BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005721
(681 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B4SXC1|HLDD_SALNS ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella newport
(strain SL254) GN=hldD PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 575 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 627
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 628 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 673
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|P67912|HLDD_SALTY ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=hldD PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 575 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 627
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 628 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 673
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|P67913|HLDD_SALTI ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella typhi
GN=hldD PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 575 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 627
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 628 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 673
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|B4TZW1|HLDD_SALSV ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella
schwarzengrund (strain CVM19633) GN=hldD PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 575 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 627
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 628 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 673
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|B5BHZ3|HLDD_SALPK ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella paratyphi A
(strain AKU_12601) GN=hldD PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 575 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 627
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 628 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 673
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|A9MVL2|HLDD_SALPB ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella paratyphi B
(strain ATCC BAA-1250 / SPB7) GN=hldD PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 575 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 627
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 628 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 673
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|Q5PC05|HLDD_SALPA ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella paratyphi A
(strain ATCC 9150 / SARB42) GN=hldD PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 575 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 627
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 628 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 673
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|B4T9A3|HLDD_SALHS ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella heidelberg
(strain SL476) GN=hldD PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 575 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 627
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 628 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 673
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|B5EXC5|HLDD_SALA4 ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella agona
(strain SL483) GN=hldD PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 575 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 627
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 628 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 673
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|C0Q1V2|HLDD_SALPC ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella paratyphi C
(strain RKS4594) GN=hldD PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 575 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 627
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 628 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 673
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|Q57IC3|HLDD_SALCH ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella
choleraesuis (strain SC-B67) GN=hldD PE=3 SV=1
Length = 310
Score = 35.0 bits (79), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 47/109 (43%), Gaps = 10/109 (9%)
Query: 575 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNLQSSESTKLGCISEST-- 627
+ S FHL L+ G+ E SE +K FVY AVNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVAAVNLWFLESGKSGIFNLGTGR 239
Query: 628 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 673
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|B8CVJ3|HLDD_SHEPW ADP-L-glycero-D-manno-heptose-6-epimerase OS=Shewanella
piezotolerans (strain WP3 / JCM 13877) GN=hldD PE=3 SV=1
Length = 317
Score = 34.3 bits (77), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 46/110 (41%), Gaps = 16/110 (14%)
Query: 578 SSVFHLVAGLDGGDRTVSLESETYKGCFVYT----AVNL---QSSESTKLGCISESTEAG 630
+ + L G+DG + L FVY VNL Q+SE + +
Sbjct: 192 NGICRLFEGVDGYENGQQLRD------FVYVEDVVKVNLWLWQNSEVSGIFNCGTGQAQS 245
Query: 631 FNNAASFVIE---KGLSEYHPISFVAKGANRNFLLAPLLSLRDESYTVYF 677
FN+ A+ VI KG EY P KGA +++ A L LR YT F
Sbjct: 246 FNDVANAVIAHHGKGAVEYIPFPDKLKGAYQSYTQADLTKLRAAGYTAEF 295
>sp|P32812|YGL1_GEOSE Uncharacterized protein in gldA 5'region (Fragment) OS=Geobacillus
stearothermophilus PE=4 SV=1
Length = 97
Score = 34.3 bits (77), Expect = 3.5, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 69 TYADNAEALRMTTWMVEYFYNRVQNVIKKYSIE-----RHWQTLNEEAGGMNDVLYKL 121
T+A+ E L+ W+ + ++RV N+IK IE + ++ N+E G+++ L +L
Sbjct: 22 TFAEYLEILKEKPWIAQSAHSRVYNMIKDAGIEEINGRKRYKFFNQEIFGLDEALERL 79
>sp|A9MKQ6|HLDD_SALAR ADP-L-glycero-D-manno-heptose-6-epimerase OS=Salmonella arizonae
(strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=hldD PE=3
SV=1
Length = 310
Score = 33.5 bits (75), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 575 AQGSSVFHLVAGLDGGDRTVSLE-SETYKGCFVYTA----VNLQSSESTKLGCISEST-- 627
+ S FHL L+ G+ E SE +K FVY VNL ES K G + T
Sbjct: 180 SMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLESGKSGIFNLGTGR 239
Query: 628 EAGFNNAASFVI---EKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 673
F A + +KG EY P KG + F A L +LR+ Y
Sbjct: 240 AESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFTQADLTNLRNAGY 288
>sp|A7MQ91|HLDD_CROS8 ADP-L-glycero-D-manno-heptose-6-epimerase OS=Cronobacter sakazakii
(strain ATCC BAA-894) GN=hldD PE=3 SV=1
Length = 310
Score = 32.7 bits (73), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Query: 578 SSVFHLVAGLDGGDRTVSLE-SETYKGCFVYT----AVNL---QSSESTKLGC---ISES 626
S FHL L+ G+ E SE +K F+Y AVNL Q+ S C +ES
Sbjct: 183 SVAFHLNTQLNNGESPKLFEGSENFKRDFIYVGDVAAVNLWFWQNGVSGIFNCGTGRAES 242
Query: 627 TEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLAPLLSLRDESY 673
+A + A +F +KG EY P KG + F A L +LR Y
Sbjct: 243 FQAVADAALAFH-KKGSIEYIPFPEKLKGRYQAFTQADLTNLRAAGY 288
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 256,889,658
Number of Sequences: 539616
Number of extensions: 10902041
Number of successful extensions: 24082
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 24035
Number of HSP's gapped (non-prelim): 72
length of query: 681
length of database: 191,569,459
effective HSP length: 124
effective length of query: 557
effective length of database: 124,657,075
effective search space: 69433990775
effective search space used: 69433990775
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)