32-136 (148)
251 PF02254 TrkA_N: TrkA-N domain 38.9 2.8E+02 0.006 24.6 10.3 92 23-124 21-115 (116)
252 PRK08007 para-aminobenzoate sy 38.9 35 0.00077 34.0 3.9 89 26-122 2-94 (187)
253 PRK05848 nicotinate-nucleotide 38.8 2.8E+02 0.006 29.9 10.7 91 26-124 155-256 (273)
254 TIGR01305 GMP_reduct_1 guanosi 38.5 1.3E+02 0.0028 33.5 8.3 58 68-125 120-178 (343)
255 cd08185 Fe-ADH1 Iron-containin 38.4 1.6E+02 0.0035 32.6 9.3 64 23-91 25-102 (380)
256 cd00331 IGPS Indole-3-glycerol 38.4 1.3E+02 0.0029 30.3 8.0 57 83-139 59-117 (217)
257 PRK12723 flagellar biosynthesi 38.4 3.7E+02 0.008 30.4 12.1 92 22-115 205-306 (388)
258 PRK07114 keto-hydroxyglutarate 38.3 3.2E+02 0.0069 28.6 10.8 84 49-134 19-106 (222)
259 TIGR02855 spore_yabG sporulati 38.2 2.6E+02 0.0055 30.4 10.1 99 20-120 101-221 (283)
260 PRK14075 pnk inorganic polypho 38.0 2.5E+02 0.0054 29.7 10.2 92 24-142 1-94 (256)
261 PF04131 NanE: Putative N-acet 37.8 82 0.0018 32.3 6.2 68 47-121 45-115 (192)
262 PRK13609 diacylglycerol glucos 37.7 4.9E+02 0.011 28.1 12.8 105 23-141 230-337 (380)
263 PRK15490 Vi polysaccharide bio 37.7 5.5E+02 0.012 30.8 13.7 102 24-137 430-533 (578)
264 PRK14329 (dimethylallyl)adenos 37.6 3.2E+02 0.007 31.4 11.8 106 21-140 21-139 (467)
265 PRK09140 2-dehydro-3-deoxy-6-p 37.6 2.4E+02 0.0053 28.8 9.7 82 52-135 17-99 (206)
266 TIGR00735 hisF imidazoleglycer 37.4 3.1E+02 0.0067 28.6 10.7 52 85-136 188-246 (254)
267 COG4262 Predicted spermidine s 37.2 1E+02 0.0022 34.9 7.3 66 17-84 307-380 (508)
268 PRK03372 ppnK inorganic polyph 37.2 2.9E+02 0.0063 30.2 10.8 101 24-143 6-129 (306)
269 cd05014 SIS_Kpsf KpsF-like pro 37.2 2.1E+02 0.0046 25.8 8.5 91 31-129 10-102 (128)
270 PRK03378 ppnK inorganic polyph 36.9 1.3E+02 0.0028 32.6 7.9 99 25-142 7-119 (292)
271 cd04949 GT1_gtfA_like This fam 36.8 3.1E+02 0.0068 29.1 11.0 57 81-142 289-345 (372)
272 TIGR01163 rpe ribulose-phospha 36.8 1.2E+02 0.0026 30.0 7.3 81 41-125 98-193 (210)
273 PRK05637 anthranilate synthase 36.8 55 0.0012 33.5 4.9 77 24-104 2-81 (208)
274 PRK14949 DNA polymerase III su 36.7 87 0.0019 39.2 7.3 73 69-143 119-194 (944)
275 PRK09490 metH B12-dependent me 36.6 2.1E+02 0.0047 37.1 10.9 102 24-127 752-866 (1229)
276 TIGR02082 metH 5-methyltetrahy 36.6 2.5E+02 0.0055 36.3 11.5 103 24-128 733-848 (1178)
277 PRK07695 transcriptional regul 36.4 3E+02 0.0066 27.4 10.1 67 52-122 101-174 (201)
278 cd08181 PPD-like 1,3-propanedi 36.3 2.7E+02 0.0059 30.6 10.6 64 23-91 25-102 (357)
279 TIGR02149 glgA_Coryne glycogen 36.2 4.9E+02 0.011 27.7 12.4 108 23-141 229-351 (388)
280 PRK13125 trpA tryptophan synth 36.2 1.3E+02 0.0027 31.4 7.6 54 86-139 64-125 (244)
281 PF13941 MutL: MutL protein 36.1 7.5E+02 0.016 28.7 14.4 119 22-142 75-209 (457)
282 TIGR00417 speE spermidine synt 36.0 2.2E+02 0.0047 30.0 9.4 56 23-81 96-157 (270)
283 cd03825 GT1_wcfI_like This fam 35.9 1E+02 0.0023 32.0 7.0 75 24-102 1-82 (365)
284 PF01081 Aldolase: KDPG and KH 35.9 84 0.0018 32.2 6.0 60 74-134 36-95 (196)
285 PRK13125 trpA tryptophan synth 35.7 4.1E+02 0.0089 27.6 11.3 89 35-126 117-215 (244)
286 COG0421 SpeE Spermidine syntha 35.7 1.7E+02 0.0037 31.6 8.7 70 21-92 98-177 (282)
287 cd03806 GT1_ALG11_like This fa 35.6 4.5E+02 0.0097 29.4 12.3 107 23-141 273-391 (419)
288 PRK10060 RNase II stability mo 35.5 3E+02 0.0065 32.8 11.5 100 36-138 543-656 (663)
289 cd00452 KDPG_aldolase KDPG and 35.5 2.9E+02 0.0063 27.4 9.8 77 43-125 93-171 (190)
290 cd08194 Fe-ADH6 Iron-containin 35.1 2.6E+02 0.0056 31.0 10.2 63 24-91 24-99 (375)
291 KOG1467 Translation initiation 34.7 1.2E+02 0.0027 35.2 7.6 78 22-105 384-470 (556)
292 PRK09288 purT phosphoribosylgl 34.7 5.1E+02 0.011 28.3 12.5 34 20-54 9-42 (395)
293 PRK00654 glgA glycogen synthas 34.7 4.7E+02 0.01 29.6 12.4 108 23-141 311-427 (466)
294 COG0626 MetC Cystathionine bet 34.7 2.6E+02 0.0055 31.8 10.1 99 22-123 101-205 (396)
295 cd05844 GT1_like_7 Glycosyltra 34.7 5.6E+02 0.012 26.8 13.1 107 24-141 220-335 (367)
296 PRK05670 anthranilate synthase 34.7 50 0.0011 32.8 4.2 87 26-120 2-92 (189)
297 PF03808 Glyco_tran_WecB: Glyc 34.5 3E+02 0.0066 27.1 9.6 75 22-100 47-130 (172)
298 cd03799 GT1_amsK_like This is 34.3 4.5E+02 0.0097 27.1 11.4 66 70-141 256-326 (355)
299 PRK13585 1-(5-phosphoribosyl)- 34.3 5E+02 0.011 26.5 11.6 78 55-134 150-237 (241)
300 PF02581 TMP-TENI: Thiamine mo 34.3 2.3E+02 0.0049 27.9 8.7 69 51-123 100-175 (180)
301 PRK07428 nicotinate-nucleotide 34.2 1.9E+02 0.0041 31.4 8.6 95 26-124 169-270 (288)
302 TIGR00736 nifR3_rel_arch TIM-b 34.1 4.1E+02 0.0088 27.9 10.9 94 28-124 116-219 (231)
303 PF03102 NeuB: NeuB family; I 34.1 1.2E+02 0.0025 32.1 6.9 94 36-134 58-161 (241)
304 PRK10416 signal recognition pa 33.9 3.4E+02 0.0073 29.7 10.7 56 21-78 140-205 (318)
305 cd00167 SANT 'SWI3, ADA2, N-Co 33.7 1.2E+02 0.0025 21.8 5.1 43 216-262 1-43 (45)
306 PLN02819 lysine-ketoglutarate 33.7 4.1E+02 0.0089 34.0 12.5 111 23-139 569-692 (1042)
307 PF01564 Spermine_synth: Sperm 33.5 72 0.0016 33.4 5.3 65 17-84 94-165 (246)
308 cd04951 GT1_WbdM_like This fam 33.5 3.4E+02 0.0074 28.1 10.4 105 23-141 219-325 (360)
309 PRK02083 imidazole glycerol ph 33.4 3.5E+02 0.0075 28.1 10.4 68 69-136 166-244 (253)
310 PF00977 His_biosynth: Histidi 33.4 1.4E+02 0.0031 30.8 7.4 69 55-124 148-219 (229)
311 cd04740 DHOD_1B_like Dihydroor 33.1 6.1E+02 0.013 26.8 12.8 58 85-142 220-283 (296)
312 PRK07764 DNA polymerase III su 33.0 1.2E+02 0.0027 37.4 7.9 75 68-144 119-196 (824)
313 PF05582 Peptidase_U57: YabG p 32.9 2.8E+02 0.0061 30.2 9.5 101 18-120 100-222 (287)
314 PRK09860 putative alcohol dehy 32.9 2.6E+02 0.0056 31.2 9.8 63 24-91 32-107 (383)
315 CHL00101 trpG anthranilate syn 32.8 55 0.0012 32.7 4.1 76 25-104 1-80 (190)
316 COG1748 LYS9 Saccharopine dehy 32.7 2.8E+02 0.0061 31.5 10.0 92 24-120 2-94 (389)
317 PRK09496 trkA potassium transp 32.5 3E+02 0.0065 30.7 10.3 95 23-123 23-122 (453)
318 PRK14722 flhF flagellar biosyn 32.4 3.1E+02 0.0067 30.9 10.2 87 24-111 168-262 (374)
319 TIGR03704 PrmC_rel_meth putati 32.4 4.1E+02 0.0089 27.8 10.7 52 23-77 110-161 (251)
320 PLN02335 anthranilate synthase 32.3 54 0.0012 33.8 4.1 90 23-120 18-111 (222)
321 PF04131 NanE: Putative N-acet 32.3 3.6E+02 0.0079 27.8 9.8 98 23-125 64-173 (192)
322 PRK13170 hisH imidazole glycer 32.3 1.1E+02 0.0024 30.8 6.2 44 24-75 1-44 (196)
323 PRK07028 bifunctional hexulose 32.1 7.1E+02 0.015 28.1 13.2 102 38-142 98-212 (430)
324 PRK06543 nicotinate-nucleotide 32.1 6.5E+02 0.014 27.4 12.2 91 25-122 161-262 (281)
325 TIGR00511 ribulose_e2b2 ribose 32.0 1.9E+02 0.004 31.5 8.3 78 23-105 141-226 (301)
326 cd08170 GlyDH Glycerol dehydro 32.0 2.3E+02 0.0051 30.9 9.2 77 23-104 22-109 (351)
327 cd03808 GT1_cap1E_like This fa 31.9 4.4E+02 0.0095 26.5 10.6 53 83-141 276-328 (359)
328 cd08171 GlyDH-like2 Glycerol d 31.9 2.3E+02 0.005 30.9 9.1 77 23-104 22-110 (345)
329 cd00429 RPE Ribulose-5-phospha 31.8 1.5E+02 0.0032 29.3 7.0 55 70-125 128-194 (211)
330 PRK02290 3-dehydroquinate synt 31.8 3.1E+02 0.0067 30.7 9.8 69 70-140 89-159 (344)
331 PF00290 Trp_syntA: Tryptophan 31.6 82 0.0018 33.6 5.3 54 84-137 74-134 (259)
332 cd02911 arch_FMN Archeal FMN-b 31.6 6.1E+02 0.013 26.4 11.9 91 29-124 122-219 (233)
333 PHA02518 ParA-like protein; Pr 31.6 1E+02 0.0022 30.2 5.8 93 23-117 29-122 (211)
334 PRK14723 flhF flagellar biosyn 31.4 3.3E+02 0.0071 33.7 10.9 102 24-128 216-334 (767)
335 TIGR03499 FlhF flagellar biosy 31.4 1.4E+02 0.003 31.9 7.1 53 24-77 225-280 (282)
336 TIGR01859 fruc_bis_ald_ fructo 31.4 2.9E+02 0.0062 29.8 9.5 82 53-141 152-242 (282)
337 PF03328 HpcH_HpaI: HpcH/HpaI 31.3 4E+02 0.0086 27.0 10.2 84 54-139 8-106 (221)
338 cd03804 GT1_wbaZ_like This fam 31.2 4.1E+02 0.0089 28.0 10.7 103 24-142 222-326 (351)
339 cd04731 HisF The cyclase subun 31.1 2.3E+02 0.005 29.1 8.5 71 53-125 26-100 (243)
340 PRK03522 rumB 23S rRNA methylu 31.1 2.8E+02 0.006 29.9 9.4 77 23-105 195-275 (315)
341 TIGR00734 hisAF_rel hisA/hisF 31.1 2.4E+02 0.0053 29.0 8.6 67 56-124 143-212 (221)
342 KOG0850 Transcription factor D 31.0 81 0.0018 33.3 5.0 64 202-271 114-181 (245)
343 PRK08535 translation initiatio 31.0 2.1E+02 0.0046 31.1 8.5 78 23-105 146-231 (310)
344 PRK01581 speE spermidine synth 31.0 2.7E+02 0.0058 31.5 9.3 58 20-80 171-237 (374)
345 TIGR03128 RuMP_HxlA 3-hexulose 30.8 5.4E+02 0.012 25.5 12.0 86 36-124 91-185 (206)
346 TIGR03061 pip_yhgE_Nterm YhgE/ 30.8 1.1E+02 0.0025 29.5 5.9 52 21-75 41-102 (164)
347 COG0118 HisH Glutamine amidotr 30.7 1.2E+02 0.0026 31.5 6.1 37 24-60 2-38 (204)
348 cd04733 OYE_like_2_FMN Old yel 30.7 3.6E+02 0.0077 29.4 10.3 40 85-124 281-320 (338)
349 PF02882 THF_DHG_CYH_C: Tetrah 30.7 75 0.0016 31.5 4.6 59 21-82 34-92 (160)
350 PRK12727 flagellar biosynthesi 30.6 3.5E+02 0.0076 32.2 10.6 55 23-78 380-437 (559)
351 cd08176 LPO Lactadehyde:propan 30.3 3.3E+02 0.0071 30.2 10.0 63 24-91 29-104 (377)
352 PRK00726 murG undecaprenyldiph 29.9 7E+02 0.015 26.5 13.1 54 85-141 263-323 (357)
353 PRK07807 inosine 5-monophospha 29.7 2.6E+02 0.0056 32.5 9.3 102 22-126 238-360 (479)
354 PRK03612 spermidine synthase; 29.6 3.3E+02 0.0071 31.8 10.3 59 20-81 318-385 (521)
355 PRK11036 putative S-adenosyl-L 29.6 4.7E+02 0.01 27.0 10.5 67 22-91 65-135 (255)
356 PRK09016 quinolinate phosphori 29.6 2.9E+02 0.0064 30.2 9.2 91 26-123 182-278 (296)
357 cd03316 MR_like Mandelate race 29.6 2.7E+02 0.0059 30.2 9.1 46 85-130 229-275 (357)
358 PRK05581 ribulose-phosphate 3- 29.5 2.5E+02 0.0053 28.1 8.2 56 70-125 132-198 (220)
359 TIGR01305 GMP_reduct_1 guanosi 29.5 3.5E+02 0.0077 30.2 9.8 100 23-125 121-241 (343)
360 PRK06096 molybdenum transport 29.5 2.1E+02 0.0045 31.1 8.0 69 51-123 194-262 (284)
361 cd02801 DUS_like_FMN Dihydrour 29.4 5.7E+02 0.012 25.7 10.9 90 31-122 107-210 (231)
362 PRK04128 1-(5-phosphoribosyl)- 29.3 4.7E+02 0.01 27.1 10.4 69 54-125 30-102 (228)
363 TIGR00696 wecB_tagA_cpsF bacte 29.3 2.5E+02 0.0055 28.1 8.1 62 22-85 47-116 (177)
364 PRK00025 lpxB lipid-A-disaccha 29.2 6.9E+02 0.015 26.8 12.2 22 120-141 319-340 (380)
365 cd08551 Fe-ADH iron-containing 29.1 2.9E+02 0.0064 30.3 9.4 63 24-91 24-99 (370)
366 cd01743 GATase1_Anthranilate_S 29.0 1.3E+02 0.0028 29.6 5.9 75 26-104 1-79 (184)
367 TIGR02990 ectoine_eutA ectoine 28.9 2.5E+02 0.0055 29.5 8.4 74 25-100 122-210 (239)
368 PLN00191 enolase 28.9 4.2E+02 0.0091 30.7 10.7 109 29-138 239-380 (457)
369 TIGR01163 rpe ribulose-phospha 28.8 4.9E+02 0.011 25.7 10.1 53 83-136 43-97 (210)
370 cd08174 G1PDH-like Glycerol-1- 28.7 3.2E+02 0.007 29.6 9.5 77 23-104 25-107 (331)
371 cd03812 GT1_CapH_like This fam 28.7 5.6E+02 0.012 26.6 11.1 65 70-142 267-331 (358)
372 cd03811 GT1_WabH_like This fam 28.6 6E+02 0.013 25.4 11.2 64 70-140 264-327 (353)
373 PRK09189 uroporphyrinogen-III 28.6 4.2E+02 0.0091 27.0 9.9 101 24-137 1-112 (240)
374 PF06283 ThuA: Trehalose utili 28.4 1.1E+02 0.0024 30.8 5.6 74 25-103 1-88 (217)
375 PF04309 G3P_antiterm: Glycero 28.4 77 0.0017 32.0 4.2 60 57-122 107-166 (175)
376 TIGR01823 PabB-fungal aminodeo 28.3 1.8E+02 0.004 35.5 8.2 93 20-120 2-106 (742)
377 PRK14191 bifunctional 5,10-met 28.2 1.6E+02 0.0034 32.1 6.8 62 22-86 156-217 (285)
378 PF07279 DUF1442: Protein of u 28.1 2.9E+02 0.0063 29.0 8.4 73 23-101 69-146 (218)
379 TIGR00737 nifR3_yhdG putative 28.0 5.4E+02 0.012 27.7 11.0 94 29-124 113-221 (319)
380 PRK00771 signal recognition pa 28.0 5.9E+02 0.013 29.3 11.7 55 23-78 123-184 (437)
381 KOG1562 Spermidine synthase [A 27.9 2E+02 0.0044 31.7 7.5 63 25-89 147-215 (337)
382 PRK08649 inosine 5-monophospha 27.9 7.8E+02 0.017 27.6 12.4 67 55-125 142-215 (368)
383 TIGR01815 TrpE-clade3 anthrani 27.9 1.4E+02 0.0031 36.3 7.1 79 22-104 515-596 (717)
384 COG3010 NanE Putative N-acetyl 27.9 5E+02 0.011 27.4 9.9 113 23-139 98-225 (229)
385 PRK00077 eno enolase; Provisio 27.8 4E+02 0.0087 30.3 10.3 108 29-139 212-349 (425)
386 cd02930 DCR_FMN 2,4-dienoyl-Co 27.7 3.5E+02 0.0075 29.8 9.6 39 85-123 265-303 (353)
387 PRK00994 F420-dependent methyl 27.6 3E+02 0.0064 29.5 8.4 81 45-128 29-118 (277)
388 TIGR01425 SRP54_euk signal rec 27.6 3.7E+02 0.0081 30.9 10.0 54 23-78 128-191 (429)
389 PRK15128 23S rRNA m(5)C1962 me 27.5 2.1E+02 0.0045 32.3 7.9 54 24-77 244-301 (396)
390 PRK10909 rsmD 16S rRNA m(2)G96 27.3 4.4E+02 0.0096 26.8 9.6 77 24-105 77-160 (199)
391 PF10237 N6-adenineMlase: Prob 27.3 1.6E+02 0.0036 29.2 6.3 72 53-124 70-144 (162)
392 TIGR02095 glgA glycogen/starch 27.2 6.9E+02 0.015 28.1 12.1 107 24-141 321-436 (473)
393 cd00532 MGS-like MGS-like doma 27.1 1.4E+02 0.003 27.3 5.4 23 30-52 8-30 (112)
394 TIGR01302 IMP_dehydrog inosine 27.0 2.2E+02 0.0048 32.6 8.1 55 68-123 235-291 (450)
395 PLN02316 synthase/transferase 26.9 7E+02 0.015 32.0 12.9 113 23-141 869-997 (1036)
396 TIGR01133 murG undecaprenyldip 26.8 7.5E+02 0.016 25.9 12.7 55 85-141 261-320 (348)
397 PRK13111 trpA tryptophan synth 26.8 7.9E+02 0.017 26.1 12.1 98 26-126 121-229 (258)
398 KOG4175 Tryptophan synthase al 26.7 1.1E+02 0.0024 31.8 5.1 39 95-133 94-138 (268)
399 PF00448 SRP54: SRP54-type pro 26.7 3.4E+02 0.0073 27.4 8.6 114 23-140 29-164 (196)
400 PF00497 SBP_bac_3: Bacterial 26.6 2.3E+02 0.0049 27.1 7.1 52 22-77 109-160 (225)
401 cd08186 Fe-ADH8 Iron-containin 26.6 3.3E+02 0.0072 30.2 9.3 63 24-91 27-103 (383)
402 cd03795 GT1_like_4 This family 26.5 5.8E+02 0.013 26.3 10.7 108 23-141 218-331 (357)
403 cd08182 HEPD Hydroxyethylphosp 26.5 3.1E+02 0.0068 30.1 9.0 63 24-91 24-96 (367)
404 cd05565 PTS_IIB_lactose PTS_II 26.4 2.8E+02 0.006 25.4 7.1 65 33-103 14-79 (99)
405 TIGR00138 gidB 16S rRNA methyl 26.4 6.4E+02 0.014 25.0 11.0 50 23-77 66-117 (181)
406 PLN02275 transferase, transfer 26.3 7.7E+02 0.017 26.8 12.0 104 23-139 261-370 (371)
407 TIGR03365 Bsubt_queE 7-cyano-7 26.2 5.8E+02 0.013 26.5 10.4 100 25-129 75-187 (238)
408 PRK15454 ethanol dehydrogenase 26.2 2.8E+02 0.0061 31.1 8.7 63 24-91 50-125 (395)
409 cd04726 KGPDC_HPS 3-Keto-L-gul 26.0 2.1E+02 0.0047 28.1 7.0 56 83-138 39-98 (202)
410 PRK11829 biofilm formation reg 25.9 5.3E+02 0.011 30.3 11.3 100 36-136 541-652 (660)
411 TIGR00959 ffh signal recogniti 25.8 6.1E+02 0.013 29.1 11.3 55 22-78 127-191 (428)
412 cd08178 AAD_C C-terminal alcoh 25.8 3.3E+02 0.0071 30.5 9.1 63 24-91 22-97 (398)
413 TIGR01579 MiaB-like-C MiaB-lik 25.7 4.6E+02 0.01 29.3 10.3 94 32-139 9-107 (414)
414 cd04731 HisF The cyclase subun 25.6 3.4E+02 0.0075 27.8 8.6 56 69-124 162-222 (243)
415 PRK07107 inosine 5-monophospha 25.5 2.7E+02 0.0059 32.5 8.6 30 96-125 352-381 (502)
416 TIGR00479 rumA 23S rRNA (uraci 25.4 7.5E+02 0.016 27.8 11.9 80 24-104 315-396 (431)
417 TIGR00735 hisF imidazoleglycer 25.0 4.2E+02 0.0091 27.7 9.2 71 54-125 30-103 (254)
418 PF02887 PK_C: Pyruvate kinase 25.0 2.6E+02 0.0057 25.5 6.9 62 70-136 17-80 (117)
419 TIGR01306 GMP_reduct_2 guanosi 25.0 2.1E+02 0.0046 31.6 7.2 56 70-125 109-165 (321)
420 PRK10624 L-1,2-propanediol oxi 25.0 3.3E+02 0.007 30.3 8.8 63 24-91 31-106 (382)
421 PRK13849 putative crown gall t 24.9 1.7E+02 0.0037 30.3 6.2 13 22-34 29-41 (231)
422 TIGR02470 sucr_synth sucrose s 24.8 1.1E+03 0.023 29.5 13.6 65 71-142 645-709 (784)
423 PRK10415 tRNA-dihydrouridine s 24.8 5.4E+02 0.012 28.0 10.3 95 28-124 114-223 (321)
424 PRK09283 delta-aminolevulinic 24.7 1.2E+02 0.0026 33.4 5.2 64 55-121 226-290 (323)
425 PRK04128 1-(5-phosphoribosyl)- 24.7 3E+02 0.0066 28.5 8.0 65 56-124 145-210 (228)
426 PF00465 Fe-ADH: Iron-containi 24.7 1.5E+02 0.0033 32.5 6.1 63 23-91 22-97 (366)
427 TIGR00434 cysH phosophoadenyly 24.7 3.1E+02 0.0068 27.6 8.0 71 37-107 3-77 (212)
428 cd03802 GT1_AviGT4_like This f 24.6 7.7E+02 0.017 25.2 12.7 63 70-140 244-306 (335)
429 cd01573 modD_like ModD; Quinol 24.6 4E+02 0.0087 28.5 9.1 93 26-124 155-257 (272)
430 PLN02716 nicotinate-nucleotide 24.6 4.8E+02 0.011 28.7 9.7 97 26-122 173-287 (308)
431 cd02803 OYE_like_FMN_family Ol 24.5 5.4E+02 0.012 27.5 10.2 41 83-123 268-308 (327)
432 PLN02366 spermidine synthase 24.4 2.8E+02 0.0061 30.2 8.0 61 19-81 111-177 (308)
433 PRK14024 phosphoribosyl isomer 24.3 6.3E+02 0.014 26.2 10.3 78 57-135 149-238 (241)
434 PRK05282 (alpha)-aspartyl dipe 24.3 3.8E+02 0.0083 28.1 8.7 61 23-91 31-97 (233)
435 PLN02889 oxo-acid-lyase/anthra 24.2 2E+02 0.0044 36.1 7.6 94 23-120 81-182 (918)
436 COG0159 TrpA Tryptophan syntha 24.0 2.4E+02 0.0052 30.4 7.2 58 85-142 82-146 (265)
437 PRK10586 putative oxidoreducta 23.8 5.7E+02 0.012 28.4 10.4 78 24-104 35-118 (362)
438 PRK14099 glycogen synthase; Pr 23.8 7.7E+02 0.017 28.3 11.8 22 119-140 421-442 (485)
439 COG3836 HpcH 2,4-dihydroxyhept 23.7 6.2E+02 0.013 27.2 9.9 97 38-137 7-109 (255)
440 TIGR01304 IMP_DH_rel_2 IMP deh 23.7 4.2E+02 0.0092 29.8 9.3 100 22-124 154-283 (369)
441 PRK02649 ppnK inorganic polyph 23.6 3.1E+02 0.0067 29.9 8.1 100 25-143 3-125 (305)
442 PRK06978 nicotinate-nucleotide 23.6 6.4E+02 0.014 27.6 10.4 91 25-122 178-274 (294)
443 CHL00200 trpA tryptophan synth 23.6 3.3E+02 0.0071 29.1 8.1 102 23-127 119-233 (263)
444 PRK13523 NADPH dehydrogenase N 23.6 4.1E+02 0.0088 29.3 9.1 39 85-123 264-302 (337)
445 cd04724 Tryptophan_synthase_al 23.5 5E+02 0.011 27.1 9.4 98 26-126 108-216 (242)
446 PRK02645 ppnK inorganic polyph 23.4 4.5E+02 0.0099 28.5 9.4 100 25-142 5-115 (305)
447 KOG3040 Predicted sugar phosph 23.4 86 0.0019 32.9 3.6 63 24-86 40-106 (262)
448 PRK13561 putative diguanylate 23.4 5.7E+02 0.012 30.0 11.0 98 35-135 535-646 (651)
449 PRK13789 phosphoribosylamine-- 23.2 8.7E+02 0.019 27.5 11.9 117 23-142 4-178 (426)
450 PRK06559 nicotinate-nucleotide 23.2 6.7E+02 0.015 27.4 10.5 91 25-122 169-266 (290)
451 cd06338 PBP1_ABC_ligand_bindin 23.2 8.8E+02 0.019 25.4 12.5 65 36-104 158-230 (345)
452 PRK00377 cbiT cobalt-precorrin 23.2 5.9E+02 0.013 25.2 9.6 54 21-77 63-119 (198)
453 COG2247 LytB Putative cell wal 23.2 3.5E+02 0.0075 30.1 8.2 30 25-54 78-107 (337)
454 cd03807 GT1_WbnK_like This fam 23.2 7.8E+02 0.017 24.8 11.2 64 70-142 269-332 (365)
455 PF10672 Methyltrans_SAM: S-ad 23.1 3E+02 0.0065 29.8 7.8 53 24-77 147-203 (286)
456 cd00405 PRAI Phosphoribosylant 23.1 4.3E+02 0.0094 26.4 8.6 52 68-122 119-178 (203)
457 cd03115 SRP The signal recogni 23.0 4.3E+02 0.0092 25.3 8.3 54 23-78 28-91 (173)
458 PRK01033 imidazole glycerol ph 23.0 4.1E+02 0.0089 27.9 8.7 68 56-124 154-225 (258)
459 cd04737 LOX_like_FMN L-Lactate 23.0 6.2E+02 0.013 28.3 10.4 86 37-125 211-305 (351)
460 PRK02090 phosphoadenosine phos 23.0 3.3E+02 0.0072 28.2 8.0 73 35-107 28-104 (241)
461 PRK14178 bifunctional 5,10-met 22.9 1.7E+02 0.0036 31.7 5.8 56 22-80 151-206 (279)
462 cd08183 Fe-ADH2 Iron-containin 22.8 4.1E+02 0.0088 29.4 9.1 64 23-91 22-94 (374)
463 TIGR03569 NeuB_NnaB N-acetylne 22.7 3.7E+02 0.008 29.8 8.5 94 35-133 77-182 (329)
464 PRK08649 inosine 5-monophospha 22.6 3.8E+02 0.0083 30.1 8.8 100 22-125 153-285 (368)
465 PRK13146 hisH imidazole glycer 22.6 1.9E+02 0.0042 29.4 6.0 44 24-75 2-47 (209)
466 cd08549 G1PDH_related Glycerol 22.4 4.9E+02 0.011 28.3 9.5 74 24-103 25-111 (332)
467 cd01080 NAD_bind_m-THF_DH_Cycl 22.4 3E+02 0.0065 27.3 7.1 57 21-81 42-99 (168)
468 PRK07994 DNA polymerase III su 22.4 1.9E+02 0.0042 34.9 6.7 74 69-144 119-195 (647)
469 COG3959 Transketolase, N-termi 22.3 1.3E+02 0.0029 31.8 4.7 53 26-78 174-241 (243)
470 PRK09522 bifunctional glutamin 22.3 1.3E+02 0.0028 35.3 5.2 77 24-104 2-85 (531)
471 TIGR02638 lactal_redase lactal 22.2 4.3E+02 0.0094 29.3 9.1 63 24-91 30-105 (379)
472 PRK05458 guanosine 5'-monophos 22.1 4.4E+02 0.0095 29.2 9.0 53 70-123 112-166 (326)
473 PRK14114 1-(5-phosphoribosyl)- 22.1 3.4E+02 0.0074 28.5 7.9 68 56-124 146-222 (241)
474 TIGR00853 pts-lac PTS system, 22.1 2.6E+02 0.0056 25.1 6.0 76 24-104 4-83 (95)
475 cd02929 TMADH_HD_FMN Trimethyl 22.0 5.3E+02 0.011 28.7 9.7 39 85-123 278-316 (370)
476 PRK14960 DNA polymerase III su 22.0 2.5E+02 0.0054 34.3 7.5 74 69-144 118-194 (702)
477 PLN02274 inosine-5'-monophosph 21.9 2.8E+02 0.006 32.4 7.8 66 56-124 249-316 (505)
478 PRK11572 copper homeostasis pr 21.9 5E+02 0.011 27.7 9.0 91 31-123 98-196 (248)
479 PRK04539 ppnK inorganic polyph 21.8 5.5E+02 0.012 27.9 9.5 100 24-142 6-124 (296)
480 cd02932 OYE_YqiM_FMN Old yello 21.8 7.5E+02 0.016 26.9 10.7 39 85-123 279-317 (336)
481 PRK06372 translation initiatio 21.7 3.8E+02 0.0082 28.7 8.1 77 24-105 110-194 (253)
482 PRK10867 signal recognition pa 21.7 7.4E+02 0.016 28.5 11.0 54 23-78 129-192 (433)
483 cd02810 DHOD_DHPD_FMN Dihydroo 21.7 6.7E+02 0.015 26.3 10.1 38 85-122 230-269 (289)
484 PRK01362 putative translaldola 21.7 6.3E+02 0.014 26.2 9.6 81 42-125 96-185 (214)
485 PRK03604 moaC bifunctional mol 21.6 3.4E+02 0.0075 29.8 8.0 63 14-76 146-222 (312)
486 cd08175 G1PDH Glycerol-1-phosp 21.5 5.5E+02 0.012 28.0 9.7 76 24-105 24-113 (348)
487 PRK06512 thiamine-phosphate py 21.5 6.7E+02 0.014 25.9 9.8 66 54-123 119-190 (221)
488 COG0673 MviM Predicted dehydro 21.5 9.2E+02 0.02 25.4 11.2 105 23-140 3-115 (342)
489 PRK02228 V-type ATP synthase s 21.5 5E+02 0.011 23.5 7.8 66 22-91 18-89 (100)
490 PRK01185 ppnK inorganic polyph 21.4 6.9E+02 0.015 26.8 10.1 98 24-142 1-105 (271)
491 PLN02935 Bifunctional NADH kin 21.4 7.1E+02 0.015 29.4 10.7 99 25-142 196-318 (508)
492 PRK09423 gldA glycerol dehydro 21.4 4.9E+02 0.011 28.7 9.3 75 24-103 30-115 (366)
493 PF01008 IF-2B: Initiation fac 21.4 1.2E+02 0.0027 31.9 4.5 79 23-105 133-219 (282)
494 COG0190 FolD 5,10-methylene-te 21.3 1.4E+02 0.0029 32.5 4.7 59 21-82 154-212 (283)
495 cd06296 PBP1_CatR_like Ligand- 21.3 4.9E+02 0.011 26.0 8.7 64 35-104 17-86 (270)
496 PLN02617 imidazole glycerol ph 21.3 5.8E+02 0.013 30.2 10.2 68 70-137 453-530 (538)
497 PRK10446 ribosomal protein S6 21.3 1.3E+02 0.0028 32.0 4.7 55 24-78 1-66 (300)
498 PRK05286 dihydroorotate dehydr 21.2 6.6E+02 0.014 27.6 10.2 55 87-141 278-341 (344)
499 PRK05567 inosine 5'-monophosph 21.2 3.4E+02 0.0074 31.4 8.3 64 57-123 230-295 (486)
500 PRK10481 hypothetical protein; 21.0 5.3E+02 0.011 27.1 8.9 79 20-101 126-211 (224)
No 1
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.90 E-value=7.6e-24 Score=221.94 Aligned_cols=66 Identities=58% Similarity=0.913 Sum_probs=62.9
Q ss_pred CccCCCCccccchhhHHHHHHHHHHhcCCCCChhhHHhhcCCCCCcHHHHHHhhhhhHhhhcccCC
Q 005719 207 STTQKKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFRLYLKRLSN 272 (681)
Q Consensus 207 ~s~~kk~r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~v~glt~~~v~ShLqkyr~~l~~~~~ 272 (681)
....||+|++||+|||+|||+||++||.+||+||+||++|||+||||+||||||||||+|+||+..
T Consensus 230 ~~g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~ 295 (526)
T PLN03162 230 APGKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAA 295 (526)
T ss_pred CCCCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccc
Confidence 355899999999999999999999999999999999999999999999999999999999998765
No 2
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.82 E-value=1.5e-19 Score=184.74 Aligned_cols=118 Identities=36% Similarity=0.579 Sum_probs=111.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL--EMDLPVIM 101 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~--~~dlPVIm 101 (681)
++|||||||+..+..|...|+..||+|..+.++.+|++.+.. . ||+||+|+.||++||+++++.|+. ....||||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~-~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~ 77 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE--Q-PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIV 77 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--C-CCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEE
Confidence 589999999999999999999999999999999999999874 3 999999999999999999999983 36789999
Q ss_pred EEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 102 LSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
+|+.++......+++.||+||+.|||.++||..+++.++|+..
T Consensus 78 Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~ 120 (229)
T COG0745 78 LTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNA 120 (229)
T ss_pred EECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCc
Confidence 9999999999999999999999999999999999999998764
No 3
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.75 E-value=1.2e-18 Score=141.79 Aligned_cols=55 Identities=65% Similarity=1.051 Sum_probs=53.0
Q ss_pred CCccccchhhHHHHHHHHHHhcC-CCCChhhHHhhcCCCCCcHHHHHHhhhhhHhh
Q 005719 212 KPRVVWTPELHRKFVGAVNQLGV-DKAVPKKILDLMNVEGLTRENVASHLQKFRLY 266 (681)
Q Consensus 212 k~r~~Wt~eLh~~F~~av~~lG~-~ka~Pk~il~~m~v~glt~~~v~ShLqkyr~~ 266 (681)
|+|+.||+|+|++|++||+++|. +.|+||+|+++|++++||+++|+|||||||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 68999999999999999999997 89999999999999999999999999999973
No 4
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.73 E-value=4e-17 Score=180.82 Aligned_cols=119 Identities=38% Similarity=0.652 Sum_probs=112.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVIML 102 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVImL 102 (681)
.+|||||||+.+|..+..+|+..||.|.++.++.+|++.+... .||+||+|+.||+|||+++++.+. ..+++|||+|
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~--~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~ 82 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES--PFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVM 82 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEE
Confidence 4799999999999999999999999999999999999999865 599999999999999999999994 5689999999
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 103 SAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
|++.+.+.+.+|++.||.|||.|||+.+.|..++.+++..++
T Consensus 83 Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~ 124 (464)
T COG2204 83 TGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRE 124 (464)
T ss_pred eCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999987543
No 5
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.73 E-value=3e-17 Score=181.78 Aligned_cols=118 Identities=33% Similarity=0.551 Sum_probs=108.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh--CCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRA--CQYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPV 99 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~--~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPV 99 (681)
.+||||||++.+|+.|+.++.+ +|++|+ +|.+|.+|++.+.+. .|||||+||.||+|||+++++.++ ..+++.+
T Consensus 2 ykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~--~pDiviTDI~MP~mdGLdLI~~ike~~p~~~~ 79 (475)
T COG4753 2 YKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQET--QPDIVITDINMPGMDGLDLIKAIKEQSPDTEF 79 (475)
T ss_pred eeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHhc--CCCEEEEecCCCCCcHHHHHHHHHHhCCCceE
Confidence 5899999999999999999854 688776 889999999999875 499999999999999999999995 5688999
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
|++|++++.+.+.+|++.|+.|||+||++.++|.+++.+++.+.
T Consensus 80 IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl 123 (475)
T COG4753 80 IILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKL 123 (475)
T ss_pred EEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987654
No 6
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.70 E-value=1.5e-16 Score=159.30 Aligned_cols=120 Identities=24% Similarity=0.484 Sum_probs=108.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRAC-QYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVI 100 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~-gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVI 100 (681)
++|||||||+.+.++-+.+++.. ||.++ ++.+..+|..++++.+ |||||+|+.||+.+|+++|..|+ ....+-||
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~--pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI 78 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFK--PDLILLDIYMPDGNGIELLPELRSQHYPVDVI 78 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhC--CCEEEEeeccCCCccHHHHHHHHhcCCCCCEE
Confidence 58999999999999999999886 77766 7889999999998654 79999999999999999999996 45678899
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhhc
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKV 145 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk~ 145 (681)
++|+..+.+.+.+|++.||.|||+|||..+.|..++.+..++++.
T Consensus 79 ~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~ 123 (224)
T COG4565 79 VITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHA 123 (224)
T ss_pred EEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988776643
No 7
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.70 E-value=3.8e-16 Score=137.67 Aligned_cols=110 Identities=37% Similarity=0.637 Sum_probs=103.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEEEEE
Q 005719 26 VLAVDDDPTCLKVLENFLRACQY-EVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVIMLS 103 (681)
Q Consensus 26 VLIVDDD~~~r~iL~~~Le~~gy-~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVImLS 103 (681)
||||||++..+..++.+|+..|| .|..+.++.++++.+.... ||+||+|+.||+++|+++++.|+ ..+.+|||++|
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t 78 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHP--PDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVT 78 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHST--ESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccC--ceEEEEEeeeccccccccccccccccccccEEEec
Confidence 79999999999999999999999 9999999999999998654 99999999999999999999995 44689999999
Q ss_pred cCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHH
Q 005719 104 AYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQ 137 (681)
Q Consensus 104 a~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q 137 (681)
...+.....++++.||++||.||++.++|.++++
T Consensus 79 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 79 DEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp SSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 9999999999999999999999999999998774
No 8
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.67 E-value=6e-16 Score=152.51 Aligned_cols=120 Identities=27% Similarity=0.421 Sum_probs=110.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVI 100 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVI 100 (681)
...-|.|||||..+|+.+..+|+..||+|..+.++.+.|.... ...+-++|+|+.||+|+|.++.+.+. ....+|||
T Consensus 3 ~~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~--~~~pGclllDvrMPg~sGlelq~~L~~~~~~~PVI 80 (202)
T COG4566 3 REPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAP--LDRPGCLLLDVRMPGMSGLELQDRLAERGIRLPVI 80 (202)
T ss_pred CCCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhcc--CCCCCeEEEecCCCCCchHHHHHHHHhcCCCCCEE
Confidence 4456899999999999999999999999999999999998853 34588999999999999999999984 56789999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
+||++.+.....+|++.||.|||.|||+..+|.+.+++++++.
T Consensus 81 fiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~ 123 (202)
T COG4566 81 FLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARD 123 (202)
T ss_pred EEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998754
No 9
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.64 E-value=9.3e-15 Score=131.87 Aligned_cols=120 Identities=38% Similarity=0.626 Sum_probs=104.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHH-HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCc
Q 005719 21 PIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAV-TALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE-MDLP 98 (681)
Q Consensus 21 P~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~-eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~-~dlP 98 (681)
..+.+||+|||++..+..++.+|...||.|..+.++. +|++.++..+ .||+|++|+.||++||+++++.++.. ..+|
T Consensus 3 ~~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-~~dlii~D~~mp~~~G~~~~~~l~~~~~~~p 81 (130)
T COG0784 3 LSGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-QPDLILLDINMPGMDGIELLRRLRARGPNIP 81 (130)
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhCCCCCC
Confidence 3568999999999999999999999999999999995 9999998541 49999999999999999999999765 6788
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEeCCCChHH-HHHHHHHHHH
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYLLKPVRIEE-LKNIWQHVIR 141 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eE-L~~i~q~Vlr 141 (681)
||++|+........+++..|+++|+.||+...+ |...+.+.+.
T Consensus 82 vv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 125 (130)
T COG0784 82 VILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA 125 (130)
T ss_pred EEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHH
Confidence 999999988877788899999999999977766 7777775543
No 10
>PLN03029 type-a response regulator protein; Provisional
Probab=99.63 E-value=7e-15 Score=149.05 Aligned_cols=122 Identities=30% Similarity=0.564 Sum_probs=109.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcC------------------CCceEEEEeCCCCCCC
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENR------------------NNFDLVISDVHMPDMD 83 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~------------------~~pDLVLlDV~MPdmD 83 (681)
..++||||||++..+..+..+|+..||.|.++.++.++++.+.... ..+|+||+|+.||+++
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 3489999999999999999999999999999999999999886432 1378999999999999
Q ss_pred HHHHHHHHhcc---CCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 84 GFKLLEHVGLE---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 84 G~elLe~I~~~---~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
|+++++.|+.. .++|||++++........++++.||++||.||++..+|..++.++++.+
T Consensus 87 G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~ 149 (222)
T PLN03029 87 GYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTK 149 (222)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHH
Confidence 99999999643 4789999999999999999999999999999999999999988887543
No 11
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.62 E-value=3.5e-14 Score=143.40 Aligned_cols=123 Identities=33% Similarity=0.452 Sum_probs=110.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-CeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQ-YEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVI 100 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~g-y~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVI 100 (681)
+||+||||++.++..|+.+|+..+ ++|+ .+.++.++++.++. ..||+||+|+.||+++|+++++.|+ ..++++||
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~--~~pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vv 78 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARE--LKPDVVLLDLSMPGMDGLEALKQLRARGPDIKVV 78 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhh--cCCCEEEEcCCCCCCChHHHHHHHHHHCCCCcEE
Confidence 589999999999999999998765 7765 56679999998764 4599999999999999999999996 66889999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhhcCCc
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKVGPK 148 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk~~~k 148 (681)
++|.+++...+.++++.||++|+.|..+.++|..+++.++.+..+.+.
T Consensus 79 vlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~~~~~~ 126 (211)
T COG2197 79 VLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYLPP 126 (211)
T ss_pred EEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCeEeCH
Confidence 999999999999999999999999999999999999999887755543
No 12
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.62 E-value=1.6e-14 Score=145.26 Aligned_cols=122 Identities=22% Similarity=0.374 Sum_probs=109.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCC
Q 005719 21 PIGMRVLAVDDDPTCLKVLENFLRAC-QYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDL 97 (681)
Q Consensus 21 P~GmRVLIVDDD~~~r~iL~~~Le~~-gy~-Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dl 97 (681)
|..++||||||++..+..++.+|+.. ++. |..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+..
T Consensus 2 ~~~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~--~pdlvllD~~mp~~~gle~~~~l~~~~~~~ 79 (225)
T PRK10046 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERF--KPGLILLDNYLPDGRGINLLHELVQAHYPG 79 (225)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCcHHHHHHHHHhcCCCC
Confidence 56789999999999999999999864 775 66899999999998754 4999999999999999999999964 5678
Q ss_pred cEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 98 PVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 98 PVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
|||++|+..+...+.++++.||++||.||++.++|...++++..++.
T Consensus 80 ~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~ 126 (225)
T PRK10046 80 DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH 126 (225)
T ss_pred CEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998876554
No 13
>PRK11173 two-component response regulator; Provisional
Probab=99.60 E-value=3.1e-14 Score=142.08 Aligned_cols=119 Identities=24% Similarity=0.412 Sum_probs=110.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIML 102 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImL 102 (681)
..+||||||++..+..+...|+..||.|..+.++.++++.+... .||+||+|+.||+++|+++++.++....+|||++
T Consensus 3 ~~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~pii~l 80 (237)
T PRK11173 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEN--DINLVIMDINLPGKNGLLLARELREQANVALMFL 80 (237)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhC--CCCEEEEcCCCCCCCHHHHHHHHhcCCCCCEEEE
Confidence 35899999999999999999999999999999999999988753 5999999999999999999999977678999999
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 103 SAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
++..+.....++++.||++|+.||++.++|...++.++++.
T Consensus 81 t~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 81 TGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 99999888999999999999999999999999999988764
No 14
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.59 E-value=3.4e-14 Score=139.66 Aligned_cols=118 Identities=29% Similarity=0.394 Sum_probs=108.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLS 103 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLS 103 (681)
++||||||++..+..+...|+..||.+..+.++.+++..+.. ..||+||+|+.||+++|+++++.++....+|||+++
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~lr~~~~~pvi~lt 79 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAAT--RKPDLIILDLGLPDGDGIEFIRDLRQWSAIPVIVLS 79 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 589999999999999999999999999999999999987764 359999999999999999999999877789999999
Q ss_pred cCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 104 AYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 104 a~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
+..+.....++++.||++||.||++.++|...++.++++.
T Consensus 80 ~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred CCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999887653
No 15
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.59 E-value=3.9e-14 Score=139.27 Aligned_cols=117 Identities=32% Similarity=0.445 Sum_probs=108.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVIML 102 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVImL 102 (681)
||||+|||++..+..+...|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~--~~dlvild~~l~~~~g~~l~~~lr~~~~~~pii~l 78 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEH--LPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 6899999999999999999999999999999999999988753 5999999999999999999999964 468999999
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 103 SAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
++..+.....++++.||++|+.||++.++|...++.++++
T Consensus 79 s~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~ 118 (223)
T PRK10816 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred EcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999988765
No 16
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.58 E-value=5.4e-14 Score=137.85 Aligned_cols=119 Identities=22% Similarity=0.434 Sum_probs=109.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIML 102 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImL 102 (681)
.++||+|||++..+..+...|+..||.|..+.++.++++.+.. ..||+||+|+.||+++|+++++.++....+|||++
T Consensus 2 ~~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~lr~~~~~~ii~l 79 (221)
T PRK10766 2 SYHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQN--QHVDLILLDINLPGEDGLMLTRELRSRSTVGIILV 79 (221)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhCCCCCEEEE
Confidence 3689999999999999999999999999999999999998864 35999999999999999999999976678999999
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 103 SAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
++..+.....++++.||++|+.||++.++|...+..++++.
T Consensus 80 ~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~ 120 (221)
T PRK10766 80 TGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRI 120 (221)
T ss_pred ECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999888763
No 17
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.58 E-value=9.5e-15 Score=155.82 Aligned_cols=118 Identities=37% Similarity=0.581 Sum_probs=108.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-c---CCC
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-E---MDL 97 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~---~dl 97 (681)
.-++||+|||++..+..+...|+..+|+|..+.++.+|++.+.... +|+||+|++||+|||++++++|+. . ..+
T Consensus 13 ~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~--~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~i 90 (360)
T COG3437 13 EKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEP--PDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRI 90 (360)
T ss_pred ccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcccC--CceEEeeccCCCccHHHHHHHHHhcCCccccc
Confidence 3579999999999999999999999999999999999999987654 999999999999999999999965 3 468
Q ss_pred cEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 98 PVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 98 PVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
|||++|+..+.+...+++..||++||.||+++.+|+.++...+.
T Consensus 91 p~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q 134 (360)
T COG3437 91 PVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQ 134 (360)
T ss_pred ceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999965443
No 18
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.57 E-value=7.4e-14 Score=135.84 Aligned_cols=118 Identities=34% Similarity=0.524 Sum_probs=108.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVIML 102 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVImL 102 (681)
|+||||||++..+..+..+|+..++.|..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~d~illd~~~~~~~g~~~~~~l~~~~~~~pii~l 78 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESG--HYSLVVLDLGLPDEDGLHLLRRWRQKKYTLPVLIL 78 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 6899999999999999999999999999999999999988653 4899999999999999999999964 467999999
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 103 SAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
++..+.....+++..||++|+.||++.++|...++.++++.
T Consensus 79 s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (222)
T PRK10643 79 TARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRH 119 (222)
T ss_pred ECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999998887653
No 19
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.57 E-value=1.4e-14 Score=171.10 Aligned_cols=123 Identities=30% Similarity=0.499 Sum_probs=113.3
Q ss_pred CCCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc--
Q 005719 17 IDKFPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE-- 94 (681)
Q Consensus 17 ~~~fP~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~-- 94 (681)
...+-.|.|||||||+...+++.+.+|++.|.+|+.+.++.+|++.+. ....||+||+|++||.|||+++.++|+..
T Consensus 660 ~~~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~-~~~~y~~ifmD~qMP~mDG~e~~~~irk~~~ 738 (786)
T KOG0519|consen 660 DSKLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLK-PPHSYDVIFMDLQMPEMDGYEATREIRKKER 738 (786)
T ss_pred ccccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcC-CCCcccEEEEEcCCcccchHHHHHHHHHhhc
Confidence 455677999999999999999999999999999999999999999996 34579999999999999999999999644
Q ss_pred CCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 005719 95 MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140 (681)
Q Consensus 95 ~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vl 140 (681)
..+|||+||++.+.+...+|++.|.+.||.|||..+.|..+++..+
T Consensus 739 ~~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 739 WHLPIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred CCCCEEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHh
Confidence 4899999999999999999999999999999999999999888765
No 20
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.57 E-value=8.6e-14 Score=137.21 Aligned_cols=117 Identities=26% Similarity=0.546 Sum_probs=107.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVIML 102 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVImL 102 (681)
||||||||++..+..+...|+..||.|..+.++.++++.+.. ..||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~~~~~~g~~~~~~lr~~~~~~pii~l 78 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMT--GDYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLL 78 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhh--CCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 689999999999999999999999999999999999988764 35999999999999999999999964 468999999
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 103 SAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
++..+.+...++++.||++|+.||++.++|...++.++++
T Consensus 79 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 79 TALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred EcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999988764
No 21
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.56 E-value=1.2e-13 Score=135.08 Aligned_cols=117 Identities=26% Similarity=0.488 Sum_probs=108.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLS 103 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLS 103 (681)
||||||||++..+..+...|+..|+.|..+.++.+++..+.. ..||+||+|+.||+++|+++++.++....+|||+++
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~ii~ls 78 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALK--DDYALIILDIMLPGMDGWQILQTLRTAKQTPVICLT 78 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 689999999999999999999999999999999999998864 459999999999999999999999766789999999
Q ss_pred cCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 104 AYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 104 a~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
+..+.....++++.||++|+.||++.++|...++.++++
T Consensus 79 ~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (223)
T PRK11517 79 ARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999887754
No 22
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.55 E-value=1.5e-13 Score=133.75 Aligned_cols=117 Identities=28% Similarity=0.393 Sum_probs=107.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVIML 102 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVImL 102 (681)
|+||||||++..+..+..+|+..+|.+..+.++.+++..+.. ..||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~i~~~~~~~~ii~l 78 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYS--APYDAVILDLTLPGMDGRDILREWREKGQREPVLIL 78 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 689999999999999999999889999999999999998864 35899999999999999999999964 467999999
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 103 SAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
+...+.....+++..||++|+.||++.++|..+++.++++
T Consensus 79 t~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~ 118 (219)
T PRK10336 79 TARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 (219)
T ss_pred ECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999888764
No 23
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.55 E-value=1.5e-13 Score=137.23 Aligned_cols=118 Identities=22% Similarity=0.383 Sum_probs=108.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLS 103 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLS 103 (681)
.+||||||++..+..+...|+..||.|..+.++.++++.+... .||+||+|+.||+++|+++++.++.....|||+++
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~--~~dlvild~~l~~~~g~~~~~~ir~~~~~pii~l~ 79 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILRE--QPDLVLLDIMLPGKDGMTICRDLRPKWQGPIVLLT 79 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 4899999999999999999999999999999999999988753 59999999999999999999999766678999999
Q ss_pred cCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 104 AYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 104 a~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
+..+.....+++..||++|+.||+..++|...++.++++.
T Consensus 80 ~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 80 SLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred CCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9888888889999999999999999999999998887653
No 24
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.54 E-value=1.8e-13 Score=133.23 Aligned_cols=118 Identities=30% Similarity=0.512 Sum_probs=107.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE---MDLPV 99 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~---~dlPV 99 (681)
+++||||||++..+..+...|+..++.|..+.++.+++..+... .||+||+|+.||+++|+++++.++.. +.+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~i 79 (226)
T TIGR02154 2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINER--GPDLILLDWMLPGTSGIELCRRLRRRPETRAIPI 79 (226)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhc--CCCEEEEECCCCCCcHHHHHHHHHccccCCCCCE
Confidence 46899999999999999999998899999999999999988753 59999999999999999999999643 57899
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
|++++..+.....++++.||++|+.||++.++|...++.++++
T Consensus 80 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (226)
T TIGR02154 80 IMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRR 122 (226)
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999888765
No 25
>PRK09483 response regulator; Provisional
Probab=99.54 E-value=8.3e-13 Score=128.82 Aligned_cols=188 Identities=21% Similarity=0.232 Sum_probs=141.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRAC-QYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVI 100 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~-gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVI 100 (681)
++||||||++..+..++.+|+.. ++.++ .+.++.++++.+... .||+||+|+.+|+++|+++++.++ ..+.+|||
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii 79 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTN--AVDVVLMDMNMPGIGGLEATRKILRYTPDVKII 79 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHCCCCeEE
Confidence 68999999999999999999874 78876 688999999988754 599999999999999999999984 45779999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhhcCCchhhhhhhhccccccCCCCCCCCCCCCCCCCCC
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKVGPKDQNKLLNQENSRVGAGEGGQGAMSTGNSDQNG 180 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk~~~k~~~~~l~~e~s~~~a~e~~~~~~s~~~s~~~g 180 (681)
+++...+.....+++..||++|+.||++.++|..+++.++++......+........
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~~~~~~~~~~~~~~~----------------------- 136 (217)
T PRK09483 80 MLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQRYIASDIAQQMALS----------------------- 136 (217)
T ss_pred EEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccCHHHHHHHHHh-----------------------
Confidence 999999999999999999999999999999999999998876543322111100000
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCCCCccCCCCccccchhhHHHHHHHHHHhcCCCCChhhHHhhcCCCCCcHHHHHHhh
Q 005719 181 KSNRKRKDQDGDEDEDGDDDGHENEDSTTQKKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHL 260 (681)
Q Consensus 181 ~~~rKRk~~~eeedEegedng~e~~~~s~~kk~r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~v~glt~~~v~ShL 260 (681)
.... .. .. +-..|..+..+.+..+.. .-+-|.|.+.|++ +..-|+.|+
T Consensus 137 --------~~~~-~~-------~~------------~~~~Lt~rE~~vl~~~~~-G~~~~~Ia~~l~i---s~~TV~~~~ 184 (217)
T PRK09483 137 --------QIEP-AT-------EN------------PFASLSERELQIMLMITK-GQKVNEISEQLNL---SPKTVNSYR 184 (217)
T ss_pred --------hccc-CC-------Cc------------cccccCHHHHHHHHHHHC-CCCHHHHHHHhCC---CHHHHHHHH
Confidence 0000 00 00 012366677777776631 2456789888864 777788888
Q ss_pred hhhHhhhc
Q 005719 261 QKFRLYLK 268 (681)
Q Consensus 261 qkyr~~l~ 268 (681)
++-+..|.
T Consensus 185 ~~i~~Kl~ 192 (217)
T PRK09483 185 YRMFSKLN 192 (217)
T ss_pred HHHHHHcC
Confidence 87776664
No 26
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.54 E-value=1.6e-13 Score=135.03 Aligned_cols=117 Identities=33% Similarity=0.510 Sum_probs=106.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLS 103 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLS 103 (681)
.|||||||++..+..+...|+..+|.|..+.++.++++.+.. .||+||+|+.||+++|+++++.++....+|||+++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~---~~d~vl~d~~~~~~~g~~~~~~l~~~~~~~ii~lt 78 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPKKNGIDTLKELRQTHQTPVIMLT 78 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc---CCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEE
Confidence 489999999999999999999899999999999999998752 49999999999999999999999755559999999
Q ss_pred cCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 104 AYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 104 a~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
+..+.....++++.||++|+.||++.++|...++.++++.
T Consensus 79 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 79 ARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred CCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 9999888999999999999999999999999999887654
No 27
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.54 E-value=1.7e-13 Score=137.49 Aligned_cols=117 Identities=21% Similarity=0.409 Sum_probs=106.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEc
Q 005719 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSA 104 (681)
Q Consensus 25 RVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa 104 (681)
+||||||++..+..+...|+..+|.|..+.++.++++.+... .||+||+|+.||+++|+++++.++....+|||++++
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~l~~~~g~~l~~~i~~~~~~pii~lt~ 80 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASE--TVDVVVVDLNLGREDGLEIVRSLATKSDVPIIIISG 80 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEEEC
Confidence 799999999999999999999999999999999999988643 599999999999999999999997667899999998
Q ss_pred C-CChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 105 Y-GDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 105 ~-~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
. .+.....++++.||++|+.||++.++|...++.++++.
T Consensus 81 ~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 81 DRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred CCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 5 46667789999999999999999999999999887653
No 28
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.54 E-value=2.2e-13 Score=134.50 Aligned_cols=117 Identities=29% Similarity=0.470 Sum_probs=107.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE---MDLPVI 100 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~---~dlPVI 100 (681)
++||||||++..+..+...|+..||++..+.++.++++.+.. ..||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi 80 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVV 80 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--cCCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 689999999999999999999889999999999999998864 359999999999999999999999643 578999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
+++...+.....++++.||++|+.||++.++|...++.++++
T Consensus 81 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 81 MLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988764
No 29
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.54 E-value=2.5e-13 Score=134.30 Aligned_cols=119 Identities=39% Similarity=0.616 Sum_probs=109.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIML 102 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImL 102 (681)
.++||||||++..+..+...|+..+|.|..+.++.+++..+... .||+||+|+.||+++|+++++.++....+|||++
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~--~~d~illd~~~~~~~g~~~~~~l~~~~~~~ii~l 83 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKE--QPDLVILDVMMPKLDGYGVCQEIRKESDVPIIML 83 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEE
Confidence 47999999999999999999998899999999999999988643 5999999999999999999999976678999999
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 103 SAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
++..+.....++++.||++|+.||++.++|...++.++++.
T Consensus 84 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 84 TALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred ECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999998887653
No 30
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.53 E-value=2.5e-13 Score=135.25 Aligned_cols=119 Identities=30% Similarity=0.489 Sum_probs=109.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVIM 101 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVIm 101 (681)
..+||||||++..+..+...|+..||+|..+.++.++++.+.. ..||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~lr~~~~~~pii~ 82 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTR--ESFHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIM 82 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 3689999999999999999999999999999999999998864 35999999999999999999999964 46799999
Q ss_pred EEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 102 LSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
+++..+......++..||++|+.||++.++|...++.++++.
T Consensus 83 ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~ 124 (239)
T PRK09468 83 LTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred EECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999887653
No 31
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.53 E-value=1.4e-13 Score=151.96 Aligned_cols=122 Identities=34% Similarity=0.532 Sum_probs=113.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCc
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL---EMDLP 98 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~---~~dlP 98 (681)
...+||||||+...++.++.+|...||.|+.+.++.+|+..+.+. .||+||+|+.||++||+++++.++. ...+|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~--~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ip 208 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAEL--PPDLVLLDANMPDMDGLELCTRLRQLERTRDIP 208 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcC--CCcEEEEecCCCccCHHHHHHHHhccccccccc
Confidence 467999999999999999999999999999999999999999865 5999999999999999999999853 35799
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhhc
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKV 145 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk~ 145 (681)
||+++..++.....+|++.|+.|||.||+...+|..+++..+++++.
T Consensus 209 ii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~ 255 (435)
T COG3706 209 IILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRY 255 (435)
T ss_pred EEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999998887654
No 32
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.53 E-value=2.6e-13 Score=137.50 Aligned_cols=120 Identities=21% Similarity=0.377 Sum_probs=104.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRAC-QYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVI 100 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~-gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVI 100 (681)
++||||||++..+..++.+|... ++.+. .+.++.++++.+......||+||+|+.||+++|+++++.++ ..+.+|||
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~~~~~vI 81 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDVI 81 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhCCCCCEE
Confidence 68999999999999999999864 67654 67889999988864334599999999999999999999995 45689999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
++|+..+...+.+++..||++|+.||++.++|...+.+++.+.
T Consensus 82 ~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~~ 124 (239)
T PRK10430 82 VISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKK 124 (239)
T ss_pred EEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998775543
No 33
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.52 E-value=4.2e-13 Score=132.09 Aligned_cols=117 Identities=26% Similarity=0.398 Sum_probs=106.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHhc-cCCCcEEE
Q 005719 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPD--MDGFKLLEHVGL-EMDLPVIM 101 (681)
Q Consensus 25 RVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPd--mDG~elLe~I~~-~~dlPVIm 101 (681)
+||||||++..+..+...|+..+|.|..+.++.+++..+... .||+||+|+.||+ .+|+++++.++. .+.+|||+
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ 79 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQR--LPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIF 79 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhC--CCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 699999999999999999999999999999999999988653 4999999999998 589999999964 46799999
Q ss_pred EEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 102 LSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
+++..+......+++.||++|+.||+..++|..+++.++++.
T Consensus 80 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 80 LTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred EECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999988754
No 34
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.52 E-value=1.7e-13 Score=162.58 Aligned_cols=119 Identities=26% Similarity=0.401 Sum_probs=109.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-----C
Q 005719 21 PIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE-----M 95 (681)
Q Consensus 21 P~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~-----~ 95 (681)
|.++|||||||++..+..+..+|+..||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+.. +
T Consensus 688 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~--~~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~ 765 (921)
T PRK15347 688 PWQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQH--RFDLVLMDIRMPGLDGLETTQLWRDDPNNLDP 765 (921)
T ss_pred cccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhchhhcCC
Confidence 5578999999999999999999999999999999999999998754 59999999999999999999999642 5
Q ss_pred CCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 96 DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 96 dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
.+|||++|+..+.....++++.|+++||.||++.++|..++.++++
T Consensus 766 ~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 766 DCMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred CCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999987754
No 35
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.51 E-value=4.1e-13 Score=131.15 Aligned_cols=117 Identities=32% Similarity=0.456 Sum_probs=106.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE-MDLPVIML 102 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~-~dlPVImL 102 (681)
++||||||++..+..+...|...+|.|..+.++.+++..+.. ..||+||+|+.||+.+|+++++.++.. +.+|||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 81 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQ--QPPDLVILDVGLPDISGFELCRQLLAFHPALPVIFL 81 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 689999999999999999999889999999999999988864 359999999999999999999999644 78999999
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 103 SAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
+...+......++..||++|+.||++.++|...++.++++
T Consensus 82 s~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 121 (228)
T PRK11083 82 TARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRR 121 (228)
T ss_pred EcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCc
Confidence 9999888899999999999999999999999999887764
No 36
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.51 E-value=2.4e-13 Score=163.53 Aligned_cols=120 Identities=32% Similarity=0.507 Sum_probs=111.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVI 100 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVI 100 (681)
.+++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+|+|+++++.|+. .+.+|||
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~--~~DlVl~D~~mP~mdG~el~~~ir~~~~~~pII 877 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKN--HIDIVLTDVNMPNMDGYRLTQRLRQLGLTLPVI 877 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 568999999999999999999999999999999999999999754 5999999999999999999999964 4679999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
++|+....+...++++.|+++||.||++.++|..++.++.++.
T Consensus 878 ~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 878 GVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998876543
No 37
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.50 E-value=5.4e-13 Score=132.60 Aligned_cols=121 Identities=20% Similarity=0.291 Sum_probs=106.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC-e-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCC---CCHHHHHHHHh-ccCC
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQY-E-VTVTNQAVTALKMLRENRNNFDLVISDVHMPD---MDGFKLLEHVG-LEMD 96 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy-~-Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPd---mDG~elLe~I~-~~~d 96 (681)
+++||||||++..+..++.+|+..++ . |..+.++.++++.+... .||+||+|+.||+ ++|+++++.|+ ..+.
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~--~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~ 80 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKL--DAHVLITDLSMPGDKYGDGITLIKYIKRHFPS 80 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhC--CCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCC
Confidence 58999999999999999999987654 3 56788999999988753 4999999999999 59999999995 4578
Q ss_pred CcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhhc
Q 005719 97 LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKV 145 (681)
Q Consensus 97 lPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk~ 145 (681)
+|||+++...+...+.++++.||++|+.||.+.++|..+++.++....+
T Consensus 81 ~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~~~ 129 (216)
T PRK10840 81 LSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKF 129 (216)
T ss_pred CcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCCee
Confidence 9999999999999999999999999999999999999999998765443
No 38
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.49 E-value=2.9e-13 Score=160.39 Aligned_cols=119 Identities=27% Similarity=0.446 Sum_probs=109.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCC
Q 005719 21 PIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL---EMDL 97 (681)
Q Consensus 21 P~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~---~~dl 97 (681)
...++||||||++..+..++.+|+..|+.|..+.++.+|++.+... .||+||+|+.||+|+|+++++.|+. ...+
T Consensus 665 ~~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~~--~~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~ 742 (919)
T PRK11107 665 RLPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQR--PFDLILMDIQMPGMDGIRACELIRQLPHNQNT 742 (919)
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCcHHHHHHHHHhcccCCCC
Confidence 3468999999999999999999999999999999999999998754 5999999999999999999999964 3579
Q ss_pred cEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 98 PVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 98 PVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
|||++|+........++++.||++||.||++.++|...+.++++
T Consensus 743 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 786 (919)
T PRK11107 743 PIIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKP 786 (919)
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999998887754
No 39
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.49 E-value=9.9e-14 Score=144.35 Aligned_cols=114 Identities=31% Similarity=0.473 Sum_probs=102.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVIML 102 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVImL 102 (681)
+||+|||||......|..+|.+.++.+..|....+|++.|... .|||||+|+.||+|+|++++++++ ..+.+|||++
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~--kpDLifldI~mp~~ngiefaeQvr~i~~~v~iifI 78 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVF--KPDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFI 78 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhc--CCCEEEEEeecCCccHHHHHHHHHHhhccCcEEEE
Confidence 5899999999999999999999998899999999999999865 499999999999999999999995 5678999999
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 103 SAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
|++.+ ....++...++|||+||+..+.|..++.+..+
T Consensus 79 ssh~e--ya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k 115 (361)
T COG3947 79 SSHAE--YADDSFGMNLDDYLPKPVTPEKLNRAIDRRLK 115 (361)
T ss_pred ecchh--hhhhhcccchHhhccCCCCHHHHHHHHHHHhc
Confidence 99854 55567777889999999999999999888763
No 40
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.48 E-value=9.6e-13 Score=127.17 Aligned_cols=118 Identities=20% Similarity=0.301 Sum_probs=107.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVIM 101 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVIm 101 (681)
|+||||||++..+..+...|+..++.+. .+.++.++++.+... .||+||+|+.||+++|+++++.++. .+..|||+
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 78 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL--KPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII 78 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHcc--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEE
Confidence 6899999999999999999998899987 689999999988743 5999999999999999999999964 46789999
Q ss_pred EEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 102 LSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
+++..+.....+++..||++|+.||++.++|...++.++++.
T Consensus 79 ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 120 (204)
T PRK09958 79 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 (204)
T ss_pred EeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999987653
No 41
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.47 E-value=1.3e-12 Score=126.74 Aligned_cols=116 Identities=30% Similarity=0.530 Sum_probs=106.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEEEEEc
Q 005719 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVIMLSA 104 (681)
Q Consensus 26 VLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVImLSa 104 (681)
||||||++..+..+...|+..+|.+..+.++.++++.+.. ..||+||+|+.||+++|+++++.++ ..+.+|||+++.
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~iivls~ 78 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALK--DDYDLIILDVMLPGMDGWQILQTLRRSGKQTPVLFLTA 78 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHccCCCCcEEEEEc
Confidence 6899999999999999999889999999999999998864 3599999999999999999999996 457899999999
Q ss_pred CCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 105 YGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 105 ~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
..+.....+++..||++|+.||++.++|...++.++++.
T Consensus 79 ~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 117 (218)
T TIGR01387 79 RDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRS 117 (218)
T ss_pred CCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999998887653
No 42
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.46 E-value=6.3e-13 Score=158.11 Aligned_cols=120 Identities=23% Similarity=0.344 Sum_probs=110.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVI 100 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVI 100 (681)
.+++||||||++..+..+..+|+..||.|..+.++.+|++.+... ..||+||+|+.||++||+++++.|+ ..+.+|||
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~-~~~Dlvl~D~~mp~~~G~~~~~~lr~~~~~~~ii 758 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNS-EPFAAALVDFDLPDYDGITLARQLAQQYPSLVLI 758 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcC-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEE
Confidence 468999999999999999999999999999999999999988642 3589999999999999999999996 45789999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
++|+........+++..|+++||.||++.++|..++.++++.
T Consensus 759 ~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 800 (914)
T PRK11466 759 GFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQL 800 (914)
T ss_pred EEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999988754
No 43
>PRK14084 two-component response regulator; Provisional
Probab=99.45 E-value=2e-12 Score=130.35 Aligned_cols=115 Identities=23% Similarity=0.410 Sum_probs=99.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-C-eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQ-Y-EVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE-MDLPVI 100 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~g-y-~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~-~dlPVI 100 (681)
|+||||||++..+..+..+|+..+ + .+..+.++.++++.+... .||+||+|+.||+++|+++++.++.. ...+||
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~~--~~dlv~lDi~m~~~~G~~~~~~i~~~~~~~~iI 78 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLIN--QYDIIFLDINLMDESGIELAAKIQKMKEPPAII 78 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEE
Confidence 689999999999999999998765 4 466889999999988753 59999999999999999999999643 456788
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
++|+.. ....++++.||.+||.||+..++|..++++++++
T Consensus 79 ~~t~~~--~~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (246)
T PRK14084 79 FATAHD--QFAVKAFELNATDYILKPFEQKRIEQAVNKVRAT 118 (246)
T ss_pred EEecCh--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 888764 3567899999999999999999999999988654
No 44
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.44 E-value=2.2e-12 Score=129.05 Aligned_cols=115 Identities=26% Similarity=0.444 Sum_probs=97.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-e-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQY-E-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIM 101 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy-~-Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVIm 101 (681)
++||||||++..+..+..+|+..+. . +..+.++.++++.+... .||+||+|+.||+++|+++++.++.....+||+
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~--~~dlv~lDi~~~~~~G~~~~~~l~~~~~~~ii~ 79 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHRL--KPDVVFLDIQMPRISGLELVGMLDPEHMPYIVF 79 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHhcccCCCEEEE
Confidence 7999999999999999999988773 3 34678999999988753 589999999999999999999885433456888
Q ss_pred EEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 102 LSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
+|+.. +.+.++++.||.+||.||++.++|...+.++.+.
T Consensus 80 vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 80 VTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred EeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 88764 4677899999999999999999999999888653
No 45
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.44 E-value=2.5e-12 Score=131.55 Aligned_cols=117 Identities=32% Similarity=0.555 Sum_probs=103.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-C--CC
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRAC-QYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE-M--DL 97 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~-gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~-~--dl 97 (681)
.++||||||++..+..+..+|... ++.++ .+.++.++++.+... .||+||+|+.||+++|+++++.++.. . ..
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~~--~~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~ 79 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKEQ--QPDVVVLDIIMPHLDGIGVLEKLNEIELSARP 79 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhccccCC
Confidence 479999999999999999999864 55654 688999999998754 59999999999999999999999643 2 37
Q ss_pred cEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 98 PVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 98 PVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
|||++|+........+++..|+++|+.||++.++|...++++++
T Consensus 80 ~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~ 123 (262)
T TIGR02875 80 RVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAW 123 (262)
T ss_pred eEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHc
Confidence 89999999999999999999999999999999999999988764
No 46
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.44 E-value=1e-12 Score=125.68 Aligned_cols=111 Identities=23% Similarity=0.443 Sum_probs=103.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEEEEE
Q 005719 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVIMLS 103 (681)
Q Consensus 25 RVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVImLS 103 (681)
..||||||..++..|...+++-||.|+++.+..++|..++.. .|..+++|++|.+.+|+++++.|+ ...+..||++|
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~--~PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLT 88 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTA--PPAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLT 88 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcC--CCceEEEEeeecCCCchHHHHHHHhcCCcceEEEEe
Confidence 689999999999999999999999999999999999999854 589999999999999999999995 56789999999
Q ss_pred cCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHH
Q 005719 104 AYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQ 137 (681)
Q Consensus 104 a~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q 137 (681)
++.+...+.+|++.|||+||.||-+.+++...+.
T Consensus 89 Gy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~ 122 (182)
T COG4567 89 GYASIATAVEAVKLGACDYLAKPADADDILAALL 122 (182)
T ss_pred cchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHh
Confidence 9999999999999999999999999998866543
No 47
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.43 E-value=7.6e-13 Score=143.06 Aligned_cols=118 Identities=29% Similarity=0.458 Sum_probs=105.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCc
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL---EMDLP 98 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~---~~dlP 98 (681)
...+||||||++..+..+..+|.+ .+.+..+.++.+|+..+.. ..||+||+|+.||+++|+++++.++. .+.+|
T Consensus 154 ~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~--~~~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~~ 230 (457)
T PRK09581 154 EDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAE--TNYDLVIVSANFENYDPLRLCSQLRSKERTRYVP 230 (457)
T ss_pred cCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhccc--CCCCEEEecCCCCCchHhHHHHHHHhccccCCCc
Confidence 457899999999999999999976 5778889999999998764 45999999999999999999999964 36899
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
||++|+.++.+.+.+++..||+|||.||++.++|...+....++
T Consensus 231 ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 231 ILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred EEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888776543
No 48
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.43 E-value=3e-12 Score=122.93 Aligned_cols=116 Identities=25% Similarity=0.333 Sum_probs=103.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRAC-QYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIM 101 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~-gy~-Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVIm 101 (681)
++||||||++..+..++..|+.. ++. +..+.++.++++.+.. ..||+||+|+.||+++|+++++.+. ..+|||+
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~--~~~~vi~ 77 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPG--RGVQVCICDISMPDISGLELLSQLP--KGMATIM 77 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHc--cCCCEEE
Confidence 58999999999999999999754 565 4578899999998864 3599999999999999999999885 3689999
Q ss_pred EEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 102 LSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
++...+......++..||++|+.||++.++|..+++.++++.
T Consensus 78 ~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (196)
T PRK10360 78 LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGG 119 (196)
T ss_pred EECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999988653
No 49
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.43 E-value=1.4e-12 Score=155.71 Aligned_cols=119 Identities=28% Similarity=0.368 Sum_probs=108.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CC---C
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE-MD---L 97 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~-~d---l 97 (681)
.+.+||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.|+.. .. +
T Consensus 701 ~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~ 778 (968)
T TIGR02956 701 PPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQ--HAFDLALLDINLPDGDGVTLLQQLRAIYGAKNEV 778 (968)
T ss_pred cccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHC--CCCCEEEECCCCCCCCHHHHHHHHHhCccccCCC
Confidence 34689999999999999999999999999999999999999975 459999999999999999999999643 23 8
Q ss_pred cEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 98 PVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 98 PVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
|||++|+....+...+++..|+++||.||++.++|..++.+++..
T Consensus 779 pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 779 KFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILAG 823 (968)
T ss_pred eEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999887653
No 50
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.43 E-value=1.6e-12 Score=142.71 Aligned_cols=119 Identities=33% Similarity=0.634 Sum_probs=109.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVI 100 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVI 100 (681)
..++||||||++..+..+..+|+..||.|..+.++.++++.+.. ..||+||+|+.||+++|+++++.++ ..+.+|||
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~--~~~DlvilD~~m~~~~G~~~~~~ir~~~~~~~vi 81 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVRE--QVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVL 81 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEE
Confidence 45899999999999999999999999999999999999998874 3599999999999999999999995 45678999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
++|+..+.+.+.++++.||.+|+.||++.++|...+++++++
T Consensus 82 ~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~ 123 (441)
T PRK10365 82 IMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 (441)
T ss_pred EEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888764
No 51
>PRK15115 response regulator GlrR; Provisional
Probab=99.42 E-value=2.6e-12 Score=141.61 Aligned_cols=118 Identities=32% Similarity=0.530 Sum_probs=108.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVIM 101 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVIm 101 (681)
..+||||||++..+..+...|+..||.|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.++ ..+.+|||+
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~--~~~dlvilD~~lp~~~g~~ll~~l~~~~~~~pvIv 82 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNR--EKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVII 82 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhc--CCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 3799999999999999999999999999999999999998874 3599999999999999999999985 456799999
Q ss_pred EEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 102 LSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
+|+..+.....+++..||.+||.||+..++|...++++++.
T Consensus 83 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 83 LTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred EECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999887754
No 52
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.42 E-value=7e-12 Score=123.95 Aligned_cols=117 Identities=28% Similarity=0.485 Sum_probs=107.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLS 103 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLS 103 (681)
.+||||||++..+..+..+|...++.|..+.++.+++..+.. ..||+||+|+.||+++|+++++.++....+|||+++
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~g~~~~~~l~~~~~~pii~l~ 88 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQ--TPPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVT 88 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 389999999999999999999999999999999999998864 359999999999999999999999766789999999
Q ss_pred cCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 104 AYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 104 a~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
...+......++..||++|+.||++.++|...++.++++
T Consensus 89 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~ 127 (240)
T PRK10710 89 AKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 (240)
T ss_pred cCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhh
Confidence 998888889999999999999999999999999887764
No 53
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.41 E-value=7e-12 Score=121.89 Aligned_cols=118 Identities=31% Similarity=0.518 Sum_probs=106.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVIML 102 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVImL 102 (681)
|+||+|||++..+..+...|+..++.+..+.++.++++.+.. ..||+||+|+.+|+++|+++++.++. .+.+|||++
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~vild~~~~~~~~~~~~~~i~~~~~~~~ii~l 78 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQS--EMYALAVLDINMPGMDGLEVLQRLRKRGQTLPVLLL 78 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhh--CCCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEE
Confidence 589999999999999999999889999999999999887764 35999999999999999999999854 467999999
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 103 SAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
+...+.....+++..||++|+.||+..++|...++.++++.
T Consensus 79 t~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 119 (221)
T PRK15479 79 TARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 119 (221)
T ss_pred ECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999998887654
No 54
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.41 E-value=3.2e-12 Score=141.19 Aligned_cols=120 Identities=31% Similarity=0.544 Sum_probs=108.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcE
Q 005719 21 PIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPV 99 (681)
Q Consensus 21 P~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPV 99 (681)
+.+.+||||||++..+..+...|...||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++ ..+.+||
T Consensus 2 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlillD~~~p~~~g~~ll~~i~~~~~~~pv 79 (457)
T PRK11361 2 TAINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADI--HPDVVLMDIRMPEMDGIKALKEMRSHETRTPV 79 (457)
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCE
Confidence 3456899999999999999999999999999999999999988753 599999999999999999999985 4467999
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
|++|+..+.....++++.||.+|+.||++.++|...+++++..
T Consensus 80 I~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~ 122 (457)
T PRK11361 80 ILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQL 122 (457)
T ss_pred EEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhccc
Confidence 9999999999999999999999999999999999988877643
No 55
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.41 E-value=6.4e-12 Score=121.20 Aligned_cols=119 Identities=21% Similarity=0.355 Sum_probs=105.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRAC-QYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPV 99 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~-gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPV 99 (681)
..+||||||++..+..++..|+.. ++.++ .+.++.++++.+.. ..||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvild~~l~~~~g~~~~~~l~~~~~~~~i 80 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRT--RPVDLIIMDIDLPGTDGFTFLKRIKQIQSTVKV 80 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcE
Confidence 368999999999999999999876 57775 67889999988764 35999999999999999999999864 467999
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
|+++...+.....+++..||++|+.||+..++|..+++.++++.
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~ 124 (210)
T PRK09935 81 LFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGY 124 (210)
T ss_pred EEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 99999999899999999999999999999999999999887654
No 56
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.41 E-value=4.4e-12 Score=141.00 Aligned_cols=117 Identities=32% Similarity=0.464 Sum_probs=108.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVIML 102 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVImL 102 (681)
.+||||||++..+..++.+|+..||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.++ ..+.+|||++
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~~--~~DlvllD~~lp~~dgl~~l~~ir~~~~~~pvIvl 81 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASK--TPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM 81 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEECCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 5899999999999999999999999999999999999998754 599999999999999999999995 4467999999
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 103 SAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
++..+.+...++++.||.+|+.||++.++|...+.+++..
T Consensus 82 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 121 (469)
T PRK10923 82 TAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (469)
T ss_pred ECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888754
No 57
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.39 E-value=3.7e-12 Score=149.63 Aligned_cols=116 Identities=24% Similarity=0.358 Sum_probs=103.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CC-Cc
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE---MD-LP 98 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~---~d-lP 98 (681)
+++||||||++..+..+..+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.|+.. .. .|
T Consensus 525 ~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~--~~~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~~~ 602 (779)
T PRK11091 525 ALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDP--DEYDLVLLDIQLPDMTGLDIARELRERYPREDLPP 602 (779)
T ss_pred ccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEcCCCCCCCHHHHHHHHHhccccCCCCc
Confidence 5899999999999999999999999999999999999999874 459999999999999999999999643 34 48
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
||++|+.... ...+++..|+++||.||++.++|..++++++.
T Consensus 603 ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 644 (779)
T PRK11091 603 LVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWD 644 (779)
T ss_pred EEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhc
Confidence 9999987654 46788999999999999999999999988764
No 58
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.39 E-value=4.9e-12 Score=135.36 Aligned_cols=102 Identities=25% Similarity=0.412 Sum_probs=90.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHH-hCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLR-ACQYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIM 101 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le-~~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVIm 101 (681)
||||||||++..+..++.+|+ ..+++|. .+.++.++++.+... .||+|++|+.||+|+|+++++.|+....+|||+
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~~--~pDlVllD~~mp~~~G~e~l~~l~~~~~~pviv 78 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAAQ--PPDVILMDLEMPRMDGVEATRRIMAERPCPILI 78 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhcc--CCCEEEEcCCCCCCCHHHHHHHHHHHCCCcEEE
Confidence 589999999999999999994 5678886 689999999998753 599999999999999999999997666799999
Q ss_pred EEcCCC--hHHHHHHHhcCCcEEEeCCC
Q 005719 102 LSAYGD--TKLVMKGITHGACDYLLKPV 127 (681)
Q Consensus 102 LSa~~d--~e~v~kAl~~GA~DYLlKPv 127 (681)
++.... .....++++.||.+|+.||+
T Consensus 79 vs~~~~~~~~~~~~al~~Ga~d~l~KP~ 106 (337)
T PRK12555 79 VTSLTERNASRVFEAMGAGALDAVDTPT 106 (337)
T ss_pred EeCCCCcCHHHHHHHHhcCceEEEECCC
Confidence 998743 56677899999999999999
No 59
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.39 E-value=4.1e-12 Score=155.69 Aligned_cols=120 Identities=31% Similarity=0.511 Sum_probs=109.7
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCc
Q 005719 20 FPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLP 98 (681)
Q Consensus 20 fP~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlP 98 (681)
.+..++||||||++..+..+..+|+..||+|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.|+ ..+.+|
T Consensus 955 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlil~D~~mp~~~g~~~~~~i~~~~~~~p 1032 (1197)
T PRK09959 955 LPEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSM--QHYDLLITDVNMPNMDGFELTRKLREQNSSLP 1032 (1197)
T ss_pred cccCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhc--CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCC
Confidence 3456899999999999999999999999999999999999999874 3599999999999999999999996 446799
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
||++|+..+.....++++.||++||.||++.++|...++++++
T Consensus 1033 ii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1033 IWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999998887654
No 60
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.38 E-value=6.9e-11 Score=113.66 Aligned_cols=190 Identities=24% Similarity=0.351 Sum_probs=138.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRA-CQYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPV 99 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~-~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPV 99 (681)
.++|||||+++..+..+...|+. .++.+. .+.+..+++..+.. ..||+||+|..+|+++|+++++.++. .+..|+
T Consensus 6 ~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~~~~~~~~l~~~~~~~~i 83 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANR--LDPDVILLDLNMKGMSGLDTLNALRRDGVTAQI 83 (215)
T ss_pred eEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHh--cCCCEEEEecCCCCCcHHHHHHHHHHhCCCCeE
Confidence 37899999999999999999975 477775 68899999988764 35999999999999999999999864 457899
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhhcCCchhhhhhhhccccccCCCCCCCCCCCCCCCCC
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKVGPKDQNKLLNQENSRVGAGEGGQGAMSTGNSDQN 179 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk~~~k~~~~~l~~e~s~~~a~e~~~~~~s~~~s~~~ 179 (681)
|+++...+......++..||++|+.||++.++|..++++++++............
T Consensus 84 i~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~------------------------- 138 (215)
T PRK10403 84 IILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYL------------------------- 138 (215)
T ss_pred EEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCCCeecCHHHHHHH-------------------------
Confidence 9999988888899999999999999999999999999988754321111000000
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCCCCccCCCCccccchhhHHHHHHHHHHhcCCCCChhhHHhhcCCCCCcHHHHHHh
Q 005719 180 GKSNRKRKDQDGDEDEDGDDDGHENEDSTTQKKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASH 259 (681)
Q Consensus 180 g~~~rKRk~~~eeedEegedng~e~~~~s~~kk~r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~v~glt~~~v~Sh 259 (681)
+.+.. ... ... + + ..|..+..+.+..+. .....+.|.+.++ ++..-|..|
T Consensus 139 ----~~~~~-~~~---------~~~--------~---~-~~Lt~~e~~vl~~~~-~g~s~~~ia~~l~---~s~~tv~~~ 188 (215)
T PRK10403 139 ----REREM-FGA---------EED--------P---F-SVLTERELDVLHELA-QGLSNKQIASVLN---ISEQTVKVH 188 (215)
T ss_pred ----Hhhhc-cCC---------CCc--------c---c-ccCCHHHHHHHHHHH-CCCCHHHHHHHcC---CCHHHHHHH
Confidence 00000 000 000 0 0 135556666666662 2366789999984 688889999
Q ss_pred hhhhHhhhcc
Q 005719 260 LQKFRLYLKR 269 (681)
Q Consensus 260 Lqkyr~~l~~ 269 (681)
+.+=|..|..
T Consensus 189 ~~~i~~kl~~ 198 (215)
T PRK10403 189 IRNLLRKLNV 198 (215)
T ss_pred HHHHHHHcCC
Confidence 8887776643
No 61
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.38 E-value=6.4e-12 Score=138.64 Aligned_cols=113 Identities=27% Similarity=0.411 Sum_probs=103.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC-----CCHHHHHHHHh-ccCCCcE
Q 005719 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPD-----MDGFKLLEHVG-LEMDLPV 99 (681)
Q Consensus 26 VLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPd-----mDG~elLe~I~-~~~dlPV 99 (681)
||||||++..+..+...| .+|+|..+.++.+|++.+... .||+||+|+.||+ ++|+++++.++ ..+.+||
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~--~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~~~pi 76 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRH--EPAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKV 76 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCE
Confidence 689999999999999988 689999999999999999754 5999999999996 89999999985 4578999
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
|++|+..+.+...++++.||++||.||++.++|..+++++++.
T Consensus 77 I~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~ 119 (445)
T TIGR02915 77 IVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHL 119 (445)
T ss_pred EEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999999887653
No 62
>PRK13435 response regulator; Provisional
Probab=99.37 E-value=1.5e-11 Score=114.17 Aligned_cols=117 Identities=18% Similarity=0.274 Sum_probs=100.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHhccCCCcE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMP-DMDGFKLLEHVGLEMDLPV 99 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MP-dmDG~elLe~I~~~~dlPV 99 (681)
..++|||+|+++..+..+...|+..+|.++ .+.++.++++.+... .||+||+|+.++ +.+|+++++.+.....+||
T Consensus 4 ~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~dliivd~~~~~~~~~~~~~~~l~~~~~~pi 81 (145)
T PRK13435 4 RQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRR--QPDVALVDVHLADGPTGVEVARRLSADGGVEV 81 (145)
T ss_pred ccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhc--CCCEEEEeeecCCCCcHHHHHHHHHhCCCCCE
Confidence 357999999999999999999998899987 788999999887643 599999999998 4899999999866678999
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
|+++...+ ...++..||++|+.||++.++|...+++++.++
T Consensus 82 i~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (145)
T PRK13435 82 VFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSARR 122 (145)
T ss_pred EEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhcC
Confidence 99987643 246788999999999999999999999887554
No 63
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.37 E-value=4.1e-11 Score=103.49 Aligned_cols=118 Identities=30% Similarity=0.558 Sum_probs=104.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE---MDLP 98 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~-Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~---~dlP 98 (681)
.++|+++++++.....+...|+..++. +..+.+..++++.+.. ..+|++++|..+++++|+++++.++.. ..+|
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~di~l~d~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGFGFVISDWNMPNMDGLELLKTIRADGAMSALP 82 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhc--cCCCEEEEcCCCCCCCHHHHHHHHHhCCCcCCCc
Confidence 479999999999999999999988884 7778899999888764 358999999999999999999998643 4689
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
+|+++.........+++..|+.+|+.||++.+++...+++++++
T Consensus 83 ~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 83 VLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred EEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 99999888888899999999999999999999999999888764
No 64
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.36 E-value=1.2e-11 Score=117.15 Aligned_cols=120 Identities=30% Similarity=0.448 Sum_probs=107.3
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcE
Q 005719 21 PIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPV 99 (681)
Q Consensus 21 P~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPV 99 (681)
|...+||||||++..+..+...|+..+|.+..+.++.++++.+.. ..||+||+|..+++++|+++++.++ ..+.+||
T Consensus 1 ~~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~d~ii~d~~~~~~~~~~~~~~l~~~~~~~~i 78 (202)
T PRK09390 1 SDKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPG--LRFGCVVTDVRMPGIDGIELLRRLKARGSPLPV 78 (202)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhcc--CCCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCE
Confidence 345789999999999999999999889999999999999888764 3599999999999999999999995 4467899
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
|+++...+......++..|+.+|+.||+..+++...++.+++.
T Consensus 79 i~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~ 121 (202)
T PRK09390 79 IVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred EEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998888877654
No 65
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.35 E-value=1.1e-11 Score=137.42 Aligned_cols=115 Identities=34% Similarity=0.522 Sum_probs=105.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEEEEEc
Q 005719 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVIMLSA 104 (681)
Q Consensus 26 VLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVImLSa 104 (681)
||||||++..+..+..+|+..||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.++ ..+.+|||++++
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~DlVllD~~~p~~~g~~ll~~l~~~~~~~~vIvlt~ 78 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARG--QPDLLITDVRMPGEDGLDLLPQIKKRHPQLPVIVMTA 78 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHHhCCCCeEEEEeC
Confidence 68999999999999999999999999999999999988743 599999999999999999999995 456789999999
Q ss_pred CCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 105 YGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 105 ~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
..+.....+++..||.+|+.||+..++|...+++++..
T Consensus 79 ~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 116 (463)
T TIGR01818 79 HSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAH 116 (463)
T ss_pred CCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887654
No 66
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.33 E-value=3.4e-11 Score=130.30 Aligned_cols=118 Identities=32% Similarity=0.509 Sum_probs=107.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE---MDLPVI 100 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~---~dlPVI 100 (681)
.+|||||+++..+..+...|...+|.|..+.++.++++.+... .||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii 80 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICERE--QPDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVV 80 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhc--CCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 4899999999999999999988899999999999999998753 59999999999999999999999653 368999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
++++..+.....+++..||++|+.||++.++|..++..+++.+
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (457)
T PRK09581 81 MVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRLK 123 (457)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998877644
No 67
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.32 E-value=3e-11 Score=129.99 Aligned_cols=104 Identities=29% Similarity=0.480 Sum_probs=90.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRAC-QYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVI 100 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~-gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVI 100 (681)
.+|||||||++..+..+..+|... ++.+. .+.++.++++.+... .||+|++|+.||+++|+++++.|+....+|||
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~~--~~DlVllD~~mp~~dgle~l~~i~~~~~~piI 80 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKKL--NPDVITLDVEMPVMDGLDALEKIMRLRPTPVV 80 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhhh--CCCEEEEeCCCCCCChHHHHHHHHHhCCCCEE
Confidence 479999999999999999999876 78887 789999999988754 49999999999999999999999655559999
Q ss_pred EEEcCC--ChHHHHHHHhcCCcEEEeCCCC
Q 005719 101 MLSAYG--DTKLVMKGITHGACDYLLKPVR 128 (681)
Q Consensus 101 mLSa~~--d~e~v~kAl~~GA~DYLlKPvs 128 (681)
++++.. ......++++.||++||.||+.
T Consensus 81 vls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 81 MVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred EEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 999753 3466778999999999999994
No 68
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.30 E-value=8.3e-11 Score=111.94 Aligned_cols=120 Identities=22% Similarity=0.374 Sum_probs=104.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRAC-QYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLP 98 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~-gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlP 98 (681)
..++|||||+++..+..+...|... ++.++ .+.++.++++.+.. ..||+|++|+.|++++|+++++.++. .+.+|
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~ 79 (211)
T PRK15369 2 KNYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQ--LEPDIVILDLGLPGMNGLDVIPQLHQRWPAMN 79 (211)
T ss_pred CccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHHHCCCCc
Confidence 4579999999999999999999865 46654 78889999887764 35999999999999999999999854 46789
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
+|+++...+......++..|+.+|+.||+..++|...++.++++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 124 (211)
T PRK15369 80 ILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVGK 124 (211)
T ss_pred EEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999998876543
No 69
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.26 E-value=5.2e-11 Score=128.35 Aligned_cols=103 Identities=30% Similarity=0.469 Sum_probs=92.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQ--YEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIM 101 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~g--y~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVIm 101 (681)
+|||||||.+..|+.|+++|...+ +-|.++.++.+|++++.+. .||+|.+|+.||.|||+++++.|.....+||||
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~--~PDVi~ld~emp~mdgl~~l~~im~~~p~pVim 79 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKL--KPDVITLDVEMPVMDGLEALRKIMRLRPLPVIM 79 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhc--CCCEEEEecccccccHHHHHHHHhcCCCCcEEE
Confidence 799999999999999999999877 4556888999999999864 499999999999999999999997779999999
Q ss_pred EEcCCC--hHHHHHHHhcCCcEEEeCCCC
Q 005719 102 LSAYGD--TKLVMKGITHGACDYLLKPVR 128 (681)
Q Consensus 102 LSa~~d--~e~v~kAl~~GA~DYLlKPvs 128 (681)
+++... .+...++++.||.||+.||..
T Consensus 80 vsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 80 VSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred EeccccccHHHHHHHHhcCcceeecCCCc
Confidence 987643 567889999999999999974
No 70
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.26 E-value=4e-11 Score=138.51 Aligned_cols=117 Identities=22% Similarity=0.275 Sum_probs=102.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVIM 101 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVIm 101 (681)
.++||||||++..+..+..+|...+|.|..+.++.++++.+.. ..||+||+|+.||+++|+++++.|+ ..+.+|||+
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~--~~~Dlvl~d~~lp~~~g~~~l~~l~~~~~~~piI~ 84 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEA--GEIDCVVADHEPDGFDGLALLEAVRQTTAVPPVVV 84 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhc--cCCCEEEEeccCCCCcHHHHHHHHHhcCCCCCEEE
Confidence 4799999999999999999998889999999999999998864 3599999999999999999999995 457899999
Q ss_pred EEcCCChHHHHHHHhcCCcEEEeCCCChH--HHHHHHHHHHH
Q 005719 102 LSAYGDTKLVMKGITHGACDYLLKPVRIE--ELKNIWQHVIR 141 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA~DYLlKPvs~e--EL~~i~q~Vlr 141 (681)
+++..+.....+++..||.+|+.||.... .+..+++.++.
T Consensus 85 lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~ 126 (665)
T PRK13558 85 VPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVP 126 (665)
T ss_pred EECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhh
Confidence 99999999999999999999999997543 55566655554
No 71
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.26 E-value=6e-11 Score=120.51 Aligned_cols=119 Identities=13% Similarity=0.127 Sum_probs=97.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHH-HHHh-ccCCCcE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLL-EHVG-LEMDLPV 99 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~-Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elL-e~I~-~~~dlPV 99 (681)
..+|++|||+|..+..|+.+|+. ++. +..+.++.++++.+. .|||||+|+.||+++|++++ +.++ ..+.++|
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~~-~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~G~~~~~~~i~~~~p~~~v 84 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLKQ-SLAITGKLHNIQRSLDDIS----SGSIILLDMMEADKKLIHYWQDTLSRKNNNIKI 84 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHHH-hCCCeEEEcCHHHhhccCC----CCCEEEEECCCCCccHHHHHHHHHHHhCCCCcE
Confidence 45699999999999999999985 454 446778888887643 38999999999999999997 5564 4578999
Q ss_pred EEEEcCCChHHHHHHHh--cCCcEEEeCCCChHHHHHHHHHHHHHhhcCCc
Q 005719 100 IMLSAYGDTKLVMKGIT--HGACDYLLKPVRIEELKNIWQHVIRRKKVGPK 148 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~--~GA~DYLlKPvs~eEL~~i~q~Vlrrkk~~~k 148 (681)
|++|...+ ....++. .||.+|+.|+.+.++|.+.++.++++..+...
T Consensus 85 vvlt~~~~--~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~~~~~ 133 (216)
T PRK10100 85 LLLNTPED--YPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYFTQ 133 (216)
T ss_pred EEEECCch--hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCcccCH
Confidence 99999876 3445555 49999999999999999999999877655443
No 72
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.24 E-value=2.1e-10 Score=110.60 Aligned_cols=119 Identities=20% Similarity=0.368 Sum_probs=104.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRAC-QYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPV 99 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~-gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPV 99 (681)
..+|||||+++..+..+..+|... ++.++ .+.++.+++..+... .||+||+|+.+++++|+++++.++. .+..|+
T Consensus 6 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvl~d~~l~~~~~~~~~~~l~~~~~~~~v 83 (216)
T PRK10651 6 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESL--DPDLILLDLNMPGMNGLETLDKLREKSLSGRI 83 (216)
T ss_pred ceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcE
Confidence 368999999999999999999764 56544 688999999988653 5999999999999999999999853 467899
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
|+++...+......++..|+++|+.||++.++|...++.+++..
T Consensus 84 i~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~ 127 (216)
T PRK10651 84 VVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGE 127 (216)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999987654
No 73
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.20 E-value=1.6e-10 Score=116.69 Aligned_cols=107 Identities=12% Similarity=0.129 Sum_probs=90.2
Q ss_pred HHHHHHHHHh---CCCeEEEECCHHHHHHHHHhcCCCceEEE---EeCCCCCCCHHHHHHHHh-ccCCCcEEEEEcCCCh
Q 005719 36 LKVLENFLRA---CQYEVTVTNQAVTALKMLRENRNNFDLVI---SDVHMPDMDGFKLLEHVG-LEMDLPVIMLSAYGDT 108 (681)
Q Consensus 36 r~iL~~~Le~---~gy~Vt~as~a~eALe~L~e~~~~pDLVL---lDV~MPdmDG~elLe~I~-~~~dlPVImLSa~~d~ 108 (681)
|..++.+|.. .+|.|..+.++.++++.+.. ..||+|| +|+.||+++|+++++.|+ ..+.+|||++|+.++.
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~--~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~ 80 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSR--ISFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIE 80 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhcc--CCCCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCCH
Confidence 5677888865 46667789999999998764 3589998 788999999999999994 5678999999998877
Q ss_pred HHHHHHH-hcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 109 KLVMKGI-THGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 109 e~v~kAl-~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
..+.+++ +.||.+||.||.+.++|...++.++++..
T Consensus 81 ~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~ 117 (207)
T PRK11475 81 ARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVR 117 (207)
T ss_pred HHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCc
Confidence 7666666 79999999999999999999999987654
No 74
>PRK09191 two-component response regulator; Provisional
Probab=99.18 E-value=4.3e-10 Score=114.11 Aligned_cols=116 Identities=21% Similarity=0.388 Sum_probs=98.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhccCCCcEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPD-MDGFKLLEHVGLEMDLPVI 100 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPd-mDG~elLe~I~~~~dlPVI 100 (681)
..+||||||++..+..+...|+..++.+. .+.++.++++.+.. ..||+||+|+.||+ ++|+++++.+.....+|||
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~--~~~dlvi~d~~~~~~~~g~e~l~~l~~~~~~pii 214 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKK--TRPGLILADIQLADGSSGIDAVNDILKTFDVPVI 214 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhc--cCCCEEEEecCCCCCCCHHHHHHHHHHhCCCCEE
Confidence 35799999999999999999998899887 68899999998865 35999999999995 8999999998644489999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
+++...+.... +...++.+|+.||++.++|..++++++..
T Consensus 215 ~ls~~~~~~~~--~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 215 FITAFPERLLT--GERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred EEeCCCcHHHH--HHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 99987665433 34567889999999999999999887654
No 75
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.17 E-value=3.2e-10 Score=135.02 Aligned_cols=117 Identities=21% Similarity=0.239 Sum_probs=106.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVIM 101 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVIm 101 (681)
+.+||||||++..+..+...|+..||+|+.+.++.++++.+......||+||+ .||+++|+++++.|+ ..+.+|||+
T Consensus 697 ~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~~~~ipIIv 774 (828)
T PRK13837 697 GETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAAAPTLPIIL 774 (828)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 57899999999999999999999999999999999999998765445899999 799999999999995 457899999
Q ss_pred EEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 102 LSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
++.........+++..| ++||.||++.++|..++++++++
T Consensus 775 ls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~ 814 (828)
T PRK13837 775 GGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALAT 814 (828)
T ss_pred EeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHcc
Confidence 99999989999999999 99999999999999999988764
No 76
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.15 E-value=5.4e-10 Score=112.51 Aligned_cols=117 Identities=10% Similarity=0.064 Sum_probs=95.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHhcCCCceEEEEeCC--CCCCCHHHHHHHHh-ccCCC
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQY---EVTVTNQAVTALKMLRENRNNFDLVISDVH--MPDMDGFKLLEHVG-LEMDL 97 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy---~Vt~as~a~eALe~L~e~~~~pDLVLlDV~--MPdmDG~elLe~I~-~~~dl 97 (681)
|.||||||++..+..++.+|+..++ .|..+.++.++++.+.. ..||+||+|+. |+.++|.++++.|+ ..+.+
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~--~~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~ 78 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDS--LRPSVVFINEDCFIHDASNSQRIKQIINQHPNT 78 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhc--cCCCEEEEeCcccCCCCChHHHHHHHHHHCCCC
Confidence 4699999999999999999987553 33467899999988764 35899999966 88889999999995 56789
Q ss_pred cEEEEEcCCChHHHHHHHhcCCcE-EEeCCCChHHHHHHHHHHHHHh
Q 005719 98 PVIMLSAYGDTKLVMKGITHGACD-YLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 98 PVImLSa~~d~e~v~kAl~~GA~D-YLlKPvs~eEL~~i~q~Vlrrk 143 (681)
+||++|+.++..... ++..|+.. |+.|+.+.++|..+++.+.++.
T Consensus 79 ~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~ 124 (207)
T PRK15411 79 LFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKE 124 (207)
T ss_pred eEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCC
Confidence 999999987766543 55555544 8899999999999999886543
No 77
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.12 E-value=5.3e-10 Score=111.17 Aligned_cols=120 Identities=25% Similarity=0.369 Sum_probs=101.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVI 100 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVI 100 (681)
..+|||++||++..+..+...|...||+++ .+.++.++.+..... .||+||+|+.||..|-.+.+.........|||
T Consensus 4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~--~pDvVildie~p~rd~~e~~~~~~~~~~~piv 81 (194)
T COG3707 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERL--QPDVVILDIEMPRRDIIEALLLASENVARPIV 81 (194)
T ss_pred cccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHhc--CCCEEEEecCCCCccHHHHHHHhhcCCCCCEE
Confidence 347999999999999999999998899876 556677777776643 59999999999999955555555566788999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
++++++++..+.++++.||..||+||++...|.-++.-+..+.
T Consensus 82 ~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf 124 (194)
T COG3707 82 ALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRF 124 (194)
T ss_pred EEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999988887665543
No 78
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.10 E-value=1.7e-09 Score=88.56 Aligned_cols=111 Identities=38% Similarity=0.590 Sum_probs=97.8
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEEcC
Q 005719 27 LAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVIMLSAY 105 (681)
Q Consensus 27 LIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVImLSa~ 105 (681)
|++++++..+..+...|...++.+..+.+..+++..+... .+|+|++|..+++.+|+++++.+.. .+.+|+|+++..
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~ii~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 78 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEE--KPDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAH 78 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHhC--CCCEEEEecCCCCCchHHHHHHHHHhCCCCCEEEEEec
Confidence 4789999999999999998899999999999999888643 5999999999999999999998854 467899999988
Q ss_pred CChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 005719 106 GDTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139 (681)
Q Consensus 106 ~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~V 139 (681)
.......+++..|+.+|+.||+..++|...++++
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 79 GDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 7788888999999999999999999998887653
No 79
>PRK13557 histidine kinase; Provisional
Probab=99.05 E-value=2.7e-09 Score=118.09 Aligned_cols=119 Identities=24% Similarity=0.374 Sum_probs=106.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhc-cCCCcE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPD-MDGFKLLEHVGL-EMDLPV 99 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPd-mDG~elLe~I~~-~~dlPV 99 (681)
.+.+||||++++..+..+..+|+..+|.+..+.++.++++.+... ..||+||+|..|++ ++|+++++.|+. .+.+||
T Consensus 414 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~~~~~~~~~l~~~~~~~~i 492 (540)
T PRK13557 414 GTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSH-PEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKV 492 (540)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcC-CCceEEEEeccCCCCCCHHHHHHHHHHhCCCCcE
Confidence 457899999999999999999998999999999999999988532 35999999999997 999999999964 567999
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
|+++..........++..|+.+|+.||+..++|...++.++.
T Consensus 493 i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 534 (540)
T PRK13557 493 LLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLD 534 (540)
T ss_pred EEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhc
Confidence 999999888888889999999999999999999999888764
No 80
>PRK10693 response regulator of RpoS; Provisional
Probab=98.96 E-value=4.9e-09 Score=111.25 Aligned_cols=89 Identities=30% Similarity=0.490 Sum_probs=78.7
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCC-Ch
Q 005719 52 VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPV-RI 129 (681)
Q Consensus 52 ~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPv-s~ 129 (681)
.+.++.+|++.+.. ..||+||+|+.||+++|+++++.++. ...+|||++|+..+.+.+.++++.||+||+.||+ +.
T Consensus 2 ~a~~g~~al~~l~~--~~pDlVL~D~~mp~~~Gle~~~~ir~~~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~~~ 79 (303)
T PRK10693 2 LAANGVDALELLGG--FTPDLIICDLAMPRMNGIEFVEHLRNRGDQTPVLVISATENMADIAKALRLGVQDVLLKPVKDL 79 (303)
T ss_pred EeCCHHHHHHHHhc--CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCcH
Confidence 46788999998875 35999999999999999999999964 4679999999999999999999999999999999 58
Q ss_pred HHHHHHHHHHHHH
Q 005719 130 EELKNIWQHVIRR 142 (681)
Q Consensus 130 eEL~~i~q~Vlrr 142 (681)
++|..++.++++.
T Consensus 80 ~~L~~~i~~~l~~ 92 (303)
T PRK10693 80 NRLREMVFACLYP 92 (303)
T ss_pred HHHHHHHHHHhhh
Confidence 9999988887654
No 81
>PRK15029 arginine decarboxylase; Provisional
Probab=98.83 E-value=2.9e-08 Score=116.93 Aligned_cols=117 Identities=15% Similarity=0.182 Sum_probs=90.7
Q ss_pred cEEEEEeCCHH--------HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH----HHHHHH
Q 005719 24 MRVLAVDDDPT--------CLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF----KLLEHV 91 (681)
Q Consensus 24 mRVLIVDDD~~--------~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~----elLe~I 91 (681)
|||||||||.. .++.|+..|+..||+|.++.++.+|++.+... ..||+||+|+.||+++|+ ++++.|
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd~dG~~~~~ell~~I 79 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCCCccchhHHHHHHHH
Confidence 68999999995 69999999999999999999999999999652 359999999999999998 899999
Q ss_pred hc-cCCCcEEEEEcCCC--hHHHHHHHhcCCcEEEeCCCChHH-HHHHHHHHHHH
Q 005719 92 GL-EMDLPVIMLSAYGD--TKLVMKGITHGACDYLLKPVRIEE-LKNIWQHVIRR 142 (681)
Q Consensus 92 ~~-~~dlPVImLSa~~d--~e~v~kAl~~GA~DYLlKPvs~eE-L~~i~q~Vlrr 142 (681)
+. ..++|||++|+..+ ....... -.-+..|+.+--+..+ +...+...+++
T Consensus 80 R~~~~~iPIIlLTar~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (755)
T PRK15029 80 HERQQNVPVFLLGDREKALAAMDRDL-LELVDEFAWILEDTADFIAGRAVAAMTR 133 (755)
T ss_pred HhhCCCCCEEEEEcCCcccccCCHHH-HHhhheEEEecCCCHHHHHHHHHHHHHH
Confidence 74 46899999999885 2222222 2335667777655444 44445555443
No 82
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.74 E-value=6.3e-08 Score=100.34 Aligned_cols=115 Identities=28% Similarity=0.468 Sum_probs=96.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRAC-QYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVI 100 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~-gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVI 100 (681)
++|+++||++..+..|+.++... .+++. .+.++.++++.+... .+|++++|+.||+++|+++...++. .+..+|+
T Consensus 2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fldI~~~~~~G~ela~~i~~~~~~~~Iv 79 (244)
T COG3279 2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGL--RPDLVFLDIAMPDINGIELAARIRKGDPRPAIV 79 (244)
T ss_pred CcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhcc--CCCeEEEeeccCccchHHHHHHhcccCCCCeEE
Confidence 68999999999999999999742 23332 577888999988755 6999999999999999999999975 4566788
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
++|+++ +.+..+++..|.||+.||+..+.|...+..+.+.
T Consensus 80 fvt~~~--~~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 80 FVTAHD--EYAVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred EEEehH--HHHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 999885 4566778899999999999999999999887654
No 83
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.17 E-value=1.9e-05 Score=94.27 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=94.8
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH-hc--cCC
Q 005719 20 FPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHV-GL--EMD 96 (681)
Q Consensus 20 fP~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I-~~--~~d 96 (681)
...|.+|+|+||++..+..+..+|+.+|+.|+.+.+..+ +. ...||++++|+.||++++...+... .. ...
T Consensus 533 ~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~--~~~~d~il~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (919)
T PRK11107 533 CLAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----LP--EAHYDILLLGLPVTFREPLTMLHERLAKAKSMT 606 (919)
T ss_pred ccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----hc--cCCCCEEEecccCCCCCCHHHHHHHHHhhhhcC
Confidence 356789999999999999999999999999999888777 22 2459999999999998776655443 22 234
Q ss_pred CcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 005719 97 LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140 (681)
Q Consensus 97 lPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vl 140 (681)
.++|+++..........+.+.|+++|+.||+...+|...+....
T Consensus 607 ~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 607 DFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred CcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 56888888888888999999999999999999999988776543
No 84
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=97.73 E-value=3.5e-05 Score=86.08 Aligned_cols=93 Identities=33% Similarity=0.488 Sum_probs=80.9
Q ss_pred CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCC
Q 005719 48 YEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPV 127 (681)
Q Consensus 48 y~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPv 127 (681)
|+|.++..+..++..+.. ..+|++++|+.||+|+|+++.+.++..+.. |+++|+..+.....++++.||+++|.||+
T Consensus 13 ~~v~~a~~g~~~l~~~~~--~~~~~~lld~~m~~~~~~~~~~~lk~~~~~-~v~~t~~~~~~~~~~~~~~~~~~~l~~~~ 89 (435)
T COG3706 13 KEVATAKKGLIALAILLD--HKPDYKLLDVMMPGMDGFELCRRLKAEPAT-VVMVTALDDSAPRVRGLKAGADDFLTKPV 89 (435)
T ss_pred hhhhhccchHHHHHHHhc--CCCCeEEeecccCCcCchhHHHHHhcCCcc-eEEEEecCCCCcchhHHhhhhhhhccCCC
Confidence 567778889999998875 459999999999999999999999766555 89999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHh
Q 005719 128 RIEELKNIWQHVIRRK 143 (681)
Q Consensus 128 s~eEL~~i~q~Vlrrk 143 (681)
....+......+.+.+
T Consensus 90 ~~~~~~~r~~~l~~~k 105 (435)
T COG3706 90 NDSQLFLRAKSLVRLK 105 (435)
T ss_pred ChHHHHHhhhhhccch
Confidence 9998888877766543
No 85
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.31 E-value=0.002 Score=59.19 Aligned_cols=106 Identities=13% Similarity=0.168 Sum_probs=74.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH-hccCCCcEEEEE
Q 005719 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHV-GLEMDLPVIMLS 103 (681)
Q Consensus 25 RVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I-~~~~dlPVImLS 103 (681)
||||||||...+..|+.+|+=.|+++..+..... ...... ...+.+++-..-.. ...+.++.+ +..+.+|||++.
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~--~~~~~~~v~~g~~~-~~~~~l~~l~~~~~~~Pvlllg 76 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWS--SPWEACAVILGSCS-KLAELLKELLKWAPHIPVLLLG 76 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhh--cCCcEEEEEecCch-hHHHHHHHHHhhCCCCCEEEEC
Confidence 7999999999999999999989999998886443 222222 23444444332222 445667766 577899999998
Q ss_pred cCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 005719 104 AYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139 (681)
Q Consensus 104 a~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~V 139 (681)
........ ..+..-|-.|++..+|...++++
T Consensus 77 ~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 77 EHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred CCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 77665111 11556688999999999988875
No 86
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.30 E-value=0.0019 Score=45.67 Aligned_cols=55 Identities=40% Similarity=0.660 Sum_probs=47.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCC
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMP 80 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MP 80 (681)
++|+++++++..+..+...+...++.+..+.+..+++..+... .+|+|++|..++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEE--KPDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhc--CCCEEEEeccCC
Confidence 4799999999999999999998899999999999998877643 489999998653
No 87
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=96.26 E-value=0.0068 Score=47.39 Aligned_cols=48 Identities=35% Similarity=0.403 Sum_probs=41.3
Q ss_pred ccccchhhHHHHHHHHHHhcCCCCChhhHHhhcCCCCCcHHHHHHhhhhhH
Q 005719 214 RVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFR 264 (681)
Q Consensus 214 r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~v~glt~~~v~ShLqkyr 264 (681)
|-.||++=+.+|++||.+.|.+ .-++|.+.|+ .+-|..++.+|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKD--NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCc--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 4679999999999999999944 5789999998 8999999999999885
No 88
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=95.71 E-value=0.28 Score=45.60 Aligned_cols=110 Identities=15% Similarity=0.059 Sum_probs=76.9
Q ss_pred EEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCCCC--HHHHHHHHhcc-
Q 005719 25 RVLAV----DDDPTCLKVLENFLRACQYEVTVTN---QAVTALKMLRENRNNFDLVISDVHMPDMD--GFKLLEHVGLE- 94 (681)
Q Consensus 25 RVLIV----DDD~~~r~iL~~~Le~~gy~Vt~as---~a~eALe~L~e~~~~pDLVLlDV~MPdmD--G~elLe~I~~~- 94 (681)
||++. |.+..-...+..+|+..||+|.... ...+.++.+.+. .+|+|.+...+...- --++++.++..
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~--~~d~V~iS~~~~~~~~~~~~~~~~L~~~~ 78 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQE--DVDVIGLSSLSGGHMTLFPEVIELLRELG 78 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEcccchhhHHHHHHHHHHHHhcC
Confidence 45555 6677777778888899999998655 366777777654 499999988775421 23445555443
Q ss_pred CCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHH
Q 005719 95 MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIW 136 (681)
Q Consensus 95 ~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~ 136 (681)
+....|++......+...++.+.|++.|+..--..++....+
T Consensus 79 ~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~ 120 (122)
T cd02071 79 AGDILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKI 120 (122)
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHH
Confidence 434456666555566678888999999999888877765544
No 89
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.45 E-value=0.54 Score=45.07 Aligned_cols=116 Identities=15% Similarity=0.025 Sum_probs=83.1
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHh
Q 005719 22 IGMRVLAV----DDDPTCLKVLENFLRACQYEVTVTN---QAVTALKMLRENRNNFDLVISDVHMPDM--DGFKLLEHVG 92 (681)
Q Consensus 22 ~GmRVLIV----DDD~~~r~iL~~~Le~~gy~Vt~as---~a~eALe~L~e~~~~pDLVLlDV~MPdm--DG~elLe~I~ 92 (681)
++.+||+. |.+..-...+..+|+..||+|+... ...+.++.+.+. .+|+|.+...|... .-.++++.++
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~--~~d~V~lS~~~~~~~~~~~~~~~~L~ 79 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIET--DADAILVSSLYGHGEIDCRGLREKCI 79 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEcCccccCHHHHHHHHHHHH
Confidence 35678888 8888888889999999999999765 456777777654 59999999888742 2345566664
Q ss_pred cc-C-CCcEEEEEcCC------ChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 005719 93 LE-M-DLPVIMLSAYG------DTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140 (681)
Q Consensus 93 ~~-~-dlPVImLSa~~------d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vl 140 (681)
.. . +++ |++.... ..+...++.+.|++..+...-..+++...++..+
T Consensus 80 ~~~~~~~~-i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 80 EAGLGDIL-LYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDL 134 (137)
T ss_pred hcCCCCCe-EEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 33 3 444 4444332 3455677889999999988888888887776654
No 90
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=95.43 E-value=0.018 Score=70.31 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=44.7
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCC
Q 005719 19 KFPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHM 79 (681)
Q Consensus 19 ~fP~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~M 79 (681)
....|.+||||||++.++..+..+|++.|++|..+.+.. ....|||||+|.++
T Consensus 685 ~~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~~--------~~~~~Dlvl~D~~~ 737 (894)
T PRK10618 685 KLLDGVTVLLDITSEEVRKIVTRQLENWGATCITPDERL--------ISQEYDIFLTDNPS 737 (894)
T ss_pred ccCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCccc--------cCCCCCEEEECCCC
Confidence 445789999999999999999999999999999887531 12459999999984
No 91
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=95.07 E-value=0.31 Score=44.61 Aligned_cols=94 Identities=12% Similarity=-0.007 Sum_probs=63.6
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHhccCC-CcEEEEE
Q 005719 30 DDDPTCLKVLENFLRACQYEVTVTN---QAVTALKMLRENRNNFDLVISDVHMPDM--DGFKLLEHVGLEMD-LPVIMLS 103 (681)
Q Consensus 30 DDD~~~r~iL~~~Le~~gy~Vt~as---~a~eALe~L~e~~~~pDLVLlDV~MPdm--DG~elLe~I~~~~d-lPVImLS 103 (681)
|.+..-...+..+|+..||+|.... ...+.++.+.+. .||+|.+...+... ...++++.++.... -+.|++.
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~--~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEE--DADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 6677777888899999999997643 356667777654 49999998876542 34556666754432 3445566
Q ss_pred cCCChHHHHHHHhcCCcEEEeC
Q 005719 104 AYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 104 a~~d~e~v~kAl~~GA~DYLlK 125 (681)
+..-......+.+.|++.|+..
T Consensus 88 G~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 88 GAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred CCCCChhHHHHHHcCCeEEECC
Confidence 5554444457788999776653
No 92
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=94.56 E-value=1.4 Score=42.02 Aligned_cols=116 Identities=12% Similarity=0.044 Sum_probs=77.3
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCC-CCHH-HHHHHHhcc
Q 005719 24 MRVLAV----DDDPTCLKVLENFLRACQYEVTVTN---QAVTALKMLRENRNNFDLVISDVHMPD-MDGF-KLLEHVGLE 94 (681)
Q Consensus 24 mRVLIV----DDD~~~r~iL~~~Le~~gy~Vt~as---~a~eALe~L~e~~~~pDLVLlDV~MPd-mDG~-elLe~I~~~ 94 (681)
.||++. |-+..-...+..+|+..||+|.... +..+.++.+.+. .+|+|.+...+.. +..+ ++++.++..
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~--~adii~iSsl~~~~~~~~~~~~~~L~~~ 80 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEA--DVHVVGVSSLAGGHLTLVPALRKELDKL 80 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHc--CCCEEEEcCchhhhHHHHHHHHHHHHhc
Confidence 455554 5666667778889999999998543 577888877654 4899998776633 2222 234445432
Q ss_pred -CCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 95 -MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 95 -~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
.....|++.+.-..+...+..++|+++|+..--+..++...+...++
T Consensus 81 g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 81 GRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKLR 128 (132)
T ss_pred CCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 22334555544445567778899999999888888887777666543
No 93
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=94.35 E-value=0.4 Score=44.31 Aligned_cols=106 Identities=15% Similarity=0.176 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHh-ccCCCcEEEEEcCCChHHH
Q 005719 35 CLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPD--MDGFKLLEHVG-LEMDLPVIMLSAYGDTKLV 111 (681)
Q Consensus 35 ~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPd--mDG~elLe~I~-~~~dlPVImLSa~~d~e~v 111 (681)
....|...|+..|++|+.+.+..+++..++.. ..+..|++++. ++ ....++++.++ ....+||.+++.....+.+
T Consensus 5 ~~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~-~~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~~~~l 82 (115)
T PF03709_consen 5 ASRELAEALEQRGREVVDADSTDDALAIIESF-TDIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVFLLAERDTTEDL 82 (115)
T ss_dssp HHHHHHHHHHHTTTEEEEESSHHHHHHHHHCT-TTEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEEEESCCHHHCC
T ss_pred HHHHHHHHHHHCCCEEEEeCChHHHHHHHHhC-CCeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEEEecCCCcccC
Confidence 34567778887899999999999999999864 46899999986 21 12456777774 5689999999886544433
Q ss_pred HHHHhcCCcEEEeCCCCh-HHHHHHHHHHHHH
Q 005719 112 MKGITHGACDYLLKPVRI-EELKNIWQHVIRR 142 (681)
Q Consensus 112 ~kAl~~GA~DYLlKPvs~-eEL~~i~q~Vlrr 142 (681)
-..+-.-+++|+...-+- +.+...+..++++
T Consensus 83 ~~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~~ 114 (115)
T PF03709_consen 83 PAEVLGEVDGFIWLFEDTAEFIARRIEAAARR 114 (115)
T ss_dssp CHHHHCCESEEEETTTTTHHHHHHHHHHHHHH
T ss_pred CHHHHhhccEEEEecCCCHHHHHHHHHHHHHh
Confidence 333445567888776544 4455566665543
No 94
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=91.65 E-value=1.7 Score=52.15 Aligned_cols=115 Identities=18% Similarity=0.142 Sum_probs=74.4
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCC
Q 005719 24 MRVLAVDDDP-T-----CLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMD 96 (681)
Q Consensus 24 mRVLIVDDD~-~-----~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~d 96 (681)
|+|+||+++. . -.+.|.+.|++.||+|..+.+..+++..++. ...+..|++++.-. ..++++.++ ...+
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 76 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEH-NPRICGVIFDWDEY---SLDLCSDINQLNEY 76 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhc-ccceeEEEEecccc---hHHHHHHHHHhCCC
Confidence 5788888774 1 1455677788889999999999999998874 45788999985332 355777774 5678
Q ss_pred CcEEEEEcCCChHHHHHHHhcCCcEEEeCCCC-hHHHHHHHHHHHHH
Q 005719 97 LPVIMLSAYGDTKLVMKGITHGACDYLLKPVR-IEELKNIWQHVIRR 142 (681)
Q Consensus 97 lPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs-~eEL~~i~q~Vlrr 142 (681)
+||+++........+-...-.-+..|+..-.+ .+.+...+...+++
T Consensus 77 ~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~ 123 (713)
T PRK15399 77 LPLYAFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTNE 123 (713)
T ss_pred CCEEEEcCccccccCChhHhhhcceeeeeccCCHHHHHHHHHHHHHH
Confidence 99999876543332222222334556554433 34444545555443
No 95
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=91.51 E-value=3.5 Score=37.23 Aligned_cols=94 Identities=19% Similarity=0.244 Sum_probs=58.2
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEeCCC-CCC-CHHHHHHHHhcc-CCCcEEEEE
Q 005719 30 DDDPTCLKVLENFLRACQYEVTVTN---QAVTALKMLRENRNNFDLVISDVHM-PDM-DGFKLLEHVGLE-MDLPVIMLS 103 (681)
Q Consensus 30 DDD~~~r~iL~~~Le~~gy~Vt~as---~a~eALe~L~e~~~~pDLVLlDV~M-Pdm-DG~elLe~I~~~-~dlPVImLS 103 (681)
+-.+.-...+..+|++.||+|.... ...+..+.+.+. .||+|.+.+.+ +.. ...++++.++.. ++++|| +.
T Consensus 11 ~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~--~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv-~G 87 (121)
T PF02310_consen 11 EVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAE--RPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIV-VG 87 (121)
T ss_dssp SSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHT--TCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEE-EE
T ss_pred cchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcC--CCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEE-EE
Confidence 4557778889999999999998773 345666666654 49999999844 333 235566666543 445554 54
Q ss_pred cCCChHHHHHHHh--cCCcEEEeCC
Q 005719 104 AYGDTKLVMKGIT--HGACDYLLKP 126 (681)
Q Consensus 104 a~~d~e~v~kAl~--~GA~DYLlKP 126 (681)
+..-...-...++ .|+|..+.-.
T Consensus 88 G~~~t~~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 88 GPHATADPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp ESSSGHHHHHHHHHHHTSEEEEEET
T ss_pred CCchhcChHHHhccCcCcceecCCC
Confidence 4443334444454 5665555443
No 96
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=90.72 E-value=2 Score=51.59 Aligned_cols=115 Identities=16% Similarity=0.203 Sum_probs=72.5
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCC
Q 005719 24 MRVLAVDDDP-T-----CLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMD 96 (681)
Q Consensus 24 mRVLIVDDD~-~-----~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~d 96 (681)
|+||||+++. . -.+.|.+.|++.||+|..+.+..+++..++. ...+..|++|..- . ..++++.++ ...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~ 76 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIEN-NARLCGVIFDWDK--Y-NLELCEEISKMNEN 76 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc-ccceeEEEEecch--h-hHHHHHHHHHhCCC
Confidence 5788887662 1 2456777788889999999999999998874 4568899998532 1 244777774 5578
Q ss_pred CcEEEEEcCCChHHHHHHHhcCCcEEEeCCC-ChHHHHHHHHHHHHH
Q 005719 97 LPVIMLSAYGDTKLVMKGITHGACDYLLKPV-RIEELKNIWQHVIRR 142 (681)
Q Consensus 97 lPVImLSa~~d~e~v~kAl~~GA~DYLlKPv-s~eEL~~i~q~Vlrr 142 (681)
+||+++........+-...-.-++.|+..-- +.+.+...+.+.+++
T Consensus 77 ~Pv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~i~~~~~~ 123 (714)
T PRK15400 77 LPLYAFANTYSTLDVSLNDLRLQVSFFEYALGAADDIANKIKQTTDE 123 (714)
T ss_pred CCEEEEccccccccCChHHhhhccceeeeccCCHHHHHHHHHHHHHH
Confidence 9999987654322221112222345554332 344554545555443
No 97
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=90.66 E-value=0.67 Score=49.80 Aligned_cols=84 Identities=17% Similarity=0.121 Sum_probs=54.8
Q ss_pred CCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE-EcCCChHHHHHHHhcCCcEEEeC
Q 005719 47 QYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIML-SAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 47 gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImL-Sa~~d~e~v~kAl~~GA~DYLlK 125 (681)
|.+++++.+..++-+.. ..-.+|++|..+-. .+++.. .-....||++ ....+.+....+++.||.|||.+
T Consensus 1 ~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~----~~~~~~-~p~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~ 71 (322)
T TIGR03815 1 GVELDVAPDPEAARRAW----ARAPLVLVDADMAE----ACAAAG-LPRRRRVVLVGGGEPGGALWRAAAAVGAEHVAVL 71 (322)
T ss_pred CCceEEccCchhhhhcc----ccCCeEEECchhhh----HHHhcc-CCCCCCEEEEeCCCCCHHHHHHHHHhChhheeeC
Confidence 45566666655553332 34679999864311 111111 1112235544 44567889999999999999999
Q ss_pred CCChHHHHHHHHHH
Q 005719 126 PVRIEELKNIWQHV 139 (681)
Q Consensus 126 Pvs~eEL~~i~q~V 139 (681)
|++.++|...+.++
T Consensus 72 P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 72 PEAEGWLVELLADL 85 (322)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999888776
No 98
>smart00426 TEA TEA domain.
Probab=89.39 E-value=0.4 Score=40.94 Aligned_cols=48 Identities=27% Similarity=0.367 Sum_probs=30.6
Q ss_pred cccchhhHHHHHHHHHHhcCCCCChhhHHhh---cC-----------CCC--CcHHHHHHhhhh
Q 005719 215 VVWTPELHRKFVGAVNQLGVDKAVPKKILDL---MN-----------VEG--LTRENVASHLQK 262 (681)
Q Consensus 215 ~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~---m~-----------v~g--lt~~~v~ShLqk 262 (681)
-+|.++|-.-|++|+...--...-+-++... .+ ..| -|+.+|+||+|.
T Consensus 4 ~vWp~~lE~Af~~aL~~~~~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv 67 (68)
T smart00426 4 GVWSPDIEQAFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV 67 (68)
T ss_pred CcCcHHHHHHHHHHHHHcCccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence 3799999999999999872111111122221 11 133 389999999994
No 99
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=89.34 E-value=4.9 Score=42.47 Aligned_cols=111 Identities=20% Similarity=0.211 Sum_probs=71.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHH------hCCCeEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCC---------CCCHHH
Q 005719 24 MRVLAVDDDPTCLKVLENFLR------ACQYEVT-VTN-QAVTALKMLRENRNNFDLVISDVHMP---------DMDGFK 86 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le------~~gy~Vt-~as-~a~eALe~L~e~~~~pDLVLlDV~MP---------dmDG~e 86 (681)
+|+=|+.|+.....-+.+.++ +.||.|. +|. +...|-++... .+++| || +..-.+
T Consensus 94 iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~---G~~~v-----mPlg~pIGsg~Gi~~~~ 165 (248)
T cd04728 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDA---GCAAV-----MPLGSPIGSGQGLLNPY 165 (248)
T ss_pred EEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc---CCCEe-----CCCCcCCCCCCCCCCHH
Confidence 455566655433333333222 3399888 554 45555444432 46777 66 111257
Q ss_pred HHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEe-----CCCChHHHHHHHHHHHHH
Q 005719 87 LLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLL-----KPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 87 lLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLl-----KPvs~eEL~~i~q~Vlrr 142 (681)
+++.|....++|||+=..-...+.+.++++.||+.+++ |.-++..+...+...+..
T Consensus 166 ~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 166 NLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEA 226 (248)
T ss_pred HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHH
Confidence 78888666789999888889999999999999999865 544566666666666543
No 100
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=89.01 E-value=3.3 Score=36.91 Aligned_cols=90 Identities=12% Similarity=0.111 Sum_probs=59.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005719 25 RVLAVDDDPTCLKVLENFLRACQYEVTVT---NQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIM 101 (681)
Q Consensus 25 RVLIVDDD~~~r~iL~~~Le~~gy~Vt~a---s~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVIm 101 (681)
+||||.........++..+++.|+..... .........+...-...|+||+=+..-.=+-...++......++|+++
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 58999998888899999999999998888 222222222222223479998866655555566666666678899997
Q ss_pred EEcCCChHHHHHHH
Q 005719 102 LSAYGDTKLVMKGI 115 (681)
Q Consensus 102 LSa~~d~e~v~kAl 115 (681)
.-.. ....+.+++
T Consensus 81 ~~~~-~~~~l~~~l 93 (97)
T PF10087_consen 81 SRSR-GVSSLERAL 93 (97)
T ss_pred ECCC-CHHHHHHHH
Confidence 7533 333444444
No 101
>PRK00208 thiG thiazole synthase; Reviewed
Probab=88.58 E-value=4.1 Score=43.08 Aligned_cols=111 Identities=19% Similarity=0.178 Sum_probs=72.0
Q ss_pred cEEEEEeCCHHHHHHHHHH------HHhCCCeEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCC---------CCCHHH
Q 005719 24 MRVLAVDDDPTCLKVLENF------LRACQYEVT-VTN-QAVTALKMLRENRNNFDLVISDVHMP---------DMDGFK 86 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~------Le~~gy~Vt-~as-~a~eALe~L~e~~~~pDLVLlDV~MP---------dmDG~e 86 (681)
+|+=|+.|+.....-+.+. |-+.||.|. +|. +...|-++... .+++| || +..-.+
T Consensus 94 iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~---G~~~v-----mPlg~pIGsg~gi~~~~ 165 (250)
T PRK00208 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEA---GCAAV-----MPLGAPIGSGLGLLNPY 165 (250)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHc---CCCEe-----CCCCcCCCCCCCCCCHH
Confidence 4666666554333322222 223499888 555 45555444432 47777 66 111157
Q ss_pred HHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEe-----CCCChHHHHHHHHHHHHH
Q 005719 87 LLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLL-----KPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 87 lLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLl-----KPvs~eEL~~i~q~Vlrr 142 (681)
+++.|....++|||+=..-...+.+.++++.||+.+++ |.-++..+...+...+..
T Consensus 166 ~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 166 NLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred HHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHH
Confidence 78888665789999988889999999999999999864 544566777777666543
No 102
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=88.55 E-value=10 Score=36.45 Aligned_cols=110 Identities=10% Similarity=0.021 Sum_probs=72.6
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHH-HHHHHHhcc-CCCcEEEEE
Q 005719 30 DDDPTCLKVLENFLRACQYEVTVT---NQAVTALKMLRENRNNFDLVISDVHMPD-MDGF-KLLEHVGLE-MDLPVIMLS 103 (681)
Q Consensus 30 DDD~~~r~iL~~~Le~~gy~Vt~a---s~a~eALe~L~e~~~~pDLVLlDV~MPd-mDG~-elLe~I~~~-~dlPVImLS 103 (681)
|-+..-..++..+|+..||+|+-. ....+.++.+.+. .+|+|.+...|-. +..+ ++.+.++.. ..-++|++.
T Consensus 12 D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~--~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivG 89 (134)
T TIGR01501 12 DCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIET--KADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVG 89 (134)
T ss_pred ChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEec
Confidence 444555667888999999999854 4567777777654 5999999887753 2223 344455432 223445565
Q ss_pred cC-----CChH-HHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 104 AY-----GDTK-LVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 104 a~-----~d~e-~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
.. .+.. ...++.+.|++..+...-..+++.+.+++.++
T Consensus 90 G~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 90 GNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred CCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 53 1111 24467889999888888888888888877653
No 103
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=86.96 E-value=6.3 Score=40.51 Aligned_cols=104 Identities=14% Similarity=0.158 Sum_probs=69.3
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCC-CCH-HHHHHHHh
Q 005719 22 IGMRVLAV----DDDPTCLKVLENFLRACQYEVTVTN---QAVTALKMLRENRNNFDLVISDVHMPD-MDG-FKLLEHVG 92 (681)
Q Consensus 22 ~GmRVLIV----DDD~~~r~iL~~~Le~~gy~Vt~as---~a~eALe~L~e~~~~pDLVLlDV~MPd-mDG-~elLe~I~ 92 (681)
..-||++. |.+..=..++..+|+..||+|+... ...+.++.+.+. .+|+|.+...|+. +.. -++++.++
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~--~~~~V~lS~~~~~~~~~~~~~i~~L~ 164 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEH--KADIIGLSGLLVPSLDEMVEVAEEMN 164 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEccchhccHHHHHHHHHHHH
Confidence 34578887 7788888888889999999999765 467777777755 4999999998864 322 34566665
Q ss_pred cc-CCCcEEEEEcCCChHHHHH---HHhcCCcEEEeCCC
Q 005719 93 LE-MDLPVIMLSAYGDTKLVMK---GITHGACDYLLKPV 127 (681)
Q Consensus 93 ~~-~dlPVImLSa~~d~e~v~k---Al~~GA~DYLlKPv 127 (681)
.. .+++|++=.+.-+.+.+.+ +-..||+.|-.-..
T Consensus 165 ~~~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da~ 203 (213)
T cd02069 165 RRGIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDAS 203 (213)
T ss_pred hcCCCCeEEEEChhcCHHHHhhhhccccCCCceEecCHH
Confidence 33 3555554444444444322 23579988865443
No 104
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=86.85 E-value=8.7 Score=38.76 Aligned_cols=99 Identities=15% Similarity=0.088 Sum_probs=66.6
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHhc
Q 005719 23 GMRVLAV----DDDPTCLKVLENFLRACQYEVTVTN---QAVTALKMLRENRNNFDLVISDVHMPDM--DGFKLLEHVGL 93 (681)
Q Consensus 23 GmRVLIV----DDD~~~r~iL~~~Le~~gy~Vt~as---~a~eALe~L~e~~~~pDLVLlDV~MPdm--DG~elLe~I~~ 93 (681)
..|||+. |-+..=...+..+|+..||+|+... ...+.++.+.+. .||+|.+.+.|... .-.++++.++.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~--~~d~v~lS~~~~~~~~~~~~~i~~lr~ 159 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEH--KPDILGLSALMTTTMGGMKEVIEALKE 159 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEeccccccHHHHHHHHHHHHH
Confidence 4588887 7777778889999999999998543 456777777654 49999999977653 23445666654
Q ss_pred cC---CCcEEEEEcCCChHHHHHHHhcCCcEEEeCC
Q 005719 94 EM---DLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126 (681)
Q Consensus 94 ~~---dlPVImLSa~~d~e~v~kAl~~GA~DYLlKP 126 (681)
.. +++|++=...-..+ -+-..||+.|-.-.
T Consensus 160 ~~~~~~~~i~vGG~~~~~~---~~~~~GaD~~~~da 192 (201)
T cd02070 160 AGLRDKVKVMVGGAPVNQE---FADEIGADGYAEDA 192 (201)
T ss_pred CCCCcCCeEEEECCcCCHH---HHHHcCCcEEECCH
Confidence 43 45555443333322 35567998887533
No 105
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=85.43 E-value=14 Score=37.55 Aligned_cols=86 Identities=16% Similarity=0.187 Sum_probs=57.6
Q ss_pred HHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCC-------CCCCCHHHHHHHHhccCCCcEEEEEcCCC
Q 005719 37 KVLENFLRA-CQYEVT-VTNQAVTALKMLRENRNNFDLVISDVH-------MPDMDGFKLLEHVGLEMDLPVIMLSAYGD 107 (681)
Q Consensus 37 ~iL~~~Le~-~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~-------MPdmDG~elLe~I~~~~dlPVImLSa~~d 107 (681)
..+.+.+++ .+..+. .+.+..++..... ..+|+|.+... ......+++++.++...++|||....-.+
T Consensus 108 ~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~---~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t 184 (221)
T PRK01130 108 AELVKRIKEYPGQLLMADCSTLEEGLAAQK---LGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINT 184 (221)
T ss_pred HHHHHHHHhCCCCeEEEeCCCHHHHHHHHH---cCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCC
Confidence 344444555 555554 3456677655443 34888865321 12233478888887666899999888888
Q ss_pred hHHHHHHHhcCCcEEEeC
Q 005719 108 TKLVMKGITHGACDYLLK 125 (681)
Q Consensus 108 ~e~v~kAl~~GA~DYLlK 125 (681)
.+.+.++++.||+.++.-
T Consensus 185 ~~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 185 PEQAKKALELGAHAVVVG 202 (221)
T ss_pred HHHHHHHHHCCCCEEEEc
Confidence 999999999999988665
No 106
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=85.39 E-value=3.9 Score=38.86 Aligned_cols=106 Identities=18% Similarity=0.186 Sum_probs=72.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHH-----HHHHhccC
Q 005719 21 PIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKL-----LEHVGLEM 95 (681)
Q Consensus 21 P~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~el-----Le~I~~~~ 95 (681)
..|-|.+.||.+.........+|...+.+|+.-....+. - ...||++|+.+-.+-..-..+ .+.+. +
T Consensus 9 L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~~l----p--~~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~--m 80 (140)
T COG4999 9 LAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFSAL----P--PAHYDMMLLGVAVTFRENLTMQHERLAKALS--M 80 (140)
T ss_pred hccceeEEecCccHHHHHHHHHHhcCCceEEeccccccc----C--hhhhceeeecccccccCCchHHHHHHHHHHh--h
Confidence 468899999999999999999999989998865543322 1 135999999987765443333 33331 1
Q ss_pred CCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHH
Q 005719 96 DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKN 134 (681)
Q Consensus 96 dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~ 134 (681)
.--||+--.....-.+.+....||.+.|.||++...|.-
T Consensus 81 td~vilalPs~~qv~AeqLkQ~g~~~CllKPls~~rLlp 119 (140)
T COG4999 81 TDFVILALPSHAQVNAEQLKQDGAGACLLKPLSSTRLLP 119 (140)
T ss_pred hcceEEecCcHHHHhHHHHhhcchHhHhhCcchhhhhHH
Confidence 112333333334445677788999999999999877655
No 107
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=84.56 E-value=0.5 Score=53.52 Aligned_cols=57 Identities=25% Similarity=0.380 Sum_probs=31.2
Q ss_pred ccCCCCccccchhhHHHHHHHHHHh---cCCCC------------ChhhHHhhcCCCCCcHHHHHHhhhhhHh
Q 005719 208 TTQKKPRVVWTPELHRKFVGAVNQL---GVDKA------------VPKKILDLMNVEGLTRENVASHLQKFRL 265 (681)
Q Consensus 208 s~~kk~r~~Wt~eLh~~F~~av~~l---G~~ka------------~Pk~il~~m~v~glt~~~v~ShLqkyr~ 265 (681)
+..++.+-||.+++.+-|++|+... |--|- +-..|...-| .--||.+|+||+|.-+.
T Consensus 43 ~~~~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg-~~rt~kqvsshiqvl~~ 114 (431)
T PF01285_consen 43 SLDGDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTG-KTRTRKQVSSHIQVLKR 114 (431)
T ss_dssp ---GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS-----SHHHHHHHHHHTT
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhC-cccchhHHHHHHHHHHH
Confidence 3346778899999999999999987 54330 0011211112 23589999999999833
No 108
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=83.47 E-value=25 Score=34.36 Aligned_cols=113 Identities=16% Similarity=0.055 Sum_probs=73.8
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH----HHHHH
Q 005719 23 GMRVLAV----DDDPTCLKVLENFLRACQYEVTV---TNQAVTALKMLRENRNNFDLVISDVHMPDMDGFK----LLEHV 91 (681)
Q Consensus 23 GmRVLIV----DDD~~~r~iL~~~Le~~gy~Vt~---as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~e----lLe~I 91 (681)
..||||. |.+..-.+.+...|+..||+|.. ..+..|+.+..-++ ..|+|.+...-- ...+ +.+.+
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~--dv~vIgvSsl~g--~h~~l~~~lve~l 87 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEE--DVDVIGVSSLDG--GHLTLVPGLVEAL 87 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhc--CCCEEEEEeccc--hHHHHHHHHHHHH
Confidence 3567665 78888889999999999999985 45778888877543 478887765322 2233 34444
Q ss_pred hccCCCcEE-EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 005719 92 GLEMDLPVI-MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139 (681)
Q Consensus 92 ~~~~dlPVI-mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~V 139 (681)
++.---.|+ ++...-..+...+..++|++.|+.--....+...-+...
T Consensus 88 re~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~ 136 (143)
T COG2185 88 REAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTR 136 (143)
T ss_pred HHhCCcceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHH
Confidence 433222344 444555556666777899999997766666655444443
No 109
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=83.31 E-value=12 Score=37.82 Aligned_cols=94 Identities=13% Similarity=0.202 Sum_probs=65.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 005719 25 RVLAVDDDPTCLKVLENFLRACQ--YEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIML 102 (681)
Q Consensus 25 RVLIVDDD~~~r~iL~~~Le~~g--y~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImL 102 (681)
+++|+.+++..++.++++++.+| |.|..+.+..++++-+......+.|+..+....+ .++-++..-.. .-|++++
T Consensus 33 ~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~--~~~~ir~~~~~-~~p~LIv 109 (176)
T PRK03958 33 KIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD--VEPEIREAHRK-GEPLLIV 109 (176)
T ss_pred eEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc--hHHHHHHhhcc-CCcEEEE
Confidence 78999999999999999999886 7799999999999988743345788888888766 55545432222 5566555
Q ss_pred E-cCCChHHHHHHHhcCCcEEEeCC
Q 005719 103 S-AYGDTKLVMKGITHGACDYLLKP 126 (681)
Q Consensus 103 S-a~~d~e~v~kAl~~GA~DYLlKP 126 (681)
- +..-+..+++ .+||.+-+
T Consensus 110 vGg~gvp~evye-----~aDynlgv 129 (176)
T PRK03958 110 VGAEKVPREVYE-----LADWNVAV 129 (176)
T ss_pred EcCCCCCHHHHh-----hCCEEecc
Confidence 4 4433333332 25776643
No 110
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=78.97 E-value=26 Score=34.86 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=48.2
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEeCCCCCC--------CHHHHHHHHhccCC-CcEEEEEcCCChHHHHHHHhcCCcEEE
Q 005719 53 TNQAVTALKMLRENRNNFDLVISDVHMPDM--------DGFKLLEHVGLEMD-LPVIMLSAYGDTKLVMKGITHGACDYL 123 (681)
Q Consensus 53 as~a~eALe~L~e~~~~pDLVLlDV~MPdm--------DG~elLe~I~~~~d-lPVImLSa~~d~e~v~kAl~~GA~DYL 123 (681)
+.+..++.+... ..+|+|.+..-.|.. .|++.++.+..... +||++..+- +.+.+.+++..||+.+.
T Consensus 111 ~~t~~e~~~a~~---~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv~ 186 (212)
T PRK00043 111 THTLEEAAAALA---AGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGVA 186 (212)
T ss_pred CCCHHHHHHHhH---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEEE
Confidence 445556666554 358999887555532 35788888854444 999888766 57888899999999987
Q ss_pred e
Q 005719 124 L 124 (681)
Q Consensus 124 l 124 (681)
.
T Consensus 187 ~ 187 (212)
T PRK00043 187 V 187 (212)
T ss_pred E
Confidence 5
No 111
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=78.68 E-value=26 Score=35.39 Aligned_cols=97 Identities=14% Similarity=0.094 Sum_probs=62.1
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCCC-CH-HHHHHHHhcc
Q 005719 24 MRVLAV----DDDPTCLKVLENFLRACQYEVTVTN---QAVTALKMLRENRNNFDLVISDVHMPDM-DG-FKLLEHVGLE 94 (681)
Q Consensus 24 mRVLIV----DDD~~~r~iL~~~Le~~gy~Vt~as---~a~eALe~L~e~~~~pDLVLlDV~MPdm-DG-~elLe~I~~~ 94 (681)
-+|++. |.+..-...+..+|+..||+|+... ...+.++.+.+. .||+|.+.+.|... .. .++++.++..
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~--~pd~v~lS~~~~~~~~~~~~~i~~l~~~ 162 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKE--KPLMLTGSALMTTTMYGQKDINDKLKEE 162 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHc--CCCEEEEccccccCHHHHHHHHHHHHHc
Confidence 366665 5666667778888999999999654 456777777754 49999999987652 23 3455666543
Q ss_pred --C-CCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 95 --M-DLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 95 --~-dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
. +++|+ +.+..-.. .-+.+.||+.|-.-
T Consensus 163 ~~~~~v~i~-vGG~~~~~--~~~~~~gad~~~~d 193 (197)
T TIGR02370 163 GYRDSVKFM-VGGAPVTQ--DWADKIGADVYGEN 193 (197)
T ss_pred CCCCCCEEE-EEChhcCH--HHHHHhCCcEEeCC
Confidence 2 34444 44433222 23457799988643
No 112
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=78.64 E-value=36 Score=36.37 Aligned_cols=98 Identities=15% Similarity=0.147 Sum_probs=69.3
Q ss_pred HHHHhCCCeEEEECC--HHHHHHHHHhcCCCceEEEEeCCCCCCCHH-----HHHHHHhccCCCcEEEEEcCCChHHHHH
Q 005719 41 NFLRACQYEVTVTNQ--AVTALKMLRENRNNFDLVISDVHMPDMDGF-----KLLEHVGLEMDLPVIMLSAYGDTKLVMK 113 (681)
Q Consensus 41 ~~Le~~gy~Vt~as~--a~eALe~L~e~~~~pDLVLlDV~MPdmDG~-----elLe~I~~~~dlPVImLSa~~d~e~v~k 113 (681)
+.|-+.||.|..+.+ ..-|.++.+. . =.++|-+--|-.+|. ..++.|....++|||+=..-...+.+.+
T Consensus 131 e~Lv~eGF~VlPY~~~D~v~a~rLed~--G--c~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~ 206 (267)
T CHL00162 131 EFLVKKGFTVLPYINADPMLAKHLEDI--G--CATVMPLGSPIGSGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQ 206 (267)
T ss_pred HHHHHCCCEEeecCCCCHHHHHHHHHc--C--CeEEeeccCcccCCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHH
Confidence 344456999986654 3444443332 1 245555666655543 4577777778899999999999999999
Q ss_pred HHhcCCcEEE-----eCCCChHHHHHHHHHHHHH
Q 005719 114 GITHGACDYL-----LKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 114 Al~~GA~DYL-----lKPvs~eEL~~i~q~Vlrr 142 (681)
+++.||+..+ .|--++.++...+++.+.-
T Consensus 207 AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~A 240 (267)
T CHL00162 207 AMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQA 240 (267)
T ss_pred HHHcCCCEEeecceeecCCCHHHHHHHHHHHHHH
Confidence 9999999974 4667788888888887653
No 113
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=78.17 E-value=6.7 Score=39.96 Aligned_cols=78 Identities=21% Similarity=0.300 Sum_probs=53.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCC--CCCCH--HHHHHHHhccCCCc
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHM--PDMDG--FKLLEHVGLEMDLP 98 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~M--PdmDG--~elLe~I~~~~dlP 98 (681)
+++||+||....+--.|.++|+..|++|+++.+....++.++. ..||.|++.--- |..-| .+++++. ...+|
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~--~~pd~iviSPGPG~P~d~G~~~~~i~~~--~~~~P 76 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEA--LKPDAIVISPGPGTPKDAGISLELIRRF--AGRIP 76 (191)
T ss_pred CceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhh--cCCCEEEEcCCCCChHHcchHHHHHHHh--cCCCC
Confidence 4789999999999999999999999999887765322333332 348999997532 33222 3444443 45689
Q ss_pred EEEEEc
Q 005719 99 VIMLSA 104 (681)
Q Consensus 99 VImLSa 104 (681)
|+-++-
T Consensus 77 iLGVCL 82 (191)
T COG0512 77 ILGVCL 82 (191)
T ss_pred EEEECc
Confidence 987764
No 114
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=77.67 E-value=11 Score=38.53 Aligned_cols=71 Identities=17% Similarity=0.349 Sum_probs=51.9
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcC--CCceEEEEeCCCCCCCHHHHHHHH
Q 005719 19 KFPIGMRVLAVDDDPTCLKVLENFLRACQY--EVT-VTNQAVTALKMLRENR--NNFDLVISDVHMPDMDGFKLLEHV 91 (681)
Q Consensus 19 ~fP~GmRVLIVDDD~~~r~iL~~~Le~~gy--~Vt-~as~a~eALe~L~e~~--~~pDLVLlDV~MPdmDG~elLe~I 91 (681)
..|++-+|.-||-++...+..++++++.|+ .|. ...++.+.+..+.... ..||+|++|.. ..+-.+.++.+
T Consensus 66 ~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~--K~~y~~y~~~~ 141 (205)
T PF01596_consen 66 ALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDAD--KRNYLEYFEKA 141 (205)
T ss_dssp TSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEEST--GGGHHHHHHHH
T ss_pred hhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEccc--ccchhhHHHHH
Confidence 456777999999999999999999999876 455 4577888888775432 36999999984 23344444443
No 115
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=77.56 E-value=37 Score=32.51 Aligned_cols=104 Identities=13% Similarity=0.050 Sum_probs=68.0
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHH-HHHHHHhcc-C-CCcEEEE
Q 005719 30 DDDPTCLKVLENFLRACQYEVTVT---NQAVTALKMLRENRNNFDLVISDVHMPD-MDGF-KLLEHVGLE-M-DLPVIML 102 (681)
Q Consensus 30 DDD~~~r~iL~~~Le~~gy~Vt~a---s~a~eALe~L~e~~~~pDLVLlDV~MPd-mDG~-elLe~I~~~-~-dlPVImL 102 (681)
|-+..-..++..+|+..||+|+-. ....+.++.+.+. .+|+|.+...|.. +..+ ++++.++.. . +++ |++
T Consensus 10 D~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~--~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~-viv 86 (128)
T cd02072 10 DCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIET--DADAILVSSLYGHGEIDCKGLREKCDEAGLKDIL-LYV 86 (128)
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCe-EEE
Confidence 344455667888999999999853 4567777777654 4999999887754 3333 345555432 2 444 444
Q ss_pred EcCC-----C-hHHHHHHHhcCCcEEEeCCCChHHHHHHH
Q 005719 103 SAYG-----D-TKLVMKGITHGACDYLLKPVRIEELKNIW 136 (681)
Q Consensus 103 Sa~~-----d-~e~v~kAl~~GA~DYLlKPvs~eEL~~i~ 136 (681)
...- + .+...+..+.|++..+...-..+++...+
T Consensus 87 GG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l 126 (128)
T cd02072 87 GGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADL 126 (128)
T ss_pred ECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHH
Confidence 4331 1 33456678899999998877777776554
No 116
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=77.33 E-value=33 Score=41.66 Aligned_cols=115 Identities=12% Similarity=0.050 Sum_probs=73.6
Q ss_pred EEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCCC-C-HHHHHHHHhccC
Q 005719 25 RVLAV----DDDPTCLKVLENFLRACQYEVTVT---NQAVTALKMLRENRNNFDLVISDVHMPDM-D-GFKLLEHVGLEM 95 (681)
Q Consensus 25 RVLIV----DDD~~~r~iL~~~Le~~gy~Vt~a---s~a~eALe~L~e~~~~pDLVLlDV~MPdm-D-G~elLe~I~~~~ 95 (681)
||++. |.+..-...+..+|+..||+|..- .+..++.+...+. .+|+|++...+... . .-++++.|+...
T Consensus 584 kV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~--~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G 661 (714)
T PRK09426 584 RILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVEN--DVHVVGVSSLAAGHKTLVPALIEALKKLG 661 (714)
T ss_pred eEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHc--CCCEEEEeccchhhHHHHHHHHHHHHhcC
Confidence 56554 455555667778888889999632 3567777777654 48888887655432 2 234556665432
Q ss_pred CCcE-EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 96 DLPV-IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 96 dlPV-ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
.-.| |++.+.-..+......+.|+++|+..-.+..++...+++.++
T Consensus 662 ~~~v~vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 662 REDIMVVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred CCCcEEEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 1124 445543233444567789999999998888887776666653
No 117
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=77.00 E-value=30 Score=35.20 Aligned_cols=71 Identities=18% Similarity=0.273 Sum_probs=50.4
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCC-------CCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 52 VTNQAVTALKMLRENRNNFDLVISDVH-------MPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 52 ~as~a~eALe~L~e~~~~pDLVLlDV~-------MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
.+.+..++..... ..+|+|.+..+ ......+++++.++...++|||....-.+.+.+.+++..||+.++.
T Consensus 129 ~v~t~~ea~~a~~---~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~v 205 (219)
T cd04729 129 DISTLEEALNAAK---LGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVV 205 (219)
T ss_pred ECCCHHHHHHHHH---cCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 3456677755554 34888765321 1122357888888665689999988888899999999999998876
Q ss_pred C
Q 005719 125 K 125 (681)
Q Consensus 125 K 125 (681)
-
T Consensus 206 G 206 (219)
T cd04729 206 G 206 (219)
T ss_pred c
Confidence 4
No 118
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=76.84 E-value=20 Score=32.15 Aligned_cols=106 Identities=19% Similarity=0.317 Sum_probs=60.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRA-CQYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIM 101 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~-~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVIm 101 (681)
|||.||.--..-+.-+..++.. -+++++ ++....+..+.+.+.. .+. ++.| ++.+-...++-+|+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~-~~~-~~~~-----------~~~ll~~~~~D~V~ 67 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY-GIP-VYTD-----------LEELLADEDVDAVI 67 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT-TSE-EESS-----------HHHHHHHTTESEEE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh-ccc-chhH-----------HHHHHHhhcCCEEE
Confidence 4677777766655556666555 345555 3333333333322221 233 3333 22221112333333
Q ss_pred EE--cCCChHHHHHHHhcCCcEEEeCCC--ChHHHHHHHHHHHHH
Q 005719 102 LS--AYGDTKLVMKGITHGACDYLLKPV--RIEELKNIWQHVIRR 142 (681)
Q Consensus 102 LS--a~~d~e~v~kAl~~GA~DYLlKPv--s~eEL~~i~q~Vlrr 142 (681)
++ .....+.+.++++.|..=|+-||+ +.++++++++.+-+.
T Consensus 68 I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 68 IATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp EESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred EecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 33 334567888999999999999998 788888888776543
No 119
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=75.14 E-value=11 Score=37.85 Aligned_cols=67 Identities=24% Similarity=0.374 Sum_probs=47.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe---EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH---HHHHHHHh
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYE---VTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG---FKLLEHVG 92 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~---Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG---~elLe~I~ 92 (681)
-+|..||-++.....|++-++.++.. .+...+...++..+......||+|++|. |-..+ .++++.|.
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP--PY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP--PYAKGLYYEELLELLA 138 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE----STTSCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC--CcccchHHHHHHHHHH
Confidence 48999999999999999999988743 3456788888877754456799999995 43332 45677664
No 120
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=72.36 E-value=13 Score=41.27 Aligned_cols=53 Identities=26% Similarity=0.466 Sum_probs=34.4
Q ss_pred CCccccchhhHHHHHHHHHHh---cCCCC-------------ChhhHHhhcCCCCCcHHHHHHhhhhhH
Q 005719 212 KPRVVWTPELHRKFVGAVNQL---GVDKA-------------VPKKILDLMNVEGLTRENVASHLQKFR 264 (681)
Q Consensus 212 k~r~~Wt~eLh~~F~~av~~l---G~~ka-------------~Pk~il~~m~v~glt~~~v~ShLqkyr 264 (681)
...=||++++-+.|.+|+... |-.|- +--++.++--=+--||.+|.||.|...
T Consensus 74 daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrtgktRTrKQVSSHIQVla 142 (455)
T KOG3841|consen 74 DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLA 142 (455)
T ss_pred ccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 455689999999999999986 42211 111122221123459999999999764
No 121
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=72.29 E-value=16 Score=39.05 Aligned_cols=114 Identities=16% Similarity=0.227 Sum_probs=68.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH-hccCCCcEEEEEc
Q 005719 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHV-GLEMDLPVIMLSA 104 (681)
Q Consensus 26 VLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I-~~~~dlPVImLSa 104 (681)
|-+.-.++.....+..+|....|.++.+.+..+.++.+..++..+|.+|+...... ..++..+ ....-+|+|++..
T Consensus 3 I~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~~~~~---~~~~~~L~e~g~LLPaVil~~ 79 (283)
T PF07688_consen 3 ICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQSPLL---PPLFNQLYEQGILLPAVILGS 79 (283)
T ss_dssp EEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEETTSTT---HHHHHHHHHCT----EEEES-
T ss_pred EEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEecCCCc---HHHHHHHHHcCccccEEEEec
Confidence 45556677888999999988889999999999999999988889999999875443 4555666 3445689998865
Q ss_pred CCChH--HHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 105 YGDTK--LVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 105 ~~d~e--~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
..... .....+..-..+..++.-..++|-..+.+++.+
T Consensus 80 ~~s~~~~~~~~~~~YH~aEV~L~~~qL~ql~~~ID~AIsr 119 (283)
T PF07688_consen 80 SESASTTSESGTVLYHSAEVHLPIDQLEQLSYNIDQAISR 119 (283)
T ss_dssp --S--TTS--SSGSSBTT-EEE-CCGTTCHHHHHHHHHHH
T ss_pred CcccccCCCCCceeeehHheEccHHHHHHHHHHHHHHHHH
Confidence 32100 001111112223455555567777777777654
No 122
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=70.55 E-value=44 Score=30.78 Aligned_cols=105 Identities=11% Similarity=0.094 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCC-CHHHHHHHHhc-cCCCcEEEEEcCCChHH
Q 005719 35 CLKVLENFLRACQYEVTVTN--QAVTALKMLRENRNNFDLVISDVHMPDM-DGFKLLEHVGL-EMDLPVIMLSAYGDTKL 110 (681)
Q Consensus 35 ~r~iL~~~Le~~gy~Vt~as--~a~eALe~L~e~~~~pDLVLlDV~MPdm-DG~elLe~I~~-~~dlPVImLSa~~d~e~ 110 (681)
-+..+..+|++.|+.|.... ...+.++.+... ..||+|.+.+.-... ...++++.++. .++++||+-..... ..
T Consensus 4 gl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~-~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t-~~ 81 (127)
T cd02068 4 GLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKEL-LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHAT-FF 81 (127)
T ss_pred hHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHh-cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchh-hC
Confidence 45667888888888776544 345556666542 459999999855543 34566777754 45566665443322 11
Q ss_pred HHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 111 VMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 111 v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
....+..-..||+.+---...+.++++++.+
T Consensus 82 p~~~~~~~~~D~vv~GEgE~~~~~l~~~l~~ 112 (127)
T cd02068 82 PEEILEEPGVDFVVIGEGEETFLKLLEELEE 112 (127)
T ss_pred HHHHhcCCCCCEEEECCcHHHHHHHHHHHHc
Confidence 1222344455787776555667777776543
No 123
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=69.35 E-value=62 Score=32.82 Aligned_cols=82 Identities=21% Similarity=0.235 Sum_probs=52.8
Q ss_pred HHHHhCCCeEEEE-CCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCcEEEEEcCCChHHHH
Q 005719 41 NFLRACQYEVTVT-NQAVTALKMLRENRNNFDLVISDVHMPD-------MDGFKLLEHVGLEMDLPVIMLSAYGDTKLVM 112 (681)
Q Consensus 41 ~~Le~~gy~Vt~a-s~a~eALe~L~e~~~~pDLVLlDV~MPd-------mDG~elLe~I~~~~dlPVImLSa~~d~e~v~ 112 (681)
+.+++.+..+... .+..++.++. + ...|.|+++-.-.+ ...+++++.++...++||++.-.-...+.+.
T Consensus 96 ~~~~~~~i~~i~~v~~~~~~~~~~-~--~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~ 172 (236)
T cd04730 96 ERLKAAGIKVIPTVTSVEEARKAE-A--AGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIA 172 (236)
T ss_pred HHHHHcCCEEEEeCCCHHHHHHHH-H--cCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHH
Confidence 3344445444433 3444444433 3 24788887643211 1456788888766689999988877778899
Q ss_pred HHHhcCCcEEEeC
Q 005719 113 KGITHGACDYLLK 125 (681)
Q Consensus 113 kAl~~GA~DYLlK 125 (681)
+++..||+...+-
T Consensus 173 ~~l~~GadgV~vg 185 (236)
T cd04730 173 AALALGADGVQMG 185 (236)
T ss_pred HHHHcCCcEEEEc
Confidence 9999999987664
No 124
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=69.34 E-value=54 Score=33.37 Aligned_cols=66 Identities=17% Similarity=0.276 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCCce-EEEEeCCCCCC-CH--HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 57 VTALKMLRENRNNFD-LVISDVHMPDM-DG--FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 57 ~eALe~L~e~~~~pD-LVLlDV~MPdm-DG--~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
.+..+.+.+. .++ +++.|+.--++ .| +++++.+....++|||+-..-.+.+.+.++++.||+.+++
T Consensus 148 ~~~~~~~~~~--g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 148 EELAKRLEEL--GLEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred HHHHHHHHhC--CCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 4444445432 366 77788865432 22 6778888666789999988889999999999999999876
No 125
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=67.56 E-value=43 Score=36.28 Aligned_cols=85 Identities=19% Similarity=0.190 Sum_probs=59.7
Q ss_pred HHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCC-----CCCCHHHHHHHHhccCCCcEEEEEcCCChHHHH
Q 005719 39 LENFLRACQYEVT-VTNQAVTALKMLRENRNNFDLVISDVHM-----PDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVM 112 (681)
Q Consensus 39 L~~~Le~~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~M-----PdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~ 112 (681)
+.+.++..|..|. .+.+..+|..+.+ ..+|.|++.-.- ....-+.+++.+....++|||+-..-.+.+.+.
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~---~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~ 177 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEK---AGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMA 177 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHH---cCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHH
Confidence 4455555565554 4566777766554 248988874432 122357888888766689999998888999999
Q ss_pred HHHhcCCcEEEeCC
Q 005719 113 KGITHGACDYLLKP 126 (681)
Q Consensus 113 kAl~~GA~DYLlKP 126 (681)
+++..||+...+--
T Consensus 178 ~al~~GA~gV~iGt 191 (307)
T TIGR03151 178 AAFALGAEAVQMGT 191 (307)
T ss_pred HHHHcCCCEeecch
Confidence 99999999887653
No 126
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=67.03 E-value=22 Score=37.06 Aligned_cols=57 Identities=11% Similarity=0.291 Sum_probs=42.2
Q ss_pred HHHHHHHHhccCCCcEEEEEcCCC------hHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 005719 84 GFKLLEHVGLEMDLPVIMLSAYGD------TKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140 (681)
Q Consensus 84 G~elLe~I~~~~dlPVImLSa~~d------~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vl 140 (681)
++++++.++...++|+++|+-... ...+.++.++||+..+.-.+..+++...++.+.
T Consensus 64 ~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~ 126 (242)
T cd04724 64 VLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAK 126 (242)
T ss_pred HHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH
Confidence 455666666555789998887553 667888999999999997777787776666653
No 127
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.13 E-value=32 Score=37.17 Aligned_cols=101 Identities=21% Similarity=0.275 Sum_probs=59.9
Q ss_pred cEEEEEe--CCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHH-------------HHhcCCCceEEEEeCCCCCCCHH
Q 005719 24 MRVLAVD--DDPTC---LKVLENFLRACQYEVTVTNQAVTALKM-------------LRENRNNFDLVISDVHMPDMDGF 85 (681)
Q Consensus 24 mRVLIVD--DD~~~---r~iL~~~Le~~gy~Vt~as~a~eALe~-------------L~e~~~~pDLVLlDV~MPdmDG~ 85 (681)
|+|.||- +.+.. ...+.++|++.|++|.+.....+.+.. .......+|+||+ -+.||-
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDGT 76 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVIS----IGGDGT 76 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEE----ECCcHH
Confidence 5777772 33333 345556676778888875543322210 0111124688877 478884
Q ss_pred --HHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 86 --KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 86 --elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
.+++.+ ...++||+-+- .|-..||. .++.+++...+.++++..
T Consensus 77 ~L~aa~~~-~~~~~PilGIN-------------~G~lGFLt-~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 77 FLRTATYV-GNSNIPILGIN-------------TGRLGFLA-TVSKEEIEETIDELLNGD 121 (292)
T ss_pred HHHHHHHh-cCCCCCEEEEe-------------cCCCCccc-ccCHHHHHHHHHHHHcCC
Confidence 233333 23578988664 35566775 688899999999987643
No 128
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=65.10 E-value=67 Score=37.04 Aligned_cols=107 Identities=13% Similarity=0.116 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHHhCC-CeEEEECC------HHHHHHHHHhcCCCceEEEEeCCCCCCC-HHHHHHHHh-ccCCCcEEEE
Q 005719 32 DPTCLKVLENFLRACQ-YEVTVTNQ------AVTALKMLRENRNNFDLVISDVHMPDMD-GFKLLEHVG-LEMDLPVIML 102 (681)
Q Consensus 32 D~~~r~iL~~~Le~~g-y~Vt~as~------a~eALe~L~e~~~~pDLVLlDV~MPdmD-G~elLe~I~-~~~dlPVImL 102 (681)
.|.-+..|...|+..| ++|..+.. ..+..+.+++. .||+|.+...-+... ..++++.++ ..++++||+=
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~--~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~G 98 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAH--CPDLVLITAITPAIYIACETLKFARERLPNAIIVLG 98 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhc--CcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEc
Confidence 4666778888998889 68887652 22334445543 599999987655432 345666665 3466666654
Q ss_pred EcCCChHHHHHHHh-cCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 103 SAYGDTKLVMKGIT-HGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 103 Sa~~d~e~v~kAl~-~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
..+.. ....+++. ....||++.--..+.+.++++++..
T Consensus 99 G~h~t-~~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~~ 137 (497)
T TIGR02026 99 GIHPT-FMFHQVLTEAPWIDFIVRGEGEETVVKLIAALEN 137 (497)
T ss_pred CCCcC-cCHHHHHhcCCCccEEEeCCcHHHHHHHHHHHHc
Confidence 33322 22233443 4567888887777888888877643
No 129
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=64.59 E-value=54 Score=33.41 Aligned_cols=101 Identities=26% Similarity=0.354 Sum_probs=56.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHh--CCC-------------eEEEECCHHHHHHHHHh-cCCCceEEEEeCC-CCCCCHHHH
Q 005719 25 RVLAVDDDPTCLKVLENFLRA--CQY-------------EVTVTNQAVTALKMLRE-NRNNFDLVISDVH-MPDMDGFKL 87 (681)
Q Consensus 25 RVLIVDDD~~~r~iL~~~Le~--~gy-------------~Vt~as~a~eALe~L~e-~~~~pDLVLlDV~-MPdmDG~el 87 (681)
+..||..-+..++.+++++.- .|+ .|.++.+..+|++.+.+ ....|-+|..|.. -|..-.++-
T Consensus 44 ~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~~ 123 (185)
T PF09936_consen 44 GYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYAE 123 (185)
T ss_dssp EEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HHH
T ss_pred CEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHHH
Confidence 578888888888888888752 222 38899999999998865 3346899999998 455556766
Q ss_pred HHHHhccCCCcEEEE--EcCCChHHHHHHHhcCCcEEEeCCCChH
Q 005719 88 LEHVGLEMDLPVIML--SAYGDTKLVMKGITHGACDYLLKPVRIE 130 (681)
Q Consensus 88 Le~I~~~~dlPVImL--Sa~~d~e~v~kAl~~GA~DYLlKPvs~e 130 (681)
+++.-...+-|++++ |+..-.+.++ ..+||++.|+...
T Consensus 124 lr~~l~~~~~P~LllFGTGwGL~~ev~-----~~~D~iLePI~g~ 163 (185)
T PF09936_consen 124 LRRMLEEEDRPVLLLFGTGWGLAPEVM-----EQCDYILEPIRGA 163 (185)
T ss_dssp HHHHHHH--S-EEEEE--TT---HHHH-----TT-SEEB--TTTT
T ss_pred HHHHHhccCCeEEEEecCCCCCCHHHH-----HhcCeeEcccccC
Confidence 665534456777666 4544444443 2479999998753
No 130
>PLN02591 tryptophan synthase
Probab=64.28 E-value=22 Score=37.63 Aligned_cols=58 Identities=14% Similarity=0.299 Sum_probs=45.9
Q ss_pred CHHHHHHHHhccCCCcEEEEEcCC------ChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 005719 83 DGFKLLEHVGLEMDLPVIMLSAYG------DTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140 (681)
Q Consensus 83 DG~elLe~I~~~~dlPVImLSa~~------d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vl 140 (681)
+.|++++.++...++|+|+|+-.. -.....++.+.|++..|+-.+..+|.......+.
T Consensus 65 ~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~ 128 (250)
T PLN02591 65 SVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAA 128 (250)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 357777888766789999998653 3456788899999999999999998887777663
No 131
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=64.09 E-value=52 Score=38.15 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=27.8
Q ss_pred ccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCC
Q 005719 93 LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126 (681)
Q Consensus 93 ~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKP 126 (681)
...++|||.-..-.....+.+|+.+||+..+.--
T Consensus 341 ~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~ 374 (495)
T PTZ00314 341 RERGVPCIADGGIKNSGDICKALALGADCVMLGS 374 (495)
T ss_pred hhcCCeEEecCCCCCHHHHHHHHHcCCCEEEECc
Confidence 3456898887777888999999999999887654
No 132
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=63.54 E-value=44 Score=35.34 Aligned_cols=98 Identities=19% Similarity=0.165 Sum_probs=64.9
Q ss_pred HHHHHhCCCeEEEECCHHHHHH-HHHhcCCCceEEEEeCCCCCCCHH-----HHHHHHhccCCCcEEEEEcCCChHHHHH
Q 005719 40 ENFLRACQYEVTVTNQAVTALK-MLRENRNNFDLVISDVHMPDMDGF-----KLLEHVGLEMDLPVIMLSAYGDTKLVMK 113 (681)
Q Consensus 40 ~~~Le~~gy~Vt~as~a~eALe-~L~e~~~~pDLVLlDV~MPdmDG~-----elLe~I~~~~dlPVImLSa~~d~e~v~k 113 (681)
.+.|-+.||.|..+.+.+-.+. .|++- . =.++|-+--|-.+|. ..|+.|..+.++|||+=..-.....+..
T Consensus 123 ae~Lv~eGF~VlPY~~dD~v~arrLee~-G--caavMPl~aPIGSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~ 199 (262)
T COG2022 123 AEQLVKEGFVVLPYTTDDPVLARRLEEA-G--CAAVMPLGAPIGSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQ 199 (262)
T ss_pred HHHHHhCCCEEeeccCCCHHHHHHHHhc-C--ceEeccccccccCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHH
Confidence 3445566999987654433222 23322 1 245666666766654 4566666667999999999999999999
Q ss_pred HHhcCCcEEEeCC-----CChHHHHHHHHHHH
Q 005719 114 GITHGACDYLLKP-----VRIEELKNIWQHVI 140 (681)
Q Consensus 114 Al~~GA~DYLlKP-----vs~eEL~~i~q~Vl 140 (681)
+++.|++..|+-- -++-.+.+.+.+.+
T Consensus 200 aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av 231 (262)
T COG2022 200 AMELGADAVLLNTAIARAKDPVAMARAFALAV 231 (262)
T ss_pred HHhcccceeehhhHhhccCChHHHHHHHHHHH
Confidence 9999999998652 34445555555554
No 133
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=63.08 E-value=38 Score=35.88 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=60.9
Q ss_pred HHHHhCCCeEEEECC--HHHHHHHHHhcCCCceEEEEeCCCCCCCHH-----HHHHHHhccCCCcEEEEEcCCChHHHHH
Q 005719 41 NFLRACQYEVTVTNQ--AVTALKMLRENRNNFDLVISDVHMPDMDGF-----KLLEHVGLEMDLPVIMLSAYGDTKLVMK 113 (681)
Q Consensus 41 ~~Le~~gy~Vt~as~--a~eALe~L~e~~~~pDLVLlDV~MPdmDG~-----elLe~I~~~~dlPVImLSa~~d~e~v~k 113 (681)
+.|-+.||.|..+.+ ..-|.++.... . -++|-+--|-.+|. ..++.|....++|||+=.+-..+..+..
T Consensus 117 e~Lv~eGF~VlPY~~~D~v~akrL~d~G---c-aavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~ 192 (247)
T PF05690_consen 117 EILVKEGFVVLPYCTDDPVLAKRLEDAG---C-AAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQ 192 (247)
T ss_dssp HHHHHTT-EEEEEE-S-HHHHHHHHHTT-----SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES---SHHHHHH
T ss_pred HHHHHCCCEEeecCCCCHHHHHHHHHCC---C-CEEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHH
Confidence 345566999986543 44444443321 1 34555666766653 4567776666999999999999999999
Q ss_pred HHhcCCcEEEeC-----CCChHHHHHHHHHHHH
Q 005719 114 GITHGACDYLLK-----PVRIEELKNIWQHVIR 141 (681)
Q Consensus 114 Al~~GA~DYLlK-----Pvs~eEL~~i~q~Vlr 141 (681)
+++.|++..|+- --++-.+...+++.+.
T Consensus 193 AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~ 225 (247)
T PF05690_consen 193 AMELGADAVLVNTAIAKAKDPVAMARAFKLAVE 225 (247)
T ss_dssp HHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHcCCceeehhhHHhccCCHHHHHHHHHHHHH
Confidence 999999999874 4566677777776654
No 134
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=62.82 E-value=58 Score=37.92 Aligned_cols=95 Identities=17% Similarity=0.100 Sum_probs=44.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhc-------------------CCCceEEEEeCCCCCCCHH
Q 005719 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLREN-------------------RNNFDLVISDVHMPDMDGF 85 (681)
Q Consensus 25 RVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~-------------------~~~pDLVLlDV~MPdmDG~ 85 (681)
+|+|+.-.+.-+. +.+.|++.|++|+..+.-.+..+.+++. -++.|.|++-+.-.+.+ .
T Consensus 419 hiiI~G~G~~G~~-la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~-~ 496 (558)
T PRK10669 419 HALLVGYGRVGSL-LGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEA-G 496 (558)
T ss_pred CEEEECCChHHHH-HHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHH-H
Confidence 4666665555443 3334444456665555444444444321 12345454433211111 1
Q ss_pred HHHHHH-hccCCCcEEEEEcCCChHHHHHHHhcCCcEEE
Q 005719 86 KLLEHV-GLEMDLPVIMLSAYGDTKLVMKGITHGACDYL 123 (681)
Q Consensus 86 elLe~I-~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYL 123 (681)
.++..+ ...++.+||+.+.+ .+......+.||+..+
T Consensus 497 ~iv~~~~~~~~~~~iiar~~~--~~~~~~l~~~Gad~vv 533 (558)
T PRK10669 497 EIVASAREKRPDIEIIARAHY--DDEVAYITERGANQVV 533 (558)
T ss_pred HHHHHHHHHCCCCeEEEEECC--HHHHHHHHHcCCCEEE
Confidence 222333 23466777776543 3444555678886554
No 135
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=62.37 E-value=1.3e+02 Score=30.72 Aligned_cols=66 Identities=20% Similarity=0.303 Sum_probs=45.4
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 70 FDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 70 pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
.|++++--...+.-|..+++.+. ..+|||+. ... ...+.+..|..+++.++-+.++|.+.+..++.
T Consensus 263 ad~~i~ps~~~e~~~~~~~Ea~a--~G~Pvi~~-~~~---~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 263 IDVLVVPSIWPENFPLVIREALA--AGVPVIAS-DIG---GMAELVRDGVNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred CCEEEEcCcccCCCChHHHHHHH--CCCCEEEC-CCC---CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 46766543323445667777764 45888853 222 23445677888999999999999999988875
No 136
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=62.36 E-value=90 Score=36.39 Aligned_cols=101 Identities=14% Similarity=0.263 Sum_probs=64.8
Q ss_pred CCcEEEEEeCCH----HHHHHHHHHHHh-C-CCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCC--------------C
Q 005719 22 IGMRVLAVDDDP----TCLKVLENFLRA-C-QYEVTV--TNQAVTALKMLRENRNNFDLVISDVH--------------M 79 (681)
Q Consensus 22 ~GmRVLIVDDD~----~~r~iL~~~Le~-~-gy~Vt~--as~a~eALe~L~e~~~~pDLVLlDV~--------------M 79 (681)
.|.-|++||--. ...+.+ +.+++ + +-.|.. +.+..+|..++. ..+|.|.+-++ .
T Consensus 259 ag~d~i~iD~~~g~~~~~~~~i-~~ik~~~p~~~vi~g~v~t~e~a~~a~~---aGaD~i~vg~g~G~~~~t~~~~~~g~ 334 (505)
T PLN02274 259 AGVDVVVLDSSQGDSIYQLEMI-KYIKKTYPELDVIGGNVVTMYQAQNLIQ---AGVDGLRVGMGSGSICTTQEVCAVGR 334 (505)
T ss_pred cCCCEEEEeCCCCCcHHHHHHH-HHHHHhCCCCcEEEecCCCHHHHHHHHH---cCcCEEEECCCCCccccCccccccCC
Confidence 366778887432 111223 33333 3 234432 567777877775 34888876431 1
Q ss_pred CCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCC
Q 005719 80 PDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126 (681)
Q Consensus 80 PdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKP 126 (681)
|....+..+..+....++|||+-..-.....+.+|+..||+.++.--
T Consensus 335 ~~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~vGs 381 (505)
T PLN02274 335 GQATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVMMGS 381 (505)
T ss_pred CcccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEch
Confidence 23334555666655567999999999999999999999999887653
No 137
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=62.35 E-value=70 Score=35.31 Aligned_cols=111 Identities=14% Similarity=0.169 Sum_probs=57.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCe---------------EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHH
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYE---------------VTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKL 87 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~---------------Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~el 87 (681)
.++++||-+.+.....+++++++.|.. |..+....+..+.+. ..|++++--...+.-|..+
T Consensus 262 ~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~----~aDi~~v~~S~~e~~g~~~ 337 (425)
T PRK05749 262 NLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYA----IADIAFVGGSLVKRGGHNP 337 (425)
T ss_pred CcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHH----hCCEEEECCCcCCCCCCCH
Confidence 356666666665445566666655542 222222223333332 2477655322212224445
Q ss_pred HHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 88 LEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 88 Le~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
+|.. ...+|||+--...+...+.+.+.. .+++..|-+.++|...+..++.
T Consensus 338 lEAm--a~G~PVI~g~~~~~~~e~~~~~~~--~g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 338 LEPA--AFGVPVISGPHTFNFKEIFERLLQ--AGAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHH--HhCCCEEECCCccCHHHHHHHHHH--CCCeEEECCHHHHHHHHHHHhc
Confidence 5544 256898863322334444333321 2456668889999999988764
No 138
>PRK15320 transcriptional activator SprB; Provisional
Probab=62.20 E-value=80 Score=32.88 Aligned_cols=105 Identities=16% Similarity=0.052 Sum_probs=65.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 005719 25 RVLAVDDDPTCLKVLENFLRAC--QYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIML 102 (681)
Q Consensus 25 RVLIVDDD~~~r~iL~~~Le~~--gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImL 102 (681)
.|+|-.+.=...-.+..++++. +..|.+|......|..++. .||.+++=.--|...-+-+-.....-++-||+++
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~~---~p~a~lil~l~p~eh~~lf~~l~~~l~~~~v~vv 79 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSD---MPDAGLILALNPHEHVYLFHALLTRLQNRKVLVV 79 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHhh---CCCceEEEeeCchhHHHHHHHHHHHcCCCceEEE
Confidence 4677777777777788888764 5677788888888887764 3666555444454433332222234567899998
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHH
Q 005719 103 SAYGDTKLVMKGITHGACDYLLKPVRIEELKNIW 136 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~ 136 (681)
+..--..+..-..-.|..+|++| +||..++
T Consensus 80 ~d~l~~~dr~vl~~~g~~~~~l~----~el~~~~ 109 (251)
T PRK15320 80 ADRLYYIDRCVLQYFGVMDYVLK----DELSCAI 109 (251)
T ss_pred ecceeehhhhhhhhhcchhHHHH----HHHHHHh
Confidence 87644333333345688888766 3554444
No 139
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=62.06 E-value=1e+02 Score=34.10 Aligned_cols=92 Identities=9% Similarity=0.100 Sum_probs=61.4
Q ss_pred CCCeE-EEEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCC-----HHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcC
Q 005719 46 CQYEV-TVTN-QAVTALKMLRENRNNFDLVISDVHMPDMD-----GFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHG 118 (681)
Q Consensus 46 ~gy~V-t~as-~a~eALe~L~e~~~~pDLVLlDV~MPdmD-----G~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~G 118 (681)
.|+.| .+|. +...|-++..- .+ +.++-+--|-.. --+.++.+....++|||+=.+-...+.+.+|++.|
T Consensus 196 ~Gf~v~~yc~~d~~~a~~l~~~---g~-~avmPl~~pIGsg~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~AmelG 271 (326)
T PRK11840 196 EGFQVMVYCSDDPIAAKRLEDA---GA-VAVMPLGAPIGSGLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMELG 271 (326)
T ss_pred CCCEEEEEeCCCHHHHHHHHhc---CC-EEEeeccccccCCCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHcC
Confidence 39988 4444 45555544432 23 444432222222 23566666556789999989999999999999999
Q ss_pred CcEEEe-----CCCChHHHHHHHHHHHH
Q 005719 119 ACDYLL-----KPVRIEELKNIWQHVIR 141 (681)
Q Consensus 119 A~DYLl-----KPvs~eEL~~i~q~Vlr 141 (681)
|+..|. |--++-.+.+.+++.+.
T Consensus 272 adgVL~nSaIa~a~dPv~Ma~A~~~av~ 299 (326)
T PRK11840 272 CDGVLMNTAIAEAKNPVLMARAMKLAVE 299 (326)
T ss_pred CCEEEEcceeccCCCHHHHHHHHHHHHH
Confidence 999854 55667777777777764
No 140
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=62.03 E-value=1.4e+02 Score=30.09 Aligned_cols=78 Identities=14% Similarity=0.026 Sum_probs=51.5
Q ss_pred HhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCC--CCCCHHHHHHHHhcc--CCCcEEEEEcCCChHHHHHHHhcC
Q 005719 44 RACQYEVT-VTNQAVTALKMLRENRNNFDLVISDVHM--PDMDGFKLLEHVGLE--MDLPVIMLSAYGDTKLVMKGITHG 118 (681)
Q Consensus 44 e~~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~M--PdmDG~elLe~I~~~--~dlPVImLSa~~d~e~v~kAl~~G 118 (681)
...|..+. .+.+..++.+..+. .+|.|.+--.- ....++++++.+... .++|||....-...+.+.+++..|
T Consensus 118 ~~~g~~~~v~v~~~~e~~~~~~~---g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~G 194 (217)
T cd00331 118 RELGMEVLVEVHDEEELERALAL---GAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAG 194 (217)
T ss_pred HHcCCeEEEEECCHHHHHHHHHc---CCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcC
Confidence 44576653 35566666555542 37777654110 012235777777544 468999999999999999999999
Q ss_pred CcEEEe
Q 005719 119 ACDYLL 124 (681)
Q Consensus 119 A~DYLl 124 (681)
|+.+++
T Consensus 195 a~gviv 200 (217)
T cd00331 195 ADAVLI 200 (217)
T ss_pred CCEEEE
Confidence 999865
No 141
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=61.55 E-value=32 Score=35.75 Aligned_cols=68 Identities=12% Similarity=0.171 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCC-CH--HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 57 VTALKMLRENRNNFDLVISDVHMPDM-DG--FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 57 ~eALe~L~e~~~~pDLVLlDV~MPdm-DG--~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
.+.++.+.+. .--.+|++|+..-++ .| +++++.+....++|||+-..-.+.+.+.++++.|++..++-
T Consensus 151 ~~~~~~~~~~-g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG 221 (234)
T PRK13587 151 FSFVRQLSDI-PLGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAIIG 221 (234)
T ss_pred HHHHHHHHHc-CCCEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEh
Confidence 3444444332 223799999987653 34 67788886667899999988899999999999999998763
No 142
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=61.44 E-value=1.7e+02 Score=32.09 Aligned_cols=108 Identities=13% Similarity=0.186 Sum_probs=62.4
Q ss_pred cEEEEEeCCH--------HHHHHHHHHHHhCCCeEEEECC--HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 005719 24 MRVLAVDDDP--------TCLKVLENFLRACQYEVTVTNQ--AVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL 93 (681)
Q Consensus 24 mRVLIVDDD~--------~~r~iL~~~Le~~gy~Vt~as~--a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~ 93 (681)
++++||.+.+ ...+.++++....+-.|..... ..+..+.+. ..|++++--...+.-|..+++.+.
T Consensus 225 ~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~----~aDv~v~pS~~~E~f~~~~lEAma- 299 (380)
T PRK15484 225 LKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYP----LADLVVVPSQVEEAFCMVAVEAMA- 299 (380)
T ss_pred eEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHH----hCCEEEeCCCCccccccHHHHHHH-
Confidence 5666665422 2333444444444545554443 334444443 257877643333444556666653
Q ss_pred cCCCcEEEEEcCCChHHHHHHHhcCCcEE-EeCCCChHHHHHHHHHHHH
Q 005719 94 EMDLPVIMLSAYGDTKLVMKGITHGACDY-LLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 94 ~~dlPVImLSa~~d~e~v~kAl~~GA~DY-LlKPvs~eEL~~i~q~Vlr 141 (681)
..+|||.... .. ..+.+..|.++| +..|.+.++|.+.+..++.
T Consensus 300 -~G~PVI~s~~-gg---~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 300 -AGKPVLASTK-GG---ITEFVLEGITGYHLAEPMTSDSIISDINRTLA 343 (380)
T ss_pred -cCCCEEEeCC-CC---cHhhcccCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 4689886433 22 233466788888 5678999999999988874
No 143
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=61.10 E-value=51 Score=35.71 Aligned_cols=59 Identities=12% Similarity=0.091 Sum_probs=42.8
Q ss_pred CHHHHHHHHhccCCCcEE--EEEcCCChHHHHHHHhcCCcEEEeC-----CCChHHHHHHHHHHHH
Q 005719 83 DGFKLLEHVGLEMDLPVI--MLSAYGDTKLVMKGITHGACDYLLK-----PVRIEELKNIWQHVIR 141 (681)
Q Consensus 83 DG~elLe~I~~~~dlPVI--mLSa~~d~e~v~kAl~~GA~DYLlK-----Pvs~eEL~~i~q~Vlr 141 (681)
.++++++.+.....+||| ....-..++.+.++++.||+.+++- .-++.+....+...+.
T Consensus 181 ~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~ 246 (283)
T cd04727 181 APYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVT 246 (283)
T ss_pred CCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence 478889888766679997 6666678999999999999998654 3345555555544443
No 144
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=60.80 E-value=47 Score=37.00 Aligned_cols=71 Identities=17% Similarity=0.220 Sum_probs=47.7
Q ss_pred ceEEEEeCCCCCCCHHH-HHHHHhccCCCcEEEEEc-CCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 70 FDLVISDVHMPDMDGFK-LLEHVGLEMDLPVIMLSA-YGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 70 pDLVLlDV~MPdmDG~e-lLe~I~~~~dlPVImLSa-~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
.+.+|++..-+..-=+| ++..+. .....||.... ..+...+...++.|+++.+++|-+..+++.+...+-+
T Consensus 97 ~~~~iv~~~Dw~iIPlEnliA~~~-~~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~~~~ 169 (354)
T PF01959_consen 97 ADYVIVEFRDWTIIPLENLIAALQ-GSSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEIKALVALLKE 169 (354)
T ss_pred CCeEEEEcCCCcEecHHHHHHHhc-CCCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhh
Confidence 57777776555433333 233332 23445554443 3566677889999999999999999999988876643
No 145
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=60.67 E-value=1.3e+02 Score=28.10 Aligned_cols=109 Identities=21% Similarity=0.292 Sum_probs=68.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHH--HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQY--EVTVTNQAV--TALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLP 98 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy--~Vt~as~a~--eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlP 98 (681)
.++++|+.+... ...+....+..+. .+....... +..++++. .|++++=... +.-|..+++.+. ..+|
T Consensus 47 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~----~di~v~~s~~-e~~~~~~~Ea~~--~g~p 118 (172)
T PF00534_consen 47 NYKLVIVGDGEY-KKELKNLIEKLNLKENIIFLGYVPDDELDELYKS----SDIFVSPSRN-EGFGLSLLEAMA--CGCP 118 (172)
T ss_dssp TEEEEEESHCCH-HHHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH----TSEEEE-BSS-BSS-HHHHHHHH--TT-E
T ss_pred CeEEEEEccccc-cccccccccccccccccccccccccccccccccc----ceeccccccc-cccccccccccc--cccc
Confidence 467777773332 2335555555443 465555443 55555553 5777775544 556677777764 4577
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
||+ +. .....+.+..+..+|+..+.+.++|...+..++...
T Consensus 119 vI~-~~---~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 119 VIA-SD---IGGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp EEE-ES---STHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred eee-cc---ccCCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 774 33 234456678888999999999999999999988654
No 146
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=60.63 E-value=1.3e+02 Score=33.16 Aligned_cols=98 Identities=10% Similarity=0.105 Sum_probs=61.7
Q ss_pred EEEEEeC----CHHHHHHHHHHHHhCC-CeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCC-----------CCC--H
Q 005719 25 RVLAVDD----DPTCLKVLENFLRACQ-YEVTV--TNQAVTALKMLRENRNNFDLVISDVHMP-----------DMD--G 84 (681)
Q Consensus 25 RVLIVDD----D~~~r~iL~~~Le~~g-y~Vt~--as~a~eALe~L~e~~~~pDLVLlDV~MP-----------dmD--G 84 (681)
.+++||- .....+.++++=+.+. ..|.. +.+..+|..++. ..+|+|.+-..=- ... +
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~---aGad~i~vg~~~G~~~~t~~~~g~~~~~w~ 189 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELEN---AGADATKVGIGPGKVCITKIKTGFGTGGWQ 189 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHH---cCcCEEEECCCCCcccccccccCCCCCccH
Confidence 6777852 2233333333333332 23333 567778877765 3478876442111 112 4
Q ss_pred HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 85 ~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
+..++.+.....+|||.-..-.....+.+|+..||+.+..-
T Consensus 190 l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 190 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 55577775555799999999999999999999999988765
No 147
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=60.36 E-value=79 Score=35.83 Aligned_cols=107 Identities=15% Similarity=0.254 Sum_probs=64.2
Q ss_pred CcEEEEEeC---CHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 005719 23 GMRVLAVDD---DPTCLKVLENFLRACQY--EVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDL 97 (681)
Q Consensus 23 GmRVLIVDD---D~~~r~iL~~~Le~~gy--~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dl 97 (681)
.++++|+.+ ++...+.+++++++.+. .|.... ..+..+.+. ..|++++--. .+.-++.+++.+. ..+
T Consensus 324 ~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~----~aDv~vlpS~-~Eg~p~~vlEAma--~G~ 395 (475)
T cd03813 324 DAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLP----KLDVLVLTSI-SEGQPLVILEAMA--AGI 395 (475)
T ss_pred CeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHH----hCCEEEeCch-hhcCChHHHHHHH--cCC
Confidence 356666643 34555566666655543 344443 223333332 2577776432 3445667777763 468
Q ss_pred cEEEEEcCCChHHHHHHHhc------CCcEEEeCCCChHHHHHHHHHHHH
Q 005719 98 PVIMLSAYGDTKLVMKGITH------GACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 98 PVImLSa~~d~e~v~kAl~~------GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
|||. |.... ..+.+.. |.++++..|-+.++|.+.+..++.
T Consensus 396 PVVa-td~g~---~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~ 441 (475)
T cd03813 396 PVVA-TDVGS---CRELIEGADDEALGPAGEVVPPADPEALARAILRLLK 441 (475)
T ss_pred CEEE-CCCCC---hHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhc
Confidence 8876 43333 2333444 778999999999999999988864
No 148
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=60.18 E-value=75 Score=33.94 Aligned_cols=107 Identities=22% Similarity=0.310 Sum_probs=61.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQY--EVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVI 100 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy--~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVI 100 (681)
+++++++.+.+. ...+++.++..+. .|.......+..+.+. ..|++++-- ..+.-|..+++.+. ..+|||
T Consensus 229 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~----~adi~v~pS-~~Eg~~~~~lEAma--~G~Pvv 300 (374)
T TIGR03088 229 RLRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQ----ALDLFVLPS-LAEGISNTILEAMA--SGLPVI 300 (374)
T ss_pred ceEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHH----hcCEEEecc-ccccCchHHHHHHH--cCCCEE
Confidence 356666655432 3445555554432 2333222223333332 246665422 22344667777663 468987
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
+ +.... ..+.+..|..+++..|-+.++|.+.+..++.
T Consensus 301 ~-s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 301 A-TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred E-cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 6 33332 3344667888999999999999999988764
No 149
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=60.11 E-value=60 Score=36.62 Aligned_cols=109 Identities=14% Similarity=0.249 Sum_probs=66.3
Q ss_pred EeCCHHHHHHHHHHHHhCCCe----EEEECC-----------------------HHHHHHHHHhcCCCceEEEEeCCCCC
Q 005719 29 VDDDPTCLKVLENFLRACQYE----VTVTNQ-----------------------AVTALKMLRENRNNFDLVISDVHMPD 81 (681)
Q Consensus 29 VDDD~~~r~iL~~~Le~~gy~----Vt~as~-----------------------a~eALe~L~e~~~~pDLVLlDV~MPd 81 (681)
++++....+.+++.+++.||. |...-+ ..+++++++..-..++++.++==++.
T Consensus 209 ~~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~ 288 (408)
T cd03313 209 LSSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDE 288 (408)
T ss_pred CCChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEEeCCCC
Confidence 367778888889999887664 333333 37777766653334788777654544
Q ss_pred CCHHHHHHHHhccCCCcEEEEEcC---CChHHHHHHHhcCCcE-EEeCCCChHHHHHHHHH
Q 005719 82 MDGFKLLEHVGLEMDLPVIMLSAY---GDTKLVMKGITHGACD-YLLKPVRIEELKNIWQH 138 (681)
Q Consensus 82 mDG~elLe~I~~~~dlPVImLSa~---~d~e~v~kAl~~GA~D-YLlKPvs~eEL~~i~q~ 138 (681)
.| ++-.+.|+.....++.++..+ .+...+.++++.|+++ +++||-...-|...++.
T Consensus 289 ~D-~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite~~~i 348 (408)
T cd03313 289 DD-WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETIEA 348 (408)
T ss_pred cC-HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHH
Confidence 44 444555544432233334443 2577888899888766 56788876555554443
No 150
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=60.04 E-value=95 Score=32.67 Aligned_cols=99 Identities=16% Similarity=0.130 Sum_probs=65.3
Q ss_pred HHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEEEEcCCChHHHHHH
Q 005719 39 LENFLRACQ--YEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL--EMDLPVIMLSAYGDTKLVMKG 114 (681)
Q Consensus 39 L~~~Le~~g--y~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~--~~dlPVImLSa~~d~e~v~kA 114 (681)
+++.|+.-. +-+..........+.+.. ..||.|++|..-...+--++...++. ...+.+|+=....+...+.++
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~~~~--~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~ 80 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEICAG--AGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQL 80 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHHHHh--cCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHH
Confidence 455555422 222233334556666654 35999999998777777676666643 234566666677778899999
Q ss_pred HhcCCcEEEe-CCCChHHHHHHHHHH
Q 005719 115 ITHGACDYLL-KPVRIEELKNIWQHV 139 (681)
Q Consensus 115 l~~GA~DYLl-KPvs~eEL~~i~q~V 139 (681)
+..||+..+. |--+.++++.+++.+
T Consensus 81 Ld~Ga~gIivP~v~s~e~a~~~v~~~ 106 (249)
T TIGR02311 81 LDIGAQTLLVPMIETAEQAEAAVAAT 106 (249)
T ss_pred hCCCCCEEEecCcCCHHHHHHHHHHc
Confidence 9999998765 445677877777664
No 151
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=60.02 E-value=78 Score=33.54 Aligned_cols=101 Identities=13% Similarity=0.095 Sum_probs=67.4
Q ss_pred HHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh--ccCCCcEEEEEcCCChHHHH
Q 005719 37 KVLENFLRACQY--EVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG--LEMDLPVIMLSAYGDTKLVM 112 (681)
Q Consensus 37 ~iL~~~Le~~gy--~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~--~~~dlPVImLSa~~d~e~v~ 112 (681)
..|++.|..-.. -+........+.+.+.. ..||.|++|..--..|--++...++ ....++.|+-....+...+.
T Consensus 8 n~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~--~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~ 85 (256)
T PRK10558 8 NKFKAALAAKQVQIGCWSALANPITTEVLGL--AGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNEPVIIK 85 (256)
T ss_pred HHHHHHHHcCCceEEEEEcCCCcHHHHHHHh--cCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHH
Confidence 346666665222 12222333455666653 3599999999888777777666664 23456777777788899999
Q ss_pred HHHhcCCcEEEeCCC-ChHHHHHHHHHH
Q 005719 113 KGITHGACDYLLKPV-RIEELKNIWQHV 139 (681)
Q Consensus 113 kAl~~GA~DYLlKPv-s~eEL~~i~q~V 139 (681)
++++.||..++.-=+ +.++.+.+++.+
T Consensus 86 r~LD~Ga~giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 86 RLLDIGFYNFLIPFVETAEEARRAVAST 113 (256)
T ss_pred HHhCCCCCeeeecCcCCHHHHHHHHHHc
Confidence 999999999877544 456666666553
No 152
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=60.02 E-value=86 Score=33.09 Aligned_cols=99 Identities=12% Similarity=0.116 Sum_probs=65.8
Q ss_pred HHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh--ccCCCcEEEEEcCCChHHHHHH
Q 005719 39 LENFLRACQY--EVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG--LEMDLPVIMLSAYGDTKLVMKG 114 (681)
Q Consensus 39 L~~~Le~~gy--~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~--~~~dlPVImLSa~~d~e~v~kA 114 (681)
|++.|+.-.. -+..........+++.. ..||.|++|..--.+|--++...++ ....++.|+-....+...+.++
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~e~~a~--~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~ 80 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITTEVLGL--AGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRL 80 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHh--cCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHH
Confidence 4555554222 22222334556666653 3599999999888777766666664 2345666777778889999999
Q ss_pred HhcCCcEEEeCCCC-hHHHHHHHHHH
Q 005719 115 ITHGACDYLLKPVR-IEELKNIWQHV 139 (681)
Q Consensus 115 l~~GA~DYLlKPvs-~eEL~~i~q~V 139 (681)
++.||...+.-=++ .++.+.+++.+
T Consensus 81 LD~Ga~gIivP~v~taeea~~~v~a~ 106 (249)
T TIGR03239 81 LDIGFYNFLIPFVESAEEAERAVAAT 106 (249)
T ss_pred hcCCCCEEEecCcCCHHHHHHHHHHc
Confidence 99999998875544 56666666543
No 153
>PRK12704 phosphodiesterase; Provisional
Probab=59.90 E-value=10 Score=44.21 Aligned_cols=46 Identities=22% Similarity=0.371 Sum_probs=39.8
Q ss_pred CCc-EEEEEcCCChH--HHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 96 DLP-VIMLSAYGDTK--LVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 96 dlP-VImLSa~~d~e--~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
+.| +|++|+.+... .+..+++.++.|+.+||++.+++...++.-+.
T Consensus 248 dtp~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~ 296 (520)
T PRK12704 248 DTPEAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVD 296 (520)
T ss_pred CCCCeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHH
Confidence 455 89999988776 88999999999999999999999988876654
No 154
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=59.88 E-value=82 Score=36.33 Aligned_cols=101 Identities=18% Similarity=0.248 Sum_probs=60.2
Q ss_pred CCcEEEEEeCC----HHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC------------C
Q 005719 22 IGMRVLAVDDD----PTCLKVLENFLRAC-QYEVT--VTNQAVTALKMLRENRNNFDLVISDVHMPD------------M 82 (681)
Q Consensus 22 ~GmRVLIVDDD----~~~r~iL~~~Le~~-gy~Vt--~as~a~eALe~L~e~~~~pDLVLlDV~MPd------------m 82 (681)
.|.++++||.. ......++.+-.+. +..|. .+.+..+|..++.. .+|.|.+-+. |+ .
T Consensus 239 agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a---Gad~i~vg~g-~gs~~~~r~~~~~g~ 314 (486)
T PRK05567 239 AGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA---GADAVKVGIG-PGSICTTRIVAGVGV 314 (486)
T ss_pred hCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc---CCCEEEECCC-CCccccceeecCCCc
Confidence 36788888853 12333333333333 22333 23466677776653 4788765321 21 1
Q ss_pred CHHHHHHHHh---ccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCC
Q 005719 83 DGFKLLEHVG---LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126 (681)
Q Consensus 83 DG~elLe~I~---~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKP 126 (681)
.-++++..+. ...++|||+=..-.....+.+|+.+||+..++--
T Consensus 315 p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G~ 361 (486)
T PRK05567 315 PQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLGS 361 (486)
T ss_pred CHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEECc
Confidence 2244554442 2357899988888899999999999999877643
No 155
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=59.83 E-value=1.6e+02 Score=29.61 Aligned_cols=108 Identities=17% Similarity=0.230 Sum_probs=62.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQY--EVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVI 100 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy--~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVI 100 (681)
.++++|+.+.+. ...+.+.+...+. .|.......+..+.+. ..|+++.-... +.-|..+++.+. ..+|||
T Consensus 209 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~----~ad~~i~ps~~-e~~~~~~~Ea~a--~G~Pvi 280 (348)
T cd03820 209 DWKLRIVGDGPE-REALEALIKELGLEDRVILLGFTKNIEEYYA----KASIFVLTSRF-EGFPMVLLEAMA--FGLPVI 280 (348)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCCeEEEcCCcchHHHHHH----hCCEEEeCccc-cccCHHHHHHHH--cCCCEE
Confidence 456666654432 2334444444432 3444443234444443 25777775444 334667777663 568888
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
+........ ..+..+...++.++.+.+++.+.+..++.
T Consensus 281 ~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~i~~ll~ 318 (348)
T cd03820 281 SFDCPTGPS---EIIEDGVNGLLVPNGDVEALAEALLRLME 318 (348)
T ss_pred EecCCCchH---hhhccCcceEEeCCCCHHHHHHHHHHHHc
Confidence 643322222 33456668899999999999999998864
No 156
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=59.45 E-value=97 Score=31.05 Aligned_cols=68 Identities=22% Similarity=0.166 Sum_probs=45.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 005719 25 RVLAVDDDPTCLKVLENFLRACQYE--VT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG 92 (681)
Q Consensus 25 RVLIVDDD~~~r~iL~~~Le~~gy~--Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~ 92 (681)
+|..||.++...+.+++-++..+.. +. ...+..+++..+......+|+|++|.-.....-.++++.+.
T Consensus 74 ~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~ 144 (189)
T TIGR00095 74 VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCE 144 (189)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHH
Confidence 7999999999999999988877653 33 44455555554432222489999997554433445666653
No 157
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=59.38 E-value=56 Score=29.41 Aligned_cols=71 Identities=18% Similarity=0.128 Sum_probs=47.6
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCCCC-HHHHHHHHh-ccC-CCcEEEE
Q 005719 30 DDDPTCLKVLENFLRACQYEVTVTN---QAVTALKMLRENRNNFDLVISDVHMPDMD-GFKLLEHVG-LEM-DLPVIML 102 (681)
Q Consensus 30 DDD~~~r~iL~~~Le~~gy~Vt~as---~a~eALe~L~e~~~~pDLVLlDV~MPdmD-G~elLe~I~-~~~-dlPVImL 102 (681)
|.++.-...+..+|++.|+++.... ...+.++.+.. ..||+|.+.+.+.... .++.+..++ ..+ +++|++=
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~--~~pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivvG 86 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKE--EDADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVG 86 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHH--cCCCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEEe
Confidence 6677777888899999999998664 44556666665 3599999998775532 344444553 344 5665544
No 158
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=59.03 E-value=35 Score=34.10 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=47.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeC-C-CCCCCH--HHHHHHHhccCCCcEEE
Q 005719 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDV-H-MPDMDG--FKLLEHVGLEMDLPVIM 101 (681)
Q Consensus 26 VLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV-~-MPdmDG--~elLe~I~~~~dlPVIm 101 (681)
|||||....+-..+.++|+.+|+.|.+...-...++.+.. ..||.||+-- - -|..++ .++++.+ ...+||+-
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iilsgGpg~p~~~~~~~~~i~~~--~~~~PvLG 77 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEA--LLPLLIVISPGPCTPNEAGISLEAIRHF--AGKLPILG 77 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHh--cCCCEEEEcCCCCChhhcchhHHHHHHh--ccCCCEEE
Confidence 8999999999999999999999998877643222333332 2478666521 1 111122 3344443 34689988
Q ss_pred EEc
Q 005719 102 LSA 104 (681)
Q Consensus 102 LSa 104 (681)
++-
T Consensus 78 IC~ 80 (188)
T TIGR00566 78 VCL 80 (188)
T ss_pred ECH
Confidence 874
No 159
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=58.60 E-value=82 Score=35.82 Aligned_cols=92 Identities=14% Similarity=0.088 Sum_probs=54.3
Q ss_pred CCcEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCC--CCC-CCHHHHHHHH-h-c
Q 005719 22 IGMRVLAVDDDPTC---LKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVH--MPD-MDGFKLLEHV-G-L 93 (681)
Q Consensus 22 ~GmRVLIVDDD~~~---r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~--MPd-mDG~elLe~I-~-~ 93 (681)
.|.+|.+|+-|+.- ...|..+.+..+..+..+.+..+....+... ..+|+||+|.- .+. ....+.++.+ . .
T Consensus 250 ~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~ 328 (424)
T PRK05703 250 GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-RDCDVILIDTAGRSQRDKRLIEELKALIEFS 328 (424)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-CCCCEEEEeCCCCCCCCHHHHHHHHHHHhcc
Confidence 36799999988742 3345555555677777777777766666543 35899999973 111 1223334333 3 2
Q ss_pred cCCC-cEEEEEcCCChHHHHHH
Q 005719 94 EMDL-PVIMLSAYGDTKLVMKG 114 (681)
Q Consensus 94 ~~dl-PVImLSa~~d~e~v~kA 114 (681)
...+ .++++++........+.
T Consensus 329 ~~~~~~~LVl~a~~~~~~l~~~ 350 (424)
T PRK05703 329 GEPIDVYLVLSATTKYEDLKDI 350 (424)
T ss_pred CCCCeEEEEEECCCCHHHHHHH
Confidence 2223 36677776655554443
No 160
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=58.51 E-value=34 Score=36.19 Aligned_cols=57 Identities=21% Similarity=0.318 Sum_probs=44.4
Q ss_pred CHHHHHHHHhcc-CCCcEEEEEcCCC------hHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 005719 83 DGFKLLEHVGLE-MDLPVIMLSAYGD------TKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139 (681)
Q Consensus 83 DG~elLe~I~~~-~dlPVImLSa~~d------~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~V 139 (681)
+.+++++.++.. .++|+++|+-... ...+.++.++|++.++......++....+..+
T Consensus 73 ~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~ 136 (256)
T TIGR00262 73 KCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAA 136 (256)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHH
Confidence 356677777655 6899888877654 67788999999999999988888877766655
No 161
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=58.35 E-value=31 Score=36.75 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=44.9
Q ss_pred CHHHHHHHHhccCCCcEEEEEcCC------ChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 005719 83 DGFKLLEHVGLEMDLPVIMLSAYG------DTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139 (681)
Q Consensus 83 DG~elLe~I~~~~dlPVImLSa~~------d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~V 139 (681)
+.+++++.++...++|+|+|+-.. -...+.++.+.|++.+++-.+..+|....++.+
T Consensus 78 ~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~ 140 (263)
T CHL00200 78 KILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVC 140 (263)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 356777788766789999998663 355788999999999999988888877666655
No 162
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=57.62 E-value=99 Score=33.10 Aligned_cols=100 Identities=12% Similarity=0.136 Sum_probs=66.2
Q ss_pred HHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh--ccCCCcEEEEEcCCChHHHHH
Q 005719 38 VLENFLRACQY--EVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG--LEMDLPVIMLSAYGDTKLVMK 113 (681)
Q Consensus 38 iL~~~Le~~gy--~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~--~~~dlPVImLSa~~d~e~v~k 113 (681)
.|++.|+.-.. -+........+.+.+.. ..||.|++|..--..+--++...++ ....++.|+-....+...+.+
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~--~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~r 85 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAAT--SGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIKQ 85 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHH--cCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHHH
Confidence 36666665222 12222333455666653 3599999999887777666665553 234566666777788899999
Q ss_pred HHhcCCcEEEeCCCC-hHHHHHHHHHH
Q 005719 114 GITHGACDYLLKPVR-IEELKNIWQHV 139 (681)
Q Consensus 114 Al~~GA~DYLlKPvs-~eEL~~i~q~V 139 (681)
+++.||...+.-=++ .++.+.+++.+
T Consensus 86 ~LD~GA~GIivP~V~saeeA~~~V~a~ 112 (267)
T PRK10128 86 VLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_pred HhCCCCCeeEecCcCCHHHHHHHHHhc
Confidence 999999999886654 46666666553
No 163
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=57.26 E-value=32 Score=36.46 Aligned_cols=57 Identities=16% Similarity=0.395 Sum_probs=44.7
Q ss_pred CHHHHHHHHh-ccCCCcEEEEEcC------CChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 005719 83 DGFKLLEHVG-LEMDLPVIMLSAY------GDTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139 (681)
Q Consensus 83 DG~elLe~I~-~~~dlPVImLSa~------~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~V 139 (681)
+.+++++.++ ...++|+|+|+-. .-.....++.+.|++..|+-.+..+|....+..+
T Consensus 75 ~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~ 138 (258)
T PRK13111 75 DVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAA 138 (258)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 3467777776 5578999999854 3445688899999999999888888888777665
No 164
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=57.24 E-value=1.1e+02 Score=34.80 Aligned_cols=101 Identities=14% Similarity=0.145 Sum_probs=60.1
Q ss_pred CCcEEEEEeC---CHHHHHHHHHHHHh-C-CCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC---------C--CC
Q 005719 22 IGMRVLAVDD---DPTCLKVLENFLRA-C-QYEVT--VTNQAVTALKMLRENRNNFDLVISDVHMP---------D--MD 83 (681)
Q Consensus 22 ~GmRVLIVDD---D~~~r~iL~~~Le~-~-gy~Vt--~as~a~eALe~L~e~~~~pDLVLlDV~MP---------d--mD 83 (681)
.|.-|++||- +......+.+.+++ + +..+. -+.+..+|..++.. .+|.|.+-+.-- + ..
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a---GaD~I~vG~g~Gs~c~tr~~~g~g~p 240 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV---GADCLKVGIGPGSICTTRIVAGVGVP 240 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc---CCCEEEECCCCCcCCcceeecCCCCC
Confidence 4677888774 22222222233333 2 22232 25677777777653 478887543110 0 01
Q ss_pred HHHHH---HHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 84 GFKLL---EHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 84 G~elL---e~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
-+.++ ..+.....+|||+=..-.....+.+|+.+||+.+++-
T Consensus 241 ~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 241 QITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIG 285 (404)
T ss_pred hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 23333 3333345799999888899999999999999998765
No 165
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=56.88 E-value=1.1e+02 Score=35.08 Aligned_cols=56 Identities=14% Similarity=0.271 Sum_probs=38.0
Q ss_pred CCcEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcC--CCceEEEEeC
Q 005719 22 IGMRVLAVDDDPT---CLKVLENFLRACQYEVTVTNQAVTALKMLRENR--NNFDLVISDV 77 (681)
Q Consensus 22 ~GmRVLIVDDD~~---~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~--~~pDLVLlDV 77 (681)
.|.+|++|+-|+. ....|+.+.+..+..+..+.+..+..+.+...+ ..+|+||+|.
T Consensus 268 ~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDT 328 (436)
T PRK11889 268 KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT 328 (436)
T ss_pred cCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 4678999998864 344556665667888887777665555553322 2589999996
No 166
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.83 E-value=58 Score=34.92 Aligned_cols=99 Identities=22% Similarity=0.322 Sum_probs=57.7
Q ss_pred cEEEEEe--CCH---HHHHHHHHHHHhCCCeEEEECCHHHHHHHH------HhcCCCceEEEEeCCCCCCCHH--HHHHH
Q 005719 24 MRVLAVD--DDP---TCLKVLENFLRACQYEVTVTNQAVTALKML------RENRNNFDLVISDVHMPDMDGF--KLLEH 90 (681)
Q Consensus 24 mRVLIVD--DD~---~~r~iL~~~Le~~gy~Vt~as~a~eALe~L------~e~~~~pDLVLlDV~MPdmDG~--elLe~ 90 (681)
|||.||- ..+ .....+.++|+..+++|.+.....+.+... ......+|+||+ -+.||. ++++
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----iGGDGTlL~a~~- 75 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIA----IGGDGTILRIEH- 75 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEE----EeCcHHHHHHHH-
Confidence 6788872 222 334556666777788888754322221100 001124788777 477884 3333
Q ss_pred HhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 91 VGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 91 I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
+ ...++||+.+.. |-.+|+. .+..+++...+.++++.
T Consensus 76 ~-~~~~~pi~gIn~-------------G~lGFl~-~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 76 K-TKKDIPILGINM-------------GTLGFLT-EVEPEETFFALSRLLEG 112 (277)
T ss_pred h-cCCCCeEEEEeC-------------CCCCccc-cCCHHHHHHHHHHHHcC
Confidence 2 234789887764 3345664 67788999888888754
No 167
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=56.67 E-value=1.2e+02 Score=34.23 Aligned_cols=105 Identities=21% Similarity=0.304 Sum_probs=60.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTN--QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVI 100 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as--~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVI 100 (681)
+++++||.|.+. +..|+++.+. ..|.... ...+..+.+.. .|++++-- ..+.-|+.++|.+. ..+|||
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~--~~V~f~G~v~~~ev~~~~~~----aDv~V~pS-~~E~~g~~vlEAmA--~G~PVI 359 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAG--TPTVFTGMLQGDELSQAYAS----GDVFVMPS-ESETLGFVVLEAMA--SGVPVV 359 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhcc--CCeEEeccCCHHHHHHHHHH----CCEEEECC-cccccCcHHHHHHH--cCCCEE
Confidence 456666665443 3444444433 2333322 22444444432 46766532 23344566777663 468998
Q ss_pred EEEcCCChHHHHHHHhc---CCcEEEeCCCChHHHHHHHHHHHH
Q 005719 101 MLSAYGDTKLVMKGITH---GACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~---GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
+..... ..+.+.. |-.+++..|-+.++|.+.+..++.
T Consensus 360 ~s~~gg----~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 360 AARAGG----IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred EcCCCC----cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 543322 2333455 888999999999999999988864
No 168
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=55.61 E-value=1.1e+02 Score=31.77 Aligned_cols=68 Identities=22% Similarity=0.272 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCC-CH--HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 56 AVTALKMLRENRNNFDLVISDVHMPDM-DG--FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 56 a~eALe~L~e~~~~pDLVLlDV~MPdm-DG--~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
..+.++.+... .-.++++|+..-++ .| +++++.+.....+|||+-..-...+.+.+++..||+..++-
T Consensus 148 ~~~~~~~~~~~--~~~li~~di~~~G~~~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG 218 (233)
T cd04723 148 PEELLRRLAKW--PEELIVLDIDRVGSGQGPDLELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALVA 218 (233)
T ss_pred HHHHHHHHHHh--CCeEEEEEcCccccCCCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEEe
Confidence 45556666543 23699999976542 23 67788886667899999999999999999999999988753
No 169
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=55.58 E-value=50 Score=35.59 Aligned_cols=93 Identities=14% Similarity=0.151 Sum_probs=56.6
Q ss_pred EEEEeCCHHHHH---HHHHHHH---h-CC-CeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 005719 26 VLAVDDDPTCLK---VLENFLR---A-CQ-YEV-TVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMD 96 (681)
Q Consensus 26 VLIVDDD~~~r~---iL~~~Le---~-~g-y~V-t~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~d 96 (681)
|||-|++-...- .+.+.++ + .. ..| +.+.+..+|.+.+.. .+|+|++| +|+-.+-.++++.++....
T Consensus 159 ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~---GaDiI~lD-n~~~e~l~~~v~~l~~~~~ 234 (277)
T TIGR01334 159 LLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQALTVLQA---SPDILQLD-KFTPQQLHHLHERLKFFDH 234 (277)
T ss_pred heehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc---CcCEEEEC-CCCHHHHHHHHHHHhccCC
Confidence 677676655443 3333332 2 21 222 356788999998863 48999999 3443333444444432222
Q ss_pred CcEEEEEcCCChHHHHHHHhcCCcEE
Q 005719 97 LPVIMLSAYGDTKLVMKGITHGACDY 122 (681)
Q Consensus 97 lPVImLSa~~d~e~v~kAl~~GA~DY 122 (681)
-.+|-.++.-+.+.+......|++-+
T Consensus 235 ~~~leasGGI~~~ni~~ya~~GvD~i 260 (277)
T TIGR01334 235 IPTLAAAGGINPENIADYIEAGIDLF 260 (277)
T ss_pred CEEEEEECCCCHHHHHHHHhcCCCEE
Confidence 33667777888888888888888764
No 170
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.34 E-value=1.1e+02 Score=33.02 Aligned_cols=93 Identities=17% Similarity=0.107 Sum_probs=58.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhC----C-CeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC--CC
Q 005719 26 VLAVDDDPTCLKVLENFLRAC----Q-YEV-TVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEM--DL 97 (681)
Q Consensus 26 VLIVDDD~~~r~iL~~~Le~~----g-y~V-t~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~--dl 97 (681)
|||-|++-... .+.+.++.. . ..| +.+.+..++.+.+.. .+|+|++|=..|+ +--++.+.++... .-
T Consensus 157 vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~a---gaDiI~LDn~~~e-~l~~~v~~l~~~~~~~~ 231 (278)
T PRK08385 157 ILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKA---GADIIMLDNMTPE-EIREVIEALKREGLRER 231 (278)
T ss_pred EEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CcCEEEECCCCHH-HHHHHHHHHHhcCcCCC
Confidence 78888886655 565655432 1 223 357889999999863 4799999954332 2222333332211 23
Q ss_pred cEEEEEcCCChHHHHHHHhcCCcEEE
Q 005719 98 PVIMLSAYGDTKLVMKGITHGACDYL 123 (681)
Q Consensus 98 PVImLSa~~d~e~v~kAl~~GA~DYL 123 (681)
..|..++.-+.+.+.+....|+|.+-
T Consensus 232 ~~leaSGGI~~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 232 VKIEVSGGITPENIEEYAKLDVDVIS 257 (278)
T ss_pred EEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 45667777788889888899987653
No 171
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=55.31 E-value=14 Score=37.34 Aligned_cols=86 Identities=13% Similarity=0.182 Sum_probs=53.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCC--CCCC--HHHHHHHHhccCCCcEEE
Q 005719 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHM--PDMD--GFKLLEHVGLEMDLPVIM 101 (681)
Q Consensus 26 VLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~M--PdmD--G~elLe~I~~~~dlPVIm 101 (681)
|||||....+-..|..+|++.|+++.++......++.+.. ..||.||+---- |... -.++++.+ ...+||+-
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iIlsgGP~~p~~~~~~~~~i~~~--~~~~PvLG 77 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIEN--MKPDFLMISPGPCSPNEAGISMEVIRYF--AGKIPIFG 77 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhh--CCCCEEEECCCCCChHhCCCchHHHHHh--cCCCCEEE
Confidence 8999999999999999999999999887755333333332 248888874221 1111 12233322 35689888
Q ss_pred EEcCCChHHHHHHHhcCC
Q 005719 102 LSAYGDTKLVMKGITHGA 119 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA 119 (681)
++- ....-+...|+
T Consensus 78 ICl----G~Qlla~~lGg 91 (195)
T PRK07649 78 VCL----GHQSIAQVFGG 91 (195)
T ss_pred EcH----HHHHHHHHcCC
Confidence 763 23333444555
No 172
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=55.19 E-value=80 Score=30.46 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeCCCCC--------CCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 54 NQAVTALKMLRENRNNFDLVISDVHMPD--------MDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 54 s~a~eALe~L~e~~~~pDLVLlDV~MPd--------mDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
.+..++.+.+. ..+|.|++...-|. ..+++.++.+....++||++..+- ..+.+.+++..||+.+..-
T Consensus 103 ~t~~~~~~~~~---~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~g 178 (196)
T cd00564 103 HSLEEALRAEE---LGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGI-TPENAAEVLAAGADGVAVI 178 (196)
T ss_pred CCHHHHHHHhh---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEEEEe
Confidence 44555555543 24899988654332 345788888765578999988766 4578888999999987654
No 173
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=55.01 E-value=1.1e+02 Score=33.47 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=56.6
Q ss_pred CCcEEEEEeC----CHHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC------------C
Q 005719 22 IGMRVLAVDD----DPTCLKVLENFLRACQ-YEVT--VTNQAVTALKMLRENRNNFDLVISDVHMPD------------M 82 (681)
Q Consensus 22 ~GmRVLIVDD----D~~~r~iL~~~Le~~g-y~Vt--~as~a~eALe~L~e~~~~pDLVLlDV~MPd------------m 82 (681)
.|.++++||- .....+.++.+=+... ..|. .+.+...|..++. ...|.|.+.+ -|+ .
T Consensus 105 agv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~---aGaD~I~vg~-g~G~~~~t~~~~g~g~ 180 (325)
T cd00381 105 AGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLID---AGADGVKVGI-GPGSICTTRIVTGVGV 180 (325)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHh---cCCCEEEECC-CCCcCcccceeCCCCC
Confidence 3667777763 2223333333322222 2332 2455666666654 3478887632 111 1
Q ss_pred CHHHHHHHH---hccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 83 DG~elLe~I---~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
.-+.++..+ ....++|||.--.-.+...+.+++..||+...+-
T Consensus 181 p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~VmiG 226 (325)
T cd00381 181 PQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVMLG 226 (325)
T ss_pred CHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEec
Confidence 123333333 2234689987777778899999999999988763
No 174
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=55.01 E-value=24 Score=35.95 Aligned_cols=53 Identities=38% Similarity=0.492 Sum_probs=39.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CeEE-EECCHHHHHHHHHhcCCCceEEEEeC
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQ--YEVT-VTNQAVTALKMLRENRNNFDLVISDV 77 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~g--y~Vt-~as~a~eALe~L~e~~~~pDLVLlDV 77 (681)
-+|++||-|.....+|++-++.++ -++. ...++..+|..+... ..||+|++|.
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~-~~FDlVflDP 122 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTR-EPFDLVFLDP 122 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCC-CcccEEEeCC
Confidence 479999999999999999998876 3343 344555666655432 2599999996
No 175
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=54.75 E-value=45 Score=35.29 Aligned_cols=80 Identities=25% Similarity=0.243 Sum_probs=49.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-------CHHHHHHHHHhcCCCceEEEEeCCCCCCCH------------
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTN-------QAVTALKMLRENRNNFDLVISDVHMPDMDG------------ 84 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as-------~a~eALe~L~e~~~~pDLVLlDV~MPdmDG------------ 84 (681)
|||||+..+-.....|.+.|+..+++|.... +..+..+.+... .||+||--.-+..-+.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~~--~pd~Vin~aa~~~~~~ce~~p~~a~~iN 78 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEAF--KPDVVINCAAYTNVDACEKNPEEAYAIN 78 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHHH----SEEEE------HHHHHHSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHHh--CCCeEeccceeecHHhhhhChhhhHHHh
Confidence 7999999999999999999998888888773 344444555544 3899987664432221
Q ss_pred ---HHHHHHHhccCCCcEEEEEcC
Q 005719 85 ---FKLLEHVGLEMDLPVIMLSAY 105 (681)
Q Consensus 85 ---~elLe~I~~~~dlPVImLSa~ 105 (681)
...+..+.....+++|.+|..
T Consensus 79 ~~~~~~la~~~~~~~~~li~~STd 102 (286)
T PF04321_consen 79 VDATKNLAEACKERGARLIHISTD 102 (286)
T ss_dssp THHHHHHHHHHHHCT-EEEEEEEG
T ss_pred hHHHHHHHHHHHHcCCcEEEeecc
Confidence 111222223467899999875
No 176
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.73 E-value=62 Score=35.10 Aligned_cols=94 Identities=14% Similarity=0.030 Sum_probs=55.6
Q ss_pred EEEEeCCHHHHHHHHHHHH----hCC--CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 005719 26 VLAVDDDPTCLKVLENFLR----ACQ--YEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPV 99 (681)
Q Consensus 26 VLIVDDD~~~r~iL~~~Le----~~g--y~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPV 99 (681)
|||-|.+-...-.+.+.++ ... .-.+.+.+..++.+.+.. .+|+|++| +|.-.+--++++.++....-..
T Consensus 173 ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~---gaDiI~LD-nm~~e~vk~av~~~~~~~~~v~ 248 (289)
T PRK07896 173 ALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLAE---GAELVLLD-NFPVWQTQEAVQRRDARAPTVL 248 (289)
T ss_pred eeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHc---CCCEEEeC-CCCHHHHHHHHHHHhccCCCEE
Confidence 6666655444323333333 222 233457889999999863 48999999 4432112222333332333346
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEE
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYL 123 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYL 123 (681)
|..|+.-+.+.+.+....|++.+-
T Consensus 249 ieaSGGI~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 249 LESSGGLTLDTAAAYAETGVDYLA 272 (289)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEE
Confidence 777878888889888899987653
No 177
>PRK13566 anthranilate synthase; Provisional
Probab=54.58 E-value=29 Score=42.11 Aligned_cols=79 Identities=29% Similarity=0.402 Sum_probs=51.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeC--CCCC-CCHHHHHHHHhccCCCc
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDV--HMPD-MDGFKLLEHVGLEMDLP 98 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV--~MPd-mDG~elLe~I~~~~dlP 98 (681)
.|+||||||........|.++|++.|++|+++..... .+.+.. ..||.||+-- ..|. ..-.++++.+ ...++|
T Consensus 525 ~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~--~~~DgVVLsgGpgsp~d~~~~~lI~~a-~~~~iP 600 (720)
T PRK13566 525 EGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDR--VNPDLVVLSPGPGRPSDFDCKATIDAA-LARNLP 600 (720)
T ss_pred CCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhh--cCCCEEEECCCCCChhhCCcHHHHHHH-HHCCCc
Confidence 5789999999988899999999999999988765432 122222 2489877621 1121 1223344433 235799
Q ss_pred EEEEEc
Q 005719 99 VIMLSA 104 (681)
Q Consensus 99 VImLSa 104 (681)
|+-++-
T Consensus 601 ILGICl 606 (720)
T PRK13566 601 IFGVCL 606 (720)
T ss_pred EEEEeh
Confidence 988874
No 178
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=54.33 E-value=2.1e+02 Score=29.72 Aligned_cols=108 Identities=20% Similarity=0.266 Sum_probs=62.3
Q ss_pred CcEEEEEeCCH---HHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 005719 23 GMRVLAVDDDP---TCLKVLENFLRACQY--EVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDL 97 (681)
Q Consensus 23 GmRVLIVDDD~---~~r~iL~~~Le~~gy--~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dl 97 (681)
.++++|+.+.+ .....+.+.+++.+. .|.......+..+.+. ..|++|+=-.-++.-|..+++.+. ..+
T Consensus 216 ~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~----~ad~~i~ps~~~e~~~~~l~EA~a--~G~ 289 (355)
T cd03819 216 DVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYA----LADIVVSASTEPEAFGRTAVEAQA--MGR 289 (355)
T ss_pred CeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHH----hCCEEEecCCCCCCCchHHHHHHh--cCC
Confidence 35666665432 233334444444332 3554444333333333 257776643345556677777763 568
Q ss_pred cEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 005719 98 PVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140 (681)
Q Consensus 98 PVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vl 140 (681)
|||+. .... ..+.+..+.++++..|-+.+++.+.+..++
T Consensus 290 PvI~~-~~~~---~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~ 328 (355)
T cd03819 290 PVIAS-DHGG---ARETVRPGETGLLVPPGDAEALAQALDQIL 328 (355)
T ss_pred CEEEc-CCCC---cHHHHhCCCceEEeCCCCHHHHHHHHHHHH
Confidence 98754 3322 234566777899999999999999886544
No 179
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=53.84 E-value=2.6e+02 Score=29.55 Aligned_cols=90 Identities=18% Similarity=0.107 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeC---CCCCCCHHHHHHHH-hccC-CCcEEEEEcC
Q 005719 32 DPTCLKVLENFLRACQYEVT-VTNQAVTALKMLRENRNNFDLVISDV---HMPDMDGFKLLEHV-GLEM-DLPVIMLSAY 105 (681)
Q Consensus 32 D~~~r~iL~~~Le~~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV---~MPdmDG~elLe~I-~~~~-dlPVImLSa~ 105 (681)
++.....+.+..+..|..+. .+.+..|+.+.+. ..+|+|-+.- .....| ++..+.+ ...+ ..++|..++-
T Consensus 145 ~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~---~gadiIgin~rdl~~~~~d-~~~~~~l~~~~p~~~~vIaegGI 220 (260)
T PRK00278 145 DDEQLKELLDYAHSLGLDVLVEVHDEEELERALK---LGAPLIGINNRNLKTFEVD-LETTERLAPLIPSDRLVVSESGI 220 (260)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH---cCCCEEEECCCCcccccCC-HHHHHHHHHhCCCCCEEEEEeCC
Confidence 34445555555566677654 5677777766554 2478876532 011222 5555555 3333 3589999999
Q ss_pred CChHHHHHHHhcCCcEEEeC
Q 005719 106 GDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 106 ~d~e~v~kAl~~GA~DYLlK 125 (681)
...+.+.+++..||+.+++-
T Consensus 221 ~t~ed~~~~~~~Gad~vlVG 240 (260)
T PRK00278 221 FTPEDLKRLAKAGADAVLVG 240 (260)
T ss_pred CCHHHHHHHHHcCCCEEEEC
Confidence 89999999999999998653
No 180
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=53.71 E-value=1.2e+02 Score=31.95 Aligned_cols=106 Identities=20% Similarity=0.287 Sum_probs=61.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQY--EVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIM 101 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy--~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVIm 101 (681)
.+++|+.+.+. ...++++.++.+. .|.......+..+.+. ..|++++=.. .+.-|+.+++.+. ..+|||+
T Consensus 228 ~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~----~~d~~v~ps~-~E~~~~~~~EAma--~g~PvI~ 299 (371)
T cd04962 228 ARLLLVGDGPE-RSPAERLARELGLQDDVLFLGKQDHVEELLS----IADLFLLPSE-KESFGLAALEAMA--CGVPVVA 299 (371)
T ss_pred ceEEEEcCCcC-HHHHHHHHHHcCCCceEEEecCcccHHHHHH----hcCEEEeCCC-cCCCccHHHHHHH--cCCCEEE
Confidence 35555544332 2344445544432 3444443333333332 2467665432 3445667777663 5689886
Q ss_pred EEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 102 LSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
.. .. ...+.+..|..+|+.+|-+.+++.+.+..++.
T Consensus 300 s~-~~---~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 300 SN-AG---GIPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred eC-CC---CchhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 42 22 23455777888999999999999998887764
No 181
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=53.69 E-value=77 Score=30.00 Aligned_cols=56 Identities=20% Similarity=0.074 Sum_probs=40.4
Q ss_pred CceEEEEeCCCCCCCH-------HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 69 NFDLVISDVHMPDMDG-------FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 69 ~pDLVLlDV~MPdmDG-------~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
..|.|.++-..+...+ ...++.+.....+||++...-...+.+.++++.||+.+..
T Consensus 136 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 136 GVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 4788888776664332 2344445556789999988887778899999999987764
No 182
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=53.43 E-value=1.1e+02 Score=34.88 Aligned_cols=101 Identities=15% Similarity=0.201 Sum_probs=60.9
Q ss_pred CCcEEEEEeC---CHHHHHHHHHHHHhC--CCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC------------C
Q 005719 22 IGMRVLAVDD---DPTCLKVLENFLRAC--QYEVT--VTNQAVTALKMLRENRNNFDLVISDVHMPD------------M 82 (681)
Q Consensus 22 ~GmRVLIVDD---D~~~r~iL~~~Le~~--gy~Vt--~as~a~eALe~L~e~~~~pDLVLlDV~MPd------------m 82 (681)
.|..+++||- +........+.+++. ...|. .+.+..+|..++.. .+|.|.+-+. |+ .
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~a---Gad~i~vg~g-~G~~~~t~~~~~~g~ 310 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDA---GADGLRVGIG-PGSICTTRIVAGVGV 310 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHh---CCCEEEECCC-CCcCCccceecCCCc
Confidence 4778888887 443333333334332 22333 24566777666652 4777755431 11 1
Q ss_pred CHHHHHHHH---hccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCC
Q 005719 83 DGFKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126 (681)
Q Consensus 83 DG~elLe~I---~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKP 126 (681)
.-+.++..+ ....++|||.-..-.....+.+|+.+||+....--
T Consensus 311 p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~ 357 (450)
T TIGR01302 311 PQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGS 357 (450)
T ss_pred cHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 123444333 23467899988888889999999999999987754
No 183
>PRK10742 putative methyltransferase; Provisional
Probab=53.04 E-value=1.2e+02 Score=32.46 Aligned_cols=57 Identities=21% Similarity=0.252 Sum_probs=41.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC------CC----eEEE-ECCHHHHHHHHHhcCCCceEEEEeCCCCCC
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRAC------QY----EVTV-TNQAVTALKMLRENRNNFDLVISDVHMPDM 82 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~------gy----~Vt~-as~a~eALe~L~e~~~~pDLVLlDV~MPdm 82 (681)
|-+|..||.++.+...|++-|++. +- ++.+ ..+..+.|+. ....||+|++|-.-|.-
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~---~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD---ITPRPQVVYLDPMFPHK 177 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh---CCCCCcEEEECCCCCCC
Confidence 568999999999999999999874 21 2332 3455555543 33469999999988863
No 184
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=53.03 E-value=89 Score=32.17 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHH
Q 005719 79 MPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKN 134 (681)
Q Consensus 79 MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~ 134 (681)
|-.-+.++.++.++....--+|-.-.--+.+.+.+++++||. |++-|.-..++.+
T Consensus 41 ~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~-FivsP~~~~~v~~ 95 (204)
T TIGR01182 41 LRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQ-FIVSPGLTPELAK 95 (204)
T ss_pred CCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCC-EEECCCCCHHHHH
Confidence 333456777777754332223334445678889999999995 5666765555443
No 185
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=52.50 E-value=1.1e+02 Score=27.63 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=15.2
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEE
Q 005719 30 DDDPTCLKVLENFLRACQYEVTVT 53 (681)
Q Consensus 30 DDD~~~r~iL~~~Le~~gy~Vt~a 53 (681)
|.+......+.+.|...||.+...
T Consensus 9 ~~~k~~~~~~~~~l~~~G~~l~aT 32 (110)
T cd01424 9 DRDKPEAVEIAKRLAELGFKLVAT 32 (110)
T ss_pred cCcHhHHHHHHHHHHHCCCEEEEc
Confidence 445555556666677778888644
No 186
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=52.50 E-value=1.1e+02 Score=30.93 Aligned_cols=66 Identities=11% Similarity=0.186 Sum_probs=47.4
Q ss_pred HHHHHHHHhcCCCce-EEEEeCCCCC-CCH--HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcC-CcEEEe
Q 005719 57 VTALKMLRENRNNFD-LVISDVHMPD-MDG--FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHG-ACDYLL 124 (681)
Q Consensus 57 ~eALe~L~e~~~~pD-LVLlDV~MPd-mDG--~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~G-A~DYLl 124 (681)
.+..+.+.+. .++ +++.++..-+ ..| +++++.+.....+|||.-..-.+.+.+.++++.| |+..++
T Consensus 149 ~e~~~~~~~~--g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 149 EDLAKRFEDA--GVKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHHhc--CCCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 4444545432 355 8888876543 234 6788888666679999988888999999999988 888775
No 187
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=52.17 E-value=1.8e+02 Score=29.47 Aligned_cols=67 Identities=13% Similarity=0.196 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCCc-eEEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 56 AVTALKMLRENRNNF-DLVISDVHMPDM---DGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 56 a~eALe~L~e~~~~p-DLVLlDV~MPdm---DG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
..+.++.+.+. .+ -+++.|+..-+. -.+++++.+....++|||+-..-.+.+.+.++++.||+.+++
T Consensus 148 ~~~~~~~~~~~--ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 148 LEELAKRFEEL--GVKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred HHHHHHHHHHc--CCCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 34445555432 23 356777754322 236788888766789999998888889899999999999765
No 188
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=52.14 E-value=80 Score=34.28 Aligned_cols=60 Identities=18% Similarity=0.082 Sum_probs=44.6
Q ss_pred CHHHHHHHHhccCCCcEE--EEEcCCChHHHHHHHhcCCcEEEe-----CCCChHHHHHHHHHHHHH
Q 005719 83 DGFKLLEHVGLEMDLPVI--MLSAYGDTKLVMKGITHGACDYLL-----KPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 83 DG~elLe~I~~~~dlPVI--mLSa~~d~e~v~kAl~~GA~DYLl-----KPvs~eEL~~i~q~Vlrr 142 (681)
-++++++.+.....+||| ....-..++.+..+++.||+.+++ |.-++.+....+...+.+
T Consensus 184 ~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~ 250 (287)
T TIGR00343 184 VPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH 250 (287)
T ss_pred CCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH
Confidence 578889888666679998 666667899999999999999854 444566665555555543
No 189
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=51.82 E-value=51 Score=32.84 Aligned_cols=95 Identities=15% Similarity=0.057 Sum_probs=57.4
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CCCe--E-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 005719 26 VLAVDDDPTCLKVLENFLRA----CQYE--V-TVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLP 98 (681)
Q Consensus 26 VLIVDDD~~~r~iL~~~Le~----~gy~--V-t~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlP 98 (681)
|||-|.+-...-.+.+.+++ .... + +.+.+..++.+++.. .+|+|.+|-.-| .+--++++.++....-.
T Consensus 53 ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~---g~d~I~lD~~~~-~~~~~~v~~l~~~~~~v 128 (169)
T PF01729_consen 53 ILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEA---GADIIMLDNMSP-EDLKEAVEELRELNPRV 128 (169)
T ss_dssp EEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHT---T-SEEEEES-CH-HHHHHHHHHHHHHTTTS
T ss_pred EEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHh---CCCEEEecCcCH-HHHHHHHHHHhhcCCcE
Confidence 56666665554445554432 2222 3 357788999998874 489999996544 12223334343333447
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
.|.+++.-+.+.+.+..+.|++.+-+
T Consensus 129 ~ie~SGGI~~~ni~~ya~~gvD~isv 154 (169)
T PF01729_consen 129 KIEASGGITLENIAEYAKTGVDVISV 154 (169)
T ss_dssp EEEEESSSSTTTHHHHHHTT-SEEEE
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEEc
Confidence 78888888888888888999876643
No 190
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=51.72 E-value=83 Score=35.27 Aligned_cols=111 Identities=19% Similarity=0.221 Sum_probs=63.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH-hccCCCcEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHV-GLEMDLPVIM 101 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~-Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I-~~~~dlPVIm 101 (681)
-+|+.+|-++...+.+++-++..+.. +.+.. .+|...+......||+|++|. ++ ....++..+ .....--+|.
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~--~Da~~~l~~~~~~fDvIdlDP--fG-s~~~fld~al~~~~~~glL~ 144 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPN--EDAANVLRYRNRKFHVIDIDP--FG-TPAPFVDSAIQASAERGLLL 144 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEc--hhHHHHHHHhCCCCCEEEeCC--CC-CcHHHHHHHHHhcccCCEEE
Confidence 47999999999999999988765543 33322 233333433234599999997 43 223455543 3334456888
Q ss_pred EEcCCChHH----HHHHHh-cCCcEEEeC-CCC-hHHHHHHHHHHHH
Q 005719 102 LSAYGDTKL----VMKGIT-HGACDYLLK-PVR-IEELKNIWQHVIR 141 (681)
Q Consensus 102 LSa~~d~e~----v~kAl~-~GA~DYLlK-Pvs-~eEL~~i~q~Vlr 141 (681)
+|+.+.... ...+++ .||. ..| |+. +--|+-++..+.|
T Consensus 145 vTaTD~~~L~G~~~~~~~rkYga~--~~~~~~~~E~glRiLlg~i~r 189 (374)
T TIGR00308 145 VTATDTSALCGNYPKSCLRKYGAN--PVKTESCHESALRLLLGFVKR 189 (374)
T ss_pred EEecccHHhcCCChHHHHHHhCCc--ccCCcchHHHHHHHHHHHHHH
Confidence 887665443 334443 3542 223 332 2345555555544
No 191
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=51.65 E-value=1.6e+02 Score=31.57 Aligned_cols=111 Identities=15% Similarity=0.169 Sum_probs=62.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQY--EVTVTN---QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDL 97 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy--~Vt~as---~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dl 97 (681)
.++++||.+-+. +..++++.+..+. .|.... +..+.+..+.. ..|++++--. -+.-|+.++|.+. ..+
T Consensus 210 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~---~~d~~v~~s~-~Egf~~~~lEAma--~G~ 282 (359)
T PRK09922 210 EWQLHIIGDGSD-FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIK---NVSALLLTSK-FEGFPMTLLEAMS--YGI 282 (359)
T ss_pred CeEEEEEeCCcc-HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHh---cCcEEEECCc-ccCcChHHHHHHH--cCC
Confidence 456666655443 3445555554432 344432 22222222211 2466655222 2334666777663 468
Q ss_pred cEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 98 PVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 98 PVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
|||..-.... ..+.+..|.++++..|-+.++|.+.+..++...
T Consensus 283 Pvv~s~~~~g---~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 283 PCISSDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred CEEEeCCCCC---hHHHccCCCceEEECCCCHHHHHHHHHHHHhCc
Confidence 9875321232 334577888999999999999999999887543
No 192
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=51.53 E-value=1.9e+02 Score=30.75 Aligned_cols=58 Identities=10% Similarity=0.168 Sum_probs=43.6
Q ss_pred HHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcE------EEeCCCChHHHHHHHHHHHHHh
Q 005719 86 KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACD------YLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 86 elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~D------YLlKPvs~eEL~~i~q~Vlrrk 143 (681)
+.+..++...++|||....-.+.+.+.+++..||+. ++.+|.-..++++-+...+.++
T Consensus 224 ~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~ 287 (300)
T TIGR01037 224 RMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAE 287 (300)
T ss_pred HHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHc
Confidence 566666666679999999999999999999999876 4667755566666666655544
No 193
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=50.88 E-value=1.5e+02 Score=34.03 Aligned_cols=101 Identities=11% Similarity=0.106 Sum_probs=56.0
Q ss_pred CCcEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeC--CCCC-CCHHHHHHHH-hcc
Q 005719 22 IGMRVLAVDDDPTC---LKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDV--HMPD-MDGFKLLEHV-GLE 94 (681)
Q Consensus 22 ~GmRVLIVDDD~~~---r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV--~MPd-mDG~elLe~I-~~~ 94 (681)
.|.+|++++-|+.- ...+..+.+..+..+..+....++.+.+.. ..+|+||+|. .++. .+-++-++.+ +..
T Consensus 251 ~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~--~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~ 328 (432)
T PRK12724 251 MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR--DGSELILIDTAGYSHRNLEQLERMQSFYSCF 328 (432)
T ss_pred cCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh--CCCCEEEEeCCCCCccCHHHHHHHHHHHHhh
Confidence 46789999988722 223444445556666666666677776653 4689999996 1221 1223333332 211
Q ss_pred ----CCCcEEEEEcCCChHHHHHHHh----cCCcEEEe
Q 005719 95 ----MDLPVIMLSAYGDTKLVMKGIT----HGACDYLL 124 (681)
Q Consensus 95 ----~dlPVImLSa~~d~e~v~kAl~----~GA~DYLl 124 (681)
+.-.++++++.........++. .|.+..|.
T Consensus 329 ~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIl 366 (432)
T PRK12724 329 GEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILL 366 (432)
T ss_pred cCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 2234677777766655544443 44455433
No 194
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=50.70 E-value=53 Score=31.74 Aligned_cols=53 Identities=21% Similarity=0.224 Sum_probs=44.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC----CHHHHHHHHHhcCCCceEEEEeCCCCC
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTN----QAVTALKMLRENRNNFDLVISDVHMPD 81 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as----~a~eALe~L~e~~~~pDLVLlDV~MPd 81 (681)
+|.+|+|+.......+.|..+|.+.|..|+.+. +..++ ++ ..|+|++-+--+.
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~---v~----~ADIVvsAtg~~~ 83 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSK---VH----DADVVVVGSPKPE 83 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHH---Hh----hCCEEEEecCCCC
Confidence 688999999999999999999999999999998 43333 32 3699999887764
No 195
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=50.16 E-value=2.1e+02 Score=32.15 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=53.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe-E-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH-HhccCCCcEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYE-V-TVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEH-VGLEMDLPVI 100 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~-V-t~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~-I~~~~dlPVI 100 (681)
-+|..+|-++...+.+++-++..+.. + ....++.+.+ .. ...||+|++|. | ....+++.. +.....--+|
T Consensus 82 ~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l---~~-~~~fD~V~lDP--~-Gs~~~~l~~al~~~~~~gil 154 (382)
T PRK04338 82 EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALL---HE-ERKFDVVDIDP--F-GSPAPFLDSAIRSVKRGGLL 154 (382)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH---hh-cCCCCEEEECC--C-CCcHHHHHHHHHHhcCCCEE
Confidence 37999999999999999888766543 2 2344444443 21 23599999996 4 445567666 5544456788
Q ss_pred EEEcCCChH
Q 005719 101 MLSAYGDTK 109 (681)
Q Consensus 101 mLSa~~d~e 109 (681)
.+|+.+-..
T Consensus 155 yvSAtD~~~ 163 (382)
T PRK04338 155 CVTATDTAP 163 (382)
T ss_pred EEEecCchh
Confidence 898776443
No 196
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.30 E-value=55 Score=34.94 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=38.5
Q ss_pred CceEEEEeCCCCCCCHH--HHHHHHhc-cCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 69 NFDLVISDVHMPDMDGF--KLLEHVGL-EMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 69 ~pDLVLlDV~MPdmDG~--elLe~I~~-~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
.+|+||+ -+.||. ..++.+.. ..++||+-+- .|-..||. .++.+++...+..+++.
T Consensus 35 ~~Dlvi~----iGGDGT~L~a~~~~~~~~~~iPilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 35 NPDIVIS----VGGDGTLLSAFHRYENQLDKVRFVGVH-------------TGHLGFYT-DWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCCEEEE----ECCcHHHHHHHHHhcccCCCCeEEEEe-------------CCCceecc-cCCHHHHHHHHHHHHcC
Confidence 4788887 478884 23333322 1578877553 47788998 68889999999888754
No 197
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=49.29 E-value=2.4 Score=42.81 Aligned_cols=121 Identities=21% Similarity=0.215 Sum_probs=80.8
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCe----EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 005719 18 DKFPIGMRVLAVDDDPTCLKVLENFLRACQYE----VTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL 93 (681)
Q Consensus 18 ~~fP~GmRVLIVDDD~~~r~iL~~~Le~~gy~----Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~ 93 (681)
..|+..++ +.+|++...+..+..++..+-+. ...+....+..... ....+|+++.++.||.+.+++.+..+..
T Consensus 11 ~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (340)
T KOG1601|consen 11 CRFDDLLN-LNADDSLLDISVDARLSASNSLAFPHEPTRLSSSPESFVAA--TSFSIDLSVPSLDMPGLEGFSLFVSENN 87 (340)
T ss_pred cCcccccc-cccccccCCcccccccccccccccccccccccchhhhhhcc--cccccccccccccccccccccccccccc
Confidence 44555555 88888888887777776654221 12222221101100 0135899999999999999999887743
Q ss_pred ---cCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 94 ---EMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 94 ---~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
..+.|++++............+..++.+|+.+|....++...+.++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 138 (340)
T KOG1601|consen 88 PNSLRHPPVPSMPSSNSSSSSSSSVSPSASLELTKPDRKNRLKRSRQHVRV 138 (340)
T ss_pred CCCCCCCCcccccccccchhhhcccCCcccccccccccCCCcccCCccccc
Confidence 345667677666666667778888899999999997777777776643
No 198
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=49.12 E-value=1.8e+02 Score=28.64 Aligned_cols=99 Identities=15% Similarity=0.071 Sum_probs=60.8
Q ss_pred CcEEEEEeCCH--HHHHHHHHHHHhCCCeEE----EECCHHHHHHHHHhcCCCceEEEEeCC-----CCCCCHHHHHHHH
Q 005719 23 GMRVLAVDDDP--TCLKVLENFLRACQYEVT----VTNQAVTALKMLRENRNNFDLVISDVH-----MPDMDGFKLLEHV 91 (681)
Q Consensus 23 GmRVLIVDDD~--~~r~iL~~~Le~~gy~Vt----~as~a~eALe~L~e~~~~pDLVLlDV~-----MPdmDG~elLe~I 91 (681)
|...+++.+.. .....+.+.+++.|..+. .+.+..++++.+. ...|.|.+..- .....+.+.++.+
T Consensus 77 Gad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~---~~~d~v~~~~~~~~~~~~~~~~~~~i~~~ 153 (202)
T cd04726 77 GADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK---LGVDIVILHRGIDAQAAGGWWPEDDLKKV 153 (202)
T ss_pred CCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH---CCCCEEEEcCcccccccCCCCCHHHHHHH
Confidence 44555554432 234445555666666554 3346677766443 24788877421 1123456777777
Q ss_pred hccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 92 GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 92 ~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
....++||++.-.- ..+.+.++++.||+.++.-
T Consensus 154 ~~~~~~~i~~~GGI-~~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 154 KKLLGVKVAVAGGI-TPDTLPEFKKAGADIVIVG 186 (202)
T ss_pred HhhcCCCEEEECCc-CHHHHHHHHhcCCCEEEEe
Confidence 54467888776655 4788999999999987654
No 199
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.06 E-value=1.5e+02 Score=32.17 Aligned_cols=100 Identities=21% Similarity=0.286 Sum_probs=59.2
Q ss_pred cEEEEEe--CCHH---HHHHHHHHHHhCCCeEEEECCHHHHHH-----H--HHhcCCCceEEEEeCCCCCCCHH--HHHH
Q 005719 24 MRVLAVD--DDPT---CLKVLENFLRACQYEVTVTNQAVTALK-----M--LRENRNNFDLVISDVHMPDMDGF--KLLE 89 (681)
Q Consensus 24 mRVLIVD--DD~~---~r~iL~~~Le~~gy~Vt~as~a~eALe-----~--L~e~~~~pDLVLlDV~MPdmDG~--elLe 89 (681)
.+|.||- +.+. ..+.+.++|++.++++.+.....+.+. . .......+|+||+ -+.||. .+++
T Consensus 5 ~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt~l~~~~ 80 (295)
T PRK01231 5 RNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIV----VGGDGSLLGAAR 80 (295)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEE----EeCcHHHHHHHH
Confidence 3588872 3333 344556667777888877554322211 0 0111224788877 477883 3333
Q ss_pred HHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 90 HVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 90 ~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
.+ ...++||+-+.. |-..|| -.++.+++...+..+++.
T Consensus 81 ~~-~~~~~Pvlgin~-------------G~lGFl-~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 81 AL-ARHNVPVLGINR-------------GRLGFL-TDIRPDELEFKLAEVLDG 118 (295)
T ss_pred Hh-cCCCCCEEEEeC-------------Cccccc-ccCCHHHHHHHHHHHHcC
Confidence 33 246789886643 555677 478899999999988754
No 200
>PRK14098 glycogen synthase; Provisional
Probab=48.97 E-value=1.5e+02 Score=34.08 Aligned_cols=112 Identities=8% Similarity=0.086 Sum_probs=60.5
Q ss_pred CcEEEEEeCC-HHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 005719 23 GMRVLAVDDD-PTCLKVLENFLRACQYEVTVTN--QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPV 99 (681)
Q Consensus 23 GmRVLIVDDD-~~~r~iL~~~Le~~gy~Vt~as--~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPV 99 (681)
+++++|+.+- ......|+++.++.+-.|.... +..++.+.+. ..|+.++-- ..+.-|+..++.+ ...+|+
T Consensus 336 ~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a----~aDi~l~PS-~~E~~Gl~~lEAm--a~G~pp 408 (489)
T PRK14098 336 DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIA----GLDMLLMPG-KIESCGMLQMFAM--SYGTIP 408 (489)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHH----hCCEEEeCC-CCCCchHHHHHHH--hCCCCe
Confidence 4566666543 2344556555555443444332 2222233332 257776532 2234455555554 345666
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
|+.....-.+.+......+...|+..|.+.++|...+.+++.
T Consensus 409 Vv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 409 VAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred EEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 654433333333233334678999999999999999888764
No 201
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=48.88 E-value=43 Score=34.93 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=42.4
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHh-cCCCceEEEEeCCC
Q 005719 20 FPIGMRVLAVDDDPTCLKVLENFLRACQY--EVTVTNQAVTALKMLRE-NRNNFDLVISDVHM 79 (681)
Q Consensus 20 fP~GmRVLIVDDD~~~r~iL~~~Le~~gy--~Vt~as~a~eALe~L~e-~~~~pDLVLlDV~M 79 (681)
.|+.-||.-||-++...+..++.+++.|+ .|+.... -+|++.+.. ....||+||+|..=
T Consensus 81 l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~~~~~fDliFIDadK 142 (219)
T COG4122 81 LPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRLLDGSFDLVFIDADK 142 (219)
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhccCCCccEEEEeCCh
Confidence 45344999999999999999999999875 3444331 345555543 34579999999853
No 202
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=48.79 E-value=2.2e+02 Score=30.06 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=59.7
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHHhCCCeEE-EEC--CHHHHHHHHHhcCCCceEEEEeCC-CCC------CCHHHHHHHH
Q 005719 23 GMRVLAVDDDP-TCLKVLENFLRACQYEVT-VTN--QAVTALKMLRENRNNFDLVISDVH-MPD------MDGFKLLEHV 91 (681)
Q Consensus 23 GmRVLIVDDD~-~~r~iL~~~Le~~gy~Vt-~as--~a~eALe~L~e~~~~pDLVLlDV~-MPd------mDG~elLe~I 91 (681)
|...+++-|.+ .....+...+++.|.... .+. +..+-++.+.+....|..++. +. -.+ .+-.+.++++
T Consensus 115 GvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs-~~G~TG~~~~~~~~~~~~i~~l 193 (256)
T TIGR00262 115 GVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVS-RAGVTGARNRAASALNELVKRL 193 (256)
T ss_pred CCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEE-CCCCCCCcccCChhHHHHHHHH
Confidence 44444444444 445556666677776543 332 223444444444444655544 21 111 1235666777
Q ss_pred hccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCC
Q 005719 92 GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126 (681)
Q Consensus 92 ~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKP 126 (681)
+...+.||++=..-...+.+.++.+.||+.+++--
T Consensus 194 r~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 194 KAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 66667887764444568899999999999998875
No 203
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=48.79 E-value=1e+02 Score=31.75 Aligned_cols=59 Identities=12% Similarity=0.246 Sum_probs=35.1
Q ss_pred eCCCCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHH
Q 005719 76 DVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNI 135 (681)
Q Consensus 76 DV~MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i 135 (681)
++.|-.-+.++.++.++....--+|=.-..-+.+.+.++++.|| +|++-|.-..++.+.
T Consensus 34 Eit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA-~FivSP~~~~~vi~~ 92 (201)
T PRK06015 34 EITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS-RFIVSPGTTQELLAA 92 (201)
T ss_pred EEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC-CEEECCCCCHHHHHH
Confidence 33344445666666664333222333444567889999999999 466667655555443
No 204
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=48.44 E-value=1.9e+02 Score=29.94 Aligned_cols=92 Identities=17% Similarity=0.226 Sum_probs=54.8
Q ss_pred HHHHHhCC-CeEEEECCHHHHHHHHHhcC-CCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhc
Q 005719 40 ENFLRACQ-YEVTVTNQAVTALKMLRENR-NNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITH 117 (681)
Q Consensus 40 ~~~Le~~g-y~Vt~as~a~eALe~L~e~~-~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~ 117 (681)
.+.|.+.+ ..|....+..++++.++.-. ..+++ +++.+-.-.+++.++.++....--+|-.-..-+.+.+..+++.
T Consensus 9 ~~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~--iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~a 86 (212)
T PRK05718 9 EEILRAGPVVPVIVINKLEDAVPLAKALVAGGLPV--LEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEA 86 (212)
T ss_pred HHHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCCE--EEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHc
Confidence 34444444 34555667777777665422 23554 4444555579999998864433233444444567889999999
Q ss_pred CCcEEEeCCCChHHHHH
Q 005719 118 GACDYLLKPVRIEELKN 134 (681)
Q Consensus 118 GA~DYLlKPvs~eEL~~ 134 (681)
||+ |++-|.-..++.+
T Consensus 87 GA~-FivsP~~~~~vi~ 102 (212)
T PRK05718 87 GAQ-FIVSPGLTPPLLK 102 (212)
T ss_pred CCC-EEECCCCCHHHHH
Confidence 995 5555644444443
No 205
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=48.11 E-value=24 Score=35.17 Aligned_cols=32 Identities=16% Similarity=0.260 Sum_probs=28.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECC
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQ 55 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~ 55 (681)
|||||||.....-..+.++|++.|+++.++..
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~ 33 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNV 33 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEEC
Confidence 79999998888888899999999988887763
No 206
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=47.78 E-value=1.8e+02 Score=33.13 Aligned_cols=56 Identities=13% Similarity=0.134 Sum_probs=38.1
Q ss_pred CCcEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcC--CCceEEEEeC
Q 005719 22 IGMRVLAVDDDPTC---LKVLENFLRACQYEVTVTNQAVTALKMLRENR--NNFDLVISDV 77 (681)
Q Consensus 22 ~GmRVLIVDDD~~~---r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~--~~pDLVLlDV 77 (681)
.|.+|.+|+-|+.- .+.++.+.+..+..+..+.+..+..+.+...+ ..+|+||+|.
T Consensus 233 ~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDT 293 (407)
T PRK12726 233 QNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDT 293 (407)
T ss_pred cCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 46789999888642 44566666667777777777766555544322 3589999998
No 207
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=47.68 E-value=83 Score=31.22 Aligned_cols=89 Identities=13% Similarity=0.142 Sum_probs=57.0
Q ss_pred HHHHHHhCCCeEEEE--CCHHHHHHHHHhcCCCceEEEEeCCCCC-----CCHHHHHHHH---hccCCCcEEEEEcCCCh
Q 005719 39 LENFLRACQYEVTVT--NQAVTALKMLRENRNNFDLVISDVHMPD-----MDGFKLLEHV---GLEMDLPVIMLSAYGDT 108 (681)
Q Consensus 39 L~~~Le~~gy~Vt~a--s~a~eALe~L~e~~~~pDLVLlDV~MPd-----mDG~elLe~I---~~~~dlPVImLSa~~d~ 108 (681)
+.+.|+..|+.+..- ......++.+..- .||.|-+|..+.. .....+++.+ ....+++|| ++.-++.
T Consensus 137 ~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~--~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vi-a~gVe~~ 213 (240)
T cd01948 137 TLRRLRALGVRIALDDFGTGYSSLSYLKRL--PVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVV-AEGVETE 213 (240)
T ss_pred HHHHHHHCCCeEEEeCCCCcHhhHHHHHhC--CCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEE-EEecCCH
Confidence 444466779988864 3455556666644 4899999975432 1234555554 233455555 6677888
Q ss_pred HHHHHHHhcCCcE----EEeCCCChH
Q 005719 109 KLVMKGITHGACD----YLLKPVRIE 130 (681)
Q Consensus 109 e~v~kAl~~GA~D----YLlKPvs~e 130 (681)
+....+...|++. |+-||...+
T Consensus 214 ~~~~~~~~~gi~~~QG~~~~~p~~~~ 239 (240)
T cd01948 214 EQLELLRELGCDYVQGYLFSRPLPAE 239 (240)
T ss_pred HHHHHHHHcCCCeeeeceeccCCCCC
Confidence 8888999999953 566776543
No 208
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=47.55 E-value=1.3e+02 Score=32.84 Aligned_cols=84 Identities=20% Similarity=0.247 Sum_probs=55.2
Q ss_pred HHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCC-----CC-CC-CHHHHHHHHhccCCCcEEEEEcCCChHH
Q 005719 39 LENFLRACQYEVT-VTNQAVTALKMLRENRNNFDLVISDVH-----MP-DM-DGFKLLEHVGLEMDLPVIMLSAYGDTKL 110 (681)
Q Consensus 39 L~~~Le~~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~-----MP-dm-DG~elLe~I~~~~dlPVImLSa~~d~e~ 110 (681)
+.+.++..|..|. .+.+..+|..+++. .+|.|++.=. .. .. .-+.++..+....++|||+--.-.+...
T Consensus 128 ~i~~l~~~gi~v~~~v~s~~~A~~a~~~---G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~ 204 (330)
T PF03060_consen 128 VIERLHAAGIKVIPQVTSVREARKAAKA---GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRG 204 (330)
T ss_dssp HHHHHHHTT-EEEEEESSHHHHHHHHHT---T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHH
T ss_pred HHHHHHHcCCccccccCCHHHHHHhhhc---CCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHH
Confidence 3345666676554 68899999887763 3899887632 11 22 2567777777777899999888889999
Q ss_pred HHHHHhcCCcEEEeC
Q 005719 111 VMKGITHGACDYLLK 125 (681)
Q Consensus 111 v~kAl~~GA~DYLlK 125 (681)
+..++..||+....-
T Consensus 205 iaaal~lGA~gV~~G 219 (330)
T PF03060_consen 205 IAAALALGADGVQMG 219 (330)
T ss_dssp HHHHHHCT-SEEEES
T ss_pred HHHHHHcCCCEeecC
Confidence 999999999998764
No 209
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=47.32 E-value=25 Score=35.00 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=48.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCC--CCCCH--HHHHHHHhccCCCcEEE
Q 005719 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHM--PDMDG--FKLLEHVGLEMDLPVIM 101 (681)
Q Consensus 26 VLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~M--PdmDG--~elLe~I~~~~dlPVIm 101 (681)
|||||....+-..|..+|++.|++|.++.+....++.+... .||.||+.--- |..++ ..+++.+ ...+||+-
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~--~~~~iilsgGP~~~~~~~~~~~~i~~~--~~~~PiLG 77 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQL--APSHLVISPGPCTPNEAGISLAVIRHF--ADKLPILG 77 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhc--CCCeEEEcCCCCChHhCCCchHHHHHh--cCCCCEEE
Confidence 89999999999999999999999999887543222333322 47777763211 11122 2344433 34789988
Q ss_pred EEc
Q 005719 102 LSA 104 (681)
Q Consensus 102 LSa 104 (681)
++-
T Consensus 78 IC~ 80 (191)
T PRK06774 78 VCL 80 (191)
T ss_pred ECH
Confidence 874
No 210
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=47.25 E-value=93 Score=32.22 Aligned_cols=58 Identities=26% Similarity=0.453 Sum_probs=43.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhc--CCCceEEEEeCC
Q 005719 21 PIGMRVLAVDDDPTCLKVLENFLRACQYE--VT-VTNQAVTALKMLREN--RNNFDLVISDVH 78 (681)
Q Consensus 21 P~GmRVLIVDDD~~~r~iL~~~Le~~gy~--Vt-~as~a~eALe~L~e~--~~~pDLVLlDV~ 78 (681)
|.+-+|.-+|-++...+..++.+++.|+. +. ...++.+.+..+... ...||+|++|..
T Consensus 91 ~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 91 PEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 44459999999999999999999988763 43 455777777666433 346999999974
No 211
>PLN02476 O-methyltransferase
Probab=47.20 E-value=1.6e+02 Score=31.74 Aligned_cols=59 Identities=20% Similarity=0.348 Sum_probs=44.3
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhc--CCCceEEEEeCC
Q 005719 20 FPIGMRVLAVDDDPTCLKVLENFLRACQYE--VT-VTNQAVTALKMLREN--RNNFDLVISDVH 78 (681)
Q Consensus 20 fP~GmRVLIVDDD~~~r~iL~~~Le~~gy~--Vt-~as~a~eALe~L~e~--~~~pDLVLlDV~ 78 (681)
.|++-+|.-+|-++...+..++.+++.|+. |. ...++.+.|..+..+ ...||+||+|..
T Consensus 140 l~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 140 LPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC
Confidence 354558999999999999999999998874 44 345677777655322 246999999985
No 212
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=46.98 E-value=45 Score=33.60 Aligned_cols=44 Identities=18% Similarity=0.238 Sum_probs=36.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVIS 75 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLl 75 (681)
|||+|||-.-.+...+.+.|++.|+++.+.....+ + ..+|.||+
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~----~----~~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEE----I----LDADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHH----H----ccCCEEEE
Confidence 69999999999999999999999999998875322 2 24898887
No 213
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=46.98 E-value=1.6e+02 Score=31.46 Aligned_cols=54 Identities=17% Similarity=0.362 Sum_probs=34.5
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHH---HHHHHhcCCCceEEEEeC
Q 005719 23 GMRVLAVDDDPT---CLKVLENFLRACQYEVTVTNQAVTA---LKMLRENRNNFDLVISDV 77 (681)
Q Consensus 23 GmRVLIVDDD~~---~r~iL~~~Le~~gy~Vt~as~a~eA---Le~L~e~~~~pDLVLlDV 77 (681)
+.+|.+|+-|.. ....++.+.+..++.+..+.+..+. ++.+.. ...+|+||+|.
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~-~~~~D~ViIDt 162 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE-EARVDYILIDT 162 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHh-cCCCCEEEEEC
Confidence 467888877654 4445556666678888776665443 333332 23589999997
No 214
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=46.55 E-value=1.9e+02 Score=31.99 Aligned_cols=102 Identities=9% Similarity=0.105 Sum_probs=60.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC--CCeEEE-ECCH-HHHHHHHHhcCCCceE-EEEeCCCCCCCHHHHHHHHhccCC
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRAC--QYEVTV-TNQA-VTALKMLRENRNNFDL-VISDVHMPDMDGFKLLEHVGLEMD 96 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~--gy~Vt~-as~a-~eALe~L~e~~~~pDL-VLlDV~MPdmDG~elLe~I~~~~d 96 (681)
..+||.||.- .. .......+... +++++. +... ..|-++.++ +.+ +..| --+++ ...+
T Consensus 2 ~~~rVgViG~-~~-G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~----~gi~~y~~-------~eell----~d~D 64 (343)
T TIGR01761 2 DVQSVVVCGT-RF-GQFYLAAFAAAPERFELAGILAQGSERSRALAHR----LGVPLYCE-------VEELP----DDID 64 (343)
T ss_pred CCcEEEEEeH-HH-HHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHH----hCCCccCC-------HHHHh----cCCC
Confidence 3489999997 43 44444445443 466664 3333 334333332 222 1111 11222 3456
Q ss_pred CcEEEEEc----CCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 005719 97 LPVIMLSA----YGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140 (681)
Q Consensus 97 lPVImLSa----~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vl 140 (681)
+-+|.+.. ..-.+.+.+|+++|..=++-||+..+|..++++.+-
T Consensus 65 i~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~ 112 (343)
T TIGR01761 65 IACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAE 112 (343)
T ss_pred EEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHH
Confidence 66666522 245788999999999999999999888877776654
No 215
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=46.44 E-value=30 Score=35.40 Aligned_cols=80 Identities=20% Similarity=0.228 Sum_probs=47.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeC--CCCCCCHH--HHHHHHhccCCCcE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDV--HMPDMDGF--KLLEHVGLEMDLPV 99 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV--~MPdmDG~--elLe~I~~~~dlPV 99 (681)
|||||+|........+...|.+.|+.+.++......+....+....+|.||+-= ..|..++. ++++.+ ...++||
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~-~~~~~Pi 79 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRAC-AAAGTPL 79 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHH-HhCCCCE
Confidence 689999998888888999999999988876543321111111112478777631 11222222 233333 2346998
Q ss_pred EEEEc
Q 005719 100 IMLSA 104 (681)
Q Consensus 100 ImLSa 104 (681)
+-++-
T Consensus 80 LGIC~ 84 (214)
T PRK07765 80 LGVCL 84 (214)
T ss_pred EEEcc
Confidence 88874
No 216
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=46.10 E-value=1.8e+02 Score=30.68 Aligned_cols=59 Identities=17% Similarity=0.312 Sum_probs=44.5
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhc---CCCceEEEEeCC
Q 005719 20 FPIGMRVLAVDDDPTCLKVLENFLRACQY--EVT-VTNQAVTALKMLREN---RNNFDLVISDVH 78 (681)
Q Consensus 20 fP~GmRVLIVDDD~~~r~iL~~~Le~~gy--~Vt-~as~a~eALe~L~e~---~~~pDLVLlDV~ 78 (681)
.|++-+|.-+|-++...+.-+..+++.|+ .|. ...++.+.|..+... ...||+|++|..
T Consensus 101 l~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 101 LPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 35566999999999999999999998874 344 355677777665432 247999999986
No 217
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=45.77 E-value=1.3e+02 Score=29.68 Aligned_cols=76 Identities=16% Similarity=0.272 Sum_probs=49.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC--CCeEEEECC-------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRAC--QYEVTVTNQ-------AVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL 93 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~--gy~Vt~as~-------a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~ 93 (681)
+.||.++-..+...+.+.+.|++. +..++-+.+ ..+.++.+.+ ..+|+|++-+-+|...- ++..+..
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~--~~pdiv~vglG~PkQE~--~~~~~~~ 121 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINA--SGADILFVGLGAPKQEL--WIARHKD 121 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHH--cCCCEEEEECCCCHHHH--HHHHHHH
Confidence 689999999999999998888775 344443221 2223555654 35999999999997653 3444433
Q ss_pred cCCCcEEEE
Q 005719 94 EMDLPVIML 102 (681)
Q Consensus 94 ~~dlPVImL 102 (681)
..+.+|++-
T Consensus 122 ~l~~~v~~~ 130 (171)
T cd06533 122 RLPVPVAIG 130 (171)
T ss_pred HCCCCEEEE
Confidence 345555543
No 218
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.69 E-value=1.6e+02 Score=30.31 Aligned_cols=93 Identities=17% Similarity=0.098 Sum_probs=54.2
Q ss_pred HHHHhCC-CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCC-Cc--EEEEEcCCChHHHHHHHh
Q 005719 41 NFLRACQ-YEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMD-LP--VIMLSAYGDTKLVMKGIT 116 (681)
Q Consensus 41 ~~Le~~g-y~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~d-lP--VImLSa~~d~e~v~kAl~ 116 (681)
+.|.+.+ ..|....+..+++..++.-. .--+=++++.|-.-+.++.++.++.... -| +|=...--+.+.+.++++
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al~-~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~ 86 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAVI-KGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAIL 86 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHH-HCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHH
Confidence 3444433 23444555666655543211 1124455666666668888888854432 23 333444567889999999
Q ss_pred cCCcEEEeCCCChHHHHHH
Q 005719 117 HGACDYLLKPVRIEELKNI 135 (681)
Q Consensus 117 ~GA~DYLlKPvs~eEL~~i 135 (681)
.|| +|++-|.-..++.+.
T Consensus 87 aGA-~FivsP~~~~~v~~~ 104 (213)
T PRK06552 87 AGA-QFIVSPSFNRETAKI 104 (213)
T ss_pred cCC-CEEECCCCCHHHHHH
Confidence 999 566677666665544
No 219
>PRK04302 triosephosphate isomerase; Provisional
Probab=45.53 E-value=3.5e+02 Score=27.68 Aligned_cols=98 Identities=14% Similarity=0.061 Sum_probs=55.7
Q ss_pred HHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCC--CC---C-----CCH-HHHHHHHhc-cCCCcEEEEEcCC
Q 005719 39 LENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVH--MP---D-----MDG-FKLLEHVGL-EMDLPVIMLSAYG 106 (681)
Q Consensus 39 L~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~--MP---d-----mDG-~elLe~I~~-~~dlPVImLSa~~ 106 (681)
+.....+.|..+..+....+-++.+.+ ..+|+|-+.-. +. . ..+ .++++.++. ..++|||.-..-.
T Consensus 106 ~v~~a~~~Gl~~I~~v~~~~~~~~~~~--~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~ 183 (223)
T PRK04302 106 VVERAKKLGLESVVCVNNPETSAAAAA--LGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGIS 183 (223)
T ss_pred HHHHHHHCCCeEEEEcCCHHHHHHHhc--CCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCC
Confidence 333344568776655544333333432 24677765321 10 1 112 234455554 3468999888888
Q ss_pred ChHHHHHHHhcCCcEEEeCC--CChHHHHHHHHH
Q 005719 107 DTKLVMKGITHGACDYLLKP--VRIEELKNIWQH 138 (681)
Q Consensus 107 d~e~v~kAl~~GA~DYLlKP--vs~eEL~~i~q~ 138 (681)
..+.+.+++..||+.+++-- ++.+.+..+++.
T Consensus 184 ~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~ 217 (223)
T PRK04302 184 TGEDVKAALELGADGVLLASGVVKAKDPEAALRD 217 (223)
T ss_pred CHHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHH
Confidence 89999999999999987654 223444444443
No 220
>PRK14974 cell division protein FtsY; Provisional
Probab=45.40 E-value=2.9e+02 Score=30.64 Aligned_cols=104 Identities=18% Similarity=0.239 Sum_probs=52.9
Q ss_pred CCcEEEEEeCCH---HHHHHHHHHHHhCCCeEEEECCH-------HHHHHHHHhcCCCceEEEEeCC--CCC-CCHHHHH
Q 005719 22 IGMRVLAVDDDP---TCLKVLENFLRACQYEVTVTNQA-------VTALKMLRENRNNFDLVISDVH--MPD-MDGFKLL 88 (681)
Q Consensus 22 ~GmRVLIVDDD~---~~r~iL~~~Le~~gy~Vt~as~a-------~eALe~L~e~~~~pDLVLlDV~--MPd-mDG~elL 88 (681)
.|.+|++++.|. ...+.++.+....|..+.....+ .++++.+.. ..+|+||+|.. ++. .+-++-|
T Consensus 167 ~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~--~~~DvVLIDTaGr~~~~~~lm~eL 244 (336)
T PRK14974 167 NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKA--RGIDVVLIDTAGRMHTDANLMDEL 244 (336)
T ss_pred cCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHh--CCCCEEEEECCCccCCcHHHHHHH
Confidence 467898888773 34455666666667665543321 234444433 35899999984 221 1112223
Q ss_pred HHH-h-ccCCCcEEEEEcCCChHHHH--HHH--hcCCcEEEeCCC
Q 005719 89 EHV-G-LEMDLPVIMLSAYGDTKLVM--KGI--THGACDYLLKPV 127 (681)
Q Consensus 89 e~I-~-~~~dlPVImLSa~~d~e~v~--kAl--~~GA~DYLlKPv 127 (681)
+.+ + ..++.-++++.+....+... +.+ ..+.+.+++==+
T Consensus 245 ~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKl 289 (336)
T PRK14974 245 KKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKV 289 (336)
T ss_pred HHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeee
Confidence 333 2 23455566665544333332 222 246666554333
No 221
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=45.31 E-value=2e+02 Score=30.90 Aligned_cols=85 Identities=14% Similarity=0.083 Sum_probs=53.3
Q ss_pred HHHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCC-----CCCCHHHHHHHHhcc--CCCcEEEEEcCCCh
Q 005719 38 VLENFLRACQYEVTV--TNQAVTALKMLRENRNNFDLVISDVHM-----PDMDGFKLLEHVGLE--MDLPVIMLSAYGDT 108 (681)
Q Consensus 38 iL~~~Le~~gy~Vt~--as~a~eALe~L~e~~~~pDLVLlDV~M-----PdmDG~elLe~I~~~--~dlPVImLSa~~d~ 108 (681)
.++++-+..+..|.+ +.+..+|..+.. ...|.|.+.-+- .+...++++..+... .++|||.-..-.+.
T Consensus 163 ~i~~l~~~~~~pvivK~v~s~~~a~~a~~---~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 239 (299)
T cd02809 163 DLAWLRSQWKGPLILKGILTPEDALRAVD---AGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRG 239 (299)
T ss_pred HHHHHHHhcCCCEEEeecCCHHHHHHHHH---CCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCH
Confidence 344443333433332 345556555443 347877775432 123456677766432 25999999999999
Q ss_pred HHHHHHHhcCCcEEEeC
Q 005719 109 KLVMKGITHGACDYLLK 125 (681)
Q Consensus 109 e~v~kAl~~GA~DYLlK 125 (681)
..+.+++..||+...+-
T Consensus 240 ~d~~kal~lGAd~V~ig 256 (299)
T cd02809 240 TDVLKALALGADAVLIG 256 (299)
T ss_pred HHHHHHHHcCCCEEEEc
Confidence 99999999999987554
No 222
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=45.10 E-value=2.9e+02 Score=29.40 Aligned_cols=59 Identities=14% Similarity=0.261 Sum_probs=42.5
Q ss_pred HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEE------EeCCCChHHHHHHHHHHHHHh
Q 005719 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDY------LLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 85 ~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DY------LlKPvs~eEL~~i~q~Vlrrk 143 (681)
++.++.++...++|||....-.+.+.+.+.+..||+.. +..|.-...+++-+.+.+.++
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~~ 287 (301)
T PRK07259 223 LRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDKY 287 (301)
T ss_pred HHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHHc
Confidence 56777776666899999999999999999999998653 335655555555555555443
No 223
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=45.09 E-value=48 Score=31.86 Aligned_cols=43 Identities=14% Similarity=0.289 Sum_probs=25.2
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcC
Q 005719 57 VTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAY 105 (681)
Q Consensus 57 ~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~ 105 (681)
.++++.++. ..||+||+|. ++... ..+..+ ...+..||+++..
T Consensus 81 ~~~~~~~~~--~~~D~iiIDt--aG~~~-~~~~~~-~~Ad~~ivv~tpe 123 (148)
T cd03114 81 PEVIRVLDA--AGFDVIIVET--VGVGQ-SEVDIA-SMADTTVVVMAPG 123 (148)
T ss_pred HHHHHHHHh--cCCCEEEEEC--CccCh-hhhhHH-HhCCEEEEEECCC
Confidence 455665553 3699999998 55432 222222 2345667777665
No 224
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=44.99 E-value=1.1e+02 Score=36.42 Aligned_cols=96 Identities=16% Similarity=0.211 Sum_probs=53.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCC-------------------C-CC
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMP-------------------D-MD 83 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MP-------------------d-mD 83 (681)
.+|+|+.-.+.-+ .+.+.|.+.++++++.+.-.+.++.+++. .+.++.-|..-+ + .+
T Consensus 401 ~~vII~G~Gr~G~-~va~~L~~~g~~vvvID~d~~~v~~~~~~--g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~ 477 (601)
T PRK03659 401 PQVIIVGFGRFGQ-VIGRLLMANKMRITVLERDISAVNLMRKY--GYKVYYGDATQLELLRAAGAEKAEAIVITCNEPED 477 (601)
T ss_pred CCEEEecCchHHH-HHHHHHHhCCCCEEEEECCHHHHHHHHhC--CCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHH
Confidence 4677777666544 34455556677777666555555555432 233444443221 1 11
Q ss_pred HHHHHHHHh-ccCCCcEEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 84 GFKLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 84 G~elLe~I~-~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
-..++..++ ..++++||+-+. +.+...+..+.||+..+.
T Consensus 478 n~~i~~~~r~~~p~~~IiaRa~--~~~~~~~L~~~Ga~~vv~ 517 (601)
T PRK03659 478 TMKIVELCQQHFPHLHILARAR--GRVEAHELLQAGVTQFSR 517 (601)
T ss_pred HHHHHHHHHHHCCCCeEEEEeC--CHHHHHHHHhCCCCEEEc
Confidence 233444443 346777776654 456677778899987764
No 225
>PRK04457 spermidine synthase; Provisional
Probab=44.76 E-value=2.2e+02 Score=30.08 Aligned_cols=55 Identities=20% Similarity=0.327 Sum_probs=38.6
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhC--CCeEEE-ECCHHHHHHHHHhcCCCceEEEEeCC
Q 005719 20 FPIGMRVLAVDDDPTCLKVLENFLRAC--QYEVTV-TNQAVTALKMLRENRNNFDLVISDVH 78 (681)
Q Consensus 20 fP~GmRVLIVDDD~~~r~iL~~~Le~~--gy~Vt~-as~a~eALe~L~e~~~~pDLVLlDV~ 78 (681)
+| +.+|.+||=|+.+.+..++.+... +.++.+ ..++.+.+.. ....||+|++|..
T Consensus 88 ~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~---~~~~yD~I~~D~~ 145 (262)
T PRK04457 88 LP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV---HRHSTDVILVDGF 145 (262)
T ss_pred CC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh---CCCCCCEEEEeCC
Confidence 44 579999999999999998887532 234543 4566665543 3346999999973
No 226
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=44.61 E-value=1.4e+02 Score=29.40 Aligned_cols=69 Identities=14% Similarity=0.217 Sum_probs=47.0
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCC--------CCHHHHHHHHhc-cCCCcEEEEEcCCChHHHHHHHhcCCcEE
Q 005719 52 VTNQAVTALKMLRENRNNFDLVISDVHMPD--------MDGFKLLEHVGL-EMDLPVIMLSAYGDTKLVMKGITHGACDY 122 (681)
Q Consensus 52 ~as~a~eALe~L~e~~~~pDLVLlDV~MPd--------mDG~elLe~I~~-~~dlPVImLSa~~d~e~v~kAl~~GA~DY 122 (681)
.+.+..++.+... ..+|+|.++.-.+. ..|++.++.+.. .+++||+++.+- +.+.+.+++..|++.+
T Consensus 102 s~h~~~e~~~a~~---~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~gv 177 (196)
T TIGR00693 102 STHNLEELAEAEA---EGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADGV 177 (196)
T ss_pred eCCCHHHHHHHhH---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEE
Confidence 4556666655443 35899987665442 237888888753 346898888665 5678888889999887
Q ss_pred Ee
Q 005719 123 LL 124 (681)
Q Consensus 123 Ll 124 (681)
..
T Consensus 178 a~ 179 (196)
T TIGR00693 178 AV 179 (196)
T ss_pred EE
Confidence 54
No 227
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=44.54 E-value=4.8e+02 Score=28.96 Aligned_cols=107 Identities=15% Similarity=0.212 Sum_probs=62.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEC--CHHHHHHHHHhcCCCceEEEEeCCC-C--CCC--HHHHHHHHhcc
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQY--EVTVTN--QAVTALKMLRENRNNFDLVISDVHM-P--DMD--GFKLLEHVGLE 94 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy--~Vt~as--~a~eALe~L~e~~~~pDLVLlDV~M-P--dmD--G~elLe~I~~~ 94 (681)
+++.||.+-+. +..+++++++.+. .|+... +..+..+.+.. .|+.++-... + +.+ +..++|.+.
T Consensus 254 ~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~----aDv~v~pS~~~~~g~~Eg~p~~llEAma-- 326 (406)
T PRK15427 254 FRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDD----ADVFLLPSVTGADGDMEGIPVALMEAMA-- 326 (406)
T ss_pred EEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHh----CCEEEECCccCCCCCccCccHHHHHHHh--
Confidence 45566655443 3455555555442 244333 22344444432 5776653321 1 123 355666653
Q ss_pred CCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 95 MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 95 ~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
..+|||.- .... +.+.+..|..+++..|-+.++|.+.+..++.
T Consensus 327 ~G~PVI~t-~~~g---~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 327 VGIPVVST-LHSG---IPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred CCCCEEEe-CCCC---chhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 46898864 3322 3445778999999999999999999988875
No 228
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=44.52 E-value=1.6e+02 Score=32.50 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=42.9
Q ss_pred CcEEEEEeCCHHHH-----HHHHHHHHhCCCeEEEECC---------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHH
Q 005719 23 GMRVLAVDDDPTCL-----KVLENFLRACQYEVTVTNQ---------AVTALKMLRENRNNFDLVISDVHMPDMDGFKLL 88 (681)
Q Consensus 23 GmRVLIVDDD~~~r-----~iL~~~Le~~gy~Vt~as~---------a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elL 88 (681)
+-|+|||-|..... +.+.+.|+..|+++.++.. ..++++.+++. .+|+||- .-+.+-+++.
T Consensus 23 ~~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGSviD~A 97 (375)
T cd08179 23 GKKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREF--EPDWIIA---LGGGSPIDAA 97 (375)
T ss_pred CCeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhc--CCCEEEE---eCCccHHHHH
Confidence 35899998876544 5677888877877776643 45666666654 4888875 4566666666
Q ss_pred HHH
Q 005719 89 EHV 91 (681)
Q Consensus 89 e~I 91 (681)
|.+
T Consensus 98 K~i 100 (375)
T cd08179 98 KAM 100 (375)
T ss_pred HHH
Confidence 654
No 229
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=43.88 E-value=3.9e+02 Score=28.07 Aligned_cols=65 Identities=18% Similarity=0.258 Sum_probs=36.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcC----CChHHHHHHHhcCCcEEEeCCC--ChHHHHHHHHHHHH
Q 005719 70 FDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAY----GDTKLVMKGITHGACDYLLKPV--RIEELKNIWQHVIR 141 (681)
Q Consensus 70 pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~----~d~e~v~kAl~~GA~DYLlKPv--s~eEL~~i~q~Vlr 141 (681)
.|++++.- + +..+++.+ ...+|||++... .......+.+..+-..++..+- +.++|.+.+..++.
T Consensus 253 ad~~v~~s---g--~~t~~Eam--~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~ 323 (350)
T cd03785 253 ADLVISRA---G--ASTVAELA--ALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLS 323 (350)
T ss_pred cCEEEECC---C--HhHHHHHH--HhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhc
Confidence 46666521 1 34445554 357898876432 1222222333333457777764 89999998888764
No 230
>PRK04148 hypothetical protein; Provisional
Probab=43.71 E-value=1e+02 Score=29.76 Aligned_cols=60 Identities=12% Similarity=0.278 Sum_probs=45.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFK 86 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~e 86 (681)
++|||.|.-= ....+...|.+.|++|+.+..-.++++.+++. ..+++..|+.-|++.-++
T Consensus 17 ~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~--~~~~v~dDlf~p~~~~y~ 76 (134)
T PRK04148 17 NKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL--GLNAFVDDLFNPNLEIYK 76 (134)
T ss_pred CCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--CCeEEECcCCCCCHHHHh
Confidence 5789998766 33335566777899999999888888877754 378999999888865443
No 231
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=43.64 E-value=2.7e+02 Score=30.26 Aligned_cols=65 Identities=18% Similarity=0.159 Sum_probs=44.9
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 70 FDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 70 pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
.|+.++ ...++.-|+.++|.+. ..+|||.- ... ...+.+..|..+++..|.+.++|.+.+..++.
T Consensus 301 adv~v~-~s~~e~~~~~llEAmA--~G~PVIas-~~~---g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~ 365 (396)
T cd03818 301 SDVHVY-LTYPFVLSWSLLEAMA--CGCLVVGS-DTA---PVREVITDGENGLLVDFFDPDALAAAVIELLD 365 (396)
T ss_pred CcEEEE-cCcccccchHHHHHHH--CCCCEEEc-CCC---CchhhcccCCceEEcCCCCHHHHHHHHHHHHh
Confidence 466554 2345555667777663 56888863 322 23445677889999999999999999988875
No 232
>PRK00811 spermidine synthase; Provisional
Probab=43.41 E-value=2e+02 Score=30.72 Aligned_cols=60 Identities=25% Similarity=0.383 Sum_probs=41.2
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhC------CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC
Q 005719 19 KFPIGMRVLAVDDDPTCLKVLENFLRAC------QYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPD 81 (681)
Q Consensus 19 ~fP~GmRVLIVDDD~~~r~iL~~~Le~~------gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPd 81 (681)
+.|..-+|.+||=|+.+.+..++.+... .-+|. +..++.+.++ .....||+||+|..-|.
T Consensus 96 ~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~---~~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 96 KHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA---ETENSFDVIIVDSTDPV 162 (283)
T ss_pred cCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh---hCCCcccEEEECCCCCC
Confidence 3444568999999999999999988642 22343 3455555443 33456999999986554
No 233
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=43.36 E-value=1.6e+02 Score=32.63 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=41.3
Q ss_pred CcEEEEEeCCHHH-----HHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHH
Q 005719 23 GMRVLAVDDDPTC-----LKVLENFLRACQYEVTVTN---------QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLL 88 (681)
Q Consensus 23 GmRVLIVDDD~~~-----r~iL~~~Le~~gy~Vt~as---------~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elL 88 (681)
+-|+|||-|.... .+.+.+.|+..|+++.++. ...++++.+++. .+|+||- .-+..-+++.
T Consensus 28 ~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---iGGGS~iD~a 102 (382)
T cd08187 28 GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEE--KVDFILA---VGGGSVIDSA 102 (382)
T ss_pred CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHc--CCCEEEE---eCChHHHHHH
Confidence 4699999776443 3567778887777776654 234566666654 4898874 3455555655
Q ss_pred HHH
Q 005719 89 EHV 91 (681)
Q Consensus 89 e~I 91 (681)
|.+
T Consensus 103 K~i 105 (382)
T cd08187 103 KAI 105 (382)
T ss_pred HHH
Confidence 554
No 234
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=43.33 E-value=3.6e+02 Score=29.13 Aligned_cols=107 Identities=14% Similarity=0.185 Sum_probs=65.4
Q ss_pred cEEEEEeC---CH-HHHHHHHHHHHhCCC--eEEEECC--HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC
Q 005719 24 MRVLAVDD---DP-TCLKVLENFLRACQY--EVTVTNQ--AVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEM 95 (681)
Q Consensus 24 mRVLIVDD---D~-~~r~iL~~~Le~~gy--~Vt~as~--a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~ 95 (681)
++++||.+ +. .....++++.+..+. .|..... ..+..+.+. ..|+.++-. ..+.-|..+++.+. .
T Consensus 253 ~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~----~ad~~v~ps-~~E~~g~~~lEAma--~ 325 (405)
T TIGR03449 253 LRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYR----AADVVAVPS-YNESFGLVAMEAQA--C 325 (405)
T ss_pred eEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHH----hCCEEEECC-CCCCcChHHHHHHH--c
Confidence 56667753 11 334556666665543 3554432 234444443 257776643 33445677777764 4
Q ss_pred CCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 96 DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 96 dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
.+|||+..... ..+.+..|...++..|-+.++|.+.+..++.
T Consensus 326 G~Pvi~~~~~~----~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 326 GTPVVAARVGG----LPVAVADGETGLLVDGHDPADWADALARLLD 367 (405)
T ss_pred CCCEEEecCCC----cHhhhccCCceEECCCCCHHHHHHHHHHHHh
Confidence 68998654322 2234677888999999999999999988875
No 235
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=42.96 E-value=2.1e+02 Score=34.07 Aligned_cols=97 Identities=16% Similarity=0.151 Sum_probs=66.7
Q ss_pred HHHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCCC-----CCHHHHHHHH---hccCCCcEEEEEcCCC
Q 005719 38 VLENFLRACQYEVTV--TNQAVTALKMLRENRNNFDLVISDVHMPD-----MDGFKLLEHV---GLEMDLPVIMLSAYGD 107 (681)
Q Consensus 38 iL~~~Le~~gy~Vt~--as~a~eALe~L~e~~~~pDLVLlDV~MPd-----mDG~elLe~I---~~~~dlPVImLSa~~d 107 (681)
.....|+..|+.+.. +..+...+..|..- .+|.|-+|..+-. .....+++.+ ....++.|| ....++
T Consensus 682 ~~l~~l~~~G~~i~ld~fg~~~~~~~~l~~l--~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vi-a~gVe~ 758 (799)
T PRK11359 682 KRIQILRDMGVGLSVDDFGTGFSGLSRLVSL--PVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVV-AEGVET 758 (799)
T ss_pred HHHHHHHHCCCEEEEECCCCchhhHHHHhhC--CCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEE-EEcCCC
Confidence 344457778998876 45666777777654 4999999975421 1233455554 234566655 556778
Q ss_pred hHHHHHHHhcCCcE----EEeCCCChHHHHHHHH
Q 005719 108 TKLVMKGITHGACD----YLLKPVRIEELKNIWQ 137 (681)
Q Consensus 108 ~e~v~kAl~~GA~D----YLlKPvs~eEL~~i~q 137 (681)
.+....+.+.|++. |+.||...++|...++
T Consensus 759 ~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~ 792 (799)
T PRK11359 759 KEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMS 792 (799)
T ss_pred HHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHH
Confidence 88888888999974 6889999999987543
No 236
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=41.97 E-value=1.8e+02 Score=31.43 Aligned_cols=99 Identities=18% Similarity=0.321 Sum_probs=59.3
Q ss_pred EEEEE--eCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHH-------HHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 005719 25 RVLAV--DDDPTC---LKVLENFLRACQYEVTVTNQAVTALKM-------LRENRNNFDLVISDVHMPDMDGFKLLEHVG 92 (681)
Q Consensus 25 RVLIV--DDD~~~---r~iL~~~Le~~gy~Vt~as~a~eALe~-------L~e~~~~pDLVLlDV~MPdmDG~elLe~I~ 92 (681)
+|+|| .+.+.. ...+.++|++.++++.+.......+.. .......+|+||+ -+.||. +++.++
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt-~l~~~~ 81 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVV----LGGDGT-MLGIGR 81 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEE----ECCcHH-HHHHHH
Confidence 47777 233333 345556667778887775543222110 1111234788887 477884 333332
Q ss_pred --ccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 93 --LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 93 --~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
...++||+-+. .|-..||. .+..+++...+.++++.
T Consensus 82 ~~~~~~~pilGIn-------------~G~lGFL~-~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 82 QLAPYGVPLIGIN-------------HGRLGFIT-DIPLDDMQETLPPMLAG 119 (291)
T ss_pred HhcCCCCCEEEEc-------------CCCccccc-cCCHHHHHHHHHHHHcC
Confidence 23578887554 45567887 78889999999988754
No 237
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=41.64 E-value=2.2e+02 Score=29.87 Aligned_cols=99 Identities=13% Similarity=0.145 Sum_probs=65.5
Q ss_pred HHHHHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHH---hccCCCcEEEEEcC
Q 005719 36 LKVLENFLRACQYEVTV--TNQAVTALKMLRENRNNFDLVISDVHMP-----DMDGFKLLEHV---GLEMDLPVIMLSAY 105 (681)
Q Consensus 36 r~iL~~~Le~~gy~Vt~--as~a~eALe~L~e~~~~pDLVLlDV~MP-----dmDG~elLe~I---~~~~dlPVImLSa~ 105 (681)
...+-..|+..|+.+.. +.++-..+..|.. -.||+|=+|-.+- ......+++.| ....++.||+= ..
T Consensus 138 ~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~--l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaE-GV 214 (256)
T COG2200 138 ALALLRQLRELGVRIALDDFGTGYSSLSYLKR--LPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAE-GV 214 (256)
T ss_pred HHHHHHHHHHCCCeEEEECCCCCHHHHHHHhh--CCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEe-ec
Confidence 34445556777877664 6678888888875 4599999997553 22334556655 33455666643 44
Q ss_pred CChHHHHHHHhcCCc----EEEeCCCChHHHHHHHH
Q 005719 106 GDTKLVMKGITHGAC----DYLLKPVRIEELKNIWQ 137 (681)
Q Consensus 106 ~d~e~v~kAl~~GA~----DYLlKPvs~eEL~~i~q 137 (681)
+..+......+.|++ +|+.||...+++...+.
T Consensus 215 Et~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~~ 250 (256)
T COG2200 215 ETEEQLDLLRELGCDYLQGYLFSRPLPADALDALLS 250 (256)
T ss_pred CCHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHHh
Confidence 566677777788887 36889999877766554
No 238
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=41.14 E-value=2.1e+02 Score=31.00 Aligned_cols=91 Identities=16% Similarity=0.096 Sum_probs=58.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CCCeE---EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--cC
Q 005719 25 RVLAVDDDPTCLKVLENFLRA----CQYEV---TVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL--EM 95 (681)
Q Consensus 25 RVLIVDDD~~~r~iL~~~Le~----~gy~V---t~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~--~~ 95 (681)
-|||=|.+-...-.+++.+++ .+|.+ +.+.+..++.+++.. .+|+|++|= | +--++.+.+.. ..
T Consensus 160 avliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~a---gaDiImLDN-m---~~e~~~~av~~l~~~ 232 (280)
T COG0157 160 AVLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEA---GADIIMLDN-M---SPEELKEAVKLLGLA 232 (280)
T ss_pred eEEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHc---CCCEEEecC-C---CHHHHHHHHHHhccC
Confidence 367767666666557666654 35532 357789999998874 489999994 3 33333333322 23
Q ss_pred CCcEEEEEcCCChHHHHHHHhcCCcEE
Q 005719 96 DLPVIMLSAYGDTKLVMKGITHGACDY 122 (681)
Q Consensus 96 dlPVImLSa~~d~e~v~kAl~~GA~DY 122 (681)
.-.++-.|+.-..+.+......|++.+
T Consensus 233 ~~~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 233 GRALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred CceEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 344666777778888888888888654
No 239
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=41.04 E-value=2.5e+02 Score=30.99 Aligned_cols=98 Identities=9% Similarity=0.107 Sum_probs=60.6
Q ss_pred EEEEEeC----CHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCC-----------CCC--H
Q 005719 25 RVLAVDD----DPTCLKVLENFLRACQYEVTV---TNQAVTALKMLRENRNNFDLVISDVHMP-----------DMD--G 84 (681)
Q Consensus 25 RVLIVDD----D~~~r~iL~~~Le~~gy~Vt~---as~a~eALe~L~e~~~~pDLVLlDV~MP-----------dmD--G 84 (681)
.++++|- .....+.++.+-+.+.....+ +.+...|..+++ ...|.|.+-+.-- +.- +
T Consensus 110 d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~---aGad~I~V~~G~G~~~~tr~~~g~g~~~~~ 186 (321)
T TIGR01306 110 EYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELEN---AGADATKVGIGPGKVCITKIKTGFGTGGWQ 186 (321)
T ss_pred CEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHH---cCcCEEEECCCCCccccceeeeccCCCchH
Confidence 6677765 234444454444444322222 235666666664 2467776543211 111 3
Q ss_pred HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 85 ~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
+..+..+....++|||.-..-.....+.+|+.+||+....-
T Consensus 187 l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 187 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGASMVMIG 227 (321)
T ss_pred HHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHcCCCEEeec
Confidence 44566665556799999999999999999999999998765
No 240
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=41.03 E-value=1.2e+02 Score=36.12 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=28.2
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEEEEEcCCChHHHHHHHhcCCcEEE
Q 005719 70 FDLVISDVHMPDMDGFKLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYL 123 (681)
Q Consensus 70 pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVImLSa~~d~e~v~kAl~~GA~DYL 123 (681)
.++|++-+.-++ .-..++..++ ..++++||+-+. +.+...+..+.||+..+
T Consensus 465 A~~vvv~~~d~~-~n~~i~~~ar~~~p~~~iiaRa~--d~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 465 AEVLINAIDDPQ-TSLQLVELVKEHFPHLQIIARAR--DVDHYIRLRQAGVEKPE 516 (621)
T ss_pred CCEEEEEeCCHH-HHHHHHHHHHHhCCCCeEEEEEC--CHHHHHHHHHCCCCEEe
Confidence 455555442221 1233344443 356788777654 45666777788998653
No 241
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=41.03 E-value=1.2e+02 Score=30.05 Aligned_cols=90 Identities=13% Similarity=0.193 Sum_probs=56.9
Q ss_pred HHHHHHHhCCCeEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCC---CC--HHHHHHHH---hccCCCcEEEEEcCCC
Q 005719 38 VLENFLRACQYEVTVTN--QAVTALKMLRENRNNFDLVISDVHMPD---MD--GFKLLEHV---GLEMDLPVIMLSAYGD 107 (681)
Q Consensus 38 iL~~~Le~~gy~Vt~as--~a~eALe~L~e~~~~pDLVLlDV~MPd---mD--G~elLe~I---~~~~dlPVImLSa~~d 107 (681)
.....|++.|+.+..-. .+...+..+..- .||.|-+|..+-. .+ ...+++.+ ....++.|| ...-++
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~~l--~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vi-a~gVe~ 213 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLKRL--PVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVV-AEGVET 213 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHHhC--CCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEE-EecCCC
Confidence 34455677898887643 445556666543 4999999975432 11 33455544 234455555 566778
Q ss_pred hHHHHHHHhcCCcE----EEeCCCChH
Q 005719 108 TKLVMKGITHGACD----YLLKPVRIE 130 (681)
Q Consensus 108 ~e~v~kAl~~GA~D----YLlKPvs~e 130 (681)
.+....+...|++. |+.||...+
T Consensus 214 ~~~~~~l~~~Gi~~~QG~~~~~p~~~~ 240 (241)
T smart00052 214 PEQLDLLRSLGCDYGQGYLFSRPLPLD 240 (241)
T ss_pred HHHHHHHHHcCCCEEeeceeccCCCCC
Confidence 88888888999863 577886543
No 242
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=40.94 E-value=1.4e+02 Score=32.43 Aligned_cols=79 Identities=22% Similarity=0.295 Sum_probs=53.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-----------
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTN-------QAVTALKMLRENRNNFDLVISDVHMPDMDGF----------- 85 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as-------~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~----------- 85 (681)
|||||+...-.....|.+.|. .+++|.... +.....+.+++. .||+||--.-+..-|.-
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~~~--~PDvVIn~AAyt~vD~aE~~~e~A~~vN 77 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIRET--RPDVVINAAAYTAVDKAESEPELAFAVN 77 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccCccccccChHHHHHHHHhh--CCCEEEECccccccccccCCHHHHHHhH
Confidence 679999999999999999997 567777553 444566667654 49999966655443322
Q ss_pred ----HHHHHHhccCCCcEEEEEcC
Q 005719 86 ----KLLEHVGLEMDLPVIMLSAY 105 (681)
Q Consensus 86 ----elLe~I~~~~dlPVImLSa~ 105 (681)
..+.++..+...++|.+|.+
T Consensus 78 a~~~~~lA~aa~~~ga~lVhiSTD 101 (281)
T COG1091 78 ATGAENLARAAAEVGARLVHISTD 101 (281)
T ss_pred HHHHHHHHHHHHHhCCeEEEeecc
Confidence 12223334567889988854
No 243
>PLN02591 tryptophan synthase
Probab=40.10 E-value=4.2e+02 Score=28.11 Aligned_cols=101 Identities=14% Similarity=0.084 Sum_probs=63.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEEC--CH-HHHHHHHHhcCCCceEEEEeCCCCC------CCHHHHHHHHhccCC
Q 005719 26 VLAVDDDPTCLKVLENFLRACQYEVTVTN--QA-VTALKMLRENRNNFDLVISDVHMPD------MDGFKLLEHVGLEMD 96 (681)
Q Consensus 26 VLIVDDD~~~r~iL~~~Le~~gy~Vt~as--~a-~eALe~L~e~~~~pDLVLlDV~MPd------mDG~elLe~I~~~~d 96 (681)
|+|.|-.......+...+++.|.....+- +. .+-++.+.+....|=-++.-.--.+ .+-.+++++++...+
T Consensus 110 viipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~ 189 (250)
T PLN02591 110 LVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTD 189 (250)
T ss_pred EEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCC
Confidence 67777777777778888888886655432 22 3334555444333322221111111 112345777777778
Q ss_pred CcEEEEEcCCChHHHHHHHhcCCcEEEeCC
Q 005719 97 LPVIMLSAYGDTKLVMKGITHGACDYLLKP 126 (681)
Q Consensus 97 lPVImLSa~~d~e~v~kAl~~GA~DYLlKP 126 (681)
+||++=.+-.+.+.+.+....||+..++-.
T Consensus 190 ~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 190 KPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred CceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 999986666778999999999999998876
No 244
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=40.09 E-value=87 Score=22.86 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=32.1
Q ss_pred cccchhhHHHHHHHHHHhcCCCCChhhHHhhcCCCCCcHHHHHHh
Q 005719 215 VVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASH 259 (681)
Q Consensus 215 ~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~v~glt~~~v~Sh 259 (681)
-.||++=...|+.++.+.|. .-=+.|.+.|+ +-|...|+.+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~--~~w~~Ia~~~~--~rt~~~~~~~ 42 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGK--NNWEKIAKELP--GRTAEQCRER 42 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCc--CCHHHHHHHcC--CCCHHHHHHH
Confidence 46999999999999999994 22466777765 7888888874
No 245
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=39.99 E-value=2.8e+02 Score=29.57 Aligned_cols=55 Identities=22% Similarity=0.347 Sum_probs=33.0
Q ss_pred CCcEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECC---H-H---HHHHHHHhcCCCceEEEEeCC
Q 005719 22 IGMRVLAVDDDPT---CLKVLENFLRACQYEVTVTNQ---A-V---TALKMLRENRNNFDLVISDVH 78 (681)
Q Consensus 22 ~GmRVLIVDDD~~---~r~iL~~~Le~~gy~Vt~as~---a-~---eALe~L~e~~~~pDLVLlDV~ 78 (681)
.|.+|+||+-|.. ..+.++.+.+..+..+..... . . ++++.+. ...+|+||+|.-
T Consensus 99 ~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~--~~~~D~ViIDT~ 163 (272)
T TIGR00064 99 QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAK--ARNIDVVLIDTA 163 (272)
T ss_pred cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHH--HCCCCEEEEeCC
Confidence 4679999998852 234566666776755543322 2 2 2333332 245999999973
No 246
>PLN02823 spermine synthase
Probab=39.98 E-value=68 Score=35.43 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=39.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC-----CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC
Q 005719 21 PIGMRVLAVDDDPTCLKVLENFLRAC-----QYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMP 80 (681)
Q Consensus 21 P~GmRVLIVDDD~~~r~iL~~~Le~~-----gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MP 80 (681)
+...+|.+||=|+.+.+..++.+... +-++. +..++...+ +.....||+||+|+.-|
T Consensus 125 ~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L---~~~~~~yDvIi~D~~dp 187 (336)
T PLN02823 125 KTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL---EKRDEKFDVIIGDLADP 187 (336)
T ss_pred CCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH---hhCCCCccEEEecCCCc
Confidence 34468999999999999999988532 23444 344555544 44445799999997554
No 247
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=39.48 E-value=3.5e+02 Score=27.51 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=54.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEEC-------CHHHHHHHHHhcCCCceEEEEeCC-CC-CCCHHHHHHHHhccCC
Q 005719 26 VLAVDDDPTCLKVLENFLRACQYEVTVTN-------QAVTALKMLRENRNNFDLVISDVH-MP-DMDGFKLLEHVGLEMD 96 (681)
Q Consensus 26 VLIVDDD~~~r~iL~~~Le~~gy~Vt~as-------~a~eALe~L~e~~~~pDLVLlDV~-MP-dmDG~elLe~I~~~~d 96 (681)
|||-|-|...++.++..-+..|-++...+ ++.+.++++......|=+|+.|=. .. ...|-++++.+...++
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h~~ 82 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVANHPD 82 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHcCCC
Confidence 56667788888888888888898888665 678899998876666666666643 22 2467788888877777
Q ss_pred CcEE
Q 005719 97 LPVI 100 (681)
Q Consensus 97 lPVI 100 (681)
+-|+
T Consensus 83 IeVL 86 (180)
T PF14097_consen 83 IEVL 86 (180)
T ss_pred ceEE
Confidence 6543
No 248
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=39.10 E-value=1.6e+02 Score=32.20 Aligned_cols=59 Identities=15% Similarity=0.101 Sum_probs=44.2
Q ss_pred CHHHHHHHHhccCCCcEE--EEEcCCChHHHHHHHhcCCcEEEe-----CCCChHHHHHHHHHHHH
Q 005719 83 DGFKLLEHVGLEMDLPVI--MLSAYGDTKLVMKGITHGACDYLL-----KPVRIEELKNIWQHVIR 141 (681)
Q Consensus 83 DG~elLe~I~~~~dlPVI--mLSa~~d~e~v~kAl~~GA~DYLl-----KPvs~eEL~~i~q~Vlr 141 (681)
-++++++.+.....+||| ....-..++.+..+++.||+.+++ |.-++.+....+...+.
T Consensus 190 ~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~ 255 (293)
T PRK04180 190 APYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATT 255 (293)
T ss_pred CCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence 478888888666679998 666667899999999999999854 34466666665655554
No 249
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=39.05 E-value=4.1e+02 Score=26.59 Aligned_cols=65 Identities=22% Similarity=0.296 Sum_probs=42.4
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 70 FDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 70 pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
.|++|+-... +.-|..+++.+. ..+|||+..... ..+.+..+-..++..+.+.+++.+.+..++.
T Consensus 276 ~di~i~~~~~-~~~~~~~~Ea~~--~g~pvI~~~~~~----~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 340 (374)
T cd03801 276 ADVFVLPSLY-EGFGLVLLEAMA--AGLPVVASDVGG----IPEVVEDGETGLLVPPGDPEALAEAILRLLD 340 (374)
T ss_pred cCEEEecchh-ccccchHHHHHH--cCCcEEEeCCCC----hhHHhcCCcceEEeCCCCHHHHHHHHHHHHc
Confidence 4666654333 344566666653 468887544322 2334555778899999999999999988764
No 250
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=38.99 E-value=1.1e+02 Score=30.11 Aligned_cols=83 Identities=20% Similarity=0.210 Sum_probs=47.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCe---------------EEEECCHHHHHHHHHh--cCCCceEEEEeCCCCCCCH
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYE---------------VTVTNQAVTALKMLRE--NRNNFDLVISDVHMPDMDG 84 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~---------------Vt~as~a~eALe~L~e--~~~~pDLVLlDV~MPdmDG 84 (681)
+++||||+.--..+.+.+.+.|+...+. |++...+ .....+.. ....||+||+|=-- -.|-
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~a-t~~~~~~~p~~~~~yd~II~DEcH-~~Dp 109 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHA-TYGHFLLNPCRLKNYDVIIMDECH-FTDP 109 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHH-HHHHHHHTSSCTTS-SEEEECTTT---SH
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccH-HHHHHhcCcccccCccEEEEeccc-cCCH
Confidence 5789999999999999999999865322 2222222 23343332 22479999999522 2333
Q ss_pred HH-----HHHHHhccCCCcEEEEEcCC
Q 005719 85 FK-----LLEHVGLEMDLPVIMLSAYG 106 (681)
Q Consensus 85 ~e-----lLe~I~~~~dlPVImLSa~~ 106 (681)
-. +++.+.......+|+||+..
T Consensus 110 ~sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 110 TSIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp HHHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred HHHhhheeHHHhhhccCeeEEEEeCCC
Confidence 22 33333334456899999864
No 251
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=38.93 E-value=2.8e+02 Score=24.57 Aligned_cols=92 Identities=18% Similarity=0.126 Sum_probs=51.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH--HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQA--VTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPV 99 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a--~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPV 99 (681)
+.+|.+||.++...+.+ ...++.+.. .++ .+.|+.+.- ...+.|++...-. ..-+.++..++. .+..+|
T Consensus 21 ~~~vvvid~d~~~~~~~----~~~~~~~i~-gd~~~~~~l~~a~i--~~a~~vv~~~~~d-~~n~~~~~~~r~~~~~~~i 92 (116)
T PF02254_consen 21 GIDVVVIDRDPERVEEL----REEGVEVIY-GDATDPEVLERAGI--EKADAVVILTDDD-EENLLIALLARELNPDIRI 92 (116)
T ss_dssp TSEEEEEESSHHHHHHH----HHTTSEEEE-S-TTSHHHHHHTTG--GCESEEEEESSSH-HHHHHHHHHHHHHTTTSEE
T ss_pred CCEEEEEECCcHHHHHH----Hhccccccc-ccchhhhHHhhcCc--cccCEEEEccCCH-HHHHHHHHHHHHHCCCCeE
Confidence 35899999998764333 334666554 333 334444432 3478888866421 223444445543 556777
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
|+.... .+........||+..+.
T Consensus 93 i~~~~~--~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 93 IARVND--PENAELLRQAGADHVIS 115 (116)
T ss_dssp EEEESS--HHHHHHHHHTT-SEEEE
T ss_pred EEEECC--HHHHHHHHHCCcCEEEC
Confidence 766654 44555566788877653
No 252
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=38.86 E-value=35 Score=34.04 Aligned_cols=89 Identities=15% Similarity=0.169 Sum_probs=54.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCC--CCCCH--HHHHHHHhccCCCcEEE
Q 005719 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHM--PDMDG--FKLLEHVGLEMDLPVIM 101 (681)
Q Consensus 26 VLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~M--PdmDG--~elLe~I~~~~dlPVIm 101 (681)
|||||....+-..|..+|++.|+++.++......++.+.. ..||.||+---= |..++ .++++.+ ...+||+-
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iils~GPg~p~~~~~~~~~~~~~--~~~~PiLG 77 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDA--LKPQKIVISPGPCTPDEAGISLDVIRHY--AGRLPILG 77 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCEEEEcCCCCChHHCCccHHHHHHh--cCCCCEEE
Confidence 8999999999999999999999988887654322333332 247887774321 22222 2333332 35689887
Q ss_pred EEcCCChHHHHHHHhcCCcEE
Q 005719 102 LSAYGDTKLVMKGITHGACDY 122 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA~DY 122 (681)
++- ....-+...|+.=+
T Consensus 78 ICl----G~Q~la~a~Gg~v~ 94 (187)
T PRK08007 78 VCL----GHQAMAQAFGGKVV 94 (187)
T ss_pred ECH----HHHHHHHHcCCEEE
Confidence 763 33444555666433
No 253
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.79 E-value=2.8e+02 Score=29.90 Aligned_cols=91 Identities=13% Similarity=0.131 Sum_probs=55.4
Q ss_pred EEEEeCCHHHHHHHHHHHH----hCCC--e-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH-Hhc--c-
Q 005719 26 VLAVDDDPTCLKVLENFLR----ACQY--E-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEH-VGL--E- 94 (681)
Q Consensus 26 VLIVDDD~~~r~iL~~~Le----~~gy--~-Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~-I~~--~- 94 (681)
|||-|.+-.....+...++ ++.+ . .+.+.+..+|++.+.. .+|+|.+|= |+ ++.++. ++. .
T Consensus 155 vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~---GaDiI~LDn----~~-~e~l~~~v~~~~~~ 226 (273)
T PRK05848 155 LMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNA---GADIVMCDN----MS-VEEIKEVVAYRNAN 226 (273)
T ss_pred hCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc---CCCEEEECC----CC-HHHHHHHHHHhhcc
Confidence 6666665444444444443 3342 2 2357789999998863 489999874 22 333332 221 1
Q ss_pred CCCcEEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 95 MDLPVIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 95 ~dlPVImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
..-..|..++.-+.+.+.+..+.|++.+.+
T Consensus 227 ~~~~~ieAsGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 227 YPHVLLEASGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred CCCeEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 112356667777889999999999987643
No 254
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=38.54 E-value=1.3e+02 Score=33.55 Aligned_cols=58 Identities=16% Similarity=0.048 Sum_probs=42.1
Q ss_pred CCceEEEEeCCCCCCC-HHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 68 NNFDLVISDVHMPDMD-GFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 68 ~~pDLVLlDV~MPdmD-G~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
..+|+|++|+.--... -++.+++|+....-+.|+-..-...+.+..++++||+...+-
T Consensus 120 ~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 120 PQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 3589999999665443 356788887654445555555778889999999999987644
No 255
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=38.44 E-value=1.6e+02 Score=32.56 Aligned_cols=64 Identities=19% Similarity=0.326 Sum_probs=41.6
Q ss_pred CcEEEEEeCCHH-----HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHH
Q 005719 23 GMRVLAVDDDPT-----CLKVLENFLRACQYEVTVTN---------QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLL 88 (681)
Q Consensus 23 GmRVLIVDDD~~-----~r~iL~~~Le~~gy~Vt~as---------~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elL 88 (681)
|-|||||-|... ..+.+.+.|++.+.++.++. +..++.+.+++. .+|+||- .-+..-+++.
T Consensus 25 g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~Iia---vGGGS~iD~a 99 (380)
T cd08185 25 GKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREE--GCDFVVG---LGGGSSMDTA 99 (380)
T ss_pred CCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHc--CCCEEEE---eCCccHHHHH
Confidence 358999988654 33567777877777766553 344566666654 4898884 3455666666
Q ss_pred HHH
Q 005719 89 EHV 91 (681)
Q Consensus 89 e~I 91 (681)
|.+
T Consensus 100 K~i 102 (380)
T cd08185 100 KAI 102 (380)
T ss_pred HHH
Confidence 655
No 256
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=38.43 E-value=1.3e+02 Score=30.32 Aligned_cols=57 Identities=23% Similarity=0.267 Sum_probs=40.7
Q ss_pred CHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEe--CCCChHHHHHHHHHH
Q 005719 83 DGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLL--KPVRIEELKNIWQHV 139 (681)
Q Consensus 83 DG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLl--KPvs~eEL~~i~q~V 139 (681)
..++.++.++...++||++...-.+...+..+++.||+..++ .-+..++++..++..
T Consensus 59 g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 59 GSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred CCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 456778888666789999876556666888999999999873 223346666666655
No 257
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=38.40 E-value=3.7e+02 Score=30.38 Aligned_cols=92 Identities=17% Similarity=0.151 Sum_probs=54.7
Q ss_pred CCcEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCC--CCCCCHHH---HHHHHhc
Q 005719 22 IGMRVLAVDDDPT---CLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVH--MPDMDGFK---LLEHVGL 93 (681)
Q Consensus 22 ~GmRVLIVDDD~~---~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~--MPdmDG~e---lLe~I~~ 93 (681)
.|.+|.+|.-|.. ....|+.+.+..|..+..+....+..+.+... ..+|+||+|.- ++ .+... +.+.+..
T Consensus 205 ~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~-~~~DlVLIDTaGr~~-~~~~~l~el~~~l~~ 282 (388)
T PRK12723 205 KSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS-KDFDLVLVDTIGKSP-KDFMKLAEMKELLNA 282 (388)
T ss_pred CCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-CCCCEEEEcCCCCCc-cCHHHHHHHHHHHHh
Confidence 4678999988763 22335555555678888777776666655544 46999999983 22 23332 2222322
Q ss_pred -cCC-CcEEEEEcCCChHHHHHHH
Q 005719 94 -EMD-LPVIMLSAYGDTKLVMKGI 115 (681)
Q Consensus 94 -~~d-lPVImLSa~~d~e~v~kAl 115 (681)
.++ -.++++++......+.+.+
T Consensus 283 ~~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 283 CGRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred cCCCCeEEEEEcCCCCHHHHHHHH
Confidence 223 3567777776655554443
No 258
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.28 E-value=3.2e+02 Score=28.58 Aligned_cols=84 Identities=12% Similarity=0.122 Sum_probs=42.5
Q ss_pred eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc--CCCc--EEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 49 EVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE--MDLP--VIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 49 ~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~--~dlP--VImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
.|....+..+|++.++.-. .--+=++++.|-.-+.++.++.+... ...| +|=...--+.+.+..+++.||. |++
T Consensus 19 ~Vvr~~~~~~a~~~~~al~-~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~-FiV 96 (222)
T PRK07114 19 PVFYHADVEVAKKVIKACY-DGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGAN-FIV 96 (222)
T ss_pred EEEEcCCHHHHHHHHHHHH-HCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCC-EEE
Confidence 3344445555555443210 01122444555444566666665321 1123 3333444577888888899884 555
Q ss_pred CCCChHHHHH
Q 005719 125 KPVRIEELKN 134 (681)
Q Consensus 125 KPvs~eEL~~ 134 (681)
-|.-..++.+
T Consensus 97 sP~~~~~v~~ 106 (222)
T PRK07114 97 TPLFNPDIAK 106 (222)
T ss_pred CCCCCHHHHH
Confidence 6655555444
No 259
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=38.21 E-value=2.6e+02 Score=30.43 Aligned_cols=99 Identities=21% Similarity=0.261 Sum_probs=59.6
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCeEE-----EECCHHHHHHHHHhcCCCceEEEEeCCC---C------CCCHH
Q 005719 20 FPIGMRVLAVDDDPTCLKVLENFLRACQYEVT-----VTNQAVTALKMLRENRNNFDLVISDVHM---P------DMDGF 85 (681)
Q Consensus 20 fP~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt-----~as~a~eALe~L~e~~~~pDLVLlDV~M---P------dmDG~ 85 (681)
|..-=|||=+|.|+.+++..-+.-++.+..+. .-.-...-.++|.+. .|||+++-=|- . +++.+
T Consensus 101 f~~PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~--~PDIlViTGHD~~~K~~~d~~dl~~Y 178 (283)
T TIGR02855 101 FGMPGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEV--RPDILVITGHDAYSKNKGNYMDLNAY 178 (283)
T ss_pred CCCCCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHh--CCCEEEEeCchhhhcCCCChhhhhhh
Confidence 53223899999999999998888888765544 333445566667654 49988874332 1 11111
Q ss_pred ----HHHHHH---h-ccCCCcEEEEEcCCChHHHHHHHhcCCc
Q 005719 86 ----KLLEHV---G-LEMDLPVIMLSAYGDTKLVMKGITHGAC 120 (681)
Q Consensus 86 ----elLe~I---~-~~~dlPVImLSa~~d~e~v~kAl~~GA~ 120 (681)
-|++.+ + -.++.-=+++-|-......+..+++||.
T Consensus 179 rnSkyFVeaVk~aR~y~~~~D~LVIFAGACQS~yEall~AGAN 221 (283)
T TIGR02855 179 RHSKYFVETVREARKYVPSLDQLVIFAGACQSHFESLIRAGAN 221 (283)
T ss_pred hhhHHHHHHHHHHHhcCCCcccEEEEcchhHHHHHHHHHcCcc
Confidence 234444 2 2234433333344566777788899995
No 260
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.03 E-value=2.5e+02 Score=29.73 Aligned_cols=92 Identities=16% Similarity=0.215 Sum_probs=57.3
Q ss_pred cEEEEEeCC--HHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005719 24 MRVLAVDDD--PTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIM 101 (681)
Q Consensus 24 mRVLIVDDD--~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVIm 101 (681)
|++.|+..+ ......+.+.|.+.|..+....+.. ......|+||+ -+.||. +|+.++.. ++||+-
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~d~vi~----iGGDGT-~L~a~~~~-~~Pilg 67 (256)
T PRK14075 1 MKLGIFYREEKEKEAKFLKEKISKEHEVVEFCEASA-------SGKVTADLIIV----VGGDGT-VLKAAKKV-GTPLVG 67 (256)
T ss_pred CEEEEEeCccHHHHHHHHHHHHHHcCCeeEeecccc-------cccCCCCEEEE----ECCcHH-HHHHHHHc-CCCEEE
Confidence 455555333 3344556666766777776654422 12235788887 477884 34444433 889886
Q ss_pred EEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 102 LSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
+. .|-..||. .+..+++.+.+..+++.
T Consensus 68 in-------------~G~lGfl~-~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 68 FK-------------AGRLGFLS-SYTLEEIDRFLEDLKNW 94 (256)
T ss_pred Ee-------------CCCCcccc-ccCHHHHHHHHHHHHcC
Confidence 65 34456776 68889998888887654
No 261
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=37.80 E-value=82 Score=32.31 Aligned_cols=68 Identities=10% Similarity=0.090 Sum_probs=48.5
Q ss_pred CCeEEEECCHHHHHHHHHhcCCCceEEEEeCCC---CCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcE
Q 005719 47 QYEVTVTNQAVTALKMLRENRNNFDLVISDVHM---PDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACD 121 (681)
Q Consensus 47 gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~M---PdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~D 121 (681)
++.|.+..+..++.+++.. ..|+|-+|... | ..--++++.|+... +++|..-...+....|.++|++-
T Consensus 45 ~~~V~ITPT~~ev~~l~~a---GadIIAlDaT~R~Rp-~~l~~li~~i~~~~---~l~MADist~ee~~~A~~~G~D~ 115 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAEA---GADIIALDATDRPRP-ETLEELIREIKEKY---QLVMADISTLEEAINAAELGFDI 115 (192)
T ss_dssp TSS--BS-SHHHHHHHHHC---T-SEEEEE-SSSS-S-S-HHHHHHHHHHCT---SEEEEE-SSHHHHHHHHHTT-SE
T ss_pred CCCeEECCCHHHHHHHHHc---CCCEEEEecCCCCCC-cCHHHHHHHHHHhC---cEEeeecCCHHHHHHHHHcCCCE
Confidence 5678888888898888863 48999999976 4 66777888887655 77888889999999999999754
No 262
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=37.69 E-value=4.9e+02 Score=28.11 Aligned_cols=105 Identities=18% Similarity=0.226 Sum_probs=52.3
Q ss_pred CcEEEEE-eCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005719 23 GMRVLAV-DDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIM 101 (681)
Q Consensus 23 GmRVLIV-DDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVIm 101 (681)
.++++++ .++...+..+++..+..+-.|....-..+..+.+. ..|++++. + -|..++|.+. ..+|||+
T Consensus 230 ~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~----~aD~~v~~---~--gg~t~~EA~a--~g~PvI~ 298 (380)
T PRK13609 230 DLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFR----VTSCMITK---P--GGITLSEAAA--LGVPVIL 298 (380)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHH----hccEEEeC---C--CchHHHHHHH--hCCCEEE
Confidence 3555544 44444555555555443323444443333223332 24676652 2 2555566553 4688876
Q ss_pred EEcCC--ChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 102 LSAYG--DTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 102 LSa~~--d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
..... ..+......+.|+ ...+.+.++|.+.+..++.
T Consensus 299 ~~~~~g~~~~n~~~~~~~G~---~~~~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 299 YKPVPGQEKENAMYFERKGA---AVVIRDDEEVFAKTEALLQ 337 (380)
T ss_pred CCCCCCcchHHHHHHHhCCc---EEEECCHHHHHHHHHHHHC
Confidence 53222 1112222234554 2234677888888887764
No 263
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=37.68 E-value=5.5e+02 Score=30.76 Aligned_cols=102 Identities=15% Similarity=0.115 Sum_probs=58.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQY--EVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIM 101 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy--~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVIm 101 (681)
++++||.|.+ .+..++.+.+..+. .|.......+..+.+. ..|+.++-- .-+.-|..+++.+. ..+|||.
T Consensus 430 irLvIVGdG~-~~eeLk~la~elgL~d~V~FlG~~~Dv~~~La----aADVfVlPS-~~EGfp~vlLEAMA--~GlPVVA 501 (578)
T PRK15490 430 TRFVLVGDGD-LRAEAQKRAEQLGILERILFVGASRDVGYWLQ----KMNVFILFS-RYEGLPNVLIEAQM--VGVPVIS 501 (578)
T ss_pred eEEEEEeCch-hHHHHHHHHHHcCCCCcEEECCChhhHHHHHH----hCCEEEEcc-cccCccHHHHHHHH--hCCCEEE
Confidence 5666666544 23455555555443 3444444333333332 257766632 23455677777763 5689985
Q ss_pred EEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHH
Q 005719 102 LSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQ 137 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q 137 (681)
.-... ..+.+..|.++|+.+|.+.+.+.+.+.
T Consensus 502 TdvGG----~~EiV~dG~nG~LVp~~D~~aLa~ai~ 533 (578)
T PRK15490 502 TPAGG----SAECFIEGVSGFILDDAQTVNLDQACR 533 (578)
T ss_pred eCCCC----cHHHcccCCcEEEECCCChhhHHHHHH
Confidence 43322 234567899999999988877766553
No 264
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=37.61 E-value=3.2e+02 Score=31.36 Aligned_cols=106 Identities=17% Similarity=0.115 Sum_probs=64.1
Q ss_pred CCCcEEEEE----eCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCC----HHHHH---H
Q 005719 21 PIGMRVLAV----DDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD----GFKLL---E 89 (681)
Q Consensus 21 P~GmRVLIV----DDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmD----G~elL---e 89 (681)
|..++|.|+ --+..-.+.+...|.+.||.++. .....|+|++..--.-.. -...+ +
T Consensus 21 ~~~~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~-------------~~~~ADiviiNTC~v~~~a~~k~~~~i~~~~ 87 (467)
T PRK14329 21 KNTKKLFIESYGCQMNFADSEIVASILQMAGYNTTE-------------NLEEADLVLVNTCSIRDNAEQKVRKRLEKFN 87 (467)
T ss_pred CCCCEEEEEecCCCCcHHHHHHHHHHHHHCcCEECC-------------CcccCCEEEEeCcceechHHHHHHHHHHHHH
Confidence 334467776 35666778888999888998764 123479999987554322 22333 3
Q ss_pred HHh-ccCCCcEEEEEcCCChHHHHHHHhc-CCcEEEeCCCChHHHHHHHHHHH
Q 005719 90 HVG-LEMDLPVIMLSAYGDTKLVMKGITH-GACDYLLKPVRIEELKNIWQHVI 140 (681)
Q Consensus 90 ~I~-~~~dlPVImLSa~~d~e~v~kAl~~-GA~DYLlKPvs~eEL~~i~q~Vl 140 (681)
.++ ..++.+|| +++..-...-.+.++. +..||++.+-..+.|..++.++.
T Consensus 88 ~~k~~~p~~~iv-vgGc~a~~~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~~ 139 (467)
T PRK14329 88 ALKKKNPKLIVG-VLGCMAERLKDKLLEEEKIVDLVVGPDAYLDLPNLIAEVE 139 (467)
T ss_pred HHHhhCCCcEEE-EECChhcCcHHHHHhcCCCceEEECCCCHHHHHHHHHHHh
Confidence 332 23455455 4443222222333444 44799999999999988887754
No 265
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=37.56 E-value=2.4e+02 Score=28.83 Aligned_cols=82 Identities=11% Similarity=0.022 Sum_probs=47.6
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc-EEEEEcCCChHHHHHHHhcCCcEEEeCCCChH
Q 005719 52 VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLP-VIMLSAYGDTKLVMKGITHGACDYLLKPVRIE 130 (681)
Q Consensus 52 ~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlP-VImLSa~~d~e~v~kAl~~GA~DYLlKPvs~e 130 (681)
...+..++++.++.-- .--+=++.+.+-.-++++.++.+......+ +|=....-+.+.+..+++.|| +|+.-|....
T Consensus 17 r~~~~~~~~~~~~a~~-~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA-~fivsp~~~~ 94 (206)
T PRK09140 17 RGITPDEALAHVGALI-EAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGG-RLIVTPNTDP 94 (206)
T ss_pred eCCCHHHHHHHHHHHH-HCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCC-CEEECCCCCH
Confidence 3344555554443210 012335555666667888888886544434 333334456788899999999 5666676666
Q ss_pred HHHHH
Q 005719 131 ELKNI 135 (681)
Q Consensus 131 EL~~i 135 (681)
++.+.
T Consensus 95 ~v~~~ 99 (206)
T PRK09140 95 EVIRR 99 (206)
T ss_pred HHHHH
Confidence 65544
No 266
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=37.38 E-value=3.1e+02 Score=28.65 Aligned_cols=52 Identities=25% Similarity=0.372 Sum_probs=39.1
Q ss_pred HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcC-CcEEEe------CCCChHHHHHHH
Q 005719 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHG-ACDYLL------KPVRIEELKNIW 136 (681)
Q Consensus 85 ~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~G-A~DYLl------KPvs~eEL~~i~ 136 (681)
+++++.+....++|||+.....+.+.+.+++..| |+..+. +-++.++++..+
T Consensus 188 ~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~ 246 (254)
T TIGR00735 188 LELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYL 246 (254)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHH
Confidence 5778888766789999999999999999999988 777443 345555554444
No 267
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=37.25 E-value=1e+02 Score=34.87 Aligned_cols=66 Identities=33% Similarity=0.458 Sum_probs=48.5
Q ss_pred CCCCCCCcEEEEEeCCHHHHHHHH--HHHHhC------CCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH
Q 005719 17 IDKFPIGMRVLAVDDDPTCLKVLE--NFLRAC------QYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG 84 (681)
Q Consensus 17 ~~~fP~GmRVLIVDDD~~~r~iL~--~~Le~~------gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG 84 (681)
.-++|.-..|-+||=||...+.-+ ..|++. +-+|+++. ++|...++.....||.||+|+--|....
T Consensus 307 llkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~--dDAf~wlr~a~~~fD~vIVDl~DP~tps 380 (508)
T COG4262 307 LLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVN--DDAFQWLRTAADMFDVVIVDLPDPSTPS 380 (508)
T ss_pred HHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEe--ccHHHHHHhhcccccEEEEeCCCCCCcc
Confidence 457888889999999999988887 556553 23666554 3566666665668999999997776543
No 268
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.23 E-value=2.9e+02 Score=30.18 Aligned_cols=101 Identities=22% Similarity=0.312 Sum_probs=60.5
Q ss_pred cEEEEEe--CCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHH----------------HHhcCCCceEEEEeCCCCCC
Q 005719 24 MRVLAVD--DDPT---CLKVLENFLRACQYEVTVTNQAVTALKM----------------LRENRNNFDLVISDVHMPDM 82 (681)
Q Consensus 24 mRVLIVD--DD~~---~r~iL~~~Le~~gy~Vt~as~a~eALe~----------------L~e~~~~pDLVLlDV~MPdm 82 (681)
.+|+||- +.+. ....|..+|++.|++|.+.......+.. .......+|+||+ -+.
T Consensus 6 ~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGG 81 (306)
T PRK03372 6 RRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV----LGG 81 (306)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE----EcC
Confidence 3588873 2233 3455666677778888876543332210 0111124677776 478
Q ss_pred CH--HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 83 DG--FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 83 DG--~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
|| +.+++.+. ...+||+-+- .|-..||.- +..+++...++.+++..
T Consensus 82 DGT~L~aar~~~-~~~~PilGIN-------------~G~lGFL~~-~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 82 DGTILRAAELAR-AADVPVLGVN-------------LGHVGFLAE-AEAEDLDEAVERVVDRD 129 (306)
T ss_pred CHHHHHHHHHhc-cCCCcEEEEe-------------cCCCceecc-CCHHHHHHHHHHHHcCC
Confidence 88 33344332 3578888654 366778874 77899999999887643
No 269
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=37.22 E-value=2.1e+02 Score=25.85 Aligned_cols=91 Identities=15% Similarity=0.111 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHhccCCCcEEEEEcCCCh
Q 005719 31 DDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDM--DGFKLLEHVGLEMDLPVIMLSAYGDT 108 (681)
Q Consensus 31 DD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdm--DG~elLe~I~~~~dlPVImLSa~~d~ 108 (681)
........+...|.+.|+.+....+.......+... .+-|+||+ +..++. +-.++++..+ ..++|||.+|...+.
T Consensus 10 ~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~-~~~d~vi~-iS~sG~t~~~~~~~~~a~-~~g~~vi~iT~~~~s 86 (128)
T cd05014 10 KSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMV-TPGDVVIA-ISNSGETDELLNLLPHLK-RRGAPIIAITGNPNS 86 (128)
T ss_pred HhHHHHHHHHHHhhcCCCceEEcccchhhccccCcC-CCCCEEEE-EeCCCCCHHHHHHHHHHH-HCCCeEEEEeCCCCC
Confidence 344455667777777888887765543222111111 22355554 333432 3345555543 457999999998765
Q ss_pred HHHHHHHhcCCcEEEeCCCCh
Q 005719 109 KLVMKGITHGACDYLLKPVRI 129 (681)
Q Consensus 109 e~v~kAl~~GA~DYLlKPvs~ 129 (681)
... ..|+..|.-|...
T Consensus 87 ~la-----~~ad~~l~~~~~~ 102 (128)
T cd05014 87 TLA-----KLSDVVLDLPVEE 102 (128)
T ss_pred chh-----hhCCEEEECCCCc
Confidence 433 3466667666433
No 270
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.87 E-value=1.3e+02 Score=32.63 Aligned_cols=99 Identities=26% Similarity=0.348 Sum_probs=58.1
Q ss_pred EEEEEe--CCHHHH---HHHHHHHHhCCCeEEEECCHHHHHHH-------HHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 005719 25 RVLAVD--DDPTCL---KVLENFLRACQYEVTVTNQAVTALKM-------LRENRNNFDLVISDVHMPDMDGFKLLEHVG 92 (681)
Q Consensus 25 RVLIVD--DD~~~r---~iL~~~Le~~gy~Vt~as~a~eALe~-------L~e~~~~pDLVLlDV~MPdmDG~elLe~I~ 92 (681)
+|+||- +.+... ..+.++|++.|++|.+.......+.. .......+|+||+ -+.||- +|+.++
T Consensus 7 ~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----lGGDGT-~L~aa~ 81 (292)
T PRK03378 7 CIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIV----VGGDGN-MLGAAR 81 (292)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEE----ECCcHH-HHHHHH
Confidence 587772 333333 44556666778888775543332210 0111224688877 478884 333332
Q ss_pred --ccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 93 --LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 93 --~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
...++||+-+- .|-.+||. .+..+++...+++++..
T Consensus 82 ~~~~~~~Pilgin-------------~G~lGFl~-~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 82 VLARYDIKVIGIN-------------RGNLGFLT-DLDPDNALQQLSDVLEG 119 (292)
T ss_pred HhcCCCCeEEEEE-------------CCCCCccc-ccCHHHHHHHHHHHHcC
Confidence 23468887654 35566765 67789999999988754
No 271
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=36.84 E-value=3.1e+02 Score=29.11 Aligned_cols=57 Identities=25% Similarity=0.300 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 81 DMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 81 dmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
+.-|+.+++.+. ..+|||..-.... ..+.+..|..+|+..|-+.++|...+..++..
T Consensus 289 Eg~~~~~lEAma--~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 289 EGFGLSLMEALS--HGLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEALAEAIIELLND 345 (372)
T ss_pred cccChHHHHHHh--CCCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHHHHHHHHHHcC
Confidence 344566666653 5689887532211 12346778899999999999999999888753
No 272
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=36.81 E-value=1.2e+02 Score=30.01 Aligned_cols=81 Identities=11% Similarity=0.126 Sum_probs=42.4
Q ss_pred HHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCCCCH-------HHHHHHHhcc-----CCCcEEEEEcC
Q 005719 41 NFLRACQYEVTVT---NQAVTALKMLRENRNNFDLVISDVHMPDMDG-------FKLLEHVGLE-----MDLPVIMLSAY 105 (681)
Q Consensus 41 ~~Le~~gy~Vt~a---s~a~eALe~L~e~~~~pDLVLlDV~MPdmDG-------~elLe~I~~~-----~dlPVImLSa~ 105 (681)
+.+++.+..+... .+..+.++.+.. ..|.|+++..-|+..| ++.++.++.. +.+||++..+
T Consensus 98 ~~~~~~g~~~~~~~~~~t~~e~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GG- 173 (210)
T TIGR01163 98 QLIKDLGAKAGIVLNPATPLEFLEYVLP---DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGG- 173 (210)
T ss_pred HHHHHcCCcEEEEECCCCCHHHHHHHHh---hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECC-
Confidence 4444445443332 223444444432 3577777654444333 3334444211 2356655444
Q ss_pred CChHHHHHHHhcCCcEEEeC
Q 005719 106 GDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 106 ~d~e~v~kAl~~GA~DYLlK 125 (681)
-..+.+.++++.||+.+++-
T Consensus 174 I~~env~~l~~~gad~iivg 193 (210)
T TIGR01163 174 VNDDNARELAEAGADILVAG 193 (210)
T ss_pred cCHHHHHHHHHcCCCEEEEC
Confidence 35677888889999987654
No 273
>PRK05637 anthranilate synthase component II; Provisional
Probab=36.76 E-value=55 Score=33.48 Aligned_cols=77 Identities=17% Similarity=0.258 Sum_probs=47.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEe--CCCCCCCHHHHHHHHhc-cCCCcEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISD--VHMPDMDGFKLLEHVGL-EMDLPVI 100 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlD--V~MPdmDG~elLe~I~~-~~dlPVI 100 (681)
-||||||...-+...|...|++.|+.+.++..... ++.+.. ..||.||+- ..-|. |.....+.++. ...+||+
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~--~~~~~iIlsgGPg~~~-d~~~~~~li~~~~~~~PiL 77 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILA--ANPDLICLSPGPGHPR-DAGNMMALIDRTLGQIPLL 77 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHh--cCCCEEEEeCCCCCHH-HhhHHHHHHHHHhCCCCEE
Confidence 37999999888889999999999998888775332 222322 247887772 22221 11112223321 2368988
Q ss_pred EEEc
Q 005719 101 MLSA 104 (681)
Q Consensus 101 mLSa 104 (681)
-++-
T Consensus 78 GICl 81 (208)
T PRK05637 78 GICL 81 (208)
T ss_pred EEcH
Confidence 8764
No 274
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.67 E-value=87 Score=39.15 Aligned_cols=73 Identities=18% Similarity=0.297 Sum_probs=49.9
Q ss_pred CceEEEEe-CCCCCCCHHHHHHHHhccCC--CcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 69 NFDLVISD-VHMPDMDGFKLLEHVGLEMD--LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 69 ~pDLVLlD-V~MPdmDG~elLe~I~~~~d--lPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
.+-|+|+| ++|-..+.+..|-++-.++. +.+|+.| .+...+...+..-+.-|-.||+..+++...+++++...
T Consensus 119 k~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaT--Te~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E 194 (944)
T PRK14949 119 RFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLAT--TDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE 194 (944)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEEC--CCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc
Confidence 46788888 77776666665444323333 4444443 34445566666667889999999999999999988654
No 275
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=36.58 E-value=2.1e+02 Score=37.05 Aligned_cols=102 Identities=17% Similarity=0.213 Sum_probs=66.1
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCC-CCH-HHHHHHHh-c
Q 005719 24 MRVLAV----DDDPTCLKVLENFLRACQYEVTVTN---QAVTALKMLRENRNNFDLVISDVHMPD-MDG-FKLLEHVG-L 93 (681)
Q Consensus 24 mRVLIV----DDD~~~r~iL~~~Le~~gy~Vt~as---~a~eALe~L~e~~~~pDLVLlDV~MPd-mDG-~elLe~I~-~ 93 (681)
-+||+. |-+..-..++.-+|+..||+|+-.. ...+.++.+.+. .+|+|.+...|.. +.. .++++.++ .
T Consensus 752 gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~--~~diVgLS~L~t~s~~~m~~~i~~L~~~ 829 (1229)
T PRK09490 752 GKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEE--NADIIGLSGLITPSLDEMVHVAKEMERQ 829 (1229)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHh--CCCEEEEcCcchhhHHHHHHHHHHHHhc
Confidence 377777 6777777777778888999999665 456677777654 4999999987754 443 34566664 3
Q ss_pred cCCCcEEEEEcCCChHHH-HH--HHhcCCcEEEeCCC
Q 005719 94 EMDLPVIMLSAYGDTKLV-MK--GITHGACDYLLKPV 127 (681)
Q Consensus 94 ~~dlPVImLSa~~d~e~v-~k--Al~~GA~DYLlKPv 127 (681)
..++||++=.+....... .+ ....||+.|..-.+
T Consensus 830 g~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~DA~ 866 (1229)
T PRK09490 830 GFTIPLLIGGATTSKAHTAVKIAPNYSGPVVYVTDAS 866 (1229)
T ss_pred CCCCeEEEEeeccchhhhhhhhhhcccCCcEEecCHH
Confidence 457787766555443331 11 11138888765443
No 276
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=36.56 E-value=2.5e+02 Score=36.31 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=67.3
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCC-CCHH-HHHHHHh-c
Q 005719 24 MRVLAV----DDDPTCLKVLENFLRACQYEVTVTN---QAVTALKMLRENRNNFDLVISDVHMPD-MDGF-KLLEHVG-L 93 (681)
Q Consensus 24 mRVLIV----DDD~~~r~iL~~~Le~~gy~Vt~as---~a~eALe~L~e~~~~pDLVLlDV~MPd-mDG~-elLe~I~-~ 93 (681)
-+|++. |-+..=..++.-+|+..||+|+-.. ...+.++.+.+. .+|+|-+...|.. +..+ ++++.++ .
T Consensus 733 gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~--~~diVgLS~Lmt~t~~~m~~vi~~L~~~ 810 (1178)
T TIGR02082 733 GKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDH--NADVIGLSGLITPSLDEMKEVAEEMNRR 810 (1178)
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHh--CCCEEEEcCcccccHHHHHHHHHHHHhc
Confidence 377777 6666666677778888899999665 356777777654 4999999887754 4443 4566664 3
Q ss_pred cCCCcEEEEEcCCChHHHHHH---HhcCCcEEEeCCCC
Q 005719 94 EMDLPVIMLSAYGDTKLVMKG---ITHGACDYLLKPVR 128 (681)
Q Consensus 94 ~~dlPVImLSa~~d~e~v~kA---l~~GA~DYLlKPvs 128 (681)
..++||++=.+....+.+..- ...||+.|-.-...
T Consensus 811 g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~dA~~ 848 (1178)
T TIGR02082 811 GITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVLDASR 848 (1178)
T ss_pred CCCceEEEeccccchhHHHhhhhhhccCCeEEecCHHH
Confidence 356777766655555554321 23488888654443
No 277
>PRK07695 transcriptional regulator TenI; Provisional
Probab=36.36 E-value=3e+02 Score=27.45 Aligned_cols=67 Identities=16% Similarity=0.288 Sum_probs=46.5
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEE
Q 005719 52 VTNQAVTALKMLRENRNNFDLVISDVHMPD-------MDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDY 122 (681)
Q Consensus 52 ~as~a~eALe~L~e~~~~pDLVLlDV~MPd-------mDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DY 122 (681)
.+.+..++.+... ..+|.|++....|. ..|++.++.+.....+||+++.+- +.+.+.+++..||+.+
T Consensus 101 s~~s~e~a~~a~~---~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 101 SVHSLEEAIQAEK---NGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred eCCCHHHHHHHHH---cCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 3455566555443 35788887643221 236788888866667999988777 7788889999999877
No 278
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=36.33 E-value=2.7e+02 Score=30.62 Aligned_cols=64 Identities=17% Similarity=0.251 Sum_probs=41.5
Q ss_pred CcEEEEEeCCHHHH-----HHHHHHHHhCCCeEEEECC---------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHH
Q 005719 23 GMRVLAVDDDPTCL-----KVLENFLRACQYEVTVTNQ---------AVTALKMLRENRNNFDLVISDVHMPDMDGFKLL 88 (681)
Q Consensus 23 GmRVLIVDDD~~~r-----~iL~~~Le~~gy~Vt~as~---------a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elL 88 (681)
|-|+|||-|..... +.+.+.|+..+.++.++.. ..++.+.+++. .+|+||- .-+..-+++.
T Consensus 25 g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGSviD~a 99 (357)
T cd08181 25 GKRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKF--NADFVIG---IGGGSPLDAA 99 (357)
T ss_pred CCEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhc--CCCEEEE---eCCchHHHHH
Confidence 46899998876522 5677788877777766542 34566666654 4788875 4556666666
Q ss_pred HHH
Q 005719 89 EHV 91 (681)
Q Consensus 89 e~I 91 (681)
|.+
T Consensus 100 K~i 102 (357)
T cd08181 100 KAI 102 (357)
T ss_pred HHH
Confidence 654
No 279
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=36.23 E-value=4.9e+02 Score=27.66 Aligned_cols=108 Identities=17% Similarity=0.249 Sum_probs=60.9
Q ss_pred CcEEEEEe---CCHHHHHHHHHHHHhCCC---eEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 005719 23 GMRVLAVD---DDPTCLKVLENFLRACQY---EVTVTN---QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL 93 (681)
Q Consensus 23 GmRVLIVD---DD~~~r~iL~~~Le~~gy---~Vt~as---~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~ 93 (681)
..+++++- +.+...+.+++.+...+. .|+.+. +..+..+.+. ..|++++--. .+.-|+.+++.+.
T Consensus 229 ~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~aDv~v~ps~-~e~~g~~~lEA~a- 302 (388)
T TIGR02149 229 DVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLS----NAEVFVCPSI-YEPLGIVNLEAMA- 302 (388)
T ss_pred cCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHH----hCCEEEeCCc-cCCCChHHHHHHH-
Confidence 34555542 233344555555554432 233332 2344444443 2577766322 2444666666653
Q ss_pred cCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCCh------HHHHHHHHHHHH
Q 005719 94 EMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRI------EELKNIWQHVIR 141 (681)
Q Consensus 94 ~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~------eEL~~i~q~Vlr 141 (681)
..+|||+. .... ..+.+..|...++.+|-+. ++|.+.+..++.
T Consensus 303 -~G~PvI~s-~~~~---~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~ 351 (388)
T TIGR02149 303 -CGTPVVAS-ATGG---IPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLA 351 (388)
T ss_pred -cCCCEEEe-CCCC---HHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHh
Confidence 56898864 3322 3445677888999999887 888888877654
No 280
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=36.19 E-value=1.3e+02 Score=31.43 Aligned_cols=54 Identities=19% Similarity=0.308 Sum_probs=35.9
Q ss_pred HHHHHHhccCCCcEEEEE-----cCCChHHHHHHHhcCCcEEEeC--CCC-hHHHHHHHHHH
Q 005719 86 KLLEHVGLEMDLPVIMLS-----AYGDTKLVMKGITHGACDYLLK--PVR-IEELKNIWQHV 139 (681)
Q Consensus 86 elLe~I~~~~dlPVImLS-----a~~d~e~v~kAl~~GA~DYLlK--Pvs-~eEL~~i~q~V 139 (681)
++++.++...++|+++|+ ..+....+.++.+.||+.+++. |+. .+++...++.+
T Consensus 64 ~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~ 125 (244)
T PRK13125 64 PLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEII 125 (244)
T ss_pred HHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHH
Confidence 466666666788987764 2234445778899999999986 344 45666555544
No 281
>PF13941 MutL: MutL protein
Probab=36.10 E-value=7.5e+02 Score=28.75 Aligned_cols=119 Identities=15% Similarity=0.149 Sum_probs=71.7
Q ss_pred CCcEEEEEeCCHHHH-HHHHHHHHhCCCeEEEECC---HHHHHHHHHhcCCCceEEEEeCCCCCCCH---HHHHHHH-hc
Q 005719 22 IGMRVLAVDDDPTCL-KVLENFLRACQYEVTVTNQ---AVTALKMLRENRNNFDLVISDVHMPDMDG---FKLLEHV-GL 93 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r-~iL~~~Le~~gy~Vt~as~---a~eALe~L~e~~~~pDLVLlDV~MPdmDG---~elLe~I-~~ 93 (681)
.|+|+.++-=-+..- +..++.-...|-.|..+.. ..+.++.+++. .||+||+-=--.+.+. +...+.| ..
T Consensus 75 GGLrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s~~l~~~~l~~i~~~--~PDiILLaGGtDgG~~~~il~nA~~La~~ 152 (457)
T PF13941_consen 75 GGLRMVVIGLVPDLTAEAAKRAALGAGARVLQVYSYELTEEDLEEIREI--RPDIILLAGGTDGGNKEVILHNAEMLAEA 152 (457)
T ss_pred CcceEEEEecCHHHHHHHHHHHHhcCCcEEEEEeccCCCHHHHHHHhcc--CCCEEEEeCCccCCchHHHHHHHHHHHhC
Confidence 479988887554433 3333333344666654332 34566667654 4999999433333332 3344555 34
Q ss_pred cCCCcEEEEEcCCChHHHHHHHh-cCCcEEEeCCC-------ChHHHHHHHHHHHHH
Q 005719 94 EMDLPVIMLSAYGDTKLVMKGIT-HGACDYLLKPV-------RIEELKNIWQHVIRR 142 (681)
Q Consensus 94 ~~dlPVImLSa~~d~e~v~kAl~-~GA~DYLlKPv-------s~eEL~~i~q~Vlrr 142 (681)
...+|||+-....-.+.+.+.+. .|..-|+..-+ ..+-.+..|+.+..+
T Consensus 153 ~~~~pVIyAGN~~a~~~v~~il~~~~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~~ 209 (457)
T PF13941_consen 153 NLRIPVIYAGNKAAQDEVEEILEKAGKEVVITENVMPKIDVLNVEPAREAIREVFLR 209 (457)
T ss_pred CCCCcEEEECCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCcChHHHHHHHHHHHHH
Confidence 56789998877777788888888 66666666533 345556666666443
No 282
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=35.97 E-value=2.2e+02 Score=30.05 Aligned_cols=56 Identities=23% Similarity=0.349 Sum_probs=36.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC-----CeEEE-ECCHHHHHHHHHhcCCCceEEEEeCCCCC
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQ-----YEVTV-TNQAVTALKMLRENRNNFDLVISDVHMPD 81 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~g-----y~Vt~-as~a~eALe~L~e~~~~pDLVLlDV~MPd 81 (681)
..+|.+||-++...+..++.+...+ -++.+ ..++.+.++ .....||+||+|..-|.
T Consensus 96 ~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~---~~~~~yDvIi~D~~~~~ 157 (270)
T TIGR00417 96 VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLA---DTENTFDVIIVDSTDPV 157 (270)
T ss_pred cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHH---hCCCCccEEEEeCCCCC
Confidence 4578999999999888888775431 12332 344444443 33356999999986543
No 283
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=35.94 E-value=1e+02 Score=32.00 Aligned_cols=75 Identities=19% Similarity=0.129 Sum_probs=44.4
Q ss_pred cEEEEEeCCH------HHHHHHHHHHHhCCCeEEEECCHHH-HHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 005719 24 MRVLAVDDDP------TCLKVLENFLRACQYEVTVTNQAVT-ALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMD 96 (681)
Q Consensus 24 mRVLIVDDD~------~~r~iL~~~Le~~gy~Vt~as~a~e-ALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~d 96 (681)
||||++-... .....+.+.|.+.|++|+++..... ..+.+. ...+|+|.+-......-....+..+. ..
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~--~~~~diih~~~~~~~~~~~~~~~~~~--~~ 76 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIE--IINADIVHLHWIHGGFLSIEDLSKLL--DR 76 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChh--cccCCEEEEEccccCccCHHHHHHHH--cC
Confidence 6888886553 4666677788888999887664433 333333 24599998744333333333343332 46
Q ss_pred CcEEEE
Q 005719 97 LPVIML 102 (681)
Q Consensus 97 lPVImL 102 (681)
+|+|+.
T Consensus 77 ~~~v~~ 82 (365)
T cd03825 77 KPVVWT 82 (365)
T ss_pred CCEEEE
Confidence 787654
No 284
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=35.93 E-value=84 Score=32.17 Aligned_cols=60 Identities=12% Similarity=0.140 Sum_probs=34.6
Q ss_pred EEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHH
Q 005719 74 ISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKN 134 (681)
Q Consensus 74 LlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~ 134 (681)
++++.+-.-+.+++++.++.+..--+|=...--+.+.+.+++++||. |++-|.--+++.+
T Consensus 36 ~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~-FivSP~~~~~v~~ 95 (196)
T PF01081_consen 36 AIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQ-FIVSPGFDPEVIE 95 (196)
T ss_dssp EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-S-EEEESS--HHHHH
T ss_pred EEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCC-EEECCCCCHHHHH
Confidence 45555555677888887753322234445555688899999999995 5555654444433
No 285
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=35.71 E-value=4.1e+02 Score=27.63 Aligned_cols=89 Identities=7% Similarity=-0.018 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhCCCeEEEECCH---HHHHHHHHhcCCCceEEEEeCCCCCC------CHHHHHHHHhccC-CCcEEEEEc
Q 005719 35 CLKVLENFLRACQYEVTVTNQA---VTALKMLRENRNNFDLVISDVHMPDM------DGFKLLEHVGLEM-DLPVIMLSA 104 (681)
Q Consensus 35 ~r~iL~~~Le~~gy~Vt~as~a---~eALe~L~e~~~~pDLVLlDV~MPdm------DG~elLe~I~~~~-dlPVImLSa 104 (681)
....+...+++.|.++..+-+. .+.++.+... ...++++ -.+|+- +-.+.+++++... +.||++=.+
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~--~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gG 193 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKL--SPLFIYY-GLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFG 193 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHh--CCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 3445666677778766654433 3444444332 2456666 345542 1133455554333 467654444
Q ss_pred CCChHHHHHHHhcCCcEEEeCC
Q 005719 105 YGDTKLVMKGITHGACDYLLKP 126 (681)
Q Consensus 105 ~~d~e~v~kAl~~GA~DYLlKP 126 (681)
-.+.+.+.++++.||+.++.--
T Consensus 194 I~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 194 LDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred cCCHHHHHHHHHcCCCEEEECH
Confidence 4477888888999999998875
No 286
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=35.71 E-value=1.7e+02 Score=31.56 Aligned_cols=70 Identities=20% Similarity=0.278 Sum_probs=46.3
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCC-----CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCC-----HHHHHHH
Q 005719 21 PIGMRVLAVDDDPTCLKVLENFLRACQ-----YEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD-----GFKLLEH 90 (681)
Q Consensus 21 P~GmRVLIVDDD~~~r~iL~~~Le~~g-----y~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmD-----G~elLe~ 90 (681)
+.--||.+||=|+.+.+..+++|.... -+|.+. ..++.+.++.....||+||+|..-|..- .-++.+.
T Consensus 98 ~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~--i~Dg~~~v~~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~ 175 (282)
T COG0421 98 LPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEII--IDDGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYEG 175 (282)
T ss_pred CCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEE--eccHHHHHHhCCCcCCEEEEcCCCCCCcccccCCHHHHHH
Confidence 333488999999999999999986532 233322 2355555555445699999999888422 2355666
Q ss_pred Hh
Q 005719 91 VG 92 (681)
Q Consensus 91 I~ 92 (681)
++
T Consensus 176 ~~ 177 (282)
T COG0421 176 CR 177 (282)
T ss_pred HH
Confidence 54
No 287
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=35.56 E-value=4.5e+02 Score=29.35 Aligned_cols=107 Identities=11% Similarity=0.124 Sum_probs=65.6
Q ss_pred CcEEEEEeCCH-----HHHHHHHHHHHhCCC--eEEEECC--HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 005719 23 GMRVLAVDDDP-----TCLKVLENFLRACQY--EVTVTNQ--AVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL 93 (681)
Q Consensus 23 GmRVLIVDDD~-----~~r~iL~~~Le~~gy--~Vt~as~--a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~ 93 (681)
.++++||.+.+ ...+.|+++.+..+. .|..... -.+..+.++. .|+++.- ...+.=|+.++|.+.
T Consensus 273 ~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~----adv~v~~-s~~E~Fgi~~lEAMa- 346 (419)
T cd03806 273 KIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELST----ASIGLHT-MWNEHFGIGVVEYMA- 346 (419)
T ss_pred ceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHh----CeEEEEC-CccCCcccHHHHHHH-
Confidence 57888887642 355667777666554 4665553 3455555542 5777652 233444777777763
Q ss_pred cCCCcEEEEEcCCChHHHHHHHh---cCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 94 EMDLPVIMLSAYGDTKLVMKGIT---HGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 94 ~~dlPVImLSa~~d~e~v~kAl~---~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
..+|||+......... .++ .|..+|+.. +.+++.+.+..++.
T Consensus 347 -~G~pvIa~~~ggp~~~---iv~~~~~g~~G~l~~--d~~~la~ai~~ll~ 391 (419)
T cd03806 347 -AGLIPLAHASGGPLLD---IVVPWDGGPTGFLAS--TAEEYAEAIEKILS 391 (419)
T ss_pred -cCCcEEEEcCCCCchh---eeeccCCCCceEEeC--CHHHHHHHHHHHHh
Confidence 4577775432222222 244 678889863 89999999988875
No 288
>PRK10060 RNase II stability modulator; Provisional
Probab=35.53 E-value=3e+02 Score=32.84 Aligned_cols=100 Identities=13% Similarity=0.126 Sum_probs=67.3
Q ss_pred HHHHHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCC----C-CCCHHHHHHHH---hccCCCcEEEEEcC
Q 005719 36 LKVLENFLRACQYEVTV--TNQAVTALKMLRENRNNFDLVISDVHM----P-DMDGFKLLEHV---GLEMDLPVIMLSAY 105 (681)
Q Consensus 36 r~iL~~~Le~~gy~Vt~--as~a~eALe~L~e~~~~pDLVLlDV~M----P-dmDG~elLe~I---~~~~dlPVImLSa~ 105 (681)
...+...|++.|+.+.. +..+...+..|..- ++|.|=+|-.. . +.....+++.| ....++.||+ ...
T Consensus 543 ~~~~l~~L~~~G~~ialDdfGtg~ssl~~L~~l--~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viA-eGV 619 (663)
T PRK10060 543 ALSVIQQFSQLGAQVHLDDFGTGYSSLSQLARF--PIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIA-EGV 619 (663)
T ss_pred HHHHHHHHHHCCCEEEEECCCCchhhHHHHHhC--CCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEE-ecC
Confidence 33444567778998876 55677778888754 58999999533 2 22345556654 2445666664 455
Q ss_pred CChHHHHHHHhcCCcE----EEeCCCChHHHHHHHHH
Q 005719 106 GDTKLVMKGITHGACD----YLLKPVRIEELKNIWQH 138 (681)
Q Consensus 106 ~d~e~v~kAl~~GA~D----YLlKPvs~eEL~~i~q~ 138 (681)
++.+....+...|++. |+.||+..+++...++.
T Consensus 620 Et~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~ 656 (663)
T PRK10060 620 ETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKR 656 (663)
T ss_pred CCHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHh
Confidence 6667777777888864 68899999998775543
No 289
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=35.46 E-value=2.9e+02 Score=27.44 Aligned_cols=77 Identities=6% Similarity=-0.045 Sum_probs=53.3
Q ss_pred HHhCCCeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEEEcCCChHHHHHHHhcCCc
Q 005719 43 LRACQYEV-TVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE-MDLPVIMLSAYGDTKLVMKGITHGAC 120 (681)
Q Consensus 43 Le~~gy~V-t~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~-~dlPVImLSa~~d~e~v~kAl~~GA~ 120 (681)
.+..+..+ .-+.+..|+.+.++ ..+|+|-++- .+.. |.++++.+... +.+|++.+..- +.+.+.+.++.||+
T Consensus 93 ~~~~~~~~i~gv~t~~e~~~A~~---~Gad~i~~~p-~~~~-g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~ 166 (190)
T cd00452 93 ANRAGIPLLPGVATPTEIMQALE---LGADIVKLFP-AEAV-GPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVV 166 (190)
T ss_pred HHHcCCcEECCcCCHHHHHHHHH---CCCCEEEEcC-Cccc-CHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCE
Confidence 33344333 34567888888775 3489998854 3333 89999988643 46888877666 77889999999987
Q ss_pred EEEeC
Q 005719 121 DYLLK 125 (681)
Q Consensus 121 DYLlK 125 (681)
....-
T Consensus 167 ~v~v~ 171 (190)
T cd00452 167 AVGGG 171 (190)
T ss_pred EEEEc
Confidence 76544
No 290
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=35.10 E-value=2.6e+02 Score=30.96 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=39.6
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCeEEEECC---------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 005719 24 MRVLAVDDDPT----CLKVLENFLRACQYEVTVTNQ---------AVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEH 90 (681)
Q Consensus 24 mRVLIVDDD~~----~r~iL~~~Le~~gy~Vt~as~---------a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~ 90 (681)
-|||||-|... ..+.+.+.|+..+..+.++.. ..++.+.+++. .+|+||- .-+..-+++.|.
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---iGGGS~~D~AKa 98 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEG--GCDVIIA---LGGGSPIDTAKA 98 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhc--CCCEEEE---eCCchHHHHHHH
Confidence 48999987644 335577778777777766532 34566666543 4888874 345555666665
Q ss_pred H
Q 005719 91 V 91 (681)
Q Consensus 91 I 91 (681)
+
T Consensus 99 i 99 (375)
T cd08194 99 I 99 (375)
T ss_pred H
Confidence 4
No 291
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=34.74 E-value=1.2e+02 Score=35.19 Aligned_cols=78 Identities=21% Similarity=0.202 Sum_probs=48.4
Q ss_pred CCcEEEEEeCCHHHH--HHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH-------HHHHHHHh
Q 005719 22 IGMRVLAVDDDPTCL--KVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDG-------FKLLEHVG 92 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r--~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG-------~elLe~I~ 92 (681)
+.+||+|||..|.+. ..|+. |...|+.|+.+.- .|+..+.. +.+.||+..+--=.+| -..+..+.
T Consensus 384 k~frVvVVDSRP~~EG~~~lr~-Lv~~GinctYv~I--~a~syim~---evtkvfLGahailsNG~vysR~GTa~valvA 457 (556)
T KOG1467|consen 384 KKFRVVVVDSRPNLEGRKLLRR-LVDRGINCTYVLI--NAASYIML---EVTKVFLGAHAILSNGAVYSRVGTACVALVA 457 (556)
T ss_pred cceEEEEEeCCCCcchHHHHHH-HHHcCCCeEEEEe--hhHHHHHH---hcceeeechhhhhcCcchhhhcchHHHHHHh
Confidence 458999999887653 33433 4445888886542 22232221 2677888776544444 34455566
Q ss_pred ccCCCcEEEEEcC
Q 005719 93 LEMDLPVIMLSAY 105 (681)
Q Consensus 93 ~~~dlPVImLSa~ 105 (681)
...++|||+.+..
T Consensus 458 na~nVPVlVCCE~ 470 (556)
T KOG1467|consen 458 NAFNVPVLVCCEA 470 (556)
T ss_pred cccCCCEEEEech
Confidence 7789999998754
No 292
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=34.74 E-value=5.1e+02 Score=28.31 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=23.7
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC
Q 005719 20 FPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTN 54 (681)
Q Consensus 20 fP~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as 54 (681)
-|..++|||+..-...+..+.. +.+.||.|..+.
T Consensus 9 ~~~~~~ilIiG~g~~~~~~~~a-~~~~G~~v~~~~ 42 (395)
T PRK09288 9 SPSATRVMLLGSGELGKEVAIE-AQRLGVEVIAVD 42 (395)
T ss_pred CCCCCEEEEECCCHHHHHHHHH-HHHCCCEEEEEe
Confidence 4566799999988766655554 666788776543
No 293
>PRK00654 glgA glycogen synthase; Provisional
Probab=34.73 E-value=4.7e+02 Score=29.59 Aligned_cols=108 Identities=12% Similarity=0.151 Sum_probs=58.9
Q ss_pred CcEEEEEeCC-HHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 005719 23 GMRVLAVDDD-PTCLKVLENFLRACQYEVTVTN--QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPV 99 (681)
Q Consensus 23 GmRVLIVDDD-~~~r~iL~~~Le~~gy~Vt~as--~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPV 99 (681)
+++++|+.+- +.....++++.++.+-.+.... +...+-..+. ..|++++-- .-+.-|+..++.+. ..+|+
T Consensus 311 ~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~----~aDv~v~PS-~~E~~gl~~lEAma--~G~p~ 383 (466)
T PRK00654 311 GGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRIYA----GADMFLMPS-RFEPCGLTQLYALR--YGTLP 383 (466)
T ss_pred CCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHh----hCCEEEeCC-CCCCchHHHHHHHH--CCCCE
Confidence 4566666543 3344555555555544443221 2111112222 257776632 23445666666653 45677
Q ss_pred EEEEcCCChHHHHHHHhcC------CcEEEeCCCChHHHHHHHHHHHH
Q 005719 100 IMLSAYGDTKLVMKGITHG------ACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~G------A~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
|+ +...... +.+..| ...|+..|-+.++|...+..++.
T Consensus 384 V~-~~~gG~~---e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~l~ 427 (466)
T PRK00654 384 IV-RRTGGLA---DTVIDYNPEDGEATGFVFDDFNAEDLLRALRRALE 427 (466)
T ss_pred EE-eCCCCcc---ceeecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 65 3332221 223444 77999999999999999888764
No 294
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=34.72 E-value=2.6e+02 Score=31.83 Aligned_cols=99 Identities=18% Similarity=0.233 Sum_probs=59.2
Q ss_pred CCcEEEEEeC-CHHHHHHHHHHHHhCCCeEEEECC--HHHHHHHHHhcCCCceEEEEeCC-CCCCC--HHHHHHHHhccC
Q 005719 22 IGMRVLAVDD-DPTCLKVLENFLRACQYEVTVTNQ--AVTALKMLRENRNNFDLVISDVH-MPDMD--GFKLLEHVGLEM 95 (681)
Q Consensus 22 ~GmRVLIVDD-D~~~r~iL~~~Le~~gy~Vt~as~--a~eALe~L~e~~~~pDLVLlDV~-MPdmD--G~elLe~I~~~~ 95 (681)
.|=+||+.+| ---.+..+..+|.+.|.+|+.+.. ..+.++.+.. ...++|+++.= -|-|. -+..+.++....
T Consensus 101 ~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~ 178 (396)
T COG0626 101 AGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE--PNTKLVFLETPSNPLLEVPDIPAIARLAKAY 178 (396)
T ss_pred CCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc--cCceEEEEeCCCCcccccccHHHHHHHHHhc
Confidence 3668888887 455677888889999999997774 3344555542 24799999861 23222 233344443334
Q ss_pred CCcEEEEEcCCChHHHHHHHhcCCcEEE
Q 005719 96 DLPVIMLSAYGDTKLVMKGITHGACDYL 123 (681)
Q Consensus 96 dlPVImLSa~~d~e~v~kAl~~GA~DYL 123 (681)
. .++++=..-..-...+.+++|||-++
T Consensus 179 g-~~vvVDNTfatP~~q~PL~~GaDIVv 205 (396)
T COG0626 179 G-ALVVVDNTFATPVLQRPLELGADIVV 205 (396)
T ss_pred C-CEEEEECCcccccccChhhcCCCEEE
Confidence 4 44444333333455667777776543
No 295
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=34.71 E-value=5.6e+02 Score=26.82 Aligned_cols=107 Identities=20% Similarity=0.308 Sum_probs=59.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECC--HHHHHHHHHhcCCCceEEEEeCCC-C----CCCHHHHHHHHhcc
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQ--YEVTVTNQ--AVTALKMLRENRNNFDLVISDVHM-P----DMDGFKLLEHVGLE 94 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~g--y~Vt~as~--a~eALe~L~e~~~~pDLVLlDV~M-P----dmDG~elLe~I~~~ 94 (681)
++++||.+.+. ...++.+.+..+ ..|..... ..+..+.+. ..|++++-... + +.-|..+++.+.
T Consensus 220 ~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~----~ad~~v~ps~~~~~~~~E~~~~~~~EA~a-- 292 (367)
T cd05844 220 VRLVIIGDGPL-LAALEALARALGLGGRVTFLGAQPHAEVRELMR----RARIFLQPSVTAPSGDAEGLPVVLLEAQA-- 292 (367)
T ss_pred eEEEEEeCchH-HHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHH----hCCEEEECcccCCCCCccCCchHHHHHHH--
Confidence 55666665432 234455554432 23443332 233333343 14665553221 1 223667777764
Q ss_pred CCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 95 MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 95 ~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
..+|||.-.. .. ..+.+..|...++..|-+.++|.+.+..++.
T Consensus 293 ~G~PvI~s~~-~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 335 (367)
T cd05844 293 SGVPVVATRH-GG---IPEAVEDGETGLLVPEGDVAALAAALGRLLA 335 (367)
T ss_pred cCCCEEEeCC-CC---chhheecCCeeEEECCCCHHHHHHHHHHHHc
Confidence 5689885432 22 2334566778899999999999999988764
No 296
>PRK05670 anthranilate synthase component II; Provisional
Probab=34.66 E-value=50 Score=32.79 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=50.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCC-C-C-CC-CHHHHHHHHhccCCCcEEE
Q 005719 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVH-M-P-DM-DGFKLLEHVGLEMDLPVIM 101 (681)
Q Consensus 26 VLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~-M-P-dm-DG~elLe~I~~~~dlPVIm 101 (681)
|||||-...+-..+.++|++.|++++++.......+.+.. ..||.||+-=- + | +. .-.++++.+ ...+||+-
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dglIlsgGpg~~~d~~~~~~~l~~~--~~~~PvLG 77 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEA--LNPDAIVLSPGPGTPAEAGISLELIREF--AGKVPILG 77 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHh--CCCCEEEEcCCCCChHHcchHHHHHHHh--cCCCCEEE
Confidence 8999999999999999999999998877653211222222 23787776210 0 1 00 112333332 24589888
Q ss_pred EEcCCChHHHHHHHhcCCc
Q 005719 102 LSAYGDTKLVMKGITHGAC 120 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA~ 120 (681)
++- ....-+...|+.
T Consensus 78 ICl----G~Qlla~alGg~ 92 (189)
T PRK05670 78 VCL----GHQAIGEAFGGK 92 (189)
T ss_pred ECH----HHHHHHHHhCCE
Confidence 864 333334455654
No 297
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=34.47 E-value=3e+02 Score=27.05 Aligned_cols=75 Identities=13% Similarity=0.209 Sum_probs=49.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC--CCeEEEECC-------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRAC--QYEVTVTNQ-------AVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG 92 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~--gy~Vt~as~-------a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~ 92 (681)
.+.+|.++-..+...+.+.+.|++. +..++-+.+ ..+.++.+.. ..+|+|++-+-+|... .++...+
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~--~~pdiv~vglG~PkQE--~~~~~~~ 122 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINA--SGPDIVFVGLGAPKQE--RWIARHR 122 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHH--cCCCEEEEECCCCHHH--HHHHHHH
Confidence 3679999999999999999988775 445553333 2334445553 4599999999888754 3344444
Q ss_pred ccCCCcEE
Q 005719 93 LEMDLPVI 100 (681)
Q Consensus 93 ~~~dlPVI 100 (681)
.....+|+
T Consensus 123 ~~l~~~v~ 130 (172)
T PF03808_consen 123 QRLPAGVI 130 (172)
T ss_pred HHCCCCEE
Confidence 44455543
No 298
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=34.33 E-value=4.5e+02 Score=27.14 Aligned_cols=66 Identities=21% Similarity=0.275 Sum_probs=43.5
Q ss_pred ceEEEEeCCCC-----CCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 70 FDLVISDVHMP-----DMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 70 pDLVLlDV~MP-----dmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
.|++++-..-+ +.-|..+++.+. ..+|||.. .... ..+.++.+..+++.+|-+.+++.+.+..++.
T Consensus 256 adi~l~~s~~~~~~~~e~~~~~~~Ea~a--~G~Pvi~~-~~~~---~~~~i~~~~~g~~~~~~~~~~l~~~i~~~~~ 326 (355)
T cd03799 256 ADLFVLPSVTAADGDREGLPVVLMEAMA--MGLPVIST-DVSG---IPELVEDGETGLLVPPGDPEALADAIERLLD 326 (355)
T ss_pred CCEEEecceecCCCCccCccHHHHHHHH--cCCCEEec-CCCC---cchhhhCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 56666633321 333666777653 56888853 2222 2345677878999999999999999988764
No 299
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=34.26 E-value=5e+02 Score=26.50 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=51.2
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCC---CCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEe------
Q 005719 55 QAVTALKMLRENRNNFD-LVISDVHMP---DMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLL------ 124 (681)
Q Consensus 55 ~a~eALe~L~e~~~~pD-LVLlDV~MP---dmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLl------ 124 (681)
+..+..+.+... .++ +++.|+..- ..-.+++++.+....++|||+...-.+.+.+.+....||+..++
T Consensus 150 ~~~~~~~~~~~~--G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~ 227 (241)
T PRK13585 150 TPVEAAKRFEEL--GAGSILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYK 227 (241)
T ss_pred CHHHHHHHHHHc--CCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence 344444444432 344 566666422 22346788888766789999998888888898899999998654
Q ss_pred CCCChHHHHH
Q 005719 125 KPVRIEELKN 134 (681)
Q Consensus 125 KPvs~eEL~~ 134 (681)
.|+..+++..
T Consensus 228 ~~~~~~~~~~ 237 (241)
T PRK13585 228 GKFTLEEAIE 237 (241)
T ss_pred CCcCHHHHHH
Confidence 4555555443
No 300
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=34.26 E-value=2.3e+02 Score=27.91 Aligned_cols=69 Identities=16% Similarity=0.090 Sum_probs=47.9
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCCCCCC-------CHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEE
Q 005719 51 TVTNQAVTALKMLRENRNNFDLVISDVHMPDM-------DGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYL 123 (681)
Q Consensus 51 t~as~a~eALe~L~e~~~~pDLVLlDV~MPdm-------DG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYL 123 (681)
..+.+..++.++.+ ..+|.|++..-.|.. -|++.++.+.....+||+++.+-. .+.+.+..+.||+.+-
T Consensus 100 ~S~h~~~e~~~a~~---~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI~-~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 100 ASCHSLEEAREAEE---LGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGIT-PENIPELREAGADGVA 175 (180)
T ss_dssp EEESSHHHHHHHHH---CTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHHHTT-SEEE
T ss_pred eecCcHHHHHHhhh---cCCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCCC-HHHHHHHHHcCCCEEE
Confidence 46778888666554 347999988765432 388888888767779999997764 4556678899998764
No 301
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.24 E-value=1.9e+02 Score=31.44 Aligned_cols=95 Identities=12% Similarity=0.008 Sum_probs=0.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhC------CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 005719 26 VLAVDDDPTCLKVLENFLRAC------QYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLP 98 (681)
Q Consensus 26 VLIVDDD~~~r~iL~~~Le~~------gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlP 98 (681)
|||-|.+-...-.+.+.+... ...|. .+.+..++.+++... +|+|.+| +|.-.+--++++.++....-.
T Consensus 169 ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~G---aD~I~LD-n~~~e~l~~av~~~~~~~~~i 244 (288)
T PRK07428 169 VMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALEYG---ADIIMLD-NMPVDLMQQAVQLIRQQNPRV 244 (288)
T ss_pred eeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcC---CCEEEEC-CCCHHHHHHHHHHHHhcCCCe
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
.|..++.-+.+.+.+....|++..-+
T Consensus 245 ~leAsGGIt~~ni~~ya~tGvD~Isv 270 (288)
T PRK07428 245 KIEASGNITLETIRAVAETGVDYISS 270 (288)
T ss_pred EEEEECCCCHHHHHHHHHcCCCEEEE
No 302
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=34.15 E-value=4.1e+02 Score=27.93 Aligned_cols=94 Identities=16% Similarity=0.133 Sum_probs=60.3
Q ss_pred EEeCCHHHHHHHHHHHHhCCCeEEEEC----C---HHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHhccC-CC
Q 005719 28 AVDDDPTCLKVLENFLRACQYEVTVTN----Q---AVTALKMLRENRNNFDLVISDVHMPDM--DGFKLLEHVGLEM-DL 97 (681)
Q Consensus 28 IVDDD~~~r~iL~~~Le~~gy~Vt~as----~---a~eALe~L~e~~~~pDLVLlDV~MPdm--DG~elLe~I~~~~-dl 97 (681)
+..|.....++++.+- ..+..|++-- . ..+..+.+.+ ...|.|.+|...++. -.++.++.++... ++
T Consensus 116 Ll~dp~~l~~iv~av~-~~~~PVsvKiR~~~~~~~~~~~a~~l~~--aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~i 192 (231)
T TIGR00736 116 LLKNKELLKEFLTKMK-ELNKPIFVKIRGNCIPLDELIDALNLVD--DGFDGIHVDAMYPGKPYADMDLLKILSEEFNDK 192 (231)
T ss_pred hcCCHHHHHHHHHHHH-cCCCcEEEEeCCCCCcchHHHHHHHHHH--cCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCC
Confidence 3445555555555444 4454444321 1 1133333432 458999889766653 2477888886665 59
Q ss_pred cEEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 98 PVIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 98 PVImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
|||..-.-.+.+.+.+.++.||+...+
T Consensus 193 pIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 193 IIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred cEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 999998888999999999999988754
No 303
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=34.15 E-value=1.2e+02 Score=32.10 Aligned_cols=94 Identities=18% Similarity=0.260 Sum_probs=53.6
Q ss_pred HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHH
Q 005719 36 LKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGI 115 (681)
Q Consensus 36 r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl 115 (681)
-..|.++.++.|.......-..++++++.+ +++-++=|.-.+.+-+.+|+.+.. .+.|||+=|+-...+++.+|+
T Consensus 58 ~~~L~~~~~~~gi~f~stpfd~~s~d~l~~----~~~~~~KIaS~dl~n~~lL~~~A~-tgkPvIlSTG~stl~EI~~Av 132 (241)
T PF03102_consen 58 HKELFEYCKELGIDFFSTPFDEESVDFLEE----LGVPAYKIASGDLTNLPLLEYIAK-TGKPVILSTGMSTLEEIERAV 132 (241)
T ss_dssp HHHHHHHHHHTT-EEEEEE-SHHHHHHHHH----HT-SEEEE-GGGTT-HHHHHHHHT-T-S-EEEE-TT--HHHHHHHH
T ss_pred HHHHHHHHHHcCCEEEECCCCHHHHHHHHH----cCCCEEEeccccccCHHHHHHHHH-hCCcEEEECCCCCHHHHHHHH
Confidence 345677777778777665556777888854 345555556677888999999854 789999999888777776655
Q ss_pred ----hcCCcEEEe------CCCChHHHHH
Q 005719 116 ----THGACDYLL------KPVRIEELKN 134 (681)
Q Consensus 116 ----~~GA~DYLl------KPvs~eEL~~ 134 (681)
+.|..++.+ -|...+++.-
T Consensus 133 ~~~~~~~~~~l~llHC~s~YP~~~e~~NL 161 (241)
T PF03102_consen 133 EVLREAGNEDLVLLHCVSSYPTPPEDVNL 161 (241)
T ss_dssp HHHHHHCT--EEEEEE-SSSS--GGG--T
T ss_pred HHHHhcCCCCEEEEecCCCCCCChHHcCh
Confidence 346665532 2666666643
No 304
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=33.88 E-value=3.4e+02 Score=29.69 Aligned_cols=56 Identities=18% Similarity=0.235 Sum_probs=32.5
Q ss_pred CCCcEEEEEeCCHHHH---HHHHHHHHhCCCeEEEEC---CH----HHHHHHHHhcCCCceEEEEeCC
Q 005719 21 PIGMRVLAVDDDPTCL---KVLENFLRACQYEVTVTN---QA----VTALKMLRENRNNFDLVISDVH 78 (681)
Q Consensus 21 P~GmRVLIVDDD~~~r---~iL~~~Le~~gy~Vt~as---~a----~eALe~L~e~~~~pDLVLlDV~ 78 (681)
+.|.+|+|++-|.... +.+..+.++.+..+.... +. .+++.... ...+|+||+|.-
T Consensus 140 ~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~--~~~~D~ViIDTa 205 (318)
T PRK10416 140 AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK--ARGIDVLIIDTA 205 (318)
T ss_pred hcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH--hCCCCEEEEeCC
Confidence 4577999999886322 334445555565555442 21 23333322 246999999983
No 305
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=33.73 E-value=1.2e+02 Score=21.82 Aligned_cols=43 Identities=23% Similarity=0.306 Sum_probs=33.1
Q ss_pred ccchhhHHHHHHHHHHhcCCCCChhhHHhhcCCCCCcHHHHHHhhhh
Q 005719 216 VWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQK 262 (681)
Q Consensus 216 ~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~v~glt~~~v~ShLqk 262 (681)
.||.+=+..|+.++.+.|. ..-+.|.+.| ++-|..+|+.|.++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~--~~w~~Ia~~~--~~rs~~~~~~~~~~ 43 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK--NNWEKIAKEL--PGRTPKQCRERWRN 43 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc--CCHHHHHhHc--CCCCHHHHHHHHHH
Confidence 4999999999999999994 2346777776 45788888886544
No 306
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=33.69 E-value=4.1e+02 Score=34.01 Aligned_cols=111 Identities=20% Similarity=0.139 Sum_probs=68.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCe-------------EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYE-------------VTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLE 89 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~-------------Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe 89 (681)
..||+||--=...+..++.+.+..+++ |+++....+..+.+.+.......|-+|+. |--++.+
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~----D~e~L~~ 644 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVS----DSESLLK 644 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecC----CHHHHHH
Confidence 458999998777766665555544444 66676443333434332223456777753 3334444
Q ss_pred HHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 005719 90 HVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139 (681)
Q Consensus 90 ~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~V 139 (681)
.+.. .++-|+++-.......+..|+++|..-+..| +..++.+.+...+
T Consensus 645 ~v~~-~DaVIsalP~~~H~~VAkaAieaGkHvv~ek-y~~~e~~~L~e~A 692 (1042)
T PLN02819 645 YVSQ-VDVVISLLPASCHAVVAKACIELKKHLVTAS-YVSEEMSALDSKA 692 (1042)
T ss_pred hhcC-CCEEEECCCchhhHHHHHHHHHcCCCEEECc-CCHHHHHHHHHHH
Confidence 4432 4555555555567788899999999888787 6777776666554
No 307
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=33.52 E-value=72 Score=33.40 Aligned_cols=65 Identities=22% Similarity=0.378 Sum_probs=43.2
Q ss_pred CCCCCCCcEEEEEeCCHHHHHHHHHHHHhC-----CCeEE-EECCHHHHHHHHHhcCC-CceEEEEeCCCCCCCH
Q 005719 17 IDKFPIGMRVLAVDDDPTCLKVLENFLRAC-----QYEVT-VTNQAVTALKMLRENRN-NFDLVISDVHMPDMDG 84 (681)
Q Consensus 17 ~~~fP~GmRVLIVDDD~~~r~iL~~~Le~~-----gy~Vt-~as~a~eALe~L~e~~~-~pDLVLlDV~MPdmDG 84 (681)
.-+.|.-.+|-+||=|+.+.+..++++... +-++. +..++...++ +... .||+||+|+.-|...+
T Consensus 94 ll~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~---~~~~~~yDvIi~D~~dp~~~~ 165 (246)
T PF01564_consen 94 LLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLK---ETQEEKYDVIIVDLTDPDGPA 165 (246)
T ss_dssp HTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHH---TSSST-EEEEEEESSSTTSCG
T ss_pred hhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHH---hccCCcccEEEEeCCCCCCCc
Confidence 345565578999999999999999988642 12344 4555555554 4344 6999999998876543
No 308
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=33.49 E-value=3.4e+02 Score=28.05 Aligned_cols=105 Identities=18% Similarity=0.269 Sum_probs=58.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQ--YEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVI 100 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~g--y~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVI 100 (681)
..+++|+.+.+. ...++++++..+ ..|.......+..+.+.. .|++++-... +.-|..+++.+. ..+|||
T Consensus 219 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~~s~~-e~~~~~~~Ea~a--~G~PvI 290 (360)
T cd04951 219 DIKLLIAGDGPL-RATLERLIKALGLSNRVKLLGLRDDIAAYYNA----ADLFVLSSAW-EGFGLVVAEAMA--CELPVV 290 (360)
T ss_pred CeEEEEEcCCCc-HHHHHHHHHhcCCCCcEEEecccccHHHHHHh----hceEEecccc-cCCChHHHHHHH--cCCCEE
Confidence 356666765443 244555555443 235444443343344432 4666654332 333666777663 467887
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
+ +.... ..+.+.. .+++..+-+.+++.+.+..++.
T Consensus 291 ~-~~~~~---~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~ 325 (360)
T cd04951 291 A-TDAGG---VREVVGD--SGLIVPISDPEALANKIDEILK 325 (360)
T ss_pred E-ecCCC---hhhEecC--CceEeCCCCHHHHHHHHHHHHh
Confidence 5 33222 2222222 5678889999999999988863
No 309
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=33.45 E-value=3.5e+02 Score=28.11 Aligned_cols=68 Identities=21% Similarity=0.290 Sum_probs=46.8
Q ss_pred Cce-EEEEeCCC---CCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhc-CCcEEEe------CCCChHHHHHHH
Q 005719 69 NFD-LVISDVHM---PDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITH-GACDYLL------KPVRIEELKNIW 136 (681)
Q Consensus 69 ~pD-LVLlDV~M---PdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~-GA~DYLl------KPvs~eEL~~i~ 136 (681)
.++ +++.++.- ..+--+++++.+....++|||+-....+.+.+.++++. ||+..+. .-++.++++..+
T Consensus 166 g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~ 244 (253)
T PRK02083 166 GAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYL 244 (253)
T ss_pred CCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHH
Confidence 354 66766542 11223677888866678999999988999999999975 9988766 345556665544
No 310
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=33.40 E-value=1.4e+02 Score=30.79 Aligned_cols=69 Identities=17% Similarity=0.261 Sum_probs=50.4
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCC-CCH--HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 55 QAVTALKMLRENRNNFDLVISDVHMPD-MDG--FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 55 ~a~eALe~L~e~~~~pDLVLlDV~MPd-mDG--~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
+..++++.+.+. ..-.+|++|+.--+ +.| +++++.+....++|||+-..-.+.+.+.++.+.|++..++
T Consensus 148 ~~~~~~~~~~~~-g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 148 DLEEFAKRLEEL-GAGEIILTDIDRDGTMQGPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EHHHHHHHHHHT-T-SEEEEEETTTTTTSSS--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred CHHHHHHHHHhc-CCcEEEEeeccccCCcCCCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 456666666654 23479999997665 344 5677788655699999998888999999999999988775
No 311
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=33.12 E-value=6.1e+02 Score=26.82 Aligned_cols=58 Identities=12% Similarity=0.259 Sum_probs=41.2
Q ss_pred HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEE------EeCCCChHHHHHHHHHHHHH
Q 005719 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDY------LLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 85 ~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DY------LlKPvs~eEL~~i~q~Vlrr 142 (681)
+++++.++...++|||....-.+.+.+.+++..||+.. +.-|.-..++++-+.+.+.+
T Consensus 220 ~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~ 283 (296)
T cd04740 220 LRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDE 283 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHHH
Confidence 46777776666899999999899999999999999764 33454445555544444443
No 312
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=33.03 E-value=1.2e+02 Score=37.44 Aligned_cols=75 Identities=20% Similarity=0.323 Sum_probs=50.3
Q ss_pred CCceEEEEe-CCCCCCCHHHHH-HHHhcc-CCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 68 NNFDLVISD-VHMPDMDGFKLL-EHVGLE-MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 68 ~~pDLVLlD-V~MPdmDG~elL-e~I~~~-~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
..+.|||+| ++|-...++..| +.|..- ..+-+|+++ .+.+.+...++.-...|-.+++..++|...+..++....
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t--t~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG 196 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT--TEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG 196 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe--CChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 356788877 677666676544 444432 234455555 334456677777777888899999999999988876543
No 313
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=32.93 E-value=2.8e+02 Score=30.22 Aligned_cols=101 Identities=19% Similarity=0.200 Sum_probs=59.5
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEE-----CCHHHHHHHHHhcCCCceEEEEeCCC---C------CCC
Q 005719 18 DKFPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVT-----NQAVTALKMLRENRNNFDLVISDVHM---P------DMD 83 (681)
Q Consensus 18 ~~fP~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~a-----s~a~eALe~L~e~~~~pDLVLlDV~M---P------dmD 83 (681)
.-|..-=|||=+|-|+.+++..-+.-++.+..+.-. .-+..-.++|.+. .|||+++-=|- . +.+
T Consensus 100 ~~F~~PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~--~PDIlViTGHD~~~K~~~d~~dl~ 177 (287)
T PF05582_consen 100 EYFERPGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEY--RPDILVITGHDGYLKNKKDYSDLN 177 (287)
T ss_pred cccCCCCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHc--CCCEEEEeCchhhhcCCCChhhhh
Confidence 444443499999999999999888888877655422 2334445566654 49998874331 1 111
Q ss_pred HH----HHHHHH---h-ccCCCcEEEEEcCCChHHHHHHHhcCCc
Q 005719 84 GF----KLLEHV---G-LEMDLPVIMLSAYGDTKLVMKGITHGAC 120 (681)
Q Consensus 84 G~----elLe~I---~-~~~dlPVImLSa~~d~e~v~kAl~~GA~ 120 (681)
.+ -|++.+ + -+++.-=+++-|-......+..+++||.
T Consensus 178 ~YrnSkyFVeaV~~aR~~ep~~D~LVIfAGACQS~fEall~AGAN 222 (287)
T PF05582_consen 178 NYRNSKYFVEAVKEARKYEPNLDDLVIFAGACQSHFEALLEAGAN 222 (287)
T ss_pred hhhccHHHHHHHHHHHhcCCCcccEEEEcchhHHHHHHHHHcCcc
Confidence 11 134433 2 2333333333344556777778899995
No 314
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=32.93 E-value=2.6e+02 Score=31.18 Aligned_cols=63 Identities=24% Similarity=0.252 Sum_probs=40.2
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCeEEEECC---------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 005719 24 MRVLAVDDDPT----CLKVLENFLRACQYEVTVTNQ---------AVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEH 90 (681)
Q Consensus 24 mRVLIVDDD~~----~r~iL~~~Le~~gy~Vt~as~---------a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~ 90 (681)
-|||||-|... ..+.+.+.|+..+..+.++.. ..++.+.+++. .+|+||- .-+.+-++..|.
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~--~~D~Iia---iGGGS~iD~AK~ 106 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKEN--NCDSVIS---LGGGSPHDCAKG 106 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHc--CCCEEEE---eCCchHHHHHHH
Confidence 48999987633 344677778777776665542 34566666654 5898874 345566666665
Q ss_pred H
Q 005719 91 V 91 (681)
Q Consensus 91 I 91 (681)
+
T Consensus 107 i 107 (383)
T PRK09860 107 I 107 (383)
T ss_pred H
Confidence 4
No 315
>CHL00101 trpG anthranilate synthase component 2
Probab=32.83 E-value=55 Score=32.66 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=46.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCC--CCCCCH--HHHHHHHhccCCCcEE
Q 005719 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVH--MPDMDG--FKLLEHVGLEMDLPVI 100 (681)
Q Consensus 25 RVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~--MPdmDG--~elLe~I~~~~dlPVI 100 (681)
+|||||....+-..|.+.|++.|+.+.++......++.+.. ..||.||+--- .|..++ .++++. ....+||+
T Consensus 1 ~iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dgiiisgGpg~~~~~~~~~~i~~~--~~~~~PiL 76 (190)
T CHL00101 1 MILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKN--LNIRHIIISPGPGHPRDSGISLDVISS--YAPYIPIL 76 (190)
T ss_pred CEEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhh--CCCCEEEECCCCCChHHCcchHHHHHH--hcCCCcEE
Confidence 38999999999999999999999988887754212222221 24787775321 111111 122222 23568988
Q ss_pred EEEc
Q 005719 101 MLSA 104 (681)
Q Consensus 101 mLSa 104 (681)
-++-
T Consensus 77 GICl 80 (190)
T CHL00101 77 GVCL 80 (190)
T ss_pred EEch
Confidence 7764
No 316
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=32.67 E-value=2.8e+02 Score=31.46 Aligned_cols=92 Identities=15% Similarity=0.181 Sum_probs=52.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhc-CCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLREN-RNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIML 102 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~-~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImL 102 (681)
++|||+.-=..-+.+...+.+...++|+++....+..+.+... ......+.+|+. ..+.+.++-...++-|.++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~-----d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAA-----DVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEeccc-----ChHHHHHHHhcCCEEEEeC
Confidence 5788888855444444444444338888888776666655432 224566777663 3333333322235555555
Q ss_pred EcCCChHHHHHHHhcCCc
Q 005719 103 SAYGDTKLVMKGITHGAC 120 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~ 120 (681)
-..-....+..|++.|++
T Consensus 77 p~~~~~~i~ka~i~~gv~ 94 (389)
T COG1748 77 PPFVDLTILKACIKTGVD 94 (389)
T ss_pred CchhhHHHHHHHHHhCCC
Confidence 555566666677777764
No 317
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=32.48 E-value=3e+02 Score=30.68 Aligned_cols=95 Identities=15% Similarity=0.052 Sum_probs=41.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECC-HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQ-AVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE-MDLPVI 100 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~-a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~-~dlPVI 100 (681)
|..|.++|.++...+.+++ ..++.+....- ..+.++.+ .-..+|.||+-..-.. ....++..++.. +...+|
T Consensus 23 g~~v~vid~~~~~~~~~~~---~~~~~~~~gd~~~~~~l~~~--~~~~a~~vi~~~~~~~-~n~~~~~~~r~~~~~~~ii 96 (453)
T PRK09496 23 NNDVTVIDTDEERLRRLQD---RLDVRTVVGNGSSPDVLREA--GAEDADLLIAVTDSDE-TNMVACQIAKSLFGAPTTI 96 (453)
T ss_pred CCcEEEEECCHHHHHHHHh---hcCEEEEEeCCCCHHHHHHc--CCCcCCEEEEecCChH-HHHHHHHHHHHhcCCCeEE
Confidence 4566666666554433322 23444433211 11222222 1234777777543211 122223333433 566677
Q ss_pred EEEcCCChHHHHHH---HhcCCcEEE
Q 005719 101 MLSAYGDTKLVMKG---ITHGACDYL 123 (681)
Q Consensus 101 mLSa~~d~e~v~kA---l~~GA~DYL 123 (681)
+.+...+.....+. .+.||+..+
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~G~~~vi 122 (453)
T PRK09496 97 ARVRNPEYAEYDKLFSKEALGIDLLI 122 (453)
T ss_pred EEECCccccchhhhhhhhcCCccEEE
Confidence 76654433111222 456887544
No 318
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=32.43 E-value=3.1e+02 Score=30.89 Aligned_cols=87 Identities=16% Similarity=0.104 Sum_probs=49.9
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCC-CCCCCHH--HHHHHHhc-c-C
Q 005719 24 MRVLAVDDDPT---CLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVH-MPDMDGF--KLLEHVGL-E-M 95 (681)
Q Consensus 24 mRVLIVDDD~~---~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~-MPdmDG~--elLe~I~~-~-~ 95 (681)
.+|.+|..|.. ..+.|+.+.+..|..+..+.+..+....+... ..+|+||+|.- +...|.. +.++.+.. . +
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l-~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~ 246 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL-RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTP 246 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCC
Confidence 47878876664 34566666667787777777665555555433 34799999973 2222332 33333421 1 1
Q ss_pred CCcEEEEEcCCChHHH
Q 005719 96 DLPVIMLSAYGDTKLV 111 (681)
Q Consensus 96 dlPVImLSa~~d~e~v 111 (681)
.-.++++++....+..
T Consensus 247 ~~~lLVLsAts~~~~l 262 (374)
T PRK14722 247 VQRLLLLNATSHGDTL 262 (374)
T ss_pred CeEEEEecCccChHHH
Confidence 2237777776555443
No 319
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=32.37 E-value=4.1e+02 Score=27.80 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=35.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDV 77 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV 77 (681)
+.+|..||-++...+..++-++..+.++. ..+..+.+.... ...||+|++|.
T Consensus 110 ~~~v~~vDis~~al~~A~~N~~~~~~~~~-~~D~~~~l~~~~--~~~fDlVv~NP 161 (251)
T TIGR03704 110 GIELHAADIDPAAVRCARRNLADAGGTVH-EGDLYDALPTAL--RGRVDILAANA 161 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCEEE-Eeechhhcchhc--CCCEeEEEECC
Confidence 46899999999999988888877665443 334333332111 23599999985
No 320
>PLN02335 anthranilate synthase
Probab=32.34 E-value=54 Score=33.79 Aligned_cols=90 Identities=18% Similarity=0.163 Sum_probs=52.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH-HHHHHHHHhcCCCceEEEEeCC-C-CCCCHHHHHHHHh-ccCCCc
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQA-VTALKMLRENRNNFDLVISDVH-M-PDMDGFKLLEHVG-LEMDLP 98 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a-~eALe~L~e~~~~pDLVLlDV~-M-PdmDG~elLe~I~-~~~dlP 98 (681)
..+|||||....+-..|.+.|++.|+++.++... .++ +.+.. ..||.||+--- + |...+ ..++.++ ....+|
T Consensus 18 ~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~-~~~~~--~~~d~iVisgGPg~p~d~~-~~~~~~~~~~~~~P 93 (222)
T PLN02335 18 NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTV-EELKR--KNPRGVLISPGPGTPQDSG-ISLQTVLELGPLVP 93 (222)
T ss_pred cCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCH-HHHHh--cCCCEEEEcCCCCChhhcc-chHHHHHHhCCCCC
Confidence 4589999976667778999999999988887642 222 22222 24777776321 1 11111 1234343 234689
Q ss_pred EEEEEcCCChHHHHHHHhcCCc
Q 005719 99 VIMLSAYGDTKLVMKGITHGAC 120 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~ 120 (681)
|+-++- ....-+...|+.
T Consensus 94 iLGICl----G~QlLa~alGg~ 111 (222)
T PLN02335 94 LFGVCM----GLQCIGEAFGGK 111 (222)
T ss_pred EEEecH----HHHHHHHHhCCE
Confidence 988774 333344556653
No 321
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=32.30 E-value=3.6e+02 Score=27.75 Aligned_cols=98 Identities=19% Similarity=0.316 Sum_probs=59.7
Q ss_pred CcEEEEEeCCH----HHHHHHHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCC------CCCCCHHHHHHH
Q 005719 23 GMRVLAVDDDP----TCLKVLENFLRACQYEVTV--TNQAVTALKMLRENRNNFDLVISDVH------MPDMDGFKLLEH 90 (681)
Q Consensus 23 GmRVLIVDDD~----~~r~iL~~~Le~~gy~Vt~--as~a~eALe~L~e~~~~pDLVLlDV~------MPdmDG~elLe~ 90 (681)
|-.|+.+|--. ..+..+...++. .|.... +.+.+|++...+. .+|+|=.-+. ......|++++.
T Consensus 64 GadIIAlDaT~R~Rp~~l~~li~~i~~-~~~l~MADist~ee~~~A~~~---G~D~I~TTLsGYT~~t~~~~pD~~lv~~ 139 (192)
T PF04131_consen 64 GADIIALDATDRPRPETLEELIREIKE-KYQLVMADISTLEEAINAAEL---GFDIIGTTLSGYTPYTKGDGPDFELVRE 139 (192)
T ss_dssp T-SEEEEE-SSSS-SS-HHHHHHHHHH-CTSEEEEE-SSHHHHHHHHHT---T-SEEE-TTTTSSTTSTTSSHHHHHHHH
T ss_pred CCCEEEEecCCCCCCcCHHHHHHHHHH-hCcEEeeecCCHHHHHHHHHc---CCCEEEcccccCCCCCCCCCCCHHHHHH
Confidence 44566666322 223344444444 344443 5678888887763 4898876431 113346899999
Q ss_pred HhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 91 VGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 91 I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
+... .+|||+=.....++.+.++++.||+..++-
T Consensus 140 l~~~-~~pvIaEGri~tpe~a~~al~~GA~aVVVG 173 (192)
T PF04131_consen 140 LVQA-DVPVIAEGRIHTPEQAAKALELGAHAVVVG 173 (192)
T ss_dssp HHHT-TSEEEEESS--SHHHHHHHHHTT-SEEEE-
T ss_pred HHhC-CCcEeecCCCCCHHHHHHHHhcCCeEEEEC
Confidence 8654 899888888889999999999999998764
No 322
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=32.25 E-value=1.1e+02 Score=30.79 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=34.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVIS 75 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLl 75 (681)
|+|+|||----+...+...|++.+++++++.+..+. ..+|.||+
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~~--------~~~d~iIl 44 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDVI--------LAADKLFL 44 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHHh--------CCCCEEEE
Confidence 689999977777788888999999999999876432 13677775
No 323
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=32.14 E-value=7.1e+02 Score=28.13 Aligned_cols=102 Identities=20% Similarity=0.237 Sum_probs=60.7
Q ss_pred HHHHHHHhCCCeEEE--EC--CHHHHHHHHHhcCCCceEEEEeCCC----CCCCHHHHHHHHhccCCCcEEEEEcCCChH
Q 005719 38 VLENFLRACQYEVTV--TN--QAVTALKMLRENRNNFDLVISDVHM----PDMDGFKLLEHVGLEMDLPVIMLSAYGDTK 109 (681)
Q Consensus 38 iL~~~Le~~gy~Vt~--as--~a~eALe~L~e~~~~pDLVLlDV~M----PdmDG~elLe~I~~~~dlPVImLSa~~d~e 109 (681)
.+.+.+++.|..+.. .+ +..+.++.+.+ ...|.|.+..-- ....+++.++.++...++||++...- ..+
T Consensus 98 ~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~--~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~iPI~a~GGI-~~~ 174 (430)
T PRK07028 98 DAVRAARKYGVRLMADLINVPDPVKRAVELEE--LGVDYINVHVGIDQQMLGKDPLELLKEVSEEVSIPIAVAGGL-DAE 174 (430)
T ss_pred HHHHHHHHcCCEEEEEecCCCCHHHHHHHHHh--cCCCEEEEEeccchhhcCCChHHHHHHHHhhCCCcEEEECCC-CHH
Confidence 344455556766554 12 32333233322 247888765321 12456788888865567898877655 567
Q ss_pred HHHHHHhcCCcEE-----EeCCCChHHHHHHHHHHHHH
Q 005719 110 LVMKGITHGACDY-----LLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 110 ~v~kAl~~GA~DY-----LlKPvs~eEL~~i~q~Vlrr 142 (681)
.+.+++..||+.+ |.+.-++.+....++..+++
T Consensus 175 n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~ 212 (430)
T PRK07028 175 TAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAIDS 212 (430)
T ss_pred HHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHhc
Confidence 7888999999865 44555555555555555543
No 324
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.13 E-value=6.5e+02 Score=27.36 Aligned_cols=91 Identities=20% Similarity=0.104 Sum_probs=57.1
Q ss_pred EEEEEeCCHHHH--H--HHHHHHH----hCCC--eE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 005719 25 RVLAVDDDPTCL--K--VLENFLR----ACQY--EV-TVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL 93 (681)
Q Consensus 25 RVLIVDDD~~~r--~--iL~~~Le----~~gy--~V-t~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~ 93 (681)
.|||-|.+-... - .+.+.++ ..++ .| +.+.+..++.+.+.. .+|+|++|= |+--++-+.+..
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~---gaDiImLDn----~s~e~l~~av~~ 233 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAA---GVDTIMLDN----FSLDDLREGVEL 233 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhc---CCCEEEECC----CCHHHHHHHHHH
Confidence 478777776542 1 2444443 3342 34 468899999998863 489999993 333333333322
Q ss_pred cCCCcEEEEEcCCChHHHHHHHhcCCcEE
Q 005719 94 EMDLPVIMLSAYGDTKLVMKGITHGACDY 122 (681)
Q Consensus 94 ~~dlPVImLSa~~d~e~v~kAl~~GA~DY 122 (681)
.....+|-.++.-+.+.+.+....|+|..
T Consensus 234 ~~~~~~leaSGgI~~~ni~~yA~tGVD~I 262 (281)
T PRK06543 234 VDGRAIVEASGNVNLNTVGAIASTGVDVI 262 (281)
T ss_pred hCCCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 22334777888888888888888888654
No 325
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=32.03 E-value=1.9e+02 Score=31.46 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=49.6
Q ss_pred CcEEEEEeCCHHHH-HHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCC--CCC-----CHHHHHHHHhcc
Q 005719 23 GMRVLAVDDDPTCL-KVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHM--PDM-----DGFKLLEHVGLE 94 (681)
Q Consensus 23 GmRVLIVDDD~~~r-~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~M--Pdm-----DG~elLe~I~~~ 94 (681)
..+|.|+|..|... ..+.+.|.+.|..|+...+..-+.-+ . ..|.||+..+. .+. -|--.+..+.+.
T Consensus 141 ~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~Dsa~~~~m-~----~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~ 215 (301)
T TIGR00511 141 DIEVIATETRPRKQGHITAKELRDYGIPVTLIVDSAVRYFM-K----EVDHVVVGADAITANGALINKIGTSQLALAARE 215 (301)
T ss_pred cEEEEEecCCCcchHHHHHHHHHHCCCCEEEEehhHHHHHH-H----hCCEEEECccEEecCCCEEEHHhHHHHHHHHHH
Confidence 46788888777543 44566677778888877765444433 1 27888875543 322 244455555566
Q ss_pred CCCcEEEEEcC
Q 005719 95 MDLPVIMLSAY 105 (681)
Q Consensus 95 ~dlPVImLSa~ 105 (681)
..+||++++..
T Consensus 216 ~~vPv~V~a~~ 226 (301)
T TIGR00511 216 ARVPFMVAAET 226 (301)
T ss_pred hCCCEEEEccc
Confidence 78999988764
No 326
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=31.96 E-value=2.3e+02 Score=30.85 Aligned_cols=77 Identities=19% Similarity=0.259 Sum_probs=46.4
Q ss_pred CcEEEEEeCCHHHH---HHHHHHHHhCCCeEEE--E------CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 005719 23 GMRVLAVDDDPTCL---KVLENFLRACQYEVTV--T------NQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHV 91 (681)
Q Consensus 23 GmRVLIVDDD~~~r---~iL~~~Le~~gy~Vt~--a------s~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I 91 (681)
+-|+|||-|..... +.+...|+..+..+.. + .+..++.+.+++. .+|+||- +-+..-+++.|.+
T Consensus 22 ~~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGS~iD~aK~i 96 (351)
T cd08170 22 GKRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDN--GADVVIG---IGGGKTLDTAKAV 96 (351)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhc--CCCEEEE---ecCchhhHHHHHH
Confidence 46899998765433 3344556555555432 1 1334555666543 4788765 5667777777777
Q ss_pred hccCCCcEEEEEc
Q 005719 92 GLEMDLPVIMLSA 104 (681)
Q Consensus 92 ~~~~dlPVImLSa 104 (681)
.....+|+|.+-.
T Consensus 97 a~~~~~P~iaIPT 109 (351)
T cd08170 97 ADYLGAPVVIVPT 109 (351)
T ss_pred HHHcCCCEEEeCC
Confidence 5555788877743
No 327
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=31.90 E-value=4.4e+02 Score=26.51 Aligned_cols=53 Identities=25% Similarity=0.325 Sum_probs=36.1
Q ss_pred CHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 83 DGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 83 DG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
-|..+++.+. ..+|||+- .... ..+.+..|..+++..+-+.+++.+.+..++.
T Consensus 276 ~~~~~~Ea~~--~G~Pvi~s-~~~~---~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~ 328 (359)
T cd03808 276 LPRVLLEAMA--MGRPVIAT-DVPG---CREAVIDGVNGFLVPPGDAEALADAIERLIE 328 (359)
T ss_pred cchHHHHHHH--cCCCEEEe-cCCC---chhhhhcCcceEEECCCCHHHHHHHHHHHHh
Confidence 3556666653 46888863 3322 2334566778899999999999999888654
No 328
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=31.87 E-value=2.3e+02 Score=30.93 Aligned_cols=77 Identities=12% Similarity=0.155 Sum_probs=45.7
Q ss_pred CcEEEEEeCCHHH---HHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 005719 23 GMRVLAVDDDPTC---LKVLENFLRACQYEVTVTN---------QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEH 90 (681)
Q Consensus 23 GmRVLIVDDD~~~---r~iL~~~Le~~gy~Vt~as---------~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~ 90 (681)
+-|||||-|.... .+.+.+.|+..+..+..+. ...++.+..++ ..+|+||- .-+..-+++.|.
T Consensus 22 ~~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~d~iia---vGGGs~~D~aK~ 96 (345)
T cd08171 22 GKKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAV--QEADMIFA---VGGGKAIDTVKV 96 (345)
T ss_pred CCEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhh--cCCCEEEE---eCCcHHHHHHHH
Confidence 4689999886543 3445566666566554332 12344444443 34788875 456667777777
Q ss_pred HhccCCCcEEEEEc
Q 005719 91 VGLEMDLPVIMLSA 104 (681)
Q Consensus 91 I~~~~dlPVImLSa 104 (681)
+.....+|+|.+-.
T Consensus 97 ia~~~~~p~i~VPT 110 (345)
T cd08171 97 LADKLGKPVFTFPT 110 (345)
T ss_pred HHHHcCCCEEEecC
Confidence 75555678777643
No 329
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=31.83 E-value=1.5e+02 Score=29.29 Aligned_cols=55 Identities=15% Similarity=0.138 Sum_probs=33.6
Q ss_pred ceEEEEeCCCCCCCH-------HHHHHHHhcc-----CCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 70 FDLVISDVHMPDMDG-------FKLLEHVGLE-----MDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 70 pDLVLlDV~MPdmDG-------~elLe~I~~~-----~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
.|.|+++...|+..| .+.++.++.. +++||++.-+- ..+.+.++++.||+.++.-
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI-~~env~~~~~~gad~iivg 194 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGI-NLETIPLLAEAGADVLVAG 194 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCC-CHHHHHHHHHcCCCEEEEC
Confidence 587777665555433 3334444221 24777665544 4577888899999988654
No 330
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=31.77 E-value=3.1e+02 Score=30.67 Aligned_cols=69 Identities=22% Similarity=0.205 Sum_probs=45.6
Q ss_pred ceEEEEeCCCCCCCHHH-HHHHHhccCCCcEEEEEcC-CChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 005719 70 FDLVISDVHMPDMDGFK-LLEHVGLEMDLPVIMLSAY-GDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140 (681)
Q Consensus 70 pDLVLlDV~MPdmDG~e-lLe~I~~~~dlPVImLSa~-~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vl 140 (681)
.+.+|++..-...-=+| ++..+ .....||..... ++...+...++.|+++.+++|-+..+++.+...+-
T Consensus 89 ~~~viv~~~dW~iIPlEnlIA~~--~~~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~~~~ 159 (344)
T PRK02290 89 VDYVIVEGRDWTIIPLENLIADL--GQSGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVALIE 159 (344)
T ss_pred CCEEEEECCCCcEecHHHHHhhh--cCCceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHHHHh
Confidence 47777776543322222 33333 234445544433 45667788999999999999999999998877653
No 331
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=31.61 E-value=82 Score=33.62 Aligned_cols=54 Identities=17% Similarity=0.379 Sum_probs=40.3
Q ss_pred HHHHHHHHh-ccCCCcEEEEEcCC------ChHHHHHHHhcCCcEEEeCCCChHHHHHHHH
Q 005719 84 GFKLLEHVG-LEMDLPVIMLSAYG------DTKLVMKGITHGACDYLLKPVRIEELKNIWQ 137 (681)
Q Consensus 84 G~elLe~I~-~~~dlPVImLSa~~------d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q 137 (681)
.+++++.++ ...++|+|+|+-.. -...+.++.+.|++++|+--+..+|-.....
T Consensus 74 ~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~ 134 (259)
T PF00290_consen 74 IFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELRE 134 (259)
T ss_dssp HHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHH
T ss_pred HHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHH
Confidence 467778887 77899999999653 3446777889999999998777776654444
No 332
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=31.61 E-value=6.1e+02 Score=26.36 Aligned_cols=91 Identities=12% Similarity=0.157 Sum_probs=56.7
Q ss_pred EeCCHHHHHHHHHHHHhCCCeEEEE------CCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhccCCCcEEE
Q 005719 29 VDDDPTCLKVLENFLRACQYEVTVT------NQAVTALKMLRENRNNFDLVISDVHMPD-MDGFKLLEHVGLEMDLPVIM 101 (681)
Q Consensus 29 VDDD~~~r~iL~~~Le~~gy~Vt~a------s~a~eALe~L~e~~~~pDLVLlDV~MPd-mDG~elLe~I~~~~dlPVIm 101 (681)
..|.....++++.+ ++.+..|++- .+..+..+.+.+ ...|.|-.+...++ .--++.++.+. .++|||.
T Consensus 122 l~~p~~l~eiv~av-r~~~~pVsvKir~g~~~~~~~la~~l~~--aG~d~ihv~~~~~g~~ad~~~I~~i~--~~ipVIg 196 (233)
T cd02911 122 LKDPERLSEFIKAL-KETGVPVSVKIRAGVDVDDEELARLIEK--AGADIIHVDAMDPGNHADLKKIRDIS--TELFIIG 196 (233)
T ss_pred cCCHHHHHHHHHHH-HhcCCCEEEEEcCCcCcCHHHHHHHHHH--hCCCEEEECcCCCCCCCcHHHHHHhc--CCCEEEE
Confidence 34444444445444 4456655532 133444444543 34787766654443 22356666665 5799999
Q ss_pred EEcCCChHHHHHHHhcCCcEEEe
Q 005719 102 LSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA~DYLl 124 (681)
.-.-.+.+.+.+.+..||+...+
T Consensus 197 nGgI~s~eda~~~l~~GaD~Vmi 219 (233)
T cd02911 197 NNSVTTIESAKEMFSYGADMVSV 219 (233)
T ss_pred ECCcCCHHHHHHHHHcCCCEEEE
Confidence 88888999999999999887654
No 333
>PHA02518 ParA-like protein; Provisional
Probab=31.60 E-value=1e+02 Score=30.18 Aligned_cols=93 Identities=16% Similarity=0.024 Sum_probs=0.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQY-EVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIM 101 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy-~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVIm 101 (681)
|.|||+||-|+..-..--.-....+. .+..........+.+......||+||+|. |...+.-+...+...-.+-|++
T Consensus 29 g~~vlliD~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~d~viiD~--p~~~~~~~~~~l~~aD~viip~ 106 (211)
T PHA02518 29 GHKVLLVDLDPQGSSTDWAEAREEGEPLIPVVRMGKSIRADLPKVASGYDYVVVDG--APQDSELARAALRIADMVLIPV 106 (211)
T ss_pred CCeEEEEeCCCCCChHHHHHhcccCCCCCchhhccHHHHHHHHHHhccCCEEEEeC--CCCccHHHHHHHHHCCEEEEEe
Q ss_pred EEcCCChHHHHHHHhc
Q 005719 102 LSAYGDTKLVMKGITH 117 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~ 117 (681)
-....+.....+.++.
T Consensus 107 ~ps~~~~~~~~~~~~~ 122 (211)
T PHA02518 107 QPSPFDIWAAPDLVEL 122 (211)
T ss_pred CCChhhHHHHHHHHHH
No 334
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=31.41 E-value=3.3e+02 Score=33.66 Aligned_cols=102 Identities=16% Similarity=0.145 Sum_probs=59.3
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCC---C--HHHHHHHHh-c-
Q 005719 24 MRVLAVDDDPT---CLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDM---D--GFKLLEHVG-L- 93 (681)
Q Consensus 24 mRVLIVDDD~~---~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdm---D--G~elLe~I~-~- 93 (681)
.+|.+|.-|.. ..+.++.+.+..+..+.++.+..+..+.+... ..+|+||+|. +++ + -.+.++.+. .
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~-~~~D~VLIDT--AGRs~~d~~l~eel~~l~~~~ 292 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL-GDKHLVLIDT--VGMSQRDRNVSEQIAMLCGVG 292 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh-cCCCEEEEeC--CCCCccCHHHHHHHHHHhccC
Confidence 48888887754 23566666677787777777887776667654 3579999997 332 2 233344432 1
Q ss_pred cCCCcEEEEEcCCChHH---HHHHHhc----CCcEEEeCCCC
Q 005719 94 EMDLPVIMLSAYGDTKL---VMKGITH----GACDYLLKPVR 128 (681)
Q Consensus 94 ~~dlPVImLSa~~d~e~---v~kAl~~----GA~DYLlKPvs 128 (681)
.+.-.++++++....+. +.+.+.. +.+.+|.-=++
T Consensus 293 ~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLD 334 (767)
T PRK14723 293 RPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLD 334 (767)
T ss_pred CCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccC
Confidence 23334666666554443 3344443 45555443333
No 335
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=31.39 E-value=1.4e+02 Score=31.86 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=27.2
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 005719 24 MRVLAVDDDPT---CLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDV 77 (681)
Q Consensus 24 mRVLIVDDD~~---~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV 77 (681)
.+|.+|+-|+. ....+..+-+..+..+..+.+..+..+.+... ..+|+||+|.
T Consensus 225 ~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~~~d~vliDt 280 (282)
T TIGR03499 225 KKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-RDKDLILIDT 280 (282)
T ss_pred CeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-cCCCEEEEeC
Confidence 56666666652 22333344344455555555555444444433 2367777764
No 336
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=31.39 E-value=2.9e+02 Score=29.77 Aligned_cols=82 Identities=17% Similarity=0.327 Sum_probs=55.6
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEeC---C-C----CCCCHHHHHHHHhccCCCcEEEEEcC-CChHHHHHHHhcCCcEEE
Q 005719 53 TNQAVTALKMLRENRNNFDLVISDV---H-M----PDMDGFKLLEHVGLEMDLPVIMLSAY-GDTKLVMKGITHGACDYL 123 (681)
Q Consensus 53 as~a~eALe~L~e~~~~pDLVLlDV---~-M----PdmDG~elLe~I~~~~dlPVImLSa~-~d~e~v~kAl~~GA~DYL 123 (681)
+++..+|.+++++. .+|.+-+.+ + + |.. +++.|+.|....++|+++.-+. -+.+.+.++++.|++..=
T Consensus 152 ~t~~eea~~f~~~t--gvD~Lavs~Gt~hg~~~~~~~l-~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiN 228 (282)
T TIGR01859 152 LADPDEAEQFVKET--GVDYLAAAIGTSHGKYKGEPGL-DFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKIN 228 (282)
T ss_pred cCCHHHHHHHHHHH--CcCEEeeccCccccccCCCCcc-CHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 45788888888633 378777542 2 1 223 5899999977778999888633 356678889999998775
Q ss_pred eCCCChHHHHHHHHHHHH
Q 005719 124 LKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 124 lKPvs~eEL~~i~q~Vlr 141 (681)
+-- +|+..+...++
T Consensus 229 v~T----~l~~a~~~~~~ 242 (282)
T TIGR01859 229 IDT----DCRIAFTAAIR 242 (282)
T ss_pred ECc----HHHHHHHHHHH
Confidence 533 55555555544
No 337
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=31.31 E-value=4e+02 Score=27.03 Aligned_cols=84 Identities=17% Similarity=0.146 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeCCCCC---------CCHHHHHHHHhc--cCCCcEEEEEcCCChHHHHH---HHhcCC
Q 005719 54 NQAVTALKMLRENRNNFDLVISDVHMPD---------MDGFKLLEHVGL--EMDLPVIMLSAYGDTKLVMK---GITHGA 119 (681)
Q Consensus 54 s~a~eALe~L~e~~~~pDLVLlDV~MPd---------mDG~elLe~I~~--~~dlPVImLSa~~d~e~v~k---Al~~GA 119 (681)
.+..+.++.+.. ..+|.|++|+.-.. .+-.+++..+.. .....+++=....+.....+ ++..|+
T Consensus 8 ~~~~~~~~~a~~--~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~~l~~g~ 85 (221)
T PF03328_consen 8 ANSPKMLEKAAA--SGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLEALDAGA 85 (221)
T ss_dssp STSHHHHHHHHT--TCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHh--cCCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhhhhcccCC
Confidence 344555565543 45999999997644 222334444433 22346666666666667777 999999
Q ss_pred cEEEeCCC-ChHHHHHHHHHH
Q 005719 120 CDYLLKPV-RIEELKNIWQHV 139 (681)
Q Consensus 120 ~DYLlKPv-s~eEL~~i~q~V 139 (681)
+.+++.=+ +.++++.+++.+
T Consensus 86 ~gI~lP~ves~~~~~~~~~~~ 106 (221)
T PF03328_consen 86 DGIVLPKVESAEDARQAVAAL 106 (221)
T ss_dssp SEEEETT--SHHHHHHHHHHH
T ss_pred CeeeccccCcHHHHHHHHHHH
Confidence 98766544 567777766655
No 338
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=31.25 E-value=4.1e+02 Score=28.01 Aligned_cols=103 Identities=16% Similarity=0.213 Sum_probs=62.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTN--QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIM 101 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as--~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVIm 101 (681)
.+++||.+.+.. ..+++ ...-.|+... +..+..+.+.. .|++++-.. +.-|+.+++.+. ..+|||.
T Consensus 222 ~~l~ivG~g~~~-~~l~~---~~~~~V~~~g~~~~~~~~~~~~~----ad~~v~ps~--e~~g~~~~Eama--~G~Pvi~ 289 (351)
T cd03804 222 KRLVVIGDGPEL-DRLRA---KAGPNVTFLGRVSDEELRDLYAR----ARAFLFPAE--EDFGIVPVEAMA--SGTPVIA 289 (351)
T ss_pred CcEEEEECChhH-HHHHh---hcCCCEEEecCCCHHHHHHHHHh----CCEEEECCc--CCCCchHHHHHH--cCCCEEE
Confidence 567777766542 23333 2223455444 33445555542 577776443 444566666653 4689987
Q ss_pred EEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 102 LSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
..... ..+.+..|.++++..|-+.++|.+.+..++..
T Consensus 290 ~~~~~----~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~ 326 (351)
T cd03804 290 YGKGG----ALETVIDGVTGILFEEQTVESLAAAVERFEKN 326 (351)
T ss_pred eCCCC----CcceeeCCCCEEEeCCCCHHHHHHHHHHHHhC
Confidence 54322 22345677789999999999999999888754
No 339
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=31.13 E-value=2.3e+02 Score=29.08 Aligned_cols=71 Identities=18% Similarity=0.200 Sum_probs=50.9
Q ss_pred ECCHHHHHHHHHhcCCCce-EEEEeCCCCC---CCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 53 TNQAVTALKMLRENRNNFD-LVISDVHMPD---MDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 53 as~a~eALe~L~e~~~~pD-LVLlDV~MPd---mDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
..+..+..+.+.+. .+| ++++|+.--+ ..-+++++.+.....+||++-..-.+.+.+.+++..||+..++-
T Consensus 26 ~~d~~~~a~~~~~~--G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 26 AGDPVELAKRYNEQ--GADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSIN 100 (243)
T ss_pred CCCHHHHHHHHHHC--CCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEEC
Confidence 33666666766543 244 7888887422 12356788887667799999998899999999999998776554
No 340
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=31.08 E-value=2.8e+02 Score=29.91 Aligned_cols=77 Identities=13% Similarity=0.123 Sum_probs=47.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCe-EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH--HHHHHHHhccCCCc
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYE-VT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDG--FKLLEHVGLEMDLP 98 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~-Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG--~elLe~I~~~~dlP 98 (681)
+.+|+-||-++...+..++-++..+.. +. ...+..+.... ....||+|++|. | ..| -++++.|.....-.
T Consensus 195 ~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~---~~~~~D~Vv~dP--P-r~G~~~~~~~~l~~~~~~~ 268 (315)
T PRK03522 195 GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA---QGEVPDLVLVNP--P-RRGIGKELCDYLSQMAPRF 268 (315)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh---cCCCCeEEEECC--C-CCCccHHHHHHHHHcCCCe
Confidence 468999999999999888888776652 43 34455444321 123599999993 3 333 35566664322223
Q ss_pred EEEEEcC
Q 005719 99 VIMLSAY 105 (681)
Q Consensus 99 VImLSa~ 105 (681)
||.++..
T Consensus 269 ivyvsc~ 275 (315)
T PRK03522 269 ILYSSCN 275 (315)
T ss_pred EEEEECC
Confidence 5555543
No 341
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=31.06 E-value=2.4e+02 Score=29.03 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCC-CH--HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 56 AVTALKMLRENRNNFDLVISDVHMPDM-DG--FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 56 a~eALe~L~e~~~~pDLVLlDV~MPdm-DG--~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
..+..+.+... ..-+|++|+.--++ .| +++++.+.....+|||+-..-...+.+.++.+.||+..++
T Consensus 143 ~~~~~~~~~~~--g~~ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 143 LEEVRDFLNSF--DYGLIVLDIHSVGTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred HHHHHHHHHhc--CCEEEEEECCccccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 34444444432 23699999976543 33 7888888766789999988889999999999999998875
No 342
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=31.04 E-value=81 Score=33.27 Aligned_cols=64 Identities=28% Similarity=0.467 Sum_probs=44.8
Q ss_pred CCCCCCccCCCCccccc----hhhHHHHHHHHHHhcCCCCChhhHHhhcCCCCCcHHHHHHhhhhhHhhhcccC
Q 005719 202 HENEDSTTQKKPRVVWT----PELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFRLYLKRLS 271 (681)
Q Consensus 202 ~e~~~~s~~kk~r~~Wt----~eLh~~F~~av~~lG~~ka~Pk~il~~m~v~glt~~~v~ShLqkyr~~l~~~~ 271 (681)
.-+......+|||.+.+ .-|.+||-.+==. |+|.+ .||--+=|||..+||.-.|--|..+||+-
T Consensus 114 ~~Ngk~KK~RKPRTIYSS~QLqaL~rRFQkTQYL-----ALPER-AeLAAsLGLTQTQVKIWFQNrRSK~KKl~ 181 (245)
T KOG0850|consen 114 RPNGKGKKVRKPRTIYSSLQLQALNRRFQQTQYL-----ALPER-AELAASLGLTQTQVKIWFQNRRSKFKKLK 181 (245)
T ss_pred ccCCCcccccCCcccccHHHHHHHHHHHhhcchh-----cCcHH-HHHHHHhCCchhHhhhhhhhhHHHHHHHH
Confidence 34556677889999988 5678888654222 55554 25555669999999999997776666543
No 343
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=31.02 E-value=2.1e+02 Score=31.12 Aligned_cols=78 Identities=15% Similarity=0.217 Sum_probs=50.5
Q ss_pred CcEEEEEeCCHHHH-HHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCC--CCC-----CHHHHHHHHhcc
Q 005719 23 GMRVLAVDDDPTCL-KVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHM--PDM-----DGFKLLEHVGLE 94 (681)
Q Consensus 23 GmRVLIVDDD~~~r-~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~M--Pdm-----DG~elLe~I~~~ 94 (681)
..+|.|+|..|... ..+.+.|.+.|..|+...+..-+.-+ . .+|.||+..+. .+. -|--.+..+.+.
T Consensus 146 ~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~Dsav~~~m-~----~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~ 220 (310)
T PRK08535 146 DIEVIATETRPRNQGHITAKELAEYGIPVTLIVDSAVRYFM-K----DVDKVVVGADAITANGAVINKIGTSQIALAAHE 220 (310)
T ss_pred eEEEEEecCCchhhHHHHHHHHHHCCCCEEEEehhHHHHHH-H----hCCEEEECccEEecCCCEEeHHhHHHHHHHHHH
Confidence 46788888877642 44556677778888877775554433 1 27888876543 332 244455555666
Q ss_pred CCCcEEEEEcC
Q 005719 95 MDLPVIMLSAY 105 (681)
Q Consensus 95 ~dlPVImLSa~ 105 (681)
..+||++++..
T Consensus 221 ~~vPv~V~a~~ 231 (310)
T PRK08535 221 ARVPFMVAAET 231 (310)
T ss_pred hCCCEEEeccc
Confidence 78999988764
No 344
>PRK01581 speE spermidine synthase; Validated
Probab=30.95 E-value=2.7e+02 Score=31.52 Aligned_cols=58 Identities=24% Similarity=0.295 Sum_probs=37.9
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHH--HH---hC---CCeEEE-ECCHHHHHHHHHhcCCCceEEEEeCCCC
Q 005719 20 FPIGMRVLAVDDDPTCLKVLENF--LR---AC---QYEVTV-TNQAVTALKMLRENRNNFDLVISDVHMP 80 (681)
Q Consensus 20 fP~GmRVLIVDDD~~~r~iL~~~--Le---~~---gy~Vt~-as~a~eALe~L~e~~~~pDLVLlDV~MP 80 (681)
.|...+|.+||=|+.+.+..++. |. +. +.+|.+ +.++.+.+. .....||+||+|+--|
T Consensus 171 ~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~---~~~~~YDVIIvDl~DP 237 (374)
T PRK01581 171 YETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLS---SPSSLYDVIIIDFPDP 237 (374)
T ss_pred cCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHH---hcCCCccEEEEcCCCc
Confidence 45556899999999988888862 21 11 235543 556665554 3345699999997544
No 345
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=30.80 E-value=5.4e+02 Score=25.50 Aligned_cols=86 Identities=12% Similarity=0.018 Sum_probs=49.4
Q ss_pred HHHHHHHHHhCCCeEEEE-CCH----HHHHHHHHhcCCCceEEEEeCCCC----CCCHHHHHHHHhccCCCcEEEEEcCC
Q 005719 36 LKVLENFLRACQYEVTVT-NQA----VTALKMLRENRNNFDLVISDVHMP----DMDGFKLLEHVGLEMDLPVIMLSAYG 106 (681)
Q Consensus 36 r~iL~~~Le~~gy~Vt~a-s~a----~eALe~L~e~~~~pDLVLlDV~MP----dmDG~elLe~I~~~~dlPVImLSa~~ 106 (681)
...+.+..++.|..+... .+. .++..++. ..+|+|-+..... ...+++.++.+......+.|++.+--
T Consensus 91 ~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~---~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI 167 (206)
T TIGR03128 91 IKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKE---LGADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEARVAVAGGI 167 (206)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHH---cCCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCCcEEEECCc
Confidence 345555666677776543 232 33433332 2478887742111 11245555555433333456656666
Q ss_pred ChHHHHHHHhcCCcEEEe
Q 005719 107 DTKLVMKGITHGACDYLL 124 (681)
Q Consensus 107 d~e~v~kAl~~GA~DYLl 124 (681)
..+.+.++++.||+.++.
T Consensus 168 ~~~n~~~~~~~Ga~~v~v 185 (206)
T TIGR03128 168 NLDTIPDVIKLGPDIVIV 185 (206)
T ss_pred CHHHHHHHHHcCCCEEEE
Confidence 778888999999998765
No 346
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=30.77 E-value=1.1e+02 Score=29.50 Aligned_cols=52 Identities=21% Similarity=0.175 Sum_probs=35.2
Q ss_pred CCCcEEEEEeCCHHH---------HHHHHHHHHhCC-CeEEEECCHHHHHHHHHhcCCCceEEEE
Q 005719 21 PIGMRVLAVDDDPTC---------LKVLENFLRACQ-YEVTVTNQAVTALKMLRENRNNFDLVIS 75 (681)
Q Consensus 21 P~GmRVLIVDDD~~~---------r~iL~~~Le~~g-y~Vt~as~a~eALe~L~e~~~~pDLVLl 75 (681)
+..++|.|||.|... .+.+.+.|+... +.++. .+..+|.+.++.. .++.+|+
T Consensus 41 ~~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~~-~~~~ea~~~l~~g--~~~~~iv 102 (164)
T TIGR03061 41 LDNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHF-VSAKEAEKGLADG--KYYMVIT 102 (164)
T ss_pred cCCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceEE-cCHHHHHHHhHcC--cEEEEEE
Confidence 467899999988765 455666665533 45443 4888999998854 4666654
No 347
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=30.75 E-value=1.2e+02 Score=31.46 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=33.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHH
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTAL 60 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eAL 60 (681)
++|.|||=..-++..+.+.|++.|+++++..+..+..
T Consensus 2 ~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i~ 38 (204)
T COG0118 2 MMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEIL 38 (204)
T ss_pred CEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHHHh
Confidence 6899999999999999999999999999999887743
No 348
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=30.74 E-value=3.6e+02 Score=29.44 Aligned_cols=40 Identities=13% Similarity=0.278 Sum_probs=33.1
Q ss_pred HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 85 ~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
.++.+.|+...++|||+.....+.+.+.++++.|.+|++.
T Consensus 281 ~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~ 320 (338)
T cd04733 281 LEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIG 320 (338)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeee
Confidence 4666777777789999998888899999999999888753
No 349
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=30.69 E-value=75 Score=31.47 Aligned_cols=59 Identities=24% Similarity=0.281 Sum_probs=42.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCC
Q 005719 21 PIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82 (681)
Q Consensus 21 P~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdm 82 (681)
.+|.+|+||-....+-+-|..+|.+.+..|+.+..-.+-++..-+ ..|+|+.-+--|+.
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~---~ADIVVsa~G~~~~ 92 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITR---RADIVVSAVGKPNL 92 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHT---TSSEEEE-SSSTT-
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceee---eccEEeeeeccccc
Confidence 468899999999999999999999999999999765543433322 37999999977764
No 350
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=30.57 E-value=3.5e+02 Score=32.17 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=33.9
Q ss_pred CcEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCC
Q 005719 23 GMRVLAVDDDPTC---LKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVH 78 (681)
Q Consensus 23 GmRVLIVDDD~~~---r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~ 78 (681)
+.+|.+|+-|... ...+..+-+..++.+..+.+..+..+.+... ..+|+||+|.-
T Consensus 380 gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~~~DLVLIDTa 437 (559)
T PRK12727 380 PRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-RDYKLVLIDTA 437 (559)
T ss_pred CCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-ccCCEEEecCC
Confidence 4578888876522 2334444344566677666666666666543 35899999973
No 351
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=30.25 E-value=3.3e+02 Score=30.18 Aligned_cols=63 Identities=13% Similarity=0.246 Sum_probs=39.3
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCCeEEEECC---------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 005719 24 MRVLAVDDDPTC----LKVLENFLRACQYEVTVTNQ---------AVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEH 90 (681)
Q Consensus 24 mRVLIVDDD~~~----r~iL~~~Le~~gy~Vt~as~---------a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~ 90 (681)
-|+|||-|.... ...+++.|+..+.++.++.. ..++.+.+++. .+|+||- .-+..-+++.|.
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGS~iD~aK~ 103 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKE--GCDFIIS---IGGGSPHDCAKA 103 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhc--CCCEEEE---eCCcHHHHHHHH
Confidence 489999876543 34577778777777766643 33455555543 5898874 345555666655
Q ss_pred H
Q 005719 91 V 91 (681)
Q Consensus 91 I 91 (681)
+
T Consensus 104 i 104 (377)
T cd08176 104 I 104 (377)
T ss_pred H
Confidence 4
No 352
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=29.86 E-value=7e+02 Score=26.51 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=32.2
Q ss_pred HHHHHHHhccCCCcEEEEEcC----CChHHHHHHH-hcCCcEEEeCCCC--hHHHHHHHHHHHH
Q 005719 85 FKLLEHVGLEMDLPVIMLSAY----GDTKLVMKGI-THGACDYLLKPVR--IEELKNIWQHVIR 141 (681)
Q Consensus 85 ~elLe~I~~~~dlPVImLSa~----~d~e~v~kAl-~~GA~DYLlKPvs--~eEL~~i~q~Vlr 141 (681)
..+++.+ ...+|||++... .+.....+.+ +.| ..+++.+-+ .++|.+.+..++.
T Consensus 263 ~~~~Ea~--~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~-~g~~~~~~~~~~~~l~~~i~~ll~ 323 (357)
T PRK00726 263 STVAELA--AAGLPAILVPLPHAADDHQTANARALVDAG-AALLIPQSDLTPEKLAEKLLELLS 323 (357)
T ss_pred HHHHHHH--HhCCCEEEecCCCCCcCcHHHHHHHHHHCC-CEEEEEcccCCHHHHHHHHHHHHc
Confidence 4444544 357899887532 2222223333 445 477776655 8999999988774
No 353
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=29.70 E-value=2.6e+02 Score=32.47 Aligned_cols=102 Identities=17% Similarity=0.146 Sum_probs=60.9
Q ss_pred CCcEEEEEeCCH----HHHHHHHHHHHhC-CCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCC------CC-----CC
Q 005719 22 IGMRVLAVDDDP----TCLKVLENFLRAC-QYEVTV--TNQAVTALKMLRENRNNFDLVISDVHM------PD-----MD 83 (681)
Q Consensus 22 ~GmRVLIVDDD~----~~r~iL~~~Le~~-gy~Vt~--as~a~eALe~L~e~~~~pDLVLlDV~M------Pd-----mD 83 (681)
.|.++++||--. ...+.++++=+.+ +..|.. +.+..+|.+++. ...|.|-+-+-- .. ..
T Consensus 238 aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~---aGad~v~vgig~gsictt~~~~~~~~p 314 (479)
T PRK07807 238 AGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVE---AGADIVKVGVGPGAMCTTRMMTGVGRP 314 (479)
T ss_pred hCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHH---cCCCEEEECccCCcccccccccCCchh
Confidence 477888888332 2222333322232 223322 346677777765 347888744422 11 11
Q ss_pred HHHHHHHHh---ccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCC
Q 005719 84 GFKLLEHVG---LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126 (681)
Q Consensus 84 G~elLe~I~---~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKP 126 (681)
-+.++..+. ...++|||.-..-.....+.+|+.+||+...+--
T Consensus 315 ~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g~ 360 (479)
T PRK07807 315 QFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIGS 360 (479)
T ss_pred HHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeeccH
Confidence 244444442 2457999999998999999999999998876543
No 354
>PRK03612 spermidine synthase; Provisional
Probab=29.61 E-value=3.3e+02 Score=31.79 Aligned_cols=59 Identities=34% Similarity=0.450 Sum_probs=38.7
Q ss_pred CCCCcEEEEEeCCHHHHHHHHH--HHHhC------CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC
Q 005719 20 FPIGMRVLAVDDDPTCLKVLEN--FLRAC------QYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPD 81 (681)
Q Consensus 20 fP~GmRVLIVDDD~~~r~iL~~--~Le~~------gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPd 81 (681)
.|..-+|.+||=|+...+..++ .+... +-++. +..++.+.+ +.....||+|++|...|.
T Consensus 318 ~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l---~~~~~~fDvIi~D~~~~~ 385 (521)
T PRK03612 318 YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWL---RKLAEKFDVIIVDLPDPS 385 (521)
T ss_pred CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHH---HhCCCCCCEEEEeCCCCC
Confidence 4444699999999999998888 44321 12444 344555444 333457999999976554
No 355
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=29.59 E-value=4.7e+02 Score=27.00 Aligned_cols=67 Identities=15% Similarity=0.171 Sum_probs=42.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC--eEEE-ECCHHHHHHHHHhcCCCceEEEEeCCCCCC-CHHHHHHHH
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQY--EVTV-TNQAVTALKMLRENRNNFDLVISDVHMPDM-DGFKLLEHV 91 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy--~Vt~-as~a~eALe~L~e~~~~pDLVLlDV~MPdm-DG~elLe~I 91 (681)
.+.+|..||-++...+..++.+...+. .+.+ ..+..+..... ...||+|++...+.-. +-.++++.+
T Consensus 65 ~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~---~~~fD~V~~~~vl~~~~~~~~~l~~~ 135 (255)
T PRK11036 65 LGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL---ETPVDLILFHAVLEWVADPKSVLQTL 135 (255)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc---CCCCCEEEehhHHHhhCCHHHHHHHH
Confidence 367899999999999998888877653 3443 34444432222 2469999987544322 234555555
No 356
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=29.59 E-value=2.9e+02 Score=30.18 Aligned_cols=91 Identities=9% Similarity=-0.023 Sum_probs=55.2
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CC--CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 005719 26 VLAVDDDPTCLKVLENFLRA----CQ--YEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPV 99 (681)
Q Consensus 26 VLIVDDD~~~r~iL~~~Le~----~g--y~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPV 99 (681)
|||-|.+-...-.+.+.+++ .. .-.+.+.+..++.+.+.. .+|+|++|=.-| -++-+.+.....-..
T Consensus 182 iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~sleea~ea~~~---gaDiI~LDn~s~----e~~~~av~~~~~~~~ 254 (296)
T PRK09016 182 FLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVENLDELDQALKA---GADIIMLDNFTT----EQMREAVKRTNGRAL 254 (296)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEeCCCCh----HHHHHHHHhhcCCeE
Confidence 66666654444334444432 22 233467889999999873 489999995333 222223332222335
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEE
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYL 123 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYL 123 (681)
|..++.-+.+.+.+....|++..-
T Consensus 255 ieaSGGI~~~ni~~yA~tGVD~Is 278 (296)
T PRK09016 255 LEVSGNVTLETLREFAETGVDFIS 278 (296)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEE
Confidence 667777788888888889987543
No 357
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=29.55 E-value=2.7e+02 Score=30.23 Aligned_cols=46 Identities=11% Similarity=0.090 Sum_probs=29.3
Q ss_pred HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEE-eCCCChH
Q 005719 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYL-LKPVRIE 130 (681)
Q Consensus 85 ~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYL-lKPvs~e 130 (681)
++.++.|+....+||++--...+...+.++++.|++|++ +||....
T Consensus 229 ~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~G 275 (357)
T cd03316 229 LEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVG 275 (357)
T ss_pred HHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccC
Confidence 444445544456777665444567888888888877765 5665543
No 358
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=29.55 E-value=2.5e+02 Score=28.12 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=32.6
Q ss_pred ceEEEEeCCCCCCCH-------HHHHHHHhcc---CCC-cEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 70 FDLVISDVHMPDMDG-------FKLLEHVGLE---MDL-PVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 70 pDLVLlDV~MPdmDG-------~elLe~I~~~---~dl-PVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
.|.|+++..-|+..| ++.++.++.. ..+ ++|++..--..+.+.++.+.||+.++.-
T Consensus 132 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvg 198 (220)
T PRK05581 132 LDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAG 198 (220)
T ss_pred CCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 677777655455433 3333333221 123 4555655556678888888999877554
No 359
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=29.52 E-value=3.5e+02 Score=30.22 Aligned_cols=100 Identities=11% Similarity=0.084 Sum_probs=58.8
Q ss_pred CcEEEEEeCCHH----HHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEeC-----CCC-CCCH-----
Q 005719 23 GMRVLAVDDDPT----CLKVLENFLRACQYEVTVTN---QAVTALKMLRENRNNFDLVISDV-----HMP-DMDG----- 84 (681)
Q Consensus 23 GmRVLIVDDD~~----~r~iL~~~Le~~gy~Vt~as---~a~eALe~L~e~~~~pDLVLlDV-----~MP-dmDG----- 84 (681)
+..+++||--.- +.+.++.+=+.+.-...++. +.+.|.+++. ...|.|.+-+ +-- ..+|
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~---aGAD~ikVgiGpGSicttR~~~Gvg~pq 197 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELIL---SGADIVKVGIGPGSVCTTRTKTGVGYPQ 197 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHH---cCCCEEEEcccCCCcccCceeCCCCcCH
Confidence 366777773332 22223222222322233333 5566666664 2478887762 211 1222
Q ss_pred HHHHHHHh---ccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 85 FKLLEHVG---LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 85 ~elLe~I~---~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
+.++..+. ...++|||+-..-.....+.+|+.+||+..++-
T Consensus 198 ltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 198 LSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred HHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEEC
Confidence 33443332 234789999999999999999999999999887
No 360
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=29.49 E-value=2.1e+02 Score=31.08 Aligned_cols=69 Identities=10% Similarity=0.047 Sum_probs=45.7
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEE
Q 005719 51 TVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYL 123 (681)
Q Consensus 51 t~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYL 123 (681)
+.+.+..+|.+.+.. .+|+|++| +|.-.+--++++.++....-.+|-.++.-+.+.+.+....|++.+.
T Consensus 194 VEv~tleqa~ea~~a---gaDiI~LD-n~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is 262 (284)
T PRK06096 194 VEADTPKEAIAALRA---QPDVLQLD-KFSPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADCGIRLFI 262 (284)
T ss_pred EECCCHHHHHHHHHc---CCCEEEEC-CCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 356789999998863 48999998 4433333333443432223346777878888888888888887653
No 361
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=29.44 E-value=5.7e+02 Score=25.65 Aligned_cols=90 Identities=12% Similarity=0.148 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEE-C-------CHHHHHHHHHhcCCCceEEEEeCCC----C-CCCHHHHHHHHhccCCC
Q 005719 31 DDPTCLKVLENFLRACQYEVTVT-N-------QAVTALKMLRENRNNFDLVISDVHM----P-DMDGFKLLEHVGLEMDL 97 (681)
Q Consensus 31 DD~~~r~iL~~~Le~~gy~Vt~a-s-------~a~eALe~L~e~~~~pDLVLlDV~M----P-dmDG~elLe~I~~~~dl 97 (681)
+-....++++.+-+.++..+.+- . ...+.++.+.+ ..+|.|.+.-.. + ..-.++.++.++...++
T Consensus 107 ~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~--~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~i 184 (231)
T cd02801 107 DPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALED--AGASALTVHGRTREQRYSGPADWDYIAEIKEAVSI 184 (231)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHH--hCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCC
Confidence 33444555555545555434331 1 12233333433 246777554321 1 12346777888777889
Q ss_pred cEEEEEcCCChHHHHHHHhc-CCcEE
Q 005719 98 PVIMLSAYGDTKLVMKGITH-GACDY 122 (681)
Q Consensus 98 PVImLSa~~d~e~v~kAl~~-GA~DY 122 (681)
|||....-.+.+.+.+++.. ||+..
T Consensus 185 pvi~~Ggi~~~~d~~~~l~~~gad~V 210 (231)
T cd02801 185 PVIANGDIFSLEDALRCLEQTGVDGV 210 (231)
T ss_pred eEEEeCCCCCHHHHHHHHHhcCCCEE
Confidence 99998888889999999998 67654
No 362
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=29.26 E-value=4.7e+02 Score=27.10 Aligned_cols=69 Identities=10% Similarity=0.124 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHhcCCCc-eEEEEeCC-CCCC--CHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 54 NQAVTALKMLRENRNNF-DLVISDVH-MPDM--DGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 54 s~a~eALe~L~e~~~~p-DLVLlDV~-MPdm--DG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
.+..+..+.+.+. + .++++|+. +-.. .-+++++.+.....+||++=..-...+.+.+++..||+..++-
T Consensus 30 ~dp~~~a~~~~~~---~~~l~ivDldga~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivG 102 (228)
T PRK04128 30 GDPVEIALRFSEY---VDKIHVVDLDGAFEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIG 102 (228)
T ss_pred CCHHHHHHHHHHh---CCEEEEEECcchhcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 4666666666542 4 37778876 3222 4588899887667899998878888999999999999988764
No 363
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=29.26 E-value=2.5e+02 Score=28.08 Aligned_cols=62 Identities=13% Similarity=0.174 Sum_probs=43.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC--CCeEEEEC------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHH
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRAC--QYEVTVTN------QAVTALKMLRENRNNFDLVISDVHMPDMDGF 85 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~--gy~Vt~as------~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~ 85 (681)
.+++|.++-..+.+.+.+.+.|++. +.++..+. ...+.++.+.+ ..+|+|++-+-+|...-+
T Consensus 47 ~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~--s~~dil~VglG~PkQE~~ 116 (177)
T TIGR00696 47 EKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIAR--SGAGIVFVGLGCPKQEIW 116 (177)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHH--cCCCEEEEEcCCcHhHHH
Confidence 4689999999999999999988764 34444331 11233455554 359999999999986643
No 364
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=29.19 E-value=6.9e+02 Score=26.79 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=17.6
Q ss_pred cEEEeCCCChHHHHHHHHHHHH
Q 005719 120 CDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 120 ~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
..++.+..+.++|.+.+..++.
T Consensus 319 ~~~~~~~~~~~~l~~~i~~ll~ 340 (380)
T PRK00025 319 PELLQEEATPEKLARALLPLLA 340 (380)
T ss_pred hhhcCCCCCHHHHHHHHHHHhc
Confidence 4577788899999988888764
No 365
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=29.13 E-value=2.9e+02 Score=30.29 Aligned_cols=63 Identities=19% Similarity=0.184 Sum_probs=38.2
Q ss_pred cEEEEEeCCHHHH----HHHHHHHHhCCCeEEEECC---------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 005719 24 MRVLAVDDDPTCL----KVLENFLRACQYEVTVTNQ---------AVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEH 90 (681)
Q Consensus 24 mRVLIVDDD~~~r----~iL~~~Le~~gy~Vt~as~---------a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~ 90 (681)
-|||||-|..... ..+.+.|+..++.+.++.. ..++++.+++. .+|+||- .-+..-+++.|.
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~d~Iia---iGGGs~~D~AK~ 98 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREE--GCDGVIA---VGGGSVLDTAKA 98 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhc--CCCEEEE---eCCchHHHHHHH
Confidence 4889887765433 4677777776776665531 33455555543 4788774 345555666655
Q ss_pred H
Q 005719 91 V 91 (681)
Q Consensus 91 I 91 (681)
+
T Consensus 99 v 99 (370)
T cd08551 99 I 99 (370)
T ss_pred H
Confidence 4
No 366
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=28.96 E-value=1.3e+02 Score=29.61 Aligned_cols=75 Identities=20% Similarity=0.259 Sum_probs=44.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEe-C-CCCCCCH-HH-HHHHHhccCCCcEEE
Q 005719 26 VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISD-V-HMPDMDG-FK-LLEHVGLEMDLPVIM 101 (681)
Q Consensus 26 VLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlD-V-~MPdmDG-~e-lLe~I~~~~dlPVIm 101 (681)
|||+|.....-..+.++|++.|+++.++............ ..+|.||+- = ..+..+. ++ +++.+ ...+||+-
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~--~~~dgvil~gG~~~~~~~~~~~~i~~~~--~~~~PvlG 76 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELEL--LNPDAIVISPGPGHPEDAGISLEIIRAL--AGKVPILG 76 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhh--cCCCEEEECCCCCCcccchhHHHHHHHH--hcCCCEEE
Confidence 6899988888899999999999988877654332221111 247876662 1 1121221 22 22222 24589888
Q ss_pred EEc
Q 005719 102 LSA 104 (681)
Q Consensus 102 LSa 104 (681)
++-
T Consensus 77 IC~ 79 (184)
T cd01743 77 VCL 79 (184)
T ss_pred ECH
Confidence 864
No 367
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=28.94 E-value=2.5e+02 Score=29.46 Aligned_cols=74 Identities=7% Similarity=0.133 Sum_probs=40.1
Q ss_pred EEEEEeCCHH-HHHHHHHHHHhCCCeEEEEC-------------CHHHHHHHHHhc-CCCceEEEEeCCCCCCCHHHHHH
Q 005719 25 RVLAVDDDPT-CLKVLENFLRACQYEVTVTN-------------QAVTALKMLREN-RNNFDLVISDVHMPDMDGFKLLE 89 (681)
Q Consensus 25 RVLIVDDD~~-~r~iL~~~Le~~gy~Vt~as-------------~a~eALe~L~e~-~~~pDLVLlDV~MPdmDG~elLe 89 (681)
||-|+--... .-..++++|+..|++|+... +.....+++++. ...+|.|++- --.+-.+++++
T Consensus 122 RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifis--CTnLrt~~vi~ 199 (239)
T TIGR02990 122 RISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLS--CTALRAATCAQ 199 (239)
T ss_pred EEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEe--CCCchhHHHHH
Confidence 6777764433 34557777888888876542 223333333321 2245555543 22344566666
Q ss_pred HHhccCCCcEE
Q 005719 90 HVGLEMDLPVI 100 (681)
Q Consensus 90 ~I~~~~dlPVI 100 (681)
.+.....+|||
T Consensus 200 ~lE~~lGkPVl 210 (239)
T TIGR02990 200 RIEQAIGKPVV 210 (239)
T ss_pred HHHHHHCCCEE
Confidence 66555666664
No 368
>PLN00191 enolase
Probab=28.89 E-value=4.2e+02 Score=30.68 Aligned_cols=109 Identities=17% Similarity=0.292 Sum_probs=68.9
Q ss_pred EeCCHHHHHHHHHHHHhCCCe--EEE-----------------------------ECCHHHHHHHHHhcCCCceEEEEeC
Q 005719 29 VDDDPTCLKVLENFLRACQYE--VTV-----------------------------TNQAVTALKMLRENRNNFDLVISDV 77 (681)
Q Consensus 29 VDDD~~~r~iL~~~Le~~gy~--Vt~-----------------------------as~a~eALe~L~e~~~~pDLVLlDV 77 (681)
++++...++.|.+.++.+||+ |.. .-+..++++.++.....++++.++=
T Consensus 239 ~~~~~eal~ll~eAi~~ag~~~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I~~IED 318 (457)
T PLN00191 239 IQDNKEGLELLKEAIEKAGYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSIED 318 (457)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCCcEEEEC
Confidence 467888888899988877764 111 0266777777776445577777664
Q ss_pred CCCCCCHHHHHHHHhccCCCcEEEEEc-CCChHHHHHHHhcCCcE-EEeCCCChHHHHHHHHH
Q 005719 78 HMPDMDGFKLLEHVGLEMDLPVIMLSA-YGDTKLVMKGITHGACD-YLLKPVRIEELKNIWQH 138 (681)
Q Consensus 78 ~MPdmDG~elLe~I~~~~dlPVImLSa-~~d~e~v~kAl~~GA~D-YLlKPvs~eEL~~i~q~ 138 (681)
=++. +.++-.++|+....+||+.==. ..+...+.++++.++++ +++|+-...-|.+.++.
T Consensus 319 Pl~~-~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~ 380 (457)
T PLN00191 319 PFDQ-DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEA 380 (457)
T ss_pred CCCc-ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHH
Confidence 3433 3455566665555666543111 14477888889888765 57888776666655553
No 369
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=28.78 E-value=4.9e+02 Score=25.66 Aligned_cols=53 Identities=19% Similarity=0.262 Sum_probs=36.1
Q ss_pred CHHHHHHHHhccCCCcE-E-EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHH
Q 005719 83 DGFKLLEHVGLEMDLPV-I-MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIW 136 (681)
Q Consensus 83 DG~elLe~I~~~~dlPV-I-mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~ 136 (681)
-+++.++.|+.....|+ + +|+. +....+..+.+.||+..++.....++....+
T Consensus 43 ~~~~~v~~i~~~~~~~v~v~lm~~-~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~ 97 (210)
T TIGR01163 43 FGPPVLEALRKYTDLPIDVHLMVE-NPDRYIEDFAEAGADIITVHPEASEHIHRLL 97 (210)
T ss_pred cCHHHHHHHHhcCCCcEEEEeeeC-CHHHHHHHHHHcCCCEEEEccCCchhHHHHH
Confidence 57888999976566775 3 4443 4556788888999998777665445554444
No 370
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=28.70 E-value=3.2e+02 Score=29.57 Aligned_cols=77 Identities=16% Similarity=0.089 Sum_probs=48.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC-eEEEEC-----CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQY-EVTVTN-----QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMD 96 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy-~Vt~as-----~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~d 96 (681)
+-|+|||-|... ...+.+.|+..+. .+..+. +..+..+.+...+ .+|+||- .-+..-+++.+.+.....
T Consensus 25 ~~r~livtd~~~-~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~d~iIa---iGGGsv~D~aK~vA~~~~ 99 (331)
T cd08174 25 FGRVAVVSGPGV-GEQVAESLKTSFSAEVEAVEEVSNSDAEEIGARARSIP-NVDAVVG---IGGGKVIDVAKYAAFLRG 99 (331)
T ss_pred CCceEEEECCcH-HHHHHHHHHhccCceEEEecCCCccCHHHHHHHHHhcc-CCCEEEE---eCCcHHHHHHHHHHhhcC
Confidence 358898887665 5567777766544 333332 4455556665443 5788774 456667777777766677
Q ss_pred CcEEEEEc
Q 005719 97 LPVIMLSA 104 (681)
Q Consensus 97 lPVImLSa 104 (681)
+|+|.+-.
T Consensus 100 ~p~i~vPT 107 (331)
T cd08174 100 IPLSVPTT 107 (331)
T ss_pred CCEEEecC
Confidence 88877743
No 371
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=28.67 E-value=5.6e+02 Score=26.55 Aligned_cols=65 Identities=14% Similarity=0.081 Sum_probs=40.0
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 70 FDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 70 pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
.|++++--.. +.-|+.++|.+. ..+|||+-. ..... +.+.. ...|+..+-+.+++.+.+..++..
T Consensus 267 adi~v~ps~~-E~~~~~~lEAma--~G~PvI~s~-~~~~~---~~i~~-~~~~~~~~~~~~~~a~~i~~l~~~ 331 (358)
T cd03812 267 MDVFLFPSLY-EGLPLVLIEAQA--SGLPCILSD-TITKE---VDLTD-LVKFLSLDESPEIWAEEILKLKSE 331 (358)
T ss_pred cCEEEecccc-cCCCHHHHHHHH--hCCCEEEEc-CCchh---hhhcc-CccEEeCCCCHHHHHHHHHHHHhC
Confidence 4666653322 334666776653 568998643 33322 22444 456787777889999999888753
No 372
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=28.65 E-value=6e+02 Score=25.36 Aligned_cols=64 Identities=16% Similarity=0.080 Sum_probs=39.6
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 005719 70 FDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140 (681)
Q Consensus 70 pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vl 140 (681)
.|++++-... +.-|..+++.+. ..+|||.. ... ...+.+..|...|+.++-+.+++...++.+.
T Consensus 264 ~d~~i~ps~~-e~~~~~~~Ea~~--~G~PvI~~-~~~---~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~ 327 (353)
T cd03811 264 ADLFVLSSRY-EGFPNVLLEAMA--LGTPVVAT-DCP---GPREILEDGENGLLVPVGDEAALAAAALALL 327 (353)
T ss_pred CCEEEeCccc-CCCCcHHHHHHH--hCCCEEEc-CCC---ChHHHhcCCCceEEECCCCHHHHHHHHHHHH
Confidence 3555543222 233555666553 56888753 222 3345577888999999999999876666554
No 373
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=28.63 E-value=4.2e+02 Score=27.04 Aligned_cols=101 Identities=16% Similarity=0.152 Sum_probs=58.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECC------HHHHHHHHHhcCCCceEE-EEeCCCCCCCHHHHHHHH----h
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQ------AVTALKMLRENRNNFDLV-ISDVHMPDMDGFKLLEHV----G 92 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~------a~eALe~L~e~~~~pDLV-LlDV~MPdmDG~elLe~I----~ 92 (681)
|||||-=..+ ....+.+.|++.|+++..+.. ...+++.+. ..+|.| ++.. +|.+.+... +
T Consensus 1 m~VLvTRp~~-~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l~---~~~d~iifTS~-----naV~~~~~~~~~~~ 71 (240)
T PRK09189 1 MRVLVTRPEP-AAERTAARLRAMGHEPVLLPLSRPVHDVAAAFTALS---EPHGAIAVTSA-----EAVRHLAALGERLL 71 (240)
T ss_pred CeEEEECCCC-chHHHHHHHHHCCCceEEecccccccChhhhhhhhc---CCcCEEEEECH-----HHHHHHHhcchhhH
Confidence 5676654433 456677888888998887631 122222222 235654 4443 466665432 2
Q ss_pred ccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHH
Q 005719 93 LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQ 137 (681)
Q Consensus 93 ~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q 137 (681)
...+++++.+.. .....+.+.|..+++.+..+.+.|.+.+.
T Consensus 72 ~~~~~~~~aVG~----~Ta~~l~~~G~~~~~~~~~~~e~L~~~~~ 112 (240)
T PRK09189 72 PHLALPLFAVGE----ATAEAARELGFRHVIEGGGDGVRLAETVA 112 (240)
T ss_pred HhcCCeEEEEcH----HHHHHHHHcCCCCCcCCCCCHHHHHHHHH
Confidence 223567776643 34444556888778777788888877654
No 374
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=28.38 E-value=1.1e+02 Score=30.84 Aligned_cols=74 Identities=23% Similarity=0.281 Sum_probs=43.1
Q ss_pred EEEEEeCC---------HHHHHHHHHHHH-hCCCeEEEECCHHHHH-HHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHh
Q 005719 25 RVLAVDDD---------PTCLKVLENFLR-ACQYEVTVTNQAVTAL-KMLRENRNNFDLVISDVHMPD-MDGFKLLEHVG 92 (681)
Q Consensus 25 RVLIVDDD---------~~~r~iL~~~Le-~~gy~Vt~as~a~eAL-e~L~e~~~~pDLVLlDV~MPd-mDG~elLe~I~ 92 (681)
||||+... +.....|..+|+ ..+++|++..+....- +.| ..+|+||+.....+ ++. +..+.|.
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L----~~~Dvvv~~~~~~~~l~~-~~~~al~ 75 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENL----KGYDVVVFYNTGGDELTD-EQRAALR 75 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCH----CT-SEEEEE-SSCCGS-H-HHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHh----cCCCEEEEECCCCCcCCH-HHHHHHH
Confidence 68888666 257778889998 6789999887733221 122 35999999887753 332 2222221
Q ss_pred --ccCCCcEEEEE
Q 005719 93 --LEMDLPVIMLS 103 (681)
Q Consensus 93 --~~~dlPVImLS 103 (681)
.+...++|++=
T Consensus 76 ~~v~~Ggglv~lH 88 (217)
T PF06283_consen 76 DYVENGGGLVGLH 88 (217)
T ss_dssp HHHHTT-EEEEEG
T ss_pred HHHHcCCCEEEEc
Confidence 23557787774
No 375
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=28.36 E-value=77 Score=32.01 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEE
Q 005719 57 VTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDY 122 (681)
Q Consensus 57 ~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DY 122 (681)
..+++.++.. .||.|=+ ||+ --.++++.++...++|||.=.--.+.+.+.+++++||...
T Consensus 107 ~~~~~~i~~~--~PD~vEi---lPg-~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aV 166 (175)
T PF04309_consen 107 ETGIKQIEQS--KPDAVEI---LPG-VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAV 166 (175)
T ss_dssp HHHHHHHHHH--T-SEEEE---ESC-CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEE
T ss_pred HHHHHHHhhc--CCCEEEE---chH-HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEE
Confidence 4556666654 4898766 787 4557777777777899887666678899999999999865
No 376
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=28.30 E-value=1.8e+02 Score=35.54 Aligned_cols=93 Identities=16% Similarity=0.181 Sum_probs=54.7
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhC---CCeEEEECCH---HHHHHHHHhcCCCceEEEEeCC--CCCC-CHHHHHHH
Q 005719 20 FPIGMRVLAVDDDPTCLKVLENFLRAC---QYEVTVTNQA---VTALKMLRENRNNFDLVISDVH--MPDM-DGFKLLEH 90 (681)
Q Consensus 20 fP~GmRVLIVDDD~~~r~iL~~~Le~~---gy~Vt~as~a---~eALe~L~e~~~~pDLVLlDV~--MPdm-DG~elLe~ 90 (681)
++..+||||||....+-..|..+|+++ ++.|+++... .+.+..+ ..||.||+--- -|.- .-+.+++.
T Consensus 2 ~~~~~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l----~~~D~VVIspGPG~p~~~~~~~i~~~ 77 (742)
T TIGR01823 2 QQQRLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELL----PLFDAIVVGPGPGNPNNAQDMGIISE 77 (742)
T ss_pred CCCCceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhh----cCCCEEEECCCCCCccchhhhHHHHH
Confidence 567789999999988888888888875 3556655432 2222222 24888887321 1211 22445555
Q ss_pred Hhc---cCCCcEEEEEcCCChHHHHHHHhcCCc
Q 005719 91 VGL---EMDLPVIMLSAYGDTKLVMKGITHGAC 120 (681)
Q Consensus 91 I~~---~~dlPVImLSa~~d~e~v~kAl~~GA~ 120 (681)
+.. ...+||+-++-- ...-+...|+.
T Consensus 78 i~~~~~~~~iPvLGIClG----~QlLa~a~GG~ 106 (742)
T TIGR01823 78 LWELANLDEVPVLGICLG----FQSLCLAQGAD 106 (742)
T ss_pred HHHhcccCCCcEEEEchh----hHHHHhhcCCE
Confidence 532 236999988743 23334455654
No 377
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.19 E-value=1.6e+02 Score=32.07 Aligned_cols=62 Identities=21% Similarity=0.215 Sum_probs=48.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFK 86 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~e 86 (681)
.|.+|+||.....+..-+..+|...+..|+++..-..-+...-. ..|+|+.-+.-|+.-.-+
T Consensus 156 ~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~~~~---~ADIvV~AvG~p~~i~~~ 217 (285)
T PRK14191 156 KGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQ---NADIVCVGVGKPDLIKAS 217 (285)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH---hCCEEEEecCCCCcCCHH
Confidence 58899999999999999999998889999998865555543322 379999999877754433
No 378
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=28.11 E-value=2.9e+02 Score=28.99 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=43.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHhccCCC
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQY----EVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF-KLLEHVGLEMDL 97 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy----~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~-elLe~I~~~~dl 97 (681)
|=|++.|-+++..+....+.|...+. ++.+.....+++..+. .+|.+++|... .|-. ++++.++..+.-
T Consensus 69 gGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~----~iDF~vVDc~~--~d~~~~vl~~~~~~~~G 142 (218)
T PF07279_consen 69 GGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLK----GIDFVVVDCKR--EDFAARVLRAAKLSPRG 142 (218)
T ss_pred CCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhcc----CCCEEEEeCCc--hhHHHHHHHHhccCCCc
Confidence 34666666666666677777765553 2233334556665553 48999999984 3455 677766544444
Q ss_pred cEEE
Q 005719 98 PVIM 101 (681)
Q Consensus 98 PVIm 101 (681)
.||+
T Consensus 143 aVVV 146 (218)
T PF07279_consen 143 AVVV 146 (218)
T ss_pred eEEE
Confidence 4444
No 379
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=28.03 E-value=5.4e+02 Score=27.74 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=56.6
Q ss_pred EeCCHHHHHHHHHHHHhCCCeEEEEC------C---HHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHhcc
Q 005719 29 VDDDPTCLKVLENFLRACQYEVTVTN------Q---AVTALKMLRENRNNFDLVISDVHMP-----DMDGFKLLEHVGLE 94 (681)
Q Consensus 29 VDDD~~~r~iL~~~Le~~gy~Vt~as------~---a~eALe~L~e~~~~pDLVLlDV~MP-----dmDG~elLe~I~~~ 94 (681)
..+-....++++.+-+.+++.|.+-- . ..+..+.+.+ ...|.|.+.-..+ +.--++.++.|+..
T Consensus 113 ~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~--~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~ 190 (319)
T TIGR00737 113 LRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAED--AGAQAVTLHGRTRAQGYSGEANWDIIARVKQA 190 (319)
T ss_pred hCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHH--hCCCEEEEEcccccccCCCchhHHHHHHHHHc
Confidence 34445555555555555566554321 1 2233334443 2467776643222 11236777777766
Q ss_pred CCCcEEEEEcCCChHHHHHHH-hcCCcEEEe
Q 005719 95 MDLPVIMLSAYGDTKLVMKGI-THGACDYLL 124 (681)
Q Consensus 95 ~dlPVImLSa~~d~e~v~kAl-~~GA~DYLl 124 (681)
.++|||....-.+.+.+.+++ ..||+.+.+
T Consensus 191 ~~ipvi~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 191 VRIPVIGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred CCCcEEEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 779999999989999999999 467877654
No 380
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=27.98 E-value=5.9e+02 Score=29.28 Aligned_cols=55 Identities=22% Similarity=0.225 Sum_probs=30.7
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhCCCeEEEEC---CHHH-HHHHHHhcCCCceEEEEeCC
Q 005719 23 GMRVLAVDDDPT---CLKVLENFLRACQYEVTVTN---QAVT-ALKMLRENRNNFDLVISDVH 78 (681)
Q Consensus 23 GmRVLIVDDD~~---~r~iL~~~Le~~gy~Vt~as---~a~e-ALe~L~e~~~~pDLVLlDV~ 78 (681)
|.+|++|+.|.. ..+.++.+.+..+..+.... +..+ +.+.+.... .+|+||+|.-
T Consensus 123 g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~-~~DvVIIDTA 184 (437)
T PRK00771 123 GLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFK-KADVIIVDTA 184 (437)
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhh-cCCEEEEECC
Confidence 678998887753 23345555566666665432 2222 222333222 3599999974
No 381
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=27.93 E-value=2e+02 Score=31.73 Aligned_cols=63 Identities=25% Similarity=0.474 Sum_probs=45.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHh--CCC---eEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH
Q 005719 25 RVLAVDDDPTCLKVLENFLRA--CQY---EVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLE 89 (681)
Q Consensus 25 RVLIVDDD~~~r~iL~~~Le~--~gy---~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe 89 (681)
.|+++|-|..+.+.=+.++.. +|| +|. ...++...++.+.+ +.+|+||+|..-|.+.+-.+.+
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~--~~~dVii~dssdpvgpa~~lf~ 215 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKE--NPFDVIITDSSDPVGPACALFQ 215 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhcc--CCceEEEEecCCccchHHHHHH
Confidence 478888888888887777764 455 343 34477777776653 4599999999999998876544
No 382
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=27.93 E-value=7.8e+02 Score=27.64 Aligned_cols=67 Identities=19% Similarity=0.249 Sum_probs=43.8
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCC-------CCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 55 QAVTALKMLRENRNNFDLVISDVHM-------PDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 55 ~a~eALe~L~e~~~~pDLVLlDV~M-------PdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
+..+..+.+.+ ...|+|.++... +..+...+.+.++. .++|||+ ..-...+.+.++++.||+..++-
T Consensus 142 ~~~e~a~~l~e--aGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-~~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG 215 (368)
T PRK08649 142 RAQELAPTVVE--AGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-LDVPVIV-GGCVTYTTALHLMRTGAAGVLVG 215 (368)
T ss_pred CHHHHHHHHHH--CCCCEEEEeccchhhhccCCcCCHHHHHHHHHH-CCCCEEE-eCCCCHHHHHHHHHcCCCEEEEC
Confidence 34555555554 358999996532 22245555555543 5789887 55567788889999999988553
No 383
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=27.88 E-value=1.4e+02 Score=36.33 Aligned_cols=79 Identities=28% Similarity=0.359 Sum_probs=49.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeC--CCCC-CCHHHHHHHHhccCCCc
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDV--HMPD-MDGFKLLEHVGLEMDLP 98 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV--~MPd-mDG~elLe~I~~~~dlP 98 (681)
.+.||+|||-.......+..+|++.|+++.++.... ..+.+.. ..+|.||+-- .-|. .+-.++++.+ ...++|
T Consensus 515 ~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~-~~~~~~~--~~~DgLILsgGPGsp~d~~~~~~I~~~-~~~~iP 590 (717)
T TIGR01815 515 EGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSH-AEAAFDE--RRPDLVVLSPGPGRPADFDVAGTIDAA-LARGLP 590 (717)
T ss_pred CCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCC-Chhhhhh--cCCCEEEEcCCCCCchhcccHHHHHHH-HHCCCC
Confidence 578999999888888899999999999988775432 1122221 2488877721 1111 1123344433 235789
Q ss_pred EEEEEc
Q 005719 99 VIMLSA 104 (681)
Q Consensus 99 VImLSa 104 (681)
|+-++-
T Consensus 591 vLGICL 596 (717)
T TIGR01815 591 VFGVCL 596 (717)
T ss_pred EEEECH
Confidence 988864
No 384
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=27.86 E-value=5e+02 Score=27.35 Aligned_cols=113 Identities=19% Similarity=0.291 Sum_probs=71.9
Q ss_pred CcEEEEEeCCHHHHH--HHHHHHHhCCC--eE--EEECCHHHHHHHHHhcCCCceEEEEeC-------CCCCCCHHHHHH
Q 005719 23 GMRVLAVDDDPTCLK--VLENFLRACQY--EV--TVTNQAVTALKMLRENRNNFDLVISDV-------HMPDMDGFKLLE 89 (681)
Q Consensus 23 GmRVLIVDDD~~~r~--iL~~~Le~~gy--~V--t~as~a~eALe~L~e~~~~pDLVLlDV-------~MPdmDG~elLe 89 (681)
|.-|+.+|--...|- .+.+++.+..| .+ .-+++.+|++...+ ..+|+|=.-+ .-|...-|++++
T Consensus 98 Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~---~G~D~IGTTLsGYT~~~~~~~~pDf~lvk 174 (229)
T COG3010 98 GADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHK---LGFDIIGTTLSGYTGYTEKPTEPDFQLVK 174 (229)
T ss_pred CCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHH---cCCcEEecccccccCCCCCCCCCcHHHHH
Confidence 556777764322221 23444433222 22 23567778877765 4588875432 234556689999
Q ss_pred HHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCC--CChHHHHHHHHHH
Q 005719 90 HVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP--VRIEELKNIWQHV 139 (681)
Q Consensus 90 ~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKP--vs~eEL~~i~q~V 139 (681)
.+.. .+++||.=.....++.+.++++.||+...+-- -+++++......+
T Consensus 175 ~l~~-~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITRp~~It~~F~~~ 225 (229)
T COG3010 175 QLSD-AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITRPEEITQWFVDA 225 (229)
T ss_pred HHHh-CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCCHHHHHHHHHHH
Confidence 8854 78999999999999999999999999987764 2345555444433
No 385
>PRK00077 eno enolase; Provisional
Probab=27.77 E-value=4e+02 Score=30.31 Aligned_cols=108 Identities=16% Similarity=0.296 Sum_probs=62.8
Q ss_pred EeCCHHHHHHHHHHHHhCCCe----EEEECCH--------------------HHHHHHHHhcCCCceEEEEeCCCCCCCH
Q 005719 29 VDDDPTCLKVLENFLRACQYE----VTVTNQA--------------------VTALKMLRENRNNFDLVISDVHMPDMDG 84 (681)
Q Consensus 29 VDDD~~~r~iL~~~Le~~gy~----Vt~as~a--------------------~eALe~L~e~~~~pDLVLlDV~MPdmDG 84 (681)
++++....+.+++.++..||+ |...-++ .++.+.+...-..++++.++==++..|
T Consensus 212 ~~~~~e~l~~lreAi~~ag~~~G~di~l~lD~aas~~~~~~~y~~~~~~~s~~e~~~~~~~l~e~y~i~~iEdPl~~~D- 290 (425)
T PRK00077 212 LKSNEEALDLILEAIEKAGYKPGEDIALALDCAASEFYKDGKYVLEGEGLTSEEMIDYLAELVDKYPIVSIEDGLDEND- 290 (425)
T ss_pred ccchHHHHHHHHHHHHHhcCCCCCceEEEEehhhhhcccCCeeeccCCcCCHHHHHHHHHHHHhhCCcEEEEcCCCCcc-
Confidence 366777788888888877664 3333333 345555443333477777664343332
Q ss_pred HHHHHHHhccC--CCcEEEEEcC---CChHHHHHHHhcCCcE-EEeCCCChHHHHHHHHHH
Q 005719 85 FKLLEHVGLEM--DLPVIMLSAY---GDTKLVMKGITHGACD-YLLKPVRIEELKNIWQHV 139 (681)
Q Consensus 85 ~elLe~I~~~~--dlPVImLSa~---~d~e~v~kAl~~GA~D-YLlKPvs~eEL~~i~q~V 139 (681)
++-.+.|+... .+|| +..+ .+...+.++++.++++ +++||-...-|...++.+
T Consensus 291 ~~g~~~L~~~~~~~ipI--~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGitea~~ia 349 (425)
T PRK00077 291 WEGWKLLTEKLGDKVQL--VGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLDAI 349 (425)
T ss_pred HHHHHHHHHhcCCCCeE--EcCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHH
Confidence 44445554333 3554 3333 2477888888887765 578887766666555543
No 386
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=27.75 E-value=3.5e+02 Score=29.77 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=31.7
Q ss_pred HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEE
Q 005719 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYL 123 (681)
Q Consensus 85 ~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYL 123 (681)
.++.+.++....+|||..-...+.+.+.++++.|.+|++
T Consensus 265 ~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V 303 (353)
T cd02930 265 AWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMV 303 (353)
T ss_pred HHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChh
Confidence 455677777778999988787889999999999987764
No 387
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=27.65 E-value=3e+02 Score=29.51 Aligned_cols=81 Identities=20% Similarity=0.228 Sum_probs=50.2
Q ss_pred hCCCeEEEECCHH-----HHH---H-HHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHH
Q 005719 45 ACQYEVTVTNQAV-----TAL---K-MLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGI 115 (681)
Q Consensus 45 ~~gy~Vt~as~a~-----eAL---e-~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl 115 (681)
+.+..|.++.++. ++- . ++.+. .||+||+=-=-|..-|-.-.+.+-...++|.|+++........ .++
T Consensus 29 RedI~vrv~gsGaKm~pe~~~~~~~~~~~~~--~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~-d~l 105 (277)
T PRK00994 29 REDIDVRVVGSGAKMGPEEVEEVVKKMLEEW--KPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVK-DAM 105 (277)
T ss_pred ccCceEEEeccCCCCCHHHHHHHHHHHHHhh--CCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccchH-HHH
Confidence 4477888877542 222 2 22332 5888877443444556666666655678999999977655544 667
Q ss_pred hcCCcEEEeCCCC
Q 005719 116 THGACDYLLKPVR 128 (681)
Q Consensus 116 ~~GA~DYLlKPvs 128 (681)
+..-.+||+-+.+
T Consensus 106 ~~~g~GYIivk~D 118 (277)
T PRK00994 106 EEQGLGYIIVKAD 118 (277)
T ss_pred HhcCCcEEEEecC
Confidence 6666677666544
No 388
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=27.56 E-value=3.7e+02 Score=30.85 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=30.8
Q ss_pred CcEEEEEeCCHHHH---HHHHHHHHhCCCeEEEEC---CH----HHHHHHHHhcCCCceEEEEeCC
Q 005719 23 GMRVLAVDDDPTCL---KVLENFLRACQYEVTVTN---QA----VTALKMLRENRNNFDLVISDVH 78 (681)
Q Consensus 23 GmRVLIVDDD~~~r---~iL~~~Le~~gy~Vt~as---~a----~eALe~L~e~~~~pDLVLlDV~ 78 (681)
|.+|+||+-|+.-. ..|+.+-+..+..+.... +. .++++.++. ..+|+||+|.-
T Consensus 128 G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~--~~~DvViIDTa 191 (429)
T TIGR01425 128 GFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKK--ENFDIIIVDTS 191 (429)
T ss_pred CCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHh--CCCCEEEEECC
Confidence 67899998886432 233333344455544433 21 235555543 35899999984
No 389
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=27.51 E-value=2.1e+02 Score=32.33 Aligned_cols=54 Identities=19% Similarity=0.397 Sum_probs=40.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe---EE-EECCHHHHHHHHHhcCCCceEEEEeC
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYE---VT-VTNQAVTALKMLRENRNNFDLVISDV 77 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~---Vt-~as~a~eALe~L~e~~~~pDLVLlDV 77 (681)
-+|..||-++...+..++-++..++. +. ...+..+.+..+......||+||+|.
T Consensus 244 ~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDP 301 (396)
T PRK15128 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECC
Confidence 48999999999999999988877653 33 45677777665543334699999995
No 390
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=27.33 E-value=4.4e+02 Score=26.78 Aligned_cols=77 Identities=16% Similarity=0.156 Sum_probs=47.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-eEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH--HHHHHHHhcc---CC
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQY-EVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDG--FKLLEHVGLE---MD 96 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy-~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG--~elLe~I~~~---~d 96 (681)
.+|..||-++...+.+++-++..+. .+. ...+..+.+. .....||+|++|. |-..| -++++.|... ..
T Consensus 77 ~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~---~~~~~fDlV~~DP--Py~~g~~~~~l~~l~~~~~l~~ 151 (199)
T PRK10909 77 AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLA---QPGTPHNVVFVDP--PFRKGLLEETINLLEDNGWLAD 151 (199)
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHh---hcCCCceEEEECC--CCCCChHHHHHHHHHHCCCcCC
Confidence 4899999999999999998887664 243 3344444432 2223599999996 43334 3455666432 22
Q ss_pred CcEEEEEcC
Q 005719 97 LPVIMLSAY 105 (681)
Q Consensus 97 lPVImLSa~ 105 (681)
-.||++...
T Consensus 152 ~~iv~ve~~ 160 (199)
T PRK10909 152 EALIYVESE 160 (199)
T ss_pred CcEEEEEec
Confidence 336665543
No 391
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=27.29 E-value=1.6e+02 Score=29.19 Aligned_cols=72 Identities=18% Similarity=0.217 Sum_probs=40.8
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHh--ccCCCcEEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 53 TNQAVTALKMLRENRNNFDLVISDVHMPDMDGF-KLLEHVG--LEMDLPVIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 53 as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~-elLe~I~--~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
+-+..+.++....-+..+|+||+|.=--..+=+ ++.+.++ .....+||+.|.......+.+.+..-.++|.+
T Consensus 70 fyD~~~p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~~~~~~~~ll~~~~~~f~p 144 (162)
T PF10237_consen 70 FYDYNEPEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEEMEELIKKLLGLRMCDFQP 144 (162)
T ss_pred ECCCCChhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHHHHHHHHHHhCeeEEeEEe
Confidence 444444444443334579999999622111111 1222232 22367899999988888888877555555543
No 392
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=27.16 E-value=6.9e+02 Score=28.14 Aligned_cols=107 Identities=13% Similarity=0.157 Sum_probs=56.2
Q ss_pred cEEEEEeCC-HHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005719 24 MRVLAVDDD-PTCLKVLENFLRACQYEVTVTN--QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVI 100 (681)
Q Consensus 24 mRVLIVDDD-~~~r~iL~~~Le~~gy~Vt~as--~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVI 100 (681)
++++|+.+- +...+.++++.++.+..+.... +..++...+. ..|++++-- .-+.-|+..++.+. ..+|+|
T Consensus 321 ~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~----~aDv~l~pS-~~E~~gl~~lEAma--~G~pvI 393 (473)
T TIGR02095 321 GQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYA----GADFILMPS-RFEPCGLTQLYAMR--YGTVPI 393 (473)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHH----hCCEEEeCC-CcCCcHHHHHHHHH--CCCCeE
Confidence 455555443 2334444444444333333222 2222222222 246666532 12334555555543 456776
Q ss_pred EEEcCCChHHHHHHHhcC------CcEEEeCCCChHHHHHHHHHHHH
Q 005719 101 MLSAYGDTKLVMKGITHG------ACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~G------A~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
+- .... ..+.+..| ..+|+..|.+.++|...+..++.
T Consensus 394 ~s-~~gg---~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~ 436 (473)
T TIGR02095 394 VR-RTGG---LADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALR 436 (473)
T ss_pred Ec-cCCC---ccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 53 3222 12234444 78999999999999999988875
No 393
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=27.12 E-value=1.4e+02 Score=27.28 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=12.2
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEE
Q 005719 30 DDDPTCLKVLENFLRACQYEVTV 52 (681)
Q Consensus 30 DDD~~~r~iL~~~Le~~gy~Vt~ 52 (681)
|.+......+.+.|...||.+..
T Consensus 8 d~~K~~~~~~a~~l~~~G~~i~A 30 (112)
T cd00532 8 DHVKAMLVDLAPKLSSDGFPLFA 30 (112)
T ss_pred cccHHHHHHHHHHHHHCCCEEEE
Confidence 33444444555555566776653
No 394
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=27.00 E-value=2.2e+02 Score=32.57 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=40.8
Q ss_pred CCceEEEEeCCCCC-CCHHHHHHHHhcc-CCCcEEEEEcCCChHHHHHHHhcCCcEEE
Q 005719 68 NNFDLVISDVHMPD-MDGFKLLEHVGLE-MDLPVIMLSAYGDTKLVMKGITHGACDYL 123 (681)
Q Consensus 68 ~~pDLVLlDV~MPd-mDG~elLe~I~~~-~dlPVImLSa~~d~e~v~kAl~~GA~DYL 123 (681)
..+|+|.+|..-.. ....+.++.|+.. +++|||+ ..-...+.+..++++||+.+.
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 35899999985543 3456678888655 6788876 555678889999999998774
No 395
>PLN02316 synthase/transferase
Probab=26.88 E-value=7e+02 Score=32.03 Aligned_cols=113 Identities=10% Similarity=0.077 Sum_probs=59.3
Q ss_pred CcEEEEEeC--CHHHHHHHHHHHHhCC--C--eEEEECCHHHHHH-HHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC
Q 005719 23 GMRVLAVDD--DPTCLKVLENFLRACQ--Y--EVTVTNQAVTALK-MLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEM 95 (681)
Q Consensus 23 GmRVLIVDD--D~~~r~iL~~~Le~~g--y--~Vt~as~a~eALe-~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~ 95 (681)
+.+++||.+ ++.....++.+.+..+ + .|..+....+.+. .+.. ..|++++- .+-+.=|+-.++.++ .
T Consensus 869 ~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iya---aADiflmP-S~~EP~GLvqLEAMa--~ 942 (1036)
T PLN02316 869 NGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYA---GADFILVP-SIFEPCGLTQLTAMR--Y 942 (1036)
T ss_pred CcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHH---hCcEEEeC-CcccCccHHHHHHHH--c
Confidence 456666664 3333444555544332 1 3433322233332 1211 25777764 233444666666553 4
Q ss_pred CCcEEEEEcCCChHHHHHH---------HhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 96 DLPVIMLSAYGDTKLVMKG---------ITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 96 dlPVImLSa~~d~e~v~kA---------l~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
.+|+|+-....-.+.+... ...+..+|+..|.+.+.|...+.+++.
T Consensus 943 GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~ 997 (1036)
T PLN02316 943 GSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAIS 997 (1036)
T ss_pred CCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHh
Confidence 5666664333333333221 012478999999999999998888875
No 396
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=26.82 E-value=7.5e+02 Score=25.89 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=33.6
Q ss_pred HHHHHHHhccCCCcEEEEEcC---CChHHHHHHHhcCCcEEEeCCC--ChHHHHHHHHHHHH
Q 005719 85 FKLLEHVGLEMDLPVIMLSAY---GDTKLVMKGITHGACDYLLKPV--RIEELKNIWQHVIR 141 (681)
Q Consensus 85 ~elLe~I~~~~dlPVImLSa~---~d~e~v~kAl~~GA~DYLlKPv--s~eEL~~i~q~Vlr 141 (681)
..+++.+ ...+|+|+.... .......+.+..+-.+++..|- +.++|.+.+..++.
T Consensus 261 ~~l~Ea~--~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~ 320 (348)
T TIGR01133 261 STVAELA--AAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLL 320 (348)
T ss_pred hHHHHHH--HcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHc
Confidence 4445554 356898876422 1212223345566677887765 48999999988874
No 397
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=26.80 E-value=7.9e+02 Score=26.11 Aligned_cols=98 Identities=13% Similarity=0.089 Sum_probs=60.5
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEE-EC--CHHHHHHHHHhcCCCceEEEE-eC-CCCC------CCHHHHHHHHhcc
Q 005719 26 VLAVDDDPTCLKVLENFLRACQYEVTV-TN--QAVTALKMLRENRNNFDLVIS-DV-HMPD------MDGFKLLEHVGLE 94 (681)
Q Consensus 26 VLIVDDD~~~r~iL~~~Le~~gy~Vt~-as--~a~eALe~L~e~~~~pDLVLl-DV-~MPd------mDG~elLe~I~~~ 94 (681)
|+|.|=.......+...+++.|...+. +. +..+-++.+.+.. .+.|.+ .+ .--+ .+..++++.++..
T Consensus 121 viipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s--~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~ 198 (258)
T PRK13111 121 LIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHA--SGFVYYVSRAGVTGARSADAADLAELVARLKAH 198 (258)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC--CCcEEEEeCCCCCCcccCCCccHHHHHHHHHhc
Confidence 555565555566677777777865554 33 2234455554443 344433 21 1111 2345578888776
Q ss_pred CCCcEEEEEcCCChHHHHHHHhcCCcEEEeCC
Q 005719 95 MDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126 (681)
Q Consensus 95 ~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKP 126 (681)
.++||++=..-.+.+.+.++... |+..++-.
T Consensus 199 ~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 199 TDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred CCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 78999987777788888888875 99988765
No 398
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=26.75 E-value=1.1e+02 Score=31.83 Aligned_cols=39 Identities=21% Similarity=0.432 Sum_probs=32.0
Q ss_pred CCCcEEEEEcC------CChHHHHHHHhcCCcEEEeCCCChHHHH
Q 005719 95 MDLPVIMLSAY------GDTKLVMKGITHGACDYLLKPVRIEELK 133 (681)
Q Consensus 95 ~dlPVImLSa~------~d~e~v~kAl~~GA~DYLlKPvs~eEL~ 133 (681)
-.+|||+|+-+ ....++..+.++||..||+-.+.+||-.
T Consensus 94 vt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~ 138 (268)
T KOG4175|consen 94 VTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAE 138 (268)
T ss_pred cccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHH
Confidence 45899999865 5667888899999999999988887743
No 399
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=26.68 E-value=3.4e+02 Score=27.44 Aligned_cols=114 Identities=20% Similarity=0.248 Sum_probs=57.3
Q ss_pred CcEEEEEeCCH---HHHHHHHHHHHhCCCeEEEECC---HH----HHHHHHHhcCCCceEEEEeCCCCCCC--HHHHHHH
Q 005719 23 GMRVLAVDDDP---TCLKVLENFLRACQYEVTVTNQ---AV----TALKMLRENRNNFDLVISDVHMPDMD--GFKLLEH 90 (681)
Q Consensus 23 GmRVLIVDDD~---~~r~iL~~~Le~~gy~Vt~as~---a~----eALe~L~e~~~~pDLVLlDV~MPdmD--G~elLe~ 90 (681)
+.+|.+|--|. -..+.|+.+.+..+..+..+.. .. ++++.++. ..+|+||+|. |+.. -.+.+++
T Consensus 29 ~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~--~~~D~vlIDT--~Gr~~~d~~~~~e 104 (196)
T PF00448_consen 29 GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK--KGYDLVLIDT--AGRSPRDEELLEE 104 (196)
T ss_dssp T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH--TTSSEEEEEE---SSSSTHHHHHHH
T ss_pred cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh--cCCCEEEEec--CCcchhhHHHHHH
Confidence 55676664432 3456677777777877776553 22 33444332 3589999998 4432 2223332
Q ss_pred H----hc-cCCCcEEEEEcCCChHHHHHHH---h-cCCcEE-EeCCCChHHHHHHHHHHH
Q 005719 91 V----GL-EMDLPVIMLSAYGDTKLVMKGI---T-HGACDY-LLKPVRIEELKNIWQHVI 140 (681)
Q Consensus 91 I----~~-~~dlPVImLSa~~d~e~v~kAl---~-~GA~DY-LlKPvs~eEL~~i~q~Vl 140 (681)
+ .. .+.-.++++++....+....+. + .+.... ++|=-....+-.++..+.
T Consensus 105 l~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet~~~G~~l~~~~ 164 (196)
T PF00448_consen 105 LKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDETARLGALLSLAY 164 (196)
T ss_dssp HHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSSSTTHHHHHHHH
T ss_pred HHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCCCCcccceeHHH
Confidence 2 22 2344567777776555543332 2 245544 444333333334444333
No 400
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=26.62 E-value=2.3e+02 Score=27.13 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=39.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDV 77 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV 77 (681)
.|.+|.++.... ....+...... +.+++.+.+..+++++|... .+|.++.|.
T Consensus 109 ~~~~i~~~~g~~-~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~g--~~d~~i~~~ 160 (225)
T PF00497_consen 109 KGKRIGVVRGSS-YADYLKQQYPS-NINIVEVDSPEEALEALLSG--RIDAFIVDE 160 (225)
T ss_dssp TTSEEEEETTSH-HHHHHHHHTHH-TSEEEEESSHHHHHHHHHTT--SSSEEEEEH
T ss_pred cCcccccccchh-HHHHhhhhccc-hhhhcccccHHHHHHHHhcC--Ceeeeeccc
Confidence 567899888855 44455555543 67888899999999999854 599999974
No 401
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=26.55 E-value=3.3e+02 Score=30.21 Aligned_cols=63 Identities=21% Similarity=0.142 Sum_probs=39.7
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHHhCCCeEEEECC---------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH
Q 005719 24 MRVLAVDDDPTCL-----KVLENFLRACQYEVTVTNQ---------AVTALKMLRENRNNFDLVISDVHMPDMDGFKLLE 89 (681)
Q Consensus 24 mRVLIVDDD~~~r-----~iL~~~Le~~gy~Vt~as~---------a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe 89 (681)
-|+|||-|..... +.+...|+..+.++.++.. ..++.+.+++. .+|+||- .-+..-+++.+
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---iGGGS~iD~aK 101 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREF--GAQAVIA---IGGGSPIDSAK 101 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHc--CCCEEEE---eCCccHHHHHH
Confidence 4899998876532 5677888887877776642 33555566543 4788774 34555555555
Q ss_pred HH
Q 005719 90 HV 91 (681)
Q Consensus 90 ~I 91 (681)
.+
T Consensus 102 ~i 103 (383)
T cd08186 102 SA 103 (383)
T ss_pred HH
Confidence 44
No 402
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=26.53 E-value=5.8e+02 Score=26.31 Aligned_cols=108 Identities=18% Similarity=0.231 Sum_probs=61.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECC--HHHHHHHHHhcCCCceEEEEeCC-CCCCCHHHHHHHHhccCCC
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQY--EVTVTNQ--AVTALKMLRENRNNFDLVISDVH-MPDMDGFKLLEHVGLEMDL 97 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy--~Vt~as~--a~eALe~L~e~~~~pDLVLlDV~-MPdmDG~elLe~I~~~~dl 97 (681)
.++++|+.+.+. ...+.+++++.+. .|+.... ..+..+.+.. .|++++-.. ..+.-|+.+++.+. ..+
T Consensus 218 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~----ad~~i~ps~~~~e~~g~~~~Ea~~--~g~ 290 (357)
T cd03795 218 DAPLVIVGEGPL-EAELEALAAALGLLDRVRFLGRLDDEEKAALLAA----CDVFVFPSVERSEAFGIVLLEAMA--FGK 290 (357)
T ss_pred CcEEEEEeCChh-HHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHh----CCEEEeCCcccccccchHHHHHHH--cCC
Confidence 456666665442 3345555544332 4544432 2233344431 467665322 12344677777764 468
Q ss_pred cEEEEEcCCChHHHHHHHh-cCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 98 PVIMLSAYGDTKLVMKGIT-HGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 98 PVImLSa~~d~e~v~kAl~-~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
|||+--.....+. +. .|...++..+-+.+++.+.+..++.
T Consensus 291 Pvi~~~~~~~~~~----i~~~~~~g~~~~~~d~~~~~~~i~~l~~ 331 (357)
T cd03795 291 PVISTEIGTGGSY----VNLHGVTGLVVPPGDPAALAEAIRRLLE 331 (357)
T ss_pred CEEecCCCCchhH----HhhCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 9886432222222 33 4788899999999999999999875
No 403
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=26.53 E-value=3.1e+02 Score=30.13 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=39.8
Q ss_pred cEEEEEeCCHH-HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 005719 24 MRVLAVDDDPT-CLKVLENFLRACQYEVTVTN---------QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHV 91 (681)
Q Consensus 24 mRVLIVDDD~~-~r~iL~~~Le~~gy~Vt~as---------~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I 91 (681)
-|+|||-|... ....+.+.|+..+..+.++. ...++.+.+++. .+|+||- .-+..-+++.+.+
T Consensus 24 ~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGs~~D~aK~i 96 (367)
T cd08182 24 KRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREF--GPDAVLA---VGGGSVLDTAKAL 96 (367)
T ss_pred CeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhc--CcCEEEE---eCCcHHHHHHHHH
Confidence 48998877655 45667778887777666553 234566666653 4788764 3455556666554
No 404
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=26.44 E-value=2.8e+02 Score=25.37 Aligned_cols=65 Identities=12% Similarity=0.117 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEECC-HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEE
Q 005719 33 PTCLKVLENFLRACQYEVTVTNQ-AVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLS 103 (681)
Q Consensus 33 ~~~r~iL~~~Le~~gy~Vt~as~-a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLS 103 (681)
....+.+++.+++.|.++.+... ..+.-+. -..+|+|++-.+.-- -++-++.+....++||.++.
T Consensus 14 s~la~km~~~a~~~gi~~~i~a~~~~e~~~~----~~~~Dvill~PQv~~--~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 14 GLLANALNKGAKERGVPLEAAAGAYGSHYDM----IPDYDLVILAPQMAS--YYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeeHHHHHHh----ccCCCEEEEcChHHH--HHHHHHHHhhhcCCCEEEeC
Confidence 45566788888888887765433 3333322 245899998654311 12223333344578998876
No 405
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=26.42 E-value=6.4e+02 Score=24.95 Aligned_cols=50 Identities=12% Similarity=0.271 Sum_probs=34.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC-eEEEE-CCHHHHHHHHHhcCCCceEEEEeC
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQY-EVTVT-NQAVTALKMLRENRNNFDLVISDV 77 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy-~Vt~a-s~a~eALe~L~e~~~~pDLVLlDV 77 (681)
+.+|..||-++.....+++.+++.+. .+.+. .+..+ + . ....||+|+++.
T Consensus 66 ~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~-~--~--~~~~fD~I~s~~ 117 (181)
T TIGR00138 66 ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAED-F--Q--HEEQFDVITSRA 117 (181)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhh-c--c--ccCCccEEEehh
Confidence 36899999999988888888877665 35433 34433 2 1 124699999975
No 406
>PLN02275 transferase, transferring glycosyl groups
Probab=26.27 E-value=7.7e+02 Score=26.78 Aligned_cols=104 Identities=18% Similarity=0.190 Sum_probs=63.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCe-EEEEC---CHHHHHHHHHhcCCCceEEEEeC-CC-CCCCHHHHHHHHhccCC
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYE-VTVTN---QAVTALKMLRENRNNFDLVISDV-HM-PDMDGFKLLEHVGLEMD 96 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~-Vt~as---~a~eALe~L~e~~~~pDLVLlDV-~M-PdmDG~elLe~I~~~~d 96 (681)
+++.+||.|-+. +..+++.+++.+.. |+... ...+.-+.+.. .|+.++=. .. ...-+..+++.+. ..
T Consensus 261 ~i~l~ivG~G~~-~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~----aDv~v~~~~s~~~e~~p~~llEAmA--~G 333 (371)
T PLN02275 261 RLLFIITGKGPQ-KAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGS----ADLGVSLHTSSSGLDLPMKVVDMFG--CG 333 (371)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHh----CCEEEEeccccccccccHHHHHHHH--CC
Confidence 588999988764 57788888776643 44433 23444444442 58876411 11 1112456676653 57
Q ss_pred CcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 005719 97 LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139 (681)
Q Consensus 97 lPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~V 139 (681)
+|||+.. ... ..+.++.|.++|+.. +.++|.+.+..+
T Consensus 334 ~PVVa~~-~gg---~~eiv~~g~~G~lv~--~~~~la~~i~~l 370 (371)
T PLN02275 334 LPVCAVS-YSC---IGELVKDGKNGLLFS--SSSELADQLLEL 370 (371)
T ss_pred CCEEEec-CCC---hHHHccCCCCeEEEC--CHHHHHHHHHHh
Confidence 8998743 322 345577899999986 578887776654
No 407
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=26.20 E-value=5.8e+02 Score=26.50 Aligned_cols=100 Identities=16% Similarity=0.191 Sum_probs=57.4
Q ss_pred EEEEEeCCHHHHHHHHHHH---HhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCC---CHH----HHHHHHhcc
Q 005719 25 RVLAVDDDPTCLKVLENFL---RACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDM---DGF----KLLEHVGLE 94 (681)
Q Consensus 25 RVLIVDDD~~~r~iL~~~L---e~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdm---DG~----elLe~I~~~ 94 (681)
.|.+-.-+|..+..+..++ ++.|+.+..-+++.-..+.+. .+|.|.+|+..|.. ..+ ++++.+...
T Consensus 75 ~V~lTGGEPll~~~l~~li~~l~~~g~~v~leTNGtl~~~~l~----~~d~v~vs~K~~~sg~~~~~~~~~~~ik~l~~~ 150 (238)
T TIGR03365 75 HVSLSGGNPALQKPLGELIDLGKAKGYRFALETQGSVWQDWFR----DLDDLTLSPKPPSSGMETDWQALDDCIERLDDG 150 (238)
T ss_pred eEEEeCCchhhhHhHHHHHHHHHHCCCCEEEECCCCCcHHHHh----hCCEEEEeCCCCCCCCCCcHHHHHHHHHHhhhc
Confidence 5778888998865555554 456899988888765444443 26789999998852 123 233344322
Q ss_pred CC--CcEEEEEcCCChHHHHHHHhcC-CcEEEeCCCCh
Q 005719 95 MD--LPVIMLSAYGDTKLVMKGITHG-ACDYLLKPVRI 129 (681)
Q Consensus 95 ~d--lPVImLSa~~d~e~v~kAl~~G-A~DYLlKPvs~ 129 (681)
.. +.++ ++...+.+.+.+..... ...+++-|...
T Consensus 151 ~~~~vK~V-v~~~~d~~~a~~~~~~~~~~~~~l~P~~~ 187 (238)
T TIGR03365 151 PQTSLKVV-VFDDADYAYAKEVHARYPDLPFYLQPGNH 187 (238)
T ss_pred CceEEEEE-ECCcccHHHHHHHHHhcCCCCEEECCCCC
Confidence 22 2333 34444444443333211 12467778765
No 408
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=26.17 E-value=2.8e+02 Score=31.11 Aligned_cols=63 Identities=19% Similarity=0.128 Sum_probs=34.6
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 005719 24 MRVLAVDDDPTC----LKVLENFLRACQYEVTVTN---------QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEH 90 (681)
Q Consensus 24 mRVLIVDDD~~~----r~iL~~~Le~~gy~Vt~as---------~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~ 90 (681)
-|+|||-|.... .+.+.+.|++.|..+.++. ...++++.+++. .+|+||- .-+.+-++..|.
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~--~~D~Iia---vGGGS~iD~AKa 124 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRES--GCDGVIA---FGGGSVLDAAKA 124 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhc--CcCEEEE---eCChHHHHHHHH
Confidence 366777654322 2446666766676665542 234555566543 4777764 345555555554
Q ss_pred H
Q 005719 91 V 91 (681)
Q Consensus 91 I 91 (681)
+
T Consensus 125 i 125 (395)
T PRK15454 125 V 125 (395)
T ss_pred H
Confidence 4
No 409
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=26.04 E-value=2.1e+02 Score=28.13 Aligned_cols=56 Identities=11% Similarity=-0.000 Sum_probs=33.0
Q ss_pred CHHHHHHHHhcc-CCCcEEEEE--cCCChHHHHHHHhcCCcEEEeCCCCh-HHHHHHHHH
Q 005719 83 DGFKLLEHVGLE-MDLPVIMLS--AYGDTKLVMKGITHGACDYLLKPVRI-EELKNIWQH 138 (681)
Q Consensus 83 DG~elLe~I~~~-~dlPVImLS--a~~d~e~v~kAl~~GA~DYLlKPvs~-eEL~~i~q~ 138 (681)
.|+++++.++.. .++||++.. .......+..+.++||+..+...... +.+..+++.
T Consensus 39 ~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~ 98 (202)
T cd04726 39 EGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAPLSTIKKAVKA 98 (202)
T ss_pred hCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHH
Confidence 467888888654 577876532 22222345677889988777654432 334444444
No 410
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=25.93 E-value=5.3e+02 Score=30.33 Aligned_cols=100 Identities=12% Similarity=0.117 Sum_probs=62.5
Q ss_pred HHHHHHHHHhCCCeEEE--ECCHHHHHHHHHh-cCCCceEEEEeCCCC---CCCH--HHHHHHHhccCCCcEEEEEcCCC
Q 005719 36 LKVLENFLRACQYEVTV--TNQAVTALKMLRE-NRNNFDLVISDVHMP---DMDG--FKLLEHVGLEMDLPVIMLSAYGD 107 (681)
Q Consensus 36 r~iL~~~Le~~gy~Vt~--as~a~eALe~L~e-~~~~pDLVLlDV~MP---dmDG--~elLe~I~~~~dlPVImLSa~~d 107 (681)
...+...|++.|+.+.. +..+...+..+.. +.-++|.|=+|-.+- ..+. .+.+..+....++.|| ...-++
T Consensus 541 ~~~~~~~l~~~G~~ialDdfG~g~ss~~~L~~~~~l~~d~iKid~~~~~~~~~~~~~~~~i~~~a~~l~~~vi-aegVEt 619 (660)
T PRK11829 541 ALRLLRELQGLGLLIALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNLPEDDAIARIISCVSDVLKVRVM-AEGVET 619 (660)
T ss_pred HHHHHHHHHhCCCEEEEECCCCchhhHHHHhccCCCCCcEEEECHHHHhcccCCHHHHHHHHHHHHHcCCeEE-EecCCC
Confidence 33445557778988775 5566677777764 013589999995321 1121 2223333334566655 456667
Q ss_pred hHHHHHHHhcCCcE----EEeCCCChHHHHHHH
Q 005719 108 TKLVMKGITHGACD----YLLKPVRIEELKNIW 136 (681)
Q Consensus 108 ~e~v~kAl~~GA~D----YLlKPvs~eEL~~i~ 136 (681)
.+....+.+.|++. |+-||...+++....
T Consensus 620 ~~~~~~l~~~g~d~~QGy~~~~P~~~~~~~~~~ 652 (660)
T PRK11829 620 EEQRQWLLEHGIQCGQGFLFSPPLPRAEFEAQY 652 (660)
T ss_pred HHHHHHHHHcCCCEEecCcccCCCCHHHHHHHh
Confidence 77778888899864 789999998875433
No 411
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=25.79 E-value=6.1e+02 Score=29.08 Aligned_cols=55 Identities=29% Similarity=0.350 Sum_probs=32.6
Q ss_pred CCcEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECC---HH----HHHHHHHhcCCCceEEEEeCC
Q 005719 22 IGMRVLAVDDDPT---CLKVLENFLRACQYEVTVTNQ---AV----TALKMLRENRNNFDLVISDVH 78 (681)
Q Consensus 22 ~GmRVLIVDDD~~---~r~iL~~~Le~~gy~Vt~as~---a~----eALe~L~e~~~~pDLVLlDV~ 78 (681)
.|.+|++|+-|.. ....|+.+.+..+..+..+.. .. ++++.+. ...+|+||+|.-
T Consensus 127 ~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~--~~~~DvVIIDTa 191 (428)
T TIGR00959 127 QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAK--ENGFDVVIVDTA 191 (428)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC
Confidence 4679999998843 234455555555656555432 32 3333333 235899999983
No 412
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=25.77 E-value=3.3e+02 Score=30.46 Aligned_cols=63 Identities=14% Similarity=0.158 Sum_probs=40.1
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 005719 24 MRVLAVDDDPT----CLKVLENFLRACQYEVTVTN---------QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEH 90 (681)
Q Consensus 24 mRVLIVDDD~~----~r~iL~~~Le~~gy~Vt~as---------~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~ 90 (681)
-|||||-|... ..+.+...|+..|+.+.++. ...++++.+++. .+|+||- .-+..-+++.+.
T Consensus 22 ~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---iGGGS~iD~AK~ 96 (398)
T cd08178 22 KRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSF--KPDTIIA---LGGGSPMDAAKI 96 (398)
T ss_pred CeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhc--CCCEEEE---eCCccHHHHHHH
Confidence 58999987543 33356777877788777664 234666666654 4898874 345555555554
Q ss_pred H
Q 005719 91 V 91 (681)
Q Consensus 91 I 91 (681)
+
T Consensus 97 i 97 (398)
T cd08178 97 M 97 (398)
T ss_pred H
Confidence 4
No 413
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=25.70 E-value=4.6e+02 Score=29.32 Aligned_cols=94 Identities=13% Similarity=0.105 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCC----CHHHHHHHHhc-cCCCcEEEEEcCC
Q 005719 32 DPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDM----DGFKLLEHVGL-EMDLPVIMLSAYG 106 (681)
Q Consensus 32 D~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdm----DG~elLe~I~~-~~dlPVImLSa~~ 106 (681)
+..-.+.+...|...||..+.. ...+|+|++..-.... ..+++++.++. .++.+||+-..+.
T Consensus 9 N~~ds~~~~~~l~~~g~~~~~~-------------~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvvgGc~a 75 (414)
T TIGR01579 9 NQYESESLKNQLIQKGYEVVPD-------------EDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIVTGCYA 75 (414)
T ss_pred CHHHHHHHHHHHHHCcCEECCC-------------cccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEEECCcc
Confidence 3444567788888888875531 1247999998654433 35667777743 3456655543332
Q ss_pred ChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 005719 107 DTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139 (681)
Q Consensus 107 d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~V 139 (681)
...-.++.++...|++..+-....+.+++...
T Consensus 76 -~~~~ee~~~~~~vD~vv~~e~~~~~~~ll~~~ 107 (414)
T TIGR01579 76 -QSNPKELADLKDVDLVLGNKEKDKINKLLSLG 107 (414)
T ss_pred -ccCHHHHhcCCCCcEEECCCCHHHHHHHHHHH
Confidence 22223344566678999998888888777654
No 414
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=25.57 E-value=3.4e+02 Score=27.82 Aligned_cols=56 Identities=16% Similarity=0.286 Sum_probs=40.6
Q ss_pred Cce-EEEEeCCC---CCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhc-CCcEEEe
Q 005719 69 NFD-LVISDVHM---PDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITH-GACDYLL 124 (681)
Q Consensus 69 ~pD-LVLlDV~M---PdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~-GA~DYLl 124 (681)
.+| +++.++.- ..+-.+++++.+....++|||+.-...+.+.+.++++. ||+..++
T Consensus 162 G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 162 GAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred CCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 467 55655542 11224677888866678999999888899999999997 8887765
No 415
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=25.50 E-value=2.7e+02 Score=32.53 Aligned_cols=30 Identities=13% Similarity=0.026 Sum_probs=26.7
Q ss_pred CCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 96 DLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 96 dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
.+|||+-.+-.....+.+|+.+||+..++-
T Consensus 352 ~~~viadgGir~~gdi~KAla~GA~~vm~G 381 (502)
T PRK07107 352 YIPICSDGGIVYDYHMTLALAMGADFIMLG 381 (502)
T ss_pred cceEEEcCCCCchhHHHHHHHcCCCeeeeC
Confidence 389999999999999999999999988764
No 416
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=25.39 E-value=7.5e+02 Score=27.80 Aligned_cols=80 Identities=11% Similarity=0.047 Sum_probs=48.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-eEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQY-EVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIM 101 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy-~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVIm 101 (681)
-+|+-||-++...+..++-++..+. .+. ...++.+.+..+......||+|++|.-=.++ ..++++.+.....-.||.
T Consensus 315 ~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~-~~~~l~~l~~l~~~~ivy 393 (431)
T TIGR00479 315 KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKGC-AAEVLRTIIELKPERIVY 393 (431)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCCC-CHHHHHHHHhcCCCEEEE
Confidence 4799999999999888887776554 333 4556666554332222358999998522111 356666664322223555
Q ss_pred EEc
Q 005719 102 LSA 104 (681)
Q Consensus 102 LSa 104 (681)
++.
T Consensus 394 vsc 396 (431)
T TIGR00479 394 VSC 396 (431)
T ss_pred EcC
Confidence 553
No 417
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=25.01 E-value=4.2e+02 Score=27.65 Aligned_cols=71 Identities=15% Similarity=0.143 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeCCCCC---CCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 54 NQAVTALKMLRENRNNFDLVISDVHMPD---MDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 54 s~a~eALe~L~e~~~~pDLVLlDV~MPd---mDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
.+..+..+.+.... .-.|+++|+.-.. ..-+++++.|....++||++-..-.+.+.+.+++..||+..++-
T Consensus 30 ~dp~~~a~~~~~~G-~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 30 GDPVELAQRYDEEG-ADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSIN 103 (254)
T ss_pred CCHHHHHHHHHHcC-CCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 46667667666432 2358888887543 23466778886667899999999999999999999999887664
No 418
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=25.01 E-value=2.6e+02 Score=25.46 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=37.3
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCC--hHHHHHHH
Q 005719 70 FDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVR--IEELKNIW 136 (681)
Q Consensus 70 pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs--~eEL~~i~ 136 (681)
...|++-. .+|......-+..+.+|||++|..... ...-.+..|+.-++.++.. .+++....
T Consensus 17 ak~Ivv~T----~sG~ta~~isk~RP~~pIiavt~~~~~-~r~l~l~~GV~p~~~~~~~~~~~~~~~~a 80 (117)
T PF02887_consen 17 AKAIVVFT----ESGRTARLISKYRPKVPIIAVTPNESV-ARQLSLYWGVYPVLIEEFDKDTEELIAEA 80 (117)
T ss_dssp ESEEEEE-----SSSHHHHHHHHT-TSSEEEEEESSHHH-HHHGGGSTTEEEEECSSHSHSHHHHHHHH
T ss_pred CCEEEEEC----CCchHHHHHHhhCCCCeEEEEcCcHHH-HhhhhcccceEEEEeccccccHHHHHHHH
Confidence 45566533 345444433356789999999986443 2333577899998888766 44444433
No 419
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=24.99 E-value=2.1e+02 Score=31.56 Aligned_cols=56 Identities=11% Similarity=0.133 Sum_probs=42.1
Q ss_pred ceEEEEeCCCCCC-CHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 70 FDLVISDVHMPDM-DGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 70 pDLVLlDV~MPdm-DG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
.|+|++|+.--.. .-++.++.|+.....|+|+.-.....+.+..+++.||+.+.+-
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 5999999854432 3456777787666667777766778899999999999988644
No 420
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=24.96 E-value=3.3e+02 Score=30.29 Aligned_cols=63 Identities=11% Similarity=0.191 Sum_probs=38.3
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 005719 24 MRVLAVDDDPTC----LKVLENFLRACQYEVTVTN---------QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEH 90 (681)
Q Consensus 24 mRVLIVDDD~~~----r~iL~~~Le~~gy~Vt~as---------~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~ 90 (681)
-|||||-|.... .+.+...|++.+.++.++. ...++++.+++. .+|+||- .-+..-+++.|.
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---iGGGS~iD~aK~ 105 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKAS--GADYLIA---IGGGSPQDTCKA 105 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhc--CCCEEEE---eCChHHHHHHHH
Confidence 488998776542 3356777877777776653 224556666653 4888774 345555555554
Q ss_pred H
Q 005719 91 V 91 (681)
Q Consensus 91 I 91 (681)
+
T Consensus 106 i 106 (382)
T PRK10624 106 I 106 (382)
T ss_pred H
Confidence 3
No 421
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=24.91 E-value=1.7e+02 Score=30.32 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=10.7
Q ss_pred CCcEEEEEeCCHH
Q 005719 22 IGMRVLAVDDDPT 34 (681)
Q Consensus 22 ~GmRVLIVDDD~~ 34 (681)
.|.||+|||-|+.
T Consensus 29 ~G~~VlliD~DpQ 41 (231)
T PRK13849 29 DGKRVALFEADEN 41 (231)
T ss_pred CCCcEEEEeCCCC
Confidence 4789999999874
No 422
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=24.84 E-value=1.1e+03 Score=29.51 Aligned_cols=65 Identities=17% Similarity=0.347 Sum_probs=45.2
Q ss_pred eEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 71 DLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 71 DLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
|++++= ..-+.=|+.+++... ..+|||+ |.... ..+.+..|..+|++.|.+.++|.+.+..++.+
T Consensus 645 dVfV~P-S~~EpFGLvvLEAMA--cGlPVVA-T~~GG---~~EiV~dg~tGfLVdp~D~eaLA~aL~~ll~k 709 (784)
T TIGR02470 645 GIFVQP-ALYEAFGLTVLEAMT--CGLPTFA-TRFGG---PLEIIQDGVSGFHIDPYHGEEAAEKIVDFFEK 709 (784)
T ss_pred cEEEEC-CcccCCCHHHHHHHH--cCCCEEE-cCCCC---HHHHhcCCCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 555542 233455777777653 5689886 44443 33457789999999999999999999887643
No 423
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=24.80 E-value=5.4e+02 Score=28.04 Aligned_cols=95 Identities=13% Similarity=0.167 Sum_probs=58.6
Q ss_pred EEeCCHHHHHHHHHHHHhCCCeEEEE------CC---HHHHHHHHHhcCCCceEEEEeCCC-CC-C---CHHHHHHHHhc
Q 005719 28 AVDDDPTCLKVLENFLRACQYEVTVT------NQ---AVTALKMLRENRNNFDLVISDVHM-PD-M---DGFKLLEHVGL 93 (681)
Q Consensus 28 IVDDD~~~r~iL~~~Le~~gy~Vt~a------s~---a~eALe~L~e~~~~pDLVLlDV~M-Pd-m---DG~elLe~I~~ 93 (681)
++.|-....++++.+-+..++.|.+- .+ ..+..+.+.+ ...|.|.+.-.. +. . -.+++++.+..
T Consensus 114 ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~--~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~ 191 (321)
T PRK10415 114 LLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAED--CGIQALTIHGRTRACLFNGEAEYDSIRAVKQ 191 (321)
T ss_pred HhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHH--hCCCEEEEecCccccccCCCcChHHHHHHHH
Confidence 44555566666666655556555531 12 2233333332 346766554322 22 1 23778888877
Q ss_pred cCCCcEEEEEcCCChHHHHHHHh-cCCcEEEe
Q 005719 94 EMDLPVIMLSAYGDTKLVMKGIT-HGACDYLL 124 (681)
Q Consensus 94 ~~dlPVImLSa~~d~e~v~kAl~-~GA~DYLl 124 (681)
..++|||....-.+.+.+.++++ .||+...+
T Consensus 192 ~~~iPVI~nGgI~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 192 KVSIPVIANGDITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred hcCCcEEEeCCCCCHHHHHHHHhccCCCEEEE
Confidence 77899999988889999999997 58887654
No 424
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=24.75 E-value=1.2e+02 Score=33.44 Aligned_cols=64 Identities=20% Similarity=0.353 Sum_probs=48.5
Q ss_pred CHHHHHHHH-HhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcE
Q 005719 55 QAVTALKML-RENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACD 121 (681)
Q Consensus 55 ~a~eALe~L-~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~D 121 (681)
+..||++.+ ....+..|+|++= |.+--+++++.++...++||.+.-...+-..+..|.+.|..|
T Consensus 226 n~~eAlre~~~D~~EGAD~lMVK---Pal~YLDIi~~~k~~~~~PvaaYqVSGEYaMikaAa~~G~~D 290 (323)
T PRK09283 226 NRREALREVALDIEEGADMVMVK---PALPYLDIIRRVKDEFNLPVAAYQVSGEYAMIKAAAQNGWID 290 (323)
T ss_pred CHHHHHHHHHhhHHhCCCEEEEc---CCchHHHHHHHHHhcCCCCEEEEEccHHHHHHHHHHHcCCCC
Confidence 456666644 3334568999885 667778899999887899999998887777888888888755
No 425
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=24.73 E-value=3e+02 Score=28.50 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 56 AVTALKMLRENRNNFDLVISDVHMPD-MDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 56 a~eALe~L~e~~~~pDLVLlDV~MPd-mDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
..++++.+.+. .-.+|++|+.--+ +.|++ +......++|||+-..-...+.+.++...|++..+.
T Consensus 145 ~~~~~~~~~~~--~~~ii~t~i~~dGt~~G~d--~l~~~~~~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 145 VEDAYEMLKNY--VNRFIYTSIERDGTLTGIE--EIERFWGDEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred HHHHHHHHHHH--hCEEEEEeccchhcccCHH--HHHHhcCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 34555555443 2369999998776 47777 222222579999999999999999999999988665
No 426
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=24.72 E-value=1.5e+02 Score=32.51 Aligned_cols=63 Identities=24% Similarity=0.241 Sum_probs=40.4
Q ss_pred CcEEEEEeCCHH----HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH
Q 005719 23 GMRVLAVDDDPT----CLKVLENFLRACQYEVTVTN---------QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLE 89 (681)
Q Consensus 23 GmRVLIVDDD~~----~r~iL~~~Le~~gy~Vt~as---------~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe 89 (681)
| |||||-|... ..+.+...|++.+.++.++. +..++.+.+++. .+|.||- .-+..-+++.|
T Consensus 22 g-r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~IIa---iGGGS~~D~aK 95 (366)
T PF00465_consen 22 G-RVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKF--GADCIIA---IGGGSVMDAAK 95 (366)
T ss_dssp T-EEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHT--TSSEEEE---EESHHHHHHHH
T ss_pred C-CEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhc--CCCEEEE---cCCCCcCcHHH
Confidence 6 9999988744 23556667777788776654 345677777654 4898775 34444455555
Q ss_pred HH
Q 005719 90 HV 91 (681)
Q Consensus 90 ~I 91 (681)
.+
T Consensus 96 ~v 97 (366)
T PF00465_consen 96 AV 97 (366)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 427
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=24.70 E-value=3.1e+02 Score=27.60 Aligned_cols=71 Identities=6% Similarity=0.105 Sum_probs=47.7
Q ss_pred HHHHHHHHhCCCeEEEECC-HHH---HHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCC
Q 005719 37 KVLENFLRACQYEVTVTNQ-AVT---ALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGD 107 (681)
Q Consensus 37 ~iL~~~Le~~gy~Vt~as~-a~e---ALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d 107 (681)
++|+..++.++..+.+..+ +.+ .|.+++.....+.+|++|..+.--.-+++++.+....++.|+++.....
T Consensus 3 ~~l~~a~~~~~~~~~~s~SgGKDS~Vll~L~~~~~~~~~v~f~DTg~efpeT~efv~~~~~~~~l~i~~~~~~~~ 77 (212)
T TIGR00434 3 EIIAWAYVTFGGHLVYSTSFGIQGAVLLDLVSKISPDIPVIFLDTGYHFPETYELIDELTERYPLNIKVYKPDLS 77 (212)
T ss_pred HHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEECCchh
Confidence 4567777777755554433 343 3445554445678999999887777888888886666777887776533
No 428
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=24.63 E-value=7.7e+02 Score=25.24 Aligned_cols=63 Identities=17% Similarity=0.252 Sum_probs=42.4
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 005719 70 FDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140 (681)
Q Consensus 70 pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vl 140 (681)
.|++++-....+.-|+.++|.+. ..+|||.--... ..+.+..|...|+..+ .++|...+..+.
T Consensus 244 ~d~~v~ps~~~E~~~~~~lEAma--~G~PvI~~~~~~----~~e~i~~~~~g~l~~~--~~~l~~~l~~l~ 306 (335)
T cd03802 244 ARALLFPILWEEPFGLVMIEAMA--CGTPVIAFRRGA----VPEVVEDGVTGFLVDS--VEELAAAVARAD 306 (335)
T ss_pred CcEEEeCCcccCCcchHHHHHHh--cCCCEEEeCCCC----chhheeCCCcEEEeCC--HHHHHHHHHHHh
Confidence 57777755445566777887764 457888543222 2234677888999988 888888887764
No 429
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=24.59 E-value=4e+02 Score=28.51 Aligned_cols=93 Identities=12% Similarity=0.025 Sum_probs=0.0
Q ss_pred EEEEeCC---------HHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-C
Q 005719 26 VLAVDDD---------PTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE-M 95 (681)
Q Consensus 26 VLIVDDD---------~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~-~ 95 (681)
|||-|++ ....+.+++.+... .-.+.+.+..++.+.+... .|.|.+| .|.-.+--++++.++.. +
T Consensus 155 vlikdnH~~~~g~~~~~~av~~~R~~~~~~-~IgVev~t~eea~~A~~~g---aD~I~ld-~~~p~~l~~~~~~~~~~~~ 229 (272)
T cd01573 155 ILVFAEHRAFLGGPEPLKALARLRATAPEK-KIVVEVDSLEEALAAAEAG---ADILQLD-KFSPEELAELVPKLRSLAP 229 (272)
T ss_pred eEeehhHHHHhCCchHHHHHHHHHHhCCCC-eEEEEcCCHHHHHHHHHcC---CCEEEEC-CCCHHHHHHHHHHHhccCC
Q ss_pred CCcEEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 96 DLPVIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 96 dlPVImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
++|++++..- +.+.+.+..+.||+.+..
T Consensus 230 ~i~i~AsGGI-~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 230 PVLLAAAGGI-NIENAAAYAAAGADILVT 257 (272)
T ss_pred CceEEEECCC-CHHHHHHHHHcCCcEEEE
No 430
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=24.58 E-value=4.8e+02 Score=28.72 Aligned_cols=97 Identities=16% Similarity=0.031 Sum_probs=55.7
Q ss_pred EEEEeCCHHHHHHHHHHH-------HhCCC--eE-EEECCHHHHHHHHH---hcCCCceEEEEeCC--CCCC---CHHHH
Q 005719 26 VLAVDDDPTCLKVLENFL-------RACQY--EV-TVTNQAVTALKMLR---ENRNNFDLVISDVH--MPDM---DGFKL 87 (681)
Q Consensus 26 VLIVDDD~~~r~iL~~~L-------e~~gy--~V-t~as~a~eALe~L~---e~~~~pDLVLlDV~--MPdm---DG~el 87 (681)
|||-|.+-...-.+...+ +..++ .+ +.+.+..++.+.+. ..+..+|+|++|=. -|+. +--++
T Consensus 173 vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l 252 (308)
T PLN02716 173 VMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSML 252 (308)
T ss_pred EEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHH
Confidence 777776655443333332 22223 23 35778888888886 11235899999943 1221 22233
Q ss_pred HHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEE
Q 005719 88 LEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDY 122 (681)
Q Consensus 88 Le~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DY 122 (681)
-+.+........|-.++.-..+.+.+....|++..
T Consensus 253 ~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~I 287 (308)
T PLN02716 253 KEAVELINGRFETEASGNVTLDTVHKIGQTGVTYI 287 (308)
T ss_pred HHHHHhhCCCceEEEECCCCHHHHHHHHHcCCCEE
Confidence 33333222333477788888888888888888654
No 431
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=24.53 E-value=5.4e+02 Score=27.51 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=31.9
Q ss_pred CHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEE
Q 005719 83 DGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYL 123 (681)
Q Consensus 83 DG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYL 123 (681)
..+++++.++...++|||......+.+.+.++++.|.+|++
T Consensus 268 ~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V 308 (327)
T cd02803 268 YFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLV 308 (327)
T ss_pred hhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCee
Confidence 34567777876678999988888889999999999655553
No 432
>PLN02366 spermidine synthase
Probab=24.35 E-value=2.8e+02 Score=30.23 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=40.8
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhC-----CCeEEE-ECCHHHHHHHHHhcCCCceEEEEeCCCCC
Q 005719 19 KFPIGMRVLAVDDDPTCLKVLENFLRAC-----QYEVTV-TNQAVTALKMLRENRNNFDLVISDVHMPD 81 (681)
Q Consensus 19 ~fP~GmRVLIVDDD~~~r~iL~~~Le~~-----gy~Vt~-as~a~eALe~L~e~~~~pDLVLlDV~MPd 81 (681)
+.|...+|.+||=|+.+.+..++.+... +-+|.+ +.++.+.++... ...||+||+|..-|.
T Consensus 111 k~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~--~~~yDvIi~D~~dp~ 177 (308)
T PLN02366 111 RHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP--EGTYDAIIVDSSDPV 177 (308)
T ss_pred hCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc--CCCCCEEEEcCCCCC
Confidence 3455578999999999888888887542 224543 445555554321 346999999986664
No 433
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=24.31 E-value=6.3e+02 Score=26.17 Aligned_cols=78 Identities=17% Similarity=0.168 Sum_probs=51.5
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHh---cCCcEEEe------
Q 005719 57 VTALKMLRENRNNFDLVISDVHMPDM---DGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGIT---HGACDYLL------ 124 (681)
Q Consensus 57 ~eALe~L~e~~~~pDLVLlDV~MPdm---DG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~---~GA~DYLl------ 124 (681)
.+.++.+.+. .--.+++.|+..-++ -.+++++.+....++|||+-..-.+.+.+.++.+ .||+..++
T Consensus 149 ~~~~~~l~~~-G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~ 227 (241)
T PRK14024 149 WEVLERLDSA-GCSRYVVTDVTKDGTLTGPNLELLREVCARTDAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYA 227 (241)
T ss_pred HHHHHHHHhc-CCCEEEEEeecCCCCccCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHc
Confidence 3444444432 223588999865432 2377788886667899998877788888877753 48988654
Q ss_pred CCCChHHHHHH
Q 005719 125 KPVRIEELKNI 135 (681)
Q Consensus 125 KPvs~eEL~~i 135 (681)
.+++.++++..
T Consensus 228 g~~~~~~~~~~ 238 (241)
T PRK14024 228 GAFTLPEALAV 238 (241)
T ss_pred CCCCHHHHHHH
Confidence 46777766544
No 434
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=24.25 E-value=3.8e+02 Score=28.10 Aligned_cols=61 Identities=11% Similarity=0.154 Sum_probs=42.1
Q ss_pred CcEEEEE------eCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 005719 23 GMRVLAV------DDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHV 91 (681)
Q Consensus 23 GmRVLIV------DDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I 91 (681)
+-||++| +|...+....++.+++.|++|+......+.++.+.. .|+|++ ++.+-+.+++.+
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~~----ad~I~v----~GGnt~~l~~~l 97 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIEN----AEAIFV----GGGNTFQLLKQL 97 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHhc----CCEEEE----CCccHHHHHHHH
Confidence 4577777 444555667888888888888887777666666642 577776 567777766655
No 435
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=24.23 E-value=2e+02 Score=36.10 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=55.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCeEEEECCHHHHHHHHHh---cCCCceEEEEeCCC--CCC-CHHH-HHHHHhcc
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRAC-QYEVTVTNQAVTALKMLRE---NRNNFDLVISDVHM--PDM-DGFK-LLEHVGLE 94 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~-gy~Vt~as~a~eALe~L~e---~~~~pDLVLlDV~M--Pdm-DG~e-lLe~I~~~ 94 (681)
-|||||||....+--.|..+|+.. |..++++.+-.-.++.+.. ....||.||+---- |.. ..+. .++.|...
T Consensus 81 ~~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~ 160 (918)
T PLN02889 81 FVRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCPADIGICLRLLLEC 160 (918)
T ss_pred cceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccchHHHHHHHHHHHHh
Confidence 389999999999999999999987 8887766543212222211 12358888886431 211 1121 23344333
Q ss_pred CCCcEEEEEcCCChHHHHHHHhcCCc
Q 005719 95 MDLPVIMLSAYGDTKLVMKGITHGAC 120 (681)
Q Consensus 95 ~dlPVImLSa~~d~e~v~kAl~~GA~ 120 (681)
..+||+-++- ....-+...|+.
T Consensus 161 ~~iPILGICL----GhQ~i~~~~Gg~ 182 (918)
T PLN02889 161 RDIPILGVCL----GHQALGYVHGAR 182 (918)
T ss_pred CCCcEEEEcH----HHHHHHHhcCce
Confidence 4699988863 233334455553
No 436
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=24.04 E-value=2.4e+02 Score=30.38 Aligned_cols=58 Identities=17% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHHHHHHh-ccCCCcEEEEEcC------CChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 85 FKLLEHVG-LEMDLPVIMLSAY------GDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 85 ~elLe~I~-~~~dlPVImLSa~------~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
+++++.++ ....+|+|+|+-. .-.....++.+.|++..|+--+-.++-......+-+.
T Consensus 82 lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~ 146 (265)
T COG0159 82 LELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKH 146 (265)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHc
No 437
>PRK10586 putative oxidoreductase; Provisional
Probab=23.80 E-value=5.7e+02 Score=28.41 Aligned_cols=78 Identities=9% Similarity=0.093 Sum_probs=48.0
Q ss_pred cEEEEEeCCHHHHH---HHHHHHHhCCCeEEEEC--CHHHHHHHH-HhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 005719 24 MRVLAVDDDPTCLK---VLENFLRACQYEVTVTN--QAVTALKML-RENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDL 97 (681)
Q Consensus 24 mRVLIVDDD~~~r~---iL~~~Le~~gy~Vt~as--~a~eALe~L-~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dl 97 (681)
-|+|||-+...... .+...|+..++.+..+. ...+.++.+ +.....+|+||- .-+..-++..|.+.....+
T Consensus 35 ~~~lvv~g~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~v~~l~~~~~~~~d~iia---vGGGs~iD~aK~~a~~~~~ 111 (362)
T PRK10586 35 SRAVWIYGERAIAAAQPYLPPAFELPGAKHILFRGHCSESDVAQLAAASGDDRQVVIG---VGGGALLDTAKALARRLGL 111 (362)
T ss_pred CeEEEEEChHHHHHHHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHhccCCCEEEE---ecCcHHHHHHHHHHhhcCC
Confidence 48999988776643 35666777677665443 122222222 222235688774 4567778888888656678
Q ss_pred cEEEEEc
Q 005719 98 PVIMLSA 104 (681)
Q Consensus 98 PVImLSa 104 (681)
|+|.+-.
T Consensus 112 p~i~vPT 118 (362)
T PRK10586 112 PFVAIPT 118 (362)
T ss_pred CEEEEeC
Confidence 8877743
No 438
>PRK14099 glycogen synthase; Provisional
Probab=23.78 E-value=7.7e+02 Score=28.33 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=18.8
Q ss_pred CcEEEeCCCChHHHHHHHHHHH
Q 005719 119 ACDYLLKPVRIEELKNIWQHVI 140 (681)
Q Consensus 119 A~DYLlKPvs~eEL~~i~q~Vl 140 (681)
..+|+..|.+.++|...+.+++
T Consensus 421 ~~G~l~~~~d~~~La~ai~~a~ 442 (485)
T PRK14099 421 ATGVQFSPVTADALAAALRKTA 442 (485)
T ss_pred CceEEeCCCCHHHHHHHHHHHH
Confidence 5789999999999999888753
No 439
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=23.68 E-value=6.2e+02 Score=27.15 Aligned_cols=97 Identities=19% Similarity=0.191 Sum_probs=61.7
Q ss_pred HHHHHHHhCCCeEEEECCH--HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCcEEEEEcCCChHHHH
Q 005719 38 VLENFLRACQYEVTVTNQA--VTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL---EMDLPVIMLSAYGDTKLVM 112 (681)
Q Consensus 38 iL~~~Le~~gy~Vt~as~a--~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~---~~dlPVImLSa~~d~e~v~ 112 (681)
.++..|..-...+-..... .-..|.+.. ..||.+++|..--..|.-.++..|+. ....||| --...+...+.
T Consensus 7 ~fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~--aGfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvV-R~p~g~~~~Ik 83 (255)
T COG3836 7 SFKAALAAGRPQIGLWLSLPDPYMAEILAT--AGFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVV-RPPVGDPVMIK 83 (255)
T ss_pred hHHHHHhCCCceEEeeecCCcHHHHHHHHh--cCCCEEEecccccCccHHHHHHHHHHhhccCCCCee-eCCCCCHHHHH
Confidence 3566666533444332222 223444443 46999999998888888888887742 2334554 44456788999
Q ss_pred HHHhcCCcEEEeCCCCh-HHHHHHHH
Q 005719 113 KGITHGACDYLLKPVRI-EELKNIWQ 137 (681)
Q Consensus 113 kAl~~GA~DYLlKPvs~-eEL~~i~q 137 (681)
+.+..||..+|+.=++. ++-+..+.
T Consensus 84 q~LD~GAqtlliPmV~s~eqAr~~V~ 109 (255)
T COG3836 84 QLLDIGAQTLLIPMVDTAEQARQAVA 109 (255)
T ss_pred HHHccccceeeeeccCCHHHHHHHHH
Confidence 99999999999866654 44444433
No 440
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=23.66 E-value=4.2e+02 Score=29.78 Aligned_cols=100 Identities=19% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCcEEEEEe---------CCHHHHHHHHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEE------------EEeCC
Q 005719 22 IGMRVLAVD---------DDPTCLKVLENFLRACQYEVTV--TNQAVTALKMLRENRNNFDLV------------ISDVH 78 (681)
Q Consensus 22 ~GmRVLIVD---------DD~~~r~iL~~~Le~~gy~Vt~--as~a~eALe~L~e~~~~pDLV------------LlDV~ 78 (681)
.|..+++|+ .-...-..|.++++..+..|.. +.+..+|+++++.. +|.| ++.+.
T Consensus 154 AGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aG---aDgV~~G~gg~~~~~~~lg~~ 230 (369)
T TIGR01304 154 AGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTG---AAGVIVGPGGANTTRLVLGIE 230 (369)
T ss_pred CCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcC---CCEEEECCCCCcccccccCCC
Q ss_pred CCCCCHHHHHHHHhcc-------CCCcEEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 79 MPDMDGFKLLEHVGLE-------MDLPVIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 79 MPdmDG~elLe~I~~~-------~dlPVImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
.|...-+.-+...+.. ..+|||+-..-.+...+.+|+.+||+...+
T Consensus 231 ~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~i 283 (369)
T TIGR01304 231 VPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVL 283 (369)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeee
No 441
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.63 E-value=3.1e+02 Score=29.94 Aligned_cols=100 Identities=17% Similarity=0.286 Sum_probs=59.4
Q ss_pred EEEEE--eCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHH----------------HHhcCCCceEEEEeCCCCCCC
Q 005719 25 RVLAV--DDDPT---CLKVLENFLRACQYEVTVTNQAVTALKM----------------LRENRNNFDLVISDVHMPDMD 83 (681)
Q Consensus 25 RVLIV--DDD~~---~r~iL~~~Le~~gy~Vt~as~a~eALe~----------------L~e~~~~pDLVLlDV~MPdmD 83 (681)
+|.|+ .+.+. ....|.++|++.|+++.......+.+.. .......+|+||+ -+.|
T Consensus 3 ~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~----iGGD 78 (305)
T PRK02649 3 KAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIV----LGGD 78 (305)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEE----EeCc
Confidence 46666 23332 3455666677778888775543322210 0111124678777 4788
Q ss_pred HHHHHHHHh--ccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 84 GFKLLEHVG--LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 84 G~elLe~I~--~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
| .+|+..+ ...++||+-+. .|-..||.- +..+++...+..+++..
T Consensus 79 G-TlL~aar~~~~~~iPilGIN-------------~G~lGFLt~-~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 79 G-TVLSAARQLAPCGIPLLTIN-------------TGHLGFLTE-AYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred H-HHHHHHHHhcCCCCcEEEEe-------------CCCCccccc-CCHHHHHHHHHHHHcCC
Confidence 8 3444443 23578888663 366678864 67889999999887643
No 442
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=23.62 E-value=6.4e+02 Score=27.63 Aligned_cols=91 Identities=14% Similarity=0.010 Sum_probs=56.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHh---CC--CeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 005719 25 RVLAVDDDPTCLKVLENFLRA---CQ--YEV-TVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLP 98 (681)
Q Consensus 25 RVLIVDDD~~~r~iL~~~Le~---~g--y~V-t~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlP 98 (681)
-|||-|.+-...-.+.+.+++ .. ..| +.+.+..++.+.+.. .+|+|++|= |+- -++-+.+.......
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~a---GaDiImLDn-msp---e~l~~av~~~~~~~ 250 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALAH---GAQSVLLDN-FTL---DMMREAVRVTAGRA 250 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHc---CCCEEEECC-CCH---HHHHHHHHhhcCCe
Confidence 477777776555444444432 21 223 357789999998863 489999994 322 23333332222234
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEE
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDY 122 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DY 122 (681)
+|-.++.-+.+.+.+....|++..
T Consensus 251 ~lEaSGGIt~~ni~~yA~tGVD~I 274 (294)
T PRK06978 251 VLEVSGGVNFDTVRAFAETGVDRI 274 (294)
T ss_pred EEEEECCCCHHHHHHHHhcCCCEE
Confidence 667777788888888888888654
No 443
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=23.59 E-value=3.3e+02 Score=29.11 Aligned_cols=102 Identities=11% Similarity=0.130 Sum_probs=60.4
Q ss_pred CcE-EEEEeCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCCCCH---------HHHHH
Q 005719 23 GMR-VLAVDDDPTCLKVLENFLRACQYEVTVT---NQAVTALKMLRENRNNFDLVISDVHMPDMDG---------FKLLE 89 (681)
Q Consensus 23 GmR-VLIVDDD~~~r~iL~~~Le~~gy~Vt~a---s~a~eALe~L~e~~~~pDLVLlDV~MPdmDG---------~elLe 89 (681)
|.. |+|.|-.......+...+++.|...... ++..+-++.+.+....|=.++. .++..| .++++
T Consensus 119 GvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS---~~GvTG~~~~~~~~~~~~i~ 195 (263)
T CHL00200 119 GVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVS---TTGVTGLKTELDKKLKKLIE 195 (263)
T ss_pred CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEc---CCCCCCCCccccHHHHHHHH
Confidence 444 4444545455556666677777654432 2334555555544333333332 344333 34556
Q ss_pred HHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCC
Q 005719 90 HVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPV 127 (681)
Q Consensus 90 ~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPv 127 (681)
+++...++||++=-+-.+.+.+.+....||+.+++--.
T Consensus 196 ~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSa 233 (263)
T CHL00200 196 TIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSA 233 (263)
T ss_pred HHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHH
Confidence 66666788988744556788999999999999988763
No 444
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=23.57 E-value=4.1e+02 Score=29.31 Aligned_cols=39 Identities=8% Similarity=0.106 Sum_probs=31.9
Q ss_pred HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEE
Q 005719 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYL 123 (681)
Q Consensus 85 ~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYL 123 (681)
.++.+.|+...++|||......+.+.+.++++.|.+|++
T Consensus 264 ~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V 302 (337)
T PRK13523 264 VPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLI 302 (337)
T ss_pred HHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChH
Confidence 467777877778999998888889999999999976663
No 445
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=23.48 E-value=5e+02 Score=27.06 Aligned_cols=98 Identities=10% Similarity=0.050 Sum_probs=59.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEE-EC--CHHHHHHHHHhcCCCceEEEEeCCCCC--------CCHHHHHHHHhcc
Q 005719 26 VLAVDDDPTCLKVLENFLRACQYEVTV-TN--QAVTALKMLRENRNNFDLVISDVHMPD--------MDGFKLLEHVGLE 94 (681)
Q Consensus 26 VLIVDDD~~~r~iL~~~Le~~gy~Vt~-as--~a~eALe~L~e~~~~pDLVLlDV~MPd--------mDG~elLe~I~~~ 94 (681)
|++.|-.......+...+++.|..... +. +..+.++.+.... .+.|++=-.+|. .+..+.+++++..
T Consensus 108 iiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~--~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~ 185 (242)
T cd04724 108 LIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELA--SGFIYYVSRTGVTGARTELPDDLKELIKRIRKY 185 (242)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhC--CCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc
Confidence 444455555555566666777765443 22 2344455554322 343332112332 1234667777766
Q ss_pred CCCcEEEEEcCCChHHHHHHHhcCCcEEEeCC
Q 005719 95 MDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126 (681)
Q Consensus 95 ~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKP 126 (681)
.++||++=.+-...+.+.++.++ |+.+++-.
T Consensus 186 ~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGS 216 (242)
T cd04724 186 TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGS 216 (242)
T ss_pred CCCcEEEEccCCCHHHHHHHHcc-CCEEEECH
Confidence 78999987777778888888888 99998864
No 446
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.43 E-value=4.5e+02 Score=28.50 Aligned_cols=100 Identities=16% Similarity=0.294 Sum_probs=53.9
Q ss_pred EEEEEe--CCH---HHHHHHHHHHHhCCCeEEEECCHHHHH--HHH-HhcCCCceEEEEeCCCCCCCHH--HHHHHHhcc
Q 005719 25 RVLAVD--DDP---TCLKVLENFLRACQYEVTVTNQAVTAL--KML-RENRNNFDLVISDVHMPDMDGF--KLLEHVGLE 94 (681)
Q Consensus 25 RVLIVD--DD~---~~r~iL~~~Le~~gy~Vt~as~a~eAL--e~L-~e~~~~pDLVLlDV~MPdmDG~--elLe~I~~~ 94 (681)
||++|- ... .....+.+.|++.|++|.+.....+.. ..+ ......+|+||+ -+.||- .+++.+ ..
T Consensus 5 kv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGT~l~~~~~~-~~ 79 (305)
T PRK02645 5 QVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIV----LGGDGTVLAAARHL-AP 79 (305)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEE----ECCcHHHHHHHHHh-cc
Confidence 477762 222 334455666777799987655432221 111 111234788887 477884 333333 23
Q ss_pred CCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCC-hHHHHHHHHHHHHH
Q 005719 95 MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVR-IEELKNIWQHVIRR 142 (681)
Q Consensus 95 ~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs-~eEL~~i~q~Vlrr 142 (681)
.++||+.+.. .|-..||.-... .++ ...++.+++.
T Consensus 80 ~~~pv~gin~------------~G~lGFL~~~~~~~~~-~~~l~~i~~g 115 (305)
T PRK02645 80 HDIPILSVNV------------GGHLGFLTHPRDLLQD-ESVWDRLQED 115 (305)
T ss_pred CCCCEEEEec------------CCcceEecCchhhcch-HHHHHHHHcC
Confidence 5789887754 245678885421 223 5666666543
No 447
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=23.40 E-value=86 Score=32.91 Aligned_cols=63 Identities=22% Similarity=0.316 Sum_probs=48.9
Q ss_pred cEEEEEe-CCHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH
Q 005719 24 MRVLAVD-DDPTCLKVLENFLRACQYEVT---VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFK 86 (681)
Q Consensus 24 mRVLIVD-DD~~~r~iL~~~Le~~gy~Vt---~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~e 86 (681)
.+|=.|. ........|.+-|.++||+|. +++....|...+++++-.|-+++-|--|++.+|++
T Consensus 40 ~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~dF~gid 106 (262)
T KOG3040|consen 40 VKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALEDFDGID 106 (262)
T ss_pred ceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEcccchhhCCCcc
Confidence 4555554 344556678888999999886 67788889999998888899999998888888754
No 448
>PRK13561 putative diguanylate cyclase; Provisional
Probab=23.37 E-value=5.7e+02 Score=30.05 Aligned_cols=98 Identities=15% Similarity=0.182 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhCCCeEEE--ECCHHHHHHHHHh-cCCCceEEEEeCC----CCCCCHHHHHHHH---hccCCCcEEEEEc
Q 005719 35 CLKVLENFLRACQYEVTV--TNQAVTALKMLRE-NRNNFDLVISDVH----MPDMDGFKLLEHV---GLEMDLPVIMLSA 104 (681)
Q Consensus 35 ~r~iL~~~Le~~gy~Vt~--as~a~eALe~L~e-~~~~pDLVLlDV~----MPdmDG~elLe~I---~~~~dlPVImLSa 104 (681)
....+...|++.|+.+.. +..+...+..|.. ..-++|.|-+|-. ++. + -.+++.+ ....++.|| ...
T Consensus 535 ~~~~~~~~l~~~G~~i~lddfG~g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~-~-~~~v~~i~~~a~~l~i~vi-Aeg 611 (651)
T PRK13561 535 AAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPE-D-DSMVAAIIMLAQSLNLQVI-AEG 611 (651)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCcccHHHHhhcCCCCCcEEEECHHHHhcCCC-C-HHHHHHHHHHHHHCCCcEE-Eec
Confidence 334445667778888776 4455556666653 1235899998853 332 2 2455554 234566655 456
Q ss_pred CCChHHHHHHHhcCCcE----EEeCCCChHHHHHH
Q 005719 105 YGDTKLVMKGITHGACD----YLLKPVRIEELKNI 135 (681)
Q Consensus 105 ~~d~e~v~kAl~~GA~D----YLlKPvs~eEL~~i 135 (681)
.++.+......+.|++. |+.||...+++.+.
T Consensus 612 VE~~~~~~~l~~~g~d~~QG~~~~~P~~~~~~~~~ 646 (651)
T PRK13561 612 VETEAQRDWLLKAGVGIAQGFLFARALPIEIFEER 646 (651)
T ss_pred CCCHHHHHHHHhcCCCEEeCCcccCCCCHHHHHHH
Confidence 67777788888899874 68999999998654
No 449
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=23.25 E-value=8.7e+02 Score=27.55 Aligned_cols=117 Identities=14% Similarity=0.217 Sum_probs=62.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--eEEEE-------------------CCHHHHHHHHHhcCCCceEEEEeCCCCC
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQY--EVTVT-------------------NQAVTALKMLRENRNNFDLVISDVHMPD 81 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy--~Vt~a-------------------s~a~eALe~L~e~~~~pDLVLlDV~MPd 81 (681)
-||||||..-...-.+..++.+. ++ .|..+ .+..+.++++++. .+|+|+....-|-
T Consensus 4 ~~kvLviG~g~rehal~~~~~~~-~~~~~~~~~pgn~g~~~~~~~~~~~~~~~d~~~l~~~a~~~--~iD~Vv~g~E~~l 80 (426)
T PRK13789 4 KLKVLLIGSGGRESAIAFALRKS-NLLSELKVFPGNGGFPDDELLPADSFSILDKSSVQSFLKSN--PFDLIVVGPEDPL 80 (426)
T ss_pred CcEEEEECCCHHHHHHHHHHHhC-CCCCEEEEECCchHHhccccccccCcCcCCHHHHHHHHHHc--CCCEEEECCchHH
Confidence 38999999887766666555443 32 22211 2333444555543 5999998765544
Q ss_pred CCHH-HHHHHH------------------------hccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCC--------
Q 005719 82 MDGF-KLLEHV------------------------GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVR-------- 128 (681)
Q Consensus 82 mDG~-elLe~I------------------------~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs-------- 128 (681)
..|+ +.++.+ -....+|+.-.....+.+.+.++++.--.-+++||..
T Consensus 81 ~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~~ea~~~~~~~~~PvVVKp~~~~~gkGV~ 160 (426)
T PRK13789 81 VAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEYSSSLSYLESEMLPIVIKADGLAAGKGVT 160 (426)
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEeeCCHHHHHHHHHhcCCCEEEEeCCCCCCCcEE
Confidence 4443 221111 0123455432222233444444443222478899974
Q ss_pred ----hHHHHHHHHHHHHH
Q 005719 129 ----IEELKNIWQHVIRR 142 (681)
Q Consensus 129 ----~eEL~~i~q~Vlrr 142 (681)
.+++...|+.++..
T Consensus 161 vv~~~eel~~a~~~~~~~ 178 (426)
T PRK13789 161 VATEKKMAKRALKEIFKD 178 (426)
T ss_pred EECCHHHHHHHHHHHHhh
Confidence 56888888877643
No 450
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=23.23 E-value=6.7e+02 Score=27.38 Aligned_cols=91 Identities=9% Similarity=0.021 Sum_probs=56.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CCC--eE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 005719 25 RVLAVDDDPTCLKVLENFLRA----CQY--EV-TVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDL 97 (681)
Q Consensus 25 RVLIVDDD~~~r~iL~~~Le~----~gy--~V-t~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dl 97 (681)
-|||-|.+-...-.+.+.+++ ..+ .| +.+.+.+++.+++.. .+|+|++|=.-|+ +--++++.++ .-
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~a---gaDiImLDnmspe-~l~~av~~~~---~~ 241 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAA---GADIIMLDNMSLE-QIEQAITLIA---GR 241 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHhc---Cc
Confidence 478877776665445554433 332 23 356788999998863 4899999943222 2222233332 23
Q ss_pred cEEEEEcCCChHHHHHHHhcCCcEE
Q 005719 98 PVIMLSAYGDTKLVMKGITHGACDY 122 (681)
Q Consensus 98 PVImLSa~~d~e~v~kAl~~GA~DY 122 (681)
.+|-.++.-+.+.+......|++..
T Consensus 242 ~~leaSGGI~~~ni~~yA~tGVD~I 266 (290)
T PRK06559 242 SRIECSGNIDMTTISRFRGLAIDYV 266 (290)
T ss_pred eEEEEECCCCHHHHHHHHhcCCCEE
Confidence 4666777788888888888888653
No 451
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=23.23 E-value=8.8e+02 Score=25.44 Aligned_cols=65 Identities=11% Similarity=0.044 Sum_probs=34.1
Q ss_pred HHHHHHHHHhCCCeEEEE-------CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEEc
Q 005719 36 LKVLENFLRACQYEVTVT-------NQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVIMLSA 104 (681)
Q Consensus 36 r~iL~~~Le~~gy~Vt~a-------s~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVImLSa 104 (681)
...++..+++.|.+|+.. .+....+..++. ..+|+|++.. ...+...+++.++. ....++++.+.
T Consensus 158 ~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~--~~~d~i~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~ 230 (345)
T cd06338 158 AEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKA--AGPDAVVVAG--HFPDAVLLVRQMKELGYNPKALYMTV 230 (345)
T ss_pred HHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHh--cCCCEEEECC--cchhHHHHHHHHHHcCCCCCEEEEec
Confidence 344555666667776531 133344444443 3478887644 23356666666643 34555555443
No 452
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=23.22 E-value=5.9e+02 Score=25.19 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=35.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCC--CeEEE-ECCHHHHHHHHHhcCCCceEEEEeC
Q 005719 21 PIGMRVLAVDDDPTCLKVLENFLRACQ--YEVTV-TNQAVTALKMLRENRNNFDLVISDV 77 (681)
Q Consensus 21 P~GmRVLIVDDD~~~r~iL~~~Le~~g--y~Vt~-as~a~eALe~L~e~~~~pDLVLlDV 77 (681)
+.+.+|..||-++...+.+++-++..+ ..+.. ..+..+.+.. ....||+|++..
T Consensus 63 ~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~---~~~~~D~V~~~~ 119 (198)
T PRK00377 63 GETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT---INEKFDRIFIGG 119 (198)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh---cCCCCCEEEECC
Confidence 344689999999999888888877765 24443 3344443332 224699999865
No 453
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=23.16 E-value=3.5e+02 Score=30.11 Aligned_cols=30 Identities=20% Similarity=0.124 Sum_probs=26.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEEC
Q 005719 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTN 54 (681)
Q Consensus 25 RVLIVDDD~~~r~iL~~~Le~~gy~Vt~as 54 (681)
+||||.....+-...+..|+..|+.|+...
T Consensus 78 ~VLIIGGp~AVs~~yE~~Lks~GitV~Rig 107 (337)
T COG2247 78 LVLIIGGPIAVSPNYENALKSLGITVKRIG 107 (337)
T ss_pred eEEEECCCCcCChhHHHHHHhCCcEEEEec
Confidence 699999999999999999999998877654
No 454
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=23.15 E-value=7.8e+02 Score=24.81 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=39.1
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 70 FDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 70 pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
.|++++-... +.-|..+++.+. ..+|||+. ..... .+.+.. ..++.++-+.+++.+.+..++..
T Consensus 269 adi~v~ps~~-e~~~~~~~Ea~a--~g~PvI~~-~~~~~---~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~ 332 (365)
T cd03807 269 LDVFVLSSLS-EGFPNVLLEAMA--CGLPVVAT-DVGDN---AELVGD--TGFLVPPGDPEALAEAIEALLAD 332 (365)
T ss_pred CCEEEeCCcc-ccCCcHHHHHHh--cCCCEEEc-CCCCh---HHHhhc--CCEEeCCCCHHHHHHHHHHHHhC
Confidence 4566654333 334556666653 46888863 32222 222333 56888999999999999888753
No 455
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=23.15 E-value=3e+02 Score=29.84 Aligned_cols=53 Identities=23% Similarity=0.302 Sum_probs=36.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe---E-EEECCHHHHHHHHHhcCCCceEEEEeC
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYE---V-TVTNQAVTALKMLRENRNNFDLVISDV 77 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~---V-t~as~a~eALe~L~e~~~~pDLVLlDV 77 (681)
.+|.-||-....++..++-++-.++. + .++.+.-+.++.++.. ..||+||+|.
T Consensus 147 ~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~-~~fD~IIlDP 203 (286)
T PF10672_consen 147 KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKG-GRFDLIILDP 203 (286)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHT-T-EEEEEE--
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcC-CCCCEEEECC
Confidence 47999999999999999888766542 3 3567888888777644 4799999996
No 456
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=23.11 E-value=4.3e+02 Score=26.39 Aligned_cols=52 Identities=17% Similarity=0.212 Sum_probs=31.1
Q ss_pred CCceEEEEeCCCCCC---C----HHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcC-CcEE
Q 005719 68 NNFDLVISDVHMPDM---D----GFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHG-ACDY 122 (681)
Q Consensus 68 ~~pDLVLlDV~MPdm---D----G~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~G-A~DY 122 (681)
...|.+++|..-+.. . ++++++.+. ..+|+++...- +.+.+.+++..+ ++.+
T Consensus 119 ~~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~PvilaGGI-~~~Nv~~~i~~~~~~gv 178 (203)
T cd00405 119 GEVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILAGGL-TPDNVAEAIRLVRPYGV 178 (203)
T ss_pred ccCCEEEEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEECCC-ChHHHHHHHHhcCCCEE
Confidence 346888888765431 2 345555543 46787766544 566667777766 5443
No 457
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=23.03 E-value=4.3e+02 Score=25.30 Aligned_cols=54 Identities=28% Similarity=0.290 Sum_probs=29.2
Q ss_pred CcEEEEEeCCHHHHH---HHHHHHHhCCCeEEEEC---CHHHHH----HHHHhcCCCceEEEEeCC
Q 005719 23 GMRVLAVDDDPTCLK---VLENFLRACQYEVTVTN---QAVTAL----KMLRENRNNFDLVISDVH 78 (681)
Q Consensus 23 GmRVLIVDDD~~~r~---iL~~~Le~~gy~Vt~as---~a~eAL----e~L~e~~~~pDLVLlDV~ 78 (681)
|.+|++|+-|..... .+..+.+..+..+.... +..+.+ +.+. ...+|+||+|..
T Consensus 28 g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~viiDt~ 91 (173)
T cd03115 28 GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR--EENFDVVIVDTA 91 (173)
T ss_pred CCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH--hCCCCEEEEECc
Confidence 679999998754222 23333444455554432 323222 2222 245899999973
No 458
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=23.03 E-value=4.1e+02 Score=27.90 Aligned_cols=68 Identities=18% Similarity=0.285 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCC-CCH--HHHHHHHhccCCCcEEEEEcCCChHHHHHHH-hcCCcEEEe
Q 005719 56 AVTALKMLRENRNNFDLVISDVHMPD-MDG--FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGI-THGACDYLL 124 (681)
Q Consensus 56 a~eALe~L~e~~~~pDLVLlDV~MPd-mDG--~elLe~I~~~~dlPVImLSa~~d~e~v~kAl-~~GA~DYLl 124 (681)
..+..+.+.+.. .-.+++.|+.--+ +.| +++++.+.....+|||+-..-.+.+.+.+++ ..|++..++
T Consensus 154 ~~e~~~~~~~~g-~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 154 PLELAKEYEALG-AGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred HHHHHHHHHHcC-CCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 445555554332 2358888886443 233 6778888766889999999899999999998 789887543
No 459
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=22.97 E-value=6.2e+02 Score=28.26 Aligned_cols=86 Identities=17% Similarity=0.147 Sum_probs=55.4
Q ss_pred HHHHHHHHhCCCeEEEE--CCHHHHHHHHHhcCCCceEEEEeCCC-----CCCCHHHHHHHHhcc--CCCcEEEEEcCCC
Q 005719 37 KVLENFLRACQYEVTVT--NQAVTALKMLRENRNNFDLVISDVHM-----PDMDGFKLLEHVGLE--MDLPVIMLSAYGD 107 (681)
Q Consensus 37 ~iL~~~Le~~gy~Vt~a--s~a~eALe~L~e~~~~pDLVLlDV~M-----PdmDG~elLe~I~~~--~dlPVImLSa~~d 107 (681)
+.|+.+-+..+..|.+- .+..+|..+.. ...|.|++.=|= .....++.+..|... .++|||+-..-..
T Consensus 211 ~~l~~lr~~~~~PvivKgv~~~~dA~~a~~---~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~ 287 (351)
T cd04737 211 ADIEFIAKISGLPVIVKGIQSPEDADVAIN---AGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRR 287 (351)
T ss_pred HHHHHHHHHhCCcEEEecCCCHHHHHHHHH---cCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCC
Confidence 33444333344455443 56777766664 347888774221 111245667666432 3699999999999
Q ss_pred hHHHHHHHhcCCcEEEeC
Q 005719 108 TKLVMKGITHGACDYLLK 125 (681)
Q Consensus 108 ~e~v~kAl~~GA~DYLlK 125 (681)
...+.+++..||+...+-
T Consensus 288 g~Di~kaLalGA~~V~iG 305 (351)
T cd04737 288 GEHVFKALASGADAVAVG 305 (351)
T ss_pred HHHHHHHHHcCCCEEEEC
Confidence 999999999999987654
No 460
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=22.96 E-value=3.3e+02 Score=28.23 Aligned_cols=73 Identities=7% Similarity=0.104 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhCCCeEEE-ECCHHH---HHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCC
Q 005719 35 CLKVLENFLRACQYEVTV-TNQAVT---ALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGD 107 (681)
Q Consensus 35 ~r~iL~~~Le~~gy~Vt~-as~a~e---ALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d 107 (681)
..+.|+..++.++-.+.+ ++-+.+ .+.++.+....+.+|++|..+.--..+++++.+....++.++++.....
T Consensus 28 ~~e~i~~a~~~~~~~i~vs~SGGKDS~vlL~L~~~~~~~i~vvfiDTG~~~pet~e~~~~~~~~~gl~l~v~~~~~~ 104 (241)
T PRK02090 28 AQERLAWALENFGGRLALVSSFGAEDAVLLHLVAQVDPDIPVIFLDTGYLFPETYRFIDELTERLLLNLKVYRPDAS 104 (241)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCCEEEECCCcc
Confidence 346678888877655544 344444 3444554444678999998886666888888887777888888877644
No 461
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.93 E-value=1.7e+02 Score=31.73 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=44.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCC
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMP 80 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MP 80 (681)
.|-+|+|++....+.+.|..+|...+..|+++..-..-++..- ...|+||.-+--|
T Consensus 151 ~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~~---~~ADIvI~Avgk~ 206 (279)
T PRK14178 151 AGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAEL---RQADILVSAAGKA 206 (279)
T ss_pred CCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHHH---hhCCEEEECCCcc
Confidence 6789999999999999999999988999998876555444332 2379999988544
No 462
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=22.75 E-value=4.1e+02 Score=29.39 Aligned_cols=64 Identities=27% Similarity=0.212 Sum_probs=38.4
Q ss_pred CcEEEEEeCCHH-HHHHHHHHHHhCCCeEEEEC--------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 005719 23 GMRVLAVDDDPT-CLKVLENFLRACQYEVTVTN--------QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHV 91 (681)
Q Consensus 23 GmRVLIVDDD~~-~r~iL~~~Le~~gy~Vt~as--------~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I 91 (681)
+-|+|||-|... ..+.+...|+..+.++.++. ...++++.+++. .+|+||- .-+..-+++.+.+
T Consensus 22 ~~r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~IIa---iGGGS~~D~aK~i 94 (374)
T cd08183 22 GRRVLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNA--GCDVVIA---IGGGSVIDAGKAI 94 (374)
T ss_pred CCcEEEEECCchHHHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhc--CCCEEEE---ecCchHHHHHHHH
Confidence 468998877543 45556677777777665542 234566666543 4888775 3454445555443
No 463
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=22.66 E-value=3.7e+02 Score=29.77 Aligned_cols=94 Identities=14% Similarity=0.227 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHH
Q 005719 35 CLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKG 114 (681)
Q Consensus 35 ~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kA 114 (681)
....|.+..++.|..+.+..-..++++++.+ +++-++=|--.++.-+.+|+.+.. ...|||+=|+-...+.+..|
T Consensus 77 ~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~----~~v~~~KIaS~~~~n~pLL~~~A~-~gkPvilStGmatl~Ei~~A 151 (329)
T TIGR03569 77 DHRELKEYCESKGIEFLSTPFDLESADFLED----LGVPRFKIPSGEITNAPLLKKIAR-FGKPVILSTGMATLEEIEAA 151 (329)
T ss_pred HHHHHHHHHHHhCCcEEEEeCCHHHHHHHHh----cCCCEEEECcccccCHHHHHHHHh-cCCcEEEECCCCCHHHHHHH
Confidence 4456667777778777766666777788863 334455566677888999999854 57899998888877777666
Q ss_pred Hh----cCCc--EEEe------CCCChHHHH
Q 005719 115 IT----HGAC--DYLL------KPVRIEELK 133 (681)
Q Consensus 115 l~----~GA~--DYLl------KPvs~eEL~ 133 (681)
++ .|.. ++++ -|...+++.
T Consensus 152 v~~i~~~G~~~~~i~llhC~s~YP~~~~~~n 182 (329)
T TIGR03569 152 VGVLRDAGTPDSNITLLHCTTEYPAPFEDVN 182 (329)
T ss_pred HHHHHHcCCCcCcEEEEEECCCCCCCcccCC
Confidence 53 4543 2544 466666553
No 464
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=22.62 E-value=3.8e+02 Score=30.06 Aligned_cols=100 Identities=20% Similarity=0.245 Sum_probs=63.6
Q ss_pred CCcEEEEEeCC--------HH-HHHHHHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CC
Q 005719 22 IGMRVLAVDDD--------PT-CLKVLENFLRACQYEVTV--TNQAVTALKMLRENRNNFDLVISDVHMPD-------MD 83 (681)
Q Consensus 22 ~GmRVLIVDDD--------~~-~r~iL~~~Le~~gy~Vt~--as~a~eALe~L~e~~~~pDLVLlDV~MPd-------mD 83 (681)
.|..+++|+-. .. .-..+.+.+++.+..|.. +.+...|.++++ ...|.|++.+. |+ ..
T Consensus 153 aGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~---aGAD~V~VG~G-~Gs~~~t~~~~ 228 (368)
T PRK08649 153 AGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIVGGCVTYTTALHLMR---TGAAGVLVGIG-PGAACTSRGVL 228 (368)
T ss_pred CCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHH---cCCCEEEECCC-CCcCCCCcccC
Confidence 35677888421 00 123466677776766664 567778888775 35899987643 22 11
Q ss_pred --HHHHHHHH---h---c-------cCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 84 --GFKLLEHV---G---L-------EMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 84 --G~elLe~I---~---~-------~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
|+-.+..| . . ..++|||.-..-.....+.+|+.+||+....-
T Consensus 229 g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~G 285 (368)
T PRK08649 229 GIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLG 285 (368)
T ss_pred CCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeeccc
Confidence 22222222 1 0 12689999999999999999999999987653
No 465
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=22.57 E-value=1.9e+02 Score=29.38 Aligned_cols=44 Identities=23% Similarity=0.206 Sum_probs=35.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQY--EVTVTNQAVTALKMLRENRNNFDLVIS 75 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy--~Vt~as~a~eALe~L~e~~~~pDLVLl 75 (681)
|||.|||----....+...|++.|+ ++....+..+. ..+|.||+
T Consensus 2 ~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~l--------~~~d~lIl 47 (209)
T PRK13146 2 MTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDAV--------AAADRVVL 47 (209)
T ss_pred CeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHHh--------cCCCEEEE
Confidence 7999999888788889999999998 77777766552 24788888
No 466
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=22.42 E-value=4.9e+02 Score=28.34 Aligned_cols=74 Identities=15% Similarity=0.242 Sum_probs=45.4
Q ss_pred cEEEEEeCCHHHH---HHHHHHHHhCCCeEEEEC-------CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 005719 24 MRVLAVDDDPTCL---KVLENFLRACQYEVTVTN-------QAV---TALKMLRENRNNFDLVISDVHMPDMDGFKLLEH 90 (681)
Q Consensus 24 mRVLIVDDD~~~r---~iL~~~Le~~gy~Vt~as-------~a~---eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~ 90 (681)
-|||||-|..... +.+.+.|+..++++.++. +.. ++++.+++ .+|+||. .-+..-.++.+.
T Consensus 25 ~kvlivtd~~~~~~~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~---~~d~IIa---iGGGsv~D~aK~ 98 (332)
T cd08549 25 SKIMIVCGNNTYKVAGKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK---DTEFLLG---IGSGTIIDLVKF 98 (332)
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc---CCCEEEE---ECCcHHHHHHHH
Confidence 4888888875543 556677777776555432 222 34444443 5788775 455566677776
Q ss_pred HhccCCCcEEEEE
Q 005719 91 VGLEMDLPVIMLS 103 (681)
Q Consensus 91 I~~~~dlPVImLS 103 (681)
+.....+|+|.+-
T Consensus 99 iA~~~gip~I~VP 111 (332)
T cd08549 99 VSFKVGKPFISVP 111 (332)
T ss_pred HHHHcCCCEEEeC
Confidence 6544578887774
No 467
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=22.37 E-value=3e+02 Score=27.34 Aligned_cols=57 Identities=26% Similarity=0.282 Sum_probs=41.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHH-HHHHhcCCCceEEEEeCCCCC
Q 005719 21 PIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTAL-KMLRENRNNFDLVISDVHMPD 81 (681)
Q Consensus 21 P~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eAL-e~L~e~~~~pDLVLlDV~MPd 81 (681)
..|-+||||---......+.++|.+.|..|+++..-.+.+ +.+. ..|+||.-+.-|.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~----~aDiVIsat~~~~ 99 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHTK----QADIVIVAVGKPG 99 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHHh----hCCEEEEcCCCCc
Confidence 3678999999988888888888888788887776544333 3333 3799998876664
No 468
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=22.35 E-value=1.9e+02 Score=34.85 Aligned_cols=74 Identities=18% Similarity=0.379 Sum_probs=48.7
Q ss_pred CceEEEEe-CCCCCCCHHHH-HHHHhccC-CCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 69 NFDLVISD-VHMPDMDGFKL-LEHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 69 ~pDLVLlD-V~MPdmDG~el-Le~I~~~~-dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
.+.|+|+| ++|-....+.. |+.|..-+ .+.+|+.|. +...+...+..-+.-|-.||+..+++...+.++++...
T Consensus 119 ~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt--~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~ 195 (647)
T PRK07994 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT--DPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ 195 (647)
T ss_pred CCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecC--CccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC
Confidence 46787777 66665555554 45454322 344555443 34455556666678899999999999999998886543
No 469
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=22.30 E-value=1.3e+02 Score=31.79 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=34.8
Q ss_pred EEEEeCCHHHHH----------HHHHHHHhCCCeEEEEC--CHHH---HHHHHHhcCCCceEEEEeCC
Q 005719 26 VLAVDDDPTCLK----------VLENFLRACQYEVTVTN--QAVT---ALKMLRENRNNFDLVISDVH 78 (681)
Q Consensus 26 VLIVDDD~~~r~----------iL~~~Le~~gy~Vt~as--~a~e---ALe~L~e~~~~pDLVLlDV~ 78 (681)
|.|||.+...+. -|...++.+|++|+.+. +..+ |++.+......|.+||++..
T Consensus 174 iaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~~~~rP~~IIa~Tv 241 (243)
T COG3959 174 IAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKGSKGRPTVIIAKTV 241 (243)
T ss_pred EEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhccCCCCeEEEEecc
Confidence 777887765543 47778888999999886 3444 34433332336889988764
No 470
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=22.29 E-value=1.3e+02 Score=35.33 Aligned_cols=77 Identities=19% Similarity=0.244 Sum_probs=48.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH---HHHHHHHHhcCCCceEEEEeCC--CCCCCH--HHHHHHHhccCC
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQA---VTALKMLRENRNNFDLVISDVH--MPDMDG--FKLLEHVGLEMD 96 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a---~eALe~L~e~~~~pDLVLlDV~--MPdmDG--~elLe~I~~~~d 96 (681)
+||||||....+-..|..+|+.+|+.++++.+. ...++.+.. ..||.||+.-- -|...+ .++++.+ ...
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~--~~~~~IIlSpGPg~p~d~~~~~~i~~~~--~~~ 77 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLAT--MSNPVLMLSPGPGVPSEAGCMPELLTRL--RGK 77 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHh--cCcCEEEEcCCCCChhhCCCCHHHHHHH--hcC
Confidence 589999999999999999999999988887642 112333332 23667776432 121111 2333333 246
Q ss_pred CcEEEEEc
Q 005719 97 LPVIMLSA 104 (681)
Q Consensus 97 lPVImLSa 104 (681)
+||+-++-
T Consensus 78 iPILGICl 85 (531)
T PRK09522 78 LPIIGICL 85 (531)
T ss_pred CCEEEEcH
Confidence 89988874
No 471
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=22.18 E-value=4.3e+02 Score=29.28 Aligned_cols=63 Identities=10% Similarity=0.180 Sum_probs=38.5
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCCeEEEECC---------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 005719 24 MRVLAVDDDPTC----LKVLENFLRACQYEVTVTNQ---------AVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEH 90 (681)
Q Consensus 24 mRVLIVDDD~~~----r~iL~~~Le~~gy~Vt~as~---------a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~ 90 (681)
-|||||-|.... .+.++..|++.+.++.++.. ..++.+.+++. .+|+||- .-+..-+++.|.
T Consensus 30 ~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~Iia---iGGGSviD~aKa 104 (379)
T TIGR02638 30 KKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKAS--GADYLIA---IGGGSPIDTAKA 104 (379)
T ss_pred CEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhc--CCCEEEE---eCChHHHHHHHH
Confidence 489999876532 34567778777777766532 23455556543 4788874 345555555554
Q ss_pred H
Q 005719 91 V 91 (681)
Q Consensus 91 I 91 (681)
+
T Consensus 105 i 105 (379)
T TIGR02638 105 I 105 (379)
T ss_pred H
Confidence 3
No 472
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=22.13 E-value=4.4e+02 Score=29.18 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=38.5
Q ss_pred ceEEEEeCCCCCCC-HHHHHHHHhccC-CCcEEEEEcCCChHHHHHHHhcCCcEEE
Q 005719 70 FDLVISDVHMPDMD-GFKLLEHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACDYL 123 (681)
Q Consensus 70 pDLVLlDV~MPdmD-G~elLe~I~~~~-dlPVImLSa~~d~e~v~kAl~~GA~DYL 123 (681)
+|+|.+|+..+... -.++++.|+... ++|||+ ......+.+..++++||+..+
T Consensus 112 ~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~-g~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 112 PEYITIDIAHGHSDSVINMIQHIKKHLPETFVIA-GNVGTPEAVRELENAGADATK 166 (326)
T ss_pred CCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEE-EecCCHHHHHHHHHcCcCEEE
Confidence 59999999887644 456788886543 466554 233468889999999998865
No 473
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=22.12 E-value=3.4e+02 Score=28.47 Aligned_cols=68 Identities=16% Similarity=0.262 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCC-CH--HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhc-----C-CcEEEe
Q 005719 56 AVTALKMLRENRNNFDLVISDVHMPDM-DG--FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITH-----G-ACDYLL 124 (681)
Q Consensus 56 a~eALe~L~e~~~~pDLVLlDV~MPdm-DG--~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~-----G-A~DYLl 124 (681)
..+.++.+... ..-.+|++|+.--++ .| +++++.+....++|||+-..-.+.+.+.++.+. | +...|+
T Consensus 146 ~~e~~~~~~~~-g~~~ii~tdI~rdGt~~G~d~el~~~l~~~~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gviv 222 (241)
T PRK14114 146 PVSLLKRLKEY-GLEEIVHTEIEKDGTLQEHDFSLTRKIAIEAEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIV 222 (241)
T ss_pred HHHHHHHHHhc-CCCEEEEEeechhhcCCCcCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEE
Confidence 34555555432 223799999977664 44 577888876678999999988999999888875 5 776654
No 474
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=22.08 E-value=2.6e+02 Score=25.11 Aligned_cols=76 Identities=11% Similarity=0.087 Sum_probs=43.1
Q ss_pred cEEEEEeCC----HHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 005719 24 MRVLAVDDD----PTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPV 99 (681)
Q Consensus 24 mRVLIVDDD----~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPV 99 (681)
.+||++=.. ......+++.+++.|+++.+.......+... ...+|+||+-.+.-. -++-++.+....++||
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~---~~~~Dvill~pqi~~--~~~~i~~~~~~~~ipv 78 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEK---LDDADVVLLAPQVAY--MLPDLKKETDKKGIPV 78 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhh---cCCCCEEEECchHHH--HHHHHHHHhhhcCCCE
Confidence 466666322 2344567777777788776544333333222 235899999654322 3334444444567899
Q ss_pred EEEEc
Q 005719 100 IMLSA 104 (681)
Q Consensus 100 ImLSa 104 (681)
.++..
T Consensus 79 ~~I~~ 83 (95)
T TIGR00853 79 EVING 83 (95)
T ss_pred EEeCh
Confidence 88764
No 475
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=21.99 E-value=5.3e+02 Score=28.73 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=32.1
Q ss_pred HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEE
Q 005719 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYL 123 (681)
Q Consensus 85 ~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYL 123 (681)
+++++.++...++|||......+.+.+.++++.|.+|++
T Consensus 278 ~~~~~~ik~~~~~pvi~~G~i~~~~~~~~~l~~g~~D~V 316 (370)
T cd02929 278 EPYIKFVKQVTSKPVVGVGRFTSPDKMVEVVKSGILDLI 316 (370)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHcCCCCee
Confidence 566777777778999998888889999999999977764
No 476
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.97 E-value=2.5e+02 Score=34.26 Aligned_cols=74 Identities=14% Similarity=0.321 Sum_probs=47.5
Q ss_pred CceEEEEe-CCCCCCCHHHHHHH-Hhcc-CCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 69 NFDLVISD-VHMPDMDGFKLLEH-VGLE-MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 69 ~pDLVLlD-V~MPdmDG~elLe~-I~~~-~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
.+.++|+| ++|-....+..+.+ |... ..+.+|+.+.. ...+...+..-+.-|-.||++.+++...+++++.+..
T Consensus 118 k~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd--~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg 194 (702)
T PRK14960 118 RFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTD--PQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ 194 (702)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECC--hHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC
Confidence 46788887 67666556655444 4432 23556665532 3333344445556788899999999999999887653
No 477
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=21.92 E-value=2.8e+02 Score=32.45 Aligned_cols=66 Identities=17% Similarity=0.140 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhcc-CCCcEEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 56 AVTALKMLRENRNNFDLVISDVHMPD-MDGFKLLEHVGLE-MDLPVIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 56 a~eALe~L~e~~~~pDLVLlDV~MPd-mDG~elLe~I~~~-~dlPVImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
..+-.+.|-+ ...|+|.+|..-.. ..-++++++|+.. ++++|| +..-...+.+..++++||+...+
T Consensus 249 ~~~r~~~l~~--ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi-~g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 249 DKERLEHLVK--AGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVI-GGNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred HHHHHHHHHH--cCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEE-EecCCCHHHHHHHHHcCcCEEEE
Confidence 3343444433 35899999994211 1124778888654 456655 34456678899999999998754
No 478
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=21.92 E-value=5e+02 Score=27.73 Aligned_cols=91 Identities=20% Similarity=0.219 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHhC-CCeEEE------ECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhccCCCcEEEE
Q 005719 31 DDPTCLKVLENFLRAC-QYEVTV------TNQAVTALKMLRENRNNFDLVISDVHMPD-MDGFKLLEHVGLEMDLPVIML 102 (681)
Q Consensus 31 DD~~~r~iL~~~Le~~-gy~Vt~------as~a~eALe~L~e~~~~pDLVLlDV~MPd-mDG~elLe~I~~~~dlPVImL 102 (681)
|.....+.++++++.. +..|+. +.+..+|++.|.+. .++=||+.=.-+. .+|++.|+.+.....-.+||.
T Consensus 98 dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~l--G~~rILTSGg~~~a~~g~~~L~~lv~~a~~~~Im~ 175 (248)
T PRK11572 98 DGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADL--GVARILTSGQQQDAEQGLSLIMELIAASDGPIIMA 175 (248)
T ss_pred CCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHc--CCCEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 4456667777777665 455553 35778889888754 4888888766554 688999988743222345766
Q ss_pred EcCCChHHHHHHHhcCCcEEE
Q 005719 103 SAYGDTKLVMKGITHGACDYL 123 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~DYL 123 (681)
.+--..+.+.+..+.|+..|-
T Consensus 176 GgGV~~~Nv~~l~~tG~~~~H 196 (248)
T PRK11572 176 GAGVRLSNLHKFLDAGVREVH 196 (248)
T ss_pred CCCCCHHHHHHHHHcCCCEEe
Confidence 666666666666677877775
No 479
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.77 E-value=5.5e+02 Score=27.88 Aligned_cols=100 Identities=19% Similarity=0.264 Sum_probs=58.4
Q ss_pred cEEEEE--eCCHHH---HHHHHHHHHhCCCeEEEECCHHH---HHH-------H--HHhcCCCceEEEEeCCCCCCCHHH
Q 005719 24 MRVLAV--DDDPTC---LKVLENFLRACQYEVTVTNQAVT---ALK-------M--LRENRNNFDLVISDVHMPDMDGFK 86 (681)
Q Consensus 24 mRVLIV--DDD~~~---r~iL~~~Le~~gy~Vt~as~a~e---ALe-------~--L~e~~~~pDLVLlDV~MPdmDG~e 86 (681)
.||+|+ -+.+.. ...|.++|++.|+.|.+...... ++. . .......+|+||+ -+.||-
T Consensus 6 ~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGGDGT- 80 (296)
T PRK04539 6 HNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAV----LGGDGT- 80 (296)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEE----ECCcHH-
Confidence 358887 233333 34455566677888876432111 110 0 0111124688777 478884
Q ss_pred HHHHHh--ccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 87 LLEHVG--LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 87 lLe~I~--~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
+|+..+ ...++||+-+- .|-..||. .+..+++...+..+++.
T Consensus 81 ~L~aa~~~~~~~~PilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 81 FLSVAREIAPRAVPIIGIN-------------QGHLGFLT-QIPREYMTDKLLPVLEG 124 (296)
T ss_pred HHHHHHHhcccCCCEEEEe-------------cCCCeEee-ccCHHHHHHHHHHHHcC
Confidence 333332 23578988664 46678887 48899999999888754
No 480
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=21.75 E-value=7.5e+02 Score=26.88 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=32.4
Q ss_pred HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEE
Q 005719 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYL 123 (681)
Q Consensus 85 ~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYL 123 (681)
.++++.|+...++|||..-...+.+.+.++++.|.+|++
T Consensus 279 ~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V 317 (336)
T cd02932 279 VPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLV 317 (336)
T ss_pred HHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCee
Confidence 467777876678999988888889999999999987775
No 481
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=21.74 E-value=3.8e+02 Score=28.65 Aligned_cols=77 Identities=18% Similarity=0.146 Sum_probs=51.9
Q ss_pred cEEEEEeCCHHH-HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCC--CC-----CCHHHHHHHHhccC
Q 005719 24 MRVLAVDDDPTC-LKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHM--PD-----MDGFKLLEHVGLEM 95 (681)
Q Consensus 24 mRVLIVDDD~~~-r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~M--Pd-----mDG~elLe~I~~~~ 95 (681)
.+|+|+|..|.. ...+.+.|...|..|+...+..-+.-+ . .+|.||+..+- .+ .-|--.+..+....
T Consensus 110 ~~V~v~ESrP~~eG~~~a~~L~~~GI~vtli~Dsa~~~~m-~----~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~ 184 (253)
T PRK06372 110 KSVYILESRPMLEGIDMAKLLVKSGIDVVLLTDASMCEAV-L----NVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYL 184 (253)
T ss_pred CEEEEecCCCchHHHHHHHHHHHCCCCEEEEehhHHHHHH-H----hCCEEEECccEEecCCCEeehhhHHHHHHHHHHc
Confidence 489999988863 356667777789999887766444322 2 27888886654 22 23445555556778
Q ss_pred CCcEEEEEcC
Q 005719 96 DLPVIMLSAY 105 (681)
Q Consensus 96 dlPVImLSa~ 105 (681)
++||++++..
T Consensus 185 ~vPv~V~~~s 194 (253)
T PRK06372 185 KKPFYSLTIS 194 (253)
T ss_pred CCCEEEEeec
Confidence 9999997764
No 482
>PRK10867 signal recognition particle protein; Provisional
Probab=21.71 E-value=7.4e+02 Score=28.47 Aligned_cols=54 Identities=26% Similarity=0.278 Sum_probs=31.7
Q ss_pred CcEEEEEeCCHHHH---HHHHHHHHhCCCeEEEEC---CHHH----HHHHHHhcCCCceEEEEeCC
Q 005719 23 GMRVLAVDDDPTCL---KVLENFLRACQYEVTVTN---QAVT----ALKMLRENRNNFDLVISDVH 78 (681)
Q Consensus 23 GmRVLIVDDD~~~r---~iL~~~Le~~gy~Vt~as---~a~e----ALe~L~e~~~~pDLVLlDV~ 78 (681)
|.+|++|+-|..-. +.|+.+.+..+..+.... +..+ +++..+ ...+|+||+|.-
T Consensus 129 G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~--~~~~DvVIIDTa 192 (433)
T PRK10867 129 KKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAK--ENGYDVVIVDTA 192 (433)
T ss_pred CCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC
Confidence 67899999885332 234444556666655442 3332 333332 235899999983
No 483
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=21.71 E-value=6.7e+02 Score=26.32 Aligned_cols=38 Identities=16% Similarity=0.362 Sum_probs=30.4
Q ss_pred HHHHHHHhccC--CCcEEEEEcCCChHHHHHHHhcCCcEE
Q 005719 85 FKLLEHVGLEM--DLPVIMLSAYGDTKLVMKGITHGACDY 122 (681)
Q Consensus 85 ~elLe~I~~~~--dlPVImLSa~~d~e~v~kAl~~GA~DY 122 (681)
++.++.++... ++|||....-.+.+.+.+++..||+..
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V 269 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAV 269 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHh
Confidence 45566665444 799999999999999999999998754
No 484
>PRK01362 putative translaldolase; Provisional
Probab=21.69 E-value=6.3e+02 Score=26.18 Aligned_cols=81 Identities=19% Similarity=0.098 Sum_probs=47.4
Q ss_pred HHHhCCCeE--EEECCHHHHHHHHHhcCCCceEEEEeC---CCCCCCHHHHHHHHh---ccCC-CcEEEEEcCCChHHHH
Q 005719 42 FLRACQYEV--TVTNQAVTALKMLRENRNNFDLVISDV---HMPDMDGFKLLEHVG---LEMD-LPVIMLSAYGDTKLVM 112 (681)
Q Consensus 42 ~Le~~gy~V--t~as~a~eALe~L~e~~~~pDLVLlDV---~MPdmDG~elLe~I~---~~~d-lPVImLSa~~d~e~v~ 112 (681)
.|.+.|..| +.+.+...|+...... .+.|-.=+ .-.+.||+++++.+. .... -.-|+..+..+...+.
T Consensus 96 ~L~~~Gi~v~~T~vfs~~Qa~~Aa~aG---a~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~ 172 (214)
T PRK01362 96 ALSKEGIKTNVTLIFSANQALLAAKAG---ATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIAASVRHPMHVL 172 (214)
T ss_pred HHHHCCCceEEeeecCHHHHHHHHhcC---CcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHH
Confidence 344445543 4556666666666532 33322111 123578999888763 1222 2455666777889999
Q ss_pred HHHhcCCcEEEeC
Q 005719 113 KGITHGACDYLLK 125 (681)
Q Consensus 113 kAl~~GA~DYLlK 125 (681)
++...|++.+-+-
T Consensus 173 ~~~~~G~d~iTi~ 185 (214)
T PRK01362 173 EAALAGADIATIP 185 (214)
T ss_pred HHHHcCCCEEecC
Confidence 9999999844333
No 485
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=21.55 E-value=3.4e+02 Score=29.79 Aligned_cols=63 Identities=17% Similarity=0.260 Sum_probs=40.5
Q ss_pred CCCCCCCCCCcE--EEEEeCCH-------HHHHHHHHHHHhCCCeEEEE---CCHHHHH-HHHHhc-CCCceEEEEe
Q 005719 14 DGDIDKFPIGMR--VLAVDDDP-------TCLKVLENFLRACQYEVTVT---NQAVTAL-KMLREN-RNNFDLVISD 76 (681)
Q Consensus 14 ~~~~~~fP~GmR--VLIVDDD~-------~~r~iL~~~Le~~gy~Vt~a---s~a~eAL-e~L~e~-~~~pDLVLlD 76 (681)
.+.+..|+...+ ||++.|.. .....|..+|++.|+++..+ .+..+.+ +.+++. ...+|+||+-
T Consensus 146 sg~~~~~~~~~~~aIltvsde~~~G~i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITT 222 (312)
T PRK03604 146 SGHKRRFRPRTSAAVLVLSDSIAAGTKEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITT 222 (312)
T ss_pred CCcccccCCccEEEEEEECCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEEC
Confidence 446777777667 88888843 45567899999999987743 3433333 333332 2357888874
No 486
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=21.51 E-value=5.5e+02 Score=27.97 Aligned_cols=76 Identities=22% Similarity=0.254 Sum_probs=46.0
Q ss_pred cEEEEEeCCHHH---HHHHHHHHHhCCCeEEEEC--------CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH
Q 005719 24 MRVLAVDDDPTC---LKVLENFLRACQYEVTVTN--------QAV---TALKMLRENRNNFDLVISDVHMPDMDGFKLLE 89 (681)
Q Consensus 24 mRVLIVDDD~~~---r~iL~~~Le~~gy~Vt~as--------~a~---eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe 89 (681)
-|+|||-|.... ...+.+.|++.+.++.++. +.. ++++.+++ .+|+||- .-+..-+++.+
T Consensus 24 ~~~livtd~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~---~~d~IIa---IGGGs~~D~aK 97 (348)
T cd08175 24 KKALIVADENTYAAAGKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER---DTDLIIA---VGSGTINDITK 97 (348)
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc---cCCEEEE---ECCcHHHHHHH
Confidence 478888775432 4456677777776543321 222 34444432 5788775 45667778888
Q ss_pred HHhccCCCcEEEEEcC
Q 005719 90 HVGLEMDLPVIMLSAY 105 (681)
Q Consensus 90 ~I~~~~dlPVImLSa~ 105 (681)
.+.....+|+|++-..
T Consensus 98 ~vA~~~~~p~i~IPTT 113 (348)
T cd08175 98 YVSYKTGIPYISVPTA 113 (348)
T ss_pred HHHHhcCCCEEEecCc
Confidence 7765567888887543
No 487
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=21.50 E-value=6.7e+02 Score=25.93 Aligned_cols=66 Identities=15% Similarity=0.093 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeCCC----C--CCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEE
Q 005719 54 NQAVTALKMLRENRNNFDLVISDVHM----P--DMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYL 123 (681)
Q Consensus 54 s~a~eALe~L~e~~~~pDLVLlDV~M----P--dmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYL 123 (681)
.+..++.+... ...|.|.+.--- + .--|+++++++.....+||+.+.+- ..+.+.++++.||+.+-
T Consensus 119 ~s~~~a~~A~~---~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~~~GA~giA 190 (221)
T PRK06512 119 RDRHGAMEIGE---LRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMIEIPCIVQAGS-DLASAVEVAETGAEFVA 190 (221)
T ss_pred CCHHHHHHhhh---cCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhCCCCEEEEeCC-CHHHHHHHHHhCCCEEE
Confidence 35566655433 347888775433 1 1247888888866678999999865 56778888999998873
No 488
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=21.50 E-value=9.2e+02 Score=25.43 Aligned_cols=105 Identities=18% Similarity=0.132 Sum_probs=61.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC--CeEEEE--CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc--CC
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQ--YEVTVT--NQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE--MD 96 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~g--y~Vt~a--s~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~--~d 96 (681)
.+||.||---..........+...+ ..++.+ .+...+.++..+.. +.-+..| ++.+-.. .+
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~--~~~~~~~-----------~~~ll~~~~iD 69 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFG--IAKAYTD-----------LEELLADPDID 69 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcC--CCcccCC-----------HHHHhcCCCCC
Confidence 4788888877665555555565544 344444 23444444443321 1112221 2222222 34
Q ss_pred CcEEEEEcCCChHHHHHHHhcCCcEEEeCCCC--hHHHHHHHHHHH
Q 005719 97 LPVIMLSAYGDTKLVMKGITHGACDYLLKPVR--IEELKNIWQHVI 140 (681)
Q Consensus 97 lPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs--~eEL~~i~q~Vl 140 (681)
+-+|........+.+.+|+++|..=|+-||+. .+|..+++..+-
T Consensus 70 ~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~ 115 (342)
T COG0673 70 AVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELAR 115 (342)
T ss_pred EEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHH
Confidence 44454455567788999999999999999965 577777666553
No 489
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=21.46 E-value=5e+02 Score=23.54 Aligned_cols=66 Identities=21% Similarity=0.172 Sum_probs=0.0
Q ss_pred CCcE-EEEEeCCHHHHHHHHHHHHhCCCeEEEECCH-----HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 005719 22 IGMR-VLAVDDDPTCLKVLENFLRACQYEVTVTNQA-----VTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHV 91 (681)
Q Consensus 22 ~GmR-VLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a-----~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I 91 (681)
.|+. +.+++++....+.+.+++.+.+|.+...+.. .+.++.+.+....|-+|.+ |+.+|-+.++.+
T Consensus 18 aGi~~~~~~~~~ee~~~~l~~l~~~~d~gII~Ite~~~~~i~e~i~~~~~~~~~P~ii~I----P~~~~~~~i~~~ 89 (100)
T PRK02228 18 AGIRKVYEVPDDEKLDEAVEEVLEDDDVGILVMHDDDLEKLPRRLRRTLEESVEPTVVTL----GGGGGSGGLREK 89 (100)
T ss_pred cCCceEEeeCCHHHHHHHHHHHhhCCCEEEEEEehhHhHhhHHHHHHHHhcCCCCEEEEE----CCCccchHHHHH
No 490
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.41 E-value=6.9e+02 Score=26.80 Aligned_cols=98 Identities=26% Similarity=0.409 Sum_probs=55.9
Q ss_pred cEEEEE--eCCHHHHHH---HHHHHHhCCCeEEEECCHHHHHHHH--HhcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 005719 24 MRVLAV--DDDPTCLKV---LENFLRACQYEVTVTNQAVTALKML--RENRNNFDLVISDVHMPDMDGFKLLEHVGLEMD 96 (681)
Q Consensus 24 mRVLIV--DDD~~~r~i---L~~~Le~~gy~Vt~as~a~eALe~L--~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~d 96 (681)
|||.|+ .+.+...+. +.++| ..++++.......+.+... ......+|+||+ -+.||- +|+..+. ..
T Consensus 1 m~i~iv~~~~~~~~~~~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGGDGT-~L~a~~~-~~ 73 (271)
T PRK01185 1 MKVAFVIRKDCKRCIKIAKSIIELL-PPDWEIIYEMEAAKALGMDGLDIEEINADVIIT----IGGDGT-ILRTLQR-AK 73 (271)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHH-hcCCEEEEechhhhhcCcccCcccccCCCEEEE----EcCcHH-HHHHHHH-cC
Confidence 567776 333444433 44444 3477776654433332210 001114677776 478885 4444432 23
Q ss_pred CcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 97 LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 97 lPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
.||+-+- .|-..||. .++.+++...++.+++.
T Consensus 74 ~PilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 74 GPILGIN-------------MGGLGFLT-EIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCEEEEE-------------CCCCccCc-ccCHHHHHHHHHHHHcC
Confidence 5887553 35667887 68889999999988764
No 491
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=21.40 E-value=7.1e+02 Score=29.39 Aligned_cols=99 Identities=18% Similarity=0.271 Sum_probs=57.6
Q ss_pred EEEEE--eCCHHHHHHH---HHHHH-hCCCeEEEECCHHHHHH----------------HHHhcCCCceEEEEeCCCCCC
Q 005719 25 RVLAV--DDDPTCLKVL---ENFLR-ACQYEVTVTNQAVTALK----------------MLRENRNNFDLVISDVHMPDM 82 (681)
Q Consensus 25 RVLIV--DDD~~~r~iL---~~~Le-~~gy~Vt~as~a~eALe----------------~L~e~~~~pDLVLlDV~MPdm 82 (681)
+|+|| -+.+...+.+ ..+|+ ..|+.|.+.......+. .+.+....+|+||+ -+.
T Consensus 196 ~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIs----iGG 271 (508)
T PLN02935 196 TVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVIT----LGG 271 (508)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEEE----ECC
Confidence 57777 3445544444 44454 35677776543222211 00001124677777 478
Q ss_pred CHHHHHHHHh--ccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 83 DGFKLLEHVG--LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 83 DG~elLe~I~--~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
||- +|+..+ ....+||+-+ ..|-.+|| -++..+++...+..+++.
T Consensus 272 DGT-lL~Aar~~~~~~iPILGI-------------N~G~LGFL-t~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 272 DGT-VLWAASMFKGPVPPVVPF-------------SMGSLGFM-TPFHSEQYRDCLDAILKG 318 (508)
T ss_pred cHH-HHHHHHHhccCCCcEEEE-------------eCCCccee-cccCHHHHHHHHHHHHcC
Confidence 884 333332 2356787754 45777887 578999999999998764
No 492
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=21.37 E-value=4.9e+02 Score=28.68 Aligned_cols=75 Identities=20% Similarity=0.264 Sum_probs=37.0
Q ss_pred cEEEEEeCCHHH---HHHHHHHHHhCCCeEEE--E------CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 005719 24 MRVLAVDDDPTC---LKVLENFLRACQYEVTV--T------NQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG 92 (681)
Q Consensus 24 mRVLIVDDD~~~---r~iL~~~Le~~gy~Vt~--a------s~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~ 92 (681)
-|+|||-|.... .+.+...|+..+..+.. + ....++.+.+++. .+|+||- .-+..-+++.+.+.
T Consensus 30 ~~~livtd~~~~~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~--~~d~IIa---vGGGsv~D~aK~iA 104 (366)
T PRK09423 30 KRALVIADEFVLGIVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEEN--GCDVVIG---IGGGKTLDTAKAVA 104 (366)
T ss_pred CEEEEEEChhHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhc--CCCEEEE---ecChHHHHHHHHHH
Confidence 577777765433 23344445544544321 1 1223444444432 3676664 34555566666554
Q ss_pred ccCCCcEEEEE
Q 005719 93 LEMDLPVIMLS 103 (681)
Q Consensus 93 ~~~dlPVImLS 103 (681)
....+|+|.+-
T Consensus 105 ~~~~~p~i~IP 115 (366)
T PRK09423 105 DYLGVPVVIVP 115 (366)
T ss_pred HHcCCCEEEeC
Confidence 33456666654
No 493
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=21.35 E-value=1.2e+02 Score=31.86 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=41.2
Q ss_pred CcEEEEEeCCHHHHH-HHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCC-------HHHHHHHHhcc
Q 005719 23 GMRVLAVDDDPTCLK-VLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD-------GFKLLEHVGLE 94 (681)
Q Consensus 23 GmRVLIVDDD~~~r~-iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmD-------G~elLe~I~~~ 94 (681)
..+|.|+|..|...- .+.+.|.+.|..|+...+..-+.- +. + ..|.||+-...--.| |-..+..+.+.
T Consensus 133 ~~~V~v~es~P~~eG~~~a~~L~~~gi~v~~i~d~~~~~~-m~-~--~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~ 208 (282)
T PF01008_consen 133 KFRVIVLESRPYNEGRLMAKELAEAGIPVTLIPDSAVGYV-MP-R--DVDKVLIGADAVLANGGVVNKVGTLQLALAAKE 208 (282)
T ss_dssp EEEEEEE--TTTTHHHTHHHHHHHTT-EEEEE-GGGHHHH-HH-C--TESEEEEE-SEEETTS-EEEETTHHHHHHHHHH
T ss_pred eEEEEEccCCcchhhhhHHHHhhhcceeEEEEechHHHHH-HH-H--hCCeeEEeeeEEecCCCEeehhhHHHHHHHHHh
Confidence 456777776654322 344455566777777766443322 22 1 378888877653333 34455555566
Q ss_pred CCCcEEEEEcC
Q 005719 95 MDLPVIMLSAY 105 (681)
Q Consensus 95 ~dlPVImLSa~ 105 (681)
.++||++++..
T Consensus 209 ~~vPv~v~~~~ 219 (282)
T PF01008_consen 209 FNVPVYVLAES 219 (282)
T ss_dssp TT-EEEEE--G
T ss_pred hCCCEEEEccc
Confidence 88999998764
No 494
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=21.33 E-value=1.4e+02 Score=32.53 Aligned_cols=59 Identities=25% Similarity=0.276 Sum_probs=48.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCC
Q 005719 21 PIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82 (681)
Q Consensus 21 P~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdm 82 (681)
..|.+|.||.....+.+-|..+|...++.|++|..-..-+..+-. ..|+|+.-+.-|.+
T Consensus 154 l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~~l~~~~k---~ADIvv~AvG~p~~ 212 (283)
T COG0190 154 LRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLASITK---NADIVVVAVGKPHF 212 (283)
T ss_pred CCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCCCHHHHhh---hCCEEEEecCCccc
Confidence 368899999999999999999999999999999977654444432 26999999988764
No 495
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.32 E-value=4.9e+02 Score=25.96 Aligned_cols=64 Identities=16% Similarity=0.186 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCeEEEECCH------HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEc
Q 005719 35 CLKVLENFLRACQYEVTVTNQA------VTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSA 104 (681)
Q Consensus 35 ~r~iL~~~Le~~gy~Vt~as~a------~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa 104 (681)
....+++.+++.||.+.+.... .++++.+... .+|.||+....+. . ..++.+. ..++|||++-.
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~~dgiii~~~~~~--~-~~~~~~~-~~~ipvV~i~~ 86 (270)
T cd06296 17 VLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSAR--RTDGVILVTPELT--S-AQRAALR-RTGIPFVVVDP 86 (270)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHc--CCCEEEEecCCCC--h-HHHHHHh-cCCCCEEEEec
Confidence 3445666677789998876532 2345555443 4897776543333 2 3355552 35789998854
No 496
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=21.31 E-value=5.8e+02 Score=30.20 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=51.2
Q ss_pred ceEEEEeCCCCC-CCH--HHHHHHHhccCCCcEEEEEcCCChHHHHHHHh-cCCcEE------EeCCCChHHHHHHHH
Q 005719 70 FDLVISDVHMPD-MDG--FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGIT-HGACDY------LLKPVRIEELKNIWQ 137 (681)
Q Consensus 70 pDLVLlDV~MPd-mDG--~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~-~GA~DY------LlKPvs~eEL~~i~q 137 (681)
-.|++.|+...+ +.| +++++.+.....+|||+-......+.+.+++. .||+.- -.+-++..+++..++
T Consensus 453 geil~t~id~DGt~~G~d~~l~~~v~~~~~ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~ 530 (538)
T PLN02617 453 GEILLNCIDCDGQGKGFDIELVKLVSDAVTIPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLL 530 (538)
T ss_pred CEEEEeeccccccccCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHH
Confidence 379999998766 456 45788887778999999999999999999997 455553 345567777766554
No 497
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=21.26 E-value=1.3e+02 Score=31.97 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=33.5
Q ss_pred cEEEEEe--CCHHHHHHHHHHHHhCCCeEEEECCHHHHHHH------H---HhcCCCceEEEEeCC
Q 005719 24 MRVLAVD--DDPTCLKVLENFLRACQYEVTVTNQAVTALKM------L---RENRNNFDLVISDVH 78 (681)
Q Consensus 24 mRVLIVD--DD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~------L---~e~~~~pDLVLlDV~ 78 (681)
|||+|+- ..-...+.+.+.+++.||+|..+......+.. + ......+|+||.-.+
T Consensus 1 m~~~i~~~~~s~~s~~~~~~a~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~ 66 (300)
T PRK10446 1 MKIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPRIG 66 (300)
T ss_pred CeEEEEecCCcchhHHHHHHHHHHcCCeEEEEehHHceEecCCCcccEEECCcccCCCCEEEEcCC
Confidence 4566665 55566678888888999999988633221110 0 001125899998655
No 498
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=21.21 E-value=6.6e+02 Score=27.62 Aligned_cols=55 Identities=18% Similarity=0.304 Sum_probs=38.8
Q ss_pred HHHHHhccC--CCcEEEEEcCCChHHHHHHHhcCCcEE------EeC-CCChHHHHHHHHHHHH
Q 005719 87 LLEHVGLEM--DLPVIMLSAYGDTKLVMKGITHGACDY------LLK-PVRIEELKNIWQHVIR 141 (681)
Q Consensus 87 lLe~I~~~~--dlPVImLSa~~d~e~v~kAl~~GA~DY------LlK-Pvs~eEL~~i~q~Vlr 141 (681)
.++.++... ++|||.+..-.+.+.+.+.+..||+.+ +.+ |.-..++.+-+...++
T Consensus 278 ~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~ 341 (344)
T PRK05286 278 VIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLR 341 (344)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 455554443 799999999999999999999999753 444 6555555555555443
No 499
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=21.17 E-value=3.4e+02 Score=31.36 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhcc-CCCcEEEEEcCCChHHHHHHHhcCCcEEE
Q 005719 57 VTALKMLRENRNNFDLVISDVHMPD-MDGFKLLEHVGLE-MDLPVIMLSAYGDTKLVMKGITHGACDYL 123 (681)
Q Consensus 57 ~eALe~L~e~~~~pDLVLlDV~MPd-mDG~elLe~I~~~-~dlPVImLSa~~d~e~v~kAl~~GA~DYL 123 (681)
.++.+.+.+. .+|+|++|..-.. ..-++.++.|+.. +++|||+ ..-...+.+..+++.||+...
T Consensus 230 ~e~a~~L~~a--gvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 230 EERAEALVEA--GVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred HHHHHHHHHh--CCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 3455444433 4899999975333 3346677777654 4788886 666788889999999997764
No 500
>PRK10481 hypothetical protein; Provisional
Probab=21.04 E-value=5.3e+02 Score=27.07 Aligned_cols=79 Identities=13% Similarity=0.092 Sum_probs=42.5
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC------CHHHHHHHHHhc-CCCceEEEEeCCCCCCCHHHHHHHHh
Q 005719 20 FPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTN------QAVTALKMLREN-RNNFDLVISDVHMPDMDGFKLLEHVG 92 (681)
Q Consensus 20 fP~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as------~a~eALe~L~e~-~~~pDLVLlDV~MPdmDG~elLe~I~ 92 (681)
+..+-||-||--.+.......+.+...|+++..+. ......+..++- ....|+|++|.. ++.. +..+.+.
T Consensus 126 l~~g~riGVitP~~~qi~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~--G~~~-~~~~~le 202 (224)
T PRK10481 126 IVGGHQVGVIVPVEEQLAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCL--GYHQ-RHRDLLQ 202 (224)
T ss_pred hcCCCeEEEEEeCHHHHHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCC--CcCH-HHHHHHH
Confidence 33455777776666665555555545588766433 122222222211 235788888763 2222 4445555
Q ss_pred ccCCCcEEE
Q 005719 93 LEMDLPVIM 101 (681)
Q Consensus 93 ~~~dlPVIm 101 (681)
...++|||.
T Consensus 203 ~~lg~PVI~ 211 (224)
T PRK10481 203 KALDVPVLL 211 (224)
T ss_pred HHHCcCEEc
Confidence 566778774
Done!