Query 005719
Match_columns 681
No_of_seqs 357 out of 2022
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 05:31:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 99.9 1.4E-28 4.8E-33 202.1 7.2 64 208-271 1-64 (64)
2 3to5_A CHEY homolog; alpha(5)b 99.9 1.7E-23 5.9E-28 195.3 16.2 120 21-142 10-133 (134)
3 3f6p_A Transcriptional regulat 99.8 6.2E-20 2.1E-24 162.5 16.7 118 23-142 2-119 (120)
4 3gl9_A Response regulator; bet 99.8 8.8E-20 3E-24 162.3 17.1 116 24-141 3-121 (122)
5 3t6k_A Response regulator rece 99.8 2.3E-19 8E-24 162.4 17.8 120 23-144 4-126 (136)
6 2lpm_A Two-component response 99.8 6.8E-22 2.3E-26 182.4 -0.3 114 22-141 7-121 (123)
7 2r25_B Osmosensing histidine p 99.8 5.6E-19 1.9E-23 159.3 16.8 119 23-141 2-126 (133)
8 3h1g_A Chemotaxis protein CHEY 99.8 7.2E-19 2.5E-23 157.2 16.6 119 23-142 5-127 (129)
9 3m6m_D Sensory/regulatory prot 99.8 9.9E-19 3.4E-23 159.9 16.3 120 21-142 12-136 (143)
10 2pl1_A Transcriptional regulat 99.8 3E-18 1E-22 149.9 18.5 118 24-143 1-119 (121)
11 3gt7_A Sensor protein; structu 99.8 2.5E-18 8.4E-23 158.9 17.8 122 22-145 6-130 (154)
12 1zgz_A Torcad operon transcrip 99.8 4.1E-18 1.4E-22 149.5 18.3 118 24-143 3-120 (122)
13 2a9o_A Response regulator; ess 99.8 3.1E-18 1.1E-22 149.2 16.9 117 24-142 2-118 (120)
14 3crn_A Response regulator rece 99.8 3.6E-18 1.2E-22 153.2 17.6 120 23-144 3-123 (132)
15 3jte_A Response regulator rece 99.8 4.7E-18 1.6E-22 153.5 18.3 123 23-145 3-126 (143)
16 3rqi_A Response regulator prot 99.8 5.7E-19 2E-23 168.7 12.6 120 22-143 6-126 (184)
17 1dbw_A Transcriptional regulat 99.8 5E-18 1.7E-22 150.5 17.4 118 23-142 3-121 (126)
18 3h5i_A Response regulator/sens 99.8 1.5E-18 5.2E-23 157.2 14.1 122 22-144 4-126 (140)
19 1xhf_A DYE resistance, aerobic 99.8 6E-18 2E-22 148.7 17.4 118 24-143 4-121 (123)
20 3hv2_A Response regulator/HD d 99.8 6.8E-18 2.3E-22 155.2 18.3 122 21-144 12-135 (153)
21 1tmy_A CHEY protein, TMY; chem 99.8 4.4E-18 1.5E-22 148.9 16.2 116 23-140 2-119 (120)
22 2qzj_A Two-component response 99.8 4.8E-18 1.6E-22 153.8 16.8 120 23-144 4-123 (136)
23 3eod_A Protein HNR; response r 99.8 3E-18 1E-22 152.4 15.1 120 22-143 6-127 (130)
24 1srr_A SPO0F, sporulation resp 99.8 3.9E-18 1.3E-22 150.4 15.7 116 24-141 4-120 (124)
25 1jbe_A Chemotaxis protein CHEY 99.8 8.2E-18 2.8E-22 148.9 17.8 120 22-143 3-126 (128)
26 3grc_A Sensor protein, kinase; 99.8 3E-18 1E-22 154.3 15.0 122 22-145 5-130 (140)
27 1zh2_A KDP operon transcriptio 99.8 5.2E-18 1.8E-22 148.0 16.0 118 24-143 2-119 (121)
28 3hdv_A Response regulator; PSI 99.8 7.9E-18 2.7E-22 150.8 17.6 122 22-144 6-129 (136)
29 3mm4_A Histidine kinase homolo 99.8 3.5E-18 1.2E-22 167.1 16.6 124 19-144 57-198 (206)
30 3lua_A Response regulator rece 99.8 1.4E-18 4.9E-23 156.7 12.6 122 23-145 4-130 (140)
31 3heb_A Response regulator rece 99.8 9.3E-18 3.2E-22 153.8 18.1 122 22-143 3-136 (152)
32 3f6c_A Positive transcription 99.8 2.4E-18 8.1E-23 153.5 13.4 122 24-147 2-125 (134)
33 1i3c_A Response regulator RCP1 99.8 9.3E-18 3.2E-22 153.9 17.7 121 22-142 7-137 (149)
34 1p6q_A CHEY2; chemotaxis, sign 99.8 3.4E-18 1.2E-22 151.5 14.3 119 22-142 5-127 (129)
35 3hdg_A Uncharacterized protein 99.8 5.2E-18 1.8E-22 152.2 15.5 122 22-145 6-128 (137)
36 3r0j_A Possible two component 99.8 8.4E-18 2.9E-22 168.1 18.6 121 22-144 22-143 (250)
37 3kto_A Response regulator rece 99.8 2E-18 7E-23 155.6 12.6 121 23-145 6-129 (136)
38 3kht_A Response regulator; PSI 99.8 8.8E-18 3E-22 152.3 16.6 121 22-144 4-130 (144)
39 1k68_A Phytochrome response re 99.8 1.2E-17 4E-22 148.7 17.1 122 23-144 2-133 (140)
40 1mb3_A Cell division response 99.8 5.7E-18 1.9E-22 148.7 14.7 117 24-142 2-121 (124)
41 3i42_A Response regulator rece 99.8 3.4E-18 1.2E-22 151.4 13.2 118 23-143 3-123 (127)
42 3ilh_A Two component response 99.8 1E-17 3.6E-22 150.8 16.5 122 22-143 8-140 (146)
43 3cnb_A DNA-binding response re 99.8 2E-17 6.7E-22 148.5 17.9 121 22-144 7-132 (143)
44 3b2n_A Uncharacterized protein 99.8 1E-17 3.5E-22 150.4 16.1 119 24-144 4-125 (133)
45 3hzh_A Chemotaxis response reg 99.8 6E-18 2.1E-22 156.7 15.0 120 22-141 35-156 (157)
46 4e7p_A Response regulator; DNA 99.8 9.4E-18 3.2E-22 153.7 16.0 124 20-145 17-143 (150)
47 1dz3_A Stage 0 sporulation pro 99.8 8.7E-18 3E-22 149.7 15.3 119 23-143 2-124 (130)
48 1mvo_A PHOP response regulator 99.8 1.4E-17 4.7E-22 148.9 16.4 119 23-143 3-122 (136)
49 3nhm_A Response regulator; pro 99.8 1.1E-17 3.8E-22 149.0 15.7 120 22-145 3-125 (133)
50 3n0r_A Response regulator; sig 99.8 1.4E-18 4.9E-23 180.1 11.3 118 23-144 160-279 (286)
51 1a04_A Nitrate/nitrite respons 99.8 6.5E-17 2.2E-21 157.0 22.3 121 22-144 4-127 (215)
52 2zay_A Response regulator rece 99.8 1E-17 3.4E-22 152.1 15.5 121 22-144 7-130 (147)
53 3cg0_A Response regulator rece 99.8 1.9E-17 6.4E-22 148.4 17.0 123 22-146 8-132 (140)
54 1k66_A Phytochrome response re 99.8 2.1E-17 7.2E-22 148.9 17.0 122 22-143 5-139 (149)
55 3cfy_A Putative LUXO repressor 99.8 1.3E-17 4.5E-22 151.0 15.7 118 24-143 5-123 (137)
56 1s8n_A Putative antiterminator 99.8 1.3E-17 4.6E-22 161.0 16.5 122 20-143 10-132 (205)
57 4dad_A Putative pilus assembly 99.8 4.9E-18 1.7E-22 154.3 12.3 124 20-143 17-142 (146)
58 2jba_A Phosphate regulon trans 99.7 3.6E-18 1.2E-22 150.6 10.9 118 24-143 3-123 (127)
59 3luf_A Two-component system re 99.7 1.8E-17 6.2E-22 168.4 17.4 122 22-144 123-247 (259)
60 3eul_A Possible nitrate/nitrit 99.7 2.8E-17 9.7E-22 150.5 16.9 127 18-146 10-139 (152)
61 3lte_A Response regulator; str 99.7 3.3E-17 1.1E-21 145.7 16.7 120 22-144 5-127 (132)
62 3cg4_A Response regulator rece 99.7 1.1E-17 3.7E-22 150.7 13.5 122 22-145 6-130 (142)
63 3q9s_A DNA-binding response re 99.7 1.1E-17 3.8E-22 168.4 15.0 119 23-143 37-155 (249)
64 3c3m_A Response regulator rece 99.7 2.8E-17 9.7E-22 148.5 15.9 118 24-143 4-124 (138)
65 3snk_A Response regulator CHEY 99.7 1.5E-18 5.2E-23 156.0 7.3 119 22-142 13-133 (135)
66 3n53_A Response regulator rece 99.7 9.1E-18 3.1E-22 151.4 12.4 120 23-145 3-125 (140)
67 3kcn_A Adenylate cyclase homol 99.7 4.7E-17 1.6E-21 149.2 16.9 122 22-145 3-126 (151)
68 2ayx_A Sensor kinase protein R 99.7 2.3E-17 7.9E-22 166.8 15.8 120 22-143 128-248 (254)
69 2qr3_A Two-component system re 99.7 4.5E-17 1.5E-21 146.0 15.9 120 23-144 3-128 (140)
70 1dcf_A ETR1 protein; beta-alph 99.7 2.8E-17 9.4E-22 147.6 14.5 119 22-143 6-130 (136)
71 1kgs_A DRRD, DNA binding respo 99.7 3.9E-17 1.3E-21 159.0 16.8 198 23-269 2-205 (225)
72 2rjn_A Response regulator rece 99.7 7.7E-17 2.6E-21 147.9 17.3 121 22-144 6-128 (154)
73 2qxy_A Response regulator; reg 99.7 3.5E-17 1.2E-21 147.7 14.6 120 22-144 3-123 (142)
74 3a10_A Response regulator; pho 99.7 4.2E-17 1.4E-21 141.9 14.4 113 24-140 2-115 (116)
75 1yio_A Response regulatory pro 99.7 2.7E-17 9.1E-22 158.6 14.0 119 23-143 4-123 (208)
76 3dzd_A Transcriptional regulat 99.7 2.1E-17 7.3E-22 177.4 14.4 118 24-143 1-119 (368)
77 1qkk_A DCTD, C4-dicarboxylate 99.7 7.1E-17 2.4E-21 148.3 15.6 121 22-144 2-123 (155)
78 3cz5_A Two-component response 99.7 7.5E-17 2.6E-21 147.9 15.3 124 23-148 5-131 (153)
79 2qvg_A Two component response 99.7 1.2E-16 4.1E-21 144.0 16.3 119 23-141 7-134 (143)
80 2gkg_A Response regulator homo 99.7 7.2E-17 2.5E-21 141.3 14.4 116 24-142 6-125 (127)
81 3cu5_A Two component transcrip 99.7 4.8E-17 1.7E-21 148.0 12.5 118 24-143 3-124 (141)
82 1ys7_A Transcriptional regulat 99.7 8.3E-17 2.9E-21 157.5 14.8 120 23-144 7-127 (233)
83 2jk1_A HUPR, hydrogenase trans 99.7 2.5E-16 8.7E-21 142.1 16.6 117 24-143 2-120 (139)
84 3eq2_A Probable two-component 99.7 5.3E-17 1.8E-21 173.5 13.6 118 23-142 5-124 (394)
85 2oqr_A Sensory transduction pr 99.7 8.9E-17 3E-21 157.3 13.8 118 24-143 5-122 (230)
86 3klo_A Transcriptional regulat 99.7 5.7E-17 1.9E-21 159.3 12.4 193 22-268 6-203 (225)
87 2gwr_A DNA-binding response re 99.7 9.3E-17 3.2E-21 159.1 13.6 117 24-142 6-122 (238)
88 1ny5_A Transcriptional regulat 99.7 1.9E-16 6.4E-21 171.0 17.0 118 24-143 1-119 (387)
89 1w25_A Stalked-cell differenti 99.7 2.5E-16 8.5E-21 170.9 17.2 118 24-143 2-122 (459)
90 2pln_A HP1043, response regula 99.7 4.5E-16 1.5E-20 139.8 15.9 118 20-143 15-134 (137)
91 2rdm_A Response regulator rece 99.7 6.2E-16 2.1E-20 137.1 16.4 120 22-144 4-125 (132)
92 2j48_A Two-component sensor ki 99.7 1.5E-16 5.1E-21 136.7 12.0 113 23-140 1-116 (119)
93 2qsj_A DNA-binding response re 99.7 1.5E-16 5.1E-21 145.7 12.8 123 23-146 3-128 (154)
94 3c97_A Signal transduction his 99.7 1.4E-16 4.8E-21 143.9 12.3 118 23-145 10-133 (140)
95 2qv0_A Protein MRKE; structura 99.7 6.1E-16 2.1E-20 139.6 16.5 119 22-144 8-129 (143)
96 3kyj_B CHEY6 protein, putative 99.7 1.2E-16 4E-21 145.3 11.1 117 19-136 9-129 (145)
97 3eqz_A Response regulator; str 99.7 7.7E-17 2.6E-21 143.2 9.5 118 23-143 3-126 (135)
98 3t8y_A CHEB, chemotaxis respon 99.7 7.4E-16 2.5E-20 144.2 15.0 117 23-141 25-154 (164)
99 1p2f_A Response regulator; DRR 99.7 5.9E-16 2E-20 150.8 14.0 191 24-269 3-197 (220)
100 1qo0_D AMIR; binding protein, 99.7 2.8E-16 9.6E-21 150.7 10.5 115 22-143 11-126 (196)
101 2b4a_A BH3024; flavodoxin-like 99.6 3.8E-16 1.3E-20 140.5 10.2 119 18-142 10-131 (138)
102 3bre_A Probable two-component 99.6 6.6E-16 2.3E-20 161.5 13.5 116 24-141 19-138 (358)
103 3c3w_A Two component transcrip 99.6 1.6E-16 5.6E-21 156.6 8.4 121 24-146 2-125 (225)
104 2hqr_A Putative transcriptiona 99.6 1.6E-15 5.5E-20 148.0 13.3 113 24-142 1-115 (223)
105 3sy8_A ROCR; TIM barrel phosph 99.6 1.2E-15 4.1E-20 164.3 12.5 121 23-144 3-130 (400)
106 1dc7_A NTRC, nitrogen regulati 99.6 2.4E-17 8.2E-22 144.1 -1.0 119 23-143 3-122 (124)
107 1a2o_A CHEB methylesterase; ba 99.6 2.8E-14 9.4E-19 152.4 15.4 117 23-141 3-132 (349)
108 3luf_A Two-component system re 99.5 1.7E-14 5.8E-19 146.5 9.3 103 24-130 5-108 (259)
109 2vyc_A Biodegradative arginine 99.5 3.4E-14 1.2E-18 165.8 9.8 119 24-143 1-134 (755)
110 1w25_A Stalked-cell differenti 98.8 5.1E-08 1.8E-12 105.6 17.7 117 23-143 152-271 (459)
111 3cwo_X Beta/alpha-barrel prote 98.8 4.6E-09 1.6E-13 102.2 6.2 92 48-141 6-100 (237)
112 2ayx_A Sensor kinase protein R 97.1 0.001 3.6E-08 66.6 8.0 97 20-140 8-104 (254)
113 3n75_A LDC, lysine decarboxyla 96.4 0.0055 1.9E-07 71.4 8.2 103 36-142 19-123 (715)
114 3q7r_A Transcriptional regulat 96.3 0.0082 2.8E-07 53.6 7.2 101 25-142 14-118 (121)
115 3cwo_X Beta/alpha-barrel prote 94.9 0.16 5.6E-06 48.6 10.9 81 55-136 131-220 (237)
116 2yxb_A Coenzyme B12-dependent 93.9 1.2 4E-05 42.2 14.4 118 23-143 18-146 (161)
117 1ccw_A Protein (glutamate muta 89.4 12 0.00042 34.0 15.3 112 25-138 5-132 (137)
118 2hzd_A Transcriptional enhance 89.3 0.51 1.7E-05 40.5 5.3 58 211-269 3-77 (82)
119 3q58_A N-acetylmannosamine-6-p 88.5 2.2 7.4E-05 42.7 10.3 99 23-125 101-210 (229)
120 1wv2_A Thiazole moeity, thiazo 87.7 2.8 9.6E-05 43.2 10.5 98 39-140 127-236 (265)
121 2yum_A ZZZ3 protein, zinc fing 86.4 1.1 3.8E-05 37.0 5.6 54 213-268 7-63 (75)
122 3igs_A N-acetylmannosamine-6-p 82.9 6 0.00021 39.5 10.3 99 23-125 101-210 (232)
123 2i2x_B MTAC, methyltransferase 82.7 12 0.00043 37.6 12.6 111 22-140 122-242 (258)
124 2cu7_A KIAA1915 protein; nucle 82.2 3.1 0.00011 34.1 6.5 52 211-267 6-57 (72)
125 2yus_A SWI/SNF-related matrix- 81.6 3.2 0.00011 35.1 6.4 46 213-263 17-62 (79)
126 3fkq_A NTRC-like two-domain pr 81.3 14 0.00049 38.8 13.0 103 23-140 21-126 (373)
127 2cqr_A RSGI RUH-043, DNAJ homo 80.2 6 0.00021 33.0 7.6 48 214-263 18-66 (73)
128 1y80_A Predicted cobalamin bin 79.4 8 0.00027 37.5 9.5 99 23-126 88-198 (210)
129 1r8j_A KAIA; circadian clock p 78.3 21 0.00072 36.9 12.3 121 20-143 6-130 (289)
130 4fo4_A Inosine 5'-monophosphat 77.8 17 0.00057 39.0 12.2 99 23-125 120-240 (366)
131 1x41_A Transcriptional adaptor 77.1 4.1 0.00014 32.2 5.4 48 212-263 6-53 (60)
132 2xij_A Methylmalonyl-COA mutas 75.8 36 0.0012 40.0 15.0 117 24-143 605-732 (762)
133 1geq_A Tryptophan synthase alp 75.1 7.4 0.00025 38.3 8.0 54 85-138 69-128 (248)
134 1req_A Methylmalonyl-COA mutas 74.4 32 0.0011 40.2 14.0 115 24-141 597-722 (727)
135 3sjm_A Telomeric repeat-bindin 74.3 5.1 0.00017 32.4 5.4 53 211-268 8-60 (64)
136 3ffs_A Inosine-5-monophosphate 74.2 17 0.00057 39.5 11.1 100 23-125 156-275 (400)
137 3ezx_A MMCP 1, monomethylamine 73.4 9.1 0.00031 37.7 8.1 99 22-125 91-203 (215)
138 2htm_A Thiazole biosynthesis p 73.2 6.3 0.00021 40.7 7.0 94 43-140 120-227 (268)
139 2bfw_A GLGA glycogen synthase; 72.1 26 0.00091 32.0 10.7 106 23-141 70-179 (200)
140 3qja_A IGPS, indole-3-glycerol 71.4 42 0.0014 34.3 12.8 98 25-125 138-242 (272)
141 1xrs_B D-lysine 5,6-aminomutas 70.9 27 0.00094 35.7 11.2 114 23-141 120-257 (262)
142 1xi3_A Thiamine phosphate pyro 67.4 35 0.0012 32.3 10.7 69 52-124 114-189 (215)
143 3khj_A Inosine-5-monophosphate 67.3 25 0.00087 37.4 10.5 100 23-125 117-236 (361)
144 1ity_A TRF1; helix-turn-helix, 66.5 13 0.00044 30.1 6.2 56 209-269 5-60 (69)
145 1qop_A Tryptophan synthase alp 66.3 14 0.00047 37.4 7.9 71 69-139 44-143 (268)
146 3kp1_A D-ornithine aminomutase 65.5 30 0.001 40.0 10.9 115 23-142 602-735 (763)
147 2ekc_A AQ_1548, tryptophan syn 65.2 17 0.0006 36.6 8.4 55 85-139 82-143 (262)
148 2gek_A Phosphatidylinositol ma 65.0 21 0.00072 36.3 9.1 107 23-141 240-348 (406)
149 2gjl_A Hypothetical protein PA 64.6 76 0.0026 32.7 13.3 82 41-125 112-201 (328)
150 2iw5_B Protein corest, REST co 64.4 8.6 0.00029 38.9 5.7 50 212-266 131-180 (235)
151 3r2g_A Inosine 5'-monophosphat 63.9 90 0.0031 33.3 13.9 98 23-125 112-228 (361)
152 2l2q_A PTS system, cellobiose- 63.5 6.8 0.00023 34.4 4.3 77 21-104 2-84 (109)
153 3f4w_A Putative hexulose 6 pho 63.2 61 0.0021 30.8 11.5 100 23-125 77-187 (211)
154 2l69_A Rossmann 2X3 fold prote 62.8 54 0.0019 28.8 9.7 42 24-65 3-44 (134)
155 1yad_A Regulatory protein TENI 62.6 28 0.00095 33.6 9.0 69 52-124 116-191 (221)
156 3fwz_A Inner membrane protein 62.5 31 0.001 30.7 8.7 93 23-124 30-124 (140)
157 2q5c_A NTRC family transcripti 62.1 97 0.0033 29.8 12.7 119 21-141 2-140 (196)
158 4dzz_A Plasmid partitioning pr 62.1 11 0.00039 35.0 5.9 53 22-77 29-83 (206)
159 2c6q_A GMP reductase 2; TIM ba 61.7 55 0.0019 34.6 11.8 101 23-127 132-255 (351)
160 3duw_A OMT, O-methyltransferas 60.8 94 0.0032 29.1 12.3 72 18-91 78-153 (223)
161 3usb_A Inosine-5'-monophosphat 60.4 60 0.002 36.1 12.3 100 23-125 268-388 (511)
162 1xm3_A Thiazole biosynthesis p 60.1 15 0.00052 37.1 6.8 76 47-125 126-207 (264)
163 1rzu_A Glycogen synthase 1; gl 60.0 48 0.0016 35.0 11.1 107 23-140 320-438 (485)
164 4avf_A Inosine-5'-monophosphat 59.2 57 0.002 36.0 11.8 100 23-126 241-362 (490)
165 1jcn_A Inosine monophosphate d 58.9 62 0.0021 35.6 12.1 86 36-124 284-386 (514)
166 2aje_A Telomere repeat-binding 58.6 19 0.00065 32.1 6.3 60 208-272 7-68 (105)
167 2qzs_A Glycogen synthase; glyc 57.8 52 0.0018 34.7 10.8 107 23-140 321-439 (485)
168 1sui_A Caffeoyl-COA O-methyltr 57.6 98 0.0033 30.3 12.2 70 20-91 101-176 (247)
169 3c48_A Predicted glycosyltrans 57.4 64 0.0022 33.3 11.3 108 23-141 276-390 (438)
170 1geq_A Tryptophan synthase alp 56.4 17 0.00057 35.8 6.3 84 38-125 124-220 (248)
171 3o63_A Probable thiamine-phosp 56.2 59 0.002 32.6 10.3 69 52-124 141-218 (243)
172 3rht_A (gatase1)-like protein; 55.4 4.9 0.00017 41.1 2.2 49 24-76 5-57 (259)
173 2lci_A Protein OR36; structura 55.0 29 0.001 30.5 6.7 27 25-51 53-79 (134)
174 3fro_A GLGA glycogen synthase; 55.0 97 0.0033 31.5 12.1 106 23-141 285-394 (439)
175 3c3y_A Pfomt, O-methyltransfer 54.9 48 0.0016 32.2 9.3 70 20-91 92-167 (237)
176 1x58_A Hypothetical protein 49 53.2 43 0.0015 27.2 6.9 56 211-272 5-61 (62)
177 2cqq_A RSGI RUH-037, DNAJ homo 53.1 19 0.00065 29.8 5.1 46 214-264 8-56 (72)
178 2f9f_A First mannosyl transfer 52.6 97 0.0033 28.0 10.5 108 23-143 50-163 (177)
179 3vnd_A TSA, tryptophan synthas 52.6 13 0.00044 38.1 4.8 55 85-139 83-144 (267)
180 3okp_A GDP-mannose-dependent a 51.9 47 0.0016 33.4 9.0 74 57-141 264-343 (394)
181 4fxs_A Inosine-5'-monophosphat 51.3 97 0.0033 34.2 12.0 99 23-125 243-363 (496)
182 3tfw_A Putative O-methyltransf 51.1 87 0.003 30.5 10.5 71 18-91 83-156 (248)
183 1eep_A Inosine 5'-monophosphat 50.9 66 0.0023 34.3 10.3 87 35-124 181-284 (404)
184 1w0t_A Telomeric repeat bindin 50.6 31 0.001 26.3 5.6 50 214-268 2-51 (53)
185 1ujp_A Tryptophan synthase alp 50.4 23 0.00078 36.2 6.3 55 85-139 80-140 (271)
186 2iw1_A Lipopolysaccharide core 49.9 59 0.002 32.5 9.3 106 23-141 228-336 (374)
187 1ypf_A GMP reductase; GUAC, pu 49.5 2.3E+02 0.0079 29.3 14.0 91 31-125 132-239 (336)
188 3tr6_A O-methyltransferase; ce 49.5 70 0.0024 30.0 9.3 72 18-91 84-160 (225)
189 2elk_A SPCC24B10.08C protein; 49.4 33 0.0011 26.8 5.7 48 214-264 9-56 (58)
190 3bul_A Methionine synthase; tr 49.3 66 0.0023 36.5 10.3 102 23-126 98-212 (579)
191 2avd_A Catechol-O-methyltransf 48.9 67 0.0023 30.3 9.1 71 19-91 90-165 (229)
192 2oo3_A Protein involved in cat 48.9 25 0.00086 36.4 6.3 69 23-91 113-182 (283)
193 3cbg_A O-methyltransferase; cy 48.9 63 0.0022 31.1 9.0 71 19-91 93-168 (232)
194 3qhp_A Type 1 capsular polysac 48.5 85 0.0029 27.6 9.2 106 22-141 31-139 (166)
195 3nav_A Tryptophan synthase alp 48.4 19 0.00065 36.9 5.3 56 84-139 84-146 (271)
196 3bw2_A 2-nitropropane dioxygen 48.3 1.3E+02 0.0043 31.6 11.8 77 45-124 143-236 (369)
197 3l4e_A Uncharacterized peptida 47.8 74 0.0025 31.0 9.3 62 23-92 27-98 (206)
198 2r60_A Glycosyl transferase, g 47.4 82 0.0028 33.4 10.4 107 24-141 295-423 (499)
199 3l9w_A Glutathione-regulated p 47.1 55 0.0019 35.2 9.0 92 23-124 27-121 (413)
200 3llv_A Exopolyphosphatase-rela 47.0 1.4E+02 0.0048 25.9 10.3 26 96-123 96-121 (141)
201 2d00_A V-type ATP synthase sub 46.6 1.3E+02 0.0045 26.5 9.8 76 23-104 3-80 (109)
202 3ic5_A Putative saccharopine d 46.2 67 0.0023 26.6 7.7 91 22-122 4-97 (118)
203 3s83_A Ggdef family protein; s 46.0 51 0.0018 32.3 7.9 97 38-137 143-253 (259)
204 3bo9_A Putative nitroalkan dio 45.7 91 0.0031 32.3 10.1 82 41-125 118-205 (326)
205 2tps_A Protein (thiamin phosph 45.6 61 0.0021 31.0 8.3 68 53-124 123-199 (227)
206 3dr5_A Putative O-methyltransf 45.5 29 0.001 33.6 5.9 68 20-91 78-149 (221)
207 2d9a_A B-MYB, MYB-related prot 44.9 39 0.0013 26.3 5.5 51 211-268 5-55 (60)
208 2z6i_A Trans-2-enoyl-ACP reduc 44.5 90 0.0031 32.3 9.9 79 43-124 106-190 (332)
209 1v4v_A UDP-N-acetylglucosamine 44.3 1.7E+02 0.0057 29.5 11.7 100 24-141 231-333 (376)
210 2w6r_A Imidazole glycerol phos 44.3 95 0.0032 30.5 9.6 68 56-125 158-229 (266)
211 1ep3_A Dihydroorotate dehydrog 44.0 1.1E+02 0.0039 30.6 10.4 58 85-142 230-293 (311)
212 1z0s_A Probable inorganic poly 43.8 14 0.00046 38.3 3.4 92 24-141 30-122 (278)
213 2x6q_A Trehalose-synthase TRET 43.0 2.3E+02 0.0077 28.9 12.7 106 23-141 262-378 (416)
214 1rd5_A Tryptophan synthase alp 42.6 34 0.0012 34.1 6.1 55 84-139 82-139 (262)
215 2xag_B REST corepressor 1; ami 42.6 22 0.00075 39.5 4.9 51 212-267 378-428 (482)
216 2v5j_A 2,4-dihydroxyhept-2-ENE 42.4 2.1E+02 0.0071 29.2 12.1 97 39-138 30-132 (287)
217 3qz6_A HPCH/HPAI aldolase; str 42.3 1.5E+02 0.0053 29.7 10.9 99 39-139 6-110 (261)
218 1qdl_B Protein (anthranilate s 42.2 14 0.00049 35.1 3.1 89 24-120 1-97 (195)
219 1y0e_A Putative N-acetylmannos 42.2 93 0.0032 29.7 9.0 86 37-125 108-204 (223)
220 1vrd_A Inosine-5'-monophosphat 41.6 1.7E+02 0.0057 31.9 11.9 87 35-124 265-368 (494)
221 4fyk_A Deoxyribonucleoside 5'- 41.6 94 0.0032 29.2 8.5 111 24-142 3-142 (152)
222 3axs_A Probable N(2),N(2)-dime 41.6 1E+02 0.0035 33.1 10.0 78 24-106 78-160 (392)
223 4e5v_A Putative THUA-like prot 41.4 30 0.001 35.5 5.5 76 23-103 4-93 (281)
224 2vws_A YFAU, 2-keto-3-deoxy su 41.1 2.4E+02 0.0082 28.3 12.2 98 39-139 9-112 (267)
225 1ka9_F Imidazole glycerol phos 41.1 1.7E+02 0.0059 28.3 10.9 77 57-135 155-241 (252)
226 1guu_A C-MYB, MYB proto-oncoge 40.6 54 0.0019 24.6 5.6 45 214-262 3-47 (52)
227 2w6r_A Imidazole glycerol phos 40.2 99 0.0034 30.4 9.0 70 55-126 31-104 (266)
228 3u81_A Catechol O-methyltransf 40.0 64 0.0022 30.6 7.3 62 19-80 79-145 (221)
229 2cjj_A Radialis; plant develop 39.9 30 0.001 30.1 4.4 50 215-268 9-61 (93)
230 2al1_A Enolase 1, 2-phospho-D- 39.3 48 0.0016 36.2 7.0 105 30-137 219-357 (436)
231 1thf_D HISF protein; thermophI 39.2 2.3E+02 0.0077 27.4 11.4 68 56-125 153-224 (253)
232 2xxa_A Signal recognition part 39.2 59 0.002 35.3 7.7 53 23-77 129-191 (433)
233 1lss_A TRK system potassium up 38.3 1.8E+02 0.0063 24.6 10.7 26 98-126 97-122 (140)
234 2hnk_A SAM-dependent O-methylt 37.9 1.3E+02 0.0044 28.8 9.3 70 20-91 82-167 (239)
235 1p0k_A Isopentenyl-diphosphate 37.8 2.6E+02 0.0088 28.9 12.2 87 36-125 167-280 (349)
236 1h5y_A HISF; histidine biosynt 37.8 1.7E+02 0.0059 27.8 10.2 67 56-124 156-226 (253)
237 2jjm_A Glycosyl transferase, g 37.6 73 0.0025 32.4 7.8 65 70-141 285-349 (394)
238 2v82_A 2-dehydro-3-deoxy-6-pho 37.5 65 0.0022 30.7 7.0 92 41-139 95-196 (212)
239 2xci_A KDO-transferase, 3-deox 37.4 66 0.0023 33.4 7.5 110 24-142 226-346 (374)
240 2fhp_A Methylase, putative; al 37.1 1.8E+02 0.0061 26.0 9.6 68 24-91 68-138 (187)
241 2khz_A C-MYC-responsive protei 37.1 1E+02 0.0035 28.8 8.1 112 21-142 9-151 (165)
242 2akz_A Gamma enolase, neural; 36.8 52 0.0018 35.9 6.8 105 30-137 217-354 (439)
243 3beo_A UDP-N-acetylglucosamine 36.6 3E+02 0.01 27.3 12.1 59 70-141 283-341 (375)
244 1vgv_A UDP-N-acetylglucosamine 35.9 1.6E+02 0.0054 29.6 10.0 42 95-141 300-341 (384)
245 2dul_A N(2),N(2)-dimethylguano 35.6 1.1E+02 0.0038 32.4 9.0 76 24-105 72-165 (378)
246 4gud_A Imidazole glycerol phos 35.3 44 0.0015 31.8 5.3 43 25-75 4-46 (211)
247 3tsm_A IGPS, indole-3-glycerol 35.3 2.4E+02 0.0081 28.8 11.1 88 34-125 156-249 (272)
248 1h5y_A HISF; histidine biosynt 35.1 1.6E+02 0.0054 28.1 9.4 70 54-125 33-106 (253)
249 1tqj_A Ribulose-phosphate 3-ep 34.9 61 0.0021 31.9 6.4 81 56-139 19-108 (230)
250 2iuy_A Avigt4, glycosyltransfe 34.4 45 0.0015 33.3 5.4 64 70-140 232-306 (342)
251 2y88_A Phosphoribosyl isomeras 34.3 84 0.0029 30.4 7.3 77 56-134 151-240 (244)
252 3abi_A Putative uncharacterize 34.3 61 0.0021 33.7 6.7 96 22-128 15-110 (365)
253 1ka9_F Imidazole glycerol phos 34.3 1.8E+02 0.0061 28.2 9.7 69 55-125 32-104 (252)
254 1vzw_A Phosphoribosyl isomeras 33.7 1.2E+02 0.0041 29.4 8.3 78 55-134 147-237 (244)
255 2qfm_A Spermine synthase; sper 33.4 1.8E+02 0.0062 31.1 10.1 56 24-79 212-277 (364)
256 2fli_A Ribulose-phosphate 3-ep 33.3 38 0.0013 32.3 4.5 55 69-124 131-197 (220)
257 3l4b_C TRKA K+ channel protien 32.8 1E+02 0.0034 29.3 7.4 91 23-123 23-117 (218)
258 3ajx_A 3-hexulose-6-phosphate 32.6 42 0.0014 31.8 4.7 56 83-138 39-98 (207)
259 3f4w_A Putative hexulose 6 pho 32.4 53 0.0018 31.1 5.4 57 83-139 39-99 (211)
260 2roh_A RTBP1, telomere binding 32.0 63 0.0022 29.4 5.4 57 209-270 26-84 (122)
261 1yxy_A Putative N-acetylmannos 31.7 1.7E+02 0.0058 28.1 9.0 85 36-125 121-215 (234)
262 1gox_A (S)-2-hydroxy-acid oxid 31.6 1.5E+02 0.0051 31.3 9.2 87 36-125 214-309 (370)
263 2dim_A Cell division cycle 5-l 31.3 89 0.003 25.0 5.7 51 211-268 6-56 (70)
264 1gvd_A MYB proto-oncogene prot 31.0 73 0.0025 23.9 4.9 44 214-261 3-46 (52)
265 2fpo_A Methylase YHHF; structu 30.9 1.6E+02 0.0055 27.5 8.5 65 25-92 79-145 (202)
266 1rd5_A Tryptophan synthase alp 30.5 1.7E+02 0.0058 28.9 8.9 42 84-125 189-230 (262)
267 1wl8_A GMP synthase [glutamine 30.2 45 0.0015 31.3 4.4 77 24-104 1-80 (189)
268 2px0_A Flagellar biosynthesis 30.0 1E+02 0.0036 31.4 7.4 59 22-83 133-194 (296)
269 4e38_A Keto-hydroxyglutarate-a 30.0 1.3E+02 0.0043 30.2 7.8 93 39-134 27-121 (232)
270 4adt_A Pyridoxine biosynthetic 29.5 1.3E+02 0.0043 31.2 8.0 41 85-125 196-238 (297)
271 2i7c_A Spermidine synthase; tr 29.5 1.3E+02 0.0043 30.3 7.8 59 20-81 99-163 (283)
272 3tqp_A Enolase; energy metabol 29.5 64 0.0022 35.2 6.0 105 31-136 216-348 (428)
273 2ho3_A Oxidoreductase, GFO/IDH 29.0 4.2E+02 0.014 26.5 11.8 104 24-140 2-110 (325)
274 3c6k_A Spermine synthase; sper 28.9 1.2E+02 0.0041 32.7 7.8 60 20-80 226-295 (381)
275 2juh_A Telomere binding protei 28.8 84 0.0029 28.6 5.7 58 208-270 11-70 (121)
276 1dxe_A 2-dehydro-3-deoxy-galac 28.5 4E+02 0.014 26.4 11.3 98 39-138 10-112 (256)
277 1i1q_B Anthranilate synthase c 28.5 54 0.0019 30.9 4.6 78 24-104 1-84 (192)
278 3l0g_A Nicotinate-nucleotide p 28.3 1.6E+02 0.0055 30.7 8.5 66 51-123 212-277 (300)
279 3dqp_A Oxidoreductase YLBE; al 28.3 1.9E+02 0.0066 26.9 8.5 31 24-54 1-31 (219)
280 1thf_D HISF protein; thermophI 28.3 2.5E+02 0.0085 27.1 9.6 42 85-126 63-104 (253)
281 3lp8_A Phosphoribosylamine-gly 28.2 1E+02 0.0035 33.1 7.3 58 18-77 16-91 (442)
282 2ixa_A Alpha-N-acetylgalactosa 28.1 2E+02 0.0068 30.7 9.6 113 23-141 20-140 (444)
283 3ovp_A Ribulose-phosphate 3-ep 28.0 72 0.0025 31.5 5.6 56 69-125 134-197 (228)
284 2yqk_A Arginine-glutamic acid 27.9 82 0.0028 25.0 4.9 45 210-258 5-49 (63)
285 3ceu_A Thiamine phosphate pyro 27.7 80 0.0027 30.4 5.7 67 52-123 94-170 (210)
286 3c3p_A Methyltransferase; NP_9 27.6 60 0.002 30.4 4.8 67 19-91 77-146 (210)
287 3oy2_A Glycosyltransferase B73 27.4 1.9E+02 0.0064 29.5 8.9 106 24-141 216-354 (413)
288 3iwt_A 178AA long hypothetical 27.2 1.5E+02 0.0051 27.6 7.4 62 18-79 10-91 (178)
289 1f0k_A MURG, UDP-N-acetylgluco 27.2 1.1E+02 0.0037 30.6 6.9 62 70-139 255-322 (364)
290 2ckx_A NGTRF1, telomere bindin 27.1 77 0.0026 26.8 4.8 50 216-270 2-53 (83)
291 3tsa_A SPNG, NDP-rhamnosyltran 27.1 1.1E+02 0.0038 31.1 7.0 71 24-102 2-141 (391)
292 3ajd_A Putative methyltransfer 27.0 2.5E+02 0.0085 27.7 9.5 54 24-77 109-164 (274)
293 3tj4_A Mandelate racemase; eno 27.0 4.9E+02 0.017 27.1 12.2 81 55-137 209-290 (372)
294 1id1_A Putative potassium chan 26.7 2.2E+02 0.0075 25.2 8.2 52 69-123 71-123 (153)
295 1izc_A Macrophomate synthase i 26.6 3.5E+02 0.012 28.4 10.9 83 55-139 51-139 (339)
296 3vk5_A MOEO5; TIM barrel, tran 26.6 96 0.0033 32.2 6.3 57 69-126 199-257 (286)
297 2i2c_A Probable inorganic poly 26.5 1.1E+02 0.0037 30.8 6.7 86 24-142 1-93 (272)
298 3h2s_A Putative NADH-flavin re 26.5 81 0.0028 29.4 5.4 57 24-82 1-57 (224)
299 3ffs_A Inosine-5-monophosphate 26.5 1.4E+02 0.0047 32.3 7.8 65 57-124 146-211 (400)
300 2glx_A 1,5-anhydro-D-fructose 26.3 3.8E+02 0.013 26.8 10.9 104 24-140 1-110 (332)
301 2pyy_A Ionotropic glutamate re 26.3 1.7E+02 0.0057 26.4 7.5 49 22-77 111-159 (228)
302 3ia7_A CALG4; glycosysltransfe 26.2 1.5E+02 0.0052 29.9 7.9 75 22-103 2-131 (402)
303 2nli_A Lactate oxidase; flavoe 26.1 2.1E+02 0.0072 30.2 9.2 88 35-125 217-313 (368)
304 3tdn_A FLR symmetric alpha-bet 25.8 1E+02 0.0036 30.0 6.3 69 55-125 36-108 (247)
305 1gv2_A C-MYB, MYB proto-oncoge 25.8 1.2E+02 0.004 26.0 5.9 48 214-269 56-103 (105)
306 3hm2_A Precorrin-6Y C5,15-meth 25.6 1.9E+02 0.0065 25.6 7.6 63 23-91 49-113 (178)
307 1ws6_A Methyltransferase; stru 25.5 3.3E+02 0.011 23.7 9.2 68 23-91 63-131 (171)
308 3r3h_A O-methyltransferase, SA 25.3 51 0.0018 32.3 3.9 71 19-91 81-156 (242)
309 3kts_A Glycerol uptake operon 25.3 82 0.0028 30.8 5.3 63 57-125 117-179 (192)
310 2b2c_A Spermidine synthase; be 25.1 1.4E+02 0.0049 30.6 7.5 58 20-80 129-192 (314)
311 1qop_A Tryptophan synthase alp 25.1 2.7E+02 0.0091 27.8 9.3 42 85-126 194-235 (268)
312 1rpx_A Protein (ribulose-phosp 25.1 52 0.0018 31.9 3.9 102 22-124 90-206 (230)
313 3ot5_A UDP-N-acetylglucosamine 25.0 4.4E+02 0.015 27.6 11.5 43 94-141 318-360 (403)
314 3paj_A Nicotinate-nucleotide p 25.0 2.8E+02 0.0097 29.1 9.6 92 25-123 204-301 (320)
315 3jy6_A Transcriptional regulat 25.0 2.7E+02 0.0093 26.6 9.1 63 36-105 26-94 (276)
316 2qjg_A Putative aldolase MJ040 24.7 5E+02 0.017 25.4 11.2 53 68-124 178-236 (273)
317 2igt_A SAM dependent methyltra 24.7 1.5E+02 0.0051 30.7 7.6 55 23-77 175-233 (332)
318 1wgx_A KIAA1903 protein; MYB D 24.6 74 0.0025 26.5 4.1 44 216-261 10-54 (73)
319 3iwp_A Copper homeostasis prot 24.6 3.3E+02 0.011 28.2 9.9 89 47-138 39-150 (287)
320 3sr7_A Isopentenyl-diphosphate 24.2 4.8E+02 0.016 27.6 11.5 87 35-125 194-307 (365)
321 1vlj_A NADH-dependent butanol 24.1 1.6E+02 0.0056 31.3 7.9 63 24-91 44-120 (407)
322 3u3x_A Oxidoreductase; structu 24.0 2.5E+02 0.0087 28.9 9.2 106 22-140 25-136 (361)
323 1h1y_A D-ribulose-5-phosphate 24.0 75 0.0026 30.9 4.8 56 69-125 138-201 (228)
324 2iuy_A Avigt4, glycosyltransfe 23.9 1.6E+02 0.0055 29.1 7.4 55 23-79 3-94 (342)
325 3e8x_A Putative NAD-dependent 23.8 92 0.0031 29.5 5.3 56 21-78 19-75 (236)
326 3euw_A MYO-inositol dehydrogen 23.6 4.2E+02 0.014 26.8 10.7 105 23-140 4-113 (344)
327 3qja_A IGPS, indole-3-glycerol 23.5 1.7E+02 0.0057 29.8 7.4 56 85-140 102-159 (272)
328 3lab_A Putative KDPG (2-keto-3 23.5 2.5E+02 0.0085 27.9 8.5 52 82-134 49-100 (217)
329 1qv9_A F420-dependent methylen 23.4 1.8E+02 0.0061 29.8 7.3 58 69-127 64-121 (283)
330 3khj_A Inosine-5-monophosphate 23.4 3.5E+02 0.012 28.5 10.2 65 57-124 107-172 (361)
331 4eef_G F-HB80.4, designed hema 23.1 29 0.00098 29.2 1.3 45 215-261 21-66 (74)
332 3ew7_A LMO0794 protein; Q8Y8U8 23.1 80 0.0027 29.2 4.7 55 24-81 1-55 (221)
333 3tha_A Tryptophan synthase alp 23.0 59 0.002 33.0 3.9 55 85-142 79-139 (252)
334 3lkv_A Uncharacterized conserv 23.0 79 0.0027 31.7 4.9 79 20-101 137-225 (302)
335 1lst_A Lysine, arginine, ornit 22.9 1.8E+02 0.0063 26.6 7.2 53 22-77 110-162 (239)
336 3bfj_A 1,3-propanediol oxidore 22.9 1.5E+02 0.0051 31.2 7.3 63 24-91 34-111 (387)
337 3c0k_A UPF0064 protein YCCW; P 22.9 2.2E+02 0.0074 29.9 8.5 54 24-77 244-301 (396)
338 1iy9_A Spermidine synthase; ro 22.8 1E+02 0.0036 30.8 5.7 58 20-80 96-159 (275)
339 3s28_A Sucrose synthase 1; gly 22.8 4.7E+02 0.016 30.7 12.0 108 24-141 604-729 (816)
340 3pfn_A NAD kinase; structural 22.7 1E+02 0.0036 32.9 5.9 100 25-143 40-165 (365)
341 3cni_A Putative ABC type-2 tra 22.7 1.5E+02 0.0052 26.8 6.4 53 20-75 7-61 (156)
342 2yxd_A Probable cobalt-precorr 22.7 3.9E+02 0.013 23.4 9.8 73 22-102 56-130 (183)
343 3kru_A NADH:flavin oxidoreduct 22.7 3.2E+02 0.011 28.5 9.7 68 56-123 229-304 (343)
344 3ip3_A Oxidoreductase, putativ 22.3 91 0.0031 31.9 5.3 34 108-141 81-116 (337)
345 3p3b_A Mandelate racemase/muco 22.3 1.8E+02 0.006 30.8 7.7 76 55-135 213-294 (392)
346 4fzr_A SSFS6; structural genom 22.1 1.9E+02 0.0065 29.5 7.8 72 24-103 16-151 (398)
347 2nzl_A Hydroxyacid oxidase 1; 22.0 1.8E+02 0.0062 31.1 7.7 87 36-125 241-336 (392)
348 3k9c_A Transcriptional regulat 22.0 2.3E+02 0.008 27.4 8.1 63 36-105 30-97 (289)
349 3rc1_A Sugar 3-ketoreductase; 21.9 5.6E+02 0.019 26.1 11.3 105 23-141 27-138 (350)
350 1cyd_A Carbonyl reductase; sho 21.9 4.3E+02 0.015 24.7 9.8 57 22-78 6-62 (244)
351 2eqr_A N-COR1, N-COR, nuclear 21.9 1.7E+02 0.0059 22.8 5.7 51 211-269 9-59 (61)
352 3fro_A GLGA glycogen synthase; 21.8 2.4E+02 0.0081 28.5 8.3 32 23-54 2-42 (439)
353 3c85_A Putative glutathione-re 21.8 4.5E+02 0.015 23.7 10.0 41 22-63 38-79 (183)
354 1h8a_C AMV V-MYB, MYB transfor 21.7 1.5E+02 0.005 26.4 5.9 48 214-269 79-126 (128)
355 3cea_A MYO-inositol 2-dehydrog 21.7 4.6E+02 0.016 26.3 10.5 105 23-139 8-118 (346)
356 1wxx_A TT1595, hypothetical pr 21.7 2.6E+02 0.0088 29.2 8.8 55 23-77 231-287 (382)
357 4had_A Probable oxidoreductase 21.7 3.3E+02 0.011 27.6 9.4 108 21-141 21-135 (350)
358 1o2d_A Alcohol dehydrogenase, 21.6 1.2E+02 0.0043 31.7 6.3 64 23-91 40-117 (371)
359 2kpo_A Rossmann 2X2 fold prote 21.6 2E+02 0.0069 24.5 6.2 41 24-64 3-43 (110)
360 2ffh_A Protein (FFH); SRP54, s 21.5 1.7E+02 0.0059 31.7 7.5 55 21-77 124-188 (425)
361 1j8m_F SRP54, signal recogniti 21.5 1.1E+02 0.0038 31.2 5.7 54 22-77 125-188 (297)
362 1qo2_A Molecule: N-((5-phospho 21.5 1.9E+02 0.0066 27.9 7.3 67 55-124 145-222 (241)
363 1ujp_A Tryptophan synthase alp 21.4 1.9E+02 0.0064 29.4 7.3 96 26-126 123-230 (271)
364 3r75_A Anthranilate/para-amino 21.4 94 0.0032 35.7 5.6 89 22-120 445-541 (645)
365 4amg_A Snogd; transferase, pol 21.4 1.5E+02 0.005 30.1 6.7 38 18-55 17-58 (400)
366 4hkt_A Inositol 2-dehydrogenas 21.4 4.1E+02 0.014 26.7 10.0 105 23-141 3-112 (331)
367 3gr7_A NADPH dehydrogenase; fl 21.3 4.2E+02 0.014 27.5 10.2 38 85-122 266-303 (340)
368 3mz0_A Inositol 2-dehydrogenas 21.3 3.8E+02 0.013 27.1 9.8 106 24-141 3-115 (344)
369 4fxs_A Inosine-5'-monophosphat 21.3 1.8E+02 0.0061 32.1 7.6 55 69-124 243-299 (496)
370 3tqv_A Nicotinate-nucleotide p 21.2 3.6E+02 0.012 27.9 9.4 91 26-123 172-268 (287)
371 2o07_A Spermidine synthase; st 21.1 1.7E+02 0.0057 29.8 7.0 57 21-80 117-179 (304)
372 2p10_A MLL9387 protein; putati 21.1 3.7E+02 0.013 27.9 9.4 77 45-126 161-260 (286)
373 3kke_A LACI family transcripti 21.1 2.3E+02 0.0079 27.7 7.8 65 35-105 33-103 (303)
374 3st7_A Capsular polysaccharide 21.0 3.3E+02 0.011 27.6 9.2 79 24-105 1-95 (369)
375 2b78_A Hypothetical protein SM 21.0 2E+02 0.0069 30.2 7.7 53 25-77 237-293 (385)
376 3ox4_A Alcohol dehydrogenase 2 20.9 1.1E+02 0.0039 32.3 5.8 63 24-91 32-107 (383)
377 2r6o_A Putative diguanylate cy 20.9 2.3E+02 0.008 28.6 8.0 95 40-137 169-277 (294)
378 3s5p_A Ribose 5-phosphate isom 20.8 5.5E+02 0.019 24.5 11.0 114 18-140 16-145 (166)
379 3ntv_A MW1564 protein; rossman 20.8 1.6E+02 0.0056 28.1 6.5 64 23-91 95-162 (232)
380 3gjy_A Spermidine synthase; AP 20.8 94 0.0032 32.4 5.0 59 20-81 111-171 (317)
381 1qpo_A Quinolinate acid phosph 20.7 2.6E+02 0.0089 28.7 8.3 94 26-124 168-268 (284)
382 1fy2_A Aspartyl dipeptidase; s 20.5 1.3E+02 0.0045 29.5 5.8 62 22-91 30-97 (229)
383 2gl5_A Putative dehydratase pr 20.5 4.8E+02 0.016 27.4 10.6 81 55-137 230-311 (410)
384 3tqv_A Nicotinate-nucleotide p 20.4 1.8E+02 0.0061 30.1 6.9 68 70-139 169-239 (287)
385 3uj2_A Enolase 1; enzyme funct 20.4 1.2E+02 0.0042 33.2 6.0 81 55-136 290-374 (449)
386 3q2i_A Dehydrogenase; rossmann 20.4 6.8E+02 0.023 25.3 11.7 106 23-141 13-124 (354)
387 3p9n_A Possible methyltransfer 20.3 4.1E+02 0.014 24.0 8.9 66 24-91 68-137 (189)
388 1zh8_A Oxidoreductase; TM0312, 20.3 4.3E+02 0.015 26.8 10.0 106 22-140 17-130 (340)
389 2an1_A Putative kinase; struct 20.0 1.6E+02 0.0055 29.5 6.5 97 24-142 6-119 (292)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.95 E-value=1.4e-28 Score=202.12 Aligned_cols=64 Identities=75% Similarity=1.132 Sum_probs=61.6
Q ss_pred ccCCCCccccchhhHHHHHHHHHHhcCCCCChhhHHhhcCCCCCcHHHHHHhhhhhHhhhcccC
Q 005719 208 TTQKKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFRLYLKRLS 271 (681)
Q Consensus 208 s~~kk~r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~v~glt~~~v~ShLqkyr~~l~~~~ 271 (681)
+..+|+|++||+|||++||+||++||.|+|+||+||++|||+|||++||+|||||||++|+|++
T Consensus 1 ~~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~~ 64 (64)
T 1irz_A 1 TAQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKVS 64 (64)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHccC
Confidence 3578999999999999999999999999999999999999999999999999999999999975
No 2
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.90 E-value=1.7e-23 Score=195.34 Aligned_cols=120 Identities=30% Similarity=0.587 Sum_probs=110.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CC
Q 005719 21 PIGMRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE---MD 96 (681)
Q Consensus 21 P~GmRVLIVDDD~~~r~iL~~~Le~~gy~-Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~---~d 96 (681)
-+++|||||||++..|..++.+|+..||+ |.++.++.+|++.++.. .||+||+|+.||+|||++++++|+.. .+
T Consensus 10 ~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~--~~DlillD~~MP~mdG~el~~~ir~~~~~~~ 87 (134)
T 3to5_A 10 NKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKG--DFDFVVTDWNMPGMQGIDLLKNIRADEELKH 87 (134)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTT
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHhCCCCCC
Confidence 36789999999999999999999999996 66899999999999875 49999999999999999999999643 57
Q ss_pred CcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 97 LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 97 lPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
+|||++|+..+.+.+.++++.||++||.|||+.++|..+++++++|
T Consensus 88 ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 88 LPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp CCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred CeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999988754
No 3
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.84 E-value=6.2e-20 Score=162.49 Aligned_cols=118 Identities=32% Similarity=0.488 Sum_probs=110.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIML 102 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImL 102 (681)
+.|||||||++..+..++.+|+..||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.++....+|||++
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~ 79 (120)
T 3f6p_A 2 DKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEEL--QPDLILLDIMLPNKDGVEVCREVRKKYDMPIIML 79 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT--CCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEE
Confidence 35899999999999999999999999999999999999999754 5999999999999999999999987778999999
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 103 SAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
|+..+.....++++.||++||.||++.++|..+++.++++
T Consensus 80 t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 80 TAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp EESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred ECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999988764
No 4
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.83 E-value=8.8e-20 Score=162.27 Aligned_cols=116 Identities=29% Similarity=0.418 Sum_probs=108.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE---MDLPVI 100 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~---~dlPVI 100 (681)
.|||||||++..+..++.+|+..||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~--~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii 80 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEF--TPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVI 80 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTB--CCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc--CCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEE
Confidence 5899999999999999999999999999999999999999754 59999999999999999999999643 579999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
++|+..+.....++++.||++||.||++.++|...++++++
T Consensus 81 ~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 81 VLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998764
No 5
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.82 E-value=2.3e-19 Score=162.43 Aligned_cols=120 Identities=36% Similarity=0.536 Sum_probs=110.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCcE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL---EMDLPV 99 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~---~~dlPV 99 (681)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+. .+.+||
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pi 81 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKN--LPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPI 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccE
Confidence 46899999999999999999999999999999999999999865 4999999999999999999999964 357999
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
|++|+..+.....++++.||++||.||++.++|..++++++++..
T Consensus 82 i~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~ 126 (136)
T 3t6k_A 82 LMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTT 126 (136)
T ss_dssp EEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC--
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999987653
No 6
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.82 E-value=6.8e-22 Score=182.36 Aligned_cols=114 Identities=24% Similarity=0.391 Sum_probs=101.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVI 100 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVI 100 (681)
..+|||||||++..+..++.+|+..||+|+ ++.++.+|++.++.. .||+||+|++||+|||+++++.|+. .++|||
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~--~~DlvllDi~mP~~~G~el~~~lr~-~~ipvI 83 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKG--QFDIAIIDVNLDGEPSYPVADILAE-RNVPFI 83 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHC--CSSEEEECSSSSSCCSHHHHHHHHH-TCCSSC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC--CCCEEEEecCCCCCCHHHHHHHHHc-CCCCEE
Confidence 458999999999999999999999999986 789999999999865 4999999999999999999999975 579999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
++|++.+... +.+.|+++||.|||+.++|..+++++++
T Consensus 84 ~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 84 FATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQISK 121 (123)
T ss_dssp CBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTCS
T ss_pred EEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHHh
Confidence 9999877654 3467999999999999999998877643
No 7
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.81 E-value=5.6e-19 Score=159.33 Aligned_cols=119 Identities=21% Similarity=0.433 Sum_probs=107.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHhc---CCCceEEEEeCCCCCCCHHHHHHHHhc--cCC
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQY-EVTVTNQAVTALKMLREN---RNNFDLVISDVHMPDMDGFKLLEHVGL--EMD 96 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy-~Vt~as~a~eALe~L~e~---~~~pDLVLlDV~MPdmDG~elLe~I~~--~~d 96 (681)
.+|||||||++..+..++.+|+..|| .|..+.++.+|++.+... ...||+||+|+.||+++|+++++.|+. .+.
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~ 81 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYT 81 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCC
Confidence 47899999999999999999998887 488899999999988751 135999999999999999999999964 357
Q ss_pred CcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 97 LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 97 lPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
+|||++|+..+...+.++++.||++||.||++.++|..+++.++.
T Consensus 82 ~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 82 SPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp SCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999988764
No 8
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.80 E-value=7.2e-19 Score=157.18 Aligned_cols=119 Identities=30% Similarity=0.549 Sum_probs=108.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE---MDLP 98 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~-Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~---~dlP 98 (681)
.+|||||||++..+..++.+|++.||. |..+.++.+|++.+... ..||+||+|+.||+++|+++++.++.. +.+|
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~p 83 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDAN-ADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIP 83 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHC-TTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCe
Confidence 579999999999999999999999995 88999999999988754 358999999999999999999999643 5789
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
||++|+..+...+.++++.||++||.||++.++|..+++.++++
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 84 IIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp EEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred EEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999988753
No 9
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.80 E-value=9.9e-19 Score=159.91 Aligned_cols=120 Identities=29% Similarity=0.416 Sum_probs=105.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-----cC
Q 005719 21 PIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-----EM 95 (681)
Q Consensus 21 P~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-----~~ 95 (681)
..++|||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+. .+
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~ 89 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEE--DYDAVIVDLHMPGMNGLDMLKQLRVMQASGMR 89 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHHHHTTCC
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhchhccCC
Confidence 4568999999999999999999999999999999999999999764 4999999999999999999999852 24
Q ss_pred CCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 96 DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 96 dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
.+|||++|+..+.+.+.++++.||++||.||++.++|...+..+...
T Consensus 90 ~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 90 YTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999887543
No 10
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.80 E-value=3e-18 Score=149.86 Aligned_cols=118 Identities=31% Similarity=0.433 Sum_probs=109.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVIML 102 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVImL 102 (681)
+|||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~--~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 78 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEH--IPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 5899999999999999999999999999999999999999764 4999999999999999999999964 467999999
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 103 SAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
|+..+.....++++.||++|+.||++.++|..++++++++.
T Consensus 79 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999988653
No 11
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.79 E-value=2.5e-18 Score=158.87 Aligned_cols=122 Identities=29% Similarity=0.454 Sum_probs=112.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE---MDLP 98 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~---~dlP 98 (681)
..+|||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+.. +.+|
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLT--RPDLIISDVLMPEMDGYALCRWLKGQPDLRTIP 83 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTC--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCC
Confidence 357999999999999999999999999999999999999999754 59999999999999999999999654 6799
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhhc
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKV 145 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk~ 145 (681)
||++|+..+.+...++++.||++||.||++.++|..++++++++.+.
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 130 (154)
T 3gt7_A 84 VILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKR 130 (154)
T ss_dssp EEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCC
T ss_pred EEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999876543
No 12
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.79 E-value=4.1e-18 Score=149.54 Aligned_cols=118 Identities=23% Similarity=0.446 Sum_probs=110.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLS 103 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLS 103 (681)
.+||||||++..+..++.+|+..||.|..+.++.++++.+... .||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s 80 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQ--SVDLILLDINLPDENGLMLTRALRERSTVGIILVT 80 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEE
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcC--CCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEE
Confidence 5899999999999999999999999999999999999998764 49999999999999999999999777789999999
Q ss_pred cCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 104 AYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 104 a~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
+..+.....++++.||++||.||++.++|...+++++++.
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 120 (122)
T 1zgz_A 81 GRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 (122)
T ss_dssp SSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988653
No 13
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.79 E-value=3.1e-18 Score=149.22 Aligned_cols=117 Identities=26% Similarity=0.444 Sum_probs=109.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLS 103 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLS 103 (681)
.|||||||++..+..++..|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE--QPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLS 79 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhC--CCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEe
Confidence 4899999999999999999999999999999999999998765 49999999999999999999999766789999999
Q ss_pred cCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 104 AYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 104 a~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
+..+.....++++.||++||.||++.++|...+++++++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 80 AKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999988764
No 14
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.79 E-value=3.6e-18 Score=153.22 Aligned_cols=120 Identities=27% Similarity=0.435 Sum_probs=110.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVIM 101 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVIm 101 (681)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENE--FFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIM 80 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEE
Confidence 36899999999999999999999999999999999999999764 4999999999999999999999953 56899999
Q ss_pred EEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 102 LSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
+|+..+.....++++.||++||.||++.++|..++++++++..
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 123 (132)
T 3crn_A 81 VTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQE 123 (132)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999887643
No 15
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.79 E-value=4.7e-18 Score=153.52 Aligned_cols=123 Identities=30% Similarity=0.538 Sum_probs=113.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVIM 101 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVIm 101 (681)
.+|||||||++..+..++.+|+..||.|..+.++.+|++.+......||+||+|+.||+++|+++++.|+ ..+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 82 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVII 82 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEE
Confidence 4699999999999999999999999999999999999999985445699999999999999999999995 456899999
Q ss_pred EEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhhc
Q 005719 102 LSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKV 145 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk~ 145 (681)
+|+..+.....++++.||++||.||++.++|..++++++++++.
T Consensus 83 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~ 126 (143)
T 3jte_A 83 LTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKL 126 (143)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876643
No 16
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.78 E-value=5.7e-19 Score=168.69 Aligned_cols=120 Identities=22% Similarity=0.379 Sum_probs=110.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVI 100 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVI 100 (681)
..++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+ ..+.+|||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii 83 (184)
T 3rqi_A 6 SDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAE--KFEFITVXLHLGNDSGLSLIAPLCDLQPDARIL 83 (184)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTS--CCSEEEECSEETTEESHHHHHHHHHHCTTCEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEeccCCCccHHHHHHHHHhcCCCCCEE
Confidence 357999999999999999999999999999999999999999754 599999999999999999999996 45789999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
++|+..+.+.+.++++.||++||.||++.++|..+++.++++.
T Consensus 84 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~ 126 (184)
T 3rqi_A 84 VLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEV 126 (184)
T ss_dssp EEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHH
T ss_pred EEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998887654
No 17
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.78 E-value=5e-18 Score=150.46 Aligned_cols=118 Identities=24% Similarity=0.438 Sum_probs=109.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVIM 101 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVIm 101 (681)
..+||||||++..+..++.+|+..||.|..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDV--RNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIV 80 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGC--CSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 46999999999999999999999999999999999999988653 5999999999999999999999964 46899999
Q ss_pred EEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 102 LSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
+|+..+.....++++.||++||.||++.++|..+++.++++
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 81 ITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred EECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988754
No 18
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.78 E-value=1.5e-18 Score=157.23 Aligned_cols=122 Identities=23% Similarity=0.315 Sum_probs=111.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhccCCCcEE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPD-MDGFKLLEHVGLEMDLPVI 100 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPd-mDG~elLe~I~~~~dlPVI 100 (681)
.++|||||||++..+..++.+|+..||.|..+.++.+|++.+... ..||+||+|+.||+ ++|+++++.|+..+.+|||
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii 82 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGG-WYPDLILMDIELGEGMDGVQTALAIQQISELPVV 82 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcC-CCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEE
Confidence 357999999999999999999999999999999999999999752 35999999999995 9999999999766899999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
++|+..+...+.++++.||++||.||++.++|..++++++++.+
T Consensus 83 ~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 126 (140)
T 3h5i_A 83 FLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYE 126 (140)
T ss_dssp EEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999988888899999999999999999999999999987653
No 19
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.78 E-value=6e-18 Score=148.73 Aligned_cols=118 Identities=23% Similarity=0.404 Sum_probs=109.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLS 103 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLS 103 (681)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++..+.+|||+++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 81 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEY--DINLVIMDINLPGKNGLLLARELREQANVALMFLT 81 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHS--CCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEE
Confidence 5899999999999999999998899999999999999999764 49999999999999999999999755789999999
Q ss_pred cCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 104 AYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 104 a~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
+..+.....++++.||++||.||++.++|...+++++++.
T Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 121 (123)
T 1xhf_A 82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (123)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987653
No 20
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.78 E-value=6.8e-18 Score=155.17 Aligned_cols=122 Identities=30% Similarity=0.439 Sum_probs=113.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcE
Q 005719 21 PIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPV 99 (681)
Q Consensus 21 P~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPV 99 (681)
...++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+ ..+.+||
T Consensus 12 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~i 89 (153)
T 3hv2_A 12 TRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASR--EVDLVISAAHLPQMDGPTLLARIHQQYPSTTR 89 (153)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHHCTTSEE
T ss_pred cCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcC--CCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeE
Confidence 4568999999999999999999999999999999999999999865 499999999999999999999995 4578999
Q ss_pred EEEEcCCChHHHHHHHhcC-CcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 100 IMLSAYGDTKLVMKGITHG-ACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~G-A~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
|++|+..+.....+++..| |++||.||++.++|..++++++++.+
T Consensus 90 i~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~ 135 (153)
T 3hv2_A 90 ILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQH 135 (153)
T ss_dssp EEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhH
Confidence 9999999999999999999 99999999999999999999987653
No 21
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.78 E-value=4.4e-18 Score=148.92 Aligned_cols=116 Identities=27% Similarity=0.475 Sum_probs=106.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVI 100 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~-Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVI 100 (681)
++|||||||++..+..++.+|+..||+ +..+.++.+|++.+... .||+||+|+.||+++|+++++.++ ..+.+|||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~--~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii 79 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKEL--KPDIVTMDITMPEMNGIDAIKEIMKIDPNAKII 79 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEE
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEE
Confidence 479999999999999999999999999 55899999999999865 499999999999999999999995 45789999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vl 140 (681)
++|+..+.....++++.||++||.||++.++|..++++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 80 VCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999888764
No 22
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.78 E-value=4.8e-18 Score=153.79 Aligned_cols=120 Identities=21% Similarity=0.437 Sum_probs=111.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIML 102 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImL 102 (681)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+....+|||++
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~l 81 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSN--KYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYM 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHC--CCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEE
Confidence 47999999999999999999999899999999999999999764 4999999999999999999999976558999999
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 103 SAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
++..+...+.++++.||++||.||++.++|..++++++++..
T Consensus 82 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 123 (136)
T 2qzj_A 82 TYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRMN 123 (136)
T ss_dssp ESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999887543
No 23
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.78 E-value=3e-18 Score=152.42 Aligned_cols=120 Identities=29% Similarity=0.493 Sum_probs=103.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVI 100 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVI 100 (681)
.++|||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++ ..+.+|||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGF--TPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVL 83 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTC--CCSEEEECCC-----CHHHHHHHHHTTCCCCEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 468999999999999999999999999999999999999999654 599999999999999999999996 45689999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCC-ChHHHHHHHHHHHHHh
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPV-RIEELKNIWQHVIRRK 143 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPv-s~eEL~~i~q~Vlrrk 143 (681)
++|+..+.....++++.||++||.||+ +.++|..+++++++++
T Consensus 84 ~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 84 VISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp EEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 999999999999999999999999999 8999999999998764
No 24
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.78 E-value=3.9e-18 Score=150.42 Aligned_cols=116 Identities=24% Similarity=0.495 Sum_probs=107.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVIML 102 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVImL 102 (681)
.|||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKE--RPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIM 81 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHH--CCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEE
Confidence 5899999999999999999999999999999999999999765 4999999999999999999999964 578999999
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 103 SAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
|+..+.....++++.||++||.||++.++|..+++++++
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 82 TAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp ESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred EccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999988764
No 25
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.78 E-value=8.2e-18 Score=148.86 Aligned_cols=120 Identities=28% Similarity=0.519 Sum_probs=109.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCC
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQY-EVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL---EMDL 97 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy-~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~---~~dl 97 (681)
..+|||||||++..+..++.+|+..|| .|..+.++.++++.+.. ..||+||+|+.||+++|+++++.++. .+.+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~ 80 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQA--GGYGFVISDWNMPNMDGLELLKTIRAXXAMSAL 80 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTT--CCCCEEEEESCCSSSCHHHHHHHHHC--CCTTC
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh--cCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 458999999999999999999999899 78999999999998864 35999999999999999999999964 3578
Q ss_pred cEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 98 PVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 98 PVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
|||++|+..+.....++++.||++|+.||++.++|..++++++++.
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 126 (128)
T 1jbe_A 81 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 126 (128)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999987653
No 26
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.78 E-value=3e-18 Score=154.30 Aligned_cols=122 Identities=20% Similarity=0.330 Sum_probs=111.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCc
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL---EMDLP 98 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~---~~dlP 98 (681)
..+|||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+. .+.+|
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARR--PYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLA 82 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHS--CCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCC
Confidence 347999999999999999999999999999999999999999865 4999999999999999999999964 46899
Q ss_pred EEEEEcCCChHHHH-HHHhcCCcEEEeCCCChHHHHHHHHHHHHHhhc
Q 005719 99 VIMLSAYGDTKLVM-KGITHGACDYLLKPVRIEELKNIWQHVIRRKKV 145 (681)
Q Consensus 99 VImLSa~~d~e~v~-kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk~ 145 (681)
||++|+..+..... ++++.||++||.||++.++|..++++++++...
T Consensus 83 ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~ 130 (140)
T 3grc_A 83 IVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAE 130 (140)
T ss_dssp EEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC-
T ss_pred EEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 99999988777777 899999999999999999999999999987654
No 27
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.78 E-value=5.2e-18 Score=148.04 Aligned_cols=118 Identities=29% Similarity=0.392 Sum_probs=109.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLS 103 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLS 103 (681)
++||||||++..+..++.+|+..||.|..+.++.+++..+... .||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR--KPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLS 79 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHH--CCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEE
Confidence 6899999999999999999999999999999999999988754 48999999999999999999999866789999999
Q ss_pred cCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 104 AYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 104 a~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
+..+.....++++.||++|+.||++.++|...+++++++.
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999988653
No 28
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.77 E-value=7.9e-18 Score=150.81 Aligned_cols=122 Identities=23% Similarity=0.342 Sum_probs=110.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc--CCCcE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE--MDLPV 99 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~--~dlPV 99 (681)
..++||||||++..+..++.+|+..||+|..+.++.+|+..+... ..||+||+|+.||+++|+++++.|+.. +.+||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~i 84 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQ-KRIGLMITDLRMQPESGLDLIRTIRASERAALSI 84 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHC-TTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhC-CCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCE
Confidence 457999999999999999999999999999999999999998764 349999999999999999999999654 68999
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
|++|+..+.+...++++.||++||.||++.++|..++++++....
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (136)
T 3hdv_A 85 IVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGE 129 (136)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred EEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCch
Confidence 999999999999999999999999999999999999999876543
No 29
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.77 E-value=3.5e-18 Score=167.14 Aligned_cols=124 Identities=27% Similarity=0.435 Sum_probs=108.7
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHhc-----------CCCceEEEEeCCCCCCCHHH
Q 005719 19 KFPIGMRVLAVDDDPTCLKVLENFLRACQY-EVTVTNQAVTALKMLREN-----------RNNFDLVISDVHMPDMDGFK 86 (681)
Q Consensus 19 ~fP~GmRVLIVDDD~~~r~iL~~~Le~~gy-~Vt~as~a~eALe~L~e~-----------~~~pDLVLlDV~MPdmDG~e 86 (681)
....++|||||||++..+..++.+|+..|| .|..+.++.+|++.+... ...|||||+|+.||+++|++
T Consensus 57 ~~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~e 136 (206)
T 3mm4_A 57 EFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYE 136 (206)
T ss_dssp TTTTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHH
T ss_pred cccCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHH
Confidence 345678999999999999999999999998 899999999999999764 23599999999999999999
Q ss_pred HHHHHhc-----cCCCcEEEEEcCC-ChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 87 LLEHVGL-----EMDLPVIMLSAYG-DTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 87 lLe~I~~-----~~dlPVImLSa~~-d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
+++.|+. .+.+|||++|+.. +...+.++++.||++||.||++ +|..+++.++++++
T Consensus 137 l~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~~ 198 (206)
T 3mm4_A 137 ATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKRH 198 (206)
T ss_dssp HHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC----
T ss_pred HHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhhH
Confidence 9999965 3789999999998 7788899999999999999999 89999998876543
No 30
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.77 E-value=1.4e-18 Score=156.70 Aligned_cols=122 Identities=17% Similarity=0.296 Sum_probs=111.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHhc---cCCC
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRA-CQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMP-DMDGFKLLEHVGL---EMDL 97 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~-~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MP-dmDG~elLe~I~~---~~dl 97 (681)
.+|||||||++..+..++.+|+. .||+|..+.++.+|++.+... ..||+||+|+.|| +++|+++++.|+. .+.+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~ 82 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDL-DSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANT 82 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTC-CCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCC
Confidence 57999999999999999999999 899999999999999998751 4599999999999 9999999999964 5789
Q ss_pred cEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhhc
Q 005719 98 PVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKV 145 (681)
Q Consensus 98 PVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk~ 145 (681)
|||++|+..+.+.+.++++.||++||.||++.++|..++++++++...
T Consensus 83 ~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (140)
T 3lua_A 83 PVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQR 130 (140)
T ss_dssp CEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC---
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999876543
No 31
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.77 E-value=9.3e-18 Score=153.75 Aligned_cols=122 Identities=24% Similarity=0.390 Sum_probs=110.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHh-------cCCCceEEEEeCCCCCCCHHHHHHHHh
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQY--EVTVTNQAVTALKMLRE-------NRNNFDLVISDVHMPDMDGFKLLEHVG 92 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy--~Vt~as~a~eALe~L~e-------~~~~pDLVLlDV~MPdmDG~elLe~I~ 92 (681)
..++||||||++..+..++.+|+..|| .|..+.++.+|++.++. ....||+||+|+.||+++|+++++.|+
T Consensus 3 ~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr 82 (152)
T 3heb_A 3 LSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVK 82 (152)
T ss_dssp --CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 357999999999999999999999998 89999999999999961 234699999999999999999999996
Q ss_pred c---cCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 93 L---EMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 93 ~---~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
. .+.+|||++|+..+...+.++++.||++||.||++.++|..+++++.+..
T Consensus 83 ~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 136 (152)
T 3heb_A 83 ENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFF 136 (152)
T ss_dssp HSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred hcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 5 46799999999999999999999999999999999999999999986543
No 32
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.77 E-value=2.4e-18 Score=153.52 Aligned_cols=122 Identities=20% Similarity=0.282 Sum_probs=109.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVIM 101 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVIm 101 (681)
+|||||||++..+..++.+|+..||.+. .+.++.+|++.+... .||+||+|+.||+++|+++++.++ ..+.+|||+
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 79 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL--KPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII 79 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHH--CCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhc--CCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEE
Confidence 7999999999999999999999999998 899999999999865 499999999999999999999996 456899999
Q ss_pred EEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhhcCC
Q 005719 102 LSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKVGP 147 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk~~~ 147 (681)
+|+..+.....++++.||++||.||++.++|..+++++++++...+
T Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~~ 125 (134)
T 3f6c_A 80 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFP 125 (134)
T ss_dssp EECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCBCC
T ss_pred EeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCEEeC
Confidence 9999998899999999999999999999999999999998766543
No 33
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.77 E-value=9.3e-18 Score=153.87 Aligned_cols=121 Identities=18% Similarity=0.327 Sum_probs=109.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhc-----CCCceEEEEeCCCCCCCHHHHHHHHhcc
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQY--EVTVTNQAVTALKMLREN-----RNNFDLVISDVHMPDMDGFKLLEHVGLE 94 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy--~Vt~as~a~eALe~L~e~-----~~~pDLVLlDV~MPdmDG~elLe~I~~~ 94 (681)
..++||||||++..+..++.+|+..+| .|..+.++.+|++.+... ...||+||+|+.||+++|+++++.|+..
T Consensus 7 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~ 86 (149)
T 1i3c_A 7 PPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQN 86 (149)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhC
Confidence 458999999999999999999998887 788999999999998642 1359999999999999999999999654
Q ss_pred ---CCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 95 ---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 95 ---~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
+.+|||++|+..+...+.++++.||++||.||++.++|..+++++++.
T Consensus 87 ~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 137 (149)
T 1i3c_A 87 PDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESF 137 (149)
T ss_dssp TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred cCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999998764
No 34
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.77 E-value=3.4e-18 Score=151.50 Aligned_cols=119 Identities=34% Similarity=0.509 Sum_probs=109.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCC
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQY-EVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE---MDL 97 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy-~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~---~dl 97 (681)
..+|||||||++..+..++.+|+..|| .|..+.++.+|++.+... .||+||+|+.||+++|+++++.++.. +.+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~ 82 (129)
T 1p6q_A 5 EKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQN--PHHLVISDFNMPKMDGLGLLQAVRANPATKKA 82 (129)
T ss_dssp SCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTS--CCSEEEECSSSCSSCHHHHHHHHTTCTTSTTC
T ss_pred ccCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcC--CCCEEEEeCCCCCCCHHHHHHHHhcCccccCC
Confidence 457999999999999999999999899 788899999999998754 59999999999999999999999653 578
Q ss_pred cEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 98 PVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 98 PVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
|||++|+..+.....++++.||++||.||++.++|..++++++++
T Consensus 83 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 83 AFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp EEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999988754
No 35
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.77 E-value=5.2e-18 Score=152.15 Aligned_cols=122 Identities=22% Similarity=0.375 Sum_probs=112.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVI 100 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVI 100 (681)
..+|||||||++..+..++.+|+..+|.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+ ..+.+|||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLH--APDVIITDIRMPKLGGLEMLDRIKAGGAKPYVI 83 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEE
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 358999999999999999999999899999999999999999865 499999999999999999999995 44689999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhhc
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKV 145 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk~ 145 (681)
++|...+.+...++++.||++||.||++.++|..++++++++...
T Consensus 84 ~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 128 (137)
T 3hdg_A 84 VISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLA 128 (137)
T ss_dssp ECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999877643
No 36
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.77 E-value=8.4e-18 Score=168.14 Aligned_cols=121 Identities=34% Similarity=0.509 Sum_probs=112.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVI 100 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVI 100 (681)
..+|||||||++..+..++.+|+..||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+. .+.+|||
T Consensus 22 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii 99 (250)
T 3r0j_A 22 PEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARET--RPDAVILDVXMPGMDGFGVLRRLRADGIDAPAL 99 (250)
T ss_dssp SSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 468999999999999999999999999999999999999999865 4999999999999999999999964 4689999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
++|+..+...+.++++.||++||.||++.++|..+++.++++..
T Consensus 100 ~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~ 143 (250)
T 3r0j_A 100 FLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 143 (250)
T ss_dssp EEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999987653
No 37
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.77 E-value=2e-18 Score=155.60 Aligned_cols=121 Identities=20% Similarity=0.268 Sum_probs=111.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHhc-cCCCcE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPD--MDGFKLLEHVGL-EMDLPV 99 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPd--mDG~elLe~I~~-~~dlPV 99 (681)
.+|||||||++..+..++.+|+..||+|..+.++.+|++.+.. ..||+||+|+.||+ ++|+++++.|+. .+.+||
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~i 83 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQIS--DDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPT 83 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCC--TTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhc--cCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCE
Confidence 4799999999999999999999999999999999999998864 35999999999999 999999999964 468999
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhhc
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKV 145 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk~ 145 (681)
|++|+..+.+.+.++++.||++||.||++.++|..++++++++...
T Consensus 84 i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~ 129 (136)
T 3kto_A 84 IVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKE 129 (136)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC-
T ss_pred EEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999876643
No 38
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.77 E-value=8.8e-18 Score=152.26 Aligned_cols=121 Identities=18% Similarity=0.336 Sum_probs=111.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCC
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYE--VTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL---EMD 96 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~--Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~---~~d 96 (681)
..++||||||++..+..++.+|+..||. |..+.++.+|++.+... .||+||+|+.||+++|+++++.|+. .+.
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~ 81 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQA--KYDLIILDIGLPIANGFEVMSAVRKPGANQH 81 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTC--CCSEEEECTTCGGGCHHHHHHHHHSSSTTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcccccC
Confidence 3579999999999999999999999987 88999999999999754 5999999999999999999999965 468
Q ss_pred CcEEEEEcCCChHHHHHHHhcCCcEEEeCCC-ChHHHHHHHHHHHHHhh
Q 005719 97 LPVIMLSAYGDTKLVMKGITHGACDYLLKPV-RIEELKNIWQHVIRRKK 144 (681)
Q Consensus 97 lPVImLSa~~d~e~v~kAl~~GA~DYLlKPv-s~eEL~~i~q~Vlrrkk 144 (681)
+|||++|+..+.+...++++.||++||.||+ +.++|..++++++++..
T Consensus 82 ~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~ 130 (144)
T 3kht_A 82 TPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWL 130 (144)
T ss_dssp CCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999999987654
No 39
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.77 E-value=1.2e-17 Score=148.68 Aligned_cols=122 Identities=18% Similarity=0.324 Sum_probs=111.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhc-----CCCceEEEEeCCCCCCCHHHHHHHHhcc-
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQY--EVTVTNQAVTALKMLREN-----RNNFDLVISDVHMPDMDGFKLLEHVGLE- 94 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy--~Vt~as~a~eALe~L~e~-----~~~pDLVLlDV~MPdmDG~elLe~I~~~- 94 (681)
++|||||||++..+..++.+|+..|| .|..+.++.+|++.+... ...||+||+|+.||+++|+++++.|+..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 57999999999999999999999998 899999999999999752 1469999999999999999999999654
Q ss_pred --CCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 95 --MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 95 --~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
+.+|||++|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 133 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWL 133 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHc
Confidence 57999999999999999999999999999999999999999999987643
No 40
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.77 E-value=5.7e-18 Score=148.74 Aligned_cols=117 Identities=24% Similarity=0.474 Sum_probs=102.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE---MDLPVI 100 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~---~dlPVI 100 (681)
.|||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+.. +.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIAREN--KPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH--CCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 5899999999999999999999999999999999999998765 49999999999999999999999653 578999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
++|+..+.....++++.||++||.||++.++|..++++++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 80 AVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp EEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred EEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 999998888889999999999999999999999999888753
No 41
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.76 E-value=3.4e-18 Score=151.44 Aligned_cols=118 Identities=21% Similarity=0.335 Sum_probs=105.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCcE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL---EMDLPV 99 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~---~~dlPV 99 (681)
.+|||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+. .+.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTR--GYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHS--CCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEE
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCE
Confidence 46999999999999999999999999999999999999999865 4999999999999999999999965 468999
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
|++|+..+... .+++..||++||.||++.++|...+++..+..
T Consensus 81 i~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 81 VAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp EEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred EEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 99999988877 88999999999999999999999999876543
No 42
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.76 E-value=1e-17 Score=150.77 Aligned_cols=122 Identities=21% Similarity=0.285 Sum_probs=110.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcC---CCceEEEEeCCCCCCCHHHHHHHHhc---
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQY--EVTVTNQAVTALKMLRENR---NNFDLVISDVHMPDMDGFKLLEHVGL--- 93 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy--~Vt~as~a~eALe~L~e~~---~~pDLVLlDV~MPdmDG~elLe~I~~--- 93 (681)
..++||||||++..+..++.+|+..++ .|..+.++.+|++.+.... ..||+||+|+.||+++|+++++.|+.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 87 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQ 87 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCG
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhh
Confidence 457999999999999999999999999 8999999999999998611 35999999999999999999999965
Q ss_pred --cCCCcEEEEEcCCChHHHHHHHhcC-CcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 94 --EMDLPVIMLSAYGDTKLVMKGITHG-ACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 94 --~~dlPVImLSa~~d~e~v~kAl~~G-A~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
.+.+|||++++..+.....+++..| |++||.||++.++|..+++++....
T Consensus 88 ~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~ 140 (146)
T 3ilh_A 88 PMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEG 140 (146)
T ss_dssp GGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC-
T ss_pred hccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999 9999999999999999999887543
No 43
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.76 E-value=2e-17 Score=148.48 Aligned_cols=121 Identities=22% Similarity=0.365 Sum_probs=111.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh-CCCe-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCC
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRA-CQYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL---EMD 96 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~-~gy~-Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~---~~d 96 (681)
..++||||||++..+..++.+|+. .||+ |..+.++.+|++.+... .||+||+|+.||+++|+++++.|+. .+.
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ 84 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTV--KPDVVMLDLMMVGMDGFSICHRIKSTPATAN 84 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHT--CCSEEEEETTCTTSCHHHHHHHHHTSTTTTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhc--CCCEEEEecccCCCcHHHHHHHHHhCccccC
Confidence 458999999999999999999998 8999 99999999999999865 4999999999999999999999965 467
Q ss_pred CcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 97 LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 97 lPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
+|||++|+..+.....++++.||++||.||++.++|..++++++++..
T Consensus 85 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 85 IIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp SEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC
T ss_pred CcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999987654
No 44
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.76 E-value=1e-17 Score=150.42 Aligned_cols=119 Identities=22% Similarity=0.394 Sum_probs=106.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQ--YEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVI 100 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~g--y~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVI 100 (681)
++||||||++..+..++.+|+..+ +.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+. .+.+|||
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~--~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii 81 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEY--NPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVI 81 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHH--CCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEE
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhc--CCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEE
Confidence 689999999999999999999876 5677899999999998765 4899999999999999999999964 4689999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
++|+..+.....++++.||++||.||++.++|..++++++++..
T Consensus 82 ~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 125 (133)
T 3b2n_A 82 IVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEK 125 (133)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC---
T ss_pred EEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999886543
No 45
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.76 E-value=6e-18 Score=156.74 Aligned_cols=120 Identities=26% Similarity=0.416 Sum_probs=110.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPV 99 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPV 99 (681)
..+|||||||++..+..|+.+|+..||+|. .+.++.+|++.+......|||||+|+.||+++|+++++.|+ ..+.+||
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~i 114 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARV 114 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCE
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcE
Confidence 357999999999999999999999999998 99999999999987522489999999999999999999995 4578999
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
|++|+..+.+.+.++++.||++||.||++.++|..+++++++
T Consensus 115 i~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 115 IMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred EEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988764
No 46
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.76 E-value=9.4e-18 Score=153.70 Aligned_cols=124 Identities=21% Similarity=0.361 Sum_probs=111.7
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCC
Q 005719 20 FPIGMRVLAVDDDPTCLKVLENFLRACQ--YEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMD 96 (681)
Q Consensus 20 fP~GmRVLIVDDD~~~r~iL~~~Le~~g--y~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~d 96 (681)
....+|||||||++..+..++.+|+..+ +.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+ ..+.
T Consensus 17 ~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlii~D~~l~~~~g~~~~~~l~~~~~~ 94 (150)
T 4e7p_A 17 RGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKE--SVDIAILDVEMPVKTGLEVLEWIRSEKLE 94 (150)
T ss_dssp ---CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTS--CCSEEEECSSCSSSCHHHHHHHHHHTTCS
T ss_pred CCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhcc--CCCEEEEeCCCCCCcHHHHHHHHHHhCCC
Confidence 3446899999999999999999999877 7899999999999999754 599999999999999999999996 4578
Q ss_pred CcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhhc
Q 005719 97 LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKV 145 (681)
Q Consensus 97 lPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk~ 145 (681)
+|||++|+..+.+...++++.||++||.||++.++|..++++++++++.
T Consensus 95 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~ 143 (150)
T 4e7p_A 95 TKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRKE 143 (150)
T ss_dssp CEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCCE
T ss_pred CeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCEE
Confidence 9999999999999999999999999999999999999999999876544
No 47
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.76 E-value=8.7e-18 Score=149.72 Aligned_cols=119 Identities=29% Similarity=0.537 Sum_probs=108.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCc
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRAC-QYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL--EMDLP 98 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~-gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~--~~dlP 98 (681)
.+|||||||++..+..++.+|+.. +|.++ .+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~ 79 (130)
T 1dz3_A 2 SIKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEK--RPDILLLDIIMPHLDGLAVLERIRAGFEHQPN 79 (130)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHHHCSSCCE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCCHHHHHHHHHhcCCCCCc
Confidence 368999999999999999999987 88875 789999999999765 4899999999999999999999964 35788
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
||++|+..+.....++++.||++||.||++.++|..++++++++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 80 VIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp EEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999987653
No 48
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.76 E-value=1.4e-17 Score=148.88 Aligned_cols=119 Identities=27% Similarity=0.485 Sum_probs=109.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVIM 101 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVIm 101 (681)
+.|||||||++..+..+..+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETE--KPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILM 80 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhc--CCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEE
Confidence 46999999999999999999999999999999999999998765 4899999999999999999999964 46799999
Q ss_pred EEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 102 LSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
+|+..+.....++++.||++||.||++.++|...+++++++.
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (136)
T 1mvo_A 81 LTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS 122 (136)
T ss_dssp EECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC
T ss_pred EECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 999988888889999999999999999999999999988654
No 49
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.76 E-value=1.1e-17 Score=148.95 Aligned_cols=120 Identities=26% Similarity=0.358 Sum_probs=104.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCc
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL---EMDLP 98 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~---~~dlP 98 (681)
..+|||||||++..+..++.+|+ .+|.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+. .+.+|
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~p 79 (133)
T 3nhm_A 3 LKPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAH--PPDVLISDVNMDGMDGYALCGHFRSEPTLKHIP 79 (133)
T ss_dssp --CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHS--CCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCC
T ss_pred CCCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCC
Confidence 35799999999999999999998 799999999999999999865 4999999999999999999999965 35799
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhhc
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKV 145 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk~ 145 (681)
||++|+..+... .+++..||++||.||++.++|..++++++++...
T Consensus 80 ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 125 (133)
T 3nhm_A 80 VIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAEA 125 (133)
T ss_dssp EEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred EEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhcc
Confidence 999999888777 8999999999999999999999999999987644
No 50
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.76 E-value=1.4e-18 Score=180.11 Aligned_cols=118 Identities=21% Similarity=0.360 Sum_probs=107.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHhccCCCcEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMP-DMDGFKLLEHVGLEMDLPVI 100 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MP-dmDG~elLe~I~~~~dlPVI 100 (681)
+.+||||||++..+..++.+|+..||.|. .+.++.+|++.+... .|||||+|+.|| +|||+++++.|+...++|||
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~--~~dlvl~D~~MPd~mdG~e~~~~ir~~~~~piI 237 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRR--TPGLVLADIQLADGSSGIDAVKDILGRMDVPVI 237 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHC--CCSEEEEESCCTTSCCTTTTTHHHHHHTTCCEE
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhC--CCCEEEEcCCCCCCCCHHHHHHHHHhcCCCCEE
Confidence 35899999999999999999999999999 999999999999865 499999999999 79999999999765599999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
++|+..+ ...++++.||++||.||++.++|..+++.++++..
T Consensus 238 ~lT~~~~--~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~~ 279 (286)
T 3n0r_A 238 FITAFPE--RLLTGERPEPTFLITKPFQPETVKAAIGQALFFHP 279 (286)
T ss_dssp EEESCGG--GGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHSC
T ss_pred EEeCCHH--HHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 9999853 46779999999999999999999999999987653
No 51
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.76 E-value=6.5e-17 Score=157.01 Aligned_cols=121 Identities=19% Similarity=0.343 Sum_probs=109.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRAC-QYEV-TVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLP 98 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~-gy~V-t~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlP 98 (681)
..++||||||++..+..++.+|+.. +|.| ..+.++.+|++.+... .||+||+|+.||+++|+++++.|+. .+.+|
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~--~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ 81 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESL--DPDLILLDLNMPGMNGLETLDKLREKSLSGR 81 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHH--CCSEEEEETTSTTSCHHHHHHHHHHSCCCSE
T ss_pred CceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCcHHHHHHHHHHhCCCCc
Confidence 3579999999999999999999886 4887 6899999999999865 4999999999999999999999964 46899
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
||++|+..+.+.+.++++.||++||.||++.++|..+++.++++..
T Consensus 82 ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (215)
T 1a04_A 82 IVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEM 127 (215)
T ss_dssp EEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCCe
Confidence 9999999999999999999999999999999999999999987643
No 52
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.76 E-value=1e-17 Score=152.05 Aligned_cols=121 Identities=21% Similarity=0.328 Sum_probs=112.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCc
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL---EMDLP 98 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~---~~dlP 98 (681)
..++||||||++..+..+..+|+..||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+. .+.+|
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 84 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKT--HPHLIITEANMPKISGMDLFNSLKKNPQTASIP 84 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcC--CCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCC
Confidence 468999999999999999999999999999999999999999865 4999999999999999999999965 46899
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
||++|...+.....++++.||++||.||++.++|..++++++++.+
T Consensus 85 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 85 VIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp EEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987653
No 53
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.76 E-value=1.9e-17 Score=148.42 Aligned_cols=123 Identities=23% Similarity=0.334 Sum_probs=112.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHhccCCCcE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMP-DMDGFKLLEHVGLEMDLPV 99 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MP-dmDG~elLe~I~~~~dlPV 99 (681)
..++||||||++..+..++.+|+..||+|. ++.++.+|++.+.... ||+||+|+.|| +++|+++++.++..+.+||
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~--~dlii~d~~~~~~~~g~~~~~~l~~~~~~~i 85 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLR--PDIALVDIMLCGALDGVETAARLAAGCNLPI 85 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHC--CSEEEEESSCCSSSCHHHHHHHHHHHSCCCE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCC--CCEEEEecCCCCCCCHHHHHHHHHhCCCCCE
Confidence 458999999999999999999999999999 5999999999998654 99999999998 7999999999965488999
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhhcC
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKVG 146 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk~~ 146 (681)
|+++...+.....++++.||++||.||++.++|..++++++++....
T Consensus 86 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~ 132 (140)
T 3cg0_A 86 IFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKLE 132 (140)
T ss_dssp EEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHHC
T ss_pred EEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhccccC
Confidence 99999999999999999999999999999999999999998766543
No 54
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.75 E-value=2.1e-17 Score=148.95 Aligned_cols=122 Identities=18% Similarity=0.325 Sum_probs=111.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhcC--------CCceEEEEeCCCCCCCHHHHHHHH
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQY--EVTVTNQAVTALKMLRENR--------NNFDLVISDVHMPDMDGFKLLEHV 91 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy--~Vt~as~a~eALe~L~e~~--------~~pDLVLlDV~MPdmDG~elLe~I 91 (681)
.+++||||||++..+..++.+|+..|| .|..+.++.+|++.+.... ..||+||+|+.||+++|+++++.|
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l 84 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEI 84 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHH
Confidence 457999999999999999999999998 8999999999999998521 469999999999999999999999
Q ss_pred hcc---CCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 92 GLE---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 92 ~~~---~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
+.. +.+|||++|+..+.....++++.||++||.||++.++|..++++++++.
T Consensus 85 ~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 139 (149)
T 1k66_A 85 KQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYW 139 (149)
T ss_dssp TTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred HhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 754 5799999999999999999999999999999999999999999998754
No 55
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.75 E-value=1.3e-17 Score=151.04 Aligned_cols=118 Identities=25% Similarity=0.468 Sum_probs=109.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVIML 102 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVImL 102 (681)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+. .+.+|||++
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~l 82 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERS--KPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA 82 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHH--CCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 3899999999999999999998899999999999999999865 4999999999999999999999964 467999999
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 103 SAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
|+..+.....++++.||++||.||++.++|..++++++++.
T Consensus 83 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 123 (137)
T 3cfy_A 83 TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRA 123 (137)
T ss_dssp ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988654
No 56
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.75 E-value=1.3e-17 Score=160.99 Aligned_cols=122 Identities=28% Similarity=0.426 Sum_probs=111.8
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 005719 20 FPIGMRVLAVDDDPTCLKVLENFLRACQYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLP 98 (681)
Q Consensus 20 fP~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlP 98 (681)
++..+|||||||++..+..+..+|+..||.|+ .+.++.+|++.+... .||+||+|+.||+++|+++++.|+.....|
T Consensus 10 ~~m~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~--~~dlvi~D~~~p~~~g~~~~~~l~~~~~~p 87 (205)
T 1s8n_A 10 AAVPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELH--KPDLVIMDVKMPRRDGIDAASEIASKRIAP 87 (205)
T ss_dssp -CCCCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CCSEEEEESSCSSSCHHHHHHHHHHTTCSC
T ss_pred cCCCccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhc--CCCEEEEeCCCCCCChHHHHHHHHhcCCCC
Confidence 44557999999999999999999999999998 899999999999865 499999999999999999999997665679
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
||++|+..+...+.++++.||++||.||++.++|..++++++++.
T Consensus 88 ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 88 IVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp EEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998764
No 57
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.75 E-value=4.9e-18 Score=154.30 Aligned_cols=124 Identities=17% Similarity=0.283 Sum_probs=111.3
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCC
Q 005719 20 FPIGMRVLAVDDDPTCLKVLENFLRACQ-YEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDL 97 (681)
Q Consensus 20 fP~GmRVLIVDDD~~~r~iL~~~Le~~g-y~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dl 97 (681)
...+.|||||||++..+..|+.+|+..| |.|..+.++.+++..+......||+||+|+.||+++|+++++.|+ ..+.+
T Consensus 17 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ 96 (146)
T 4dad_A 17 FQGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGL 96 (146)
T ss_dssp CGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTC
T ss_pred cCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCC
Confidence 3456899999999999999999999988 999999999988887654203599999999999999999999995 45689
Q ss_pred cEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 98 PVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 98 PVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
|||++|+..+.+.+.++++.||++||.||++.++|..+++++++++
T Consensus 97 ~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 97 TCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp EEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred cEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999998764
No 58
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.75 E-value=3.6e-18 Score=150.62 Aligned_cols=118 Identities=27% Similarity=0.423 Sum_probs=108.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE---MDLPVI 100 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~---~dlPVI 100 (681)
+|||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 80 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE--PWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVV 80 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSS--SCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhc--cCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEE
Confidence 689999999999999999999999999999999999988864 359999999999999999999999654 679999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
++|+..+.....++++.||++||.||++.++|...+++++++.
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 123 (127)
T 2jba_A 81 MLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRI 123 (127)
T ss_dssp EEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCC
T ss_pred EEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhcc
Confidence 9999998889999999999999999999999999999988653
No 59
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.75 E-value=1.8e-17 Score=168.42 Aligned_cols=122 Identities=28% Similarity=0.358 Sum_probs=111.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE---MDLP 98 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~---~dlP 98 (681)
..+|||||||++..+..+...|+..+|.|..+.++.+|++.+... ..||+||+|+.||++||+++++.|+.. ..+|
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~-~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ 201 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQH-PAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLA 201 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHC-TTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcC-CCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCe
Confidence 457999999999999999999999999999999999999999754 248999999999999999999999643 3689
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
||++|+..+.....++++.||++||.||++.++|..++++++++..
T Consensus 202 ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 247 (259)
T 3luf_A 202 IIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALE 247 (259)
T ss_dssp EEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHh
Confidence 9999999999999999999999999999999999999999987654
No 60
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.75 E-value=2.8e-17 Score=150.51 Aligned_cols=127 Identities=24% Similarity=0.350 Sum_probs=110.6
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-cc
Q 005719 18 DKFPIGMRVLAVDDDPTCLKVLENFLRACQYE--VTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LE 94 (681)
Q Consensus 18 ~~fP~GmRVLIVDDD~~~r~iL~~~Le~~gy~--Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~ 94 (681)
...+.+.|||||||++..+..++.+|+..++. |..+.++.+|++.+... .||+||+|+.||+++|+++++.|+ ..
T Consensus 10 ~~~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~ 87 (152)
T 3eul_A 10 NPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAH--LPDVALLDYRMPGMDGAQVAAAVRSYE 87 (152)
T ss_dssp ----CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHH--CCSEEEEETTCSSSCHHHHHHHHHHTT
T ss_pred CCCCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 34456789999999999999999999998854 55799999999999865 499999999999999999999995 45
Q ss_pred CCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhhcC
Q 005719 95 MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKVG 146 (681)
Q Consensus 95 ~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk~~ 146 (681)
+.+|||++|+..+.....++++.||++||.||++.++|..+++.+++++...
T Consensus 88 ~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~~ 139 (152)
T 3eul_A 88 LPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVV 139 (152)
T ss_dssp CSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC---
T ss_pred CCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCeee
Confidence 7899999999999999999999999999999999999999999998876544
No 61
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.75 E-value=3.3e-17 Score=145.71 Aligned_cols=120 Identities=22% Similarity=0.383 Sum_probs=101.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC--C-Cc
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEM--D-LP 98 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~--d-lP 98 (681)
..+|||||||++..+..++.+|++.||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+... . .+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTF--EPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPK 82 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHT--CCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCE
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCCHHHHHHHHHhcCccCCCe
Confidence 357999999999999999999999999999999999999999865 499999999999999999999997543 3 44
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
||+++... .....++++.||++||.||++.++|..+++++.....
T Consensus 83 ii~~~~~~-~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 127 (132)
T 3lte_A 83 ILVVSGLD-KAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEGH 127 (132)
T ss_dssp EEEECCSC-SHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC---
T ss_pred EEEEeCCC-hHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCCC
Confidence 55555544 4588899999999999999999999999998876543
No 62
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.75 E-value=1.1e-17 Score=150.69 Aligned_cols=122 Identities=21% Similarity=0.345 Sum_probs=112.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCc
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL---EMDLP 98 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~---~~dlP 98 (681)
..++||||||++..+..++.+|+..||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+. .+.+|
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 83 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKG--FSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIA 83 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTC--CCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCC
Confidence 457999999999999999999999999999999999999999864 4999999999999999999999964 46799
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhhc
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKV 145 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk~ 145 (681)
||+++...+.....++++.||++||.||++.++|..++++++++.+.
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 130 (142)
T 3cg4_A 84 IVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRN 130 (142)
T ss_dssp EEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 99999998888888999999999999999999999999999876554
No 63
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.74 E-value=1.1e-17 Score=168.43 Aligned_cols=119 Identities=29% Similarity=0.459 Sum_probs=112.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIML 102 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImL 102 (681)
.+|||||||++..+..|+.+|+..+|.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+..+.+|||++
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~l 114 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKARED--HPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVL 114 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHS--CCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEE
Confidence 46999999999999999999999999999999999999999865 4999999999999999999999987788999999
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 103 SAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
|+..+.+.+.++++.||++||.||++.++|..+++.++++.
T Consensus 115 t~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~ 155 (249)
T 3q9s_A 115 TARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQR 155 (249)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred ECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999988654
No 64
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.74 E-value=2.8e-17 Score=148.45 Aligned_cols=118 Identities=31% Similarity=0.443 Sum_probs=105.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE---MDLPVI 100 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~---~dlPVI 100 (681)
++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+.. ..+|||
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 81 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNAT--PPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVL 81 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 6899999999999999999999999999999999999999764 49999999999999999999999643 478999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
++|+.........++..||++||.||++.++|..+++.+++++
T Consensus 82 ~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~ 124 (138)
T 3c3m_A 82 MLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARR 124 (138)
T ss_dssp EEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC
T ss_pred EEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHh
Confidence 9999877666666777788999999999999999999987643
No 65
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.74 E-value=1.5e-18 Score=155.96 Aligned_cols=119 Identities=20% Similarity=0.137 Sum_probs=108.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQ-YEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPV 99 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~g-y~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPV 99 (681)
..+|||||||++..+..++.+|+..| |+|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.|+. .+.+||
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~--~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~i 90 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPAD--TRPGIVILDLGGGDLLGKPGIVEARALWATVPL 90 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTT--CCCSEEEEEEETTGGGGSTTHHHHHGGGTTCCE
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhc--cCCCEEEEeCCCCCchHHHHHHHHHhhCCCCcE
Confidence 45799999999999999999999999 999999999999998864 45999999999999999999999964 458999
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
|++|+..+.+...++++.||++||.||++.++|..+++++++.
T Consensus 91 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 91 IAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred EEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999887653
No 66
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.74 E-value=9.1e-18 Score=151.44 Aligned_cols=120 Identities=24% Similarity=0.350 Sum_probs=101.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE---MDLPV 99 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~---~dlPV 99 (681)
.+|||||||++..+..++.+|+.. |.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+.. +.+||
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHH--HPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHH--CCSEEEEETTC------CHHHHHHTSTTCTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCE
Confidence 469999999999999999999887 9999999999999999865 49999999999999999999999654 68999
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhhc
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKV 145 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk~ 145 (681)
|++++..+.+.+.++++.||++||.||++.++|..+++.+++++..
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 125 (140)
T 3n53_A 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNY 125 (140)
T ss_dssp EEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHHH
Confidence 9999999888889999999999999999999999999999887654
No 67
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.74 E-value=4.7e-17 Score=149.22 Aligned_cols=122 Identities=25% Similarity=0.468 Sum_probs=111.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVI 100 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVI 100 (681)
..+|||||||++..+..++.+|+. +|.|..+.++.+|++.+.... .||+||+|+.||+++|+++++.|+ ..+.+|||
T Consensus 3 ~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii 80 (151)
T 3kcn_A 3 LNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSD-PFSVIMVDMRMPGMEGTEVIQKARLISPNSVYL 80 (151)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSC-CCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCC-CCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEE
Confidence 457999999999999999999976 999999999999999998642 469999999999999999999995 45789999
Q ss_pred EEEcCCChHHHHHHHhcC-CcEEEeCCCChHHHHHHHHHHHHHhhc
Q 005719 101 MLSAYGDTKLVMKGITHG-ACDYLLKPVRIEELKNIWQHVIRRKKV 145 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~G-A~DYLlKPvs~eEL~~i~q~Vlrrkk~ 145 (681)
++|+..+.....+++..| |++||.||++.++|..+++.++++...
T Consensus 81 ~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~~ 126 (151)
T 3kcn_A 81 MLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYDL 126 (151)
T ss_dssp EEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999876543
No 68
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.74 E-value=2.3e-17 Score=166.78 Aligned_cols=120 Identities=32% Similarity=0.511 Sum_probs=111.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVI 100 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVI 100 (681)
.+++||||||++..+..++.+|+..||+|..+.++.+|++.+... .||+||+|+.||+|+|+++++.|+. .+.+|||
T Consensus 128 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~--~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI 205 (254)
T 2ayx_A 128 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKN--HIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVI 205 (254)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHS--CCSEEEEEESSCSSCCHHHHHHHHHHHCCSCEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 468999999999999999999999999999999999999999865 4999999999999999999999964 4689999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
++|+..+.+...++++.||++||.||++.++|...+++++++.
T Consensus 206 ~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 248 (254)
T 2ayx_A 206 GVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERV 248 (254)
T ss_dssp EEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999987654
No 69
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.74 E-value=4.5e-17 Score=145.95 Aligned_cols=120 Identities=27% Similarity=0.448 Sum_probs=109.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHh-ccCC
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMP-----DMDGFKLLEHVG-LEMD 96 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MP-----dmDG~elLe~I~-~~~d 96 (681)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.|| +++|+++++.|+ ..+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~ 80 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREE--NPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRD 80 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHS--CEEEEEEETTTTC-----CCHHHHHHHHHHHCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcC--CCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcC
Confidence 47999999999999999999999999999999999999999865 499999999999 999999999995 4568
Q ss_pred CcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 97 LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 97 lPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
+|||++|+..+.....++++.||++||.||++.++|..++++++++..
T Consensus 81 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~ 128 (140)
T 2qr3_A 81 LPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAK 128 (140)
T ss_dssp CCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC-
T ss_pred CCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999987543
No 70
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.74 E-value=2.8e-17 Score=147.57 Aligned_cols=119 Identities=21% Similarity=0.379 Sum_probs=105.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cC----C
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EM----D 96 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~----d 96 (681)
.++|||||||++..+..++.+|+..||.|..+.++.+|++.+.. . +|+||+|+.||+++|+++++.|+. .+ .
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~-~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~ 82 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSH--E-HKVVFMDVCMPGVENYQIALRIHEKFTKQRHQ 82 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCT--T-CSEEEEECCSSTTTTTHHHHHHHHHHC-CCSC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhc--c-CCEEEEeCCCCCCcHHHHHHHHHHhhhhccCC
Confidence 46899999999999999999999999999999999999998753 2 399999999999999999999852 22 3
Q ss_pred C-cEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 97 L-PVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 97 l-PVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
. +||++|+..+.....++++.||++||.||++.++|..++++++++.
T Consensus 83 ~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 130 (136)
T 1dcf_A 83 RPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPR 130 (136)
T ss_dssp CCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCC
T ss_pred CceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhchh
Confidence 3 5888999999999999999999999999999999999999887543
No 71
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.74 E-value=3.9e-17 Score=159.03 Aligned_cols=198 Identities=24% Similarity=0.397 Sum_probs=147.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVIM 101 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVIm 101 (681)
++|||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+. .+.+|||+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ 79 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNE--PFDVVILDIMLPVHDGWEILKSMRESGVNTPVLM 79 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 47999999999999999999999999999999999999998764 4999999999999999999999964 47899999
Q ss_pred EEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhhcCCchhhhhhhhccccccCCCCCCCCCCCCCCCCCCC
Q 005719 102 LSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKVGPKDQNKLLNQENSRVGAGEGGQGAMSTGNSDQNGK 181 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk~~~k~~~~~l~~e~s~~~a~e~~~~~~s~~~s~~~g~ 181 (681)
+|+..+.....++++.||++||.||++.++|..++++++++......... ..+. -.
T Consensus 80 ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~~~~~~~~--------------------~~~~----~~ 135 (225)
T 1kgs_A 80 LTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESKSTKL--------------------VCGD----LI 135 (225)
T ss_dssp EESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHCCSCSSEE--------------------EETT----EE
T ss_pred EeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhcccccCceE--------------------EECC----EE
Confidence 99999999999999999999999999999999999999876532110000 0000 00
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCccCCCCccccchhhHHHHHHHHHHh--cCCC-CChhhHHhhcCC--CCCcHHHH
Q 005719 182 SNRKRKDQDGDEDEDGDDDGHENEDSTTQKKPRVVWTPELHRKFVGAVNQL--GVDK-AVPKKILDLMNV--EGLTRENV 256 (681)
Q Consensus 182 ~~rKRk~~~eeedEegedng~e~~~~s~~kk~r~~Wt~eLh~~F~~av~~l--G~~k-a~Pk~il~~m~v--~glt~~~v 256 (681)
.....+ ......+ ...|..+..+.+..| |..+ ..-+.|.+.+.- ..++..-|
T Consensus 136 ~~~~~~--------------------~~~~~~~---~~~Lt~rE~~vL~~l~~~~~~~~s~~eIa~~l~~~~~~~s~~tv 192 (225)
T 1kgs_A 136 LDTATK--------------------KAYRGSK---EIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWSFDDEVFSDVL 192 (225)
T ss_dssp EETTTT--------------------EEEETTE---EECCCHHHHHHHHHHHHTTTSCEEHHHHHHHCC-----CHHHHH
T ss_pred EecccC--------------------EEEECCE---EEecCHHHHHHHHHHHhCCCcccCHHHHHHHhcCCCCCCCcchH
Confidence 000000 0000000 023566666777666 5444 445788888862 34788889
Q ss_pred HHhhhhhHhhhcc
Q 005719 257 ASHLQKFRLYLKR 269 (681)
Q Consensus 257 ~ShLqkyr~~l~~ 269 (681)
+.|+.+-|..|..
T Consensus 193 ~~hi~~l~~Kl~~ 205 (225)
T 1kgs_A 193 RSHIKNLRKKVDK 205 (225)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhC
Confidence 9999988888763
No 72
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.73 E-value=7.7e-17 Score=147.93 Aligned_cols=121 Identities=26% Similarity=0.446 Sum_probs=111.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVI 100 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVI 100 (681)
.+++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+. .+.+|||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGT--SVQLVISDMRMPEMGGEVFLEQVAKSYPDIERV 83 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTS--CCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 468999999999999999999999999999999999999999754 4999999999999999999999954 5689999
Q ss_pred EEEcCCChHHHHHHHhcC-CcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 101 MLSAYGDTKLVMKGITHG-ACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~G-A~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
++|+..+.....+++..| |++||.||++.++|..++++++++..
T Consensus 84 ~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~ 128 (154)
T 2rjn_A 84 VISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAF 128 (154)
T ss_dssp EEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHH
Confidence 999999989999999998 99999999999999999999987553
No 73
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.73 E-value=3.5e-17 Score=147.66 Aligned_cols=120 Identities=28% Similarity=0.448 Sum_probs=109.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVI 100 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVI 100 (681)
..++||||||++..+..++.+|+..||+|..+.++.+|++.+... .||+||+|+ ||+++|+++++.++ ..+.+|||
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii 79 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRRE--KIDLVFVDV-FEGEESLNLIRRIREEFPDTKVA 79 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTS--CCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcc--CCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEE
Confidence 357999999999999999999999999999999999999999754 599999999 99999999999995 45679999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
+++...+.+...++++.||++||.||++.++|..++++++++..
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 80 VLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp EEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred EEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999987553
No 74
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.73 E-value=4.2e-17 Score=141.86 Aligned_cols=113 Identities=29% Similarity=0.520 Sum_probs=102.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVIML 102 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVImL 102 (681)
++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 79 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSG--NYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILL 79 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEE
Confidence 4899999999999999999999999999999999999999764 4999999999999999999999954 467999999
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 005719 103 SAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vl 140 (681)
|+..+.. .+++..||++||.||++.++|...+++++
T Consensus 80 s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 80 TAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp ESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred ECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 9886655 67889999999999999999999888764
No 75
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.73 E-value=2.7e-17 Score=158.63 Aligned_cols=119 Identities=27% Similarity=0.460 Sum_probs=109.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVIM 101 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVIm 101 (681)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.|+. .+.+|||+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~--~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ 81 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRP--EQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVF 81 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCT--TSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhc--cCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 4689999999999999999999999999999999999998864 35999999999999999999999964 46899999
Q ss_pred EEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 102 LSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
+|+..+...+.++++.||++||.||++.++|...+++++++.
T Consensus 82 ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (208)
T 1yio_A 82 ITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLN 123 (208)
T ss_dssp EESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhh
Confidence 999999888999999999999999999999999999988764
No 76
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.72 E-value=2.1e-17 Score=177.44 Aligned_cols=118 Identities=28% Similarity=0.434 Sum_probs=110.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVIML 102 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVImL 102 (681)
.|||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+|||+++++.|+ ..+.+|||++
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~--~~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~l 78 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKEL--FFPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVI 78 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHB--CCSEEEEESEETTEETTTHHHHHHHHCTTCEEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 3899999999999999999999999999999999999999865 499999999999999999999995 4578999999
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 103 SAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
|++.+.+.+.++++.||++||.||++.++|..++++++++.
T Consensus 79 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~ 119 (368)
T 3dzd_A 79 TGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEY 119 (368)
T ss_dssp ECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988654
No 77
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.72 E-value=7.1e-17 Score=148.33 Aligned_cols=121 Identities=29% Similarity=0.498 Sum_probs=110.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVI 100 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVI 100 (681)
.+++||||||++..+..++.+|+..||.|..+.++.+|++.+.. ..||+||+|+.||+++|+++++.|+ ..+.+|||
T Consensus 2 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~--~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii 79 (155)
T 1qkk_A 2 AAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSA--DFAGIVISDIRMPGMDGLALFRKILALDPDLPMI 79 (155)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCT--TCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHh--CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEE
Confidence 35799999999999999999999999999999999999998864 3599999999999999999999995 45689999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
+++...+.....+++..||++||.||++.++|..+++++++++.
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~ 123 (155)
T 1qkk_A 80 LVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR 123 (155)
T ss_dssp EEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987654
No 78
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.72 E-value=7.5e-17 Score=147.88 Aligned_cols=124 Identities=19% Similarity=0.353 Sum_probs=112.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRA-CQYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPV 99 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~-~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPV 99 (681)
.+|||||||++..+..++.+|+. .||.|. .+.++.+|++.+... .||+||+|+.||+++|+++++.|+. .+.+||
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~i 82 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRET--TPDIVVMDLTLPGPGGIEATRHIRQWDGAARI 82 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTT--CCSEEEECSCCSSSCHHHHHHHHHHHCTTCCE
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCCHHHHHHHHHHhCCCCeE
Confidence 47999999999999999999998 799998 899999999999854 4999999999999999999999954 568999
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhhcCCc
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKVGPK 148 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk~~~k 148 (681)
|+++...+.....++++.||++||.||++.++|..+++++++++.....
T Consensus 83 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~~~~ 131 (153)
T 3cz5_A 83 LIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRRAMSP 131 (153)
T ss_dssp EEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCCEECH
T ss_pred EEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCccCCh
Confidence 9999999999999999999999999999999999999999876655443
No 79
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.72 E-value=1.2e-16 Score=143.99 Aligned_cols=119 Identities=19% Similarity=0.320 Sum_probs=107.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHhc----CCCceEEEEeCCCCCCCHHHHHHHHhcc--
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQY--EVTVTNQAVTALKMLREN----RNNFDLVISDVHMPDMDGFKLLEHVGLE-- 94 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy--~Vt~as~a~eALe~L~e~----~~~pDLVLlDV~MPdmDG~elLe~I~~~-- 94 (681)
.+|||||||++..+..++.+|+..|| .|..+.++.+|++.++.. ...||+||+|+.||+++|+++++.|+..
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~ 86 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSS 86 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCcc
Confidence 47899999999999999999999888 999999999999999751 1459999999999999999999999654
Q ss_pred -CCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 95 -MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 95 -~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
+.+|||+++...+.....++++.||++||.||++.++|..++.+...
T Consensus 87 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 87 FTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp GTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred ccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999998776543
No 80
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.72 E-value=7.2e-17 Score=141.26 Aligned_cols=116 Identities=20% Similarity=0.341 Sum_probs=107.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHhcc---CCCcE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMP-DMDGFKLLEHVGLE---MDLPV 99 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MP-dmDG~elLe~I~~~---~dlPV 99 (681)
+|||||||++..+..++.+|+..||+|..+.++.+|++.+.... ||+||+|+.|| +++|+++++.++.. +.+||
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~i 83 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDR--PDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPI 83 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHC--CSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcC--CCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCE
Confidence 69999999999999999999999999999999999999998654 99999999999 99999999999654 68999
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
|++ +..+.....++++.||++|+.||++.++|...++++++.
T Consensus 84 i~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 84 VII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp EEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred EEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcC
Confidence 999 888888899999999999999999999999999988753
No 81
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.71 E-value=4.8e-17 Score=148.03 Aligned_cols=118 Identities=25% Similarity=0.438 Sum_probs=100.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh--CCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRA--CQYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPV 99 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~--~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPV 99 (681)
+|||||||++..+..+..+|.. .+|.+. .+.++.++++.+... .||+||+|+.||+++|+++++.|+ ..+.+||
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~--~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~i 80 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKH--PPNVLLTDVRMPRMDGIELVDNILKLYPDCSV 80 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTS--CCSEEEEESCCSSSCHHHHHHHHHHHCTTCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcE
Confidence 6899999999999999999963 588887 899999999988643 599999999999999999999996 4578999
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
|++|+..+...+.++++.||++||.||++.++|..+++.++++.
T Consensus 81 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 124 (141)
T 3cu5_A 81 IFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTV 124 (141)
T ss_dssp EEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999988888889999999999999999999999999887653
No 82
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.71 E-value=8.3e-17 Score=157.53 Aligned_cols=120 Identities=35% Similarity=0.523 Sum_probs=111.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVIM 101 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVIm 101 (681)
.+|||||||++..+..+..+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+. .+.+|||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATEN--RPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCV 84 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 47999999999999999999999999999999999999999764 4999999999999999999999964 47899999
Q ss_pred EEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 102 LSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
+|+..+.....++++.||++||.||++.++|...+++++++..
T Consensus 85 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (233)
T 1ys7_A 85 LSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 127 (233)
T ss_dssp EECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 9999988888999999999999999999999999999987653
No 83
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.71 E-value=2.5e-16 Score=142.07 Aligned_cols=117 Identities=26% Similarity=0.393 Sum_probs=105.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVIML 102 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVImL 102 (681)
.+||||||++..+..++.+|+.. |.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+. .+.+|||++
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~ 78 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEE--WVQVIICDQRMPGRTGVDFLTEVRERWPETVRIII 78 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHS--CEEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcC--CCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEE
Confidence 37999999999999999999875 9999999999999998764 4999999999999999999999964 467899999
Q ss_pred EcCCChHHHHHHHhc-CCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 103 SAYGDTKLVMKGITH-GACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~-GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
|+..+.....+++.. ||++||.||++.++|..++++++++.
T Consensus 79 s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 120 (139)
T 2jk1_A 79 TGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMF 120 (139)
T ss_dssp ESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred eCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHH
Confidence 999888888888876 59999999999999999999987654
No 84
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.70 E-value=5.3e-17 Score=173.50 Aligned_cols=118 Identities=27% Similarity=0.533 Sum_probs=106.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVIM 101 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVIm 101 (681)
.++||||||++..+..++.+|++.||+|..+.++.+|++.+... .||+||+|+.||+|+|+++++.|+ ..+++|||+
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~--~~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~ 82 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESE--QPDLVICDLRMPQIDGLELIRRIRQTASETPIIV 82 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHS--CCSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhC--CCCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEE
Confidence 47999999999999999999999999999999999999999865 499999999999999999999996 457899999
Q ss_pred EEcCCChHHHHHHHhcCCcEEEeCCC-ChHHHHHHHHHHHHH
Q 005719 102 LSAYGDTKLVMKGITHGACDYLLKPV-RIEELKNIWQHVIRR 142 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA~DYLlKPv-s~eEL~~i~q~Vlrr 142 (681)
+|+..+.+.+.++++.||++||.||+ ..++|..++++++++
T Consensus 83 lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~ 124 (394)
T 3eq2_A 83 LSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDR 124 (394)
T ss_dssp C---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhh
Confidence 99999999999999999999999999 688999888887754
No 85
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.70 E-value=8.9e-17 Score=157.34 Aligned_cols=118 Identities=30% Similarity=0.427 Sum_probs=110.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLS 103 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLS 103 (681)
++||||||++..+..+..+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+..+.+|||++|
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt 82 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRA--GADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVT 82 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHH--CCSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcc--CCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEe
Confidence 6999999999999999999999999999999999999998765 49999999999999999999999766889999999
Q ss_pred cCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 104 AYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 104 a~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
+..+.....++++.||++||.||++.++|..++++++++.
T Consensus 83 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 83 ARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122 (230)
T ss_dssp CCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred CCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9998888999999999999999999999999999988653
No 86
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.70 E-value=5.7e-17 Score=159.33 Aligned_cols=193 Identities=10% Similarity=0.036 Sum_probs=140.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh-CCCeEEEE-CCHHHHHHH-HHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCC
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRA-CQYEVTVT-NQAVTALKM-LRENRNNFDLVISDVHMPDMDGFKLLEHVGL--EMD 96 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~-~gy~Vt~a-s~a~eALe~-L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~--~~d 96 (681)
..+|||||||++..+..++.+|+. .+|.|+.. .+..+++.. +.. ..||+||+|+.||+++|+++++.|+. .++
T Consensus 6 ~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~--~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~ 83 (225)
T 3klo_A 6 NKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPES--RSIQMLVIDYSRISDDVLTDYSSFKHISCPD 83 (225)
T ss_dssp SSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGG--GGCCEEEEEGGGCCHHHHHHHHHHHHHHCTT
T ss_pred CceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhc--cCCCEEEEeCCCCCCCHHHHHHHHHHhhCCC
Confidence 357999999999999999999984 68888653 455555543 443 35999999999999999999999965 688
Q ss_pred CcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhhcCCchhhhhhhhccccccCCCCCCCCCCCCCC
Q 005719 97 LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKVGPKDQNKLLNQENSRVGAGEGGQGAMSTGNS 176 (681)
Q Consensus 97 lPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk~~~k~~~~~l~~e~s~~~a~e~~~~~~s~~~s 176 (681)
+|||++|+..+......+++.||++||.||++.++|..+++.++++.................
T Consensus 84 ~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~----------------- 146 (225)
T 3klo_A 84 AKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEMWLTRKLAQEYILHYR----------------- 146 (225)
T ss_dssp CEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCCBCCHHHHHHHHHHHH-----------------
T ss_pred CcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCEeeCHHHHHHHHHHhh-----------------
Confidence 999999999998899999999999999999999999999999988765443221111100000
Q ss_pred CCCCCccccCCCCCCCCCCCCCCCCCCCCCCccCCCCccccchhhHHHHHHHHHHhcCCCCChhhHHhhcCCCCCcHHHH
Q 005719 177 DQNGKSNRKRKDQDGDEDEDGDDDGHENEDSTTQKKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENV 256 (681)
Q Consensus 177 ~~~g~~~rKRk~~~eeedEegedng~e~~~~s~~kk~r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~v~glt~~~v 256 (681)
.... .. .. .....|..+..+.+..|.. ...-+.|.+.++ ++...|
T Consensus 147 --------~~~~-----~~------~~------------~~~~~Lt~rE~~vL~~l~~-g~s~~~Ia~~l~---~s~~Tv 191 (225)
T 3klo_A 147 --------AGNS-----VV------TS------------QMYAKLTKREQQIIKLLGS-GASNIEIADKLF---VSENTV 191 (225)
T ss_dssp --------TTCC-----CC------CC------------HHHHTSCHHHHHHHHHHTT-TCCHHHHHHHTT---CCHHHH
T ss_pred --------cccc-----cc------cc------------cccccCCHHHHHHHHHHHc-CCCHHHHHHHhC---CCHHHH
Confidence 0000 00 00 0123466777777777742 256678888885 678888
Q ss_pred HHhhhhhHhhhc
Q 005719 257 ASHLQKFRLYLK 268 (681)
Q Consensus 257 ~ShLqkyr~~l~ 268 (681)
..|+.+-|..|.
T Consensus 192 ~~~i~~l~~KL~ 203 (225)
T 3klo_A 192 KTHLHNVFKKIN 203 (225)
T ss_dssp HHHHHHHTTTSC
T ss_pred HHHHHHHHHHhC
Confidence 888877666554
No 87
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.70 E-value=9.3e-17 Score=159.13 Aligned_cols=117 Identities=33% Similarity=0.535 Sum_probs=109.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLS 103 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLS 103 (681)
+|||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+....+|||++|
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt 83 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVREL--RPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLT 83 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHH--CCSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEe
Confidence 6999999999999999999999999999999999999998765 49999999999999999999999766789999999
Q ss_pred cCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 104 AYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 104 a~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
+..+...+.++++.||++||.||++.++|..+++.++++
T Consensus 84 ~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 84 AKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 122 (238)
T ss_dssp ETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCC
T ss_pred CCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 999988899999999999999999999999999988754
No 88
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.70 E-value=1.9e-16 Score=170.96 Aligned_cols=118 Identities=28% Similarity=0.525 Sum_probs=110.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVIML 102 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVImL 102 (681)
|+||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+ ..+++|||++
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~--~~DlvllD~~mp~~dG~ell~~lr~~~~~~pvIvl 78 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEK--HFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVI 78 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHS--CCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Confidence 6899999999999999999998899999999999999999864 499999999999999999999995 4578999999
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 103 SAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
|+..+.+.+.++++.||++||.||++.++|..+++++++.+
T Consensus 79 T~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 79 TGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp EETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988654
No 89
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.69 E-value=2.5e-16 Score=170.87 Aligned_cols=118 Identities=32% Similarity=0.470 Sum_probs=109.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE---MDLPVI 100 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~---~dlPVI 100 (681)
.|||||||++..+..|+.+|+..||.|..+.++.+|++.+... .||+||+|+.||+|+|+++++.|+.. +.+|||
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~--~~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii 79 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARD--LPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVV 79 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEE
Confidence 4899999999999999999999999999999999999999765 49999999999999999999999653 578999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
++|+..+...+.++++.||++||.||++.++|..+++.+++..
T Consensus 80 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 80 LITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp EEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988654
No 90
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.69 E-value=4.5e-16 Score=139.81 Aligned_cols=118 Identities=20% Similarity=0.264 Sum_probs=107.1
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC-CCc
Q 005719 20 FPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEM-DLP 98 (681)
Q Consensus 20 fP~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~-dlP 98 (681)
...++|||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+|| ||+++|+++++.|+..+ .+|
T Consensus 15 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi----~~~~~g~~~~~~l~~~~~~~~ 88 (137)
T 2pln_A 15 PRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR--NYDLVM----VSDKNALSFVSRIKEKHSSIV 88 (137)
T ss_dssp CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHS--CCSEEE----ECSTTHHHHHHHHHHHSTTSE
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcC--CCCEEE----EcCccHHHHHHHHHhcCCCcc
Confidence 44578999999999999999999999999999999999999999864 499999 89999999999996447 899
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEeCCC-ChHHHHHHHHHHHHHh
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYLLKPV-RIEELKNIWQHVIRRK 143 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYLlKPv-s~eEL~~i~q~Vlrrk 143 (681)
||++++..+.....++++.||++||.||+ +.++|..++++++++.
T Consensus 89 ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 89 VLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC--
T ss_pred EEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999 9999999999887543
No 91
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.69 E-value=6.2e-16 Score=137.12 Aligned_cols=120 Identities=19% Similarity=0.359 Sum_probs=107.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHh-ccCCCcE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPD-MDGFKLLEHVG-LEMDLPV 99 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPd-mDG~elLe~I~-~~~dlPV 99 (681)
..++||||||++..+..++.+|+..||+|..+.++.+|++.+... ..||+||+|+.||+ ++|+++++.++ ..+.+||
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~i 82 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSG-AAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPI 82 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCE
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcC-CCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCE
Confidence 357999999999999999999999999999999999999999753 25999999999998 99999999995 4468999
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
|++|+..+.....+++..| +||.||++.++|..+++++++...
T Consensus 83 i~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~~ 125 (132)
T 2rdm_A 83 VYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNARE 125 (132)
T ss_dssp EEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTTC
T ss_pred EEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcCC
Confidence 9999999888888887776 799999999999999999987543
No 92
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.69 E-value=1.5e-16 Score=136.65 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=102.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE---MDLPV 99 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~---~dlPV 99 (681)
+++||||||++..+..+..+|+..||+|..+.++.++++.+... .||+||+|+.||+++|+++++.++.. +.+||
T Consensus 1 ~~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~--~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~i 78 (119)
T 2j48_A 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLL--QPIVILMAWPPPDQSCLLLLQHLREHQADPHPPL 78 (119)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH--CCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhc--CCCEEEEecCCCCCCHHHHHHHHHhccccCCCCE
Confidence 46899999999999999999999999999999999999999865 49999999999999999999999654 67999
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vl 140 (681)
|+++...+.. +++..|+++|+.||++.++|...+++++
T Consensus 79 i~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 79 VLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp EEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred EEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 9999887766 8899999999999999999998887654
No 93
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.69 E-value=1.5e-16 Score=145.71 Aligned_cols=123 Identities=22% Similarity=0.275 Sum_probs=100.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CC-eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRAC-QY-EVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPV 99 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~-gy-~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPV 99 (681)
.+|||||||++..+..++.+|+.. || .|..+.++.+|++.+... ..||+||+|+.||+++|+++++.|+ ..+.+||
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 81 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEAD-NTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAV 81 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTT-CCCSEEEECC------CHHHHHHHHHHCTTSEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhcc-CCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeE
Confidence 479999999999999999999987 88 688999999999999851 3599999999999999999999995 4568999
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhhcC
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKVG 146 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk~~ 146 (681)
|++|+..+.....++++.||++||.||++.++|..++++++++....
T Consensus 82 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~~~ 128 (154)
T 2qsj_A 82 ALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEIFL 128 (154)
T ss_dssp EEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCCBC
T ss_pred EEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCEEc
Confidence 99999998899999999999999999999999999999998766544
No 94
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.69 E-value=1.4e-16 Score=143.94 Aligned_cols=118 Identities=22% Similarity=0.377 Sum_probs=101.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc------cCC
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL------EMD 96 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~------~~d 96 (681)
.++||||||++..+..++.+|+..||.|.++.++.+|++.+... .||+||+|+.||+++|+++++.|+. .+.
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~--~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~ 87 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNR--QFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKR 87 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHS--CCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCc
Confidence 36999999999999999999998899999999999999999864 4999999999999999999999864 367
Q ss_pred CcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhhc
Q 005719 97 LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKV 145 (681)
Q Consensus 97 lPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk~ 145 (681)
+|||++++....... ...||++||.||++.++|..+++.++++...
T Consensus 88 ~~ii~~s~~~~~~~~---~~~g~~~~l~KP~~~~~L~~~i~~~~~~~~~ 133 (140)
T 3c97_A 88 ASIIAITADTIDDDR---PGAELDEYVSKPLNPNQLRDVVLTCHSEGAE 133 (140)
T ss_dssp CCCEEEESSCCSCCC---CCSSCSEEEESSCCHHHHHHHHHHHHC----
T ss_pred eEEEEEeCccchhHH---HhCChhheEeCCCCHHHHHHHHHHHhCCCCC
Confidence 899999987654432 2789999999999999999999998865443
No 95
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.69 E-value=6.1e-16 Score=139.62 Aligned_cols=119 Identities=22% Similarity=0.399 Sum_probs=102.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCc
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRAC-QYEV-TVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE-MDLP 98 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~-gy~V-t~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~-~dlP 98 (681)
..+|||||||++..+..++.+|+.. +|.+ ..+.++.+|++.+... .||+||+|+.||+++|+++++.|+.. +..|
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 85 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHN--KVDAIFLDINIPSLDGVLLAQNISQFAHKPF 85 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHC--CCSEEEECSSCSSSCHHHHHHHHTTSTTCCE
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--CCCEEEEecCCCCCCHHHHHHHHHccCCCce
Confidence 3589999999999999999999876 8885 4899999999999865 49999999999999999999999654 4566
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
||+++...+ ...++++.||++||.||++.++|..++++++++.+
T Consensus 86 ii~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (143)
T 2qv0_A 86 IVFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWE 129 (143)
T ss_dssp EEEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCHH--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHH
Confidence 888888743 57789999999999999999999999999987654
No 96
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.68 E-value=1.2e-16 Score=145.30 Aligned_cols=117 Identities=24% Similarity=0.333 Sum_probs=96.2
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 005719 19 KFPIGMRVLAVDDDPTCLKVLENFLRAC-QYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMD 96 (681)
Q Consensus 19 ~fP~GmRVLIVDDD~~~r~iL~~~Le~~-gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~d 96 (681)
..+...+||||||++..+..++.+|+.. +|.++ .+.++.+|++.+... ..||+||+|+.||+++|+++++.|+....
T Consensus 9 ~~~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~-~~~dlvilD~~l~~~~g~~~~~~lr~~~~ 87 (145)
T 3kyj_B 9 HHGSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQ-PNVDLILLDIEMPVMDGMEFLRHAKLKTR 87 (145)
T ss_dssp --CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHC-TTCCEEEECTTSCCCTTCHHHHHHHHHCC
T ss_pred CCCCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcC-CCCCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 3456779999999999999999999987 88865 899999999999864 15999999999999999999999976666
Q ss_pred CcEEEEEc--CCChHHHHHHHhcCCcEEEeCCCChHHHHHHH
Q 005719 97 LPVIMLSA--YGDTKLVMKGITHGACDYLLKPVRIEELKNIW 136 (681)
Q Consensus 97 lPVImLSa--~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~ 136 (681)
.|||+++. ..+...+.++++.||++||.||++.++|..++
T Consensus 88 ~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i 129 (145)
T 3kyj_B 88 AKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEE 129 (145)
T ss_dssp CEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------
T ss_pred CCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHH
Confidence 99999987 56667788999999999999999976665554
No 97
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.68 E-value=7.7e-17 Score=143.20 Aligned_cols=118 Identities=23% Similarity=0.358 Sum_probs=105.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVIM 101 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVIm 101 (681)
.+|||||||++..+..++.+|+..++.|..+.++.++++.+.. . ||+||+|+.||+++|+++++.|+ ..+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 79 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLN--K-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLIL 79 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCC--T-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEE
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhcc--C-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEE
Confidence 4799999999999999999999888899999999999887753 3 99999999999999999999995 457899999
Q ss_pred EEcCCCh-----HHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 102 LSAYGDT-----KLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 102 LSa~~d~-----e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
+|+..+. +...+++..||++||.||++.++|..+++++..+.
T Consensus 80 ~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 80 ISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp EESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred EEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 9998874 67778999999999999999999999999986544
No 98
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.67 E-value=7.4e-16 Score=144.19 Aligned_cols=117 Identities=24% Similarity=0.408 Sum_probs=98.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC-Ce-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQ-YE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVI 100 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~g-y~-Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVI 100 (681)
.+|||||||++..+..++.+|+..+ +. |..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+....+|||
T Consensus 25 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlvilD~~l~~~~g~~l~~~lr~~~~~~ii 102 (164)
T 3t8y_A 25 VIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELK--PDVITMDIEMPNLNGIEALKLIMKKAPTRVI 102 (164)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHHSCCEEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCceEE
Confidence 4699999999999999999999875 33 447899999999998654 9999999999999999999999755559999
Q ss_pred EEEcCCChH--HHHHHHhcCCcEEEeCCCC---------hHHHHHHHHHHHH
Q 005719 101 MLSAYGDTK--LVMKGITHGACDYLLKPVR---------IEELKNIWQHVIR 141 (681)
Q Consensus 101 mLSa~~d~e--~v~kAl~~GA~DYLlKPvs---------~eEL~~i~q~Vlr 141 (681)
+++...+.. .+.++++.||++||.||++ .++|...++.++.
T Consensus 103 ~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~ 154 (164)
T 3t8y_A 103 MVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMN 154 (164)
T ss_dssp EEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTT
T ss_pred EEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhC
Confidence 999876644 6779999999999999999 4566666655543
No 99
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.66 E-value=5.9e-16 Score=150.79 Aligned_cols=191 Identities=23% Similarity=0.309 Sum_probs=143.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVIML 102 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVImL 102 (681)
+|||||||++..+..++.+|+..| .|..+.++.+|++.+ ..||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~----~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~l 77 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE----EAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILL 77 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC----SCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 699999999999999999999888 899999999999876 35999999999999999999999964 478999999
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhhcCCchhhhhhhhccccccCCCCCCCCCCCCCCCCCCCc
Q 005719 103 SAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKVGPKDQNKLLNQENSRVGAGEGGQGAMSTGNSDQNGKS 182 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk~~~k~~~~~l~~e~s~~~a~e~~~~~~s~~~s~~~g~~ 182 (681)
|+..+.....++++.||++||.||++.++|..+++.++++.. .. . . ..+ . ... +..
T Consensus 78 t~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~-~~--~---~-----~~~--~-----~~~---~~~--- 133 (220)
T 1p2f_A 78 TLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLEREK-KG--L---Y-----DFG--D-----LKI---DAT--- 133 (220)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHCC-CS--E---E-----EET--T-----EEE---ETT---
T ss_pred EcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcccc-cc--C---c-----ccc--c-----EEE---ECC---
Confidence 999999999999999999999999999999999999987642 00 0 0 000 0 000 000
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCccCCCCccccchhhHHHHHHHHHHh--cCCC-CChhhHHhhcCCCCCcHHHHHHh
Q 005719 183 NRKRKDQDGDEDEDGDDDGHENEDSTTQKKPRVVWTPELHRKFVGAVNQL--GVDK-AVPKKILDLMNVEGLTRENVASH 259 (681)
Q Consensus 183 ~rKRk~~~eeedEegedng~e~~~~s~~kk~r~~Wt~eLh~~F~~av~~l--G~~k-a~Pk~il~~m~v~glt~~~v~Sh 259 (681)
.+ . ...+.+ ...|..+..+.+..| |..+ ..-+.|.+.+.-..++...|..|
T Consensus 134 --~~----------------~-----~~~~~~---~~~Lt~rE~~vl~~l~~~~~~~~s~~~Ia~~l~~~~~s~~tv~~~ 187 (220)
T 1p2f_A 134 --GF----------------T-----VFLKGK---RIHLPKKEFEILLFLAENAGKVVTREKLLETFWEDPVSPRVVDTV 187 (220)
T ss_dssp --TT----------------E-----EEETTE---ECCCCHHHHHHHHHHHHTTTSCEEHHHHHHHHCSSCCCTHHHHHH
T ss_pred --CC----------------E-----EEECCE---EEecCHHHHHHHHHHHHCCCceEcHHHHHHHHhCCCCCcchHHHH
Confidence 00 0 000000 023566667777776 5433 45578888887333788889999
Q ss_pred hhhhHhhhcc
Q 005719 260 LQKFRLYLKR 269 (681)
Q Consensus 260 Lqkyr~~l~~ 269 (681)
+..-|..|.-
T Consensus 188 i~~l~~Kl~~ 197 (220)
T 1p2f_A 188 IKRIRKAIED 197 (220)
T ss_dssp HHHHHHHHCS
T ss_pred HHHHHHHHhc
Confidence 9998888763
No 100
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.65 E-value=2.8e-16 Score=150.66 Aligned_cols=115 Identities=11% Similarity=0.089 Sum_probs=103.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE-MDLPVI 100 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~-~dlPVI 100 (681)
.+++||||||++..+..++.+|+..||.|..+.++.+|+ ...||+||+|+.||+++|+ +++.++.. +.+|||
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al------~~~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii 83 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF------DVPVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLV 83 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC------SSCCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEE
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC------CCCCCEEEEeCCCCccchH-HHHHHhccCCCCCEE
Confidence 357999999999999999999998999999888877766 2359999999999999999 88888655 889999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
++|+..+.+.+.++++.||++||.||++.++|...++.++++.
T Consensus 84 ~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 84 ALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp EEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred EEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887654
No 101
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.65 E-value=3.8e-16 Score=140.46 Aligned_cols=119 Identities=23% Similarity=0.270 Sum_probs=101.4
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHh-cCCCceEEEEeCCCCCCCHHHHHHHHhc-cC
Q 005719 18 DKFPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRE-NRNNFDLVISDVHMPDMDGFKLLEHVGL-EM 95 (681)
Q Consensus 18 ~~fP~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e-~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~ 95 (681)
..++.+++||||||++..+..++.+|+..||.|..+.++.+|++.+.. . .||+||+|+.||+++|+++++.|+. .+
T Consensus 10 ~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~~dlvilD~~l~~~~g~~~~~~l~~~~~ 87 (138)
T 2b4a_A 10 HHHMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLS--TCDLLIVSDQLVDLSIFSLLDIVKEQTK 87 (138)
T ss_dssp ----CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGG--SCSEEEEETTCTTSCHHHHHHHHTTSSS
T ss_pred cCCCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCC--CCCEEEEeCCCCCCCHHHHHHHHHhhCC
Confidence 345678899999999999999999999999999999999999998875 4 4999999999999999999999964 46
Q ss_pred CCcEEEEE-cCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 96 DLPVIMLS-AYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 96 dlPVImLS-a~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
.+|||++| +..+... .+++ |++||.||++.++|..++++++++
T Consensus 88 ~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~ 131 (138)
T 2b4a_A 88 QPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPS 131 (138)
T ss_dssp CCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC
T ss_pred CCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHh
Confidence 79999999 8776666 6666 999999999999999999887643
No 102
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.65 E-value=6.6e-16 Score=161.45 Aligned_cols=116 Identities=24% Similarity=0.324 Sum_probs=106.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHH-hCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcE
Q 005719 24 MRVLAVDDDPTCLKVLENFLR-ACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE---MDLPV 99 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le-~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~---~dlPV 99 (681)
++||||||++..+..++.+|. ..||.|..+.++.+|++.+... .||+||+|+.||+|+|+++++.|+.. +.+||
T Consensus 19 ~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~--~~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~i 96 (358)
T 3bre_A 19 VMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQI--KPTVILQDLVMPGVDGLTLLAAYRGNPATRDIPI 96 (358)
T ss_dssp EEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHH--CCSEEEEESBCSSSBHHHHHHHHTTSTTTTTSCE
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHhcCcccCCCcE
Confidence 579999999999999999996 4589999999999999999865 49999999999999999999999643 57999
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
|++|+..+...+.++++.||++||.||++.++|..+++.+++
T Consensus 97 i~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 97 IVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887754
No 103
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.65 E-value=1.6e-16 Score=156.56 Aligned_cols=121 Identities=23% Similarity=0.347 Sum_probs=110.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-CeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQ-YEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVI 100 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~g-y~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVI 100 (681)
+|||||||++..+..++.+|+..+ |.++ .+.++.+|++.+... .||+||+|+.||+++|+++++.|+ ..+.+|||
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~--~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii 79 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAA--RPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCL 79 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHH--CCSEEEECSEETTEEHHHHHHHHHHHCTTCEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhc--CCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 689999999999999999999876 8854 799999999999865 399999999999999999999995 45789999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhhcC
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKKVG 146 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk~~ 146 (681)
++|+..+.....++++.||++||.||++.++|..+++.++++....
T Consensus 80 ~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~ 125 (225)
T 3c3w_A 80 ILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRSLL 125 (225)
T ss_dssp EGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGGGS
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCeee
Confidence 9999999999999999999999999999999999999999876543
No 104
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.63 E-value=1.6e-15 Score=147.97 Aligned_cols=113 Identities=21% Similarity=0.312 Sum_probs=104.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC-CCcEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEM-DLPVIML 102 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~-dlPVImL 102 (681)
||||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+|| ||+++|+++++.|+..+ ++|||++
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi----lp~~~g~~~~~~lr~~~~~~~ii~l 74 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR--NYDLVM----VSDKNALSFVSRIKEKHSSIVVLVS 74 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTS--CCSEEE----ECCTTHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcC--CCCEEE----eCCCCHHHHHHHHHhCCCCCcEEEE
Confidence 6899999999999999999999999999999999999998753 599999 99999999999996446 8999999
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCCC-ChHHHHHHHHHHHHH
Q 005719 103 SAYGDTKLVMKGITHGACDYLLKPV-RIEELKNIWQHVIRR 142 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~DYLlKPv-s~eEL~~i~q~Vlrr 142 (681)
|+..+...+.++++.||++||.||+ +.++|..++++++++
T Consensus 75 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 75 SDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 115 (223)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSS
T ss_pred ECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999 999999999998764
No 105
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.62 E-value=1.2e-15 Score=164.32 Aligned_cols=121 Identities=21% Similarity=0.313 Sum_probs=105.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRA-CQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE-MDLPVI 100 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~-~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~-~dlPVI 100 (681)
.+|||||||++..+..++.+|+. .+|.|..+.++.+|++.+... ..||+||+|+.||+|||+++++.++.. +..|||
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~-~~~DlvllDi~mP~~dG~ell~~l~~~~~~~~ii 81 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESC-GHVDIAICDLQMSGMDGLAFLRHASLSGKVHSVI 81 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHH-SCEEEEEECSSCSSSCHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhC-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCceEE
Confidence 37999999999999999999988 578999999999999999763 249999999999999999999999644 445677
Q ss_pred EEEcCCCh-----HHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHhh
Q 005719 101 MLSAYGDT-----KLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRKK 144 (681)
Q Consensus 101 mLSa~~d~-----e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrkk 144 (681)
++|+.++. ..+.+++..||++||.||++.++|..++++++++..
T Consensus 82 ~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~~ 130 (400)
T 3sy8_A 82 LSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARRQ 130 (400)
T ss_dssp ESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHTT
T ss_pred EEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhhh
Confidence 77777665 567889999999999999999999999999887643
No 106
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.62 E-value=2.4e-17 Score=144.05 Aligned_cols=119 Identities=32% Similarity=0.444 Sum_probs=107.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVIM 101 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVIm 101 (681)
..+||||||++..+..++.+|+..||.|..+.++.++++.+.. ..||+||+|+.||+++|+++++.++ ..+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 80 (124)
T 1dc7_A 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALAS--KTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII 80 (124)
T ss_dssp CCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSS--CCCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhc--CCCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEE
Confidence 3579999999999999999999889999999999999998864 3599999999999999999999985 356899999
Q ss_pred EEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 102 LSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
+|+..+.....++++.||++|+.||++.++|...++++++++
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 81 MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp BCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred EecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 999988888889999999999999999999999999988653
No 107
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.56 E-value=2.8e-14 Score=152.44 Aligned_cols=117 Identities=26% Similarity=0.448 Sum_probs=101.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRAC-QYE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVI 100 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~-gy~-Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVI 100 (681)
.+|||||||++..+..++.+|+.. +|+ |..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+....+|||
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~~--pDlVllDi~mp~~dGlell~~l~~~~p~pVI 80 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFN--PDVLTLDVEMPRMDGLDFLEKLMRLRPMPVV 80 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEEECCCSSSCHHHHHHHHHHSSCCCEE
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhccC--CCEEEEECCCCCCCHHHHHHHHHhcCCCcEE
Confidence 379999999999999999999986 898 568999999999998654 9999999999999999999999755559999
Q ss_pred EEEcCCCh--HHHHHHHhcCCcEEEeCCCCh---------HHHHHHHHHHHH
Q 005719 101 MLSAYGDT--KLVMKGITHGACDYLLKPVRI---------EELKNIWQHVIR 141 (681)
Q Consensus 101 mLSa~~d~--e~v~kAl~~GA~DYLlKPvs~---------eEL~~i~q~Vlr 141 (681)
++|+..+. +...++++.||++||.||++. ++|...++++.+
T Consensus 81 vlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~ 132 (349)
T 1a2o_A 81 MVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAAR 132 (349)
T ss_dssp EEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHh
Confidence 99998765 458899999999999999983 667777776654
No 108
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.52 E-value=1.7e-14 Score=146.52 Aligned_cols=103 Identities=18% Similarity=0.281 Sum_probs=86.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRA-CQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIML 102 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~-~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImL 102 (681)
.|||||||++..+..|...|+. .+|.|..+ ++.++++.+. ...||+||+|+.||+++|+++++.++. ..+|||++
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~-~~~~~~~~~~--~~~~dlvllD~~mP~~~G~~~~~~lr~-~~~pvi~l 80 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEIDAF-DTLEGARHCQ--GDEYVVALVDLTLPDAPSGEAVKVLLE-RGLPVVIL 80 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEEEE-SSTGGGTTCC--TTTEEEEEEESCBTTBTTSHHHHHHHH-TTCCEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEEEe-ChHHHHHHhh--cCCCcEEEEeCCCCCCCHHHHHHHHHh-CCCCEEEE
Confidence 5899999999999999999976 47777655 4455555443 246999999999999999999999975 36999999
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCCCChH
Q 005719 103 SAYGDTKLVMKGITHGACDYLLKPVRIE 130 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~DYLlKPvs~e 130 (681)
|+..+.+.+.++++.||++||.||+...
T Consensus 81 t~~~~~~~~~~a~~~Ga~dyl~Kp~~~~ 108 (259)
T 3luf_A 81 TADISEDKREAWLEAGVLDYVMKDSRHS 108 (259)
T ss_dssp ECC-CHHHHHHHHHTTCCEEEECSSHHH
T ss_pred EccCCHHHHHHHHHCCCcEEEeCCchhH
Confidence 9999999999999999999999997543
No 109
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.49 E-value=3.4e-14 Score=165.75 Aligned_cols=119 Identities=13% Similarity=0.164 Sum_probs=108.0
Q ss_pred cEEEEEeCCH-HH-------HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC----CCHHHHHHHH
Q 005719 24 MRVLAVDDDP-TC-------LKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPD----MDGFKLLEHV 91 (681)
Q Consensus 24 mRVLIVDDD~-~~-------r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPd----mDG~elLe~I 91 (681)
|||||||||+ .. ++.|+..|++.||+|..+.++.+|++.+... ..||+||+|+.||+ ++|+++++.|
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~-~~~d~vilDi~lp~~~~~~~G~~ll~~i 79 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTT-CCCSEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCcccccccHHHHHHHH
Confidence 5999999999 88 9999999999999999999999999998753 24999999999999 9999999999
Q ss_pred hcc-CCCcEEEEEcCCC-hHHHHHHHhcCCcEEEeCCCChHH-HHHHHHHHHHHh
Q 005719 92 GLE-MDLPVIMLSAYGD-TKLVMKGITHGACDYLLKPVRIEE-LKNIWQHVIRRK 143 (681)
Q Consensus 92 ~~~-~dlPVImLSa~~d-~e~v~kAl~~GA~DYLlKPvs~eE-L~~i~q~Vlrrk 143 (681)
+.. .++||||+|+..+ .+....++..||+||+.||++..| |..+++.++|+.
T Consensus 80 R~~~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~ 134 (755)
T 2vyc_A 80 HERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_dssp HHHSTTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHh
Confidence 654 5899999999877 777788899999999999999999 888999998874
No 110
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=98.85 E-value=5.1e-08 Score=105.56 Aligned_cols=117 Identities=26% Similarity=0.344 Sum_probs=99.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE---MDLPV 99 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~---~dlPV 99 (681)
+.+|++|||+...+..+...|.. .+.+....+..+++. ... ..||+|++|+.||+|+|+++++.++.. ..+||
T Consensus 152 ~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~-~~~--~~~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~pi 227 (459)
T 1w25_A 152 GGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKI-SAG--GPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPV 227 (459)
T ss_dssp SCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHH-HHH--SSCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCCE
T ss_pred CCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhh-hcc--CCCCEEEEecCCCCCcHHHHHHHHHhCccccCCcE
Confidence 46899999999988888888865 567777888877753 332 358999999999999999999988643 46899
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
|++++..+.....++++.||.+|+.||+..+++...+..+++++
T Consensus 228 i~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~ 271 (459)
T 1w25_A 228 LAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRK 271 (459)
T ss_dssp EEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888776554
No 111
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.79 E-value=4.6e-09 Score=102.25 Aligned_cols=92 Identities=23% Similarity=0.383 Sum_probs=75.0
Q ss_pred CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCC
Q 005719 48 YEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126 (681)
Q Consensus 48 y~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKP 126 (681)
+.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+..++++++.....+.+.++++.||++|+.||
T Consensus 6 ~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~~p~~~g~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~kp 83 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKELK--PDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNT 83 (237)
T ss_dssp EEEECCCSSSTTHHHHHHHC--CSCEEEECCSTTSSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEESH
T ss_pred EEEEECCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHCCHHheEeCC
Confidence 34445778889999887654 899999999999999999999863 455677777777778899999999999999999
Q ss_pred --CChHHHHHHHHHHHH
Q 005719 127 --VRIEELKNIWQHVIR 141 (681)
Q Consensus 127 --vs~eEL~~i~q~Vlr 141 (681)
++..++...+.+.+.
T Consensus 84 ~~~~~~~l~~~i~~~~~ 100 (237)
T 3cwo_X 84 AAVENPSLITQIAQTFG 100 (237)
T ss_dssp HHHHCTHHHHHHHHHHT
T ss_pred cccChHHHHHHHHHHhC
Confidence 777788777766654
No 112
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.06 E-value=0.001 Score=66.61 Aligned_cols=97 Identities=13% Similarity=0.072 Sum_probs=71.4
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 005719 20 FPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPV 99 (681)
Q Consensus 20 fP~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPV 99 (681)
-..|.|||||||++..+..|..+|+..|++|+.+.. .....+|+||+|..+|...+. ..+
T Consensus 8 ~l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~---------~~~~~~~~ii~d~~~~~~~~~-----------~~~ 67 (254)
T 2ayx_A 8 GLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG---------QEPTPEDVLITDEVVSKKWQG-----------RAV 67 (254)
T ss_dssp TTTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS---------CCCCTTCEEEEESSCSCCCCS-----------SEE
T ss_pred ccCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC---------CCCCcCcEEEEcCCCcccccc-----------ceE
Confidence 357889999999999999999999999999988764 123468999999999875431 125
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vl 140 (681)
|.++...... ....+...++.||+...++..++.+++
T Consensus 68 i~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~ 104 (254)
T 2ayx_A 68 VTFCRRHIGI----PLEKAPGEWVHSVAAPHELPALLARIY 104 (254)
T ss_dssp EEECSSCCCS----CCTTSTTEEEECSSCCSHHHHHHHHHH
T ss_pred EEEecccCCC----cccccCCceeccccchHHHHHHHHHHh
Confidence 5555432110 113345679999999988887777664
No 113
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=96.35 E-value=0.0055 Score=71.39 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=77.2
Q ss_pred HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEEEEEcCCChHHHHHH
Q 005719 36 LKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVIMLSAYGDTKLVMKG 114 (681)
Q Consensus 36 r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVImLSa~~d~e~v~kA 114 (681)
.+.|.+.|++.||+|..+.+..+|+.+++.+ ..++.||+|+.++ +.++++.|+ ...++||++++.......+.-.
T Consensus 19 i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~-~~i~avIld~d~~---~~~ll~~Ir~~~~~iPVFl~~~~~~~~~~~~~ 94 (715)
T 3n75_A 19 IRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDKY---NLELCEEISKMNENLPLYAFANTYSTLDVSLN 94 (715)
T ss_dssp HHHHHHHHHHTTCEEECCSSHHHHHHHHHHC-TTEEEEEEEHHHH---HHHHHHHHHHHCTTCEEEEECCTTCCCCGGGT
T ss_pred HHHHHHHHHHCCcEEEEeCCHHHHHHHHHhC-CCceEEEEecccc---HHHHHHHHHHhCCCCCEEEEecCCcccccchh
Confidence 4456688888899999999999999999875 4689999999886 688999995 5679999999887543333222
Q ss_pred HhcCCcEEEeCCCCh-HHHHHHHHHHHHH
Q 005719 115 ITHGACDYLLKPVRI-EELKNIWQHVIRR 142 (681)
Q Consensus 115 l~~GA~DYLlKPvs~-eEL~~i~q~Vlrr 142 (681)
...++++|+.+..+. +.+...+.+.+++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (715)
T 3n75_A 95 DLRLQISFFEYALGAAEDIANKIKQTTDE 123 (715)
T ss_dssp TSCCEEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred hhhccCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 245788999988654 4445555554443
No 114
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=96.34 E-value=0.0082 Score=53.59 Aligned_cols=101 Identities=20% Similarity=0.277 Sum_probs=79.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCC-CCCCHHHHHHHHhc---cCCCcEE
Q 005719 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHM-PDMDGFKLLEHVGL---EMDLPVI 100 (681)
Q Consensus 25 RVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~M-PdmDG~elLe~I~~---~~dlPVI 100 (681)
.||+|..|-..--.+++++....|++++...... ....|+|+|+..+ |+ .+.. ....-+|
T Consensus 14 ~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~~--------e~~AdlIfCEYlLLPe--------~ifS~k~~~~~dli 77 (121)
T 3q7r_A 14 HVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYKQ--------ELSADLVVCEYSLLPR--------EIRSPKSLEGSFVL 77 (121)
T ss_dssp EEEEECSCHHHHHHHHHHSCTTTEEEEEESSCCC--------CTTEEEEEEEGGGSCT--------TCCCCTTCCSCEEE
T ss_pred EEEEEecCchhhHHHHHhcCCcceeEEeccccCC--------cccceeEEEeeecChH--------HhcCCCCCCcccEE
Confidence 5899999999999999999878899998764322 2347999999854 32 1211 1223478
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
++-..-+.+.+.+.+..||. ||+.|+...-|..+|+..+|.
T Consensus 78 VLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrq 118 (121)
T 3q7r_A 78 VLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQ 118 (121)
T ss_dssp EEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHH
T ss_pred EEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhc
Confidence 88888889999999999999 999999999999999998875
No 115
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=94.86 E-value=0.16 Score=48.57 Aligned_cols=81 Identities=15% Similarity=0.244 Sum_probs=62.1
Q ss_pred CHHHHHHHHHhcCCCceEEEEeC-CCCCCCH--HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEE------eC
Q 005719 55 QAVTALKMLRENRNNFDLVISDV-HMPDMDG--FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYL------LK 125 (681)
Q Consensus 55 ~a~eALe~L~e~~~~pDLVLlDV-~MPdmDG--~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYL------lK 125 (681)
+..+.++.+... ...++++.++ .++.++| .++++.+....++|||++++....+...++++.||++++ .+
T Consensus 131 ~~~~~i~~~~~~-~~~~vli~~~~~~g~~~g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~ 209 (237)
T 3cwo_X 131 LLRDWVVEVEKR-GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 209 (237)
T ss_dssp EHHHHHHHHHHH-TCSEEEEEETTTTTCCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTT
T ss_pred CHHHHHHHHhhc-CCCeEEEEecCCCCccccccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcC
Confidence 455666655543 2356899987 5666666 456777766678999999999999999999999999985 68
Q ss_pred CCChHHHHHHH
Q 005719 126 PVRIEELKNIW 136 (681)
Q Consensus 126 Pvs~eEL~~i~ 136 (681)
|++..+++..+
T Consensus 210 ~~~~~~~~~~l 220 (237)
T 3cwo_X 210 EIDVRELKEYL 220 (237)
T ss_dssp SSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 88888887643
No 116
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=93.94 E-value=1.2 Score=42.23 Aligned_cols=118 Identities=16% Similarity=0.171 Sum_probs=79.6
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCC-CC-HHHHHHHHhc
Q 005719 23 GMRVLAV----DDDPTCLKVLENFLRACQYEVTVT---NQAVTALKMLRENRNNFDLVISDVHMPD-MD-GFKLLEHVGL 93 (681)
Q Consensus 23 GmRVLIV----DDD~~~r~iL~~~Le~~gy~Vt~a---s~a~eALe~L~e~~~~pDLVLlDV~MPd-mD-G~elLe~I~~ 93 (681)
..||++. |-+..-...+..+|+..||+|... ....+.++.+.+. .+|+|.+...+.. +. --++++.++.
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~--~~diV~lS~~~~~~~~~~~~~i~~L~~ 95 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQE--DVDVIGVSILNGAHLHLMKRLMAKLRE 95 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHT--TCSEEEEEESSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhc--CCCEEEEEeechhhHHHHHHHHHHHHh
Confidence 4588888 888888899999999999999854 3567777877765 4999999887753 22 2234455543
Q ss_pred c--CCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 94 E--MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 94 ~--~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
. .+++|++ .+..-......+.+.||+.++..--+.++....++.++..+
T Consensus 96 ~g~~~i~v~v-GG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~~ 146 (161)
T 2yxb_A 96 LGADDIPVVL-GGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEEK 146 (161)
T ss_dssp TTCTTSCEEE-EECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEE-eCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHHh
Confidence 3 2566554 44444444445668999876655455566666666666543
No 117
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=89.40 E-value=12 Score=34.02 Aligned_cols=112 Identities=10% Similarity=-0.022 Sum_probs=70.9
Q ss_pred EEEEE----eCCHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHhcCCCceEEEEeCCCCC-CC-HHHHHHHHhcc-
Q 005719 25 RVLAV----DDDPTCLKVLENFLRACQYEVT---VTNQAVTALKMLRENRNNFDLVISDVHMPD-MD-GFKLLEHVGLE- 94 (681)
Q Consensus 25 RVLIV----DDD~~~r~iL~~~Le~~gy~Vt---~as~a~eALe~L~e~~~~pDLVLlDV~MPd-mD-G~elLe~I~~~- 94 (681)
||++. |-+..-...+..+|+..||+|. ......+.++.+.+.+ +|+|.+...+.. +. --++++.++..
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~--~d~v~lS~~~~~~~~~~~~~i~~l~~~g 82 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETK--ADAILVSSLYGQGEIDCKGLRQKCDEAG 82 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHT--CSEEEEEECSSTHHHHHTTHHHHHHHTT
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC--CCEEEEEecCcCcHHHHHHHHHHHHhcC
Confidence 55555 5666777788889999999998 3456888888887654 899999887743 11 12344555332
Q ss_pred C-CCcEEEEEcC----CChH-HHHHHHhcCCcEEEeCCCChHHHHHHHHH
Q 005719 95 M-DLPVIMLSAY----GDTK-LVMKGITHGACDYLLKPVRIEELKNIWQH 138 (681)
Q Consensus 95 ~-dlPVImLSa~----~d~e-~v~kAl~~GA~DYLlKPvs~eEL~~i~q~ 138 (681)
. +++|++=-.. .+.. ....+.+.|++.|+.---...++...+..
T Consensus 83 ~~~i~v~vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~ 132 (137)
T 1ccw_A 83 LEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKK 132 (137)
T ss_dssp CTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHH
T ss_pred CCCCEEEEECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 2 4665443321 1222 24457789998888665666665554443
No 118
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=89.27 E-value=0.51 Score=40.54 Aligned_cols=58 Identities=28% Similarity=0.358 Sum_probs=39.0
Q ss_pred CCCccccchhhHHHHHHHHHHhcCCCCChhhHHhh---c-CC-------------CCCcHHHHHHhhhhhHhhhcc
Q 005719 211 KKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDL---M-NV-------------EGLTRENVASHLQKFRLYLKR 269 (681)
Q Consensus 211 kk~r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~---m-~v-------------~glt~~~v~ShLqkyr~~l~~ 269 (681)
++..-+|.++|-.-|++|++..-... .-|.+|.. | +- .--|+.+|+||||--|...+|
T Consensus 3 ~~~e~vW~~~lE~aF~eaL~~yp~~g-~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~ 77 (82)
T 2hzd_A 3 NDAEGVWSPDIEQSFQEALSIYPPCG-RRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSR 77 (82)
T ss_dssp GGGSCCSCHHHHHHHHHHHHHSCSSS-CCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTT
T ss_pred CCcCCcCCHHHHHHHHHHHHHcCCCC-ccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhh
Confidence 34567999999999999999972110 11222311 1 10 234999999999998887766
No 119
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=88.48 E-value=2.2 Score=42.73 Aligned_cols=99 Identities=15% Similarity=0.234 Sum_probs=68.8
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCC------CCCCCHHHHHHHH
Q 005719 23 GMRVLAVDD----DPTCLKVLENFLRACQYEVT-VTNQAVTALKMLRENRNNFDLVISDVH------MPDMDGFKLLEHV 91 (681)
Q Consensus 23 GmRVLIVDD----D~~~r~iL~~~Le~~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~------MPdmDG~elLe~I 91 (681)
|..+++++- ++.....+.+.+++.|..+. .+.+..++.++.. ..+|+|.+-.+ .+...++++++.+
T Consensus 101 Gad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~---~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l 177 (229)
T 3q58_A 101 GADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQ---KGIEFIGTTLSGYTGPITPVEPDLAMVTQL 177 (229)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHH---TTCSEEECTTTTSSSSCCCSSCCHHHHHHH
T ss_pred CCCEEEECccccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHh---CCCCEEEecCccCCCCCcCCCCCHHHHHHH
Confidence 555555553 34344455555566676554 4567777777665 34899865322 2234568889988
Q ss_pred hccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 92 GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 92 ~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
... ++|||.-..-.+.+.+.++++.||+.+++-
T Consensus 178 ~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 178 SHA-GCRVIAEGRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp HTT-TCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 655 899999998889999999999999999875
No 120
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=87.70 E-value=2.8 Score=43.20 Aligned_cols=98 Identities=14% Similarity=0.082 Sum_probs=66.0
Q ss_pred HHHHHHhCCCeEE-EE-CCHHHHHHHHHhcCCCceEEEEeCCCCC-----CCHHHHHHHHhccCCCcEEEEEcCCChHHH
Q 005719 39 LENFLRACQYEVT-VT-NQAVTALKMLRENRNNFDLVISDVHMPD-----MDGFKLLEHVGLEMDLPVIMLSAYGDTKLV 111 (681)
Q Consensus 39 L~~~Le~~gy~Vt-~a-s~a~eALe~L~e~~~~pDLVLlDV~MPd-----mDG~elLe~I~~~~dlPVImLSa~~d~e~v 111 (681)
..+.|.+.||.|. .+ .+...|.++.. . .+++| +....|. ..-+++++.|....++|||+=..-...+.+
T Consensus 127 aa~~L~~~Gf~Vlpy~~dd~~~akrl~~-~--G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDA 202 (265)
T 1wv2_A 127 AAEQLVKDGFDVMVYTSDDPIIARQLAE-I--GCIAV-MPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDA 202 (265)
T ss_dssp HHHHHHTTTCEEEEEECSCHHHHHHHHH-S--CCSEE-EECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHH
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHH-h--CCCEE-EeCCccCCCCCCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHH
Confidence 3344556699988 34 45555554443 2 36777 5544442 223788998877789999987777899999
Q ss_pred HHHHhcCCcEEEeC-----CCChHHHHHHHHHHH
Q 005719 112 MKGITHGACDYLLK-----PVRIEELKNIWQHVI 140 (681)
Q Consensus 112 ~kAl~~GA~DYLlK-----Pvs~eEL~~i~q~Vl 140 (681)
.++++.||+..++- --++..+...+...+
T Consensus 203 a~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av 236 (265)
T 1wv2_A 203 AIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAI 236 (265)
T ss_dssp HHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHH
Confidence 99999999998754 334555555555544
No 121
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.41 E-value=1.1 Score=36.98 Aligned_cols=54 Identities=26% Similarity=0.349 Sum_probs=41.7
Q ss_pred CccccchhhHHHHHHHHHHhcCCCCCh---hhHHhhcCCCCCcHHHHHHhhhhhHhhhc
Q 005719 213 PRVVWTPELHRKFVGAVNQLGVDKAVP---KKILDLMNVEGLTRENVASHLQKFRLYLK 268 (681)
Q Consensus 213 ~r~~Wt~eLh~~F~~av~~lG~~ka~P---k~il~~m~v~glt~~~v~ShLqkyr~~l~ 268 (681)
.+-.||+|=+.+|+++|...|.+...| ++|.+.| +|-|..+|+.|.|||-.-+.
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHHH
Confidence 345799999999999999999654223 3566665 78999999999888865443
No 122
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=82.87 E-value=6 Score=39.50 Aligned_cols=99 Identities=18% Similarity=0.232 Sum_probs=67.6
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCC------CCCCCHHHHHHHH
Q 005719 23 GMRVLAVDD----DPTCLKVLENFLRACQYEVT-VTNQAVTALKMLRENRNNFDLVISDVH------MPDMDGFKLLEHV 91 (681)
Q Consensus 23 GmRVLIVDD----D~~~r~iL~~~Le~~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~------MPdmDG~elLe~I 91 (681)
|..+++++- ++.....+.+.+++.|..+. .+.+..++.++.. ..+|+|.+-.+ .....++++++.+
T Consensus 101 Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~---~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l 177 (232)
T 3igs_A 101 GAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCSSVDDGLACQR---LGADIIGTTMSGYTTPDTPEEPDLPLVKAL 177 (232)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHH---TTCSEEECTTTTSSSSSCCSSCCHHHHHHH
T ss_pred CCCEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHh---CCCCEEEEcCccCCCCCCCCCCCHHHHHHH
Confidence 455555543 34344455555566676554 4567777776664 34898864322 1233468888888
Q ss_pred hccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 92 GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 92 ~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
... ++|||.-..-.+.+.+.++++.||+.+++-
T Consensus 178 ~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (232)
T 3igs_A 178 HDA-GCRVIAEGRYNSPALAAEAIRYGAWAVTVG 210 (232)
T ss_dssp HHT-TCCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred Hhc-CCcEEEECCCCCHHHHHHHHHcCCCEEEEe
Confidence 655 899999988888999999999999999764
No 123
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=82.67 E-value=12 Score=37.62 Aligned_cols=111 Identities=15% Similarity=0.143 Sum_probs=73.1
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCC-CCHH-HHHHHHh
Q 005719 22 IGMRVLAV----DDDPTCLKVLENFLRACQYEVTVTN---QAVTALKMLRENRNNFDLVISDVHMPD-MDGF-KLLEHVG 92 (681)
Q Consensus 22 ~GmRVLIV----DDD~~~r~iL~~~Le~~gy~Vt~as---~a~eALe~L~e~~~~pDLVLlDV~MPd-mDG~-elLe~I~ 92 (681)
.+-+||+. |-+..-...+..+|+..||+|.... ...+.++.+.+. .+|+|.+-..+.. +..+ ++++.++
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~--~~d~V~lS~l~~~~~~~~~~~i~~l~ 199 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKE--KPIMLTGTALMTTTMYAFKEVNDMLL 199 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHH--CCSEEEEECCCTTTTTHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEEeeccCCHHHHHHHHHHHH
Confidence 35688888 7778888899999999999997543 456666777655 4899999987764 4443 4566664
Q ss_pred c-cCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 005719 93 L-EMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140 (681)
Q Consensus 93 ~-~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vl 140 (681)
. ..++||++-......+.. -..||+.|..-. .+....++.++
T Consensus 200 ~~~~~~~v~vGG~~~~~~~~---~~igad~~~~da---~~av~~~~~l~ 242 (258)
T 2i2x_B 200 ENGIKIPFACGGGAVNQDFV---SQFALGVYGEEA---ADAPKIADAII 242 (258)
T ss_dssp TTTCCCCEEEESTTCCHHHH---HTSTTEEECSST---THHHHHHHHHH
T ss_pred hcCCCCcEEEECccCCHHHH---HHcCCeEEECCH---HHHHHHHHHHH
Confidence 3 356777665544444332 377987665433 44445555554
No 124
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=82.15 E-value=3.1 Score=34.09 Aligned_cols=52 Identities=23% Similarity=0.182 Sum_probs=41.0
Q ss_pred CCCccccchhhHHHHHHHHHHhcCCCCChhhHHhhcCCCCCcHHHHHHhhhhhHhhh
Q 005719 211 KKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFRLYL 267 (681)
Q Consensus 211 kk~r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~v~glt~~~v~ShLqkyr~~l 267 (681)
...+-.||+|=+..|+++|+++|. -=+.|.+. ++|-|..+|+.|.++|-..+
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~---~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGR---RWTKISKL--IGSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCS---CHHHHHHH--HSSSCHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCc---CHHHHHHH--cCCCCHHHHHHHHHHHHHHH
Confidence 345668999999999999999995 23566665 48999999999988775443
No 125
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=81.56 E-value=3.2 Score=35.08 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=38.0
Q ss_pred CccccchhhHHHHHHHHHHhcCCCCChhhHHhhcCCCCCcHHHHHHhhhhh
Q 005719 213 PRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKF 263 (681)
Q Consensus 213 ~r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~v~glt~~~v~ShLqky 263 (681)
.+-.||+|=+.+|++||+..| .+ =++|.+.| ++-|.++++.|-++|
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G-~~--W~~IA~~v--~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK-DD--WNKVSEHV--GSRTQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS-SC--HHHHHHHH--SSCCHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhC-CC--HHHHHHHc--CCCCHHHHHHHHHHh
Confidence 456799999999999999999 32 36777776 589999999988766
No 126
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=81.27 E-value=14 Score=38.79 Aligned_cols=103 Identities=14% Similarity=0.130 Sum_probs=72.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh---CCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRA---CQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPV 99 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~---~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPV 99 (681)
-+|+.|+|.|+.+.+.|..+|.. ..|+|..+++...+.+.+++. .+|++|+|-.+.... .......+|
T Consensus 21 ~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~~--~~dilli~e~~~~~~-------~~~~~~~~v 91 (373)
T 3fkq_A 21 KIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEY--RIDVLIAEEDFNIDK-------SEFKRNCGL 91 (373)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHHH--TCSEEEEETTCCCCG-------GGGCSSCEE
T ss_pred eEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHhcC--CCCEEEEcchhhhhh-------hhhcccCcE
Confidence 46899999999999999999964 368999999999999998765 489999998775421 122234667
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHH
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVI 140 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vl 140 (681)
++++.....+ ...-...+.|--..+++...+....
T Consensus 92 ~~l~~~~~~~------~~~~~~~i~kyq~~~~i~~ei~~~~ 126 (373)
T 3fkq_A 92 AYFTGTPGIE------LIKDEIAICKYQRVDVIFKQILGVY 126 (373)
T ss_dssp EEEESCTTCC------EETTEEEEETTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCC------cCCCCceeeccCCHHHHHHHHHHHH
Confidence 7776643221 1112246888888888766555443
No 127
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=80.17 E-value=6 Score=32.97 Aligned_cols=48 Identities=13% Similarity=0.139 Sum_probs=36.3
Q ss_pred ccccchhhHHHHHHHHHHhcCCCCChhhHHhhc-CCCCCcHHHHHHhhhhh
Q 005719 214 RVVWTPELHRKFVGAVNQLGVDKAVPKKILDLM-NVEGLTRENVASHLQKF 263 (681)
Q Consensus 214 r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m-~v~glt~~~v~ShLqky 263 (681)
+-.||.+=...|++||..+|.+ .|.+--++- -|||-|..+|+.|.+.+
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~~--~~~rW~~IA~~vpGRT~~qcr~Ry~~L 66 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPRG--SSDCWDKIARCVPSKSKEDCIARYKLL 66 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSS--SHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--CCchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4469999999999999999843 666444432 25799999999975543
No 128
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=79.43 E-value=8 Score=37.47 Aligned_cols=99 Identities=12% Similarity=0.043 Sum_probs=66.4
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCC-CCH-HHHHHHHhc
Q 005719 23 GMRVLAV----DDDPTCLKVLENFLRACQYEVTVTN---QAVTALKMLRENRNNFDLVISDVHMPD-MDG-FKLLEHVGL 93 (681)
Q Consensus 23 GmRVLIV----DDD~~~r~iL~~~Le~~gy~Vt~as---~a~eALe~L~e~~~~pDLVLlDV~MPd-mDG-~elLe~I~~ 93 (681)
.-+||+. |-+..-...+..+|+..||+|.... ...+.++.+++. .+|+|.+-..+.. +.. -++++.++.
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~--~~d~v~lS~~~~~~~~~~~~~i~~l~~ 165 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKY--QPDIVGMSALLTTTMMNMKSTIDALIA 165 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHH--CCSEEEEECCSGGGTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEeccccccHHHHHHHHHHHHh
Confidence 3478888 7788888899999999999999654 356666677654 4999999987754 333 234555643
Q ss_pred c---CCCcEEEEEcCCChHHHHHHHhcCCcEEEeCC
Q 005719 94 E---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126 (681)
Q Consensus 94 ~---~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKP 126 (681)
. +++||++-......+.. .+.||+.|..-.
T Consensus 166 ~~~~~~~~v~vGG~~~~~~~~---~~~gad~~~~da 198 (210)
T 1y80_A 166 AGLRDRVKVIVGGAPLSQDFA---DEIGADGYAPDA 198 (210)
T ss_dssp TTCGGGCEEEEESTTCCHHHH---HHHTCSEECSSH
T ss_pred cCCCCCCeEEEECCCCCHHHH---HHcCCeEEECCH
Confidence 3 34776665544444332 457998775433
No 129
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=78.26 E-value=21 Score=36.91 Aligned_cols=121 Identities=12% Similarity=0.126 Sum_probs=82.7
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH-hccCCCc
Q 005719 20 FPIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHV-GLEMDLP 98 (681)
Q Consensus 20 fP~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I-~~~~dlP 98 (681)
....+-|-++-.++.....+..+|....|.++.+....+.++.++.++..+|.+|+... +..-..+...+ ....-+|
T Consensus 6 ~~~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~~e~iDcLvle~~--~~~~~~~~~~L~~~g~lLP 83 (289)
T 1r8j_A 6 VLSQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAA--NPSFRAVVQQLCFEGVVVP 83 (289)
T ss_dssp CCCCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETT--STTHHHHHHHHHHTTCCCC
T ss_pred cccceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhccccCCEEEEEeC--CCccHHHHHHHHHcCcccc
Confidence 34567888889999999999999987789999999999999999988899999998762 22345566666 4556789
Q ss_pred EEEEEcCCChHHH--H-HHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 99 VIMLSAYGDTKLV--M-KGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 99 VImLSa~~d~e~v--~-kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
+|++......... . +.+.+ ..+.-...-..++|-..+.+++.+.
T Consensus 84 ~vil~~~~~~~~~~~~~~~~yh-~aEv~l~~~ql~~l~~~Id~AI~~F 130 (289)
T 1r8j_A 84 AIVVGDRDSEDPDEPAKEQLYH-SAELHLGIHQLEQLPYQVDAALAEF 130 (289)
T ss_dssp EEEESCCC------CCSSCSSB-TTCEEECTTCGGGHHHHHHHHHHHH
T ss_pred EEEeccCccccCCCCccceecc-HHHHcCCHhHHHHHHHHHHHHHHHH
Confidence 9988654220000 0 11112 2233344445677877777776543
No 130
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=77.78 E-value=17 Score=38.98 Aligned_cols=99 Identities=19% Similarity=0.241 Sum_probs=66.3
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC------------CC
Q 005719 23 GMRVLAVD----DDPTCLKVLENFLRAC-QYEVT--VTNQAVTALKMLRENRNNFDLVISDVHMPD------------MD 83 (681)
Q Consensus 23 GmRVLIVD----DD~~~r~iL~~~Le~~-gy~Vt--~as~a~eALe~L~e~~~~pDLVLlDV~MPd------------mD 83 (681)
|..+++|| +.+...+.++.+-+.+ +..|. .+.+..+|.++.+. ..|.|.+-+. |+ ..
T Consensus 120 Gvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~a---GAD~I~vG~g-pGs~~~tr~~~g~g~p 195 (366)
T 4fo4_A 120 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIG-PGSICTTRIVTGVGVP 195 (366)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSS-CSTTBCHHHHHCCCCC
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHc---CCCEEEEecC-CCCCCCcccccCcccc
Confidence 56677775 3444555565555554 55554 36788888877754 3798888321 11 23
Q ss_pred HHHHHHHHh---ccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 84 GFKLLEHVG---LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 84 G~elLe~I~---~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
.++++..+. ...++|||..-.-.+...+.+++.+||+...+-
T Consensus 196 ~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vG 240 (366)
T 4fo4_A 196 QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 240 (366)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 455555553 245799998888888899999999999988664
No 131
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=77.07 E-value=4.1 Score=32.24 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=37.7
Q ss_pred CCccccchhhHHHHHHHHHHhcCCCCChhhHHhhcCCCCCcHHHHHHhhhhh
Q 005719 212 KPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKF 263 (681)
Q Consensus 212 k~r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~v~glt~~~v~ShLqky 263 (681)
..|-.||+|=.++++++|++.|..+ =++|.+.| +|-|..+++.|-++|
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~--W~~Ia~~~--~~Rt~~qcr~r~~~~ 53 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGN--WQDVANQM--CTKTKEECEKHYMKY 53 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTC--HHHHHHHH--TTSCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCc--HHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3456799999999999999999533 25677776 789999999875554
No 132
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=75.82 E-value=36 Score=39.97 Aligned_cols=117 Identities=12% Similarity=0.046 Sum_probs=77.1
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCC-CCH-HHHHHHHhcc
Q 005719 24 MRVLAV----DDDPTCLKVLENFLRACQYEVTVTN---QAVTALKMLRENRNNFDLVISDVHMPD-MDG-FKLLEHVGLE 94 (681)
Q Consensus 24 mRVLIV----DDD~~~r~iL~~~Le~~gy~Vt~as---~a~eALe~L~e~~~~pDLVLlDV~MPd-mDG-~elLe~I~~~ 94 (681)
.||+|. |.+..-..++..+|+..||+|.... ...+.++.+.+. .+|+|.+...|.. +.. -++++.|+..
T Consensus 605 ~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~--~adiVglSsl~~~~~~~~~~vi~~Lr~~ 682 (762)
T 2xij_A 605 PRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDA--DVHAVGVSTLAAGHKTLVPELIKELNSL 682 (762)
T ss_dssp CEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHT--TCSEEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHc--CCCEEEEeeecHHHHHHHHHHHHHHHhc
Confidence 577776 5666667778889999999998643 567778877764 4899999877653 222 3455555432
Q ss_pred -C-CCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 95 -M-DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 95 -~-dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
. ++ +|++.+.........+.+.||+.|+..--+..++...+...+..+
T Consensus 683 G~~dv-~VivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l~~~ 732 (762)
T 2xij_A 683 GRPDI-LVMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEKC 732 (762)
T ss_dssp TCTTS-EEEEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCC-EEEEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHHHHH
Confidence 2 33 344444223333445678999999986667777777777766543
No 133
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=75.13 E-value=7.4 Score=38.34 Aligned_cols=54 Identities=11% Similarity=0.257 Sum_probs=39.7
Q ss_pred HHHHHHHhccCCCcEEEEEcCCC------hHHHHHHHhcCCcEEEeCCCChHHHHHHHHH
Q 005719 85 FKLLEHVGLEMDLPVIMLSAYGD------TKLVMKGITHGACDYLLKPVRIEELKNIWQH 138 (681)
Q Consensus 85 ~elLe~I~~~~dlPVImLSa~~d------~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~ 138 (681)
+++++.++...++||++++.... .+.+..+++.||+.+++-....++....++.
T Consensus 69 ~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~ 128 (248)
T 1geq_A 69 FWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEI 128 (248)
T ss_dssp HHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHH
T ss_pred HHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHHH
Confidence 67778887667889998874333 4678889999999999876666665554443
No 134
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=74.42 E-value=32 Score=40.22 Aligned_cols=115 Identities=15% Similarity=0.076 Sum_probs=75.4
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCC-CC-HHHHHHHHhcc
Q 005719 24 MRVLAV----DDDPTCLKVLENFLRACQYEVTVTN---QAVTALKMLRENRNNFDLVISDVHMPD-MD-GFKLLEHVGLE 94 (681)
Q Consensus 24 mRVLIV----DDD~~~r~iL~~~Le~~gy~Vt~as---~a~eALe~L~e~~~~pDLVLlDV~MPd-mD-G~elLe~I~~~ 94 (681)
.||+|. |.+..-...+..+|+..||+|.... ...+.++.+.+. .+|+|.+...|.. +. .-++++.|+..
T Consensus 597 ~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~--~adiVglSsl~~~~~~~~~~vi~~L~~~ 674 (727)
T 1req_A 597 PRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEA--DVHVVGVSSLAGGHLTLVPALRKELDKL 674 (727)
T ss_dssp CEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHT--TCSEEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHc--CCCEEEEeeecHhHHHHHHHHHHHHHhc
Confidence 577777 6666667778888999999998643 467788877765 4899999887653 22 23455556432
Q ss_pred -C-CCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 95 -M-DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 95 -~-dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
. ++ .|++.+..-......+.+.||+.|+..-....++...+...++
T Consensus 675 G~~~i-~VivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~ 722 (727)
T 1req_A 675 GRPDI-LITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLR 722 (727)
T ss_dssp TCTTS-EEEEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CCCCC-EEEEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHHH
Confidence 2 33 4445543333334556789999999866677776666655554
No 135
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=74.34 E-value=5.1 Score=32.39 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=41.8
Q ss_pred CCCccccchhhHHHHHHHHHHhcCCCCChhhHHhhcCCCCCcHHHHHHhhhhhHhhhc
Q 005719 211 KKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFRLYLK 268 (681)
Q Consensus 211 kk~r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~v~glt~~~v~ShLqkyr~~l~ 268 (681)
...|-.||+|=-++.+++|++.|..+ =+.|.+.+...|-|-.+++- +||.++|
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~--W~~Ia~~~~~~~Rt~~qcr~---Rw~nl~k 60 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGN--WAAISKNYPFVNRTAVMIKD---RWRTMKR 60 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTC--HHHHHHHSCCSSCCHHHHHH---HHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCc--hHHHHhhcCCCCCCHHHHHH---HHHHHhc
Confidence 34566799999999999999999533 35788888888999988876 7777776
No 136
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=74.20 E-value=17 Score=39.48 Aligned_cols=100 Identities=12% Similarity=0.209 Sum_probs=65.3
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCC-------C----CCCCHH
Q 005719 23 GMRVLAVDD----DPTCLKVLENFLRACQYEVT--VTNQAVTALKMLRENRNNFDLVISDVH-------M----PDMDGF 85 (681)
Q Consensus 23 GmRVLIVDD----D~~~r~iL~~~Le~~gy~Vt--~as~a~eALe~L~e~~~~pDLVLlDV~-------M----PdmDG~ 85 (681)
|..++++|- .....+.++.+-+.++..|. .+.+..+|..+++. ..|.|++-.. . .+...+
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~a---GAD~I~vG~g~Gs~~~tr~~~g~g~p~~ 232 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQI 232 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHT---TCSEEEECC---------CCSCBCCCHH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHc---CCCEEEEeCCCCcCcccccccccchhHH
Confidence 556777752 33344555554444466665 47788888777653 4899888321 0 012345
Q ss_pred HHHHHHh---ccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 86 KLLEHVG---LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 86 elLe~I~---~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
.++..+. ...++|||.-..-.+...+.+++.+||+...+-
T Consensus 233 ~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~vG 275 (400)
T 3ffs_A 233 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 275 (400)
T ss_dssp HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 6666653 235799998888888999999999999988764
No 137
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=73.37 E-value=9.1 Score=37.74 Aligned_cols=99 Identities=13% Similarity=0.084 Sum_probs=66.1
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEE--eCCCCC-CCH-HHHHHH
Q 005719 22 IGMRVLAV----DDDPTCLKVLENFLRACQYEVTVTN---QAVTALKMLRENRNNFDLVIS--DVHMPD-MDG-FKLLEH 90 (681)
Q Consensus 22 ~GmRVLIV----DDD~~~r~iL~~~Le~~gy~Vt~as---~a~eALe~L~e~~~~pDLVLl--DV~MPd-mDG-~elLe~ 90 (681)
..-||++. |-+..-...+..+|+..||+|+... ...+.++.+.+.+ +|+|.+ ...|.. +.. -++++.
T Consensus 91 ~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~--~d~v~l~~S~l~~~~~~~~~~~i~~ 168 (215)
T 3ezx_A 91 EAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHK--GEKVLLVGSALMTTSMLGQKDLMDR 168 (215)
T ss_dssp -CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTT--TSCEEEEEECSSHHHHTHHHHHHHH
T ss_pred CCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcC--CCEEEEEchhcccCcHHHHHHHHHH
Confidence 34578887 7778888889999999999998654 4566777777654 899999 877642 333 235555
Q ss_pred Hhcc-C--CCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 91 VGLE-M--DLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 91 I~~~-~--dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
++.. . ++||++=.+.-..+. +-+.||+.|-.-
T Consensus 169 l~~~~~~~~v~v~vGG~~~~~~~---a~~iGad~~~~d 203 (215)
T 3ezx_A 169 LNEEKLRDSVKCMFGGAPVSDKW---IEEIGADATAEN 203 (215)
T ss_dssp HHHTTCGGGSEEEEESSSCCHHH---HHHHTCCBCCSS
T ss_pred HHHcCCCCCCEEEEECCCCCHHH---HHHhCCeEEECC
Confidence 6433 2 577765554445443 345699888543
No 138
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=73.24 E-value=6.3 Score=40.69 Aligned_cols=94 Identities=16% Similarity=0.133 Sum_probs=61.1
Q ss_pred HHhCCCeEE-EE-CCHHHHHHHHHhcCCCceEEEEeCCCCCCCH-----HHHHHHHhc-cCC-CcEEEEEcCCChHHHHH
Q 005719 43 LRACQYEVT-VT-NQAVTALKMLRENRNNFDLVISDVHMPDMDG-----FKLLEHVGL-EMD-LPVIMLSAYGDTKLVMK 113 (681)
Q Consensus 43 Le~~gy~Vt-~a-s~a~eALe~L~e~~~~pDLVLlDV~MPdmDG-----~elLe~I~~-~~d-lPVImLSa~~d~e~v~k 113 (681)
|.+.||.|. .+ .+...|.++.. - .+++| +.+-.|-..| .++++.+.. ..+ +|||+=..-...+.+..
T Consensus 120 L~k~Gf~Vlpy~~~D~~~ak~l~~-~--G~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~ 195 (268)
T 2htm_A 120 LIEEDFLVLPYMGPDLVLAKRLAA-L--GTATV-MPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAE 195 (268)
T ss_dssp HHHTTCEECCEECSCHHHHHHHHH-H--TCSCB-EEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHHH
T ss_pred HHHCCCEEeeccCCCHHHHHHHHh-c--CCCEE-EecCccCcCCcccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHH
Confidence 344599877 34 45544444333 2 35666 6655543333 456787765 677 99998777789999999
Q ss_pred HHhcCCcEEEe-----CCCChHHHHHHHHHHH
Q 005719 114 GITHGACDYLL-----KPVRIEELKNIWQHVI 140 (681)
Q Consensus 114 Al~~GA~DYLl-----KPvs~eEL~~i~q~Vl 140 (681)
++++||+..++ |--++..+...+...+
T Consensus 196 AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av 227 (268)
T 2htm_A 196 VMELGLDAVLVNTAIAEAQDPPAMAEAFRLAV 227 (268)
T ss_dssp HHHTTCCEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEChHHhCCCCHHHHHHHHHHHH
Confidence 99999999875 4344555555555544
No 139
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=72.13 E-value=26 Score=32.01 Aligned_cols=106 Identities=18% Similarity=0.113 Sum_probs=71.0
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHHhCCCeEEE-ECC--HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 005719 23 GMRVLAVDDDP-TCLKVLENFLRACQYEVTV-TNQ--AVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLP 98 (681)
Q Consensus 23 GmRVLIVDDD~-~~r~iL~~~Le~~gy~Vt~-as~--a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlP 98 (681)
.++++|+.+.+ .....++++++..+ .|.. ... ..+..+.+. ..|++|+-... +.-|..+++.+. ..+|
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~----~ad~~l~ps~~-e~~~~~~~Ea~a--~G~P 141 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYG----SVDFVIIPSYF-EPFGLVALEAMC--LGAI 141 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHT----TCSEEEECCSC-CSSCHHHHHHHH--TTCE
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHH----HCCEEEECCCC-CCccHHHHHHHH--CCCC
Confidence 47888887644 35667788887777 6666 443 335455553 36888874433 444677777764 4678
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
||+. . .....+.+ .|...++..|-+.++|...+..++.
T Consensus 142 vI~~-~---~~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 142 PIAS-A---VGGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp EEEE-S---CHHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred EEEe-C---CCChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 7754 2 23344455 7788999999999999999988875
No 140
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=71.39 E-value=42 Score=34.30 Aligned_cols=98 Identities=10% Similarity=-0.027 Sum_probs=63.8
Q ss_pred EEEEEe--CCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHhcc-C-CC
Q 005719 25 RVLAVD--DDPTCLKVLENFLRACQYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPD--MDGFKLLEHVGLE-M-DL 97 (681)
Q Consensus 25 RVLIVD--DD~~~r~iL~~~Le~~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPd--mDG~elLe~I~~~-~-dl 97 (681)
.|+|+. -+......+.+..+..|..+. .+.+..++...+.. .+|+|-+.-.-.. .-+++.++.+... + ++
T Consensus 138 ~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~---Gad~IGv~~r~l~~~~~dl~~~~~l~~~v~~~~ 214 (272)
T 3qja_A 138 MLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKA---GAKVIGVNARDLMTLDVDRDCFARIAPGLPSSV 214 (272)
T ss_dssp EEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---TCSEEEEESBCTTTCCBCTTHHHHHGGGSCTTS
T ss_pred EEEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHC---CCCEEEECCCcccccccCHHHHHHHHHhCcccC
Confidence 355542 233344555566667787654 56777776666543 3788877632111 1134556666432 3 78
Q ss_pred cEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 98 PVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 98 PVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
|||..++-...+.+.+....||+.+++-
T Consensus 215 pvVaegGI~t~edv~~l~~~GadgvlVG 242 (272)
T 3qja_A 215 IRIAESGVRGTADLLAYAGAGADAVLVG 242 (272)
T ss_dssp EEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 9999888888999999999999999875
No 141
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=70.93 E-value=27 Score=35.73 Aligned_cols=114 Identities=10% Similarity=0.049 Sum_probs=73.3
Q ss_pred CcEEEEE----eCCHHHHHHHHHH--------HHhC-CCeEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCCCC-HH
Q 005719 23 GMRVLAV----DDDPTCLKVLENF--------LRAC-QYEVTVTN---QAVTALKMLRENRNNFDLVISDVHMPDMD-GF 85 (681)
Q Consensus 23 GmRVLIV----DDD~~~r~iL~~~--------Le~~-gy~Vt~as---~a~eALe~L~e~~~~pDLVLlDV~MPdmD-G~ 85 (681)
..||++. |-+..-...+..+ |+.. ||+|+-.. ...+.++.+.+. .+|+|.+...|...+ ..
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~--~~d~VglS~l~t~~~~~~ 197 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVEL--EADVLLVSQTVTQKNVHI 197 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHT--TCSEEEEECCCCTTSHHH
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHc--CCCEEEEEeecCCccchH
Confidence 4567665 6677777777777 9999 99998543 567777777765 499999999887522 22
Q ss_pred ----HHHHHHhcc---CCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 86 ----KLLEHVGLE---MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 86 ----elLe~I~~~---~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
++++.++.. .+++||+=-+..+. ..+.+.||+.|..--....++...+...++
T Consensus 198 ~~~~~~i~~L~~~g~~~~i~vivGG~~~~~---~~a~~iGad~~~~da~~~~~~a~~l~~~~~ 257 (262)
T 1xrs_B 198 QNMTHLIELLEAEGLRDRFVLLCGGPRINN---EIAKELGYDAGFGPGRFADDVATFAVKTLN 257 (262)
T ss_dssp HHHHHHHHHHHHTTCGGGSEEEEECTTCCH---HHHHTTTCSEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCcCCH---HHHHHcCCeEEECCchHHHHHHHHHHHHHH
Confidence 244455432 12555433333333 236678999988777777776665554443
No 142
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=67.44 E-value=35 Score=32.28 Aligned_cols=69 Identities=13% Similarity=0.182 Sum_probs=48.9
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 52 VTNQAVTALKMLRENRNNFDLVISDVHMPD-------MDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 52 ~as~a~eALe~L~e~~~~pDLVLlDV~MPd-------mDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
.+.+..++.+.... .+|.|+++...|. ..+++.++.+....++||++..+-. .+.+.++++.||+.+..
T Consensus 114 ~~~t~~e~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 189 (215)
T 1xi3_A 114 SVYSLEEALEAEKK---GADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLKTGVDGIAV 189 (215)
T ss_dssp EESSHHHHHHHHHH---TCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHTTTCSEEEE
T ss_pred ecCCHHHHHHHHhc---CCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHHHcCCCEEEE
Confidence 35677776655432 4899998754443 3478888888655588998876665 77788888999998854
No 143
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=67.34 E-value=25 Score=37.36 Aligned_cols=100 Identities=12% Similarity=0.207 Sum_probs=63.7
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCC-----------CCCCHH
Q 005719 23 GMRVLAVD----DDPTCLKVLENFLRACQYEVT--VTNQAVTALKMLRENRNNFDLVISDVHM-----------PDMDGF 85 (681)
Q Consensus 23 GmRVLIVD----DD~~~r~iL~~~Le~~gy~Vt--~as~a~eALe~L~e~~~~pDLVLlDV~M-----------PdmDG~ 85 (681)
|..+++|+ +.....+.++.+-+.++..|. .+.+..+|..++.. ..|.|.+-+.- .+...+
T Consensus 117 Gad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~a---GaD~I~VG~~~Gs~~~tr~~~g~g~p~~ 193 (361)
T 3khj_A 117 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQI 193 (361)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHT---TCSEEEECSSCCTTCCHHHHTCBCCCHH
T ss_pred CcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHc---CcCEEEEecCCCcCCCcccccCCCCCcH
Confidence 44566664 233445566665555566665 46677777776652 47888873210 012345
Q ss_pred HHHHHHh---ccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 86 KLLEHVG---LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 86 elLe~I~---~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
+++..+. ...++|||.-..-.+...+.+++..||+...+-
T Consensus 194 ~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vG 236 (361)
T 3khj_A 194 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 236 (361)
T ss_dssp HHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 5555542 234799998888788899999999999988654
No 144
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=66.55 E-value=13 Score=30.06 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=44.3
Q ss_pred cCCCCccccchhhHHHHHHHHHHhcCCCCChhhHHhhcCCCCCcHHHHHHhhhhhHhhhcc
Q 005719 209 TQKKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFRLYLKR 269 (681)
Q Consensus 209 ~~kk~r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~v~glt~~~v~ShLqkyr~~l~~ 269 (681)
..+++|-.||+|=-...+++|++.|..+ =+.|.+.|+..|-|-.+++- +|+.+|+.
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~--W~~Ia~~~~~~~Rt~~qcr~---Rw~~~l~p 60 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGN--WSKILLHYKFNNRTSVMLKD---RWRTMKKL 60 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSC--HHHHHHHSCCSSCCHHHHHH---HHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCc--HHHHHHHcCcCCCCHHHHHH---HHHHHcCC
Confidence 3567788899999999999999999532 36788888655889888887 67777764
No 145
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=66.31 E-value=14 Score=37.43 Aligned_cols=71 Identities=21% Similarity=0.229 Sum_probs=50.1
Q ss_pred CceEEEEeCCC--CCCCH--------------------HHHHHHHhcc-CCCcEEEEEcCC------ChHHHHHHHhcCC
Q 005719 69 NFDLVISDVHM--PDMDG--------------------FKLLEHVGLE-MDLPVIMLSAYG------DTKLVMKGITHGA 119 (681)
Q Consensus 69 ~pDLVLlDV~M--PdmDG--------------------~elLe~I~~~-~dlPVImLSa~~------d~e~v~kAl~~GA 119 (681)
..|+|-+++-. |-+|| +++++.++.. .++||++|+... -...+..+.+.||
T Consensus 44 GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGa 123 (268)
T 1qop_A 44 GADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGV 123 (268)
T ss_dssp TCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTC
T ss_pred CCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCC
Confidence 47888888733 22343 4556777666 689999886332 1467788999999
Q ss_pred cEEEeCCCChHHHHHHHHHH
Q 005719 120 CDYLLKPVRIEELKNIWQHV 139 (681)
Q Consensus 120 ~DYLlKPvs~eEL~~i~q~V 139 (681)
+.++.-.+..+++...++.+
T Consensus 124 dgii~~d~~~e~~~~~~~~~ 143 (268)
T 1qop_A 124 DSVLVADVPVEESAPFRQAA 143 (268)
T ss_dssp CEEEETTCCGGGCHHHHHHH
T ss_pred CEEEEcCCCHHHHHHHHHHH
Confidence 99999888887776666554
No 146
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=65.53 E-value=30 Score=40.05 Aligned_cols=115 Identities=10% Similarity=0.089 Sum_probs=73.1
Q ss_pred CcEEEEE----eCCHHHHHHH----HHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCC----CCHHH-
Q 005719 23 GMRVLAV----DDDPTCLKVL----ENFLRACQYEVTVTN---QAVTALKMLRENRNNFDLVISDVHMPD----MDGFK- 86 (681)
Q Consensus 23 GmRVLIV----DDD~~~r~iL----~~~Le~~gy~Vt~as---~a~eALe~L~e~~~~pDLVLlDV~MPd----mDG~e- 86 (681)
..|||+. |-+..-...+ ..+|+..||+|+-.. ...+.++.+.+. .+|+|.+...|.. +..+.
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~Ee--dADVVGLSsLLTt~dihL~~Mke 679 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIEL--KADAILASTIISHDDIHYKNMKR 679 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHHT--TCSEEEEECCCCGGGHHHHHHHH
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEeccccCchhhHHHHHH
Confidence 3578887 4454444333 568888999998544 577888888765 4999999988876 33332
Q ss_pred HHHHHhcc-C--CCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 87 LLEHVGLE-M--DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 87 lLe~I~~~-~--dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
+++.++.. . .++||+=.+.-..+. +.+.||+.|........++...|...++.
T Consensus 680 vIelLrE~GlrDkIkVIVGGa~~tqd~---AkeIGADa~f~DATeAVeVA~~Ll~~l~e 735 (763)
T 3kp1_A 680 IHELAVEKGIRDKIMIGCGGTQVTPEV---AVKQGVDAGFGRGSKGIHVATFLVKKRRE 735 (763)
T ss_dssp HHHHHHHTTCTTTSEEEEECTTCCHHH---HHTTTCSEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHH---HHHcCCcEEECCcchHHHHHHHHHHHHHH
Confidence 44555432 2 245544333333332 45899999988777777776666555543
No 147
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=65.21 E-value=17 Score=36.61 Aligned_cols=55 Identities=18% Similarity=0.357 Sum_probs=39.6
Q ss_pred HHHHHHHhccC-CCcEEEEEcCCC------hHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 005719 85 FKLLEHVGLEM-DLPVIMLSAYGD------TKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139 (681)
Q Consensus 85 ~elLe~I~~~~-dlPVImLSa~~d------~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~V 139 (681)
+++++.++... ++|+++|+.... ...+..+.+.||+.++.-.+..+++...+..+
T Consensus 82 ~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~ 143 (262)
T 2ekc_A 82 LELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVM 143 (262)
T ss_dssp HHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 45566776555 899999854321 35667788999999999888888876665554
No 148
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=65.02 E-value=21 Score=36.33 Aligned_cols=107 Identities=12% Similarity=0.110 Sum_probs=64.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECC--HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQ--AVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVI 100 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~--a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVI 100 (681)
.++++|+.+.+. ..+++++++..-.|..... ..+..+.+.. .|++|+--.-.+.-|..+++.+. ..+|||
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~~e~~~~~~~Ea~a--~G~PvI 311 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMRS----ADVYCAPHLGGESFGIVLVEAMA--AGTAVV 311 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHHH----SSEEEECCCSCCSSCHHHHHHHH--HTCEEE
T ss_pred CeEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHHH----CCEEEecCCCCCCCchHHHHHHH--cCCCEE
Confidence 356666665554 4444444433223443332 2333444442 57777643213344667777764 357877
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
+.. .....+.+..|...++..|-+.++|.+.+..++.
T Consensus 312 ~~~----~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 348 (406)
T 2gek_A 312 ASD----LDAFRRVLADGDAGRLVPVDDADGMAAALIGILE 348 (406)
T ss_dssp ECC----CHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHH
T ss_pred Eec----CCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHc
Confidence 532 2455667778888999999999999999988864
No 149
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=64.61 E-value=76 Score=32.65 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=56.8
Q ss_pred HHHHhCCCeEEE-ECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCcEEEEEcCCChHHHH
Q 005719 41 NFLRACQYEVTV-TNQAVTALKMLRENRNNFDLVISDVHMPD-------MDGFKLLEHVGLEMDLPVIMLSAYGDTKLVM 112 (681)
Q Consensus 41 ~~Le~~gy~Vt~-as~a~eALe~L~e~~~~pDLVLlDV~MPd-------mDG~elLe~I~~~~dlPVImLSa~~d~e~v~ 112 (681)
+.+++.+..|.. +.+..++..... ...|.|+++-.-++ ...+++++.+....++|||+-..-.+.+.+.
T Consensus 112 ~~l~~~gi~vi~~v~t~~~a~~~~~---~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~ 188 (328)
T 2gjl_A 112 AEFRRHGVKVIHKCTAVRHALKAER---LGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLV 188 (328)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHH---TTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHH
T ss_pred HHHHHcCCCEEeeCCCHHHHHHHHH---cCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHH
Confidence 344444655543 566777766554 24788888532221 2567888888766789999888887888999
Q ss_pred HHHhcCCcEEEeC
Q 005719 113 KGITHGACDYLLK 125 (681)
Q Consensus 113 kAl~~GA~DYLlK 125 (681)
+++..||+.+.+-
T Consensus 189 ~al~~GAdgV~vG 201 (328)
T 2gjl_A 189 AALALGADAINMG 201 (328)
T ss_dssp HHHHHTCSEEEES
T ss_pred HHHHcCCCEEEEC
Confidence 9999999987653
No 150
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=64.37 E-value=8.6 Score=38.85 Aligned_cols=50 Identities=24% Similarity=0.303 Sum_probs=42.0
Q ss_pred CCccccchhhHHHHHHHHHHhcCCCCChhhHHhhcCCCCCcHHHHHHhhhhhHhh
Q 005719 212 KPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFRLY 266 (681)
Q Consensus 212 k~r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~v~glt~~~v~ShLqkyr~~ 266 (681)
+..-.||+|=+..|++|+...|-+ =.+|-+. |++=|..+|++|.++||..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGKD---W~~IAk~--VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGRD---FQAISDV--IGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSC---HHHHHHH--HSSCCHHHHHHHHHHTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcC---HHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 456689999999999999999954 4567666 6899999999999988864
No 151
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=63.88 E-value=90 Score=33.31 Aligned_cols=98 Identities=10% Similarity=0.080 Sum_probs=60.9
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHHhC-CCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCCC------------CC
Q 005719 23 GMRVLAVDD----DPTCLKVLENFLRAC-QYEVTV--TNQAVTALKMLRENRNNFDLVISDVHMPD------------MD 83 (681)
Q Consensus 23 GmRVLIVDD----D~~~r~iL~~~Le~~-gy~Vt~--as~a~eALe~L~e~~~~pDLVLlDV~MPd------------mD 83 (681)
|..++.||- .....+.++.+-+.+ +..|.. +.+..+|..+... ..|.|.+.++ |+ ..
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~a---GaD~I~Vg~g-~G~~~~tr~~~g~g~p 187 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASC---GADIIKAGIG-GGSVCSTRIKTGFGVP 187 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHT---TCSEEEECCS-SSSCHHHHHHHCCCCC
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHc---CCCEEEEcCC-CCcCccccccCCccHH
Confidence 556777762 223333443333332 555554 6788888777653 4899988644 22 12
Q ss_pred HHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 84 GFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 84 G~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
.++.+..+..... |||.-..-.+...+.+++..||+...+-
T Consensus 188 ~l~aI~~~~~~~~-PVIAdGGI~~~~di~kALa~GAd~V~iG 228 (361)
T 3r2g_A 188 MLTCIQDCSRADR-SIVADGGIKTSGDIVKALAFGADFVMIG 228 (361)
T ss_dssp HHHHHHHHTTSSS-EEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHhCC-CEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 3444444432222 9998888888999999999999887654
No 152
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=63.47 E-value=6.8 Score=34.41 Aligned_cols=77 Identities=17% Similarity=0.290 Sum_probs=48.0
Q ss_pred CCCcEEEEE-----eCCHHHHHHHHHHHHhCCCeEEE-ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc
Q 005719 21 PIGMRVLAV-----DDDPTCLKVLENFLRACQYEVTV-TNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE 94 (681)
Q Consensus 21 P~GmRVLIV-----DDD~~~r~iL~~~Le~~gy~Vt~-as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~ 94 (681)
|+.||||+| --. .....+++.+...|+++.+ +....++...+ ..+|+||+-.++... ++-++.....
T Consensus 2 ~~~mkIlvvC~~G~~TS-ll~~kl~~~~~~~gi~~~i~~~~~~~~~~~~----~~~D~Ii~t~~l~~~--~~~~~~~~~~ 74 (109)
T 2l2q_A 2 PGSMNILLVCGAGMSTS-MLVQRIEKYAKSKNINATIEAIAETRLSEVV----DRFDVVLLAPQSRFN--KKRLEEITKP 74 (109)
T ss_dssp CCCEEEEEESSSSCSSC-HHHHHHHHHHHHHTCSEEEEEECSTTHHHHT----TTCSEEEECSCCSSH--HHHHHHHHHH
T ss_pred CCceEEEEECCChHhHH-HHHHHHHHHHHHCCCCeEEEEecHHHHHhhc----CCCCEEEECCccHHH--HHHHHHHhcc
Confidence 566888887 234 7777888889887875432 22333333322 358999998877653 4434333223
Q ss_pred CCCcEEEEEc
Q 005719 95 MDLPVIMLSA 104 (681)
Q Consensus 95 ~dlPVImLSa 104 (681)
.++||+++..
T Consensus 75 ~~~pv~~I~~ 84 (109)
T 2l2q_A 75 KGIPIEIINT 84 (109)
T ss_dssp HTCCEEECCH
T ss_pred cCCCEEEECh
Confidence 5789988865
No 153
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=63.17 E-value=61 Score=30.75 Aligned_cols=100 Identities=10% Similarity=0.046 Sum_probs=58.7
Q ss_pred CcEEEEEeCCH--HHHHHHHHHHHhCCCeEEEE----CCHHHHHHHHHhcCCCceEEEEeCCCC----CCCHHHHHHHHh
Q 005719 23 GMRVLAVDDDP--TCLKVLENFLRACQYEVTVT----NQAVTALKMLRENRNNFDLVISDVHMP----DMDGFKLLEHVG 92 (681)
Q Consensus 23 GmRVLIVDDD~--~~r~iL~~~Le~~gy~Vt~a----s~a~eALe~L~e~~~~pDLVLlDV~MP----dmDG~elLe~I~ 92 (681)
|...+++.+.+ .....+.+.+++.|..+.+. .+..+.++.+.+. ..|+|.++.... ...+++.++.++
T Consensus 77 Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~--g~d~i~v~~g~~g~~~~~~~~~~i~~l~ 154 (211)
T 3f4w_A 77 GADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEA--GADMLAVHTGTDQQAAGRKPIDDLITML 154 (211)
T ss_dssp TCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHH--TCCEEEEECCHHHHHTTCCSHHHHHHHH
T ss_pred CCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHc--CCCEEEEcCCCcccccCCCCHHHHHHHH
Confidence 33444454443 33455666666667766542 3443433443332 368877763110 113567777776
Q ss_pred cc-CCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 93 LE-MDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 93 ~~-~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
.. .++||++-.+-. .+.+.++++.||+.++.-
T Consensus 155 ~~~~~~~i~~~gGI~-~~~~~~~~~~Gad~vvvG 187 (211)
T 3f4w_A 155 KVRRKARIAVAGGIS-SQTVKDYALLGPDVVIVG 187 (211)
T ss_dssp HHCSSCEEEEESSCC-TTTHHHHHTTCCSEEEEC
T ss_pred HHcCCCcEEEECCCC-HHHHHHHHHcCCCEEEEC
Confidence 54 478888766554 778888999999987653
No 154
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=62.83 E-value=54 Score=28.83 Aligned_cols=42 Identities=10% Similarity=0.277 Sum_probs=34.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHh
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRE 65 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e 65 (681)
+-|++...|...+...+.++++.||.|.++.+..+.-+.+.+
T Consensus 3 ivivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsiee 44 (134)
T 2l69_A 3 IVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEE 44 (134)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH
T ss_pred EEEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHH
Confidence 445666788888899999999999999999999887666654
No 155
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=62.61 E-value=28 Score=33.62 Aligned_cols=69 Identities=16% Similarity=0.209 Sum_probs=49.2
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 52 VTNQAVTALKMLRENRNNFDLVISDVHMPD-------MDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 52 ~as~a~eALe~L~e~~~~pDLVLlDV~MPd-------mDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
.+.+..++.+... ...|.|+++...+. .-+++.++.+....++|||+..+- +.+.+.++++.||+.+..
T Consensus 116 sv~t~~~~~~a~~---~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia~GGI-~~~nv~~~~~~Ga~gv~v 191 (221)
T 1yad_A 116 SVHSLEEAVQAEK---EDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGM-TPDRLRDVKQAGADGIAV 191 (221)
T ss_dssp EECSHHHHHHHHH---TTCSEEEEECCC----------CHHHHHHHHHHHCCSCEEEESSC-CGGGHHHHHHTTCSEEEE
T ss_pred EcCCHHHHHHHHh---CCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 4567777766654 24899999764332 236778888755558999988777 788889999999998754
No 156
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=62.52 E-value=31 Score=30.72 Aligned_cols=93 Identities=11% Similarity=0.135 Sum_probs=44.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECC-HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQ-AVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPVI 100 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~-a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPVI 100 (681)
|.+|.++|.++...+.++ ..|+.+....- -.+.|+.+. -...|+||+-+.-.. .-..++..++ ..+.++||
T Consensus 30 g~~v~vid~~~~~~~~~~----~~g~~~i~gd~~~~~~l~~a~--i~~ad~vi~~~~~~~-~n~~~~~~a~~~~~~~~ii 102 (140)
T 3fwz_A 30 DIPLVVIETSRTRVDELR----ERGVRAVLGNAANEEIMQLAH--LECAKWLILTIPNGY-EAGEIVASARAKNPDIEII 102 (140)
T ss_dssp TCCEEEEESCHHHHHHHH----HTTCEEEESCTTSHHHHHHTT--GGGCSEEEECCSCHH-HHHHHHHHHHHHCSSSEEE
T ss_pred CCCEEEEECCHHHHHHHH----HcCCCEEECCCCCHHHHHhcC--cccCCEEEEECCChH-HHHHHHHHHHHHCCCCeEE
Confidence 456666666665443332 23554432221 122232221 123677776442211 1122333333 34567777
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEe
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
+.... .+......+.||+..+.
T Consensus 103 ar~~~--~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 103 ARAHY--DDEVAYITERGANQVVM 124 (140)
T ss_dssp EEESS--HHHHHHHHHTTCSEEEE
T ss_pred EEECC--HHHHHHHHHCCCCEEEC
Confidence 66543 45556666788876653
No 157
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=62.15 E-value=97 Score=29.79 Aligned_cols=119 Identities=12% Similarity=0.153 Sum_probs=70.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEE-ECCHHHHHHHHHhcCCCceEEEEe----------CCCC----CCCHH
Q 005719 21 PIGMRVLAVDDDPTCLKVLENFLRACQYEVTV-TNQAVTALKMLRENRNNFDLVISD----------VHMP----DMDGF 85 (681)
Q Consensus 21 P~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~-as~a~eALe~L~e~~~~pDLVLlD----------V~MP----dmDG~ 85 (681)
+...+|+++-..+..+..+++++...+.++.+ ..+..++++..++....+|+||.- +..| ..+|+
T Consensus 2 ~~~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIISRGgta~~lr~~~~iPVV~I~~s~~ 81 (196)
T 2q5c_A 2 SLSLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIISRGATSDYIKKSVSIPSISIKVTRF 81 (196)
T ss_dssp CCCCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEEEHHHHHHHHTTCSSCEEEECCCHH
T ss_pred CCCCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEECChHHHHHHHhCCCCEEEEcCCHh
Confidence 34568999999999999999988876667654 457788888776533468888852 1233 35677
Q ss_pred HHHHHHhc--cCCCcEEEEEcCC---ChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 86 KLLEHVGL--EMDLPVIMLSAYG---DTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 86 elLe~I~~--~~dlPVImLSa~~---d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
++++.|.. ...-+|-+++-.. ....+...+.... ......+.+|+...++.+.+
T Consensus 82 Dil~al~~a~~~~~kIavvg~~~~~~~~~~~~~ll~~~i--~~~~~~~~~e~~~~i~~l~~ 140 (196)
T 2q5c_A 82 DTMRAVYNAKRFGNELALIAYKHSIVDKHEIEAMLGVKI--KEFLFSSEDEITTLISKVKT 140 (196)
T ss_dssp HHHHHHHHHGGGCSEEEEEEESSCSSCHHHHHHHHTCEE--EEEEECSGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCcEEEEeCcchhhHHHHHHHHhCCce--EEEEeCCHHHHHHHHHHHHH
Confidence 77776631 2223444444332 2233333333322 22223445677776666543
No 158
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=62.14 E-value=11 Score=34.99 Aligned_cols=53 Identities=25% Similarity=0.444 Sum_probs=32.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh--CCCeEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRA--CQYEVTVTNQAVTALKMLRENRNNFDLVISDV 77 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~--~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV 77 (681)
.|.||++||-|+.. .+..++.. .++.+..+.. ....+.+...+..||+||+|.
T Consensus 29 ~g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~yD~viiD~ 83 (206)
T 4dzz_A 29 SGYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAAS-EKDVYGIRKDLADYDFAIVDG 83 (206)
T ss_dssp TTCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCS-HHHHHTHHHHTTTSSEEEEEC
T ss_pred CCCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCc-HHHHHHHHHhcCCCCEEEEEC
Confidence 46899999988643 34444433 2455655544 333334444345699999997
No 159
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=61.72 E-value=55 Score=34.56 Aligned_cols=101 Identities=10% Similarity=0.099 Sum_probs=63.9
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC------------CC
Q 005719 23 GMRVLAVD----DDPTCLKVLENFLRAC-QYEVT--VTNQAVTALKMLRENRNNFDLVISDVHMPD------------MD 83 (681)
Q Consensus 23 GmRVLIVD----DD~~~r~iL~~~Le~~-gy~Vt--~as~a~eALe~L~e~~~~pDLVLlDV~MPd------------mD 83 (681)
|..++.++ +.....+.++.+-+.. +..|. .+.+..+|..+... ..|.|.+... ++ ..
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~a---GaD~I~v~~g-~G~~~~~r~~~g~~~p 207 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILS---GADIIKVGIG-PGSVCTTRKKTGVGYP 207 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTBCHHHHHCBCCC
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHh---CCCEEEECCC-CCcCcCccccCCCCcc
Confidence 55677675 2333445555544444 45444 46778888777653 4898877532 21 12
Q ss_pred HHHHHHHHh---ccCCCcEEEEEcCCChHHHHHHHhcCCcEEEe-CCC
Q 005719 84 GFKLLEHVG---LEMDLPVIMLSAYGDTKLVMKGITHGACDYLL-KPV 127 (681)
Q Consensus 84 G~elLe~I~---~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLl-KPv 127 (681)
-+.++..+. ...++|||+-..-.+...+.+++.+||+...+ +||
T Consensus 208 ~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 208 QLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 344444442 22479999988888999999999999998644 454
No 160
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=60.80 E-value=94 Score=29.15 Aligned_cols=72 Identities=15% Similarity=0.290 Sum_probs=50.7
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcC-CCceEEEEeCCCCCCCHHHHHHHH
Q 005719 18 DKFPIGMRVLAVDDDPTCLKVLENFLRACQY--EVT-VTNQAVTALKMLRENR-NNFDLVISDVHMPDMDGFKLLEHV 91 (681)
Q Consensus 18 ~~fP~GmRVLIVDDD~~~r~iL~~~Le~~gy--~Vt-~as~a~eALe~L~e~~-~~pDLVLlDV~MPdmDG~elLe~I 91 (681)
..+|.+.+|..||-++......++.+...+. .|. ...++.+.+..+.... ..||+|++|...+ .-..+++.+
T Consensus 78 ~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~--~~~~~l~~~ 153 (223)
T 3duw_A 78 RGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQ--NNPAYFEWA 153 (223)
T ss_dssp TTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGG--GHHHHHHHH
T ss_pred HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcH--HHHHHHHHH
Confidence 4466677999999999999999999987775 354 4667777766654332 4599999986532 234555555
No 161
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=60.43 E-value=60 Score=36.05 Aligned_cols=100 Identities=10% Similarity=0.143 Sum_probs=62.5
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC-----------CCH
Q 005719 23 GMRVLAVDD----DPTCLKVLENFLRACQ-YEVT--VTNQAVTALKMLRENRNNFDLVISDVHMPD-----------MDG 84 (681)
Q Consensus 23 GmRVLIVDD----D~~~r~iL~~~Le~~g-y~Vt--~as~a~eALe~L~e~~~~pDLVLlDV~MPd-----------mDG 84 (681)
|..+++|+. .....+.++++-+.++ ..|. .+.+...|..+... ..|.|++.+.--. ...
T Consensus 268 Gvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~a---Gad~i~vg~g~gsi~~~~~~~g~g~p~ 344 (511)
T 3usb_A 268 SVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEA---GANVVKVGIGPGSICTTRVVAGVGVPQ 344 (511)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTCCHHHHHCCCCCH
T ss_pred ccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHh---CCCEEEECCCCccccccccccCCCCCc
Confidence 566777763 3334445555544443 3333 35567777666653 3788876432111 223
Q ss_pred HHHHHHH---hccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 85 FKLLEHV---GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 85 ~elLe~I---~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
+.++..+ ....++|||+-..-.....+.+|+..||+..++-
T Consensus 345 ~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vG 388 (511)
T 3usb_A 345 LTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388 (511)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheec
Confidence 4555444 2335799999888889999999999999998765
No 162
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=60.07 E-value=15 Score=37.14 Aligned_cols=76 Identities=18% Similarity=0.190 Sum_probs=50.6
Q ss_pred CCeEE--EECCHHHHHHHHHhcCCCceEEEEeCC-CC---CCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCc
Q 005719 47 QYEVT--VTNQAVTALKMLRENRNNFDLVISDVH-MP---DMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGAC 120 (681)
Q Consensus 47 gy~Vt--~as~a~eALe~L~e~~~~pDLVLlDV~-MP---dmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~ 120 (681)
|..+. ++.+..++.+.... ..|+|+.=-. .. +..+.+.++.++...++|||+...-.+.+.+.+++..||+
T Consensus 126 g~~vi~~~~~~~~~a~~~~~~---gad~v~~~~~~~Gt~~~~~~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~GAd 202 (264)
T 1xm3_A 126 GFIVLPYTSDDVVLARKLEEL---GVHAIMPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGAD 202 (264)
T ss_dssp TCCEEEEECSCHHHHHHHHHH---TCSCBEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCS
T ss_pred CeEEEEEcCCCHHHHHHHHHh---CCCEEEECCcccCCCCCCCCHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCC
Confidence 77666 33455555554433 2566633000 01 1234778888876678999999888889999999999999
Q ss_pred EEEeC
Q 005719 121 DYLLK 125 (681)
Q Consensus 121 DYLlK 125 (681)
.+++-
T Consensus 203 gViVG 207 (264)
T 1xm3_A 203 GVLLN 207 (264)
T ss_dssp EEEES
T ss_pred EEEEc
Confidence 98764
No 163
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=60.05 E-value=48 Score=34.98 Aligned_cols=107 Identities=13% Similarity=0.079 Sum_probs=69.8
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHHhCCCeEE-EECCHHHH-HHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 005719 23 GMRVLAVDDDP-TCLKVLENFLRACQYEVT-VTNQAVTA-LKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPV 99 (681)
Q Consensus 23 GmRVLIVDDD~-~~r~iL~~~Le~~gy~Vt-~as~a~eA-Le~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPV 99 (681)
.++++||.+.+ .....++++.+..+-.|. ...-..+. .+.+.. .|++++--. .+.-|+.+++.+. ..+||
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E~~~~~~lEAma--~G~Pv 392 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG----CDAIIIPSR-FEPCGLTQLYALR--YGCIP 392 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CCSSCSHHHHHHH--HTCEE
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhc----CCEEEECcc-cCCCCHHHHHHHH--CCCCE
Confidence 56777887654 356677777766655565 34433333 344442 577776433 3444666777663 45888
Q ss_pred EEEEcCCChHHHHHHHhcC---------CcEEEeCCCChHHHHHHHHHHH
Q 005719 100 IMLSAYGDTKLVMKGITHG---------ACDYLLKPVRIEELKNIWQHVI 140 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~G---------A~DYLlKPvs~eEL~~i~q~Vl 140 (681)
|+. .. ....+.+..| ..+++..|-+.++|.+.+..++
T Consensus 393 I~s-~~---gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 438 (485)
T 1rzu_A 393 VVA-RT---GGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTV 438 (485)
T ss_dssp EEE-SS---HHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHH
T ss_pred EEe-CC---CChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHH
Confidence 863 22 3455667777 7899999999999999998887
No 164
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=59.17 E-value=57 Score=35.95 Aligned_cols=100 Identities=16% Similarity=0.193 Sum_probs=63.9
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhC-CCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCCC------------CC
Q 005719 23 GMRVLAVD----DDPTCLKVLENFLRAC-QYEVTV--TNQAVTALKMLRENRNNFDLVISDVHMPD------------MD 83 (681)
Q Consensus 23 GmRVLIVD----DD~~~r~iL~~~Le~~-gy~Vt~--as~a~eALe~L~e~~~~pDLVLlDV~MPd------------mD 83 (681)
|..++++| ......+.++.+-+.+ +..|.. +.+..+|..+... ..|.|.+-+. |+ ..
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~vg~g-~Gs~~~t~~~~g~g~p 316 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEA---GADAVKVGIG-PGSICTTRIVAGVGVP 316 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTCHHHHHTCBCCC
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHc---CCCEEEECCC-CCcCCCccccCCCCcc
Confidence 45566665 3344455555555554 334443 5677777666652 4788887321 11 22
Q ss_pred HHHHHHHHhc---cCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCC
Q 005719 84 GFKLLEHVGL---EMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126 (681)
Q Consensus 84 G~elLe~I~~---~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKP 126 (681)
.++++..+.. ..++|||.-..-.....+.+++.+||+...+--
T Consensus 317 ~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vGs 362 (490)
T 4avf_A 317 QISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMGS 362 (490)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEECT
T ss_pred HHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeecH
Confidence 4555555532 357999998888889999999999999887653
No 165
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=58.89 E-value=62 Score=35.59 Aligned_cols=86 Identities=13% Similarity=0.183 Sum_probs=55.2
Q ss_pred HHHHHHHHHhC-CCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCC--------------CCCCHHHHHHHHhccCCCc
Q 005719 36 LKVLENFLRAC-QYEVTV--TNQAVTALKMLRENRNNFDLVISDVHM--------------PDMDGFKLLEHVGLEMDLP 98 (681)
Q Consensus 36 r~iL~~~Le~~-gy~Vt~--as~a~eALe~L~e~~~~pDLVLlDV~M--------------PdmDG~elLe~I~~~~dlP 98 (681)
.+.++.+-+.+ +..|.. +.+..+|..+... ..|.|.+-.+- |....+..++.+....++|
T Consensus 284 ~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~a---Gad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ip 360 (514)
T 1jcn_A 284 IAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDA---GVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFGVP 360 (514)
T ss_dssp HHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCC
T ss_pred HHHHHHHHHhCCCCceEecccchHHHHHHHHHc---CCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhCCCC
Confidence 44455544444 555542 5666666665543 36777774321 1122355666665556899
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
||....-.+...+.+++..||+...+
T Consensus 361 Via~GGI~~~~di~kala~GAd~V~i 386 (514)
T 1jcn_A 361 IIADGGIQTVGHVVKALALGASTVMM 386 (514)
T ss_dssp EEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred EEEECCCCCHHHHHHHHHcCCCeeeE
Confidence 99988888899999999999988654
No 166
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=58.63 E-value=19 Score=32.05 Aligned_cols=60 Identities=15% Similarity=0.166 Sum_probs=46.7
Q ss_pred ccCCCCccccchhhHHHHHHHHHHhcCCCCChhhHHhhcC--CCCCcHHHHHHhhhhhHhhhcccCC
Q 005719 208 TTQKKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMN--VEGLTRENVASHLQKFRLYLKRLSN 272 (681)
Q Consensus 208 s~~kk~r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~--v~glt~~~v~ShLqkyr~~l~~~~~ 272 (681)
...+++|..||+|=....++.|++.|..+ =+.|++.+. .+|-|--+++- |||.++|+...
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~--W~~I~~~~~~~f~~RT~v~lKd---rWrnllk~~~~ 68 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGR--WRDVKLCAFEDADHRTYVDLKD---KWKTLVHTAKI 68 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSS--HHHHHSSSSSSTTCCCHHHHHH---HHHHHHHTTTC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCC--hHHHHHHhccccCCCCHHHHHH---HHHHHHhhccC
Confidence 34677889999999999999999999533 256777652 37899999987 89999987543
No 167
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=57.81 E-value=52 Score=34.74 Aligned_cols=107 Identities=7% Similarity=0.019 Sum_probs=64.1
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHHhCCCeEE-EECCHHHH-HHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 005719 23 GMRVLAVDDDP-TCLKVLENFLRACQYEVT-VTNQAVTA-LKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPV 99 (681)
Q Consensus 23 GmRVLIVDDD~-~~r~iL~~~Le~~gy~Vt-~as~a~eA-Le~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPV 99 (681)
.++++||.+.+ .....++++.+..+-.|. ...-..+. .+.+.. .|++++--. .+.-|+.+++.+. ..+||
T Consensus 321 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E~~g~~~lEAma--~G~Pv 393 (485)
T 2qzs_A 321 GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGG----ADVILVPSR-FEPCGLTQLYGLK--YGTLP 393 (485)
T ss_dssp TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CCSSCSHHHHHHH--HTCEE
T ss_pred CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHh----CCEEEECCc-cCCCcHHHHHHHH--CCCCE
Confidence 45666665433 345566666655544453 33332333 233432 466665432 3344566666653 35888
Q ss_pred EEEEcCCChHHHHHHHhcC---------CcEEEeCCCChHHHHHHHHHHH
Q 005719 100 IMLSAYGDTKLVMKGITHG---------ACDYLLKPVRIEELKNIWQHVI 140 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~G---------A~DYLlKPvs~eEL~~i~q~Vl 140 (681)
|+. . ..-..+.+..| ..+++..|-+.++|.+.+..++
T Consensus 394 I~s-~---~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll 439 (485)
T 2qzs_A 394 LVR-R---TGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAF 439 (485)
T ss_dssp EEE-S---SHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHH
T ss_pred EEC-C---CCCccceeccCccccccccccceEEECCCCHHHHHHHHHHHH
Confidence 864 2 23455567777 8899999999999999998887
No 168
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=57.64 E-value=98 Score=30.31 Aligned_cols=70 Identities=11% Similarity=0.234 Sum_probs=49.7
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhc---CCCceEEEEeCCCCCCCHHHHHHHH
Q 005719 20 FPIGMRVLAVDDDPTCLKVLENFLRACQY--EVT-VTNQAVTALKMLREN---RNNFDLVISDVHMPDMDGFKLLEHV 91 (681)
Q Consensus 20 fP~GmRVLIVDDD~~~r~iL~~~Le~~gy--~Vt-~as~a~eALe~L~e~---~~~pDLVLlDV~MPdmDG~elLe~I 91 (681)
+|.+.+|..||-++......++.++..++ .|. ...++.+.+..+... ...||+|++|... .+-..+++.+
T Consensus 101 ~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~--~~~~~~l~~~ 176 (247)
T 1sui_A 101 IPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADK--DNYLNYHKRL 176 (247)
T ss_dssp SCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCS--TTHHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCch--HHHHHHHHHH
Confidence 46577999999999999999999988776 454 456777766655321 3469999999653 2344555554
No 169
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=57.38 E-value=64 Score=33.27 Aligned_cols=108 Identities=12% Similarity=0.169 Sum_probs=65.4
Q ss_pred CcEEEEEeCC---HHHHHHHHHHHHhCCC--eEEEECCH--HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC
Q 005719 23 GMRVLAVDDD---PTCLKVLENFLRACQY--EVTVTNQA--VTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEM 95 (681)
Q Consensus 23 GmRVLIVDDD---~~~r~iL~~~Le~~gy--~Vt~as~a--~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~ 95 (681)
.++++|+.+. ......+++++++.+. .|...... .+..+.+.. .|++++-. ..+.-|..+++.+. .
T Consensus 276 ~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~----adv~v~ps-~~e~~~~~~~Eama--~ 348 (438)
T 3c48_A 276 NLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRA----ADIVAVPS-FNESFGLVAMEAQA--S 348 (438)
T ss_dssp SEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHH----CSEEEECC-SCCSSCHHHHHHHH--T
T ss_pred ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHh----CCEEEECc-cccCCchHHHHHHH--c
Confidence 4566666651 1234556666665542 35554432 455555542 47777643 23444667777763 5
Q ss_pred CCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 96 DLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 96 dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
.+|||+.. .. ...+.+..|...++..|-+.++|.+.+..++.
T Consensus 349 G~PvI~~~-~~---~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 390 (438)
T 3c48_A 349 GTPVIAAR-VG---GLPIAVAEGETGLLVDGHSPHAWADALATLLD 390 (438)
T ss_dssp TCCEEEES-CT---THHHHSCBTTTEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEecC-CC---ChhHHhhCCCcEEECCCCCHHHHHHHHHHHHc
Confidence 68988643 22 23445677888999999999999999988864
No 170
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=56.43 E-value=17 Score=35.77 Aligned_cols=84 Identities=13% Similarity=0.102 Sum_probs=50.4
Q ss_pred HHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCce-EEEEeCCCCCCC---------HHHHHHHHhccCCCcEEEEEc
Q 005719 38 VLENFLRACQYEVTVTN---QAVTALKMLRENRNNFD-LVISDVHMPDMD---------GFKLLEHVGLEMDLPVIMLSA 104 (681)
Q Consensus 38 iL~~~Le~~gy~Vt~as---~a~eALe~L~e~~~~pD-LVLlDV~MPdmD---------G~elLe~I~~~~dlPVImLSa 104 (681)
.+.+.+++.|..+...- +..+.++.+... .| +|.+ +..++.. .++.++.++...++||++-..
T Consensus 124 ~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~---~d~~i~~-~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GG 199 (248)
T 1geq_A 124 EFTEIAREEGIKTVFLAAPNTPDERLKVIDDM---TTGFVYL-VSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFG 199 (248)
T ss_dssp HHHHHHHHHTCEEEEEECTTCCHHHHHHHHHH---CSSEEEE-ECCC-------CCCHHHHHHHHHHHHHCSSCEEEESC
T ss_pred HHHHHHHHhCCCeEEEECCCCHHHHHHHHHhc---CCCeEEE-EECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEee
Confidence 34444555565554332 335555555433 33 5543 2334432 345677776555799888777
Q ss_pred CCChHHHHHHHhcCCcEEEeC
Q 005719 105 YGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 105 ~~d~e~v~kAl~~GA~DYLlK 125 (681)
-...+.+.+++..||+.+++-
T Consensus 200 I~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 200 VSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp CCSHHHHHHHHHTTCSEEEEC
T ss_pred cCCHHHHHHHHHcCCCEEEEc
Confidence 777788888889999998865
No 171
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=56.16 E-value=59 Score=32.61 Aligned_cols=69 Identities=13% Similarity=0.128 Sum_probs=50.6
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHhcc--CCCcEEEEEcCCChHHHHHHHhcCCcEE
Q 005719 52 VTNQAVTALKMLRENRNNFDLVISDVHMPD-------MDGFKLLEHVGLE--MDLPVIMLSAYGDTKLVMKGITHGACDY 122 (681)
Q Consensus 52 ~as~a~eALe~L~e~~~~pDLVLlDV~MPd-------mDG~elLe~I~~~--~dlPVImLSa~~d~e~v~kAl~~GA~DY 122 (681)
.+.+..|+.+... ..+|.|.+.--.|. .-|++.++.+... .++|||++.+- +.+.+.+.+..||+.+
T Consensus 141 S~ht~~Ea~~A~~---~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gv 216 (243)
T 3o63_A 141 STHDPDQVAAAAA---GDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRI 216 (243)
T ss_dssp EECSHHHHHHHHH---SSCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCE
T ss_pred eCCCHHHHHHHhh---CCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEE
Confidence 5678888777665 34899998654332 2368888888654 48999999876 5677888999999998
Q ss_pred Ee
Q 005719 123 LL 124 (681)
Q Consensus 123 Ll 124 (681)
.+
T Consensus 217 av 218 (243)
T 3o63_A 217 VV 218 (243)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 172
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=55.37 E-value=4.9 Score=41.08 Aligned_cols=49 Identities=29% Similarity=0.326 Sum_probs=35.7
Q ss_pred cEEEEEeCC--HHHHHHHHHHHHhCCCeEEEECCHHH--HHHHHHhcCCCceEEEEe
Q 005719 24 MRVLAVDDD--PTCLKVLENFLRACQYEVTVTNQAVT--ALKMLRENRNNFDLVISD 76 (681)
Q Consensus 24 mRVLIVDDD--~~~r~iL~~~Le~~gy~Vt~as~a~e--ALe~L~e~~~~pDLVLlD 76 (681)
.|||||+++ +.....|.+.|+..||+|++.....- -.+.|. .||+||++
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~----~yDvIIl~ 57 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA----KQDLVILS 57 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH----TCSEEEEE
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh----cCCEEEEc
Confidence 489999988 66788899999999999998764321 122332 38998886
No 173
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=55.00 E-value=29 Score=30.52 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=14.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEE
Q 005719 25 RVLAVDDDPTCLKVLENFLRACQYEVT 51 (681)
Q Consensus 25 RVLIVDDD~~~r~iL~~~Le~~gy~Vt 51 (681)
+|||+..|...+..+-+++.+.||.|.
T Consensus 53 kiliisndkqllkemlelisklgykvf 79 (134)
T 2lci_A 53 KILIISNDKQLLKEMLELISKLGYKVF 79 (134)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHhCceeE
Confidence 355555555555555455555555544
No 174
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=54.96 E-value=97 Score=31.52 Aligned_cols=106 Identities=18% Similarity=0.111 Sum_probs=70.2
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 005719 23 GMRVLAVDDDP-TCLKVLENFLRACQYEVTVTN---QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLP 98 (681)
Q Consensus 23 GmRVLIVDDD~-~~r~iL~~~Le~~gy~Vt~as---~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlP 98 (681)
.++++|+.+.+ .....++++.+..+ .++.+. ...+..+.+. ..|++++-... +.-|..++|.+. ..+|
T Consensus 285 ~~~l~i~G~g~~~~~~~l~~~~~~~~-~~~~~~g~~~~~~~~~~~~----~adv~v~ps~~-e~~~~~~~EAma--~G~P 356 (439)
T 3fro_A 285 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYG----SVDFVIIPSYF-EPFGLVALEAMC--LGAI 356 (439)
T ss_dssp GEEEEEECCCCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHT----TCSEEEECBSC-CSSCHHHHHHHH--TTCE
T ss_pred CeEEEEEcCCChhHHHHHHHHHhhcC-CEEEEcCCCCHHHHHHHHH----HCCEEEeCCCC-CCccHHHHHHHH--CCCC
Confidence 46777776554 34467777777777 555443 3444444443 26887775443 455677777764 4688
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
||+- .. ....+.+..| ..++..|-+.++|.+.+..++.
T Consensus 357 vi~s-~~---~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 357 PIAS-AV---GGLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp EEEE-SS---THHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred eEEc-CC---CCcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 8863 32 2344555567 8999999999999999998876
No 175
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=54.94 E-value=48 Score=32.20 Aligned_cols=70 Identities=21% Similarity=0.351 Sum_probs=49.2
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhc---CCCceEEEEeCCCCCCCHHHHHHHH
Q 005719 20 FPIGMRVLAVDDDPTCLKVLENFLRACQY--EVT-VTNQAVTALKMLREN---RNNFDLVISDVHMPDMDGFKLLEHV 91 (681)
Q Consensus 20 fP~GmRVLIVDDD~~~r~iL~~~Le~~gy--~Vt-~as~a~eALe~L~e~---~~~pDLVLlDV~MPdmDG~elLe~I 91 (681)
+|.+-+|..||-++...+..++.+++.|+ .|. ...++.+.+..+... ...||+|++|...+ +-.++++.+
T Consensus 92 ~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~--~~~~~l~~~ 167 (237)
T 3c3y_A 92 IPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKP--NYIKYHERL 167 (237)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGG--GHHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchH--HHHHHHHHH
Confidence 46567999999999999999999988776 354 456777776655321 24699999996422 234455544
No 176
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=53.18 E-value=43 Score=27.22 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=45.6
Q ss_pred CCCccccchhhHHHHHHHHHHhcCCCCChhhHHhhcC-CCCCcHHHHHHhhhhhHhhhcccCC
Q 005719 211 KKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMN-VEGLTRENVASHLQKFRLYLKRLSN 272 (681)
Q Consensus 211 kk~r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~-v~glt~~~v~ShLqkyr~~l~~~~~ 272 (681)
.+.|-.||+|=-...++.|++.|. .=+.|+.--. .++-|.-+++. |||...|+.++
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~---~W~~I~~~y~f~~~RT~VdLKd---k~r~L~k~~~~ 61 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN---HWNSILWSFPFQKGRRAVDLAH---KYHRLISGPSS 61 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS---CHHHHHHHSCCCTTCCHHHHHH---HHHHHHTCSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH---hHHHHHHhCCCccCcccchHHH---HHHHHHhcccC
Confidence 457888999999999999999994 4578886433 57899999998 99999998653
No 177
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=53.09 E-value=19 Score=29.79 Aligned_cols=46 Identities=17% Similarity=0.313 Sum_probs=36.0
Q ss_pred ccccchhhHHHHHHHHHHhcCCCCChh---hHHhhcCCCCCcHHHHHHhhhhhH
Q 005719 214 RVVWTPELHRKFVGAVNQLGVDKAVPK---KILDLMNVEGLTRENVASHLQKFR 264 (681)
Q Consensus 214 r~~Wt~eLh~~F~~av~~lG~~ka~Pk---~il~~m~v~glt~~~v~ShLqkyr 264 (681)
+-.||.|=++.|..|+..++. -+|. +|.+.| |-|-++|+.|-+++.
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~--~t~~RW~~IA~~l---gRt~~eV~~~y~~L~ 56 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPG--GTPGRWEKIAHEL---GRSVTDVTTKAKQLK 56 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCT--TCTTHHHHHHHHH---TSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCC--CCCcHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 446999999999999999873 3454 567776 689999999766553
No 178
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=52.56 E-value=97 Score=28.04 Aligned_cols=108 Identities=12% Similarity=0.166 Sum_probs=65.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHH--h--CCCeEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 005719 23 GMRVLAVDDDPTCLKVLENFLR--A--CQYEVTVTN--QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMD 96 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le--~--~gy~Vt~as--~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~d 96 (681)
.++++|+.+.+.. ..++++++ . ..-.|.... ...+..+.+.. .|++|+-.. .+.-|..+++.+. ..
T Consensus 50 ~~~l~i~G~~~~~-~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~----adi~v~ps~-~e~~~~~~~Eama--~G 121 (177)
T 2f9f_A 50 DEKLYIVGWFSKG-DHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR----CKGLLCTAK-DEDFGLTPIEAMA--SG 121 (177)
T ss_dssp TSCEEEEBCCCTT-STHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH----CSEEEECCS-SCCSCHHHHHHHH--TT
T ss_pred CcEEEEEecCccH-HHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCC-cCCCChHHHHHHH--cC
Confidence 4677777654321 23334443 2 122344433 33445555543 578776322 3444677777764 46
Q ss_pred CcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 97 LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 97 lPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
+|||+.. .....+.+..|...++. +-+.++|.+.+..++...
T Consensus 122 ~PvI~~~----~~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~~ 163 (177)
T 2f9f_A 122 KPVIAVN----EGGFKETVINEKTGYLV-NADVNEIIDAMKKVSKNP 163 (177)
T ss_dssp CCEEEES----SHHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHCT
T ss_pred CcEEEeC----CCCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhCH
Confidence 8888642 24455667778889999 999999999999988543
No 179
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=52.56 E-value=13 Score=38.10 Aligned_cols=55 Identities=20% Similarity=0.270 Sum_probs=41.0
Q ss_pred HHHHHHHhcc-CCCcEEEEEcCC------ChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 005719 85 FKLLEHVGLE-MDLPVIMLSAYG------DTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139 (681)
Q Consensus 85 ~elLe~I~~~-~dlPVImLSa~~------d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~V 139 (681)
+++++.++.. .++||++|+-.. -...+.++.+.|++..++-.+..+|.....+.+
T Consensus 83 ~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~ 144 (267)
T 3vnd_A 83 FDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAA 144 (267)
T ss_dssp HHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHH
Confidence 5566666655 789999997543 256788899999999999888888766555544
No 180
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=51.88 E-value=47 Score=33.43 Aligned_cols=74 Identities=15% Similarity=0.225 Sum_probs=48.7
Q ss_pred HHHHHHHHhcCCCceEEEEeCCC------CCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChH
Q 005719 57 VTALKMLRENRNNFDLVISDVHM------PDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIE 130 (681)
Q Consensus 57 ~eALe~L~e~~~~pDLVLlDV~M------PdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~e 130 (681)
.+..+.+.. .|++|+-... ++.-|..+++.+. ..+|||+ +... ...+.+..| ..++..|-+.+
T Consensus 264 ~~~~~~~~~----ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a--~G~PvI~-~~~~---~~~e~i~~~-~g~~~~~~d~~ 332 (394)
T 3okp_A 264 QDMINTLAA----ADIFAMPARTRGGGLDVEGLGIVYLEAQA--CGVPVIA-GTSG---GAPETVTPA-TGLVVEGSDVD 332 (394)
T ss_dssp HHHHHHHHH----CSEEEECCCCBGGGTBCCSSCHHHHHHHH--TTCCEEE-CSST---TGGGGCCTT-TEEECCTTCHH
T ss_pred HHHHHHHHh----CCEEEecCccccccccccccCcHHHHHHH--cCCCEEE-eCCC---ChHHHHhcC-CceEeCCCCHH
Confidence 444444432 4777764433 1445677777764 4689886 3322 233446677 89999999999
Q ss_pred HHHHHHHHHHH
Q 005719 131 ELKNIWQHVIR 141 (681)
Q Consensus 131 EL~~i~q~Vlr 141 (681)
+|.+.+..++.
T Consensus 333 ~l~~~i~~l~~ 343 (394)
T 3okp_A 333 KLSELLIELLD 343 (394)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999988864
No 181
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=51.33 E-value=97 Score=34.20 Aligned_cols=99 Identities=19% Similarity=0.237 Sum_probs=63.6
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhC-CCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCCC------------CC
Q 005719 23 GMRVLAVD----DDPTCLKVLENFLRAC-QYEVTV--TNQAVTALKMLRENRNNFDLVISDVHMPD------------MD 83 (681)
Q Consensus 23 GmRVLIVD----DD~~~r~iL~~~Le~~-gy~Vt~--as~a~eALe~L~e~~~~pDLVLlDV~MPd------------mD 83 (681)
|..+++|+ +.....+.++++-+.+ +..|.. +.+...|..++.. ..|.|++.+. |+ ..
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~Vg~g-~Gs~~~tr~~~g~g~p 318 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIG-PGSICTTRIVTGVGVP 318 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHH---TCSEEEECSS-CCTTBCHHHHHCCCCC
T ss_pred cCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHh---CCCEEEECCC-CCcCcccccccCCCcc
Confidence 45667776 3444556666665555 444433 5677777666653 3788887532 11 12
Q ss_pred HHHHHHHHh---ccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 84 GFKLLEHVG---LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 84 G~elLe~I~---~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
.+.++..+. ...++|||.-..-.....+.+++..||+..++-
T Consensus 319 ~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iG 363 (496)
T 4fxs_A 319 QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 363 (496)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEec
Confidence 345555442 234799999888888999999999999988765
No 182
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=51.12 E-value=87 Score=30.50 Aligned_cols=71 Identities=23% Similarity=0.349 Sum_probs=48.6
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 005719 18 DKFPIGMRVLAVDDDPTCLKVLENFLRACQYE--VT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHV 91 (681)
Q Consensus 18 ~~fP~GmRVLIVDDD~~~r~iL~~~Le~~gy~--Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I 91 (681)
..+|.+.+|..||-++......++.++..+.. |. ...++.+.+..+. ....||+|++|...+ +-..+++.+
T Consensus 83 ~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~-~~~~fD~V~~d~~~~--~~~~~l~~~ 156 (248)
T 3tfw_A 83 RELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG-ECPAFDLIFIDADKP--NNPHYLRWA 156 (248)
T ss_dssp TTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC-SCCCCSEEEECSCGG--GHHHHHHHH
T ss_pred HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC-CCCCeEEEEECCchH--HHHHHHHHH
Confidence 34666789999999999999999999887753 54 4566666554331 123699999987432 334456555
No 183
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=50.93 E-value=66 Score=34.27 Aligned_cols=87 Identities=11% Similarity=0.120 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhC-CCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCC-----------CCCCHHHHHHHHh---ccCCC
Q 005719 35 CLKVLENFLRAC-QYEVTV--TNQAVTALKMLRENRNNFDLVISDVHM-----------PDMDGFKLLEHVG---LEMDL 97 (681)
Q Consensus 35 ~r~iL~~~Le~~-gy~Vt~--as~a~eALe~L~e~~~~pDLVLlDV~M-----------PdmDG~elLe~I~---~~~dl 97 (681)
..+.++.+-+.. +..|.. +.+..+|..+.. ..+|.|.+-..- .+...++.+..+. ...++
T Consensus 181 ~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~---~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~i 257 (404)
T 1eep_A 181 IIELIKKIKTKYPNLDLIAGNIVTKEAALDLIS---VGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTNI 257 (404)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHT---TTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHh---cCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcCc
Confidence 444444433444 556653 556666655543 348888882210 0122455555553 24579
Q ss_pred cEEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 98 PVIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 98 PVImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
|||....-.+...+.+++..||+...+
T Consensus 258 pVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 258 CIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp EEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred eEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 999988888899999999999998765
No 184
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=50.65 E-value=31 Score=26.27 Aligned_cols=50 Identities=22% Similarity=0.258 Sum_probs=38.9
Q ss_pred ccccchhhHHHHHHHHHHhcCCCCChhhHHhhcCCCCCcHHHHHHhhhhhHhhhc
Q 005719 214 RVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFRLYLK 268 (681)
Q Consensus 214 r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~v~glt~~~v~ShLqkyr~~l~ 268 (681)
|-.||+|=....+++|+..|..+ =+.|.+.|+..|-|-.+++- +|+.++|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~--W~~Ia~~~~~~~Rt~~qcr~---Rw~~~~k 51 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGN--WSKILLHYKFNNRTSVMLKD---RWRTMKK 51 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTC--HHHHHHHSCCSSCCHHHHHH---HHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCC--HHHHHHHcCCCCCCHHHHHH---HHHHHHc
Confidence 45799999999999999999432 35788888655788888876 6776665
No 185
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=50.44 E-value=23 Score=36.21 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=39.6
Q ss_pred HHHHHHHhccCCCcEEEEEcCC------ChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 005719 85 FKLLEHVGLEMDLPVIMLSAYG------DTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139 (681)
Q Consensus 85 ~elLe~I~~~~dlPVImLSa~~------d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~V 139 (681)
+++++.++...++|||+|+-.. -...+..+.+.||+.++.-.+..+++...+..+
T Consensus 80 ~~~v~~ir~~~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~ 140 (271)
T 1ujp_A 80 LELVREVRALTEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLA 140 (271)
T ss_dssp HHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHH
Confidence 4667777666789999985322 245667788999999999877777766655544
No 186
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=49.91 E-value=59 Score=32.47 Aligned_cols=106 Identities=18% Similarity=0.321 Sum_probs=63.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQ--YEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVI 100 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~g--y~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVI 100 (681)
.++++|+.+.+ ...+++++++.+ -.|.......+..+.+.. .|++++-.. .+.-|..+++.+. ..+|||
T Consensus 228 ~~~l~i~G~g~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~ps~-~e~~~~~~~Ea~a--~G~Pvi 298 (374)
T 2iw1_A 228 NTLLFVVGQDK--PRKFEALAEKLGVRSNVHFFSGRNDVSELMAA----ADLLLHPAY-QEAAGIVLLEAIT--AGLPVL 298 (374)
T ss_dssp TEEEEEESSSC--CHHHHHHHHHHTCGGGEEEESCCSCHHHHHHH----CSEEEECCS-CCSSCHHHHHHHH--HTCCEE
T ss_pred ceEEEEEcCCC--HHHHHHHHHHcCCCCcEEECCCcccHHHHHHh----cCEEEeccc-cCCcccHHHHHHH--CCCCEE
Confidence 35666666543 234555554443 245555443344444432 477776433 2444677777763 467988
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeC-CCChHHHHHHHHHHHH
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLK-PVRIEELKNIWQHVIR 141 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlK-Pvs~eEL~~i~q~Vlr 141 (681)
+....... +.+..|...++.. |.+.++|.+.+..++.
T Consensus 299 ~~~~~~~~----e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~ 336 (374)
T 2iw1_A 299 TTAVCGYA----HYIADANCGTVIAEPFSQEQLNEVLRKALT 336 (374)
T ss_dssp EETTSTTT----HHHHHHTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred EecCCCch----hhhccCCceEEeCCCCCHHHHHHHHHHHHc
Confidence 75433332 3355667789987 8999999999988875
No 187
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=49.48 E-value=2.3e+02 Score=29.31 Aligned_cols=91 Identities=12% Similarity=0.119 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHhCC-CeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCCCC--C------------HHHHHHHHhc
Q 005719 31 DDPTCLKVLENFLRACQ-YEVTV--TNQAVTALKMLRENRNNFDLVISDVHMPDM--D------------GFKLLEHVGL 93 (681)
Q Consensus 31 DD~~~r~iL~~~Le~~g-y~Vt~--as~a~eALe~L~e~~~~pDLVLlDV~MPdm--D------------G~elLe~I~~ 93 (681)
+.....+.++.+-+... .-|.. +.+..+|..++.. ..|.|++.-+ ++. + .++++..+..
T Consensus 132 ~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~a---Gad~Ivvs~h-gG~~~~~~~~~~~g~~g~~~~~l~~v~~ 207 (336)
T 1ypf_A 132 HSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENA---GADATKVGIG-PGKVCITKIKTGFGTGGWQLAALRWCAK 207 (336)
T ss_dssp CSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSS-CSTTCHHHHHHSCSSTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHc---CCCEEEEecC-CCceeecccccCcCCchhHHHHHHHHHH
Confidence 44555666666655553 33332 4567777776653 3788888433 211 1 3666777755
Q ss_pred cCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 94 EMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 94 ~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
..++|||+-..-.+...+.+++..||+...+-
T Consensus 208 ~~~ipVIa~GGI~~g~Dv~kalalGAdaV~iG 239 (336)
T 1ypf_A 208 AASKPIIADGGIRTNGDVAKSIRFGATMVMIG 239 (336)
T ss_dssp TCSSCEEEESCCCSTHHHHHHHHTTCSEEEES
T ss_pred HcCCcEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 56899999988899999999999999987553
No 188
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=49.46 E-value=70 Score=30.04 Aligned_cols=72 Identities=14% Similarity=0.146 Sum_probs=49.4
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhcC--CCceEEEEeCCCCCCCHHHHHHHH
Q 005719 18 DKFPIGMRVLAVDDDPTCLKVLENFLRACQYE--VT-VTNQAVTALKMLRENR--NNFDLVISDVHMPDMDGFKLLEHV 91 (681)
Q Consensus 18 ~~fP~GmRVLIVDDD~~~r~iL~~~Le~~gy~--Vt-~as~a~eALe~L~e~~--~~pDLVLlDV~MPdmDG~elLe~I 91 (681)
..+|.+.+|..||-++...+..++.++..+.. |. ...++.+.+..+.... ..||+|++|... .+-.++++.+
T Consensus 84 ~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~--~~~~~~l~~~ 160 (225)
T 3tr6_A 84 LALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADK--ANTDLYYEES 160 (225)
T ss_dssp TTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSCG--GGHHHHHHHH
T ss_pred HhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCCH--HHHHHHHHHH
Confidence 34666789999999999999999999877653 54 4567777666554211 469999998742 2233445544
No 189
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=49.36 E-value=33 Score=26.80 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=36.8
Q ss_pred ccccchhhHHHHHHHHHHhcCCCCChhhHHhhcCCCCCcHHHHHHhhhhhH
Q 005719 214 RVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFR 264 (681)
Q Consensus 214 r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~v~glt~~~v~ShLqkyr 264 (681)
+-.||++=.++++++|++.|..+ =++|.+.|+. |-|..+++.|-++|-
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~--W~~IA~~~~~-~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGN--WADIADYVGN-ARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTC--HHHHHHHHCS-SCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCC--HHHHHHHHCC-CCCHHHHHHHHHHHc
Confidence 34699999999999999999532 2466666532 789999999887763
No 190
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=49.34 E-value=66 Score=36.54 Aligned_cols=102 Identities=16% Similarity=0.204 Sum_probs=66.0
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCC-CCH-HHHHHHHh-
Q 005719 23 GMRVLAV----DDDPTCLKVLENFLRACQYEVTVTN---QAVTALKMLRENRNNFDLVISDVHMPD-MDG-FKLLEHVG- 92 (681)
Q Consensus 23 GmRVLIV----DDD~~~r~iL~~~Le~~gy~Vt~as---~a~eALe~L~e~~~~pDLVLlDV~MPd-mDG-~elLe~I~- 92 (681)
+-+||+. |-+..-..++..+|+..||+|+... ...+.++.+.+. .+|+|.+...|.. +.. -++++.++
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~--~~diVgLS~l~t~~~~~m~~~i~~Lr~ 175 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEV--NADLIGLSGLITPSLDEMVNVAKEMER 175 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHH--TCSEEEEECCSTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4578887 6777788888899999999998654 466777777655 4899999987753 221 23445553
Q ss_pred ccCCCcEEEEEcCCChHHHHHHH---hcCCcEEEeCC
Q 005719 93 LEMDLPVIMLSAYGDTKLVMKGI---THGACDYLLKP 126 (681)
Q Consensus 93 ~~~dlPVImLSa~~d~e~v~kAl---~~GA~DYLlKP 126 (681)
...++||++-.+..........+ ..||+.|....
T Consensus 176 ~g~~i~ViVGGa~~~~~~a~~~i~p~~~GAD~ya~DA 212 (579)
T 3bul_A 176 QGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQNA 212 (579)
T ss_dssp TTCCSCEEEESTTCCHHHHHHHTGGGCSSCEEECCSH
T ss_pred cCCCCeEEEEccccchhhhhhhhhhcccCCeEEECCH
Confidence 34578887655545544432111 23888776443
No 191
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=48.92 E-value=67 Score=30.25 Aligned_cols=71 Identities=17% Similarity=0.235 Sum_probs=48.7
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcC--CCceEEEEeCCCCCCCHHHHHHHH
Q 005719 19 KFPIGMRVLAVDDDPTCLKVLENFLRACQY--EVT-VTNQAVTALKMLRENR--NNFDLVISDVHMPDMDGFKLLEHV 91 (681)
Q Consensus 19 ~fP~GmRVLIVDDD~~~r~iL~~~Le~~gy--~Vt-~as~a~eALe~L~e~~--~~pDLVLlDV~MPdmDG~elLe~I 91 (681)
.+|.+.+|..||-++......++.++..+. .+. ...++.+.+..+.... ..||+|++|.. ..+-.++++.+
T Consensus 90 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~--~~~~~~~l~~~ 165 (229)
T 2avd_A 90 ALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD--KENCSAYYERC 165 (229)
T ss_dssp TSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC--STTHHHHHHHH
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC--HHHHHHHHHHH
Confidence 456577999999999999999999987764 454 4567766665554321 35999999864 23334455554
No 192
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=48.88 E-value=25 Score=36.45 Aligned_cols=69 Identities=13% Similarity=0.063 Sum_probs=47.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHH
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMP-DMDGFKLLEHV 91 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MP-dmDG~elLe~I 91 (681)
+-++.+||-++.....|++-++...-..+...++.+++..+......+|+||+|-=-. ..+.-++++.|
T Consensus 113 ~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L 182 (283)
T 2oo3_A 113 QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAI 182 (283)
T ss_dssp TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHH
Confidence 4689999999999999999887633223345678888877654434699999997332 22344455544
No 193
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=48.86 E-value=63 Score=31.11 Aligned_cols=71 Identities=18% Similarity=0.359 Sum_probs=48.7
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcC--CCceEEEEeCCCCCCCHHHHHHHH
Q 005719 19 KFPIGMRVLAVDDDPTCLKVLENFLRACQY--EVT-VTNQAVTALKMLRENR--NNFDLVISDVHMPDMDGFKLLEHV 91 (681)
Q Consensus 19 ~fP~GmRVLIVDDD~~~r~iL~~~Le~~gy--~Vt-~as~a~eALe~L~e~~--~~pDLVLlDV~MPdmDG~elLe~I 91 (681)
.+|.+.+|..||-++......++.++..++ .|. ...++.+.+..+.... ..||+|++|... .+-.++++.+
T Consensus 93 ~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~--~~~~~~l~~~ 168 (232)
T 3cbg_A 93 QLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADK--RNYPRYYEIG 168 (232)
T ss_dssp TSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCG--GGHHHHHHHH
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCH--HHHHHHHHHH
Confidence 456567999999999999999998877665 354 4567777666554322 469999998642 2234445554
No 194
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=48.50 E-value=85 Score=27.62 Aligned_cols=106 Identities=15% Similarity=0.225 Sum_probs=67.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECC--HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC-c
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQ--AVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDL-P 98 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~--a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dl-P 98 (681)
..++++|+.+.+. ...++++++..+..|.. .. ..+..+.+. ..|++++-.. .+.-|+.+++.+. ..+ |
T Consensus 31 ~~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~----~adv~v~ps~-~e~~~~~~~Eama--~G~vP 101 (166)
T 3qhp_A 31 QDIVLLLKGKGPD-EKKIKLLAQKLGVKAEF-GFVNSNELLEILK----TCTLYVHAAN-VESEAIACLEAIS--VGIVP 101 (166)
T ss_dssp GGEEEEEECCSTT-HHHHHHHHHHHTCEEEC-CCCCHHHHHHHHT----TCSEEEECCC-SCCCCHHHHHHHH--TTCCE
T ss_pred CCeEEEEEeCCcc-HHHHHHHHHHcCCeEEE-eecCHHHHHHHHH----hCCEEEECCc-ccCccHHHHHHHh--cCCCc
Confidence 3578888887554 46777778777776665 43 344444443 3688887443 4455777888764 465 8
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
||..+...... +.+..+.. +..|-+.++|...+..++.
T Consensus 102 vi~~~~~~~~~---~~~~~~~~--~~~~~~~~~l~~~i~~l~~ 139 (166)
T 3qhp_A 102 VIANSPLSATR---QFALDERS--LFEPNNAKDLSAKIDWWLE 139 (166)
T ss_dssp EEECCTTCGGG---GGCSSGGG--EECTTCHHHHHHHHHHHHH
T ss_pred EEeeCCCCchh---hhccCCce--EEcCCCHHHHHHHHHHHHh
Confidence 88733222221 22333433 7789999999999998875
No 195
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=48.42 E-value=19 Score=36.94 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=40.8
Q ss_pred HHHHHHHHhcc-CCCcEEEEEcC------CChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 005719 84 GFKLLEHVGLE-MDLPVIMLSAY------GDTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139 (681)
Q Consensus 84 G~elLe~I~~~-~dlPVImLSa~------~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~V 139 (681)
.+++++.++.. .++|||+|+-. .-...+.++.+.|++.+|+--+..+|.......+
T Consensus 84 ~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~ 146 (271)
T 3nav_A 84 CFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAA 146 (271)
T ss_dssp HHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 35667777655 78999999743 3355788899999999999878777755544433
No 196
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=48.25 E-value=1.3e+02 Score=31.62 Aligned_cols=77 Identities=17% Similarity=0.105 Sum_probs=53.4
Q ss_pred hCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCC---------CCC-------CCHHHHHHHHhccCCCcEEEEEcCCC
Q 005719 45 ACQYEVT-VTNQAVTALKMLRENRNNFDLVISDVH---------MPD-------MDGFKLLEHVGLEMDLPVIMLSAYGD 107 (681)
Q Consensus 45 ~~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~---------MPd-------mDG~elLe~I~~~~dlPVImLSa~~d 107 (681)
..+..|. .+.+..++..... ..+|.|+++-. .+. ...+++++.+....++|||+...-.+
T Consensus 143 ~~g~~v~~~v~t~~~a~~a~~---~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~ 219 (369)
T 3bw2_A 143 RAGTLTLVTATTPEEARAVEA---AGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMR 219 (369)
T ss_dssp HTTCEEEEEESSHHHHHHHHH---TTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCS
T ss_pred HCCCeEEEECCCHHHHHHHHH---cCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCC
Confidence 3455544 4566677665544 34899988531 110 23488888886666899998888778
Q ss_pred hHHHHHHHhcCCcEEEe
Q 005719 108 TKLVMKGITHGACDYLL 124 (681)
Q Consensus 108 ~e~v~kAl~~GA~DYLl 124 (681)
.+.+.+++..||+.+..
T Consensus 220 ~~~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 220 GGQIAAVLAAGADAAQL 236 (369)
T ss_dssp HHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 89999999999988754
No 197
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=47.83 E-value=74 Score=30.96 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=45.3
Q ss_pred CcEEEEEe------CCHHHHHHHHHHHHhCCCeEEEE----CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 005719 23 GMRVLAVD------DDPTCLKVLENFLRACQYEVTVT----NQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG 92 (681)
Q Consensus 23 GmRVLIVD------DD~~~r~iL~~~Le~~gy~Vt~a----s~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~ 92 (681)
+-||++|+ |...+...+.+.|++.|+++... .+..+..+.+++ .|.|++ |+.+-+.+++.++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~----ad~I~l----~GG~~~~l~~~L~ 98 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK----NDFIYV----TGGNTFFLLQELK 98 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH----SSEEEE----CCSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh----CCEEEE----CCCCHHHHHHHHH
Confidence 56899996 44457778889999999998887 367776666653 577776 6777777666653
No 198
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=47.40 E-value=82 Score=33.44 Aligned_cols=107 Identities=12% Similarity=0.122 Sum_probs=71.6
Q ss_pred cEEEEEeC--CH------------HHHHHHHHHHHhCCC--eEEEECC--HHHHHHHHHhcCCCc----eEEEEeCCCCC
Q 005719 24 MRVLAVDD--DP------------TCLKVLENFLRACQY--EVTVTNQ--AVTALKMLRENRNNF----DLVISDVHMPD 81 (681)
Q Consensus 24 mRVLIVDD--D~------------~~r~iL~~~Le~~gy--~Vt~as~--a~eALe~L~e~~~~p----DLVLlDV~MPd 81 (681)
.+++|+.+ .+ .+...+++++++.+. .|..... ..+..+.+.. . |++++--. .+
T Consensus 295 ~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~----a~~~~dv~v~pS~-~E 369 (499)
T 2r60_A 295 NLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAY----LASKGSVFALTSF-YE 369 (499)
T ss_dssp EEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHH----HHHTTCEEEECCS-CB
T ss_pred eEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHh----cCcCCCEEEECcc-cC
Confidence 46778877 22 126778888877664 3666554 3555566653 5 88877432 34
Q ss_pred CCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 82 MDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 82 mDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
.-|+.+++.+. ..+|||+.. . ....+.+..|...++..|-+.++|.+.+..++.
T Consensus 370 g~~~~~lEAma--~G~PvI~s~-~---~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 370 PFGLAPVEAMA--SGLPAVVTR-N---GGPAEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp CCCSHHHHHHH--TTCCEEEES-S---BHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred CCCcHHHHHHH--cCCCEEEec-C---CCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 45667777764 468988643 2 234556777888899999999999999988763
No 199
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=47.08 E-value=55 Score=35.24 Aligned_cols=92 Identities=17% Similarity=0.218 Sum_probs=50.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHH--HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAV--TALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG-LEMDLPV 99 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~--eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~-~~~dlPV 99 (681)
|..|+|||.|+...+.++ ..|+.|.. .++. +.|+.+. -...|+||+-+.-+ ..-..++..++ ..++++|
T Consensus 27 g~~vvvId~d~~~v~~~~----~~g~~vi~-GDat~~~~L~~ag--i~~A~~viv~~~~~-~~n~~i~~~ar~~~p~~~I 98 (413)
T 3l9w_A 27 GVKMVVLDHDPDHIETLR----KFGMKVFY-GDATRMDLLESAG--AAKAEVLINAIDDP-QTNLQLTEMVKEHFPHLQI 98 (413)
T ss_dssp TCCEEEEECCHHHHHHHH----HTTCCCEE-SCTTCHHHHHHTT--TTTCSEEEECCSSH-HHHHHHHHHHHHHCTTCEE
T ss_pred CCCEEEEECCHHHHHHHH----hCCCeEEE-cCCCCHHHHHhcC--CCccCEEEECCCCh-HHHHHHHHHHHHhCCCCeE
Confidence 566777777766544333 34555433 3322 2333321 23478888765321 11233344443 3466778
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
|+.+.. ........+.||+..+.
T Consensus 99 iara~~--~~~~~~L~~~Gad~Vi~ 121 (413)
T 3l9w_A 99 IARARD--VDHYIRLRQAGVEKPER 121 (413)
T ss_dssp EEEESS--HHHHHHHHHTTCSSCEE
T ss_pred EEEECC--HHHHHHHHHCCCCEEEC
Confidence 877654 55666778899987764
No 200
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=46.97 E-value=1.4e+02 Score=25.91 Aligned_cols=26 Identities=19% Similarity=-0.033 Sum_probs=13.1
Q ss_pred CCcEEEEEcCCChHHHHHHHhcCCcEEE
Q 005719 96 DLPVIMLSAYGDTKLVMKGITHGACDYL 123 (681)
Q Consensus 96 dlPVImLSa~~d~e~v~kAl~~GA~DYL 123 (681)
...||+..... .......+.|++..+
T Consensus 96 ~~~iia~~~~~--~~~~~l~~~G~~~vi 121 (141)
T 3llv_A 96 DVYAIVRVSSP--KKKEEFEEAGANLVV 121 (141)
T ss_dssp CCCEEEEESCG--GGHHHHHHTTCSEEE
T ss_pred CceEEEEEcCh--hHHHHHHHcCCCEEE
Confidence 44555554432 334445667875443
No 201
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=46.61 E-value=1.3e+02 Score=26.48 Aligned_cols=76 Identities=24% Similarity=0.260 Sum_probs=47.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHh--cCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRE--NRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVI 100 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e--~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVI 100 (681)
.|||.||-| +... .-++-.|.++..+.+..++.+.+++ .+..+.+|++.-++-+. --+.++.++.....|+|
T Consensus 3 ~mkiaVIgD-~dtv----~GFrLaGi~~~~v~~~ee~~~~~~~l~~~~digIIlIte~~a~~-i~~~i~~~~~~~~~P~I 76 (109)
T 2d00_A 3 PVRMAVIAD-PETA----QGFRLAGLEGYGASSAEEAQSLLETLVERGGYALVAVDEALLPD-PERAVERLMRGRDLPVL 76 (109)
T ss_dssp CCCEEEEEC-HHHH----HHHHHTTSEEEECSSHHHHHHHHHHHHHHCCCSEEEEETTTCSC-HHHHHHHHTTCCCCCEE
T ss_pred ccEEEEEeC-HHHH----HHHHHcCCeEEEeCCHHHHHHHHHHHhhCCCeEEEEEeHHHHHh-hHHHHHHHHhCCCCeEE
Confidence 589999999 3322 2233458888888887776655542 23468999998776552 22344555445568876
Q ss_pred EEEc
Q 005719 101 MLSA 104 (681)
Q Consensus 101 mLSa 104 (681)
+.-.
T Consensus 77 l~IP 80 (109)
T 2d00_A 77 LPIA 80 (109)
T ss_dssp EEES
T ss_pred EEEC
Confidence 6544
No 202
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=46.24 E-value=67 Score=26.55 Aligned_cols=91 Identities=16% Similarity=0.221 Sum_probs=52.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQ-YEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVI 100 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~g-y~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVI 100 (681)
.+++|+|+-- -.....+...|...| ++|+.+....+.++.+.. .....+..|+.- --++.+.+. ..-+|
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~--~~~~~~~~d~~~----~~~~~~~~~---~~d~v 73 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR--MGVATKQVDAKD----EAGLAKALG---GFDAV 73 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT--TTCEEEECCTTC----HHHHHHHTT---TCSEE
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh--CCCcEEEecCCC----HHHHHHHHc---CCCEE
Confidence 3579999999 666666666676778 888887765555555542 245666666542 222222222 34455
Q ss_pred EEEcC--CChHHHHHHHhcCCcEE
Q 005719 101 MLSAY--GDTKLVMKGITHGACDY 122 (681)
Q Consensus 101 mLSa~--~d~e~v~kAl~~GA~DY 122 (681)
+.+.. ........+.+.|+.-|
T Consensus 74 i~~~~~~~~~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 74 ISAAPFFLTPIIAKAAKAAGAHYF 97 (118)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEE
T ss_pred EECCCchhhHHHHHHHHHhCCCEE
Confidence 44432 22344555666776433
No 203
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=45.97 E-value=51 Score=32.27 Aligned_cols=97 Identities=16% Similarity=0.198 Sum_probs=61.8
Q ss_pred HHHHHHHhCCCeEEEE--CCHHHHHHHHHhcCCCceEEEEeCCC----CC-CCHHHHHHHH---hccCCCcEEEEEcCCC
Q 005719 38 VLENFLRACQYEVTVT--NQAVTALKMLRENRNNFDLVISDVHM----PD-MDGFKLLEHV---GLEMDLPVIMLSAYGD 107 (681)
Q Consensus 38 iL~~~Le~~gy~Vt~a--s~a~eALe~L~e~~~~pDLVLlDV~M----Pd-mDG~elLe~I---~~~~dlPVImLSa~~d 107 (681)
...+.|+..|+.+..- ..+...+..+..- +||.|=+|..+ .. .....+++.+ ....++.|| ...-++
T Consensus 143 ~~l~~l~~~G~~ialDdfG~g~ssl~~L~~l--~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~vi-aeGVEt 219 (259)
T 3s83_A 143 VILKTLRDAGAGLALDDFGTGFSSLSYLTRL--PFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEVV-AEGVEN 219 (259)
T ss_dssp HHHHHHHHHTCEEEEECC---CHHHHHHHHS--CCCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCEEE-ECCCCS
T ss_pred HHHHHHHHCCCEEEEECCCCCchhHHHHHhC--CCCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCeEE-EEeCCC
Confidence 3344566779988764 3555667777654 48999999633 11 1233445544 234566555 556667
Q ss_pred hHHHHHHHhcCCcE----EEeCCCChHHHHHHHH
Q 005719 108 TKLVMKGITHGACD----YLLKPVRIEELKNIWQ 137 (681)
Q Consensus 108 ~e~v~kAl~~GA~D----YLlKPvs~eEL~~i~q 137 (681)
.+....+.+.|++. |+.||...+++...+.
T Consensus 220 ~~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~ 253 (259)
T 3s83_A 220 AEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLN 253 (259)
T ss_dssp HHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEeecCcccCCCCHHHHHHHHH
Confidence 77788888889875 4779999999877554
No 204
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=45.75 E-value=91 Score=32.26 Aligned_cols=82 Identities=20% Similarity=0.212 Sum_probs=57.1
Q ss_pred HHHHhCCCeEEE-ECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHH
Q 005719 41 NFLRACQYEVTV-TNQAVTALKMLRENRNNFDLVISDVHMP-----DMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKG 114 (681)
Q Consensus 41 ~~Le~~gy~Vt~-as~a~eALe~L~e~~~~pDLVLlDV~MP-----dmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kA 114 (681)
+.++..+..|.. +.+..++..+.. ..+|.|+++-.-. ....+++++.+....++|||+-..-.+.+.+.++
T Consensus 118 ~~l~~~g~~v~~~v~s~~~a~~a~~---~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~a 194 (326)
T 3bo9_A 118 RELKENGTKVIPVVASDSLARMVER---AGADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAA 194 (326)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHH---TTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHH
T ss_pred HHHHHcCCcEEEEcCCHHHHHHHHH---cCCCEEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHH
Confidence 344445655543 566677766554 2478888864222 1346788888865568999998888889999999
Q ss_pred HhcCCcEEEeC
Q 005719 115 ITHGACDYLLK 125 (681)
Q Consensus 115 l~~GA~DYLlK 125 (681)
+..||+.+.+-
T Consensus 195 l~~GA~gV~vG 205 (326)
T 3bo9_A 195 FALGAEAVQMG 205 (326)
T ss_dssp HHHTCSEEEES
T ss_pred HHhCCCEEEec
Confidence 99999988654
No 205
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=45.60 E-value=61 Score=30.98 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=44.8
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEeCCCC--------CCCHHHHHHHHhccCC-CcEEEEEcCCChHHHHHHHhcCCcEEE
Q 005719 53 TNQAVTALKMLRENRNNFDLVISDVHMP--------DMDGFKLLEHVGLEMD-LPVIMLSAYGDTKLVMKGITHGACDYL 123 (681)
Q Consensus 53 as~a~eALe~L~e~~~~pDLVLlDV~MP--------dmDG~elLe~I~~~~d-lPVImLSa~~d~e~v~kAl~~GA~DYL 123 (681)
+.+..++.+.... .+|.|++..-.+ ...+++.++.+....+ +||++...-. .+.+.+++..||+.+.
T Consensus 123 ~~t~~e~~~a~~~---g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~ 198 (227)
T 2tps_A 123 AHTMSEVKQAEED---GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAGADGVS 198 (227)
T ss_dssp ECSHHHHHHHHHH---TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTTCSEEE
T ss_pred cCCHHHHHHHHhC---CCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHHcCCCEEE
Confidence 4677776554432 489998632222 1236788888865555 9998876665 6677778889998875
Q ss_pred e
Q 005719 124 L 124 (681)
Q Consensus 124 l 124 (681)
+
T Consensus 199 v 199 (227)
T 2tps_A 199 M 199 (227)
T ss_dssp E
T ss_pred E
Confidence 4
No 206
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=45.46 E-value=29 Score=33.63 Aligned_cols=68 Identities=15% Similarity=0.279 Sum_probs=47.3
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCe---EEEE-CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 005719 20 FPIGMRVLAVDDDPTCLKVLENFLRACQYE---VTVT-NQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHV 91 (681)
Q Consensus 20 fP~GmRVLIVDDD~~~r~iL~~~Le~~gy~---Vt~a-s~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I 91 (681)
+|.+-+|..||-++...+..++.++..|+. |.+. .++.+.+..+. ...||+|++|.... +-.++++.+
T Consensus 78 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~--~~~fD~V~~d~~~~--~~~~~l~~~ 149 (221)
T 3dr5_A 78 LADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA--NDSYQLVFGQVSPM--DLKALVDAA 149 (221)
T ss_dssp SCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC--TTCEEEEEECCCTT--THHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc--CCCcCeEEEcCcHH--HHHHHHHHH
Confidence 566779999999999999999999987764 6543 45555443321 34699999997543 333455554
No 207
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=44.93 E-value=39 Score=26.27 Aligned_cols=51 Identities=20% Similarity=0.248 Sum_probs=38.1
Q ss_pred CCCccccchhhHHHHHHHHHHhcCCCCChhhHHhhcCCCCCcHHHHHHhhhhhHhhhc
Q 005719 211 KKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFRLYLK 268 (681)
Q Consensus 211 kk~r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~v~glt~~~v~ShLqkyr~~l~ 268 (681)
...|-.||+|=.++++++|++.|..+ =+.|.+.| +|-|..+++. .|+.||+
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~~--W~~Ia~~~--~~Rt~~qcr~---Rw~~~l~ 55 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQD--WKFLASHF--PNRTDQQCQY---RWLRVLS 55 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTTC--HHHHHHHC--SSSCHHHHHH---HHHHTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCC--HHHHHHHc--cCCCHHHHHH---HHHHHcC
Confidence 44567899999999999999999422 24666665 6889999887 4555554
No 208
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=44.52 E-value=90 Score=32.26 Aligned_cols=79 Identities=20% Similarity=0.241 Sum_probs=54.4
Q ss_pred HHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHh
Q 005719 43 LRACQYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMP-----DMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGIT 116 (681)
Q Consensus 43 Le~~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MP-----dmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~ 116 (681)
++..++.|. .+.+..++..+.. ..+|.|+++-.-. ....+++++.+....++|||+...-.+.+.+.+++.
T Consensus 106 l~~~g~~v~~~v~~~~~a~~~~~---~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~ 182 (332)
T 2z6i_A 106 FHEAGIIVIPVVPSVALAKRMEK---IGADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGFM 182 (332)
T ss_dssp HHHTTCEEEEEESSHHHHHHHHH---TTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH
T ss_pred HHHcCCeEEEEeCCHHHHHHHHH---cCCCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH
Confidence 444466555 3556666554443 2478888863211 234678888886666899999888888999999999
Q ss_pred cCCcEEEe
Q 005719 117 HGACDYLL 124 (681)
Q Consensus 117 ~GA~DYLl 124 (681)
.||+...+
T Consensus 183 ~GAdgV~v 190 (332)
T 2z6i_A 183 LGAEAVQV 190 (332)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEe
Confidence 99988754
No 209
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=44.34 E-value=1.7e+02 Score=29.48 Aligned_cols=100 Identities=13% Similarity=0.189 Sum_probs=53.4
Q ss_pred cEEEEE-eCCHHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005719 24 MRVLAV-DDDPTCLKVLENFLRACQYEVTVTN--QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVI 100 (681)
Q Consensus 24 mRVLIV-DDD~~~r~iL~~~Le~~gy~Vt~as--~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVI 100 (681)
++++++ .+++..+..+++++.. .-.|.... ...+..+.+. ..|++++.- -|+ ++|.. ...+|||
T Consensus 231 ~~lv~~~g~~~~~~~~l~~~~~~-~~~v~~~g~~g~~~~~~~~~----~ad~~v~~S-----~g~-~lEA~--a~G~PvI 297 (376)
T 1v4v_A 231 LTFVYPVHLNPVVREAVFPVLKG-VRNFVLLDPLEYGSMAALMR----ASLLLVTDS-----GGL-QEEGA--ALGVPVV 297 (376)
T ss_dssp SEEEEECCSCHHHHHHHHHHHTT-CTTEEEECCCCHHHHHHHHH----TEEEEEESC-----HHH-HHHHH--HTTCCEE
T ss_pred eEEEEECCCCHHHHHHHHHHhcc-CCCEEEECCCCHHHHHHHHH----hCcEEEECC-----cCH-HHHHH--HcCCCEE
Confidence 455554 5455445555554422 12454442 2223333333 257776642 244 44554 3578999
Q ss_pred EEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 101 MLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 101 mLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
+.........+ ++.| ..++.. .+.++|.+.+..++.
T Consensus 298 ~~~~~~~~~~~---~~~g-~g~lv~-~d~~~la~~i~~ll~ 333 (376)
T 1v4v_A 298 VLRNVTERPEG---LKAG-ILKLAG-TDPEGVYRVVKGLLE 333 (376)
T ss_dssp ECSSSCSCHHH---HHHT-SEEECC-SCHHHHHHHHHHHHT
T ss_pred eccCCCcchhh---hcCC-ceEECC-CCHHHHHHHHHHHHh
Confidence 76433333332 4455 467764 489999999888874
No 210
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=44.28 E-value=95 Score=30.51 Aligned_cols=68 Identities=12% Similarity=0.122 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCCCceEEE-EeCCCCC---CCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 56 AVTALKMLRENRNNFDLVI-SDVHMPD---MDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 56 a~eALe~L~e~~~~pDLVL-lDV~MPd---mDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
..+..+.+.+. .++.|+ .++.-.+ .-.+++++.+....++|||+...-...+.+.++++.||+.+++-
T Consensus 158 ~~e~~~~~~~~--G~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 158 LRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp HHHHHHHHHHT--TCSEEEEEETTTTTTCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHc--CCCEEEEEeecCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 34544444432 356555 4443211 12378898887777899999998888899999999999998664
No 211
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=43.95 E-value=1.1e+02 Score=30.59 Aligned_cols=58 Identities=17% Similarity=0.352 Sum_probs=41.8
Q ss_pred HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEE------eCCCChHHHHHHHHHHHHH
Q 005719 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYL------LKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 85 ~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYL------lKPvs~eEL~~i~q~Vlrr 142 (681)
+++++.++...++|||....-.+.+.+.+++..||+... ..|.-..++++-+...+..
T Consensus 230 ~~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~~l~~~~~~ 293 (311)
T 1ep3_A 230 LKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELMDQ 293 (311)
T ss_dssp HHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHHHHHHHHHH
Confidence 467777766668999988888889999999999988763 3455455555555555443
No 212
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=43.82 E-value=14 Score=38.27 Aligned_cols=92 Identities=24% Similarity=0.321 Sum_probs=59.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCC-CcEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMD-LPVIML 102 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~d-lPVImL 102 (681)
|||.||-......+.+.++|++.|++|.......+.+ ..+|+||+ -+.||. +|+..+...+ +|||-+
T Consensus 30 mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~-------~~~DlvIv----lGGDGT-~L~aa~~~~~~~PilGI 97 (278)
T 1z0s_A 30 MRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEEL-------ENFDFIVS----VGGDGT-ILRILQKLKRCPPIFGI 97 (278)
T ss_dssp CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGG-------GGSSEEEE----EECHHH-HHHHHTTCSSCCCEEEE
T ss_pred eEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccccccc-------CCCCEEEE----ECCCHH-HHHHHHHhCCCCcEEEE
Confidence 7888884322116778888998899998765432222 13788887 367884 3333332222 899887
Q ss_pred EcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 103 SAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 103 Sa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
.. |-..||. ++..+++...+..+++
T Consensus 98 N~-------------G~lGFLt-~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 98 NT-------------GRVGLLT-HASPENFEVELKKAVE 122 (278)
T ss_dssp EC-------------SSSCTTC-CBBTTBCHHHHHHHHH
T ss_pred CC-------------CCCcccc-ccCHHHHHHHHHHHHh
Confidence 64 4455665 5777888888888875
No 213
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=42.98 E-value=2.3e+02 Score=28.94 Aligned_cols=106 Identities=21% Similarity=0.248 Sum_probs=60.6
Q ss_pred CcEEEEEeCC----HHHHHHHHHHHHhCC--CeEEEECC-----HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 005719 23 GMRVLAVDDD----PTCLKVLENFLRACQ--YEVTVTNQ-----AVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHV 91 (681)
Q Consensus 23 GmRVLIVDDD----~~~r~iL~~~Le~~g--y~Vt~as~-----a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I 91 (681)
..+++|+.+. +.....++++.+..+ -.|..... ..+..+.+.. .|++++--. .+.-|..++|.+
T Consensus 262 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~----ad~~v~ps~-~E~~~~~~lEAm 336 (416)
T 2x6q_A 262 GVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRA----SDVILQMSI-REGFGLTVTEAM 336 (416)
T ss_dssp TCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHH----CSEEEECCS-SCSSCHHHHHHH
T ss_pred CeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHh----CCEEEECCC-cCCCccHHHHHH
Confidence 3566666554 233444444444433 24444431 2233344432 466665332 234466677766
Q ss_pred hccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 92 GLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 92 ~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
. ..+|||+.- .....+.+..|...++.. +.++|.+.+..++.
T Consensus 337 a--~G~PvI~~~----~~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll~ 378 (416)
T 2x6q_A 337 W--KGKPVIGRA----VGGIKFQIVDGETGFLVR--DANEAVEVVLYLLK 378 (416)
T ss_dssp H--TTCCEEEES----CHHHHHHCCBTTTEEEES--SHHHHHHHHHHHHH
T ss_pred H--cCCCEEEcc----CCCChhheecCCCeEEEC--CHHHHHHHHHHHHh
Confidence 3 468988642 234556677788899986 89999999888764
No 214
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=42.62 E-value=34 Score=34.05 Aligned_cols=55 Identities=20% Similarity=0.370 Sum_probs=37.0
Q ss_pred HHHHHHHHhccCCCcEEEEEcCCChH---HHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 005719 84 GFKLLEHVGLEMDLPVIMLSAYGDTK---LVMKGITHGACDYLLKPVRIEELKNIWQHV 139 (681)
Q Consensus 84 G~elLe~I~~~~dlPVImLSa~~d~e---~v~kAl~~GA~DYLlKPvs~eEL~~i~q~V 139 (681)
++++++.++...++||++|... +.. .+.++.+.||+.+++-....+++...+..+
T Consensus 82 ~~~~i~~ir~~~~~Pv~~m~~~-~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~ 139 (262)
T 1rd5_A 82 VLEMLREVTPELSCPVVLLSYY-KPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEA 139 (262)
T ss_dssp HHHHHHHHGGGCSSCEEEECCS-HHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEecC-cHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHH
Confidence 4667778876678999888522 211 123488999999998766666666655543
No 215
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=42.57 E-value=22 Score=39.55 Aligned_cols=51 Identities=24% Similarity=0.306 Sum_probs=41.6
Q ss_pred CCccccchhhHHHHHHHHHHhcCCCCChhhHHhhcCCCCCcHHHHHHhhhhhHhhh
Q 005719 212 KPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFRLYL 267 (681)
Q Consensus 212 k~r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~v~glt~~~v~ShLqkyr~~l 267 (681)
+....||.+=|..|+++|.+-|-| =++|-+.+ ..=|..+|++|.++||..+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGkd---w~~IA~~V--gTKT~~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGRD---FQAISDVI--GNKSVVQVKNFFVNYRRRF 428 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTTC---HHHHHHHH--SSCCHHHHHHHHHHTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcC---HHHHHHHh--CCCCHHHHHHHHHHHHHHh
Confidence 345789999999999999999943 46777774 4569999999999998754
No 216
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=42.41 E-value=2.1e+02 Score=29.24 Aligned_cols=97 Identities=11% Similarity=0.143 Sum_probs=60.9
Q ss_pred HHHHHHhCCC-eEEEE--CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh--ccCCCcEEEEEcCCChHHHHH
Q 005719 39 LENFLRACQY-EVTVT--NQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG--LEMDLPVIMLSAYGDTKLVMK 113 (681)
Q Consensus 39 L~~~Le~~gy-~Vt~a--s~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~--~~~dlPVImLSa~~d~e~v~k 113 (681)
+++.|+. |. .+-.+ ....+.++.+.. ..+|.|++|..-...+--.+...+. .....++++-+...+...+.+
T Consensus 30 ~k~~l~~-G~~~~gl~~~~~~p~~~e~a~~--~GaD~v~lDlEh~~~~~~~~~~~l~a~~~~~~~~~VRv~~~d~~di~~ 106 (287)
T 2v5j_A 30 FKAALKA-GRPQIGLWLGLSSSYSAELLAG--AGFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQ 106 (287)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHT--SCCSEEEEESSSSSCCHHHHHHHHHHHTTSSSEEEEECSSSCHHHHHH
T ss_pred HHHHHHC-CCcEEEEEEECCCHHHHHHHHh--CCCCEEEEeCCCccchHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHH
Confidence 5666654 44 33322 334455565553 3599999998654444434444342 224678888888888889999
Q ss_pred HHhcCCcEEEe-CCCChHHHHHHHHH
Q 005719 114 GITHGACDYLL-KPVRIEELKNIWQH 138 (681)
Q Consensus 114 Al~~GA~DYLl-KPvs~eEL~~i~q~ 138 (681)
+++.|++..++ |--+.++++.+++.
T Consensus 107 ~ld~ga~~ImlP~V~saeea~~~~~~ 132 (287)
T 2v5j_A 107 LLDVGTQTLLVPMVQNADEAREAVRA 132 (287)
T ss_dssp HHHTTCCEEEESCCCSHHHHHHHHHH
T ss_pred HHhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 99999986544 33456787766554
No 217
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=42.34 E-value=1.5e+02 Score=29.73 Aligned_cols=99 Identities=14% Similarity=0.143 Sum_probs=62.9
Q ss_pred HHHHHHhCCCe--EEEEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEEEEcCCChHHHHH
Q 005719 39 LENFLRACQYE--VTVTN-QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL--EMDLPVIMLSAYGDTKLVMK 113 (681)
Q Consensus 39 L~~~Le~~gy~--Vt~as-~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~--~~dlPVImLSa~~d~e~v~k 113 (681)
+++.|..-... +.... ...+.++.+... .+|.|++|+.--..+.-++...+.. ....++++=....+...+.+
T Consensus 6 ~k~~l~~g~~~~g~~~~~~~~p~~~e~a~~~--g~D~vilDlEhav~~~~k~~~~l~a~~~~~~~~~VRVn~~~~~di~~ 83 (261)
T 3qz6_A 6 LKKKLSAGKSVVGTMLNLVYNPDIVRIYAEA--GLDYFIVDCEHAAYTFREINHLVSVAKNAGVSVLVRIPQVDRAHVQR 83 (261)
T ss_dssp HHHHHHTTCCEEEEEESSCCCTTHHHHHHHT--TCSEEEEESSSSCCCHHHHHHHHHHHHHHTCEEEEECSSCCHHHHHH
T ss_pred HHHHHHCCCCEEEEEEecCCCHHHHHHHhcC--CcCEEEEeccCCCCCHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Confidence 45566542222 22223 335555655533 5999999998776666666555532 23466666666677788999
Q ss_pred HHhcCCcEEEe-CCCChHHHHHHHHHH
Q 005719 114 GITHGACDYLL-KPVRIEELKNIWQHV 139 (681)
Q Consensus 114 Al~~GA~DYLl-KPvs~eEL~~i~q~V 139 (681)
++..|++..++ |--+.++++.+++.+
T Consensus 84 ~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 84 LLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp HHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred HHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 99999987654 334677887776654
No 218
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=42.25 E-value=14 Score=35.13 Aligned_cols=89 Identities=16% Similarity=0.208 Sum_probs=52.1
Q ss_pred cE-EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeC--CCCCC--C-H--HHHHHHHhccC
Q 005719 24 MR-VLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDV--HMPDM--D-G--FKLLEHVGLEM 95 (681)
Q Consensus 24 mR-VLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV--~MPdm--D-G--~elLe~I~~~~ 95 (681)
|| |+|||........+.++|++.|++++++......++.+... .+|.||+-- ..+.. + + .++++.+ ..
T Consensus 1 m~mi~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~--~~dglil~gG~~~~~~~~~~~~~~~~i~~~--~~ 76 (195)
T 1qdl_B 1 MDLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERI--DPDRLIISPGPGTPEKREDIGVSLDVIKYL--GK 76 (195)
T ss_dssp CCEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHH--CCSEEEECCCSSCTTSHHHHTTHHHHHHHH--TT
T ss_pred CCEEEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhC--CCCEEEECCCCCChhhhhhhhHHHHHHHHh--cC
Confidence 56 99999776666778889999999988776542223333321 378887721 11221 1 1 2344443 45
Q ss_pred CCcEEEEEcCCChHHHHHHHhcCCc
Q 005719 96 DLPVIMLSAYGDTKLVMKGITHGAC 120 (681)
Q Consensus 96 dlPVImLSa~~d~e~v~kAl~~GA~ 120 (681)
.+||+-++. ....-+...|..
T Consensus 77 ~~PvLGIC~----G~QlL~~~~gg~ 97 (195)
T 1qdl_B 77 RTPILGVCL----GHQAIGYAFGAK 97 (195)
T ss_dssp TSCEEEETH----HHHHHHHHTTCE
T ss_pred CCcEEEEeh----HHHHHHHHhCCE
Confidence 789988874 333334445553
No 219
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=42.18 E-value=93 Score=29.69 Aligned_cols=86 Identities=15% Similarity=0.152 Sum_probs=54.6
Q ss_pred HHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCC-----CCCC--C--HHHHHHHHhccCCCcEEEEEcC
Q 005719 37 KVLENFLRAC-QYEVT-VTNQAVTALKMLRENRNNFDLVISDVH-----MPDM--D--GFKLLEHVGLEMDLPVIMLSAY 105 (681)
Q Consensus 37 ~iL~~~Le~~-gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~-----MPdm--D--G~elLe~I~~~~dlPVImLSa~ 105 (681)
+.++.+-+.+ +..+. .+.+..++.++.. ...|+|.+-.. ..+. . ++++++.+....++|||+...-
T Consensus 108 ~~i~~~~~~~~~~~v~~~~~t~~e~~~~~~---~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GGI 184 (223)
T 1y0e_A 108 ELVSYIRTHAPNVEIMADIATVEEAKNAAR---LGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNV 184 (223)
T ss_dssp HHHHHHHHHCTTSEEEEECSSHHHHHHHHH---TTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESSC
T ss_pred HHHHHHHHhCCCceEEecCCCHHHHHHHHH---cCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecCC
Confidence 3344333333 44443 3456677766543 23688765321 1111 2 4567777765568999998888
Q ss_pred CChHHHHHHHhcCCcEEEeC
Q 005719 106 GDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 106 ~d~e~v~kAl~~GA~DYLlK 125 (681)
.+.+.+.++++.||+.++.-
T Consensus 185 ~~~~~~~~~~~~Gad~v~vG 204 (223)
T 1y0e_A 185 ITPDMYKRVMDLGVHCSVVG 204 (223)
T ss_dssp CSHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHcCCCEEEEC
Confidence 78999999999999988764
No 220
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=41.65 E-value=1.7e+02 Score=31.91 Aligned_cols=87 Identities=14% Similarity=0.161 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC-----------CCCHHHHHHHHh---ccCCC
Q 005719 35 CLKVLENFLRAC-QYEVT--VTNQAVTALKMLRENRNNFDLVISDVHMP-----------DMDGFKLLEHVG---LEMDL 97 (681)
Q Consensus 35 ~r~iL~~~Le~~-gy~Vt--~as~a~eALe~L~e~~~~pDLVLlDV~MP-----------dmDG~elLe~I~---~~~dl 97 (681)
..+.++.+-+.+ +..|. .+.+..+|..+.. ..+|.|.+...-- +...+.++..+. ...++
T Consensus 265 ~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~---~G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~i 341 (494)
T 1vrd_A 265 VIETLEMIKADYPDLPVVAGNVATPEGTEALIK---AGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARKYDV 341 (494)
T ss_dssp HHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHH---TTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHH---cCCCEEEEcCCCCccccccccCCCCccHHHHHHHHHHHHhhcCC
Confidence 445555554544 44443 3456666655443 2478888744210 123344454442 23579
Q ss_pred cEEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 98 PVIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 98 PVImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
|||.-..-.+...+.+++..||+...+
T Consensus 342 pvia~GGI~~~~di~kala~GAd~V~i 368 (494)
T 1vrd_A 342 PIIADGGIRYSGDIVKALAAGAESVMV 368 (494)
T ss_dssp CEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 999998888999999999999988764
No 221
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=41.60 E-value=94 Score=29.23 Aligned_cols=111 Identities=18% Similarity=0.258 Sum_probs=65.6
Q ss_pred cEEEEE------eCCHHHHHHHHHHHHhCCCeEEEECCH-------------------HHHHHHHHhcCCCceEEEEeCC
Q 005719 24 MRVLAV------DDDPTCLKVLENFLRACQYEVTVTNQA-------------------VTALKMLRENRNNFDLVISDVH 78 (681)
Q Consensus 24 mRVLIV------DDD~~~r~iL~~~Le~~gy~Vt~as~a-------------------~eALe~L~e~~~~pDLVLlDV~ 78 (681)
|||.+. +.+......+.+.|++.| .|....-+ ...++.++ ..|+||..+.
T Consensus 3 mkIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~----~aD~vvA~l~ 77 (152)
T 4fyk_A 3 RSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQ----QADVVVAEVT 77 (152)
T ss_dssp CEEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHH----HCSEEEEECS
T ss_pred ceEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHH----HCCEEEEeCC
Confidence 456555 344456677888888877 55311111 11233333 3699999887
Q ss_pred CCC-CCHHHHHHHHhccCCCcEEEEEcCC---ChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 79 MPD-MDGFKLLEHVGLEMDLPVIMLSAYG---DTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 79 MPd-mDG~elLe~I~~~~dlPVImLSa~~---d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
-|+ ..++|+--.. ....||+.+.... ......++...| ..|..+.+..++|..++...+..
T Consensus 78 ~~d~Gt~~EiG~A~--algkPV~~l~~~~~~~~ls~mi~G~~~~-~~~~~~~Y~~~el~~il~~f~~~ 142 (152)
T 4fyk_A 78 QPSLGVGYELGRAV--ALGKPILCLFRPQSGRVLSAMIRGAADG-SRFQVWDYAEGEVETMLDRYFEA 142 (152)
T ss_dssp SCCHHHHHHHHHHH--HTTCCEEEEECGGGSCCCCHHHHHHCCS-SSEEEEECCTTCHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHH--HcCCeEEEEEeCCccchhHHHHcCCCCC-CeEEEEEecHHHHHHHHHHHHHh
Confidence 554 2345554333 3578999987643 334444454433 45888888889999888877643
No 222
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=41.57 E-value=1e+02 Score=33.06 Aligned_cols=78 Identities=17% Similarity=0.104 Sum_probs=49.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe---EEE-ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH-hccCCCc
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYE---VTV-TNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHV-GLEMDLP 98 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~---Vt~-as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I-~~~~dlP 98 (681)
-+|..||-++...+.+++-++..+.+ +.+ ..++.+.+.. .....||+|++|. ++.. .++++.+ ..-..--
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~--~~~~~fD~V~lDP--~g~~-~~~l~~a~~~Lk~gG 152 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRK--EWGFGFDYVDLDP--FGTP-VPFIESVALSMKRGG 152 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHS--CCSSCEEEEEECC--SSCC-HHHHHHHHHHEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHH--hhCCCCcEEEECC--CcCH-HHHHHHHHHHhCCCC
Confidence 47999999999999999999987763 554 3455554430 2234699999998 3321 2455543 2111222
Q ss_pred EEEEEcCC
Q 005719 99 VIMLSAYG 106 (681)
Q Consensus 99 VImLSa~~ 106 (681)
+|+++..+
T Consensus 153 ll~~t~t~ 160 (392)
T 3axs_A 153 ILSLTATD 160 (392)
T ss_dssp EEEEEECC
T ss_pred EEEEEecc
Confidence 67776643
No 223
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=41.40 E-value=30 Score=35.50 Aligned_cols=76 Identities=14% Similarity=0.158 Sum_probs=48.5
Q ss_pred CcEEEEEeC-----CHHHHHHHHHHHHhCC-CeEEEECCHH-----HHHHHHHhcCCCceEEEEeCCCCCCCHH--HHH-
Q 005719 23 GMRVLAVDD-----DPTCLKVLENFLRACQ-YEVTVTNQAV-----TALKMLRENRNNFDLVISDVHMPDMDGF--KLL- 88 (681)
Q Consensus 23 GmRVLIVDD-----D~~~r~iL~~~Le~~g-y~Vt~as~a~-----eALe~L~e~~~~pDLVLlDV~MPdmDG~--elL- 88 (681)
-+|||||.. -+.....|.++|++.| |+|+++.+.. +.+ .+.-..+|+||++..+...+.- +.+
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f---~~~L~~~D~vV~~~~~~~l~~~~~~~l~ 80 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGF---VLDFSPYQLVVLDYNGDSWPEETNRRFL 80 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTC---CCCCTTCSEEEECCCSSCCCHHHHHHHH
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHH---hhhhhcCCEEEEeCCCCcCCHHHHHHHH
Confidence 479999975 3666788999999888 9999887631 222 1122469999988865444322 222
Q ss_pred HHHhccCCCcEEEEE
Q 005719 89 EHVGLEMDLPVIMLS 103 (681)
Q Consensus 89 e~I~~~~dlPVImLS 103 (681)
+.++ ....+|++-
T Consensus 81 ~yV~--~Ggglv~~H 93 (281)
T 4e5v_A 81 EYVQ--NGGGVVIYH 93 (281)
T ss_dssp HHHH--TTCEEEEEG
T ss_pred HHHH--cCCCEEEEe
Confidence 2222 356777764
No 224
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=41.13 E-value=2.4e+02 Score=28.30 Aligned_cols=98 Identities=11% Similarity=0.126 Sum_probs=60.1
Q ss_pred HHHHHHhCCC---eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh--ccCCCcEEEEEcCCChHHHHH
Q 005719 39 LENFLRACQY---EVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG--LEMDLPVIMLSAYGDTKLVMK 113 (681)
Q Consensus 39 L~~~Le~~gy---~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~--~~~dlPVImLSa~~d~e~v~k 113 (681)
+++.|+. |. .+.......+.++.+.. ..+|.|++|..-.-.+--.+...+. .....++++=+...+...+.+
T Consensus 9 ~k~~l~~-g~~~~g~~~~~~~p~~~e~a~~--~GaD~v~lDlE~~~~~~~~~~~~~~a~~~~~~~~~VRv~~~~~~~i~~ 85 (267)
T 2vws_A 9 FKERLRK-GEVQIGLWLSSTTAYMAEIAAT--SGYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQ 85 (267)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHT--TCCSEEEEETTTSCCCHHHHHHHHHHHTTSSSEEEEECSSCCHHHHHH
T ss_pred HHHHHHC-CCCEEEEEEeCCCHHHHHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHH
Confidence 5555654 43 22223334455555553 3599999998654444444444442 224577888877778888999
Q ss_pred HHhcCCcEEEe-CCCChHHHHHHHHHH
Q 005719 114 GITHGACDYLL-KPVRIEELKNIWQHV 139 (681)
Q Consensus 114 Al~~GA~DYLl-KPvs~eEL~~i~q~V 139 (681)
+++.|++..++ |--+.++++.+++.+
T Consensus 86 ~l~~g~~~I~~P~V~s~ee~~~~~~~~ 112 (267)
T 2vws_A 86 VLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_dssp HHHTTCCEEEECCCCSHHHHHHHHHHT
T ss_pred HHHhCCCEEEeCCCCCHHHHHHHHHHH
Confidence 99999986443 334577877665543
No 225
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=41.10 E-value=1.7e+02 Score=28.28 Aligned_cols=77 Identities=18% Similarity=0.218 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCCce-EEEEeCCCCCC-C--HHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC------C
Q 005719 57 VTALKMLRENRNNFD-LVISDVHMPDM-D--GFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK------P 126 (681)
Q Consensus 57 ~eALe~L~e~~~~pD-LVLlDV~MPdm-D--G~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK------P 126 (681)
.+..+.+.+. .++ +++.++.-.++ . .+++++.+....++|||+...-...+.+.++++.||+..++- |
T Consensus 155 ~e~~~~~~~~--G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~ 232 (252)
T 1ka9_F 155 VEWAVKGVEL--GAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGE 232 (252)
T ss_dssp HHHHHHHHHH--TCCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS
T ss_pred HHHHHHHHHc--CCCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 4444444332 255 55565542221 2 388888887667899999988888889999999999998653 5
Q ss_pred CChHHHHHH
Q 005719 127 VRIEELKNI 135 (681)
Q Consensus 127 vs~eEL~~i 135 (681)
++.++++..
T Consensus 233 ~~~~~~~~~ 241 (252)
T 1ka9_F 233 IPIPKLKRY 241 (252)
T ss_dssp SCHHHHHHH
T ss_pred CCHHHHHHH
Confidence 566665543
No 226
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=40.56 E-value=54 Score=24.58 Aligned_cols=45 Identities=29% Similarity=0.299 Sum_probs=34.7
Q ss_pred ccccchhhHHHHHHHHHHhcCCCCChhhHHhhcCCCCCcHHHHHHhhhh
Q 005719 214 RVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQK 262 (681)
Q Consensus 214 r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~v~glt~~~v~ShLqk 262 (681)
|-.||+|=..+++++|++.|.. -=+.|.+.| +|-|..+++.|-++
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~--~W~~Ia~~~--~~Rt~~qcr~Rw~~ 47 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTD--DWKVIANYL--PNRTDVQCQHRWQK 47 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSS--CHHHHHHTS--TTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCC--CHHHHHHHc--CCCCHHHHHHHHHH
Confidence 4579999999999999999952 235666665 68999999885443
No 227
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=40.19 E-value=99 Score=30.36 Aligned_cols=70 Identities=11% Similarity=0.151 Sum_probs=47.2
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCC
Q 005719 55 QAVTALKMLRENRNNFD-LVISDVHMPDM---DGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126 (681)
Q Consensus 55 ~a~eALe~L~e~~~~pD-LVLlDV~MPdm---DG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKP 126 (681)
+..+..+.+.+. ..| |.+.|....+. .-+++++.+.....+|||+.....+.+.+.+++..||+..++--
T Consensus 31 ~~~~~a~~~~~~--Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~ 104 (266)
T 2w6r_A 31 LLRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAAS 104 (266)
T ss_dssp EHHHHHHHHHHH--TCSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECCC
T ss_pred CHHHHHHHHHHC--CCCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhhH
Confidence 344444444432 244 44466543221 12788888877788999998777788889999999999887753
No 228
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=39.98 E-value=64 Score=30.57 Aligned_cols=62 Identities=19% Similarity=0.390 Sum_probs=44.0
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhc--CCCceEEEEeCCCC
Q 005719 19 KFPIGMRVLAVDDDPTCLKVLENFLRACQYE--VT-VTNQAVTALKMLREN--RNNFDLVISDVHMP 80 (681)
Q Consensus 19 ~fP~GmRVLIVDDD~~~r~iL~~~Le~~gy~--Vt-~as~a~eALe~L~e~--~~~pDLVLlDV~MP 80 (681)
.++.+.+|..||-++...+..++.++..+.. |. ...++.+.+..+... ...||+|++|....
T Consensus 79 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~ 145 (221)
T 3u81_A 79 LLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKD 145 (221)
T ss_dssp TSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGG
T ss_pred hCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcc
Confidence 3456779999999999999999998877652 54 456766655544210 13699999997443
No 229
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=39.92 E-value=30 Score=30.10 Aligned_cols=50 Identities=24% Similarity=0.387 Sum_probs=38.8
Q ss_pred cccchhhHHHHHHHHHHhcCCCCChh---hHHhhcCCCCCcHHHHHHhhhhhHhhhc
Q 005719 215 VVWTPELHRKFVGAVNQLGVDKAVPK---KILDLMNVEGLTRENVASHLQKFRLYLK 268 (681)
Q Consensus 215 ~~Wt~eLh~~F~~av~~lG~~ka~Pk---~il~~m~v~glt~~~v~ShLqkyr~~l~ 268 (681)
-.||.|=...|++|+.++|.+ .|. +|.+.+ ||-|.++|+.|-+++..-++
T Consensus 9 ~~WT~eEd~~L~~al~~~~~~--~~~rW~~IA~~v--pGRT~~q~k~ry~~l~~dv~ 61 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYDKD--TPDRWANVARAV--EGRTPEEVKKHYEILVEDIK 61 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSCTT--CTTHHHHHHHHS--TTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCC--CCchHHHHHHHc--CCCCHHHHHHHHHHHHHHHH
Confidence 369999999999999999854 454 455555 79999999998777655443
No 230
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Probab=39.25 E-value=48 Score=36.20 Aligned_cols=105 Identities=14% Similarity=0.188 Sum_probs=64.2
Q ss_pred eCCHHHHHHHHHHHHhCCC--eEEEEC----------------------------CHHHHHHHHHhcCCCceEEEEeCCC
Q 005719 30 DDDPTCLKVLENFLRACQY--EVTVTN----------------------------QAVTALKMLRENRNNFDLVISDVHM 79 (681)
Q Consensus 30 DDD~~~r~iL~~~Le~~gy--~Vt~as----------------------------~a~eALe~L~e~~~~pDLVLlDV~M 79 (681)
+++....+.+++.++..|| +|...- +..++++.+...-..|+++.++==+
T Consensus 219 ~~~~~~l~~i~~ai~~~G~~g~v~l~vD~aase~~~n~~y~~~~~~~~~~~~~~~t~~eai~~~~~~l~~y~i~~iEdPl 298 (436)
T 2al1_A 219 QTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPF 298 (436)
T ss_dssp SCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTCTTCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCS
T ss_pred cCHHHHHHHHHHHHHHcCCCcceEEEEechhhhhccCCceEEecccccccccccCCHHHHHHHHHHHHHhCCcEEEECCC
Confidence 5566777888888877776 443221 3466665543221237888887655
Q ss_pred CCCCHHHHHHHHhccCCCcEEEEEcCC---ChHHHHHHHhcCCcEE-EeCCCChHHHHHHHH
Q 005719 80 PDMDGFKLLEHVGLEMDLPVIMLSAYG---DTKLVMKGITHGACDY-LLKPVRIEELKNIWQ 137 (681)
Q Consensus 80 PdmDG~elLe~I~~~~dlPVImLSa~~---d~e~v~kAl~~GA~DY-LlKPvs~eEL~~i~q 137 (681)
+..| ++-.+.|+....+||+ ..+. +...+.++++.||+++ ++|+-...-|.+.++
T Consensus 299 ~~dD-~~g~~~l~~~~~ipI~--gDE~~vt~~~~~~~~i~~~a~d~i~ikv~qiGGitea~~ 357 (436)
T 2al1_A 299 AEDD-WEAWSHFFKTAGIQIV--ADDLTVTNPKRIATAIEKKAADALLLKVNQIGTLSESIK 357 (436)
T ss_dssp CTTC-HHHHHHHHTTCCSEEE--ESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHH
T ss_pred CCcC-HHHHHHHHhcCCCeEE--ECCcccCCHHHHHHHHHhCCCCEEEechhhcCCHHHHHH
Confidence 5444 5556666555567763 4442 5788899999998776 567754444444333
No 231
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=39.24 E-value=2.3e+02 Score=27.43 Aligned_cols=68 Identities=12% Similarity=0.170 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCCce-EEEEeCCCCC-CC--HHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 56 AVTALKMLRENRNNFD-LVISDVHMPD-MD--GFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 56 a~eALe~L~e~~~~pD-LVLlDV~MPd-mD--G~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
..+.++.+.+. .++ +++.++.-.+ .. .+++++++....++|||+...-...+.+.++++.||+.+++-
T Consensus 153 ~~e~~~~~~~~--G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vG 224 (253)
T 1thf_D 153 LRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAA 224 (253)
T ss_dssp HHHHHHHHHHT--TCSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHC--CCCEEEEEeccCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCChHHHHH
Confidence 34544444432 366 4556654222 12 378888887667899999888888899999999999988653
No 232
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=39.20 E-value=59 Score=35.29 Aligned_cols=53 Identities=23% Similarity=0.337 Sum_probs=28.4
Q ss_pred CcEEEEEeCCH---HHHHHHHHHHHhCCCeEEEEC---CH----HHHHHHHHhcCCCceEEEEeC
Q 005719 23 GMRVLAVDDDP---TCLKVLENFLRACQYEVTVTN---QA----VTALKMLRENRNNFDLVISDV 77 (681)
Q Consensus 23 GmRVLIVDDD~---~~r~iL~~~Le~~gy~Vt~as---~a----~eALe~L~e~~~~pDLVLlDV 77 (681)
|.||++||-|+ .....+...-...+..+.... +. .++++.+.. ..+|+||+|.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~--~~~D~VIIDT 191 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKL--KFYDVLLVDT 191 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHH--TTCSEEEEEC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHh--CCCCEEEEEC
Confidence 67788888775 222333333333455554432 22 223444332 3589999998
No 233
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=38.26 E-value=1.8e+02 Score=24.58 Aligned_cols=26 Identities=12% Similarity=-0.092 Sum_probs=11.8
Q ss_pred cEEEEEcCCChHHHHHHHhcCCcEEEeCC
Q 005719 98 PVIMLSAYGDTKLVMKGITHGACDYLLKP 126 (681)
Q Consensus 98 PVImLSa~~d~e~v~kAl~~GA~DYLlKP 126 (681)
.||+.+.... ......+.|++ ++.-|
T Consensus 97 ~ii~~~~~~~--~~~~l~~~g~~-~v~~p 122 (140)
T 1lss_A 97 KTIARISEIE--YKDVFERLGVD-VVVSP 122 (140)
T ss_dssp CEEEECSSTT--HHHHHHHTTCS-EEECH
T ss_pred EEEEEecCHh--HHHHHHHcCCC-EEECH
Confidence 4555443332 23334456764 44444
No 234
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=37.94 E-value=1.3e+02 Score=28.76 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=46.9
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHhc------------C-CCceEEEEeCCCCCCC
Q 005719 20 FPIGMRVLAVDDDPTCLKVLENFLRACQYE--VT-VTNQAVTALKMLREN------------R-NNFDLVISDVHMPDMD 83 (681)
Q Consensus 20 fP~GmRVLIVDDD~~~r~iL~~~Le~~gy~--Vt-~as~a~eALe~L~e~------------~-~~pDLVLlDV~MPdmD 83 (681)
+|.+.+|..||-++...+..++.++..++. |. ...++.+.+..+... . ..||+|+++...+.
T Consensus 82 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~-- 159 (239)
T 2hnk_A 82 LPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKEN-- 159 (239)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGG--
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHH--
Confidence 455679999999999999999999887752 44 456666655544321 1 46999999964332
Q ss_pred HHHHHHHH
Q 005719 84 GFKLLEHV 91 (681)
Q Consensus 84 G~elLe~I 91 (681)
-.++++.+
T Consensus 160 ~~~~l~~~ 167 (239)
T 2hnk_A 160 YPNYYPLI 167 (239)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 23445544
No 235
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=37.84 E-value=2.6e+02 Score=28.90 Aligned_cols=87 Identities=20% Similarity=0.062 Sum_probs=57.1
Q ss_pred HHHHHHHHHhCCCeEEE--E---CCHHHHHHHHHhcCCCceEEEEeCC---------------------CCCCCHHHHHH
Q 005719 36 LKVLENFLRACQYEVTV--T---NQAVTALKMLRENRNNFDLVISDVH---------------------MPDMDGFKLLE 89 (681)
Q Consensus 36 r~iL~~~Le~~gy~Vt~--a---s~a~eALe~L~e~~~~pDLVLlDV~---------------------MPdmDG~elLe 89 (681)
.+.++.+-+..+..|.+ + .+..+|..+... ..|.|++.-+ .-+....+.++
T Consensus 167 ~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~---Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~ 243 (349)
T 1p0k_A 167 LKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEA---GAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLA 243 (349)
T ss_dssp HHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHH---TCSEEEEEC---------------CCGGGGTTCSCCHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHc---CCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHH
Confidence 44555554455555554 2 455565554432 3788777522 11245667777
Q ss_pred HHhcc-CCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 90 HVGLE-MDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 90 ~I~~~-~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
.+... .++|||....-.+.+.+.+++..||+.+.+-
T Consensus 244 ~v~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG 280 (349)
T 1p0k_A 244 EIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMA 280 (349)
T ss_dssp HHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 77433 4799999999999999999999999988665
No 236
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=37.79 E-value=1.7e+02 Score=27.80 Aligned_cols=67 Identities=19% Similarity=0.220 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCCceEEE-EeCCCCCC---CHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 56 AVTALKMLRENRNNFDLVI-SDVHMPDM---DGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 56 a~eALe~L~e~~~~pDLVL-lDV~MPdm---DG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
..+.++.+.+. ..|.|+ ..+.-.+. -.++.++.+....++|||+...-...+.+.++++.||+.+++
T Consensus 156 ~~e~~~~~~~~--G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~v 226 (253)
T 1h5y_A 156 AVKWAKEVEEL--GAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLA 226 (253)
T ss_dssp HHHHHHHHHHH--TCSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhC--CCCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCcHHHH
Confidence 44544444433 267665 44442211 136777777655689999888777778888999999998864
No 237
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=37.55 E-value=73 Score=32.43 Aligned_cols=65 Identities=22% Similarity=0.277 Sum_probs=44.2
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 70 FDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 70 pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
.|++++-.. .+.-|..+++.+. ..+|||+.-... ..+.+..|-..++..|-+.++|.+.+..++.
T Consensus 285 adv~v~ps~-~e~~~~~~~EAma--~G~PvI~~~~~~----~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~ 349 (394)
T 2jjm_A 285 SDLMLLLSE-KESFGLVLLEAMA--CGVPCIGTRVGG----IPEVIQHGDTGYLCEVGDTTGVADQAIQLLK 349 (394)
T ss_dssp CSEEEECCS-CCSCCHHHHHHHH--TTCCEEEECCTT----STTTCCBTTTEEEECTTCHHHHHHHHHHHHH
T ss_pred CCEEEeccc-cCCCchHHHHHHh--cCCCEEEecCCC----hHHHhhcCCceEEeCCCCHHHHHHHHHHHHc
Confidence 577776433 3444667777663 468988654322 2234566778999999999999999988875
No 238
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=37.52 E-value=65 Score=30.69 Aligned_cols=92 Identities=14% Similarity=0.105 Sum_probs=58.0
Q ss_pred HHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHhccC--CCcEEEEEcCCChHHHHHHHh
Q 005719 41 NFLRACQYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMP-DMDGFKLLEHVGLEM--DLPVIMLSAYGDTKLVMKGIT 116 (681)
Q Consensus 41 ~~Le~~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MP-dmDG~elLe~I~~~~--dlPVImLSa~~d~e~v~kAl~ 116 (681)
+..+..|..+. -+.+..++.+... ..+|+|++ .| +..|++.++.+.... ++||++..+-. .+.+.++++
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~---~G~d~v~v---~~t~~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~ 167 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALE---AGAQALKI---FPSSAFGPQYIKALKAVLPSDIAVFAVGGVT-PENLAQWID 167 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHH---TTCSEEEE---TTHHHHCHHHHHHHHTTSCTTCEEEEESSCC-TTTHHHHHH
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHH---CCCCEEEE---ecCCCCCHHHHHHHHHhccCCCeEEEeCCCC-HHHHHHHHH
Confidence 44555565532 3677778766654 34899886 22 123567777775443 48998887765 677888889
Q ss_pred cCCcEEEeCC-C-Ch----HHHHHHHHHH
Q 005719 117 HGACDYLLKP-V-RI----EELKNIWQHV 139 (681)
Q Consensus 117 ~GA~DYLlKP-v-s~----eEL~~i~q~V 139 (681)
.||+.+..-- + .. ++....++.+
T Consensus 168 ~Ga~gv~vGsai~~~~~~~~d~~~~~~~l 196 (212)
T 2v82_A 168 AGCAGAGLGSDLYRAGQSVERTAQQAAAF 196 (212)
T ss_dssp HTCSEEEECTTTCCTTCCHHHHHHHHHHH
T ss_pred cCCCEEEEChHHhCCCCCHHHHHHHHHHH
Confidence 9999987542 2 22 4555555544
No 239
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=37.41 E-value=66 Score=33.45 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=55.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe----------EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYE----------VTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL 93 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~----------Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~ 93 (681)
.+++||-+.+.....|++++++.|.. |.......+....+. ..|++++--..-+.-|..++|..
T Consensus 226 ~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~----~aDv~vl~ss~~e~gg~~~lEAm-- 299 (374)
T 2xci_A 226 LKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYP----VGKIAIVGGTFVNIGGHNLLEPT-- 299 (374)
T ss_dssp CEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGG----GEEEEEECSSSSSSCCCCCHHHH--
T ss_pred cEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHH----hCCEEEECCcccCCCCcCHHHHH--
Confidence 56666666655444556666555533 222221122222222 25776652211111233355554
Q ss_pred cCCCcEEEEEcCCChHHHHH-HHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 94 EMDLPVIMLSAYGDTKLVMK-GITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 94 ~~dlPVImLSa~~d~e~v~k-Al~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
...+|||.-+.......+.+ ....| ++..+-+.++|.+.+..++..
T Consensus 300 A~G~PVI~~~~~~~~~e~~~~~~~~G---~l~~~~d~~~La~ai~~ll~d 346 (374)
T 2xci_A 300 CWGIPVIYGPYTHKVNDLKEFLEKEG---AGFEVKNETELVTKLTELLSV 346 (374)
T ss_dssp TTTCCEEECSCCTTSHHHHHHHHHTT---CEEECCSHHHHHHHHHHHHHS
T ss_pred HhCCCEEECCCccChHHHHHHHHHCC---CEEEeCCHHHHHHHHHHHHhH
Confidence 35789985222233333333 23444 566667889999999998864
No 240
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=37.14 E-value=1.8e+02 Score=26.01 Aligned_cols=68 Identities=21% Similarity=0.283 Sum_probs=45.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQY--EVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHV 91 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy--~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I 91 (681)
.+|..||-++...+..++.+...+. .+. ...+..+.+..+......||+|++|.-.-..+.-++++.+
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l 138 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKM 138 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHH
Confidence 5899999999999999988877664 344 4556666554443223569999998532233455556655
No 241
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=37.07 E-value=1e+02 Score=28.80 Aligned_cols=112 Identities=14% Similarity=0.205 Sum_probs=62.6
Q ss_pred CCCcEEEEEeCCH-----H-HHHHHHHHHHhCCCeEEEEC---------------C----HHHHHHHHHhcCCCceEEEE
Q 005719 21 PIGMRVLAVDDDP-----T-CLKVLENFLRACQYEVTVTN---------------Q----AVTALKMLRENRNNFDLVIS 75 (681)
Q Consensus 21 P~GmRVLIVDDD~-----~-~r~iL~~~Le~~gy~Vt~as---------------~----a~eALe~L~e~~~~pDLVLl 75 (681)
+..+||.|.-.-. . ..+.+++.|+..| .|..-. . ...-++.++ ..|+||.
T Consensus 9 ~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~----~aD~vva 83 (165)
T 2khz_A 9 QAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQ----QADVVVA 83 (165)
T ss_dssp CCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHH----HCSEEEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHH----hCCEEEE
Confidence 4567899883222 1 3567788888878 663100 1 112234444 2699999
Q ss_pred eCCCCCCC---HHHHHHHHhccCCCcEEEEEcCCC---hHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 76 DVHMPDMD---GFKLLEHVGLEMDLPVIMLSAYGD---TKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 76 DV~MPdmD---G~elLe~I~~~~dlPVImLSa~~d---~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
++. ..| ++|+- .......|||++..... ......+.... ..|-.+.++.++|..++...++.
T Consensus 84 ~~~--~~d~Gt~~EiG--yA~algKPVi~l~~~~~~~~~n~M~~g~~~~-~~~~~~~y~~~el~~~l~~~~~~ 151 (165)
T 2khz_A 84 EVT--QPSLGVGYELG--RAVALGKPILCLFRPQSGRVLSAMIRGAADG-SRFQVWDYAEGEVETMLDRYFEA 151 (165)
T ss_dssp ECS--SCCHHHHHHHH--HHHHTCSSEEEEECTTTTCCCCHHHHHTCCS-SSEEEEECCTTTHHHHHHHHHHT
T ss_pred ECC--CCCCCHHHHHH--HHHHCCCEEEEEEcCCCCCcchhhhcccCcc-ceeEEEecCHHHHHHHHHHHHHh
Confidence 886 333 23333 23446899999976542 11222222221 22444445888998888887754
No 242
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Probab=36.81 E-value=52 Score=35.90 Aligned_cols=105 Identities=11% Similarity=0.243 Sum_probs=63.7
Q ss_pred eCCHHHHHHHHHHHHhCCC--eEEEEC---------------------------CHHHHHHHHHhcCCCceEEEEeCCCC
Q 005719 30 DDDPTCLKVLENFLRACQY--EVTVTN---------------------------QAVTALKMLRENRNNFDLVISDVHMP 80 (681)
Q Consensus 30 DDD~~~r~iL~~~Le~~gy--~Vt~as---------------------------~a~eALe~L~e~~~~pDLVLlDV~MP 80 (681)
+++....+.+++.++..|| +|...- +..++++.+.+.-..++++.++==++
T Consensus 217 ~~~~e~l~~i~~ai~~~G~~g~v~l~vD~a~se~~~~g~y~l~~~~~~~~~~~~t~~e~~~~~~~ll~~y~i~~IEdPl~ 296 (439)
T 2akz_A 217 LENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPTDPSRYITGDQLGALYQDFVRDYPVVSIEDPFD 296 (439)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTSSCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCSC
T ss_pred ccHHHHHHHHHHHHHHcCCccceEEEEechHhhhccCCeeEEeccccccccccCCHHHHHHHHHHHHHhCCCcEEECCCC
Confidence 5567777888888877676 433211 44666555433212377888876555
Q ss_pred CCCHHHHHHHHhccCCCcEEEEEcC---CChHHHHHHHhcCCcEE-EeCCCChHHHHHHHH
Q 005719 81 DMDGFKLLEHVGLEMDLPVIMLSAY---GDTKLVMKGITHGACDY-LLKPVRIEELKNIWQ 137 (681)
Q Consensus 81 dmDG~elLe~I~~~~dlPVImLSa~---~d~e~v~kAl~~GA~DY-LlKPvs~eEL~~i~q 137 (681)
..| ++-.+.|+....+||+ ..+ .+...+.++++.||+++ ++|+-...-|.+.++
T Consensus 297 ~dD-~~g~~~L~~~~~ipI~--gDE~~vt~~~~~~~~i~~~a~d~i~iKv~qiGGitea~~ 354 (439)
T 2akz_A 297 QDD-WAAWSKFTANVGIQIV--GDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQ 354 (439)
T ss_dssp TTC-HHHHHHHHHTCSSEEE--ESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHHH
T ss_pred ccc-HHHHHHHHhCCCCEEE--eCCCccCCHHHHHHHHHhCCCCEEEechhhcCCHHHHHH
Confidence 444 5555666545567763 444 26788899999998765 567755444444443
No 243
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=36.55 E-value=3e+02 Score=27.32 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=38.8
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 70 FDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 70 pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
.|++++.- |.-++|.+. ..+|||+.-..... .+.++.| ..++..+ +.++|.+.+..++.
T Consensus 283 ad~~v~~s------g~~~lEA~a--~G~Pvi~~~~~~~~---~e~v~~g-~g~~v~~-d~~~la~~i~~ll~ 341 (375)
T 3beo_A 283 SYLMLTDS------GGVQEEAPS--LGVPVLVLRDTTER---PEGIEAG-TLKLAGT-DEETIFSLADELLS 341 (375)
T ss_dssp CSEEEECC------HHHHHHHHH--HTCCEEECSSCCSC---HHHHHTT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred CcEEEECC------CChHHHHHh--cCCCEEEecCCCCC---ceeecCC-ceEEcCC-CHHHHHHHHHHHHh
Confidence 57777643 544556543 46898866221222 2346778 7888877 99999999988874
No 244
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=35.91 E-value=1.6e+02 Score=29.61 Aligned_cols=42 Identities=12% Similarity=0.243 Sum_probs=29.6
Q ss_pred CCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 95 MDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 95 ~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
..+|||+.-....... .++.| ..++..| +.++|.+.+..++.
T Consensus 300 ~G~PvI~~~~~~~~~e---~v~~g-~g~lv~~-d~~~la~~i~~ll~ 341 (384)
T 1vgv_A 300 LGKPVLVMRDTTERPE---AVTAG-TVRLVGT-DKQRIVEEVTRLLK 341 (384)
T ss_dssp GTCCEEEESSCCSCHH---HHHHT-SEEEECS-SHHHHHHHHHHHHH
T ss_pred cCCCEEEccCCCCcch---hhhCC-ceEEeCC-CHHHHHHHHHHHHh
Confidence 4689987643233222 35667 8899888 99999999988874
No 245
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=35.56 E-value=1.1e+02 Score=32.40 Aligned_cols=76 Identities=9% Similarity=0.038 Sum_probs=49.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC---------------CCe-EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH
Q 005719 24 MRVLAVDDDPTCLKVLENFLRAC---------------QYE-VT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFK 86 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~---------------gy~-Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~e 86 (681)
.+|+.+|-++...+.+++-++.. +.. +. +..++.+.+..+ ...||+|++|. | ....+
T Consensus 72 ~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~---~~~fD~I~lDP--~-~~~~~ 145 (378)
T 2dul_A 72 EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAER---HRYFHFIDLDP--F-GSPME 145 (378)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS---TTCEEEEEECC--S-SCCHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHhc---cCCCCEEEeCC--C-CCHHH
Confidence 57999999999999999988876 653 44 455666655432 24599999986 3 23345
Q ss_pred HHHHH-hccCCCcEEEEEcC
Q 005719 87 LLEHV-GLEMDLPVIMLSAY 105 (681)
Q Consensus 87 lLe~I-~~~~dlPVImLSa~ 105 (681)
+++.. +....--+|+++..
T Consensus 146 ~l~~a~~~lk~gG~l~vt~t 165 (378)
T 2dul_A 146 FLDTALRSAKRRGILGVTAT 165 (378)
T ss_dssp HHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHhcCCCCEEEEEee
Confidence 55543 22222226666653
No 246
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=35.34 E-value=44 Score=31.82 Aligned_cols=43 Identities=14% Similarity=0.194 Sum_probs=33.4
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEE
Q 005719 25 RVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVIS 75 (681)
Q Consensus 25 RVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLl 75 (681)
+|+|||=-.-+...+...|+++|++++++.+..+. . .+|.||+
T Consensus 4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~l----~----~~D~lil 46 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIERLGYAVTISRDPQVV----L----AADKLFL 46 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHHH----H----HCSEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHCCCEEEEECCHHHH----h----CCCEEEE
Confidence 79999976666678889999999999998876543 2 1687777
No 247
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=35.28 E-value=2.4e+02 Score=28.80 Aligned_cols=88 Identities=13% Similarity=0.075 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC---CCCHHHHHHHH-hcc-CCCcEEEEEcCCC
Q 005719 34 TCLKVLENFLRACQYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMP---DMDGFKLLEHV-GLE-MDLPVIMLSAYGD 107 (681)
Q Consensus 34 ~~r~iL~~~Le~~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MP---dmDG~elLe~I-~~~-~dlPVImLSa~~d 107 (681)
.....+....+..|..+. .+.+..|+...+. ..+|+|=+.-.-. ..| ++....+ ... .++|+|.-++-..
T Consensus 156 ~~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~---~ga~iIGinnr~l~t~~~d-l~~~~~L~~~ip~~~~vIaesGI~t 231 (272)
T 3tsm_A 156 DLAKELEDTAFALGMDALIEVHDEAEMERALK---LSSRLLGVNNRNLRSFEVN-LAVSERLAKMAPSDRLLVGESGIFT 231 (272)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECSHHHHHHHTT---SCCSEEEEECBCTTTCCBC-THHHHHHHHHSCTTSEEEEESSCCS
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHh---cCCCEEEECCCCCccCCCC-hHHHHHHHHhCCCCCcEEEECCCCC
Confidence 344455555666787765 5677777766553 3578886653211 112 3444444 222 3688999999999
Q ss_pred hHHHHHHHhcCCcEEEeC
Q 005719 108 TKLVMKGITHGACDYLLK 125 (681)
Q Consensus 108 ~e~v~kAl~~GA~DYLlK 125 (681)
.+.+.++.++||+.+|+-
T Consensus 232 ~edv~~l~~~Ga~gvLVG 249 (272)
T 3tsm_A 232 HEDCLRLEKSGIGTFLIG 249 (272)
T ss_dssp HHHHHHHHTTTCCEEEEC
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 999999999999999874
No 248
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=35.05 E-value=1.6e+02 Score=28.09 Aligned_cols=70 Identities=14% Similarity=0.133 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHhcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 54 NQAVTALKMLRENRNNFD-LVISDVHMPDM---DGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 54 s~a~eALe~L~e~~~~pD-LVLlDV~MPdm---DG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
.+..+..+.+.+. .+| +.+.|...... ..+++++.++...++|||+.....+.+.+.++++.||+.+.+-
T Consensus 33 ~~~~~~a~~~~~~--G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~ 106 (253)
T 1h5y_A 33 GDPVEMAVRYEEE--GADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVN 106 (253)
T ss_dssp ECHHHHHHHHHHT--TCSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred ccHHHHHHHHHHc--CCCEEEEEeCCccccCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 3555555555543 366 44555433211 2356777776667899998887788888999999998877653
No 249
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=34.91 E-value=61 Score=31.90 Aligned_cols=81 Identities=15% Similarity=0.117 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCCCceEEEEeC---CC-CCC-CHHHHHHHHhccCCCcEE--EEEcCCChHHHHHHHhcCCcEEEeCCC-
Q 005719 56 AVTALKMLRENRNNFDLVISDV---HM-PDM-DGFKLLEHVGLEMDLPVI--MLSAYGDTKLVMKGITHGACDYLLKPV- 127 (681)
Q Consensus 56 a~eALe~L~e~~~~pDLVLlDV---~M-Pdm-DG~elLe~I~~~~dlPVI--mLSa~~d~e~v~kAl~~GA~DYLlKPv- 127 (681)
..++++.+.+. ..|+|=+|+ +. |.. .|+++++.|+...+.|+. +|+. +....+..+.+.||+.+.....
T Consensus 19 l~~~i~~~~~~--Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~-dp~~~i~~~~~aGadgv~vh~e~ 95 (230)
T 1tqj_A 19 LGEEIKAVDEA--GADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIV-EPEKYVEDFAKAGADIISVHVEH 95 (230)
T ss_dssp HHHHHHHHHHT--TCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESS-SGGGTHHHHHHHTCSEEEEECST
T ss_pred HHHHHHHHHHc--CCCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEcc-CHHHHHHHHHHcCCCEEEECccc
Confidence 34455555432 356655555 21 232 367999999765566765 6664 3345678899999999877665
Q ss_pred -ChHHHHHHHHHH
Q 005719 128 -RIEELKNIWQHV 139 (681)
Q Consensus 128 -s~eEL~~i~q~V 139 (681)
..+++...++.+
T Consensus 96 ~~~~~~~~~~~~i 108 (230)
T 1tqj_A 96 NASPHLHRTLCQI 108 (230)
T ss_dssp TTCTTHHHHHHHH
T ss_pred ccchhHHHHHHHH
Confidence 445555555554
No 250
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=34.38 E-value=45 Score=33.31 Aligned_cols=64 Identities=11% Similarity=0.032 Sum_probs=42.9
Q ss_pred ceEEEEeCC---------CCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhc--CCcEEEeCCCChHHHHHHHHH
Q 005719 70 FDLVISDVH---------MPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITH--GACDYLLKPVRIEELKNIWQH 138 (681)
Q Consensus 70 pDLVLlDV~---------MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~--GA~DYLlKPvs~eEL~~i~q~ 138 (681)
.|++++--. ..+.-|..++|.+. ..+|||..-. . ...+.+.. |...++..| +.++|.+.+..
T Consensus 232 adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma--~G~PvI~s~~-~---~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~ 304 (342)
T 2iuy_A 232 AHAVLAMSQAVTGPWGGIWCEPGATVVSEAAV--SGTPVVGTGN-G---CLAEIVPSVGEVVGYGTDF-APDEARRTLAG 304 (342)
T ss_dssp CSEEEECCCCCCCTTCSCCCCCCCHHHHHHHH--TTCCEEECCT-T---THHHHGGGGEEECCSSSCC-CHHHHHHHHHT
T ss_pred CCEEEECCcccccccccccccCccHHHHHHHh--cCCCEEEcCC-C---ChHHHhcccCCCceEEcCC-CHHHHHHHHHH
Confidence 477666433 13445677777764 5688885432 2 34455667 778899999 99999998877
Q ss_pred HH
Q 005719 139 VI 140 (681)
Q Consensus 139 Vl 140 (681)
++
T Consensus 305 l~ 306 (342)
T 2iuy_A 305 LP 306 (342)
T ss_dssp SC
T ss_pred HH
Confidence 64
No 251
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=34.32 E-value=84 Score=30.40 Aligned_cols=77 Identities=17% Similarity=0.188 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhc---CCcEEEe----
Q 005719 56 AVTALKMLRENRNNFD-LVISDVHMPDM---DGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITH---GACDYLL---- 124 (681)
Q Consensus 56 a~eALe~L~e~~~~pD-LVLlDV~MPdm---DG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~---GA~DYLl---- 124 (681)
..+.++.+.+. .++ +++.++.-.+. -.+++++++....++|||+...-...+.+.++++. ||+.+++
T Consensus 151 ~~e~~~~~~~~--G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al 228 (244)
T 2y88_A 151 LWDVLERLDSE--GCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKAL 228 (244)
T ss_dssp HHHHHHHHHHT--TCCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHH
T ss_pred HHHHHHHHHhC--CCCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHH
Confidence 34544544432 366 45567654322 24678888876678999999888888999999998 9988754
Q ss_pred --CCCChHHHHH
Q 005719 125 --KPVRIEELKN 134 (681)
Q Consensus 125 --KPvs~eEL~~ 134 (681)
.|....++.+
T Consensus 229 ~~~~~~~~~~~~ 240 (244)
T 2y88_A 229 YARRFTLPQALA 240 (244)
T ss_dssp HTTSSCHHHHHH
T ss_pred HCCCcCHHHHHH
Confidence 3555555443
No 252
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=34.29 E-value=61 Score=33.73 Aligned_cols=96 Identities=18% Similarity=0.166 Sum_probs=56.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIM 101 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVIm 101 (681)
..|||||+-- -.+...+.+.|.+ .++|+++....+.++.+.+ ....+-+|+. |--++.+.+. ..++-|.+
T Consensus 15 ~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~---~~~~~~~d~~----d~~~l~~~~~-~~DvVi~~ 84 (365)
T 3abi_A 15 RHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKE---FATPLKVDAS----NFDKLVEVMK-EFELVIGA 84 (365)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTT---TSEEEECCTT----CHHHHHHHHT-TCSEEEEC
T ss_pred CccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhc---cCCcEEEecC----CHHHHHHHHh-CCCEEEEe
Confidence 4589999988 6667777777865 6899988766666666643 2455556653 3223333333 23432222
Q ss_pred EEcCCChHHHHHHHhcCCcEEEeCCCC
Q 005719 102 LSAYGDTKLVMKGITHGACDYLLKPVR 128 (681)
Q Consensus 102 LSa~~d~e~v~kAl~~GA~DYLlKPvs 128 (681)
+-..-....+..|++.|. +|+.--+.
T Consensus 85 ~p~~~~~~v~~~~~~~g~-~yvD~s~~ 110 (365)
T 3abi_A 85 LPGFLGFKSIKAAIKSKV-DMVDVSFM 110 (365)
T ss_dssp CCGGGHHHHHHHHHHHTC-EEEECCCC
T ss_pred cCCcccchHHHHHHhcCc-ceEeeecc
Confidence 222334566777888887 46654333
No 253
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=34.25 E-value=1.8e+02 Score=28.19 Aligned_cols=69 Identities=17% Similarity=0.174 Sum_probs=46.4
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCCCCC---HHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 55 QAVTALKMLRENRNNFD-LVISDVHMPDMD---GFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 55 ~a~eALe~L~e~~~~pD-LVLlDV~MPdmD---G~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
+..+..+.+.+.. .| |.+.|....... -+++++.++...++|||+.....+.+.+.+++..||+..++-
T Consensus 32 d~~~~a~~~~~~G--ad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg 104 (252)
T 1ka9_F 32 DPVEAARAYDEAG--ADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVN 104 (252)
T ss_dssp CHHHHHHHHHHHT--CSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred CHHHHHHHHHHcC--CCEEEEEcCCccccCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 3444444444322 34 455566543222 245677777777899999988888999999999999887764
No 254
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=33.73 E-value=1.2e+02 Score=29.39 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=50.0
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhc---CCcEEEe---
Q 005719 55 QAVTALKMLRENRNNFD-LVISDVHMPDM---DGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITH---GACDYLL--- 124 (681)
Q Consensus 55 ~a~eALe~L~e~~~~pD-LVLlDV~MPdm---DG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~---GA~DYLl--- 124 (681)
+..+..+.+.+. .+| ++++++.-.++ -.+++++++....++|||+...-...+.+.++++. ||+.++.
T Consensus 147 ~~~e~~~~~~~~--G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~a 224 (244)
T 1vzw_A 147 DLYETLDRLNKE--GCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKA 224 (244)
T ss_dssp BHHHHHHHHHHT--TCCCEEEEEC-------CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHH
T ss_pred CHHHHHHHHHhC--CCCEEEEeccCcccccCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHH
Confidence 445544444432 366 55566642221 23678888876668999999888888999999999 9998765
Q ss_pred ---CCCChHHHHH
Q 005719 125 ---KPVRIEELKN 134 (681)
Q Consensus 125 ---KPvs~eEL~~ 134 (681)
.|+...++.+
T Consensus 225 l~~~~~~~~~~~~ 237 (244)
T 1vzw_A 225 LYAKAFTLEEALE 237 (244)
T ss_dssp HHTTSSCHHHHHH
T ss_pred HHcCCCCHHHHHH
Confidence 3555555443
No 255
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=33.43 E-value=1.8e+02 Score=31.06 Aligned_cols=56 Identities=20% Similarity=0.297 Sum_probs=40.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC---C------eEE-EECCHHHHHHHHHhcCCCceEEEEeCCC
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQ---Y------EVT-VTNQAVTALKMLRENRNNFDLVISDVHM 79 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~g---y------~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~M 79 (681)
-+|.+||=|+...+..++.+.... + .+. +..++.+.++.+......||+||+|.--
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d 277 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTA 277 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCS
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCC
Confidence 589999999999999998875321 1 243 4678888777653233569999999865
No 256
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=33.27 E-value=38 Score=32.33 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=34.2
Q ss_pred CceEEEEeCCCCCCCH-------HHHHHHHhcc-----CCCcEEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 69 NFDLVISDVHMPDMDG-------FKLLEHVGLE-----MDLPVIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 69 ~pDLVLlDV~MPdmDG-------~elLe~I~~~-----~dlPVImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
..|.|+++...|+.+| ++-++.++.. .++||++.-+-. .+.+.++++.||+.+++
T Consensus 131 ~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~-~~~~~~~~~~Gad~vvv 197 (220)
T 2fli_A 131 LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVA 197 (220)
T ss_dssp TCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEE
T ss_pred hCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECcCC-HHHHHHHHHcCCCEEEE
Confidence 4788988777665544 2334444321 267776554444 66677788889988754
No 257
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=32.76 E-value=1e+02 Score=29.30 Aligned_cols=91 Identities=12% Similarity=0.024 Sum_probs=42.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHH--HHHHHHHhcCCCceEEEEeCCCCCCC-HHHHHHHHhc-cCCCc
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAV--TALKMLRENRNNFDLVISDVHMPDMD-GFKLLEHVGL-EMDLP 98 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~--eALe~L~e~~~~pDLVLlDV~MPdmD-G~elLe~I~~-~~dlP 98 (681)
|..|.++|.++...+.+.+ ..++.+.. .++. +.++.+ .-...|+||+-+ ++.. -..+...++. .+...
T Consensus 23 g~~v~vid~~~~~~~~l~~---~~~~~~i~-gd~~~~~~l~~a--~i~~ad~vi~~~--~~d~~n~~~~~~a~~~~~~~~ 94 (218)
T 3l4b_C 23 KYGVVIINKDRELCEEFAK---KLKATIIH-GDGSHKEILRDA--EVSKNDVVVILT--PRDEVNLFIAQLVMKDFGVKR 94 (218)
T ss_dssp TCCEEEEESCHHHHHHHHH---HSSSEEEE-SCTTSHHHHHHH--TCCTTCEEEECC--SCHHHHHHHHHHHHHTSCCCE
T ss_pred CCeEEEEECCHHHHHHHHH---HcCCeEEE-cCCCCHHHHHhc--CcccCCEEEEec--CCcHHHHHHHHHHHHHcCCCe
Confidence 4567777777665443332 23554433 2222 233322 123578888754 2211 1122222333 34455
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEE
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYL 123 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYL 123 (681)
||+.+.. .+........||+..+
T Consensus 95 iia~~~~--~~~~~~l~~~G~d~vi 117 (218)
T 3l4b_C 95 VVSLVND--PGNMEIFKKMGITTVL 117 (218)
T ss_dssp EEECCCS--GGGHHHHHHHTCEECC
T ss_pred EEEEEeC--cchHHHHHHCCCCEEE
Confidence 6555443 3344445667875433
No 258
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=32.63 E-value=42 Score=31.78 Aligned_cols=56 Identities=11% Similarity=-0.013 Sum_probs=35.5
Q ss_pred CHHHHHHHHhccC-CCcEEE--EEcCCChHHHHHHHhcCCcEEEeCCCCh-HHHHHHHHH
Q 005719 83 DGFKLLEHVGLEM-DLPVIM--LSAYGDTKLVMKGITHGACDYLLKPVRI-EELKNIWQH 138 (681)
Q Consensus 83 DG~elLe~I~~~~-dlPVIm--LSa~~d~e~v~kAl~~GA~DYLlKPvs~-eEL~~i~q~ 138 (681)
+|.++++.|+... +.||++ +..+-....+..+.+.||+...+.+... +.+..+++.
T Consensus 39 ~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~~~~~~~~~~~~~ 98 (207)
T 3ajx_A 39 EGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGSADDSTIAGAVKA 98 (207)
T ss_dssp HCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHH
T ss_pred hCHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEEEeccCChHHHHHHHHH
Confidence 4566788776543 788774 4432123347889999999888777655 455544443
No 259
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=32.40 E-value=53 Score=31.15 Aligned_cols=57 Identities=11% Similarity=-0.018 Sum_probs=36.2
Q ss_pred CHHHHHHHHhcc-CCCcEEE--EEcCCChHHHHHHHhcCCcEEEeCCCCh-HHHHHHHHHH
Q 005719 83 DGFKLLEHVGLE-MDLPVIM--LSAYGDTKLVMKGITHGACDYLLKPVRI-EELKNIWQHV 139 (681)
Q Consensus 83 DG~elLe~I~~~-~dlPVIm--LSa~~d~e~v~kAl~~GA~DYLlKPvs~-eEL~~i~q~V 139 (681)
.|+++++.++.. .++||.+ +..+.....+..+.+.||+.+++-.... +.+...++.+
T Consensus 39 ~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~ 99 (211)
T 3f4w_A 39 EGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAA 99 (211)
T ss_dssp HTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCChhHHHHHHHHH
Confidence 467888888755 5788743 2333333348899999999888865443 4445544443
No 260
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=32.00 E-value=63 Score=29.45 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=44.8
Q ss_pred cCCCCccccchhhHHHHHHHHHHhcCCCCChhhHHhhc--CCCCCcHHHHHHhhhhhHhhhccc
Q 005719 209 TQKKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLM--NVEGLTRENVASHLQKFRLYLKRL 270 (681)
Q Consensus 209 ~~kk~r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m--~v~glt~~~v~ShLqkyr~~l~~~ 270 (681)
..++.|-.||+|=-...++.|++.|..+ =+.|++.+ ..+|-|--+++- |||.++|+.
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~--W~~I~~~~~~~~~~RT~vdlKd---RWrnllk~~ 84 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGR--WRDVKFRAFENVHHRTYVDLKD---KWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSC--HHHHHHHHHSSSCCCCHHHHHH---HHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCC--hHHHHHHhccccCCCCHHHHHH---HHHHHHhhc
Confidence 3566788999999999999999999533 24677654 348899999986 899998754
No 261
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=31.73 E-value=1.7e+02 Score=28.15 Aligned_cols=85 Identities=13% Similarity=0.082 Sum_probs=55.0
Q ss_pred HHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEE---EEeCCCCC-----CCHHHHHHHHhccCCCcEEEEEcC
Q 005719 36 LKVLENFLRAC-QYEVT-VTNQAVTALKMLRENRNNFDLV---ISDVHMPD-----MDGFKLLEHVGLEMDLPVIMLSAY 105 (681)
Q Consensus 36 r~iL~~~Le~~-gy~Vt-~as~a~eALe~L~e~~~~pDLV---LlDV~MPd-----mDG~elLe~I~~~~dlPVImLSa~ 105 (681)
.+.++.+-+.+ +..+. .+.+..++...+.. ..|+| ++.+. +. ...+++++.+... ++|||+...-
T Consensus 121 ~~~i~~i~~~~~~~~v~~~~~t~~ea~~a~~~---Gad~i~~~v~g~~-~~~~~~~~~~~~~i~~~~~~-~ipvia~GGI 195 (234)
T 1yxy_A 121 ASFIRQVKEKYPNQLLMADISTFDEGLVAHQA---GIDFVGTTLSGYT-PYSRQEAGPDVALIEALCKA-GIAVIAEGKI 195 (234)
T ss_dssp HHHHHHHHHHCTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSS-TTSCCSSSCCHHHHHHHHHT-TCCEEEESCC
T ss_pred HHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc---CCCEEeeeccccC-CCCcCCCCCCHHHHHHHHhC-CCCEEEECCC
Confidence 34444443333 44444 34566777666542 47888 33321 21 1246778888655 8999998888
Q ss_pred CChHHHHHHHhcCCcEEEeC
Q 005719 106 GDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 106 ~d~e~v~kAl~~GA~DYLlK 125 (681)
.+.+.+.++++.||+.+++-
T Consensus 196 ~s~~~~~~~~~~Gad~v~vG 215 (234)
T 1yxy_A 196 HSPEEAKKINDLGVAGIVVG 215 (234)
T ss_dssp CSHHHHHHHHTTCCSEEEEC
T ss_pred CCHHHHHHHHHCCCCEEEEc
Confidence 88999999999999988654
No 262
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=31.60 E-value=1.5e+02 Score=31.27 Aligned_cols=87 Identities=17% Similarity=0.099 Sum_probs=59.2
Q ss_pred HHHHHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHhcc--CCCcEEEEEcCC
Q 005719 36 LKVLENFLRACQYEVTV--TNQAVTALKMLRENRNNFDLVISDVHMP-----DMDGFKLLEHVGLE--MDLPVIMLSAYG 106 (681)
Q Consensus 36 r~iL~~~Le~~gy~Vt~--as~a~eALe~L~e~~~~pDLVLlDV~MP-----dmDG~elLe~I~~~--~dlPVImLSa~~ 106 (681)
.+.++.+-+..+..|.+ +.+..++..++. ...|.|.+.-+-. ...-++++..+... .++|||....-.
T Consensus 214 ~~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~---~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~ 290 (370)
T 1gox_A 214 WKDVAWLQTITSLPILVKGVITAEDARLAVQ---HGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVR 290 (370)
T ss_dssp HHHHHHHHHHCCSCEEEECCCSHHHHHHHHH---TTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCC
T ss_pred HHHHHHHHHHhCCCEEEEecCCHHHHHHHHH---cCCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 34566665666666654 456677766554 2489888854221 12346677776432 279999999999
Q ss_pred ChHHHHHHHhcCCcEEEeC
Q 005719 107 DTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 107 d~e~v~kAl~~GA~DYLlK 125 (681)
....+.+++..||+...+-
T Consensus 291 ~~~D~~k~l~~GAdaV~iG 309 (370)
T 1gox_A 291 RGTDVFKALALGAAGVFIG 309 (370)
T ss_dssp SHHHHHHHHHHTCSEEEEC
T ss_pred CHHHHHHHHHcCCCEEeec
Confidence 9999999999999987664
No 263
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.27 E-value=89 Score=24.98 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=38.8
Q ss_pred CCCccccchhhHHHHHHHHHHhcCCCCChhhHHhhcCCCCCcHHHHHHhhhhhHhhhc
Q 005719 211 KKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFRLYLK 268 (681)
Q Consensus 211 kk~r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~v~glt~~~v~ShLqkyr~~l~ 268 (681)
...|-.||+|=.++++++|.+.|..+ =+.|.+.|+ |-|..+++- +|+.||+
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~~~--W~~Ia~~l~--~Rt~~qcr~---Rw~~~L~ 56 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGKNQ--WSRIASLLH--RKSAKQCKA---RWYEWLD 56 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCSSC--HHHHHHHST--TCCHHHHHH---HHHHTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCC--HHHHHHHhc--CCCHHHHHH---HHHHHcC
Confidence 34566899999999999999999422 367777775 889888876 5566665
No 264
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=31.00 E-value=73 Score=23.88 Aligned_cols=44 Identities=16% Similarity=0.267 Sum_probs=33.2
Q ss_pred ccccchhhHHHHHHHHHHhcCCCCChhhHHhhcCCCCCcHHHHHHhhh
Q 005719 214 RVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQ 261 (681)
Q Consensus 214 r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~v~glt~~~v~ShLq 261 (681)
|-.||+|=..+++++|++.|.. -=+.|.+.| +|-|..+++.|-+
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~--~W~~Ia~~~--~~Rt~~qcr~Rw~ 46 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPK--RWSVIAKHL--KGRIGKQCRERWH 46 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTT--CHHHHHTTS--TTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcC--hHHHHHHHc--CCCCHHHHHHHHH
Confidence 4579999999999999999942 124566665 6889999887543
No 265
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=30.87 E-value=1.6e+02 Score=27.48 Aligned_cols=65 Identities=12% Similarity=0.072 Sum_probs=44.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCC-eEEEE-CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 005719 25 RVLAVDDDPTCLKVLENFLRACQY-EVTVT-NQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG 92 (681)
Q Consensus 25 RVLIVDDD~~~r~iL~~~Le~~gy-~Vt~a-s~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~ 92 (681)
+|..||-++...+..++.++..+. .+.+. .+..+.+. .....||+|++|.-....+..++++.+.
T Consensus 79 ~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~---~~~~~fD~V~~~~p~~~~~~~~~l~~l~ 145 (202)
T 2fpo_A 79 GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA---QKGTPHNIVFVDPPFRRGLLEETINLLE 145 (202)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS---SCCCCEEEEEECCSSSTTTHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh---hcCCCCCEEEECCCCCCCcHHHHHHHHH
Confidence 899999999999999998887775 55543 44444332 2234699999986433334455666663
No 266
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=30.54 E-value=1.7e+02 Score=28.89 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=34.5
Q ss_pred HHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 84 GFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 84 G~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
.+++++.++...++||++-..-.+.+.+.+++..||+.+++-
T Consensus 189 ~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 456777776666899998888887899999999999998764
No 267
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=30.24 E-value=45 Score=31.26 Aligned_cols=77 Identities=14% Similarity=0.166 Sum_probs=47.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCC-CCCCCHHHHHHHHhc--cCCCcEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVH-MPDMDGFKLLEHVGL--EMDLPVI 100 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~-MPdmDG~elLe~I~~--~~dlPVI 100 (681)
|.|+|||-...+...+.+.|++.|+.++++.... .++.+.. ..+|.||+-=. -|...+. +.+.|+. ..++||+
T Consensus 1 mmi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~--~~~dglil~Gg~~~~~~~~-~~~~i~~~~~~~~Pil 76 (189)
T 1wl8_A 1 MMIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKA--MNPKGIIFSGGPSLENTGN-CEKVLEHYDEFNVPIL 76 (189)
T ss_dssp CEEEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHHH--TCCSEEEECCCSCTTCCTT-HHHHHHTGGGTCSCEE
T ss_pred CeEEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhcc--cCCCEEEECCCCChhhhhh-HHHHHHHHhhCCCeEE
Confidence 4599999888778889999999999988776533 2222322 24787766321 2222221 2333332 4578999
Q ss_pred EEEc
Q 005719 101 MLSA 104 (681)
Q Consensus 101 mLSa 104 (681)
-++.
T Consensus 77 GIC~ 80 (189)
T 1wl8_A 77 GICL 80 (189)
T ss_dssp EETH
T ss_pred EEcH
Confidence 8875
No 268
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=29.97 E-value=1e+02 Score=31.36 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=28.4
Q ss_pred CCcEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCC
Q 005719 22 IGMRVLAVDDDPT---CLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMD 83 (681)
Q Consensus 22 ~GmRVLIVDDD~~---~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmD 83 (681)
.|.+|++++.|.. ..+.+..+.+..+..+....+..+....+... ..+|+||+| .++.+
T Consensus 133 ~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~~dlvIiD--T~G~~ 194 (296)
T 2px0_A 133 KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SEYDHVFVD--TAGRN 194 (296)
T ss_dssp TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GGSSEEEEE--CCCCC
T ss_pred cCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cCCCEEEEe--CCCCC
Confidence 3567777776652 12223333333343333333333322223222 358999999 44444
No 269
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=29.96 E-value=1.3e+02 Score=30.21 Aligned_cols=93 Identities=11% Similarity=0.081 Sum_probs=54.6
Q ss_pred HHHHHHhCC-CeEEEECCHHHHHHHHHh-cCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHh
Q 005719 39 LENFLRACQ-YEVTVTNQAVTALKMLRE-NRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGIT 116 (681)
Q Consensus 39 L~~~Le~~g-y~Vt~as~a~eALe~L~e-~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~ 116 (681)
+.+.|.+.+ ..|....+..++++.++. ....+++|=+ .+-.-++++.++.++....-.+|-....-+.+.+..+++
T Consensus 27 ~~~~l~~~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEv--t~~t~~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~ 104 (232)
T 4e38_A 27 INNQLKALKVIPVIAIDNAEDIIPLGKVLAENGLPAAEI--TFRSDAAVEAIRLLRQAQPEMLIGAGTILNGEQALAAKE 104 (232)
T ss_dssp HHHHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEE--ETTSTTHHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHH
T ss_pred HHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEE--eCCCCCHHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHH
Confidence 334444444 344455566666655432 1234555544 444557899999886543334555555567899999999
Q ss_pred cCCcEEEeCCCChHHHHH
Q 005719 117 HGACDYLLKPVRIEELKN 134 (681)
Q Consensus 117 ~GA~DYLlKPvs~eEL~~ 134 (681)
.||+ |+.-|-...++..
T Consensus 105 AGA~-fIvsP~~~~~vi~ 121 (232)
T 4e38_A 105 AGAT-FVVSPGFNPNTVR 121 (232)
T ss_dssp HTCS-EEECSSCCHHHHH
T ss_pred cCCC-EEEeCCCCHHHHH
Confidence 9995 4555654444433
No 270
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=29.55 E-value=1.3e+02 Score=31.25 Aligned_cols=41 Identities=12% Similarity=0.068 Sum_probs=30.7
Q ss_pred HHHHHHHhccCCCcEEE--EEcCCChHHHHHHHhcCCcEEEeC
Q 005719 85 FKLLEHVGLEMDLPVIM--LSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 85 ~elLe~I~~~~dlPVIm--LSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
+++++.+.....+|||+ ...-...+.+.+++..||+.+++-
T Consensus 196 ~~ll~~i~~~~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVG 238 (297)
T 4adt_A 196 IDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVG 238 (297)
T ss_dssp HHHHHHHHHHTSCSSEEEEESCCCSHHHHHHHHHTTCSCEEES
T ss_pred HHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEh
Confidence 56677776556788874 344457889999999999998763
No 271
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=29.46 E-value=1.3e+02 Score=30.26 Aligned_cols=59 Identities=19% Similarity=0.251 Sum_probs=40.6
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhC-----CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC
Q 005719 20 FPIGMRVLAVDDDPTCLKVLENFLRAC-----QYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPD 81 (681)
Q Consensus 20 fP~GmRVLIVDDD~~~r~iL~~~Le~~-----gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPd 81 (681)
.+...+|..||-++...+..++.+... .-+|. ...++.+.+.. ....||+||+|...|.
T Consensus 99 ~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~---~~~~fD~Ii~d~~~~~ 163 (283)
T 2i7c_A 99 YKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLEN---VTNTYDVIIVDSSDPI 163 (283)
T ss_dssp CTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHH---CCSCEEEEEEECCCTT
T ss_pred cCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHh---CCCCceEEEEcCCCCC
Confidence 344579999999999999988887543 22344 45666655432 2356999999986553
No 272
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Probab=29.46 E-value=64 Score=35.15 Aligned_cols=105 Identities=11% Similarity=0.210 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHhCCCe----EEEE--------------------CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH
Q 005719 31 DDPTCLKVLENFLRACQYE----VTVT--------------------NQAVTALKMLRENRNNFDLVISDVHMPDMDGFK 86 (681)
Q Consensus 31 DD~~~r~iL~~~Le~~gy~----Vt~a--------------------s~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~e 86 (681)
++...++.+.+.+++.||. |... -+..+|++++++.-..++++.++==++..| ++
T Consensus 216 ~~~e~l~~i~~Air~agy~~G~dv~l~vD~aase~~~~g~Y~l~~~~~t~~eai~~~~~ll~~y~i~~IEdPl~~dD-~e 294 (428)
T 3tqp_A 216 NNEAAFELILEAIEDANYVPGKDIYLALDAASSELYQNGRYDFENNQLTSEEMIDRLTEWTKKYPVISIEDGLSEND-WA 294 (428)
T ss_dssp SHHHHHHHHHHHHHHTTCCBTTTBEEEEECCGGGSEETTEECCSSSCBCHHHHHHHHHHHHHHSCEEEEECCSCTTC-HH
T ss_pred cHHHHHHHHHHHHHHhhcccCCceEEEEecchhhhccCCceeccccccCHHHHHHHHHHHHhhcccceEeCCCCccc-HH
Confidence 4455556666777777663 3322 245778877764112478888765555433 44
Q ss_pred HHHHHhccCCCcEEEEEcC-C--ChHHHHHHHhcCCcEE-EeCCCChHHHHHHH
Q 005719 87 LLEHVGLEMDLPVIMLSAY-G--DTKLVMKGITHGACDY-LLKPVRIEELKNIW 136 (681)
Q Consensus 87 lLe~I~~~~dlPVImLSa~-~--d~e~v~kAl~~GA~DY-LlKPvs~eEL~~i~ 136 (681)
-.+.|+.....||-++..+ . ....+.++++.+++++ .+|+-...-|.+.+
T Consensus 295 g~~~L~~~~~~pI~ivGDel~vt~~~~~~~~i~~~a~d~i~iKv~~iGGiTeal 348 (428)
T 3tqp_A 295 GWKLLTERLENKVQLVGDDIFVTNPDILEKGIKKNIANAILVKLNQIGTLTETL 348 (428)
T ss_dssp HHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHHH
T ss_pred HHHHHHHhcCCCcceeccccccCCHHHHHHHHHhCCCCEEEecccccCCHHHHH
Confidence 4455544344565444443 2 6778889999888765 56665443343333
No 273
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=29.05 E-value=4.2e+02 Score=26.50 Aligned_cols=104 Identities=8% Similarity=0.112 Sum_probs=56.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIML 102 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImL 102 (681)
|||.||---..-...+..+.+..+++++ ++..-.+..+.+.+.. ...-+.. |--++ + ..++-+|++
T Consensus 2 ~~vgiiG~G~~g~~~~~~l~~~~~~~~~~v~d~~~~~~~~~~~~~-~~~~~~~-------~~~~~---l--~~~~D~V~i 68 (325)
T 2ho3_A 2 LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRY-QNIQLFD-------QLEVF---F--KSSFDLVYI 68 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTSEEEEEEECSSHHHHHHHGGGS-SSCEEES-------CHHHH---H--TSSCSEEEE
T ss_pred eEEEEEeCCHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHc-CCCeEeC-------CHHHH---h--CCCCCEEEE
Confidence 6888888766555444444433356665 4443333333333221 1111121 11122 2 234555555
Q ss_pred EcCC--ChHHHHHHHhcCCcEEEeCCC--ChHHHHHHHHHHH
Q 005719 103 SAYG--DTKLVMKGITHGACDYLLKPV--RIEELKNIWQHVI 140 (681)
Q Consensus 103 Sa~~--d~e~v~kAl~~GA~DYLlKPv--s~eEL~~i~q~Vl 140 (681)
+... ..+.+.+++++|..=|+-||+ +.++.+.+++.+-
T Consensus 69 ~tp~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~ 110 (325)
T 2ho3_A 69 ASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAE 110 (325)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHH
T ss_pred eCChHHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHH
Confidence 4433 446788899999988999997 5677777666553
No 274
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=28.93 E-value=1.2e+02 Score=32.70 Aligned_cols=60 Identities=18% Similarity=0.278 Sum_probs=42.6
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhC------CC---eE-EEECCHHHHHHHHHhcCCCceEEEEeCCCC
Q 005719 20 FPIGMRVLAVDDDPTCLKVLENFLRAC------QY---EV-TVTNQAVTALKMLRENRNNFDLVISDVHMP 80 (681)
Q Consensus 20 fP~GmRVLIVDDD~~~r~iL~~~Le~~------gy---~V-t~as~a~eALe~L~e~~~~pDLVLlDV~MP 80 (681)
.|. -+|-+||=|+.+.+..++.|... .. +| .++.++.+.++...+....||+||+|+.-+
T Consensus 226 h~~-~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~ 295 (381)
T 3c6k_A 226 LKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAV 295 (381)
T ss_dssp TCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSS
T ss_pred cCC-ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCceeEEEECCCCC
Confidence 344 58999999999999988886321 11 14 357788888876654445799999998643
No 275
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=28.85 E-value=84 Score=28.59 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=45.8
Q ss_pred ccCCCCccccchhhHHHHHHHHHHhcCCCCChhhHHhhcC--CCCCcHHHHHHhhhhhHhhhccc
Q 005719 208 TTQKKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMN--VEGLTRENVASHLQKFRLYLKRL 270 (681)
Q Consensus 208 s~~kk~r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~--v~glt~~~v~ShLqkyr~~l~~~ 270 (681)
...+++|-.||+|=-...++.|+++|.-+ =+.|++.+. .+|-|--+++- |||.++++.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~--W~~Ia~~~~~~f~~RT~v~lKd---RWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGR--WRDVKMRAFDNADHRTYVDLKD---KWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGC--HHHHHHHHCSCCSSCCSHHHHH---HHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCC--HHHHHHHhccccCCCCHHHHHH---HHHHHHhhh
Confidence 34677888999999999999999999532 257777764 37889988887 888888753
No 276
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=28.54 E-value=4e+02 Score=26.39 Aligned_cols=98 Identities=12% Similarity=0.058 Sum_probs=58.7
Q ss_pred HHHHHHhCCC--eEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh--ccCCCcEEEEEcCCChHHHHHH
Q 005719 39 LENFLRACQY--EVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVG--LEMDLPVIMLSAYGDTKLVMKG 114 (681)
Q Consensus 39 L~~~Le~~gy--~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~--~~~dlPVImLSa~~d~e~v~kA 114 (681)
+++.|+.-.. .+.......+.++.+.. ..+|.|++|..-.-.+--++...+. .....++++=+...+...+..+
T Consensus 10 ~k~~l~~g~~~~~~~l~v~~p~~~e~a~~--~gaD~v~lDlEd~p~~~~~a~~~~~~~~~~~~~~~VRv~~~~~~~i~~~ 87 (256)
T 1dxe_A 10 FKAALAAKQVQIGCWSALSNPISTEVLGL--AGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRL 87 (256)
T ss_dssp HHHHHHTTCCEEEEEECSCSHHHHHHHTT--SCCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHH
T ss_pred HHHHHHCCCCeEEEEEeCCCHHHHHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHH
Confidence 5556654222 22223344455555543 4599999998554333323333332 2245778888888888889999
Q ss_pred HhcCCcEEEe-CCCChHHHHHHHHH
Q 005719 115 ITHGACDYLL-KPVRIEELKNIWQH 138 (681)
Q Consensus 115 l~~GA~DYLl-KPvs~eEL~~i~q~ 138 (681)
+..|++..++ |--+.++++.+++.
T Consensus 88 l~~g~~gI~~P~V~s~~ev~~~~~~ 112 (256)
T 1dxe_A 88 LDIGFYNFLIPFVETKEEAELAVAS 112 (256)
T ss_dssp HHTTCCEEEESCCCSHHHHHHHHHT
T ss_pred HhcCCceeeecCcCCHHHHHHHHHH
Confidence 9999987543 33467788665443
No 277
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=28.52 E-value=54 Score=30.89 Aligned_cols=78 Identities=23% Similarity=0.253 Sum_probs=44.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH---HHHHHHHHhcCCCceEEEEeCC-CCCCCH--HHHHHHHhccCCC
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQA---VTALKMLRENRNNFDLVISDVH-MPDMDG--FKLLEHVGLEMDL 97 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a---~eALe~L~e~~~~pDLVLlDV~-MPdmDG--~elLe~I~~~~dl 97 (681)
+||+|||.-..+...+.++|++.|++++++... .+..+.+.. ...+++||+-=- -|...+ .++++.+ ..++
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~-~~~~~iil~gGpg~~~~~~~~~~l~~~~--~~~~ 77 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLAT-MKNPVLMLSPGPGVPSEAGCMPELLTRL--RGKL 77 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTT-CSSEEEEECCCSSCGGGSTTHHHHHHHH--BTTB
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhh-ccCCeEEECCCCcCchhCchHHHHHHHH--hcCC
Confidence 489999966667778889999999998887654 333333321 112455554211 111112 2334433 3568
Q ss_pred cEEEEEc
Q 005719 98 PVIMLSA 104 (681)
Q Consensus 98 PVImLSa 104 (681)
||+-++-
T Consensus 78 PilGIC~ 84 (192)
T 1i1q_B 78 PIIGICL 84 (192)
T ss_dssp CEEEETH
T ss_pred CEEEECc
Confidence 8887764
No 278
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=28.35 E-value=1.6e+02 Score=30.70 Aligned_cols=66 Identities=15% Similarity=0.092 Sum_probs=44.8
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEE
Q 005719 51 TVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYL 123 (681)
Q Consensus 51 t~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYL 123 (681)
+.+.+..++.+.+.. ..|+|++|- |+--++-+.+.....-..|..|+.-..+.+.+..+.|++.+-
T Consensus 212 VEv~tl~e~~eAl~a---GaDiImLDn----~s~~~l~~av~~~~~~v~leaSGGIt~~~i~~~A~tGVD~Is 277 (300)
T 3l0g_A 212 IECDNISQVEESLSN---NVDMILLDN----MSISEIKKAVDIVNGKSVLEVSGCVNIRNVRNIALTGVDYIS 277 (300)
T ss_dssp EEESSHHHHHHHHHT---TCSEEEEES----CCHHHHHHHHHHHTTSSEEEEESSCCTTTHHHHHTTTCSEEE
T ss_pred EEECCHHHHHHHHHc---CCCEEEECC----CCHHHHHHHHHhhcCceEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 468889999998874 489999995 333233333322223456778888888888888888987653
No 279
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=28.28 E-value=1.9e+02 Score=26.86 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=21.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTN 54 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as 54 (681)
|||||..-.--+...+.+.|.+.|++|+.+.
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~ 31 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGA 31 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEE
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEE
Confidence 5788887777777777777766677777554
No 280
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=28.26 E-value=2.5e+02 Score=27.11 Aligned_cols=42 Identities=21% Similarity=0.296 Sum_probs=34.3
Q ss_pred HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCC
Q 005719 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126 (681)
Q Consensus 85 ~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKP 126 (681)
+++++.++...++|||+...-.+.+.+.++++.||+..++--
T Consensus 63 ~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~ 104 (253)
T 1thf_D 63 LELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINT 104 (253)
T ss_dssp HHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESH
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 566777776678999998888888999999999998877643
No 281
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=28.24 E-value=1e+02 Score=33.14 Aligned_cols=58 Identities=14% Similarity=0.285 Sum_probs=31.5
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCe-EEEE-----------------CCHHHHHHHHHhcCCCceEEEEeC
Q 005719 18 DKFPIGMRVLAVDDDPTCLKVLENFLRACQYE-VTVT-----------------NQAVTALKMLRENRNNFDLVISDV 77 (681)
Q Consensus 18 ~~fP~GmRVLIVDDD~~~r~iL~~~Le~~gy~-Vt~a-----------------s~a~eALe~L~e~~~~pDLVLlDV 77 (681)
..-|..||||||........+..++.+..+.. |.++ .+....++++++. .+|+|+...
T Consensus 16 ~~~p~~m~ilvlG~ggre~ala~~l~~s~~v~~v~~~pgn~g~~~~~~~~~i~~~d~~~l~~~a~~~--~id~vv~g~ 91 (442)
T 3lp8_A 16 TQGPGSMNVLVIGSGGREHSMLHHIRKSTLLNKLFIAPGREGMSGLADIIDIDINSTIEVIQVCKKE--KIELVVIGP 91 (442)
T ss_dssp ----CCEEEEEEECSHHHHHHHHHHTTCTTEEEEEEEECCGGGTTTSEECCCCTTCHHHHHHHHHHT--TCCEEEECS
T ss_pred cCCCCCCEEEEECCChHHHHHHHHHHhCCCCCEEEEECCChHHhhccceeecCcCCHHHHHHHHHHh--CCCEEEECC
Confidence 34578899999999865544444443332322 2222 1334455566543 489999753
No 282
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=28.14 E-value=2e+02 Score=30.71 Aligned_cols=113 Identities=10% Similarity=0.025 Sum_probs=60.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEEE-CCHHHHHHHHHh---cCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTVT-NQAVTALKMLRE---NRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLP 98 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~a-s~a~eALe~L~e---~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlP 98 (681)
.+||.||---..-..-+..+...-+++++.+ ....+..+.+.+ ....++.-+.+- ...| .+.+-...++-
T Consensus 20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~--~~~~----~~~ll~~~~vD 93 (444)
T 2ixa_A 20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGN--GNDD----YKNMLKDKNID 93 (444)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECS--STTT----HHHHTTCTTCC
T ss_pred CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceecc--CCCC----HHHHhcCCCCC
Confidence 4799999887665554544433236777644 333333332221 111111222210 0112 22222234455
Q ss_pred EEEEEcC--CChHHHHHHHhcCCcEEEeCCCC--hHHHHHHHHHHHH
Q 005719 99 VIMLSAY--GDTKLVMKGITHGACDYLLKPVR--IEELKNIWQHVIR 141 (681)
Q Consensus 99 VImLSa~--~d~e~v~kAl~~GA~DYLlKPvs--~eEL~~i~q~Vlr 141 (681)
+|+++.. ...+.+.+|+++|..=|+-||+. .++.+++++.+-+
T Consensus 94 ~V~i~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~ 140 (444)
T 2ixa_A 94 AVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQ 140 (444)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHH
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 5555433 44678889999999999999964 6777777766543
No 283
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=27.97 E-value=72 Score=31.53 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=36.9
Q ss_pred CceEEEEeCCCCCCCH-------HHHHHHHhcc-CCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 69 NFDLVISDVHMPDMDG-------FKLLEHVGLE-MDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 69 ~pDLVLlDV~MPdmDG-------~elLe~I~~~-~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
..|+|++....|+..| ++-++.++.. .+++| .+..--+.+.+.++.++||+-++.-
T Consensus 134 ~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I-~VdGGI~~~t~~~~~~aGAd~~VvG 197 (228)
T 3ovp_A 134 QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDI-EVDGGVGPDTVHKCAEAGANMIVSG 197 (228)
T ss_dssp GCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCEE-EEESSCSTTTHHHHHHHTCCEEEES
T ss_pred cCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCCE-EEeCCcCHHHHHHHHHcCCCEEEEe
Confidence 3688887666777655 3335555432 34554 4555556788889999999987654
No 284
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.95 E-value=82 Score=25.03 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=32.0
Q ss_pred CCCCccccchhhHHHHHHHHHHhcCCCCChhhHHhhcCCCCCcHHHHHH
Q 005719 210 QKKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVAS 258 (681)
Q Consensus 210 ~kk~r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~v~glt~~~v~S 258 (681)
....+-.||++=|+.|.+|+.+-|-| =.+|.+.| |+.-|..+|..
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKd---f~~I~~~~-v~~Kt~~~~v~ 49 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKN---FFRIRKEL-LPNKETGELIT 49 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSC---HHHHHHHS-CTTSCHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCcc---HHHHHHHH-cCCCcHHHHHH
Confidence 34456689999999999999999943 23444422 66777777754
No 285
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=27.70 E-value=80 Score=30.37 Aligned_cols=67 Identities=10% Similarity=0.033 Sum_probs=45.8
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCC--------CCHHHHHHHHhcc--CCCcEEEEEcCCChHHHHHHHhcCCcE
Q 005719 52 VTNQAVTALKMLRENRNNFDLVISDVHMPD--------MDGFKLLEHVGLE--MDLPVIMLSAYGDTKLVMKGITHGACD 121 (681)
Q Consensus 52 ~as~a~eALe~L~e~~~~pDLVLlDV~MPd--------mDG~elLe~I~~~--~dlPVImLSa~~d~e~v~kAl~~GA~D 121 (681)
.+.+..++.+.. ...|.|+++.-.|. .-|++.++.+... ..+|||.+.+-. .+.+.++++.||+.
T Consensus 94 s~~t~~e~~~A~----~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~g 168 (210)
T 3ceu_A 94 SCHSVEEVKNRK----HFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFGG 168 (210)
T ss_dssp EECSHHHHHTTG----GGSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCSE
T ss_pred ecCCHHHHHHHh----hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCCE
Confidence 456777765543 24799988765432 1367788887544 589999887655 66788889999988
Q ss_pred EE
Q 005719 122 YL 123 (681)
Q Consensus 122 YL 123 (681)
+-
T Consensus 169 Va 170 (210)
T 3ceu_A 169 AV 170 (210)
T ss_dssp EE
T ss_pred EE
Confidence 73
No 286
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=27.65 E-value=60 Score=30.39 Aligned_cols=67 Identities=19% Similarity=0.322 Sum_probs=46.1
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 005719 19 KFPIGMRVLAVDDDPTCLKVLENFLRACQY--EVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHV 91 (681)
Q Consensus 19 ~fP~GmRVLIVDDD~~~r~iL~~~Le~~gy--~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I 91 (681)
.+|.+.+|..||-++...+..++.++..+. .|. ...++.+.+.. ... ||+|++|.. ..+-..+++.+
T Consensus 77 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~-fD~v~~~~~--~~~~~~~l~~~ 146 (210)
T 3c3p_A 77 AISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAG---QRD-IDILFMDCD--VFNGADVLERM 146 (210)
T ss_dssp TSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTT---CCS-EEEEEEETT--TSCHHHHHHHH
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhcc---CCC-CCEEEEcCC--hhhhHHHHHHH
Confidence 356577999999999999999998887664 354 34555554332 234 999999954 33445666665
No 287
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=27.39 E-value=1.9e+02 Score=29.46 Aligned_cols=106 Identities=9% Similarity=0.062 Sum_probs=63.8
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHHhCCCe---------EEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHH
Q 005719 24 MRVLAVDDDPT-----CLKVLENFLRACQYE---------VTVTN--QAVTALKMLRENRNNFDLVISDVHMPDMDGFKL 87 (681)
Q Consensus 24 mRVLIVDDD~~-----~r~iL~~~Le~~gy~---------Vt~as--~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~el 87 (681)
.+++||.+.+. ....++++++..+.. |.... +..+..+.+.. .|++++--. -+.-|+.+
T Consensus 216 ~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~----adv~v~pS~-~E~~~~~~ 290 (413)
T 3oy2_A 216 AKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNA----CDVIVNCSS-GEGFGLCS 290 (413)
T ss_dssp CCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHH----CSEEEECCS-CCSSCHHH
T ss_pred cEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHh----CCEEEeCCC-cCCCCcHH
Confidence 46666644332 235566666555543 33323 23455555543 578777332 34456777
Q ss_pred HHHHhccCCCcEEEEEcCCChHHHHHHHhcCCc---------------EE--EeCCCChHHHHHHHHHHHH
Q 005719 88 LEHVGLEMDLPVIMLSAYGDTKLVMKGITHGAC---------------DY--LLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 88 Le~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~---------------DY--LlKPvs~eEL~~i~q~Vlr 141 (681)
++.+. ..+|||..- .....+.+..|.. ++ +..|-+.++|.+.+ .++.
T Consensus 291 lEAma--~G~PvI~s~----~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~ 354 (413)
T 3oy2_A 291 AEGAV--LGKPLIISA----VGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFK 354 (413)
T ss_dssp HHHHT--TTCCEEEEC----CHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTT
T ss_pred HHHHH--cCCCEEEcC----CCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhc
Confidence 77763 568988632 2344556666666 77 88999999999999 8764
No 288
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=27.23 E-value=1.5e+02 Score=27.65 Aligned_cols=62 Identities=10% Similarity=0.221 Sum_probs=35.6
Q ss_pred CCCCCCcEEEEE--eCC------------HHHHHHHHHHHHhCCCeEE---EECCHHHHH-HHHHh--cCCCceEEEEeC
Q 005719 18 DKFPIGMRVLAV--DDD------------PTCLKVLENFLRACQYEVT---VTNQAVTAL-KMLRE--NRNNFDLVISDV 77 (681)
Q Consensus 18 ~~fP~GmRVLIV--DDD------------~~~r~iL~~~Le~~gy~Vt---~as~a~eAL-e~L~e--~~~~pDLVLlDV 77 (681)
..-|..+||.|| .|. ......|.++|++.|++|. ++.+-.+.+ +.+.. ....+|+||+-=
T Consensus 10 ~~~~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittG 89 (178)
T 3iwt_A 10 ENAPKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp ---CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred hcCCCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 456777887665 331 2355678999999999876 444543333 23331 124579998764
Q ss_pred CC
Q 005719 78 HM 79 (681)
Q Consensus 78 ~M 79 (681)
-+
T Consensus 90 G~ 91 (178)
T 3iwt_A 90 GT 91 (178)
T ss_dssp CC
T ss_pred Cc
Confidence 33
No 289
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=27.15 E-value=1.1e+02 Score=30.57 Aligned_cols=62 Identities=13% Similarity=0.164 Sum_probs=37.7
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCC--C-hH-HHHHHHhcCCcEEEeCCCC--hHHHHHHHHHH
Q 005719 70 FDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYG--D-TK-LVMKGITHGACDYLLKPVR--IEELKNIWQHV 139 (681)
Q Consensus 70 pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~--d-~e-~v~kAl~~GA~DYLlKPvs--~eEL~~i~q~V 139 (681)
.|++++-- . |..++|.+. ..+|||+..... + .. ......+.|+ .++..|-+ .++|.+.+..+
T Consensus 255 ad~~v~~s----g-~~~~~EAma--~G~Pvi~~~~~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~l 322 (364)
T 1f0k_A 255 ADVVVCRS----G-ALTVSEIAA--AGLPALFVPFQHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTLAGW 322 (364)
T ss_dssp CSEEEECC----C-HHHHHHHHH--HTCCEEECCCCCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHTC
T ss_pred CCEEEECC----c-hHHHHHHHH--hCCCEEEeeCCCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHHHhc
Confidence 35655532 2 677777663 368988764331 1 11 1234456676 89998865 88888877654
No 290
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=27.15 E-value=77 Score=26.83 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=39.6
Q ss_pred ccchhhHHHHHHHHHHhcCCCCChhhHHhhcC--CCCCcHHHHHHhhhhhHhhhccc
Q 005719 216 VWTPELHRKFVGAVNQLGVDKAVPKKILDLMN--VEGLTRENVASHLQKFRLYLKRL 270 (681)
Q Consensus 216 ~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~--v~glt~~~v~ShLqkyr~~l~~~ 270 (681)
.||+|=....++.|++.|..+ =+.|++... ++|-|-.+++- |||.++|+-
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~--W~~I~~~~~~~~~~RT~~~lKd---rWrnllk~~ 53 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGR--WRDVKMRAFDNADHRTYVDLKD---KWKTLVHTA 53 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSC--HHHHHHHHCTTCTTSCHHHHHH---HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCC--cHHHHHhhccccCCCCHHHHHH---HHHHHHHhc
Confidence 599999999999999999533 246776522 58999999998 889888753
No 291
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=27.08 E-value=1.1e+02 Score=31.11 Aligned_cols=71 Identities=27% Similarity=0.260 Sum_probs=0.0
Q ss_pred cEEEEEe----CCHHHHHHHHHHHHhCCCeEEEECC--------------------------------------------
Q 005719 24 MRVLAVD----DDPTCLKVLENFLRACQYEVTVTNQ-------------------------------------------- 55 (681)
Q Consensus 24 mRVLIVD----DD~~~r~iL~~~Le~~gy~Vt~as~-------------------------------------------- 55 (681)
||||++- .+..-...|.+.|.+.|++|+++..
T Consensus 2 MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (391)
T 3tsa_A 2 MRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHGAGLTTAGIRGNDRTGDTGGTTQLRFPNPAFGQRDT 81 (391)
T ss_dssp CEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHHBTCEEEEC--------------CCSCCGGGGCTTS
T ss_pred cEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHhCCCceeeecCCccchhhhhhhcccccccccccccc
Q ss_pred ---------------------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 005719 56 ---------------------AVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIML 102 (681)
Q Consensus 56 ---------------------a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImL 102 (681)
..+..+.+++.+ ||+|++|. +...|.-+.+.++ +|+|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--PD~Vv~~~--~~~~~~~aa~~~g----iP~v~~ 141 (391)
T 3tsa_A 82 EAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWR--PSVLLVDV--CALIGRVLGGLLD----LPVVLH 141 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CSEEEEET--TCHHHHHHHHHTT----CCEEEE
T ss_pred hhHHHHHHHHHHHHhhcchhhHHHHHHHHHhcC--CCEEEeCc--chhHHHHHHHHhC----CCEEEE
No 292
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=27.04 E-value=2.5e+02 Score=27.70 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=39.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-eEE-EECCHHHHHHHHHhcCCCceEEEEeC
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQY-EVT-VTNQAVTALKMLRENRNNFDLVISDV 77 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy-~Vt-~as~a~eALe~L~e~~~~pDLVLlDV 77 (681)
-+|..+|-++...+.+++.+++.|. .|. +..++.+....+......||+|++|.
T Consensus 109 ~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~ 164 (274)
T 3ajd_A 109 GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDA 164 (274)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcC
Confidence 6899999999999999999988876 454 44566554433321234699999995
No 293
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=27.00 E-value=4.9e+02 Score=27.11 Aligned_cols=81 Identities=12% Similarity=0.123 Sum_probs=50.8
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEE-EeCCCChHHHH
Q 005719 55 QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDY-LLKPVRIEELK 133 (681)
Q Consensus 55 ~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DY-LlKPvs~eEL~ 133 (681)
+..+|+++++.- ..+++.+++-=++. +-++.++.|+....+||+.--...+.....++++.|++|+ .+|+....=|.
T Consensus 209 ~~~~a~~~~~~l-~~~~i~~iEqP~~~-~d~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit 286 (372)
T 3tj4_A 209 DLPTCQRFCAAA-KDLDIYWFEEPLWY-DDVTSHARLARNTSIPIALGEQLYTVDAFRSFIDAGAVAYVQPDVTRLGGIT 286 (372)
T ss_dssp CHHHHHHHHHHT-TTSCEEEEESCSCT-TCHHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHH-hhcCCCEEECCCCc-hhHHHHHHHHhhcCCCEEeCCCccCHHHHHHHHHcCCCCEEEeCccccCCHH
Confidence 456777766654 34677666644443 2355566666556788775444456778888898887665 47887765555
Q ss_pred HHHH
Q 005719 134 NIWQ 137 (681)
Q Consensus 134 ~i~q 137 (681)
+.++
T Consensus 287 ~~~~ 290 (372)
T 3tj4_A 287 EYIQ 290 (372)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 294
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=26.68 E-value=2.2e+02 Score=25.19 Aligned_cols=52 Identities=8% Similarity=-0.066 Sum_probs=25.4
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEEcCCChHHHHHHHhcCCcEEE
Q 005719 69 NFDLVISDVHMPDMDGFKLLEHVGL-EMDLPVIMLSAYGDTKLVMKGITHGACDYL 123 (681)
Q Consensus 69 ~pDLVLlDV~MPdmDG~elLe~I~~-~~dlPVImLSa~~d~e~v~kAl~~GA~DYL 123 (681)
..|+||+-+.-.. .-..+...++. .+..+||+....... .......|++..+
T Consensus 71 ~ad~vi~~~~~d~-~n~~~~~~a~~~~~~~~ii~~~~~~~~--~~~l~~~G~~~vi 123 (153)
T 1id1_A 71 RCRAILALSDNDA-DNAFVVLSAKDMSSDVKTVLAVSDSKN--LNKIKMVHPDIIL 123 (153)
T ss_dssp TCSEEEECSSCHH-HHHHHHHHHHHHTSSSCEEEECSSGGG--HHHHHTTCCSEEE
T ss_pred hCCEEEEecCChH-HHHHHHHHHHHHCCCCEEEEEECCHHH--HHHHHHcCCCEEE
Confidence 4678887553211 11222223333 355677766544333 3334567887544
No 295
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=26.62 E-value=3.5e+02 Score=28.37 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=53.3
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-----CCCcEEEEEcCCChHHHHHHHhcCCcEEEe-CCCC
Q 005719 55 QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE-----MDLPVIMLSAYGDTKLVMKGITHGACDYLL-KPVR 128 (681)
Q Consensus 55 ~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~-----~dlPVImLSa~~d~e~v~kAl~~GA~DYLl-KPvs 128 (681)
...+.++.+... .+|.|++|..-.-.+--.+.+.+... ...++++-+...+...+..++..|++..++ |--+
T Consensus 51 ~~p~~~e~a~~~--GaD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gImlP~V~s 128 (339)
T 1izc_A 51 PSTFVTKVLAAT--KPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHVET 128 (339)
T ss_dssp CCHHHHHHHHHT--CCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEETTCCC
T ss_pred CCHHHHHHHHhC--CCCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCC
Confidence 334445555433 59999999965444443444444211 126788888888888999999999987444 3345
Q ss_pred hHHHHHHHHHH
Q 005719 129 IEELKNIWQHV 139 (681)
Q Consensus 129 ~eEL~~i~q~V 139 (681)
.++++.+...+
T Consensus 129 aee~~~~~~~~ 139 (339)
T 1izc_A 129 VEEVREFVKEM 139 (339)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 78887766554
No 296
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=26.56 E-value=96 Score=32.21 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=46.6
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHhccC--CCcEEEEEcCCChHHHHHHHhcCCcEEEeCC
Q 005719 69 NFDLVISDVHMPDMDGFKLLEHVGLEM--DLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126 (681)
Q Consensus 69 ~pDLVLlDV~MPdmDG~elLe~I~~~~--dlPVImLSa~~d~e~v~kAl~~GA~DYLlKP 126 (681)
..+||.+|..- ..-..+++++++... .+||++=-.-.+.+.+.+++..||+..++--
T Consensus 199 G~~lV~LD~~~-~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 199 GFHMVYLYSRN-EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp TCSEEEEECSS-SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred CCCEEEEcCCC-CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 36899999855 334468888887655 8999988888999999999999999998875
No 297
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=26.54 E-value=1.1e+02 Score=30.77 Aligned_cols=86 Identities=14% Similarity=0.142 Sum_probs=51.3
Q ss_pred cEEEEEeC-CHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH--HHHHHHhcc-CC
Q 005719 24 MRVLAVDD-DPTC---LKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF--KLLEHVGLE-MD 96 (681)
Q Consensus 24 mRVLIVDD-D~~~---r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~--elLe~I~~~-~d 96 (681)
|||+||-. .+.. ...+.+.|++.|+++. ...+|+||+ -+.||. .+++.+... .+
T Consensus 1 mki~ii~n~~~~~~~~~~~l~~~l~~~g~~v~---------------~~~~D~vv~----lGGDGT~l~aa~~~~~~~~~ 61 (272)
T 2i2c_A 1 MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYD---------------DVEPEIVIS----IGGDGTFLSAFHQYEERLDE 61 (272)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTSSCEEC---------------SSSCSEEEE----EESHHHHHHHHHHTGGGTTT
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEeC---------------CCCCCEEEE----EcCcHHHHHHHHHHhhcCCC
Confidence 56766643 2222 3345555777787761 235899887 377884 334444322 47
Q ss_pred CcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 97 LPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 97 lPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
+||+-+.. |-.+|+. .+.++++..++..++..
T Consensus 62 ~PilGIn~-------------G~lgfl~-~~~~~~~~~~l~~l~~g 93 (272)
T 2i2c_A 62 IAFIGIHT-------------GHLGFYA-DWRPAEADKLVKLLAKG 93 (272)
T ss_dssp CEEEEEES-------------SSCCSSC-CBCGGGHHHHHHHHHTT
T ss_pred CCEEEEeC-------------CCCCcCC-cCCHHHHHHHHHHHHcC
Confidence 89887742 3344554 56677888888887654
No 298
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=26.53 E-value=81 Score=29.38 Aligned_cols=57 Identities=7% Similarity=-0.045 Sum_probs=40.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCC
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDM 82 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdm 82 (681)
|||||..-.--+...+.+.|.+.|++|+.+....+.+..+. ...+.++..|+.-++.
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--~~~~~~~~~D~~d~~~ 57 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRL--GATVATLVKEPLVLTE 57 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHT--CTTSEEEECCGGGCCH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccccc--CCCceEEecccccccH
Confidence 68999998888888887777777999987765555555443 2347888888765543
No 299
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=26.50 E-value=1.4e+02 Score=32.31 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCCH-HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 57 VTALKMLRENRNNFDLVISDVHMPDMDG-FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 57 ~eALe~L~e~~~~pDLVLlDV~MPdmDG-~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
.+.++.+.+. .+|+|++|.....-.. .++++.++...++|||+= .....+.+..+.+.||+...+
T Consensus 146 ~e~~~~lvea--GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g-~V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLVEA--GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVG-NVVTEEATKELIENGADGIKV 211 (400)
T ss_dssp CHHHHHHHHH--TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHc--CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEe-ecCCHHHHHHHHHcCCCEEEE
Confidence 4445555443 3899999976543222 577888866567888862 224578889999999998877
No 300
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=26.32 E-value=3.8e+02 Score=26.78 Aligned_cols=104 Identities=12% Similarity=0.073 Sum_probs=54.9
Q ss_pred cEEEEEeCCHHHHHH-HHHHHHhCCCeEEE-ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005719 24 MRVLAVDDDPTCLKV-LENFLRACQYEVTV-TNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIM 101 (681)
Q Consensus 24 mRVLIVDDD~~~r~i-L~~~Le~~gy~Vt~-as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVIm 101 (681)
|||.||---..-... +..+.+ .+++++. +..-.+..+.+.+....+. +. .+--+ .+. ..++-+|+
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~-~~~~~vav~d~~~~~~~~~~~~~g~~~-~~-------~~~~~---~l~-~~~~D~V~ 67 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRA-TGGEVVSMMSTSAERGAAYATENGIGK-SV-------TSVEE---LVG-DPDVDAVY 67 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHH-TTCEEEEEECSCHHHHHHHHHHTTCSC-CB-------SCHHH---HHT-CTTCCEEE
T ss_pred CeEEEEcccHHHHHhhhHHhhc-CCCeEEEEECCCHHHHHHHHHHcCCCc-cc-------CCHHH---Hhc-CCCCCEEE
Confidence 577778776555544 344444 6777763 4433333333322211100 00 12112 222 23444555
Q ss_pred EEcCC--ChHHHHHHHhcCCcEEEeCCC--ChHHHHHHHHHHH
Q 005719 102 LSAYG--DTKLVMKGITHGACDYLLKPV--RIEELKNIWQHVI 140 (681)
Q Consensus 102 LSa~~--d~e~v~kAl~~GA~DYLlKPv--s~eEL~~i~q~Vl 140 (681)
++... ..+.+.++++.|..=|+-||+ +.++...+++.+-
T Consensus 68 i~tp~~~h~~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~ 110 (332)
T 2glx_A 68 VSTTNELHREQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAR 110 (332)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHH
T ss_pred EeCChhHhHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHH
Confidence 54433 346778899999888899997 5667776666553
No 301
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=26.29 E-value=1.7e+02 Score=26.41 Aligned_cols=49 Identities=22% Similarity=0.258 Sum_probs=38.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDV 77 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV 77 (681)
.|.||.++..... ..+|+..+..+..+.+..++++++... .+|+++.+.
T Consensus 111 ~g~~i~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~~g--~~D~~~~~~ 159 (228)
T 2pyy_A 111 PGKVVATTAGSTA-----ATYLREHHISVLEVPKIEEAYKALQTK--KADAVVFDA 159 (228)
T ss_dssp TTCEEEEETTSHH-----HHHHHHTTCEEEEESSHHHHHHHHHTT--SSSEEEEEH
T ss_pred CCCeEEEEcCcHH-----HHHHHHcCCceEecCCHHHHHHHHHcC--CCCEEEecH
Confidence 5789988877652 345556688899999999999999854 489999973
No 302
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=26.21 E-value=1.5e+02 Score=29.89 Aligned_cols=75 Identities=21% Similarity=0.124 Sum_probs=0.0
Q ss_pred CCc-EEEEE----eCCHHHHHHHHHHHHhCCCeEEEECC-----------------------------------------
Q 005719 22 IGM-RVLAV----DDDPTCLKVLENFLRACQYEVTVTNQ----------------------------------------- 55 (681)
Q Consensus 22 ~Gm-RVLIV----DDD~~~r~iL~~~Le~~gy~Vt~as~----------------------------------------- 55 (681)
+.| |||++ --+-.-...|.+.|.+.|++|+++..
T Consensus 2 m~M~~il~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (402)
T 3ia7_A 2 MRQRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAAGAEVVLYKSEFDTFHVPEVVKQEDAETQLHL 81 (402)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHTTCEEEECCCGGGTSSSSSSSCCTTHHHHHHH
T ss_pred CCCCEEEEEeCCCCcccccHHHHHHHHHhCCCEEEEEcCHHHHHHHHHcCCEEEecccccccccccccccccchHHHHHH
Q ss_pred ---------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEE
Q 005719 56 ---------AVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLS 103 (681)
Q Consensus 56 ---------a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLS 103 (681)
..+..+.+++.+ ||+|++|. ...-....+.....+|+|.+.
T Consensus 82 ~~~~~~~~~~~~l~~~l~~~~--pD~Vi~d~-----~~~~~~~~aA~~~giP~v~~~ 131 (402)
T 3ia7_A 82 VYVRENVAILRAAEEALGDNP--PDLVVYDV-----FPFIAGRLLAARWDRPAVRLT 131 (402)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC--CSEEEEES-----TTHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhccC--CCEEEECc-----hHHHHHHHHHHhhCCCEEEEe
No 303
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=26.07 E-value=2.1e+02 Score=30.21 Aligned_cols=88 Identities=16% Similarity=0.144 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCC----CC-CCCHHHHHHHHhcc--CCCcEEEEEcC
Q 005719 35 CLKVLENFLRACQYEVTV--TNQAVTALKMLRENRNNFDLVISDVH----MP-DMDGFKLLEHVGLE--MDLPVIMLSAY 105 (681)
Q Consensus 35 ~r~iL~~~Le~~gy~Vt~--as~a~eALe~L~e~~~~pDLVLlDV~----MP-dmDG~elLe~I~~~--~dlPVImLSa~ 105 (681)
..+.++.+-+..+..|.+ +.+..+|..+.. ...|.|.+.-+ +. +..-++++..+... .++|||+-..-
T Consensus 217 ~~~~i~~lr~~~~~PvivK~v~~~e~a~~a~~---~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~GGI 293 (368)
T 2nli_A 217 SPRDIEEIAGHSGLPVFVKGIQHPEDADMAIK---RGASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGV 293 (368)
T ss_dssp CHHHHHHHHHHSSSCEEEEEECSHHHHHHHHH---TTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSSC
T ss_pred hHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHH---cCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEECCC
Confidence 344555555555655553 467777766654 34888888542 11 23356777777432 26999999999
Q ss_pred CChHHHHHHHhcCCcEEEeC
Q 005719 106 GDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 106 ~d~e~v~kAl~~GA~DYLlK 125 (681)
.....+.+++..||+...+-
T Consensus 294 ~~g~D~~kalalGAd~V~iG 313 (368)
T 2nli_A 294 RRGEHVAKALASGADVVALG 313 (368)
T ss_dssp CSHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHcCCCEEEEC
Confidence 99999999999999988664
No 304
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=25.81 E-value=1e+02 Score=30.04 Aligned_cols=69 Identities=10% Similarity=0.147 Sum_probs=46.8
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCC---CCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 55 QAVTALKMLRENRNNFD-LVISDVHMP---DMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 55 ~a~eALe~L~e~~~~pD-LVLlDV~MP---dmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
+..+..+.+.+. .+| |.+.|+.-. ...-+++++.+.....+|||+-..-.+.+.+.++++.||+..++-
T Consensus 36 ~~~~~a~~~~~~--G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig 108 (247)
T 3tdn_A 36 LLRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSIN 108 (247)
T ss_dssp EHHHHHHHHHHT--TCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECCS
T ss_pred CHHHHHHHHHHc--CCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeehh
Confidence 344444444432 355 445565422 122368888887778999999888888899999999998776643
No 305
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=25.80 E-value=1.2e+02 Score=26.00 Aligned_cols=48 Identities=25% Similarity=0.399 Sum_probs=37.0
Q ss_pred ccccchhhHHHHHHHHHHhcCCCCChhhHHhhcCCCCCcHHHHHHhhhhhHhhhcc
Q 005719 214 RVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFRLYLKR 269 (681)
Q Consensus 214 r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~v~glt~~~v~ShLqkyr~~l~~ 269 (681)
+-.||+|=...++++|.+.|.. =..|.+. +||-|..+|+. +|+.+++|
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~~---W~~Ia~~--l~gRt~~~~k~---rw~~~~~~ 103 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGNR---WAEIAKL--LPGRTDNAIKN---HWNSTMRR 103 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSSC---HHHHHTT--CTTCCHHHHHH---HHHHHTC-
T ss_pred ccCCCHHHHHHHHHHHHHhCCC---HHHHHHH--cCCCCHHHHHH---HHHHHHhc
Confidence 4579999999999999999931 2456655 58999999999 46666665
No 306
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=25.64 E-value=1.9e+02 Score=25.56 Aligned_cols=63 Identities=8% Similarity=0.018 Sum_probs=41.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYE--VTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHV 91 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~--Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I 91 (681)
+.+|..+|-++...+..++.+...+.. +.+..+..+. +......||+|++...+.. .++++.+
T Consensus 49 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~D~i~~~~~~~~---~~~l~~~ 113 (178)
T 3hm2_A 49 QTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRA---FDDVPDNPDVIFIGGGLTA---PGVFAAA 113 (178)
T ss_dssp SEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGG---GGGCCSCCSEEEECC-TTC---TTHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhh---hhccCCCCCEEEECCcccH---HHHHHHH
Confidence 568999999999999998888877653 5444454332 2222246999998776554 3344444
No 307
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=25.54 E-value=3.3e+02 Score=23.69 Aligned_cols=68 Identities=18% Similarity=0.266 Sum_probs=43.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEE-ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTV-TNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHV 91 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~-as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I 91 (681)
+.+|..||-++...+..++.+...+..+.+ ..+..+.+..+......||+|+++.-.. .+--++++.+
T Consensus 63 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~~ 131 (171)
T 1ws6_A 63 GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA-MDLAALFGEL 131 (171)
T ss_dssp TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT-SCTTHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc-hhHHHHHHHH
Confidence 345999999999999998888766645543 4456555544443223599999985332 2333445554
No 308
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=25.30 E-value=51 Score=32.28 Aligned_cols=71 Identities=17% Similarity=0.263 Sum_probs=48.3
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHhc--CCCceEEEEeCCCCCCCHHHHHHHH
Q 005719 19 KFPIGMRVLAVDDDPTCLKVLENFLRACQY--EVT-VTNQAVTALKMLREN--RNNFDLVISDVHMPDMDGFKLLEHV 91 (681)
Q Consensus 19 ~fP~GmRVLIVDDD~~~r~iL~~~Le~~gy--~Vt-~as~a~eALe~L~e~--~~~pDLVLlDV~MPdmDG~elLe~I 91 (681)
.+|.+-+|..||-++...+..++.++..+. .|. ...++.+.+..+... ...||+|++|... .+-..+++.+
T Consensus 81 ~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~~--~~~~~~l~~~ 156 (242)
T 3r3h_A 81 ALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADK--TNYLNYYELA 156 (242)
T ss_dssp TSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESCG--GGHHHHHHHH
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCCh--HHhHHHHHHH
Confidence 355567999999999888888888887765 354 456777766655321 2469999999752 2334445554
No 309
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=25.29 E-value=82 Score=30.81 Aligned_cols=63 Identities=14% Similarity=0.253 Sum_probs=47.2
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 57 VTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 57 ~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
..+++.+... .||+| ++ ||+.-- ++++.++...++|||+=.--.+.+.+++|+++||+..-+-
T Consensus 117 ~~~~~~i~~~--~PD~i--Ei-LPGi~p-~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsTs 179 (192)
T 3kts_A 117 NKGVALIQKV--QPDCI--EL-LPGIIP-EQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTS 179 (192)
T ss_dssp HHHHHHHHHH--CCSEE--EE-ECTTCH-HHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEEC
T ss_pred HHHHHHHhhc--CCCEE--EE-CCchhH-HHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEeC
Confidence 3466666654 48877 22 577543 7888887778999998777789999999999999877553
No 310
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=25.15 E-value=1.4e+02 Score=30.62 Aligned_cols=58 Identities=22% Similarity=0.357 Sum_probs=38.9
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhC-----CCeEEE-ECCHHHHHHHHHhcCCCceEEEEeCCCC
Q 005719 20 FPIGMRVLAVDDDPTCLKVLENFLRAC-----QYEVTV-TNQAVTALKMLRENRNNFDLVISDVHMP 80 (681)
Q Consensus 20 fP~GmRVLIVDDD~~~r~iL~~~Le~~-----gy~Vt~-as~a~eALe~L~e~~~~pDLVLlDV~MP 80 (681)
.+...+|..||=++...+..++.+... .-+|.+ ..++.+.+.. ....||+|++|...|
T Consensus 129 ~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD~Ii~d~~~~ 192 (314)
T 2b2c_A 129 HESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN---HKNEFDVIITDSSDP 192 (314)
T ss_dssp CTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH---CTTCEEEEEECCC--
T ss_pred cCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh---cCCCceEEEEcCCCC
Confidence 344579999999999999998887543 224543 4556554433 335699999998544
No 311
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=25.08 E-value=2.7e+02 Score=27.79 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=32.7
Q ss_pred HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCC
Q 005719 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126 (681)
Q Consensus 85 ~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKP 126 (681)
.+.++.++...++||++=..-...+.+.+++..||+.+++--
T Consensus 194 ~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVGS 235 (268)
T 1qop_A 194 HHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGS 235 (268)
T ss_dssp HHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 577888876668897765555668889998999999987653
No 312
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=25.08 E-value=52 Score=31.87 Aligned_cols=102 Identities=19% Similarity=0.147 Sum_probs=0.0
Q ss_pred CCcEEEEEeCC---HHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-------HHHHHH
Q 005719 22 IGMRVLAVDDD---PTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGF-------KLLEHV 91 (681)
Q Consensus 22 ~GmRVLIVDDD---~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~-------elLe~I 91 (681)
.|...+.+.++ ......+.+.+++.|..+...-....-.+.+.......|.|+++-..|+..|. +.++.+
T Consensus 90 ~Gad~v~vh~~~~~~~~~~~~~~~~~~~g~~ig~~~~p~t~~e~~~~~~~~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l 169 (230)
T 1rpx_A 90 AGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDL 169 (230)
T ss_dssp TTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTTTTTCSEEEEESSCTTCSSCCCCTTHHHHHHHH
T ss_pred cCCCEEEEEecCccchhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCEEEEEEEcCCCCCccccHHHHHHHHHH
Q ss_pred hccC-----CCcEEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 92 GLEM-----DLPVIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 92 ~~~~-----dlPVImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
+... ++||++.-+-. .+.+.++++.||+.+.+
T Consensus 170 ~~~~~~~~~~~pi~v~GGI~-~~n~~~~~~aGad~vvv 206 (230)
T 1rpx_A 170 RKICAERGLNPWIEVDGGVG-PKNAYKVIEAGANALVA 206 (230)
T ss_dssp HHHHHHHTCCCEEEEESSCC-TTTHHHHHHHTCCEEEE
T ss_pred HHHHHhcCCCceEEEECCCC-HHHHHHHHHcCCCEEEE
No 313
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=24.97 E-value=4.4e+02 Score=27.55 Aligned_cols=43 Identities=23% Similarity=0.297 Sum_probs=28.8
Q ss_pred cCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 94 EMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 94 ~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
...+|+|++-...+... .++.| ..++..+ +.++|...+..++.
T Consensus 318 a~g~PvV~~~~~~~~~e---~v~~g-~~~lv~~-d~~~l~~ai~~ll~ 360 (403)
T 3ot5_A 318 GMGVPVLVLRDTTERPE---GIEAG-TLKLIGT-NKENLIKEALDLLD 360 (403)
T ss_dssp GTTCCEEECCSSCSCHH---HHHHT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred HhCCCEEEecCCCcchh---heeCC-cEEEcCC-CHHHHHHHHHHHHc
Confidence 35789987733333322 35677 4677665 89999999888874
No 314
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=24.97 E-value=2.8e+02 Score=29.10 Aligned_cols=92 Identities=9% Similarity=-0.026 Sum_probs=55.8
Q ss_pred EEEEEeCCHHHHHHHHHHH----HhCCCe--EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 005719 25 RVLAVDDDPTCLKVLENFL----RACQYE--VTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLP 98 (681)
Q Consensus 25 RVLIVDDD~~~r~iL~~~L----e~~gy~--Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlP 98 (681)
-|||-|.+-...-.+.+.+ +...+. .+.+.+..++.+.+.. ..|+|.+|- |+--++-+.++....-.
T Consensus 204 ~vlikdnHi~~~G~i~~Av~~ar~~~p~~kIeVEVdtldea~eAl~a---GaD~I~LDn----~~~~~l~~av~~l~~~v 276 (320)
T 3paj_A 204 AYLIKENHIIACGGIRQAISTAKQLNPGKPVEVETETLAELEEAISA---GADIIMLDN----FSLEMMREAVKINAGRA 276 (320)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEEES----CCHHHHHHHHHHHTTSS
T ss_pred hhccHHHHHHHhCCHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHc---CCCEEEECC----CCHHHHHHHHHHhCCCC
Confidence 3677766543332233333 233332 3468888888888873 489999996 33333322232222234
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEE
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYL 123 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYL 123 (681)
.|..|+.-+.+.+.+..+.|++.+-
T Consensus 277 ~ieaSGGIt~~~I~~~a~tGVD~is 301 (320)
T 3paj_A 277 ALENSGNITLDNLKECAETGVDYIS 301 (320)
T ss_dssp EEEEESSCCHHHHHHHHTTTCSEEE
T ss_pred eEEEECCCCHHHHHHHHHcCCCEEE
Confidence 5668888888999998899996664
No 315
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=24.96 E-value=2.7e+02 Score=26.57 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCCCeEEEECCH---H---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcC
Q 005719 36 LKVLENFLRACQYEVTVTNQA---V---TALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAY 105 (681)
Q Consensus 36 r~iL~~~Le~~gy~Vt~as~a---~---eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~ 105 (681)
...+++.+++.||.+.++... . +.++.+.. ..+|-||+-...+ -+.++.+. ...+|||++...
T Consensus 26 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~----~~~~~~l~-~~~iPvV~i~~~ 94 (276)
T 3jy6_A 26 FKGISSILESRGYIGVLFDANADIEREKTLLRAIGS--RGFDGLILQSFSN----PQTVQEIL-HQQMPVVSVDRE 94 (276)
T ss_dssp HHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHT--TTCSEEEEESSCC----HHHHHHHH-TTSSCEEEESCC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEecCCc----HHHHHHHH-HCCCCEEEEecc
Confidence 344555667789999877532 2 34455543 3588888754333 45566553 358999988543
No 316
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=24.71 E-value=5e+02 Score=25.38 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=38.2
Q ss_pred CCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCC--hHH----HHHHHhcCCcEEEe
Q 005719 68 NNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGD--TKL----VMKGITHGACDYLL 124 (681)
Q Consensus 68 ~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d--~e~----v~kAl~~GA~DYLl 124 (681)
...|+|.+.. + -+++.++.+....++|||+..+-.. .+. +.++++.||+.+..
T Consensus 178 ~Gad~i~~~~--~--~~~~~l~~i~~~~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~v 236 (273)
T 2qjg_A 178 LGADIVKTSY--T--GDIDSFRDVVKGCPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAV 236 (273)
T ss_dssp TTCSEEEECC--C--SSHHHHHHHHHHCSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEEC
T ss_pred cCCCEEEECC--C--CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 3579888874 2 4688888886556899999877663 444 66677899998754
No 317
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=24.67 E-value=1.5e+02 Score=30.65 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=39.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCe---EE-EECCHHHHHHHHHhcCCCceEEEEeC
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYE---VT-VTNQAVTALKMLRENRNNFDLVISDV 77 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~---Vt-~as~a~eALe~L~e~~~~pDLVLlDV 77 (681)
|.+|..||-++...+.+++-++..+.. +. +..++.+.+..+......||+||+|.
T Consensus 175 ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dP 233 (332)
T 2igt_A 175 GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDP 233 (332)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECC
Confidence 448999999999999999888766642 54 45567666654332234699999985
No 318
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=24.62 E-value=74 Score=26.50 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=33.8
Q ss_pred ccchhhHHHHHHHHHHhcCCCCChhhHHhh-cCCCCCcHHHHHHhhh
Q 005719 216 VWTPELHRKFVGAVNQLGVDKAVPKKILDL-MNVEGLTRENVASHLQ 261 (681)
Q Consensus 216 ~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~-m~v~glt~~~v~ShLq 261 (681)
.||.+=.++|.+|+..++ +.+|-+-..+ .-|+|-|.++|..|-+
T Consensus 10 ~WT~eE~k~fe~ALa~~~--~~tp~rWe~IA~~V~gKT~eE~~~hY~ 54 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLP--KHKPGFWSEVAAAVGSRSPEECQRKYM 54 (73)
T ss_dssp CCCHHHHHHHHHHHHHSC--SSSSSHHHHHHHHTTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC--CCCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 499999999999999876 4467655444 2478999999987433
No 319
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=24.61 E-value=3.3e+02 Score=28.20 Aligned_cols=89 Identities=12% Similarity=0.100 Sum_probs=58.1
Q ss_pred CCeEEE-ECCHHHHHHHHHhcCCCceEEEEeCCC--CC-CCHHHHHHHHhccCCCcEEEEEcCCCh-------------H
Q 005719 47 QYEVTV-TNQAVTALKMLRENRNNFDLVISDVHM--PD-MDGFKLLEHVGLEMDLPVIMLSAYGDT-------------K 109 (681)
Q Consensus 47 gy~Vt~-as~a~eALe~L~e~~~~pDLVLlDV~M--Pd-mDG~elLe~I~~~~dlPVImLSa~~d~-------------e 109 (681)
.+.+.+ +.+..+++.+.+.. .|-|=++-.+ ++ -.++.+++.++...++||.+|...... .
T Consensus 39 ~~~lEvc~~s~~~a~~A~~gG---AdRIELc~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~ 115 (287)
T 3iwp_A 39 GFLMEVCVDSVESAVNAERGG---ADRIELCSGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKA 115 (287)
T ss_dssp CSEEEEEESSHHHHHHHHHHT---CSEEEECBCGGGTCBCCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHhC---CCEEEECCCCCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHH
Confidence 455655 56777777777644 3444333333 33 247888988877678999888655443 5
Q ss_pred HHHHHHhcCCcEEEeCC------CChHHHHHHHHH
Q 005719 110 LVMKGITHGACDYLLKP------VRIEELKNIWQH 138 (681)
Q Consensus 110 ~v~kAl~~GA~DYLlKP------vs~eEL~~i~q~ 138 (681)
.+..+.++||+.++.-- ++.+.++.++..
T Consensus 116 dI~~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~ 150 (287)
T 3iwp_A 116 DIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAI 150 (287)
T ss_dssp HHHHHHHTTCSEEEECCBCTTSCBCHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeeeCCCCCcCHHHHHHHHHH
Confidence 77888899999998774 444555555543
No 320
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=24.17 E-value=4.8e+02 Score=27.61 Aligned_cols=87 Identities=11% Similarity=0.038 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhCCCeEEEE-----CCHHHHHHHHHhcCCCceEEEEeCCCCC---------------------CCHHHHH
Q 005719 35 CLKVLENFLRACQYEVTVT-----NQAVTALKMLRENRNNFDLVISDVHMPD---------------------MDGFKLL 88 (681)
Q Consensus 35 ~r~iL~~~Le~~gy~Vt~a-----s~a~eALe~L~e~~~~pDLVLlDV~MPd---------------------mDG~elL 88 (681)
..+.|+.+-+..+..|.+- .+..+|..+... .+|.|.++-+ .+ ....+.+
T Consensus 194 ~~~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~a---Gad~I~V~g~-GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L 269 (365)
T 3sr7_A 194 WKKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDL---GVKTVDISGR-GGTSFAYIENRRGGNRSYLNQWGQTTAQVL 269 (365)
T ss_dssp HHHHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHH---TCCEEECCCB-C--------------CGGGTTCSCBHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHc---CCCEEEEeCC-CCcccchhhccccccccccccccccHHHHH
Confidence 3355555555556666554 456666666543 3788877543 11 2233455
Q ss_pred HHHhc-cCCCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 89 EHVGL-EMDLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 89 e~I~~-~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
..++. ...+|||+-..-.....+.+++.+||+...+-
T Consensus 270 ~~v~~~~~~ipvia~GGI~~g~Dv~KaLalGAdaV~ig 307 (365)
T 3sr7_A 270 LNAQPLMDKVEILASGGIRHPLDIIKALVLGAKAVGLS 307 (365)
T ss_dssp HHHGGGTTTSEEEECSSCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 55532 24689998888889999999999999987654
No 321
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=24.10 E-value=1.6e+02 Score=31.26 Aligned_cols=63 Identities=11% Similarity=0.099 Sum_probs=39.6
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHHhCCCeEEEECC---------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH
Q 005719 24 MRVLAVDDDPT-----CLKVLENFLRACQYEVTVTNQ---------AVTALKMLRENRNNFDLVISDVHMPDMDGFKLLE 89 (681)
Q Consensus 24 mRVLIVDDD~~-----~r~iL~~~Le~~gy~Vt~as~---------a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe 89 (681)
-|||||-|+.. ..+.+.+.|++.|+.+.++.. ..++++.+++. .+|+||- .-+..-+++.+
T Consensus 44 ~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGsviD~AK 118 (407)
T 1vlj_A 44 RKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKE--KVEAVLG---VGGGSVVDSAK 118 (407)
T ss_dssp CEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHT--TCSEEEE---EESHHHHHHHH
T ss_pred CeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhc--CCCEEEE---eCChhHHHHHH
Confidence 58999988543 245566777777888776652 34555666554 4788874 23445566666
Q ss_pred HH
Q 005719 90 HV 91 (681)
Q Consensus 90 ~I 91 (681)
.+
T Consensus 119 ~i 120 (407)
T 1vlj_A 119 AV 120 (407)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 322
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=24.02 E-value=2.5e+02 Score=28.95 Aligned_cols=106 Identities=15% Similarity=0.111 Sum_probs=60.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECC--HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQ--AVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPV 99 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~--a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPV 99 (681)
..+||.||.--..-...+...+...+++++.+.+ ...+.++..+.. ..-+..| ++.+-..+++-+
T Consensus 25 ~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~--~~~~~~~-----------~~~ll~~~~vD~ 91 (361)
T 3u3x_A 25 DELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYA--DARRIAT-----------AEEILEDENIGL 91 (361)
T ss_dssp -CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSS--SCCEESC-----------HHHHHTCTTCCE
T ss_pred cCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcC--CCcccCC-----------HHHHhcCCCCCE
Confidence 3579999986544333444455556888774443 333333333221 0111211 222222344555
Q ss_pred EEEEcC--CChHHHHHHHhcCCcEEEeCCC--ChHHHHHHHHHHH
Q 005719 100 IMLSAY--GDTKLVMKGITHGACDYLLKPV--RIEELKNIWQHVI 140 (681)
Q Consensus 100 ImLSa~--~d~e~v~kAl~~GA~DYLlKPv--s~eEL~~i~q~Vl 140 (681)
|+++.. .-.+.+.+|+++|..=|+-||+ +.++.++++..+-
T Consensus 92 V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 136 (361)
T 3u3x_A 92 IVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQA 136 (361)
T ss_dssp EEECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 555443 3456788999999999999996 5678877777653
No 323
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=23.97 E-value=75 Score=30.91 Aligned_cols=56 Identities=13% Similarity=0.131 Sum_probs=37.9
Q ss_pred CceEEEEeCCCCCCC-------HHHHHHHHhccC-CCcEEEEEcCCChHHHHHHHhcCCcEEEeC
Q 005719 69 NFDLVISDVHMPDMD-------GFKLLEHVGLEM-DLPVIMLSAYGDTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 69 ~pDLVLlDV~MPdmD-------G~elLe~I~~~~-dlPVImLSa~~d~e~v~kAl~~GA~DYLlK 125 (681)
..|.|+++...|+.. +++.+++++... ++||++.-+-. .+.+.+++..||+.++.-
T Consensus 138 ~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~-~~ni~~~~~aGaD~vvvG 201 (228)
T 1h1y_A 138 PVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLG-PSTIDVAASAGANCIVAG 201 (228)
T ss_dssp CCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCS-TTTHHHHHHHTCCEEEES
T ss_pred CCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcC-HHHHHHHHHcCCCEEEEC
Confidence 379999987777533 355566665443 78877665544 366777888899988654
No 324
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=23.86 E-value=1.6e+02 Score=29.14 Aligned_cols=55 Identities=18% Similarity=0.071 Sum_probs=36.7
Q ss_pred CcEEEEEeCC--------------------HHHHHHHHHHHHhCCCeEEEECCHH-----------------HHHHHHHh
Q 005719 23 GMRVLAVDDD--------------------PTCLKVLENFLRACQYEVTVTNQAV-----------------TALKMLRE 65 (681)
Q Consensus 23 GmRVLIVDDD--------------------~~~r~iL~~~Le~~gy~Vt~as~a~-----------------eALe~L~e 65 (681)
.||||+|-.. ......+.+.|.+.||+|+++.... ...+.+++
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 82 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGRPGLTVVPAGEPEEIERWLRT 82 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCSTTEEECSCCSHHHHHHHHHH
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCCcceeccCCcHHHHHHHHHh
Confidence 3899999876 2345566777777899999886432 34445554
Q ss_pred cCCCceEEEEeCCC
Q 005719 66 NRNNFDLVISDVHM 79 (681)
Q Consensus 66 ~~~~pDLVLlDV~M 79 (681)
. .||+|++-...
T Consensus 83 ~--~~Dvi~~~~~~ 94 (342)
T 2iuy_A 83 A--DVDVVHDHSGG 94 (342)
T ss_dssp C--CCSEEEECSSS
T ss_pred c--CCCEEEECCch
Confidence 3 58988876544
No 325
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=23.83 E-value=92 Score=29.52 Aligned_cols=56 Identities=25% Similarity=0.249 Sum_probs=39.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCc-eEEEEeCC
Q 005719 21 PIGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNF-DLVISDVH 78 (681)
Q Consensus 21 P~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~p-DLVLlDV~ 78 (681)
..+++|||..-.--+...+.+.|.+.|++|+.+....+.++.+... .+ .++..|+.
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~--~~~~~~~~Dl~ 75 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRER--GASDIVVANLE 75 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHT--TCSEEEECCTT
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhC--CCceEEEcccH
Confidence 3589999999988888888777777799998776544444444432 36 77777876
No 326
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=23.56 E-value=4.2e+02 Score=26.77 Aligned_cols=105 Identities=14% Similarity=0.141 Sum_probs=58.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEE-ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTV-TNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIM 101 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~-as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVIm 101 (681)
.+||.||---..-...+..+.+.-+++++. +....+..+.+.+. +.+-..+ + ++.+-...++-+|+
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~---~g~~~~~------~----~~~~l~~~~~D~V~ 70 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEA---NGAEAVA------S----PDEVFARDDIDGIV 70 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHT---TTCEEES------S----HHHHTTCSCCCEEE
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH---cCCceeC------C----HHHHhcCCCCCEEE
Confidence 378999988665555444444433677764 44333433433322 2211111 1 22222223444554
Q ss_pred EEcC--CChHHHHHHHhcCCcEEEeCCC--ChHHHHHHHHHHH
Q 005719 102 LSAY--GDTKLVMKGITHGACDYLLKPV--RIEELKNIWQHVI 140 (681)
Q Consensus 102 LSa~--~d~e~v~kAl~~GA~DYLlKPv--s~eEL~~i~q~Vl 140 (681)
++.. ...+.+.+++++|..=|+-||+ +.++.++++..+-
T Consensus 71 i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~ 113 (344)
T 3euw_A 71 IGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIG 113 (344)
T ss_dssp ECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHG
T ss_pred EeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4433 3456778899999999999995 4567777666553
No 327
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=23.50 E-value=1.7e+02 Score=29.79 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=41.8
Q ss_pred HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEe--CCCChHHHHHHHHHHH
Q 005719 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLL--KPVRIEELKNIWQHVI 140 (681)
Q Consensus 85 ~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLl--KPvs~eEL~~i~q~Vl 140 (681)
++.++.++...++||+.---.-+...+..+...||+..++ .-++.+++...+..+.
T Consensus 102 ~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~ 159 (272)
T 3qja_A 102 LDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTE 159 (272)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHHH
Confidence 7788888777789998654444555689999999999987 4566777777766553
No 328
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=23.48 E-value=2.5e+02 Score=27.86 Aligned_cols=52 Identities=15% Similarity=0.120 Sum_probs=34.9
Q ss_pred CCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHH
Q 005719 82 MDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKN 134 (681)
Q Consensus 82 mDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~ 134 (681)
-++++.++.|+....-.+|-.....+.+.+.++++.||... .-|....++.+
T Consensus 49 ~~a~~~I~~l~~~~p~~~IGAGTVlt~~~a~~ai~AGA~fi-vsP~~~~evi~ 100 (217)
T 3lab_A 49 EAGLAAISAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQFI-VSPGLTPELIE 100 (217)
T ss_dssp TTHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSEE-EESSCCHHHHH
T ss_pred ccHHHHHHHHHHHCCCCeEeeccccCHHHHHHHHHcCCCEE-EeCCCcHHHHH
Confidence 35777777775444335666666678899999999999654 45655444443
No 329
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=23.39 E-value=1.8e+02 Score=29.78 Aligned_cols=58 Identities=14% Similarity=0.205 Sum_probs=42.3
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCC
Q 005719 69 NFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPV 127 (681)
Q Consensus 69 ~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPv 127 (681)
.||+||+=-=-|..-|-.-.+.+-...++|.|+++...... ...+++..-.+||+-+.
T Consensus 64 ~pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K-~kd~l~~~g~GYIivk~ 121 (283)
T 1qv9_A 64 EPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAPGLK-VKDEMEEQGLGYILVKP 121 (283)
T ss_dssp CCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEGGGGG-GHHHHHHTTCEEEEETT
T ss_pred CCCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcCCcchh-hHHHHHhcCCcEEEEec
Confidence 48888875555566788878777677899999999876555 55677766667766554
No 330
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=23.37 E-value=3.5e+02 Score=28.52 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCCH-HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 57 VTALKMLRENRNNFDLVISDVHMPDMDG-FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 57 ~eALe~L~e~~~~pDLVLlDV~MPdmDG-~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
.+.++.+.+. .+|+|.+|........ .+.++.++...++|||+= .....+.+.++.+.||+...+
T Consensus 107 ~e~a~~l~ea--Gad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg-~v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 107 IERAKLLVEA--GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVG-NVVTEEATKELIENGADGIKV 172 (361)
T ss_dssp HHHHHHHHHT--TCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHc--CcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEc-cCCCHHHHHHHHHcCcCEEEE
Confidence 4444444432 4899998875433322 466777765557888762 234577889999999988776
No 331
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=23.13 E-value=29 Score=29.18 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=34.4
Q ss_pred cccchhhHHHHHHHHHHhcCCCCChhhHHhhc-CCCCCcHHHHHHhhh
Q 005719 215 VVWTPELHRKFVGAVNQLGVDKAVPKKILDLM-NVEGLTRENVASHLQ 261 (681)
Q Consensus 215 ~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m-~v~glt~~~v~ShLq 261 (681)
-.||.+=.+.|..|+.... +-+|.+--++- -|||-|.+.|..|-|
T Consensus 21 ~~WT~eE~K~FE~ALa~yp--~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTN--KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSC--SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCC--CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 4699999999999998874 55676554443 367999999999865
No 332
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=23.11 E-value=80 Score=29.18 Aligned_cols=55 Identities=9% Similarity=0.076 Sum_probs=38.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPD 81 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPd 81 (681)
|||||..-.--+...+.+.|.+.|++|+.+....+.++.+. ....++..|+.-++
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~---~~~~~~~~D~~d~~ 55 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH---KDINILQKDIFDLT 55 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC---SSSEEEECCGGGCC
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc---CCCeEEeccccChh
Confidence 68999998777777777777777999987765444444432 34677777775444
No 333
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=23.03 E-value=59 Score=33.01 Aligned_cols=55 Identities=24% Similarity=0.437 Sum_probs=37.9
Q ss_pred HHHHHHHhccCCCcEEEEEcC------CChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 85 FKLLEHVGLEMDLPVIMLSAY------GDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 85 ~elLe~I~~~~dlPVImLSa~------~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
|++++.++. .+|+|+|+-. .-...+.+|.+.|++.+|+--+..+|... +...+++
T Consensus 79 ~~~~~~~r~--~~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~-~~~~~~~ 139 (252)
T 3tha_A 79 FELLARIKT--KKALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDD-LIKECER 139 (252)
T ss_dssp HHHHHHCCC--SSEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHH-HHHHHHH
T ss_pred HHHHHHHhc--CCCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHH-HHHHHHH
Confidence 444555543 3899999853 44567788999999999998887777444 4444443
No 334
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=22.96 E-value=79 Score=31.72 Aligned_cols=79 Identities=9% Similarity=0.070 Sum_probs=46.1
Q ss_pred CCCCcEEEEEeCCH-----HHHHHHHHHHHhCCCeEEEEC--CH---HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH
Q 005719 20 FPIGMRVLAVDDDP-----TCLKVLENFLRACQYEVTVTN--QA---VTALKMLRENRNNFDLVISDVHMPDMDGFKLLE 89 (681)
Q Consensus 20 fP~GmRVLIVDDD~-----~~r~iL~~~Le~~gy~Vt~as--~a---~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe 89 (681)
+|..-||.|+-+.. ...+.+++.+++.|++++... +. .++++.+. ...|+|++...-.....++.+.
T Consensus 137 ~P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~---~~~d~i~~~~d~~~~~~~~~i~ 213 (302)
T 3lkv_A 137 LPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIA---EKSDVIYALIDNTVASAIEGMI 213 (302)
T ss_dssp STTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHH---TTCSEEEECSCHHHHHTHHHHH
T ss_pred CCCCCEEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHhcc---CCeeEEEEeCCcchhhHHHHHH
Confidence 67777888875542 334556777777898877543 33 34444443 3579988754211122344444
Q ss_pred HHhccCCCcEEE
Q 005719 90 HVGLEMDLPVIM 101 (681)
Q Consensus 90 ~I~~~~dlPVIm 101 (681)
.+.....+||+.
T Consensus 214 ~~~~~~~iPv~~ 225 (302)
T 3lkv_A 214 VAANQAKTPVFG 225 (302)
T ss_dssp HHHHHTTCCEEE
T ss_pred HHHhhcCCceee
Confidence 455567788764
No 335
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=22.92 E-value=1.8e+02 Score=26.59 Aligned_cols=53 Identities=13% Similarity=0.068 Sum_probs=39.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDV 77 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV 77 (681)
.|.+|.++.... ....+.+.+...+..+..+.+..++++++... .+|+++.|.
T Consensus 110 ~g~~v~~~~g~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~ 162 (239)
T 1lst_A 110 KGKHVGVLQGST-QEAYANDNWRTKGVDVVAYANQDLIYSDLTAG--RLDAALQDE 162 (239)
T ss_dssp TTCEEEEETTSH-HHHHHHHHTGGGTCEEEEESSHHHHHHHHHTT--SCSEEEEEH
T ss_pred CCCEEEEEcCcc-HHHHHHHhcccCCCeEEEcCCHHHHHHHHHcC--CCCEEEeCc
Confidence 477888776654 34455565544578899999999999999854 499999973
No 336
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=22.88 E-value=1.5e+02 Score=31.18 Aligned_cols=63 Identities=16% Similarity=0.276 Sum_probs=40.5
Q ss_pred cEEEEEeCCHH------HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHH
Q 005719 24 MRVLAVDDDPT------CLKVLENFLRACQYEVTVTN---------QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLL 88 (681)
Q Consensus 24 mRVLIVDDD~~------~r~iL~~~Le~~gy~Vt~as---------~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elL 88 (681)
-|||||-|... ..+.+.+.|+..|+++.++. ...++++.+++. .+|+||- .-+..-+++.
T Consensus 34 ~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~d~IIa---vGGGsv~D~a 108 (387)
T 3bfj_A 34 KKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRRE--QCDIIVT---VGGGSPHDCG 108 (387)
T ss_dssp SEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHT--TCCEEEE---EESHHHHHHH
T ss_pred CEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhc--CCCEEEE---eCCcchhhHH
Confidence 58999988743 45667777887788876654 234566666654 4788774 2344455666
Q ss_pred HHH
Q 005719 89 EHV 91 (681)
Q Consensus 89 e~I 91 (681)
+.+
T Consensus 109 K~i 111 (387)
T 3bfj_A 109 KGI 111 (387)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 337
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=22.88 E-value=2.2e+02 Score=29.86 Aligned_cols=54 Identities=19% Similarity=0.388 Sum_probs=41.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---eEE-EECCHHHHHHHHHhcCCCceEEEEeC
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQY---EVT-VTNQAVTALKMLRENRNNFDLVISDV 77 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy---~Vt-~as~a~eALe~L~e~~~~pDLVLlDV 77 (681)
-+|..||-++...+..++-++..+. .+. ...++.+.+..+......||+|++|.
T Consensus 244 ~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dp 301 (396)
T 3c0k_A 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEECC
Confidence 4899999999999999998887776 454 56677777665543334699999995
No 338
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=22.83 E-value=1e+02 Score=30.78 Aligned_cols=58 Identities=19% Similarity=0.336 Sum_probs=39.4
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHh----C-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC
Q 005719 20 FPIGMRVLAVDDDPTCLKVLENFLRA----C-QYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMP 80 (681)
Q Consensus 20 fP~GmRVLIVDDD~~~r~iL~~~Le~----~-gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MP 80 (681)
.+...+|.+||=++...+..++.+.. . .-+|. ...++.+.+. .....||+|++|.-.|
T Consensus 96 ~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~---~~~~~fD~Ii~d~~~~ 159 (275)
T 1iy9_A 96 HPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIA---KSENQYDVIMVDSTEP 159 (275)
T ss_dssp CTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHH---TCCSCEEEEEESCSSC
T ss_pred CCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh---hCCCCeeEEEECCCCC
Confidence 33446999999999999999887743 1 22344 4556555443 3335699999998654
No 339
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=22.78 E-value=4.7e+02 Score=30.70 Aligned_cols=108 Identities=11% Similarity=0.227 Sum_probs=67.8
Q ss_pred cEEEEEeCCH----------HHHHHHHHHHHhCCC--eEEEEC---CH---HHHHHHHHhcCCCceEEEEeCCCCCCCHH
Q 005719 24 MRVLAVDDDP----------TCLKVLENFLRACQY--EVTVTN---QA---VTALKMLRENRNNFDLVISDVHMPDMDGF 85 (681)
Q Consensus 24 mRVLIVDDD~----------~~r~iL~~~Le~~gy--~Vt~as---~a---~eALe~L~e~~~~pDLVLlDV~MPdmDG~ 85 (681)
++++||.+.+ .....+.+++++.+. .|.... +. .+..+.+... .|++++-- ..+.-|+
T Consensus 604 v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~a---aDvfV~PS-~~Egfgl 679 (816)
T 3s28_A 604 ANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDT---KGAFVQPA-LYEAFGL 679 (816)
T ss_dssp CEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHHT---TCEEEECC-SCBSSCH
T ss_pred eEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHhc---CeEEEECC-CccCccH
Confidence 5677776655 255566666666553 455443 22 2333334321 46776633 2345577
Q ss_pred HHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHH
Q 005719 86 KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIR 141 (681)
Q Consensus 86 elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlr 141 (681)
.+++.+. ..+|||+- .... ..+.+..|.+.++..|-+.++|.+.+..++.
T Consensus 680 vllEAMA--~G~PVIas-d~GG---~~EiV~dg~~Gllv~p~D~e~LA~aI~~lL~ 729 (816)
T 3s28_A 680 TVVEAMT--CGLPTFAT-CKGG---PAEIIVHGKSGFHIDPYHGDQAADTLADFFT 729 (816)
T ss_dssp HHHHHHH--TTCCEEEE-SSBT---HHHHCCBTTTBEEECTTSHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCCEEEe-CCCC---hHHHHccCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 7777764 56898863 3333 3445678889999999999999999987764
No 340
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=22.72 E-value=1e+02 Score=32.89 Aligned_cols=100 Identities=21% Similarity=0.266 Sum_probs=61.8
Q ss_pred EEEEEe--CCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHH-------------------hcCCCceEEEEeCCCC
Q 005719 25 RVLAVD--DDPTC---LKVLENFLRACQYEVTVTNQAVTALKMLR-------------------ENRNNFDLVISDVHMP 80 (681)
Q Consensus 25 RVLIVD--DD~~~---r~iL~~~Le~~gy~Vt~as~a~eALe~L~-------------------e~~~~pDLVLlDV~MP 80 (681)
+|+||- .++.. ...|.++|.+.++.|.+-....+.+.... +....+|+||+ -
T Consensus 40 ~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlvI~----l 115 (365)
T 3pfn_A 40 SVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIIC----L 115 (365)
T ss_dssp EEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCSEEEE----E
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCCEEEE----E
Confidence 688884 33333 44556666677998877655444332221 01135788877 4
Q ss_pred CCCHH--HHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHHh
Q 005719 81 DMDGF--KLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRRK 143 (681)
Q Consensus 81 dmDG~--elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrrk 143 (681)
+.||. .+.+.+ ....+|||-+. .|-.+||. +++.+++...+..+++..
T Consensus 116 GGDGT~L~aa~~~-~~~~~PvlGiN-------------~G~LGFLt-~~~~~~~~~~l~~vl~g~ 165 (365)
T 3pfn_A 116 GGDGTLLYASSLF-QGSVPPVMAFH-------------LGSLGFLT-PFSFENFQSQVTQVIEGN 165 (365)
T ss_dssp SSTTHHHHHHHHC-SSSCCCEEEEE-------------SSSCTTTC-CEESTTHHHHHHHHHHSC
T ss_pred cChHHHHHHHHHh-ccCCCCEEEEc-------------CCCCccce-eecHHHHHHHHHHHHcCC
Confidence 77883 233332 33568988665 35566777 888899999999988653
No 341
>3cni_A Putative ABC type-2 transporter; structural genomics, thermotoga MARI PSI-2, protein structure initiative; 2.30A {Thermotoga maritima MSB8}
Probab=22.69 E-value=1.5e+02 Score=26.75 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=30.5
Q ss_pred CCCCcEEEEEeCCH-HHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHhcCCCceEEEE
Q 005719 20 FPIGMRVLAVDDDP-TCLKVLENFLRACQYEVT-VTNQAVTALKMLRENRNNFDLVIS 75 (681)
Q Consensus 20 fP~GmRVLIVDDD~-~~r~iL~~~Le~~gy~Vt-~as~a~eALe~L~e~~~~pDLVLl 75 (681)
-+..++|.|||.|. ...+.|.+.|. ....+. ...+..+|.+.++..+ ++.+|.
T Consensus 7 ~~~~~~vaVvd~D~s~~s~~l~~~l~-~~~~~~~~~~s~~ea~~~l~~g~--~~~~l~ 61 (156)
T 3cni_A 7 STVGQKVAIVREDTGTIAELAEKALG-NMVDIVYAGSDLKEAEEAVKKEK--APAIIV 61 (156)
T ss_dssp ----CEEEEEECCCSHHHHHHHHHHH-TSSEEEEEESCHHHHHHHHHHHT--CSEEEE
T ss_pred CCCCCcEEEEECCCCHHHHHHHHHhc-CcEEEEecCCCHHHHHHHHHcCC--eeEEEE
Confidence 35678999998654 33344555555 333322 1368899999998764 665554
No 342
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=22.69 E-value=3.9e+02 Score=23.37 Aligned_cols=73 Identities=14% Similarity=0.060 Sum_probs=47.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC-eEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQY-EVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPV 99 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy-~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPV 99 (681)
.+.+|..+|-++...+..++.++..+. .+. ...+..+. +.. ..||+|+++.- .+-.++++.+...++-.+
T Consensus 56 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---~~~--~~~D~i~~~~~---~~~~~~l~~~~~~~gG~l 127 (183)
T 2yxd_A 56 RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDV---LDK--LEFNKAFIGGT---KNIEKIIEILDKKKINHI 127 (183)
T ss_dssp TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHH---GGG--CCCSEEEECSC---SCHHHHHHHHHHTTCCEE
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCcccc---ccC--CCCcEEEECCc---ccHHHHHHHHhhCCCCEE
Confidence 457999999999999999998887664 344 34555552 222 36999999765 455667777643333334
Q ss_pred EEE
Q 005719 100 IML 102 (681)
Q Consensus 100 ImL 102 (681)
++.
T Consensus 128 ~~~ 130 (183)
T 2yxd_A 128 VAN 130 (183)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
No 343
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=22.67 E-value=3.2e+02 Score=28.54 Aligned_cols=68 Identities=9% Similarity=0.069 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCC------CCCC--HHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEE
Q 005719 56 AVTALKMLRENRNNFDLVISDVHM------PDMD--GFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYL 123 (681)
Q Consensus 56 a~eALe~L~e~~~~pDLVLlDV~M------PdmD--G~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYL 123 (681)
..+++++++.-...+|+|-+.... +... -+++++.|+...++|||......+.+.+.++++.|.+|++
T Consensus 229 ~~~~~~~a~~l~~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V 304 (343)
T 3kru_A 229 IDMMVEYINMIKDKVDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRCNIKTSAVGLITTQELAEEILSNERADLV 304 (343)
T ss_dssp HHHHHHHHHHHTTTCSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCEEEEESSCCCHHHHHHHHHTTSCSEE
T ss_pred HHHHHHHHHHhhccccEEeccCCceEeeeecccCceeehHHHHHHHhcCcccceeeeeeHHHHHHHHHhchhhHHH
Confidence 456666554322226666553211 1122 3567777776667999988877889999999999966654
No 344
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=22.32 E-value=91 Score=31.85 Aligned_cols=34 Identities=18% Similarity=0.413 Sum_probs=25.8
Q ss_pred hHHHHHHHhcCCcEEEeCCCC--hHHHHHHHHHHHH
Q 005719 108 TKLVMKGITHGACDYLLKPVR--IEELKNIWQHVIR 141 (681)
Q Consensus 108 ~e~v~kAl~~GA~DYLlKPvs--~eEL~~i~q~Vlr 141 (681)
.+.+.+|+++|..=|+-||+. .++.+++++.+-+
T Consensus 81 ~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 116 (337)
T 3ip3_A 81 GKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQK 116 (337)
T ss_dssp HHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 456778899999999999975 4677777776544
No 345
>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A*
Probab=22.25 E-value=1.8e+02 Score=30.78 Aligned_cols=76 Identities=9% Similarity=-0.006 Sum_probs=52.2
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-----CCCcEEEEEcCCChHHHHHHHhcCCcEE-EeCCCC
Q 005719 55 QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLE-----MDLPVIMLSAYGDTKLVMKGITHGACDY-LLKPVR 128 (681)
Q Consensus 55 ~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~-----~dlPVImLSa~~d~e~v~kAl~~GA~DY-LlKPvs 128 (681)
+..+|+++++.- ..+++..++-=++ +-++.++.|+.. ..+||+.-- ..+.....++++.|++|+ .+||..
T Consensus 213 ~~~~ai~~~~~l-~~~~i~~iE~P~~--~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~ik~~~ 288 (392)
T 3p3b_A 213 NLNLTKEVLAAL-SDVNLYWLEEAFH--EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGRVDVLQYDIIW 288 (392)
T ss_dssp CHHHHHHHHHHT-TTSCEEEEECSSS--CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTSCCEECCBTTT
T ss_pred CHHHHHHHHHHH-HhcCCCEEecCCc--ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCCCCEEEeCccc
Confidence 567888888764 3578888876566 446666666554 578877655 556677888899997765 567876
Q ss_pred hHHHHHH
Q 005719 129 IEELKNI 135 (681)
Q Consensus 129 ~eEL~~i 135 (681)
. -|.+.
T Consensus 289 ~-Git~~ 294 (392)
T 3p3b_A 289 P-GFTHW 294 (392)
T ss_dssp B-CHHHH
T ss_pred c-CHHHH
Confidence 5 44443
No 346
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=22.12 E-value=1.9e+02 Score=29.47 Aligned_cols=72 Identities=29% Similarity=0.315 Sum_probs=0.0
Q ss_pred cEEEEEeCC----HHHHHHHHHHHHhCCCeEEEECCHH------------------------------------------
Q 005719 24 MRVLAVDDD----PTCLKVLENFLRACQYEVTVTNQAV------------------------------------------ 57 (681)
Q Consensus 24 mRVLIVDDD----~~~r~iL~~~Le~~gy~Vt~as~a~------------------------------------------ 57 (681)
||||++-.. ..-...|.+.|.+.|++|+++....
T Consensus 16 MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (398)
T 4fzr_A 16 MRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGAGLPFAPTCPSLDMPEVLSWDREGNRTTMPREEKP 95 (398)
T ss_dssp CEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHHTTCCEEEEESSCCHHHHHSBCTTSCBCCCCSSHHH
T ss_pred eEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhCCCeeEecCCccchHhhhhhhccCcccccccchhh
Q ss_pred ------------------HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEE
Q 005719 58 ------------------TALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLS 103 (681)
Q Consensus 58 ------------------eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLS 103 (681)
+..+.+++.+ ||+|+.|. ...-|.-+.+.++ +|+|.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~--pDlVv~d~--~~~~~~~~a~~~g----iP~v~~~ 151 (398)
T 4fzr_A 96 LLEHIGRGYGRLVLRMRDEALALAERWK--PDLVLTET--YSLTGPLVAATLG----IPWIEQS 151 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CSEEEEET--TCTHHHHHHHHHT----CCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCEEEECc--cccHHHHHHHhhC----CCEEEec
No 347
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=21.97 E-value=1.8e+02 Score=31.08 Aligned_cols=87 Identities=10% Similarity=0.094 Sum_probs=56.4
Q ss_pred HHHHHHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHhcc--CCCcEEEEEcCC
Q 005719 36 LKVLENFLRACQYEVTV--TNQAVTALKMLRENRNNFDLVISDVHMP-----DMDGFKLLEHVGLE--MDLPVIMLSAYG 106 (681)
Q Consensus 36 r~iL~~~Le~~gy~Vt~--as~a~eALe~L~e~~~~pDLVLlDV~MP-----dmDG~elLe~I~~~--~dlPVImLSa~~ 106 (681)
.+.++.+-+..+..|.+ +.+..+|..+.. ..+|.|++.-+-. +..-++++..+... .++|||+-..-.
T Consensus 241 ~~~i~~lr~~~~~PvivKgv~~~e~A~~a~~---aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~~~ipVia~GGI~ 317 (392)
T 2nzl_A 241 WEDIKWLRRLTSLPIVAKGILRGDDAREAVK---HGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVR 317 (392)
T ss_dssp HHHHHHHC--CCSCEEEEEECCHHHHHHHHH---TTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHTTSSEEEECSSCC
T ss_pred HHHHHHHHHhhCCCEEEEecCCHHHHHHHHH---cCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcCCCCEEEEECCCC
Confidence 33444444444544543 567777766664 3489888854321 22356777666422 369999988889
Q ss_pred ChHHHHHHHhcCCcEEEeC
Q 005719 107 DTKLVMKGITHGACDYLLK 125 (681)
Q Consensus 107 d~e~v~kAl~~GA~DYLlK 125 (681)
....+.+++..||+...+-
T Consensus 318 ~g~Dv~kalalGAd~V~iG 336 (392)
T 2nzl_A 318 KGTDVLKALALGAKAVFVG 336 (392)
T ss_dssp SHHHHHHHHHTTCSEEEEC
T ss_pred CHHHHHHHHHhCCCeeEEC
Confidence 9999999999999987654
No 348
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=21.97 E-value=2.3e+02 Score=27.39 Aligned_cols=63 Identities=13% Similarity=0.114 Sum_probs=38.6
Q ss_pred HHHHHHHHHhCCCeEEEECC-----HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcC
Q 005719 36 LKVLENFLRACQYEVTVTNQ-----AVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAY 105 (681)
Q Consensus 36 r~iL~~~Le~~gy~Vt~as~-----a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~ 105 (681)
...+++.+++.||.+.++.. ..+.++.+.. ..+|-||+-.... +. +.++.+.. .+|||++...
T Consensus 30 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~--~~-~~~~~~~~--~iPvV~i~~~ 97 (289)
T 3k9c_A 30 VEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMR--ERCEAAILLGTRF--DT-DELGALAD--RVPALVVARA 97 (289)
T ss_dssp HHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTT--TTEEEEEEETCCC--CH-HHHHHHHT--TSCEEEESSC
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHh--CCCCEEEEECCCC--CH-HHHHHHHc--CCCEEEEcCC
Confidence 34455667778999887642 3445555543 3588887754322 22 56666643 8999988654
No 349
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=21.95 E-value=5.6e+02 Score=26.09 Aligned_cols=105 Identities=12% Similarity=0.046 Sum_probs=60.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCeEEEE-C-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRAC-QYEVTVT-N-QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPV 99 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~-gy~Vt~a-s-~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPV 99 (681)
.+||.||.--..-...+...|... +++++.+ . +...+.++..+.. +..+ .| ++.+-...++-+
T Consensus 27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g--~~~~-~~-----------~~~ll~~~~~D~ 92 (350)
T 3rc1_A 27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFG--GEPV-EG-----------YPALLERDDVDA 92 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHC--SEEE-ES-----------HHHHHTCTTCSE
T ss_pred ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcC--CCCc-CC-----------HHHHhcCCCCCE
Confidence 379999998777663333444444 6777633 3 3333443333221 2221 22 122212234445
Q ss_pred EEEEc--CCChHHHHHHHhcCCcEEEeCCC--ChHHHHHHHHHHHH
Q 005719 100 IMLSA--YGDTKLVMKGITHGACDYLLKPV--RIEELKNIWQHVIR 141 (681)
Q Consensus 100 ImLSa--~~d~e~v~kAl~~GA~DYLlKPv--s~eEL~~i~q~Vlr 141 (681)
|+++. ....+.+.+++++|..=|+-||+ +.++.+++++.+-+
T Consensus 93 V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~ 138 (350)
T 3rc1_A 93 VYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARE 138 (350)
T ss_dssp EEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 55543 34556788999999999999996 56788777776543
No 350
>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2
Probab=21.91 E-value=4.3e+02 Score=24.68 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=38.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCC
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVH 78 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~ 78 (681)
.+.+|||..-..-+...+.+.|.+.|++|..+....+.++.+........++.+|+.
T Consensus 6 ~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~ 62 (244)
T 1cyd_A 6 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLG 62 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTT
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCCcEEecCC
Confidence 467899999988888888888888899998766444444433322223566655653
No 351
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.88 E-value=1.7e+02 Score=22.81 Aligned_cols=51 Identities=20% Similarity=0.116 Sum_probs=36.7
Q ss_pred CCCccccchhhHHHHHHHHHHhcCCCCChhhHHhhcCCCCCcHHHHHHhhhhhHhhhcc
Q 005719 211 KKPRVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFRLYLKR 269 (681)
Q Consensus 211 kk~r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~v~glt~~~v~ShLqkyr~~l~~ 269 (681)
++..-.||++=|+.|++++.+.| | -=.+|.+. |++-|..+|.. .|-+..|+
T Consensus 9 r~~~~~WT~eE~~~F~~~~~~~g--k-~w~~Ia~~--l~~rt~~~~v~---~Yy~~Kk~ 59 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFIQHP--K-NFGLIASY--LERKSVPDCVL---YYYLTKKN 59 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHHHST--T-CHHHHHHH--CTTSCHHHHHH---HHHHHTCC
T ss_pred cccCCCCCHHHHHHHHHHHHHhC--C-CHHHHHHH--cCCCCHHHHHH---HHHHhcCC
Confidence 34566899999999999999998 2 23566655 57888888765 45555443
No 352
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=21.82 E-value=2.4e+02 Score=28.55 Aligned_cols=32 Identities=25% Similarity=0.268 Sum_probs=23.0
Q ss_pred CcEEEEEeCC---------HHHHHHHHHHHHhCCCeEEEEC
Q 005719 23 GMRVLAVDDD---------PTCLKVLENFLRACQYEVTVTN 54 (681)
Q Consensus 23 GmRVLIVDDD---------~~~r~iL~~~Le~~gy~Vt~as 54 (681)
.||||+|-.. ......|.+.|.+.||+|+++.
T Consensus 2 ~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~ 42 (439)
T 3fro_A 2 HMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFT 42 (439)
T ss_dssp CCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4899999755 1245567777778899998765
No 353
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=21.79 E-value=4.5e+02 Score=23.75 Aligned_cols=41 Identities=15% Similarity=-0.172 Sum_probs=25.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC-CCeEEEECCHHHHHHHH
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRAC-QYEVTVTNQAVTALKML 63 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~-gy~Vt~as~a~eALe~L 63 (681)
.+.+|+|+.--. +...+.+.|.+. |++|+.+..-.+.++.+
T Consensus 38 ~~~~v~IiG~G~-~G~~~a~~L~~~~g~~V~vid~~~~~~~~~ 79 (183)
T 3c85_A 38 GHAQVLILGMGR-IGTGAYDELRARYGKISLGIEIREEAAQQH 79 (183)
T ss_dssp TTCSEEEECCSH-HHHHHHHHHHHHHCSCEEEEESCHHHHHHH
T ss_pred CCCcEEEECCCH-HHHHHHHHHHhccCCeEEEEECCHHHHHHH
Confidence 356899987654 455555666666 88888776544444433
No 354
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=21.72 E-value=1.5e+02 Score=26.38 Aligned_cols=48 Identities=27% Similarity=0.408 Sum_probs=37.6
Q ss_pred ccccchhhHHHHHHHHHHhcCCCCChhhHHhhcCCCCCcHHHHHHhhhhhHhhhcc
Q 005719 214 RVVWTPELHRKFVGAVNQLGVDKAVPKKILDLMNVEGLTRENVASHLQKFRLYLKR 269 (681)
Q Consensus 214 r~~Wt~eLh~~F~~av~~lG~~ka~Pk~il~~m~v~glt~~~v~ShLqkyr~~l~~ 269 (681)
+-.||+|=...++++|.++|.. =..|.+.| ||-|..+|+. +|+.++||
T Consensus 79 ~~~WT~eEd~~L~~~~~~~G~~---W~~Ia~~l--~gRt~~~~k~---r~~~~~~~ 126 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRLGNR---WAEIAKLL--PGRTDNAVKN---HWNSTMRR 126 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHHCSC---HHHHGGGS--TTCCHHHHHH---HHHTTTTC
T ss_pred cccCCHHHHHHHHHHHHHHCcC---HHHHHHHC--CCCCHHHHHH---HHHHHHhc
Confidence 4469999999999999999932 24666654 8999999998 56666665
No 355
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=21.72 E-value=4.6e+02 Score=26.32 Aligned_cols=105 Identities=8% Similarity=0.131 Sum_probs=57.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHH-HhCCCeEEE-ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFL-RACQYEVTV-TNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVI 100 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~L-e~~gy~Vt~-as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVI 100 (681)
.+||.||---..-...+..+. +..+++++. +....+..+.+.+.- ..+-+..| -- +.+. ..++-+|
T Consensus 8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~-g~~~~~~~-------~~---~~l~-~~~~D~V 75 (346)
T 3cea_A 8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNEL-GVETTYTN-------YK---DMID-TENIDAI 75 (346)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTT-CCSEEESC-------HH---HHHT-TSCCSEE
T ss_pred cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHh-CCCcccCC-------HH---HHhc-CCCCCEE
Confidence 479999987655444444444 224677654 443344444433321 12222222 11 2222 2344555
Q ss_pred EEEcC--CChHHHHHHHhcCCcEEEeCCCC--hHHHHHHHHHH
Q 005719 101 MLSAY--GDTKLVMKGITHGACDYLLKPVR--IEELKNIWQHV 139 (681)
Q Consensus 101 mLSa~--~d~e~v~kAl~~GA~DYLlKPvs--~eEL~~i~q~V 139 (681)
+++.. ...+.+.++++.|..=|+-||+. .++.+++++.+
T Consensus 76 ~i~tp~~~h~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a 118 (346)
T 3cea_A 76 FIVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVI 118 (346)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHH
T ss_pred EEeCChHhHHHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 55443 34567888999998888889964 66766666554
No 356
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=21.70 E-value=2.6e+02 Score=29.16 Aligned_cols=55 Identities=29% Similarity=0.341 Sum_probs=41.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCe-E-EEECCHHHHHHHHHhcCCCceEEEEeC
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYE-V-TVTNQAVTALKMLRENRNNFDLVISDV 77 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~-V-t~as~a~eALe~L~e~~~~pDLVLlDV 77 (681)
+.+|..||-++...+..++-++..+.. + ....++.+.+..+......||+|++|.
T Consensus 231 ~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 231 FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 357999999999999999988876653 4 456677777665543345699999985
No 357
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=21.66 E-value=3.3e+02 Score=27.57 Aligned_cols=108 Identities=9% Similarity=0.043 Sum_probs=63.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC-CCeEEEECC--HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 005719 21 PIGMRVLAVDDDPTCLKVLENFLRAC-QYEVTVTNQ--AVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDL 97 (681)
Q Consensus 21 P~GmRVLIVDDD~~~r~iL~~~Le~~-gy~Vt~as~--a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dl 97 (681)
-..|||-||---..-+.-+...+... +++++.+.+ ...|-++..+.. +.-++.|+ -++ | ...++
T Consensus 21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g--~~~~y~d~-------~el---l-~~~~i 87 (350)
T 4had_A 21 QSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFS--VPHAFGSY-------EEM---L-ASDVI 87 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHT--CSEEESSH-------HHH---H-HCSSC
T ss_pred cCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC--CCeeeCCH-------HHH---h-cCCCC
Confidence 34579999998776655555555554 667764433 333444433321 22233331 122 2 23445
Q ss_pred cEEEEEcC--CChHHHHHHHhcCCcEEEeCCC--ChHHHHHHHHHHHH
Q 005719 98 PVIMLSAY--GDTKLVMKGITHGACDYLLKPV--RIEELKNIWQHVIR 141 (681)
Q Consensus 98 PVImLSa~--~d~e~v~kAl~~GA~DYLlKPv--s~eEL~~i~q~Vlr 141 (681)
-+|+++.. .-.+.+.+|+++|-.=|+-||+ +.+|.+++++.+-+
T Consensus 88 DaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 135 (350)
T 4had_A 88 DAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDR 135 (350)
T ss_dssp SEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHH
T ss_pred CEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHH
Confidence 55555444 3457889999999999999996 45677777765533
No 358
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=21.65 E-value=1.2e+02 Score=31.74 Aligned_cols=64 Identities=20% Similarity=0.391 Sum_probs=39.4
Q ss_pred CcEEEEEeCCHH-----HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHH
Q 005719 23 GMRVLAVDDDPT-----CLKVLENFLRACQYEVTVTN---------QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLL 88 (681)
Q Consensus 23 GmRVLIVDDD~~-----~r~iL~~~Le~~gy~Vt~as---------~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elL 88 (681)
|-|||||-|... ..+.+.+.|+..|+++.++. ...++++.+++. .+|+||- .-+..-+++.
T Consensus 40 g~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~d~IIa---vGGGsv~D~A 114 (371)
T 1o2d_A 40 GKRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRND--SFDFVVG---LGGGSPMDFA 114 (371)
T ss_dssp CSEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTS--CCSEEEE---EESHHHHHHH
T ss_pred CCEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhc--CCCEEEE---eCChHHHHHH
Confidence 358999987733 45677788887787766543 223455555433 5788874 2344445666
Q ss_pred HHH
Q 005719 89 EHV 91 (681)
Q Consensus 89 e~I 91 (681)
+.+
T Consensus 115 K~i 117 (371)
T 1o2d_A 115 KAV 117 (371)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 359
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=21.58 E-value=2e+02 Score=24.52 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=34.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHH
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLR 64 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~ 64 (681)
+-||||..|....+..++|.++...++.++....+.-..+.
T Consensus 3 lyvliisndkklieearkmaekanlelrtvktedelkkyle 43 (110)
T 2kpo_A 3 LYVLIISNDKKLIEEARKMAEKANLELRTVKTEDELKKYLE 43 (110)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHTCEEEECCSHHHHHHHHH
T ss_pred EEEEEEcCcHHHHHHHHHHHHhcCceeeeeccHHHHHHHHH
Confidence 46899999999999999999998999999888777655554
No 360
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=21.54 E-value=1.7e+02 Score=31.66 Aligned_cols=55 Identities=20% Similarity=0.123 Sum_probs=33.1
Q ss_pred CCCcEEEEEeCCH---HHHHHHHHHHHhCCCeEEEECC---H----HHHHHHHHhcCCCceEEEEeC
Q 005719 21 PIGMRVLAVDDDP---TCLKVLENFLRACQYEVTVTNQ---A----VTALKMLRENRNNFDLVISDV 77 (681)
Q Consensus 21 P~GmRVLIVDDD~---~~r~iL~~~Le~~gy~Vt~as~---a----~eALe~L~e~~~~pDLVLlDV 77 (681)
+.|.+|++++-|. .....+..+-+..+..+..... . .++++.++. ..+|+||+|.
T Consensus 124 ~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~~--~~~DvVIIDT 188 (425)
T 2ffh_A 124 GKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL--EARDLILVDT 188 (425)
T ss_dssp TTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHH--TTCSEEEEEC
T ss_pred HcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHHH--CCCCEEEEcC
Confidence 3477999999884 3333344444555777766532 2 233443322 4599999996
No 361
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=21.52 E-value=1.1e+02 Score=31.20 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=32.1
Q ss_pred CCcEEEEEeCCH---HHHHHHHHHHHhCCCeEEEEC---CHH----HHHHHHHhcCCCceEEEEeC
Q 005719 22 IGMRVLAVDDDP---TCLKVLENFLRACQYEVTVTN---QAV----TALKMLRENRNNFDLVISDV 77 (681)
Q Consensus 22 ~GmRVLIVDDD~---~~r~iL~~~Le~~gy~Vt~as---~a~----eALe~L~e~~~~pDLVLlDV 77 (681)
.|.+|+++|.|. .....+..+.++.+..+.... +.. ++++.++. ..+|+||+|.
T Consensus 125 ~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~--~~~D~ViIDT 188 (297)
T 1j8m_F 125 KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLS--EKMEIIIVDT 188 (297)
T ss_dssp TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHH--TTCSEEEEEC
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHh--CCCCEEEEeC
Confidence 366899998883 344445555555566665432 232 33444432 3589999998
No 362
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=21.46 E-value=1.9e+02 Score=27.92 Aligned_cols=67 Identities=18% Similarity=0.377 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCC----CCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhc-----C-CcEEE
Q 005719 55 QAVTALKMLRENRNNFD-LVISDVH----MPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITH-----G-ACDYL 123 (681)
Q Consensus 55 ~a~eALe~L~e~~~~pD-LVLlDV~----MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~-----G-A~DYL 123 (681)
+..+..+.+.+.. ++ +++.++. +.+.| +++++.+....++|||....-...+.+.++++. | |+..+
T Consensus 145 ~~~e~~~~~~~~G--~~~i~~t~~~~~g~~~g~~-~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~ 221 (241)
T 1qo2_A 145 DPVSLLKRLKEYG--LEEIVHTEIEKDGTLQEHD-FSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVI 221 (241)
T ss_dssp CHHHHHHHHHTTT--CCEEEEEETTHHHHTCCCC-HHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CHHHHHHHHHhCC--CCEEEEEeecccccCCcCC-HHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEE
Q ss_pred e
Q 005719 124 L 124 (681)
Q Consensus 124 l 124 (681)
+
T Consensus 222 v 222 (241)
T 1qo2_A 222 V 222 (241)
T ss_dssp E
T ss_pred e
No 363
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=21.42 E-value=1.9e+02 Score=29.37 Aligned_cols=96 Identities=13% Similarity=0.102 Sum_probs=53.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEE-EEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCH---------HHHHHHHhc
Q 005719 26 VLAVDDDPTCLKVLENFLRACQYEVT-VTN--QAVTALKMLRENRNNFDLVISDVHMPDMDG---------FKLLEHVGL 93 (681)
Q Consensus 26 VLIVDDD~~~r~iL~~~Le~~gy~Vt-~as--~a~eALe~L~e~~~~pDLVLlDV~MPdmDG---------~elLe~I~~ 93 (681)
|++.|-.......+.+.+++.|..+. .+. +..+-++.+......|+ ++. .+.+..| .+++++++.
T Consensus 123 viv~Dl~~ee~~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~~~gfi--y~v-s~~G~TG~~~~~~~~~~~~v~~vr~ 199 (271)
T 1ujp_A 123 VILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFV--YAV-SVTGVTGMRERLPEEVKDLVRRIKA 199 (271)
T ss_dssp EECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSCE--EEE-CC------------CCHHHHHHHHT
T ss_pred EEecCCCHHHHHHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHhCCCCE--EEE-ecCcccCCCCCCCccHHHHHHHHHh
Confidence 34444333334445555666565433 232 22334444444444454 332 2332222 478888877
Q ss_pred cCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCC
Q 005719 94 EMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP 126 (681)
Q Consensus 94 ~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKP 126 (681)
..++||++=..-.+.+.+.+. .||+..++--
T Consensus 200 ~~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGS 230 (271)
T 1ujp_A 200 RTALPVAVGFGVSGKATAAQA--AVADGVVVGS 230 (271)
T ss_dssp TCCSCEEEESCCCSHHHHHHH--TTSSEEEECH
T ss_pred hcCCCEEEEcCCCCHHHHHHh--cCCCEEEECh
Confidence 678998877777778888875 9999998753
No 364
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=21.42 E-value=94 Score=35.66 Aligned_cols=89 Identities=16% Similarity=0.218 Sum_probs=54.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEe--CCCCCCCH---HH-HHHHHh--c
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISD--VHMPDMDG---FK-LLEHVG--L 93 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlD--V~MPdmDG---~e-lLe~I~--~ 93 (681)
.|++|+|||....+...|...|+..|+.|+++..... .+ ...+|.||+- ...|...+ ++ +.+.|+ .
T Consensus 445 ~Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~-~~-----~~~~DgIIlsGGPg~p~d~~~p~i~~~~~lI~~a~ 518 (645)
T 3r75_A 445 SGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA-VD-----LARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLI 518 (645)
T ss_dssp TTCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCC-CC-----GGGCSEEEECCCSSCTTCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCc-cc-----ccCCCEEEECCCCCChhhhhhhhHHHHHHHHHHHH
Confidence 5789999999988889999999999998887743221 11 1247888872 22233223 22 122222 1
Q ss_pred cCCCcEEEEEcCCChHHHHHHHhcCCc
Q 005719 94 EMDLPVIMLSAYGDTKLVMKGITHGAC 120 (681)
Q Consensus 94 ~~dlPVImLSa~~d~e~v~kAl~~GA~ 120 (681)
..++||+-|+- ....-+...|..
T Consensus 519 ~~~iPiLGICl----G~QlLa~alGG~ 541 (645)
T 3r75_A 519 DEGKPFMAVCL----SHQILNAILGIP 541 (645)
T ss_dssp HHTCCEEEETH----HHHHHHHHTTCC
T ss_pred HCCCCEEEECH----HHHHHHHHhCCE
Confidence 34789988863 333334455654
No 365
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=21.39 E-value=1.5e+02 Score=30.10 Aligned_cols=38 Identities=24% Similarity=0.155 Sum_probs=23.8
Q ss_pred CCCCCCcEEEEEeC----CHHHHHHHHHHHHhCCCeEEEECC
Q 005719 18 DKFPIGMRVLAVDD----DPTCLKVLENFLRACQYEVTVTNQ 55 (681)
Q Consensus 18 ~~fP~GmRVLIVDD----D~~~r~iL~~~Le~~gy~Vt~as~ 55 (681)
..+...||||++-- +-.-...|.+.|.+.|++|++++.
T Consensus 17 ~~~~~~MRIL~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~ 58 (400)
T 4amg_A 17 NLYFQSMRALFITSPGLSHILPTVPLAQALRALGHEVRYATG 58 (400)
T ss_dssp ----CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEC
T ss_pred cCCCCCCeEEEECCCchhHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 55777899999843 222233467777778999998764
No 366
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=21.38 E-value=4.1e+02 Score=26.71 Aligned_cols=105 Identities=9% Similarity=0.077 Sum_probs=58.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCeEEE-ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQYEVTV-TNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIM 101 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy~Vt~-as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVIm 101 (681)
.+||.||---..-...+..+.+..+++++. +....+..+.+.+. +.+-.. +--++++ ..++-+|+
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~---~~~~~~-------~~~~~l~----~~~~D~V~ 68 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGA---YGCEVR-------TIDAIEA----AADIDAVV 68 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH---TTCEEC-------CHHHHHH----CTTCCEEE
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHH---hCCCcC-------CHHHHhc----CCCCCEEE
Confidence 368888887665554444444334677764 44333333333322 222111 2222222 23444554
Q ss_pred EEcC--CChHHHHHHHhcCCcEEEeCCC--ChHHHHHHHHHHHH
Q 005719 102 LSAY--GDTKLVMKGITHGACDYLLKPV--RIEELKNIWQHVIR 141 (681)
Q Consensus 102 LSa~--~d~e~v~kAl~~GA~DYLlKPv--s~eEL~~i~q~Vlr 141 (681)
++.. ...+.+.++++.|..=|+-||+ +.++.++++..+-+
T Consensus 69 i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~ 112 (331)
T 4hkt_A 69 ICTPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSD 112 (331)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred EeCCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHH
Confidence 4433 3456778899999999999994 56777777766543
No 367
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=21.28 E-value=4.2e+02 Score=27.47 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=31.2
Q ss_pred HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEE
Q 005719 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDY 122 (681)
Q Consensus 85 ~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DY 122 (681)
+++++.|+...++|||......+.+.+.++++.|.+|+
T Consensus 266 ~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~ 303 (340)
T 3gr7_A 266 VPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADL 303 (340)
T ss_dssp HHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSE
T ss_pred HHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeE
Confidence 57788887667899998888788999999999995444
No 368
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=21.27 E-value=3.8e+02 Score=27.10 Aligned_cols=106 Identities=15% Similarity=0.219 Sum_probs=56.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-CCCeEEE-ECCHHHHHHHHHhcCCCce-EEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005719 24 MRVLAVDDDPTCLKVLENFLRA-CQYEVTV-TNQAVTALKMLRENRNNFD-LVISDVHMPDMDGFKLLEHVGLEMDLPVI 100 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~-~gy~Vt~-as~a~eALe~L~e~~~~pD-LVLlDV~MPdmDG~elLe~I~~~~dlPVI 100 (681)
+||.||---..-...+..+.+. .+++++. +..-.+..+.+.+.- .++ -+..| --+++ . ..++-+|
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~-g~~~~~~~~-------~~~ll---~-~~~~D~V 70 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQY-QLNATVYPN-------DDSLL---A-DENVDAV 70 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHT-TCCCEEESS-------HHHHH---H-CTTCCEE
T ss_pred EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHh-CCCCeeeCC-------HHHHh---c-CCCCCEE
Confidence 6788887766555545444423 3666663 333333333332221 111 12211 11222 2 2334444
Q ss_pred EEEc--CCChHHHHHHHhcCCcEEEeCCC--ChHHHHHHHHHHHH
Q 005719 101 MLSA--YGDTKLVMKGITHGACDYLLKPV--RIEELKNIWQHVIR 141 (681)
Q Consensus 101 mLSa--~~d~e~v~kAl~~GA~DYLlKPv--s~eEL~~i~q~Vlr 141 (681)
+++. ....+.+.++++.|..=|+-||+ +.++.+++++.+-+
T Consensus 71 ~i~tp~~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~ 115 (344)
T 3mz0_A 71 LVTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIK 115 (344)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred EECCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHH
Confidence 4433 33456778899999988999995 56787777776544
No 369
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=21.25 E-value=1.8e+02 Score=32.10 Aligned_cols=55 Identities=11% Similarity=0.095 Sum_probs=41.4
Q ss_pred CceEEEEeCCCCCCC-HHHHHHHHhcc-CCCcEEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 69 NFDLVISDVHMPDMD-GFKLLEHVGLE-MDLPVIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 69 ~pDLVLlDV~MPdmD-G~elLe~I~~~-~dlPVImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
.+|+|.+|...+... -+++++.++.. +++|||+ ......+.+..+.++||+...+
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIG-GNVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred cCceEEeccccccchHHHHHHHHHHHHCCCceEEE-cccCcHHHHHHHHHhCCCEEEE
Confidence 489999999877543 35777888654 4788887 3345667888999999988875
No 370
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=21.24 E-value=3.6e+02 Score=27.86 Aligned_cols=91 Identities=9% Similarity=-0.034 Sum_probs=52.4
Q ss_pred EEEEeCCHHHHHHHHHHH---HhCC--Ce-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 005719 26 VLAVDDDPTCLKVLENFL---RACQ--YE-VTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPV 99 (681)
Q Consensus 26 VLIVDDD~~~r~iL~~~L---e~~g--y~-Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPV 99 (681)
|||-|.+-...-.+.+.+ ++.. .. .+.+.+..++.+.++. ..|+|.+|-.-| -++-+.++....-..
T Consensus 172 vlikdNHi~~~G~i~~Av~~ar~~~~~~~IeVEv~tl~ea~eAl~a---GaD~I~LDn~~~----~~l~~av~~~~~~v~ 244 (287)
T 3tqv_A 172 YLIKENHIRSAGGIAKAVTKAKKLDSNKVVEVEVTNLDELNQAIAA---KADIVMLDNFSG----EDIDIAVSIARGKVA 244 (287)
T ss_dssp EEECTTTC----CHHHHHHHHHHHCTTSCEEEEESSHHHHHHHHHT---TCSEEEEESCCH----HHHHHHHHHHTTTCE
T ss_pred EEEeHHHHHHhCCHHHHHHHHHhhCCCCcEEEEeCCHHHHHHHHHc---CCCEEEEcCCCH----HHHHHHHHhhcCCce
Confidence 666666544332233322 2212 22 3368888999888874 489999996332 222222322222345
Q ss_pred EEEEcCCChHHHHHHHhcCCcEEE
Q 005719 100 IMLSAYGDTKLVMKGITHGACDYL 123 (681)
Q Consensus 100 ImLSa~~d~e~v~kAl~~GA~DYL 123 (681)
|..|+.-+.+.+.+..+.|++.+-
T Consensus 245 ieaSGGIt~~~i~~~a~tGVD~Is 268 (287)
T 3tqv_A 245 LEVSGNIDRNSIVAIAKTGVDFIS 268 (287)
T ss_dssp EEEESSCCTTTHHHHHTTTCSEEE
T ss_pred EEEECCCCHHHHHHHHHcCCCEEE
Confidence 667777788888888889987654
No 371
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=21.14 E-value=1.7e+02 Score=29.85 Aligned_cols=57 Identities=25% Similarity=0.422 Sum_probs=38.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHh--C---CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC
Q 005719 21 PIGMRVLAVDDDPTCLKVLENFLRA--C---QYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMP 80 (681)
Q Consensus 21 P~GmRVLIVDDD~~~r~iL~~~Le~--~---gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MP 80 (681)
+...+|..||-++...+..++.+.. . .-+|. ...++.+.+. .....||+|++|...|
T Consensus 117 ~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~---~~~~~fD~Ii~d~~~~ 179 (304)
T 2o07_A 117 PSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK---QNQDAFDVIITDSSDP 179 (304)
T ss_dssp TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH---TCSSCEEEEEEECC--
T ss_pred CCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHh---hCCCCceEEEECCCCC
Confidence 3346899999999999999888754 1 22344 3556655443 2335699999997544
No 372
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=21.09 E-value=3.7e+02 Score=27.88 Aligned_cols=77 Identities=13% Similarity=0.198 Sum_probs=47.4
Q ss_pred hCCC-eEEEECCHHHHHHHHHhcCCCceEEEEeCCCC--CCCH----------HHHHHHH----h-ccCCCcEEEEEc--
Q 005719 45 ACQY-EVTVTNQAVTALKMLRENRNNFDLVISDVHMP--DMDG----------FKLLEHV----G-LEMDLPVIMLSA-- 104 (681)
Q Consensus 45 ~~gy-~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MP--dmDG----------~elLe~I----~-~~~dlPVImLSa-- 104 (681)
+.|. .+..+.+..+|..+... .+|+|++..-+- +.-| .+.++.+ + ..+++ |+++.
T Consensus 161 ~~gL~Ti~~v~~~eeA~amA~a---gpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdv--ivLc~gG 235 (286)
T 2p10_A 161 KLDLLTTPYVFSPEDAVAMAKA---GADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDI--IILSHGG 235 (286)
T ss_dssp HTTCEECCEECSHHHHHHHHHH---TCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCC--EEEEEST
T ss_pred HCCCeEEEecCCHHHHHHHHHc---CCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCc--EEEecCC
Confidence 3454 45577889999888764 389999865421 3323 2233333 1 22444 44433
Q ss_pred -CCChHHHHHHHhc--CCcEEEeCC
Q 005719 105 -YGDTKLVMKGITH--GACDYLLKP 126 (681)
Q Consensus 105 -~~d~e~v~kAl~~--GA~DYLlKP 126 (681)
-...+++..++++ |++.|+.-.
T Consensus 236 pIstpeDv~~~l~~t~G~~G~~gAS 260 (286)
T 2p10_A 236 PIANPEDARFILDSCQGCHGFYGAS 260 (286)
T ss_dssp TCCSHHHHHHHHHHCTTCCEEEESH
T ss_pred CCCCHHHHHHHHhcCCCccEEEeeh
Confidence 3678899999999 999998754
No 373
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=21.08 E-value=2.3e+02 Score=27.67 Aligned_cols=65 Identities=11% Similarity=0.057 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCCeEEEECCH------HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcC
Q 005719 35 CLKVLENFLRACQYEVTVTNQA------VTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAY 105 (681)
Q Consensus 35 ~r~iL~~~Le~~gy~Vt~as~a------~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~ 105 (681)
....+++.+++.||.+.++... .+.++.+.. ..+|-||+-...... -+.++.+.. .+|||++...
T Consensus 33 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~~~~--~~~~~~l~~--~iPvV~i~~~ 103 (303)
T 3kke_A 33 MFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSE--GRVDGVLLQRREDFD--DDMLAAVLE--GVPAVTINSR 103 (303)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHS--CSSSEEEECCCTTCC--HHHHHHHHT--TSCEEEESCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHh--CCCcEEEEecCCCCc--HHHHHHHhC--CCCEEEECCc
Confidence 4455667777889999876532 234555543 358877774332221 115666644 8999988654
No 374
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Probab=20.97 E-value=3.3e+02 Score=27.60 Aligned_cols=79 Identities=10% Similarity=0.074 Sum_probs=47.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECC--HHHHHHHHHhcCCCceEEEEeCCCC-----------CCCH-HHHH
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQY-EVTVTNQ--AVTALKMLRENRNNFDLVISDVHMP-----------DMDG-FKLL 88 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy-~Vt~as~--a~eALe~L~e~~~~pDLVLlDV~MP-----------dmDG-~elL 88 (681)
|||||..-.--+...|.+.|.+.|+ +|+.+.. -.+.++.+.+ .+|+||.-.... ...+ ..++
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~d~~~l~~~~~---~~d~Vih~a~~~~~~~~~~~~~~n~~~~~~l~ 77 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALL---KADFIVHLAGVNRPEHDKEFSLGNVSYLDHVL 77 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTCCHHHHHHHHH---HCSEEEECCCSBCTTCSTTCSSSCCBHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHhc---cCCEEEECCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 6899999887777777777766688 8887654 2344444333 279988644221 1223 3345
Q ss_pred HHHhccCC-CcEEEEEcC
Q 005719 89 EHVGLEMD-LPVIMLSAY 105 (681)
Q Consensus 89 e~I~~~~d-lPVImLSa~ 105 (681)
+.++.... .++|++|..
T Consensus 78 ~a~~~~~~~~~~v~~Ss~ 95 (369)
T 3st7_A 78 DILTRNTKKPAILLSSSI 95 (369)
T ss_dssp HHHTTCSSCCEEEEEEEG
T ss_pred HHHHHhCCCCeEEEeCch
Confidence 55443322 357777764
No 375
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=20.97 E-value=2e+02 Score=30.21 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=40.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCC---eE-EEECCHHHHHHHHHhcCCCceEEEEeC
Q 005719 25 RVLAVDDDPTCLKVLENFLRACQY---EV-TVTNQAVTALKMLRENRNNFDLVISDV 77 (681)
Q Consensus 25 RVLIVDDD~~~r~iL~~~Le~~gy---~V-t~as~a~eALe~L~e~~~~pDLVLlDV 77 (681)
+|..||-++...+..++-++..+. .+ ..+.++.+.+..+......||+|++|.
T Consensus 237 ~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DP 293 (385)
T 2b78_A 237 ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDP 293 (385)
T ss_dssp EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEECC
Confidence 899999999999999988887665 34 356778777765543334699999985
No 376
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=20.92 E-value=1.1e+02 Score=32.27 Aligned_cols=63 Identities=25% Similarity=0.336 Sum_probs=39.4
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 005719 24 MRVLAVDDDPTC----LKVLENFLRACQYEVTVTN---------QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEH 90 (681)
Q Consensus 24 mRVLIVDDD~~~----r~iL~~~Le~~gy~Vt~as---------~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~ 90 (681)
-|||||-|.... .+.+.+.|++.|+++.++. ...++++.+++. .+|+||- .-+..-+++.+.
T Consensus 32 ~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGsv~D~aK~ 106 (383)
T 3ox4_A 32 KNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDN--NSDFVIS---LGGGSPHDCAKA 106 (383)
T ss_dssp CEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHH--TCSEEEE---EESHHHHHHHHH
T ss_pred CEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhc--CcCEEEE---eCCcHHHHHHHH
Confidence 489999886542 3446667777787776553 335666666654 3787754 345555666665
Q ss_pred H
Q 005719 91 V 91 (681)
Q Consensus 91 I 91 (681)
+
T Consensus 107 i 107 (383)
T 3ox4_A 107 I 107 (383)
T ss_dssp H
T ss_pred H
Confidence 5
No 377
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (G domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans} PDB: 3ii8_A* 3n3t_A*
Probab=20.90 E-value=2.3e+02 Score=28.58 Aligned_cols=95 Identities=11% Similarity=0.116 Sum_probs=61.2
Q ss_pred HHHHHhCCCeEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCC---CCC--HHHHHHHH---hccCCCcEEEEEcCCChH
Q 005719 40 ENFLRACQYEVTV--TNQAVTALKMLRENRNNFDLVISDVHMP---DMD--GFKLLEHV---GLEMDLPVIMLSAYGDTK 109 (681)
Q Consensus 40 ~~~Le~~gy~Vt~--as~a~eALe~L~e~~~~pDLVLlDV~MP---dmD--G~elLe~I---~~~~dlPVImLSa~~d~e 109 (681)
...|+..|+.+.. +..+...+..|..- ++|.|=+|-..- ..+ ...+++.| ....++.|| ....++.+
T Consensus 169 l~~Lr~~G~~ialDDFGtG~ssl~~L~~l--~~d~iKID~sfv~~i~~~~~~~~iv~~ii~la~~lg~~vv-AEGVEt~~ 245 (294)
T 2r6o_A 169 LDALRARGVRLALDDFGTGYSSLSYLSQL--PFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLGMEVV-AEGIETAQ 245 (294)
T ss_dssp HHHHHHHTCEEEEEEETSSCBCHHHHHHS--CCCEEEECHHHHTTTTTSHHHHHHHHHHHHHHHHTTCEEE-ECCCCSHH
T ss_pred HHHHHHCCCEEEEECCCCCchhHHHHHhC--CCCEEEECHHHHhhhhcChHHHHHHHHHHHHHHHCCCEEE-EecCCcHH
Confidence 3446666887664 55555566777654 489999995331 122 33455544 234556555 55666777
Q ss_pred HHHHHHhcCCcE----EEeCCCChHHHHHHHH
Q 005719 110 LVMKGITHGACD----YLLKPVRIEELKNIWQ 137 (681)
Q Consensus 110 ~v~kAl~~GA~D----YLlKPvs~eEL~~i~q 137 (681)
....+.+.|++. |+.||...+++...+.
T Consensus 246 q~~~l~~lG~d~~QGy~~~~P~~~~~~~~~l~ 277 (294)
T 2r6o_A 246 QYAFLRDRGCEFGQGNLMSTPQAADAFASLLD 277 (294)
T ss_dssp HHHHHHHTTCCEECSTTTCCCEEHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEcCccCCCCCHHHHHHHHH
Confidence 777888889875 5889999999876554
No 378
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=20.84 E-value=5.5e+02 Score=24.48 Aligned_cols=114 Identities=13% Similarity=0.085 Sum_probs=60.4
Q ss_pred CCCCCCcEEEEEeCCH--HHHHHHHHHHHhCCCeEEEECCH-----------HHHHHHHHhcCCCceEEEEeCCCCCCCH
Q 005719 18 DKFPIGMRVLAVDDDP--TCLKVLENFLRACQYEVTVTNQA-----------VTALKMLRENRNNFDLVISDVHMPDMDG 84 (681)
Q Consensus 18 ~~fP~GmRVLIVDDD~--~~r~iL~~~Le~~gy~Vt~as~a-----------~eALe~L~e~~~~pDLVLlDV~MPdmDG 84 (681)
.+-|..|||.|--|+. ...+.|.++|+..||+|+-+... ..+-+.+......+-|+||- .|
T Consensus 16 ~~~~~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYPd~a~~va~~V~~g~~d~GIliCG------TG 89 (166)
T 3s5p_A 16 TQGPGSMKVAFASDHGGRDLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEAVTSGRADCCILVCG------TG 89 (166)
T ss_dssp ---CTTCEEEEEECGGGHHHHHHHHHHHHHTTCEEEEEEC--------CHHHHHHHHHHHTTSCSEEEEEES------SS
T ss_pred CCCCCceEEEEEECchHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcC------Cc
Confidence 4567889999998886 56778999999999999855321 11222333333344466664 33
Q ss_pred HHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCC---CChHHHHHHHHHHH
Q 005719 85 FKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKP---VRIEELKNIWQHVI 140 (681)
Q Consensus 85 ~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKP---vs~eEL~~i~q~Vl 140 (681)
+...=...+.+.+.-.+. .+...+..+.++.=.-.|.-+ +..+..+++++..+
T Consensus 90 iG~sIaANKv~GIRAAlc---~d~~sA~laR~hNnANVL~lG~Rvig~~lA~~Iv~~fL 145 (166)
T 3s5p_A 90 IGISIAANKMKGIRCALC---STEYDAEMARKHNNANALALGGRTTGPEVAASILSRFL 145 (166)
T ss_dssp HHHHHHHHTSTTCCEEEC---SSHHHHHHHHHTTCCCEEEEETTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCeEEEEe---CCHHHHHHHHHhCCCcEEEEcccccCHHHHHHHHHHHH
Confidence 332212223344443333 234455555555444444444 33455555555555
No 379
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=20.82 E-value=1.6e+02 Score=28.06 Aligned_cols=64 Identities=14% Similarity=0.322 Sum_probs=45.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHH-HHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRACQY--EVT-VTNQAVTALK-MLRENRNNFDLVISDVHMPDMDGFKLLEHV 91 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~~gy--~Vt-~as~a~eALe-~L~e~~~~pDLVLlDV~MPdmDG~elLe~I 91 (681)
+.+|..||-++......++.++..+. .|. ...++.+.+. .+ ...||+|++|...+ +-.++++.+
T Consensus 95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~fD~V~~~~~~~--~~~~~l~~~ 162 (232)
T 3ntv_A 95 DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN---DKVYDMIFIDAAKA--QSKKFFEIY 162 (232)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT---TSCEEEEEEETTSS--SHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc---cCCccEEEEcCcHH--HHHHHHHHH
Confidence 57999999999999999999988775 354 4556655444 33 34699999996533 334456655
No 380
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=20.80 E-value=94 Score=32.44 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=40.1
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC
Q 005719 20 FPIGMRVLAVDDDPTCLKVLENFLRAC-QYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPD 81 (681)
Q Consensus 20 fP~GmRVLIVDDD~~~r~iL~~~Le~~-gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPd 81 (681)
+|. .+|.+||=++...+..++.+... .-++. +..++.+.++.+ ....||+||+|...+.
T Consensus 111 ~p~-~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~--~~~~fDvIi~D~~~~~ 171 (317)
T 3gjy_A 111 YPQ-SRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESF--TPASRDVIIRDVFAGA 171 (317)
T ss_dssp STT-CEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTC--CTTCEEEEEECCSTTS
T ss_pred CCC-cEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhc--cCCCCCEEEECCCCcc
Confidence 454 59999999999998888877532 23444 456766655322 1246999999986553
No 381
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=20.73 E-value=2.6e+02 Score=28.68 Aligned_cols=94 Identities=11% Similarity=-0.023 Sum_probs=54.5
Q ss_pred EEEEeCCHHHH----HHHHHHHHhCC--CeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 005719 26 VLAVDDDPTCL----KVLENFLRACQ--YEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGL-EMDLP 98 (681)
Q Consensus 26 VLIVDDD~~~r----~iL~~~Le~~g--y~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~-~~dlP 98 (681)
|||-|++-... ..++..-+..+ .-.+.+.+..++.+.+.. ..|+|++|-.-| .+--++++.++. .+. .
T Consensus 168 vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Vev~t~eea~eal~a---GaD~I~LDn~~~-~~~~~~v~~l~~~~~~-v 242 (284)
T 1qpo_A 168 ALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPE---KPELILLDNFAV-WQTQTAVQRRDSRAPT-V 242 (284)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEESSHHHHHHHGGG---CCSEEEEETCCH-HHHHHHHHHHHHHCTT-C
T ss_pred hcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEECCCCH-HHHHHHHHHhhccCCC-e
Confidence 67766654332 22333222333 223457788888888763 479999997322 111233344432 223 3
Q ss_pred EEEEEcCCChHHHHHHHhcCCcEEEe
Q 005719 99 VIMLSAYGDTKLVMKGITHGACDYLL 124 (681)
Q Consensus 99 VImLSa~~d~e~v~kAl~~GA~DYLl 124 (681)
.|..++.-+.+.+.+..+.|++.|.+
T Consensus 243 ~ieaSGGIt~~~i~~~a~tGVD~isv 268 (284)
T 1qpo_A 243 MLESSGGLSLQTAATYAETGVDYLAV 268 (284)
T ss_dssp EEEEESSCCTTTHHHHHHTTCSEEEC
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEEE
Confidence 56677777788888888999877653
No 382
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=20.51 E-value=1.3e+02 Score=29.46 Aligned_cols=62 Identities=13% Similarity=0.119 Sum_probs=33.9
Q ss_pred CCcEEEEEeCC------HHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 005719 22 IGMRVLAVDDD------PTCLKVLENFLRACQYEVTVTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHV 91 (681)
Q Consensus 22 ~GmRVLIVDDD------~~~r~iL~~~Le~~gy~Vt~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I 91 (681)
..-||++|+-- ..+...+.++|++.|+++..+....+..+.+++ .|.|++ |+.+-..+++.+
T Consensus 30 ~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~~----ad~I~l----pGG~~~~~~~~l 97 (229)
T 1fy2_A 30 GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEK----AEIIIV----GGGNTFQLLKES 97 (229)
T ss_dssp TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHHH----CSEEEE----CCSCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHhc----CCEEEE----CCCcHHHHHHHH
Confidence 34678888644 256666777777778777665322122233321 355554 555555555444
No 383
>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Probab=20.46 E-value=4.8e+02 Score=27.39 Aligned_cols=81 Identities=4% Similarity=-0.043 Sum_probs=54.1
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEE-EeCCCChHHHH
Q 005719 55 QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDY-LLKPVRIEELK 133 (681)
Q Consensus 55 ~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DY-LlKPvs~eEL~ 133 (681)
+..+|+++++.- ..+++.+++-=++. +-++.++.|+....+||+.--...+.....++++.|++|+ .+|+....-|.
T Consensus 230 ~~~~ai~~~~~l-~~~~i~~iE~P~~~-~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit 307 (410)
T 2gl5_A 230 GTNSAIQFAKAI-EKYRIFLYEEPIHP-LNSDNMQKVSRSTTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCGGIT 307 (410)
T ss_dssp CHHHHHHHHHHH-GGGCEEEEECSSCS-SCHHHHHHHHHHCSSCEEECTTCCTTHHHHHHHHTTCCSEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHH-HhcCCCeEECCCCh-hhHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHH
Confidence 567888887653 34788777754543 3366667776556788776544456788889999887665 56787755555
Q ss_pred HHHH
Q 005719 134 NIWQ 137 (681)
Q Consensus 134 ~i~q 137 (681)
+.++
T Consensus 308 ~~~~ 311 (410)
T 2gl5_A 308 EGKK 311 (410)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 384
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=20.41 E-value=1.8e+02 Score=30.12 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=44.6
Q ss_pred ceEEEE-eCCCCCCCHH-HHHHHHh-ccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHH
Q 005719 70 FDLVIS-DVHMPDMDGF-KLLEHVG-LEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHV 139 (681)
Q Consensus 70 pDLVLl-DV~MPdmDG~-elLe~I~-~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~V 139 (681)
+|.|++ |=|.--.-|+ +.++.++ ..+..||.+-. ++.+.+.+|++.||+..++..+++++++.+++.+
T Consensus 169 ~d~vlikdNHi~~~G~i~~Av~~ar~~~~~~~IeVEv--~tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~ 239 (287)
T 3tqv_A 169 FDAYLIKENHIRSAGGIAKAVTKAKKLDSNKVVEVEV--TNLDELNQAIAAKADIVMLDNFSGEDIDIAVSIA 239 (287)
T ss_dssp SSSEEECTTTC----CHHHHHHHHHHHCTTSCEEEEE--SSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred ccEEEEeHHHHHHhCCHHHHHHHHHhhCCCCcEEEEe--CCHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhh
Confidence 345554 4443322222 3455553 34567777633 4568889999999999999999999999888764
No 385
>3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A {Anaerostipes caccae}
Probab=20.40 E-value=1.2e+02 Score=33.16 Aligned_cols=81 Identities=12% Similarity=0.142 Sum_probs=44.4
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEEcCC---ChHHHHHHHhcCCcEE-EeCCCChH
Q 005719 55 QAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVIMLSAYG---DTKLVMKGITHGACDY-LLKPVRIE 130 (681)
Q Consensus 55 ~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVImLSa~~---d~e~v~kAl~~GA~DY-LlKPvs~e 130 (681)
+..++++++++.-..++++.++==++..| ++-.+.|+.....||-++..+. +.....++++.+++++ .+|+-...
T Consensus 290 t~~eai~~~~~lle~y~i~~IEdPl~~dD-~eg~~~L~~~~~~~ipI~gDE~~~tn~~~~~~~i~~~a~d~i~iKv~~iG 368 (449)
T 3uj2_A 290 ASEELVAHWKSLCERYPIVSIEDGLDEED-WEGWQYMTRELGDKIQLVGDDLFVTNTERLNKGIKERCGNSILIKLNQIG 368 (449)
T ss_dssp EHHHHHHHHHHHHHHSCEEEEESCSCTTC-HHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHC
T ss_pred CHHHHHHHHHHHHHhcCceEEECCCCcch-HHHHHHHHHHhCCCceEECCcceeCCHHHHHHHHHcCCCCEEEECccccC
Confidence 45777766643112478888765454433 3444444333323443334432 4778888999888765 56665444
Q ss_pred HHHHHH
Q 005719 131 ELKNIW 136 (681)
Q Consensus 131 EL~~i~ 136 (681)
-|.+.+
T Consensus 369 GiTea~ 374 (449)
T 3uj2_A 369 TVSETL 374 (449)
T ss_dssp SHHHHH
T ss_pred CHHHHH
Confidence 343333
No 386
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=20.37 E-value=6.8e+02 Score=25.32 Aligned_cols=106 Identities=15% Similarity=0.077 Sum_probs=60.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 005719 23 GMRVLAVDDDPTCLKVLENFLRA-CQYEVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDLPVI 100 (681)
Q Consensus 23 GmRVLIVDDD~~~r~iL~~~Le~-~gy~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dlPVI 100 (681)
.+||.||---..-...+..+.+. .+++++ ++..-.+..+.+.+. +.+...+ |--++++ ..++-+|
T Consensus 13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~---~~~~~~~------~~~~ll~----~~~~D~V 79 (354)
T 3q2i_A 13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVER---TGARGHA------SLTDMLA----QTDADIV 79 (354)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH---HCCEEES------CHHHHHH----HCCCSEE
T ss_pred cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHH---cCCceeC------CHHHHhc----CCCCCEE
Confidence 47999998876655555555444 367766 444333333333222 2222221 2223332 2344455
Q ss_pred EEEcC--CChHHHHHHHhcCCcEEEeCCC--ChHHHHHHHHHHHH
Q 005719 101 MLSAY--GDTKLVMKGITHGACDYLLKPV--RIEELKNIWQHVIR 141 (681)
Q Consensus 101 mLSa~--~d~e~v~kAl~~GA~DYLlKPv--s~eEL~~i~q~Vlr 141 (681)
+++.. ...+.+.++++.|..=|+-||+ +.++..++++.+-+
T Consensus 80 ~i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~ 124 (354)
T 3q2i_A 80 ILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADK 124 (354)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred EECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHH
Confidence 55443 3456778899999999999996 56777777766543
No 387
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=20.32 E-value=4.1e+02 Score=24.00 Aligned_cols=66 Identities=20% Similarity=0.163 Sum_probs=43.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-eEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHH
Q 005719 24 MRVLAVDDDPTCLKVLENFLRACQY-EVT-VTNQAVTALKMLRENRNNFDLVISDVHMPDM--DGFKLLEHV 91 (681)
Q Consensus 24 mRVLIVDDD~~~r~iL~~~Le~~gy-~Vt-~as~a~eALe~L~e~~~~pDLVLlDV~MPdm--DG~elLe~I 91 (681)
.+|..||-++...+..++.++..+. .+. ...+..+.+..+. ...||+|++|.-.... +-.++++.+
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~fD~i~~~~p~~~~~~~~~~~l~~~ 137 (189)
T 3p9n_A 68 ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGT--TSPVDLVLADPPYNVDSADVDAILAAL 137 (189)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCC--SSCCSEEEECCCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhcc--CCCccEEEECCCCCcchhhHHHHHHHH
Confidence 4799999999999999998877664 444 4556655543221 3469999998533221 233455555
No 388
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=20.26 E-value=4.3e+02 Score=26.83 Aligned_cols=106 Identities=15% Similarity=0.088 Sum_probs=59.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC--CCeEEE-ECCHHH-HHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 005719 22 IGMRVLAVDDDPTCLKVLENFLRAC--QYEVTV-TNQAVT-ALKMLRENRNNFDLVISDVHMPDMDGFKLLEHVGLEMDL 97 (681)
Q Consensus 22 ~GmRVLIVDDD~~~r~iL~~~Le~~--gy~Vt~-as~a~e-ALe~L~e~~~~pDLVLlDV~MPdmDG~elLe~I~~~~dl 97 (681)
..+||.||---..........|... +++++. +....+ +.++..+.. ..-+..| --++ +. .+++
T Consensus 17 ~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~--~~~~~~~-------~~~l---l~-~~~v 83 (340)
T 1zh8_A 17 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVG--NPAVFDS-------YEEL---LE-SGLV 83 (340)
T ss_dssp CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHS--SCEEESC-------HHHH---HH-SSCC
T ss_pred CceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhC--CCcccCC-------HHHH---hc-CCCC
Confidence 3589999988743444444445444 466653 443333 333333211 1112222 1222 22 2345
Q ss_pred cEEEEEcC--CChHHHHHHHhcCCcEEEeCCC--ChHHHHHHHHHHH
Q 005719 98 PVIMLSAY--GDTKLVMKGITHGACDYLLKPV--RIEELKNIWQHVI 140 (681)
Q Consensus 98 PVImLSa~--~d~e~v~kAl~~GA~DYLlKPv--s~eEL~~i~q~Vl 140 (681)
-+|+++.. .-.+.+.+|+++|..=|+-||+ +.++..++++.+-
T Consensus 84 D~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 130 (340)
T 1zh8_A 84 DAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSE 130 (340)
T ss_dssp SEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CEEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHH
Confidence 45545433 3457888999999999999996 6778887777653
No 389
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=20.02 E-value=1.6e+02 Score=29.51 Aligned_cols=97 Identities=21% Similarity=0.228 Sum_probs=55.7
Q ss_pred cEEEEEeCC-----HHHHHHHHHHHHhCCCeEEEECCHHHHH----------HHHHhcCCCceEEEEeCCCCCCCHH--H
Q 005719 24 MRVLAVDDD-----PTCLKVLENFLRACQYEVTVTNQAVTAL----------KMLRENRNNFDLVISDVHMPDMDGF--K 86 (681)
Q Consensus 24 mRVLIVDDD-----~~~r~iL~~~Le~~gy~Vt~as~a~eAL----------e~L~e~~~~pDLVLlDV~MPdmDG~--e 86 (681)
.||+||-.. ......+.+.|++.|++|.......+.+ +.+. ..+|+||+ -+.||- +
T Consensus 6 kki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~D~vi~----~GGDGT~l~ 78 (292)
T 2an1_A 6 KCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIG---QQADLAVV----VGGDGNMLG 78 (292)
T ss_dssp CEEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHH---HHCSEEEE----CSCHHHHHH
T ss_pred cEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhcc---cCCCEEEE----EcCcHHHHH
Confidence 367777431 1234567777888899988765433221 1222 23799988 477873 4
Q ss_pred HHHHHhccCCCcEEEEEcCCChHHHHHHHhcCCcEEEeCCCChHHHHHHHHHHHHH
Q 005719 87 LLEHVGLEMDLPVIMLSAYGDTKLVMKGITHGACDYLLKPVRIEELKNIWQHVIRR 142 (681)
Q Consensus 87 lLe~I~~~~dlPVImLSa~~d~e~v~kAl~~GA~DYLlKPvs~eEL~~i~q~Vlrr 142 (681)
+++.+.. .++|++-+. .|-.+||.. +..+++..+++.++..
T Consensus 79 a~~~~~~-~~~P~lGI~-------------~Gt~gfla~-~~~~~~~~al~~i~~g 119 (292)
T 2an1_A 79 AARTLAR-YDINVIGIN-------------RGNLGFLTD-LDPDNALQQLSDVLEG 119 (292)
T ss_dssp HHHHHTT-SSCEEEEBC-------------SSSCCSSCC-BCTTSHHHHHHHHHTT
T ss_pred HHHHhhc-CCCCEEEEE-------------CCCcccCCc-CCHHHHHHHHHHHHcC
Confidence 4444432 357877663 244455543 3456777777777654
Done!