Query 005721
Match_columns 681
No_of_seqs 219 out of 853
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 12:45:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3533 Uncharacterized protei 100.0 1.6E-98 4E-103 801.9 32.2 425 1-457 78-505 (589)
2 PF07944 DUF1680: Putative gly 100.0 1.9E-97 4E-102 841.7 41.7 430 1-453 72-520 (520)
3 PF05270 AbfB: Alpha-L-arabino 99.6 6.4E-16 1.4E-20 146.2 8.9 110 545-664 2-116 (142)
4 PF05270 AbfB: Alpha-L-arabino 99.3 1.5E-11 3.3E-16 116.6 9.6 125 495-639 12-142 (142)
5 cd00249 AGE AGE domain; N-acyl 98.7 3.3E-07 7.2E-12 100.3 17.8 284 2-301 66-375 (384)
6 cd00249 AGE AGE domain; N-acyl 98.3 3.1E-05 6.8E-10 84.8 19.7 252 13-276 15-289 (384)
7 PF07944 DUF1680: Putative gly 98.1 8.6E-05 1.9E-09 85.4 16.4 241 6-259 5-267 (520)
8 PF03663 Glyco_hydro_76: Glyco 97.9 3E-05 6.4E-10 85.4 9.3 231 10-262 2-256 (370)
9 COG1331 Highly conserved prote 97.6 0.0012 2.7E-08 76.3 16.0 137 114-263 416-574 (667)
10 PF03663 Glyco_hydro_76: Glyco 97.6 0.00064 1.4E-08 75.0 12.4 132 61-194 94-256 (370)
11 cd04791 LanC_SerThrkinase Lant 97.5 0.0014 3E-08 70.0 13.1 175 2-194 96-276 (321)
12 PF07470 Glyco_hydro_88: Glyco 97.4 0.0038 8.3E-08 67.6 15.4 220 2-262 38-287 (336)
13 cd04791 LanC_SerThrkinase Lant 97.3 0.0068 1.5E-07 64.7 15.7 169 60-262 88-276 (321)
14 PF07221 GlcNAc_2-epim: N-acyl 96.9 0.0056 1.2E-07 66.5 10.4 243 5-260 36-312 (346)
15 PTZ00470 glycoside hydrolase f 96.7 0.017 3.7E-07 66.3 13.1 79 60-138 160-251 (522)
16 cd04434 LanC_like LanC-like pr 96.5 0.096 2.1E-06 55.8 16.8 213 2-261 63-300 (343)
17 COG1331 Highly conserved prote 96.5 0.048 1E-06 63.5 14.7 124 60-190 416-566 (667)
18 cd04792 LanM-like LanM-like pr 96.3 0.093 2E-06 63.8 17.2 208 2-256 554-777 (825)
19 PF07221 GlcNAc_2-epim: N-acyl 96.3 0.041 8.9E-07 59.8 12.3 175 3-193 94-309 (346)
20 PF01532 Glyco_hydro_47: Glyco 95.8 0.046 9.9E-07 62.0 10.4 193 60-256 82-309 (452)
21 COG4225 Predicted unsaturated 95.7 0.028 6.1E-07 60.4 7.3 115 60-192 41-169 (357)
22 PF07470 Glyco_hydro_88: Glyco 95.5 0.055 1.2E-06 58.6 9.2 136 114-271 30-168 (336)
23 COG3533 Uncharacterized protei 95.3 0.084 1.8E-06 59.3 9.7 175 57-258 69-260 (589)
24 cd04792 LanM-like LanM-like pr 95.2 0.5 1.1E-05 57.6 17.0 213 2-256 504-732 (825)
25 cd04434 LanC_like LanC-like pr 95.1 0.29 6.2E-06 52.1 12.9 180 2-192 112-299 (343)
26 cd04794 euk_LANCL eukaryotic L 95.0 0.51 1.1E-05 51.3 14.9 218 2-258 65-302 (343)
27 cd04794 euk_LANCL eukaryotic L 94.6 0.36 7.9E-06 52.5 12.2 128 60-194 170-305 (343)
28 PF06662 C5-epim_C: D-glucuron 94.5 0.17 3.6E-06 50.8 8.5 132 115-253 36-186 (189)
29 COG4403 LcnDR2 Lantibiotic mod 94.4 0.18 3.8E-06 60.2 9.8 109 2-137 709-821 (963)
30 COG4225 Predicted unsaturated 93.9 0.21 4.6E-06 53.9 8.2 138 110-271 37-179 (357)
31 cd04793 LanC LanC is the cycla 93.3 1.6 3.6E-05 48.0 14.6 184 6-194 120-328 (382)
32 PF06662 C5-epim_C: D-glucuron 91.8 1.1 2.3E-05 45.1 9.6 128 2-138 43-188 (189)
33 KOG2787 Lanthionine synthetase 91.5 1.1 2.4E-05 48.1 9.5 117 6-139 239-356 (403)
34 PF01532 Glyco_hydro_47: Glyco 90.8 0.35 7.6E-06 54.9 5.6 192 3-204 158-399 (452)
35 COG2942 N-acyl-D-glucosamine 2 90.7 3.1 6.7E-05 46.0 12.3 132 56-193 176-337 (388)
36 PF00759 Glyco_hydro_9: Glycos 89.8 4 8.6E-05 46.0 13.0 244 6-278 92-373 (444)
37 PLN02345 endoglucanase 85.2 78 0.0017 36.4 20.5 124 6-135 80-228 (469)
38 PF06917 Pectate_lyase_2: Peri 83.6 2 4.3E-05 48.6 5.9 73 60-137 389-465 (557)
39 PF05147 LANC_like: Lanthionin 78.3 2.9 6.2E-05 44.9 4.9 123 60-193 172-308 (355)
40 KOG2431 1, 2-alpha-mannosidase 78.1 7.7 0.00017 43.2 7.9 186 3-204 255-488 (546)
41 KOG2429 Glycosyl hydrolase, fa 77.9 9.8 0.00021 43.8 8.8 32 4-37 211-242 (622)
42 PF05147 LANC_like: Lanthionin 75.4 11 0.00024 40.4 8.4 122 3-138 182-303 (355)
43 cd04793 LanC LanC is the cycla 74.2 24 0.00052 38.9 10.8 132 2-138 185-322 (382)
44 PLN02909 Endoglucanase 74.0 30 0.00066 39.8 11.7 121 6-136 118-264 (486)
45 PF15095 IL33: Interleukin 33; 73.2 31 0.00067 35.4 10.1 89 517-609 156-246 (268)
46 COG4403 LcnDR2 Lantibiotic mod 72.5 42 0.00091 41.0 12.5 155 4-186 662-820 (963)
47 PTZ00470 glycoside hydrolase f 71.9 11 0.00024 43.7 7.6 94 160-255 156-251 (522)
48 KOG2244 Highly conserved prote 71.7 54 0.0012 38.0 12.5 33 60-92 510-543 (786)
49 KOG2431 1, 2-alpha-mannosidase 71.3 12 0.00025 41.8 7.1 81 59-139 179-271 (546)
50 COG2942 N-acyl-D-glucosamine 2 69.5 98 0.0021 34.6 13.8 193 73-274 73-287 (388)
51 PLN02266 endoglucanase 67.1 49 0.0011 38.4 11.5 127 6-137 128-280 (510)
52 KOG2787 Lanthionine synthetase 66.6 19 0.0004 39.1 7.3 107 73-194 240-361 (403)
53 PLN02175 endoglucanase 65.5 37 0.00081 39.1 10.0 105 74-193 194-309 (484)
54 PLN02340 endoglucanase 65.2 55 0.0012 38.8 11.6 127 6-137 114-264 (614)
55 PLN02613 endoglucanase 64.2 57 0.0012 37.8 11.2 123 5-137 109-257 (498)
56 TIGR02474 pec_lyase pectate ly 63.9 7.2 0.00016 41.8 3.7 50 227-279 45-94 (290)
57 KOG2204 Mannosyl-oligosacchari 63.0 48 0.001 38.4 10.0 40 164-204 532-571 (625)
58 PLN00119 endoglucanase 62.4 59 0.0013 37.6 10.9 125 7-137 116-265 (489)
59 PLN03009 cellulase 57.4 1E+02 0.0022 35.7 11.8 127 5-136 110-264 (495)
60 KOG2430 Glycosyl hydrolase, fa 56.4 1E+02 0.0022 33.7 10.6 179 4-198 200-398 (587)
61 PF05592 Bac_rhamnosid: Bacter 56.2 50 0.0011 37.9 9.2 122 4-138 164-311 (509)
62 PLN02308 endoglucanase 56.0 1E+02 0.0022 35.7 11.4 123 8-136 112-261 (492)
63 PLN02171 endoglucanase 53.5 4.2E+02 0.0091 31.7 16.2 126 7-137 115-265 (629)
64 KOG2244 Highly conserved prote 51.8 35 0.00075 39.5 6.6 90 48-137 568-671 (786)
65 PF09492 Pec_lyase: Pectic aci 51.4 43 0.00093 36.0 7.0 90 168-264 48-146 (289)
66 PLN02420 endoglucanase 51.2 1.3E+02 0.0028 35.1 11.3 127 6-137 125-276 (525)
67 PF13243 Prenyltrans_1: Prenyl 45.0 22 0.00047 31.5 3.1 32 3-36 37-68 (109)
68 KOG2204 Mannosyl-oligosacchari 42.0 1.2E+02 0.0027 35.2 9.0 120 1-129 274-412 (625)
69 PF06917 Pectate_lyase_2: Peri 41.5 43 0.00094 38.4 5.3 79 116-196 391-474 (557)
70 COG1188 Ribosome-associated he 41.3 52 0.0011 29.8 4.8 36 388-432 33-68 (100)
71 TIGR03000 plancto_dom_1 Planct 38.6 1.7E+02 0.0036 25.2 7.2 22 374-400 3-24 (75)
72 PHA02651 IL-1 receptor antagon 37.2 24 0.00051 34.7 2.2 39 580-621 105-143 (165)
73 TIGR02474 pec_lyase pectate ly 36.6 1.3E+02 0.0028 32.5 7.8 82 1-90 56-149 (290)
74 KOG2429 Glycosyl hydrolase, fa 36.5 1.1E+02 0.0025 35.5 7.7 27 229-255 374-400 (622)
75 PF05726 Pirin_C: Pirin C-term 35.6 78 0.0017 28.3 5.2 51 390-453 30-86 (104)
76 PF09492 Pec_lyase: Pectic aci 33.6 69 0.0015 34.4 5.2 80 1-91 51-145 (289)
77 COG1339 Transcriptional regula 31.3 49 0.0011 33.5 3.4 47 377-430 145-199 (214)
78 PF09586 YfhO: Bacterial membr 30.4 1.2E+02 0.0027 37.0 7.5 57 360-423 773-831 (843)
79 KOG2430 Glycosyl hydrolase, fa 28.4 1.6E+02 0.0035 32.2 6.8 36 100-138 351-388 (587)
80 PHA02811 putative host range p 27.8 81 0.0018 31.6 4.2 40 360-401 32-74 (197)
81 PF03287 Pox_C7_F8A: Poxvirus 26.7 94 0.002 30.1 4.3 40 360-401 32-74 (149)
82 cd00100 IL1 Interleukin-1 homo 25.4 43 0.00093 32.3 1.8 28 592-621 103-130 (144)
83 PF00340 IL1: Interleukin-1 / 24.9 57 0.0012 30.3 2.5 28 593-622 80-107 (120)
84 PF13243 Prenyltrans_1: Prenyl 24.5 16 0.00034 32.4 -1.3 59 14-91 1-59 (109)
85 TIGR03515 GldC gliding motilit 23.7 1.8E+02 0.0039 26.6 5.2 35 57-91 69-104 (108)
86 PLN00119 endoglucanase 23.7 1.4E+02 0.0031 34.5 5.8 63 179-254 203-265 (489)
87 PF14200 RicinB_lectin_2: Rici 23.4 4.1E+02 0.0089 23.2 7.7 43 575-621 48-91 (105)
88 PF13464 DUF4115: Domain of un 23.4 4.4E+02 0.0096 22.0 9.4 25 372-401 38-62 (77)
89 smart00125 IL1 Interleukin-1 h 23.1 50 0.0011 32.0 1.7 28 592-621 106-133 (147)
90 COG3603 Uncharacterized conser 21.5 1.7E+02 0.0037 27.4 4.7 32 375-426 20-51 (128)
91 PRK05659 sulfur carrier protei 21.1 1.1E+02 0.0024 24.8 3.2 30 388-422 31-60 (66)
No 1
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=1.6e-98 Score=801.86 Aligned_cols=425 Identities=25% Similarity=0.439 Sum_probs=385.4
Q ss_pred CcccCCchHHHHHHHHHHHHHHHhhhhCCCceeeccCCchh--hhhhccCCCcccccchHHHHHHHHHHHHHcCCHHHHH
Q 005721 1 MWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQF--DRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALR 78 (681)
Q Consensus 1 mya~t~D~~L~~k~~~~V~~l~~~Q~~~~dGYl~~~~~~~~--~~~~~~~~~W~pyy~~HkI~aGLld~y~~tG~~~aL~ 78 (681)
+++.++|++|.+++|++|+++++.|+ +||||+++....| .||.+++..|+.|+.+| +++|++|+|++||+.++|+
T Consensus 78 ~l~~~~dp~Lekr~D~vi~~~a~~Qd--edGYl~~~~q~~~pe~Rw~nlr~~HelY~agh-Lieg~va~~qaTGkr~lld 154 (589)
T COG3533 78 SLANKGDPELEKRIDEVVEELARAQD--EDGYLGGWFQADFPEERWGNLRPNHELYCAGH-LIEGGVAAHQATGKRRLLD 154 (589)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhc--cCCcccceeeccCchhhhhccccchHHHHhHH-HHhhhhHHHHhhCcchHHH
Confidence 36789999999999999999999999 9999999886433 58889999999666555 5567779999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhccccccccccccccccchHHHHHHHHHhcCCHHHHHHHhhccccccchhhhhcCCCCCCCcc
Q 005721 79 MTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHS 158 (681)
Q Consensus 79 va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~~yL~lA~~f~~~~~~~~l~~~~D~l~g~Ha 158 (681)
|++++|||+.+.+++... +.++-+++++|+++|++||++|||+|||+||++|.+++..+|++.+.|.+.+.||
T Consensus 155 V~~rlADhi~tvfgp~~~-------q~~g~~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~~rg~~P~~~rg~e~~~gHA 227 (589)
T COG3533 155 VVCRLADHIATVFGPEED-------QVPGYCGHPEIELALAELYRLTGDQRYLDLARRFIHQRGVEPLAQRGDELEGGHA 227 (589)
T ss_pred HHHHHHHhhhhhcCcccc-------ccccccCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhccChhhcCchhhhhhhH
Confidence 999999999988776422 3345578888999999999999999999999999999999999988899999999
Q ss_pred cCccccchHHHHHHHHhCChHHHHHHHHHHHHhhccceeeecCCCC-CCCCCCCcccccCCCCCcccchhhHHHHHHHHH
Q 005721 159 NTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSV-GEFWSDPKRLASNLDSNTEESCTTYNMLKVSRH 237 (681)
Q Consensus 159 nthiP~~~G~a~~Y~~TGd~~y~~aa~~f~d~v~~~h~y~tGG~s~-~E~f~~p~~l~~~l~~~~~EtCas~nmlkl~~~ 237 (681)
+++||+.+|+|++|+++||+.+++++.+||++|+++|+|+|||+|+ +|+|+.+|+|++ .+.|+|||+|||||||+++
T Consensus 228 vr~iyl~~G~A~l~~~~gDds~r~~~~~lW~~~t~k~~YitGG~g~~~E~F~~~ydlpn--~~~yAEtCas~~l~~~a~R 305 (589)
T COG3533 228 VRQIYLYIGAADLAEETGDDSLRQAAEFLWQNVTTRQSYITGGNGSSNEHFGPDYDLPN--RTAYAETCASYNLLKLARR 305 (589)
T ss_pred HHHHHHhhhHHHHHHHhCCHHHHHHHHHHHHHhhhhheEEecccCCccccCCccccCcc--cchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999965 599999999998 5799999999999999999
Q ss_pred HhcccCCchhHHHHHHHHhhhcccccCCCCCCeEEEecCCCCCCCCCcCCCCCCCCCCCccccCCCccCcccccccceEE
Q 005721 238 LFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTGIESFSKLGDSIYF 317 (681)
Q Consensus 238 Lf~~tgd~~YaD~~EralyN~ila~q~~~~~g~~~Y~~pl~~g~~k~~~~~~~~~~~~~f~CC~gtg~e~~~kl~~~iY~ 317 (681)
||.+++|.+|||+|||+|||++|++|++ |+++|+|+|||..+.. +.+.++++||||.||++|.+++++++||.
T Consensus 306 ml~~~~d~~yaDvmErALYN~iL~g~sl-Dg~~ffY~nPle~~gr------h~r~~w~~c~CCppn~ar~~as~g~yiY~ 378 (589)
T COG3533 306 MLGWGPDSQYADVMERALYNHILAGQSL-DGGMFFYFNPLESGGR------HSRQKWFSCWCCPPNGARSVASIGDYIYT 378 (589)
T ss_pred HhccCCCchHHHHHHHHHHhccccccCC-CCCeeEEecchhhCCC------ccccccccCCCCCCcHhhhhhhccceEEc
Confidence 9999999999999999999999999997 9999999999986542 12457788999999999999999999999
Q ss_pred eecCCCCcEEEEEeeCcEEEeeeCceEEEEEeCCCCCCCCceEEEEEEEeCCCCeeeEEEEeccCCccCCCcEEEECCee
Q 005721 318 EEEGKYPGVYIIQYISSRLDWKSGQIVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQD 397 (681)
Q Consensus 318 ~~~~~~~~LyVnLYipS~l~~~~~gv~v~q~t~~~yp~~~~~~V~itv~~~~~~~~ftL~LRIP~Wa~~~~~~v~VNG~~ 397 (681)
..+ ++||||||+.|+++.+..++.|+|+|+ |||++ +|+|+|... .+.+|+|+||||+||. .++++|||+.
T Consensus 379 ~~~---d~lyvnLy~~S~~~l~~~~v~irqet~--yPw~g--~v~ltv~~~-~p~~~tlaLRlP~W~a--~~tl~vNG~~ 448 (589)
T COG3533 379 RAD---DALYVNLYIASTADLPGDDVQIRQETN--YPWSG--QVKLTVERA-QPVLFTLALRLPAWCA--APTLRVNGKE 448 (589)
T ss_pred cCC---CEEEEEEeecccccccccceEEEeccC--CCCcC--eeEEEEecC-CCceEEEEEecccccC--CcEEEEcCcc
Confidence 976 689999999999999988899999887 99999 999999985 7899999999999999 7999999987
Q ss_pred cCCCCCCCEEEEEeecCCCCEEEEEecceeEEEecCCCcccccCeEEEeecceeeeeecc
Q 005721 398 LPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLAGHSI 457 (681)
Q Consensus 398 ~~~~~~ggy~~I~R~W~~GD~V~L~LPm~lr~~~~~d~~~~~~~~vAv~rGPlVlA~~~~ 457 (681)
+.....+||++|+|+|++||+|+|.|||++|+...|+++.. .+ ||+|||||||++..
T Consensus 449 ~~~~~~~GYa~i~R~Wq~GDrV~L~LpM~vr~y~nP~~r~~-~G--Ai~rGPlVyc~e~~ 505 (589)
T COG3533 449 VIQTRGKGYARISREWQAGDRVELMLPMPVRIYANPDVRHD-VG--AIMRGPLVYCAEAG 505 (589)
T ss_pred hhhccCCCeeeeeehhcCCCeEEEeecceeEeecCCcchhh-hh--hhhcCCeEEEEecC
Confidence 77677899999999999999999999999998888887644 12 99999999998654
No 2
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=100.00 E-value=1.9e-97 Score=841.66 Aligned_cols=430 Identities=35% Similarity=0.625 Sum_probs=388.5
Q ss_pred CcccCCchHHHHHHHHHHHHHHHhhhhCCCceeeccCCchhhhhhccCCCccc----ccchHHHHHHHHHHHHHcCCHHH
Q 005721 1 MWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAP----YYTIHKILAGLLDQYTYADNAEA 76 (681)
Q Consensus 1 mya~t~D~~L~~k~~~~V~~l~~~Q~~~~dGYl~~~~~~~~~~~~~~~~~W~p----yy~~HkI~aGLld~y~~tG~~~a 76 (681)
+|+.|+|++|++|++++|+.|++||+ +||||+++++.. .......|+| +|+.|||+.||+|+|++||+++|
T Consensus 72 ~~~~~~D~~l~~~~d~~V~~l~~~Q~--~dGYl~~~~~~~---~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~~tG~~~~ 146 (520)
T PF07944_consen 72 AYAYTGDPELKAKADEIVDELAAAQQ--PDGYLGTYPEER---NFNPDDRWAPDMHELYCLGKLLEGLIDYYEATGNERA 146 (520)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcc--CCceeccccccc---ccccccCCCCCccceehHhHHHHHHHHHHHHHCcHHH
Confidence 47899999999999999999999999 999999998753 2235678999 99999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccccccccccccccchHHHHHHHHHhcCCHHHHHHHhhccccccchh--hhhcCCCCC
Q 005721 77 LRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGL--LALQADDIS 154 (681)
Q Consensus 77 L~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~~yL~lA~~f~~~~~~~~--l~~~~D~l~ 154 (681)
|++++|++||+.++.... ..+....++..|+|||+++|+|||++|||++||+||++|.+..+.++ +....|.+.
T Consensus 147 L~v~~k~ad~~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~~~~~~~~d~~~ 222 (520)
T PF07944_consen 147 LDVATKLADWVYRRLSRL----GPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQRGFDPYDLAYGQDHLP 222 (520)
T ss_pred HHHHHHHHHHHHHHhccC----CHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCCchhhcCccCC
Confidence 999999999996655432 11222233446899999999999999999999999999999999988 888999999
Q ss_pred CCcccCccccch-------HHHHHHHHhCChHHHHHHHHHHHHhhccceeeecCCCCC---CCCCCCcccccCCCCCccc
Q 005721 155 GFHSNTHIPIVI-------GSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVG---EFWSDPKRLASNLDSNTEE 224 (681)
Q Consensus 155 g~HanthiP~~~-------G~a~~Y~~TGd~~y~~aa~~f~d~v~~~h~y~tGG~s~~---E~f~~p~~l~~~l~~~~~E 224 (681)
+.|+|+|+|.++ |++++|++|||++|++++++||++|+++|||+|||+|++ |+|++++.+++. ..++|
T Consensus 223 ~~~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~~~E~f~~~~~lp~~--~~~~E 300 (520)
T PF07944_consen 223 GRHANTHIGHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSDHEGEHFGPPYDLPNR--LAYAE 300 (520)
T ss_pred CccccceeeEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCCCCCccCCCCCCCCcC--CCCcc
Confidence 999999999988 999999999999999999999999999999999999999 999999998873 45599
Q ss_pred chhhHHHHHHHHHHhcccCCchhHHHHHHHHhhhcccccCCCCCCeEEEecCCCCCCCCCcCCCCCCCCCCCccccCCCc
Q 005721 225 SCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSDSFWCCYGTG 304 (681)
Q Consensus 225 tCas~nmlkl~~~Lf~~tgd~~YaD~~EralyN~ila~q~~~~~g~~~Y~~pl~~g~~k~~~~~~~~~~~~~f~CC~gtg 304 (681)
||++||||||+++||++|||++|+|+|||++||++|++|++ +++.++|++||+++..+... ..+++++++||||+||+
T Consensus 301 tCas~~~~~~~~~L~~~tgd~~yaD~~Er~lyN~~la~~~~-d~~~~~Y~~pl~~~~~~~~~-~~~~~~~~~~~CC~~n~ 378 (520)
T PF07944_consen 301 TCASVNMMKLARRLFRLTGDARYADYYERALYNALLAGQSP-DGGSFFYFNPLNSGPYKHRW-KNYRTPWFSFWCCPGNG 378 (520)
T ss_pred ccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhcccccccCC-CCCeeEEecCCccCcCcccc-ccccCCCCCCCCCcchH
Confidence 99999999999999999999999999999999999999997 99999999999887655321 35677889999999999
Q ss_pred cCcccccccceEEeecCCCCcEEEEEeeCcEEEeeeCc--eEEEEEeCCCCCCCCceEEEEEEEeCCCCeeeEEEEeccC
Q 005721 305 IESFSKLGDSIYFEEEGKYPGVYIIQYISSRLDWKSGQ--IVVNQKVDPVVSWDPYLRVTLTFSSKGSGLTTSLNLRIPT 382 (681)
Q Consensus 305 ~e~~~kl~~~iY~~~~~~~~~LyVnLYipS~l~~~~~g--v~v~q~t~~~yp~~~~~~V~itv~~~~~~~~ftL~LRIP~ 382 (681)
+|+++||+++||++++ ++||||||+||+++|+.++ |+|+|+|+ |||++ +|+|+|++. ++.+|+|+||||+
T Consensus 379 ~r~~~~~~~~iy~~~~---~~l~v~ly~~s~~~~~~~~~~v~i~q~T~--yP~~~--~v~i~v~~~-~~~~f~l~lRIP~ 450 (520)
T PF07944_consen 379 ARGWAKLPDYIYFRDD---DGLYVNLYIPSELTWPVGGGTVTITQETD--YPFEG--TVRITVSPD-KPVPFTLRLRIPS 450 (520)
T ss_pred HHHHHHHhhhheEecC---CEEEEEEEcceEEEEEECCcEEEEEEecC--CCCCC--CEEEEEEcC-CCccEEEEEEccC
Confidence 9999999999999985 6999999999999999988 77777766 99999 899999764 6899999999999
Q ss_pred CccCCCcEEEECCee-cCCCCCCCEEEEEeecCCCCEEEEEecceeEEEecCCCcccccCeEEEeecceeee
Q 005721 383 WTSSNGAKATLNGQD-LPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAIQDDRPEYASIQAILYGPYVLA 453 (681)
Q Consensus 383 Wa~~~~~~v~VNG~~-~~~~~~ggy~~I~R~W~~GD~V~L~LPm~lr~~~~~d~~~~~~~~vAv~rGPlVlA 453 (681)
||+ +++|+|||++ .....++||++|+|+|++||+|+|+|||++|++++++.++..++.+||+|||||||
T Consensus 451 Wa~--~~~i~vNG~~~~~~~~~~gy~~i~r~W~~gD~v~l~lpm~~r~~~~~~~~~~~~~~vAv~rGPlV~a 520 (520)
T PF07944_consen 451 WAK--GATIRVNGEPVVDTAVPGGYLTIEREWKDGDVVELRLPMEVRLEPANPRVPDDPGRVAVMRGPLVYA 520 (520)
T ss_pred CCC--CcEEEECCEeCCCCcCCCCeEEEEeeccCCcEEEEEecCeeEEEeCCCCCccCCCeEEEEeCchhcC
Confidence 998 7999999999 56667999999999999999999999999999999777777788999999999997
No 3
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=99.63 E-value=6.4e-16 Score=146.22 Aligned_cols=110 Identities=21% Similarity=0.256 Sum_probs=87.6
Q ss_pred ccccCCCCCCCceEEeecCCcceEEecCCCCCC-----cceEEEeeccCCCCCeEEEeecCCcceEEEEeeccCCCCcEE
Q 005721 545 SVMLEPFDSPGMLVIQHETDDELVVTDSFIAQG-----SSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTK 619 (681)
Q Consensus 545 ~v~lepfd~Pg~~v~~~~~~~~l~v~~~~~~~~-----~s~f~~vpgl~g~~~~vsle~~~~pg~~~~~~~~~~~g~~~~ 619 (681)
+++++.++.|+++|+|.+... .+++..++.. |++|+|||||.+ +++|||||.++||.|||+. +..|+
T Consensus 2 ~~~~~s~~~~~ryirh~~~~~--~~~~v~~~s~~~~r~da~f~vvpGLa~-~~~vSfES~~~PG~yLrh~-----~~~v~ 73 (142)
T PF05270_consen 2 SLRLTSPNYPDRYIRHRGSLV--RLDPVSSSSSALDRADATFRVVPGLAD-SSCVSFESVNYPGYYLRHS-----NFRVR 73 (142)
T ss_dssp EEEEEESSSTTEEEEEETTEE--EEEES-SSGGHHHHHGG-EEEEE-SS--TTCEEEEESSSTTEEEEEE-----TTEEE
T ss_pred eEEEECCCCCCeEEEEcCceE--EEeeccCCcchhhccCceEEEEEccCC-CCEEEEEECCCCCcEEEEE-----CCEEE
Confidence 467899999999999998844 4444444444 899999999988 5899999999999999995 88999
Q ss_pred EEeccCCCccccccccceecccCCcccCCceEEEecCCCcchhcc
Q 005721 620 LGCISESTEAGFNNAASFVIEKGLSEYHPISFVAKGANRNFLLAP 664 (681)
Q Consensus 620 ~~~~~~~~~~~f~~~asf~~~~gl~~~~~~sf~a~g~~~~~l~~p 664 (681)
|+ +. ++++.|.++|+|...+||+...-+||+...-+..||.+=
T Consensus 74 l~-~~-d~s~~F~~dATF~~~~Gl~~~g~~sfeS~n~Pg~ylrh~ 116 (142)
T PF05270_consen 74 LE-KN-DGSALFREDATFCPRPGLAGPGYVSFESYNYPGRYLRHY 116 (142)
T ss_dssp EE-E---SSHHHHHHT-EEEEE-SSSTTEEEEEESSSTTEEEEEE
T ss_pred Ee-ec-CCCccccCCceEEEecCCCCCCcceEEEecCCCeEEEEE
Confidence 99 55 778889999999999999995557999999999998753
No 4
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins. L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.
Probab=99.27 E-value=1.5e-11 Score=116.57 Aligned_cols=125 Identities=18% Similarity=0.257 Sum_probs=87.9
Q ss_pred eEEEecCCCceEeeecCCC-CCccccceEEEEEecCCCCCCcccccCCCCcccccCCCCCCCceEEeecCCcceEEecCC
Q 005721 495 KFVLTNSNQSITMEKFPKS-GTDAALHATFRLILNDSSGSEFSSLNDFIGKSVMLEPFDSPGMLVIQHETDDELVVTDSF 573 (681)
Q Consensus 495 ~~~~~~~~~~~~~~~~p~~-g~~~~~~~~~r~~~~~~~~~~~~~p~~~~g~~v~lepfd~Pg~~v~~~~~~~~l~v~~~~ 573 (681)
.-.+.+.+..+.+.+.... ++-....++||++.+-.+ ...|.+|+-|.||.||+|.+. .|+++...
T Consensus 12 ~ryirh~~~~~~~~~v~~~s~~~~r~da~f~vvpGLa~-----------~~~vSfES~~~PG~yLrh~~~--~v~l~~~d 78 (142)
T PF05270_consen 12 DRYIRHRGSLVRLDPVSSSSSALDRADATFRVVPGLAD-----------SSCVSFESVNYPGYYLRHSNF--RVRLEKND 78 (142)
T ss_dssp TEEEEEETTEEEEEES-SSGGHHHHHGG-EEEEE-SS------------TTCEEEEESSSTTEEEEEETT--EEEEEE--
T ss_pred CeEEEEcCceEEEeeccCCcchhhccCceEEEEEccCC-----------CCEEEEEECCCCCcEEEEECC--EEEEeecC
Confidence 3345666777777774433 333455799999965322 237899999999999999877 66665554
Q ss_pred CC---CCcceEEEeeccCCCCCeEEEeecCCcceEEEEeeccCCCCcEEEEecc--CCCccccccccceec
Q 005721 574 IA---QGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLGCIS--ESTEAGFNNAASFVI 639 (681)
Q Consensus 574 ~~---~~~s~f~~vpgl~g~~~~vsle~~~~pg~~~~~~~~~~~g~~~~~~~~~--~~~~~~f~~~asf~~ 639 (681)
.+ ..|..|..+|||.+ +|.|||||.+.||+|||+. +..|+|. +. .+..+.|+++++|.+
T Consensus 79 ~s~~F~~dATF~~~~Gl~~-~g~~sfeS~n~Pg~ylrh~-----~~~l~l~-~~~g~d~~~~f~~datf~v 142 (142)
T PF05270_consen 79 GSALFREDATFCPRPGLAG-PGYVSFESYNYPGRYLRHY-----NGELYLA-PIGGYDNTDSFRADATFRV 142 (142)
T ss_dssp SSHHHHHHT-EEEEE-SSS-TTEEEEEESSSTTEEEEEE-----TTEEEEE-ESSSGG-SHHHHHHT-EEE
T ss_pred CCccccCCceEEEecCCCC-CCcceEEEecCCCeEEEEE-----CCEEEEe-cCCCcCcchhhccccEEeC
Confidence 43 27889999999999 7999999999999999996 8899999 42 133567889999863
No 5
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=98.73 E-value=3.3e-07 Score=100.32 Aligned_cols=284 Identities=13% Similarity=0.049 Sum_probs=159.8
Q ss_pred cccCCchHHHHHHHHHHHHHHHhhhhCC-CceeeccCCchhhhhhccCCCcccccchHHHHHHHHHHHHHcCCHHHHHHH
Q 005721 2 WASTHNESLKEKMSAVVSALSACQKEIG-SGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMT 80 (681)
Q Consensus 2 ya~t~D~~L~~k~~~~V~~l~~~Q~~~~-dGYl~~~~~~~~~~~~~~~~~W~pyy~~HkI~aGLld~y~~tG~~~aL~va 80 (681)
|..++|++.++.++..++.|.+.-.... .||+..++..- ........ -|..=.++.|+..+|+.+|++++|+.|
T Consensus 66 ~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g-~~~~~~~~----l~~~a~~l~ala~~~~at~d~~~l~~A 140 (384)
T cd00249 66 YLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDG-RPVDATKD----LYSHAFALLAAAQAAKVGGDPEARALA 140 (384)
T ss_pred HHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCC-CCcccccc----hHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4457899999999999999998543112 47887764210 00000011 222223667888999999999999999
Q ss_pred HHHHHHHHHHhhhhhhccc--cccccccccc--cccchHHHHHHHHHhcCCHHHHHHHhhccc---cccchhh------h
Q 005721 81 TWMVEYFYNRVQNVIKKYS--IERHWQTLNE--EAGGMNDVLYKLFCITQDPKHLMLAHLFDK---PCFLGLL------A 147 (681)
Q Consensus 81 ~~~ad~~~~~~~~~~~~~~--~~~~~~~l~~--E~GGmne~L~~LY~~TGd~~yL~lA~~f~~---~~~~~~l------~ 147 (681)
+++++++.+++-+.-..+- ....+..... ...=+.++|.+||++|||++|++.|+.+.+ +.+.++. .
T Consensus 141 ~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~~~~~~~~G~~~e~ 220 (384)
T cd00249 141 EETIDLLERRFWEDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILDRFIDAESGVVREH 220 (384)
T ss_pred HHHHHHHHHHhccCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCcccCeEEEE
Confidence 9999999987631000000 0000111111 110014789999999999999999975421 1111110 0
Q ss_pred hcCC-CCCCCcccC-ccc-----cchHHHHHHHHhCChHHHHHHHHHHHHhhcccee-e-ecCCCCCCCCCCCcccccCC
Q 005721 148 LQAD-DISGFHSNT-HIP-----IVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTY-A-TGGTSVGEFWSDPKRLASNL 218 (681)
Q Consensus 148 ~~~D-~l~g~Hant-hiP-----~~~G~a~~Y~~TGd~~y~~aa~~f~d~v~~~h~y-~-tGG~s~~E~f~~p~~l~~~l 218 (681)
...| .+....... -.| .+.....+++++||+.|++.++..|+.+.+ ++. . .||.-. .+..+... .
T Consensus 221 ~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~-~~~d~~~G~~~~--~~~~~~~~---~ 294 (384)
T cd00249 221 FDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALA-LGWDPERGGLYY--SFLDDGGL---L 294 (384)
T ss_pred ECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH-hCcCccCCCEEE--eeECCCCC---c
Confidence 0011 000000001 112 123456779999999999999999998875 332 2 232211 01111111 1
Q ss_pred CCCcccchhhHHHHHHHHHHhcccCCchhHHHHHHH---HhhhcccccCCCCCCeEEEecCCCCCCCCCcCCCCCCCCCC
Q 005721 219 DSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERS---LTNGVLGIQRGTEPGVMIYLLPLAPGSSKERSYHHWGTPSD 295 (681)
Q Consensus 219 ~~~~~EtCas~nmlkl~~~Lf~~tgd~~YaD~~Era---lyN~ila~q~~~~~g~~~Y~~pl~~g~~k~~~~~~~~~~~~ 295 (681)
...+.-.....++++....|+++|||.+|.+.++++ +++..+... .++.+.+..+-+...... . ..|.+.++
T Consensus 295 ~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~~~~~~~~~d~~---~G~w~~~~~~~g~~~~~~-~-~~~~~~yH 369 (384)
T cd00249 295 EDDDKRWWPQTEALKAALALAGITGDERYWQWYQRAWAYLWRHFIDPE---YGLWFGYLDADGKVLLTP-K-GPAKTFYH 369 (384)
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCC---CCcceeeECCCCCCcCCC-C-CCCCCCcc
Confidence 122444455778888888899999999999999887 444444332 234555555432211110 0 35666677
Q ss_pred CccccC
Q 005721 296 SFWCCY 301 (681)
Q Consensus 296 ~f~CC~ 301 (681)
.+-||.
T Consensus 370 ~~~a~~ 375 (384)
T cd00249 370 VVRALY 375 (384)
T ss_pred HHhHHH
Confidence 766663
No 6
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=98.33 E-value=3.1e-05 Score=84.77 Aligned_cols=252 Identities=12% Similarity=0.107 Sum_probs=139.9
Q ss_pred HHHHHHHHHHHhh-hhCCCceeeccCCchhhhhhccCCCcccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005721 13 KMSAVVSALSACQ-KEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRV 91 (681)
Q Consensus 13 k~~~~V~~l~~~Q-~~~~dGYl~~~~~~~~~~~~~~~~~W~pyy~~HkI~aGLld~y~~tG~~~aL~va~~~ad~~~~~~ 91 (681)
.++.+++.+.... +.-..||+...... .......+..|.--. +.-++-.+|..+|+++++++|++..+++.+.+
T Consensus 15 ~~~~~~~fw~~~~~d~~~gg~~~~l~~~-g~~~~~~k~~~~~ar----~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~ 89 (384)
T cd00249 15 LLEDLLPFWLEAGLDREAGGFFECLDRD-GQPFDTDRRLWLQAR----QVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHG 89 (384)
T ss_pred HHHHHHHHHHhcCCCCCCCCeEEEECCC-CCCCCCCCeEEEecH----HHHHHHHHHHhcCChhHHHHHHHHHHHHHHhC
Confidence 3456666666632 21134777655321 000111223333332 44566678999999999999999999998865
Q ss_pred hhhh-hcc--ccccccccccc-----cccchHHHHHHHHHhcCCHHHHHHHhhccc---ccc-------chhhhhcCCCC
Q 005721 92 QNVI-KKY--SIERHWQTLNE-----EAGGMNDVLYKLFCITQDPKHLMLAHLFDK---PCF-------LGLLALQADDI 153 (681)
Q Consensus 92 ~~~~-~~~--~~~~~~~~l~~-----E~GGmne~L~~LY~~TGd~~yL~lA~~f~~---~~~-------~~~l~~~~D~l 153 (681)
.... .++ ...+-+.+... +..=+..+|.++|++|||++||++|+...+ ..+ +.....+....
T Consensus 90 ~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~ 169 (384)
T cd00249 90 RDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPGTPPY 169 (384)
T ss_pred cCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCC
Confidence 4210 011 00000111100 000123688899999999999999965321 111 11100000112
Q ss_pred CCCcccCccccchHHHHHHHHhCChHHHHHHHHHHHHhhccceee--ecCCCCCCCCCCCcccccCCCCCcccchhhHHH
Q 005721 154 SGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYA--TGGTSVGEFWSDPKRLASNLDSNTEESCTTYNM 231 (681)
Q Consensus 154 ~g~HanthiP~~~G~a~~Y~~TGd~~y~~aa~~f~d~v~~~h~y~--tGG~s~~E~f~~p~~l~~~l~~~~~EtCas~nm 231 (681)
.+ .|.|.-.+.+...++++|||+.|++.++..++.+.+ +.+- .|+.- |.+..+..+.........+--...++
T Consensus 170 ~~--~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~-~~~~~~~G~~~--e~~~~~~~~~~~~~~~~~~Pgh~~e~ 244 (384)
T cd00249 170 RG--SNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILD-RFIDAESGVVR--EHFDEDWNPYNGDKGRHQEPGHQFEW 244 (384)
T ss_pred CC--CChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HhcCcccCeEE--EEECCCCCCCcCcCCCcCCCchHHHH
Confidence 22 344444567788899999999999999999998875 4432 45442 55432211111001111222223456
Q ss_pred HHHHHHHhcccCCchhHHHHHHHHhhhcccc-cCCCCCCeEEE-ecC
Q 005721 232 LKVSRHLFRWTKEIAYADYYERSLTNGVLGI-QRGTEPGVMIY-LLP 276 (681)
Q Consensus 232 lkl~~~Lf~~tgd~~YaD~~EralyN~ila~-q~~~~~g~~~Y-~~p 276 (681)
+++.-+|.++++|.+|.+.++++ ++.++.. .++ +.|.++| ..+
T Consensus 245 a~~ll~l~~~~~~~~~~~~a~~~-~~~~~~~~~d~-~~G~~~~~~~~ 289 (384)
T cd00249 245 AWLLLRIASRSGQAWLIEKARRL-FDLALALGWDP-ERGGLYYSFLD 289 (384)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHH-HHHHHHhCcCc-cCCCEEEeeEC
Confidence 66777788889999999999886 4666653 344 5566666 544
No 7
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=98.06 E-value=8.6e-05 Score=85.39 Aligned_cols=241 Identities=17% Similarity=0.130 Sum_probs=136.1
Q ss_pred CchHHHHHHHHHHHHHHHhhhh--CCCceeec-cC--Cchhhhhh--ccCCCcccccchHHHHHHHHHHHHHcCCHHHHH
Q 005721 6 HNESLKEKMSAVVSALSACQKE--IGSGYLSA-FP--TEQFDRLE--ALIPVWAPYYTIHKILAGLLDQYTYADNAEALR 78 (681)
Q Consensus 6 ~D~~L~~k~~~~V~~l~~~Q~~--~~dGYl~~-~~--~~~~~~~~--~~~~~W~pyy~~HkI~aGLld~y~~tG~~~aL~ 78 (681)
.|.-++++.+...+.++..|-. ...+...+ .+ ......|+ .....|.--..+| -+.|+.-.|..++|+++++
T Consensus 5 ~~~~~~~~~~~~~~~~l~~~~d~ll~~~r~~agl~~~~~~~g~we~~~~~~~~~~~~~g~-wl~a~a~~~~~~~D~~l~~ 83 (520)
T PF07944_consen 5 TDGFWKRRQELNRAYLLPLDPDRLLYNFRSHAGLPNFAIAYGGWEGEFPGWWFRGHDVGK-WLEAAAYAYAYTGDPELKA 83 (520)
T ss_pred CcHHHHHHHHHHHHHHHHhHHHHHhhhcCcccCCCCccccCCCCccCCCCCccCCCcHHH-HHHHHHHHHHHCCCHHHHH
Confidence 3567888888888888877741 12233222 11 11122233 1112233334444 4455557888999999999
Q ss_pred HHHHHHHHHHHHhhh--hhhcc------cccccccc-cccc--ccchHHHHHHHHHhcCCHHHHHHHhhccccc--cchh
Q 005721 79 MTTWMVEYFYNRVQN--VIKKY------SIERHWQT-LNEE--AGGMNDVLYKLFCITQDPKHLMLAHLFDKPC--FLGL 145 (681)
Q Consensus 79 va~~~ad~~~~~~~~--~~~~~------~~~~~~~~-l~~E--~GGmne~L~~LY~~TGd~~yL~lA~~f~~~~--~~~~ 145 (681)
.+.++.+++.+.... .+... .....|.. .|+- .|-|.++|+.-|+.||+++.|+.|.++-+-- ....
T Consensus 84 ~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~~~~ 163 (520)
T PF07944_consen 84 KADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDYYEATGNERALDVATKLADWVYRRLSR 163 (520)
T ss_pred HHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHhcc
Confidence 999999999875432 01111 11122332 0100 1225589999999999999999998874311 0111
Q ss_pred hhhcCCCCCCCcccCccccchHHHHHHHHhCChHHHHHHHHHHHHhhccceeeecCCCCCCCCCCCcccccCCCCCcccc
Q 005721 146 LALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEES 225 (681)
Q Consensus 146 l~~~~D~l~g~HanthiP~~~G~a~~Y~~TGd~~y~~aa~~f~d~v~~~h~y~tGG~s~~E~f~~p~~l~~~l~~~~~Et 225 (681)
+. .+.........|.=+..+.+++|++|||++|++.|+.|.+.-...- .+ .+... +.++.. ...+.+.
T Consensus 164 ~~--~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~~~~~~~------~~-~~~~~--d~~~~~-~a~~~~~ 231 (520)
T PF07944_consen 164 LG--PEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVDQRGFDP------YD-LAYGQ--DHLPGR-HANTHIG 231 (520)
T ss_pred CC--HHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------Cc-hhhcC--ccCCCc-cccceee
Confidence 10 0000011112333345788999999999999999999987532111 00 11111 112221 1122233
Q ss_pred hhh--HHHHHHHHHHhcccCCchhHHHHHHHHhhhc
Q 005721 226 CTT--YNMLKVSRHLFRWTKEIAYADYYERSLTNGV 259 (681)
Q Consensus 226 Cas--~nmlkl~~~Lf~~tgd~~YaD~~EralyN~i 259 (681)
.+. ..+.+-.-.+++.|||.+|.+..|+..-|-+
T Consensus 232 h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~ 267 (520)
T PF07944_consen 232 HAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVV 267 (520)
T ss_pred EEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 332 3355556679999999999999999886644
No 8
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=97.94 E-value=3e-05 Score=85.44 Aligned_cols=231 Identities=16% Similarity=0.117 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHhhhhCCCc-eeeccCCchhhhhhccCCCcccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 005721 10 LKEKMSAVVSALSACQKEIGSG-YLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFY 88 (681)
Q Consensus 10 L~~k~~~~V~~l~~~Q~~~~dG-Yl~~~~~~~~~~~~~~~~~W~pyy~~HkI~aGLld~y~~tG~~~aL~va~~~ad~~~ 88 (681)
++++++.+++.|.+.=.....| +.+.++.. ..| |-..| ++..++|+|+.+|+++..+++.+......
T Consensus 2 ~~~~A~~~~~~l~~~y~~~~~g~~~g~~~~~---------~~~--W~~a~-~~~~~~d~~~~t~d~~y~~~~~~~~~~~~ 69 (370)
T PF03663_consen 2 IKDAAKSAADALQKYYNGNASGNIPGLFPSP---------YYW--WWQAV-MLSALIDYYRRTGDPTYNDLIQNALLNQR 69 (370)
T ss_dssp ------HHHHHHHHHHB-SSTTT-B-SEES-----------H---HHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhCCCCCCCCCCCCCCC---------CCc--ChHHH-HHHHHHHHHHHhCcchHHHHHHHHHHHHh
Confidence 4566777777777322211122 23333221 123 22344 56778899999999998888877666665
Q ss_pred HHhhh-hhhccccccccccccccccchHHHHHHHHHhcCCH-----HHHHHHhhccc---cc---------cchhhhhcC
Q 005721 89 NRVQN-VIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDP-----KHLMLAHLFDK---PC---------FLGLLALQA 150 (681)
Q Consensus 89 ~~~~~-~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~-----~yL~lA~~f~~---~~---------~~~~l~~~~ 150 (681)
..... ..+... ..+ ....-.+=+..++.++|++||++ +||++|+..-+ .. ++|......
T Consensus 70 ~~~~~~~~~~~~--~~~-~~~DD~aw~~la~l~aye~t~~~~~~~~~yL~~A~~i~~~~~~~wd~~~cgGGi~W~~~~~~ 146 (370)
T PF03663_consen 70 GPNYDSYNPSNG--SGD-RYYDDNAWWALALLRAYELTGDQPSDNPKYLDLAKEIFDFLISGWDDTSCGGGIWWSIDDTN 146 (370)
T ss_dssp HHTTSSS--S---------BHHHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHTB-SGG-GS-BEEET----
T ss_pred cccccccccccc--ccc-CccChHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHhcCCccCCCCccccccccC
Confidence 43211 100000 000 00000000236899999999999 99999987521 11 111100000
Q ss_pred CCCCCCcccCccccchHHHHHHHHhCChHHHHHHHHHHHHhhccceeeecCCCCCCCCCCCcccccCC-CCCcccchhhH
Q 005721 151 DDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNL-DSNTEESCTTY 229 (681)
Q Consensus 151 D~l~g~HanthiP~~~G~a~~Y~~TGd~~y~~aa~~f~d~v~~~h~y~tGG~s~~E~f~~p~~l~~~l-~~~~~EtCas~ 229 (681)
..-....+.+..|.++.++++|++|||+.|++.|+..|+.+.+.+++ ..+.+.--+.+...- -....++--||
T Consensus 147 ~~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~A~~~~~W~~~~~L~------d~~~g~v~Dg~~~~~~c~~~~~~~~TY 220 (370)
T PF03663_consen 147 SGYDYKNAISNGPAAQLAARLYRITGDQTYLDWAKKIYDWMRDSGLI------DPSTGLVYDGINIDGNCTNINKTKWTY 220 (370)
T ss_dssp TEEEEEEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHB--------TTS-B--EE-TTSSS-B-TT---HH
T ss_pred CCCCcccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhcceeE------ECCCcEEEeCCccCCCCCcCCCceech
Confidence 00000112223334566899999999999999999999999864554 111010000111000 01122333334
Q ss_pred H---HHHHHHHHhcccCCc-hhHHHHHHHHhhhcccc
Q 005721 230 N---MLKVSRHLFRWTKEI-AYADYYERSLTNGVLGI 262 (681)
Q Consensus 230 n---mlkl~~~Lf~~tgd~-~YaD~~EralyN~ila~ 262 (681)
| +|.-+..|++.|++. .|.|..++++ |+++..
T Consensus 221 NqG~~l~a~~~Ly~~T~~~~~yl~~A~~la-~~~~~~ 256 (370)
T PF03663_consen 221 NQGVFLGAAAYLYNATNDEQTYLDRAEKLA-DAAINH 256 (370)
T ss_dssp HHHHHHHHHHHHHHHH--H-HHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHH-HHHHHH
Confidence 3 677788999999876 9999999987 454443
No 9
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0012 Score=76.26 Aligned_cols=137 Identities=19% Similarity=0.087 Sum_probs=87.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhhcc---ccccchhhhhcCCCCCCCccc----------CccccchHHHHHHHHhCChHH
Q 005721 114 MNDVLYKLFCITQDPKHLMLAHLFD---KPCFLGLLALQADDISGFHSN----------THIPIVIGSQMRYEVTGDQLH 180 (681)
Q Consensus 114 mne~L~~LY~~TGd~~yL~lA~~f~---~~~~~~~l~~~~D~l~g~Han----------thiP~~~G~a~~Y~~TGd~~y 180 (681)
|..+|++.+.++||++|+++|++.. ...+.. |.|...+-. .+.-.+.|...+|++|+|..|
T Consensus 416 mi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~------~rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~y 489 (667)
T COG1331 416 MIAALAEAGRVLGDPEYLEAAERAADFILDNLYV------DRLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAY 489 (667)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcc------cchheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHH
Confidence 7789999999999999999998742 222211 122111111 112234678889999999999
Q ss_pred HHHHHHHHHHhhccceeeecCC----CCCCCCCCCcccc---cCCCCCcccchhhHHHHHHHHHHhcccCCchhHHHHHH
Q 005721 181 KTISMFFMDIVNSSHTYATGGT----SVGEFWSDPKRLA---SNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYER 253 (681)
Q Consensus 181 ~~aa~~f~d~v~~~h~y~tGG~----s~~E~f~~p~~l~---~~l~~~~~EtCas~nmlkl~~~Lf~~tgd~~YaD~~Er 253 (681)
++.|+.+++.+..+--=..||+ +.+|. |. ....+.-.++=+++...-|. +|-++|||.+|.|..|+
T Consensus 490 L~~A~~L~~~~i~~f~d~~gGf~~t~~~~~~------l~ir~~~~~D~a~~S~na~~~~~L~-~Ls~ltg~~~y~e~A~~ 562 (667)
T COG1331 490 LEKAIELADEAIADFWDDEGGFYDTPSDSED------LLIRPKEPTDGATPSGNAVAAQALL-RLSLLTGDARYLEAAED 562 (667)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcccCCCcccc------cccCCCCCCCCCCCCHHHHHHHHHH-HHHhhcCchhHHHHHHH
Confidence 9999999999874222233342 11222 21 11123344555665554444 48889999999999999
Q ss_pred HH--hhhccccc
Q 005721 254 SL--TNGVLGIQ 263 (681)
Q Consensus 254 al--yN~ila~q 263 (681)
+| +=+.+...
T Consensus 563 ~L~a~~~~~~~~ 574 (667)
T COG1331 563 ILQAFAGLAERA 574 (667)
T ss_pred HHHHHHHHHHhC
Confidence 99 55555543
No 10
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=97.56 E-value=0.00064 Score=74.98 Aligned_cols=132 Identities=14% Similarity=0.110 Sum_probs=76.7
Q ss_pred HHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHHhhhhhhccccccccccc----------cccccchHHHHHHHHHhc
Q 005721 61 LAGLLDQYTYADNA-----EALRMTTWMVEYFYNRVQNVIKKYSIERHWQTL----------NEEAGGMNDVLYKLFCIT 125 (681)
Q Consensus 61 ~aGLld~y~~tG~~-----~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l----------~~E~GGmne~L~~LY~~T 125 (681)
-.+++++|+.+|++ +.|+.+++..+++..+..... -...-+|..- .+.-|-.-...++||++|
T Consensus 94 ~la~l~aye~t~~~~~~~~~yL~~A~~i~~~~~~~wd~~~--cgGGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~~t 171 (370)
T PF03663_consen 94 ALALLRAYELTGDQPSDNPKYLDLAKEIFDFLISGWDDTS--CGGGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYRIT 171 (370)
T ss_dssp HHHHHHHHHHH--H-----HHHHHHHHHHHHHHHTB-SGG---GS-BEEET----TEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHhcCCcc--CCCCccccccccCCCCCcccccchHHHHHHHHHHHHhc
Confidence 34567999999999 999999999999986544321 0112235421 011122346788999999
Q ss_pred CCHHHHHHHhhccc---c-ccchhhhhc-CCCC----------CCCcccCccccchHHHHHHHHhCCh-HHHHHHHHHHH
Q 005721 126 QDPKHLMLAHLFDK---P-CFLGLLALQ-ADDI----------SGFHSNTHIPIVIGSQMRYEVTGDQ-LHKTISMFFMD 189 (681)
Q Consensus 126 Gd~~yL~lA~~f~~---~-~~~~~l~~~-~D~l----------~g~HanthiP~~~G~a~~Y~~TGd~-~y~~aa~~f~d 189 (681)
||++||+.|++..+ . .+.++.... .|.+ ...+...+...+.|++.+|++|+++ .|++.++..-+
T Consensus 172 ~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la~ 251 (370)
T PF03663_consen 172 GDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLAD 251 (370)
T ss_dssp --HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 99999999998632 1 222221000 0000 0112223333456788899999887 99999999999
Q ss_pred Hhhcc
Q 005721 190 IVNSS 194 (681)
Q Consensus 190 ~v~~~ 194 (681)
-+.++
T Consensus 252 ~~~~~ 256 (370)
T PF03663_consen 252 AAINH 256 (370)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98753
No 11
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=97.46 E-value=0.0014 Score=70.01 Aligned_cols=175 Identities=13% Similarity=0.007 Sum_probs=106.4
Q ss_pred cccCCchHHHHHHHHHHHHHHHhhhhCCCceeeccCCchhhhhhccCCCcccccchHHHHHHHHHHHHHcCCHHHHHHHH
Q 005721 2 WASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTT 81 (681)
Q Consensus 2 ya~t~D~~L~~k~~~~V~~l~~~Q~~~~dGYl~~~~~~~~~~~~~~~~~W~pyy~~HkI~aGLld~y~~tG~~~aL~va~ 81 (681)
|.. +|+++.+.+.++++.|.+.... .+.+. ..+.. ......|.-=+.+ |+..|+..|+.+++++.++.+.
T Consensus 96 ~~~-~~~~~l~~a~~~~~~l~~~~~~-~~~~~-~~~~~-----~~~~~G~~hG~aG--i~~~L~~l~~~t~d~~~l~~A~ 165 (321)
T cd04791 96 ART-GDPALLEAAAKIAELLAEALER-GDPAL-LWPDF-----DRVDHGLLHGWAG--IALFLLRLYKATGDSRYLELAE 165 (321)
T ss_pred Hhc-CChHHHHHHHHHHHHHHHHhhc-ccccc-ccccC-----CCCCCccccCcHH--HHHHHHHHHHHHCCHHHHHHHH
Confidence 455 8999999999999999877542 11111 11000 0011122222333 7777889999999999999999
Q ss_pred HHHHHHHHHhhhhhhccc--ccccccccccccc--chHHHHHHHHHhcCCHHHHHHHhhccccccchhhhhcCCCCCCCc
Q 005721 82 WMVEYFYNRVQNVIKKYS--IERHWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFH 157 (681)
Q Consensus 82 ~~ad~~~~~~~~~~~~~~--~~~~~~~l~~E~G--Gmne~L~~LY~~TGd~~yL~lA~~f~~~~~~~~l~~~~D~l~g~H 157 (681)
+..+++.+.+...-.... .+.......--+| ||..++.+||+.|+|++|++.|+...+..... . ...+
T Consensus 166 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~~~~~~----~----~~~~ 237 (321)
T cd04791 166 EALDKELARAVVDDGGLLQVDEGARLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADGIAHAALSS----C----YANP 237 (321)
T ss_pred HHHHHHHHhhccCCCCceEcCCCCccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhh----h----ccCc
Confidence 999999876532101000 0000000001233 78899999999999999999998764322100 0 0011
Q ss_pred ccCccccchH--HHHHHHHhCChHHHHHHHHHHHHhhcc
Q 005721 158 SNTHIPIVIG--SQMRYEVTGDQLHKTISMFFMDIVNSS 194 (681)
Q Consensus 158 anthiP~~~G--~a~~Y~~TGd~~y~~aa~~f~d~v~~~ 194 (681)
..-|...=++ ...+++.++|+.|++.+.+..+.+..+
T Consensus 238 ~lchG~~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (321)
T cd04791 238 GLFSGTAGLGAHLNDLAAEGDNALYKAAAERLALYLIAT 276 (321)
T ss_pred cccCCcHhHHHHHHhhcccccChHHHHHHHHHHHHhccc
Confidence 2234433222 344578999999999999988877643
No 12
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=97.38 E-value=0.0038 Score=67.64 Aligned_cols=220 Identities=16% Similarity=0.078 Sum_probs=121.1
Q ss_pred cccCCchHHHHHHHHHHHHHHHhhhhCCCceeeccCCchhhhhhccCCCcccccchHHHHHHHHHHHHHcCCHHHHHHHH
Q 005721 2 WASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTT 81 (681)
Q Consensus 2 ya~t~D~~L~~k~~~~V~~l~~~Q~~~~dGYl~~~~~~~~~~~~~~~~~W~pyy~~HkI~aGLld~y~~tG~~~aL~va~ 81 (681)
|..|+|+++++.+..+++.+...+. . ... ...|-+...++..|+.||+++.++++.
T Consensus 38 ~~~tgd~~~~~~a~~~~~~~~~~~~--~-----~~~-----------------~d~~~~g~~~~~~y~~t~d~~y~~~~~ 93 (336)
T PF07470_consen 38 YEYTGDERYLDYAERWADRFIEEDG--S-----DYN-----------------LDDHDIGFLLLDLYERTGDEKYKDAAI 93 (336)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHHH--T-----TTS-----------------CCGTTHHHHHHHHHHHH-THHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhccC--C-----ccC-----------------CchhhhHHHHHHHHHHhCCHHHHHHHH
Confidence 6679999999999999999888877 2 100 011223333467899999999999999
Q ss_pred HHHHHHHHHhhhhh-hcc---ccccccccccccccchH-HHHHHHHHhcCCHHHHHHHhhcc---ccccchhhhhcCCCC
Q 005721 82 WMVEYFYNRVQNVI-KKY---SIERHWQTLNEEAGGMN-DVLYKLFCITQDPKHLMLAHLFD---KPCFLGLLALQADDI 153 (681)
Q Consensus 82 ~~ad~~~~~~~~~~-~~~---~~~~~~~~l~~E~GGmn-e~L~~LY~~TGd~~yL~lA~~f~---~~~~~~~l~~~~D~l 153 (681)
+.++++.++..+.. ..+ .....|..+..- .|+ ..|+++++.|||++|++.|..-. ....+++.. -+
T Consensus 94 ~~a~~~l~~~~~~~~G~~~~~~~~~~~~wiD~~--~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~~~d~~t----Gl 167 (336)
T PF07470_consen 94 QAADWLLARRPRTSDGGFWHNRPYPNQVWIDGM--YMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKYLYDPET----GL 167 (336)
T ss_dssp HHHHHHHHTSCBECTGCBECTTTSTTEEETTHH--HHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHHHB-TTT----SS
T ss_pred HHHHHHHHhCCCCCCCccccCCCCCCceeeccc--cccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhccCCCC----Cc
Confidence 99998876543310 000 000111111111 145 68899999999999999886421 111222210 00
Q ss_pred CCCcccCccc---------------cchHHHHHHHHhCC-----hHHHHHHHHHHHHhhccceeeecCCCCCCCCCCCcc
Q 005721 154 SGFHSNTHIP---------------IVIGSQMRYEVTGD-----QLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKR 213 (681)
Q Consensus 154 ~g~HanthiP---------------~~~G~a~~Y~~TGd-----~~y~~aa~~f~d~v~~~h~y~tGG~s~~E~f~~p~~ 213 (681)
-.|..++.. .+.|.++.|+.+.+ +.+++.++.+.+.+.+..- ..|... -.+..|.
T Consensus 168 -~~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~-~~G~w~--~~~~~~~- 242 (336)
T PF07470_consen 168 -YYHGYTYQGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQD-EDGLWY--QDLDDPD- 242 (336)
T ss_dssp -BESEEETTSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTST-TTSBEB--SBTTTTT-
T ss_pred -eeeccCCCCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCC-CCCCcc--eecCCCC-
Confidence 113222211 13678888988744 5666777777766654322 222111 1111111
Q ss_pred cccCCCCCcccchhhHHHHHHH-HHH-hcccCCchhHHHHHHHHhhhcccc
Q 005721 214 LASNLDSNTEESCTTYNMLKVS-RHL-FRWTKEIAYADYYERSLTNGVLGI 262 (681)
Q Consensus 214 l~~~l~~~~~EtCas~nmlkl~-~~L-f~~tgd~~YaD~~EralyN~ila~ 262 (681)
+..+.||.+|.=+..-. +-+ ..+..+.+|.+..||++ ++++..
T Consensus 243 -----~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~-~~l~~~ 287 (336)
T PF07470_consen 243 -----PGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKAL-EALLSN 287 (336)
T ss_dssp -----TTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHH-HHHHHC
T ss_pred -----CCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH-HHHHhC
Confidence 23567777774222211 212 23344678999999986 777766
No 13
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=97.27 E-value=0.0068 Score=64.71 Aligned_cols=169 Identities=16% Similarity=0.037 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhhhhccccccccc--------cccccccchHHHHHHHHHhcCCHHHH
Q 005721 60 ILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQ--------TLNEEAGGMNDVLYKLFCITQDPKHL 131 (681)
Q Consensus 60 I~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~--------~l~~E~GGmne~L~~LY~~TGd~~yL 131 (681)
|+..|+..|+. ++++.++++.+.++++.+...+. +. ...|. ..++ ..|+..+|.+||+.|||++|+
T Consensus 88 ~~~~ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~~--~~--~~~~~~~~~~~~G~~hG-~aGi~~~L~~l~~~t~d~~~l 161 (321)
T cd04791 88 IGLALLYFART-GDPALLEAAAKIAELLAEALERG--DP--ALLWPDFDRVDHGLLHG-WAGIALFLLRLYKATGDSRYL 161 (321)
T ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhhcc--cc--ccccccCCCCCCccccC-cHHHHHHHHHHHHHHCCHHHH
Confidence 45556677888 99999999999999997654321 00 01121 1111 126889999999999999999
Q ss_pred HHHhhcccc----------ccchhhhhcCCCCCCCcccCccccc--hHHHHHHHHhCChHHHHHHHHHHHHhhccceeee
Q 005721 132 MLAHLFDKP----------CFLGLLALQADDISGFHSNTHIPIV--IGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYAT 199 (681)
Q Consensus 132 ~lA~~f~~~----------~~~~~l~~~~D~l~g~HanthiP~~--~G~a~~Y~~TGd~~y~~aa~~f~d~v~~~h~y~t 199 (681)
+.|+...+. .+++. .+.+. ...+-.|...- ......|++|+|++|++.++...+.+.+.-
T Consensus 162 ~~A~~~~~~~~~~~~~~~~g~~~~--~~~~~--~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~---- 233 (321)
T cd04791 162 ELAEEALDKELARAVVDDGGLLQV--DEGAR--LLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADGIAHAALSSC---- 233 (321)
T ss_pred HHHHHHHHHHHHhhccCCCCceEc--CCCCc--cCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh----
Confidence 999865321 11110 00000 00111223222 224567899999999999998888775321
Q ss_pred cCCCCCCCCCCCcccccCCCCCcccchhhHHHHHHHHHHhcccCCchhHHHHHHHHhhhcccc
Q 005721 200 GGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGI 262 (681)
Q Consensus 200 GG~s~~E~f~~p~~l~~~l~~~~~EtCas~nmlkl~~~Lf~~tgd~~YaD~~EralyN~ila~ 262 (681)
+. ..+=.|.+.+.+.+...+.+.++|.+|.+..++.. ..++..
T Consensus 234 --------~~-----------~~~lchG~~G~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 276 (321)
T cd04791 234 --------YA-----------NPGLFSGTAGLGAHLNDLAAEGDNALYKAAAERLA-LYLIAT 276 (321)
T ss_pred --------cc-----------CccccCCcHhHHHHHHhhcccccChHHHHHHHHHH-HHhccc
Confidence 11 12234556777778888999999999999999875 666654
No 14
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=96.87 E-value=0.0056 Score=66.53 Aligned_cols=243 Identities=15% Similarity=0.121 Sum_probs=127.7
Q ss_pred CCchHHHHHHHHHHHHHHHhhhh-CCCceeeccCCchhhhhhccCCCcccccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005721 5 THNESLKEKMSAVVSALSACQKE-IGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWM 83 (681)
Q Consensus 5 t~D~~L~~k~~~~V~~l~~~Q~~-~~dGYl~~~~~~~~~~~~~~~~~W~pyy~~HkI~aGLld~y~~tG~~~aL~va~~~ 83 (681)
.++++.++.++.-++.|.+.-.. ...||+......- .... =-.-|+.-.++.||- .+..+|+++++++|.++
T Consensus 36 ~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~--~~~~----~~~~Y~~af~l~ala-~~~~tg~~~~~~~A~~~ 108 (346)
T PF07221_consen 36 LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGG--PLDP----QKDLYDQAFALLALA-EARATGDPEALELAEQT 108 (346)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTE--EEE------EEHHHHHHHHHHHH-HHHCTT-TTHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCC--CCcc----ccchHHHHHHHHHHH-HHHHhCChhHHHHHHHH
Confidence 67999999999999999988742 1346655443210 0000 012345555777774 48899999999999999
Q ss_pred HHHHHHHhhhhhhcc---ccccccccc--cccccchHHHHHHHHHhcCCHHHHHHHhhccc---cccchhhh------hc
Q 005721 84 VEYFYNRVQNVIKKY---SIERHWQTL--NEEAGGMNDVLYKLFCITQDPKHLMLAHLFDK---PCFLGLLA------LQ 149 (681)
Q Consensus 84 ad~~~~~~~~~~~~~---~~~~~~~~l--~~E~GGmne~L~~LY~~TGd~~yL~lA~~f~~---~~~~~~l~------~~ 149 (681)
.+.+.+++.....+. ...+-|... ...+-=+.+++..||++|||++|++.|+.+.+ ..|+++.. ..
T Consensus 109 ~~~l~~~~~d~~~g~~~~~~~~~~~~~r~~n~~mhl~eA~l~l~~~~~~~~~~~~a~~l~~~~~~~f~~~~~g~~~E~f~ 188 (346)
T PF07221_consen 109 LEFLERRFWDPEGGGYRESFDPDWSPPRGQNPHMHLLEAFLALYEATGDPRYLDRAEELLDLFLDRFADPESGALPEFFD 188 (346)
T ss_dssp HHHHHHHTEETTTTEE--EETTTSSCBEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHCCTTEETSEEE
T ss_pred HHHHHHHhcccccCcceeccCCccccCCCCChhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhccCeeeeeec
Confidence 999988774321111 001111111 00000023688889999999999999876522 12222110 00
Q ss_pred CCCC--C-CCcccCccc--cchHHHH-------HHH---HhCChHHHHHHHHHHHHhhccceeeecC-CCCCCCCCCCcc
Q 005721 150 ADDI--S-GFHSNTHIP--IVIGSQM-------RYE---VTGDQLHKTISMFFMDIVNSSHTYATGG-TSVGEFWSDPKR 213 (681)
Q Consensus 150 ~D~l--~-g~HanthiP--~~~G~a~-------~Y~---~TGd~~y~~aa~~f~d~v~~~h~y~tGG-~s~~E~f~~p~~ 213 (681)
.|-. . +.+..+-.+ +-.||.. .+. ..+++.+++.++..++...++-.-..|| +-. . .+
T Consensus 189 ~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~~~~~~~~a~~l~~~~~~~G~d~~~gG~~~-~--~d--- 262 (346)
T PF07221_consen 189 RDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRGDPDWLERARRLFDFALEHGWDREGGGLFY-S--VD--- 262 (346)
T ss_dssp TTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT-HTHHHHHHHHHHHHHHHHBSTTTSSB-S-E--EE---
T ss_pred cccccccccccccccccCccCCchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHheEecCCCeEEE-E--Ee---
Confidence 1100 0 000000001 2245432 233 5577888888888777766432222233 211 0 00
Q ss_pred cccCCCCCcccchhhHHHHHHHHHHhcccCCchhHHHHHHHH---hhhcc
Q 005721 214 LASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSL---TNGVL 260 (681)
Q Consensus 214 l~~~l~~~~~EtCas~nmlkl~~~Lf~~tgd~~YaD~~Eral---yN~il 260 (681)
..+......--.=...+.|+-+-.+++.|+|.+|.+.++++. ++++.
T Consensus 263 ~~g~~~~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~~~~~~~~~~~~~~~ 312 (346)
T PF07221_consen 263 RDGKPPDRSKRWWPQAEALKALLAAYELTGDEKYLDWARRVWDYIFRHFI 312 (346)
T ss_dssp TTS-BSST-EEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTB
T ss_pred CCCCccccCccccHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhCC
Confidence 001111111112223566677777888999999999988876 55554
No 15
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=96.70 E-value=0.017 Score=66.31 Aligned_cols=79 Identities=19% Similarity=0.226 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhh--hhhc--c------ccccccc---cccccccchHHHHHHHHHhcC
Q 005721 60 ILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQN--VIKK--Y------SIERHWQ---TLNEEAGGMNDVLYKLFCITQ 126 (681)
Q Consensus 60 I~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~--~~~~--~------~~~~~~~---~l~~E~GGmne~L~~LY~~TG 126 (681)
++.|||.+|.++|++..|+.|+.++|-+..-|.. -++- . .....|. ..-.|.|.+..-+..|.++||
T Consensus 160 ~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~~LS~lTG 239 (522)
T PTZ00470 160 VLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATGRKSYPGWAGGCSILSEVGTLQLEFNYLSEITG 239 (522)
T ss_pred hHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccCCCCCcccCCCccchhhhhhHHHHHHHHHHhhC
Confidence 6799999999999999999999999999876632 1110 0 0111121 122377778888899999999
Q ss_pred CHHHHHHHhhcc
Q 005721 127 DPKHLMLAHLFD 138 (681)
Q Consensus 127 d~~yL~lA~~f~ 138 (681)
|++|.+.|++..
T Consensus 240 d~kY~~~a~~i~ 251 (522)
T PTZ00470 240 DPKYAEYVDKVM 251 (522)
T ss_pred CHHHHHHHHHHH
Confidence 999999998764
No 16
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=96.53 E-value=0.096 Score=55.77 Aligned_cols=213 Identities=15% Similarity=0.102 Sum_probs=127.4
Q ss_pred cccCCchHHHHHHHHHHHHHHHhhhh----CCCceeeccCCchhhhhhccCCCcccccchHHHHHHHHHHHHHcCCHHHH
Q 005721 2 WASTHNESLKEKMSAVVSALSACQKE----IGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEAL 77 (681)
Q Consensus 2 ya~t~D~~L~~k~~~~V~~l~~~Q~~----~~dGYl~~~~~~~~~~~~~~~~~W~pyy~~HkI~aGLld~y~~tG~~~aL 77 (681)
|..++|+++++.+.+++..+.+.-.. ...+++... ++ ++..|+..|..++++..+
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~G~-------------------aG--~~~~ll~~~~~~~~~~~~ 121 (343)
T cd04434 63 SKGLGDQELLKELLELLLLLVELILEDLKDLNYDLLSGL-------------------AG--LLLALLLLYKTFGEEIFL 121 (343)
T ss_pred HHHcCCHHHHHHHHHHHHHhhhhhhcccCCCCcceeech-------------------HH--HHHHHHHHHHhcCCcCHH
Confidence 44578999999999988888765320 011222221 11 556667788888999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccccccccc-------c-cccccc--chHHHHHHHHHhcCCHHHHHHHhhccc--------
Q 005721 78 RMTTWMVEYFYNRVQNVIKKYSIERHWQ-------T-LNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDK-------- 139 (681)
Q Consensus 78 ~va~~~ad~~~~~~~~~~~~~~~~~~~~-------~-l~~E~G--Gmne~L~~LY~~TGd~~yL~lA~~f~~-------- 139 (681)
+.+.+.++++.+...+.... ..|. . ..--+| |+..+|..+|+.+.++.+.++++....
T Consensus 122 ~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~g~~HG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (343)
T cd04434 122 ELIRKILDYLLELGKNGDGK----IRWPMYFPEGRVNLGLAHGLAGILLALLLLYKKTVDKSLEALIKALLKYERRLQDD 197 (343)
T ss_pred HHHHHHHHHHHHhhhhccCC----CceeeeccCCccccchhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHccCC
Confidence 99999999998754332111 1110 0 111233 678999999999988888877765421
Q ss_pred c-ccchhhhhcCCCCCCCcccCcccc--chHHHHHHHHhCChHHHHHHHHHHHHhhccceeeecCCCCCCCCCCCccccc
Q 005721 140 P-CFLGLLALQADDISGFHSNTHIPI--VIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLAS 216 (681)
Q Consensus 140 ~-~~~~~l~~~~D~l~g~HanthiP~--~~G~a~~Y~~TGd~~y~~aa~~f~d~v~~~h~y~tGG~s~~E~f~~p~~l~~ 216 (681)
+ ...++.. ..+.......--|... .......|+.++|+.+++.++...+.+.++... +
T Consensus 198 ~~~~~~~~~-~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---------- 258 (343)
T cd04434 198 SGGFWWPSR-SNGGNRFLVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWKRGLL--------E---------- 258 (343)
T ss_pred CCCCCCCCC-CCCCccccceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhc--------c----------
Confidence 1 1111100 0000000111123332 233556799999999998888777766542211 0
Q ss_pred CCCCCcccchhhHHHHHHHHHHhcccCCchhHHHHHHHHhhhccc
Q 005721 217 NLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLG 261 (681)
Q Consensus 217 ~l~~~~~EtCas~nmlkl~~~Lf~~tgd~~YaD~~EralyN~ila 261 (681)
....+=.|...+.+.+..+|.+.+++.+|.+..++.. +.++.
T Consensus 259 --~~~~~lChG~~G~~~~ll~l~~~~~~~~~~~~a~~~~-~~~~~ 300 (343)
T cd04434 259 --LKNPGLCHGIAGNLLILLLLYKLTGDLKFLARALALA-LLLIS 300 (343)
T ss_pred --CCCCCcCcCccchHHHHHHHHHHhCCHHHHHHHHHHH-HHHHH
Confidence 0123334556777888888999999999998886665 45554
No 17
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.048 Score=63.53 Aligned_cols=124 Identities=16% Similarity=0.060 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhhhhccccccccccccccc---c------chHHHHHHHHHhcCCHHH
Q 005721 60 ILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEA---G------GMNDVLYKLFCITQDPKH 130 (681)
Q Consensus 60 I~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~---G------Gmne~L~~LY~~TGd~~y 130 (681)
+.++|..+++++|+++.+++|++.++++.+.+..- ++. +-+ ++++. | =+..+|..||++|+|.+|
T Consensus 416 mi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~--rl~--~~~--~~G~a~~~g~leDYA~~i~gll~lye~t~d~~y 489 (667)
T COG1331 416 MIAALAEAGRVLGDPEYLEAAERAADFILDNLYVD--RLL--RRY--RGGEAAVAGLLEDYAFLILGLLALYEATGDLAY 489 (667)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccc--chh--eee--ecCcccccccchhHHHHHHHHHHHHHhhCcHHH
Confidence 55788899999999999999999999998765331 111 111 11111 1 134789999999999999
Q ss_pred HHHHhhcccc---ccchhhhhc--------CCCC--CCCcccCccccc-----hHHHHHHHHhCChHHHHHHHHHHHH
Q 005721 131 LMLAHLFDKP---CFLGLLALQ--------ADDI--SGFHSNTHIPIV-----IGSQMRYEVTGDQLHKTISMFFMDI 190 (681)
Q Consensus 131 L~lA~~f~~~---~~~~~l~~~--------~D~l--~g~HanthiP~~-----~G~a~~Y~~TGd~~y~~aa~~f~d~ 190 (681)
|+.|..+.+. .|.++. .+ .+-+ ...-...-+|.. ....++-.+|||.+|.+.|......
T Consensus 490 L~~A~~L~~~~i~~f~d~~-gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~e~A~~~L~a 566 (667)
T COG1331 490 LEKAIELADEAIADFWDDE-GGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDARYLEAAEDILQA 566 (667)
T ss_pred HHHHHHHHHHHHHHhcCCC-CCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhHHHHHHHHHHH
Confidence 9999887543 222222 11 0000 000112233322 3345567999999999887755443
No 18
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=96.35 E-value=0.093 Score=63.84 Aligned_cols=208 Identities=12% Similarity=0.021 Sum_probs=122.9
Q ss_pred cccCCchHHHHHHHHHHHHHHHhhhh-CCCceeeccCCchhhhhhccCCCcccccchHHHHHHHHHHHHHcCCHHHHHHH
Q 005721 2 WASTHNESLKEKMSAVVSALSACQKE-IGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMT 80 (681)
Q Consensus 2 ya~t~D~~L~~k~~~~V~~l~~~Q~~-~~dGYl~~~~~~~~~~~~~~~~~W~pyy~~HkI~aGLld~y~~tG~~~aL~va 80 (681)
|..++|+.+++.+.++++.+.+...+ ...++++.. ++ +...|+..|+.+++++.++++
T Consensus 554 ~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~D~~~G~-------------------aG--ii~~Ll~l~~~~~~~~~l~~a 612 (825)
T cd04792 554 GKLLKDDRLLNLAKEILDLIDELIEKDEKLDFISGA-------------------AG--LILVLLSLYELFLSERFLDLA 612 (825)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhhccccCCCEeeec-------------------HH--HHHHHHHHHhccCChHHHHHH
Confidence 45588999999999999988765431 012333222 11 445667789999999999999
Q ss_pred HHHHHHHHHHhhhhhhcc-cccccccccccccc--chHHHHHHHHHhcCCHHHHHHHhhccc---c-----ccchhhhhc
Q 005721 81 TWMVEYFYNRVQNVIKKY-SIERHWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDK---P-----CFLGLLALQ 149 (681)
Q Consensus 81 ~~~ad~~~~~~~~~~~~~-~~~~~~~~l~~E~G--Gmne~L~~LY~~TGd~~yL~lA~~f~~---~-----~~~~~l~~~ 149 (681)
.+.++++.+...+.-... ..+.. ....-.+| |+..+|.+||+.|+|++|++.|+...+ . ...|+. .
T Consensus 613 ~~~~~~l~~~~~~~~~~~~~~~~~-~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~~~~~~~w~~-~- 689 (825)
T cd04792 613 LKCGDHLLENASNEDGGIGPAEQP-NLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLFSEEGWNWPR-K- 689 (825)
T ss_pred HHHHHHHHHhhhhccCCccccccc-ccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHhhcCCCC-c-
Confidence 999999875432210000 00000 00111233 788999999999999999999876532 1 111110 0
Q ss_pred CCCCCCCcccCcccc--chHHHHHHHH--hCChHHHHHHHHHHHHhhccceeeecCCCCCCCCCCCcccccCCCCCcccc
Q 005721 150 ADDISGFHSNTHIPI--VIGSQMRYEV--TGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEES 225 (681)
Q Consensus 150 ~D~l~g~HanthiP~--~~G~a~~Y~~--TGd~~y~~aa~~f~d~v~~~h~y~tGG~s~~E~f~~p~~l~~~l~~~~~Et 225 (681)
.+.. ..-+--|... .......++. .+|+.+.+.+....+.+.++ . +. ...+=.
T Consensus 690 ~~~~-~~~~WChG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~-~-----------~~----------~~~slC 746 (825)
T cd04792 690 DGNS-FSAAWCHGAPGILLARLELLKFNDLDDEELKEEIEIALKTTLKE-G-----------FG----------NNHSLC 746 (825)
T ss_pred CcCC-CCCcccCCcHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHh-c-----------CC----------CCCeec
Confidence 0000 0011223332 2334455777 68888887777666655321 1 10 112234
Q ss_pred hhhHHHHHHHHHHhcccCCchhHHHHHHHHh
Q 005721 226 CTTYNMLKVSRHLFRWTKEIAYADYYERSLT 256 (681)
Q Consensus 226 Cas~nmlkl~~~Lf~~tgd~~YaD~~Eraly 256 (681)
|...+.+.+...+.+.++|.+|.+.+++.+-
T Consensus 747 HG~~Gil~~ll~~~~~~~~~~~~~~a~~~~~ 777 (825)
T cd04792 747 HGDLGNLEILLYAAKAFGDEKLQELANSLAI 777 (825)
T ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5556777777888889999999888887653
No 19
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=96.26 E-value=0.041 Score=59.80 Aligned_cols=175 Identities=20% Similarity=0.249 Sum_probs=98.0
Q ss_pred ccCCchHHHHHHHHHHHHHHHhhhh-CCCceeeccCCchhhhhhccCCCcccc--cc--hHHHHHHHHHHHHHcCCHHHH
Q 005721 3 ASTHNESLKEKMSAVVSALSACQKE-IGSGYLSAFPTEQFDRLEALIPVWAPY--YT--IHKILAGLLDQYTYADNAEAL 77 (681)
Q Consensus 3 a~t~D~~L~~k~~~~V~~l~~~Q~~-~~dGYl~~~~~~~~~~~~~~~~~W~py--y~--~HkI~aGLld~y~~tG~~~aL 77 (681)
..|+|++.++.++++++.|.+.-.. ...||...++. .|.+. .+ +|.+. ++++.|+.+|+++.+
T Consensus 94 ~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~-----------~~~~~r~~n~~mhl~e-A~l~l~~~~~~~~~~ 161 (346)
T PF07221_consen 94 RATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDP-----------DWSPPRGQNPHMHLLE-AFLALYEATGDPRYL 161 (346)
T ss_dssp HCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETT-----------TSSCBEEHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCC-----------ccccCCCCChhHHHHH-HHHHHHHhccCHHHH
Confidence 4689999999999999999877531 12355544322 22222 23 45555 446899999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccc---ccccccccc------------ccccchHH---HHHHHH--HhcCCHHHHHHHhhc
Q 005721 78 RMTTWMVEYFYNRVQNVIKKYS---IERHWQTLN------------EEAGGMND---VLYKLF--CITQDPKHLMLAHLF 137 (681)
Q Consensus 78 ~va~~~ad~~~~~~~~~~~~~~---~~~~~~~l~------------~E~GGmne---~L~~LY--~~TGd~~yL~lA~~f 137 (681)
+.+.++++.+..++-..-.... ....|.++. .+.|=+-| -|.++. ...+++++++.|..+
T Consensus 162 ~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~~~~~~~~a~~l 241 (346)
T PF07221_consen 162 DRAEELLDLFLDRFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRGDPDWLERARRL 241 (346)
T ss_dssp HHHHHHHHHHHTTCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT-HTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 9999999999866542111100 112244321 12231123 334444 345888999888664
Q ss_pred cccccchhhhhcCCCCCC-C----cccCcccc-----------chHHHHHHHHhCChHHHHHHHHHHHHhhc
Q 005721 138 DKPCFLGLLALQADDISG-F----HSNTHIPI-----------VIGSQMRYEVTGDQLHKTISMFFMDIVNS 193 (681)
Q Consensus 138 ~~~~~~~~l~~~~D~l~g-~----HanthiP~-----------~~G~a~~Y~~TGd~~y~~aa~~f~d~v~~ 193 (681)
.... +..+-|.-.| + ..+.+.+. +.+++..|+.|||+.|++.++..|+.+.+
T Consensus 242 ~~~~----~~~G~d~~~gG~~~~~d~~g~~~~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~~~~~~~~~~~~ 309 (346)
T PF07221_consen 242 FDFA----LEHGWDREGGGLFYSVDRDGKPPDRSKRWWPQAEALKALLAAYELTGDEKYLDWARRVWDYIFR 309 (346)
T ss_dssp HHHH----HHHHBSTTTSSB-SEEETTS-BSST-EEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHH----HHheEecCCCeEEEEEeCCCCccccCccccHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 2211 1111111111 0 11222221 36788899999999999999999998864
No 20
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=95.82 E-value=0.046 Score=62.05 Aligned_cols=193 Identities=18% Similarity=0.146 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhhh--hhhc--ccc-----ccccc--cccccccchHHHHHHHHHhcC
Q 005721 60 ILAGLLDQYTYA--DNAEALRMTTWMVEYFYNRVQN--VIKK--YSI-----ERHWQ--TLNEEAGGMNDVLYKLFCITQ 126 (681)
Q Consensus 60 I~aGLld~y~~t--G~~~aL~va~~~ad~~~~~~~~--~~~~--~~~-----~~~~~--~l~~E~GGmne~L~~LY~~TG 126 (681)
++.|||.+|.++ +++..|+.|+.+||.+..-|.. .++- ... .++.. ..-.|.|.+..-+.+|.++||
T Consensus 82 ~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~lTg 161 (452)
T PF01532_consen 82 VLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFDTPTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQLTG 161 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHHHS
T ss_pred hhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhccCCCccccceeeecccCCCCCCCCcccccccccceechhHHHHHhh
Confidence 789999999999 9999999999999998765532 1111 111 01111 111467778888999999999
Q ss_pred CHHHHHHHhhccccc--------cchhhhhcCCCCCCCcccCccccc-------hHHHHHHHHhC--ChHHHHHHHHHHH
Q 005721 127 DPKHLMLAHLFDKPC--------FLGLLALQADDISGFHSNTHIPIV-------IGSQMRYEVTG--DQLHKTISMFFMD 189 (681)
Q Consensus 127 d~~yL~lA~~f~~~~--------~~~~l~~~~D~l~g~HanthiP~~-------~G~a~~Y~~TG--d~~y~~aa~~f~d 189 (681)
|++|.+.|++..+.- +.+.....-|...+.-...++-+- .=..+.|.++| |+.|++.=....+
T Consensus 162 d~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLlK~~lL~g~~d~~~~~~~~~a~~ 241 (452)
T PF01532_consen 162 DPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLLKMYLLLGGTDEQYRDMYDEAVD 241 (452)
T ss_dssp -THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHHHHHHHTTTTTHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccccccccCCCcchHHHhhhhhhhhcCccchHHHHHHHHHHH
Confidence 999999998763210 111000001111111111111110 11566788999 8999888888888
Q ss_pred HhhccceeeecCCCCCC--CCCCCcc--ccc-CCCCCcccchhhHHHHHHHHHHhcccCCchhHHHHHHHHh
Q 005721 190 IVNSSHTYATGGTSVGE--FWSDPKR--LAS-NLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLT 256 (681)
Q Consensus 190 ~v~~~h~y~tGG~s~~E--~f~~p~~--l~~-~l~~~~~EtCas~nmlkl~~~Lf~~tgd~~YaD~~Eraly 256 (681)
.|.+ |+......-..+ .|-.... ... ..+....=+|-.-+|+.+..+++.- .++.+..++.+.
T Consensus 242 ~i~~-~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~~~~---~~~~~~A~~l~~ 309 (452)
T PF01532_consen 242 AIKK-HLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKLFND---EGDLELAEELTE 309 (452)
T ss_dssp HHHH-HTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHTTTC---HHHHHHHHHHHH
T ss_pred HHHH-HhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhcccCc---hhHHHHHHHHHH
Confidence 8764 544332221101 1111100 000 1134567799999999999999843 555555555443
No 21
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=95.67 E-value=0.028 Score=60.35 Aligned_cols=115 Identities=18% Similarity=0.053 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhhhhccccccccccccccccchHHHHHHHHHhcCCHHHHHHHhhccc
Q 005721 60 ILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDK 139 (681)
Q Consensus 60 I~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~~yL~lA~~f~~ 139 (681)
.+.|+..+|++||+++.|+.++..+|....+=+ ++...+.. .. +-..|.-||+.|||++||++|....+
T Consensus 41 ~lyGv~~~~eAT~d~~yl~~l~~~~d~~i~~~g--~~~~~id~-------i~--~g~~L~~L~e~T~~~~Yl~~a~~~a~ 109 (357)
T COG4225 41 FLYGVARAYEATGDAEYLDYLKTWFDEQIDEGG--LPPRNIDH-------IA--AGLTLLPLYEQTGDPRYLEAAIKLAS 109 (357)
T ss_pred hHHHHHHHHHHcCcHHHHHHHHHHHHhhhccCC--CCccchhh-------hc--cCceeeehhhhhCCHHHHHHHHHHHH
Confidence 567888999999999999999888887654211 11111111 10 11468889999999999999876532
Q ss_pred cccchhhhhcCCCCCCCcccCcccc----------chH---HHHHHHHhCChHHH-HHHHHHHHHhh
Q 005721 140 PCFLGLLALQADDISGFHSNTHIPI----------VIG---SQMRYEVTGDQLHK-TISMFFMDIVN 192 (681)
Q Consensus 140 ~~~~~~l~~~~D~l~g~HanthiP~----------~~G---~a~~Y~~TGd~~y~-~aa~~f~d~v~ 192 (681)
.-.-.+ . .-.|- ..|+.+ .+| .++.-.++|+++|. ++.+.|+..+.
T Consensus 110 ~l~~~~---R--t~eG~--f~H~~~~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~ 169 (357)
T COG4225 110 WLVHEP---R--TKEGG--FQHKVKYPHQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHEK 169 (357)
T ss_pred HHhhCc---c--cCCCc--cccccCchhHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 111010 0 00111 122222 244 46667999999998 57888988864
No 22
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=95.51 E-value=0.055 Score=58.63 Aligned_cols=136 Identities=17% Similarity=0.066 Sum_probs=76.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHhhccccccchhhhhcCCCCCCCcccCccccchHHHHHHHHhCChHHHHHHHHHHH-Hhh
Q 005721 114 MNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMD-IVN 192 (681)
Q Consensus 114 mne~L~~LY~~TGd~~yL~lA~~f~~~~~~~~l~~~~D~l~g~HanthiP~~~G~a~~Y~~TGd~~y~~aa~~f~d-~v~ 192 (681)
+-..|.++|+.|||++|++.|+.+.+..+.. ... ..+.+.|. +.......|+.|||++|++++....+ .+.
T Consensus 30 ~~~gl~~~~~~tgd~~~~~~a~~~~~~~~~~-~~~------~~~~d~~~-~g~~~~~~y~~t~d~~y~~~~~~~a~~~l~ 101 (336)
T PF07470_consen 30 FWYGLLEAYEYTGDERYLDYAERWADRFIEE-DGS------DYNLDDHD-IGFLLLDLYERTGDEKYKDAAIQAADWLLA 101 (336)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHT------TTSCCGTT-HHHHHHHHHHHH-THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhc-cCC------ccCCchhh-hHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4467889999999999999998764322211 100 11223332 33335678999999999999999999 554
Q ss_pred ccceeeecCCCCCCCCCCCcccccCCCCCcccchhhH--HHHHHHHHHhcccCCchhHHHHHHHHhhhcccccCCCCCCe
Q 005721 193 SSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTY--NMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGV 270 (681)
Q Consensus 193 ~~h~y~tGG~s~~E~f~~p~~l~~~l~~~~~EtCas~--nmlkl~~~Lf~~tgd~~YaD~~EralyN~ila~q~~~~~g~ 270 (681)
+..--..||+...+. ....--|-+. +.- +.-++...|||++|.|.+.+-+-...--..++ +.|.
T Consensus 102 ~~~~~~~G~~~~~~~------------~~~~~wiD~~~M~~p-~l~~~~~~tgd~~~~~~a~~q~~~~~~~~~d~-~tGl 167 (336)
T PF07470_consen 102 RRPRTSDGGFWHNRP------------YPNQVWIDGMYMNLP-FLAWAGKLTGDPKYLDEAVRQFRLTRKYLYDP-ETGL 167 (336)
T ss_dssp TSCBECTGCBECTTT------------STTEEETTHHHHHHH-HHHHHHHHHTGHHHHHHHHHHHHHHHHHHB-T-TTSS
T ss_pred hCCCCCCCccccCCC------------CCCceeeccccccHH-HHHHHHHHHCCcHHHHHHHHHHHHHHHhccCC-CCCc
Confidence 333334565543111 0011112222 333 33346889999999998877654443333444 4454
Q ss_pred E
Q 005721 271 M 271 (681)
Q Consensus 271 ~ 271 (681)
+
T Consensus 168 ~ 168 (336)
T PF07470_consen 168 Y 168 (336)
T ss_dssp B
T ss_pred e
Confidence 3
No 23
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.32 E-value=0.084 Score=59.27 Aligned_cols=175 Identities=17% Similarity=0.116 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhh-------hhhccccccccccccc--cc---cchHHHHHHHHHh
Q 005721 57 IHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQN-------VIKKYSIERHWQTLNE--EA---GGMNDVLYKLFCI 124 (681)
Q Consensus 57 ~HkI~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~-------~~~~~~~~~~~~~l~~--E~---GGmne~L~~LY~~ 124 (681)
+|-|.+... .+...|++.+.+.+....+-+.+ ++. ..+....+..|..+.. |. |=+.++++..|+.
T Consensus 69 gkwlea~A~-~l~~~~dp~Lekr~D~vi~~~a~-~QdedGYl~~~~q~~~pe~Rw~nlr~~HelY~aghLieg~va~~qa 146 (589)
T COG3533 69 GKWLEAAAY-SLANKGDPELEKRIDEVVEELAR-AQDEDGYLGGWFQADFPEERWGNLRPNHELYCAGHLIEGGVAAHQA 146 (589)
T ss_pred HHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHH-hhccCCcccceeeccCchhhhhccccchHHHHhHHHHhhhhHHHHh
Confidence 455665542 44556777766666555555432 221 1111111222332211 10 1134789999999
Q ss_pred cCCHHHHHHHhhcccc--ccchhhhhcCCCCCCCcccCccccchHHHHHHHHhCChHHHHHHHHHHHHhhccceeeecCC
Q 005721 125 TQDPKHLMLAHLFDKP--CFLGLLALQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGT 202 (681)
Q Consensus 125 TGd~~yL~lA~~f~~~--~~~~~l~~~~D~l~g~HanthiP~~~G~a~~Y~~TGd~~y~~aa~~f~d~v~~~h~y~tGG~ 202 (681)
||+.+.|+.+.+|.+. ..++++.. ...+. -.|--+-...+++|++|||++|++.|++|.+.-.. .-++-||-
T Consensus 147 TGkr~lldV~~rlADhi~tvfgp~~~---q~~g~--~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~~rg~-~P~~~rg~ 220 (589)
T COG3533 147 TGKRRLLDVVCRLADHIATVFGPEED---QVPGY--CGHPEIELALAELYRLTGDQRYLDLARRFIHQRGV-EPLAQRGD 220 (589)
T ss_pred hCcchHHHHHHHHHHhhhhhcCcccc---ccccc--cCCCchhHHHHHHHHHhcChHHHHHHHHHHHHhcc-ChhhcCch
Confidence 9999999999988532 34444321 11110 01222334578899999999999999999876321 11222211
Q ss_pred CCCCCCCCCcccccCCCCCcccchhhHHHHHH---HHHHhcccCCchhHHHHHHHHhhh
Q 005721 203 SVGEFWSDPKRLASNLDSNTEESCTTYNMLKV---SRHLFRWTKEIAYADYYERSLTNG 258 (681)
Q Consensus 203 s~~E~f~~p~~l~~~l~~~~~EtCas~nmlkl---~~~Lf~~tgd~~YaD~~EralyN~ 258 (681)
| .|.=-++-.|.+ .-.|+..+||..+.-.+|+..=|-
T Consensus 221 ---e----------------~~~gHAvr~iyl~~G~A~l~~~~gDds~r~~~~~lW~~~ 260 (589)
T COG3533 221 ---E----------------LEGGHAVRQIYLYIGAADLAEETGDDSLRQAAEFLWQNV 260 (589)
T ss_pred ---h----------------hhhhhHHHHHHHhhhHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 1 111111222222 345899999999999998877554
No 24
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=95.19 E-value=0.5 Score=57.56 Aligned_cols=213 Identities=16% Similarity=0.180 Sum_probs=119.9
Q ss_pred cccCCchHHHHHHHHHHHHHHHhhhhC-----CCceeeccCCchhhhhhccCCCcccccchHHHHHHHHHHHHHcCCHHH
Q 005721 2 WASTHNESLKEKMSAVVSALSACQKEI-----GSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEA 76 (681)
Q Consensus 2 ya~t~D~~L~~k~~~~V~~l~~~Q~~~-----~dGYl~~~~~~~~~~~~~~~~~W~pyy~~HkI~aGLld~y~~tG~~~a 76 (681)
|..|+|+.+++.+.++++.+.+.-+.. +.|.+.... -|...|+..|..+++++.
T Consensus 504 ~~~t~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~gl~~G~a---------------------Gi~~~L~~l~~~~~~~~~ 562 (825)
T cd04792 504 GQLTGDERYTRLARKILDSLVKSLSELKTDDTGIGAFSGLG---------------------GILYALTHLGKLLKDDRL 562 (825)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHhcccccccCceeEechh---------------------HHHHHHHHHHHHcCCHHH
Confidence 567899999999888888877653311 112222210 134445567788999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccccccccccccccchHHHHHHHHHhcCCHHHHHHHhhccccccchhhhhcCCCCCCC
Q 005721 77 LRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGF 156 (681)
Q Consensus 77 L~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~~yL~lA~~f~~~~~~~~l~~~~D~l~g~ 156 (681)
++.+.+.++.+.+.... ......+++. .|+..+|..||+.|++++++++|....+.-+ ... ...+.....
T Consensus 563 ~~~a~~~~~~l~~~~~~-------~~~~D~~~G~-aGii~~Ll~l~~~~~~~~~l~~a~~~~~~l~-~~~-~~~~~~~~~ 632 (825)
T cd04792 563 LNLAKEILDLIDELIEK-------DEKLDFISGA-AGLILVLLSLYELFLSERFLDLALKCGDHLL-ENA-SNEDGGIGP 632 (825)
T ss_pred HHHHHHHHHHHHHhhcc-------ccCCCEeeec-HHHHHHHHHHHhccCChHHHHHHHHHHHHHH-Hhh-hhccCCccc
Confidence 99998888877543211 0111122222 3577899999999999999999876533211 000 001100000
Q ss_pred ------cccCccc--cchHHHHHHHHhCChHHHHHHHHHHHHhhccceeeecCCCCCCCCCCCcccccCCCCCcccchhh
Q 005721 157 ------HSNTHIP--IVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTT 228 (681)
Q Consensus 157 ------HanthiP--~~~G~a~~Y~~TGd~~y~~aa~~f~d~v~~~h~y~tGG~s~~E~f~~p~~l~~~l~~~~~EtCas 228 (681)
-.-.|.. ++.-.+..|+.|+|+.|+++++..++.... + +..++ ..|.... ......--|..
T Consensus 633 ~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~-~-~~~~~----~~w~~~~-----~~~~~~~WChG 701 (825)
T cd04792 633 AEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERR-L-FSEEG----WNWPRKD-----GNSFSAAWCHG 701 (825)
T ss_pred ccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-h-cCHhh----cCCCCcC-----cCCCCCcccCC
Confidence 0112222 122256679999999999999988876432 2 21111 1122100 01112334554
Q ss_pred -HHHHHHHHHHhcc--cCCchhHHHHHHHHh
Q 005721 229 -YNMLKVSRHLFRW--TKEIAYADYYERSLT 256 (681)
Q Consensus 229 -~nmlkl~~~Lf~~--tgd~~YaD~~Eraly 256 (681)
.+.+.....+.+. ..|..+.+.+++++-
T Consensus 702 ~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~ 732 (825)
T cd04792 702 APGILLARLELLKFNDLDDEELKEEIEIALK 732 (825)
T ss_pred cHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 4555444456666 578888888888763
No 25
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=95.06 E-value=0.29 Score=52.08 Aligned_cols=180 Identities=13% Similarity=-0.041 Sum_probs=101.9
Q ss_pred cccCCchHHHHHHHHHHHHHHHhhhhCCCceeeccCCchhhhhhccCCCcccccchHHHHHHHHHHHHHcCCHHHHHHHH
Q 005721 2 WASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTT 81 (681)
Q Consensus 2 ya~t~D~~L~~k~~~~V~~l~~~Q~~~~dGYl~~~~~~~~~~~~~~~~~W~pyy~~HkI~aGLld~y~~tG~~~aL~va~ 81 (681)
|..++|+...+.+..+++.|.+.+....+++.-..... . ......|+-=..+ |+..|+..+..+.+++..+++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~---~~~~~g~~HG~~G--i~~~l~~~~~~~~~~~~~~~~~ 185 (343)
T cd04434 112 YKTFGEEIFLELIRKILDYLLELGKNGDGKIRWPMYFP-E---GRVNLGLAHGLAG--ILLALLLLYKKTVDKSLEALIK 185 (343)
T ss_pred HHhcCCcCHHHHHHHHHHHHHHhhhhccCCCceeeecc-C---CccccchhhhhHH--HHHHHHHHHHhcCChhHHHHHH
Confidence 34567889999999999999998874343332110000 0 0001122222222 6666777888888888887777
Q ss_pred HHHHHHHHHhhhhhhccc----ccccccccccccc--chHHHHHHHHHhcCCHHHHHHHhhccccccchhhhhcCCCCCC
Q 005721 82 WMVEYFYNRVQNVIKKYS----IERHWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISG 155 (681)
Q Consensus 82 ~~ad~~~~~~~~~~~~~~----~~~~~~~l~~E~G--Gmne~L~~LY~~TGd~~yL~lA~~f~~~~~~~~l~~~~D~l~g 155 (681)
....+..+.+...-..+. ....-....=-+| |+..++.++|+.|+|+++++.++...+..+..... + ..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~ 260 (343)
T cd04434 186 ALLKYERRLQDDSGGFWWPSRSNGGNRFLVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWKRGLL---E--LK 260 (343)
T ss_pred HHHHHHHHccCCCCCCCCCCCCCCCccccceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhc---c--CC
Confidence 777766543221000000 0000000000234 78899999999999999999987653221111000 0 11
Q ss_pred CcccCcccc--chHHHHHHHHhCChHHHHHHHHHHHHhh
Q 005721 156 FHSNTHIPI--VIGSQMRYEVTGDQLHKTISMFFMDIVN 192 (681)
Q Consensus 156 ~HanthiP~--~~G~a~~Y~~TGd~~y~~aa~~f~d~v~ 192 (681)
.+..-|... .......|+.|+|+.+++.+..+...+.
T Consensus 261 ~~~lChG~~G~~~~ll~l~~~~~~~~~~~~a~~~~~~~~ 299 (343)
T cd04434 261 NPGLCHGIAGNLLILLLLYKLTGDLKFLARALALALLLI 299 (343)
T ss_pred CCCcCcCccchHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 122334442 3446777999999999998887776654
No 26
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=95.04 E-value=0.51 Score=51.32 Aligned_cols=218 Identities=11% Similarity=-0.049 Sum_probs=114.4
Q ss_pred cccCCchHHHHHHHHHHHHHHHh-hhhCCCceeeccCCchhhhhhccCCCcccccchHHHHHHHHHHHHHcCC-HHHHHH
Q 005721 2 WASTHNESLKEKMSAVVSALSAC-QKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADN-AEALRM 79 (681)
Q Consensus 2 ya~t~D~~L~~k~~~~V~~l~~~-Q~~~~dGYl~~~~~~~~~~~~~~~~~W~pyy~~HkI~aGLld~y~~tG~-~~aL~v 79 (681)
|..++|+++.+.+.+.++.+.+. ..+..++. . ...+-.=-++..|+..|+.+++ +.+++.
T Consensus 65 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--------~----------d~l~G~aG~l~~Ll~l~~~~~~~~~~~~~ 126 (343)
T cd04794 65 YHYLKDEDEVDEFLSKFLQLLESVVSPDSGLP--------D----------ELLYGRAGYLYALLFLNKKFGFKKIPSSL 126 (343)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHhhcccCCc--------h----------hhhccHHHHHHHHHHHHHHcCcCCCCHHH
Confidence 56688999988888888877543 22001110 0 0111111155667788888873 345566
Q ss_pred HHHHHHHHHHHhhhhhhcc--ccccccc-----ccccccc--chHHHHHHHHHhcCCHHHHHHHhhccc-------cccc
Q 005721 80 TTWMVEYFYNRVQNVIKKY--SIERHWQ-----TLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDK-------PCFL 143 (681)
Q Consensus 80 a~~~ad~~~~~~~~~~~~~--~~~~~~~-----~l~~E~G--Gmne~L~~LY~~TGd~~yL~lA~~f~~-------~~~~ 143 (681)
+.+.++.+.+......... ....+|. .+.-.+| |+..+|..++..++++++++.++...+ +.-.
T Consensus 127 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGI~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~g~ 206 (343)
T cd04794 127 IKSICDAILESGRTGAAKYRAPCPLMYEWHGKEYLGAAHGLAGILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQFPSGN 206 (343)
T ss_pred HHHHHHHHHHHHHHhhhccCCCCCccccccCceecchhhhHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHHHhhccCCC
Confidence 6666665443221111100 0001111 0111233 677899999999999999998875321 0111
Q ss_pred hhhhhcCCCCCCCcccCcccc--chHHHHHHHHhCChHHHHHHHHHHHHhhccceeeecCCCCCCCCCCCcccccCCCCC
Q 005721 144 GLLALQADDISGFHSNTHIPI--VIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSN 221 (681)
Q Consensus 144 ~~l~~~~D~l~g~HanthiP~--~~G~a~~Y~~TGd~~y~~aa~~f~d~v~~~h~y~tGG~s~~E~f~~p~~l~~~l~~~ 221 (681)
||...+.+.-....+--|... +......|++++|+.+++.++..-+.+.++... . ..
T Consensus 207 w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~--------------------~~ 265 (343)
T cd04794 207 FPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEAAIKCGELIWKRGLL-K--------------------KG 265 (343)
T ss_pred CCCccCCCCCCccccccCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCc-c--------------------CC
Confidence 221111000000001123332 233456789999999999888776665432110 0 00
Q ss_pred cccchhhHHHHHHHHHHhcccCCchhHHHHHHHHhhh
Q 005721 222 TEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNG 258 (681)
Q Consensus 222 ~~EtCas~nmlkl~~~Lf~~tgd~~YaD~~EralyN~ 258 (681)
.+=.|...+.+...-+|++.++|.+|.+...+.+=..
T Consensus 266 ~~lCHG~~G~~~~lL~~~~~~~~~~~~~~a~~~~~~~ 302 (343)
T cd04794 266 PGLCHGIAGNAYAFLLLYRLTGDLKYLYRACKFAEFL 302 (343)
T ss_pred CccccCccchHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 1222233444566667888999999998877665433
No 27
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=94.56 E-value=0.36 Score=52.47 Aligned_cols=128 Identities=13% Similarity=0.037 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhhhhcccc--cc--cccccccccc--chHHHHHHHHHhcCCHHHHHH
Q 005721 60 ILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSI--ER--HWQTLNEEAG--GMNDVLYKLFCITQDPKHLML 133 (681)
Q Consensus 60 I~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~--~~--~~~~l~~E~G--Gmne~L~~LY~~TGd~~yL~l 133 (681)
|+..|+..+..+++++.++.+.+..+|+.+...+. ..++. .. .-....=-+| |+..++..+|+.++|+++++.
T Consensus 170 I~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~-g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~ 248 (343)
T cd04794 170 ILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQFPS-GNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEA 248 (343)
T ss_pred HHHHHHhhhhhcCCccHHHHHHHHHHHHHHhhccC-CCCCCccCCCCCCccccccCCCchHHHHHHHHHHHhCCHHHHHH
Confidence 56667788888899999999999999997642110 00000 00 0000001234 688999999999999999998
Q ss_pred HhhccccccchhhhhcCCCCCCCcccCccc--cchHHHHHHHHhCChHHHHHHHHHHHHhhcc
Q 005721 134 AHLFDKPCFLGLLALQADDISGFHSNTHIP--IVIGSQMRYEVTGDQLHKTISMFFMDIVNSS 194 (681)
Q Consensus 134 A~~f~~~~~~~~l~~~~D~l~g~HanthiP--~~~G~a~~Y~~TGd~~y~~aa~~f~d~v~~~ 194 (681)
|+...+.- +. ...+..-+..-|.- +..+..+.|+.|+|+.|++.|..+.+.+.++
T Consensus 249 ~~~~~~~~--~~----~g~~~~~~~lCHG~~G~~~~lL~~~~~~~~~~~~~~a~~~~~~~~~~ 305 (343)
T cd04794 249 AIKCGELI--WK----RGLLKKGPGLCHGIAGNAYAFLLLYRLTGDLKYLYRACKFAEFLINY 305 (343)
T ss_pred HHHHHHHH--HH----hCCccCCCccccCccchHHHHHHHHHHhCcHHHHHHHHHHHHHHhcc
Confidence 87754321 10 00110001122333 2455778899999999999999999988754
No 28
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=94.49 E-value=0.17 Score=50.82 Aligned_cols=132 Identities=20% Similarity=0.134 Sum_probs=75.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhccccccchhhhh-c----CCC-C---------CCCc-ccCccccchHHHHHHHHhCCh
Q 005721 115 NDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLAL-Q----ADD-I---------SGFH-SNTHIPIVIGSQMRYEVTGDQ 178 (681)
Q Consensus 115 ne~L~~LY~~TGd~~yL~lA~~f~~~~~~~~l~~-~----~D~-l---------~g~H-anthiP~~~G~a~~Y~~TGd~ 178 (681)
..+|+|.|++|||++||+.|++.-+. |.-+..+ + ... . +..| -|.||=.++|.-..+..|+++
T Consensus 36 ~s~l~RAy~~t~d~~Yl~aA~~al~~-f~~~~~~GG~~~~~~~~~~wyeEYp~~p~s~VLNGfiysL~GLyd~~~~~~~~ 114 (189)
T PF06662_consen 36 ISVLARAYQLTGDEKYLDAAKKALNS-FKVPVEEGGVLATFKNKYPWYEEYPTTPPSYVLNGFIYSLIGLYDYYRLTGDE 114 (189)
T ss_pred HHHHHHHHHhHCCHHHHHHHHHHHHH-hcChHhhCCeeEEecCCcEeEeecCCCCCCEEeehHHHHHHHHHHHHHhcCCH
Confidence 36899999999999999999984321 1111100 0 000 0 0001 244444457777788899998
Q ss_pred HHHHHHHHHHHHhhcc-ceeeecCCCCCC--CCCCCcccccCCCCCcccchhhHHHHHHHHHHhcccCCchhHHHHHH
Q 005721 179 LHKTISMFFMDIVNSS-HTYATGGTSVGE--FWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYER 253 (681)
Q Consensus 179 ~y~~aa~~f~d~v~~~-h~y~tGG~s~~E--~f~~p~~l~~~l~~~~~EtCas~nmlkl~~~Lf~~tgd~~YaD~~Er 253 (681)
..++.-+...+.+... ..|-+|+.|... |+... ..++.-+..|. .. .+.....|..+|+|+.+.+++||
T Consensus 115 ~A~~lf~~Gl~sLk~~Lp~yD~G~wS~Ydl~h~~~~-~~~~~a~~~YH--~l---Hi~qL~~L~~it~d~~f~~~a~r 186 (189)
T PF06662_consen 115 EAKELFDKGLKSLKKMLPLYDTGSWSRYDLRHFTLG-NAPNIARWDYH--RL---HIQQLKWLYSITGDPIFKEYAER 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCchhhccccccc-cCcCcCcchHH--HH---HHHHHHHHHHhcCCHHHHHHHHH
Confidence 7777666666665321 257777776432 22110 01110001111 11 24455679999999999999998
No 29
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=94.45 E-value=0.18 Score=60.17 Aligned_cols=109 Identities=14% Similarity=0.201 Sum_probs=78.9
Q ss_pred cccCCchHHHHHHHHHHHHHHHhhhhC-CCceeeccCCchhhhhhccCCCcccccchHHHHHHHHHHHHHcCCHHHHHHH
Q 005721 2 WASTHNESLKEKMSAVVSALSACQKEI-GSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMT 80 (681)
Q Consensus 2 ya~t~D~~L~~k~~~~V~~l~~~Q~~~-~dGYl~~~~~~~~~~~~~~~~~W~pyy~~HkI~aGLld~y~~tG~~~aL~va 80 (681)
|+.+.|..|.+.+...|..|..|-++. ..+|+++-. + +..-|+..|..+..++.|++|
T Consensus 709 ~~~~~~~~l~~~~~~~i~~le~~v~~~~~~d~i~Gl~-------------------g--~i~~L~~iYk~~~epk~l~~a 767 (963)
T COG4403 709 YSVTRDNYLIQSAENSIRHLEILVQKSKDPDFINGLA-------------------G--VICVLVSIYKLTDEPKFLELA 767 (963)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHhhccCcchhhccH-------------------H--HHHHHHHHHhhccchHHHHHH
Confidence 567899999999999999998886532 234443321 0 334467899999999999999
Q ss_pred HHHHHHHHHHhhhhhhcccccccccc-cccccc--chHHHHHHHHHhcCCHHHHHHHhhc
Q 005721 81 TWMVEYFYNRVQNVIKKYSIERHWQT-LNEEAG--GMNDVLYKLFCITQDPKHLMLAHLF 137 (681)
Q Consensus 81 ~~~ad~~~~~~~~~~~~~~~~~~~~~-l~~E~G--Gmne~L~~LY~~TGd~~yL~lA~~f 137 (681)
..+++++++..-... + +-.+ +.-.+| |+..+|.+||+.|||+++++.++-.
T Consensus 768 is~~~~l~~~~v~~d-----~-s~~~l~gfshg~sgi~~tL~~ly~~T~e~~l~~~i~e~ 821 (963)
T COG4403 768 ISLGRILMEKIVGND-----S-SETVLLGFSHGASGIILTLLKLYEATGEESLLKKIKEL 821 (963)
T ss_pred HHHHHHHHHHhhccc-----c-ccceecccccchHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999986433221 1 1112 223444 7889999999999999999998643
No 30
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=93.86 E-value=0.21 Score=53.85 Aligned_cols=138 Identities=19% Similarity=0.096 Sum_probs=78.3
Q ss_pred cccchHHHHHHHHHhcCCHHHHHHHhhccccccchh-hhhcCCCCCCCcccCccccchH--HHHHHHHhCChHHHHHHHH
Q 005721 110 EAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGL-LALQADDISGFHSNTHIPIVIG--SQMRYEVTGDQLHKTISMF 186 (681)
Q Consensus 110 E~GGmne~L~~LY~~TGd~~yL~lA~~f~~~~~~~~-l~~~~D~l~g~HanthiP~~~G--~a~~Y~~TGd~~y~~aa~~ 186 (681)
|.|=.--.++++|+.|||++||+..+...+..+... + ..+.+ .| +..| ..-+|+.|||++|++++..
T Consensus 37 e~GV~lyGv~~~~eAT~d~~yl~~l~~~~d~~i~~~g~--~~~~i------d~--i~~g~~L~~L~e~T~~~~Yl~~a~~ 106 (357)
T COG4225 37 EQGVFLYGVARAYEATGDAEYLDYLKTWFDEQIDEGGL--PPRNI------DH--IAAGLTLLPLYEQTGDPRYLEAAIK 106 (357)
T ss_pred cccchHHHHHHHHHHcCcHHHHHHHHHHHHhhhccCCC--Cccch------hh--hccCceeeehhhhhCCHHHHHHHHH
Confidence 444233578999999999999998875432222111 0 00111 11 1223 3457999999999999999
Q ss_pred HHHHhhccceeeecCCCCCCCCCCCcccccCCCCCcccchhh--HHHHHHHHHHhcccCCchhHHHHHHHHhhhcccccC
Q 005721 187 FMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTT--YNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQR 264 (681)
Q Consensus 187 f~d~v~~~h~y~tGG~s~~E~f~~p~~l~~~l~~~~~EtCas--~nmlkl~~~Lf~~tgd~~YaD~~EralyN~ila~q~ 264 (681)
+-+.++.+--+--|| +|+... .+ ..==|.+ ..-+++ -++=+.+++++|+|.+=+.+-=+.---++
T Consensus 107 ~a~~l~~~~Rt~eG~-----f~H~~~-~p------~Q~W~DtL~Ma~~F~-ak~g~~~~~~e~~d~~~~QF~~~~~~l~D 173 (357)
T COG4225 107 LASWLVHEPRTKEGG-----FQHKVK-YP------HQMWLDTLYMAGLFL-AKYGQVTGRPEYFDEALYQFSLHEKYLRD 173 (357)
T ss_pred HHHHHhhCcccCCCc-----cccccC-ch------hHhhhcchhhhhHHH-HHHHHHhCCHHHHHHHHHHHHHHHHHccC
Confidence 999987433222232 232211 11 1111222 111222 23556789999999887777655544566
Q ss_pred CCCCCeE
Q 005721 265 GTEPGVM 271 (681)
Q Consensus 265 ~~~~g~~ 271 (681)
| ++|-|
T Consensus 174 p-~TGL~ 179 (357)
T COG4225 174 P-ETGLY 179 (357)
T ss_pred C-CcCce
Confidence 5 55544
No 31
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=93.34 E-value=1.6 Score=48.02 Aligned_cols=184 Identities=14% Similarity=-0.021 Sum_probs=98.3
Q ss_pred CchHHHHHHHHHHHHHHHhhhhCCCceeeccCCchhhhhhc-cCCCccccc-chHH---HHHHHHHHHHHc-CCHHHHHH
Q 005721 6 HNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEA-LIPVWAPYY-TIHK---ILAGLLDQYTYA-DNAEALRM 79 (681)
Q Consensus 6 ~D~~L~~k~~~~V~~l~~~Q~~~~dGYl~~~~~~~~~~~~~-~~~~W~pyy-~~Hk---I~aGLld~y~~t-G~~~aL~v 79 (681)
.+.+....+..+++.|.+.+.....+|+-.... +...+. ..+...++- -.|- |+..|...|+.+ ++++.+++
T Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~ 197 (382)
T cd04793 120 PDSELLREILDYLVYLTEPLNQDITLYIWSENQ--PSETESKEFPEGHINLGLAHGIAGPLALLALAKERGIRVDGQLEA 197 (382)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCCCccCcCcC--CCccccccCCCccccccchhcchHHHHHHHHHHHcCCCcCChHHH
Confidence 456666777777787777644223333322111 110100 000111110 0132 455555667777 89999999
Q ss_pred HHHHHHHHHHHhhhhhh-cccccc-----------ccc---ccccccc--chHHHHHHHHHhcCCHHHHHHHhhcccccc
Q 005721 80 TTWMVEYFYNRVQNVIK-KYSIER-----------HWQ---TLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFDKPCF 142 (681)
Q Consensus 80 a~~~ad~~~~~~~~~~~-~~~~~~-----------~~~---~l~~E~G--Gmne~L~~LY~~TGd~~yL~lA~~f~~~~~ 142 (681)
+.+..+|+.+.+...-. .+...+ ... ...=-+| |+..++..+++.++|+++++.|....+...
T Consensus 198 i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~ 277 (382)
T cd04793 198 IQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPGIARALQLAGKALDDQKLQEAAEKILKAAL 277 (382)
T ss_pred HHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99999988654421100 000000 000 0000234 688999999999999999999887643222
Q ss_pred chhhhhcCCCCCCCcccCccc--cchHHHHHHHHhCChHHHHHHHHHHHHhhcc
Q 005721 143 LGLLALQADDISGFHSNTHIP--IVIGSQMRYEVTGDQLHKTISMFFMDIVNSS 194 (681)
Q Consensus 143 ~~~l~~~~D~l~g~HanthiP--~~~G~a~~Y~~TGd~~y~~aa~~f~d~v~~~ 194 (681)
...... ... ..+..-|.. +.....+.|+.|+|+.++++++++.+.+..+
T Consensus 278 ~~~~~~--~~~-~~~~lChG~~G~~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~ 328 (382)
T cd04793 278 KDKKQL--SKL-ISPTLCHGLAGLLFIFYLLYKDTNTNEFKSALEYLLNQIISS 328 (382)
T ss_pred hChhhh--ccC-CCCCcCccHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 110000 000 112233333 2334567799999999999999998887643
No 32
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=91.84 E-value=1.1 Score=45.07 Aligned_cols=128 Identities=18% Similarity=0.246 Sum_probs=78.8
Q ss_pred cccCCchHHHHHHHHHHHHHHHhhhhCCCceeeccCC-c-hhhhhhccCCCcccccchHHH-HHHHHHHHHHcCCHHHHH
Q 005721 2 WASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPT-E-QFDRLEALIPVWAPYYTIHKI-LAGLLDQYTYADNAEALR 78 (681)
Q Consensus 2 ya~t~D~~L~~k~~~~V~~l~~~Q~~~~dGYl~~~~~-~-~~~~~~~~~~~W~pyy~~HkI-~aGLld~y~~tG~~~aL~ 78 (681)
|..|+|++..+.+++.++-...-=+ ..|-+..+.. . ++++.-...... -.++|.. +.||-|.+..+++++|.+
T Consensus 43 y~~t~d~~Yl~aA~~al~~f~~~~~--~GG~~~~~~~~~~wyeEYp~~p~s~--VLNGfiysL~GLyd~~~~~~~~~A~~ 118 (189)
T PF06662_consen 43 YQLTGDEKYLDAAKKALNSFKVPVE--EGGVLATFKNKYPWYEEYPTTPPSY--VLNGFIYSLIGLYDYYRLTGDEEAKE 118 (189)
T ss_pred HHhHCCHHHHHHHHHHHHHhcChHh--hCCeeEEecCCcEeEeecCCCCCCE--EeehHHHHHHHHHHHHHhcCCHHHHH
Confidence 6789999999999998888765555 4565554332 1 222221111111 2456654 789999999999999888
Q ss_pred HHHHHHHHHHHHhhhhhhccccccccc--cc-c------------ccccchHHHHHHHHHhcCCHHHHHHHhhcc
Q 005721 79 MTTWMVEYFYNRVQNVIKKYSIERHWQ--TL-N------------EEAGGMNDVLYKLFCITQDPKHLMLAHLFD 138 (681)
Q Consensus 79 va~~~ad~~~~~~~~~~~~~~~~~~~~--~l-~------------~E~GGmne~L~~LY~~TGd~~yL~lA~~f~ 138 (681)
+-.+-.+=+.+.+ +.++.. .|. .+ | .-+.-...-|.+||.+|||+.+.+.|+++.
T Consensus 119 lf~~Gl~sLk~~L----p~yD~G-~wS~Ydl~h~~~~~~~~~a~~~YH~lHi~qL~~L~~it~d~~f~~~a~rW~ 188 (189)
T PF06662_consen 119 LFDKGLKSLKKML----PLYDTG-SWSRYDLRHFTLGNAPNIARWDYHRLHIQQLKWLYSITGDPIFKEYAERWK 188 (189)
T ss_pred HHHHHHHHHHHHH----HhhhcC-CCchhhccccccccCcCcCcchHHHHHHHHHHHHHHhcCCHHHHHHHHHhc
Confidence 7666555554433 222221 111 11 0 011112356889999999999999999874
No 33
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=91.48 E-value=1.1 Score=48.07 Aligned_cols=117 Identities=20% Similarity=0.189 Sum_probs=74.7
Q ss_pred CchHHHHHHHHHHHHHHHhhhhCCCceeeccCCchhhhhhccCCCcccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005721 6 HNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVE 85 (681)
Q Consensus 6 ~D~~L~~k~~~~V~~l~~~Q~~~~dGYl~~~~~~~~~~~~~~~~~W~pyy~~HkI~aGLld~y~~tG~~~aL~va~~~ad 85 (681)
.++++.+-+..-|+.+.+.|. ++|-.-+--....+++- ++.|. =++ +.--|..+|+.-+.++.|+.+...+|
T Consensus 239 d~~~~~~dVK~sldym~~~rf--psGNyP~s~~~~~drLV--hWcHG--ApG--v~~~L~kAy~VF~Eekyl~aa~ecad 310 (403)
T KOG2787|consen 239 DQPALLKDVKGSLDYMIQNRF--PSGNYPSSEGNKRDRLV--HWCHG--APG--VAYTLAKAYQVFKEEKYLEAAMECAD 310 (403)
T ss_pred cchhHHHhhhhHHHHHHHccC--CCCCCCcccCCCcceee--eeccC--Cch--HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 466788888999999988888 87753221111233331 11111 111 22224578999999999999999999
Q ss_pred HHHHHhhhhhhc-cccccccccccccccchHHHHHHHHHhcCCHHHHHHHhhccc
Q 005721 86 YFYNRVQNVIKK-YSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDK 139 (681)
Q Consensus 86 ~~~~~~~~~~~~-~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~~yL~lA~~f~~ 139 (681)
-+.++ .++.+ ..+ -|+.. |-.-++.-||++|||.+||-=|+.|.+
T Consensus 311 vVW~r--GlLkkg~Gi------chGva-GNaYvFLsLyRLT~d~kYlyRA~kFae 356 (403)
T KOG2787|consen 311 VVWKR--GLLKKGVGI------CHGVA-GNAYVFLSLYRLTGDMKYLYRAKKFAE 356 (403)
T ss_pred HHHHh--hhhhcCCcc------ccccc-CchhhhHhHHHHcCcHHHHHHHHHHHH
Confidence 99875 22222 111 11111 223588889999999999999998854
No 34
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=90.79 E-value=0.35 Score=54.93 Aligned_cols=192 Identities=17% Similarity=0.105 Sum_probs=103.2
Q ss_pred ccCCchHHHHHHHHHHHHHHHhhhhC-CCceeeccCCchhhhhhc----cCCCcccccchHHHHHHHHHHHHHcC--CHH
Q 005721 3 ASTHNESLKEKMSAVVSALSACQKEI-GSGYLSAFPTEQFDRLEA----LIPVWAPYYTIHKILAGLLDQYTYAD--NAE 75 (681)
Q Consensus 3 a~t~D~~L~~k~~~~V~~l~~~Q~~~-~dGYl~~~~~~~~~~~~~----~~~~W~pyy~~HkI~aGLld~y~~tG--~~~ 75 (681)
..|+|+.+.++++++.+.|.+.|... .+|=++..-...-..+.. ....=-.|| .-|+.+|.++| +++
T Consensus 158 ~lTgd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~Y------EYLlK~~lL~g~~d~~ 231 (452)
T PF01532_consen 158 QLTGDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFY------EYLLKMYLLLGGTDEQ 231 (452)
T ss_dssp HHHS-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHH------HHHHHHHHHTTTTTHH
T ss_pred HHhhccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCcCcccccccccCCCcchHH------HhhhhhhhhcCccchH
Confidence 46999999999999999999977421 344444321100001110 111111344 56889999999 888
Q ss_pred HHHHHHHHHHHHHHHhhhh--hhc---------cc--cc---ccc-ccccccccchHHHHHHHHHhcCCHHHHHHHhhcc
Q 005721 76 ALRMTTWMVEYFYNRVQNV--IKK---------YS--IE---RHW-QTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFD 138 (681)
Q Consensus 76 aL~va~~~ad~~~~~~~~~--~~~---------~~--~~---~~~-~~l~~E~GGmne~L~~LY~~TGd~~yL~lA~~f~ 138 (681)
.+++-....+-+.+.+... .+. .. .+ .++ ..+.|-.|||-.--.++ -++++++++|+.+.
T Consensus 232 ~~~~~~~a~~~i~~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l~Lg~~~---~~~~~~~~~A~~l~ 308 (452)
T PF01532_consen 232 YRDMYDEAVDAIKKHLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGMLALGAKL---FNDEGDLELAEELT 308 (452)
T ss_dssp HHHHHHHHHHHHHHHTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGGHHHHHHHHHHT---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCccceeEeeeeecccCccccccccchhhcchhHHHHhhcc---cCchhHHHHHHHHH
Confidence 8888887777776653211 111 00 00 001 12456666763222222 26799999998875
Q ss_pred ccccc---------hhhhhcCCC------------CC----CCcccCccc-cchHHHHHHHHhCChHHHHHHHHHHHHhh
Q 005721 139 KPCFL---------GLLALQADD------------IS----GFHSNTHIP-IVIGSQMRYEVTGDQLHKTISMFFMDIVN 192 (681)
Q Consensus 139 ~~~~~---------~~l~~~~D~------------l~----g~HanthiP-~~~G~a~~Y~~TGd~~y~~aa~~f~d~v~ 192 (681)
+.|+. .|....-+. .. ....+-.-| .++..-.+|++|||+.|++.+...|+.+.
T Consensus 309 ~~C~~~y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~LRPE~iES~fylyR~TgD~~yre~gw~if~ai~ 388 (452)
T PF01532_consen 309 ETCYWLYKSTPTGLGPEIFSFDPCEENCQWDEERKDFMIKISDPRYLLRPETIESLFYLYRATGDPKYREWGWDIFQAIE 388 (452)
T ss_dssp HHHHHHHHTSSSSS--SEEEESCSCG--TEETGGCSCCHHGGG--B-S--HHHHHHHHHHHHH-BHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCceEEEeeccccccccchhhcccccccccccccchhhhhhheeEEEEEcCCchHHHHHHHHHHHHH
Confidence 44321 111111010 00 000111122 24566778999999999999999999987
Q ss_pred ccceeeecCCCC
Q 005721 193 SSHTYATGGTSV 204 (681)
Q Consensus 193 ~~h~y~tGG~s~ 204 (681)
+ |.-+-.|.++
T Consensus 389 k-~~r~~~G~a~ 399 (452)
T PF01532_consen 389 K-YCRTECGYAG 399 (452)
T ss_dssp H-HTEETTEE--
T ss_pred H-hcccceehhh
Confidence 5 6655556654
No 35
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=90.65 E-value=3.1 Score=46.01 Aligned_cols=132 Identities=14% Similarity=0.092 Sum_probs=81.6
Q ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhhh----hcccccccccccccccc-c------hH--HHHHHHH
Q 005721 56 TIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVI----KKYSIERHWQTLNEEAG-G------MN--DVLYKLF 122 (681)
Q Consensus 56 ~~HkI~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~~----~~~~~~~~~~~l~~E~G-G------mn--e~L~~LY 122 (681)
++|++ .++|+.|+.+|.+..++.+.+.|+-+..+|-... .....+. |.+.+.+.| | ++ --|.++-
T Consensus 176 ~MHl~-EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~d-W~p~~~frg~~~ePGH~fEW~~Lll~~a 253 (388)
T COG2942 176 HMHLL-EAMLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHD-WNPAHGFRGRGIEPGHQFEWAWLLLDIA 253 (388)
T ss_pred chHHH-HHHHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhcccc-CCcCCCcccCCCCCchHHHHHHHHHHHH
Confidence 56755 5667899999999999999999999999875421 1111111 443333333 2 22 3567788
Q ss_pred HhcCCHHHHHHHhhccccccchhhhhcCCCCC-CC------cccCc------ccc--chHH-HHHHHHhC-ChHHHHHHH
Q 005721 123 CITQDPKHLMLAHLFDKPCFLGLLALQADDIS-GF------HSNTH------IPI--VIGS-QMRYEVTG-DQLHKTISM 185 (681)
Q Consensus 123 ~~TGd~~yL~lA~~f~~~~~~~~l~~~~D~l~-g~------Hanth------iP~--~~G~-a~~Y~~TG-d~~y~~aa~ 185 (681)
+.-|+...++.|+++.+.... .+-|.-. +. -...| -|+ .+++ ..+++.|| ++.|.+...
T Consensus 254 ~~~~~~~l~~~A~~lf~~a~~----~g~d~~~gg~~~sl~~D~~~~d~~~r~WpQ~E~l~AA~ala~~~~~~~~y~~~~~ 329 (388)
T COG2942 254 RRRGRAWLIEAARRLFDIAVA----DGWDPERGGAYYSLDDDGSPHDRQQRLWPQTEALKAAVALAETTGARERYWQWYA 329 (388)
T ss_pred HHhchhHHHHHHHHHHHHHHH----hccCcccCeEEEEecCCCCcCCHHHhhChHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 888999999999886432211 1111100 00 01122 222 2444 44578899 899999999
Q ss_pred HHHHHhhc
Q 005721 186 FFMDIVNS 193 (681)
Q Consensus 186 ~f~d~v~~ 193 (681)
++|+-...
T Consensus 330 R~~~~~~~ 337 (388)
T COG2942 330 RAWDYLWW 337 (388)
T ss_pred HHHHHHHH
Confidence 99988764
No 36
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=89.84 E-value=4 Score=45.99 Aligned_cols=244 Identities=15% Similarity=0.081 Sum_probs=114.2
Q ss_pred CchHHHHHHHHHHHHHHHhhhhCCCceeeccC------CchhhhhhccC-CCcccccc-h-------HHHHHHHHHHHHH
Q 005721 6 HNESLKEKMSAVVSALSACQKEIGSGYLSAFP------TEQFDRLEALI-PVWAPYYT-I-------HKILAGLLDQYTY 70 (681)
Q Consensus 6 ~D~~L~~k~~~~V~~l~~~Q~~~~dGYl~~~~------~~~~~~~~~~~-~~W~pyy~-~-------HkI~aGLld~y~~ 70 (681)
+=+.+++.++.-+|+|++||. ++|.|-.-- ...|.+.+... ....+.+. . -.+-+.|-.+++.
T Consensus 92 ~~~dllde~kwg~D~llkm~~--~~~~~~~qvgdg~~~h~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~As~v 169 (444)
T PF00759_consen 92 GIPDLLDEAKWGLDWLLKMQD--SDGTFYAQVGDGGVDHKVWGRPEIMPDDDPSYRYDAPNPGTDATAEFAAALAAASRV 169 (444)
T ss_dssp SHHHHHHHHHHHHHHHHHTBS--CTTEEEEEESTHHHHHTEESTGGGTGSGESEEEEETTB-EHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhccC--CCCceeeeccCccchhhcccCCCCCCCCCCcceEecCCCchHHHHHHHHHHHHHHHh
Confidence 347899999999999999999 655432210 01122211110 00111010 0 1122333334444
Q ss_pred cCC------HHHHHHHHHHHHHHHHHhhhhhhcc-cc-cccccc--ccccccchHHHHHHHHHhcCCHHHHHHHhhcccc
Q 005721 71 ADN------AEALRMTTWMVEYFYNRVQNVIKKY-SI-ERHWQT--LNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKP 140 (681)
Q Consensus 71 tG~------~~aL~va~~~ad~~~~~~~~~~~~~-~~-~~~~~~--l~~E~GGmne~L~~LY~~TGd~~yL~lA~~f~~~ 140 (681)
-.+ ++.|+.|+++-+|..+.-....... .. ...... ...| +..+-+|||+.|||++|++.|+.+...
T Consensus 170 ~k~~d~~~A~~~L~~A~~~~~~a~~~~~~~~~~~~~~~~~~Y~~~~~~De---~~wAA~~Ly~aTg~~~Y~~~a~~~~~~ 246 (444)
T PF00759_consen 170 FKDFDPAYAAQCLKAAKEAYAFAKKNPGVYSDNPQPNGGGFYNSSGYEDE---LAWAAAELYRATGDESYLDYAKEYYDD 246 (444)
T ss_dssp HTTTTHHHHHHHHHHHHHHHHHHHHSTTHGGGTSTCTTTTTSHCS-SHHH---HHHHHHHHHHHHT-HHHHHHHHHHCCT
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCcccccCCcccCCCcccH---HHHHHHHHHHhcCcHHHHHHHHHhHHh
Confidence 333 4788899999888876433221111 00 000000 0112 345788999999999999999877532
Q ss_pred ccchhhhhcCCCCCCCcccCccccchH-HHHHHHHh-C-------ChHHHHHHHHHHHHhhccceeeecCCCCCCCCCCC
Q 005721 141 CFLGLLALQADDISGFHSNTHIPIVIG-SQMRYEVT-G-------DQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDP 211 (681)
Q Consensus 141 ~~~~~l~~~~D~l~g~HanthiP~~~G-~a~~Y~~T-G-------d~~y~~aa~~f~d~v~~~h~y~tGG~s~~E~f~~p 211 (681)
...... .+. ..+.. -.+..+ ...+...+ . .+.+++.+..+.+..... .+ |.. ...|
T Consensus 247 ~~~~~~---~~~-~~~~W---~~~~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~-----~~~~ 311 (444)
T PF00759_consen 247 LEASQW---SNE-WSFSW---DNKAAGAQLLLAKLTNDDPSRDAAREQYKSAADKFLNKWLND-GY--GSV-----PYTP 311 (444)
T ss_dssp SSBSTT---SSS-SSSCT---TBSHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHS-TT--TBS-----EBCT
T ss_pred hccccc---ccc-cccch---hhhhhhhhHHHHhcccchhhhHHHHHHHHHHHHHHHHHHhhc-cC--CCc-----ccCc
Confidence 211100 000 00111 112222 33334444 1 345667777777776543 11 110 0001
Q ss_pred cccccCCCCCcc-cchhhHHHHHHHHHHh---cccCCchhHHHHHHHHhhhcccccCCCCCCeEEEecCCC
Q 005721 212 KRLASNLDSNTE-ESCTTYNMLKVSRHLF---RWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLA 278 (681)
Q Consensus 212 ~~l~~~l~~~~~-EtCas~nmlkl~~~Lf---~~tgd~~YaD~~EralyN~ila~q~~~~~g~~~Y~~pl~ 278 (681)
..+.. ...-+. ... .+..+++ .++ .++++.+|.++.++.+ |=|||. +| -...|++-++
T Consensus 312 ~g~~~-~~~WGs~~~~--~~~a~l~-~~~~~~~~~~~~~y~~~a~~ql-dyiLG~-Np---~~~SyV~G~G 373 (444)
T PF00759_consen 312 GGLAW-IYEWGSNRYA--ANAAFLA-LAYAKYDLTGDQEYRDFAQSQL-DYILGR-NP---FGQSYVTGYG 373 (444)
T ss_dssp TSSBE-SESTTHHHHH--HHHHHHH-HHHHHTCHCHHHHHHHHHHHHH-HHHHTT-ST---T--BSBTTSS
T ss_pred ccccc-ccCCCccHHH--HHHHHHH-HHHHhcccCChHHHHHHHHHHh-hhhcCc-CC---CCceeeecCC
Confidence 10100 000111 111 1222222 233 5899999999999877 777876 33 2345665554
No 37
>PLN02345 endoglucanase
Probab=85.16 E-value=78 Score=36.39 Aligned_cols=124 Identities=12% Similarity=0.092 Sum_probs=64.4
Q ss_pred CchHHHHHHHHHHHHHHHhhhhCCCceeec-cCCc-----hhhhhhccCCCcccccch----------HHHHHHHHHHHH
Q 005721 6 HNESLKEKMSAVVSALSACQKEIGSGYLSA-FPTE-----QFDRLEALIPVWAPYYTI----------HKILAGLLDQYT 69 (681)
Q Consensus 6 ~D~~L~~k~~~~V~~l~~~Q~~~~dGYl~~-~~~~-----~~~~~~~~~~~W~pyy~~----------HkI~aGLld~y~ 69 (681)
.-+.+++.++.-.|+|++||. .+|-+-. .-.. .+.+=|... ..-|.|.+ -.+-++|-.++.
T Consensus 80 ~~~~~ldelkw~~Dyllk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~-~~R~~~~~~~~~pgsd~a~~~AAAlA~as~ 156 (469)
T PLN02345 80 QLDSAKDSLKWITDYLINAHP--SENVLYIQVGDPKLDHKCWERPETMD-EKRPLTKINTSSPGSEVAAETAAAMAAASL 156 (469)
T ss_pred chHHHHHHHhHHHHHHHHhcC--CCCeEEEEecCCCCCcccCCChhhcC-CcceEEecCCCCCCcHHHHHHHHHHHHHHH
Confidence 347889999999999999998 5554321 1010 111111111 01121211 123344434444
Q ss_pred HcCC------HHHHHHHHHHHHHHHHHhhhhhhcccc-cccccc--ccccccchHHHHHHHHHhcCCHHHHHHHh
Q 005721 70 YADN------AEALRMTTWMVEYFYNRVQNVIKKYSI-ERHWQT--LNEEAGGMNDVLYKLFCITQDPKHLMLAH 135 (681)
Q Consensus 70 ~tG~------~~aL~va~~~ad~~~~~~~~~~~~~~~-~~~~~~--l~~E~GGmne~L~~LY~~TGd~~yL~lA~ 135 (681)
.-.+ .+.|+.|+++-+|..+.-+......+. ...... ...| +..+-+|||..|||+.||+.+.
T Consensus 157 vfk~~D~~YA~~lL~~Ak~ly~fa~~~~g~y~~~~~~~~~~Y~s~~~~DE---l~WAAawLy~ATgd~~Yl~~~~ 228 (469)
T PLN02345 157 VFKSSDSTYSDTLLKHAKQLFNFADKYRGSYSESIPEVQDYYNSTGYGDE---LLWAASWLYHATGDKTYLAYVT 228 (469)
T ss_pred HhccCCHHHHHHHHHHHHHHHHHHHhCCCcccCCCCccCCCCCCcccccH---HHHHHHHHHHHhCCHHHHHHHH
Confidence 4333 467888888888886532111000000 000000 1122 3467889999999999999874
No 38
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=83.60 E-value=2 Score=48.63 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhhhhcccccc----ccccccccccchHHHHHHHHHhcCCHHHHHHHh
Q 005721 60 ILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNVIKKYSIER----HWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAH 135 (681)
Q Consensus 60 I~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~~~~----~~~~l~~E~GGmne~L~~LY~~TGd~~yL~lA~ 135 (681)
.+..++-+|+..+++...++++.|++-+- ++.+ ....... +......-+ +..++.+||+.|++++||++|.
T Consensus 389 yll~~vra~~~s~D~~Lw~~~~~m~~~~g--LGdi-g~~~~~~~~~~~~~~~~sp~--~L~allEL~~atq~~~~l~lA~ 463 (557)
T PF06917_consen 389 YLLPYVRAYRLSRDPELWDLARTMAHHFG--LGDI-GNAAGKEPRVNMQTDNASPY--LLFALLELYQATQDARYLELAD 463 (557)
T ss_dssp HHHHHHHHHHHS--HHHHHHHHHHHHHTT---EE--TTBTTBS-EE-TT-----HH--HHHHHHHHHHHH--HHHHHHHH
T ss_pred HhHHHHHHHHcCCCHHHHHHHHHHHhhcC--cccc-cCccccccccccCCCCCCHH--HHHHHHHHHHHhCCHHHHHHHH
Confidence 34456689999999999999999998552 2211 1111000 000000000 2368999999999999999998
Q ss_pred hc
Q 005721 136 LF 137 (681)
Q Consensus 136 ~f 137 (681)
.+
T Consensus 464 ~~ 465 (557)
T PF06917_consen 464 QV 465 (557)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 39
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=78.27 E-value=2.9 Score=44.94 Aligned_cols=123 Identities=20% Similarity=0.156 Sum_probs=72.1
Q ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhhhhhhccc----cc-----ccccccccccc--chHHHHHHHHHhcCC
Q 005721 60 ILAGLLDQY-TYADNAEALRMTTWMVEYFYNRVQNVIKKYS----IE-----RHWQTLNEEAG--GMNDVLYKLFCITQD 127 (681)
Q Consensus 60 I~aGLld~y-~~tG~~~aL~va~~~ad~~~~~~~~~~~~~~----~~-----~~~~~l~~E~G--Gmne~L~~LY~~TGd 127 (681)
|+..|.-.| +.+++++.++++.++.+|+.+........+. .. ..| | +| ||..++.++++.++|
T Consensus 172 i~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W----C-~G~~Gi~~~~~~~~~~~~~ 246 (355)
T PF05147_consen 172 ILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTDDGGWPDNRNNSNYKSRPSW----C-YGSPGILLALLKAYKILDD 246 (355)
T ss_dssp HHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TGCCT--SECTHHHHHC--SS----S-SSHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCcccCCCCCCCCcccccccccc----c-cCcHHHHHHHHHHHHhhch
Confidence 455555667 5888999999999999999875422100010 00 112 1 34 788999999999999
Q ss_pred HHHHHHHhhccccccchhhhhcCCCCCCCcccCccc--cchHHHHHHHHhCChHHHHHHHHHHHHhhc
Q 005721 128 PKHLMLAHLFDKPCFLGLLALQADDISGFHSNTHIP--IVIGSQMRYEVTGDQLHKTISMFFMDIVNS 193 (681)
Q Consensus 128 ~~yL~lA~~f~~~~~~~~l~~~~D~l~g~HanthiP--~~~G~a~~Y~~TGd~~y~~aa~~f~d~v~~ 193 (681)
+.+.+.+..+.+..... + ... ....--|.- ++.-...+|+.++++.|++.++.+++.+.+
T Consensus 247 ~~~~~~~~~~~~~~~~~----~-~~~-~~~~lCHG~aG~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (355)
T PF05147_consen 247 EEYDEEAEQALESILQK----G-LFL-NNPSLCHGTAGILEILLDLYKYTGDEEYKELANKLIQKLLS 308 (355)
T ss_dssp HHHHHHHHHHHHHHHHH------TCT-TSS-STTSHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHc----c-ccC-CCCceeCchHHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99999888664322111 0 000 001112222 122256679999999999999999988864
No 40
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=78.07 E-value=7.7 Score=43.17 Aligned_cols=186 Identities=18% Similarity=0.195 Sum_probs=99.4
Q ss_pred ccCCchHHHHHHHHHHHHHHHhhhhCCCceeeccCC---chhhhhhccC-CCc-ccccchHHHHHHHHHHHHHcCCHH-H
Q 005721 3 ASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPT---EQFDRLEALI-PVW-APYYTIHKILAGLLDQYTYADNAE-A 76 (681)
Q Consensus 3 a~t~D~~L~~k~~~~V~~l~~~Q~~~~dGYl~~~~~---~~~~~~~~~~-~~W-~pyy~~HkI~aGLld~y~~tG~~~-a 76 (681)
..|||+.+.+.+..+.+.|...-.+..||-..-|-. ..|.. +..+ +.. -.|| .-|+-++..+|+.. -
T Consensus 255 ~ltgd~kY~~~a~kv~ehih~~~~~~~dGLvPi~in~~tG~F~~-~tI~lGaRgDSyY------EYLlKQwlQtg~~~~~ 327 (546)
T KOG2431|consen 255 RLTGDPKYEELAEKVTEHIHGLGKKKHDGLVPIFINPNTGLFVG-STITLGARGDSYY------EYLLKQWLQTGKSLTY 327 (546)
T ss_pred hhcCCchHHHHHHHHHHHHhccCccccCCeeeEEEcCCCCcccc-ceEEeccccchHH------HHHHHHHHHcccchhH
Confidence 358999999999999999988777667886554421 11211 1110 111 1455 45778898888764 1
Q ss_pred -----HHHHHHHHHHHHHHhhhhhhcccccccccc---------------ccccccchHHHHHHHHHhcCCHHHHHHHhh
Q 005721 77 -----LRMTTWMVEYFYNRVQNVIKKYSIERHWQT---------------LNEEAGGMNDVLYKLFCITQDPKHLMLAHL 136 (681)
Q Consensus 77 -----L~va~~~ad~~~~~~~~~~~~~~~~~~~~~---------------l~~E~GGmne~L~~LY~~TGd~~yL~lA~~ 136 (681)
.+.+..|-.++.++-.+ ..+|.+ +.|-.+|. .++=-.--.+-++++|+||+-
T Consensus 328 l~~dy~~am~gv~~~Llr~S~P-------~~~~fiGEl~~G~~fsPKMDHLVCFlpGt-L~lG~~~Gl~~~~~hl~lA~~ 399 (546)
T KOG2431|consen 328 LRDDYIEAMEGVRKHLLRQSKP-------NKLWFIGELPHGLQFSPKMDHLVCFLPGT-LALGSTNGLPASEEHLELAQE 399 (546)
T ss_pred HHHHHHHHHHHHHHHHHhcCCC-------cceEEEEecccccccCcccceEEEeecch-hhhccccCCCcchHHHHHHHH
Confidence 22344444444433211 122221 11221221 111112223456789999998
Q ss_pred cccccc---------chhhhh---------cCCCC---CCCcccCccc-cchHHHHHHHHhCChHHHHHHHHHHHHhhcc
Q 005721 137 FDKPCF---------LGLLAL---------QADDI---SGFHSNTHIP-IVIGSQMRYEVTGDQLHKTISMFFMDIVNSS 194 (681)
Q Consensus 137 f~~~~~---------~~~l~~---------~~D~l---~g~HanthiP-~~~G~a~~Y~~TGd~~y~~aa~~f~d~v~~~ 194 (681)
+-+.|+ +.|+.. ..|.. ...| |-.-| .+.....+|++|||+.|++..-..++...++
T Consensus 400 l~~TCyqMY~~~~TGLaPEIv~Fn~~~~~~~~DiyvKp~D~H-nLlRPEtVESlfylYriT~D~kYqewGW~if~sfeky 478 (546)
T KOG2431|consen 400 LMETCYQMYRQNPTGLAPEIVHFNLYPQPGKNDIYVKPLDRH-NLLRPETVESLFYLYRITGDRKYQEWGWEIFQSFEKY 478 (546)
T ss_pred HHHHHHHHHccCcCCCCceEEEEeccCCCccCceeeccchhh-cccChHHHhhhheeeEecCCchHHHHhHHHHHHHHHh
Confidence 754433 222210 11110 0112 22233 2455677799999999998766666666555
Q ss_pred ceeeecCCCC
Q 005721 195 HTYATGGTSV 204 (681)
Q Consensus 195 h~y~tGG~s~ 204 (681)
--..+||.++
T Consensus 479 trv~~ggytS 488 (546)
T KOG2431|consen 479 TRVPSGGYTS 488 (546)
T ss_pred cccCCCCccc
Confidence 5567788876
No 41
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=77.92 E-value=9.8 Score=43.76 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=27.6
Q ss_pred cCCchHHHHHHHHHHHHHHHhhhhCCCceeeccC
Q 005721 4 STHNESLKEKMSAVVSALSACQKEIGSGYLSAFP 37 (681)
Q Consensus 4 ~t~D~~L~~k~~~~V~~l~~~Q~~~~dGYl~~~~ 37 (681)
-|||+.+++-+.+.++.|-+-.- +-|-+|..-
T Consensus 211 LTGD~~fE~vA~~A~~~lW~~RS--~igLlGn~i 242 (622)
T KOG2429|consen 211 LTGDPKFEKVARRALDALWSLRS--GIGLLGNHI 242 (622)
T ss_pred hhCCcHHHHHHHHHHHHHHhhcC--CCCccccee
Confidence 48999999999999999999888 778777653
No 42
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=75.37 E-value=11 Score=40.41 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=69.5
Q ss_pred ccCCchHHHHHHHHHHHHHHHhhhhCCCceeeccCCchhhhhhccCCCcccccchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005721 3 ASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTW 82 (681)
Q Consensus 3 a~t~D~~L~~k~~~~V~~l~~~Q~~~~dGYl~~~~~~~~~~~~~~~~~W~pyy~~HkI~aGLld~y~~tG~~~aL~va~~ 82 (681)
..++++++++.+..+++.+.+.+.....+|......+. ... ...|--=-.+ |...++..+...+++...+.+..
T Consensus 182 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~WC~G~~G--i~~~~~~~~~~~~~~~~~~~~~~ 255 (355)
T PF05147_consen 182 KGTKDPEYLKLIEQILNFLLKHFNTDDGGWPDNRNNSN---YKS-RPSWCYGSPG--ILLALLKAYKILDDEEYDEEAEQ 255 (355)
T ss_dssp HT--HHHHHHCHHHHHHHHHHC--TGCCT--SECTHHH---HHC---SSSSSHHH--HHHHHHHHHHHCT-HHHHHHHHH
T ss_pred cccCchhHHHHHHHHHHHHHHhcCcccCCCCCCCCccc---ccc-ccccccCcHH--HHHHHHHHHHhhchHHHHHHHHH
Confidence 37889999999999999999999644566543322111 100 1222111112 55555677888889888888888
Q ss_pred HHHHHHHHhhhhhhccccccccccccccccchHHHHHHHHHhcCCHHHHHHHhhcc
Q 005721 83 MVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFD 138 (681)
Q Consensus 83 ~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~~yL~lA~~f~ 138 (681)
....+.++-. ... . ...-|+- .|+-+.|..+|+.|++++|.+.|+.+.
T Consensus 256 ~~~~~~~~~~-----~~~-~-~~lCHG~-aG~~~~l~~~~~~~~~~~~~~~~~~~~ 303 (355)
T PF05147_consen 256 ALESILQKGL-----FLN-N-PSLCHGT-AGILEILLDLYKYTGDEEYKELANKLI 303 (355)
T ss_dssp HHHHHHHH-T-----CTT-S-S-STTSH-HHHHHHHHHHHHHH--HCCHHHHHHHH
T ss_pred HHHHHHHccc-----cCC-C-CceeCch-HHhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777654210 000 0 0011222 267789999999999999999998873
No 43
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=74.24 E-value=24 Score=38.88 Aligned_cols=132 Identities=10% Similarity=0.034 Sum_probs=73.9
Q ss_pred cccC-CchHHHHHHHHHHHHHHHhhhhCCCc-eeec-cCCc-hhhhhh-ccCCCcccccchH-HHHHHHHHHHHHcCCHH
Q 005721 2 WAST-HNESLKEKMSAVVSALSACQKEIGSG-YLSA-FPTE-QFDRLE-ALIPVWAPYYTIH-KILAGLLDQYTYADNAE 75 (681)
Q Consensus 2 ya~t-~D~~L~~k~~~~V~~l~~~Q~~~~dG-Yl~~-~~~~-~~~~~~-~~~~~W~pyy~~H-kI~aGLld~y~~tG~~~ 75 (681)
|..+ +++..++.+.+.++.+.+.+.....| |... ++.. ....-. .......-||.+- -|...++..++.+++++
T Consensus 185 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~ 264 (382)
T cd04793 185 KERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPGIARALQLAGKALDDQK 264 (382)
T ss_pred HHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCHH
Confidence 3445 78888999999999888877533332 1111 1100 000000 0000011122211 15666677888999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccccccccccccccccchHHHHHHHHHhcCCHHHHHHHhhcc
Q 005721 76 ALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFD 138 (681)
Q Consensus 76 aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~~yL~lA~~f~ 138 (681)
.++.+.+...-+.++.... .....+. .-|+-. |+-+.|.++|+.|+|+++++.|+++.
T Consensus 265 ~~~~a~~~~~~~~~~~~~~---~~~~~~~-lChG~~-G~~~~l~~~~~~~~~~~~~~~a~~~~ 322 (382)
T cd04793 265 LQEAAEKILKAALKDKKQL---SKLISPT-LCHGLA-GLLFIFYLLYKDTNTNEFKSALEYLL 322 (382)
T ss_pred HHHHHHHHHHHHHhChhhh---ccCCCCC-cCccHH-HHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 9998888766554332111 0000111 112211 67799999999999999999998763
No 44
>PLN02909 Endoglucanase
Probab=74.01 E-value=30 Score=39.82 Aligned_cols=121 Identities=11% Similarity=0.043 Sum_probs=64.5
Q ss_pred CchHHHHHHHHHHHHHHHhhhhCCCceeec-cCC-----chhhhhhccCCCcccccc----------hHHHHHHHHHHHH
Q 005721 6 HNESLKEKMSAVVSALSACQKEIGSGYLSA-FPT-----EQFDRLEALIPVWAPYYT----------IHKILAGLLDQYT 69 (681)
Q Consensus 6 ~D~~L~~k~~~~V~~l~~~Q~~~~dGYl~~-~~~-----~~~~~~~~~~~~W~pyy~----------~HkI~aGLld~y~ 69 (681)
+-+.+++.++.-.|+|++||. .+|-+-. .-. ..+.+=|.... --|.|. --.+-++|-.+++
T Consensus 118 ~~~d~ldeikw~~D~llk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~~-~R~~~~i~~~~pgtd~a~~~AAAlA~as~ 194 (486)
T PLN02909 118 ELENVRAAIRWGTDYFLKAAS--RKNRLYVQVGDPNLDHQCWVRPENMKT-PRTVLEIDEKTPGTEIAAETAAAMAASSM 194 (486)
T ss_pred ChHHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCcccCCChhhccC-CceeEecCCCCCCcHHHHHHHHHHHHHHH
Confidence 457899999999999999998 5553321 000 01111111110 001121 1223344444455
Q ss_pred HcCC------HHHHHHHHHHHHHHHHHhhhhhhccccc-ccc---ccccccccchHHHHHHHHHhcCCHHHHHHHhh
Q 005721 70 YADN------AEALRMTTWMVEYFYNRVQNVIKKYSIE-RHW---QTLNEEAGGMNDVLYKLFCITQDPKHLMLAHL 136 (681)
Q Consensus 70 ~tG~------~~aL~va~~~ad~~~~~~~~~~~~~~~~-~~~---~~l~~E~GGmne~L~~LY~~TGd~~yL~lA~~ 136 (681)
.-.+ ++.|+.|+++-+|..+.- .. +... ... .....| +..+-+|||+.|||++||+.++.
T Consensus 195 vfk~~D~~yA~~lL~~Ak~~y~fA~~~~-g~---y~~~~~~y~s~s~y~DE---l~WAAawLy~aTgd~~Yl~~~~~ 264 (486)
T PLN02909 195 VFRHVDHKYSRRLLNKAKLLFKFAKAHK-GT---YDGECPFYCSYSGYNDE---LLWAATWLYKATKKQMYLKYIKH 264 (486)
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHhCC-CC---cCCCCCccccCCCcchH---HHHHHHHHHHHhCCHHHHHHHHh
Confidence 4332 367888888888886531 11 1100 000 001123 44677899999999999997664
No 45
>PF15095 IL33: Interleukin 33; PDB: 2KLL_A.
Probab=73.19 E-value=31 Score=35.40 Aligned_cols=89 Identities=17% Similarity=0.222 Sum_probs=48.6
Q ss_pred cccceEEEEEecCCCCCCcccccCCCCcccc--cCCCCCCCceEEeecCCcceEEecCCCCCCcceEEEeeccCCCCCeE
Q 005721 517 AALHATFRLILNDSSGSEFSSLNDFIGKSVM--LEPFDSPGMLVIQHETDDELVVTDSFIAQGSSVFHLVAGLDGGDRTV 594 (681)
Q Consensus 517 ~~~~~~~r~~~~~~~~~~~~~p~~~~g~~v~--lepfd~Pg~~v~~~~~~~~l~v~~~~~~~~~s~f~~vpgl~g~~~~v 594 (681)
.-=-..||.......++.. --+.+|+.+| |.|-....-.+--...+-++.+.---...+|..|.+.--- ....|
T Consensus 156 EKDKVLlryYeSq~pS~es--gdgvDGk~LMVnlSPtkdkDf~LHAN~keHSVeLqKcE~~lpdQaff~lh~~--ss~~v 231 (268)
T PF15095_consen 156 EKDKVLLRYYESQCPSSES--GDGVDGKKLMVNLSPTKDKDFLLHANNKEHSVELQKCENPLPDQAFFVLHKK--SSECV 231 (268)
T ss_dssp ----EEEEEEE----TTTS------S---EEEEEESS--SSEEEEEETTTTEEEEEE--SS--TTT-EEEEE---SSS-E
T ss_pred ccceEEEEeccCCCCcccC--CCCccceEEEEEcCCccchheEEecCCccceeeeeecCCCCCcceeEEEecC--CCcee
Confidence 3445678866554333222 2235788877 9999888887777666666766555556888888887433 35899
Q ss_pred EEeecCCcceEEEEe
Q 005721 595 SLESETYKGCFVYTA 609 (681)
Q Consensus 595 sle~~~~pg~~~~~~ 609 (681)
|||-.|+||.|+-+-
T Consensus 232 sfeck~~pg~~igvk 246 (268)
T PF15095_consen 232 SFECKNNPGVFIGVK 246 (268)
T ss_dssp EEEESSSTTEEEEES
T ss_pred EEEecCCCceEEeee
Confidence 999999999999874
No 46
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=72.49 E-value=42 Score=40.96 Aligned_cols=155 Identities=18% Similarity=0.156 Sum_probs=83.4
Q ss_pred cCCchHHHHHHHHHHHHHHHhhh-hCCCceeeccCCchhhhhhccCCCcccccchHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005721 4 STHNESLKEKMSAVVSALSACQK-EIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTW 82 (681)
Q Consensus 4 ~t~D~~L~~k~~~~V~~l~~~Q~-~~~dGYl~~~~~~~~~~~~~~~~~W~pyy~~HkI~aGLld~y~~tG~~~aL~va~~ 82 (681)
+||...+++.+.+++..+.+.=+ ++.+==++++. +.=. ++-+|.--|.++++..+..=+.+
T Consensus 662 vtgk~~Y~~ia~~~L~~~~~sv~~~~~~~~iga~~-----------G~~g-------~~yal~~I~~~~~~~~l~~~~~~ 723 (963)
T COG4403 662 VTGKDYYKEIAIKALQDSRKSVNNNLNPINIGAFT-----------GLSG-------YFYALWKIYSVTRDNYLIQSAEN 723 (963)
T ss_pred hcChHHHHHHHHHHHHHHHHhhhhccCCccccccc-----------ccch-------hhhhhHHHHHhcccHHHHHHHHH
Confidence 58888889888887777766533 21111111211 1101 22334445777888877766666
Q ss_pred HHHHHHHHhhhhhhccccccccccccccccchHHHHHHHHHhcCCHHHHHHHhhccccccchhhhhcCCCCC-CCcccCc
Q 005721 83 MVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDIS-GFHSNTH 161 (681)
Q Consensus 83 ~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY~~TGd~~yL~lA~~f~~~~~~~~l~~~~D~l~-g~Hanth 161 (681)
.+..+...... + +-...+++-. |..-+|+.+|+.|.+||.|++|.-..+...-. ....|... -...-.|
T Consensus 724 ~i~~le~~v~~-----~--~~~d~i~Gl~-g~i~~L~~iYk~~~epk~l~~ais~~~~l~~~--~v~~d~s~~~l~gfsh 793 (963)
T COG4403 724 SIRHLEILVQK-----S--KDPDFINGLA-GVICVLVSIYKLTDEPKFLELAISLGRILMEK--IVGNDSSETVLLGFSH 793 (963)
T ss_pred HHHHHHHHHhh-----c--cCcchhhccH-HHHHHHHHHHhhccchHHHHHHHHHHHHHHHH--hhccccccceeccccc
Confidence 66644432211 0 0011122221 34578999999999999999997653322211 11122210 0111233
Q ss_pred cc--cchHHHHHHHHhCChHHHHHHHH
Q 005721 162 IP--IVIGSQMRYEVTGDQLHKTISMF 186 (681)
Q Consensus 162 iP--~~~G~a~~Y~~TGd~~y~~aa~~ 186 (681)
.. ++...+.+|++|||+.+++..+.
T Consensus 794 g~sgi~~tL~~ly~~T~e~~l~~~i~e 820 (963)
T COG4403 794 GASGIILTLLKLYEATGEESLLKKIKE 820 (963)
T ss_pred chHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 33 23446778999999999876653
No 47
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=71.93 E-value=11 Score=43.72 Aligned_cols=94 Identities=19% Similarity=0.146 Sum_probs=54.7
Q ss_pred CccccchHHHHHHHHhCChHHHHHHHHHHHHhhccceeeecCCCCCCCCCCCcccccCCCCCcccchhh-HHHHHH-HHH
Q 005721 160 THIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTT-YNMLKV-SRH 237 (681)
Q Consensus 160 thiP~~~G~a~~Y~~TGd~~y~~aa~~f~d~v~~~h~y~tGG~s~~E~f~~p~~l~~~l~~~~~EtCas-~nmlkl-~~~ 237 (681)
+.|-++=|..-.|.+|||+.|++.|...-+.+..---..||.--..-.+... ....-......+|.+ .+.|.+ ..+
T Consensus 156 ttIR~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g--~~~~~~~~~~~~~lAe~gSl~LEF~~ 233 (522)
T PTZ00470 156 TTIRVLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATG--RKSYPGWAGGCSILSEVGTLQLEFNY 233 (522)
T ss_pred eehhhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccC--CCCCcccCCCccchhhhhhHHHHHHH
Confidence 3444556788899999999999999988888764332344432221111110 000000012222322 222222 345
Q ss_pred HhcccCCchhHHHHHHHH
Q 005721 238 LFRWTKEIAYADYYERSL 255 (681)
Q Consensus 238 Lf~~tgd~~YaD~~Eral 255 (681)
|-++|||++|.+..+|+.
T Consensus 234 LS~lTGd~kY~~~a~~i~ 251 (522)
T PTZ00470 234 LSEITGDPKYAEYVDKVM 251 (522)
T ss_pred HHHhhCCHHHHHHHHHHH
Confidence 999999999999999986
No 48
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=71.74 E-value=54 Score=37.99 Aligned_cols=33 Identities=9% Similarity=0.142 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhh
Q 005721 60 ILAGLLDQYTYADNA-EALRMTTWMVEYFYNRVQ 92 (681)
Q Consensus 60 I~aGLld~y~~tG~~-~aL~va~~~ad~~~~~~~ 92 (681)
+..||.-++...+-+ +.++-+...++++-+.+-
T Consensus 510 viSgl~kag~~~~a~~~y~~~a~~~a~fl~k~m~ 543 (786)
T KOG2244|consen 510 VISGLAKAGKILKAEPEYTKYAFPVANFLPKDMI 543 (786)
T ss_pred hhHHHHHHHHHhhcCHHHHHHHHHHHhhhhhhhh
Confidence 567887777766654 899999999998876443
No 49
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=71.26 E-value=12 Score=41.85 Aligned_cols=81 Identities=20% Similarity=0.254 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhh--hhcccc--------ccccc--cccccccchHHHHHHHHHhcC
Q 005721 59 KILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNV--IKKYSI--------ERHWQ--TLNEEAGGMNDVLYKLFCITQ 126 (681)
Q Consensus 59 kI~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~--~~~~~~--------~~~~~--~l~~E~GGmne~L~~LY~~TG 126 (681)
.|+-|||.+|.++|++-.|+.|+.++|-+..-|+.- ++--+. .-+|. ....|.-.+.+-+-.|-++||
T Consensus 179 RvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IPysdVnL~~~~A~~p~~~~~SStaEvttiQlEfr~Ls~ltg 258 (546)
T KOG2431|consen 179 RVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIPYSDVNLGTGTAHPPRWTGDSSTAEVTTIQLEFRYLSRLTG 258 (546)
T ss_pred HHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCCcceeecCCCcccCCCCCCccchhhheeeeeeHHHHHhhcC
Confidence 378999999999999999999999999888766421 111000 11231 111233233345677899999
Q ss_pred CHHHHHHHhhccc
Q 005721 127 DPKHLMLAHLFDK 139 (681)
Q Consensus 127 d~~yL~lA~~f~~ 139 (681)
|++|-++|.+..+
T Consensus 259 d~kY~~~a~kv~e 271 (546)
T KOG2431|consen 259 DPKYEELAEKVTE 271 (546)
T ss_pred CchHHHHHHHHHH
Confidence 9999999988643
No 50
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=69.54 E-value=98 Score=34.59 Aligned_cols=193 Identities=16% Similarity=0.131 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhhccccccccccccccccchHHHHHHHH------------HhcCCHHHHHHHhh---c
Q 005721 73 NAEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYKLF------------CITQDPKHLMLAHL---F 137 (681)
Q Consensus 73 ~~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GGmne~L~~LY------------~~TGd~~yL~lA~~---f 137 (681)
...+++++.-=.+|+.+.... .... |...-..-|++.+.=.++| ..+|.++-.++... +
T Consensus 73 ~~~~~~~v~hG~~y~~~~~R~-----~~gg-~~~~~~~dg~~~Dat~d~Y~haFallA~A~~a~a~~~~a~~~~~~a~~~ 146 (388)
T COG2942 73 RGPWLDAVAHGIAYLARVGRD-----PEGG-WYFALDNDGGPVDATKDLYGHAFALLAAAHAATAGPPRADELLDEALDV 146 (388)
T ss_pred CccHHHHHHhHHHHHHhcCcC-----CCCC-eEEEecCCCCcccccHhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Confidence 445899998888888643221 1112 2222223344433333333 34677765544332 2
Q ss_pred cccccchh---hh---hcCCCCCCCcccCccccchHHHHHHHHhCChHHHHHHHHHHHHhhccceeeecCCC-CCCCCCC
Q 005721 138 DKPCFLGL---LA---LQADDISGFHSNTHIPIVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTS-VGEFWSD 210 (681)
Q Consensus 138 ~~~~~~~~---l~---~~~D~l~g~HanthiP~~~G~a~~Y~~TGd~~y~~aa~~f~d~v~~~h~y~tGG~s-~~E~f~~ 210 (681)
.++.|.+. +. ...+.-.-+-+|.|.-++..+...|++||++.|++.+...-+.+.. +. +-+..+ ..|+|..
T Consensus 147 l~~~~~~~~~pl~~~e~~~~~~~pl~sNp~MHl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~-rf-~d~~~g~v~E~fd~ 224 (388)
T COG2942 147 LERRFWREEHPLGGFEEDNPGSAPLGSNPHMHLLEAMLAAYEATGEKTWLDRADRIADLIIS-RF-ADAESGLVREHFDH 224 (388)
T ss_pred HHHHHhhhcCCcccccccCCCCCccCCCcchHHHHHHHHHHhccCchhHHHHHHHHHHHHHH-Hh-hhcccCcHhhhccc
Confidence 22222211 11 1111111224577777888899999999999999888777777763 33 233333 3688755
Q ss_pred CcccccCCCCCcccchhhHHHHHHHHHHhcccCCchhHHHHHHHHhhhcccccCCCCCCeEEEe
Q 005721 211 PKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYL 274 (681)
Q Consensus 211 p~~l~~~l~~~~~EtCas~nmlkl~~~Lf~~tgd~~YaD~~EralyN~ila~q~~~~~g~~~Y~ 274 (681)
+-.-.....-...|-=--.++++|...+-+.-++....+..=|..-|++--+-++ +.|.++|-
T Consensus 225 dW~p~~~frg~~~ePGH~fEW~~Lll~~a~~~~~~~l~~~A~~lf~~a~~~g~d~-~~gg~~~s 287 (388)
T COG2942 225 DWNPAHGFRGRGIEPGHQFEWAWLLLDIARRRGRAWLIEAARRLFDIAVADGWDP-ERGGAYYS 287 (388)
T ss_pred cCCcCCCcccCCCCCchHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHhccCc-ccCeEEEE
Confidence 4321111123466777788999999999999999888888888888888777776 66766654
No 51
>PLN02266 endoglucanase
Probab=67.06 E-value=49 Score=38.37 Aligned_cols=127 Identities=9% Similarity=-0.005 Sum_probs=64.4
Q ss_pred CchHHHHHHHHHHHHHHHhhhhCCCceeec-cCCc-----hhhhhhccCCCcccccc------h----HHHHHHHHHHHH
Q 005721 6 HNESLKEKMSAVVSALSACQKEIGSGYLSA-FPTE-----QFDRLEALIPVWAPYYT------I----HKILAGLLDQYT 69 (681)
Q Consensus 6 ~D~~L~~k~~~~V~~l~~~Q~~~~dGYl~~-~~~~-----~~~~~~~~~~~W~pyy~------~----HkI~aGLld~y~ 69 (681)
.-+.+++.++.-.|+|++||. .+|-+-. .-+. .|.+=|.... --|.|. + -.+-|+|-.+++
T Consensus 128 ~~pd~Ldelkw~~D~llk~~~--~~~~vy~qVg~~~~Dh~~W~~Pe~~~~-~R~~y~i~~~~pgsd~a~e~AAALAaas~ 204 (510)
T PLN02266 128 ELQNAKDAIRWATDYLLKATA--HPDTIYVQVGDANKDHACWERPEDMDT-PRSVFKVDKNTPGSDVAAETAAALAAASL 204 (510)
T ss_pred ccHHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCcccCCChhhcCC-CCeeEEeCCCCCchHHHHHHHHHHHHHHH
Confidence 357889999999999999997 4443211 1000 1111111100 001121 1 112344444455
Q ss_pred HcCC------HHHHHHHHHHHHHHHHHhhhhhhccccccccccccccccc----hHHHHHHHHHhcCCHHHHHHHhhc
Q 005721 70 YADN------AEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGG----MNDVLYKLFCITQDPKHLMLAHLF 137 (681)
Q Consensus 70 ~tG~------~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GG----mne~L~~LY~~TGd~~yL~lA~~f 137 (681)
.-.+ ++.|+.|+++-+|..+.-+.. .. .+.......-...+| +..+-+|||..|||+.||+.++..
T Consensus 205 vfk~~D~~yA~~~L~~Ak~ly~fa~~~~g~y-~~-~~~~~~~~~y~s~s~~~DEl~WAAawLy~ATGd~~Yl~~~~~~ 280 (510)
T PLN02266 205 VFRKSDPTYSKLLVRRAIRVFQFADKYRGAY-SN-GLKPDVCPFYCSYSGYQDELLWGAAWLHKATKNPTYLNYIQVN 280 (510)
T ss_pred HhccCCHHHHHHHHHHHHHHHHHHHhCCCCc-cC-CCCcccCCCcccCCcchHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4332 467888888888886531110 00 000000001111122 235778999999999999987653
No 52
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=66.55 E-value=19 Score=39.06 Aligned_cols=107 Identities=20% Similarity=0.145 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHHHHHH-hh--hhhhccc----ccccccccccccc--chHHHHHHHHHhcCCHHHHHHHhhcc----c
Q 005721 73 NAEALRMTTWMVEYFYNR-VQ--NVIKKYS----IERHWQTLNEEAG--GMNDVLYKLFCITQDPKHLMLAHLFD----K 139 (681)
Q Consensus 73 ~~~aL~va~~~ad~~~~~-~~--~~~~~~~----~~~~~~~l~~E~G--Gmne~L~~LY~~TGd~~yL~lA~~f~----~ 139 (681)
.+..++.+++-.||+.+. +. +.....+ .=-|| -+| |+...|.+.|++=++++||+-|..-. +
T Consensus 240 ~~~~~~dVK~sldym~~~rfpsGNyP~s~~~~~drLVhW-----cHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~ 314 (403)
T KOG2787|consen 240 QPALLKDVKGSLDYMIQNRFPSGNYPSSEGNKRDRLVHW-----CHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVWK 314 (403)
T ss_pred chhHHHhhhhHHHHHHHccCCCCCCCcccCCCcceeeee-----ccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 334578889999999853 32 1111111 11245 244 79999999999999999998776532 2
Q ss_pred cccchhhhhcCCCCCCCcccCcccc--chHHHHHHHHhCChHHHHHHHHHHHHhhcc
Q 005721 140 PCFLGLLALQADDISGFHSNTHIPI--VIGSQMRYEVTGDQLHKTISMFFMDIVNSS 194 (681)
Q Consensus 140 ~~~~~~l~~~~D~l~g~HanthiP~--~~G~a~~Y~~TGd~~y~~aa~~f~d~v~~~ 194 (681)
..++. .+ .| --|..- ..-+.-+|++|||.+|+-.|..|.+.+.++
T Consensus 315 rGlLk---kg----~G---ichGvaGNaYvFLsLyRLT~d~kYlyRA~kFae~lld~ 361 (403)
T KOG2787|consen 315 RGLLK---KG----VG---ICHGVAGNAYVFLSLYRLTGDMKYLYRAKKFAEWLLDY 361 (403)
T ss_pred hhhhh---cC----Cc---ccccccCchhhhHhHHHHcCcHHHHHHHHHHHHHHHhh
Confidence 22221 11 01 112221 122677899999999999999999998753
No 53
>PLN02175 endoglucanase
Probab=65.48 E-value=37 Score=39.08 Aligned_cols=105 Identities=11% Similarity=-0.059 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccccccccccccch----HHHHHHHHHhcCCHHHHHHHhhccccccchhhhhc
Q 005721 74 AEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGM----NDVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQ 149 (681)
Q Consensus 74 ~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GGm----ne~L~~LY~~TGd~~yL~lA~~f~~~~~~~~l~~~ 149 (681)
++.|+.|+++-+|..+.-+....... ......-...+|. ..+-+|||..|||++||+.++.+.....
T Consensus 194 ~~lL~~Ak~ly~fA~~~~g~y~~~~~--~~~~~~Y~s~s~y~DEl~WAAawLY~ATgd~~Yl~~~~~~~~~~~------- 264 (484)
T PLN02175 194 RLLLATAKKVMQFAIQYRGAYSDSLS--SSVCPFYCSYSGYKDELMWGASWLLRATNDPYYANFIKSLGGGDQ------- 264 (484)
T ss_pred HHHHHHHHHHHHHHHhCCCCcccCcc--ccccCccccCCCccHHHHHHHHHHHHHhCCHHHHHHHHHcCCCCC-------
Confidence 36788888988888753221100000 0000001111232 3577799999999999998765421100
Q ss_pred CCCCCCCcccCccccchHHHHH-HHH------hCChHHHHHHHHHHHHhhc
Q 005721 150 ADDISGFHSNTHIPIVIGSQMR-YEV------TGDQLHKTISMFFMDIVNS 193 (681)
Q Consensus 150 ~D~l~g~HanthiP~~~G~a~~-Y~~------TGd~~y~~aa~~f~d~v~~ 193 (681)
.+... .. -+..|.+++ +++ ++.+.|++.+.+|+.....
T Consensus 265 ~~~~~---Wd---~k~~g~~vLla~~~~~~~~~~~~~y~~~~~~~~~~~~~ 309 (484)
T PLN02175 265 PDIFS---WD---NKYAGAYVLLSRRALLNKDSNFEQYKQAAENFICKILP 309 (484)
T ss_pred CCccC---Cc---CHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHhccC
Confidence 00010 00 133454443 332 3446899999999887653
No 54
>PLN02340 endoglucanase
Probab=65.17 E-value=55 Score=38.85 Aligned_cols=127 Identities=9% Similarity=-0.046 Sum_probs=65.5
Q ss_pred CchHHHHHHHHHHHHHHHhhhhCCCceeec------cCCchhhhhhccC---CCcc-----ccc-chHHHHHHHHHHHHH
Q 005721 6 HNESLKEKMSAVVSALSACQKEIGSGYLSA------FPTEQFDRLEALI---PVWA-----PYY-TIHKILAGLLDQYTY 70 (681)
Q Consensus 6 ~D~~L~~k~~~~V~~l~~~Q~~~~dGYl~~------~~~~~~~~~~~~~---~~W~-----pyy-~~HkI~aGLld~y~~ 70 (681)
+-+.+++.++.-.|+|++||. .++-|-. .....|.+=|... ..+. |=- .--.+-|+|-.+++.
T Consensus 114 ~~~~~ldeirw~~Dyllk~~~--~~~~~~~qVGdg~~DH~~W~~PE~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaas~v 191 (614)
T PLN02340 114 QMQRTLWAIRWGTDYFIKAHT--QPNVLWGQVGDGDSDHYCWERAEDMTTPRTAYKLDQNHPGSDLAGETAAALAAASKA 191 (614)
T ss_pred ChHHHHHHHHHHHHHHHHhcC--CCCeEEEEeCCCCcccccCCChhhcCCcCceeecCCCCCccHHHHHHHHHHHHHHHh
Confidence 457889999999999999987 4332211 0111222212111 1110 100 001233444444444
Q ss_pred cC------CHHHHHHHHHHHHHHHHHhhhhhhccccc-ccccc--ccccccchHHHHHHHHHhcCCHHHHHHHhhc
Q 005721 71 AD------NAEALRMTTWMVEYFYNRVQNVIKKYSIE-RHWQT--LNEEAGGMNDVLYKLFCITQDPKHLMLAHLF 137 (681)
Q Consensus 71 tG------~~~aL~va~~~ad~~~~~~~~~~~~~~~~-~~~~~--l~~E~GGmne~L~~LY~~TGd~~yL~lA~~f 137 (681)
-. .++.|+.|+++-+|..+.-+..-...... ..... ...| +..+-+|||+.|||+.||+.+...
T Consensus 192 fk~~D~~YA~~lL~~Ak~ly~fA~~~~g~y~~s~~~a~~~Y~ss~~~DE---l~WAAawLy~ATgd~~Yl~~~~~~ 264 (614)
T PLN02340 192 FKPYNSSYSDLLLVHAKQLFSFADKFRGLYDDSIQNAKKFYTSSGYSDE---LLWAAAWLYRATGDEYYLKYVVDN 264 (614)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhCCCCccCCCCccccCCCCCCcchH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 32 24678888888888865322110000000 00000 1123 346778999999999999988754
No 55
>PLN02613 endoglucanase
Probab=64.23 E-value=57 Score=37.78 Aligned_cols=123 Identities=13% Similarity=0.082 Sum_probs=63.6
Q ss_pred CCchHHHHHHHHHHHHHHHhhhh-------CCCceeeccCCchhhhhhc---cCCCcc-----cccc-hHHHHHHHHHHH
Q 005721 5 THNESLKEKMSAVVSALSACQKE-------IGSGYLSAFPTEQFDRLEA---LIPVWA-----PYYT-IHKILAGLLDQY 68 (681)
Q Consensus 5 t~D~~L~~k~~~~V~~l~~~Q~~-------~~dGYl~~~~~~~~~~~~~---~~~~W~-----pyy~-~HkI~aGLld~y 68 (681)
.+.+.+++.++.-.|+|++||.. .+||-.. ...|.+=|. .+.... |--. .-..-++|-.++
T Consensus 109 ~~~~d~ldeikw~lD~llkm~~~~~~~~~QVGdg~~d---H~~W~~Pe~~~~~R~~~~~t~~~pgTd~a~~~AAALAaas 185 (498)
T PLN02613 109 NQLGYLRSAIRWGTDFILRAHTSPTTLYTQVGDGNAD---HQCWERPEDMDTPRTLYKITSSSPGSEAAGEAAAALAAAS 185 (498)
T ss_pred CCchHHHHHHHHHHHHHHHhccCCCeEEEEeCCCCcc---ccccCCccccCCCCeeEecCCCCCccHHHHHHHHHHHHHH
Confidence 34688999999999999999862 1333210 011111111 111111 1100 111333443445
Q ss_pred HHcCC------HHHHHHHHHHHHHHHHHhhhhhhccccccccccccccccc----hHHHHHHHHHhcCCHHHHHHHhhc
Q 005721 69 TYADN------AEALRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGG----MNDVLYKLFCITQDPKHLMLAHLF 137 (681)
Q Consensus 69 ~~tG~------~~aL~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GG----mne~L~~LY~~TGd~~yL~lA~~f 137 (681)
+.-.+ ++.|+.|+++-+|..+.-+. +... ...-...+| +..+-+|||..|||+.||+.++..
T Consensus 186 ~vfk~~D~~yA~~~L~~Ak~ly~~a~~~~g~----y~~~---~~~y~s~s~~~DEl~WAAawLy~aTGd~~Yl~~~~~~ 257 (498)
T PLN02613 186 LVFKDVDSSYSSKLLNHARSLFEFADKYRGS----YQAS---CPFYCSYSGYQDELLWAAAWLYKATGEKKYLNYVISN 257 (498)
T ss_pred HhcccCCHHHHHHHHHHHHHHHHHHHhCCCC----cCCC---CCcccccCccchHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 54332 46788888888888653111 1100 000011112 345778999999999999987643
No 56
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=63.92 E-value=7.2 Score=41.76 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHhcccCCchhHHHHHHHHhhhcccccCCCCCCeEEEecCCCC
Q 005721 227 TTYNMLKVSRHLFRWTKEIAYADYYERSLTNGVLGIQRGTEPGVMIYLLPLAP 279 (681)
Q Consensus 227 as~nmlkl~~~Lf~~tgd~~YaD~~EralyN~ila~q~~~~~g~~~Y~~pl~~ 279 (681)
+|+.-|++.-++++.++|++|-|.++|++ |-||+.|++ ++|.-.|+ |++.
T Consensus 45 aT~~e~~fLa~~y~~t~d~~y~~A~~rgl-d~LL~aQyp-nGGWPQf~-p~~~ 94 (290)
T TIGR02474 45 ATVTEIRYLAQVYQQEKNAKYRDAARKGI-EYLLKAQYP-NGGWPQFY-PLKG 94 (290)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHHHHH-HHHHhhhCC-CCCcCccc-CCcC
Confidence 45556666677999999999999999998 889999997 65544443 6654
No 57
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=63.02 E-value=48 Score=38.45 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=30.4
Q ss_pred cchHHHHHHHHhCChHHHHHHHHHHHHhhccceeeecCCCC
Q 005721 164 IVIGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSV 204 (681)
Q Consensus 164 ~~~G~a~~Y~~TGd~~y~~aa~~f~d~v~~~h~y~tGG~s~ 204 (681)
++.+..-+|++|||+.|++..-.-...+. ++--+.+|.++
T Consensus 532 viEs~fYlwRlT~d~kyR~wgweavqale-k~cr~~~G~~g 571 (625)
T KOG2204|consen 532 VIESYFYLWRLTGDQKYRSWGWEAVQALE-KYCRVAKGYSG 571 (625)
T ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHHH-Hhcccccchhh
Confidence 45778889999999999998776666665 45556667665
No 58
>PLN00119 endoglucanase
Probab=62.39 E-value=59 Score=37.58 Aligned_cols=125 Identities=10% Similarity=-0.037 Sum_probs=63.6
Q ss_pred chHHHHHHHHHHHHHHHhhhhCCCceeec-c-----CCchhhhhhcc---CCCcc-----cc-cchHHHHHHHHHHHHHc
Q 005721 7 NESLKEKMSAVVSALSACQKEIGSGYLSA-F-----PTEQFDRLEAL---IPVWA-----PY-YTIHKILAGLLDQYTYA 71 (681)
Q Consensus 7 D~~L~~k~~~~V~~l~~~Q~~~~dGYl~~-~-----~~~~~~~~~~~---~~~W~-----py-y~~HkI~aGLld~y~~t 71 (681)
-+.+++.++.-.|+|++||. .+|.|-. . ....|.+=|.. +..+. |= -..-.+-++|-.++..-
T Consensus 116 ~~~~lde~kw~~Dyllk~~~--~~~~~y~qVgdg~~DH~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~~~AAAlA~as~vf 193 (489)
T PLN00119 116 LGNALAALKWATDYLIKAHP--QPNVLYGQVGDGNSDHACWMRPEDMTTPRTSYRIDAQHPGSDLAGETAAAMAAASIAF 193 (489)
T ss_pred cHHHHHHHHHHHHHHHHhcC--CCCeEEEEeccCCCcccccCChhhCCCcCceeecCCCCCchHHHHHHHHHHHHHHHHc
Confidence 45688999999999999997 4443321 0 00111111111 11100 10 01122334443444443
Q ss_pred CC------HHHHHHHHHHHHHHHHHhhhhhhc-cccccccc-c--ccccccchHHHHHHHHHhcCCHHHHHHHhhc
Q 005721 72 DN------AEALRMTTWMVEYFYNRVQNVIKK-YSIERHWQ-T--LNEEAGGMNDVLYKLFCITQDPKHLMLAHLF 137 (681)
Q Consensus 72 G~------~~aL~va~~~ad~~~~~~~~~~~~-~~~~~~~~-~--l~~E~GGmne~L~~LY~~TGd~~yL~lA~~f 137 (681)
.+ ++.|+.|+++-+|..+.-+. ... .+...... . ...| +..+-+|||..|||+.||+.++..
T Consensus 194 k~~D~~yA~~lL~~Ak~~y~fA~~~~g~-y~~~~~~~~g~Y~ss~~~DE---l~WAAawLY~aTgd~~Yl~~~~~~ 265 (489)
T PLN00119 194 APSDPAYASILIGHAKDLFEFAKAHPGL-YQNSIPNAGGFYASSGYEDE---LLWAAAWLHRATNDQTYLDYLTQA 265 (489)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCCCc-ccCCCCCCCCCCCCCchhhH---HHHHHHHHHHHhCCHHHHHHHHhc
Confidence 32 45788888888888653111 000 00000000 0 1112 446778999999999999987644
No 59
>PLN03009 cellulase
Probab=57.39 E-value=1e+02 Score=35.67 Aligned_cols=127 Identities=12% Similarity=-0.030 Sum_probs=64.5
Q ss_pred CCchHHHHHHHHHHHHHHHhhhhCCCceeec-cCCc-----hhhhhhc---cCCCcc-----cccc-hHHHHHHHHHHHH
Q 005721 5 THNESLKEKMSAVVSALSACQKEIGSGYLSA-FPTE-----QFDRLEA---LIPVWA-----PYYT-IHKILAGLLDQYT 69 (681)
Q Consensus 5 t~D~~L~~k~~~~V~~l~~~Q~~~~dGYl~~-~~~~-----~~~~~~~---~~~~W~-----pyy~-~HkI~aGLld~y~ 69 (681)
.+-+.+++.++.-+|+|.+||. .+|-+-. .-+. .+.+=|. .+.... |--+ .-.+-+.|-.+++
T Consensus 110 ~~~~diLdeikw~~D~llkm~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~is~~~p~sd~a~~~AAalA~as~ 187 (495)
T PLN03009 110 SELRNSLVAIRWATDYLLKTVS--QPNRIFVQVGDPIADHNCWERPEDMDTPRTVYAVNAPNPASDVAGETAAALAASSM 187 (495)
T ss_pred cccHHHHHHHHHHHHHHHHccc--CcCeEEEEeCCCCCCcccCcChhhcCCCCeEEEecCCCCccHHHHHHHHHHHHHHH
Confidence 3557799999999999999987 4443211 1000 0111111 111110 1000 1233444444555
Q ss_pred HcC------CHHHHHHHHHHHHHHHHHhhhhhhccccc-c---ccc---cccccccchHHHHHHHHHhcCCHHHHHHHhh
Q 005721 70 YAD------NAEALRMTTWMVEYFYNRVQNVIKKYSIE-R---HWQ---TLNEEAGGMNDVLYKLFCITQDPKHLMLAHL 136 (681)
Q Consensus 70 ~tG------~~~aL~va~~~ad~~~~~~~~~~~~~~~~-~---~~~---~l~~E~GGmne~L~~LY~~TGd~~yL~lA~~ 136 (681)
.-. .++.|+.|+++-+|..+.-+..-...... . ... ....| +..+-+|||+.|||++||+-++.
T Consensus 188 vfk~~D~~YA~~ll~~Ak~ly~~a~~~~g~y~~~~~~~~g~~~~Y~~~s~~~DE---~~WAAawLy~aTgd~~Yl~~~~~ 264 (495)
T PLN03009 188 AFRSSDPGYSETLLRNAIKTFQFADMYRGAYSDNDDIKDGVCPFYCDFDGYQDE---LLWGAAWLRRASGDDSYLNYIEN 264 (495)
T ss_pred hccccCHHHHHHHHHHHHHHHHHHHHcCCCccCCccccCccccCcCCcccccHH---HHHHHHHHHHHhCCHHHHHHHHH
Confidence 443 23578888888888865321110000000 0 000 01123 34677899999999999998753
No 60
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=56.35 E-value=1e+02 Score=33.74 Aligned_cols=179 Identities=18% Similarity=0.137 Sum_probs=91.1
Q ss_pred cCCchHHHHHHHHHHHHHHHhhhhCCCceeeccCCchhhhhhccCCCcccccchHHHH-------HHHHHHHHHcCCHHH
Q 005721 4 STHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKIL-------AGLLDQYTYADNAEA 76 (681)
Q Consensus 4 ~t~D~~L~~k~~~~V~~l~~~Q~~~~dGYl~~~~~~~~~~~~~~~~~W~pyy~~HkI~-------aGLld~y~~tG~~~a 76 (681)
-||++-+.+++++.+|-|.+-.+. +.--.|+.-. --.++|...=.+ |- .-+|.+|.+-|++..
T Consensus 200 ~tg~~ifee~arkaldflwekr~r-ss~l~g~~in-------ihsgdw~rkdsg--igagidsyyey~lkayillgddsf 269 (587)
T KOG2430|consen 200 FTGAPIFEEKARKALDFLWEKRHR-SSDLMGTTIN-------IHSGDWTRKDSG--IGAGIDSYYEYLLKAYILLGDDSF 269 (587)
T ss_pred ccCChhhHHHHHHHHHHHHHHhcc-cccccceeEE-------eccCcceecccC--cCcchHHHHHHHHHHhheeccHHH
Confidence 389999999999999988765442 3223332110 012344332111 11 335677778899999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccccccccccccccchHHHHHH----HHHhcCCH-HHHHHHhh----ccccccchhhh
Q 005721 77 LRMTTWMVEYFYNRVQNVIKKYSIERHWQTLNEEAGGMNDVLYK----LFCITQDP-KHLMLAHL----FDKPCFLGLLA 147 (681)
Q Consensus 77 L~va~~~ad~~~~~~~~~~~~~~~~~~~~~l~~E~GGmne~L~~----LY~~TGd~-~yL~lA~~----f~~~~~~~~l~ 147 (681)
|+-.-+.-|-+.+.+....--++..-|--+++ .+|=| ++|.- |--+-||- .-+++-+. +.+..|+ |.+
T Consensus 270 ldrfn~hydai~ryi~k~pi~ldvhihkp~l~-ar~~m-dallaf~pglqvlkgdik~aie~heml~qvikkh~fl-pea 346 (587)
T KOG2430|consen 270 LDRFNKHYDAIKRYINKGPIFLDVHIHKPMLA-ARGFM-DALLAFFPGLQVLKGDIKEAIEMHEMLFQVIKKHKFL-PEA 346 (587)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEecccchhh-HhhHH-HHHHHhCcchhhhccccHHHHHHHHHHHHHHHHcccC-hHh
Confidence 98888888877655432100001111111121 11112 22211 22234542 22222221 1223333 222
Q ss_pred hcCCCCCCCcccCccccc----hHHHHHHHHhCChHHHHHHHHHHHHhhccceee
Q 005721 148 LQADDISGFHSNTHIPIV----IGSQMRYEVTGDQLHKTISMFFMDIVNSSHTYA 198 (681)
Q Consensus 148 ~~~D~l~g~HanthiP~~----~G~a~~Y~~TGd~~y~~aa~~f~d~v~~~h~y~ 198 (681)
...|-- .|+-. -|+. ..---+|+.|||+.|++.++..+++++++--.+
T Consensus 347 ft~df~--vhwae-hpirpefaestyflykat~dp~yl~v~k~iidninkyakvp 398 (587)
T KOG2430|consen 347 FTHDFQ--VHWAE-HPIRPEFAESTYFLYKATGDPHYLEVAKQIIDNINKYAKVP 398 (587)
T ss_pred hcccce--eeccc-CCCChhhhhhheeeecccCCchHHHHHHHHHHHHhhheeCC
Confidence 222221 24322 2432 333446999999999999999999998654433
No 61
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=56.23 E-value=50 Score=37.90 Aligned_cols=122 Identities=16% Similarity=0.177 Sum_probs=64.2
Q ss_pred cCCchHHHHHHHHHHHHHHHhhhhCCCceeecc-CCchhhhhhccCCCcccccchHHHHHHHHHHHHHcCCHHHHH----
Q 005721 4 STHNESLKEKMSAVVSALSACQKEIGSGYLSAF-PTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALR---- 78 (681)
Q Consensus 4 ~t~D~~L~~k~~~~V~~l~~~Q~~~~dGYl~~~-~~~~~~~~~~~~~~W~pyy~~HkI~aGLld~y~~tG~~~aL~---- 78 (681)
..+|.+ -+++.++.+...|. ++|.+... |... ....--|-|..+-|+ .+-++|+++||.+.++
T Consensus 164 ~~~~~~---l~~~~l~~~~~~q~--~~G~~p~~~P~~~------~~~~~~~~w~l~~i~-~~~~~y~~tGD~~~l~~~~~ 231 (509)
T PF05592_consen 164 SFGDAA---LYRKWLRDFADSQR--PDGLLPSVAPSYG------GGGFGIPDWSLAWII-IPWDYYLYTGDREFLEEYYP 231 (509)
T ss_dssp CT--HH---HHHHHHHHHHGGTT--TSTT-SSBSS---------SSGGGBHHHHHHHHH-HHHHHHHHHT-HHHHHHHHH
T ss_pred hCCcHH---HHHHHHHHHHHhhc--ccCCceEEecccC------CCCCCCccHHHHHHH-HHHHHHHHhCCHHHHHHHHH
Confidence 345544 46678889999999 89987652 3211 011112334444354 4569999999997665
Q ss_pred HHHHHHHHHHHHhhhh---hhccccccccc----cccccccc----------hHHHHHHHHHhcCCH----HHHHHHhhc
Q 005721 79 MTTWMVEYFYNRVQNV---IKKYSIERHWQ----TLNEEAGG----------MNDVLYKLFCITQDP----KHLMLAHLF 137 (681)
Q Consensus 79 va~~~ad~~~~~~~~~---~~~~~~~~~~~----~l~~E~GG----------mne~L~~LY~~TGd~----~yL~lA~~f 137 (681)
.++++.+|+.++..+. +....... |. ......++ ....+.+|.++.|++ +|.++|+.+
T Consensus 232 ~~~~~l~~~~~~~~~~~~~~~~~~~~D-W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~~~a~~y~~~a~~l 310 (509)
T PF05592_consen 232 AMKRYLDYLERRVDDGLDGLPGWGFGD-WLAPGNDGDGPTPGATITNALYYYALRAAAELAEALGKDEDAAEYRARAERL 310 (509)
T ss_dssp HHHHHHHHHHTTB-TSSB-CCSB--S--SS----TT---SCCEEHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccccCCCCCceee-cCCccCcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6777778776554430 11111111 22 01111111 125677888899985 788888876
Q ss_pred c
Q 005721 138 D 138 (681)
Q Consensus 138 ~ 138 (681)
.
T Consensus 311 k 311 (509)
T PF05592_consen 311 K 311 (509)
T ss_dssp H
T ss_pred H
Confidence 4
No 62
>PLN02308 endoglucanase
Probab=55.97 E-value=1e+02 Score=35.73 Aligned_cols=123 Identities=8% Similarity=-0.051 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhCCCceeec-cCC-----chhhhhhccCCCcccccc----------hHHHHHHHHHHHHHc
Q 005721 8 ESLKEKMSAVVSALSACQKEIGSGYLSA-FPT-----EQFDRLEALIPVWAPYYT----------IHKILAGLLDQYTYA 71 (681)
Q Consensus 8 ~~L~~k~~~~V~~l~~~Q~~~~dGYl~~-~~~-----~~~~~~~~~~~~W~pyy~----------~HkI~aGLld~y~~t 71 (681)
+.+++.++.-.|+|++||. ++|.+-. .-. ..|.+=|.... --|.|. .-.+-|.|-.+++.-
T Consensus 112 ~~~ldeikw~~D~llkm~~--~~~~vy~qVg~~~~dh~~W~~Pe~~~~-~R~~y~~~~~~pgSd~a~~~AAAlA~as~vf 188 (492)
T PLN02308 112 ENAVKAVKWATDYLMKATA--IPNVVYVQVGDAYSDHNCWERPEDMDT-LRTVYKIDPSHPGSDVAGETAAALAAASIVF 188 (492)
T ss_pred HHHHHHHHHHHHHHHHhcC--CCCeEEEEecCCCCCccCCCChhHcCC-cceEEecCCCCCcchHHHHHHHHHHHHHHhc
Confidence 4577888899999999998 6665421 000 01111111100 001111 112334444555554
Q ss_pred CC------HHHHHHHHHHHHHHHHHhhhhhhccccc--cccc---cccccccchHHHHHHHHHhcCCHHHHHHHhh
Q 005721 72 DN------AEALRMTTWMVEYFYNRVQNVIKKYSIE--RHWQ---TLNEEAGGMNDVLYKLFCITQDPKHLMLAHL 136 (681)
Q Consensus 72 G~------~~aL~va~~~ad~~~~~~~~~~~~~~~~--~~~~---~l~~E~GGmne~L~~LY~~TGd~~yL~lA~~ 136 (681)
.+ ++.|+.|+++-+|..+.-+..-...... .... ....| +..+-+|||..|||++||+.+..
T Consensus 189 ~~~D~~YA~~lL~~Ak~ly~fa~~~~g~y~~~~~~~~~~~Y~~~s~~~DE---l~WAAawLy~ATgd~~Yl~~~~~ 261 (492)
T PLN02308 189 RKRDPAYSRLLLDRAVRVFAFADKYRGAYSSSLHAAVCPFYCDFNGYQDE---LLWGAAWLHKASRRREYREYIVK 261 (492)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcccCCCcCCCCcccHH---HHHHHHHHHHHhCCHHHHHHHHH
Confidence 32 4678888888888865321110000000 0000 01122 34677899999999999997754
No 63
>PLN02171 endoglucanase
Probab=53.48 E-value=4.2e+02 Score=31.75 Aligned_cols=126 Identities=9% Similarity=0.006 Sum_probs=62.6
Q ss_pred chHHHHHHHHHHHHHHHhhhhCCCceeec-cC-----Cchhhhhhcc---CCCc-----cccc-chHHHHHHHHHHHHHc
Q 005721 7 NESLKEKMSAVVSALSACQKEIGSGYLSA-FP-----TEQFDRLEAL---IPVW-----APYY-TIHKILAGLLDQYTYA 71 (681)
Q Consensus 7 D~~L~~k~~~~V~~l~~~Q~~~~dGYl~~-~~-----~~~~~~~~~~---~~~W-----~pyy-~~HkI~aGLld~y~~t 71 (681)
-+.+++.++.-.|+|++||. .+|-|-. -- ...+.+=|+. +... .|-- .--..-|+|-.+++.-
T Consensus 115 ~~~~Ldeikw~~Dyllk~~~--~~~~~y~qVgdg~~DH~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaaS~vf 192 (629)
T PLN02171 115 LGHAMDAVKWGTDYFIKAHP--EPNVLYGEVGDGDTDHYCWQRPEDMTTDRQAYRIDPQNPGSDLAGETAAAMAAASIVF 192 (629)
T ss_pred cHHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCccccCcCChhHccccceeEEecCCCCchHHHHHHHHHHHHHHHhc
Confidence 35688889999999999997 4432211 00 0011111111 1111 0100 0112234444445543
Q ss_pred CC------HHHHHHHHHHHHHHHHHhhhhhhcccc-cccccc---ccccccchHHHHHHHHHhcCCHHHHHHHhhc
Q 005721 72 DN------AEALRMTTWMVEYFYNRVQNVIKKYSI-ERHWQT---LNEEAGGMNDVLYKLFCITQDPKHLMLAHLF 137 (681)
Q Consensus 72 G~------~~aL~va~~~ad~~~~~~~~~~~~~~~-~~~~~~---l~~E~GGmne~L~~LY~~TGd~~yL~lA~~f 137 (681)
.+ ++.|+.|+++-+|..+.-+..-...+. ...... ...| +..+-+|||..|||+.||+.+...
T Consensus 193 k~~D~~YA~~lL~~Ak~ly~fA~~~~g~y~~~~~~~~~~Y~s~s~y~DE---l~WAAawLy~ATgd~~Yl~~~~~~ 265 (629)
T PLN02171 193 RRSNPGYANELLTHAKQLFDFADKYRGKYDSSITVAQKYYRSVSGYGDE---LLWAAAWLYQATNNQYYLDYLGNN 265 (629)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHhCCCcccCCCcccCCccCCCCCccHH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 32 467888888888886531110000000 001110 1122 346778999999999999987653
No 64
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=51.77 E-value=35 Score=39.46 Aligned_cols=90 Identities=24% Similarity=0.228 Sum_probs=53.5
Q ss_pred CCCccccc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhh----hhccccccccccccc-----cccch--
Q 005721 48 IPVWAPYY--TIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRVQNV----IKKYSIERHWQTLNE-----EAGGM-- 114 (681)
Q Consensus 48 ~~~W~pyy--~~HkI~aGLld~y~~tG~~~aL~va~~~ad~~~~~~~~~----~~~~~~~~~~~~l~~-----E~GGm-- 114 (681)
+..|+|-+ ..-.+..||||.|+.+|+...|+-|+++-|=-.+-|=+. +.....+..-.-+.+ |--|-
T Consensus 568 ~~~~~~~FldDYAFlI~gLLDlYea~~~~e~LkwA~~LQdtqdklFWdgggYF~Se~~~~~v~vRlkeDhDGAEPs~nSV 647 (786)
T KOG2244|consen 568 RPSKAPAFLDDYAFLISGLLDLYEAGGGIEWLKWAIKLQDTQDKLFWDGGGYFISEKTDEDVSVRLKEDHDGAEPSGNSV 647 (786)
T ss_pred CccccchhhhhHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHheecCCceeeeeccCCCcceeeccccCCCCCCccch
Confidence 46777642 122478999999999999999998888876443321110 000000000000001 11110
Q ss_pred -HHHHHHHHHhcCCHHHHHHHhhc
Q 005721 115 -NDVLYKLFCITQDPKHLMLAHLF 137 (681)
Q Consensus 115 -ne~L~~LY~~TGd~~yL~lA~~f 137 (681)
..-|++||.+++.+.||+-|.++
T Consensus 648 sahNLvrL~~~~~~e~yl~ka~~l 671 (786)
T KOG2244|consen 648 SAHNLVRLASIVAAESYLNKAHRL 671 (786)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHH
Confidence 15799999999999999999875
No 65
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=51.44 E-value=43 Score=36.00 Aligned_cols=90 Identities=14% Similarity=0.127 Sum_probs=58.1
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHhhccceeeecCCCCCCCCCCCcccccCCCCCcccchhhHHHHHHHHHHhcccCCc--
Q 005721 168 SQMRYEVTGDQLHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEI-- 245 (681)
Q Consensus 168 ~a~~Y~~TGd~~y~~aa~~f~d~v~~~h~y~tGG~s~~E~f~~p~~l~~~l~~~~~EtCas~nmlkl~~~Lf~~tgd~-- 245 (681)
.|++|..|+|++|++++.+..+.+. .--|+.||.-.. |-......+.+ +---=+.++.|.+.+....-.++-
T Consensus 48 La~~y~~t~d~~y~~A~~kgl~ylL-~aQypnGGWPQ~--yP~~~~Y~~~I---TfNDdam~~vl~lL~~v~~~~~~~~~ 121 (289)
T PF09492_consen 48 LARVYQATKDPRYREAFLKGLDYLL-KAQYPNGGWPQF--YPLRGGYHDHI---TFNDDAMVNVLELLRDVAEGKGDFAF 121 (289)
T ss_dssp HHHHHHHCG-HHHHHHHHHHHHHHH-HHS-TTS--BSE--CS--SGGGGSE---E-GGGHHHHHHHHHHHHHCT-TTSTT
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHH-HhhCCCCCCCcc--CCCCCCCCCce---EEccHHHHHHHHHHHHHHhhcCCccc
Confidence 6888999999999999999999998 467899988752 21111111111 111224578888888888888888
Q ss_pred -------hhHHHHHHHHhhhcccccC
Q 005721 246 -------AYADYYERSLTNGVLGIQR 264 (681)
Q Consensus 246 -------~YaD~~EralyN~ila~q~ 264 (681)
++.+.++|.+ ..||..|-
T Consensus 122 v~~~~~~r~~~A~~kgi-~ciL~tQi 146 (289)
T PF09492_consen 122 VDESLRARARAAVDKGI-DCILKTQI 146 (289)
T ss_dssp S-HHHHHHHHHHHHHHH-HHHHHHS-
T ss_pred cCHHHHHHHHHHHHHHH-HHHHHHHc
Confidence 7888888877 55666553
No 66
>PLN02420 endoglucanase
Probab=51.19 E-value=1.3e+02 Score=35.13 Aligned_cols=127 Identities=9% Similarity=-0.031 Sum_probs=62.8
Q ss_pred CchHHHHHHHHHHHHHHHhhhhCCCceee-cc-----CCchhhhhhc---cCCCcc-----cccc-hHHHHHHHHHHHHH
Q 005721 6 HNESLKEKMSAVVSALSACQKEIGSGYLS-AF-----PTEQFDRLEA---LIPVWA-----PYYT-IHKILAGLLDQYTY 70 (681)
Q Consensus 6 ~D~~L~~k~~~~V~~l~~~Q~~~~dGYl~-~~-----~~~~~~~~~~---~~~~W~-----pyy~-~HkI~aGLld~y~~ 70 (681)
+-+.+++.++.-.|+|++||. .++-+- -. ....|.+=|. .+.... |--. .-..-+.|-.+++.
T Consensus 125 ~~~d~Ldeikw~lD~llk~~~--~~~~~~~qvGdg~~DH~~w~~Pe~~~~~R~~~~i~~~~pgsd~aa~~AAALA~AS~v 202 (525)
T PLN02420 125 ELSHALEAIKWGTDYFIKAHT--SPNVLWAEVGDGDTDHYCWQRPEDMTTSRRAFKIDENNPGSDIAGETAAAMAAASIV 202 (525)
T ss_pred CcHHHHHHHHHHHHHHHHhCc--CCCceEEeeCCCCcccccccChhhccccCceEEecCCCCccHHHHHHHHHHHHHHHh
Confidence 467899999999999999997 332220 00 0001111111 111100 1000 11122333334443
Q ss_pred cCC------HHHHHHHHHHHHHHHHHhhhhhhcccc-cccc---ccccccccchHHHHHHHHHhcCCHHHHHHHhhc
Q 005721 71 ADN------AEALRMTTWMVEYFYNRVQNVIKKYSI-ERHW---QTLNEEAGGMNDVLYKLFCITQDPKHLMLAHLF 137 (681)
Q Consensus 71 tG~------~~aL~va~~~ad~~~~~~~~~~~~~~~-~~~~---~~l~~E~GGmne~L~~LY~~TGd~~yL~lA~~f 137 (681)
-.+ ++.|+.|+++-+|..+.-+..-...+. .... .....| +..+-+|||+.|||+.||+.|...
T Consensus 203 fk~~D~~YA~~~L~~Ak~ly~fA~~~~g~y~~~~~~~~g~Y~s~s~y~DE---l~WAAawLY~ATgd~~Yl~~a~~~ 276 (525)
T PLN02420 203 FRSTNPHYSHLLLHHAQQLFEFGDKYRGKYDESLKVVKSYYASVSGYMDE---LLWGATWLYRATDNEHYMSYVVDM 276 (525)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhcCCccCCCCcccCCCCCCcCcccHH---HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 332 357888888888876421110000000 0000 001123 446788999999999999988643
No 67
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=44.97 E-value=22 Score=31.45 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=18.0
Q ss_pred ccCCchHHHHHHHHHHHHHHHhhhhCCCceeecc
Q 005721 3 ASTHNESLKEKMSAVVSALSACQKEIGSGYLSAF 36 (681)
Q Consensus 3 a~t~D~~L~~k~~~~V~~l~~~Q~~~~dGYl~~~ 36 (681)
...+++...+.+++.+++|.++|. +||-++..
T Consensus 37 ~~~~~~~~~~ai~ka~~~l~~~Q~--~dG~w~~~ 68 (109)
T PF13243_consen 37 AAAGDAAVDEAIKKAIDWLLSHQN--PDGGWGYS 68 (109)
T ss_dssp ----TS-SSBSSHHHHHHHHH-----TTS--S-T
T ss_pred cccCCCCcHHHHHHHHHHHHHhcC--CCCCCCCc
Confidence 345667788888999999999999 89966543
No 68
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=42.02 E-value=1.2e+02 Score=35.24 Aligned_cols=120 Identities=16% Similarity=0.230 Sum_probs=68.9
Q ss_pred CcccCCchHHHHHHHHHHHHHHHhhhhCCCceeeccCCchhhhhhc---cCCCcc--------cccchHHHHHHHHHHHH
Q 005721 1 MWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEA---LIPVWA--------PYYTIHKILAGLLDQYT 69 (681)
Q Consensus 1 mya~t~D~~L~~k~~~~V~~l~~~Q~~~~dGYl~~~~~~~~~~~~~---~~~~W~--------pyy~~HkI~aGLld~y~ 69 (681)
+|+.|+|+-+++|+.++-+.|+.+-. .++|= |...- .... -+..|+ -+=+.|+-+.-| -.
T Consensus 274 ay~lsge~~f~~kA~~igdkLLpAfn-tptGI----p~~~v-n~ksG~~~n~~wasgg~SILaE~gtlhlef~~L---S~ 344 (625)
T KOG2204|consen 274 AYALSGEEMFLEKAPEIGDKLLPAFN-TPTGI----PKALV-NNKSGDADNYGWASGGSSILAEFGTLHLEFSYL---SK 344 (625)
T ss_pred HhhhcccHHHHHhhHHHHHHhhhccc-CCCCC----chhhh-ccccCccCCcccccCcchHhhhcCceeeehHHh---hh
Confidence 48899999999999999999987754 14332 11000 0001 123343 345667666554 25
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhh--hhhcc--ccccccccccccccchHHHHH----HHHHhcCCHH
Q 005721 70 YADNAEALRMTTWMVEYFYNRVQN--VIKKY--SIERHWQTLNEEAGGMNDVLY----KLFCITQDPK 129 (681)
Q Consensus 70 ~tG~~~aL~va~~~ad~~~~~~~~--~~~~~--~~~~~~~~l~~E~GGmne~L~----~LY~~TGd~~ 129 (681)
.+|++..-+.+++.-+-+.+...+ +.+.+ +...-|.-.+.+.|+|-++++ +++-.|++..
T Consensus 345 ltg~P~~~ekv~~IRk~l~k~ekP~GLypnYinP~sg~wgq~~tslg~lgDSfyeyllK~wl~s~kTd 412 (625)
T KOG2204|consen 345 LTGNPTFAEKVVKIRKVLNKSEKPHGLYPNYINPSSGEWGQHHTSLGALGDSFYEYLLKAWLQSDKTD 412 (625)
T ss_pred ccCCchHHHHHHHHHHHHHhhcCCCCCCcccccCCCCchhhHHhHHhhhhhhHHHHHHHHHhhcCCcc
Confidence 789988777777666655543322 11211 112235445667787776554 5666676543
No 69
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=41.47 E-value=43 Score=38.36 Aligned_cols=79 Identities=15% Similarity=0.110 Sum_probs=48.4
Q ss_pred HHHHHHHHhcCCHHHHHHHhhccccccchhhhhcCCCCCCCccc----Cccc-cchHHHHHHHHhCChHHHHHHHHHHHH
Q 005721 116 DVLYKLFCITQDPKHLMLAHLFDKPCFLGLLALQADDISGFHSN----THIP-IVIGSQMRYEVTGDQLHKTISMFFMDI 190 (681)
Q Consensus 116 e~L~~LY~~TGd~~yL~lA~~f~~~~~~~~l~~~~D~l~g~Han----thiP-~~~G~a~~Y~~TGd~~y~~aa~~f~d~ 190 (681)
.++++-|.+++|+...+++..+-+.--++.+. .+......-| ..-| .+.+...+|++|++++|++.|+..=++
T Consensus 391 l~~vra~~~s~D~~Lw~~~~~m~~~~gLGdig--~~~~~~~~~~~~~~~~sp~~L~allEL~~atq~~~~l~lA~~~g~~ 468 (557)
T PF06917_consen 391 LPYVRAYRLSRDPELWDLARTMAHHFGLGDIG--NAAGKEPRVNMQTDNASPYLLFALLELYQATQDARYLELADQVGEN 468 (557)
T ss_dssp HHHHHHHHHS--HHHHHHHHHHHHHTT-EE-T--TBTTBS-EE-TT-----HHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhcCccccc--CccccccccccCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 68999999999999999998876543333221 1111111111 1223 357788899999999999999988888
Q ss_pred hhccce
Q 005721 191 VNSSHT 196 (681)
Q Consensus 191 v~~~h~ 196 (681)
+.++|.
T Consensus 469 l~~~~~ 474 (557)
T PF06917_consen 469 LFEQHF 474 (557)
T ss_dssp HHHHHE
T ss_pred HHHHHc
Confidence 876443
No 70
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=41.32 E-value=52 Score=29.80 Aligned_cols=36 Identities=28% Similarity=0.279 Sum_probs=26.4
Q ss_pred CcEEEECCeecCCCCCCCEEEEEeecCCCCEEEEEecceeEEEec
Q 005721 388 GAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLPLTLRTEAI 432 (681)
Q Consensus 388 ~~~v~VNG~~~~~~~~ggy~~I~R~W~~GD~V~L~LPm~lr~~~~ 432 (681)
+-+|.|||+.+... ..-+.||+|+|.|.-.+....+
T Consensus 33 ~GrV~vNG~~aKpS---------~~VK~GD~l~i~~~~~~~~v~V 68 (100)
T COG1188 33 GGRVKVNGQRAKPS---------KEVKVGDILTIRFGNKEFTVKV 68 (100)
T ss_pred CCeEEECCEEcccc---------cccCCCCEEEEEeCCcEEEEEE
Confidence 45899999987532 1237899999999877766544
No 71
>TIGR03000 plancto_dom_1 Planctomycetes uncharacterized domain TIGR03000. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to six proteins per genome, and may be duplicated within a protein. The function is unknown.
Probab=38.63 E-value=1.7e+02 Score=25.20 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=17.4
Q ss_pred eEEEEeccCCccCCCcEEEECCeecCC
Q 005721 374 TSLNLRIPTWTSSNGAKATLNGQDLPL 400 (681)
Q Consensus 374 ftL~LRIP~Wa~~~~~~v~VNG~~~~~ 400 (681)
-+|.|.+| . +++|+|||++...
T Consensus 3 a~itv~vP---a--dAkl~v~G~~t~~ 24 (75)
T TIGR03000 3 ATITVTLP---A--DAKLKVDGKETNG 24 (75)
T ss_pred eEEEEEeC---C--CCEEEECCeEccc
Confidence 36888999 2 6899999998653
No 72
>PHA02651 IL-1 receptor antagonist; Provisional
Probab=37.17 E-value=24 Score=34.73 Aligned_cols=39 Identities=26% Similarity=0.434 Sum_probs=24.9
Q ss_pred eEEEeeccCCCCCeEEEeecCCcceEEEEeeccCCCCcEEEE
Q 005721 580 VFHLVAGLDGGDRTVSLESETYKGCFVYTAVNLQSSESTKLG 621 (681)
Q Consensus 580 ~f~~vpgl~g~~~~vsle~~~~pg~~~~~~~~~~~g~~~~~~ 621 (681)
.|.+--.=.| .+.+|||+.+||||+..... .....|.|.
T Consensus 105 RFlFyr~~sG--~tstFESaafPgWfIsTs~~-e~~~PV~Lt 143 (165)
T PHA02651 105 RFAFIRSDNG--HTSTFESVAFPGWFLCTSSG-DGIEPVGLT 143 (165)
T ss_pred eEEEEEccCC--CceEEEecCCCCcEEEeccc-cCCcceEee
Confidence 3444433345 49999999999999986410 012467766
No 73
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=36.63 E-value=1.3e+02 Score=32.47 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=49.9
Q ss_pred CcccCCchHHHHHHHHHHHHHHHhhhhCCCceeeccCCchhhhhhccCCCcccccc---hHHHHHHHHHHHHHcC-----
Q 005721 1 MWASTHNESLKEKMSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYT---IHKILAGLLDQYTYAD----- 72 (681)
Q Consensus 1 mya~t~D~~L~~k~~~~V~~l~~~Q~~~~dGYl~~~~~~~~~~~~~~~~~W~pyy~---~HkI~aGLld~y~~tG----- 72 (681)
||..|+|+..++.+.+-|+.|++.|- ++|=...|.. ....-..+-++.. .| +|.-|.+.+..-+
T Consensus 56 ~y~~t~d~~y~~A~~rgld~LL~aQy--pnGGWPQf~p-----~~~~Y~~~ITfND~am~~-vl~lL~~i~~~~~~~~~~ 127 (290)
T TIGR02474 56 VYQQEKNAKYRDAARKGIEYLLKAQY--PNGGWPQFYP-----LKGGYSDAITYNDNAMVN-VLTLLDDIANGKDPFDVF 127 (290)
T ss_pred HHHhcCchhHHHHHHHHHHHHHhhhC--CCCCcCcccC-----CcCCcccccccCcHHHHH-HHHHHHHHHhccCCcccc
Confidence 47789999999999999999999999 6643332221 0000001112211 12 4444555554333
Q ss_pred ----CHHHHHHHHHHHHHHHHH
Q 005721 73 ----NAEALRMTTWMVEYFYNR 90 (681)
Q Consensus 73 ----~~~aL~va~~~ad~~~~~ 90 (681)
.+++...+.|-.+||.+.
T Consensus 128 ~~~~~~r~~~Ai~Rgid~ILkt 149 (290)
T TIGR02474 128 PDSTRTRAKTAVTKGIECILKT 149 (290)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh
Confidence 257888888888988753
No 74
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=36.49 E-value=1.1e+02 Score=35.49 Aligned_cols=27 Identities=26% Similarity=0.268 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcccCCchhHHHHHHHH
Q 005721 229 YNMLKVSRHLFRWTKEIAYADYYERSL 255 (681)
Q Consensus 229 ~nmlkl~~~Lf~~tgd~~YaD~~Eral 255 (681)
-+++.++-.|++.|+|+.|.+.=|-++
T Consensus 374 PElvEStyyLYrATkdp~yL~vG~~~l 400 (622)
T KOG2429|consen 374 PELVESTYYLYRATKDPFYLHVGEDML 400 (622)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 478899999999999999999888765
No 75
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=35.60 E-value=78 Score=28.31 Aligned_cols=51 Identities=18% Similarity=0.440 Sum_probs=31.5
Q ss_pred EEEECCeecCCCCCCCEEEEEeecCCCCEEEEEec-ceeEE-----EecCCCcccccCeEEEeecceeee
Q 005721 390 KATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLP-LTLRT-----EAIQDDRPEYASIQAILYGPYVLA 453 (681)
Q Consensus 390 ~v~VNG~~~~~~~~ggy~~I~R~W~~GD~V~L~LP-m~lr~-----~~~~d~~~~~~~~vAv~rGPlVlA 453 (681)
.++|||+.. ...++..+.++ +||.|+|+-. -..|+ ++++. --+.|||+|+.
T Consensus 30 ~~~v~~~~~-~~~~~~~~~l~----~g~~i~~~a~~~~a~~lll~GePl~E--------pi~~~GpFVmn 86 (104)
T PF05726_consen 30 SVEVGGEED-PLEAGQLVVLE----DGDEIELTAGEEGARFLLLGGEPLNE--------PIVQYGPFVMN 86 (104)
T ss_dssp EEEETTTTE-EEETTEEEEE-----SECEEEEEESSSSEEEEEEEE----S----------EEETTEEES
T ss_pred cEEECCCcc-eECCCcEEEEC----CCceEEEEECCCCcEEEEEEccCCCC--------CEEEECCcccC
Confidence 466777651 11256677776 7899999998 66666 33322 25789999985
No 76
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=33.58 E-value=69 Score=34.43 Aligned_cols=80 Identities=14% Similarity=0.112 Sum_probs=49.4
Q ss_pred CcccCCchHHHHHHHHHHHHHHHhhhhCCC-ceeeccCCchhhhhhccCCCcccccc--hH---HHHHHHHHHHHHcCCH
Q 005721 1 MWASTHNESLKEKMSAVVSALSACQKEIGS-GYLSAFPTEQFDRLEALIPVWAPYYT--IH---KILAGLLDQYTYADNA 74 (681)
Q Consensus 1 mya~t~D~~L~~k~~~~V~~l~~~Q~~~~d-GYl~~~~~~~~~~~~~~~~~W~pyy~--~H---kI~aGLld~y~~tG~~ 74 (681)
||..|+|+.+++-+.+-|+.|+++|- ++ ||=.-||.. .....+.| -. -+|.=|.+.+...++-
T Consensus 51 ~y~~t~d~~y~~A~~kgl~ylL~aQy--pnGGWPQ~yP~~---------~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~ 119 (289)
T PF09492_consen 51 VYQATKDPRYREAFLKGLDYLLKAQY--PNGGWPQFYPLR---------GGYHDHITFNDDAMVNVLELLRDVAEGKGDF 119 (289)
T ss_dssp HHHHCG-HHHHHHHHHHHHHHHHHS---TTS--BSECS-----------SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTS
T ss_pred HHHHhCChHHHHHHHHHHHHHHHhhC--CCCCCCccCCCC---------CCCCCceEEccHHHHHHHHHHHHHHhhcCCc
Confidence 47889999999999999999999999 44 555545431 11111111 00 0333345666666665
Q ss_pred ---------HHHHHHHHHHHHHHHHh
Q 005721 75 ---------EALRMTTWMVEYFYNRV 91 (681)
Q Consensus 75 ---------~aL~va~~~ad~~~~~~ 91 (681)
++.+.+.|-.|+|.+..
T Consensus 120 ~~v~~~~~~r~~~A~~kgi~ciL~tQ 145 (289)
T PF09492_consen 120 AFVDESLRARARAAVDKGIDCILKTQ 145 (289)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999998753
No 77
>COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon [Transcription / Coenzyme metabolism]
Probab=31.26 E-value=49 Score=33.53 Aligned_cols=47 Identities=23% Similarity=0.445 Sum_probs=35.3
Q ss_pred EEeccCCccCC-------CcEEEECCeecCCCCCCCEEEE-EeecCCCCEEEEEecceeEEE
Q 005721 377 NLRIPTWTSSN-------GAKATLNGQDLPLPSPGNFLSV-TKTWSSDDKLTIQLPLTLRTE 430 (681)
Q Consensus 377 ~LRIP~Wa~~~-------~~~v~VNG~~~~~~~~ggy~~I-~R~W~~GD~V~L~LPm~lr~~ 430 (681)
.+|||+|-.++ -+.++|||. .|++.+ +|+-.+.|.|+|-=|+.+|-+
T Consensus 145 gi~Iegf~~~~RtfG~v~~yp~~Ingi-------~gaiV~P~rT~h~~dviEIIapv~LR~~ 199 (214)
T COG1339 145 GIRIEGFKTEDRTFGGVKAYPCKINGI-------EGAIVIPERTHHPTDVIEIIAPVKLRDE 199 (214)
T ss_pred CEeeCCCCCCCceeccEEEEEEEEcCc-------ceEEEeeccccCCcceEEEEccHhHHHH
Confidence 58999997531 156889993 345555 588888999999999999864
No 78
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=30.43 E-value=1.2e+02 Score=36.96 Aligned_cols=57 Identities=21% Similarity=0.366 Sum_probs=41.6
Q ss_pred EEEEEEEeCCCCeeeEEEEeccCCccCCCcEEEECCeecCCCC-CCCEEEEEeecCCC-CEEEEEe
Q 005721 360 RVTLTFSSKGSGLTTSLNLRIPTWTSSNGAKATLNGQDLPLPS-PGNFLSVTKTWSSD-DKLTIQL 423 (681)
Q Consensus 360 ~V~itv~~~~~~~~ftL~LRIP~Wa~~~~~~v~VNG~~~~~~~-~ggy~~I~R~W~~G-D~V~L~L 423 (681)
+++.+|+.. ...-.|.+-||-- + |.+++|||++++... .++|+-|.-. +| .+|+++.
T Consensus 773 ~i~~~i~~~--~~~~~l~~sipy~-~--GW~~~vdGk~~~~~~~~~~f~g~~l~--~G~h~i~~~y 831 (843)
T PF09586_consen 773 HISGTITAT--SKDGYLVLSIPYD-K--GWKAYVDGKKVEIEKVNGGFMGVPLP--KGEHQIELKY 831 (843)
T ss_pred EEEEEEEec--CCCcEEEEEeccC-C--CCEEEECCEEccHhhhcCeEEEEEEc--CCceEEEEEE
Confidence 567777652 2344788999963 3 799999999998754 7889998875 55 6676665
No 79
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=28.44 E-value=1.6e+02 Score=32.21 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=28.5
Q ss_pred cccccc--cccccccchHHHHHHHHHhcCCHHHHHHHhhcc
Q 005721 100 IERHWQ--TLNEEAGGMNDVLYKLFCITQDPKHLMLAHLFD 138 (681)
Q Consensus 100 ~~~~~~--~l~~E~GGmne~L~~LY~~TGd~~yL~lA~~f~ 138 (681)
.+-||. ++..| ..|+-+-||+.||||.||+.|+.+.
T Consensus 351 f~vhwaehpirpe---faestyflykat~dp~yl~v~k~ii 388 (587)
T KOG2430|consen 351 FQVHWAEHPIRPE---FAESTYFLYKATGDPHYLEVAKQII 388 (587)
T ss_pred ceeecccCCCChh---hhhhheeeecccCCchHHHHHHHHH
Confidence 345675 35566 4688999999999999999999764
No 80
>PHA02811 putative host range protein; Provisional
Probab=27.77 E-value=81 Score=31.59 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=29.2
Q ss_pred EEEEEEEeCCCCeeeEEEEeccCCcc--C-CCcEEEECCeecCCC
Q 005721 360 RVTLTFSSKGSGLTTSLNLRIPTWTS--S-NGAKATLNGQDLPLP 401 (681)
Q Consensus 360 ~V~itv~~~~~~~~ftL~LRIP~Wa~--~-~~~~v~VNG~~~~~~ 401 (681)
.+.|.++. .+...|-+-|| |.|.. . ...++++||.++...
T Consensus 32 ~I~Lk~~~-~Kk~~~i~Il~-PdWseI~evKPI~m~~Ng~~vdv~ 74 (197)
T PHA02811 32 TINIKVNQ-QKKLDFIIILR-PDWTEVRNVKKINMVCNGVVIDTT 74 (197)
T ss_pred EEEEEeCC-ccEEEEEEEec-cchhhhhhccceEEEECCcEeEEE
Confidence 67777776 35667888899 99943 1 157899999988754
No 81
>PF03287 Pox_C7_F8A: Poxvirus C7/F8A protein; InterPro: IPR004967 This family includes Poxvirus C7 and F8A proteins.; GO: 0016032 viral reproduction
Probab=26.72 E-value=94 Score=30.09 Aligned_cols=40 Identities=23% Similarity=0.469 Sum_probs=28.6
Q ss_pred EEEEEEEeCCCCeeeEEEEeccCCcc-C--CCcEEEECCeecCCC
Q 005721 360 RVTLTFSSKGSGLTTSLNLRIPTWTS-S--NGAKATLNGQDLPLP 401 (681)
Q Consensus 360 ~V~itv~~~~~~~~ftL~LRIP~Wa~-~--~~~~v~VNG~~~~~~ 401 (681)
.+.|.++. .+...|-+-|| |.|.. . ...++++||..+...
T Consensus 32 ~I~lk~~~-~K~i~f~~Il~-pdwseI~~vKpi~~~~Ng~~id~~ 74 (149)
T PF03287_consen 32 TIKLKSKE-TKKINFIFILR-PDWSEIDEVKPIRMKLNGKSIDLE 74 (149)
T ss_pred EEEEEeCC-ccEEEEEEEEc-cChhhcccccceEEEECCeEeeEE
Confidence 67777765 35667888899 99953 1 146889999877653
No 82
>cd00100 IL1 Interleukin-1 homologes; Cytokines with various biological functions. Interleukin 1 alpha and beta are also known as hematopoietin and catabolin. This family also contains interleukin-1 receptor antagonists (inhibitors).
Probab=25.39 E-value=43 Score=32.30 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=21.0
Q ss_pred CeEEEeecCCcceEEEEeeccCCCCcEEEE
Q 005721 592 RTVSLESETYKGCFVYTAVNLQSSESTKLG 621 (681)
Q Consensus 592 ~~vsle~~~~pg~~~~~~~~~~~g~~~~~~ 621 (681)
.+.+|||+.+||||+-... .....|.+.
T Consensus 103 ~~~~FeSaa~PgWfIsTs~--~~~~PV~l~ 130 (144)
T cd00100 103 NKNYFESAAFPNWFIATKQ--EEDKPVFLA 130 (144)
T ss_pred CceEEEEccCCCcEEEecc--cCCeEEEee
Confidence 3899999999999998641 234566665
No 83
>PF00340 IL1: Interleukin-1 / 18; InterPro: IPR000975 Interleukin-1 alpha and interleukin-1 beta (IL-1 alpha and IL-1 beta) are cytokines that participate in the regulation of immune responses, inflammatory reactions, and hematopoiesis []. Two types of IL-1 receptor, each with three extracellular immunoglobulin (Ig)-like domains, limited sequence similarity (28%) and different pharmacological characteristics have been cloned from mouse and human cell lines: these have been termed type I and type II receptors []. The receptors both exist in transmembrane (TM) and soluble forms: the soluble IL-1 receptor is thought to be post-translationally derived from cleavage of the extracellular portion of the membrane receptors. Both IL-1 receptors appear to be well conserved in evolution, and map to the same chromosomal location []. The receptors can both bind all three forms of IL-1 (IL-1 alpha, IL-1 beta and IL-1RA). The crystal structures of IL1A and IL1B [] have been solved, showing them to share the same 12-stranded beta-sheet structure as both the heparin binding growth factors and the Kunitz-type soybean trypsin inhibitors []. The beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel. Several regions, especially the loop between strands 4 and 5, have been implicated in receptor binding. The Vaccinia virus genes B15R and B18R each encode proteins with N-terminal hydrophobic sequences, possible sites for attachment of N-linked carbohydrate and a short C-terminal hydrophobic domain []. These properties are consistent with the mature proteins being either virion, cell surface or secretory glycoproteins. Protein sequence comparisons reveal that the gene products are related to each other (20% identity) and to the Ig superfamily. The highest degree of similarity is to the human and murine interleukin-1 receptors, although both proteins are related to a wide range of Ig superfamily members, including the interleukin-6 receptor. A novel method for virus immune evasion has been proposed in which the product of one or both of these proteins may bind interleukin-1 and/or interleukin-6, preventing these cytokines reaching their natural receptors []. A similar gene product from Cowpox virus (CPV) has also been shown to specifically bind murine IL-1 beta []. This entry represents Interleukin-1. ; GO: 0005615 extracellular space; PDB: 1J0S_A 3F62_B 2VXT_I 1MD6_A 2KKI_A 2L5X_D 2WRY_A 3NJ5_A 8I1B_A 2MIB_A ....
Probab=24.93 E-value=57 Score=30.32 Aligned_cols=28 Identities=29% Similarity=0.476 Sum_probs=20.8
Q ss_pred eEEEeecCCcceEEEEeeccCCCCcEEEEe
Q 005721 593 TVSLESETYKGCFVYTAVNLQSSESTKLGC 622 (681)
Q Consensus 593 ~vsle~~~~pg~~~~~~~~~~~g~~~~~~~ 622 (681)
+-+|||+.+|||||... ...+..|.|.+
T Consensus 80 ~~~FESaa~PgwFIaT~--~~~~~pv~l~~ 107 (120)
T PF00340_consen 80 TSTFESAAYPGWFIATS--PEDNQPVELTK 107 (120)
T ss_dssp EEEEEESSSTTEEEEBE--SSSTEEEEEES
T ss_pred ceEEEEccCCCeEEEec--ccCCceEEEEe
Confidence 45599999999999864 23456677775
No 84
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=24.54 E-value=16 Score=32.36 Aligned_cols=59 Identities=12% Similarity=0.110 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhhhhCCCceeeccCCchhhhhhccCCCcccccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 005721 14 MSAVVSALSACQKEIGSGYLSAFPTEQFDRLEALIPVWAPYYTIHKILAGLLDQYTYADNAEALRMTTWMVEYFYNRV 91 (681)
Q Consensus 14 ~~~~V~~l~~~Q~~~~dGYl~~~~~~~~~~~~~~~~~W~pyy~~HkI~aGLld~y~~tG~~~aL~va~~~ad~~~~~~ 91 (681)
++..|++|.+.|. +||..+. .. . ...+ +...++.++...++.+..+.+.+.++|+.+..
T Consensus 1 i~~~~~~l~~~Q~--~dG~W~~-~~------~------~~~~----~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q 59 (109)
T PF13243_consen 1 IKRAAEWLLSQQN--PDGSWGY-NW------G------SDVF----VTAALILALAAAGDAAVDEAIKKAIDWLLSHQ 59 (109)
T ss_dssp -----------------------------------------------------------TS-SSBSSHHHHHHHHH--
T ss_pred Ccccccccccccc--ccccccc-cc------c------cccc----ccccccccccccCCCCcHHHHHHHHHHHHHhc
Confidence 4678999999999 9998742 11 0 0111 22333445555577777788899999998754
No 85
>TIGR03515 GldC gliding motility-associated protein GldC. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldC do not abolish the gliding phenotype but do impair it. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=23.74 E-value=1.8e+02 Score=26.60 Aligned_cols=35 Identities=9% Similarity=0.202 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHh
Q 005721 57 IHKILAGLLDQYT-YADNAEALRMTTWMVEYFYNRV 91 (681)
Q Consensus 57 ~HkI~aGLld~y~-~tG~~~aL~va~~~ad~~~~~~ 91 (681)
.|-++.|+-|-|+ +||+++.-+-++.+|+||..++
T Consensus 69 f~qtl~~maDT~~rAT~d~kma~~m~dfcd~faekl 104 (108)
T TIGR03515 69 FIETLGGMADTFLNATGDEKMAEDIKDLCDRLAQKL 104 (108)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 4778888877665 7899998889999999998765
No 86
>PLN00119 endoglucanase
Probab=23.68 E-value=1.4e+02 Score=34.49 Aligned_cols=63 Identities=13% Similarity=0.112 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhhccceeeecCCCCCCCCCCCcccccCCCCCcccchhhHHHHHHHHHHhcccCCchhHHHHHHH
Q 005721 179 LHKTISMFFMDIVNSSHTYATGGTSVGEFWSDPKRLASNLDSNTEESCTTYNMLKVSRHLFRWTKEIAYADYYERS 254 (681)
Q Consensus 179 ~y~~aa~~f~d~v~~~h~y~tGG~s~~E~f~~p~~l~~~l~~~~~EtCas~nmlkl~~~Lf~~tgd~~YaD~~Era 254 (681)
+++++|+..|+...+++..-....... ...|+++.-.=+++.-+-.||+.|||..|.++++..
T Consensus 203 ~lL~~Ak~~y~fA~~~~g~y~~~~~~~-------------~g~Y~ss~~~DEl~WAAawLY~aTgd~~Yl~~~~~~ 265 (489)
T PLN00119 203 ILIGHAKDLFEFAKAHPGLYQNSIPNA-------------GGFYASSGYEDELLWAAAWLHRATNDQTYLDYLTQA 265 (489)
T ss_pred HHHHHHHHHHHHHHhCCCcccCCCCCC-------------CCCCCCCchhhHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 558899999999887654211100000 112344444457888888999999999999987743
No 87
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=23.42 E-value=4.1e+02 Score=23.21 Aligned_cols=43 Identities=9% Similarity=0.110 Sum_probs=32.6
Q ss_pred CCCcceEEEeeccCCCCCeEEEeecCCcceEEEEe-eccCCCCcEEEE
Q 005721 575 AQGSSVFHLVAGLDGGDRTVSLESETYKGCFVYTA-VNLQSSESTKLG 621 (681)
Q Consensus 575 ~~~~s~f~~vpgl~g~~~~vsle~~~~pg~~~~~~-~~~~~g~~~~~~ 621 (681)
.....+|+|+| .| +|++.|.+. ..|..|-+. .+...|+.|.+-
T Consensus 48 ~~~~Q~W~i~~--~~-~g~y~I~n~-~s~~~Ldv~~~~~~~g~~v~~~ 91 (105)
T PF14200_consen 48 GNDNQQWKIEP--VG-DGYYRIRNK-NSGKVLDVAGGSTANGTNVQQW 91 (105)
T ss_dssp SSGGGEEEEEE--ST-TSEEEEEET-STTEEEEEGGGSSSTTEBEEEE
T ss_pred CCcCcEEEEEE--ec-CCeEEEEEC-CCCcEEEECCCCCCCCCEEEEE
Confidence 36779999998 44 589999999 668888753 445568888874
No 88
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=23.36 E-value=4.4e+02 Score=22.00 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=17.7
Q ss_pred eeeEEEEeccCCccCCCcEEEECCeecCCC
Q 005721 372 LTTSLNLRIPTWTSSNGAKATLNGQDLPLP 401 (681)
Q Consensus 372 ~~ftL~LRIP~Wa~~~~~~v~VNG~~~~~~ 401 (681)
.++.|.+--|+ +.+|++||+++...
T Consensus 38 ~~~~i~iGna~-----~v~v~~nG~~~~~~ 62 (77)
T PF13464_consen 38 EPFRIRIGNAG-----AVEVTVNGKPVDLL 62 (77)
T ss_pred CCEEEEEeCCC-----cEEEEECCEECCCC
Confidence 45555554443 68999999999863
No 89
>smart00125 IL1 Interleukin-1 homologues. Cytokines with various biological functions. Interluekin 1 alpha and beta are also known as hematopoietin and catabolin.
Probab=23.09 E-value=50 Score=31.98 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=20.6
Q ss_pred CeEEEeecCCcceEEEEeeccCCCCcEEEE
Q 005721 592 RTVSLESETYKGCFVYTAVNLQSSESTKLG 621 (681)
Q Consensus 592 ~~vsle~~~~pg~~~~~~~~~~~g~~~~~~ 621 (681)
.+.+|||+.+||||+.... .....|.+.
T Consensus 106 ~~~~FeSaa~PgWfIsTs~--~~~~PV~l~ 133 (147)
T smart00125 106 NKVEFESAAHPNWFISTSQ--EEDKPVFLG 133 (147)
T ss_pred CceEEEEccCCCcEEEecc--ccCceEEee
Confidence 4899999999999998641 234456665
No 90
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=21.48 E-value=1.7e+02 Score=27.44 Aligned_cols=32 Identities=28% Similarity=0.493 Sum_probs=21.9
Q ss_pred EEEEeccCCccCCCcEEEECCeecCCCCCCCEEEEEeecCCCCEEEEEecce
Q 005721 375 SLNLRIPTWTSSNGAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQLPLT 426 (681)
Q Consensus 375 tL~LRIP~Wa~~~~~~v~VNG~~~~~~~~ggy~~I~R~W~~GD~V~L~LPm~ 426 (681)
+...=||.|+. ++||..|+|+ .|++.|.-+..
T Consensus 20 ~~~~~ip~wa~-----------------~~~F~sIt~t---~eelsivc~~~ 51 (128)
T COG3603 20 DAGSAIPAWAD-----------------GPGFWSITRT---PEELSIVCLAD 51 (128)
T ss_pred ccCCcCccccC-----------------CCceEEEEcC---CceEEEEeecc
Confidence 34456899987 4789999975 56666655443
No 91
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=21.10 E-value=1.1e+02 Score=24.76 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=17.5
Q ss_pred CcEEEECCeecCCCCCCCEEEEEeecCCCCEEEEE
Q 005721 388 GAKATLNGQDLPLPSPGNFLSVTKTWSSDDKLTIQ 422 (681)
Q Consensus 388 ~~~v~VNG~~~~~~~~ggy~~I~R~W~~GD~V~L~ 422 (681)
...+.+||+-+.... |.. ..-++||+|+|-
T Consensus 31 ~vav~vNg~iv~r~~---~~~--~~l~~gD~vei~ 60 (66)
T PRK05659 31 RVAVEVNGEIVPRSQ---HAS--TALREGDVVEIV 60 (66)
T ss_pred eEEEEECCeEeCHHH---cCc--ccCCCCCEEEEE
Confidence 467788887554221 111 112689999875
Done!