BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005722
(681 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q10CQ8|PHYC_ORYSJ Phytochrome C OS=Oryza sativa subsp. japonica GN=PHYC PE=2 SV=1
Length = 1137
Score = 1043 bits (2697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/689 (72%), Positives = 581/689 (84%), Gaps = 12/689 (1%)
Query: 2 SSKSTNKTNYSRSSSARSKQNARVAAQTSIDAKLAEDFDESD--FDYSTSVNISSSTSNV 59
SS+S N+ SRSSSARSK +ARV AQT +DA+L +F+ S FDYS+SV +++ S
Sbjct: 3 SSRSNNRATCSRSSSARSKHSARVVAQTPMDAQLHAEFEGSQRHFDYSSSVG-AANRSGA 61
Query: 60 PSSTVSAYLQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDA 119
+S VSAYLQ +QRGR +QPFGC++AV + F +L YSENA EMLDL PHAVP I+Q++A
Sbjct: 62 TTSNVSAYLQNMQRGRFVQPFGCLLAVHPETFALLAYSENAAEMLDLTPHAVPTIDQREA 121
Query: 120 LTLGIDVRTLFTSSGAAALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDL 179
L +G DVRTLF S ALQKAA FG+VNLLNPIL+H +TSGKPFYAI+HRIDVGLVIDL
Sbjct: 122 LAVGTDVRTLFRSHSFVALQKAATFGDVNLLNPILVHARTSGKPFYAIMHRIDVGLVIDL 181
Query: 180 EPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVY 239
EPVNP D+PVTA GA+KSYKLAA+AI+RLQSLPSGN+SLLCDVLV EVS+LTGYDRVM Y
Sbjct: 182 EPVNPVDLPVTATGAIKSYKLAARAIARLQSLPSGNLSLLCDVLVREVSELTGYDRVMAY 241
Query: 240 KFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQ 299
KFHEDEHGEV+AEC+R DLEPYLG HYPATDIPQASRFL MKNKVRMICDC A PVK+IQ
Sbjct: 242 KFHEDEHGEVIAECKRSDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCSATPVKIIQ 301
Query: 300 DKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTIN----EAEDELDNDQEQGR 355
D L QP+S+CGSTLRAPHGCHA+YM +MGS+ASLVMSVTIN + D + Q +GR
Sbjct: 302 DDSLTQPISICGSTLRAPHGCHAQYMASMGSVASLVMSVTINEDEDDDGDTGSDQQPKGR 361
Query: 356 KLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDM 415
KLWGL+VCHHTSPRFVPFPLRYACEFL+QVFG+Q+NKEVEL+AQ +E+HILRTQT+LCDM
Sbjct: 362 KLWGLMVCHHTSPRFVPFPLRYACEFLLQVFGIQINKEVELAAQAKERHILRTQTLLCDM 421
Query: 416 LLRDSPVGIVTQTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGST 475
LLRD+PVGI TQ+PNVMDLVKCDGAALYY+ +LW+LG TP+E +IK+I WL EYH GST
Sbjct: 422 LLRDAPVGIFTQSPNVMDLVKCDGAALYYQNQLWVLGSTPSEAEIKNIVAWLQEYHDGST 481
Query: 476 GLSTDSLVEAGYPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDS-GGK 534
GLSTDSLVEAGYPGA ALGD VCG+AA+KI+SKDF+FWFRSHTAKEIKWGGAKH+
Sbjct: 482 GLSTDSLVEAGYPGAAALGDVVCGMAAIKISSKDFIFWFRSHTAKEIKWGGAKHEPIDAD 541
Query: 535 DGGRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVA---EDSKMIV 591
D GRKMHPRSSFKAFLEVVK RS+PWEDVEMDAIHSLQLILRGSLQDE A ++K IV
Sbjct: 542 DNGRKMHPRSSFKAFLEVVKWRSVPWEDVEMDAIHSLQLILRGSLQDEDANKNNNAKSIV 601
Query: 592 NVPSVD-DRIEKIDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQ 650
PS D +I+ + ELR +TNEMVRLIETA PILAVD +G++NGWN+KAAELTGL V +
Sbjct: 602 TAPSDDMKKIQGLLELRTVTNEMVRLIETATAPILAVDITGSINGWNNKAAELTGLPVME 661
Query: 651 AIGTALVDLVAGDSVDVVKNMLSSAFLAI 679
AIG LVDLV DSV+VVK +L+SA I
Sbjct: 662 AIGKPLVDLVIDDSVEVVKQILNSALQGI 690
>sp|A2XM23|PHYC_ORYSI Phytochrome C OS=Oryza sativa subsp. indica GN=PHYC PE=2 SV=2
Length = 1137
Score = 1039 bits (2686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/689 (72%), Positives = 580/689 (84%), Gaps = 12/689 (1%)
Query: 2 SSKSTNKTNYSRSSSARSKQNARVAAQTSIDAKLAEDFDESD--FDYSTSVNISSSTSNV 59
SS+S N+ SRSSSARSK +ARV AQT +DA+L +F+ S FDYS+SV +++ S
Sbjct: 3 SSRSNNRATCSRSSSARSKHSARVVAQTPMDAQLHAEFEGSQRHFDYSSSVG-AANRSGA 61
Query: 60 PSSTVSAYLQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDA 119
+S VSAYLQ +QRGR +QPFGC++AV + F +L YSENA EMLDL PHAVP I+Q++A
Sbjct: 62 TTSNVSAYLQNMQRGRFVQPFGCLLAVHPETFALLAYSENAAEMLDLTPHAVPTIDQREA 121
Query: 120 LTLGIDVRTLFTSSGAAALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDL 179
L +G DVRTLF S ALQKAA FG+VNLLNPIL+H +TSGKPFYAI+HRIDVGLVIDL
Sbjct: 122 LAVGTDVRTLFRSHSFVALQKAATFGDVNLLNPILVHARTSGKPFYAIMHRIDVGLVIDL 181
Query: 180 EPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVY 239
EPVNP D+PVTA GA+KSYKLAA+AI+RLQSLPSGN+SLLCDVLV EVS+LTGYDRVM Y
Sbjct: 182 EPVNPVDLPVTATGAIKSYKLAARAIARLQSLPSGNLSLLCDVLVREVSELTGYDRVMAY 241
Query: 240 KFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQ 299
KFHEDEHGEV+AEC+R DLEPYLG HYPATDIPQASRFL MKNKVRMICDC A PVK+IQ
Sbjct: 242 KFHEDEHGEVIAECKRSDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCSATPVKIIQ 301
Query: 300 DKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTIN----EAEDELDNDQEQGR 355
D L QP+S+CGSTLRAPHGCHA+YM +MGS+ASLVMSVTIN + D + Q +GR
Sbjct: 302 DDSLTQPISICGSTLRAPHGCHAQYMASMGSVASLVMSVTINEDEDDDGDTGSDQQPKGR 361
Query: 356 KLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDM 415
KLWGL+VCHHTSPRFVPFPLRYACEFL+QVFG+Q+NKEVEL+AQ +E+HILRTQT+LCDM
Sbjct: 362 KLWGLMVCHHTSPRFVPFPLRYACEFLLQVFGIQINKEVELAAQAKERHILRTQTLLCDM 421
Query: 416 LLRDSPVGIVTQTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGST 475
LLRD+PVGI TQ+PNVMDLVKCDGAALYY+ +LW+LG TP+E +IK+I WL EYH GST
Sbjct: 422 LLRDAPVGIFTQSPNVMDLVKCDGAALYYQNQLWVLGSTPSEAEIKNIVAWLQEYHDGST 481
Query: 476 GLSTDSLVEAGYPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDS-GGK 534
GLSTDSLVEAGYPGA ALGD V G+AA+KI+SKDF+FWFRSHTAKEIKWGGAKH+
Sbjct: 482 GLSTDSLVEAGYPGAAALGDVVYGMAAIKISSKDFIFWFRSHTAKEIKWGGAKHEPIDAD 541
Query: 535 DGGRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVA---EDSKMIV 591
D GRKMHPRSSFKAFLEVVK RS+PWEDVEMDAIHSLQLILRGSLQDE A ++K IV
Sbjct: 542 DNGRKMHPRSSFKAFLEVVKWRSVPWEDVEMDAIHSLQLILRGSLQDEDANKNNNAKSIV 601
Query: 592 NVPSVD-DRIEKIDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQ 650
PS D +I+ + ELR +TNEMVRLIETA PILAVD +G++NGWN+KAAELTGL V +
Sbjct: 602 TAPSDDMKKIQGLLELRTVTNEMVRLIETATAPILAVDITGSINGWNNKAAELTGLPVME 661
Query: 651 AIGTALVDLVAGDSVDVVKNMLSSAFLAI 679
AIG LVDLV DSV+VVK +L+SA I
Sbjct: 662 AIGKPLVDLVIDDSVEVVKQILNSALQGI 690
>sp|P14714|PHYC_ARATH Phytochrome C OS=Arabidopsis thaliana GN=PHYC PE=1 SV=1
Length = 1111
Score = 995 bits (2572), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/673 (68%), Positives = 572/673 (84%), Gaps = 9/673 (1%)
Query: 9 TNYSRSSSARSKQNARVAAQTSIDAKLAEDFDESD--FDYSTSVNIS--SSTSNVPSSTV 64
+N SRS S RS+QN+RV++Q +DAKL +F+ES+ FDYS S+N++ SS+ +PSS V
Sbjct: 3 SNTSRSCSTRSRQNSRVSSQVLVDAKLHGNFEESERLFDYSASINLNMPSSSCEIPSSAV 62
Query: 65 SAYLQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGI 124
S YLQ++QRG LIQPFGC+I VDE+N V+ +SEN EML L PH VP++EQ++ALT+G
Sbjct: 63 STYLQKIQRGMLIQPFGCLIVVDEKNLKVIAFSENTQEMLGLIPHTVPSMEQREALTIGT 122
Query: 125 DVRTLFTSSGAAALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNP 184
DV++LF S G +AL+KA +FGE+++LNPI +HC++S KPFYAILHRI+ GLVIDLEPV+P
Sbjct: 123 DVKSLFLSPGCSALEKAVDFGEISILNPITLHCRSSSKPFYAILHRIEEGLVIDLEPVSP 182
Query: 185 DDVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHED 244
D+VPVTAAGAL+SYKLAAK+ISRLQ+LPSGN+ LLCD LV EVS+LTGYDRVMVYKFHED
Sbjct: 183 DEVPVTAAGALRSYKLAAKSISRLQALPSGNMLLLCDALVKEVSELTGYDRVMVYKFHED 242
Query: 245 EHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLD 304
HGEV+AEC R D+EPYLG HY ATDIPQASRFL M+NKVRMICDC A PVKV+QDK L
Sbjct: 243 GHGEVIAECCREDMEPYLGLHYSATDIPQASRFLFMRNKVRMICDCSAVPVKVVQDKSLS 302
Query: 305 QPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAE-DELDNDQEQGRKLWGLVVC 363
QP+SL GSTLRAPHGCHA+YM NMGS+ASLVMSVTIN ++ DE++ D + GR LWGLVVC
Sbjct: 303 QPISLSGSTLRAPHGCHAQYMSNMGSVASLVMSVTINGSDSDEMNRDLQTGRHLWGLVVC 362
Query: 364 HHTSPRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRDSPVG 423
HH SPRFVPFPLRYACEFL QVFGVQ+NKE E + L+EK IL+TQ+VLCDML R++P+G
Sbjct: 363 HHASPRFVPFPLRYACEFLTQVFGVQINKEAESAVLLKEKRILQTQSVLCDMLFRNAPIG 422
Query: 424 IVTQTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLV 483
IVTQ+PN+MDLVKCDGAALYYR LW LGVTPTE QI+D+ +W+L+ H G+TG +T+SL+
Sbjct: 423 IVTQSPNIMDLVKCDGAALYYRDNLWSLGVTPTETQIRDLIDWVLKSHGGNTGFTTESLM 482
Query: 484 EAGYPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGGRKMHPR 543
E+GYP A LG+++CG+AAV I+ KDFLFWFRS TAK+IKWGGA+HD +D G++MHPR
Sbjct: 483 ESGYPDASVLGESICGMAAVYISEKDFLFWFRSSTAKQIKWGGARHDPNDRD-GKRMHPR 541
Query: 544 SSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVAEDSKMIVNVPSVDDRIEKI 603
SSFKAF+E+V+ +S+PW+D+EMDAI+SLQLI++GSLQ+ E SK +V+VP VD+R++K+
Sbjct: 542 SSFKAFMEIVRWKSVPWDDMEMDAINSLQLIIKGSLQE---EHSKTVVDVPLVDNRVQKV 598
Query: 604 DELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGD 663
DEL +I NEMVRLI+TAAVPI AVDASG +NGWNSKAAE+TGL V+QAIG + DLV D
Sbjct: 599 DELCVIVNEMVRLIDTAAVPIFAVDASGVINGWNSKAAEVTGLAVEQAIGKPVSDLVEDD 658
Query: 664 SVDVVKNMLSSAF 676
SV+ VKNML+ A
Sbjct: 659 SVETVKNMLALAL 671
>sp|P93528|PHYC_SORBI Phytochrome C OS=Sorghum bicolor GN=PHYC PE=2 SV=1
Length = 1135
Score = 985 bits (2547), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/689 (73%), Positives = 574/689 (83%), Gaps = 11/689 (1%)
Query: 1 MSSKSTNKTNYSRSSSARSKQNARVAAQTSIDAKLAEDFDES--DFDYSTSVNISSSTSN 58
MSS N+ SRSSSARS+ +ARV AQT +DA+L +F+ S +FDYS+SV+ + S
Sbjct: 1 MSSPLNNRGTCSRSSSARSRHSARVVAQTPVDAQLHAEFESSQRNFDYSSSVSAAIRPS- 59
Query: 59 VPSSTVSAYLQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQD 118
V +STVS Y Q +QRG IQPFGC++AV FT+L YSENAPEMLDL PHAVP I+Q+D
Sbjct: 60 VSTSTVSTYHQTMQRGLYIQPFGCLLAVHPDTFTLLAYSENAPEMLDLTPHAVPTIDQRD 119
Query: 119 ALTLGIDVRTLFTSSGAAALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVID 178
AL +G DVRTLF S + AL KAA FGEVNLLNPIL+H +TSGKPFYAILHRIDVGLVID
Sbjct: 120 ALAVGADVRTLFRSQSSVALHKAATFGEVNLLNPILVHARTSGKPFYAILHRIDVGLVID 179
Query: 179 LEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMV 238
LEPVNP DVPVTAAGALKSYKLAAKAISRLQSLPSGN+SLLCDVLV EVS+LTGYDRVM
Sbjct: 180 LEPVNPVDVPVTAAGALKSYKLAAKAISRLQSLPSGNLSLLCDVLVREVSELTGYDRVMA 239
Query: 239 YKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVI 298
YKFHEDEHGEV++ECRR DLEPYLG HYPATDIPQASRFL MKNKVRMICDC A VK+I
Sbjct: 240 YKFHEDEHGEVISECRRSDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCSATLVKII 299
Query: 299 QDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTI-NEAEDELD---NDQEQG 354
QD L QPLSLCGSTLRA HGCHA+YM NMGS+ASLVMSVTI N+ E+++D + Q +G
Sbjct: 300 QDDSLAQPLSLCGSTLRASHGCHAQYMANMGSVASLVMSVTISNDEEEDVDTGSDQQPKG 359
Query: 355 RKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCD 414
RKLWGLVVCHHTSPRFVPFPLRYACEFL+QVFG+Q+NKEVEL+AQ +E+HILRTQT+L D
Sbjct: 360 RKLWGLVVCHHTSPRFVPFPLRYACEFLLQVFGIQLNKEVELAAQAKERHILRTQTLLWD 419
Query: 415 MLLRDSPVGIVTQTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGS 474
MLLRD+PVGI TQ+PNVMDLVKCDG ALYY+ +L LLG TP+E +IK IA WL E H GS
Sbjct: 420 MLLRDAPVGIFTQSPNVMDLVKCDGVALYYQNQLLLLGSTPSESEIKSIATWLQENHDGS 479
Query: 475 TGLSTDSLVEAGYPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDS-GG 533
TGLSTDSLVEAGYPGA AL + VCG+AA+KI+SKDF+FWFRSHT KEIKWGGAKH+
Sbjct: 480 TGLSTDSLVEAGYPGAAALREVVCGMAAIKISSKDFIFWFRSHTTKEIKWGGAKHEPVDA 539
Query: 534 KDGGRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVA--EDSKMIV 591
D GRKMHPRSSFKAFLEVVK RS+PWEDVEMDAIHSLQLILRGSLQDE A + + IV
Sbjct: 540 DDNGRKMHPRSSFKAFLEVVKWRSVPWEDVEMDAIHSLQLILRGSLQDEDANRNNVRSIV 599
Query: 592 NVPSVD-DRIEKIDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQ 650
P D +I+ + ELR +TNEMVRLIETA P+LAVD +GN+NGWN+KAAELTGL V +
Sbjct: 600 KAPPDDTKKIQGLLELRTVTNEMVRLIETATAPVLAVDIAGNINGWNNKAAELTGLPVME 659
Query: 651 AIGTALVDLVAGDSVDVVKNMLSSAFLAI 679
AIG L+DLV DS++VVK +L SA I
Sbjct: 660 AIGRPLIDLVVVDSIEVVKRILDSALQGI 688
>sp|Q40762|PHY_PICAB Phytochrome OS=Picea abies PE=2 SV=1
Length = 1136
Score = 965 bits (2495), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 482/674 (71%), Positives = 550/674 (81%), Gaps = 17/674 (2%)
Query: 20 KQNARVAAQTSIDAKLAEDFDES--DFDYSTSVNISSSTSNVPSSTVSAYLQRVQRGRLI 77
K +ARV QT +DAKL +F+ S FDY+ S++IS +S+VPS TV AYLQR+Q+ LI
Sbjct: 23 KHSARVITQTPVDAKLQAEFEGSVHSFDYTKSIDISGDSSSVPSETVKAYLQRLQKEMLI 82
Query: 78 QPFGCMIAVDEQNFTVLGYSENAPEMLDL--APHAVPNIEQQDA---------LTLGIDV 126
QPFGC++AV+E + V+GYSENAPEMLD+ HAVP+I Q L +G+D
Sbjct: 83 QPFGCVLAVEEGSCAVVGYSENAPEMLDVVGGAHAVPSIGGQQQEGGGGGGGLLRIGMDA 142
Query: 127 RTLFTSSGAAALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDD 186
RTLF + AAALQKAA F +++L+NPI + C SGKPFYAIL+RID GLVID EPV P D
Sbjct: 143 RTLFKPASAAALQKAATFADMHLVNPIFVRCNRSGKPFYAILNRIDAGLVIDFEPVMPSD 202
Query: 187 VPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEH 246
VPV+AAGAL+SYKLAAKAISRLQSLP G+I LLCD +V EV +LTGYDRVM Y+FHEDEH
Sbjct: 203 VPVSAAGALQSYKLAAKAISRLQSLPGGDIRLLCDTVVQEVRELTGYDRVMAYRFHEDEH 262
Query: 247 GEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQP 306
GEVVAE RRPDLEPYLG HYPATDIPQASRFL MKN+VRMICDC APPV VIQDK+L QP
Sbjct: 263 GEVVAEMRRPDLEPYLGLHYPATDIPQASRFLFMKNRVRMICDCCAPPVNVIQDKRLRQP 322
Query: 307 LSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQG----RKLWGLVV 362
LSLCGSTLRAPHGCHA+YM NMGSIASLVMSVT NE D+ + +Q RKLWGLVV
Sbjct: 323 LSLCGSTLRAPHGCHAQYMANMGSIASLVMSVTTNENGDDSEGGGQQQPQNRRKLWGLVV 382
Query: 363 CHHTSPRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRDSPV 422
CHHTSPR +PFPLRYACEFL+QVFG+Q+NKEVEL+AQLREKHILR Q VLCDMLLRD+PV
Sbjct: 383 CHHTSPRVIPFPLRYACEFLMQVFGIQLNKEVELAAQLREKHILRVQPVLCDMLLRDAPV 442
Query: 423 GIVTQTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSL 482
GIV+QTPN+MDLVKCDGAAL Y +LWLLG TPTE QI DIA+WLLE+HR STGLSTDSL
Sbjct: 443 GIVSQTPNIMDLVKCDGAALLYGKRLWLLGTTPTEAQILDIADWLLEHHRDSTGLSTDSL 502
Query: 483 VEAGYPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGGRKMHP 542
EAGYPGA +LGDAVCGIAA +ITSKDFLFWFRSHTAKEI WGGAKHD KD GR+MHP
Sbjct: 503 AEAGYPGAASLGDAVCGIAAARITSKDFLFWFRSHTAKEIIWGGAKHDPNDKDDGRRMHP 562
Query: 543 RSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVAEDSKMIVNVPSVDDRIEK 602
RSSFKAFLEVVK+RSLPWEDVEMDAIHSLQLILR S D DSK +++ D R++
Sbjct: 563 RSSFKAFLEVVKRRSLPWEDVEMDAIHSLQLILRDSFHDIDDSDSKTMIHARLNDLRLQG 622
Query: 603 IDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAG 662
IDEL +TNEMVRLIETA VPILA+D++G VNGWN+KAAELTGL D+ IG L+DLV
Sbjct: 623 IDELSAVTNEMVRLIETATVPILAIDSNGLVNGWNTKAAELTGLLADEVIGRPLIDLVQH 682
Query: 663 DSVDVVKNMLSSAF 676
DSV++VK ML A
Sbjct: 683 DSVEIVKKMLYLAL 696
>sp|Q39557|PHY2_CERPU Phytochrome 2 OS=Ceratodon purpureus GN=PHY2 PE=3 SV=1
Length = 1121
Score = 959 bits (2478), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/674 (68%), Positives = 545/674 (80%), Gaps = 9/674 (1%)
Query: 5 STNKTNYSRSSSARSKQNARVAAQTSIDAKLAEDFDES-----DFDYSTSVNISSSTSNV 59
S K YS ++SA+SK + RVA QT+ DA L ++ S FDYS SV S +V
Sbjct: 2 SAPKKTYSSTTSAKSKHSVRVA-QTTADAALEAVYEMSGDSGDSFDYSKSVG--QSAESV 58
Query: 60 PSSTVSAYLQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDA 119
P+ V+AYLQR+QRG LIQ FGCM+AV+E NF V+ YSENA E LDL P AVP++ + D
Sbjct: 59 PAGAVTAYLQRMQRGGLIQTFGCMVAVEEPNFCVIAYSENASEFLDLMPQAVPSMGEMDV 118
Query: 120 LTLGIDVRTLFTSSGAAALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDL 179
L +G D+RTLFT S AAL+KAA +++LLNPI +HC+ SGKP YAI HRID+G+VID
Sbjct: 119 LGIGTDIRTLFTPSSGAALEKAAATQDISLLNPITVHCRRSGKPLYAIAHRIDIGIVIDF 178
Query: 180 EPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVY 239
E V +DV V+AAGAL+S+KLAAKAI+RLQ+LP G+I LLCD +V EV +LTGYDRVM Y
Sbjct: 179 EAVKMNDVSVSAAGALQSHKLAAKAITRLQALPGGDIGLLCDTVVEEVRELTGYDRVMAY 238
Query: 240 KFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQ 299
KFHEDEHGEVVAE RR DLEPYLG HYPATDIPQASRFL MKN+VR+I DC A PVK+IQ
Sbjct: 239 KFHEDEHGEVVAEIRRMDLEPYLGLHYPATDIPQASRFLFMKNRVRVIADCCASPVKLIQ 298
Query: 300 DKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWG 359
D + QP+SL GSTLRAPHGCHA+YM NMGSIASLVM+V IN+ E++ ++GRKLWG
Sbjct: 299 DPDIKQPVSLAGSTLRAPHGCHAQYMGNMGSIASLVMAVIINDNEEDSRGAIQRGRKLWG 358
Query: 360 LVVCHHTSPRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRD 419
LVVCHHTSPR VPFPLR ACEFL+QVFG+Q+N EVEL+AQLREKHILRTQT+LCDMLLRD
Sbjct: 359 LVVCHHTSPRTVPFPLRSACEFLMQVFGMQLNMEVELAAQLREKHILRTQTLLCDMLLRD 418
Query: 420 SPVGIVTQTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLST 479
+P+GIV+QTPN+MDLVKCDGAALYY + WLLG TPTE QIKDIAEWLLEYH+ STGLST
Sbjct: 419 APIGIVSQTPNIMDLVKCDGAALYYGKRFWLLGTTPTENQIKDIAEWLLEYHKDSTGLST 478
Query: 480 DSLVEAGYPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGGRK 539
DSL +A YPGA LGDAVCG+AA KIT+KDFLFWFRSHTAKE+KWGGAKHD KD GRK
Sbjct: 479 DSLADANYPGAHLLGDAVCGMAAAKITAKDFLFWFRSHTAKEVKWGGAKHDPAEKDDGRK 538
Query: 540 MHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVAEDSKMIVNVPSVDDR 599
MHPRSSFKAFLEVVK+RSLPWEDVEMDAIHSLQLILRGS QD D+K +++ D +
Sbjct: 539 MHPRSSFKAFLEVVKRRSLPWEDVEMDAIHSLQLILRGSFQDIDDSDTKTMIHARLNDLK 598
Query: 600 IEKIDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALV-D 658
+ +DEL ++ NEMVRLIETA PILAVD++G +NGWN+K A +TGL V +A+G +LV D
Sbjct: 599 LHGMDELSVVANEMVRLIETATAPILAVDSTGMINGWNAKIAHVTGLPVSEAMGRSLVKD 658
Query: 659 LVAGDSVDVVKNML 672
LV +SV VV+ +L
Sbjct: 659 LVLDESVVVVERLL 672
>sp|P36505|PHY1_PHYPA Phytochrome 1 OS=Physcomitrella patens subsp. patens GN=PHY1 PE=2
SV=1
Length = 1132
Score = 933 bits (2412), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/656 (68%), Positives = 528/656 (80%), Gaps = 7/656 (1%)
Query: 27 AQTSIDAKLAEDFDES-----DFDYSTSVNISSSTSNVPSSTVSAYLQRVQRGRLIQPFG 81
AQT+ DA L F++S FDYS SV+ S++ S +PS V+AYLQR+QRG L Q FG
Sbjct: 24 AQTTADAALQAVFEKSGDSGDSFDYSKSVSKSTAES-LPSGAVTAYLQRMQRGGLTQSFG 82
Query: 82 CMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAALQKA 141
CMIAV+ F V+ YSENAPE+LDL P AVP++ + D L +G DVRTLFT+S A+L+KA
Sbjct: 83 CMIAVEGTGFRVIAYSENAPEILDLVPQAVPSVGEMDTLRIGTDVRTLFTASSVASLEKA 142
Query: 142 ANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGALKSYKLA 201
A E++LLNPI ++C+ SGK YAI HRID+G+VID E V DD V+AAGAL+S+KLA
Sbjct: 143 AEAQEMSLLNPITVNCRRSGKQLYAIAHRIDIGIVIDFEAVKTDDHLVSAAGALQSHKLA 202
Query: 202 AKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPY 261
AKAI+RLQ+LP GNI LLCD +V EV +LTGYDRVM Y+FHEDEHGEVVAE RR DLEPY
Sbjct: 203 AKAITRLQALPGGNIGLLCDTVVEEVRELTGYDRVMAYRFHEDEHGEVVAEIRRADLEPY 262
Query: 262 LGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCH 321
LG HYP TDIPQASRFL MKNKVR+I DC APPVKVIQD L QP+SL GSTLR+PHGCH
Sbjct: 263 LGLHYPGTDIPQASRFLFMKNKVRIIADCSAPPVKVIQDPTLRQPVSLAGSTLRSPHGCH 322
Query: 322 ARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVPFPLRYACEF 381
A+YM NMGSIASLVM+V IN+ E++ ++GRKLWGLVVCHHTSPR VPFPLR AC F
Sbjct: 323 AQYMGNMGSIASLVMAVIINDNEEDSHGSVQRGRKLWGLVVCHHTSPRTVPFPLRSACGF 382
Query: 382 LIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRDSPVGIVTQTPNVMDLVKCDGAA 441
L+QVFG+Q+N EVE +AQLREKHILRTQT+LCDMLLRD+P+GIV+Q PN+MDLVKCDGAA
Sbjct: 383 LMQVFGLQLNMEVESAAQLREKHILRTQTLLCDMLLRDAPIGIVSQIPNIMDLVKCDGAA 442
Query: 442 LYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAGYPGALALGDAVCGIA 501
LYY WLLG TPTE QIKDIAEWLLEYH+ STGLSTDSL +A YP A LGDAVCG+A
Sbjct: 443 LYYGKPFWLLGTTPTESQIKDIAEWLLEYHKDSTGLSTDSLADANYPAAHLLGDAVCGMA 502
Query: 502 AVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGGRKMHPRSSFKAFLEVVKQRSLPWE 561
A KIT+KDFLFWFRSHTAKEIKWGGAKHD G GRKMHPRSSFKAFLEVVK+RSLPWE
Sbjct: 503 AAKITAKDFLFWFRSHTAKEIKWGGAKHDPGENHDGRKMHPRSSFKAFLEVVKRRSLPWE 562
Query: 562 DVEMDAIHSLQLILRGSLQDEVAEDSKMIVNVPSVDDRIEKIDELRIITNEMVRLIETAA 621
DVEMDAIHSLQLILRGS QD D+K +++ D ++ +DEL ++ NEMVRLIETA
Sbjct: 563 DVEMDAIHSLQLILRGSFQDIADSDTKTMIHARLNDLKLHDMDELSVVANEMVRLIETAT 622
Query: 622 VPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALV-DLVAGDSVDVVKNMLSSAF 676
PILAVD++G +NGWN+K A++TGL V +A G +LV DLV +SV VV+ +L A
Sbjct: 623 APILAVDSNGMINGWNAKIAQVTGLPVSEAHGRSLVKDLVTDESVAVVERLLYLAL 678
>sp|Q01549|PHY1_SELMA Phytochrome 1 OS=Selaginella martensii GN=PHY1 PE=3 SV=1
Length = 1134
Score = 928 bits (2398), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/686 (66%), Positives = 550/686 (80%), Gaps = 17/686 (2%)
Query: 5 STNKTNYSRSSSARSKQNARVAAQTSIDAKLAEDFDES-----DFDYSTSVNISSSTS-N 58
ST K YS SSA+SK + RVA QT+ DAKL ++ES FDYS S+N + ST
Sbjct: 2 STTKLTYSSGSSAKSKHSVRVA-QTTADAKLHAVYEESGESGDSFDYSKSINATKSTGET 60
Query: 59 VPSSTVSAYLQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIE--Q 116
+P+ V+AYLQR+QRG L+QPFGCM+AV+E +F V+ +S+NA EMLDL P +VP++ Q
Sbjct: 61 IPAQAVTAYLQRMQRGGLVQPFGCMLAVEEGSFRVIAFSDNAGEMLDLMPQSVPSLGSGQ 120
Query: 117 QDALTLGIDVRTLFTSSGAAALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLV 176
QD LT+G D RTLFT++ +A + A ++++LNPI + KTS KPFYAI+HRIDVGLV
Sbjct: 121 QDVLTIGTDARTLFTAAASALEKAAGAV-DLSMLNPIWVQSKTSAKPFYAIVHRIDVGLV 179
Query: 177 IDLEPVNPDDVPV-TAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDR 235
+DLEPV D V +AAGAL+S+KLAAKAISRLQSLP G+I LLCD +V EV D+TGYD
Sbjct: 180 MDLEPVKASDTRVGSAAGALQSHKLAAKAISRLQSLPGGDIGLLCDTVVEEVRDVTGYDL 239
Query: 236 VMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPV 295
VM YKFHEDEHGEVVAE RR DLEPYLG HYPATDIPQASRFL MKN+VRMICDC APPV
Sbjct: 240 VMAYKFHEDEHGEVVAEIRRSDLEPYLGLHYPATDIPQASRFLFMKNRVRMICDCSAPPV 299
Query: 296 KVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAED----ELDNDQ 351
K+ QDK+L QP+SL GSTLRAPHGCHA+YM NMGS+ASLVM++ IN+ ++ Q
Sbjct: 300 KITQDKELRQPISLAGSTLRAPHGCHAQYMGNMGSVASLVMAMIINDNDEPSGGGGGGGQ 359
Query: 352 EQGRKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTV 411
+GR+LWGLVVCHHTSPR VPF LR ACEFL+QVFG+Q+N E ++A +REKHILRTQT+
Sbjct: 360 HKGRRLWGLVVCHHTSPRSVPF-LRSACEFLMQVFGLQLNMEAAVAAHVREKHILRTQTL 418
Query: 412 LCDMLLRDSPVGIVTQTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYH 471
LCDMLLRD+P+GIV+Q+PN+MDLVKCDGAALYY + WLLG+TP+E QIKDIAEWLLE+H
Sbjct: 419 LCDMLLRDAPIGIVSQSPNIMDLVKCDGAALYYGKRFWLLGITPSEAQIKDIAEWLLEHH 478
Query: 472 RGSTGLSTDSLVEAGYPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDS 531
+ STGLSTDSL +AGYPGA +LGD VCG+AA KIT+KDFLFWFRSHTAKE+KWGGAKHD
Sbjct: 479 KDSTGLSTDSLADAGYPGAASLGDEVCGMAAAKITAKDFLFWFRSHTAKEVKWGGAKHDP 538
Query: 532 GGKDGGRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVAEDSKMIV 591
KD GRKMHPRSSFKAFLEVVK+RSLPWEDVEMDAIHSLQLILRGS QD D+K ++
Sbjct: 539 DDKDDGRKMHPRSSFKAFLEVVKRRSLPWEDVEMDAIHSLQLILRGSFQDIDDSDTKTMI 598
Query: 592 NVPSVDDRIEKIDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQA 651
+ D +++ +DEL + NEMVRLIETA PILAVD+SG +NGWN+K A++TGL V +A
Sbjct: 599 HARLNDLKLQGMDELSTVANEMVRLIETATAPILAVDSSGFINGWNAKVADVTGLPVTEA 658
Query: 652 IGTALV-DLVAGDSVDVVKNMLSSAF 676
+G +L +LV +S D+V+ +L A
Sbjct: 659 MGRSLAKELVLHESADMVERLLYLAL 684
>sp|P93673|PHYA_LATSA Phytochrome type A OS=Lathyrus sativus GN=PHYA PE=3 SV=1
Length = 1124
Score = 914 bits (2362), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/683 (63%), Positives = 540/683 (79%), Gaps = 11/683 (1%)
Query: 5 STNKTNYSRSSSARSKQNARVAAQTSIDAKLAEDFDES--DFDYSTSVNISSSTS--NVP 60
ST + + S ++S RS+ +AR+ AQT++DAKL F+ES FDYS+ V +S S P
Sbjct: 2 STTRPSQSSNNSGRSRNSARIIAQTTVDAKLHATFEESGSSFDYSSWVRVSGSVDGDQQP 61
Query: 61 SST--VSAYLQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQD 118
S +AYL +QRG+ IQPFGC++A+DE+ V+ YSENAPEML + HAVP++
Sbjct: 62 RSNKVTTAYLNHIQRGKQIQPFGCLLALDEKTCKVVAYSENAPEMLTMVSHAVPSVGDHP 121
Query: 119 ALTLGIDVRTLFTSSGAAALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVID 178
AL +G D+RT+FT+ A+ALQKA F EV+LLNPIL+HCKTSGKPFYAI+HR+ L+ID
Sbjct: 122 ALGIGTDIRTVFTAPSASALQKALGFAEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIID 181
Query: 179 LEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMV 238
EPV P +VP+TAAGAL+SYKLAAKAI+RLQSL SG++ LCD +V EV +LTGYDRVM
Sbjct: 182 FEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLASGSMERLCDTMVQEVFELTGYDRVMA 241
Query: 239 YKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVI 298
YKFHED+HGEV+AE +P LEPYLG HYPATDIPQA+RFL MKNKVRMI DC A VKV+
Sbjct: 242 YKFHEDDHGEVIAEIAKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVKVL 301
Query: 299 QDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQ----EQG 354
QD+KL L+LCGSTLRAPH CH +YM NM SIASLVM+V +N+++++ D+ ++
Sbjct: 302 QDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNDSDEDGDSADAVLPQKK 361
Query: 355 RKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCD 414
++LWGLVVCH+T+PRFVPFPLRYACEFL QVF + VNKE+EL Q+ EK+ILRTQT+LCD
Sbjct: 362 KRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELEYQILEKNILRTQTLLCD 421
Query: 415 MLLRDSPVGIVTQTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGS 474
ML+RD+P+GIV+Q+PN+MDLVKCDGAAL+YR KLWLLG TPTE QI++IA W+ EYH S
Sbjct: 422 MLMRDAPLGIVSQSPNIMDLVKCDGAALFYRNKLWLLGATPTEYQIREIALWMSEYHTDS 481
Query: 475 TGLSTDSLVEAGYPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGK 534
TGLSTDSL++AG+PGAL+L D VCG+AAV+ITSKD +FWFRSHTA EI+WGGAKH+ G +
Sbjct: 482 TGLSTDSLLDAGFPGALSLSDTVCGMAAVRITSKDIVFWFRSHTAAEIRWGGAKHEPGEQ 541
Query: 535 DGGRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQD-EVAEDSKMIVNV 593
D GRKMHPRSSFKAFLEVVK RS+PW+D EMDAIHSLQLILR + +D ++ + + +N
Sbjct: 542 DDGRKMHPRSSFKAFLEVVKARSVPWKDFEMDAIHSLQLILRNASKDTDIIDLNTKAINT 601
Query: 594 PSVDDRIEKIDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIG 653
D +IE + EL +T+EMVRLIETA VPILAVD G VNGWN K AELTGL V +AIG
Sbjct: 602 RLNDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGTVNGWNIKIAELTGLPVGEAIG 661
Query: 654 TALVDLVAGDSVDVVKNMLSSAF 676
L+ LV S D+VK ML+ A
Sbjct: 662 KHLLTLVEDSSTDIVKKMLNLAL 684
>sp|P25848|PHY1_CERPU Light-sensor Protein kinase OS=Ceratodon purpureus GN=PHY1 PE=3
SV=3
Length = 1307
Score = 913 bits (2359), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/679 (65%), Positives = 538/679 (79%), Gaps = 10/679 (1%)
Query: 5 STNKTNYSRSSSARSKQNARVAAQTSIDAKLAEDFDES-----DFDYSTSVNISSSTSNV 59
S K YS ++SA+SK + RVA QT+ DA L ++ S FDYS SV S +V
Sbjct: 2 SATKKTYSSTTSAKSKHSVRVA-QTTADAALEAVYEMSGDSGDSFDYSKSVG--QSAESV 58
Query: 60 PSSTVSAYLQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDA 119
P+ V+AYLQR+QR LIQ FGCM+AV+E NF V+ YSENA E LDL P AVP++ + D
Sbjct: 59 PAGAVTAYLQRMQREGLIQNFGCMVAVEEPNFCVIAYSENASEFLDLIPQAVPSMGEMDV 118
Query: 120 LTLGIDVRTLFTSSGAAALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDL 179
L +G D+RTLFT S +AAL+KAA +++LLNPI +HC+ SGKP YAI HRID+G+VID
Sbjct: 119 LGIGTDIRTLFTPSSSAALEKAAATQDISLLNPITVHCRRSGKPLYAIAHRIDIGIVIDF 178
Query: 180 EPVNPDDVPVTAA-GALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMV 238
E V DVPV+AA GAL+S+KLAA+AI+RLQ+LP G+I LLCD +V EV +LTGYDRVM
Sbjct: 179 EAVKMIDVPVSAAAGALQSHKLAARAITRLQALPGGDIELLCDTIVEEVRELTGYDRVMA 238
Query: 239 YKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVI 298
+KFHEDEHGEVVAE RR DLEPY+G HYPATDIPQASRFL+MKN+VR+I DC A PVK+I
Sbjct: 239 FKFHEDEHGEVVAEIRRMDLEPYMGLHYPATDIPQASRFLLMKNRVRLIADCYASPVKLI 298
Query: 299 QDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLW 358
QD + QP+SL GSTLRAPHGCHA+YM NMGSIASLVM+V IN+ E+ ++GRKLW
Sbjct: 299 QDPDIRQPVSLAGSTLRAPHGCHAQYMGNMGSIASLVMAVIINDNEEYSRGAIQRGRKLW 358
Query: 359 GLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLR 418
GLVVC HTSPR VPFPLR CEFL+QVFG+Q+N VEL+AQLREKHILRTQT+LCDMLLR
Sbjct: 359 GLVVCQHTSPRTVPFPLRSVCEFLMQVFGMQLNLHVELAAQLREKHILRTQTLLCDMLLR 418
Query: 419 DSPVGIVTQTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLS 478
D+P+GIV+QTPN+MDLVKCDGAALYY ++WLLG TPTE QIK+IA+WLLE+H STGLS
Sbjct: 419 DAPIGIVSQTPNIMDLVKCDGAALYYGKRVWLLGTTPTENQIKEIADWLLEHHNDSTGLS 478
Query: 479 TDSLVEAGYPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGGR 538
TDSL +A YPGA LGDAVCG+AA KIT+KDFLFWFRSHTA E+KWGGAKHD KD GR
Sbjct: 479 TDSLADANYPGAHLLGDAVCGMAAAKITAKDFLFWFRSHTATEVKWGGAKHDPDEKDDGR 538
Query: 539 KMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVAEDSKMIVNVPSVDD 598
KMHPRSSFKAFLEVV +RS PWEDVEMDAIHSLQLILRGS +D D+K +++ D
Sbjct: 539 KMHPRSSFKAFLEVVNKRSPPWEDVEMDAIHSLQLILRGSFRDIADSDTKTMIHARLNDL 598
Query: 599 RIEKIDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALV- 657
+++ ++E + NEM R++ETAA PILAVD+ G +N WN+K A++TGL V++A+ +L
Sbjct: 599 KLQGVEERNALANEMSRVLETAAAPILAVDSRGMINAWNAKIAQVTGLPVEEAMHCSLTK 658
Query: 658 DLVAGDSVDVVKNMLSSAF 676
DLV +SV VV+ +LS A
Sbjct: 659 DLVLDESVVVVERLLSLAL 677
>sp|P33530|PHYA1_TOBAC Phytochrome A1 OS=Nicotiana tabacum GN=PHYA1 PE=3 SV=1
Length = 1124
Score = 908 bits (2346), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/671 (64%), Positives = 535/671 (79%), Gaps = 11/671 (1%)
Query: 17 ARSKQNARVAAQTSIDAKLAEDFDES--DFDYSTSVNISSSTSN--VPSS--TVSAYLQR 70
ARSK +AR+ AQT+IDAKL DF+ES FDYS+SV ++S + P S +AYL +
Sbjct: 14 ARSKHSARIIAQTTIDAKLHADFEESGDSFDYSSSVRVTSVAGDERKPKSDRVTTAYLNQ 73
Query: 71 VQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLF 130
+Q+G+ IQPFGC++A+DE+ F V+ +SENAPEML + HAVP++ + AL +G D+RT+F
Sbjct: 74 IQKGKFIQPFGCLLALDEKTFKVIAFSENAPEMLTMVSHAVPSVGELPALGIGTDIRTIF 133
Query: 131 TSSGAAALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVT 190
T AAALQKA FGEV+LLNP+L+HCKTSGKP+YAI+HR+ L+ID EPV P +VP+T
Sbjct: 134 TGPSAAALQKALGFGEVSLLNPVLVHCKTSGKPYYAIVHRVTGSLIIDFEPVKPYEVPMT 193
Query: 191 AAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVV 250
AAGAL+SYKLAAKAI+RLQ+LPSG++ LCD +V EV +LTGYDRVM YKFH+D+HGEVV
Sbjct: 194 AAGALQSYKLAAKAITRLQALPSGSMERLCDTMVQEVFELTGYDRVMTYKFHDDDHGEVV 253
Query: 251 AECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLC 310
AE +P L+PYLG HYPATDIPQA+RFL MKNKVRMICDC A VKV+QD+KL L+LC
Sbjct: 254 AEITKPGLDPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHVKVVQDEKLPFDLTLC 313
Query: 311 GSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDE---LDNDQEQGRK-LWGLVVCHHT 366
GSTLRAPH CH +YMENM SIASLVM+V +N+ ++E D+ Q Q RK LWGLVVCH+T
Sbjct: 314 GSTLRAPHYCHLQYMENMSSIASLVMAVVVNDGDEEGESSDSTQSQKRKRLWGLVVCHNT 373
Query: 367 SPRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRDSPVGIVT 426
+PRFVPFPLRYACEFL QVF + VNKE+EL +Q+ EK+ILRTQT+LCDML+R +P+GIV+
Sbjct: 374 TPRFVPFPLRYACEFLAQVFAIHVNKELELESQILEKNILRTQTLLCDMLMRVAPLGIVS 433
Query: 427 QTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAG 486
Q+PN+MDLVKCDGAAL Y+ K+ LG+TP++ Q+ DI WL EYH STGLSTDSL +AG
Sbjct: 434 QSPNIMDLVKCDGAALLYKNKIHRLGMTPSDFQLHDIVSWLSEYHTDSTGLSTDSLYDAG 493
Query: 487 YPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGGRKMHPRSSF 546
+PGALALGD VCG+AAV+I+ K +LFW+RSHTA E++WGGAKH+ G KD GRKMHPRSSF
Sbjct: 494 FPGALALGDVVCGMAAVRISDKGWLFWYRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSF 553
Query: 547 KAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVAEDSKM-IVNVPSVDDRIEKIDE 605
KAFLEVVK RS+PW+D EMDAIHSLQLILR + +D A DS I++ D +I+ + E
Sbjct: 554 KAFLEVVKTRSVPWKDYEMDAIHSLQLILRNASKDADAMDSNTNIIHTKLNDLKIDGLQE 613
Query: 606 LRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSV 665
L +T EMVRLIETA+VPI AVD G +NGWN+K AELTGL VD+AIG L+ LV SV
Sbjct: 614 LEAVTAEMVRLIETASVPIFAVDVDGQLNGWNTKIAELTGLPVDEAIGNHLLTLVEDSSV 673
Query: 666 DVVKNMLSSAF 676
D V ML A
Sbjct: 674 DTVSKMLELAL 684
>sp|O49934|PHYA_POPTM Phytochrome A OS=Populus tremuloides GN=PHYA PE=2 SV=1
Length = 1125
Score = 897 bits (2318), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/668 (64%), Positives = 530/668 (79%), Gaps = 14/668 (2%)
Query: 23 ARVAAQTSIDAKLAEDFDESDFDYSTSVNISSSTS----NVPSS--TVSAYLQRVQRGRL 76
AR+ AQT++DAKL DF+ES + S ++ + S P S +AYL +Q+G+L
Sbjct: 20 ARIIAQTTVDAKLHADFEESGSSFDYSSSVRVTDSVGGDQPPRSDKVTTAYLHHIQKGKL 79
Query: 77 IQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAA 136
IQPFGC++A+DE+ F V+ YSENAPE+L + HAVP++ + L +G D+RT+FT+ A+
Sbjct: 80 IQPFGCLLALDEKTFRVVAYSENAPELLTMVSHAVPSVGEHPVLGIGTDIRTIFTAPSAS 139
Query: 137 ALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGALK 196
ALQKA FG+V+LLNPIL+HCKTSGKPFYAI+HR+ L+ID EPV P +VP+TAAGAL+
Sbjct: 140 ALQKAMGFGDVSLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAGALQ 199
Query: 197 SYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRP 256
SYKLAAKAI+RLQSLPSG++ LCD +V EV +LTGYDR M YKFH+D+HGEVV+E +P
Sbjct: 200 SYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRAMAYKFHDDDHGEVVSEVTKP 259
Query: 257 DLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRA 316
+EPYLG HYPATDIPQASRFL MKNKVRMI DC A VKV+QD+KL L+LCGSTLRA
Sbjct: 260 GMEPYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRA 319
Query: 317 PHGCHARYMENMGSIASLVMSVTINEAEDELDN----DQEQGRKLWGLVVCHHTSPRFVP 372
PH CH +YMENM SIASLVM+V +N+ +++ D + ++ ++LWGLVVCH+TSPRFVP
Sbjct: 320 PHSCHLQYMENMNSIASLVMAVVVNDGDEDGDTPDSANPQKRKRLWGLVVCHNTSPRFVP 379
Query: 373 FPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRDSPVGIVTQTPNVM 432
FPLRYACEFL QVF + VNKE+EL Q+ EK+ILRTQT+LCDML+RD+P+GIVTQ+PN+M
Sbjct: 380 FPLRYACEFLAQVFAIHVNKELELENQIVEKNILRTQTLLCDMLMRDAPLGIVTQSPNIM 439
Query: 433 DLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAGYPGALA 492
DLVKCDGA L+YR K+W LG+TP++ Q++DIA WL EYH STGLSTDSL +AGYPGALA
Sbjct: 440 DLVKCDGAVLFYRNKIWRLGITPSDLQLQDIAFWLSEYHMDSTGLSTDSLYDAGYPGALA 499
Query: 493 LGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGGRKMHPRSSFKAFLEV 552
LGD VCG+AAV+ITSKD LFWFRS TA EI+WGGAKH+ G KD GR+MHPRSSFKAFLEV
Sbjct: 500 LGDVVCGMAAVRITSKDMLFWFRSQTAAEIRWGGAKHEPGEKDDGRRMHPRSSFKAFLEV 559
Query: 553 VKQRSLPWEDVEMDAIHSLQLILRGSLQD-EVAEDSKMIVNVPSVDDRIEKIDELRIITN 611
VK RSLPW+D EMDAIHSLQLILR + +D E + ++ D +IE + EL +T+
Sbjct: 560 VKTRSLPWKDYEMDAIHSLQLILRNTFKDIETMDVDTKTIHARLSDLKIEGMQELEAVTS 619
Query: 612 EMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNM 671
EMVRLIETA VPILAVD G VNGWN+K +ELTGL VD+AIG L+ LV SVD+VK M
Sbjct: 620 EMVRLIETATVPILAVDVDGLVNGWNTKISELTGLLVDKAIGKHLLTLVEDSSVDIVKRM 679
Query: 672 LSSAFLAI 679
L FLA+
Sbjct: 680 L---FLAL 684
>sp|P15001|PHYA_PEA Phytochrome A OS=Pisum sativum GN=PHYA PE=3 SV=1
Length = 1124
Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/683 (62%), Positives = 536/683 (78%), Gaps = 11/683 (1%)
Query: 5 STNKTNYSRSSSARSKQNARVAAQTSIDAKLAEDFDESDFDYSTSVNISSSTS----NVP 60
ST + + S ++S RS+ +AR+ AQT++DAKL F+ES + S ++ S S P
Sbjct: 2 STTRPSQSSNNSGRSRNSARIIAQTTVDAKLHATFEESGSSFDYSSSVRVSGSVDGDQQP 61
Query: 61 SST--VSAYLQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQD 118
S +AYL +QRG+ IQPFGC++A+DE+ V+ YSENAPEML + HAVP++
Sbjct: 62 RSNKVTTAYLNHIQRGKQIQPFGCLLALDEKTCKVVAYSENAPEMLTMVSHAVPSVGDHP 121
Query: 119 ALTLGIDVRTLFTSSGAAALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVID 178
AL +G D+RT+FT+ A+ALQKA F EV+LLNPIL+HCKTSGKPFYAI+HR+ L+ID
Sbjct: 122 ALGIGTDIRTVFTAPSASALQKALGFAEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIID 181
Query: 179 LEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMV 238
EPV P +VP+TAAGAL+SYKLAAKAI+RLQSL SG++ LCD +V EV +LTGYDRVM
Sbjct: 182 FEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLASGSMERLCDTMVQEVFELTGYDRVMA 241
Query: 239 YKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVI 298
YKFHED+HGEV+AE +P LEPYLG HYPATDIPQA+RFL MKNKVRMI DC A VKV+
Sbjct: 242 YKFHEDDHGEVIAEIAKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHVKVL 301
Query: 299 QDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQ----EQG 354
QD+KL L+LCGSTLRAPH CH +YM NM SIASLVM+V +N+++++ D+ ++
Sbjct: 302 QDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNDSDEDGDSADAVLPQKK 361
Query: 355 RKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCD 414
++LWGLVVCH+T+PRFVPFPLRYACEFL QVF + VNKE+EL Q+ EK+ILRTQT+LCD
Sbjct: 362 KRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELEYQILEKNILRTQTLLCD 421
Query: 415 MLLRDSPVGIVTQTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGS 474
ML+RD+P+GIV+Q+PN+MDLVKCDGAAL+YR KLWLLG TPTE Q+++IA W+ EYH S
Sbjct: 422 MLMRDAPLGIVSQSPNIMDLVKCDGAALFYRNKLWLLGATPTESQLREIALWMSEYHTDS 481
Query: 475 TGLSTDSLVEAGYPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGK 534
TGLSTDSL +AG+PGAL+L D VCG+AAV+ITSKD +FWFRSHTA EI+WGGAKH+ G +
Sbjct: 482 TGLSTDSLSDAGFPGALSLSDTVCGMAAVRITSKDIVFWFRSHTAAEIRWGGAKHEPGDQ 541
Query: 535 DGGRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQD-EVAEDSKMIVNV 593
D GRKMHPRSSFKAFLEVVK RS+PW+D EMDAIHSLQLILR + +D ++ + + +N
Sbjct: 542 DDGRKMHPRSSFKAFLEVVKARSVPWKDFEMDAIHSLQLILRNASKDTDIIDLNTKAINT 601
Query: 594 PSVDDRIEKIDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIG 653
D +IE + EL +T+EMVRLIETA VPILAVD G VNGWN K AELTGL V +AIG
Sbjct: 602 RLNDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGTVNGWNIKIAELTGLPVGEAIG 661
Query: 654 TALVDLVAGDSVDVVKNMLSSAF 676
L+ LV S D+VK ML+ A
Sbjct: 662 KHLLTLVEDSSTDIVKKMLNLAL 684
>sp|P30733|PHYA_SOLTU Phytochrome A OS=Solanum tuberosum GN=PHYA PE=2 SV=2
Length = 1123
Score = 895 bits (2312), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/668 (63%), Positives = 524/668 (78%), Gaps = 11/668 (1%)
Query: 20 KQNARVAAQTSIDAKLAEDFDES--DFDYSTSVNIS--SSTSNVPSS--TVSAYLQRVQR 73
K +AR+ AQTSIDAKL DF+ES FDYS+SV ++ + P S +AYL ++Q+
Sbjct: 17 KHSARIIAQTSIDAKLHADFEESGDSFDYSSSVRVTNVAEGEQRPKSDKVTTAYLHQIQK 76
Query: 74 GRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSS 133
G+ IQPFGC++A+DE+ V+ +SENAPEML + HAVP++ + L +GID+RT+FT
Sbjct: 77 GKFIQPFGCLLALDEKTLKVIAFSENAPEMLTMVSHAVPSVGEHPVLGIGIDIRTIFTGP 136
Query: 134 GAAALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAG 193
AALQKA FGEV+LLNP+L+HCK SGKPFYAI+HR+ L+ID EPV P +VP+TAAG
Sbjct: 137 SGAALQKALGFGEVSLLNPVLVHCKNSGKPFYAIVHRVTGSLIIDFEPVKPYEVPMTAAG 196
Query: 194 ALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAEC 253
AL+SYKLAAKAI+RLQSLPSG++ LCD +V EV +LTGYDRVM YKFH+D+HGEVV+E
Sbjct: 197 ALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMGYKFHDDDHGEVVSEI 256
Query: 254 RRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGST 313
+P LEPYLG HYPATDIPQA+RFL MKNKVRMICDC A VKV+QD+KL L+LCGST
Sbjct: 257 TKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKHVKVVQDEKLPFDLTLCGST 316
Query: 314 LRAPHGCHARYMENMGSIASLVMSVTINEAEDE---LDNDQEQGRK-LWGLVVCHHTSPR 369
LRAPH CH +YMENM SIASLVM+V +N+ ++E D+ Q Q RK LWGLVV H+T+PR
Sbjct: 317 LRAPHYCHLQYMENMNSIASLVMAVVVNDGDEEGESSDSSQSQKRKRLWGLVVSHNTTPR 376
Query: 370 FVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRDSPVGIVTQTP 429
F PFPLRYACEFL QVF + VNKE+EL Q EK+ILRTQT+LCDML+RD+P+GIV+Q+P
Sbjct: 377 FAPFPLRYACEFLAQVFAILVNKELELENQFLEKNILRTQTLLCDMLMRDAPLGIVSQSP 436
Query: 430 NVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAGYPG 489
N+MDL+KCDGAAL Y+ K+ LG+ P++ Q+ DI WL EYH STGLSTDSL +AG+PG
Sbjct: 437 NIMDLIKCDGAALLYKNKIHRLGMNPSDFQLHDIVSWLCEYHTDSTGLSTDSLYDAGFPG 496
Query: 490 ALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGGRKMHPRSSFKAF 549
ALALGDAVCG+AAV+I+ KD+LFW+RSHTA E++WGGAKH+ G KD GRKMHPRSSFK F
Sbjct: 497 ALALGDAVCGMAAVRISDKDWLFWYRSHTAAEVRWGGAKHEPGEKDDGRKMHPRSSFKGF 556
Query: 550 LEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVAEDSKMI-VNVPSVDDRIEKIDELRI 608
LEVVK RS+PW+D EMD IHSLQLILR + +D A +S I ++ D +I+ + EL
Sbjct: 557 LEVVKTRSIPWKDYEMDRIHSLQLILRNAFKDADAVNSNTISIHTKLNDLKIDGMQELEA 616
Query: 609 ITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVV 668
+T EMVRLIETA+VPI AVD G VNGWN+K AELTGL VD+AIG L+ LV SVD V
Sbjct: 617 VTAEMVRLIETASVPIFAVDVDGQVNGWNTKVAELTGLPVDEAIGKHLLTLVEDSSVDTV 676
Query: 669 KNMLSSAF 676
ML A
Sbjct: 677 NKMLELAL 684
>sp|P14712|PHYA_ARATH Phytochrome A OS=Arabidopsis thaliana GN=PHYA PE=1 SV=2
Length = 1122
Score = 893 bits (2308), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/684 (62%), Positives = 534/684 (78%), Gaps = 12/684 (1%)
Query: 5 STNKTNYSRSSSARSKQNARVAAQTSIDAKLAEDFDES--DFDYSTSVNISSST-SNVPS 61
S ++ S S RS+ +AR+ AQT++DAKL DF+ES FDYSTSV ++ N P
Sbjct: 2 SGSRPTQSSEGSRRSRHSARIIAQTTVDAKLHADFEESGSSFDYSTSVRVTGPVVENQPP 61
Query: 62 ST---VSAYLQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQD 118
+ + YL +Q+G+LIQPFGC++A+DE+ F V+ YSENA E+L +A HAVP++ +
Sbjct: 62 RSDKVTTTYLHHIQKGKLIQPFGCLLALDEKTFKVIAYSENASELLTMASHAVPSVGEHP 121
Query: 119 ALTLGIDVRTLFTSSGAAALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVID 178
L +G D+R+LFT+ A+ALQKA FG+V+LLNPIL+HC+TS KPFYAI+HR+ ++ID
Sbjct: 122 VLGIGTDIRSLFTAPSASALQKALGFGDVSLLNPILVHCRTSAKPFYAIIHRVTGSIIID 181
Query: 179 LEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMV 238
EPV P +VP+TAAGAL+SYKLAAKAI+RLQSLPSG++ LCD +V EV +LTGYDRVM
Sbjct: 182 FEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMA 241
Query: 239 YKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVI 298
YKFHED+HGEVV+E +P LEPYLG HYPATDIPQA+RFL MKNKVRMI DC A +V+
Sbjct: 242 YKFHEDDHGEVVSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCNAKHARVL 301
Query: 299 QDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELD----NDQEQG 354
QD+KL L+LCGSTLRAPH CH +YM NM SIASLVM+V +NE + E D Q Q
Sbjct: 302 QDEKLSFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNEEDGEGDAPDATTQPQK 361
Query: 355 RK-LWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLC 413
RK LWGLVVCH+T+PRFVPFPLRYACEFL QVF + VNKEVEL Q+ EK+ILRTQT+LC
Sbjct: 362 RKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEVELDNQMVEKNILRTQTLLC 421
Query: 414 DMLLRDSPVGIVTQTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRG 473
DML+RD+P+GIV+Q+PN+MDLVKCDGAAL Y+ K+W LG TP+E +++IA WL EYH
Sbjct: 422 DMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKDKIWKLGTTPSEFHLQEIASWLCEYHMD 481
Query: 474 STGLSTDSLVEAGYPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGG 533
STGLSTDSL +AG+P AL+LGD+VCG+AAV+I+SKD +FWFRSHTA E++WGGAKHD
Sbjct: 482 STGLSTDSLHDAGFPRALSLGDSVCGMAAVRISSKDMIFWFRSHTAGEVRWGGAKHDPDD 541
Query: 534 KDGGRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVAEDSKMIVNV 593
+D R+MHPRSSFKAFLEVVK RSLPW+D EMDAIHSLQLILR + +D D V
Sbjct: 542 RDDARRMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNAFKDSETTDVNTKVIY 601
Query: 594 PSVDD-RIEKIDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAI 652
++D +I+ I EL +T+EMVRLIETA VPILAVD+ G VNGWN+K AELTGL+VD+AI
Sbjct: 602 SKLNDLKIDGIQELEAVTSEMVRLIETATVPILAVDSDGLVNGWNTKIAELTGLSVDEAI 661
Query: 653 GTALVDLVAGDSVDVVKNMLSSAF 676
G + LV SV++VK ML +A
Sbjct: 662 GKHFLTLVEDSSVEIVKRMLENAL 685
>sp|P06592|PHYA_CUCPE Phytochrome A OS=Cucurbita pepo GN=PHYA PE=2 SV=1
Length = 1124
Score = 892 bits (2306), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/666 (63%), Positives = 527/666 (79%), Gaps = 13/666 (1%)
Query: 24 RVAAQTSIDAKLAEDFDES--DFDYSTSVNISSSTS--NVPSS--TVSAYLQRVQRGRLI 77
R+ AQTS+DA + DF+ES FDYS+SV ++S S P S +AYL +Q+G+LI
Sbjct: 21 RIIAQTSVDANVQADFEESGNSFDYSSSVRVTSDVSGDQQPRSDKVTTAYLHHIQKGKLI 80
Query: 78 QPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAA 137
QPFGC++A+D++ F V+ YSENAPEML + HAVP++ L +G DVRT+FT+ A+A
Sbjct: 81 QPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDVRTIFTAPSASA 140
Query: 138 LQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGALKS 197
L KA FGEV LLNPIL+HCKTSGKPFYAI+HR+ L+ID EPV P + PVTAAGAL+S
Sbjct: 141 LLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEGPVTAAGALQS 200
Query: 198 YKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPD 257
YKLAAKAI+RLQSLPSG+++ LCD +V EV +LTGYDRVM YKFH+D+HGEV++E +P
Sbjct: 201 YKLAAKAITRLQSLPSGSMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVAKPG 260
Query: 258 LEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAP 317
L+PYLG HYPATDIPQA+RFL MKNKVRMI DC A +KV+QD+KL L+LCGSTLRAP
Sbjct: 261 LQPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQFDLTLCGSTLRAP 320
Query: 318 HGCHARYMENMGSIASLVMSVTINEAEDELDN---DQEQGRKLWGLVVCHHTSPRFVPFP 374
H CH +YMENM SIASLVM+V +NE ++E + Q++ ++LWGLVVCH++SPRFVPFP
Sbjct: 321 HSCHLQYMENMNSIASLVMAVVVNEGDEENEGPALQQQKRKRLWGLVVCHNSSPRFVPFP 380
Query: 375 LRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRDSPVGIVTQTPNVMDL 434
LRYACEFL QVF + VNKE+EL Q+ EK+ILRTQT+LCDML+RD+P+GIV+++PN+MDL
Sbjct: 381 LRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDL 440
Query: 435 VKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAGYPGALALG 494
VK DGAAL Y+ K+W LG+TP + Q+ DIA WL EYH STGLSTDSL +AGYPGA+ALG
Sbjct: 441 VKSDGAALLYKKKIWRLGLTPNDFQLLDIASWLSEYHMDSTGLSTDSLYDAGYPGAIALG 500
Query: 495 DAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGGRKMHPRSSFKAFLEVVK 554
D VCG+AAV+IT+ D +FWFRSHTA EI+WGGAKH+ G KD RKMHPRSSFKAFLEVVK
Sbjct: 501 DEVCGMAAVRITNNDMIFWFRSHTASEIRWGGAKHEHGQKDDARKMHPRSSFKAFLEVVK 560
Query: 555 QRSLPWEDVEMDAIHSLQLILRGSLQD-EVAEDSKMIVNVPSVDDRIEKIDELRIITNEM 613
RSLPW+D EMDAIHSLQLILR + +D + E ++ + D +IE EL +T+EM
Sbjct: 561 TRSLPWKDYEMDAIHSLQLILRNTFKDTDATEINRKSIQTTLGDLKIEGRQELESVTSEM 620
Query: 614 VRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLS 673
VRLIETA VPILAVD G +NGWN+K AELTGL VD+AIG L+ LV SV+VV+ ML
Sbjct: 621 VRLIETATVPILAVDLDGLINGWNTKIAELTGLPVDKAIGKHLLTLVEDSSVEVVRKML- 679
Query: 674 SAFLAI 679
FLA+
Sbjct: 680 --FLAL 683
>sp|P42496|PHY_ADICA Phytochrome 1 OS=Adiantum capillus-veneris GN=PHY1 PE=2 SV=2
Length = 1118
Score = 890 bits (2301), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/658 (64%), Positives = 515/658 (78%), Gaps = 8/658 (1%)
Query: 24 RVAAQTSIDAKLAEDFDESD----FDYSTSVNISSSTSNVPSSTVSAYLQRVQRGRLIQP 79
R AQTS DAKL ++ES FDYS SV S+ + S V+AYLQR+QRG L+Q
Sbjct: 20 RRIAQTSADAKLYAAYEESSESGSFDYSQSV--SAGKEGISSQLVTAYLQRMQRGGLVQQ 77
Query: 80 FGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAALQ 139
FGC+IAV+E+ F VL Y NAPEMLD+A AVP + Q L +G DVRTL + + A+AL
Sbjct: 78 FGCLIAVEEETFRVLAYGANAPEMLDVATQAVPTMGQYSRLCIGADVRTLLSPASASALD 137
Query: 140 KAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGALKSYK 199
+ +V++ NPI + ++SGKPFYAILHR DVGLVIDLEP+ PDD +T GAL+S+K
Sbjct: 138 RVIGVVDVSMFNPITVQSRSSGKPFYAILHRNDVGLVIDLEPIRPDDASITG-GALQSHK 196
Query: 200 LAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLE 259
LAAKAI+RLQSLP G+I LLCD +V EV +LTG+DRVM YKFHEDEHGEVVAE RR DLE
Sbjct: 197 LAAKAIARLQSLPGGDIGLLCDSVVEEVHELTGFDRVMAYKFHEDEHGEVVAEIRRTDLE 256
Query: 260 PYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHG 319
PY+G HYPATDIPQA+RFL MKN+VRMICDC PPVK+IQDK L QP+SL GS LRAPHG
Sbjct: 257 PYIGLHYPATDIPQAARFLFMKNRVRMICDCRLPPVKLIQDKTLSQPMSLTGSKLRAPHG 316
Query: 320 CHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVPFPLRYAC 379
CH +YM NM SI+SLVM+V +N+++D+ QG KLWGLVVCHHTSPR+VPFP+R AC
Sbjct: 317 CHTQYMANMNSISSLVMAVIVNDSDDDSPGHSSQGIKLWGLVVCHHTSPRYVPFPVRSAC 376
Query: 380 EFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRDSPVGIVTQTPNVMDLVKCDG 439
EFL+QVF +Q+N EV ++AQ+REKHILRTQT+LCDMLLRD+P+GIV+Q+PN+MDLV CDG
Sbjct: 377 EFLMQVFSLQLNMEVGMAAQVREKHILRTQTLLCDMLLRDAPIGIVSQSPNIMDLVTCDG 436
Query: 440 AALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAGYPGALALGDAVCG 499
AALYY K WLLG TPTE QI DIA WLL+ H+ STGLSTDSL + GYP A LGDAVCG
Sbjct: 437 AALYYGKKCWLLGTTPTEAQIVDIAAWLLDCHKDSTGLSTDSLAKTGYPEASCLGDAVCG 496
Query: 500 IAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGGRKMHPRSSFKAFLEVVKQRSLP 559
+AA KIT+ DFLFWFRSHTAKE++WGGA+HD +D GR+MHPRSSFKAFLEVVKQ+SLP
Sbjct: 497 LAAAKITATDFLFWFRSHTAKEVRWGGARHDPEERDDGRRMHPRSSFKAFLEVVKQQSLP 556
Query: 560 WEDVEMDAIHSLQLILRGSLQDEVAEDSKMIVNVPSVDDRIEKIDELRIITNEMVRLIET 619
WEDVEMDAIHSLQLILRGS QD ++K +++ D +++ +DEL + +EMVRLIET
Sbjct: 557 WEDVEMDAIHSLQLILRGSFQDIDDSNTKTMIHARLNDLKLQGLDELSTVASEMVRLIET 616
Query: 620 AAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALV-DLVAGDSVDVVKNMLSSAF 676
A PILAVD G +NGWN K AELTGL+ + A+G +L +LV +S +V+ +L A
Sbjct: 617 ATAPILAVDGQGLINGWNGKVAELTGLSFETAMGKSLAKELVHEESKTIVERVLHLAL 674
>sp|Q41046|PHY_PINSY Phytochrome OS=Pinus sylvestris PE=2 SV=1
Length = 1131
Score = 884 bits (2284), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/663 (64%), Positives = 522/663 (78%), Gaps = 11/663 (1%)
Query: 22 NARVAAQTSIDAKLAEDFDES-----DFDYSTSVNISSSTSNVPSSTVSAYLQRVQRGRL 76
A AQ + DA+L + F++S FDY+ S+ + + VP ++AYL R+QRG
Sbjct: 30 KATAMAQYNSDARLLQVFEQSGESGKSFDYTRSIQVHNRA--VPEQQITAYLSRIQRGGR 87
Query: 77 IQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIE--QQDALTLGIDVRTLFTSSG 134
IQPFGC++AV+E F ++ YSEN EMLDL +VP++E QQD LT+G DVRTLFT++
Sbjct: 88 IQPFGCVLAVEETTFRIIAYSENE-EMLDLGAQSVPSMEKPQQDVLTIGTDVRTLFTAAS 146
Query: 135 AAALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGA 194
A +L+KAA E++L+NPI +HCK S KPFYAI+HRIDVG+VIDLEP+ D ++AAGA
Sbjct: 147 AHSLEKAAVAQEISLMNPIWVHCKNSRKPFYAIVHRIDVGMVIDLEPLRTGDAFMSAAGA 206
Query: 195 LKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECR 254
++S KLA +AISRLQSLP G++ LLCD +V V +LTGYDRVMVYKFHEDEHGEVVAE R
Sbjct: 207 VQSQKLAVRAISRLQSLPCGDVGLLCDTVVENVRELTGYDRVMVYKFHEDEHGEVVAEIR 266
Query: 255 RPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTL 314
R DLEPYLG HYPATDIPQASRFL M+N+VRMICDC+A PVKVIQ ++L QPL L GST
Sbjct: 267 RSDLEPYLGLHYPATDIPQASRFLFMQNRVRMICDCMATPVKVIQSEELMQPLCLVGSTP 326
Query: 315 RAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVPFP 374
APHGCHA+YM NMGSI SL+M+V IN +DE KLWGLVVCHHTSPR VPFP
Sbjct: 327 SAPHGCHAQYMANMGSIRSLLMAVIINGNDDEGGGSGRNSMKLWGLVVCHHTSPRAVPFP 386
Query: 375 LRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRDSPVGIVTQTPNVMDL 434
LRYACEFL+Q G+Q+N E++L+AQL EKHILRTQT+LCDMLLRD+P+GIVTQ+P++ DL
Sbjct: 387 LRYACEFLMQALGLQLNMELQLAAQLTEKHILRTQTLLCDMLLRDAPMGIVTQSPSIKDL 446
Query: 435 VKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAGYPGALALG 494
VKCDGAALYY G W+LGVTPTE QIKDIA+WLLE+H STGLSTDSL +AGYPGA +LG
Sbjct: 447 VKCDGAALYYGGMCWMLGVTPTEAQIKDIADWLLEHHGDSTGLSTDSLADAGYPGAASLG 506
Query: 495 DAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGGRKMHPRSSFKAFLEVVK 554
DAVCG+A+ +ITSKDFLFWFRSHTAKE+KWGGAKH KD R+MHPRSSFKAFLEVVK
Sbjct: 507 DAVCGMASARITSKDFLFWFRSHTAKEMKWGGAKHHPDDKDDARRMHPRSSFKAFLEVVK 566
Query: 555 QRSLPWEDVEMDAIHSLQLILRGSLQDEVAEDSKMIVNVPSVDDRIEKIDELRIITNEMV 614
+RSLPW++VE+DAIHSLQLILR S +D +K +V+ R++ IDEL + +EMV
Sbjct: 567 RRSLPWDNVEIDAIHSLQLILRCSFRDIDDSGTKTMVHSRLNYLRLQGIDELSSVASEMV 626
Query: 615 RLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALV-DLVAGDSVDVVKNMLS 673
RLIETA PILAVD +G VNGWN+K AELTGL V +A+G +LV DLV SV+ V+ ML
Sbjct: 627 RLIETATAPILAVDYNGLVNGWNAKVAELTGLPVGEAMGMSLVQDLVFEQSVERVEKMLH 686
Query: 674 SAF 676
+A
Sbjct: 687 NAL 689
>sp|P34094|PHYB_SOLTU Phytochrome B OS=Solanum tuberosum GN=PHYB PE=3 SV=2
Length = 1130
Score = 875 bits (2260), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/677 (63%), Positives = 516/677 (76%), Gaps = 15/677 (2%)
Query: 6 TNKTNYSRSSSARSKQNARVAAQTSIDAKLAEDFDESD-----FDYSTSVNISSSTSNVP 60
T+ NY S S + AQ + DA+L F++S FDYS SV ++T +VP
Sbjct: 22 TSNVNYKDSIS-------KAIAQYTADARLHAVFEQSGESGKFFDYSQSVK--TTTQSVP 72
Query: 61 SSTVSAYLQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDAL 120
++AYL ++QRG IQPFGCMIAVDE +F V+ YSENA EML L P +VP++E+ + L
Sbjct: 73 ERQITAYLTKIQRGGHIQPFGCMIAVDEASFRVIAYSENACEMLSLTPQSVPSLEKCEIL 132
Query: 121 TLGIDVRTLFTSSGAAALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLE 180
T+G DVRTLFT S + L++A E+ LLNPI IH K SGKPFYAILHR+DVG+VIDLE
Sbjct: 133 TIGTDVRTLFTPSSSVLLERAFGAREITLLNPIWIHSKNSGKPFYAILHRVDVGIVIDLE 192
Query: 181 PVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYK 240
P +D ++ AGA++S KLA +AIS LQSLP G+I LLCD +V V +LTGYDRVMVYK
Sbjct: 193 PARTEDPALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVESVRELTGYDRVMVYK 252
Query: 241 FHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQD 300
FHEDEHGEVVAE +R DLEPY+G HYPATDIPQASRFL +N+VRMI DC A PV+V QD
Sbjct: 253 FHEDEHGEVVAESKRSDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVRVTQD 312
Query: 301 KKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGL 360
+ L QPL L GSTLRAPHGCHA+YM NMGSIASL ++V IN ++E +LWGL
Sbjct: 313 ESLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLTLAVIINGNDEEAVGGGRNSMRLWGL 372
Query: 361 VVCHHTSPRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRDS 420
VV HHTS R +PFPLRYACEFL+Q FG+Q+N E++L++QL EKH+LRTQT+LCDMLLRDS
Sbjct: 373 VVGHHTSVRSIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLLRDS 432
Query: 421 PVGIVTQTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTD 480
P GIVTQ+P++MDLVKCDGAALYY+GK + LGVTPTE QIKDI EWLL YH STGLSTD
Sbjct: 433 PPGIVTQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEAQIKDIVEWLLAYHGDSTGLSTD 492
Query: 481 SLVEAGYPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGGRKM 540
SL +AGYPGA +LGDAVCG+A ITSKDFLFWFRSHTAKEIKWGGAKH KD G++M
Sbjct: 493 SLPDAGYPGAASLGDAVCGMAVAYITSKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRM 552
Query: 541 HPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVAEDSKMIVNVPSVDDRI 600
HPRSSFKAFLEVVK RS PWE+ EMDAIHSLQLILR S +D A +SK IV+ + +
Sbjct: 553 HPRSSFKAFLEVVKSRSSPWENAEMDAIHSLQLILRDSFKDAEASNSKAIVHAHLGEMEL 612
Query: 601 EKIDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALV-DL 659
+ IDEL + EMVRLIETA PI AVD G +NGWN+K AELTG++V++A+G +LV DL
Sbjct: 613 QGIDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVAELTGVSVEEAMGKSLVHDL 672
Query: 660 VAGDSVDVVKNMLSSAF 676
V +S + + +L +A
Sbjct: 673 VYKESQETAEKLLYNAL 689
>sp|P55141|PHYA_PETCR Phytochrome A OS=Petroselinum crispum GN=PHYA PE=2 SV=1
Length = 1129
Score = 867 bits (2239), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/678 (61%), Positives = 522/678 (76%), Gaps = 20/678 (2%)
Query: 17 ARSKQNARVAAQTSIDAKLAEDFDES--DFDYSTSVNISSS---TSNVPSSTVS-AYLQR 70
R+ QNARV T++DAK+ DF+ES FDYS+SV ++S+ S++ S+ ++ AYL
Sbjct: 14 GRANQNARVVL-TTLDAKIHADFEESGNSFDYSSSVRVTSAVGENSSIQSNKLTTAYLHH 72
Query: 71 VQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLF 130
+Q+G+LIQP GC++AVDE++F ++ YSENAPEML + HAVP++ + L +G DVRT+F
Sbjct: 73 IQKGKLIQPVGCLLAVDEKSFKIMAYSENAPEMLTMVSHAVPSVGEHPVLGIGTDVRTIF 132
Query: 131 TSSGAAALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVT 190
T+ AAALQKA F ++NLLNPIL+HCKTSGKPFYAI HR+ L+ID EPV P +VP+T
Sbjct: 133 TAPSAAALQKAVGFTDINLLNPILVHCKTSGKPFYAIAHRVTGSLIIDFEPVKPYEVPMT 192
Query: 191 AAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVV 250
AAGAL+SYKLA+KA++RLQ+LP G++ LCD +V EV +LTGYDRVM YKFH+D+HGEV
Sbjct: 193 AAGALQSYKLASKAVNRLQALPGGSMERLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVT 252
Query: 251 AECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLC 310
AE +P LEPY G HYPATD+PQA+RFL +KNKVRMICDC A V+QD+KL L+LC
Sbjct: 253 AEVTKPGLEPYFGLHYPATDVPQAARFLFLKNKVRMICDCRANSAPVLQDEKLPFELTLC 312
Query: 311 GSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDEL---DNDQEQGRKLWGLVVCHHTS 367
GSTLRAPH CH +YMENM SIASLVM+V IN++++ + D + + +KLWGLVVCH+TS
Sbjct: 313 GSTLRAPHSCHLQYMENMNSIASLVMAVVINDSDEVVESSDRNSVKSKKLWGLVVCHNTS 372
Query: 368 PRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRDSPVGIVTQ 427
PRFVPFPLRYACEFL QVF + V+KE+EL Q+ EK+ILRTQT+LCD+L+RD+P+GIV+Q
Sbjct: 373 PRFVPFPLRYACEFLAQVFAIHVSKELELENQIVEKNILRTQTLLCDLLMRDAPLGIVSQ 432
Query: 428 TPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAGY 487
+PN+MDLVKCDGAAL Y+ K++ LG TP++ Q++DI WL EYH STGLSTDSL +AGY
Sbjct: 433 SPNMMDLVKCDGAALLYKNKVYRLGATPSDYQLRDIVSWLTEYHTDSTGLSTDSLYDAGY 492
Query: 488 PGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGGRKMHPRSSFK 547
PGALALGD VCG+A VKITS D LFWFRSH A I+WGGAK + GRKMHPRSSFK
Sbjct: 493 PGALALGDVVCGMAVVKITSHDMLFWFRSHAAGHIRWGGAKAEPDENHDGRKMHPRSSFK 552
Query: 548 AFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQ---------DEVAEDSKMIVNVPSVDD 598
AFLEVVK RS W++ EMDAIHSLQLILR +L DE+ ++ +++ D
Sbjct: 553 AFLEVVKTRSTTWKEFEMDAIHSLQLILRKALSVEKAVAAQGDEIRSNTD-VIHTKLNDL 611
Query: 599 RIEKIDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVD 658
+IE I EL +T+EMVRLIETA VPI AVDA VNGWN+K AELTGL VDQA+G L+
Sbjct: 612 KIEGIQELEAVTSEMVRLIETATVPIFAVDADEIVNGWNTKIAELTGLPVDQAMGKHLLT 671
Query: 659 LVAGDSVDVVKNMLSSAF 676
LV SV V +L+ A
Sbjct: 672 LVEDSSVGTVVFLLALAL 689
>sp|Q9ZS62|PHYB1_SOLLC Phytochrome B1 OS=Solanum lycopersicum GN=PHYB1 PE=2 SV=1
Length = 1131
Score = 867 bits (2239), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/696 (60%), Positives = 520/696 (74%), Gaps = 20/696 (2%)
Query: 1 MSSKSTNKTNYSRSSSARSKQN-----------ARVAAQTSIDAKLAEDFDES-----DF 44
M+S S K +Y SS +++ + ++ AQ + DA+L F++S F
Sbjct: 1 MASGSRTKHSYHNSSQGQAQSSGTSNMNYKDSISKAIAQYTADARLHAVFEQSGESGKSF 60
Query: 45 DYSTSVNISSSTSNVPSSTVSAYLQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEML 104
DYS SV ++T +VP ++AYL ++QRG IQPFGCMIAVDE +F ++ YSENA EML
Sbjct: 61 DYSQSVK--TTTQSVPERQITAYLTKIQRGGHIQPFGCMIAVDEASFRIIAYSENACEML 118
Query: 105 DLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAALQKAANFGEVNLLNPILIHCKTSGKPF 164
L P +VP++++ + LT+G DVRTLFT S + L++A E+ LLNPI IH K SGKPF
Sbjct: 119 SLTPQSVPSLDKSEILTVGTDVRTLFTPSSSVLLERAFGAREITLLNPIWIHSKNSGKPF 178
Query: 165 YAILHRIDVGLVIDLEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLV 224
YAILHR+DVG+VIDLEP +D ++ AGA++S KLA +AIS LQSLP G+I LLCD +V
Sbjct: 179 YAILHRVDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVV 238
Query: 225 NEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKV 284
V +LTGYDRVMVYKFHEDEHGEVVAE +R DLEPY+G HYPATDIPQASRFL +N+V
Sbjct: 239 ESVRELTGYDRVMVYKFHEDEHGEVVAESKRSDLEPYIGLHYPATDIPQASRFLFKQNRV 298
Query: 285 RMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAE 344
RMI DC A PV+V QD+ L QPL L GSTLRAPHGCHA+YM NMGSIASL ++V IN +
Sbjct: 299 RMIVDCHATPVRVTQDESLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLTLAVIINGND 358
Query: 345 DELDNDQEQGRKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKH 404
+E +LWGLVV HHTS R +PFPLRYACEFL+Q FG+Q+N E++L++QL EKH
Sbjct: 359 EEAVGGGRNSMRLWGLVVGHHTSVRSIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKH 418
Query: 405 ILRTQTVLCDMLLRDSPVGIVTQTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIA 464
+LRTQT+LCDMLLRDSP GIVTQ+P++MDLVKCDGAALYY+ K + LGVTPTE QIKDI
Sbjct: 419 VLRTQTLLCDMLLRDSPPGIVTQSPSIMDLVKCDGAALYYQRKYYPLGVTPTEAQIKDIV 478
Query: 465 EWLLEYHRGSTGLSTDSLVEAGYPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKW 524
EWLL YH STGLSTDSL +AGYPGA +LGDAVCG+A ITSKDFLFWFRSHTAKEIKW
Sbjct: 479 EWLLAYHGDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITSKDFLFWFRSHTAKEIKW 538
Query: 525 GGAKHDSGGKDGGRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVA 584
GGAKH KD G++MHPRSSFKAFLEVVK RS PWE+ EMDAIHSLQLILR S +D A
Sbjct: 539 GGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSSPWENAEMDAIHSLQLILRDSFKDAEA 598
Query: 585 EDSKMIVNVPSVDDRIEKIDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELT 644
+SK IV+ + ++ IDEL + EMVRLIETA PI VD +G +NGWN K ELT
Sbjct: 599 SNSKAIVHALG-EMELQGIDELSSVAREMVRLIETATAPIFGVDVNGRINGWNEKVVELT 657
Query: 645 GLTVDQAIGTALV-DLVAGDSVDVVKNMLSSAFLAI 679
GL+ ++A G +LV DL+ +S + + +L +A +
Sbjct: 658 GLSAEEAKGKSLVHDLLYKESQESAEKLLYNALRGV 693
>sp|P29130|PHYB_TOBAC Phytochrome B OS=Nicotiana tabacum GN=PHYB PE=2 SV=2
Length = 1132
Score = 862 bits (2228), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/680 (62%), Positives = 515/680 (75%), Gaps = 16/680 (2%)
Query: 3 SKSTNKTNYSRSSSARSKQNARVAAQTSIDAKLAEDFDES-----DFDYSTSVNISSSTS 57
S T+ NY S S + AQ + DA+L F++S FDYS S+ +++ S
Sbjct: 22 SSGTSNVNYKDSIS-------KAIAQYTADARLHAVFEQSGESGKSFDYSQSIK-TTTQS 73
Query: 58 NVPSSTVSAYLQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQ 117
VP ++AYL ++QRG IQPFGCMIAVDE +F V+ YSENA EML L P +VP++E+
Sbjct: 74 VVPEQQITAYLTKIQRGGHIQPFGCMIAVDEASFRVIAYSENACEMLSLTPQSVPSLERP 133
Query: 118 DALTLGIDVRTLFTSSGAAALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVI 177
+ LT+G DVRTLFT S + L++A E+ LLNPI IH K SGKPFYAILHR+DVG+VI
Sbjct: 134 EILTVGTDVRTLFTPSSSVLLERAFGAREITLLNPIWIHSKNSGKPFYAILHRVDVGIVI 193
Query: 178 DLEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVM 237
DLEP +D ++ AGA++S KLA +AIS LQSLP G++ LLCD +V V +LTGYDRVM
Sbjct: 194 DLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPGGDVKLLCDTVVESVRELTGYDRVM 253
Query: 238 VYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKV 297
VYKFHEDEHGEVVAE + PDLEPY+G HYPATDIPQASRFL +N+VRMI DC A PV+V
Sbjct: 254 VYKFHEDEHGEVVAESKIPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHATPVRV 313
Query: 298 IQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKL 357
+QD+ L QPL L GSTLRAPHGCHA+YM NMGSIASL ++V IN ++E + R L
Sbjct: 314 VQDESLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLTLAVIINGNDEEAVGGRSSMR-L 372
Query: 358 WGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLL 417
WGLVV HHTS R +PFPLRYACEFL+Q FG+Q+N E++L++QL EKH+LRTQT+LCDMLL
Sbjct: 373 WGLVVGHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQLSEKHVLRTQTLLCDMLL 432
Query: 418 RDSPVGIVTQTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGL 477
RDSP GIV Q+P++MDLVKCDGAALY +GK + LGVTPTE QIKDI EWLL YH STGL
Sbjct: 433 RDSPTGIVIQSPSIMDLVKCDGAALYCQGKYYPLGVTPTEAQIKDIVEWLLTYHGDSTGL 492
Query: 478 STDSLVEAGYPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGG 537
STDSL +AGYPGA LGDAVCG+A ITSKDFLFWFRSHTAKEIKWGGAKH KD G
Sbjct: 493 STDSLADAGYPGAALLGDAVCGMAVAYITSKDFLFWFRSHTAKEIKWGGAKHHPEDKDDG 552
Query: 538 RKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVAEDSKMIVNVPSVD 597
++MHPRSSFKAFLEVVK RSLPWE+ EMDAIHSL LILR S +D A +SK +V+ +
Sbjct: 553 QRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSL-LILRDSFKDAEASNSKAVVHAQLGE 611
Query: 598 DRIEKIDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALV 657
++ IDEL + EMVRLIETA PI AVD G +NGWN+K AELT L+V++A+G +LV
Sbjct: 612 MELQGIDELSSVAREMVRLIETATAPIFAVDVEGRINGWNAKVAELTDLSVEEAMGKSLV 671
Query: 658 -DLVAGDSVDVVKNMLSSAF 676
DLV +S + + +L +A
Sbjct: 672 HDLVHKESQETAEKLLFNAL 691
>sp|P14713|PHYB_ARATH Phytochrome B OS=Arabidopsis thaliana GN=PHYB PE=1 SV=1
Length = 1172
Score = 852 bits (2200), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/689 (60%), Positives = 515/689 (74%), Gaps = 16/689 (2%)
Query: 4 KSTNKTNYSRSSSARSKQN----ARVAAQTSIDAKLAEDFDES-----DFDYSTSVNISS 54
+ + S + S R + N ++ Q ++DA+L F++S FDYS S+ ++
Sbjct: 32 RGGEQAQSSGTKSLRPRSNTESMSKAIQQYTVDARLHAVFEQSGESGKSFDYSQSLKTTT 91
Query: 55 STSNVPSSTVSAYLQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNI 114
S+VP ++AYL R+QRG IQPFGCMIAVDE +F ++GYSENA EML + P +VP +
Sbjct: 92 YGSSVPEQQITAYLSRIQRGGYIQPFGCMIAVDESSFRIIGYSENAREMLGIMPQSVPTL 151
Query: 115 EQQDALTLGIDVRTLFTSSGAAALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVG 174
E+ + L +G DVR+LFTSS + L++A E+ LLNP+ IH K +GKPFYAILHRIDVG
Sbjct: 152 EKPEILAMGTDVRSLFTSSSSILLERAFVAREITLLNPVWIHSKNTGKPFYAILHRIDVG 211
Query: 175 LVIDLEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYD 234
+VIDLEP +D ++ AGA++S KLA +AIS+LQ+LP G+I LLCD +V V DLTGYD
Sbjct: 212 VVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQALPGGDIKLLCDTVVESVRDLTGYD 271
Query: 235 RVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPP 294
RVMVYKFHEDEHGEVVAE +R DLEPY+G HYPATDIPQASRFL +N+VRMI DC A P
Sbjct: 272 RVMVYKFHEDEHGEVVAESKRDDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCNATP 331
Query: 295 VKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDN--DQE 352
V V+QD +L Q + L GSTLRAPHGCH++YM NMGSIASL M+V IN ED+ N
Sbjct: 332 VLVVQDDRLTQSMCLVGSTLRAPHGCHSQYMANMGSIASLAMAVIINGNEDDGSNVASGR 391
Query: 353 QGRKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVL 412
+LWGLVVCHHTS R +PFPLRYACEFL+Q FG+Q+N E++L+ Q+ EK +LRTQT+L
Sbjct: 392 SSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQLNMELQLALQMSEKRVLRTQTLL 451
Query: 413 CDMLLRDSPVGIVTQTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHR 472
CDMLLRDSP GIVTQ+P++MDLVKCDGAA Y GK + LGV P+E QIKD+ EWLL H
Sbjct: 452 CDMLLRDSPAGIVTQSPSIMDLVKCDGAAFLYHGKYYPLGVAPSEVQIKDVVEWLLANHA 511
Query: 473 GSTGLSTDSLVEAGYPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSG 532
STGLSTDSL +AGYPGA ALGDAVCG+A IT +DFLFWFRSHTAKEIKWGGAKH
Sbjct: 512 DSTGLSTDSLGDAGYPGAAALGDAVCGMAVAYITKRDFLFWFRSHTAKEIKWGGAKHHPE 571
Query: 533 GKDGGRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQD-EVAEDSKMIV 591
KD G++MHPRSSF+AFLEVVK RS PWE EMDAIHSLQLILR S ++ E A +SK++
Sbjct: 572 DKDDGQRMHPRSSFQAFLEVVKSRSQPWETAEMDAIHSLQLILRDSFKESEAAMNSKVVD 631
Query: 592 NV--PSVDDRIEK-IDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTV 648
V P D E+ IDEL + EMVRLIETA VPI AVDA G +NGWN+K AELTGL+V
Sbjct: 632 GVVQPCRDMAGEQGIDELGAVAREMVRLIETATVPIFAVDAGGCINGWNAKIAELTGLSV 691
Query: 649 DQAIGTALV-DLVAGDSVDVVKNMLSSAF 676
++A+G +LV DL+ ++ V +LS A
Sbjct: 692 EEAMGKSLVSDLIYKENEATVNKLLSRAL 720
>sp|P93526|PHYA_SORBI Phytochrome a OS=Sorghum bicolor GN=PHYA PE=2 SV=1
Length = 1131
Score = 850 bits (2195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/667 (62%), Positives = 503/667 (75%), Gaps = 12/667 (1%)
Query: 22 NARVAAQTSIDAKLAEDFDES--DFDYSTSVNISSSTSNVP---SSTVSAYLQRVQRGRL 76
AR+ AQT++DA+L +++ES FDYS V ST + S V AYLQ +QRG+L
Sbjct: 21 QARILAQTTLDAELNAEYEESGDSFDYSKLVEAQRSTPSEQQGRSGKVIAYLQHIQRGKL 80
Query: 77 IQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAA 136
IQPFGC++A+DE++F V+ +SENAPEML HAVPN++ L +G +VR+LFT GA
Sbjct: 81 IQPFGCLLALDEKSFRVIAFSENAPEMLTTVSHAVPNVDDPPKLGIGTNVRSLFTDPGAT 140
Query: 137 ALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGALK 196
ALQKA F +V+LLNPIL+ CKTSGKPFYAI+HR LV+D EPV P + P TAAGAL+
Sbjct: 141 ALQKALGFADVSLLNPILVQCKTSGKPFYAIVHRATGCLVVDFEPVKPTEFPATAAGALQ 200
Query: 197 SYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRP 256
SYKLAAKAIS++QSLP G++ LC+ +V EV +LTGYDRVM YKFHEDEHGEV AE +P
Sbjct: 201 SYKLAAKAISKIQSLPGGSMEALCNTVVKEVFELTGYDRVMAYKFHEDEHGEVFAEITKP 260
Query: 257 DLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRA 316
+EPYLG HYPATDIPQA+RFL MKNKVRMICDC A VK+I+D+ L +SLCGSTLRA
Sbjct: 261 GIEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKSVKIIEDEALSIDISLCGSTLRA 320
Query: 317 PHGCHARYMENMGSIASLVMSVTINEAEDE------LDNDQEQGRKLWGLVVCHHTSPRF 370
PH CH +YMENM SIASLVM+V +NE E++ Q++ ++LWGL+VCHH SPR+
Sbjct: 321 PHSCHLQYMENMNSIASLVMAVVVNENEEDDEPGPEQPPQQQKKKRLWGLIVCHHESPRY 380
Query: 371 VPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRD-SPVGIVTQTP 429
VPFPLRYACEFL QVF V VNKE EL Q+REK ILR QT+L DML ++ SP+ IV+ +P
Sbjct: 381 VPFPLRYACEFLAQVFAVHVNKEFELEKQIREKSILRMQTMLSDMLFKEASPLSIVSGSP 440
Query: 430 NVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAGYPG 489
N+MDLVKCDGAAL Y K+W L PTE QI+DIA WL E H STGLSTDSL +AGYPG
Sbjct: 441 NIMDLVKCDGAALLYGDKVWRLQTAPTESQIRDIAFWLSEVHGDSTGLSTDSLQDAGYPG 500
Query: 490 ALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGGRKMHPRSSFKAF 549
A +LGD +CG+A KITSKD LFWFRSHTA EIKWGGAKHD KD R+MHPR SFKAF
Sbjct: 501 AASLGDMICGMAVAKITSKDILFWFRSHTAAEIKWGGAKHDPSDKDDNRRMHPRLSFKAF 560
Query: 550 LEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVAEDSKMIVNVPSVDDRIEKIDELRII 609
LEVVK +SLPW D EMDAIHSLQLILRG+L D + ++ D +++ + EL+ +
Sbjct: 561 LEVVKMKSLPWSDYEMDAIHSLQLILRGTLNDALKPVQASGLDNQIGDLKLDGLAELQAV 620
Query: 610 TNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVK 669
T+EMVRL+ETA VPILAVD +G VNGWN K AEL+GL VD+AIG ++ LV SV +V+
Sbjct: 621 TSEMVRLMETATVPILAVDGNGLVNGWNQKVAELSGLRVDEAIGRHILTLVEDSSVSIVQ 680
Query: 670 NMLSSAF 676
ML A
Sbjct: 681 RMLYLAL 687
>sp|Q10DU0|PHYA_ORYSJ Phytochrome A OS=Oryza sativa subsp. japonica GN=PHYA PE=2 SV=1
Length = 1128
Score = 839 bits (2168), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/641 (63%), Positives = 489/641 (76%), Gaps = 12/641 (1%)
Query: 25 VAAQTSIDAKLAEDFDE--SDFDYSTSVNISSST---SNVPSSTVSAYLQRVQRGRLIQP 79
+ AQT++DA+L +++E FDYS V +T S V AYL +QR +LIQP
Sbjct: 24 ILAQTTLDAELNAEYEEYGDSFDYSKLVEAQRTTGPEQQARSEKVIAYLHHIQRAKLIQP 83
Query: 80 FGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAALQ 139
FGC++A+DE+ F V+ SENAPEML HAVP+++ L +G +V +LFT GA ALQ
Sbjct: 84 FGCLLALDEKTFNVIALSENAPEMLTTVSHAVPSVDDPPKLRIGTNVWSLFTDPGATALQ 143
Query: 140 KAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGALKSYK 199
KA F +V+LLNPIL+ CKTSGKPFYAI+HR LV+D EPV P + P TAAGAL+SYK
Sbjct: 144 KALGFADVSLLNPILVQCKTSGKPFYAIVHRATGCLVVDFEPVKPTEFPATAAGALQSYK 203
Query: 200 LAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLE 259
LAAKAIS++QSLP G++ +LC+ +V E+ DLTGYDRVM YKFHED+HGEV AE +P LE
Sbjct: 204 LAAKAISKIQSLPGGSMEVLCNTVVKELFDLTGYDRVMAYKFHEDDHGEVFAEITKPGLE 263
Query: 260 PYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHG 319
PYLG HYPATDIPQA+RFL MKNKVRMICDC A +K+I+D+ L +SLCGSTLRAPH
Sbjct: 264 PYLGLHYPATDIPQAARFLFMKNKVRMICDCRARSIKIIEDESLHLDISLCGSTLRAPHS 323
Query: 320 CHARYMENMGSIASLVMSVTINEAE--DELDND----QEQGRKLWGLVVCHHTSPRFVPF 373
CH +YMENM SIASLVM+V +NE E DE+ D Q++ +KLWGL+VCHH SPR+VPF
Sbjct: 324 CHLQYMENMNSIASLVMAVVVNENEDDDEVGADQPAQQQKRKKLWGLLVCHHESPRYVPF 383
Query: 374 PLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRD-SPVGIVTQTPNVM 432
PLRYACEFL QVF V VNKE EL Q+REK ILR QT+L DMLLR+ SP+ IV+ TPN+M
Sbjct: 384 PLRYACEFLAQVFAVHVNKEFELERQVREKSILRMQTMLSDMLLRESSPLSIVSGTPNIM 443
Query: 433 DLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAGYPGALA 492
DLVKCDGAAL Y GK+W L PTE QI+DIA WL + HR STGLSTDSL +AGYPGA A
Sbjct: 444 DLVKCDGAALLYGGKVWRLQNAPTESQIRDIAFWLSDVHRDSTGLSTDSLHDAGYPGAAA 503
Query: 493 LGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGGRKMHPRSSFKAFLEV 552
LGD +CG+A KI SKD LFWFRSHTA EI+WGGAKHD KD R+MHPR SFKAFLEV
Sbjct: 504 LGDMICGMAVAKINSKDILFWFRSHTAAEIRWGGAKHDPSDKDDSRRMHPRLSFKAFLEV 563
Query: 553 VKQRSLPWEDVEMDAIHSLQLILRGSLQDEVAEDSKMIVNVPSVDDRIEKIDELRIITNE 612
VK +SLPW D EMDAIHSLQLILRG+L D++ ++ D +++ + EL+ +T+E
Sbjct: 564 VKMKSLPWNDYEMDAIHSLQLILRGTLNDDIKPTRAASLDNQVGDLKLDGLAELQAVTSE 623
Query: 613 MVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIG 653
MVRL+ETA VPILAVD++G VNGWN K AELTGL VD+AIG
Sbjct: 624 MVRLMETATVPILAVDSNGLVNGWNQKVAELTGLRVDEAIG 664
>sp|A2XLG5|PHYA_ORYSI Phytochrome A OS=Oryza sativa subsp. indica GN=PHYA PE=2 SV=2
Length = 1128
Score = 839 bits (2168), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/641 (63%), Positives = 489/641 (76%), Gaps = 12/641 (1%)
Query: 25 VAAQTSIDAKLAEDFDE--SDFDYSTSVNISSST---SNVPSSTVSAYLQRVQRGRLIQP 79
+ AQT++DA+L +++E FDYS V +T S V AYL +QR +LIQP
Sbjct: 24 ILAQTTLDAELNAEYEEYGDSFDYSKLVEAQRTTGPEQQARSEKVIAYLHHIQRAKLIQP 83
Query: 80 FGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAALQ 139
FGC++A+DE+ F V+ SENAPEML HAVP+++ L +G +V +LFT GA ALQ
Sbjct: 84 FGCLLALDEKTFNVIALSENAPEMLTTVSHAVPSVDDPPKLRIGTNVWSLFTDPGATALQ 143
Query: 140 KAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGALKSYK 199
KA F +V+LLNPIL+ CKTSGKPFYAI+HR LV+D EPV P + P TAAGAL+SYK
Sbjct: 144 KALGFADVSLLNPILVQCKTSGKPFYAIVHRATGCLVVDFEPVKPTEFPATAAGALQSYK 203
Query: 200 LAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLE 259
LAAKAIS++QSLP G++ +LC+ +V E+ DLTGYDRVM YKFHED+HGEV AE +P LE
Sbjct: 204 LAAKAISKIQSLPGGSMEVLCNTVVKELFDLTGYDRVMAYKFHEDDHGEVFAEITKPGLE 263
Query: 260 PYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHG 319
PYLG HYPATDIPQA+RFL MKNKVRMICDC A +K+I+D+ L +SLCGSTLRAPH
Sbjct: 264 PYLGLHYPATDIPQAARFLFMKNKVRMICDCRARSIKIIEDESLHLDISLCGSTLRAPHS 323
Query: 320 CHARYMENMGSIASLVMSVTINEAE--DELDND----QEQGRKLWGLVVCHHTSPRFVPF 373
CH +YMENM SIASLVM+V +NE E DE+ D Q++ +KLWGL+VCHH SPR+VPF
Sbjct: 324 CHLQYMENMNSIASLVMAVVVNENEDDDEVGADQPAQQQKRKKLWGLLVCHHESPRYVPF 383
Query: 374 PLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRD-SPVGIVTQTPNVM 432
PLRYACEFL QVF V VNKE EL Q+REK ILR QT+L DMLLR+ SP+ IV+ TPN+M
Sbjct: 384 PLRYACEFLAQVFAVHVNKEFELERQVREKSILRMQTMLSDMLLRESSPLSIVSGTPNIM 443
Query: 433 DLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAGYPGALA 492
DLVKCDGAAL Y GK+W L PTE QI+DIA WL + HR STGLSTDSL +AGYPGA A
Sbjct: 444 DLVKCDGAALLYGGKVWRLQNAPTESQIRDIAFWLSDVHRDSTGLSTDSLHDAGYPGAAA 503
Query: 493 LGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGGRKMHPRSSFKAFLEV 552
LGD +CG+A KI SKD LFWFRSHTA EI+WGGAKHD KD R+MHPR SFKAFLEV
Sbjct: 504 LGDMICGMAVAKINSKDILFWFRSHTAAEIRWGGAKHDPSDKDDSRRMHPRLSFKAFLEV 563
Query: 553 VKQRSLPWEDVEMDAIHSLQLILRGSLQDEVAEDSKMIVNVPSVDDRIEKIDELRIITNE 612
VK +SLPW D EMDAIHSLQLILRG+L D++ ++ D +++ + EL+ +T+E
Sbjct: 564 VKMKSLPWNDYEMDAIHSLQLILRGTLNDDIKPTRAASLDNQVGDLKLDGLAELQAVTSE 623
Query: 613 MVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIG 653
MVRL+ETA VPILAVD++G VNGWN K AELTGL VD+AIG
Sbjct: 624 MVRLMETATVPILAVDSNGLVNGWNQKVAELTGLRVDEAIG 664
>sp|P19862|PHYA1_MAIZE Phytochrome A OS=Zea mays GN=PHYA1 PE=3 SV=1
Length = 1131
Score = 839 bits (2168), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/664 (62%), Positives = 499/664 (75%), Gaps = 12/664 (1%)
Query: 25 VAAQTSIDAKLAEDFDES--DFDYSTSVNISSST---SNVPSSTVSAYLQRVQRGRLIQP 79
+ AQT++DA+L +++ES FDYS V ST S V AYLQ +QRG+LIQP
Sbjct: 24 ILAQTTLDAELNAEYEESGDSFDYSKLVEAQRSTPPEQQGRSGKVIAYLQHIQRGKLIQP 83
Query: 80 FGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAALQ 139
FGC++A+DE++F V+ +SENAPEML HAVPN++ L +G +VR+LFT GA ALQ
Sbjct: 84 FGCLLALDEKSFRVIAFSENAPEMLTTVSHAVPNVDDPPKLGIGTNVRSLFTDPGATALQ 143
Query: 140 KAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGALKSYK 199
KA F +V+LLNPIL+ CKTSGKPFYAI+HR LV+D EPV P + P TAAGAL+SYK
Sbjct: 144 KALGFADVSLLNPILVQCKTSGKPFYAIVHRATGCLVVDFEPVKPTEFPATAAGALQSYK 203
Query: 200 LAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLE 259
LAAKAIS++QSLP G++ LC+ +V EV DLTGYDRVM YKFHEDEHGEV AE +P +E
Sbjct: 204 LAAKAISKIQSLPGGSMEALCNTVVKEVFDLTGYDRVMAYKFHEDEHGEVFAEITKPGIE 263
Query: 260 PYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHG 319
PY+G HYPATDIPQA+RFL MKNKVRMICDC A VK+I+D+ L +SLCGSTLRAPH
Sbjct: 264 PYIGLHYPATDIPQAARFLFMKNKVRMICDCRARSVKIIEDEALSIDISLCGSTLRAPHS 323
Query: 320 CHARYMENMGSIASLVMSVTI------NEAEDELDNDQEQGRKLWGLVVCHHTSPRFVPF 373
CH +YMENM SIASLVM+V + +E E E Q++ ++LWGL+VCHH SPR+VPF
Sbjct: 324 CHLKYMENMNSIASLVMAVVVNENEEDDEPEPEQPPQQQKKKRLWGLIVCHHESPRYVPF 383
Query: 374 PLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRD-SPVGIVTQTPNVM 432
PLRYACEFL QVF V VNKE EL Q+REK+ILR QT+L DML ++ SP+ IV+ +PN+M
Sbjct: 384 PLRYACEFLAQVFAVHVNKEFELEKQIREKNILRMQTMLSDMLFKESSPLSIVSGSPNIM 443
Query: 433 DLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAGYPGALA 492
DLVKCDGAAL Y K+W L PTE QI+DIA WL E H STGLSTDSL +AGYPGA +
Sbjct: 444 DLVKCDGAALLYGDKVWRLQTAPTESQIRDIAFWLSEVHGDSTGLSTDSLQDAGYPGAAS 503
Query: 493 LGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGGRKMHPRSSFKAFLEV 552
LGD +CG+A KITSKD LFWFRSHTA EIKWGGAKHD KD R+MHPR SFKAFLEV
Sbjct: 504 LGDMICGMAVAKITSKDILFWFRSHTAAEIKWGGAKHDPSDKDDNRRMHPRLSFKAFLEV 563
Query: 553 VKQRSLPWEDVEMDAIHSLQLILRGSLQDEVAEDSKMIVNVPSVDDRIEKIDELRIITNE 612
VK +SLPW D EMDAIHSLQLILRG+L D ++ D +++ + EL+ +T+E
Sbjct: 564 VKTKSLPWSDYEMDAIHSLQLILRGTLNDASKPAQASGLDNQIGDLKLDGLAELQAVTSE 623
Query: 613 MVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNML 672
MVRL+ETA VPILAVD +G VNGWN K AEL+GL VD+AIG ++ LV SV +V+ ML
Sbjct: 624 MVRLMETATVPILAVDGNGLVNGWNQKVAELSGLRVDEAIGRHILTLVEDSSVSLVQRML 683
Query: 673 SSAF 676
A
Sbjct: 684 YLAL 687
>sp|P93527|PHYB_SORBI Phytochrome B OS=Sorghum bicolor GN=PHYB PE=3 SV=2
Length = 1178
Score = 835 bits (2158), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/675 (61%), Positives = 511/675 (75%), Gaps = 27/675 (4%)
Query: 23 ARVAAQTSIDAKLAEDFDES-----DFDYSTSVNISSSTSNVPSSTVSAYLQRVQRGRLI 77
++ AQ ++DA+L F++S FDYS S+ + S+ ++AYL R+QRG I
Sbjct: 68 SKAVAQYTLDARLHAVFEQSGASGRSFDYSQSLRAPPTPSS--EQQIAAYLSRIQRGGHI 125
Query: 78 QPFGCMIAV-DEQNFTVLGYSENAPEMLDLAPH-AVPNIEQQ--DALTLGIDVRTLFTSS 133
QPFGC +AV D+ +F +L +SENA ++LDL+PH +VP+++ ++LG D R LF+ S
Sbjct: 126 QPFGCTLAVADDSSFRLLAFSENAADLLDLSPHHSVPSLDSAAPPPVSLGADARLLFSPS 185
Query: 134 GAAALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAG 193
A L++A E++LLNP+ IH + S KPFYAILHRIDVG+VIDLEP +D ++ AG
Sbjct: 186 SAVLLERAFAAREISLLNPLWIHSRVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAG 245
Query: 194 ALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAEC 253
A++S KLA +AISRLQ+LP G+I LLCD +V V +LTGYDRVMVY+FHEDEHGEVVAE
Sbjct: 246 AVQSQKLAVRAISRLQALPGGDIKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAES 305
Query: 254 RRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGST 313
RR +LEPYLG HYPATDIPQASRFL +N+VRMI DC A PV+VIQD + QPL L GST
Sbjct: 306 RRDNLEPYLGLHYPATDIPQASRFLFRQNRVRMIADCHATPVRVIQDPGMSQPLCLVGST 365
Query: 314 LRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGR-------KLWGLVVCHHT 366
LRAPHGCHA+YM NMGSIASLVM+V I+ D D++ GR KLWGLVVCHHT
Sbjct: 366 LRAPHGCHAQYMANMGSIASLVMAVIISSGGD----DEQTGRGGISSAMKLWGLVVCHHT 421
Query: 367 SPRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRDSPVGIVT 426
SPR +PFPLRYACEFL+Q FG+Q+N E++L+ QL EKHILRTQT+LCDMLLRDSP GIVT
Sbjct: 422 SPRCIPFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVT 481
Query: 427 QTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAG 486
Q+P++MDLVKCDGAALYY GK + LGVTPTE QIKDI EWL H STGLSTDSL +AG
Sbjct: 482 QSPSIMDLVKCDGAALYYHGKYYPLGVTPTESQIKDIIEWLTVCHGDSTGLSTDSLADAG 541
Query: 487 YPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGGRKMHPRSSF 546
Y GA ALGDAVCG+A IT D+LFWFRSHTAKEIKWGGAKH KD G++MHPRSSF
Sbjct: 542 YLGAAALGDAVCGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSF 601
Query: 547 KAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQD--EVAEDSKMIVN--VPSVDDRIEK 602
KAFLEVVK RSLPWE+ EMDAIHSLQLILR S +D E +SK IVN V + +
Sbjct: 602 KAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDAAEGTSNSKAIVNGQVQLGELELRG 661
Query: 603 IDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALV-DLVA 661
I+EL + EMVRLIETA VPI AVD G +NGWN+K AELTGL+V++A+G +LV DL+
Sbjct: 662 INELSSVAREMVRLIETATVPIFAVDTDGCINGWNAKIAELTGLSVEEAMGKSLVNDLIF 721
Query: 662 GDSVDVVKNMLSSAF 676
+S ++V+ +LS A
Sbjct: 722 KESEEIVEKLLSRAL 736
>sp|A2XFW2|PHYB_ORYSI Phytochrome B OS=Oryza sativa subsp. indica GN=PHYB PE=3 SV=2
Length = 1171
Score = 831 bits (2146), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/674 (61%), Positives = 509/674 (75%), Gaps = 23/674 (3%)
Query: 23 ARVAAQTSIDAKLAEDFDES-----DFDYSTSVNISSSTSNVPSSTVSAYLQRVQRGRLI 77
++ AQ ++DA+L F++S FDY+ S+ S + S+ ++AYL R+QRG I
Sbjct: 59 SKAVAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSS--EQQIAAYLSRIQRGGHI 116
Query: 78 QPFGCMIAV-DEQNFTVLGYSENAPEMLDLAPH-AVPNIEQQDA---LTLGIDVRTLFTS 132
QPFGC +AV D+ +F +L YSEN ++LDL+PH +VP+++ ++LG D R LF
Sbjct: 117 QPFGCTLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAP 176
Query: 133 SGAAALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAA 192
S A L++A E++LLNP+ IH + S KPFYAILHRIDVG+VIDLEP +D ++ A
Sbjct: 177 SSAVLLERAFAAREISLLNPLWIHSRVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIA 236
Query: 193 GALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAE 252
GA++S KLA +AISRLQ+LP G++ LLCD +V V +LTGYDRVMVY+FHEDEHGEVVAE
Sbjct: 237 GAVQSQKLAVRAISRLQALPGGDVKLLCDTVVEHVRELTGYDRVMVYRFHEDEHGEVVAE 296
Query: 253 CRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGS 312
RR +LEPY+G HYPATDIPQASRFL +N+VRMI DC A PV+VIQD L QPL L GS
Sbjct: 297 SRRNNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGS 356
Query: 313 TLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGR-----KLWGLVVCHHTS 367
TLR+PHGCHA+YM NMGSIASLVM+V I+ D+ D++ +G KLWGLVVCHHTS
Sbjct: 357 TLRSPHGCHAQYMANMGSIASLVMAVIISSGGDD-DHNISRGSIPSAMKLWGLVVCHHTS 415
Query: 368 PRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRDSPVGIVTQ 427
PR +PFPLRYACEFL+Q FG+Q+N E++L+ QL EKHILRTQT+LCDMLLRDSP GIVTQ
Sbjct: 416 PRCIPFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQ 475
Query: 428 TPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAGY 487
+P++MDLVKCDGAALYY GK + LGVTPTE QIKDI EWL H STGLSTDSL +AGY
Sbjct: 476 SPSIMDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGY 535
Query: 488 PGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGGRKMHPRSSFK 547
PGA ALGDAV G+A IT D+LFWFRSHTAKEIKWGGAKH KD G++MHPRSSFK
Sbjct: 536 PGAAALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFK 595
Query: 548 AFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQD--EVAEDSKMIVN--VPSVDDRIEKI 603
AFLEVVK RSLPWE+ EMDAIHSLQLILR S +D E +SK IVN V + + I
Sbjct: 596 AFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGI 655
Query: 604 DELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALV-DLVAG 662
DEL + EMVRLIETA VPI AVD G +NGWN+K AELTGL+V++A+G +LV DL+
Sbjct: 656 DELSSVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFK 715
Query: 663 DSVDVVKNMLSSAF 676
+S + V +LS A
Sbjct: 716 ESEETVNKLLSRAL 729
>sp|Q10MG9|PHYB_ORYSJ Phytochrome B OS=Oryza sativa subsp. japonica GN=PHYB PE=2 SV=1
Length = 1171
Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/674 (61%), Positives = 509/674 (75%), Gaps = 23/674 (3%)
Query: 23 ARVAAQTSIDAKLAEDFDES-----DFDYSTSVNISSSTSNVPSSTVSAYLQRVQRGRLI 77
++ AQ ++DA+L F++S FDY+ S+ S + S+ ++AYL R+QRG I
Sbjct: 59 SKAVAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSS--EQQIAAYLSRIQRGGHI 116
Query: 78 QPFGCMIAV-DEQNFTVLGYSENAPEMLDLAPH-AVPNIEQQDA---LTLGIDVRTLFTS 132
QPFGC +AV D+ +F +L YSEN ++LDL+PH +VP+++ ++LG D R LF
Sbjct: 117 QPFGCTLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAP 176
Query: 133 SGAAALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAA 192
S A L++A E++LLNP+ IH + S KPFYAILHRIDVG+VIDLEP +D ++ A
Sbjct: 177 SSAVLLERAFAAREISLLNPLWIHSRVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIA 236
Query: 193 GALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAE 252
GA++S KLA +AISRLQ+LP G++ LLCD +V V +LTGYDRVMVY+FHEDEHGEVVAE
Sbjct: 237 GAVQSQKLAVRAISRLQALPGGDVKLLCDTVVEYVRELTGYDRVMVYRFHEDEHGEVVAE 296
Query: 253 CRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGS 312
RR +LEPY+G HYPATDIPQASRFL +N+VRMI DC A PV+VIQD L QPL L GS
Sbjct: 297 SRRNNLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGS 356
Query: 313 TLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGR-----KLWGLVVCHHTS 367
TLR+PHGCHA+YM NMGSIASLVM+V I+ D+ D++ +G KLWGLVVCHHTS
Sbjct: 357 TLRSPHGCHAQYMANMGSIASLVMAVIISSGGDD-DHNISRGSIPSAMKLWGLVVCHHTS 415
Query: 368 PRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRDSPVGIVTQ 427
PR +PFPLRYACEFL+Q FG+Q+N E++L+ QL EKHILRTQT+LCDMLLRDSP GIVTQ
Sbjct: 416 PRCIPFPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQ 475
Query: 428 TPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAGY 487
+P++MDLVKCDGAALYY GK + LGVTPTE QIKDI EWL H STGLSTDSL +AGY
Sbjct: 476 SPSIMDLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGY 535
Query: 488 PGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGGRKMHPRSSFK 547
PGA ALGDAV G+A IT D+LFWFRSHTAKEIKWGGAKH KD G++MHPRSSFK
Sbjct: 536 PGAAALGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFK 595
Query: 548 AFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQD--EVAEDSKMIVN--VPSVDDRIEKI 603
AFLEVVK RSLPWE+ EMDAIHSLQLILR S +D E +SK IVN V + + I
Sbjct: 596 AFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGI 655
Query: 604 DELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALV-DLVAG 662
DEL + EMVRLIETA VPI AVD G +NGWN+K AELTGL+V++A+G +LV DL+
Sbjct: 656 DELSSVAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFK 715
Query: 663 DSVDVVKNMLSSAF 676
+S + V +LS A
Sbjct: 716 ESEETVNKLLSRAL 729
>sp|P06594|PHYA4_AVESA Phytochrome A type 4 OS=Avena sativa GN=PHYA4 PE=1 SV=3
Length = 1129
Score = 823 bits (2125), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/664 (61%), Positives = 496/664 (74%), Gaps = 12/664 (1%)
Query: 25 VAAQTSIDAKLAEDFDES--DFDYSTSVNISSSTSNVP---SSTVSAYLQRVQRGRLIQP 79
V AQT++DA+L +++ES FDYS V V S V AYLQ +Q+G+LIQ
Sbjct: 22 VLAQTTLDAELNAEYEESGDSFDYSKLVEAQRDGPPVQQGRSEKVIAYLQHIQKGKLIQT 81
Query: 80 FGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAALQ 139
FGCM+A+DE++F V+ +SENAPEML HAVP+++ L +G +VR+LF+ GA AL
Sbjct: 82 FGCMLALDEKSFNVIAFSENAPEMLTTVSHAVPSVDDPPRLGIGTNVRSLFSDQGATALH 141
Query: 140 KAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGALKSYK 199
KA F +V+LLNPIL+ CKTSGKPFYAI+HR LV+D EPV P + P TAAGAL+SYK
Sbjct: 142 KALGFADVSLLNPILVQCKTSGKPFYAIVHRATGCLVVDFEPVKPTEFPATAAGALQSYK 201
Query: 200 LAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLE 259
LAAKAIS++QSLP G++ +LC+ +V EV DLTGYDRVM YKFHED+HGEV AE +P LE
Sbjct: 202 LAAKAISKIQSLPGGSMEVLCNTVVKEVFDLTGYDRVMAYKFHEDDHGEVFAEITKPGLE 261
Query: 260 PYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHG 319
PYLG HYPATDIPQA+RFL MKNKVRMICDC A +KVI+ + L +SLCGS LRAPH
Sbjct: 262 PYLGLHYPATDIPQAARFLFMKNKVRMICDCRARSIKVIEAEALPFDISLCGSALRAPHS 321
Query: 320 CHARYMENMGSIASLVMSVTINEAEDELDNDQEQ------GRKLWGLVVCHHTSPRFVPF 373
CH +YMENM SIASLVM+V +NE E++ + + EQ +KLWGL+VCHH SPR+VPF
Sbjct: 322 CHLQYMENMNSIASLVMAVVVNENEEDDEAESEQPAQQQQKKKLWGLLVCHHESPRYVPF 381
Query: 374 PLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRD-SPVGIVTQTPNVM 432
PLRYACEFL QVF V VN+E EL QLREK IL+ QT+L DML R+ SP+ IV+ PN+M
Sbjct: 382 PLRYACEFLAQVFAVHVNREFELEKQLREKSILKMQTMLSDMLFREASPLTIVSGAPNIM 441
Query: 433 DLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAGYPGALA 492
DLVKCDGAAL Y GK+W L PTE QI DIA WL + HR STGLSTDSL +AGYPGA A
Sbjct: 442 DLVKCDGAALLYGGKVWRLRNAPTESQIHDIAFWLSDVHRDSTGLSTDSLHDAGYPGASA 501
Query: 493 LGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGGRKMHPRSSFKAFLEV 552
LGD +CG+A KI SKD +FWFRSHTA EI+WGGAKHDS D R+MHPR SFKAFLEV
Sbjct: 502 LGDMICGMAVAKINSKDIIFWFRSHTAAEIRWGGAKHDSSDMDDSRRMHPRLSFKAFLEV 561
Query: 553 VKQRSLPWEDVEMDAIHSLQLILRGSLQDEVAEDSKMIVNVPSVDDRIEKIDELRIITNE 612
VK +SLPW D EMDAIHSLQLILRG+L D + ++ D +++ + EL+ +T+E
Sbjct: 562 VKMKSLPWTDYEMDAIHSLQLILRGTLNDASKPKREASLDNQIGDLKLDGLAELQAVTSE 621
Query: 613 MVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNML 672
MVRL+ETA VPILAVD +G VNGWN KAAELTGL VD AIG ++ LV SV VV+ ML
Sbjct: 622 MVRLMETATVPILAVDGNGLVNGWNQKAAELTGLRVDDAIGRHILTLVEESSVPVVQRML 681
Query: 673 SSAF 676
A
Sbjct: 682 YLAL 685
>sp|P06593|PHYA3_AVESA Phytochrome A type 3 OS=Avena sativa GN=PHYA3 PE=1 SV=3
Length = 1129
Score = 820 bits (2119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/667 (61%), Positives = 498/667 (74%), Gaps = 12/667 (1%)
Query: 22 NARVAAQTSIDAKLAEDFDES--DFDYSTSVNISSSTSNVP---SSTVSAYLQRVQRGRL 76
ARV AQT++DA+L +++ES FDYS V V S V AYLQ +Q+G+L
Sbjct: 19 QARVLAQTTLDAELNAEYEESGDSFDYSKLVEAQRDGPPVQQGRSEKVIAYLQHIQKGKL 78
Query: 77 IQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAA 136
IQ FGC++A+DE++F V+ +SENAPEML HAVP+++ L +G +VR+LF+ GA
Sbjct: 79 IQTFGCLLALDEKSFNVIAFSENAPEMLTTVSHAVPSVDDPPRLGIGTNVRSLFSDQGAT 138
Query: 137 ALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGALK 196
AL KA F +V+LLNPIL+ CKTSGKPFYAI+HR LV+D EPV P + P TAAGAL+
Sbjct: 139 ALHKALGFADVSLLNPILVQCKTSGKPFYAIVHRATGCLVVDFEPVKPTEFPATAAGALQ 198
Query: 197 SYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRP 256
SYKLAAKAIS++QSLP G++ +LC+ +V EV DLTGYDRVM YKFHED+HGEV +E +P
Sbjct: 199 SYKLAAKAISKIQSLPGGSMEVLCNTVVKEVFDLTGYDRVMAYKFHEDDHGEVFSEITKP 258
Query: 257 DLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRA 316
LEPYLG HYPATDIPQA+R L MKNKVRMICDC A +KVI+ + L +SLCGS LRA
Sbjct: 259 GLEPYLGLHYPATDIPQAARLLFMKNKVRMICDCRARSIKVIEAEALPFDISLCGSALRA 318
Query: 317 PHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQ------GRKLWGLVVCHHTSPRF 370
PH CH +YMENM SIASLVM+V +NE E++ + + EQ +KLWGL+VCHH SPR+
Sbjct: 319 PHSCHLQYMENMNSIASLVMAVVVNENEEDDEAESEQPAQQQKKKKLWGLLVCHHESPRY 378
Query: 371 VPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRD-SPVGIVTQTP 429
VPFPLRYACEFL QVF V VN+E EL QLREK+IL+ QT+L DML R+ SP+ IV+ TP
Sbjct: 379 VPFPLRYACEFLAQVFAVHVNREFELEKQLREKNILKMQTMLSDMLFREASPLTIVSGTP 438
Query: 430 NVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAGYPG 489
N+MDLVKCDGAAL Y GK+W L PTE QI DIA WL + HR STGLSTDSL +AGYPG
Sbjct: 439 NIMDLVKCDGAALLYGGKVWRLRNAPTESQIHDIAFWLSDVHRDSTGLSTDSLHDAGYPG 498
Query: 490 ALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGGRKMHPRSSFKAF 549
A ALGD +CG+A KI SKD LFWFRSHTA EI+WGGAK+D D R+MHPR SFKAF
Sbjct: 499 AAALGDMICGMAVAKINSKDILFWFRSHTAAEIRWGGAKNDPSDMDDSRRMHPRLSFKAF 558
Query: 550 LEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVAEDSKMIVNVPSVDDRIEKIDELRII 609
LEVVK +SLPW D EMDAIHSLQLILRG+L D + ++ D +++ + EL+ +
Sbjct: 559 LEVVKMKSLPWSDYEMDAIHSLQLILRGTLNDASKPKREASLDNQIGDLKLDGLAELQAV 618
Query: 610 TNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVK 669
T+EMVRL+ETA VPILAVD +G VNGWN KAAELTGL VD AIG ++ LV SV VV+
Sbjct: 619 TSEMVRLMETATVPILAVDGNGLVNGWNQKAAELTGLRVDDAIGRHILTLVEDSSVPVVQ 678
Query: 670 NMLSSAF 676
ML A
Sbjct: 679 RMLYLAL 685
>sp|P42497|PHYD_ARATH Phytochrome D OS=Arabidopsis thaliana GN=PHYD PE=1 SV=2
Length = 1164
Score = 819 bits (2116), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/687 (58%), Positives = 501/687 (72%), Gaps = 16/687 (2%)
Query: 4 KSTNKTNYSRSSSARSKQNARVAAQTSIDAKLAEDFDES-----DFDYSTSVNISSSTSN 58
+S N+ + S A Q ++DA+L F++S FDYS S+ + S+
Sbjct: 40 RSQNQQPQNHGGGTESTNKA--IQQYTVDARLHAVFEQSGESGKSFDYSQSLKTAPYDSS 97
Query: 59 VPSSTVSAYLQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIE-QQ 117
VP ++AYL R+QRG QPFGC+IAV+E FT++GYSENA EML L +VP+IE +
Sbjct: 98 VPEQQITAYLSRIQRGGYTQPFGCLIAVEESTFTIIGYSENAREMLGLMSQSVPSIEDKS 157
Query: 118 DALTLGIDVRTLFTSSGAAALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVI 177
+ LT+G D+R+LF SS L++A E+ LLNPI IH +GKPFYAILHR+DVG++I
Sbjct: 158 EVLTIGTDLRSLFKSSSYLLLERAFVAREITLLNPIWIHSNNTGKPFYAILHRVDVGILI 217
Query: 178 DLEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVM 237
DLEP +D ++ AGA++S KLA +AIS LQSLPSG+I LLCD +V V DLTGYDRVM
Sbjct: 218 DLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPSGDIKLLCDTVVESVRDLTGYDRVM 277
Query: 238 VYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKV 297
VYKFHEDEHGEVVAE +R DLEPY+G HYPATDIPQASRFL +N+VRMI DC A PV+V
Sbjct: 278 VYKFHEDEHGEVVAESKRNDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCYASPVRV 337
Query: 298 IQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGR-- 355
+QD +L Q + L GSTLRAPHGCHA+YM NMGSIASL M+V IN E++ + GR
Sbjct: 338 VQDDRLTQFICLVGSTLRAPHGCHAQYMTNMGSIASLAMAVIINGNEEDGNGVNTGGRNS 397
Query: 356 -KLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCD 414
+LWGLVVCHHTS R +PFPLRYACEFL+Q FG+Q+N E++L+ Q+ EK +LR QT+LCD
Sbjct: 398 MRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLALQVSEKRVLRMQTLLCD 457
Query: 415 MLLRDSPVGIVTQTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGS 474
MLLRDSP GIVTQ P++MDLVKC+GAA Y+GK + LGVTPT+ QI DI EWL+ H S
Sbjct: 458 MLLRDSPAGIVTQRPSIMDLVKCNGAAFLYQGKYYPLGVTPTDSQINDIVEWLVANHSDS 517
Query: 475 TGLSTDSLVEAGYPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGK 534
TGLSTDSL +AGYP A ALGDAVCG+A IT +DFLFWFRSHT KEIKWGGAKH K
Sbjct: 518 TGLSTDSLGDAGYPRAAALGDAVCGMAVACITKRDFLFWFRSHTEKEIKWGGAKHHPEDK 577
Query: 535 DGGRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVAEDSKMIVN-- 592
D G++M+PRSSF+ FLEVVK R PWE EMDAIHSLQLILR S ++ A DSK
Sbjct: 578 DDGQRMNPRSSFQTFLEVVKSRCQPWETAEMDAIHSLQLILRDSFKESEAMDSKAAAAGA 637
Query: 593 -VPSVDDRIEK-IDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQ 650
P DD +++ + E+ + EMVRLIETA VPI AVD G +NGWN+K AELTGL+V+
Sbjct: 638 VQPHGDDMVQQGMQEIGAVAREMVRLIETATVPIFAVDIDGCINGWNAKIAELTGLSVED 697
Query: 651 AIGTALV-DLVAGDSVDVVKNMLSSAF 676
A+G +LV +L+ + + V +LS A
Sbjct: 698 AMGKSLVRELIYKEYKETVDRLLSCAL 724
>sp|P55004|PHYE_IPONI Phytochrome E OS=Ipomoea nil GN=PHYE PE=2 SV=1
Length = 1115
Score = 811 bits (2096), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/680 (60%), Positives = 500/680 (73%), Gaps = 29/680 (4%)
Query: 10 NYSR----SSSARSKQN-ARVAAQTSIDAKLAEDFDES-----DFDYSTSVNISSSTSNV 59
NY + SSSA S N + AQ + DAKL +F++S FDYS SV + NV
Sbjct: 3 NYGKAVTFSSSATSNLNTGKAIAQYNADAKLMAEFEQSRESGKSFDYSRSV--IHAPQNV 60
Query: 60 PSSTVSAYLQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDA 119
++AYL R+QRG LIQPFGCM+A++E +F ++G+SEN ++L L +E +
Sbjct: 61 TEEEMTAYLSRIQRGGLIQPFGCMLAIEEPSFKIVGFSENCFDLLGLKS----GVEPPER 116
Query: 120 LTL-GIDVRTLFTSSGAAALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVID 178
++L GID RTLFT S A+L KA E++LLNPI +H K + KPFYA+LHRIDVG+VID
Sbjct: 117 MSLIGIDARTLFTLSSRASLAKAVASREISLLNPIWVHSKINQKPFYAVLHRIDVGIVID 176
Query: 179 LEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMV 238
LEP N D + AGA++S KLA +AISRLQSLP G+I LCD +V +V LTGYDRVMV
Sbjct: 177 LEPANSADPALLLAGAVQSQKLAVRAISRLQSLPGGDIGTLCDTVVEDVQKLTGYDRVMV 236
Query: 239 YKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVI 298
YKFH+D HGEVV+E RR DLEPYLG HYPATDIPQA+RFL +N+VRMICDC A PVKV+
Sbjct: 237 YKFHDDSHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCNAQPVKVL 296
Query: 299 QDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLW 358
Q ++L QPL L STLR+PHGCH +YM NMGSIASLVM+V IN +E KLW
Sbjct: 297 QCEELKQPLCLVNSTLRSPHGCHTKYMANMGSIASLVMAVVINSSE---------SMKLW 347
Query: 359 GLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLR 418
GLVVCHHTSPR+VPFPLRYACEFL+Q F +Q+ E++L++QL EK IL+TQT+LCDMLLR
Sbjct: 348 GLVVCHHTSPRYVPFPLRYACEFLMQAFSLQLYMELQLASQLAEKKILQTQTLLCDMLLR 407
Query: 419 DSPVGIVTQTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLS 478
D+P GIVTQTP++MDLV+CDGAALYY GK WLLGVTPTE Q+KDIAEWLL H STGLS
Sbjct: 408 DAPFGIVTQTPSIMDLVRCDGAALYYNGKCWLLGVTPTETQVKDIAEWLLHNHGDSTGLS 467
Query: 479 TDSLVEAGYPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGGR 538
TD L +AGYPGA LGDAV G+A +ITSKDFLFWFRSHTAKE+KWGGAKH KD G
Sbjct: 468 TDCLSDAGYPGAPLLGDAVSGMATARITSKDFLFWFRSHTAKEVKWGGAKHHPEDKDDGG 527
Query: 539 KMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVAEDSKMIVNVPSVDD 598
+MHPRSSF AFLEVVK RSLPWED E++AIHSLQLI+R SLQ + E+ V+ P +D
Sbjct: 528 RMHPRSSFIAFLEVVKSRSLPWEDSEINAIHSLQLIMRDSLQG-IGENYMKSVSSPQQND 586
Query: 599 RIE-KIDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALV 657
+ EL + E+VRL+ETA VPI VD+SG +NGWN+K AELTGL + AIG L+
Sbjct: 587 SDGVRFYELSSMALELVRLVETATVPIFGVDSSGLINGWNAKIAELTGLQANVAIGKYLI 646
Query: 658 DLVAG-DSVDVVKNMLSSAF 676
D V DS + K ++ A
Sbjct: 647 DDVTHEDSHETFKALMCRAL 666
>sp|P33529|PHY_MOUSC Phytochrome OS=Mougeotia scalaris GN=PHY PE=2 SV=2
Length = 1124
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/658 (59%), Positives = 500/658 (75%), Gaps = 10/658 (1%)
Query: 28 QTSIDAKLAEDFD------ESDFDYSTSVNIS-SSTSNVPSSTVSAYLQRVQRGRLIQPF 80
Q S DAKL+ F+ FDY+ SV S + T + + +V+AYLQR+QRG +IQ F
Sbjct: 25 QASADAKLSTAFEVSSSSGGDSFDYTKSVTASLNPTEPLAAKSVTAYLQRMQRGSIIQSF 84
Query: 81 GCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAALQK 140
GCM+AV+ F ++ YSEN EML + P +VP + Q+A+ +G DVR+L + S + ++K
Sbjct: 85 GCMMAVEPGTFRIIAYSENVSEMLGVTPQSVPTGDHQNAIGIGTDVRSLLSPSSVSVVEK 144
Query: 141 AANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDV-PVTAAGALKSYK 199
A +V+++NPI ++ + K F+AILH DVGLVIDLEP++ + +AGA++S+K
Sbjct: 145 AVAANDVSMMNPIAVYSLATQKLFFAILHMNDVGLVIDLEPISSSSDSAMFSAGAVQSHK 204
Query: 200 LAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLE 259
LAAKAISRLQSLP G+I LCDV+V EV +LTGYDRVM YKFH+DEHGEVVAE RR DLE
Sbjct: 205 LAAKAISRLQSLPGGDICGLCDVVVEEVRELTGYDRVMAYKFHDDEHGEVVAEIRRSDLE 264
Query: 260 PYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHG 319
PYLG HYPATDIPQASRFL +KN++RMICDC +P VKV+QD ++ Q +SL GST+R HG
Sbjct: 265 PYLGLHYPATDIPQASRFLFIKNRIRMICDCTSPQVKVVQDSRIPQEMSLAGSTMRGVHG 324
Query: 320 CHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVPFPLRYAC 379
CH +YM NMGS ASLVMSVTIN+ + +GRKLWGL+VCHH++PR +PFP+R AC
Sbjct: 325 CHTQYMMNMGSTASLVMSVTINDTNEIAGGPGMKGRKLWGLIVCHHSTPRHIPFPIRSAC 384
Query: 380 EFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRDSPVGIVTQTPNVMDLVKCDG 439
EFL+QVFG+Q+N EVEL+AQ REKHILRTQT+LCDMLLRD+P+GIV+Q+PNVMDLVKCDG
Sbjct: 385 EFLMQVFGLQLNMEVELAAQHREKHILRTQTLLCDMLLRDAPMGIVSQSPNVMDLVKCDG 444
Query: 440 AALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAGYPGALALGDAVCG 499
AAL + G+ WLLG++PT+EQ+KDIA WL+ H +TGLSTDSLV+AGYP A LG VCG
Sbjct: 445 AALLFGGRCWLLGISPTQEQVKDIATWLISSHTDTTGLSTDSLVDAGYPKARELGVDVCG 504
Query: 500 IAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGGRKMHPRSSFKAFLEVVKQRSLP 559
+AA +IT DFLFWFR H KE+KW GAK D G ++ G +MHPRSSFKAFLEVVKQRSLP
Sbjct: 505 MAAARITENDFLFWFRGHAQKEVKWAGAK-DGGSEEDGSRMHPRSSFKAFLEVVKQRSLP 563
Query: 560 WEDVEMDAIHSLQLILRGSLQDEVAEDSKMIVNVPSVDDRIEKIDELRIITNEMVRLIET 619
WEDVEMDAIHSLQLILRGS QD ++ + IV+ + ++ ++EL + +EMVRLIET
Sbjct: 564 WEDVEMDAIHSLQLILRGSFQDIEDKEDRKIVHARLKEMHLQGMEELSSVASEMVRLIET 623
Query: 620 AAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALV-DLVAGDSVDVVKNMLSSAF 676
A PILAVD +G VNGWN K +ELTGL++ + +G +LV DL S D V+ +L A
Sbjct: 624 ATAPILAVDTAGCVNGWNFKISELTGLSIPEVMGKSLVKDLTHPSSKDTVEKLLYMAL 681
>sp|P42500|PHYA_SOYBN Phytochrome A OS=Glycine max GN=PHYA PE=2 SV=1
Length = 1131
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/675 (58%), Positives = 502/675 (74%), Gaps = 27/675 (4%)
Query: 27 AQTSIDAKLAEDFDESDFDYSTSVNISSSTS----NVPSS--TVSAYLQRVQRGRLIQPF 80
AQ ++DAK+ F+ES + S ++ S + N P S +AYL RG++IQPF
Sbjct: 23 AQATVDAKIHATFEESGSSFDYSSSVRVSGTADGVNQPRSDKVTTAYL----RGKMIQPF 78
Query: 81 GCMIAVDEQNFT----VLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAA 136
GC++A+DE+N V+ YSEN PEML + HAVP++ AL +G D++TLFT+ +
Sbjct: 79 GCLLAIDEKNHMQTCKVIAYSENEPEMLTMVSHAVPSVGDHPALGIGTDIKTLFTAPSVS 138
Query: 137 ALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGALK 196
LQKA +V+LLNPIL+HCKTSGKPFYAI+HR+ L++D EPV P +VP+TAAGAL+
Sbjct: 139 GLQKALGCADVSLLNPILVHCKTSGKPFYAIVHRVTGSLIVDFEPVKPYEVPMTAAGALQ 198
Query: 197 SYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRP 256
SYKLAAKAI+RLQSLPSGN+ LCD +V EV +LTGYDRVM YKFHED+HGEV+ E +P
Sbjct: 199 SYKLAAKAITRLQSLPSGNMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIREITKP 258
Query: 257 DLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRA 316
LEPYLG HYPATDIPQASRFL KNKVRMI DC A V+V+QD+KL L LCGSTLRA
Sbjct: 259 CLEPYLGLHYPATDIPQASRFLFRKNKVRMIVDCHAKHVRVLQDEKLQFDLILCGSTLRA 318
Query: 317 PHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRK---LWGLVVCHHTSPRFVPF 373
PH CHA+YM NM SIASLV++V +N+ E++ D D Q +K LWGLVVCH+T+PRFVPF
Sbjct: 319 PHSCHAQYMANMDSIASLVLAVVVNDNEEDGDTDAVQPQKTERLWGLVVCHNTTPRFVPF 378
Query: 374 PLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRDSPVGIVTQTPNVMD 433
PLRYA EFL QVF V+KE+EL Q+ EK+IL L ML+RD+P+GI +++PN+MD
Sbjct: 379 PLRYAREFLPQVFADHVHKEIELEYQIIEKNILHHPGHLLCMLMRDAPLGIASESPNIMD 438
Query: 434 LVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAGYPGALAL 493
LVKCDGAAL YR K+W LGVTP+E QI++IA WL EYH ST STDSL +AG+P AL+L
Sbjct: 439 LVKCDGAALIYRNKVWRLGVTPSEPQIREIALWLSEYHMDSTSFSTDSLFDAGFPSALSL 498
Query: 494 GDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGGRKMHPRSSFKAFLEVV 553
GD VCG+A+V++T+KD +FWFRSHTA EI+WGGAKH++G KD R+MHPRSSFKAFLEVV
Sbjct: 499 GDVVCGMASVRVTAKDMVFWFRSHTAAEIRWGGAKHEAGEKDDSRRMHPRSSFKAFLEVV 558
Query: 554 KQRSLPWEDVEMDAIHSLQLILRGSLQDEVAE---DSKMI------VNVPSVDD-RIEKI 603
K RSLPW++ EMDAIHSLQ+ILR + +++ ++K I + + ++D +IE++
Sbjct: 559 KARSLPWKEYEMDAIHSLQIILRNAFKEDTESLDLNAKAINTRLRDLKIEGINDLKIERM 618
Query: 604 DELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGD 663
EL +T+E+VRL TA VPILAVD G VNGWN K AELTGL + +A G L+ LV
Sbjct: 619 QELEAVTSEIVRLDYTATVPILAVDVDGLVNGWNIKIAELTGLPIGEATGKHLLTLVEDS 678
Query: 664 SVDVVKNMLSSAFLA 678
S D VK ML+ A L
Sbjct: 679 STDRVKKMLNLALLG 693
>sp|P42499|PHYB_SOYBN Phytochrome B OS=Glycine max GN=PHYB PE=3 SV=1
Length = 1156
Score = 800 bits (2065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/651 (60%), Positives = 482/651 (74%), Gaps = 24/651 (3%)
Query: 44 FDYSTSVNISSSTSNVPSSTVSAYLQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEM 103
F+YS S+ I+S + VP ++AYL ++QRG IQPFG MIAVDE +F +LGYS+NA +M
Sbjct: 64 FNYSESIRIASES--VPEQQITAYLVKIQRGGFIQPFGSMIAVDEPSFRILGYSDNARDM 121
Query: 104 LDLAPHAVPNIEQQD--------------------ALTLGIDVRTLFTSSGAAALQKAAN 143
L + P +VP+++ ++ A LG DVR LFT S A L+KA +
Sbjct: 122 LGITPQSVPSLDDKNDAAFALGPQSVPSLDDKNDAAFALGTDVRALFTHSSALLLEKAFS 181
Query: 144 FGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGALKSYKLAAK 203
E++L+NPI IH +TSGKPFY ILHRIDVG+VIDLEP +D ++ AGA++S + +
Sbjct: 182 AREISLMNPIWIHSRTSGKPFYGILHRIDVGIVIDLEPARTEDPALSIAGAVQSQEALVR 241
Query: 204 AISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLG 263
AIS+LQSLPS ++ LLCD +V V +LTGYDRVMVYKFHEDEHGEVV+E +RPDLEPY+G
Sbjct: 242 AISQLQSLPSADVKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVSESKRPDLEPYIG 301
Query: 264 FHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHAR 323
HYPATDIPQASRFL +N+VRMI DC A V+V+QD+ L QPL L GSTL APHGCHA+
Sbjct: 302 LHYPATDIPQASRFLFKQNRVRMIVDCHASAVRVVQDEALVQPLCLVGSTLGAPHGCHAQ 361
Query: 324 YMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVPFPLRYACEFLI 383
YM NMGSIASLVM+V IN DE +LWGLVVCHHTS R +PFPLRYACEFL+
Sbjct: 362 YMANMGSIASLVMAVIIN-GNDEEGVGGRSSMRLWGLVVCHHTSARCIPFPLRYACEFLM 420
Query: 384 QVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRDSPVGIVTQTPNVMDLVKCDGAALY 443
Q FG+Q+N E++L+AQ EK +LRTQT+LCDMLLRDSP GIVTQ+P++MDLVKCDGAALY
Sbjct: 421 QAFGLQLNMELQLAAQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALY 480
Query: 444 YRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAGYPGALALGDAVCGIAAV 503
++G + LGVTPTE QI+DI EWLL +H STGLSTDSL +AGYPG LG G
Sbjct: 481 FQGNYYPLGVTPTEAQIRDIIEWLLAFHGDSTGLSTDSLGDAGYPGLPRLGMQFVGWQVA 540
Query: 504 KITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDGGRKMHPRSSFKAFLEVVKQRSLPWEDV 563
IT KDFLFWFRSHTAKEIKWGGAK + G++MHP SSFKAFLEVVK RSLPWE+
Sbjct: 541 YITEKDFLFWFRSHTAKEIKWGGAKLILRTRMMGQRMHPLSSFKAFLEVVKSRSLPWENA 600
Query: 564 EMDAIHSLQLILRGSLQDEVAEDSKMIVNVPSVDDRIEKIDELRIITNEMVRLIETAAVP 623
EMDAIHSLQLILR S +D +SK +V+ + ++ +DEL + EMVRLIETA P
Sbjct: 601 EMDAIHSLQLILRDSFKDAEHRNSKAVVDPHVSEQELQGVDELSSVAREMVRLIETATAP 660
Query: 624 ILAVDASGNVNGWNSKAAELTGLTVDQAIGTALV-DLVAGDSVDVVKNMLS 673
I AVD G+VNGWN+K +ELTGL V++A+G +LV DLV +S + V +LS
Sbjct: 661 IFAVDVDGHVNGWNAKVSELTGLPVEEAMGKSLVHDLVFKESEETVNKLLS 711
>sp|P42498|PHYE_ARATH Phytochrome E OS=Arabidopsis thaliana GN=PHYE PE=1 SV=2
Length = 1112
Score = 765 bits (1976), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/681 (55%), Positives = 483/681 (70%), Gaps = 33/681 (4%)
Query: 8 KTNYSRSSSARSKQNARVAAQTSIDAKLAEDFDES-----DFDYSTSVNISSSTSNVPSS 62
+++ S +S+ + + AQ S+DA L DF +S F+YS SV S ++VP
Sbjct: 4 ESSSSAASNMKPQPQKSNTAQYSVDAALFADFAQSIYTGKSFNYSKSV--ISPPNHVPDE 61
Query: 63 TVSAYLQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDAL-- 120
++AYL +QRG L+QPFGC+IAV+E +F +LG S+N+ + L L ++P+
Sbjct: 62 HITAYLSNIQRGGLVQPFGCLIAVEEPSFRILGLSDNSSDFLGLL--SLPSTSHSGEFDK 119
Query: 121 ---TLGIDVRTLFTSSGAAALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVI 177
+GID RTLFT S A+L KAA+F E++LLNP+L+H +T+ KPFYAILHRID G+V+
Sbjct: 120 VKGLIGIDARTLFTPSSGASLSKAASFTEISLLNPVLVHSRTTQKPFYAILHRIDAGIVM 179
Query: 178 DLEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVM 237
DLEP D +T AGA++S KLA +AISRLQSLP G+I LCD +V +V LTGYDRVM
Sbjct: 180 DLEPAKSGDPALTLAGAVQSQKLAVRAISRLQSLPGGDIGALCDTVVEDVQRLTGYDRVM 239
Query: 238 VYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKV 297
VY+FHED+HGEVV+E RR DLEPYLG HYPATDIPQA+RFL +N+VRMICDC A PVKV
Sbjct: 240 VYQFHEDDHGEVVSEIRRSDLEPYLGLHYPATDIPQAARFLFKQNRVRMICDCNATPVKV 299
Query: 298 IQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKL 357
+Q ++L +PL L STLRAPHGCH +YM NMGS+ASL +++ + + KL
Sbjct: 300 VQSEELKRPLCLVNSTLRAPHGCHTQYMANMGSVASLALAIVVKGKDSS---------KL 350
Query: 358 WGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLL 417
WGLVV HH SPR+VPFPLRYACEFL+Q FG+Q+ E++L++QL EK +RTQT+LCDMLL
Sbjct: 351 WGLVVGHHCSPRYVPFPLRYACEFLMQAFGLQLQMELQLASQLAEKKAMRTQTLLCDMLL 410
Query: 418 RDSPVGIVTQTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYH-RGSTG 476
RD+ IVTQ+P +MDLVKCDGAALYY+GK WL+GVTP E Q+KD+ WL+E H STG
Sbjct: 411 RDTVSAIVTQSPGIMDLVKCDGAALYYKGKCWLVGVTPNESQVKDLVNWLVENHGDDSTG 470
Query: 477 LSTDSLVEAGYPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKHDSGGKDG 536
L+TDSLV+AGYPGA++LGDAVCG+AA +SKD+L WFRS+TA IKWGGAKH KD
Sbjct: 471 LTTDSLVDAGYPGAISLGDAVCGVAAAGFSSKDYLLWFRSNTASAIKWGGAKHHPKDKDD 530
Query: 537 GRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVAEDSKMIVNVPSV 596
+MHPRSSF AFLEV K RSLPWE E+DAIHSL+LI+R S V S
Sbjct: 531 AGRMHPRSSFTAFLEVAKSRSLPWEISEIDAIHSLRLIMRESFTSSRP--------VLSG 582
Query: 597 DDRIEKIDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTAL 656
+ +EL EMVR+IETA PI VD+SG +NGWN K AE+TGL +A+G +L
Sbjct: 583 NGVARDANELTSFVCEMVRVIETATAPIFGVDSSGCINGWNKKTAEMTGLLASEAMGKSL 642
Query: 657 VD-LVAGDSVDVVKNMLSSAF 676
D +V +S ++++L A
Sbjct: 643 ADEIVQEESRAALESLLCKAL 663
>sp|P06595|PHYA5_AVESA Phytochrome A type 5 (Fragment) OS=Avena sativa GN=PHYA5 PE=1 SV=3
Length = 495
Score = 589 bits (1518), Expect = e-167, Method: Compositional matrix adjust.
Identities = 293/477 (61%), Positives = 359/477 (75%), Gaps = 12/477 (2%)
Query: 22 NARVAAQTSIDAKLAEDFDES--DFDYSTSVNISSSTSNVP---SSTVSAYLQRVQRGRL 76
ARV AQT++DA+L +++ES FDYS V V S V AYLQ +Q+G+L
Sbjct: 19 QARVLAQTTLDAELNAEYEESGDSFDYSKLVEAQRDGPPVQQGRSEKVIAYLQHIQKGKL 78
Query: 77 IQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAA 136
IQ FGC++A+DE++F V+ +SENAPEML HAVP+++ L +G +VR+LF+ GA
Sbjct: 79 IQTFGCLLALDEKSFNVIAFSENAPEMLTTVSHAVPSVDDPPRLGIGTNVRSLFSDQGAT 138
Query: 137 ALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGALK 196
AL KA F +V+LLNPIL+ CKTSGKPFYAI+HR LV+D EPV P + P TAAGAL+
Sbjct: 139 ALHKALGFADVSLLNPILVQCKTSGKPFYAIVHRATGCLVVDFEPVKPTEFPATAAGALQ 198
Query: 197 SYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRP 256
SYKLAAKAIS++QSLP G++ +LC+ +V EV DLTGYDRVM YKFHED+HGEV +E +P
Sbjct: 199 SYKLAAKAISKIQSLPGGSMEMLCNTVVKEVFDLTGYDRVMAYKFHEDDHGEVFSEITKP 258
Query: 257 DLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRA 316
LEPYLG HYPATDIPQA+RFL MKNKVRMICDC A +KVI+ + L +SLCGS LRA
Sbjct: 259 GLEPYLGLHYPATDIPQAARFLFMKNKVRMICDCRARSIKVIEAEALPFDISLCGSALRA 318
Query: 317 PHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQ------GRKLWGLVVCHHTSPRF 370
PH CH +YMENM SIASLVM+V +NE E++ + + EQ +KLWGL+VCHH SPR+
Sbjct: 319 PHSCHLQYMENMNSIASLVMAVVVNENEEDDEAESEQPAQQQKKKKLWGLLVCHHESPRY 378
Query: 371 VPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRD-SPVGIVTQTP 429
VPFPLRYACEFL QVF V VN+E EL QLREK+IL+ QT+L DML R+ SP+ IV+ P
Sbjct: 379 VPFPLRYACEFLAQVFAVHVNREFELEKQLREKNILKMQTMLSDMLFREASPLTIVSGNP 438
Query: 430 NVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAG 486
N+MDLVKCDGAAL Y GK+W L PTE QI DIA WL + HR STGLSTDSL +AG
Sbjct: 439 NIMDLVKCDGAALLYGGKVWRLRNAPTESQIHDIAFWLSDVHRDSTGLSTDSLHDAG 495
>sp|Q55168|PHY1_SYNY3 Phytochrome-like protein cph1 OS=Synechocystis sp. (strain PCC 6803
/ Kazusa) GN=cph1 PE=1 SV=1
Length = 748
Score = 266 bits (681), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 166/523 (31%), Positives = 267/523 (51%), Gaps = 49/523 (9%)
Query: 71 VQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLF 130
+ LIQP G ++ + E + T+ S N +L +P + LG + +F
Sbjct: 20 IHTAHLIQPHGLVVVLQEPDLTISQISANCTGILGRSPEDL----------LGRTLGEVF 69
Query: 131 TSSGAAALQKAANFGEVNLLNPILIHCKTSGKPFY---AILHRIDVGLVI-DLEPV-NPD 185
S +Q G+++ LNP + + G F + HR GL++ +LEP D
Sbjct: 70 DSFQIDPIQSRLTAGQISSLNPSKLWARVMGDDFVIFDGVFHRNSDGLLVCELEPAYTSD 129
Query: 186 DVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDE 245
++P L Y +A A++RL+ N+ DV+V EV +TG+DRVM+Y+F E+
Sbjct: 130 NLPF-----LGFYHMANAALNRLRQ--QANLRDFYDVIVEEVRRMTGFDRVMLYRFDENN 182
Query: 246 HGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDC--LAPPVKVIQDKKL 303
HG+V+AE +R D+EPYLG HYP +DIPQ +R L + N +R+I D +A P+ +
Sbjct: 183 HGDVIAEDKRDDMEPYLGLHYPESDIPQPARRLFIHNPIRVIPDVYGVAVPLTPAVNPST 242
Query: 304 DQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVC 363
++ + L S LR+ + CH Y++NMG ASL +S+ + LWGL+ C
Sbjct: 243 NRAVDLTESILRSAYHCHLTYLKNMGVGASLTISLI-------------KDGHLWGLIAC 289
Query: 364 HHTSPRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLR--DSP 421
HH +P+ +PF LR ACEF +V ++ + + + + VL D + D
Sbjct: 290 HHQTPKVIPFELRKACEFFGRVVFSNISAQEDTETFDYRVQLAEHEAVLLDKMTTAADFV 349
Query: 422 VGIVTQTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDS 481
G+ ++ L GAA+ + KL L+G TP E+ ++ + +W LE T S
Sbjct: 350 EGLTNHPDRLLGLTGSQGAAICFGEKLILVGETPDEKAVQYLLQW-LENREVQDVFFTSS 408
Query: 482 LVEAGYPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGG---AKHDSGGKDGGR 538
L + YP A+ G+ A+ I +FL WFR + + WGG +++ +DG
Sbjct: 409 LSQI-YPDAVNFKSVASGLLAIPIARHNFLLWFRPEVLQTVNWGGDPNHAYEATQEDGKI 467
Query: 539 KMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQ-----LILR 576
++HPR SF + E+V+ +SLPW+ VE+ + +L+ LILR
Sbjct: 468 ELHPRQSFDLWKEIVRLQSLPWQSVEIQSALALKKAIVNLILR 510
>sp|Q9LCC2|PHYA_NOSS1 Cyanobacterial phytochrome A OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=aphA PE=3 SV=1
Length = 765
Score = 256 bits (654), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 163/526 (30%), Positives = 270/526 (51%), Gaps = 51/526 (9%)
Query: 77 IQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAA 136
IQP G ++ ++E +L S N +L + NI Q+ + L S
Sbjct: 26 IQPHGVLLVLEEPGLKILQVSNNTWGILGINAE---NILQKK-------LEDLLDSFQIE 75
Query: 137 ALQKAANFGEVNLLNPILIHCKTSGKP---FYAILHRIDVG-LVIDLEP-VNPDDVPVTA 191
+Q + G + +NP I + G F A+ HR G L+++LEP + +++P
Sbjct: 76 RIQSGLSSGNLEFINPTKIWIRKKGDDYAVFDAVFHRNTEGFLILELEPAITQENIPF-- 133
Query: 192 AGALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVA 251
L Y LA +I++LQ + N+ C ++V EV +T +DRVM+YKF +D HG V+A
Sbjct: 134 ---LSFYHLAKASINQLQK--TANLRDFCQIIVQEVRKVTDFDRVMLYKFDDDGHGSVIA 188
Query: 252 ECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQ--DKKLDQPLSL 309
E + LEPYLG HYP +DIP+ +R L + N +R+I + A +++I + D+P+ L
Sbjct: 189 EEKLDSLEPYLGLHYPESDIPKPARKLFISNSIRVIPNAQAQAIQMIPALNPVSDRPVDL 248
Query: 310 CGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPR 369
S LR+ CH Y+ NMG ASL +S+ + KLWGL+ CHH S +
Sbjct: 249 TNSILRSAANCHLEYLHNMGVGASLTISLI-------------KDNKLWGLIACHHLSAK 295
Query: 370 FVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRDSPV--GIVTQ 427
+V + LR ACEFL +V +++ E ++ Q++L + + ++ G++
Sbjct: 296 YVSYELRKACEFLGRVIFAEISAREETEDYDYRMNLTHIQSLLVEYMSQEDNFVDGLIKH 355
Query: 428 TPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAGY 487
P+++DL GAA+ + L+G TP E + + +W L+ + TDSL + Y
Sbjct: 356 QPSLLDLTSAQGAAVCFGDHCTLIGETPKAEDLVFLVQW-LKNNVEEEVFYTDSLPQV-Y 413
Query: 488 PGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKH---DSGGKDGGRKMHPRS 544
P A + G+ A+ I+ ++++ WFR + + WGG + + DG ++ PR
Sbjct: 414 PDAERYKNVASGLLAIPISQRNYVLWFRPEVIQTVNWGGDPNQPFEVNKLDGNVRLCPRK 473
Query: 545 SFKAFLEVVKQRSLPWEDVEMDAIHSLQ-----LILRGSLQDEVAE 585
SF+ + E V+ SLPW VE+ A L+ ++LR + DE+A+
Sbjct: 474 SFELWKETVRLTSLPWRYVEIRAALELRKAIVNIVLRQA--DELAQ 517
>sp|Q9R6X3|PHYB_NOSS1 Cyanobacterial phytochrome B OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=bphB PE=3 SV=1
Length = 751
Score = 242 bits (618), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 163/526 (30%), Positives = 262/526 (49%), Gaps = 50/526 (9%)
Query: 76 LIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGA 135
LIQP G ++ + E + T+L S N +L P + L + L +
Sbjct: 27 LIQPHGVLLVLQEVDLTILQVSNNTFNILGRHPEQL----------LNQHLSCLLEAEQL 76
Query: 136 AALQKAANFGEVNLLNPI--LIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAG 193
+ L+ ++ ++NP+ +I F I HR + L+++LE N D
Sbjct: 77 SLLKDCLAQEDLQIINPLEFIIKSHNESISFDVIAHRSNNLLILELE-ANLSD---KTHS 132
Query: 194 ALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAEC 253
+ Y L A+ +LQ + + + +L EV +TG+DRVMVY+F E +G+V+AE
Sbjct: 133 FFRFYHLVKLAMLKLQG--TATTTEISQILAQEVRKITGFDRVMVYRFDEQWNGKVIAEV 190
Query: 254 RRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKV--IQDKKLDQPLSLCG 311
+ L YLG +YPA+DIPQ +R L +N +R+I D PV + I + DQPL L
Sbjct: 191 KPEYLTSYLGLNYPASDIPQQARKLYSQNWLRLIPDAKYQPVPIVPINNPLNDQPLDLSR 250
Query: 312 STLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFV 371
S LR+ H YM+NMG AS+ +S+ N+ KLWGL+ CHH SP+++
Sbjct: 251 SVLRSVSPLHIEYMQNMGVTASMSISIMKNQ-------------KLWGLIACHHQSPKYI 297
Query: 372 PFPLRYACEFLIQVFGVQV-----NKEVELSAQLREKHILRTQTVLCDMLLRDSPVGIVT 426
P+ +R ACEFL Q+ V++ +++ E Q++ H Q + + D ++
Sbjct: 298 PYEIRSACEFLGQMTSVEMSAKEDSEDTEDKIQVKSVHSKLVQYMSAE---NDFINALID 354
Query: 427 QTPNVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAG 486
PN++DLVK GAA+ + G +G P I+ + EW+ + + +TDSL
Sbjct: 355 HQPNILDLVKAQGAAVCFNGNSCTVGQVPPMPDIQVLVEWMSQ-NIHEEIFATDSLATV- 412
Query: 487 YPGALALGDAVCGIAAVKI--TSKDFLFWFRSHTAKEIKWGGAKHDSGG--KDGGRKMHP 542
YP A L D G+ A+ I + K+++ WFR + + WGG H +G ++ P
Sbjct: 413 YPDAEKLRDVASGLIALSISRSQKNYILWFRPEVVRTVDWGGNPHKPVEVIANGEIRLSP 472
Query: 543 RSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSL---QDEVAE 585
R SF + E V +S PW+ E++A L+ + G + DE+A+
Sbjct: 473 RKSFDLWKETVLLKSQPWKSHEVNAALELRSAIIGIVLQKADELAQ 518
>sp|Q9HWR3|BPHY_PSEAE Bacteriophytochrome OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=bphP PE=1 SV=1
Length = 728
Score = 182 bits (462), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 130/415 (31%), Positives = 201/415 (48%), Gaps = 49/415 (11%)
Query: 194 ALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAEC 253
++ S+ L A+ I L + SLL +V +E+ +TGYDRVM Y+F D+ GEVVAE
Sbjct: 119 SITSFTLNAQRIIAQVQLHNDTASLLSNV-TDELRRMTGYDRVMAYRFRHDDSGEVVAES 177
Query: 254 RRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVIQ--DKKLDQPLSLCG 311
RR DLE YLG YPA+DIP +R L ++N +R+I D P++V + + ++ L
Sbjct: 178 RREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMRVFPALNPETNESFDLSY 237
Query: 312 STLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFV 371
S LR+ H Y+ NMG AS+ +S+ + G KLWGL CHH SP+ +
Sbjct: 238 SVLRSVSPIHCEYLTNMGVRASMSISIVV-------------GGKLWGLFSCHHMSPKLI 284
Query: 372 PFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQT-----VLCDMLLRDSPVGIVT 426
P+P+R + Q+F + VE Q R +LR T + D G +
Sbjct: 285 PYPVRMS----FQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALA 340
Query: 427 QTPN-VMDLVKCDGAALYYRGK-LWLLGVTPTEEQIKDIAEWLLE------YHRGSTGLS 478
+ + L+ CDGA + G+ L + G E Q ++ + L YH +
Sbjct: 341 HPDDGIAALIPCDGALVMLGGRTLSIRG--DFERQAGNVLQRLQRDPERDIYHTDNWPQP 398
Query: 479 TDSLVEAGYPGALALGDAVCGIAAVKITSKD--FLFWFRSHTAKEIKWGGAKHD--SGGK 534
++ + G CG+ A++ ++ ++FWFR I+WGG + G
Sbjct: 399 SEDSPDGG---------DCCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGKPEKLLTIGP 449
Query: 535 DGGRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVAEDSKM 589
G R + PR SF+A+ EVV+ S PW + ++ L+L L + AE +M
Sbjct: 450 SGPR-LTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMELCLNHAAEVDRM 503
>sp|Q9RZA4|BPHY_DEIRA Bacteriophytochrome OS=Deinococcus radiodurans (strain ATCC 13939 /
DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB
9279 / R1 / VKM B-1422) GN=bphP PE=1 SV=1
Length = 755
Score = 173 bits (439), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 148/517 (28%), Positives = 233/517 (45%), Gaps = 53/517 (10%)
Query: 77 IQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAA 136
IQP G ++ D + VL S NA L Q+ + G + L A
Sbjct: 35 IQPHGALLTADGHSGEVLQMSLNAATFLG----------QEPTVLRGQTLAALLPEQWPA 84
Query: 137 ALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGALK 196
LQ A G + L + +HR+ L+++ EP D T AL+
Sbjct: 85 -LQAALPPGCPDALQYRATLDWPAAGHLSLTVHRVGELLILEFEPTEAWDS--TGPHALR 141
Query: 197 SYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRP 256
+ A L+S P N+ L +V V +LTG+DRVM+YKF D GEV+AE RR
Sbjct: 142 NAMFA------LESAP--NLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARRE 193
Query: 257 DLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAP--PVKVIQDKKLDQPLSLCGSTL 314
L +LG +PA+DIP +R L ++ +R+ D A P+ + + + + P L G+ L
Sbjct: 194 GLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVL 253
Query: 315 RAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVPFP 374
RA H +Y+ NMG +SL +SV + +LWGL+ CHH +P +P
Sbjct: 254 RATSPMHMQYLRNMGVGSSLSVSVVVGG-------------QLWGLIACHHQTPYVLPPD 300
Query: 375 LRYACEFLIQVFG--VQVNKEVELSA---QLREKHILRTQTVLCDMLLRDSPVGIVTQTP 429
LR E+L ++ VQV + +++A LRE H + D+ +
Sbjct: 301 LRTTLEYLGRLLSLQVQVKEAADVAAFRQSLREHHARVALAAAHSLSPHDT---LSDPAL 357
Query: 430 NVMDLVKCDGAALYYRGKLWLLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAGYPG 489
+++ L++ G L + G+ LG P + + W LE G+ + TD+L + +P
Sbjct: 358 DLLGLMRAGGLILRFEGRWQTLGEVPPAPAVDALLAW-LETQPGAL-VQTDALGQL-WPA 414
Query: 490 ALALGDAVCGIAAVKITS--KDFLFWFRSHTAKEIKWGGAKHDSGGKDGGRKMHPRSSFK 547
L + G+ A+ + + L W R E+ WGGA D D G PR SF
Sbjct: 415 GADLAPSAAGLLAISVGEGWSECLVWLRPELRLEVAWGGATPDQAKDDLG----PRHSFD 470
Query: 548 AFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVA 584
+LE + + PW E++ L+ L G+L + ++
Sbjct: 471 TYLEEKRGYAEPWHPGEIEEAQDLRDTLTGALGERLS 507
>sp|Q55434|PHY2_SYNY3 Phytochrome-like protein cph2 OS=Synechocystis sp. (strain PCC 6803
/ Kazusa) GN=cph2 PE=1 SV=1
Length = 1276
Score = 75.1 bits (183), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 102/235 (43%), Gaps = 36/235 (15%)
Query: 222 VLVNEVSDLTGYDRVMVYKFHEDEHGEVVAEC-RRPDLEPYLGFHYPATDIPQASRFLIM 280
V+V E G DRV +YKF D GEV+AE R L LG H+P DIP +R +
Sbjct: 30 VIVEEARIFLGVDRVKIYKFASDGSGEVLAEAVNRAALPSLLGLHFPVEDIPPQAR-EEL 88
Query: 281 KNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHG-------CHARYMENMGSIAS 333
N+ +MI V V +K LS S +G CH +Y+ MG ++S
Sbjct: 89 GNQRKMIA------VDVAHRRKKSHELSGRISPTEHSNGHYTTVDSCHIQYLLAMGVLSS 142
Query: 334 LVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSP-RFVPFPLR----YACEFLIQVFGV 388
L + V Q ++LWG++ HH+ P RF + E + +
Sbjct: 143 LTVPVM-------------QDQQLWGIMAVHHSKPRRFTEQEWETMALLSKEVSLAITQS 189
Query: 389 QVNKEVELSAQLREKHILRTQTVLCDMLLRDSPVGIVTQTPNVMDLVKCDGAALY 443
Q++++V Q++E + R +T + D P V V+ DGA LY
Sbjct: 190 QLSRQVH-QQQVQEALVQRLETTVAQY--GDRPETWQYALETVGQAVEADGAVLY 241
>sp|C4LAA1|TYPH_TOLAT Putative thymidine phosphorylase OS=Tolumonas auensis (strain DSM
9187 / TA4) GN=Tola_2482 PE=3 SV=1
Length = 505
Score = 33.1 bits (74), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 133 SGAAALQKAANFG-EVNLLNPIL-IHCKTSGKPFYAILHRIDVGLVIDLEP 181
S AA +Q G EV P++ +H +TSG+ YA+ + D+G ++++EP
Sbjct: 455 SSAAGIQLQVRLGDEVTSGQPLMFLHAQTSGEMAYALAYVHDIGDIVNIEP 505
>sp|Q64NK6|EFG_BACFR Elongation factor G OS=Bacteroides fragilis (strain YCH46) GN=fusA
PE=3 SV=1
Length = 705
Score = 32.7 bits (73), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 545 SFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVAE-DSKMIVNVPSVDDRI-EK 602
+FK ++++K +++ W D M A ++++ I +L DE E KM+ V DD + EK
Sbjct: 174 NFKGLVDLIKMKAIYWHDETMGADYTIEEI-PANLVDEANEWRDKMLEKVAEFDDALMEK 232
Query: 603 -IDELRIITNEMV------RLIETAAVPIL 625
D+ IT E V ++ A VP+L
Sbjct: 233 YFDDPSTITEEEVLRALRNATVQMAVVPML 262
>sp|Q5L8A7|EFG_BACFN Elongation factor G OS=Bacteroides fragilis (strain ATCC 25285 /
NCTC 9343) GN=fusA PE=3 SV=1
Length = 705
Score = 32.7 bits (73), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 545 SFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVAE-DSKMIVNVPSVDDRI-EK 602
+FK ++++K +++ W D M A ++++ I +L DE E KM+ V DD + EK
Sbjct: 174 NFKGLVDLIKMKAIYWHDETMGADYTIEEI-PANLVDEANEWRDKMLEKVAEFDDALMEK 232
Query: 603 -IDELRIITNEMV------RLIETAAVPIL 625
D+ IT E V ++ A VP+L
Sbjct: 233 YFDDPSTITEEEVLRALRNATVQMAVVPML 262
>sp|P73211|ASPA_SYNY3 Probable aspartoacylase OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=slr1705 PE=3 SV=1
Length = 288
Score = 32.7 bits (73), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 10/81 (12%)
Query: 172 DVGLVIDLEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLT 231
++GL I+L PV P V A A K+ + A+ ++ LQ+ SGN+ + V + D
Sbjct: 157 ELGLTIELGPV-PQGVYDPTAIA-KTQRTLARILAYLQASTSGNVPAADNCTVYQQIDTI 214
Query: 232 GYDRVMVYKFHEDEHGEVVAE 252
Y R DE G++VAE
Sbjct: 215 DYPR--------DEQGQIVAE 227
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 246,194,123
Number of Sequences: 539616
Number of extensions: 10475497
Number of successful extensions: 27552
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 27083
Number of HSP's gapped (non-prelim): 329
length of query: 681
length of database: 191,569,459
effective HSP length: 124
effective length of query: 557
effective length of database: 124,657,075
effective search space: 69433990775
effective search space used: 69433990775
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)