Query 005722
Match_columns 681
No_of_seqs 301 out of 1193
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 05:37:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005722.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005722hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eho_A Bacteriophytochrome, PA 100.0 4E-121 1E-125 1054.5 49.5 562 61-679 14-586 (635)
2 3zq5_A Phytochrome-like protei 100.0 4E-121 1E-125 1024.7 41.6 492 59-581 7-510 (520)
3 3nhq_A Bacteriophytochrome; ph 100.0 9E-119 3E-123 1003.3 51.9 477 59-578 4-492 (505)
4 4e04_A Bacteriophytochrome (li 100.0 2.7E-83 9.4E-88 680.2 33.8 302 61-393 9-315 (327)
5 3s7o_A Bacteriophytochrome; bi 100.0 2.4E-83 8.2E-88 682.6 32.2 300 60-396 31-336 (343)
6 2ool_A Sensor protein; bacteri 100.0 3.9E-80 1.3E-84 661.2 36.5 301 62-393 23-328 (337)
7 4glq_A Methyl-accepting chemot 100.0 3.7E-34 1.3E-38 277.9 18.1 149 205-390 3-152 (171)
8 2k2n_A Sensor protein, SYB-CPH 100.0 3.1E-29 1.1E-33 239.8 17.5 163 216-391 1-166 (172)
9 2lb5_A Sensor histidine kinase 100.0 8.3E-28 2.8E-32 236.1 18.3 180 197-391 14-196 (208)
10 3p01_A Two-component response 99.1 1.2E-09 4.2E-14 104.4 17.1 150 197-390 28-177 (184)
11 1ykd_A Adenylate cyclase; GAF 99.1 3.6E-08 1.2E-12 105.4 28.0 321 201-582 11-377 (398)
12 2zmf_A CAMP and CAMP-inhibited 99.0 8.3E-09 2.8E-13 97.0 17.8 154 199-391 13-175 (189)
13 1d06_A Nitrogen fixation regul 99.0 3.4E-10 1.2E-14 100.9 7.1 72 604-675 9-80 (130)
14 2r78_A Sensor protein; sensory 99.0 1.3E-09 4.3E-14 96.1 8.3 71 605-675 5-75 (117)
15 3oov_A Methyl-accepting chemot 99.0 3E-08 1E-12 91.4 17.7 153 204-390 7-160 (169)
16 3k2n_A Sigma-54-dependent tran 98.9 6.8E-08 2.3E-12 90.3 19.4 159 198-391 5-165 (177)
17 3ci6_A Phosphoenolpyruvate-pro 98.9 1.1E-07 3.8E-12 86.7 19.7 154 198-391 9-162 (171)
18 3trc_A Phosphoenolpyruvate-pro 98.9 7.2E-08 2.5E-12 89.0 17.4 155 196-390 5-159 (171)
19 3f1p_B ARYL hydrocarbon recept 98.9 1.6E-09 5.6E-14 94.8 5.4 63 614-676 5-67 (121)
20 3mxq_A Sensor protein; PSI2, M 98.9 4E-09 1.4E-13 100.1 8.2 72 605-677 16-87 (152)
21 3e0y_A Conserved domain protei 98.9 7.7E-08 2.6E-12 89.5 16.9 148 202-391 18-165 (181)
22 2qyb_A Membrane protein, putat 98.8 5.4E-08 1.8E-12 91.6 15.8 142 213-392 15-158 (181)
23 2gj3_A Nitrogen fixation regul 98.8 7.8E-09 2.7E-13 90.7 8.5 58 611-668 5-62 (120)
24 2vlg_A Sporulation kinase A; h 98.8 3.6E-09 1.2E-13 94.7 5.6 59 615-673 3-61 (111)
25 3bwl_A Sensor protein; structu 98.8 1.3E-08 4.4E-13 89.0 9.0 66 603-670 9-76 (126)
26 2e4s_A CAMP and CAMP-inhibited 98.8 1.4E-07 4.9E-12 88.8 15.6 154 198-391 12-175 (189)
27 3mfx_A Sensory BOX/ggdef famil 98.8 2.9E-09 9.9E-14 97.6 3.7 60 611-670 7-66 (129)
28 3ibj_A CGMP-dependent 3',5'-cy 98.8 1.1E-06 3.6E-11 102.1 25.6 204 199-446 15-223 (691)
29 3fc7_A HTR-like protein, senso 98.7 5.1E-09 1.8E-13 90.6 4.5 67 609-675 17-83 (125)
30 3luq_A Sensor protein; PAS, hi 98.7 1.2E-08 4.2E-13 86.1 6.6 67 611-678 3-69 (114)
31 3olo_A Two-component sensor hi 98.7 1.5E-08 5.1E-13 86.5 7.1 58 610-667 12-69 (118)
32 1mc0_A 3',5'-cyclic nucleotide 98.7 1.9E-07 6.7E-12 98.2 17.1 205 200-446 15-223 (368)
33 2kdk_A ARYL hydrocarbon recept 98.7 9.1E-09 3.1E-13 89.4 4.7 63 615-677 7-69 (121)
34 2vv6_A FIXL, sensor protein FI 98.7 2.1E-08 7.2E-13 87.6 6.3 57 619-675 1-57 (119)
35 3f1p_A Endothelial PAS domain- 98.7 2E-08 6.9E-13 87.0 5.9 59 619-677 7-65 (117)
36 3fg8_A Uncharacterized protein 98.6 4.9E-09 1.7E-13 92.4 1.1 73 604-676 5-77 (118)
37 3hcy_A Putative two-component 98.6 2.5E-07 8.4E-12 84.6 11.8 135 214-390 2-137 (151)
38 4hia_A LOV protein; PAS, HTH, 98.6 8.7E-08 3E-12 89.1 8.4 67 610-676 6-75 (176)
39 3mjq_A Uncharacterized protein 98.6 2.2E-08 7.4E-13 86.3 3.8 65 614-678 2-66 (126)
40 3eeh_A Putative light and redo 98.6 3.5E-08 1.2E-12 83.5 4.8 74 605-678 5-81 (125)
41 3nja_A Probable ggdef family p 98.6 5E-08 1.7E-12 83.4 5.1 72 607-678 3-76 (125)
42 3p7n_A Sensor histidine kinase 98.5 9.8E-08 3.4E-12 95.5 6.9 71 606-676 58-131 (258)
43 4eet_B Phototropin-2; LOV, blu 98.5 2E-07 6.9E-12 78.4 6.9 61 616-676 2-65 (115)
44 3lyx_A Sensory BOX/ggdef domai 98.5 2.3E-07 7.8E-12 77.8 7.1 67 610-676 6-72 (124)
45 2pr5_A Blue-light photorecepto 98.5 1.4E-07 4.7E-12 84.0 6.0 52 615-666 3-57 (132)
46 1ll8_A PAS kinase; PAS domain, 98.5 9.1E-08 3.1E-12 82.8 4.6 53 619-671 6-59 (114)
47 1mc0_A 3',5'-cyclic nucleotide 98.5 5.6E-06 1.9E-10 87.0 18.9 147 204-391 186-336 (368)
48 3ue6_A Aureochrome1; PAS/LOV d 98.5 1.2E-07 4E-12 86.3 5.0 68 609-676 33-103 (166)
49 3o5y_A Sensor protein; GAF dom 98.4 4.2E-06 1.4E-10 80.1 16.0 137 214-391 4-142 (165)
50 3mqq_A Transcriptional regulat 98.4 2E-07 6.7E-12 81.2 6.0 50 613-663 5-54 (120)
51 3ewk_A Sensor protein; PAS dom 98.4 3.1E-07 1.1E-11 90.4 8.2 66 611-676 111-176 (227)
52 2w0n_A Sensor protein DCUS; si 98.4 1.1E-07 3.8E-12 80.8 3.9 61 604-664 8-71 (118)
53 3icy_A Sensor protein; sensory 98.4 1E-07 3.6E-12 81.2 3.6 68 610-677 3-72 (118)
54 1v9y_A Heme PAS sensor protein 98.4 2E-07 7E-12 84.2 5.4 71 606-676 35-105 (167)
55 2z6d_A Phototropin-2; PAS-fold 98.4 4.9E-07 1.7E-11 76.2 7.2 66 610-675 5-73 (130)
56 3k3c_A Protein RV1364C/MT1410; 98.4 2.7E-07 9.1E-12 84.0 5.7 64 611-676 17-81 (158)
57 1nwz_A PYP, photoactive yellow 98.4 2.5E-07 8.5E-12 85.4 4.7 47 614-660 20-66 (125)
58 2w3g_A DOSS, two component sen 98.4 2.8E-06 9.5E-11 76.5 11.6 139 213-391 4-144 (153)
59 2qkp_A Uncharacterized protein 98.4 3.2E-07 1.1E-11 86.7 5.4 67 611-678 19-88 (151)
60 3b33_A Sensor protein; structu 98.3 3.4E-07 1.2E-11 78.7 4.8 50 614-663 10-59 (115)
61 4hi4_A Aerotaxis transducer AE 98.3 4.2E-07 1.4E-11 80.3 5.4 52 611-662 5-68 (121)
62 3mr0_A Sensory box histidine k 98.3 5.9E-07 2E-11 81.4 6.4 73 605-677 3-77 (142)
63 3t50_A Blue-light-activated hi 98.3 4.6E-07 1.6E-11 78.7 5.2 61 616-676 2-65 (128)
64 1mzu_A PPR; photoactive yellow 98.3 3.7E-07 1.3E-11 84.6 4.5 46 615-660 26-71 (129)
65 3kx0_X Uncharacterized protein 98.3 5.9E-07 2E-11 85.4 5.0 65 610-676 36-101 (185)
66 2jhe_A Transcription regulator 98.2 2E-06 7E-11 81.7 8.3 57 609-665 78-134 (190)
67 2vjw_A GAF-B, GAF family prote 98.2 3.9E-05 1.3E-09 71.7 16.6 125 215-388 1-130 (149)
68 1ykd_A Adenylate cyclase; GAF 98.2 4.3E-05 1.5E-09 81.4 19.2 139 214-391 213-375 (398)
69 3a0s_A Sensor protein; PAS-fol 98.2 2.3E-06 8E-11 68.5 7.0 40 620-659 1-40 (96)
70 1n9l_A PHOT-LOV1, putative blu 98.2 1.7E-06 5.8E-11 74.9 6.3 46 620-665 2-50 (109)
71 3sw1_A Sensory box protein; li 98.2 2.1E-06 7.2E-11 77.8 6.3 65 611-675 25-92 (162)
72 3d72_A Vivid PAS protein VVD; 98.1 2E-06 6.9E-11 77.1 5.7 47 616-663 31-80 (149)
73 2v0u_A NPH1-1, LOV2; kinase, t 98.1 2E-06 7E-11 74.3 4.7 63 613-675 4-69 (146)
74 2wkq_A NPH1-1, RAS-related C3 98.1 2.5E-06 8.7E-11 88.4 6.1 61 615-675 15-78 (332)
75 4f3l_A Mclock, circadian locom 98.1 3.6E-06 1.2E-10 90.2 7.1 62 614-675 89-150 (361)
76 2l0w_A Potassium voltage-gated 98.1 6.8E-06 2.3E-10 70.4 7.4 64 612-675 20-88 (138)
77 3ibj_A CGMP-dependent 3',5'-cy 98.0 7.2E-05 2.5E-09 86.7 17.1 140 214-392 195-337 (691)
78 3vol_A Aerotaxis transducer AE 98.0 4.8E-06 1.6E-10 83.5 5.9 53 610-662 21-85 (233)
79 3h9w_A Diguanylate cyclase wit 97.9 3.8E-06 1.3E-10 72.3 3.2 59 620-678 2-62 (115)
80 3a0r_A Sensor protein; four he 97.9 2.4E-06 8.3E-11 88.8 1.7 55 610-664 7-61 (349)
81 4f3l_B BMAL1B; BHLH, PAS, circ 97.9 1.2E-05 4E-10 87.2 7.0 60 615-674 90-150 (387)
82 3dba_A CONE CGMP-specific 3',5 97.9 0.00021 7.3E-09 68.2 14.8 150 200-388 8-169 (180)
83 3bjc_A CGMP-specific 3',5'-cyc 97.9 1.9E-06 6.4E-11 102.9 0.0 153 200-391 154-318 (878)
84 3cax_A Uncharacterized protein 97.8 1.9E-05 6.5E-10 85.0 6.0 66 611-678 239-304 (369)
85 3mmh_A FRMSR, methionine-R-sul 97.7 0.0012 4.1E-08 63.4 17.3 142 198-387 15-157 (167)
86 4f3l_B BMAL1B; BHLH, PAS, circ 97.7 1.8E-05 6.3E-10 85.7 4.8 59 619-677 276-334 (387)
87 3rty_A Period circadian protei 97.7 3.2E-05 1.1E-09 82.7 5.8 57 621-677 154-210 (339)
88 4dj3_A Period circadian protei 97.7 3.5E-05 1.2E-09 81.7 5.9 56 622-677 175-230 (317)
89 1byw_A Protein (human ERG pota 97.7 7.1E-05 2.4E-09 60.9 6.6 46 622-667 2-52 (110)
90 4dj2_A Period circadian protei 97.6 4.1E-05 1.4E-09 81.2 5.9 58 620-677 175-232 (320)
91 3gdi_A Period circadian protei 97.6 4.4E-05 1.5E-09 80.6 5.7 56 622-677 166-221 (309)
92 4f3l_A Mclock, circadian locom 97.5 4.1E-05 1.4E-09 82.0 4.2 58 620-677 250-307 (361)
93 4dj2_A Period circadian protei 97.5 5.1E-05 1.7E-09 80.5 3.7 68 604-673 21-89 (320)
94 4dj3_A Period circadian protei 97.4 4.2E-05 1.4E-09 81.0 2.2 57 616-672 31-88 (317)
95 3gdi_A Period circadian protei 97.4 7.3E-05 2.5E-09 78.9 3.8 57 616-672 20-77 (309)
96 1vhm_A Protein YEBR; structura 97.3 0.015 5.2E-07 57.1 19.0 140 200-389 30-170 (195)
97 3rty_A Period circadian protei 97.2 0.00015 5.3E-09 77.4 3.9 52 624-675 6-58 (339)
98 1f5m_A GAF; CGMP binding, sign 97.0 0.01 3.5E-07 57.3 14.6 130 213-387 39-174 (180)
99 3ksh_A Putative uncharacterize 96.9 0.027 9.2E-07 53.7 15.8 127 213-387 29-156 (160)
100 2ykf_A Pdtas, probable sensor 95.7 0.00028 9.5E-09 74.1 0.0 48 615-663 174-224 (305)
101 3rfb_A Putative uncharacterize 96.6 0.11 3.8E-06 50.0 18.0 140 198-386 16-156 (171)
102 3bjc_A CGMP-specific 3',5'-cyc 95.2 0.0034 1.2E-07 74.8 0.0 141 214-391 348-507 (878)
103 1oj5_A Steroid receptor coacti 94.0 0.029 9.9E-07 51.9 3.3 54 622-676 8-65 (132)
104 3cit_A Sensor histidine kinase 93.7 1 3.5E-05 42.9 13.5 133 197-392 13-147 (160)
105 1ll8_A PAS kinase; PAS domain, 93.2 0.9 3.1E-05 38.0 11.3 43 82-134 10-52 (114)
106 2ool_A Sensor protein; bacteri 92.5 0.081 2.8E-06 56.4 4.3 50 623-672 44-94 (337)
107 2vlg_A Sporulation kinase A; h 91.3 0.63 2.2E-05 40.6 8.0 52 80-142 9-60 (111)
108 3f1p_B ARYL hydrocarbon recept 85.0 2.5 8.7E-05 35.4 7.5 48 82-140 14-61 (121)
109 4e04_A Bacteriophytochrome (li 83.7 0.57 2E-05 49.6 3.3 51 623-673 31-81 (327)
110 3szt_A QCSR, quorum-sensing co 82.6 32 0.0011 33.8 15.5 128 204-369 8-136 (237)
111 3s7o_A Bacteriophytochrome; bi 79.4 1.2 4.1E-05 47.5 3.8 49 623-672 54-103 (343)
112 3f1p_A Endothelial PAS domain- 75.4 2.6 8.8E-05 35.1 4.2 50 79-139 8-57 (117)
113 3b33_A Sensor protein; structu 74.0 4.3 0.00015 33.4 5.2 40 82-132 19-58 (115)
114 2kdk_A ARYL hydrocarbon recept 72.6 4.8 0.00016 33.4 5.2 45 81-136 14-58 (121)
115 3fg8_A Uncharacterized protein 70.5 6.1 0.00021 33.3 5.4 40 82-132 24-63 (118)
116 2vv6_A FIXL, sensor protein FI 65.3 4.9 0.00017 33.5 3.7 42 82-134 5-46 (119)
117 3mqq_A Transcriptional regulat 62.4 9 0.00031 31.8 4.9 41 79-132 13-53 (120)
118 1n9l_A PHOT-LOV1, putative blu 62.3 11 0.00039 31.1 5.5 51 83-143 6-62 (109)
119 4eet_B Phototropin-2; LOV, blu 61.6 14 0.00046 29.4 5.7 41 83-133 10-52 (115)
120 3fc7_A HTR-like protein, senso 61.1 6 0.0002 32.6 3.4 46 82-138 31-76 (125)
121 1d06_A Nitrogen fixation regul 60.6 6.6 0.00023 33.4 3.7 42 82-134 28-69 (130)
122 3mfx_A Sensory BOX/ggdef famil 60.5 3.8 0.00013 36.4 2.2 42 82-134 19-60 (129)
123 3qp6_A CVIR transcriptional re 59.0 1.3E+02 0.0046 29.9 13.8 132 199-365 22-158 (265)
124 4ew7_A Conjugative transfer: r 58.6 17 0.00058 32.1 5.8 43 612-654 21-63 (127)
125 3mxq_A Sensor protein; PSI2, M 57.1 5.6 0.00019 36.8 2.7 46 82-139 34-79 (152)
126 3luq_A Sensor protein; PAS, hi 56.1 11 0.00037 30.0 4.2 40 82-132 15-54 (114)
127 3zq5_A Phytochrome-like protei 55.8 5.1 0.00018 44.9 2.6 46 623-668 31-77 (520)
128 3d72_A Vivid PAS protein VVD; 55.3 17 0.00058 31.1 5.5 41 82-132 37-79 (149)
129 2w1r_A Spovt, stage V sporulat 53.4 22 0.00074 31.8 6.0 120 219-391 3-122 (123)
130 3nhq_A Bacteriophytochrome; ph 50.6 6.2 0.00021 44.1 2.2 48 623-672 28-76 (505)
131 3mjq_A Uncharacterized protein 49.4 7.1 0.00024 32.0 1.9 43 82-135 11-53 (126)
132 2gj3_A Nitrogen fixation regul 46.1 17 0.0006 30.1 4.0 40 82-132 17-56 (120)
133 3pxp_A Helix-turn-helix domain 45.0 22 0.00076 36.7 5.2 39 607-645 95-133 (292)
134 2pr5_A Blue-light photorecepto 44.2 29 0.00098 29.3 5.1 41 82-132 11-53 (132)
135 3t50_A Blue-light-activated hi 43.6 10 0.00035 31.4 2.0 41 82-132 9-51 (128)
136 3olo_A Two-component sensor hi 43.3 10 0.00035 30.7 1.9 40 82-132 25-64 (118)
137 4hia_A LOV protein; PAS, HTH, 41.7 31 0.001 30.5 5.1 41 83-133 20-62 (176)
138 2qkp_A Uncharacterized protein 41.6 35 0.0012 31.0 5.6 56 62-137 19-77 (151)
139 1byw_A Protein (human ERG pota 40.9 48 0.0016 25.2 5.6 28 83-110 4-33 (110)
140 3a0s_A Sensor protein; PAS-fol 40.0 12 0.00041 28.2 1.8 36 83-129 5-40 (96)
141 3clo_A Transcriptional regulat 38.6 27 0.00092 34.8 4.6 62 603-667 28-98 (258)
142 3ue6_A Aureochrome1; PAS/LOV d 38.3 15 0.00051 31.9 2.3 41 83-133 48-90 (166)
143 3p7n_A Sensor histidine kinase 36.7 66 0.0023 30.8 7.0 42 82-133 75-118 (258)
144 3eeh_A Putative light and redo 36.1 22 0.00075 28.2 2.9 48 82-139 23-72 (125)
145 3lyx_A Sensory BOX/ggdef domai 35.0 29 0.001 27.2 3.5 42 82-134 19-60 (124)
146 2v0u_A NPH1-1, LOV2; kinase, t 34.1 58 0.002 26.4 5.3 42 82-133 14-57 (146)
147 1v9y_A Heme PAS sensor protein 32.9 29 0.00099 29.7 3.3 41 82-133 52-92 (167)
148 2z6d_A Phototropin-2; PAS-fold 31.5 26 0.00088 27.7 2.6 41 82-132 18-60 (130)
149 3k3c_A Protein RV1364C/MT1410; 31.2 37 0.0013 29.2 3.8 48 83-142 30-81 (158)
150 3eea_A GAF domain/HD domain pr 31.0 3.3E+02 0.011 25.3 14.4 137 215-390 13-154 (162)
151 3h9w_A Diguanylate cyclase wit 30.7 45 0.0016 27.1 4.1 30 82-111 5-34 (115)
152 2l0w_A Potassium voltage-gated 29.3 1E+02 0.0035 24.6 6.1 29 82-110 31-61 (138)
153 2q0o_A Probable transcriptiona 29.0 3.9E+02 0.013 25.6 12.2 119 206-366 11-135 (236)
154 3ewk_A Sensor protein; PAS dom 27.0 92 0.0031 29.2 6.1 39 83-132 2-40 (227)
155 4hi4_A Aerotaxis transducer AE 26.9 37 0.0013 28.5 2.9 41 82-133 17-69 (121)
156 3sw1_A Sensory box protein; li 26.8 81 0.0028 26.9 5.2 41 82-132 37-79 (162)
157 3vol_A Aerotaxis transducer AE 25.6 71 0.0024 30.9 5.1 41 82-133 34-86 (233)
158 3lqv_P Splicing factor 3B subu 25.0 33 0.0011 24.9 1.7 21 548-568 11-31 (39)
159 2wkq_A NPH1-1, RAS-related C3 24.3 83 0.0029 31.4 5.5 41 82-132 23-65 (332)
160 1nwz_A PYP, photoactive yellow 23.9 84 0.0029 28.3 4.7 54 80-145 28-86 (125)
161 3ub6_A Chemoreceptor TLPB; hom 23.5 2.2E+02 0.0076 26.6 8.0 45 623-677 71-116 (181)
162 3qp1_A CVIR transcriptional re 22.5 4.6E+02 0.016 24.1 15.4 131 201-367 19-155 (182)
163 1mzu_A PPR; photoactive yellow 22.5 1E+02 0.0035 28.0 5.0 53 80-144 33-90 (129)
164 3kx0_X Uncharacterized protein 21.9 73 0.0025 28.8 4.1 49 82-142 49-101 (185)
165 2w0n_A Sensor protein DCUS; si 21.7 25 0.00084 28.1 0.7 41 83-134 28-71 (118)
166 2hl0_A Threonyl-tRNA synthetas 21.5 93 0.0032 28.9 4.5 29 215-243 52-83 (143)
167 3nja_A Probable ggdef family p 20.5 92 0.0031 24.7 4.0 29 82-111 19-47 (125)
168 2jhe_A Transcription regulator 20.1 37 0.0013 30.9 1.6 40 83-133 93-132 (190)
No 1
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=100.00 E-value=4.3e-121 Score=1054.48 Aligned_cols=562 Identities=27% Similarity=0.472 Sum_probs=493.8
Q ss_pred ccchhhh-hhcccCCCCCCCCceEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCchHHHHHH
Q 005722 61 SSTVSAY-LQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAALQ 139 (681)
Q Consensus 61 ~~~~t~~-~~~I~~pG~IQp~G~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~~~~~l~ 139 (681)
+-++|.| .||||+||+|||||||||+|+++++|++||+|+.++||+++ ++|+++.++++......+.
T Consensus 14 ~~dl~~C~~EpIh~pg~IQp~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~------------~lg~~l~~~~~~~~~~~~~ 81 (635)
T 4eho_A 14 TADLSNCEREEIHLAGSIQPHGALLVVSEPDHRIIQASANAAEFLNLGS------------VLGVPLAEIDGDLLIKILP 81 (635)
T ss_dssp CCCTTTTTSCBCSSCSEECTTEEEEEECTTTCBEEEEETTHHHHHTCSC------------CSSCBSSSSSSSHHHHHGG
T ss_pred CCcCcccccccccCcCcccCCeEEEEEECCCCeEEEEeCcHHhhhCcHh------------hhCCCHHHHcchHHHHHHh
Confidence 3479999 99999999999999999999999999999999999999743 4799999999987766655
Q ss_pred HHhccCCCccCCceeeecc--CCCceEEEEEEee-CCeEEEEeccCCCCCCccchhhhhHHHHHHHHHHHHHhcCCCCCH
Q 005722 140 KAANFGEVNLLNPILIHCK--TSGKPFYAILHRI-DVGLVIDLEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNI 216 (681)
Q Consensus 140 ~~l~~~~~~~~~p~~~~~~--~~~~~f~~~~Hr~-~~~lviElEp~~~~~~~~~~~g~~~~~~l~~~~i~rl~~~~~~~l 216 (681)
.... ....+|+.++++ ..++.|++++||. ++.+||||||..+.. ... .++.++++||++ +.|+
T Consensus 82 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~hr~~~~~li~elE~~~~~~---~~~------~~~~~~~~~i~~--s~~l 147 (635)
T 4eho_A 82 HLDP---TAEGMPVAVRCRIGNPSTEYDGLMHRPPEGGLIIELERAGPPI---DLS------GTLAPALERIRT--AGSL 147 (635)
T ss_dssp GCCS---SSCCCSCEEEEEETTTTEEEEEECCCCSSSSEEEEEECCCSCC---CCC------TTSSSHHHHHHH--CCSH
T ss_pred hhhh---hccCCceeEEEEecCCCceEEEEEEEcCCCEEEEEEEECCCch---hHH------HHHHHHHHHHHh--hCCH
Confidence 4322 223346665543 4568899999995 678999999986532 122 234578999999 7899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCCCCcCCCcCCCCCchHHHHHHHHcCCeEEeecCCCCCce
Q 005722 217 SLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVK 296 (681)
Q Consensus 217 ~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LGlhfPasDIP~qaR~Ly~~n~vR~I~Dv~~~pv~ 296 (681)
++||+++|+|||++|||||||||||++||||+||||++.++++||||+|||++|||+++|+||++|++|+|+|++++||+
T Consensus 148 ~~i~~~~v~evr~l~~~DRv~iy~F~~d~~G~vvaE~~~~~~~s~lg~~~p~~dip~~~r~ly~~~~~r~i~d~~~~~v~ 227 (635)
T 4eho_A 148 RALCDDTALLFQQCTGYDRVMVYRFDEQGHGEVFSERHVPGLESYFGNRYPSSDIPQMARRLYERQRVRVLVDVSYQPVP 227 (635)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEEEECTTCCEEEEEEECCTTCCCCTTCEECSTTSCHHHHHHHHHSCEEEESCSSCCCEE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEcCCCCccccCCccCCcchHHHHHHHHHcCCeEEEecccCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eec--CCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCceeEEEEeecCCCCCCChh
Q 005722 297 VIQ--DKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVPFP 374 (681)
Q Consensus 297 lv~--~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~kLWGLi~cHh~spr~v~~~ 374 (681)
|++ ++.+++|+|||+|+||++||||+|||+||||+|||+|||+++ ++|||||+||||+||+|+++
T Consensus 228 ~~~~~~~~~~~~ldl~~~~~r~~sp~h~~yl~~~~v~asl~vpi~~~-------------~~LWGLl~~h~~~pr~~~~~ 294 (635)
T 4eho_A 228 LEPRLSPLTGRDLDMSGCFLRSMSPIHLQYLKNMGVRATLVVSLVVG-------------GKLWGLVACHHYLPRFIHFE 294 (635)
T ss_dssp EESSBCTTTSSBCCGGGCTTBCCCHHHHHHHHHHTCCEEEEEEEEET-------------TEEEEEEEEEESSCCCCCHH
T ss_pred cccCcCcccCCccccccceecCCCHHHHHHHHhhCcceEEEEEEEEc-------------ceeeeeeeeecCCCCcCCHH
Confidence 997 467789999999999999999999999999999999999998 89999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--ccccccCChhhhhhccCCeEEEEECCeEEEec
Q 005722 375 LRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRDS--PVGIVTQTPNVMDLVKCDGAALYYRGKLWLLG 452 (681)
Q Consensus 375 ~R~a~e~l~q~~s~ql~~~~el~~q~~e~~~~~~~~~l~~~l~~~~--~~~i~~~~~~ll~L~~adGaal~~~~~~~~~G 452 (681)
+|.+|++|++++|.+|+.+..++.+..++++.++++.+++++.+.. +.++.+..++++++++|||+++|++++++++|
T Consensus 295 ~~~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~l~~adg~al~~~~~~~~~G 374 (635)
T 4eho_A 295 LRAICELLAEAIATRITALESFAQSQSELFVQRLEQRMIEAITREGDWRAAIFDTSQSILQPLHADGCALVYEDQIRTIG 374 (635)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCSHHHHSCTTSCSSGGGTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHhcChHHHhhhcCCeEEEEECCEEEEEe
Confidence 9999999999999999877666666667777888888888876543 45788899999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCeeeeeccccccCCCCccccccccccEEEEEeCC--CcEEEEeecCcceEEeecCCCCC
Q 005722 453 VTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAGYPGALALGDAVCGIAAVKITS--KDFLFWFRSHTAKEIKWGGAKHD 530 (681)
Q Consensus 453 ~tP~~~~i~~l~~wl~~~~~~~~~~~td~L~~~~~p~a~~~~~~~~G~lav~i~~--~~~l~wFR~e~~~~v~WaG~p~k 530 (681)
.+|++.++.+|+.|+...+. ..+|+|++|.. .||++..+++.+|||++++|+. ++|++|||+|+.++|+|||+|+|
T Consensus 375 ~~P~~~~i~~l~~wl~~~~~-~~~~~t~~l~~-~~p~~~~~~~~~~G~l~~~i~~~~~~~l~~fR~e~~~~v~WaG~p~~ 452 (635)
T 4eho_A 375 DVPSTQDVREIAGWLDRQPR-AAVTSTASLGL-DVPELAHLTRMASGVVAAPISDHRGEFLMWFRPERVHTVTWGGDPKK 452 (635)
T ss_dssp SCCCHHHHHHHHHHHTTSCC-CSSEEESCHHH-HCGGGGGGHHHHSEEEEEECSSSSSCEEEEEECCTTTTTCSSSCCSC
T ss_pred CCCCHHHHHHHHHHHHhcCC-CcEEEeccccc-cCcchhhhhhhcccEEEEEecCCCCcEEEEeccceeEEEEeccCCCC
Confidence 99999999999999987754 47899999985 6999999999999999999985 69999999999999999999999
Q ss_pred CCCC-CCCCCccCCchhhhHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHhhcccceeecccchhhhhhHHHHHHH
Q 005722 531 SGGK-DGGRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQDEVAEDSKMIVNVPSVDDRIEKIDELRII 609 (681)
Q Consensus 531 ~~~~-~~g~~l~PR~SFe~w~E~v~~~s~pW~~~Ei~aa~~L~l~l~~~l~~~~~~~~~~~~~~~l~~l~l~~~~el~~~ 609 (681)
+... ++|.+|+||+||++|+|+|+++|.||+..|+++|+.|+..+......... ++....++.
T Consensus 453 ~~~~~~~~~~l~PR~SF~~w~e~v~~~s~pW~~~e~~aa~~l~~~l~~~il~~r~----------------~~~~~a~e~ 516 (635)
T 4eho_A 453 PFTMGDTPADLSPRRSFAKWHQVVEGTSDPWTAADLAAAGTIGQTVADIVLQFRA----------------VRTLIAREQ 516 (635)
T ss_dssp CCCSCCSGGGCSHHHHHHHHHHTTTTCCSCCCTTHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHT
T ss_pred ccccCCCcceecceeeeecccceeeecccccchhhhHHHHhhhhhHHHHHHHHhH----------------HHHHHHHHH
Confidence 9764 56789999999999999999999999999999999998776655443321 111122333
Q ss_pred HHHHHHHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHHHccc
Q 005722 610 TNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLAI 679 (681)
Q Consensus 610 ~~el~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~al~G~ 679 (681)
.+++.+++++++++|+++|.+|+|++||+++++|+||+++|++|++...++++++.+.+..+++.+.+|+
T Consensus 517 ~~~~~~lle~a~~~i~~~D~~grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~~~~i~~~l~~g~ 586 (635)
T 4eho_A 517 VPQASSQVHASMQPVLITDAEGRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDFLRNVAELIDHGR 586 (635)
T ss_dssp SSSHHHHHHHCSSCCEEEETTCCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCCcEEEECCCCeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHHHHHHHHHHHcCC
Confidence 4467788999999999999999999999999999999999999999999999999999999888887653
No 2
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=100.00 E-value=3.6e-121 Score=1024.74 Aligned_cols=492 Identities=32% Similarity=0.591 Sum_probs=438.7
Q ss_pred CCccchhhh-hhcccCCCCCCCCceEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCchHHHH
Q 005722 59 VPSSTVSAY-LQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAA 137 (681)
Q Consensus 59 ~~~~~~t~~-~~~I~~pG~IQp~G~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~~~~~ 137 (681)
.++-+++.| .||||+||+|||||||||+|+++++|+++|+|++++||++|++ ++|+++.++|++...+.
T Consensus 7 ~~~~dl~~CdrEPIh~pG~IQphG~LLal~~~~~~I~~~S~N~~~~lg~~~~~----------llG~~l~~ll~~~~~~~ 76 (520)
T 3zq5_A 7 LSDQSLRQLETLAIHTAHLIQPHGLVVVLQEPDLTISQISANCTGILGRSPED----------LLGRTLGEVFDSFQIDP 76 (520)
T ss_dssp CCHHHHHHHHTCCGGGCCEECTTSEEEEEETTTTEEEEEETTHHHHHSCCHHH----------HTTSBHHHHCEESSCCC
T ss_pred CCCCCccccccccccCCCccCCCeEEEEEECCCCEEEEEcccHHHHhCcChHH----------HcCCCHHHHcCHHHHHH
Confidence 345689999 9999999999999999999999999999999999999998754 58999999999887777
Q ss_pred HHHHhccCCCccCCceeeecc--CCCc-eEEEEEEee-CCeEEEEeccCCCCCCccchhhhhHHHHHHHHHHHHHhcCCC
Q 005722 138 LQKAANFGEVNLLNPILIHCK--TSGK-PFYAILHRI-DVGLVIDLEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPS 213 (681)
Q Consensus 138 l~~~l~~~~~~~~~p~~~~~~--~~~~-~f~~~~Hr~-~~~lviElEp~~~~~~~~~~~g~~~~~~l~~~~i~rl~~~~~ 213 (681)
++.++...+....+|+.++++ .+++ .|++++||+ ++++||||||..+.+.. +..+.++++.+++.||++ +
T Consensus 77 l~~~l~~~~~~~~~p~~~~~~~~~~~~~~f~~~~Hr~~~~~lilElEp~~~~~~~----~~~~~~~ll~~i~~~Ir~--s 150 (520)
T 3zq5_A 77 IQSRLTAGQISSLNPSKLWARVMGDDFVIFDGVFHRNSDGLLVCELEPAYTSDNL----PFLGFYHMANAALNRLRQ--Q 150 (520)
T ss_dssp CSSCCCHHHHHHTSSEEEEEEETTTEEEEEEEEEEECTTSCEEEEEEECCTTCSC----CCTTHHHHHHHHHHHHHH--S
T ss_pred HHHHhcccccccCCcEEEEEeccCCCceeEEEEEEEEcCCEEEEEEEECCCcccc----chHHHHHHHHHHHHHHHh--c
Confidence 766554333345678887653 3456 799999999 99999999999654421 235678899999999999 7
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCCCCcCCCcCCCCCchHHHHHHHHcCCeEEeecCCCC
Q 005722 214 GNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAP 293 (681)
Q Consensus 214 ~~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LGlhfPasDIP~qaR~Ly~~n~vR~I~Dv~~~ 293 (681)
.+++++|+++|+|||++|||||||||||++||+|+||||++.++++||||+|||++|||+++|+||.+|++|+|+|++++
T Consensus 151 l~l~~il~~~v~evr~ll~~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~diP~~ar~ly~~~~vr~I~Di~~~ 230 (520)
T 3zq5_A 151 ANLRDFYDVIVEEVRRMTGFDRVMLYRFDENNHGDVIAEDKRDDMEPYLGLHYPESDIPQPARRLFIHNPIRVIPDVYGV 230 (520)
T ss_dssp CCHHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTEEECGGGSCHHHHHHHHHCCEEEESCTTCC
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCcEEEEEEEeCCCchhhcCCccChhhhhHHHHHHHHcCCEEEEcCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeecC--CCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCceeEEEEeecCCCCCC
Q 005722 294 PVKVIQD--KKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFV 371 (681)
Q Consensus 294 pv~lv~~--~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~kLWGLi~cHh~spr~v 371 (681)
||+|+|. +.++.|+||++|+||++||||+|||+||||+|||+|||+++ |+|||||+||||+||+|
T Consensus 231 pv~l~~~~~~~~~~pldL~~s~lr~~sp~h~eyL~nmgV~AsLvvpI~~~-------------~~LWGLl~~Hh~~pR~w 297 (520)
T 3zq5_A 231 AVPLTPAVNPSTNRAVDLTESILRSAYHCHLTFLKNMGVGASLTISLIKD-------------GHLWGLIACHHQTPKVI 297 (520)
T ss_dssp CEEEESSSCTTTSSCCCCTTCSSBCCCHHHHHHHHHTTCSEEEEEEEEET-------------TEEEEEEEEEESSCCCC
T ss_pred ceeeecccccccCCcccccccccccCCHHHHHHHHhcCCcEEEEEeEEEC-------------CEEEEEEEEecCCCcCC
Confidence 9999984 56789999999999999999999999999999999999998 89999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccCC-ccccccCChhhhhhccCCeEEEEECCeEE
Q 005722 372 PFPLRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQ-TVLCDMLLRDS-PVGIVTQTPNVMDLVKCDGAALYYRGKLW 449 (681)
Q Consensus 372 ~~~~R~a~e~l~q~~s~ql~~~~el~~q~~e~~~~~~~-~~l~~~l~~~~-~~~i~~~~~~ll~L~~adGaal~~~~~~~ 449 (681)
+++.|.+|++|++++|.+|+.+..++....++++.+++ ++++.|..+++ +.++.++.++|++|++|||+|||++++++
T Consensus 298 ~~~er~~~e~la~~lsiai~q~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ll~l~~adG~al~~~~~~~ 377 (520)
T 3zq5_A 298 PFELRKACEFFGRVVFSNISAQEDTETFDYRVQLAEHEAVLLDKMTTAADFVEGLTNHPDRLLGLTGSQGAAICFGEKLI 377 (520)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHTCHHHHHHTTTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcChhHHHHhccHHHHhhhcCCeEEEEECCEEE
Confidence 99999999999999999998765544444444444433 45567766655 56788899999999999999999999999
Q ss_pred EeccCCCHHHHHHHHHHHHHhcCCCeeeeeccccccCCCCccccccccccEEEEEeCCCcEEEEeecCcceEEeecCCCC
Q 005722 450 LLGVTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAGYPGALALGDAVCGIAAVKITSKDFLFWFRSHTAKEIKWGGAKH 529 (681)
Q Consensus 450 ~~G~tP~~~~i~~l~~wl~~~~~~~~~~~td~L~~~~~p~a~~~~~~~~G~lav~i~~~~~l~wFR~e~~~~v~WaG~p~ 529 (681)
++|.||++++|++|++||..++.+ ++|+||+|.+ .||++..+++.+||||+++|+.++||+|||+|+.++|+|||+|+
T Consensus 378 ~~G~~P~~~~i~~l~~wl~~~~~~-~v~~Td~L~~-~~p~a~~~~~~a~G~lai~ls~~~~l~wFR~e~~~~v~WaG~P~ 455 (520)
T 3zq5_A 378 LVGETPDEKAVQYLLQWLENREVQ-DVFFTSSLSQ-IYPDAVNFKSVASGLLAIPIARHNFLLWFRPEVLQTVNWGGDPN 455 (520)
T ss_dssp EEESCCCHHHHHHHHHHHHHSCCC-SCEEESCGGG-TSGGGGGGHHHHSEEEEEEETTTEEEEEEECCCCEEEEESSCGG
T ss_pred EcCCCCCHHHHHHHHHHHHhcCCC-CeeEecchhh-hCcchhhcccccceEEEEEeCCCCEEEEECCCcceEEEeCCCCC
Confidence 999999999999999999998765 6899999998 69999999999999999999999999999999999999999999
Q ss_pred CCCC--CCCCC-CccCCchhhhHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHH
Q 005722 530 DSGG--KDGGR-KMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGSLQD 581 (681)
Q Consensus 530 k~~~--~~~g~-~l~PR~SFe~w~E~v~~~s~pW~~~Ei~aa~~L~l~l~~~l~~ 581 (681)
|++. .++|. +|+||+||++|+|+|+|+|.||++.|+++|.+||..|.+.+..
T Consensus 456 k~~~~~~~~g~~~l~PR~SF~~W~E~v~g~s~pW~~~e~~~A~~Lr~~l~~vvl~ 510 (520)
T 3zq5_A 456 HAYEATQEDGKIELHPRQSFDLWKEIVRLQSLPWQSVEIQSALALKKAIVNLILR 510 (520)
T ss_dssp GCSEEEEETTEEEEECCCCCCCEEEEECSCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCcCCCCCCccccchhhhhhheeeecCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9876 33665 8999999999999999999999999999999987766665544
No 3
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=100.00 E-value=8.6e-119 Score=1003.29 Aligned_cols=477 Identities=27% Similarity=0.457 Sum_probs=426.1
Q ss_pred CCccchhhh-hhcccCCCCCCCCceEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhh-hcCchHHH
Q 005722 59 VPSSTVSAY-LQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRT-LFTSSGAA 136 (681)
Q Consensus 59 ~~~~~~t~~-~~~I~~pG~IQp~G~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~-~~~~~~~~ 136 (681)
.++-+++.| .||||+||+|||||||||+|+ +++|+++|+|++++||++| ++|+++.+ +|++...+
T Consensus 4 ~~~~dl~~C~~EPIh~pG~IQphG~Ll~l~~-~~~I~~~S~N~~~~lg~~~------------~lG~~l~~~ll~~~~~~ 70 (505)
T 3nhq_A 4 ITPVTLANCEDEPIHVPGAIQPHGALVTLRA-DGMVLAASENIQALLGFVA------------SPGSYLTQEQVGPEVLR 70 (505)
T ss_dssp -CCCCTTTGGGCCTTSCSEECTTEEEEEECT-TSBEEEEETTHHHHHSSCC------------CTTCBCCHHHHHHHHHH
T ss_pred CCcCCccccccccccCCCccCCCeEEEEEcC-CCeEEEEcccHHHHhCccc------------ccCCchhhhhCCHHHHH
Confidence 445688999 999999999999999999999 8999999999999999976 37999999 99999999
Q ss_pred HHHHHhccCCCccCCceeeeccCCCceEEEEEEeeCCeEEEEeccCCCCCCccchhhhhHHHHHHHHHHHHHhcCCCCCH
Q 005722 137 ALQKAANFGEVNLLNPILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNI 216 (681)
Q Consensus 137 ~l~~~l~~~~~~~~~p~~~~~~~~~~~f~~~~Hr~~~~lviElEp~~~~~~~~~~~g~~~~~~l~~~~i~rl~~~~~~~l 216 (681)
.+++++..... ..+|+.++ .++++|++++||+++++||||||..+.+. +..+.++++.+++.||++ +.++
T Consensus 71 ~l~~~l~~~~~-~~~p~~~~--~~~~~f~~~~Hr~~~~lilElEp~~~~~~-----~~~~~~~ll~~i~~~Ir~--sl~l 140 (505)
T 3nhq_A 71 MLEEGLTGNGP-WSNSVETR--IGEHLFDVIGHSYKEVFYLEFEIRTADTL-----SITSFTLNAQRIIAQVQL--HNDT 140 (505)
T ss_dssp HHHHHHSCSSC-CCCEEEEC--SSSSCEEEEEEEETTEEEEEEEECCSCCC-----CSHHHHHHHHHHHHHHHH--CCCH
T ss_pred HHHHHhhcccc-cCCcEEEe--cCCceEEEEEEEECCEEEEEEEEcCCccc-----chHHHHHHHHHHHHHHHh--cCCH
Confidence 99998876544 56788875 56789999999999999999999865432 235678899999999999 6799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCCCCcCCCcCCCCCchHHHHHHHHcCCeEEeecCCCCCce
Q 005722 217 SLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVK 296 (681)
Q Consensus 217 ~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LGlhfPasDIP~qaR~Ly~~n~vR~I~Dv~~~pv~ 296 (681)
+++|+++|++||++|||||||||||++||+|+||||++.++++||||+|||++|||+++|++|.+|+||+|+|++++|||
T Consensus 141 ~~il~~~v~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~LGl~~p~~diP~~ar~ly~~~~vr~I~Dv~~~~~~ 220 (505)
T 3nhq_A 141 ASLLSNVTDELRRMTGYDRVMAYRFRHDDSGEVVAESRREDLESYLGQRYPASDIPAQARRLYIQNPIRLIADVAYTPMR 220 (505)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHHHHHCSEEEESCTTCCCEE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEecCCCCEEEEEEEeCCCchhhcCCccCcccCHHHHHHHHHcCCEEEEcCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecC--CCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCceeEEEEeecCCCCCCChh
Q 005722 297 VIQD--KKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVPFP 374 (681)
Q Consensus 297 lv~~--~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~kLWGLi~cHh~spr~v~~~ 374 (681)
+++. +.++.|+||++|+|||+||||+|||+||||+|||+|||+++ |+|||||+||||+||+|+++
T Consensus 221 l~~~~~~~~~~pldLs~~~lR~~sp~h~eyL~nmgV~AsLvvpI~~~-------------~~LWGLl~~Hh~~pR~w~~~ 287 (505)
T 3nhq_A 221 VFPALNPETNESFDLSYSVLRSVSPIHCEYLTNMGVRASMSISIVVG-------------GKLWGLFSCHHMSPKLIPYP 287 (505)
T ss_dssp EESSEETTTTEECCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEEECS-------------SSEEEEEEEEESSCCCCCHH
T ss_pred cccccccccCCcccccccccccCCHHHHHHHHhcCCceEEEEEEEEC-------------CEEEEEEEEecCCCCCCCHH
Confidence 9985 55679999999999999999999999999999999999998 89999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-C-ccccccCChhhhhhccCCeEEEEECCeEEEec
Q 005722 375 LRYACEFLIQVFGVQVNKEVELSAQLREKHILRTQTVLCDMLLRD-S-PVGIVTQTPNVMDLVKCDGAALYYRGKLWLLG 452 (681)
Q Consensus 375 ~R~a~e~l~q~~s~ql~~~~el~~q~~e~~~~~~~~~l~~~l~~~-~-~~~i~~~~~~ll~L~~adGaal~~~~~~~~~G 452 (681)
.|.+|++|++++|.+|+....++.+..++++.++++.++.++.++ + +.++.+..+++++|++|||+|||++++++++|
T Consensus 288 er~~~e~la~~ls~al~q~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~ll~adg~al~~~~~~~~~G 367 (505)
T 3nhq_A 288 VRMSFQIFSQVCSAIVERLEQGRIAELLRVSTERRLALARRARDADDLFGALAHPDDGIAALIPCDGALVMLGGRTLSIR 367 (505)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCTTTSHHHHTTCSEEEEEETTEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHhhHHHHHHhCCCeEEEEECCeEEecC
Confidence 999999999999999987766665556666777777777766543 3 45678889999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCeeeeeccccccCCCCccc---cccccccEEEEEeCC--CcEEEEeecCcceEEeecCC
Q 005722 453 VTPTEEQIKDIAEWLLEYHRGSTGLSTDSLVEAGYPGALA---LGDAVCGIAAVKITS--KDFLFWFRSHTAKEIKWGGA 527 (681)
Q Consensus 453 ~tP~~~~i~~l~~wl~~~~~~~~~~~td~L~~~~~p~a~~---~~~~~~G~lav~i~~--~~~l~wFR~e~~~~v~WaG~ 527 (681)
.||++++|++|++||..++.+ +|+|| .||++.. +++.+||||+++|+. ++||+|||+|+.++|+||||
T Consensus 368 ~~P~~~~i~~l~~wl~~~~~~--v~~Td-----~~p~a~~~~~~~~~~~G~lai~ls~~~~~~l~wFR~e~~~~v~WaG~ 440 (505)
T 3nhq_A 368 GDFERQAGNVLQRLQRDPERD--IYHTD-----NWPQPSEDSPDGGDCCGVLAIRFHRQESGWIFWFRHEEVHRIRWGGK 440 (505)
T ss_dssp SCCHHHHHHHHHHHHTCTTCS--EEEES-----CC-----------CCCEEEEEEEETTTTEEEEEEECSCCCSEEEEES
T ss_pred CCCCHHHHHHHHHHHHhcCCC--eEEeC-----CCcchhhccccccccceEEEEEecCCCCcEEEEEcCCcceEEEeCCC
Confidence 999999999999999988765 89999 4999988 889999999999986 79999999999999999999
Q ss_pred CCCCCC-CCCCCCccCCchhhhHHhhhccccCCCCHHHHHHHHHHHHHHHHH
Q 005722 528 KHDSGG-KDGGRKMHPRSSFKAFLEVVKQRSLPWEDVEMDAIHSLQLILRGS 578 (681)
Q Consensus 528 p~k~~~-~~~g~~l~PR~SFe~w~E~v~~~s~pW~~~Ei~aa~~L~l~l~~~ 578 (681)
|+|++. .++|.+|+||+||++|+|+|+|+|.||++.|+++|++||..|.+.
T Consensus 441 P~k~~~~~~~~~~l~PR~SF~~W~E~v~g~s~pW~~~e~~~A~~Lr~~l~~v 492 (505)
T 3nhq_A 441 PEKLLTIGPSGPRLTPRGSFEAWEEVVRGHSTPWSETDLAIAEKLRLDLMEL 492 (505)
T ss_dssp CCCCCCCCTTCGGGSHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCCCCCCCccCchhhhhhheeeecCccCCCCHHHHHHHHHHHHHHHHH
Confidence 999976 467889999999999999999999999999999999986655543
No 4
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=100.00 E-value=2.7e-83 Score=680.16 Aligned_cols=302 Identities=33% Similarity=0.543 Sum_probs=275.6
Q ss_pred ccchhhh-hhcccCCCCCCCCceEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCchHHHHHH
Q 005722 61 SSTVSAY-LQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAALQ 139 (681)
Q Consensus 61 ~~~~t~~-~~~I~~pG~IQp~G~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~~~~~l~ 139 (681)
+-+++.| .||||+||+|||||||||+| ++++|+++|+|++++||++|++ ++|+++.++|++...+.++
T Consensus 9 ~~~l~~C~rEpIh~~G~IQphG~Ll~~~-~~~~I~~~S~N~~~~lg~~~~~----------~lG~~l~~ll~~~~~~~l~ 77 (327)
T 4e04_A 9 QPDLSTCDDEPIHIPGAIQPHGLLLALA-ADMTIVAGSDNLPELTGLAIGA----------LIGRSAADVFDSETHNRLT 77 (327)
T ss_dssp ----CCGGGCCTTCCSEECTTSEEEEEC-TTCBEEEEETTHHHHHSCCHHH----------HTTCBHHHHBCHHHHHHHH
T ss_pred CCCccccccccccCCCccCCCeEEEEEc-CCCeEEEEcccHHHHhCCChHh----------hcCCCHHHHcCHHHHHHHH
Confidence 4478999 99999999999999999999 8999999999999999998754 5899999999999999999
Q ss_pred HHhccCCCccCCceeeecc--CCCceEEEEEEeeCCeEEEEeccCCCCCCccchhhhhHHHHHHHHHHHHHhcCCCCCHH
Q 005722 140 KAANFGEVNLLNPILIHCK--TSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNIS 217 (681)
Q Consensus 140 ~~l~~~~~~~~~p~~~~~~--~~~~~f~~~~Hr~~~~lviElEp~~~~~~~~~~~g~~~~~~l~~~~i~rl~~~~~~~l~ 217 (681)
+++...+....+|+.+++. .++++|++++||+++++|+||||...... ...+.++++.+++.||++ +.+++
T Consensus 78 ~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~Hr~~~~lilElEp~~~~~~-----~~~~~~~ll~~i~~rIr~--sldl~ 150 (327)
T 4e04_A 78 IALAEPGAAVGAPIAVGFTMPDGERAFNGSWHRHDQLVFLELEPPQRDVR-----YPQAFFRSVRSAIRRLQA--AETLE 150 (327)
T ss_dssp HHHHSCSCCSEEEEEEEBCCTTCCCEEEEEEEEETTEEEEEEECCCCCSS-----CCCCHHHHHHHHHHHHHH--CCSHH
T ss_pred HHhhccccccCCcEEEEeeccCCCceEEEEEEEECCEEEEEEEECCCccc-----chHHHHHHHHHHHHHHHh--cCCHH
Confidence 9887666656788888642 46789999999999999999999833221 123568899999999999 67999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCCCCcCCCcCCCCCchHHHHHHHHcCCeEEeecCCCCCcee
Q 005722 218 LLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKV 297 (681)
Q Consensus 218 ~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LGlhfPasDIP~qaR~Ly~~n~vR~I~Dv~~~pv~l 297 (681)
+||+++|+|||++|||||||||||++||+|+||||++.++++||||+|||++|||+++|++|.+|++|+|+|++++||+|
T Consensus 151 ~il~~av~evr~llg~DRVmIYrF~~d~~G~VvAEs~~~~~~s~LGl~~p~~dip~~ar~ly~~~~vr~I~Di~~~~v~l 230 (327)
T 4e04_A 151 SACAAAAQEVREITGFDRVMIYRFASDFSGEVIAEDRCAEVESYLGLHFPASDIPAQARRLYTINPVRIIPDINYRPVPV 230 (327)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTSCCCTTCEECGGGSCHHHHHHHHHSCEEEESCTTCCCEEE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEcCCCCEEEEEEEecCCCcCccCCccccccchHHHHHHHHcCCEEEEeCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC--CCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCceeEEEEeecCCCCCCChhH
Q 005722 298 IQD--KKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVPFPL 375 (681)
Q Consensus 298 v~~--~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~kLWGLi~cHh~spr~v~~~~ 375 (681)
++. +.++.|+||++|+||++||||+|||+||||+|||+|||+++ |||||||+||||+||+|++++
T Consensus 231 ~~~~~~~~~~~ldls~s~lr~~spcH~eyL~nmgV~AsLvvpI~~~-------------~~LWGLl~~Hh~~pR~w~~~e 297 (327)
T 4e04_A 231 TPDLNPRTGRPIDLSFAILRSVSPVHLEYMRNIGMHGTMSISILRG-------------ERLWGLIACHHRKPNYVDLEV 297 (327)
T ss_dssp ESCCCTTTSSCCCCTTCTTBCCCHHHHHHHHHTTCCEEEEEEEEET-------------TEEEEEEEEEESSCCCCCHHH
T ss_pred ccccccccCCcccccccccccCCHHHHHHHHHhCCcEEEEEEEEEC-------------CEEEEEEEEecCCCcCCCHHH
Confidence 984 56789999999999999999999999999999999999998 899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005722 376 RYACEFLIQVFGVQVNKE 393 (681)
Q Consensus 376 R~a~e~l~q~~s~ql~~~ 393 (681)
|.+|++|++++|.+|+..
T Consensus 298 r~~~e~la~~lsiaI~~~ 315 (327)
T 4e04_A 298 RQACELVAQVLAWQIGVM 315 (327)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998754
No 5
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=100.00 E-value=2.4e-83 Score=682.62 Aligned_cols=300 Identities=32% Similarity=0.497 Sum_probs=276.6
Q ss_pred Cccchhhh-hhcccCCCCCCCCceEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCchHHHHH
Q 005722 60 PSSTVSAY-LQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAAL 138 (681)
Q Consensus 60 ~~~~~t~~-~~~I~~pG~IQp~G~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~~~~~l 138 (681)
++-+++.| .||||+||+|||||||||+|+++++|+++|+|++++||++|++ ++|+++.++|++ .++.+
T Consensus 31 ~~~dl~~Cd~EPIh~pG~IQphG~LL~l~~~~~~I~~~S~N~~~~lg~~~~~----------llG~~l~~ll~~-~~~~l 99 (343)
T 3s7o_A 31 PEITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTV----------LRGQTLAALLPE-QWPAL 99 (343)
T ss_dssp CCCCTTTGGGCCTTCCSEECTTSEEEEEETTTCBEEEEETTHHHHHSSCHHH----------HTTCBHHHHSTT-THHHH
T ss_pred CCcCccccccccccCCCccCCCeEEEEEECCCCEEEEEcccHHHHhCcChHH----------HcCCCHHHHHhH-HHHHH
Confidence 34578999 9999999999999999999999999999999999999998754 689999999999 99999
Q ss_pred HHHhccCCCccCC---ceeeeccCCCceEEEEEEeeCCeEEEEeccCCCCCCccchhhhhHHHHHHHHHHHHHhcCCCCC
Q 005722 139 QKAANFGEVNLLN---PILIHCKTSGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGN 215 (681)
Q Consensus 139 ~~~l~~~~~~~~~---p~~~~~~~~~~~f~~~~Hr~~~~lviElEp~~~~~~~~~~~g~~~~~~l~~~~i~rl~~~~~~~ 215 (681)
++++...+....+ |+.+. ++++|++++||+++++||||||..+.+ .+.++++.+++.||++ +.+
T Consensus 100 ~~~l~~~~~~~~~~~~p~~~~---~~~~f~~~~Hr~~~~lilElEp~~~~~--------~~~~~ll~~i~~rIr~--sld 166 (343)
T 3s7o_A 100 QAALPPGCPDALQYRATLDWP---AAGHLSLTVHRVGELLILEFEPTEAWD--------STGPHALRNAMFALES--APN 166 (343)
T ss_dssp HHHSCTTCCTTCCEEEEECCS---SSSEEEEEEEEETTEEEEEEEEEC------------CHHHHHHHHHHHHHH--CCS
T ss_pred HHHhccccccccccCCcEEEc---CCCEEEEEEEEECCEEEEEEEECCCCh--------HHHHHHHHHHHHHHHh--cCC
Confidence 9988766655666 77663 577999999999999999999986432 2568899999999999 779
Q ss_pred HHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCCCCcCCCcCCCCCchHHHHHHHHcCCeEEeecCCCCCc
Q 005722 216 ISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPV 295 (681)
Q Consensus 216 l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LGlhfPasDIP~qaR~Ly~~n~vR~I~Dv~~~pv 295 (681)
+++||+++|+|||++|||||||||||++||+|+||||+++++|+||||+|||++|||+++|++|.+|+||+|+|+++.||
T Consensus 167 l~~ilq~tV~eVR~llg~DRVmIYrF~~d~~GeVvAEs~~~~~~s~LGl~~pasdiP~~ar~ly~~~~vr~I~Di~~~pv 246 (343)
T 3s7o_A 167 LRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASHIPAQARALYTRHLLRLTADTRAAAV 246 (343)
T ss_dssp HHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHHHHHHSCEEEESCTTCCCE
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEEEcCCCCEEEEEEEecCCcccccCCccccccCHHHHHHHHHcCCEEEEeccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecC--CCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCceeEEEEeecCCCCCCCh
Q 005722 296 KVIQD--KKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVPF 373 (681)
Q Consensus 296 ~lv~~--~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~kLWGLi~cHh~spr~v~~ 373 (681)
+|++. +.++.|+||++|+||++||||+|||+||||+|||+|||+++ +||||||+|||++||+|++
T Consensus 247 ~l~~~~~~~~~~~ldLs~s~lR~~spcH~eyL~nmgV~AsLvvpI~~~-------------~~LWGLL~~Hh~~pR~w~~ 313 (343)
T 3s7o_A 247 PLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVG-------------GQLWGLIACHHQTPYVLPP 313 (343)
T ss_dssp EEESSEETTTTEECCCTTCTTBCCCHHHHHHHHHTTCSEEEEEEEEET-------------TEEEEEEEEEESSCCCCCH
T ss_pred ccccccccccCCcccccccccccCCHHHHHHHHHcCCcEEEEEEEEEC-------------CEEEEEEEEEcCCCcCCCH
Confidence 99984 56789999999999999999999999999999999999998 8999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 005722 374 PLRYACEFLIQVFGVQVNKEVEL 396 (681)
Q Consensus 374 ~~R~a~e~l~q~~s~ql~~~~el 396 (681)
++|.+|++|++++|.+|+.+.++
T Consensus 314 ~er~~~e~la~~lsiaI~~~~~~ 336 (343)
T 3s7o_A 314 DLRTTLESLGRLLSLQVQVKEAL 336 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999876554
No 6
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=100.00 E-value=3.9e-80 Score=661.16 Aligned_cols=301 Identities=33% Similarity=0.572 Sum_probs=275.6
Q ss_pred cchhhh-hhcccCCCCCCCCceEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCchHHHHHHH
Q 005722 62 STVSAY-LQRVQRGRLIQPFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAALQK 140 (681)
Q Consensus 62 ~~~t~~-~~~I~~pG~IQp~G~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~~~~~l~~ 140 (681)
-+++.| .||||+||+|||||||||+|+++++|+++|+|++++||++|++ ++|+++.++|++...+.+++
T Consensus 23 ~~l~~C~~EpIh~~g~IQp~G~Ll~~~~~~~~i~~~S~N~~~~lg~~~~~----------llG~~l~~ll~~~~~~~l~~ 92 (337)
T 2ool_A 23 LDLTECDREPIHIPGAIQPHGYLFVVSETDLRIASVSANVEDLLRQPPAS----------LLNVPIAHYLTAASAARLTH 92 (337)
T ss_dssp ---CCGGGSCTTCCSEECTTSEEEEECTTTCBEEEEETTHHHHHSSCGGG----------GTTCBGGGGBCHHHHHHHHH
T ss_pred cChhhhccCcCcCCCccCCCEEEEEEECCCCEEEEEehhHHHHHCcCHHH----------HcCCCHHHHcCHHHHHHHHH
Confidence 368899 9999999999999999999999999999999999999998875 58999999999999999999
Q ss_pred HhccCCCccCCceeeeccC--CCceEEEEEEeeCCeEEEEeccCCCCCCccchhhhhHHHHHHHHHHHHHhcCCCCCHHH
Q 005722 141 AANFGEVNLLNPILIHCKT--SGKPFYAILHRIDVGLVIDLEPVNPDDVPVTAAGALKSYKLAAKAISRLQSLPSGNISL 218 (681)
Q Consensus 141 ~l~~~~~~~~~p~~~~~~~--~~~~f~~~~Hr~~~~lviElEp~~~~~~~~~~~g~~~~~~l~~~~i~rl~~~~~~~l~~ 218 (681)
++...+....+|+.+++.. .+++|++++||+++++|+||||..+.+. ..+.++++.+++.||++ +.++++
T Consensus 93 ~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~Hr~~~~li~ElE~~~~~~~------~~~~~~ll~~i~~~Ir~--sl~l~~ 164 (337)
T 2ool_A 93 ALHGGDPAAINPIRLDVVTPDGERAFNGILHRHDSIVILELEPRDESRY------TNEFFRSVRVAIRRLQT--AADLPT 164 (337)
T ss_dssp HHCC----CCCSEEEEEEETTEEEEEEEEEEEETTEEEEEEECCCCCSC------HHHHHHHHHHHHHHHHT--CCSHHH
T ss_pred HHhcCCccccCcEEEEEeccCCCeEEEEEEEEcCCeEEEEEEecccchh------hHHHHHHHHHHHHHHHh--cCCHHH
Confidence 9877666677888877654 3678999999999999999999965432 34678899999999999 789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCCCCcCCCcCCCCCchHHHHHHHHcCCeEEeecCCCCCceee
Q 005722 219 LCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVI 298 (681)
Q Consensus 219 l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LGlhfPasDIP~qaR~Ly~~n~vR~I~Dv~~~pv~lv 298 (681)
+|+++|+|||++|||||||||||++||+|+||||++.++++||||+|||++|||+++|+||.+|+||+|+|+++.||||+
T Consensus 165 il~~tv~evr~ll~~DRV~IYrF~~d~~G~VvaEs~~~~~~s~lGl~~p~~dip~~ar~ly~~~~vr~I~Di~~~~v~~~ 244 (337)
T 2ool_A 165 ACWIAASEVRRITGFDRIKVYQFAADWSGQVIAEDRDSGIPSLLDFHFPSSDIPAQSRALYTINPVRIIPDIGYRPSPLV 244 (337)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEEEECTTCCCCTTCEECGGGSCHHHHHHHHHSCEEEESCTTCCCEEEE
T ss_pred HHHHHHHHHHHHhCCCeeEEEEEcCCCCEEEEEEEccCCCccccCCCCCccccHHHHHHHHHhCCEEEEEccCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC--CCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCceeEEEEeecCCCCCCChhHH
Q 005722 299 QD--KKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVPFPLR 376 (681)
Q Consensus 299 ~~--~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~kLWGLi~cHh~spr~v~~~~R 376 (681)
+. +.++.||||++|+||++||||++||+||||+|||+|||+++ ++|||||+||||+||+|++++|
T Consensus 245 ~~~~~~~~~~ldl~~~~lr~~sp~h~eyL~nm~v~AsLvvpI~~~-------------~~LWGLl~~Hh~~pR~w~~~e~ 311 (337)
T 2ool_A 245 PDINPRLGGPIDLSFSVLRSVSPTHLEYMVNMGMHAAMSISIVRD-------------NRLWGMISCHNLTPRFVSYEVR 311 (337)
T ss_dssp SCCCTTTCSSCCCTTCTTBCCCHHHHHHHHHHTCCEEEEEEEEET-------------TEEEEEEEEEESSCCCCCHHHH
T ss_pred cccccccCCCcccccccccCCCHHHHHHHHHcCccccEEEEEEEC-------------CeeEEEEEEecCCCCCCCHHHH
Confidence 85 56789999999999999999999999999999999999998 8999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 005722 377 YACEFLIQVFGVQVNKE 393 (681)
Q Consensus 377 ~a~e~l~q~~s~ql~~~ 393 (681)
.+|++|++++|.+|+..
T Consensus 312 ~~~e~la~~l~iai~q~ 328 (337)
T 2ool_A 312 QACELIAQVLTWQIGVL 328 (337)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988653
No 7
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A*
Probab=100.00 E-value=3.7e-34 Score=277.95 Aligned_cols=149 Identities=19% Similarity=0.237 Sum_probs=130.6
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCCCCcCCCcCCCCCchHHHHHHHHcCCe
Q 005722 205 ISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKV 284 (681)
Q Consensus 205 i~rl~~~~~~~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LGlhfPasDIP~qaR~Ly~~n~v 284 (681)
..+|++ +.|++++++++|++||+++|+||||||+|++||+|+||||++.++++|++|++||++|||++++++|.++++
T Consensus 3 a~~Ir~--sldl~~il~~~v~~v~~~l~~DRv~Iy~f~~d~~g~vvaE~~~~~~~s~lg~~~~~~~~~~~~~~~~~~g~~ 80 (171)
T 4glq_A 3 AVQLSE--LRDRQAIFETLVAKGRELLACDRVIVYAFDDNYVGTVVAESVAEGWPQARDQVIEDPCFREHWVEAYRQGRI 80 (171)
T ss_dssp -----C--TTHHHHHHHHHHHHHHHHHTCSEEEEEEECTTCCEEEEEEEECTTSCCCTTCEECCTHHHHHTHHHHHTTCC
T ss_pred HHHHhh--cCCHHHHHHHHHHHHHHHHCCCeEEEEEEeCCCCeEEEEEEcCCCCccccCCccCccccHHHHHHHHHcCCE
Confidence 357887 779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCceeecCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCceeEEEEee
Q 005722 285 RMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCH 364 (681)
Q Consensus 285 R~I~Dv~~~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~kLWGLi~cH 364 (681)
++|+|++.. +++|||.+||++|||+|+|++||+++ |+|||+|+||
T Consensus 81 ~~I~Dv~~~----------------------~~~~~~~~~l~~~~v~S~L~vPi~~~-------------~~l~GlL~~~ 125 (171)
T 4glq_A 81 QATTDIFKA----------------------GLTECHLNQLRPLKVRANLVVPMVID-------------DQLFGLLIAH 125 (171)
T ss_dssp EEESCGGGT----------------------TCCHHHHHHHGGGTEEEEEEEEEEET-------------TEEEEEEEEE
T ss_pred EEEcCcCcC----------------------CCCHHHHHHHHhcCCcEEEEEEEEEC-------------CEEEEEEEEE
Confidence 999999842 36899999999999999999999988 8999999999
Q ss_pred cC-CCCCCChhHHHHHHHHHHHHHHHH
Q 005722 365 HT-SPRFVPFPLRYACEFLIQVFGVQV 390 (681)
Q Consensus 365 h~-spr~v~~~~R~a~e~l~q~~s~ql 390 (681)
|| +||.|+.+....++.++..++..|
T Consensus 126 ~~~~~r~w~~~ei~ll~~lA~ql~iAi 152 (171)
T 4glq_A 126 QASEPRQWQEIEIDQFSELASTGSLVL 152 (171)
T ss_dssp EESSCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 98 599999876655554544444433
No 8
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Probab=99.96 E-value=3.1e-29 Score=239.81 Aligned_cols=163 Identities=33% Similarity=0.549 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCC-CCCCcCCCcCCCCCchHHHHHHHHcCCeEEeecCCCCC
Q 005722 216 ISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRP-DLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPP 294 (681)
Q Consensus 216 l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~-~l~s~LGlhfPasDIP~qaR~Ly~~n~vR~I~Dv~~~p 294 (681)
++++++++++++++++|+|||+||+|++|++|++++|+..+ ++++++|.+||++|||.+++.+|.++++|+|.|++..+
T Consensus 1 l~~il~~~~~~~~~~l~~dr~~i~~~~~~~~~~~~~e~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~i~d~~~~~ 80 (172)
T 2k2n_A 1 LDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEEARRLFRLAQVRVIVDVEAQS 80 (172)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEEECCTTSCCEEEEEEESSTTSCCCTTCBCCTTCSCSHHHHHHHHTCCEECCCGGGCC
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEEECCCCCEEEEEEEecCCCCccccCCccCcccCcHHHHHHHHhCCeEEEeeccccc
Confidence 47899999999999999999999999999999999999987 57999999999999999999999999999999999998
Q ss_pred ceeec--CCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCceeEEEEeecCCCCCCC
Q 005722 295 VKVIQ--DKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVP 372 (681)
Q Consensus 295 v~lv~--~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~kLWGLi~cHh~spr~v~ 372 (681)
+.+++ ...+++|+.++++..++.+|||.+|++++|++|.|++||+.+ |+|||+|.|||+.||.|+
T Consensus 81 ~g~v~~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~~s~l~vPi~~~-------------~~l~G~l~~~~~~~~~~~ 147 (172)
T 2k2n_A 81 RSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHH-------------QELWGLLVSHHAEPRPYS 147 (172)
T ss_dssp CCCSCCCSCCCSSCCCCCSSSSCCCCHHHHHHHHTTTCSEEEECCCSCS-------------SCCCEEEEEEECSCCCCC
T ss_pred cccccccccccCCceeccchhhcCCCHHHHHHHHhcCCeEEEEEEEEEC-------------CEEEEEEEEEeCCCCCCC
Confidence 88875 356789999999999999999999999999999999999977 899999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 005722 373 FPLRYACEFLIQVFGVQVN 391 (681)
Q Consensus 373 ~~~R~a~e~l~q~~s~ql~ 391 (681)
.+....++.++..++..|.
T Consensus 148 ~~e~~~l~~la~~~a~ai~ 166 (172)
T 2k2n_A 148 QEELQVVQLLADQVSIAIA 166 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9888777777766665553
No 9
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A*
Probab=99.95 E-value=8.3e-28 Score=236.15 Aligned_cols=180 Identities=31% Similarity=0.505 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCC-CCCCcCCCcCCCCCchHHH
Q 005722 197 SYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRP-DLEPYLGFHYPATDIPQAS 275 (681)
Q Consensus 197 ~~~l~~~~i~rl~~~~~~~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~-~l~s~LGlhfPasDIP~qa 275 (681)
..+++.++..+|.+ +.+++++++++++++++++|+|||+||.|++|++|++++|+..+ ++++++|.+||.+|||.++
T Consensus 14 ~~~~L~~i~~~i~~--~~dl~~il~~~~~~l~~~l~~dr~~i~~~d~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~ 91 (208)
T 2lb5_A 14 RDALINRITHQIRQ--SLELDQILRATVEEVRAFLGTDRVKVYRFDPEGHGTVVAEARGGERLPSLLGLTFPAGDIPEEA 91 (208)
T ss_dssp -------------------CHHHHHHHHHHHHHHHCCSEEEEEECCTTSEEEEEEEEESSCCSCCCTTCEEEGGGCCSHH
T ss_pred HHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHCCCEEEEEEEcCCCCEEEEEEEecCCCCccccCCcCChhhCcHHH
Confidence 44556677788877 67999999999999999999999999999999999999999987 6899999999999999999
Q ss_pred HHHHHcCCeEEeecCCCCCceeecC--CCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccc
Q 005722 276 RFLIMKNKVRMICDCLAPPVKVIQD--KKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQ 353 (681)
Q Consensus 276 R~Ly~~n~vR~I~Dv~~~pv~lv~~--~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~ 353 (681)
+.+|.++++|+|.|+...++.+++. ..+++|++++.+..++.+|||.+|++++|++|.|++||+.+
T Consensus 92 ~~~~~~~~~~~i~d~~~~~~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~l~~~~~~S~l~vPi~~~------------ 159 (208)
T 2lb5_A 92 RRLFRLAQVRVIVDVEAQSRSISQPESWGLSARVPLGEPLQRPVDPCHVHYLKSMGVASSLVVPLMHH------------ 159 (208)
T ss_dssp HHHHHHTCCCEECCGGGCCCCCCCSSCCCCCSCCCCCSCSSCCCCHHHHHHHHHTTCSEEEEEEEEET------------
T ss_pred HHHHHhCCeEEEeccccccccccccccccccccccccchhhccCCHHHHHHHHhcCCcEEEEEEEEEC------------
Confidence 9999999999999999988887653 45688999999999999999999999999999999999987
Q ss_pred cCceeEEEEeecCCCCCCChhHHHHHHHHHHHHHHHHH
Q 005722 354 GRKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVN 391 (681)
Q Consensus 354 ~~kLWGLi~cHh~spr~v~~~~R~a~e~l~q~~s~ql~ 391 (681)
|++||+|.|||+.||.|+.+....++.++..++..|.
T Consensus 160 -~~l~GvL~~~~~~~~~~~~~e~~ll~~la~~~a~ai~ 196 (208)
T 2lb5_A 160 -QELWGLLVSHHAEPRPYSQEELQVVQLLADQVSIAIA 196 (208)
T ss_dssp -TEEEEEEEEEESCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -CEeEEEEEEeeCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999888888777777666554
No 10
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=99.14 E-value=1.2e-09 Score=104.40 Aligned_cols=150 Identities=7% Similarity=0.095 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCCCCcCCCcCCCCCchHHHH
Q 005722 197 SYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASR 276 (681)
Q Consensus 197 ~~~l~~~~i~rl~~~~~~~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LGlhfPasDIP~qaR 276 (681)
...++.++...+.+ +.+++++++.+++.+++++|+||+.||.++++....+.++...++. .+..+|. - .-..
T Consensus 28 ~~~~L~~is~~l~~--~~dl~~il~~i~~~l~~~l~~d~~~i~l~~~~~~~~~~~~~~~~~~---~~~~~~~--~-~~~~ 99 (184)
T 3p01_A 28 QMSLLTVLVQVTQA--SNSLEAILTPIATAFAESFAVNACILQMLEGQTLSTIQGFYSQQGT---VNNWLNQ--D-PLTN 99 (184)
T ss_dssp HHHHHHHHHHHHHH--CSSSHHHHHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEEEESSSS---CCCCGGG--C-HHHH
T ss_pred HHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCceeeeeeeccccCc---cCcccCC--C-cHHH
Confidence 34455666677777 6799999999999999999999999999944332222232333332 2333442 2 3345
Q ss_pred HHHHcCCeEEeecCCCCCceeecCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCc
Q 005722 277 FLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRK 356 (681)
Q Consensus 277 ~Ly~~n~vR~I~Dv~~~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~k 356 (681)
..+..++..+|.|+...| . -++.+++...|++|.|++||+.+ |+
T Consensus 100 ~~~~~~~~~~i~d~~~~~-------------~----------~~~~~~~~~~~~~s~l~vPL~~~-------------~~ 143 (184)
T 3p01_A 100 EAIATGQIQVAANIAKDP-------------K----------LASISQYQDNGIQSHVVIPITYR-------------NE 143 (184)
T ss_dssp HHHHHCSCEEESCGGGCH-------------H----------HHTCHHHHHHTCCEEEEEEEEET-------------TE
T ss_pred HHHhhCCeEEEeccccCc-------------c----------ccchhHHHHhCccEEEEEEEEEC-------------CE
Confidence 567777777888876432 0 11135678899999999999987 89
Q ss_pred eeEEEEeecCCCCCCChhHHHHHHHHHHHHHHHH
Q 005722 357 LWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQV 390 (681)
Q Consensus 357 LWGLi~cHh~spr~v~~~~R~a~e~l~q~~s~ql 390 (681)
+||+|.+|+..|+.|+.+.....+.++..++..|
T Consensus 144 ~~GvL~l~~~~~~~f~~~d~~ll~~lA~q~aiAi 177 (184)
T 3p01_A 144 MLGVLSLQWQQPISLREDELTLIHLSAQLVAIAL 177 (184)
T ss_dssp EEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999777899998877666665555554444
No 11
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=99.09 E-value=3.6e-08 Score=105.41 Aligned_cols=321 Identities=11% Similarity=0.105 Sum_probs=179.4
Q ss_pred HHHHHHHHhcCCCCCHHH----HHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCCCCcCCCcCCCCCchHHHH
Q 005722 201 AAKAISRLQSLPSGNISL----LCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASR 276 (681)
Q Consensus 201 ~~~~i~rl~~~~~~~l~~----l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LGlhfPasDIP~qaR 276 (681)
+.+++..+.+ .+++. +++.+++.+++++|+||+.||.++++.. +....+....-....+..+|... --+.
T Consensus 11 l~~~~~~l~~---~~l~~~l~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~-~l~~~~~~g~~~~~~~~~~~~~~--g~~g 84 (398)
T 1ykd_A 11 VHQTLSMLDS---HGFENILQEMLQSITLKTGELLGADRTTIFLLDEEKQ-ELWSIVAAGEGDRSLEIRIPADK--GIAG 84 (398)
T ss_dssp HHHHHHHHTT---SCHHHHHHHHHHHHHHHHHHHHTEEEEEEEEEETTTT-EEEEEEECCGGGCCCCCEEETTS--HHHH
T ss_pred HHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHhCCceEEEEEEECCCC-eEEEEeecCCCCccceeecCCCC--chhh
Confidence 3344444433 45555 5666667799999999999999998864 44444433222334566777653 2334
Q ss_pred HHHHcCCeEEeecCCCCCceeecCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCc
Q 005722 277 FLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRK 356 (681)
Q Consensus 277 ~Ly~~n~vR~I~Dv~~~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~k 356 (681)
..+..++.-.|.|+.... | |..-+.+.......++++.|++||+.. +|+
T Consensus 85 ~v~~~~~~v~i~d~~~~~-----------~--------~~~~~~~~~~~~~~~~~s~l~vPl~~~------------~g~ 133 (398)
T 1ykd_A 85 EVATFKQVVNIPFDFYHD-----------P--------RSIFAQKQEKITGYRTYTMLALPLLSE------------QGR 133 (398)
T ss_dssp HHHHHCCCEEECSCGGGS-----------G--------GGHHHHHHHHHHCCCCSCEEEEEEECS------------SCC
T ss_pred hhhccCcEEeccchhccc-----------c--------hhhcccccCcccCcCCceEEEEEEECC------------CCC
Confidence 456666666777775310 0 111133444556788999999999952 289
Q ss_pred eeEEEEeecC---------------CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhc-cC
Q 005722 357 LWGLVVCHHT---------------SPRFVPFPLRYACEFLIQVFGVQVNKEVELSAQL-REKHILRTQTVLCDMLL-RD 419 (681)
Q Consensus 357 LWGLi~cHh~---------------spr~v~~~~R~a~e~l~q~~s~ql~~~~el~~q~-~e~~~~~~~~~l~~~l~-~~ 419 (681)
+||.|.+++. .++.++.+.....+.++..++..|.......... ..++......+...+.. ..
T Consensus 134 ~iGvl~l~~~~~~~~~~~~~l~~~~~~~~f~~~d~~~l~~~a~~~~~al~~~~l~~~~~~~~~~l~~L~~~~~~l~~~~~ 213 (398)
T 1ykd_A 134 LVAVVQLLNKLKPYSPPDALLAERIDNQGFTSADEQLFQEFAPSIRLILESSRSFYIATQKQRAAAAMMKAVKSLSQSSL 213 (398)
T ss_dssp EEEEEEEEEEBCSCCCTTCCHHHHBCTTCCCHHHHHHGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred EEEEEEEeccCCcccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 9999999988 6888887776666666666666554322111111 11111112222222222 22
Q ss_pred Ccccccc-CChhhhhhccCCeEEEEEC----CeEEEecc----------CCCHHHHHHHHHHHHHhcCCCeeeee-cccc
Q 005722 420 SPVGIVT-QTPNVMDLVKCDGAALYYR----GKLWLLGV----------TPTEEQIKDIAEWLLEYHRGSTGLST-DSLV 483 (681)
Q Consensus 420 ~~~~i~~-~~~~ll~L~~adGaal~~~----~~~~~~G~----------tP~~~~i~~l~~wl~~~~~~~~~~~t-d~L~ 483 (681)
+...+.. -...+..+++||++.|+.- +..+.... .|.. ..+..|..... . .++.. |.-.
T Consensus 214 dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~-~-~~~i~~d~~~ 288 (398)
T 1ykd_A 214 DLEDTLKRVMDEAKELMNADRSTLWLIDRDRHELWTKITQDNGSTKELRVPIG---KGFAGIVAASG-Q-KLNIPFDLYD 288 (398)
T ss_dssp CHHHHHHHHHHHHHHHTTEEEEEEEEEETTTTEEEEEEECSSSCEEEEEEETT---SHHHHHHHHHC-C-CEEECSCGGG
T ss_pred CHHHHHHHHHHHHHHHhCcCeEEEEEEECCCCEEEEEEecCCCceeeeeccCC---CchhhHHhccC-C-eEEecccccc
Confidence 3333222 2346778899998888653 23333211 1111 23455555442 2 33333 3222
Q ss_pred ccCCCCc--c--ccccccccEEEEEeC-CCc----EEEEeecCcceEEeecCCCCCCCCCCCCCCccCCchhhhHHhhhc
Q 005722 484 EAGYPGA--L--ALGDAVCGIAAVKIT-SKD----FLFWFRSHTAKEIKWGGAKHDSGGKDGGRKMHPRSSFKAFLEVVK 554 (681)
Q Consensus 484 ~~~~p~a--~--~~~~~~~G~lav~i~-~~~----~l~wFR~e~~~~v~WaG~p~k~~~~~~g~~l~PR~SFe~w~E~v~ 554 (681)
+-.|... . ..+..+..++++||- .++ .|..++... .| -.|+.||+.|.+...
T Consensus 289 ~~~~~~~~~~~~~~~~~~~s~l~vPl~~~~~~~iGvl~l~~~~~-----------------~~--~~~~~~~~~~~~~~~ 349 (398)
T 1ykd_A 289 HPDSATAKQIDQQNGYRTCSLLCMPVFNGDQELIGVTQLVNKKK-----------------TG--EFPPYNPETWPIAPE 349 (398)
T ss_dssp STTCHHHHHHHHHHTCCCCCEEEEEEECSSSCEEEEEEEEEECC-----------------SS--CCCCCCGGGTTCCCG
T ss_pred CcccCcccchhhhcCCeeeeEEEEeeecCCCCEEEEEEEEecCC-----------------cc--ccccccccccccccc
Confidence 1112111 0 012235779999995 221 222222110 11 125677789999999
Q ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHH
Q 005722 555 QRSLPWEDVEMDAIHSLQLILRGSLQDE 582 (681)
Q Consensus 555 ~~s~pW~~~Ei~aa~~L~l~l~~~l~~~ 582 (681)
+...+|++.|++.+..+...+.-++...
T Consensus 350 ~~~~~f~~~d~~ll~~la~~~a~al~na 377 (398)
T 1ykd_A 350 CFQASFDRNDEEFMEAFNIQAGVALQNA 377 (398)
T ss_dssp GGCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9889999999999988876666555443
No 12
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=99.03 E-value=8.3e-09 Score=96.99 Aligned_cols=154 Identities=10% Similarity=0.073 Sum_probs=104.7
Q ss_pred HHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCC-------CCCcCCCcCCCCC
Q 005722 199 KLAAKAISRL-QSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPD-------LEPYLGFHYPATD 270 (681)
Q Consensus 199 ~l~~~~i~rl-~~~~~~~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~-------l~s~LGlhfPasD 270 (681)
.++.++...+ .+ ..|++++++.+++.+++++|+||+.||-+|+|+..-+..-..... ....-..++|...
T Consensus 13 ~~Ll~~~~~i~~~--~~dld~ll~~i~~~~~~~l~ad~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (189)
T 2zmf_A 13 DFLLDVSKTYFDN--IVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKELYSDLFDIGEEKEGKPVFKKTKEIRFSIEK 90 (189)
T ss_dssp HHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTEEEEEEECCSCEETTEECCEECCCCEEETTS
T ss_pred HHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHhCCCEEEEEEEecCCcEEEEEEEecccccccccccccccccccCCCc
Confidence 3444444443 44 469999999999999999999999999999998765544332211 1122233455443
Q ss_pred chHHHHHHHHcCCeEEeecCCCCCceeecCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCcccccccc
Q 005722 271 IPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDND 350 (681)
Q Consensus 271 IP~qaR~Ly~~n~vR~I~Dv~~~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~ 350 (681)
- -....+..++...|.|+...| ....+......+++++.|++||+.+
T Consensus 91 ~--~~~~v~~~~~~~~i~d~~~~~----------------------~~~~~~~~~~~~~~~s~l~vPl~~~--------- 137 (189)
T 2zmf_A 91 G--IAGQVARTGEVLNIPDAYADP----------------------RFNREVDLYTGYTTRNILCMPIVSR--------- 137 (189)
T ss_dssp H--HHHHHHHHCCCEEESCGGGST----------------------TCCTHHHHHHCCCCCCEEEEEEEET---------
T ss_pred c--HHHHHHHhCCeEEEecccccc----------------------cccccchhhcccccceEEEeeeccc---------
Confidence 1 233456677777788776332 1234556778899999999999987
Q ss_pred ccccCceeEEEEeecC-CCCCCChhHHHHHHHHHHHHHHHHH
Q 005722 351 QEQGRKLWGLVVCHHT-SPRFVPFPLRYACEFLIQVFGVQVN 391 (681)
Q Consensus 351 ~~~~~kLWGLi~cHh~-spr~v~~~~R~a~e~l~q~~s~ql~ 391 (681)
|++||.|..+++ .++.++.+.....+.|+..++..|.
T Consensus 138 ----~~~~Gvl~l~~~~~~~~f~~~d~~ll~~lA~q~a~Ai~ 175 (189)
T 2zmf_A 138 ----GSVIGVVQMVNKISGSAFSKTDENNFKMFAVFCALALH 175 (189)
T ss_dssp ----TEEEEEEEEEEETTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ----CceeeEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 899999987655 5888888766666656555555443
No 13
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.02 E-value=3.4e-10 Score=100.88 Aligned_cols=72 Identities=17% Similarity=0.233 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHH
Q 005722 604 DELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSA 675 (681)
Q Consensus 604 ~el~~~~~el~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~a 675 (681)
++|++....++.++++++++|+++|.+|+|++||+++++|+||+++|++|+++.+++++++.......+...
T Consensus 9 ~~l~~~~~~~~~l~~~~~d~i~~~d~~g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~ 80 (130)
T 1d06_A 9 DVVRARDAHLRSILDTVPDATVVSATDGTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRY 80 (130)
T ss_dssp HHHHHHTSCHHHHHTTCSSEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCcCeEEEECCCCeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHHHH
Confidence 455666667889999999999999999999999999999999999999999999999888776655555443
No 14
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=98.96 E-value=1.3e-09 Score=96.07 Aligned_cols=71 Identities=23% Similarity=0.183 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHH
Q 005722 605 ELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSA 675 (681)
Q Consensus 605 el~~~~~el~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~a 675 (681)
+|++..+.++.++++++++|+++|.+|+|+++|+++++++||+++|++|+++.++.++.+.......+...
T Consensus 5 ~l~~se~~~~~l~e~~~d~i~~~d~~g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~ 75 (117)
T 2r78_A 5 NLYFQSNAYRALFEHAIDGIFIMDAEGHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAASLARI 75 (117)
T ss_dssp SHHHHHHHHHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTTSHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhcCCceEEEECCCCCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccchhHHHHHHHHH
Confidence 34556678999999999999999999999999999999999999999999988776554433333344433
No 15
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=98.95 E-value=3e-08 Score=91.39 Aligned_cols=153 Identities=14% Similarity=0.109 Sum_probs=107.5
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCCCCcCCCcCCCCCchHHHHHHHHcCC
Q 005722 204 AISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNK 283 (681)
Q Consensus 204 ~i~rl~~~~~~~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LGlhfPasDIP~qaR~Ly~~n~ 283 (681)
+...|.+ +.+++++++.+++.+++++|+||+.||-++++...-.+.-+..+.-+..-+..||-.+-..-....+..++
T Consensus 7 i~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (169)
T 3oov_A 7 ISSRIQK--SIDVDEVLRLCAEGLHDVLGYERVNILMADTARTSLSFVAAVGTADFNPAGVVLPLDQRGGVITKCFTDRQ 84 (169)
T ss_dssp HHHHHHH--CCCHHHHHHHHHHHHHHTTCCSEEEEEEECTTSSEEEEEEEESCSSCCCTTCEEESSGGGHHHHHHHHHTC
T ss_pred HHHHHhh--hcCHHHHHHHHHHHHHHhhCCceEEEEEEeCCCCeEEEEEEeCchhhhhhcccCCcccccchHHHHHhcCC
Confidence 3445555 56999999999999999999999999999988765555544454444455677776443455667777788
Q ss_pred eEEeecCCCCCceeecCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCceeEEEEe
Q 005722 284 VRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVC 363 (681)
Q Consensus 284 vR~I~Dv~~~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~kLWGLi~c 363 (681)
..+|.|+...|-...+. . ..+++...|+++.+.+||+.+ |+++|.|..
T Consensus 85 ~~~i~d~~~~~~~~~~~-----------------~--~~~~~~~~~~~s~l~vPl~~~-------------~~~iGvl~~ 132 (169)
T 3oov_A 85 VYMIDDVSAYPTDFRLQ-----------------S--PYDAIRALRSKSFVICPIVVK-------------GEAIGVFAV 132 (169)
T ss_dssp CEEESCGGGSCGGGSCC-----------------T--TGGGCGGGCCSSEEEEEEEET-------------TEEEEEEEE
T ss_pred CEEeccccchhhhhhcc-----------------c--cHHHHHhcCcCcEEEEEEEeC-------------CcEEEEEEE
Confidence 88888887433111000 0 023456789999999999987 899999999
Q ss_pred ecCCCC-CCChhHHHHHHHHHHHHHHHH
Q 005722 364 HHTSPR-FVPFPLRYACEFLIQVFGVQV 390 (681)
Q Consensus 364 Hh~spr-~v~~~~R~a~e~l~q~~s~ql 390 (681)
++..+. .++.+.....+.++..++..|
T Consensus 133 ~~~~~~~~f~~~d~~~l~~~a~~~a~ai 160 (169)
T 3oov_A 133 DNRSSRRSLNDTDVDTIKLFADQASSAI 160 (169)
T ss_dssp ECTTSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred EccccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 998754 477776666665555554444
No 16
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=98.93 E-value=6.8e-08 Score=90.26 Aligned_cols=159 Identities=10% Similarity=0.046 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEE-eecCCCC-CCcCCCcCCCCCchHHH
Q 005722 198 YKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVA-ECRRPDL-EPYLGFHYPATDIPQAS 275 (681)
Q Consensus 198 ~~l~~~~i~rl~~~~~~~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVA-Es~~~~l-~s~LGlhfPasDIP~qa 275 (681)
..++.++...|.+ +.+++++++.+++.+++++|+||+.||-+++|...-.+. +...... ....+..+|..+-+ +
T Consensus 5 l~ll~~i~~~l~~--~~d~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 80 (177)
T 3k2n_A 5 LKLMQYIGDAIGT--IRDPQELFRTVTDKLRLLFAFDSAVIITIDRERREASVFFEMLRFELPEQLRHQTRSIAGTW--L 80 (177)
T ss_dssp HHHHHHHHHHHTT--CCSHHHHHHHHHHHHTTTCCCSEEEEEEEETTTTEEEEEEEECSSCCCSTTCCSEEECTTSG--G
T ss_pred HHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCeEEeEEecccCCCCchhhcccCCccccH--H
Confidence 3456667777777 679999999999999999999999999999988765553 2111111 22223344433211 1
Q ss_pred HHHHHcCCeEEeecCCCCCceeecCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccC
Q 005722 276 RFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGR 355 (681)
Q Consensus 276 R~Ly~~n~vR~I~Dv~~~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~ 355 (681)
...+..++..++ |....+ +. ......+..+.+...|+++.|++||+.+ |
T Consensus 81 ~~v~~~~~~~~~-d~~~~~-----------~~------~~~~~~~~~~~~~~~~~~s~l~vPL~~~-------------~ 129 (177)
T 3k2n_A 81 EGHLDDRTVTVA-SIARDI-----------PS------FGADGAPLLWTLHELGMRQIVLSPLRSG-------------G 129 (177)
T ss_dssp GGGTTCCSCEEE-ETTTTC-----------TT------TTTTTCHHHHHHHHHTCCEEEEEEEEET-------------T
T ss_pred HHHhccCCceEe-chhhcc-----------cc------cCCcchhHHHHHHHcCceEEEEEEEEEC-------------C
Confidence 223334444444 544210 00 0001134456788999999999999987 7
Q ss_pred ceeEEEEeecCCCCCCChhHHHHHHHHHHHHHHHHH
Q 005722 356 KLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVN 391 (681)
Q Consensus 356 kLWGLi~cHh~spr~v~~~~R~a~e~l~q~~s~ql~ 391 (681)
+++|.|..+++.|+.++.+.....+.++..++..|.
T Consensus 130 ~~iGvL~l~~~~~~~f~~~d~~ll~~lA~~~a~Ai~ 165 (177)
T 3k2n_A 130 RVIGFLSFVSAEEKLWSDGDKSLLSGVSSSIAIAVS 165 (177)
T ss_dssp EEEEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888776666666665555553
No 17
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP}
Probab=98.91 E-value=1.1e-07 Score=86.71 Aligned_cols=154 Identities=12% Similarity=0.079 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCCCCcCCCcCCCCCchHHHHH
Q 005722 198 YKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRF 277 (681)
Q Consensus 198 ~~l~~~~i~rl~~~~~~~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LGlhfPasDIP~qaR~ 277 (681)
...+.++...+.+ +.+++++++.+++.+++++|+|++.||-++++...-++.-+...+-+..-+..+|..+ + -...
T Consensus 9 l~~l~~~~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~i~l~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~-~-~~~~ 84 (171)
T 3ci6_A 9 LDTLRRIVQEINS--SVSLHDSLDIMVNQVADAMKVDVCSIYLLDERNQRYLLMASKGLNPESVGHVSLQLSE-G-LVGL 84 (171)
T ss_dssp HHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTS-H-HHHH
T ss_pred HHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCEEEEEeccCCCcccccceeeeccC-C-eehh
Confidence 3445566677777 5699999999999999999999999999998865444433333332223344565543 2 4455
Q ss_pred HHHcCCeEEeecCCCCCceeecCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCce
Q 005722 278 LIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKL 357 (681)
Q Consensus 278 Ly~~n~vR~I~Dv~~~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~kL 357 (681)
.+..++...+.|+...|- ..+.......|+++.+.+||+.+ |++
T Consensus 85 ~~~~~~~~~~~d~~~~~~-----------------------~~~~~~~~~~~~~s~l~vPl~~~-------------~~~ 128 (171)
T 3ci6_A 85 VGQREEIVNLENASKHER-----------------------FAYLPETGEEIYNSFLGVPVMYR-------------RKV 128 (171)
T ss_dssp HHHHTSCEEESSGGGSTT-----------------------C---------CCCEEEEEEEEET-------------TEE
T ss_pred hhccCceEEecCCCcCcc-----------------------hhccccccccccceEEEEeEEEC-------------CEE
Confidence 666777777777653220 00111136678999999999976 899
Q ss_pred eEEEEeecCCCCCCChhHHHHHHHHHHHHHHHHH
Q 005722 358 WGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQVN 391 (681)
Q Consensus 358 WGLi~cHh~spr~v~~~~R~a~e~l~q~~s~ql~ 391 (681)
+|.|.+.+..++.++.+....++.++..++..|.
T Consensus 129 ~Gvl~l~~~~~~~f~~~~~~~l~~la~~~a~al~ 162 (171)
T 3ci6_A 129 MGVLVVQNKQPQDFSEAAESFLVTLCAQLSGVIA 162 (171)
T ss_dssp EEEEEEEESSCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888888777777666666655443
No 18
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii}
Probab=98.88 E-value=7.2e-08 Score=89.01 Aligned_cols=155 Identities=8% Similarity=0.065 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCCCCcCCCcCCCCCchHHH
Q 005722 196 KSYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQAS 275 (681)
Q Consensus 196 ~~~~l~~~~i~rl~~~~~~~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LGlhfPasDIP~qa 275 (681)
+....+.++...+.+ +.+++++++.+++.+.+++|+|++.||-+++++..-++.-+...+-+..-...+|..+ .-.
T Consensus 5 ~~L~~L~~i~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~--~~~ 80 (171)
T 3trc_A 5 NMLKILRQITQEVNA--APNLEQALKLVVVRLCEALPADACSLFICDDVHGEYVLMATQGLNSKQVGKLRLKFGE--GLI 80 (171)
T ss_dssp HHHHHHHHHHHHHHH--CSSHHHHHHHHHHHHHHHTTCSEEEEEEEETTTTEEEEEEEESSCGGGTTTCEEETTC--HHH
T ss_pred HHHHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHhCCcEEEEEEEECCCCeEEEEEecCCCccccccEeecCCC--Chh
Confidence 444556667777777 5699999999999999999999999999999875433333332222222233555554 234
Q ss_pred HHHHHcCCeEEeecCCCCCceeecCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccC
Q 005722 276 RFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGR 355 (681)
Q Consensus 276 R~Ly~~n~vR~I~Dv~~~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~ 355 (681)
...+..++.-+|.|+...|-- . . .+ .+...|+++.+.+||+.+ |
T Consensus 81 ~~~~~~~~~~~~~d~~~~~~~----------~--------~-~~----~~~~~~~~s~l~vPl~~~-------------~ 124 (171)
T 3trc_A 81 GLVGEREEPINLADAPLHPAY----------K--------H-RP----ELGEEDYHGFLGIPIIEQ-------------G 124 (171)
T ss_dssp HHHHHHTSCEEESCGGGSTTC----------C--------C-CG----GGCCCCCCEEEEEEEEET-------------T
T ss_pred hHHHhcCCeEEeCCCCCCCcc----------c--------c-cc----cCCcccccEEEEEeEEEC-------------C
Confidence 556667777777777642210 0 0 01 124578999999999987 8
Q ss_pred ceeEEEEeecCCCCCCChhHHHHHHHHHHHHHHHH
Q 005722 356 KLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGVQV 390 (681)
Q Consensus 356 kLWGLi~cHh~spr~v~~~~R~a~e~l~q~~s~ql 390 (681)
+++|.|.+.+..|+.++.+.....+.++..++..|
T Consensus 125 ~~~Gvl~~~~~~~~~f~~~d~~~l~~la~~~a~ai 159 (171)
T 3trc_A 125 ELLGILVIQQLESHHFAEEEEAFCVTLAIHLAAEI 159 (171)
T ss_dssp EEEEEEEEEESSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999898888877766666665555444
No 19
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=98.86 E-value=1.6e-09 Score=94.76 Aligned_cols=63 Identities=8% Similarity=0.131 Sum_probs=57.9
Q ss_pred HHHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHHH
Q 005722 614 VRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAF 676 (681)
Q Consensus 614 ~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~al 676 (681)
..|++++++.|+.+|.+|+|+++|+++++++||+++|++|+++.+++||++++.+...+..++
T Consensus 5 ~ll~e~~~d~i~~~d~~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~ 67 (121)
T 3f1p_B 5 GLNVCQPTRFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVV 67 (121)
T ss_dssp ---CCCCCEEEEEECTTSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHT
T ss_pred cceecCCCceEEEECCCceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHH
Confidence 358899999999999999999999999999999999999999999999999999998888876
No 20
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=98.86 E-value=4e-09 Score=100.12 Aligned_cols=72 Identities=13% Similarity=0.137 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHHHc
Q 005722 605 ELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFL 677 (681)
Q Consensus 605 el~~~~~el~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~al~ 677 (681)
++++....+..++++++++|+++|.+|+|++||+++++++|++++|++|+++.+++++ ..+.+...+..++.
T Consensus 16 ~~~~~~~~l~~il~~~~~gi~v~D~~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~ 87 (152)
T 3mxq_A 16 AMAKSRLLLSELLDQLSFALCIVRNDYVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALV 87 (152)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEETTSBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEcCCCEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHh
Confidence 4555566678999999999999999999999999999999999999999999999988 88888888888764
No 21
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens}
Probab=98.86 E-value=7.7e-08 Score=89.48 Aligned_cols=148 Identities=10% Similarity=0.013 Sum_probs=99.4
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCCCCcCCCcCCCCCchHHHHHHHHc
Q 005722 202 AKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMK 281 (681)
Q Consensus 202 ~~~i~rl~~~~~~~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LGlhfPasDIP~qaR~Ly~~ 281 (681)
.++...+.. +.+++++++.+++.+.+++|+|++.||.+++++. .+.+ ....+-+..-+..+|-.+=+ ....+..
T Consensus 18 ~~i~~~l~~--~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~-~~~~-~~g~~~~~~~~~~~~~~~~~--~~~~~~~ 91 (181)
T 3e0y_A 18 EEISMLVSS--DFDLPEVLQHVTAKVATQLKVSVCNIYLREGDEV-VLAA-THGFDPAFIGKIRIKIGDGI--TGSVARD 91 (181)
T ss_dssp HHHHHHHST--TSCHHHHHHHHHHHHHHHTTCSCEEEEEEETTEE-EEEE-EESSCGGGTTTCEEETTTSS--HHHHHHH
T ss_pred HHHHHHHhh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEEcCCCc-eEEE-ecCCCHHHhccccccCCCCe--eeehhhc
Confidence 455566666 5699999999999999999999999999998876 4433 33322222233445544322 2345666
Q ss_pred CCeEEeecCCCCCceeecCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCceeEEE
Q 005722 282 NKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLV 361 (681)
Q Consensus 282 n~vR~I~Dv~~~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~kLWGLi 361 (681)
++..+|.|+...|-. .+...+...|+++.+++||+.+ |+++|.|
T Consensus 92 ~~~~~i~d~~~~~~~-----------------------~~~~~~~~~~~~s~l~vPl~~~-------------~~~iGvl 135 (181)
T 3e0y_A 92 GQYISLSRASQDPRY-----------------------RYFPELQEEKYNSMLSFPIGDK-------------KEVYGVI 135 (181)
T ss_dssp CCCEEEEEECCCCCC--------------------------------CEEEEEEEEEECS-------------SCEEEEE
T ss_pred CCeEEecCcccCccc-----------------------cccccccccCcceEEEEEEEeC-------------CeEEEEE
Confidence 777778887643210 0111234578999999999976 8999999
Q ss_pred EeecCCCCCCChhHHHHHHHHHHHHHHHHH
Q 005722 362 VCHHTSPRFVPFPLRYACEFLIQVFGVQVN 391 (681)
Q Consensus 362 ~cHh~spr~v~~~~R~a~e~l~q~~s~ql~ 391 (681)
.+++..++.++.+.....+.++..++..|.
T Consensus 136 ~~~~~~~~~f~~~~~~~l~~la~~~a~al~ 165 (181)
T 3e0y_A 136 NLNTTSIRSFHEDEIYFVSIIANLILTAIK 165 (181)
T ss_dssp EEEESSCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeeCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999988888777666666665555443
No 22
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca}
Probab=98.85 E-value=5.4e-08 Score=91.64 Aligned_cols=142 Identities=12% Similarity=0.051 Sum_probs=102.1
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCCCCcCCCcCCCCCchHHHHHHHHcCCeEEeecCCC
Q 005722 213 SGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLA 292 (681)
Q Consensus 213 ~~~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LGlhfPasDIP~qaR~Ly~~n~vR~I~Dv~~ 292 (681)
+.+++++++.+++.+.+++|+|++.||-+++++.-.++|-.-.+.-..--....|..+ ......+..++..++.|+..
T Consensus 15 ~~~~~~~l~~i~~~~~~~~~~~~~~i~l~~~~~~l~~~a~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~d~~~ 92 (181)
T 2qyb_A 15 TLDLQIIMDDLLNLLLKEFKLDLAVIRLVDEKGVLRVRSYSGKGIAGIAGKDWEPEIE--TYIGEAFLSNRLQFVNDTQY 92 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSEEEEEEECTTSCEEEEEEEESCTTSTTCSCBCCCTT--SHHHHHHHHTSCEEESCGGG
T ss_pred ccCHHHHHHHHHHHHHHHhCCcEEEEEEECCCCCEEEEEEeCCCcceecccccccCCC--CchhhhhhcCCCEEecChhc
Confidence 4589999999999999999999999999965555555554433221100112344222 23455667777778888763
Q ss_pred CCceeecCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCc-eeEEEEeec-CCCCC
Q 005722 293 PPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRK-LWGLVVCHH-TSPRF 370 (681)
Q Consensus 293 ~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~k-LWGLi~cHh-~spr~ 370 (681)
.+ .+...+++...|+++.+++||..+ ++ +||.|.+++ ..|+.
T Consensus 93 ~~-----------------------~~~~~~~~~~~g~~s~~~vPl~~~-------------~~~~~GvL~l~~~~~~~~ 136 (181)
T 2qyb_A 93 MT-----------------------KPLTRELMQKEGIKSFAHIPISRK-------------GEPPFGILSVFSRTIVGL 136 (181)
T ss_dssp CS-----------------------CHHHHHHHHHTTCCEEEEEEECCT-------------TSCCCEEEEEEESSCSSC
T ss_pred CC-----------------------chhhHHHHHhcCcceEEEEEEEeC-------------CCeEEEEEEEecCCCCCC
Confidence 21 256778888999999999999976 67 999999999 67888
Q ss_pred CChhHHHHHHHHHHHHHHHHHH
Q 005722 371 VPFPLRYACEFLIQVFGVQVNK 392 (681)
Q Consensus 371 v~~~~R~a~e~l~q~~s~ql~~ 392 (681)
++.+.....+.++..++..|..
T Consensus 137 f~~~d~~lL~~la~~~a~al~~ 158 (181)
T 2qyb_A 137 FNEPFLNLLESLAGQLAQAVKI 158 (181)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 8888777777777666665544
No 23
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=98.83 E-value=7.8e-09 Score=90.66 Aligned_cols=58 Identities=21% Similarity=0.243 Sum_probs=52.3
Q ss_pred HHHHHHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHH
Q 005722 611 NEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVV 668 (681)
Q Consensus 611 ~el~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~ 668 (681)
+.++.++++++++|+++|.+|+|++||+++++++||+++|++|+++.++.+++.....
T Consensus 5 ~~~~~~~~~~~~~i~~~d~~g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~ 62 (120)
T 2gj3_A 5 EIFRQTVEHAPIAISITDLKANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLV 62 (120)
T ss_dssp HHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHH
T ss_pred HHHHHHHHhCCCeEEEECCCCCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHH
Confidence 4577899999999999999999999999999999999999999999998876665433
No 24
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=98.80 E-value=3.6e-09 Score=94.70 Aligned_cols=59 Identities=12% Similarity=0.109 Sum_probs=50.6
Q ss_pred HHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHH
Q 005722 615 RLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLS 673 (681)
Q Consensus 615 ~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~ 673 (681)
.|++++++.|+++|.+|+|+|+|+++++++||+++|++|+++.+++||+|.+.+...+.
T Consensus 3 ~lle~~~d~i~v~d~~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~ 61 (111)
T 2vlg_A 3 FPLQTKTDIHAVLASNGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFY 61 (111)
T ss_dssp ------CCEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHH
T ss_pred chhhcCCCEEEEEcCCCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999998877664
No 25
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=98.80 E-value=1.3e-08 Score=89.02 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhh--hcCcccccccCCCHHHHHH
Q 005722 603 IDELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQA--IGTALVDLVAGDSVDVVKN 670 (681)
Q Consensus 603 ~~el~~~~~el~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~El--iGk~l~~lv~~~~~~~~~~ 670 (681)
.++|++..+.++.++++++++|+++|.+|+|++||+++++++||+++|+ +|+++.++++ +...+..
T Consensus 9 e~~L~~~~~~~~~l~e~~~~~i~~~d~~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~ 76 (126)
T 3bwl_A 9 EKRLEETSSRLEALFENSPDMIDVLDADGTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQT 76 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCSSEEEEECTTCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEEcCCCCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHH
Confidence 3556777788999999999999999999999999999999999999999 6788888887 4444433
No 26
>2e4s_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; GAF domain, structural genomics, NPPSFA; HET: MSE CMP; 2.10A {Homo sapiens} PDB: 2zmf_A*
Probab=98.77 E-value=1.4e-07 Score=88.80 Aligned_cols=154 Identities=9% Similarity=0.085 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCC-------C-CCcCCCcCCC
Q 005722 198 YKLAAKAISRLQSLPS-GNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPD-------L-EPYLGFHYPA 268 (681)
Q Consensus 198 ~~l~~~~i~rl~~~~~-~~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~-------l-~s~LGlhfPa 268 (681)
...+.++...+.. + .+++++++.+++.+++++|+|++.||-++++... .+......+ + +...+.++|.
T Consensus 12 ~~~L~~~~~~l~~--~~~d~~~~l~~i~~~~~~~~~a~~~~i~l~d~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (189)
T 2e4s_A 12 NDFLLDVSKTYFD--NIVAIDSLLEHIMIYAKNLVNADRCALFQVDHKNKE-LYSDLFDIGEEKEGKPVFKKTKEIRFSI 88 (189)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHTEEEEEEEEEETTTTE-EEEEEEEEEEEETTEEEEEECCCCEEET
T ss_pred HHHHHHHHHHHHh--cccCHHHHHHHHHHHHHHHhCCCeEEEEEEECCCCE-EEEEEeccCccccccccccCCcceEeeC
Confidence 3445556666654 4 4999999999999999999999999999987653 333221111 1 2344566665
Q ss_pred CCchHHHHHHHHcCCeEEeecCCCCCceeecCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCcccccc
Q 005722 269 TDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELD 348 (681)
Q Consensus 269 sDIP~qaR~Ly~~n~vR~I~Dv~~~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~ 348 (681)
.+ .-+...+..++..+|.|+...| .-+.+......+++++.|.+||+.+
T Consensus 89 ~~--~~~~~v~~~~~~~~i~d~~~~~----------------------~~~~~~~~~~~~~~~s~l~vPl~~~------- 137 (189)
T 2e4s_A 89 EK--GIAGQVARTGEVLNIPDAYADP----------------------RFNREVDLYTGYTTRNILCMPIVSR------- 137 (189)
T ss_dssp TS--HHHHHHHHHCCCEEESCGGGST----------------------TCCTHHHHHHCCCCCCEEEEEEEET-------
T ss_pred CC--cHHHHHHHhCCEEEecCCCcCc----------------------ccChhhccccCCccceEEEEEeccC-------
Confidence 42 2345666777777788776321 0122345667899999999999976
Q ss_pred ccccccCceeEEEEeecCCCC-CCChhHHHHHHHHHHHHHHHHH
Q 005722 349 NDQEQGRKLWGLVVCHHTSPR-FVPFPLRYACEFLIQVFGVQVN 391 (681)
Q Consensus 349 ~~~~~~~kLWGLi~cHh~spr-~v~~~~R~a~e~l~q~~s~ql~ 391 (681)
|+++|.|.+++..++ .++.+.....+.++..++..|.
T Consensus 138 ------~~~iGvl~l~~~~~~~~f~~~d~~ll~~la~~~a~ai~ 175 (189)
T 2e4s_A 138 ------GSVIGVVQMVNKISGSAFSKTDENNFKMFAVFCALALH 175 (189)
T ss_dssp ------TEEEEEEEEEEETTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred ------CeEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999998766 7777666666666655555443
No 27
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=98.76 E-value=2.9e-09 Score=97.64 Aligned_cols=60 Identities=17% Similarity=0.226 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHH
Q 005722 611 NEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKN 670 (681)
Q Consensus 611 ~el~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~ 670 (681)
+.+..++++++++|+++|.+|+|+++|+++++|+||+++|++|+++.+++++++......
T Consensus 7 ~~l~~i~~~~~d~i~~~D~~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~ 66 (129)
T 3mfx_A 7 ETIELFIQHLTEAMILVNANGFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDN 66 (129)
T ss_dssp HHHHHHHTTCSSEEEEEETTSBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGC
T ss_pred HHHHHHHhcCCceEEEECCCCEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHH
Confidence 567889999999999999999999999999999999999999999999999887664333
No 28
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=98.75 E-value=1.1e-06 Score=102.05 Aligned_cols=204 Identities=10% Similarity=0.035 Sum_probs=119.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeec-CCCCCCcCCCcCCCCCchHHHHH
Q 005722 199 KLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECR-RPDLEPYLGFHYPATDIPQASRF 277 (681)
Q Consensus 199 ~l~~~~i~rl~~~~~~~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~-~~~l~s~LGlhfPasDIP~qaR~ 277 (681)
+.+.+++..|. ..+++++++++++.+++++|+||+.||.|++|... .+.... ...++. ..++|..- -...
T Consensus 15 ~~L~~i~~~ls---~ldl~~ll~~il~~l~~~l~ad~~~i~L~d~~~~~-l~~~~~~g~~~~~--~~~~p~~G---i~g~ 85 (691)
T 3ibj_A 15 RKILQLCGELY---DLDASSLQLKVLQYLQQETRASRCCLLLVSEDNLQ-LSCKVIGDKVLGE--EVSFPLTG---CLGQ 85 (691)
T ss_dssp HHHHHHHHHCC---CSSHHHHHHHHHHHHHHHTTBSCEEEEEECTTSSE-EEEEEETTEEEEE--EEEEECCS---SSHH
T ss_pred HHHHHHHHHHH---hccHHHHHHHHHHHHHHHhCCCEEEEEEEECCCCe-EEEEecCCCcccc--ceecCCcc---HHHH
Confidence 44555566665 46999999999999999999999999999998654 333322 211221 23444431 2234
Q ss_pred HHHcCCeEEeecCCCCCceeecCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCce
Q 005722 278 LIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKL 357 (681)
Q Consensus 278 Ly~~n~vR~I~Dv~~~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~kL 357 (681)
.+..++.-.|+|+...| ..+..+....+++|-|.+||+.+ .+|++
T Consensus 86 v~~~~~pv~i~d~~~~~------------------------~~~~~~~~~~~~~S~L~vPI~~~-----------~~g~v 130 (691)
T 3ibj_A 86 VVEDKKSIQLKDLTSED------------------------VQQLQSMLGCELQAMLCVPVISR-----------ATDQV 130 (691)
T ss_dssp HHHHCCCEEGGGSCHHH------------------------HHHHHHHHTSCCSCEEEEEEECS-----------SSCSE
T ss_pred HHHHCCeEEeccchhcc------------------------ccccccccCCccceEEEEEeEcC-----------CCCcE
Confidence 55556655666665211 23556777888999999999964 12799
Q ss_pred eEEEEeecCC-CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhc-cCCcccccc-CChhhhh
Q 005722 358 WGLVVCHHTS-PRFVPFPLRYACEFLIQVFGVQVNKEVELSAQLREKHIL-RTQTVLCDMLL-RDSPVGIVT-QTPNVMD 433 (681)
Q Consensus 358 WGLi~cHh~s-pr~v~~~~R~a~e~l~q~~s~ql~~~~el~~q~~e~~~~-~~~~~l~~~l~-~~~~~~i~~-~~~~ll~ 433 (681)
||.|..+++. ++.+..+.....+.++..++..+.....+....++++.+ ....+...+.. ..+...+.. -...+..
T Consensus 131 iGvL~l~~~~~~~~ft~~d~~lL~~la~~~a~al~~a~l~~~~~~~~~~l~~L~ei~~~l~~~~~dl~~ll~~i~~~~~~ 210 (691)
T 3ibj_A 131 VALACAFNKLEGDLFTDEDEHVIQHCFHYTSTVLTSTLAFQKEQKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARN 210 (691)
T ss_dssp EEEEEEESBSSSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCTTTHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 9999988875 556666555555555555555553321111111111111 11112222222 123333322 2346778
Q ss_pred hccCCeEEEEECC
Q 005722 434 LVKCDGAALYYRG 446 (681)
Q Consensus 434 L~~adGaal~~~~ 446 (681)
+++||.++|+.-+
T Consensus 211 ~l~ad~~~i~L~d 223 (691)
T 3ibj_A 211 LSNAEICSVFLLD 223 (691)
T ss_dssp HHTEEEEEEEEEC
T ss_pred HhCCCeEEEEEEe
Confidence 8999998887654
No 29
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=98.75 E-value=5.1e-09 Score=90.62 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHH
Q 005722 609 ITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSA 675 (681)
Q Consensus 609 ~~~el~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~a 675 (681)
..+.++.++++++++|+++|.+|+|+++|+++++++||++++++|+++.++++++...........+
T Consensus 17 ~~~~~~~i~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (125)
T 3fc7_A 17 TRKKFESLVSDSPDGIVHLTTNGTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSA 83 (125)
T ss_dssp ---------CCSCCEEEEEETTSBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEcCCCeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHH
Confidence 5567889999999999999999999999999999999999999999999999554444443333333
No 30
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=98.74 E-value=1.2e-08 Score=86.10 Aligned_cols=67 Identities=13% Similarity=0.108 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHHHcc
Q 005722 611 NEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLA 678 (681)
Q Consensus 611 ~el~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~al~G 678 (681)
+.++.++++++++|+++|.+|+|+++|+++++++|+++++++|+++.+++ +++.+.....+..++.|
T Consensus 3 ~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~ 69 (114)
T 3luq_A 3 ERLRLFTEHAPAALAMFDREMRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLAG 69 (114)
T ss_dssp HHHHHHHHTCSSEEEEEETTCBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCceEEEEcCCcEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhcC
Confidence 45788999999999999999999999999999999999999999999998 55666677777776654
No 31
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=98.73 E-value=1.5e-08 Score=86.52 Aligned_cols=58 Identities=14% Similarity=0.060 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHH
Q 005722 610 TNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDV 667 (681)
Q Consensus 610 ~~el~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~ 667 (681)
.+.++.++++++++|+++|.+|+|+++|+++++++||+++|++|+++.+++++.....
T Consensus 12 ~~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~ 69 (118)
T 3olo_A 12 FKFAHYLINNAVEASFCLGDNWQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD 69 (118)
T ss_dssp HHHHHHHHHHCSSEEEEECTTSBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC
T ss_pred HHHHHHHHhcCCceEEEECCCCcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH
Confidence 4456789999999999999999999999999999999999999999999886554443
No 32
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=98.73 E-value=1.9e-07 Score=98.18 Aligned_cols=205 Identities=9% Similarity=0.012 Sum_probs=125.1
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCCCCcCCCcCCCCCchHHHHHHH
Q 005722 200 LAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLI 279 (681)
Q Consensus 200 l~~~~i~rl~~~~~~~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LGlhfPasDIP~qaR~Ly 279 (681)
.+.++...| + +.+++++++.+++.+++++|+||+.||.+++|.. +.++.+.... ...-+.++|...=+ ....+
T Consensus 15 ~l~~l~~~l-~--~~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~-~l~~~~~~g~-~~~~~~~~~~~~g~--~g~~~ 87 (368)
T 1mc0_A 15 KILQLCGEL-F--DLDATSLQLKVLQYLQQETQATHCCLLLVSEDNL-QLSCKVIGDK-VLGEEVSFPLTMGR--LGQVV 87 (368)
T ss_dssp HHHHHHHTC-C--CSSHHHHHHHHHHHHHHHSCEEEEEEEEECSSSC-EEEEEEETTE-EEEEEEEEESSSSS--HHHHH
T ss_pred HHHHHHHHH-h--hhhHHHHHHHHHHHHHHHhCCcEEEEEEEeCCCC-eEEEEecCCC-ccccceeeccccCH--HHHHH
Confidence 344555666 4 5699999999999999999999999999998864 5555543221 11223445544211 23456
Q ss_pred HcCCeEEeecCCCCCceeecCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCceeE
Q 005722 280 MKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWG 359 (681)
Q Consensus 280 ~~n~vR~I~Dv~~~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~kLWG 359 (681)
..++.-.|.|+...| | ++......++++|.|++||+.+ .+|++||
T Consensus 88 ~~~~~~~i~d~~~~~--------------------~----~~~~~~~~~~~~s~l~vPl~~~-----------~~~~~~G 132 (368)
T 1mc0_A 88 EDKQCIQLKDLTSDD--------------------V----QQLQNMLGCELQAMLCVPVISR-----------ATDQVVA 132 (368)
T ss_dssp HHCCCEEGGGSCHHH--------------------H----HHHHHHHCSCCCCEEEEEEECT-----------TTCSEEE
T ss_pred hcCCeEEeccccccc--------------------c----cccccccCcccceEEEEEeecC-----------CCCcEEE
Confidence 777777777775321 1 4556777889999999999975 1269999
Q ss_pred EEEeecCC-CCCCChhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcc-CCccccc-cCChhhhhhc
Q 005722 360 LVVCHHTS-PRFVPFPLRYACEFLIQVFGVQVNKEVELS-AQLREKHILRTQTVLCDMLLR-DSPVGIV-TQTPNVMDLV 435 (681)
Q Consensus 360 Li~cHh~s-pr~v~~~~R~a~e~l~q~~s~ql~~~~el~-~q~~e~~~~~~~~~l~~~l~~-~~~~~i~-~~~~~ll~L~ 435 (681)
.|.++++. ++.++.+.....+.++..++..|....... .+..++.......+...+... .+...+. .-...+..++
T Consensus 133 vl~l~~~~~~~~f~~~d~~~l~~la~~~~~al~~~~l~~~~~~~~~~l~~l~~i~~~l~~~~~~~~~~l~~i~~~~~~~~ 212 (368)
T 1mc0_A 133 LACAFNKLGGDFFTDEDEHVIQHCFHYTGTVLTSTLAFQKEQKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLS 212 (368)
T ss_dssp EEEEEEESSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred EEEeecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHh
Confidence 99988876 455777666666767766666664321111 111111111111111122112 1222222 1234677889
Q ss_pred cCCeEEEEECC
Q 005722 436 KCDGAALYYRG 446 (681)
Q Consensus 436 ~adGaal~~~~ 446 (681)
+||+++|+.-+
T Consensus 213 ~~~~~~i~l~d 223 (368)
T 1mc0_A 213 NAEICSVFLLD 223 (368)
T ss_dssp TEEEEEEEEEC
T ss_pred cccEEEEEEEe
Confidence 99988887654
No 33
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=98.70 E-value=9.1e-09 Score=89.37 Aligned_cols=63 Identities=11% Similarity=0.145 Sum_probs=58.2
Q ss_pred HHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHHHc
Q 005722 615 RLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFL 677 (681)
Q Consensus 615 ~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~al~ 677 (681)
.+++++++.|+.+|.+|+|+++|+++++++||+++|++|+++.+++++++.+.+...+..++.
T Consensus 7 ~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~ 69 (121)
T 2kdk_A 7 EINVKPTEFITRFAVNGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQ 69 (121)
T ss_dssp CCCCCSSEEEEEECTTSBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHT
T ss_pred ccccCCccEEEEECCCeeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHh
Confidence 467889999999999999999999999999999999999999999999999988888777654
No 34
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=98.68 E-value=2.1e-08 Score=87.55 Aligned_cols=57 Identities=19% Similarity=0.243 Sum_probs=49.3
Q ss_pred hcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHH
Q 005722 619 TAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSA 675 (681)
Q Consensus 619 ~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~a 675 (681)
+++|+|+++|.+|+|++||+++++||||+++|++|+++.+++++++.......+...
T Consensus 1 ~~~d~i~~~d~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~ 57 (119)
T 2vv6_A 1 TIPDAMIVIDGHGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRY 57 (119)
T ss_dssp -CCCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHH
T ss_pred CCcceEEEECCCCeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999888776655554443
No 35
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=98.67 E-value=2e-08 Score=87.00 Aligned_cols=59 Identities=7% Similarity=0.076 Sum_probs=54.7
Q ss_pred hcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHHHc
Q 005722 619 TAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFL 677 (681)
Q Consensus 619 ~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~al~ 677 (681)
.+++.|+.+|.+|+|+++|+++++++||+++|++|+++.+++||++.+.+...+..++.
T Consensus 7 ~~~~~i~~~d~~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~ 65 (117)
T 3f1p_A 7 DSKTFLSEHSMDMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCT 65 (117)
T ss_dssp GGGEEEEEECTTCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHH
T ss_pred CCccEEEEECCCceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHh
Confidence 35789999999999999999999999999999999999999999999998888887764
No 36
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=98.64 E-value=4.9e-09 Score=92.38 Aligned_cols=73 Identities=10% Similarity=0.084 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHHH
Q 005722 604 DELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAF 676 (681)
Q Consensus 604 ~el~~~~~el~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~al 676 (681)
+.++...+....++++++++|+++|.+|+|+++|+++++++|+++++++|+++.+++++.....+...+..++
T Consensus 5 ~~~~~~~~~~~~il~~~~~~i~~~D~~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~ 77 (118)
T 3fg8_A 5 HHHHHHSSGRENLYFQGGLGFMALDEDLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVL 77 (118)
T ss_dssp --------CCCCSSSCTTCEEEEECTTCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHH
T ss_pred cccccccchHHHHHhhCCceEEEECCCCeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHH
Confidence 3445555666789999999999999999999999999999999999999999999998776666666665554
No 37
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti}
Probab=98.61 E-value=2.5e-07 Score=84.62 Aligned_cols=135 Identities=12% Similarity=0.048 Sum_probs=85.5
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCCCC-cCCCcCCCCCchHHHHHHHHcCCeEEeecCCC
Q 005722 214 GNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEP-YLGFHYPATDIPQASRFLIMKNKVRMICDCLA 292 (681)
Q Consensus 214 ~~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l~s-~LGlhfPasDIP~qaR~Ly~~n~vR~I~Dv~~ 292 (681)
.+++++++.+++.+.+++|+|++.||-+++++.=.+++- .++++ +... +..+-| ....+..++.-+|.|+..
T Consensus 2 ~~l~~~l~~~~~~~~~~~~~~~~~i~l~d~~~~l~~~a~---~g~~~~~~~~--~~~~~~--~~~~~~~~~~~~i~d~~~ 74 (151)
T 3hcy_A 2 NAIEEVYEATLDAIQGALNCDRASILLFDEAGTMRFVAA---RGLSEHYQRA--VDGHSP--WITGANEPEPIFVENVDD 74 (151)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEEEECTTSCEEEEEE---ESCCHHHHHH--TCBCCS--CC---CCCCCEEESCGGG
T ss_pred ccHHHHHHHHHHHHHHhhcCCEEEEEEEcCCCcEEEEee---CCCCHHHHhh--ccCCCc--hhhhhhcCCcEEEeChhh
Confidence 588999999999999999999999999999873333322 12110 0000 000000 001111222222222221
Q ss_pred CCceeecCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCceeEEEEeecCCCCCCC
Q 005722 293 PPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVP 372 (681)
Q Consensus 293 ~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~kLWGLi~cHh~spr~v~ 372 (681)
. ...+.+.+.+...|+++.+++||+.+ |+++|.|..++..|+.++
T Consensus 75 ~----------------------~~~~~~~~~~~~~g~~s~~~vPl~~~-------------~~~iGvl~~~~~~~~~f~ 119 (151)
T 3hcy_A 75 A----------------------EFSRELKESIVGEGIAALGFFPLVTE-------------GRLIGKFMTYYDRPHRFA 119 (151)
T ss_dssp S----------------------CCCHHHHHHHHHHTCCEEEEEEEESS-------------SSEEEEEEEEESSCCCCC
T ss_pred C----------------------cccchhHHHHHhcCchheEEeceEEC-------------CEEEEEEEEecCCCCCCC
Confidence 1 11355677888999999999999975 899999999998899888
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 005722 373 FPLRYACEFLIQVFGVQV 390 (681)
Q Consensus 373 ~~~R~a~e~l~q~~s~ql 390 (681)
.+.+...+.++..++..|
T Consensus 120 ~~~~~ll~~~a~~~a~ai 137 (151)
T 3hcy_A 120 DSEIGMALTIARQLGFSI 137 (151)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 877666665555555444
No 38
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=98.60 E-value=8.7e-08 Score=89.08 Aligned_cols=67 Identities=22% Similarity=0.210 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCccEEEEcCC---CceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHHH
Q 005722 610 TNEMVRLIETAAVPILAVDAS---GNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAF 676 (681)
Q Consensus 610 ~~el~~Lie~s~d~I~~vD~~---G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~al 676 (681)
.+.+..++++++++|+++|.+ |+|++||+++++++||+++|++|+++.+++++++.......+..++
T Consensus 6 ~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~ 75 (176)
T 4hia_A 6 FEKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDAL 75 (176)
T ss_dssp HHHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHH
Confidence 456788999999999999999 9999999999999999999999999999998887776666555554
No 39
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=98.59 E-value=2.2e-08 Score=86.31 Aligned_cols=65 Identities=15% Similarity=0.251 Sum_probs=59.8
Q ss_pred HHHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHHHcc
Q 005722 614 VRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLA 678 (681)
Q Consensus 614 ~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~al~G 678 (681)
+.++++++++|+++|.+|+|+++|+++++++|+++++++|+++.+++++++...+...+..+..+
T Consensus 2 ~~l~~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (126)
T 3mjq_A 2 KNFLETIEDMILIINREGRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAG 66 (126)
T ss_dssp CTTGGGCSSEEEEEETTSBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred hhHHhhCCceEEEEeCCCcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhC
Confidence 45789999999999999999999999999999999999999999999999999888888777654
No 40
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=98.58 E-value=3.5e-08 Score=83.46 Aligned_cols=74 Identities=14% Similarity=0.135 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHhcCccEEEEcCC-CceeeecHHhHHhcCCChhhhhcCc--ccccccCCCHHHHHHHHHHHHcc
Q 005722 605 ELRIITNEMVRLIETAAVPILAVDAS-GNVNGWNSKAAELTGLTVDQAIGTA--LVDLVAGDSVDVVKNMLSSAFLA 678 (681)
Q Consensus 605 el~~~~~el~~Lie~s~d~I~~vD~~-G~I~~~N~a~~~l~G~~~~EliGk~--l~~lv~~~~~~~~~~~l~~al~G 678 (681)
++++..+.++.++++++++|+++|.+ |+|+++|+++++++|+++++++|++ +.+++++++...+...+.....|
T Consensus 5 ~l~~~~~~~~~~~~~~~~~i~~~d~~~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
T 3eeh_A 5 QAAKSERRVRELTEATNDILWEFTADLSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQSLMDG 81 (125)
T ss_dssp -----CHHHHHHHSCCCCEEEEEETTSSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCceEEEEEcCCCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHHHHcC
Confidence 34555677889999999999999999 9999999999999999999999998 77899999999888877765443
No 41
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=98.55 E-value=5e-08 Score=83.42 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhc--CcccccccCCCHHHHHHHHHHHHcc
Q 005722 607 RIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIG--TALVDLVAGDSVDVVKNMLSSAFLA 678 (681)
Q Consensus 607 ~~~~~el~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliG--k~l~~lv~~~~~~~~~~~l~~al~G 678 (681)
++..+.++.++++++++||.+|.+|.+++||+++++++||++++++| ..+.+++++++.+.+...+..++.+
T Consensus 3 ~~~~~~l~~~~~~~~~~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 76 (125)
T 3nja_A 3 AMAEKLLHTAESDAGIGSWVLHMESGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLG 76 (125)
T ss_dssp --------------CCEEEEEETTTTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCeeEEEEEcCCCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhc
Confidence 34456788899999999999999999999999999999999999999 6788999999999988888877643
No 42
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=98.52 E-value=9.8e-08 Score=95.54 Aligned_cols=71 Identities=14% Similarity=0.227 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhcCccEEEEcC---CCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHHH
Q 005722 606 LRIITNEMVRLIETAAVPILAVDA---SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAF 676 (681)
Q Consensus 606 l~~~~~el~~Lie~s~d~I~~vD~---~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~al 676 (681)
+++..+.++.++++++++|+++|. +|+|++||+++++++||+++|++|+++.+++++++.......+..++
T Consensus 58 l~~~~~~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l 131 (258)
T 3p7n_A 58 VQPPAQWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGV 131 (258)
T ss_dssp ---CCHHHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHH
Confidence 445556788999999999999999 99999999999999999999999999999998887776665555554
No 43
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=98.48 E-value=2e-07 Score=78.40 Aligned_cols=61 Identities=13% Similarity=0.057 Sum_probs=51.1
Q ss_pred HHHhcCccEEEEcC---CCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHHH
Q 005722 616 LIETAAVPILAVDA---SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAF 676 (681)
Q Consensus 616 Lie~s~d~I~~vD~---~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~al 676 (681)
.+++++++|+++|. +|+|+++|+++++++||+++|++|+++.+++++++.......+..++
T Consensus 2 ~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 65 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAI 65 (115)
T ss_dssp ---CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHH
T ss_pred ccccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHH
Confidence 57899999999999 99999999999999999999999999999998877665555555543
No 44
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=98.48 E-value=2.3e-07 Score=77.81 Aligned_cols=67 Identities=21% Similarity=0.310 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHHH
Q 005722 610 TNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAF 676 (681)
Q Consensus 610 ~~el~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~al 676 (681)
.+.++.++++++++|+++|.+|+|+++|+++++++|+++++++|+++..+.++++.......+..++
T Consensus 6 ~~~~~~~~~~~~~~i~~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 72 (124)
T 3lyx_A 6 LKQRAKAFDYVFDAIVVTDLQGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAV 72 (124)
T ss_dssp HHHHHHGGGTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCceEEEECCCCcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999997777777776555555543
No 45
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=98.48 E-value=1.4e-07 Score=84.00 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=44.5
Q ss_pred HHHHhcCccEEEEcCCC---ceeeecHHhHHhcCCChhhhhcCcccccccCCCHH
Q 005722 615 RLIETAAVPILAVDASG---NVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVD 666 (681)
Q Consensus 615 ~Lie~s~d~I~~vD~~G---~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~ 666 (681)
.++++++++|+++|.+| +|++||+++++++||+++|++|+++..+.+++...
T Consensus 3 ~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~ 57 (132)
T 2pr5_A 3 HMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDP 57 (132)
T ss_dssp ---CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCH
T ss_pred hHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCH
Confidence 57999999999999977 99999999999999999999999998887665544
No 46
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.47 E-value=9.1e-08 Score=82.79 Aligned_cols=53 Identities=28% Similarity=0.355 Sum_probs=46.5
Q ss_pred hcCccEEEEcCC-CceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHH
Q 005722 619 TAAVPILAVDAS-GNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNM 671 (681)
Q Consensus 619 ~s~d~I~~vD~~-G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~ 671 (681)
+++++|+++|.+ |+|+++|+++++||||+.+|++|+++.+++++++.......
T Consensus 6 ~~~~~i~~~d~~~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~ 59 (114)
T 1ll8_A 6 EFNKAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEAL 59 (114)
T ss_dssp TTTCEEEEEETTTCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHHHHT
T ss_pred CCCceEEEEECCCCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHHHHHH
Confidence 455799999999 99999999999999999999999999999998776654433
No 47
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1
Probab=98.46 E-value=5.6e-06 Score=86.96 Aligned_cols=147 Identities=12% Similarity=0.163 Sum_probs=101.9
Q ss_pred HHHHHhcCCC-CCHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCC--CCcCCCcCCCCCchHHHHHHHH
Q 005722 204 AISRLQSLPS-GNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDL--EPYLGFHYPATDIPQASRFLIM 280 (681)
Q Consensus 204 ~i~rl~~~~~-~~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l--~s~LGlhfPasDIP~qaR~Ly~ 280 (681)
+...|.+ . .+++++++.+++.+++++|+||+.||.+++ |+.+..+...++ +...+..+|... .-+...+.
T Consensus 186 i~~~l~~--~~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~---~~l~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~ 258 (368)
T 1mc0_A 186 VAKNLFT--HLDDVSVLLQEIITEARNLSNAEICSVFLLDQ---NELVAKVFDGGVVDDESYEIRIPADQ--GIAGHVAT 258 (368)
T ss_dssp HHHHHHH--TTTCHHHHHHHHHHHHHHHHTEEEEEEEEECS---SSEEEEEETTEECCCSTTCCEECTTS--HHHHHHHH
T ss_pred HHHHHHh--cccCHHHHHHHHHHHHHHHhcccEEEEEEEeC---CceEEEEeccccccccccceeecCCC--ceeeeehh
Confidence 3344444 3 489999999999999999999999999988 455555554322 345566777653 23556677
Q ss_pred cCCeEEeecCCCCCceeecCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCceeEE
Q 005722 281 KNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGL 360 (681)
Q Consensus 281 ~n~vR~I~Dv~~~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~kLWGL 360 (681)
.++...|.|+...|- . .........+++++.+++||+.. +|++||.
T Consensus 259 ~~~~~~i~d~~~~~~-----------~-----------~~~~~~~~~~~~~s~l~vPl~~~------------~~~~iGv 304 (368)
T 1mc0_A 259 TGQILNIPDAYAHPL-----------F-----------YRGVDDSTGFRTRNILCFPIKNE------------NQEVIGV 304 (368)
T ss_dssp HCCCEEESCSTTCTT-----------C-----------CCTTHHHHTCCCCCEEEEEEECT------------TSCEEEE
T ss_pred hCCEEEecCcccCcc-----------c-----------chhhhhccCCccceEEEEeeECC------------CCcEEEE
Confidence 888888888874321 0 01111233455799999999972 1799999
Q ss_pred EEeecCCCC-CCChhHHHHHHHHHHHHHHHHH
Q 005722 361 VVCHHTSPR-FVPFPLRYACEFLIQVFGVQVN 391 (681)
Q Consensus 361 i~cHh~spr-~v~~~~R~a~e~l~q~~s~ql~ 391 (681)
|.++++.++ .++.+....++.++..++..|.
T Consensus 305 l~l~~~~~~~~f~~~d~~ll~~la~~~a~ai~ 336 (368)
T 1mc0_A 305 AELVNKINGPWFSKFDEDLATAFSIYCGISIA 336 (368)
T ss_dssp EEEEEETTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999998875 6888777666666665555553
No 48
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=98.45 E-value=1.2e-07 Score=86.34 Aligned_cols=68 Identities=18% Similarity=0.178 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhcCccEEEEcC---CCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHHH
Q 005722 609 ITNEMVRLIETAAVPILAVDA---SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAF 676 (681)
Q Consensus 609 ~~~el~~Lie~s~d~I~~vD~---~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~al 676 (681)
..+.+..++++++++|+++|. +|+|++||+++++++||+++|++|+++.+++++++.......+..++
T Consensus 33 ~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~ 103 (166)
T 3ue6_A 33 PDYSLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAI 103 (166)
T ss_dssp CCCHHHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHH
Confidence 345678899999999999999 89999999999999999999999999999998887665555555443
No 49
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=98.45 E-value=4.2e-06 Score=80.08 Aligned_cols=137 Identities=10% Similarity=0.076 Sum_probs=91.7
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCCCCc--CCCcCCCCCchHHHHHHHHcCCeEEeecCC
Q 005722 214 GNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPY--LGFHYPATDIPQASRFLIMKNKVRMICDCL 291 (681)
Q Consensus 214 ~~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l~s~--LGlhfPasDIP~qaR~Ly~~n~vR~I~Dv~ 291 (681)
.+++++++.+++.++++++||++-+|-++++ +.+.++..+.-... .|..+|..+-+ ...-+..++..+ .|..
T Consensus 4 ~sldevL~~v~~~l~~~~~~d~~~l~L~~~~---~L~l~a~~~~~~~~~~~~~~ip~~~s~--~~~v~~~~~~~v-~~~~ 77 (165)
T 3o5y_A 4 MSLDDIINNMIDKLKLLVHFDRISFLLLANE---TLKLSHVYPKGSHSLDIGSTIPKEQSL--YWSALDQRQTIF-RSLT 77 (165)
T ss_dssp CCHHHHHHHHHHHHHHHSCCSEEEEEEEETT---EEEEEEEESTTCCSSCTTCEECSTTCH--HHHHHHHTSCEE-EESC
T ss_pred CCHHHHHHHHHHHHHHhcCcceEEEEEEECC---EEEEEEEecCCccccccccccCCccCH--HHHHHHhCCeEE-EcCc
Confidence 4899999999999999999999999999753 34444433332222 46677774422 223344444433 3433
Q ss_pred CCCceeecCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCceeEEEEeecCCCCCC
Q 005722 292 APPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFV 371 (681)
Q Consensus 292 ~~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~kLWGLi~cHh~spr~v 371 (681)
..+ . .-++..|+...|++|.|++||+.+ |+++|.|...+..++..
T Consensus 78 ~~~------------~----------~~~~~~~~~~~~~~S~l~vPL~~~-------------~~~iGvl~l~~~~~~~f 122 (165)
T 3o5y_A 78 DTQ------------D----------NFYEKQYLAILDLKSILVIPIYSK-------------NKRVGVLSIGRKQQIDW 122 (165)
T ss_dssp CTT------------C----------CCTTHHHHHTTTCCEEEEEEEECS-------------SCEEEEEEEEESSCCCC
T ss_pred ccc------------c----------ccccchHHHhhCCCEEEEeCeeEC-------------CEEEEEEEEEeCCCCCC
Confidence 211 0 012236889999999999999987 89999999999888777
Q ss_pred ChhHHHHHHHHHHHHHHHHH
Q 005722 372 PFPLRYACEFLIQVFGVQVN 391 (681)
Q Consensus 372 ~~~~R~a~e~l~q~~s~ql~ 391 (681)
+.+.....+.|+..++.-|.
T Consensus 123 ~~~d~~~l~~la~~~aiai~ 142 (165)
T 3o5y_A 123 SLDDLAFLEQLTDHLAVSIE 142 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 77655555555555554443
No 50
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=98.44 E-value=2e-07 Score=81.24 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=45.8
Q ss_pred HHHHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCC
Q 005722 613 MVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGD 663 (681)
Q Consensus 613 l~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~ 663 (681)
++.++++++++|+ +|.+|+|+++|+++++|+||+++|++|+++.++++++
T Consensus 5 ~~~~~~~~~~~i~-~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~ 54 (120)
T 3mqq_A 5 YKTAFHLAPIGLV-LSRDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSS 54 (120)
T ss_dssp HHHHHHHCSSEEE-EEETTEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSH
T ss_pred HHHHHhcCCceEE-EecCCEEHHHHHHHHHHhCcCHHHhCCCchhhccCCh
Confidence 6789999999996 5889999999999999999999999999999887654
No 51
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=98.44 E-value=3.1e-07 Score=90.36 Aligned_cols=66 Identities=14% Similarity=0.168 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHHH
Q 005722 611 NEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAF 676 (681)
Q Consensus 611 ~el~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~al 676 (681)
+.+..++++++++|+++|.+|+|+++|+++++++||+++|++|+++..+.++.+.......+..++
T Consensus 111 ~~~~~~~~~~~~~i~~~d~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~ 176 (227)
T 3ewk_A 111 ARLKQAMDANSEMILLTDRAGRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEAL 176 (227)
T ss_dssp HHHHHHHHTCCSEEEEECTTSCEEEECHHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCeEEEEcCCCcEEEEchHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHH
Confidence 456778999999999999999999999999999999999999999999888766665555555443
No 52
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=98.43 E-value=1.1e-07 Score=80.84 Aligned_cols=61 Identities=20% Similarity=0.196 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHhcCccEEEEcCCCceeeecHHhHHhcCC---ChhhhhcCcccccccCCC
Q 005722 604 DELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGL---TVDQAIGTALVDLVAGDS 664 (681)
Q Consensus 604 ~el~~~~~el~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~---~~~EliGk~l~~lv~~~~ 664 (681)
++++...++++.++++.+++|+++|.+|+|+++|+++++++|| +.++++|+++.+++++..
T Consensus 8 ~~l~~~~~~~~~il~~~~~~i~~~d~~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~ 71 (118)
T 2w0n_A 8 YEISTLFEQRQAMLQSIKEGVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD 71 (118)
T ss_dssp HHHCTTHHHHHHHHHCCCCCCEEEBTTTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH
T ss_pred HHHHHHHHHHHHHHhhccccEEEECCCCcEeehhHHHHHHhCCCccChhhhhccCcccccCchh
Confidence 3445556678899999999999999999999999999999997 889999999999887653
No 53
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=98.42 E-value=1e-07 Score=81.20 Aligned_cols=68 Identities=22% Similarity=0.240 Sum_probs=61.7
Q ss_pred HHHHHHHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcc--cccccCCCHHHHHHHHHHHHc
Q 005722 610 TNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTAL--VDLVAGDSVDVVKNMLSSAFL 677 (681)
Q Consensus 610 ~~el~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l--~~lv~~~~~~~~~~~l~~al~ 677 (681)
.++++.++++++++||.+|.+|.++++|+++++++||+++|++|++. .+++||++++.+...+..++.
T Consensus 3 ~~~~~~l~~~~~~~i~~~d~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~ 72 (118)
T 3icy_A 3 AEELQALVDNIPAAIYHLDVSGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLRE 72 (118)
T ss_dssp HHHHHHHHTTCCCCCEEECTTSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCceEEEEEcCCCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHh
Confidence 45688999999999999999999999999999999999999999864 689999999999888887753
No 54
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=98.41 E-value=2e-07 Score=84.17 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHHH
Q 005722 606 LRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAF 676 (681)
Q Consensus 606 l~~~~~el~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~al 676 (681)
+++....+..+++.++++|+++|.+|+|++||+++++++|++.++++|+++.+++++++.......+..+.
T Consensus 35 ~~~~~~~~~~~l~~~~~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (167)
T 1v9y_A 35 DNAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNR 105 (167)
T ss_dssp -----CCHHHHHHTCSSEEEEECTTSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHH
T ss_pred HhhhhHHHHHHHHhCCCCEEEECCCCcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHh
Confidence 34445567889999999999999999999999999999999999999999999998887766656555554
No 55
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=98.40 E-value=4.9e-07 Score=76.20 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCccEEEEc---CCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHH
Q 005722 610 TNEMVRLIETAAVPILAVD---ASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSA 675 (681)
Q Consensus 610 ~~el~~Lie~s~d~I~~vD---~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~a 675 (681)
.+.+..++++++++|+++| .+|+|+++|+++++++|++.++++|+++.+++++++.......+..+
T Consensus 5 ~~~~~~~~~~~~~~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (130)
T 2z6d_A 5 SQELKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDC 73 (130)
T ss_dssp --CHHHHHHHTTCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhcccceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHH
Confidence 4557889999999999999 99999999999999999999999999999998877665544444433
No 56
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=98.39 E-value=2.7e-07 Score=83.99 Aligned_cols=64 Identities=11% Similarity=0.220 Sum_probs=57.4
Q ss_pred HHHHHHHHhcCccEEEEc-CCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHHH
Q 005722 611 NEMVRLIETAAVPILAVD-ASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAF 676 (681)
Q Consensus 611 ~el~~Lie~s~d~I~~vD-~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~al 676 (681)
+.++.++++++++|+++| .+|+|+++|+++++++|++ +++|+++.+++++.....+...+..++
T Consensus 17 ~~~~~~~~~~~~~i~~~d~~~~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (158)
T 3k3c_A 17 EDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVY 81 (158)
T ss_dssp HHHHHHHHHCSSEEEEEETTTTEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHH
T ss_pred HHHHHHHhcCCceEEEEECCCcEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHH
Confidence 468899999999999999 9999999999999999999 999999999999887766666666665
No 57
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.36 E-value=2.5e-07 Score=85.41 Aligned_cols=47 Identities=23% Similarity=0.376 Sum_probs=44.0
Q ss_pred HHHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccc
Q 005722 614 VRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLV 660 (681)
Q Consensus 614 ~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv 660 (681)
..++++.++||+++|.+|+|++||+++++++||+++|++||++.+.+
T Consensus 20 ~~~ld~l~~Gii~lD~~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~ 66 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQVIGKNFFKDV 66 (125)
T ss_dssp HHHHTTCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCC
T ss_pred HHHHhccCceEEEECCCCEEEEEHHHHHHHhCCCHHHHcCCchhhhc
Confidence 45799999999999999999999999999999999999999998744
No 58
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A*
Probab=98.36 E-value=2.8e-06 Score=76.55 Aligned_cols=139 Identities=12% Similarity=-0.011 Sum_probs=92.4
Q ss_pred CCCHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCCCCcCC-CcCCCCCchHHHHHHHHcCCeEEeecCC
Q 005722 213 SGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLG-FHYPATDIPQASRFLIMKNKVRMICDCL 291 (681)
Q Consensus 213 ~~~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LG-lhfPasDIP~qaR~Ly~~n~vR~I~Dv~ 291 (681)
+.+++++++.+++.+++++|+|++.||-+++++.-.+++-.-.+ -+.+-. .++|..+ .-....+..++..++.|..
T Consensus 4 ~~~~~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~l~~~~~~g~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~ 80 (153)
T 2w3g_A 4 DPDLEATLRAIVHSATSLVDARYGAMEVHDRQHRVLHFVYEGID-EETVRRIGHLPKGL--GVIGLLIEDPKPLRLDDVS 80 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHTTEEEEEEEEECTTCCEEEEEEESCC-HHHHHHHCSCCCSC--THHHHHHHSCSCEEESSGG
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEEECCCCCEEEEEEecCC-HHHHHhhccCCCCC--CHHHHHHhcCCcEEecCcc
Confidence 34789999999999999999999999999966444444432111 111111 2444432 1234566777777777765
Q ss_pred CCCceeecCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCceeEEEEeecCCC-CC
Q 005722 292 APPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSP-RF 370 (681)
Q Consensus 292 ~~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~kLWGLi~cHh~sp-r~ 370 (681)
..|- ...... ...|+++.+.+||+.+ |+++|.|.+++..+ +.
T Consensus 81 ~~~~------------------~~~~~~------~~~~~~s~l~vPl~~~-------------~~~~Gvl~l~~~~~~~~ 123 (153)
T 2w3g_A 81 AHPA------------------SIGFPP------YHPPMRTFLGVPVRVR-------------DESFGTLYLTDKTNGQP 123 (153)
T ss_dssp GSTT------------------CCCCCT------TCCCCCCEEEEEEEET-------------TEEEEEEEEEEETTSCC
T ss_pred cCch------------------hcCCCC------cCCCCCeEEEeeEEEC-------------CEEEEEEEEeeCCCCCC
Confidence 3221 000001 3458899999999976 89999999999887 78
Q ss_pred CChhHHHHHHHHHHHHHHHHH
Q 005722 371 VPFPLRYACEFLIQVFGVQVN 391 (681)
Q Consensus 371 v~~~~R~a~e~l~q~~s~ql~ 391 (681)
++.+.....+.++..++..|.
T Consensus 124 f~~~~~~~l~~la~~~a~ai~ 144 (153)
T 2w3g_A 124 FSDDDEVLVQALAAAAGIAVA 144 (153)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 888777777666666655553
No 59
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=98.35 E-value=3.2e-07 Score=86.66 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCccEEEEcCCCceeeecHH---hHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHHHcc
Q 005722 611 NEMVRLIETAAVPILAVDASGNVNGWNSK---AAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLA 678 (681)
Q Consensus 611 ~el~~Lie~s~d~I~~vD~~G~I~~~N~a---~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~al~G 678 (681)
+.+..++++.+++|+++|.+|+|+|||++ ++++|| .+++++||++.++.++...+.++.++.....|
T Consensus 19 ~~l~~IL~~~~~gI~~vD~~g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~~~~~~~~~v~~i~~~l~~g 88 (151)
T 2qkp_A 19 EQANLILNHLPLEITFVNKDDIFQYYNDSVPAAEMVFK-RTPSQVGRNVELCHPPKVLDKVKKVFELLRNG 88 (151)
T ss_dssp HHHHHHHHHSSSEEEEEETTSBEEEECCCSCGGGCSSC-CCGGGTTSBGGGSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCceEEEcCCCeEEEEeCCCchhhhhcC-CCHHHcCCCHHHhCCHHHHHHHHHHHHHHHcC
Confidence 45788999999999999999999999999 999999 66899999999987766555555565544434
No 60
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.33 E-value=3.4e-07 Score=78.75 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=46.5
Q ss_pred HHHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCC
Q 005722 614 VRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGD 663 (681)
Q Consensus 614 ~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~ 663 (681)
..++++++++|+++|.+|+|+++|+++++++|++.++++|+++.+++++.
T Consensus 10 ~~il~~~~~~i~~~D~~g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~ 59 (115)
T 3b33_A 10 SAILNNMVTATLILDDGLAIRYANPAAELLFSQSAKRIVEQSLSQLIQHA 59 (115)
T ss_dssp HHHHHHCSSEEEEECTTCBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEE
T ss_pred HHHHhhcCceEEEECCCCcEEEECHHHHHHhCCCHHHHhCCCHHHHhCcc
Confidence 35899999999999999999999999999999999999999999987643
No 61
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=98.33 E-value=4.2e-07 Score=80.35 Aligned_cols=52 Identities=12% Similarity=0.245 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCccEEEEcCCCceeeecHHhHHhcC------------CChhhhhcCcccccccC
Q 005722 611 NEMVRLIETAAVPILAVDASGNVNGWNSKAAELTG------------LTVDQAIGTALVDLVAG 662 (681)
Q Consensus 611 ~el~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G------------~~~~EliGk~l~~lv~~ 662 (681)
.++..+++++++||+++|.+|+|+++|+++++|+| |++++++|+++.++.++
T Consensus 5 ~rl~~il~~~~~gviv~D~~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~ 68 (121)
T 4hi4_A 5 ARIASALDNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN 68 (121)
T ss_dssp HHHHHHHTTSSSEEEEEETTCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSS
T ss_pred HHHHHHHhcCCccEEEEcCCCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCC
Confidence 46788999999999999999999999999999995 89999999999988754
No 62
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=98.33 E-value=5.9e-07 Score=81.38 Aligned_cols=73 Identities=8% Similarity=0.024 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcC--cccccccCCCHHHHHHHHHHHHc
Q 005722 605 ELRIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGT--ALVDLVAGDSVDVVKNMLSSAFL 677 (681)
Q Consensus 605 el~~~~~el~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk--~l~~lv~~~~~~~~~~~l~~al~ 677 (681)
.|++..+.++.+++.++++||.+|.+|.+++||+++++++||+++++.|. .+.+++||+|++.+...+..++.
T Consensus 3 aL~~se~rl~~~~~~~~~g~w~~d~~~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~ 77 (142)
T 3mr0_A 3 ALSASEERFQLAVSGASAGLWDWNPKTGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLE 77 (142)
T ss_dssp ------CCHHHHHHHTTCEEEEECTTTCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcEEEEEEcCCCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHh
Confidence 34555667888999999999999999999999999999999999999874 57799999999999988887764
No 63
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=98.32 E-value=4.6e-07 Score=78.68 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=52.6
Q ss_pred HHHhcCccEEEEcC---CCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHHH
Q 005722 616 LIETAAVPILAVDA---SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAF 676 (681)
Q Consensus 616 Lie~s~d~I~~vD~---~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~al 676 (681)
++++++++|+++|. +|+|++||+++++++||++++++|+++.+++++++.......+..++
T Consensus 2 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~ 65 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAI 65 (128)
T ss_dssp CCCCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHH
T ss_pred ccccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHH
Confidence 46789999999999 99999999999999999999999999999998777665555555443
No 64
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.30 E-value=3.7e-07 Score=84.64 Aligned_cols=46 Identities=24% Similarity=0.407 Sum_probs=43.3
Q ss_pred HHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccc
Q 005722 615 RLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLV 660 (681)
Q Consensus 615 ~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv 660 (681)
.++++.++||+++|.+|+|++||+++++++||+++|++||++.+.+
T Consensus 26 ~~ld~l~~GiivlD~dg~I~~~N~~~e~isG~s~eeviGk~~f~~~ 71 (129)
T 1mzu_A 26 AEFDALPVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEV 71 (129)
T ss_dssp TTGGGCSSEEEEEETTCBEEEECHHHHHHHCCCHHHHTTSBCCCCC
T ss_pred HHHhccCceEEEECCCCeEEEEHHHHHHHhCCCHHHHcCCchhhhc
Confidence 3699999999999999999999999999999999999999998744
No 65
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=98.26 E-value=5.9e-07 Score=85.41 Aligned_cols=65 Identities=11% Similarity=0.219 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCccEEEEc-CCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHHH
Q 005722 610 TNEMVRLIETAAVPILAVD-ASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAF 676 (681)
Q Consensus 610 ~~el~~Lie~s~d~I~~vD-~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~al 676 (681)
.+.++.++++++++|+++| .+|+|+++|+++++++|++ +++|+++.+++++.....+...+..++
T Consensus 36 ~~~l~~l~~~~~~~i~~~d~~~g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
T 3kx0_X 36 AEDVRRIFEHIPAILVGLEGPDHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVY 101 (185)
T ss_dssp HHHHHHHHHHCSSEEEEEETTTTEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHH
T ss_pred HHHHHHHHhcCCceEEEEECCCcEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHH
Confidence 3568899999999999999 9999999999999999999 999999999998876654555555554
No 66
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.24 E-value=2e-06 Score=81.67 Aligned_cols=57 Identities=23% Similarity=0.324 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCH
Q 005722 609 ITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSV 665 (681)
Q Consensus 609 ~~~el~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~ 665 (681)
..+.++.++++.++||+++|.+|+|+++|+++++++|++.++++|+++.+++++...
T Consensus 78 ~~~~l~~il~~~~~gvi~~D~~g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~~ 134 (190)
T 2jhe_A 78 EHLALSALLEALPEPVLSVDMKSKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNF 134 (190)
T ss_dssp HHHHHHHHHHHCSSCEEEECTTCBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCCH
T ss_pred HHHHHHHHHHhCCCcEEEEcCCCCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCCH
Confidence 345788999999999999999999999999999999999999999999999887654
No 67
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A
Probab=98.23 E-value=3.9e-05 Score=71.69 Aligned_cols=125 Identities=16% Similarity=0.079 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEEecCCCC---eEEEEe-ecCCCCCCcCCCcCCCCCchHHHHHHHHcCCeEEeecC
Q 005722 215 NISLLCDVLVNEVSDLTGYDRVMVYKFHEDEH---GEVVAE-CRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDC 290 (681)
Q Consensus 215 ~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~---GeVVAE-s~~~~l~s~LGlhfPasDIP~qaR~Ly~~n~vR~I~Dv 290 (681)
+++++++.+++.+++++|+|+..||-.+++.. |+...+ +....-+.+.|..||... + -....+..++.-.|+|.
T Consensus 1 ~~~~~L~~i~~~a~~~~~ad~~~i~l~~~~~~~~~~~l~~~a~~g~~~~~~~~~~~~~~~-g-~~g~v~~~g~~v~v~d~ 78 (149)
T 2vjw_A 1 DPATVFRLVAAEALTLTGADGTLVAVPADPDASAAEELVIVEVAGAVPAEVEASAIPVQD-N-AIGQAFRDRAPRRLDVL 78 (149)
T ss_dssp CTHHHHHHHHHHHHHHHCCSEEEEEEECC----CCSEEEEEEEEETSCGGGTTCEEESSS-S-HHHHHHHHCCCEEESCC
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEcCCCCCcCceEEEEEEecCChHhhcCcccCCCC-C-HHHHHhhcCceEEecCc
Confidence 45789999999999999999999999987741 444333 333444567788888653 3 23345666666677887
Q ss_pred CCCCceeecCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCceeEEEEeecC-CCC
Q 005722 291 LAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHT-SPR 369 (681)
Q Consensus 291 ~~~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~kLWGLi~cHh~-spr 369 (681)
... | |+++-|++||..+ ++.-|.|..++. .|+
T Consensus 79 ~~d-------------------------~---------~~~s~l~vPL~~~-------------~~~~GvL~l~~~~~~~ 111 (149)
T 2vjw_A 79 DGP-------------------------G---------LGGPALVLPLRAT-------------DTVAGVLVAVQGSGAR 111 (149)
T ss_dssp CTT-------------------------S---------CEEEEEEEEEEET-------------TEEEEEEEEEEETTCC
T ss_pred ccC-------------------------C---------CCCeEEEEEEccC-------------CeEEEEEEEeeCCCCC
Confidence 632 1 7899999999976 799999999987 687
Q ss_pred CCChhHHHHHHHHHHHHHH
Q 005722 370 FVPFPLRYACEFLIQVFGV 388 (681)
Q Consensus 370 ~v~~~~R~a~e~l~q~~s~ 388 (681)
..+.+.....+.|+..++.
T Consensus 112 ~f~~~d~~ll~~lA~~aa~ 130 (149)
T 2vjw_A 112 PFTAEQLEMMTGFADQAAV 130 (149)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 7776555444444443333
No 68
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP}
Probab=98.22 E-value=4.3e-05 Score=81.40 Aligned_cols=139 Identities=14% Similarity=0.109 Sum_probs=96.4
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCCCCcCCCcCCCCCchHHHHHHHHcCCeEEee-cCCC
Q 005722 214 GNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMIC-DCLA 292 (681)
Q Consensus 214 ~~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LGlhfPasDIP~qaR~Ly~~n~vR~I~-Dv~~ 292 (681)
.+++++++.+++.+++++|+||+.||-+++++. +....+..++ ....+.++|... .-+...+..++...|. |+..
T Consensus 213 ~dl~~~l~~i~~~~~~~~~~~~~~i~l~d~~~~-~l~~~~~~~~-~~~~~~~~~~~~--~~~~~v~~~~~~~~i~~d~~~ 288 (398)
T 1ykd_A 213 LDLEDTLKRVMDEAKELMNADRSTLWLIDRDRH-ELWTKITQDN-GSTKELRVPIGK--GFAGIVAASGQKLNIPFDLYD 288 (398)
T ss_dssp CCHHHHHHHHHHHHHHHTTEEEEEEEEEETTTT-EEEEEEECSS-SCEEEEEEETTS--HHHHHHHHHCCCEEECSCGGG
T ss_pred CCHHHHHHHHHHHHHHHhCcCeEEEEEEECCCC-EEEEEEecCC-CceeeeeccCCC--chhhHHhccCCeEEecccccc
Confidence 489999999999999999999999999999874 4444433222 122334555542 3345667778888888 8763
Q ss_pred CCceeecCCCCCCCcccccccccCCChHH--HHHHHhcCCeeEEEEEEE-ecCccccccccccccCceeEEEEeecCC--
Q 005722 293 PPVKVIQDKKLDQPLSLCGSTLRAPHGCH--ARYMENMGSIASLVMSVT-INEAEDELDNDQEQGRKLWGLVVCHHTS-- 367 (681)
Q Consensus 293 ~pv~lv~~~~~~~pldLs~s~LRsvsp~H--~qYL~NMGV~ASlsvsIi-v~~~~~~~~~~~~~~~kLWGLi~cHh~s-- 367 (681)
.| ....+ ..-...+++++.|++||+ .+ |+++|.|..+++.
T Consensus 289 ~~----------------------~~~~~~~~~~~~~~~~~s~l~vPl~~~~-------------~~~iGvl~l~~~~~~ 333 (398)
T 1ykd_A 289 HP----------------------DSATAKQIDQQNGYRTCSLLCMPVFNGD-------------QELIGVTQLVNKKKT 333 (398)
T ss_dssp ST----------------------TCHHHHHHHHHHTCCCCCEEEEEEECSS-------------SCEEEEEEEEEECCS
T ss_pred Cc----------------------ccCcccchhhhcCCeeeeEEEEeeecCC-------------CCEEEEEEEEecCCc
Confidence 22 01222 222346778999999999 46 8999999999887
Q ss_pred ------------------CCCCChhHHHHHHHHHHHHHHHHH
Q 005722 368 ------------------PRFVPFPLRYACEFLIQVFGVQVN 391 (681)
Q Consensus 368 ------------------pr~v~~~~R~a~e~l~q~~s~ql~ 391 (681)
++.++.+....++.++..++..|.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~f~~~d~~ll~~la~~~a~al~ 375 (398)
T 1ykd_A 334 GEFPPYNPETWPIAPECFQASFDRNDEEFMEAFNIQAGVALQ 375 (398)
T ss_dssp SCCCCCCGGGTTCCCGGGCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 788888766666666655555443
No 69
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.21 E-value=2.3e-06 Score=68.51 Aligned_cols=40 Identities=33% Similarity=0.654 Sum_probs=38.3
Q ss_pred cCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCccccc
Q 005722 620 AAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDL 659 (681)
Q Consensus 620 s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~l 659 (681)
.+++|+++|.+|+|+++|+++++++|++.++++|+++.++
T Consensus 1 ~~~~i~~~d~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~ 40 (96)
T 3a0s_A 1 METAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDL 40 (96)
T ss_dssp CCCEEEEEETTSBEEEECHHHHHHHCCCHHHHTTSBGGGS
T ss_pred CCceEEEEcCCCCEeehhHHHHHHhCCCHHHhcCCCHHHC
Confidence 3689999999999999999999999999999999999988
No 70
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=98.20 E-value=1.7e-06 Score=74.95 Aligned_cols=46 Identities=15% Similarity=0.065 Sum_probs=40.5
Q ss_pred cCccEEEEcC---CCceeeecHHhHHhcCCChhhhhcCcccccccCCCH
Q 005722 620 AAVPILAVDA---SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSV 665 (681)
Q Consensus 620 s~d~I~~vD~---~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~ 665 (681)
.+++|+++|. +|+|+++|+++++++||+.+|++|+++..|.+++..
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~ 50 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTD 50 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCC
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCC
Confidence 5789999994 799999999999999999999999998877665543
No 71
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=98.16 E-value=2.1e-06 Score=77.76 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCccEEEEcCCC---ceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHH
Q 005722 611 NEMVRLIETAAVPILAVDASG---NVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSA 675 (681)
Q Consensus 611 ~el~~Lie~s~d~I~~vD~~G---~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~a 675 (681)
+.+..++++++++|+++|.+| +|+++|+++++++|++.++++|+++.+++++++.......+..+
T Consensus 25 ~~~~~i~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 92 (162)
T 3sw1_A 25 QLLQSMVDASNDGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKA 92 (162)
T ss_dssp HHHHHHHHTCSSEEEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHH
T ss_pred HHHHHHHhhccCcEEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHH
Confidence 457789999999999999999 99999999999999999999999999998877665554444444
No 72
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=98.15 E-value=2e-06 Score=77.11 Aligned_cols=47 Identities=17% Similarity=0.187 Sum_probs=43.3
Q ss_pred HHHhcCccEEEEc---CCCceeeecHHhHHhcCCChhhhhcCcccccccCC
Q 005722 616 LIETAAVPILAVD---ASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGD 663 (681)
Q Consensus 616 Lie~s~d~I~~vD---~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~ 663 (681)
+++++ ++|+++| .+|+|++||+++++++||+++|++|+++.++++++
T Consensus 31 ~~~~~-~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~ 80 (149)
T 3d72_A 31 PVDTS-VALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPD 80 (149)
T ss_dssp SCCTT-SCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTT
T ss_pred hhcCC-ccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCcc
Confidence 55664 9999999 79999999999999999999999999999998877
No 73
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=98.10 E-value=2e-06 Score=74.27 Aligned_cols=63 Identities=11% Similarity=0.094 Sum_probs=54.5
Q ss_pred HHHHHHhcCccEEEEcC---CCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHH
Q 005722 613 MVRLIETAAVPILAVDA---SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSA 675 (681)
Q Consensus 613 l~~Lie~s~d~I~~vD~---~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~a 675 (681)
+..++++++++|+++|. +|+|+++|+++++++|+++++++|+++.+++++++.......+..+
T Consensus 4 l~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 69 (146)
T 2v0u_A 4 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDA 69 (146)
T ss_dssp CCCTGGGSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHH
T ss_pred HHHHHhcCCCcEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHH
Confidence 34578999999999999 9999999999999999999999999999998888776555554444
No 74
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.10 E-value=2.5e-06 Score=88.45 Aligned_cols=61 Identities=11% Similarity=0.083 Sum_probs=52.3
Q ss_pred HHHHhcCccEEEEcC---CCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHH
Q 005722 615 RLIETAAVPILAVDA---SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSA 675 (681)
Q Consensus 615 ~Lie~s~d~I~~vD~---~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~a 675 (681)
.++++++++|+++|. +|+|++||+++++++||+++|++|+++.++.++++.......+..+
T Consensus 15 ~~~~~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~ 78 (332)
T 2wkq_A 15 TTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDA 78 (332)
T ss_dssp CCGGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHH
T ss_pred hHhhcCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHH
Confidence 467899999999999 9999999999999999999999999999999876655444444444
No 75
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.08 E-value=3.6e-06 Score=90.23 Aligned_cols=62 Identities=13% Similarity=0.157 Sum_probs=58.1
Q ss_pred HHHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHH
Q 005722 614 VRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSA 675 (681)
Q Consensus 614 ~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~a 675 (681)
..+++++.+.|+++|.+|+|+|+|+++++++||+++|++|+++.+++||+|++.+.+.+...
T Consensus 89 ~~~l~a~~~~i~v~~~~G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~D~~~~~~~l~~~ 150 (361)
T 4f3l_A 89 QLMLEALDGFFLAIMTDGSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILSTH 150 (361)
T ss_dssp HHHHHHTTEEEEEEETTSBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGGGHHHHHHHHHHC
T ss_pred HHHHHhcCceEEEEcCCccEEEEechhhhhcCCCHHHhcCCcHHHhcCHHHHHHHHHHhccC
Confidence 34789999999999999999999999999999999999999999999999999999888764
No 76
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=98.07 E-value=6.8e-06 Score=70.39 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=51.0
Q ss_pred HHHHHHHhcCccEEEEcC---CCceeeecHHhHHhcCCChhhhhcCc--ccccccCCCHHHHHHHHHHH
Q 005722 612 EMVRLIETAAVPILAVDA---SGNVNGWNSKAAELTGLTVDQAIGTA--LVDLVAGDSVDVVKNMLSSA 675 (681)
Q Consensus 612 el~~Lie~s~d~I~~vD~---~G~I~~~N~a~~~l~G~~~~EliGk~--l~~lv~~~~~~~~~~~l~~a 675 (681)
.+...+++++++|+++|. +|+|+++|+++++++|++.++++|++ +..+.+++........+..+
T Consensus 20 ~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 88 (138)
T 2l0w_A 20 TIIRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQA 88 (138)
T ss_dssp HHHHHHTTTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHH
Confidence 355677889999999999 99999999999999999999999999 45566665555444444443
No 77
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=98.02 E-value=7.2e-05 Score=86.68 Aligned_cols=140 Identities=12% Similarity=0.162 Sum_probs=101.0
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCC--CCcCCCcCCCCCchHHHHHHHHcCCeEEeecCC
Q 005722 214 GNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDL--EPYLGFHYPATDIPQASRFLIMKNKVRMICDCL 291 (681)
Q Consensus 214 ~~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l--~s~LGlhfPasDIP~qaR~Ly~~n~vR~I~Dv~ 291 (681)
.+++++++.+++.+++++|+||+.||-+++ |+.+..+...+. +...+..+|... .-+...+..++.-.|.|+.
T Consensus 195 ~dl~~ll~~i~~~~~~~l~ad~~~i~L~d~---~~l~~~~~~g~~~~~~~~~~~~~~~~--gi~g~v~~~g~~v~i~d~~ 269 (691)
T 3ibj_A 195 DDVSVLLQEIITEARNLSNAEICSVFLLDQ---NELVAKVFDGGVVDDESYEIRIPADQ--GIAGHVATTGQILNIPDAY 269 (691)
T ss_dssp SCTTTHHHHHHHHHHHHHTEEEEEEEEECS---SEEEEECCSSSCCSSCCCEEEEETTS--HHHHHHHHHCSCEEESCST
T ss_pred ccHHHHHHHHHHHHHHHhCCCeEEEEEEeC---CeEEEEeecCCcccccccceeccCCC--CHHHHHHHhCCEEEecCcc
Confidence 489999999999999999999999999998 777777765543 334456676653 3445677788888888887
Q ss_pred CCCceeecCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCceeEEEEeecCCCC-C
Q 005722 292 APPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPR-F 370 (681)
Q Consensus 292 ~~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~kLWGLi~cHh~spr-~ 370 (681)
..|- -+.........++++-|++||+.+ +|++||.|..+++.+. .
T Consensus 270 ~d~~----------------------~~~~~~~~~g~~~rS~L~vPL~~~------------~g~viGVL~l~~~~~~~~ 315 (691)
T 3ibj_A 270 AHPL----------------------FYRGVDDSTGFRTRNILCFPIKNE------------NQEVIGVAELVNKINGPW 315 (691)
T ss_dssp TSTT----------------------C------CCSCCCCCEEEEECCCS------------SSCCCEEEEEEEESSSSS
T ss_pred cCcc----------------------ccchhhcccCCeeeeEEEEeEECC------------CCCEEEEEEEEECCCCCC
Confidence 5431 011222233467899999999865 2699999999988754 6
Q ss_pred CChhHHHHHHHHHHHHHHHHHH
Q 005722 371 VPFPLRYACEFLIQVFGVQVNK 392 (681)
Q Consensus 371 v~~~~R~a~e~l~q~~s~ql~~ 392 (681)
++.+.....+.++..++..|..
T Consensus 316 f~~~d~~ll~~lA~~~aiAIen 337 (691)
T 3ibj_A 316 FSKFDEDLATAFSIYCGISIAH 337 (691)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 7777667777777777766654
No 78
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=98.01 E-value=4.8e-06 Score=83.54 Aligned_cols=53 Identities=9% Similarity=0.187 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCccEEEEcCCCceeeecHHhHHhc------------CCChhhhhcCcccccccC
Q 005722 610 TNEMVRLIETAAVPILAVDASGNVNGWNSKAAELT------------GLTVDQAIGTALVDLVAG 662 (681)
Q Consensus 610 ~~el~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~------------G~~~~EliGk~l~~lv~~ 662 (681)
..++..++++++++|+++|.+|+|+++|+++++++ ||+++|++|+++.++.+.
T Consensus 21 ~~~l~~iLd~~~~~vii~D~~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~~ 85 (233)
T 3vol_A 21 MARIKSALDNVSANVMIADNDLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN 85 (233)
T ss_dssp HHHHHHHHTTSSSEEEEEETTSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSSS
T ss_pred HHHHHHHHhcCCCcEEEECCCCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcCC
Confidence 35677899999999999999999999999999998 899999999999988753
No 79
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=97.94 E-value=3.8e-06 Score=72.35 Aligned_cols=59 Identities=7% Similarity=-0.035 Sum_probs=51.6
Q ss_pred cCccEEEEc-CCCceeeecHHhHHhcCCChhhhhcCc-ccccccCCCHHHHHHHHHHHHcc
Q 005722 620 AAVPILAVD-ASGNVNGWNSKAAELTGLTVDQAIGTA-LVDLVAGDSVDVVKNMLSSAFLA 678 (681)
Q Consensus 620 s~d~I~~vD-~~G~I~~~N~a~~~l~G~~~~EliGk~-l~~lv~~~~~~~~~~~l~~al~G 678 (681)
++++||.+| .+|+++++|+++++++||+++|++|.. +.+++||+|++.+...+..++.+
T Consensus 2 a~~giw~~d~~~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~ 62 (115)
T 3h9w_A 2 TKAIPWKINWQTMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSEC 62 (115)
T ss_dssp -CCEEEEEETTTTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHT
T ss_pred cceEEEEEEcCCCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhc
Confidence 578999999 789999999999999999999999953 56899999999999888887643
No 80
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=97.91 E-value=2.4e-06 Score=88.79 Aligned_cols=55 Identities=27% Similarity=0.488 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCC
Q 005722 610 TNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDS 664 (681)
Q Consensus 610 ~~el~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~ 664 (681)
.+.++.++++++++|+++|.+|+|++||+++++++||+++|++|+++.++.+.++
T Consensus 7 ~~~~~~i~~~~~~~i~~~d~~g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~~~ 61 (349)
T 3a0r_A 7 RNFSESILESLETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEE 61 (349)
T ss_dssp --CCCSSGGGSSSEEEEEESSSBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTTTH
T ss_pred HHHHHHHHhhhcCeEEEECCCCCEEeeHHHHHHHhCCCHHHHcCcCHHHCcChhH
Confidence 3446679999999999999999999999999999999999999999998854443
No 81
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=97.90 E-value=1.2e-05 Score=87.20 Aligned_cols=60 Identities=20% Similarity=0.276 Sum_probs=55.3
Q ss_pred HHHHhcCccEEEEcCC-CceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHH
Q 005722 615 RLIETAAVPILAVDAS-GNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSS 674 (681)
Q Consensus 615 ~Lie~s~d~I~~vD~~-G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~ 674 (681)
.+++++.+.|++++.+ |+|+|+|++++.++||+++|++|+++.+++||+|++.+.+.|..
T Consensus 90 ~ll~~~~gfi~v~~~~~G~i~yvs~~~~~~lG~~~~el~g~~~~~~ihp~D~~~~~~~L~~ 150 (387)
T 4f3l_B 90 LILRAADGFLFVVGCDRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVKEQLSS 150 (387)
T ss_dssp HHHHTCCSEEEEEETTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHSC
T ss_pred HHHhcCCCEEEEEecCCeEEEEEchhhHHHcCCCHHHHCCCcHHHhcCCCCHHHHHHHhcc
Confidence 4788888899999987 99999999999999999999999999999999999999887753
No 82
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus}
Probab=97.89 E-value=0.00021 Score=68.20 Aligned_cols=150 Identities=10% Similarity=0.115 Sum_probs=99.2
Q ss_pred HHHHHHHHHhcCCCC-CHHHHHHHHHHHHHHhhCCCEEEEEEecCCCC-eEEEEeec--CCC--C-----CCcCCCcCCC
Q 005722 200 LAAKAISRLQSLPSG-NISLLCDVLVNEVSDLTGYDRVMVYKFHEDEH-GEVVAECR--RPD--L-----EPYLGFHYPA 268 (681)
Q Consensus 200 l~~~~i~rl~~~~~~-~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~-GeVVAEs~--~~~--l-----~s~LGlhfPa 268 (681)
.+.++...|.+ .. +++++++.+++.+++++|+||..||-++++.. ++.++... ..+ + .+..+.++|.
T Consensus 8 ~L~eis~~l~~--~~~dl~~ll~~il~~~~~~~~a~~~~i~L~d~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 85 (180)
T 3dba_A 8 ILFELLTEIQD--EAGSMEKIVHKTLQRLSQLLAADRCSMFICRSRNGIPEVATRLLNVTPTSKFEDNLVNPDKETVFPL 85 (180)
T ss_dssp HHHHHHTTSCS--SSSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEETTEEEEEEEEEEECTTCCHHHHBCCGGGCCEECT
T ss_pred HHHHHHHHHHH--hhhcHHHHHHHHHHHHHHHhCcceEEEEEEeCCCCcceeeeeeeccccCccchhhccccccceeeeC
Confidence 34445555555 56 89999999999999999999999999998764 57765432 122 2 2334556765
Q ss_pred CCchHHHHHHHHcCCeEEeecCCCCCceeecCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCcccccc
Q 005722 269 TDIPQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELD 348 (681)
Q Consensus 269 sDIP~qaR~Ly~~n~vR~I~Dv~~~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~ 348 (681)
.. --+..-+..++.-.|.|+...|- ..+ ........++++-|++||+.+
T Consensus 86 ~~--gi~g~v~~tg~~v~i~d~~~d~~---------------------f~~-~~~~~~~~~~~S~L~vPl~~~------- 134 (180)
T 3dba_A 86 DI--GIAGWVAHTKKFFNIPDVKKNNH---------------------FSD-YLDKKTGYTTVNMMAIPITQG------- 134 (180)
T ss_dssp TS--SHHHHHHHHTCCEEESCGGGCTT---------------------CCC-HHHHHHCCCCCCEEEEEEEET-------
T ss_pred CC--CHHHHHHHhCCEEEecCCCCCcc---------------------cCh-hhccccCccccEEEEEEeccC-------
Confidence 42 23456667777778888874320 011 112234567899999999976
Q ss_pred ccccccCceeEEEEeecCCCC-CCChhHHHHHHHHHHHHHH
Q 005722 349 NDQEQGRKLWGLVVCHHTSPR-FVPFPLRYACEFLIQVFGV 388 (681)
Q Consensus 349 ~~~~~~~kLWGLi~cHh~spr-~v~~~~R~a~e~l~q~~s~ 388 (681)
|++-|.|...+..+. ..+.+.....+.|+..++.
T Consensus 135 ------~~viGVL~l~n~~~~~~Ft~~d~~lL~~lA~~aa~ 169 (180)
T 3dba_A 135 ------KEVLAVVMALNKLNASEFSKEDEEVFKKYLNFISL 169 (180)
T ss_dssp ------TEEEEEEEEEEESSSSSCCHHHHHHHHHHHHHHHH
T ss_pred ------CEEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 899999999887653 5555444444444444443
No 83
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=97.87 E-value=1.9e-06 Score=102.88 Aligned_cols=153 Identities=10% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeE--EEEee--cCCCC--C--CcCCCcCCCCCc
Q 005722 200 LAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGE--VVAEC--RRPDL--E--PYLGFHYPATDI 271 (681)
Q Consensus 200 l~~~~i~rl~~~~~~~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~Ge--VVAEs--~~~~l--~--s~LGlhfPasDI 271 (681)
.+.++...|.+ +.+++++++.+++.+++++|+||+.||.++++..|. .++.. ...+. + +..+..||...
T Consensus 154 ~L~eis~~L~~--~ldl~~ll~~il~~l~~~l~ad~~~I~L~d~~~~~~~~lv~~~f~~~~G~~~~~~~~~~~~~p~~~- 230 (878)
T 3bjc_A 154 RLLELVKDISS--HLDVTALCHKIFLHIHGLISADRYSLFLVCEDSSNDKFLISRLFDVAEGSTLEEVSNNCIRLEWNK- 230 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhh--cCCHHHHHHHHHHHHHHHhCCCeEEEEEEeCCCCCceeEEeeecccccCccccccCCcceeeeCCc-
Confidence 34455566666 569999999999999999999999999999987653 33210 11111 1 24455555431
Q ss_pred hHHHHHHHHcCCeEEeecCCCCCceeecCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEe-cCcccccccc
Q 005722 272 PQASRFLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTI-NEAEDELDND 350 (681)
Q Consensus 272 P~qaR~Ly~~n~vR~I~Dv~~~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv-~~~~~~~~~~ 350 (681)
.-+...+..++.-.|.|+...|- -..........++++.|.+||+. +
T Consensus 231 -gi~g~v~~~g~pv~I~D~~~dp~----------------------f~~~~~~~~~~~~~S~L~vPL~~~~--------- 278 (878)
T 3bjc_A 231 -GIVGHVAALGEPLNIKDAYEDPR----------------------FNAEVDQITGYKTQSILCMPIKNHR--------- 278 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -cHHHHHHhcCceEEeCCcccCcc----------------------cccccccccCCccceEEEEeeEcCC---------
Confidence 12233444555555666553210 01111223345689999999997 5
Q ss_pred ccccCceeEEEEeecCCCC---CCChhHHHHHHHHHHHHHHHHH
Q 005722 351 QEQGRKLWGLVVCHHTSPR---FVPFPLRYACEFLIQVFGVQVN 391 (681)
Q Consensus 351 ~~~~~kLWGLi~cHh~spr---~v~~~~R~a~e~l~q~~s~ql~ 391 (681)
|++||.|.++++.+. .++.+.....+.++..++..|.
T Consensus 279 ----g~viGvL~l~~~~~~~~~~ft~~D~~lL~~lA~~~a~AL~ 318 (878)
T 3bjc_A 279 ----EEVVGVAQAINKKSGNGGTFTEKDEKDFAAYLAFCGIVLH 318 (878)
T ss_dssp --------------------------------------------
T ss_pred ----CCEEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999998754 6776666666666666665554
No 84
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=97.78 E-value=1.9e-05 Score=85.04 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHHHcc
Q 005722 611 NEMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFLA 678 (681)
Q Consensus 611 ~el~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~al~G 678 (681)
+.+..++++.+++|+++|.+|+|++||++ +++| ++.++++|+++.+++++...+.+..++.....|
T Consensus 239 ~~l~~IL~~l~dgIivvD~~g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~~~~~~~~l~~~l~~g 304 (369)
T 3cax_A 239 EELKAIFEALPVDVTFIDKDDRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPKSVYVVNKILKAFKEG 304 (369)
T ss_dssp HHHHHHHHHSSSEEEEECTTSBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcEEEECCCCcEEEEcCH-HHcc-CChHHHcCCcHHHHCChhhHHHHHHHHHHHHcC
Confidence 35778999999999999999999999999 9999 999999999999998877666555555444333
No 85
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0
Probab=97.74 E-value=0.0012 Score=63.43 Aligned_cols=142 Identities=12% Similarity=0.052 Sum_probs=93.9
Q ss_pred HHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCCCCcCCCcCCCCCchHHHH
Q 005722 198 YKLAAKAISRL-QSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASR 276 (681)
Q Consensus 198 ~~l~~~~i~rl-~~~~~~~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LGlhfPasDIP~qaR 276 (681)
|..+..-++++ .. ..++.+.++.++..+++.+++||+.+|-+|++++--++.-... .. -..+||-.. --+-
T Consensus 15 ~~~ll~~i~~ll~~--~~dl~~~L~~v~~~l~~~l~~~~~~iyL~d~~~~~L~l~a~~G--~~--~~~~i~~ge--Gi~G 86 (167)
T 3mmh_A 15 YREVLPQIESVVAD--ETDWVANLANTAAVLKEAFGWFWVGFYLVDTRSDELVLAPFQG--PL--ACTRIPFGR--GVCG 86 (167)
T ss_dssp HHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHHHCCSEEEEEEEETTTTEEEEEEEES--SC--CCSEEETTS--HHHH
T ss_pred HHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHcCCcEEEEEEEECCCCEEEEEEecc--cc--cceEeccCC--ChHH
Confidence 33333344444 44 5699999999999999999999999999998765444433221 11 123454432 2344
Q ss_pred HHHHcCCeEEeecCCCCCceeecCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCc
Q 005722 277 FLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRK 356 (681)
Q Consensus 277 ~Ly~~n~vR~I~Dv~~~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~k 356 (681)
.-+..++.-+|+|+...|-- + +| ..+++|-+++||+.+ |+
T Consensus 87 ~v~~~g~~~~v~Dv~~~p~~----------~-----------~~------~~~~~S~i~vPi~~~-------------g~ 126 (167)
T 3mmh_A 87 QAWAKGGTVVVGDVDAHPDH----------I-----------AC------SSLSRSEIVVPLFSD-------------GR 126 (167)
T ss_dssp HHHHHTSCEEESCGGGSTTC----------C-----------CS------STTCCEEEEEEEEET-------------TE
T ss_pred HHHhCCcEEEECCcccCcch----------h-----------hc------CccCCeEEEEEeccC-------------CE
Confidence 55677888888998854310 0 11 136889999999986 89
Q ss_pred eeEEEEeecCCCCCCChhHHHHHHHHHHHHH
Q 005722 357 LWGLVVCHHTSPRFVPFPLRYACEFLIQVFG 387 (681)
Q Consensus 357 LWGLi~cHh~spr~v~~~~R~a~e~l~q~~s 387 (681)
++|.|.+.+..++..+.+.....+.++..++
T Consensus 127 viGVL~i~s~~~~~F~~~d~~~L~~lA~~la 157 (167)
T 3mmh_A 127 CIGVLDADSEHLAQFDETDALYLGELAKILE 157 (167)
T ss_dssp EEEEEEEEESSTTCCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999998887776655444444444433
No 86
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=97.72 E-value=1.8e-05 Score=85.69 Aligned_cols=59 Identities=8% Similarity=0.098 Sum_probs=55.2
Q ss_pred hcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHHHc
Q 005722 619 TAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFL 677 (681)
Q Consensus 619 ~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~al~ 677 (681)
.+.+-|+..|.+|+|+|+|+++++++||+++|++|+++.+++||+|++.+...+..+++
T Consensus 276 ~~~~fi~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~ 334 (387)
T 4f3l_B 276 KSMEYVSRHAIDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQ 334 (387)
T ss_dssp CCCEEEEEECTTSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTT
T ss_pred CCceEEEEECCCCEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHh
Confidence 46678999999999999999999999999999999999999999999999999988874
No 87
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=97.68 E-value=3.2e-05 Score=82.66 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=53.1
Q ss_pred CccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHHHc
Q 005722 621 AVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFL 677 (681)
Q Consensus 621 ~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~al~ 677 (681)
.+.|+..|.+|+|+|+|++++.++||.++|++|+++.+++||+|++.+...+..+++
T Consensus 154 ~~fi~r~~~dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~ 210 (339)
T 3rty_A 154 PKFAIRHTATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMK 210 (339)
T ss_dssp CEEEEEEETTCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999888888763
No 88
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=97.67 E-value=3.5e-05 Score=81.68 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=52.6
Q ss_pred ccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHHHc
Q 005722 622 VPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFL 677 (681)
Q Consensus 622 d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~al~ 677 (681)
+-|...|.+|+|+|+|+++.+++||.++|++|+++.+++|++|++.+.+.+..+++
T Consensus 175 ~Fitrh~~dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~ 230 (317)
T 4dj3_A 175 IFTTTHTPGCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLK 230 (317)
T ss_dssp EEEEEECTTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHH
T ss_pred ceEEEecCCCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999888875
No 89
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=97.67 E-value=7.1e-05 Score=60.85 Aligned_cols=46 Identities=15% Similarity=0.028 Sum_probs=37.4
Q ss_pred ccEEEEcC---CCceeeecHHhHHhcCCChhhhhcCc--ccccccCCCHHH
Q 005722 622 VPILAVDA---SGNVNGWNSKAAELTGLTVDQAIGTA--LVDLVAGDSVDV 667 (681)
Q Consensus 622 d~I~~vD~---~G~I~~~N~a~~~l~G~~~~EliGk~--l~~lv~~~~~~~ 667 (681)
++|+++|. +|+|+++|+++++++||+++|++|++ +..+.+++....
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~ 52 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRR 52 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHH
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHH
Confidence 58999997 59999999999999999999999999 344444444433
No 90
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=97.64 E-value=4.1e-05 Score=81.24 Aligned_cols=58 Identities=10% Similarity=0.111 Sum_probs=54.1
Q ss_pred cCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHHHc
Q 005722 620 AAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFL 677 (681)
Q Consensus 620 s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~al~ 677 (681)
..+-+...|.||+|+|+|+++++++||.++|++|+++.+++|++|++.+.+.+..+++
T Consensus 175 ~~~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~ 232 (320)
T 4dj2_A 175 KRIFTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQ 232 (320)
T ss_dssp GCEEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTT
T ss_pred CceEEEEecCCceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHh
Confidence 4567888999999999999999999999999999999999999999999999998876
No 91
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=97.62 E-value=4.4e-05 Score=80.56 Aligned_cols=56 Identities=9% Similarity=0.056 Sum_probs=52.5
Q ss_pred ccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHHHc
Q 005722 622 VPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFL 677 (681)
Q Consensus 622 d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~al~ 677 (681)
.-|...|.||+|+|+|+++.+++||.++|++|+++.+++|++|++.+.+.+..+++
T Consensus 166 ~Fitrh~~dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~ 221 (309)
T 3gdi_A 166 IFTTTHTPNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQ 221 (309)
T ss_dssp EEEEEECTTCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHH
T ss_pred eEEEEecCCCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHh
Confidence 56778899999999999999999999999999999999999999999998888875
No 92
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=97.54 E-value=4.1e-05 Score=81.99 Aligned_cols=58 Identities=10% Similarity=-0.004 Sum_probs=53.2
Q ss_pred cCccEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHHHc
Q 005722 620 AAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSAFL 677 (681)
Q Consensus 620 s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~al~ 677 (681)
..+.++..|.+|+|+|+|+++++++||+++|++|+++.+++||+|++.+...+..++.
T Consensus 250 ~~~f~~~~~~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~ 307 (361)
T 4f3l_A 250 NEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQ 307 (361)
T ss_dssp CCEEEEEECTTSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEcCCceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHh
Confidence 4567888999999999999999999999999999999999999999999888887763
No 93
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=97.47 E-value=5.1e-05 Score=80.50 Aligned_cols=68 Identities=24% Similarity=0.210 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHhcCccEEEEcCC-CceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHH
Q 005722 604 DELRIITNEMVRLIETAAVPILAVDAS-GNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLS 673 (681)
Q Consensus 604 ~el~~~~~el~~Lie~s~d~I~~vD~~-G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~ 673 (681)
+||+++..| .++++...=++++..+ |+|+|+|+.++.++||+++|++|+++.|++|++|++.+.+.|.
T Consensus 21 eel~~l~~e--~lLqaldGF~~vvs~~~G~i~yvS~sv~~~Lg~~~~~l~g~s~~d~iHp~D~~~f~~qL~ 89 (320)
T 4dj2_A 21 EELEHITSE--YTLRNQDTFSVAVSFLTGRIVYISEQAGVLLRCKRDVFRGARFSELLAPQDVGVFYGSTT 89 (320)
T ss_dssp HHHHHHHHH--HTTSCSSEEEEEEETTTCBEEEECTHHHHHHTSCSTTTTTSBGGGGBCHHHHHHHHHHCC
T ss_pred HHHHHHHHH--HHHhccCCEEEEEECCCceEEEECcHHHHHhCcCHHHHcCCcHHHhcCHHHHHHHHHhhc
Confidence 555555433 3577777777888875 9999999999999999999999999999999999998887654
No 94
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=97.41 E-value=4.2e-05 Score=81.01 Aligned_cols=57 Identities=14% Similarity=0.034 Sum_probs=52.4
Q ss_pred HHHhcCccEEEEcCC-CceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHH
Q 005722 616 LIETAAVPILAVDAS-GNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNML 672 (681)
Q Consensus 616 Lie~s~d~I~~vD~~-G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l 672 (681)
+++++..=+++++.+ |+|+|+|..++.++||+++|++|+++.|++|++|++.+.+.+
T Consensus 31 ~L~aldgF~~vvs~~~G~i~yvS~~~~~~Lg~~~~el~g~s~~d~ihp~D~~~f~~ql 88 (317)
T 4dj3_A 31 TSKNTDTFAAVFSFLSGRLVHISEQAALILNSKRGFLKSVHFVDLLAPQDVRAFYAHT 88 (317)
T ss_dssp HTSCTTEEEEEEETTTCBEEEECTTHHHHTTCCHHHHHTSBGGGGBCGGGHHHHHHHT
T ss_pred HHhccCCEEEEEEcCCcEEEEECCHHHHHcCCCHHHHcCCchhhhcChhhHHHHHHhh
Confidence 677777788889986 999999999999999999999999999999999999887765
No 95
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=97.39 E-value=7.3e-05 Score=78.88 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=43.5
Q ss_pred HHHhcCccEEEEcCC-CceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHH
Q 005722 616 LIETAAVPILAVDAS-GNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNML 672 (681)
Q Consensus 616 Lie~s~d~I~~vD~~-G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l 672 (681)
+++++..-+++++.+ |+|+|+|+.++.++||+++|++|+++.+++|++|++.+.+.+
T Consensus 20 ll~a~dgF~~vvs~~~G~i~yvS~s~~~~Lg~~~~el~g~s~~d~iHp~D~~~~~~~L 77 (309)
T 3gdi_A 20 IVKNADMFAVAVSLVSGKILYISNQVASIFHCKKDAFSDAKFVEFLAPHDVSVFHSYT 77 (309)
T ss_dssp ---CTTEEEEEECTTTCBEEEECTTTTTTC-------CCSBGGGGBCTTTHHHHHHHT
T ss_pred HHHhcCCEEEEEECCCceEEEECCHHHHHcCCCHHHHcCCchhhccCHhHHHHHHHhc
Confidence 667777788899986 999999999999999999999999999999999999888766
No 96
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1
Probab=97.30 E-value=0.015 Score=57.13 Aligned_cols=140 Identities=10% Similarity=0.058 Sum_probs=91.7
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhh-CCCEEEEEEecCCCCeEEEEeecCCCCCCcCCCcCCCCCchHHHHHH
Q 005722 200 LAAKAISRLQSLPSGNISLLCDVLVNEVSDLT-GYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFL 278 (681)
Q Consensus 200 l~~~~i~rl~~~~~~~l~~l~~~~v~evr~lt-g~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LGlhfPasDIP~qaR~L 278 (681)
++.++-.-+.. ..++.++++.+++.+++.+ +++++.+|-+++ |+.+..+.. +... ..+||-.. --+-.-
T Consensus 30 ll~~l~~ll~~--~~dl~~~L~~v~~ll~~~l~~~~~~~iyL~d~---~~L~l~~~~-G~~~--~~~i~~Ge--Gi~G~a 99 (195)
T 1vhm_A 30 LNRDFNALMAG--ETSFLATLANTSALLYERLTDINWAGFYLLED---DTLVLGPFQ-GKIA--CVRIPVGR--GVCGTA 99 (195)
T ss_dssp HHHHHHHHHTT--CCCHHHHHHHHHHHHHHHSSSCSEEEEEEEET---TEEEEEEEE-ESCC--CSEEETTS--HHHHHH
T ss_pred HHHHHHHHHhc--CCcHHHHHHHHHHHHHHhCCCCCEEEEEEEEC---CEEEEEEec-Cccc--ceEecCCC--ChHHHH
Confidence 33343344444 4699999999999999999 999999999986 344332211 1111 34555443 124455
Q ss_pred HHcCCeEEeecCCCCCceeecCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCcee
Q 005722 279 IMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLW 358 (681)
Q Consensus 279 y~~n~vR~I~Dv~~~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~kLW 358 (681)
+..++.-.|+|+...|-- +. | ..+++|-+++||+.+ |++.
T Consensus 100 a~tg~~i~V~Dv~~~p~~----------~~-----------~------~~~~~S~l~VPI~~~-------------g~vi 139 (195)
T 1vhm_A 100 VARNQVQRIEDVHVFDGH----------IA-----------C------DAASNSEIVLPLVVK-------------NQII 139 (195)
T ss_dssp HHHTSCEEESCTTTCTTC----------CC-----------S------CCCCSEEEEEEEEET-------------TEEE
T ss_pred HhcCCEEEECCcccCcch----------hh-----------c------CCCccEEEEEeEeEC-------------CEEE
Confidence 667788889999864310 10 0 115799999999976 8999
Q ss_pred EEEEeecCCCCCCChhHHHHHHHHHHHHHHH
Q 005722 359 GLVVCHHTSPRFVPFPLRYACEFLIQVFGVQ 389 (681)
Q Consensus 359 GLi~cHh~spr~v~~~~R~a~e~l~q~~s~q 389 (681)
|.|......++..+.+.....+.++..++..
T Consensus 140 GVL~i~s~~~~~F~e~d~~~L~~lA~~ia~a 170 (195)
T 1vhm_A 140 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKV 170 (195)
T ss_dssp EEEEEEESSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999998887766665555555555444433
No 97
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=97.22 E-value=0.00015 Score=77.37 Aligned_cols=52 Identities=13% Similarity=0.202 Sum_probs=47.2
Q ss_pred EEEEc-CCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHHHH
Q 005722 624 ILAVD-ASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLSSA 675 (681)
Q Consensus 624 I~~vD-~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~~a 675 (681)
+++++ .+|+|+|+|+.++.++||+++|++|+++.+++|++|++.+...+...
T Consensus 6 ~~vv~~~~G~i~yvS~~~~~~LGy~~~el~G~s~~d~ihp~D~~~f~~~L~~g 58 (339)
T 3rty_A 6 CCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTG 58 (339)
T ss_dssp EEEEETTTCBEEEECTTHHHHHCCCTTSSTTSBGGGGBCHHHHHHHHHHHHTT
T ss_pred EEEEECCCcEEEEEChHHHHHcCCCHHHHCCCcHHHhcCHHHHHHHHHHHhcC
Confidence 57788 79999999999999999999999999999999999999877776543
No 98
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A*
Probab=97.05 E-value=0.01 Score=57.32 Aligned_cols=130 Identities=8% Similarity=-0.003 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHHHHHhh-----CCCEEEEEEecCCCCeEEEEeecCCCCCCcCCCcCCCCCchHHHHHHHHcCCeEEe
Q 005722 213 SGNISLLCDVLVNEVSDLT-----GYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMI 287 (681)
Q Consensus 213 ~~~l~~l~~~~v~evr~lt-----g~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LGlhfPasDIP~qaR~Ly~~n~vR~I 287 (681)
..++..+++.+++.+.+.+ +++++.+|-++++..++.+.-....... ..+||...= -+-.-...++.-+|
T Consensus 39 ~~dl~~~L~~v~~~l~~~l~~~~~~~~~~~~yl~d~~~~~~L~l~~~~g~~~---~~~i~~g~G--i~G~aa~~g~~v~v 113 (180)
T 1f5m_A 39 QVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEENTLILGPFQGKVA---CQMIQFGKG--VCGTAASTKETQIV 113 (180)
T ss_dssp CCBHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEECSSSSCEEEEEEEEESCC---CSEEETTSH--HHHHHHHHTSCEEE
T ss_pred CccHHHHHHHHHHHHHHHHhhccCCccEEEEEEEecCCCCeEEEeecCCCcc---ceeecCCCc--chhhhhhcCCEEEe
Confidence 4589999999999999998 9999999999987645555422111111 345555432 23344556677788
Q ss_pred ecCCCCCceeecCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEe-cCccccccccccccCceeEEEEeecC
Q 005722 288 CDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTI-NEAEDELDNDQEQGRKLWGLVVCHHT 366 (681)
Q Consensus 288 ~Dv~~~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv-~~~~~~~~~~~~~~~kLWGLi~cHh~ 366 (681)
+|+...|--+ .| ..+++|.+++||+. + |++.|.|.+++.
T Consensus 114 ~Dv~~dp~~~---------------------~~------~~~~~S~l~vPi~~~~-------------g~viGVL~l~s~ 153 (180)
T 1f5m_A 114 PDVNKYPGHI---------------------AC------DGETKSEIVVPIISND-------------GKTLGVIDIDCL 153 (180)
T ss_dssp SCGGGSTTCC---------------------CS------STTCCEEEEEEEECTT-------------SCEEEEEEEEES
T ss_pred CCcccCcccc---------------------cc------CcccceEEEEEEEcCC-------------CeEEEEEEeccC
Confidence 8987543110 01 13789999999997 5 899999999988
Q ss_pred CCCCCChhHHHHHHHHHHHHH
Q 005722 367 SPRFVPFPLRYACEFLIQVFG 387 (681)
Q Consensus 367 spr~v~~~~R~a~e~l~q~~s 387 (681)
.++....+.....+.++..++
T Consensus 154 ~~~~F~~~d~~~L~~la~~~a 174 (180)
T 1f5m_A 154 DYEGFDHVDKEFLEKLAKLIN 174 (180)
T ss_dssp STTCCCHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHH
Confidence 887766655555555554443
No 99
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A*
Probab=96.90 E-value=0.027 Score=53.75 Aligned_cols=127 Identities=10% Similarity=0.142 Sum_probs=86.9
Q ss_pred CCCHHHHHHHHHHHHHHhhC-CCEEEEEEecCCCCeEEEEeecCCCCCCcCCCcCCCCCchHHHHHHHHcCCeEEeecCC
Q 005722 213 SGNISLLCDVLVNEVSDLTG-YDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCL 291 (681)
Q Consensus 213 ~~~l~~l~~~~v~evr~ltg-~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LGlhfPasDIP~qaR~Ly~~n~vR~I~Dv~ 291 (681)
..|+...++.++..+++.++ +|++.+|-+++ ++.+-.+-.. .+. -.+||-.. --.-.-+..++.-.|+|+.
T Consensus 29 ~~dl~~~L~~v~~ll~~~l~~~~~~gfYL~~~---~~L~l~~~~G-~~a--~~ri~~Ge--Gv~G~aa~~~~~i~V~Dv~ 100 (160)
T 3ksh_A 29 EHHMIAILSNMSALLNDNLDQINWVGFYLLEQ---NELILGPFQG-HPA--CVHIPIGK--GVCGTAVSERRTQVVADVH 100 (160)
T ss_dssp CCCHHHHHHHHHHHHHHHCSSCSEEEEEEEET---TEEEEEEEEE-SCC--CSEEETTS--HHHHHHHHHTSCEEESCGG
T ss_pred CCCHHHHHHHHHHHHHHHcccCCEEEEEEEEC---CEEEEEeccC-Ccc--cEEeeCCC--CHHHHHHhhCCEEEECCcc
Confidence 46899999999999999997 99999999974 3555433221 111 12444332 2345567778888999998
Q ss_pred CCCceeecCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCceeEEEEeecCCCCCC
Q 005722 292 APPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFV 371 (681)
Q Consensus 292 ~~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~kLWGLi~cHh~spr~v 371 (681)
..|--+ .| ..+++|-+++||+.+ |+++|.|...+..++..
T Consensus 101 ~~p~~i---------------------~~------~~~~~Sei~VPI~~~-------------g~viGVL~i~s~~~~~F 140 (160)
T 3ksh_A 101 QFKGHI---------------------AC------DANSKSEIVVPIFKD-------------DKIIGVLDIDAPITDRF 140 (160)
T ss_dssp GSTTCC---------------------GG------GTTCSEEEEEEEEET-------------TEEEEEEEEEESSSSCC
T ss_pred cCcccc---------------------cc------CcccCceEEEEEEEC-------------CEEEEEEEEecCCCCCC
Confidence 543100 11 135789999999987 89999999998888777
Q ss_pred ChhHHHHHHHHHHHHH
Q 005722 372 PFPLRYACEFLIQVFG 387 (681)
Q Consensus 372 ~~~~R~a~e~l~q~~s 387 (681)
+.+.....+.++..++
T Consensus 141 ~e~D~~~L~~lA~~la 156 (160)
T 3ksh_A 141 DDNDKEHLEAIVKIIE 156 (160)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6655555555544443
No 100
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=95.70 E-value=0.00028 Score=74.08 Aligned_cols=48 Identities=23% Similarity=0.168 Sum_probs=42.1
Q ss_pred HHHHhcCccEEEEcCCCceeeecHHhHHhcC---CChhhhhcCcccccccCC
Q 005722 615 RLIETAAVPILAVDASGNVNGWNSKAAELTG---LTVDQAIGTALVDLVAGD 663 (681)
Q Consensus 615 ~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G---~~~~EliGk~l~~lv~~~ 663 (681)
.++++.+|||+++|.+|+|+++|++++++|| ++ ++++|+++.+++++.
T Consensus 174 ~~~~~~~dGIivvD~~G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~~ 224 (305)
T 2ykf_A 174 RSSPRAGDGFIRLDVDGVVSYASPNALSAYHRMGLT-TELEGVNLIDATRPL 224 (305)
Confidence 3566999999999999999999999999985 54 799999999988654
No 101
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae}
Probab=96.63 E-value=0.11 Score=50.05 Aligned_cols=140 Identities=12% Similarity=0.027 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhC-CCEEEEEEecCCCCeEEEEeecCCCCCCcCCCcCCCCCchHHHH
Q 005722 198 YKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTG-YDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASR 276 (681)
Q Consensus 198 ~~l~~~~i~rl~~~~~~~l~~l~~~~v~evr~ltg-~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LGlhfPasDIP~qaR 276 (681)
|..+..-+.+|-+ ...|+.+.++.++..+++.++ +|++.+|-+++ ++.+-.+-. +.+. ..+||-.. --.-
T Consensus 16 ~~~ll~~l~~ll~-~~~dl~~~L~nv~~lL~~~l~~~~~~gfYL~~~---~~L~l~a~~-G~~a--~~ri~~Ge--Gv~G 86 (171)
T 3rfb_A 16 YQMLNEELSFLLE-GETNVLANLSNASALIKSRFPNTVFAGFYLFDG---KELVLGPFQ-GGVS--CIRIALGK--GVCG 86 (171)
T ss_dssp HHHHHHHHHHHHT-TCCBHHHHHHHHHHHHHHHCTTEEEEEEEEECS---SEEEEEEEE-SSSC--CCEEETTS--HHHH
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHccCCCEEEEEEEEC---CEEEEEecc-CCcc--ceEeeCCc--CHHH
Confidence 4433333444432 146899999999999999997 99999999974 455543321 1111 12343322 2345
Q ss_pred HHHHcCCeEEeecCCCCCceeecCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCc
Q 005722 277 FLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRK 356 (681)
Q Consensus 277 ~Ly~~n~vR~I~Dv~~~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~k 356 (681)
.-+..++.-+|+|+...|--+ . | .-+++|-+++||+.+ |+
T Consensus 87 ~va~tg~~i~V~Dv~~~p~~i----------~-----------~------~~~~~Sei~VPI~~~-------------g~ 126 (171)
T 3rfb_A 87 EAAHFQETVIVGDVTTYLNYI----------S-----------C------DSLAKSEIVVPMMKN-------------GQ 126 (171)
T ss_dssp HHHHTTSCEEESCTTSCSSCC----------C-----------S------CTTCCEEEEEEEEET-------------TE
T ss_pred HHHhhCCEEEECCcccCcccc----------c-----------c------CcccCceEEEEEEEC-------------CE
Confidence 667788889999998654211 0 0 124688899999987 89
Q ss_pred eeEEEEeecCCCCCCChhHHHHHHHHHHHH
Q 005722 357 LWGLVVCHHTSPRFVPFPLRYACEFLIQVF 386 (681)
Q Consensus 357 LWGLi~cHh~spr~v~~~~R~a~e~l~q~~ 386 (681)
++|.|...+..++..+.+.....+.++..+
T Consensus 127 viGVL~i~s~~~~~F~e~D~~~L~~lA~~l 156 (171)
T 3rfb_A 127 LLGVLDLDSSEIEDYDAMDRDYLEQFVAIL 156 (171)
T ss_dssp EEEEEEEEESSTTCCCHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCCCCCHHHHHHHHHHHHHH
Confidence 999999998887776655444444444433
No 102
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A*
Probab=95.17 E-value=0.0034 Score=74.82 Aligned_cols=141 Identities=7% Similarity=0.006 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCC---------CCCcCCCcCCCCCchHHHHHHHHcCCe
Q 005722 214 GNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPD---------LEPYLGFHYPATDIPQASRFLIMKNKV 284 (681)
Q Consensus 214 ~~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~---------l~s~LGlhfPasDIP~qaR~Ly~~n~v 284 (681)
.+++++++.+++.+++++|+||+.||-+++++ ++.++.+.... ..+.-+.++|... .-+...+..+..
T Consensus 348 ~dl~~ll~~I~~~a~~ll~a~~~~V~L~d~~~-~~l~a~a~~~~s~~~~~~~~~~~~~~~~~p~~~--gi~g~v~~~g~~ 424 (878)
T 3bjc_A 348 QSLEVILKKIAATIISFMQVQKCTIFIVDEDC-SDSFSSVFHMECEELEKSSDTLTREHDANKINY--MYAQYVKNTMEP 424 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccHHHHHHHHHHHHHHHhCcceeEEEEEcCcc-cchhHHHhhccccccccccccccccccccchhh--hHHHHHhhcCCe
Confidence 48999999999999999999999999999864 34555433211 0111133444321 112223344444
Q ss_pred EEeecCCCCCceeecCCCCCCCcccccccccCCChHHHHHHHh---cCCeeEEEEEEEecCcccccccccccc-CceeEE
Q 005722 285 RMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMEN---MGSIASLVMSVTINEAEDELDNDQEQG-RKLWGL 360 (681)
Q Consensus 285 R~I~Dv~~~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~N---MGV~ASlsvsIiv~~~~~~~~~~~~~~-~kLWGL 360 (681)
..|.|+...|- . +.+...... .++++-|++||+.+ + |+++|.
T Consensus 425 v~i~D~~~d~r-----------~-----------~~~~~~~~g~~~~~~rS~L~vPL~~~------------~~g~viGV 470 (878)
T 3bjc_A 425 LNIPDVSKDKR-----------F-----------PWTTENTGNVNQQCIRSLLCTPIKNG------------KKNKVIGV 470 (878)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeecCcccccc-----------c-----------ccccccccCccccccceEEEEEEecC------------CCCcEEEE
Confidence 45555543220 0 111111222 56899999999964 2 699999
Q ss_pred EEeecCCC------CCCChhHHHHHHHHHHHHHHHHH
Q 005722 361 VVCHHTSP------RFVPFPLRYACEFLIQVFGVQVN 391 (681)
Q Consensus 361 i~cHh~sp------r~v~~~~R~a~e~l~q~~s~ql~ 391 (681)
|...+..+ +.++.+.....+.++..++..|.
T Consensus 471 L~l~~~~~~~~G~~~~Ft~~d~~lL~~lA~~aaiAIe 507 (878)
T 3bjc_A 471 CQLVNKMEENTGKVKPFNRNDEQFLEAFVIFCGLGIQ 507 (878)
T ss_dssp -------------------------------------
T ss_pred EEEEEcCCCcccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99988765 67766665666666666665554
No 103
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=94.05 E-value=0.029 Score=51.92 Aligned_cols=54 Identities=4% Similarity=0.148 Sum_probs=45.9
Q ss_pred ccEEEEcCCCceeeecHHhHHhcCCCh--hhhhcCcccccccCCCHH--HHHHHHHHHH
Q 005722 622 VPILAVDASGNVNGWNSKAAELTGLTV--DQAIGTALVDLVAGDSVD--VVKNMLSSAF 676 (681)
Q Consensus 622 d~I~~vD~~G~I~~~N~a~~~l~G~~~--~EliGk~l~~lv~~~~~~--~~~~~l~~al 676 (681)
.=+...|.+|+|+++..+.. ..+|.+ +|++|+.++++.|++|.. .+++-+++++
T Consensus 8 ~F~sRh~~dGKf~~vDq~~~-r~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl 65 (132)
T 1oj5_A 8 SFMTKQDTTGKIISIDTSSL-RAAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVM 65 (132)
T ss_dssp EEEEEECTTCCEEEEECHHH-HTTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHH
T ss_pred eeEEeecCCCcEEEEecccc-cccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 34667899999999999987 477888 999999999999999976 7777777765
No 104
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV}
Probab=93.74 E-value=1 Score=42.89 Aligned_cols=133 Identities=12% Similarity=0.102 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCCCCcCCCcCCCCCchHHHH
Q 005722 197 SYKLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASR 276 (681)
Q Consensus 197 ~~~l~~~~i~rl~~~~~~~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LGlhfPasDIP~qaR 276 (681)
..+++.++-..|.+ .+.+++.+.+.+..+++.|+||..+|-+|+| |+....+... | ..|
T Consensus 13 rLrlL~e~~~~L~~---l~~~~~l~~il~~a~~~~~~d~gsL~l~d~~--~~l~~~aa~G---------------~-~~~ 71 (160)
T 3cit_A 13 RLRLLVDTGQELIQ---LPPEAMRKCVLQRACAFVAMDHGLLLEWGAD--NGVQTTARHG---------------S-KER 71 (160)
T ss_dssp HHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHTTCSEEEEEECC----CCCEEEEEES---------------C-HHH
T ss_pred HHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHhccCeeEEEEEcCC--CceeeeeccC---------------c-hhh
Confidence 34444455555533 4679999999999999999999999999995 6554333221 1 111
Q ss_pred HHHHcCCeEEeecCCCCCceeecCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEE-ecCccccccccccccC
Q 005722 277 FLIMKNKVRMICDCLAPPVKVIQDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVT-INEAEDELDNDQEQGR 355 (681)
Q Consensus 277 ~Ly~~n~vR~I~Dv~~~pv~lv~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIi-v~~~~~~~~~~~~~~~ 355 (681)
...+|+++|....- | +-. +...+..++-|.||+. .+ |
T Consensus 72 ----l~~lr~~~~~~~~g----p-----r~~----------------~~tg~~t~svl~vPL~~~~-------------g 109 (160)
T 3cit_A 72 ----LSTLETTADPLAIG----P-----QWL----------------ERPGTHLPCVLLLPLRGAD-------------E 109 (160)
T ss_dssp ----HTTSCCCCCTTCCS----C-----EEE----------------ECTTSSSCEEEEEEEECSS-------------S
T ss_pred ----hhhhhccccccccc----c-----ccc----------------cccCcccceeEEEeeecCC-------------C
Confidence 34555566665321 0 000 0223345777899996 43 8
Q ss_pred ceeEEEEeecCC-CCCCChhHHHHHHHHHHHHHHHHHH
Q 005722 356 KLWGLVVCHHTS-PRFVPFPLRYACEFLIQVFGVQVNK 392 (681)
Q Consensus 356 kLWGLi~cHh~s-pr~v~~~~R~a~e~l~q~~s~ql~~ 392 (681)
+.+|.+.+=+.- ......+-...+++|+..++..|.+
T Consensus 110 ~~~Gvlql~N~~~~~~f~~eD~e~l~lLA~~~a~aien 147 (160)
T 3cit_A 110 GSFGTLVLANSVAISAPDGEDIESLQLLATLLAAHLEN 147 (160)
T ss_dssp SEEEEEEEEESSCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEeccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999997765 4466777777777777666665543
No 105
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=93.22 E-value=0.9 Score=37.99 Aligned_cols=43 Identities=19% Similarity=0.345 Sum_probs=36.3
Q ss_pred eEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCchH
Q 005722 82 CMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSG 134 (681)
Q Consensus 82 ~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~~ 134 (681)
.++++|.++++|+.+...+..+||.++++ ++|+++.+++.+..
T Consensus 10 ~i~~~d~~~g~I~~~N~aa~~l~G~~~~e----------l~g~~~~~l~~~~~ 52 (114)
T 1ll8_A 10 AIFTVDAKTTEILVANDKACGLLGYSSQD----------LIGQKLTQFFLRSD 52 (114)
T ss_dssp EEEEEETTTCBEEEECTTHHHHHTCCTTT----------TTTSBGGGGSSCTT
T ss_pred eEEEEECCCCeEEEehHHHHHHhCCCHHH----------HcCCCHHHhcCcch
Confidence 56788987689999999999999998876 47999988887653
No 106
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=92.51 E-value=0.081 Score=56.36 Aligned_cols=50 Identities=8% Similarity=0.143 Sum_probs=43.2
Q ss_pred cEEEEcC-CCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHH
Q 005722 623 PILAVDA-SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNML 672 (681)
Q Consensus 623 ~I~~vD~-~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l 672 (681)
..+++|. +++|+.+|..+++++|+++++++|+++.+++.++..+.+.+.+
T Consensus 44 ~Ll~~~~~~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~~~~~~l~~~l 94 (337)
T 2ool_A 44 YLFVVSETDLRIASVSANVEDLLRQPPASLLNVPIAHYLTAASAARLTHAL 94 (337)
T ss_dssp EEEEECTTTCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHHHHHHHHHHH
T ss_pred EEEEEECCCCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCHHHHHHHHHHH
Confidence 3456776 4899999999999999999999999999999988888766654
No 107
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=91.27 E-value=0.63 Score=40.62 Aligned_cols=52 Identities=12% Similarity=0.059 Sum_probs=41.9
Q ss_pred CceEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCchHHHHHHHHh
Q 005722 80 FGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAALQKAA 142 (681)
Q Consensus 80 ~G~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~~~~~l~~~l 142 (681)
.++++++|. +++|+.+|.++..+||.++++ ++|+++.+++.+.-...++..+
T Consensus 9 ~d~i~v~d~-~G~i~yvn~~~~~~lGy~~~e----------l~G~~~~~~ihp~D~~~~~~~~ 60 (111)
T 2vlg_A 9 TDIHAVLAS-NGRIIYISANSKLHLGYLQGE----------MIGSFLKTFLHEEDQFLVESYF 60 (111)
T ss_dssp CCEEEEECT-TSBEEEECTTHHHHHSCCHHH----------HTTSBGGGGBCGGGHHHHHHHH
T ss_pred CCEEEEEcC-CCeEEEEChHHHHHhCCCHHH----------HcCCcHHHeECHhHHHHHHHHH
Confidence 357788885 589999999999999998764 5899999988887666666554
No 108
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=85.03 E-value=2.5 Score=35.43 Aligned_cols=48 Identities=8% Similarity=0.076 Sum_probs=36.5
Q ss_pred eEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCchHHHHHHH
Q 005722 82 CMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAALQK 140 (681)
Q Consensus 82 ~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~~~~~l~~ 140 (681)
+++.+|. +++|+.+|..+.+++|.++++ ++|+++.+++.+.-...+..
T Consensus 14 ~i~~~d~-~g~i~~~n~~~~~~~G~~~~e----------l~g~~~~~~i~p~d~~~~~~ 61 (121)
T 3f1p_B 14 FISRHNI-EGIFTFVDHRCVATVGYQPQE----------LLGKNIVEFCHPEDQQLLRD 61 (121)
T ss_dssp EEEEECT-TSBEEEECTTHHHHHSCCGGG----------TTTSBGGGGBCTTTHHHHHH
T ss_pred eEEEECC-CceEEEECcchhhhhCCChHH----------HcCCCHHHeECHHHHHHHHH
Confidence 4556666 588999999999999999876 46888888887765444443
No 109
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=83.73 E-value=0.57 Score=49.61 Aligned_cols=51 Identities=24% Similarity=0.348 Sum_probs=44.9
Q ss_pred cEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHHH
Q 005722 623 PILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNMLS 673 (681)
Q Consensus 623 ~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l~ 673 (681)
..+++|.+++|+.++.-+++++|.++++++|+++.+++.++....+.+.+.
T Consensus 31 ~Ll~~~~~~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll~~~~~~~l~~~l~ 81 (327)
T 4e04_A 31 LLLALAADMTIVAGSDNLPELTGLAIGALIGRSAADVFDSETHNRLTIALA 81 (327)
T ss_dssp EEEEECTTCBEEEEETTHHHHHSCCHHHHTTCBHHHHBCHHHHHHHHHHHH
T ss_pred EEEEEcCCCeEEEEcccHHHHhCCChHhhcCCCHHHHcCHHHHHHHHHHhh
Confidence 567899889999999999999999999999999999998877777766554
No 110
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=82.63 E-value=32 Score=33.83 Aligned_cols=128 Identities=10% Similarity=0.025 Sum_probs=77.8
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCCCCcCCCcCCCCCchHHHHHHHHcCC
Q 005722 204 AISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNK 283 (681)
Q Consensus 204 ~i~rl~~~~~~~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LGlhfPasDIP~qaR~Ly~~n~ 283 (681)
++.++.. +.+.+++.+.+ ..+.+.+|||++..+-+.+...+ .+ ..+ -.+..|+...+.|..+.
T Consensus 8 ~~~~l~~--a~~~~~l~~~l-~~~~~~lGf~~~~y~~~~~~~~~-------~~--~~~-----i~~~~p~~w~~~Y~~~~ 70 (237)
T 3szt_A 8 YLEILSR--ITTEEEFFSLV-LEICGNYGFEFFSFGARAPFPLT-------AP--KYH-----FLSNYPGEWKSRYISED 70 (237)
T ss_dssp HHHHHHH--CCSHHHHHHHH-HHHHHHTTCSEEEEEEECCCSTT-------SC--CEE-----EEECCCHHHHHHHHHTT
T ss_pred HHHHHHc--CCCHHHHHHHH-HHHHHHcCCCeEEEEeecCCCCC-------CC--CeE-----eeCCCCHHHHHHHHHCC
Confidence 4667777 45899999887 77888999999998876643211 00 001 12355778888888875
Q ss_pred eEEeecCCCCCceeec-CCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCceeEEEE
Q 005722 284 VRMICDCLAPPVKVIQ-DKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVV 362 (681)
Q Consensus 284 vR~I~Dv~~~pv~lv~-~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~kLWGLi~ 362 (681)
.-.+ . |++. ......|+.-+....+. .+--.++.+.+|+...+++|+.-. +..+|+++
T Consensus 71 y~~~-----D--Pv~~~~~~~~~p~~W~~~~~~~-~~~~~~~a~~~gl~~G~~~p~~~~-------------~g~~g~ls 129 (237)
T 3szt_A 71 YTSI-----D--PIVRHGLLEYTPLIWNGEDFQE-NRFFWEEALHHGIRHGWSIPVRGK-------------YGLISMLS 129 (237)
T ss_dssp GGGT-----C--HHHHHHHHSCSCEEEETTTCSS-CHHHHHHHHHTTCCEEEEEEEECG-------------GGCEEEEE
T ss_pred Cccc-----C--hHhhhhcCCCCCEEeCCCCccc-HHHHHHHHHHcCCCCEEEEEeeCC-------------CCCeEEEE
Confidence 4211 1 1211 00011222222111222 355667888999999999999854 56789888
Q ss_pred eecCCCC
Q 005722 363 CHHTSPR 369 (681)
Q Consensus 363 cHh~spr 369 (681)
.....+.
T Consensus 130 ~~~~~~~ 136 (237)
T 3szt_A 130 LVRSSES 136 (237)
T ss_dssp EEESSSC
T ss_pred EecCCCc
Confidence 8765543
No 111
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=79.41 E-value=1.2 Score=47.46 Aligned_cols=49 Identities=24% Similarity=0.299 Sum_probs=43.0
Q ss_pred cEEEEcC-CCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHHHHHH
Q 005722 623 PILAVDA-SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVVKNML 672 (681)
Q Consensus 623 ~I~~vD~-~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~~~~l 672 (681)
..+++|. +++|+.++.-+++++|.++++++|+++.+++.+ ..+.+...+
T Consensus 54 ~LL~l~~~~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~-~~~~l~~~l 103 (343)
T 3s7o_A 54 ALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE-QWPALQAAL 103 (343)
T ss_dssp EEEEEETTTCBEEEEETTHHHHHSSCHHHHTTCBHHHHSTT-THHHHHHHS
T ss_pred EEEEEECCCCEEEEEcccHHHHhCcChHHHcCCCHHHHHhH-HHHHHHHHh
Confidence 5677886 899999999999999999999999999999988 777776554
No 112
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=75.41 E-value=2.6 Score=35.05 Aligned_cols=50 Identities=8% Similarity=0.171 Sum_probs=37.8
Q ss_pred CCceEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCchHHHHHH
Q 005722 79 PFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAALQ 139 (681)
Q Consensus 79 p~G~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~~~~~l~ 139 (681)
..-+++.+|. +++|+.+|..+.+++|.++++ ++|+++.+++.+.-...+.
T Consensus 8 ~~~~i~~~d~-~g~i~~~n~~~~~~~Gy~~~e----------l~g~~~~~~~~p~d~~~~~ 57 (117)
T 3f1p_A 8 SKTFLSEHSM-DMKFTYCDDRITELIGYHPEE----------LLGRSAYEFYHALDSENMT 57 (117)
T ss_dssp GGEEEEEECT-TCBEEEECTHHHHHHCCCHHH----------HTTSBGGGGBCGGGHHHHH
T ss_pred CccEEEEECC-CceEEEECcChhhhhCCCHHH----------HcCCchhheECHHHHHHHH
Confidence 3455666776 588999999999999998764 5788888888776544443
No 113
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=73.96 E-value=4.3 Score=33.40 Aligned_cols=40 Identities=8% Similarity=0.144 Sum_probs=31.7
Q ss_pred eEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCc
Q 005722 82 CMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTS 132 (681)
Q Consensus 82 ~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~ 132 (681)
.++++|.+ ++|+.+..-+..++|.++++ ++|+++.+++..
T Consensus 19 ~i~~~D~~-g~I~~~N~aa~~l~g~~~~~----------~~g~~~~~~~~~ 58 (115)
T 3b33_A 19 ATLILDDG-LAIRYANPAAELLFSQSAKR----------IVEQSLSQLIQH 58 (115)
T ss_dssp EEEEECTT-CBEEEECHHHHHHTTSCHHH----------HTTCBHHHHCSE
T ss_pred eEEEECCC-CcEEEECHHHHHHhCCCHHH----------HhCCCHHHHhCc
Confidence 35778875 78999999999999987643 578888888764
No 114
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=72.65 E-value=4.8 Score=33.38 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=34.2
Q ss_pred ceEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCchHHH
Q 005722 81 GCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAA 136 (681)
Q Consensus 81 G~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~~~~ 136 (681)
-+++.+|.+ ++|+.++..+.+++|.++++ ++|+++.+++.+....
T Consensus 14 ~~i~~~d~~-g~i~~~N~~~~~~~G~~~~e----------l~g~~~~~~~~p~d~~ 58 (121)
T 2kdk_A 14 EFITRFAVN-GKFVYVDQRATAILGYLPQE----------LLGTSCYEYFHQDDHN 58 (121)
T ss_dssp EEEEEECTT-SBEEEECTHHHHHTCCCTTT----------SBTSBTTTTBCSSSHH
T ss_pred cEEEEECCC-eeEEEEChhHHHHHCCCHHH----------HcCCcHHHeeCHHHHH
Confidence 355667764 78999999999999999876 3688777777654433
No 115
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=70.45 E-value=6.1 Score=33.31 Aligned_cols=40 Identities=15% Similarity=0.246 Sum_probs=32.6
Q ss_pred eEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCc
Q 005722 82 CMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTS 132 (681)
Q Consensus 82 ~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~ 132 (681)
.++++|. +++|+.+...+.+++|.++++ ++|+++.+++++
T Consensus 24 ~i~~~D~-~g~i~~~N~a~~~l~g~~~~e----------~~G~~~~~~~~~ 63 (118)
T 3fg8_A 24 GFMALDE-DLRIIYVNSGCLRHVRRSRDE----------LLGRVVTEVLPE 63 (118)
T ss_dssp EEEEECT-TCBEEEECHHHHHHHTCCHHH----------HTTSBHHHHCGG
T ss_pred eEEEECC-CCeEEEECHHHHHHhCCCHHH----------HcCCcHHHHcCc
Confidence 3567887 488999999999999997654 589999988864
No 116
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=65.26 E-value=4.9 Score=33.55 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=33.6
Q ss_pred eEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCchH
Q 005722 82 CMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSG 134 (681)
Q Consensus 82 ~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~~ 134 (681)
.++++|.+ ++|+.++..+..++|.++++ ++|+++..++.+..
T Consensus 5 ~i~~~d~~-g~i~~~N~a~~~l~G~~~~e----------l~G~~~~~l~~~~~ 46 (119)
T 2vv6_A 5 AMIVIDGH-GIIQLFSTAAERLFGWSELE----------AIGQNVNILMPEPD 46 (119)
T ss_dssp EEEEEETT-SBEEEECHHHHHHHCCCHHH----------HTTSBGGGGSCTTH
T ss_pred eEEEECCC-CeEEEEhHHHHHHhCCCHHH----------HcCCCHHHhCCchH
Confidence 45678875 78999999999999998754 57998888876543
No 117
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=62.45 E-value=9 Score=31.84 Aligned_cols=41 Identities=15% Similarity=0.340 Sum_probs=32.2
Q ss_pred CCceEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCc
Q 005722 79 PFGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTS 132 (681)
Q Consensus 79 p~G~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~ 132 (681)
|.|++ +|. +++|+.++..+.+++|.++++ ++|+++..++..
T Consensus 13 ~~~i~--~~~-~g~i~~~N~a~~~l~G~~~~e----------l~g~~~~~~~~~ 53 (120)
T 3mqq_A 13 PIGLV--LSR-DRVIEDCNDELAAIFRCARAD----------LIGRSFEVLYPS 53 (120)
T ss_dssp SSEEE--EEE-TTEEEEECHHHHHHTTSCHHH----------HTTCBGGGGSSS
T ss_pred CceEE--Eec-CCEEHHHHHHHHHHhCcCHHH----------hCCCchhhccCC
Confidence 34663 465 689999999999999998754 579898888765
No 118
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=62.33 E-value=11 Score=31.11 Aligned_cols=51 Identities=20% Similarity=0.267 Sum_probs=34.2
Q ss_pred EEEEec--CCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCch----HHHHHHHHhc
Q 005722 83 MIAVDE--QNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSS----GAAALQKAAN 143 (681)
Q Consensus 83 LLa~d~--~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~----~~~~l~~~l~ 143 (681)
++++|. ..++|+.++.....++|.++++ ++|++...+.++. ....+.+++.
T Consensus 6 i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e----------~~G~~~~~l~~~~~~~~~~~~~~~~~~ 62 (109)
T 1n9l_A 6 FVVADATLPDCPLVYASEGFYAMTGYGPDE----------VLGHNCRFLQGEGTDPKEVQKIRDAIK 62 (109)
T ss_dssp EEEEETTSTTCCEEEECHHHHHHHCCCHHH----------HTTSCGGGGCCTTCCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCCeEEEEchHHHHHHCcCHHH----------HcCCCchhcCCCCCCHHHHHHHHHHHH
Confidence 456775 3589999999999999998765 4677765554432 2344555543
No 119
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=61.55 E-value=14 Score=29.43 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=31.5
Q ss_pred EEEEecC--CceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCch
Q 005722 83 MIAVDEQ--NFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSS 133 (681)
Q Consensus 83 LLa~d~~--~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~ 133 (681)
++++|.. +++|+.++..+.+++|.++++ ++|+++..++.+.
T Consensus 10 i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~----------~~g~~~~~~~~~~ 52 (115)
T 4eet_B 10 FVITDPRLPDNPIIFASDGFLELTEYSREE----------ILGRNARFLQGPE 52 (115)
T ss_dssp EEEECTTSTTCCEEEECHHHHHHHCCCHHH----------HTTSCGGGGCCTT
T ss_pred EEEEcCCCCCCcEEEEcHHHHHHHCcCHHH----------HhCCCHHHhcCCC
Confidence 4567773 688999999999999997654 5788877776543
No 120
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=61.06 E-value=6 Score=32.59 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=35.2
Q ss_pred eEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCchHHHHH
Q 005722 82 CMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAAL 138 (681)
Q Consensus 82 ~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~~~~~l 138 (681)
.++++|.+ ++|+.++..+.+++|.++++ ++|+++.+++++.....+
T Consensus 31 ~i~~~d~~-g~i~~~N~~~~~~~g~~~~~----------~~g~~~~~~~~~~~~~~~ 76 (125)
T 3fc7_A 31 GIVHLTTN-GTILSVNPSMAGRLGADPDT----------LVGQQLSAVMDSEAANQR 76 (125)
T ss_dssp EEEEEETT-SBEEEECHHHHHHHTSCHHH----------HTTSBGGGSSCHHHHHHH
T ss_pred eEEEEcCC-CeEEEECHHHHHHhCCCHHH----------HcCccHHHhCCHHHHHHH
Confidence 45677875 78999999999999997653 579999999854443333
No 121
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=60.65 E-value=6.6 Score=33.40 Aligned_cols=42 Identities=14% Similarity=0.265 Sum_probs=33.7
Q ss_pred eEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCchH
Q 005722 82 CMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSG 134 (681)
Q Consensus 82 ~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~~ 134 (681)
.++++|.+ ++|+.+...+..++|.++++ ++|+++..++.+..
T Consensus 28 ~i~~~d~~-g~i~~~N~a~~~l~Gy~~~e----------liG~~~~~l~~~~~ 69 (130)
T 1d06_A 28 ATVVSATD-GTIVSFNAAAVRQFGYAEEE----------VIGQNLRILMPEPY 69 (130)
T ss_dssp EEEEEETT-SBEEEECHHHHHHHCCCHHH----------HTTSBGGGGSCTTH
T ss_pred eEEEECCC-CeEEEEcHHHHHHHCCCHHH----------HcCCcHHHHCCchh
Confidence 45678875 78999999999999998754 57998888877654
No 122
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=60.52 E-value=3.8 Score=36.38 Aligned_cols=42 Identities=24% Similarity=0.304 Sum_probs=34.2
Q ss_pred eEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCchH
Q 005722 82 CMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSG 134 (681)
Q Consensus 82 ~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~~ 134 (681)
.++++|.+ ++|+.+...+..+||.++++ ++|+++.+++.+..
T Consensus 19 ~i~~~D~~-g~I~~~N~aa~~l~G~~~~e----------l~G~~~~~l~~~~~ 60 (129)
T 3mfx_A 19 AMILVNAN-GFIRSCNQRSAELLDCPQVS----------LKGQDWRNFLTEHH 60 (129)
T ss_dssp EEEEEETT-SBEEEECHHHHHHTTSCHHH----------HTTSBGGGGBCTTC
T ss_pred eEEEECCC-CEEEeEhHHHHHHHCcCHHH----------HcCCcHHHHcChHh
Confidence 35778885 88999999999999998754 58999988887643
No 123
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=59.02 E-value=1.3e+02 Score=29.89 Aligned_cols=132 Identities=8% Similarity=-0.006 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCCCCcCCCcCCCCCchHHHHHH
Q 005722 199 KLAAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFL 278 (681)
Q Consensus 199 ~l~~~~i~rl~~~~~~~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LGlhfPasDIP~qaR~L 278 (681)
..+...+.+++. +.+.+++. .+++.+.+.+|||++..+-......+..- ++..+ -.+..|+...+.
T Consensus 22 ~~l~~~l~~l~~--a~~~~~l~-~~l~~~~~~lGf~~~~y~~~~~~~~~~~~------~~~~~-----i~~~yp~~W~~~ 87 (265)
T 3qp6_A 22 WTLLEWIHMAGH--IETEGELK-AFLDNILSQAPSDRIILVLGRLNNQNQIQ------RMEKV-----LNVSYPSDWLNQ 87 (265)
T ss_dssp HHHHHHHHHHTT--CCSHHHHH-HHHHHHTCSSTTCEEEEEEEEECTTSCEE------EEEEE-----EESSCCHHHHHH
T ss_pred HHHHHHHHHHhc--CCCHHHHH-HHHHHHHHHcCCCEEEEEeecCCCCcccc------cccce-----eecCCcHHHHHH
Confidence 356678899988 55899988 55667888999999987554432221100 00011 234567888899
Q ss_pred HHcCCeEEeecCCCCCceeec-CCCCCCCcccccccccCCCh---HHHHHHHhcCCeeEEEEEE-EecCccccccccccc
Q 005722 279 IMKNKVRMICDCLAPPVKVIQ-DKKLDQPLSLCGSTLRAPHG---CHARYMENMGSIASLVMSV-TINEAEDELDNDQEQ 353 (681)
Q Consensus 279 y~~n~vR~I~Dv~~~pv~lv~-~~~~~~pldLs~s~LRsvsp---~H~qYL~NMGV~ASlsvsI-iv~~~~~~~~~~~~~ 353 (681)
|..+..-.| + |++. .. ...|+.-+....+..++ --.+..+.+|+...+++|+ .-.
T Consensus 88 Y~~~~y~~~---D----Pvv~~~~-~~~p~~W~~~~~~~~~~~~~~~~~~a~~~Gl~~G~tipi~~~~------------ 147 (265)
T 3qp6_A 88 YSQENFAQH---D----PIMRIHL-GQGPVIWEERFSRAKGSEEKRFIAEASSNGMGSGITFSAASDR------------ 147 (265)
T ss_dssp HHHTTGGGT---C----GGGGCCT-TSSCEEHHHHHTTCCSHHHHHHHHHHHHTTCSSEEEEEEECSS------------
T ss_pred HHHCcCccc---C----hHHHHhc-CCCCEEECCcccccCChhHHHHHHHHHHcCCccceEEEEEEcC------------
Confidence 998654211 1 1221 11 22333322211111233 3345568999999999999 643
Q ss_pred cCceeEEEEeec
Q 005722 354 GRKLWGLVVCHH 365 (681)
Q Consensus 354 ~~kLWGLi~cHh 365 (681)
+...|++....
T Consensus 148 -~g~~g~ls~~~ 158 (265)
T 3qp6_A 148 -NNVGSILSIGG 158 (265)
T ss_dssp -SSEEEEEEEES
T ss_pred -CCCEEEEEeec
Confidence 45678877665
No 124
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=58.64 E-value=17 Score=32.10 Aligned_cols=43 Identities=16% Similarity=0.151 Sum_probs=35.3
Q ss_pred HHHHHHHhcCccEEEEcCCCceeeecHHhHHhcCCChhhhhcC
Q 005722 612 EMVRLIETAAVPILAVDASGNVNGWNSKAAELTGLTVDQAIGT 654 (681)
Q Consensus 612 el~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk 654 (681)
-.+.|..++|.|+++-+.+-.|+|.|.++.+||--...-+-|.
T Consensus 21 ~iq~iY~nSPVpVCVRNq~RkilYaN~aF~elF~Ked~~~sg~ 63 (127)
T 4ew7_A 21 SIQDIYKNSPVPVCVRNQSRKIIYANGAFIELFSKEDQPLSGD 63 (127)
T ss_dssp HHHHHHTTCSSCEEEECTTSCEEEECHHHHHHTTSCCCGGGCT
T ss_pred hHHhhhcCCCccEEEecccceEEEecchHHHHhhcccCcccCc
Confidence 3567899999999999999999999999999975444444454
No 125
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=57.14 E-value=5.6 Score=36.78 Aligned_cols=46 Identities=15% Similarity=0.251 Sum_probs=36.1
Q ss_pred eEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCchHHHHHH
Q 005722 82 CMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAALQ 139 (681)
Q Consensus 82 ~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~~~~~l~ 139 (681)
.++++|.+ ++|+.+..-++.++|+++++ ++|+++.++|+. ....++
T Consensus 34 gi~v~D~~-g~I~~~N~a~~~~~G~~~~e----------viG~~~~~~~p~-~~~~~~ 79 (152)
T 3mxq_A 34 ALCIVRND-YVIVKVNEYFESRVIFDGET----------MQGKNILELFPE-SADYLK 79 (152)
T ss_dssp EEEEEETT-SBEEEECHHHHHTSSSCHHH----------HTTSBHHHHSGG-GHHHHH
T ss_pred CEEEEcCC-CEEEEECHHHHHHHCcCHHH----------HCCCCHHHhcCC-hHHHHH
Confidence 35678885 88999999999999998754 589999999987 444333
No 126
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=56.12 E-value=11 Score=30.04 Aligned_cols=40 Identities=20% Similarity=0.269 Sum_probs=32.3
Q ss_pred eEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCc
Q 005722 82 CMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTS 132 (681)
Q Consensus 82 ~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~ 132 (681)
.++++|. +++|+.++..+.+++|.++++ ++|+++.++++.
T Consensus 15 ~i~~~d~-~g~i~~~N~~~~~~~g~~~~~----------~~g~~~~~~~~~ 54 (114)
T 3luq_A 15 ALAMFDR-EMRYLAVSRRWREDYGLGDGD----------ILGMSHYDIFPE 54 (114)
T ss_dssp EEEEEET-TCBEEEECHHHHHHTTCCSSC----------CTTCBHHHHCTT
T ss_pred eEEEEcC-CcEEEEECHHHHHHHCCCHHH----------HcCCcHHHHCCc
Confidence 3567786 588999999999999998875 478888888853
No 127
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=55.78 E-value=5.1 Score=44.93 Aligned_cols=46 Identities=9% Similarity=0.250 Sum_probs=39.5
Q ss_pred cEEEEcC-CCceeeecHHhHHhcCCChhhhhcCcccccccCCCHHHH
Q 005722 623 PILAVDA-SGNVNGWNSKAAELTGLTVDQAIGTALVDLVAGDSVDVV 668 (681)
Q Consensus 623 ~I~~vD~-~G~I~~~N~a~~~l~G~~~~EliGk~l~~lv~~~~~~~~ 668 (681)
..+++|. +++|+.++.-+++++|.++++++|+++.+++.++..+.+
T Consensus 31 ~LLal~~~~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~~~~~~l 77 (520)
T 3zq5_A 31 LVVVLQEPDLTISQISANCTGILGRSPEDLLGRTLGEVFDSFQIDPI 77 (520)
T ss_dssp EEEEEETTTTEEEEEETTHHHHHSCCHHHHTTSBHHHHCEESSCCCC
T ss_pred EEEEEECCCCEEEEEcccHHHHhCcChHHHcCCCHHHHcCHHHHHHH
Confidence 4578886 899999999999999999999999999999876655433
No 128
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=55.28 E-value=17 Score=31.11 Aligned_cols=41 Identities=22% Similarity=0.207 Sum_probs=31.7
Q ss_pred eEEEEec--CCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCc
Q 005722 82 CMIAVDE--QNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTS 132 (681)
Q Consensus 82 ~LLa~d~--~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~ 132 (681)
.++++|. .+++|+.++..+.+++|.++++ ++|+++..++.+
T Consensus 37 ~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~e----------l~g~~~~~l~~~ 79 (149)
T 3d72_A 37 ALILCDLKQKDTPIVYASEAFLYMTGYSNAE----------VLGRNCRFLQSP 79 (149)
T ss_dssp CEEEEETTSTTCCEEEECHHHHHHHCCCHHH----------HTTSCGGGGGST
T ss_pred cEEEEeccCCCCcEEEECHHHHHHHCcCHHH----------HcCCChhHhCCc
Confidence 4567773 3588999999999999998754 578888777654
No 129
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis}
Probab=53.42 E-value=22 Score=31.76 Aligned_cols=120 Identities=14% Similarity=0.112 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCCCCcCCCcCCCCCchHHHHHHHHcCCeEEeecCCCCCceee
Q 005722 219 LCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPPVKVI 298 (681)
Q Consensus 219 l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LGlhfPasDIP~qaR~Ly~~n~vR~I~Dv~~~pv~lv 298 (681)
.++..++-+.+.||+ =|.|- | .-.|+|=+-.+ -..|+ | ..|++..++....+++.++.+... .++.
T Consensus 3 ~a~~~AeiI~~~~~~-aV~It--D---~~~ilA~~G~g-~~~~~----~-~~is~~~~~~i~~~k~~~~~~~~~--~~~~ 68 (123)
T 2w1r_A 3 FAKEYADALYDSLGH-SVLIC--D---RDVYIAVSGSS-KKDYL----N-KSISEMLERTMDQRSSVLESDAKS--VQLV 68 (123)
T ss_dssp HHHHHHHHHHHHHCS-EEEEE--C---SSBEEEEESSC-HHHHB----T-CBBCHHHHHHHHHCSCEEESSCEE--EESB
T ss_pred HHHHHHHHHHHHHCC-eEEEE--c---CccEEEEEecC-hhhcC----C-CccCHHHHHHHHcCCEEEEcCCcc--cccc
Confidence 356677789999999 77774 2 12345544222 12233 3 467888999999999988855442 1111
Q ss_pred cCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCceeEEEEeecCCCCCCChhHHHH
Q 005722 299 QDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPRFVPFPLRYA 378 (681)
Q Consensus 299 ~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~kLWGLi~cHh~spr~v~~~~R~a 378 (681)
..+ .| ...|.+++||+.+ |+.=|.|.-- +..+.+..-.+..
T Consensus 69 ~~~-----------------~~--------~~~s~ii~PI~~~-------------g~viG~i~l~-~~~~~~~~~~~~l 109 (123)
T 2w1r_A 69 NGI-----------------DE--------DMNSYTVGPIVAN-------------GDPIGAVVIF-SKDQTMGEVEHKA 109 (123)
T ss_dssp TTC-----------------EE--------EESEEEEEEEEET-------------TEEEEEEEEE-ESSSCCCHHHHHH
T ss_pred CCC-----------------CC--------CeeEEEEEEEEEC-------------CEEEEEEEEE-EcCCCCCHHHHHH
Confidence 000 01 2478899999987 7889998877 6566688888889
Q ss_pred HHHHHHHHHHHHH
Q 005722 379 CEFLIQVFGVQVN 391 (681)
Q Consensus 379 ~e~l~q~~s~ql~ 391 (681)
++-+++.||.|++
T Consensus 110 a~gla~lls~Qme 122 (123)
T 2w1r_A 110 VETAAGFLARQME 122 (123)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998874
No 130
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=50.62 E-value=6.2 Score=44.12 Aligned_cols=48 Identities=19% Similarity=0.301 Sum_probs=40.9
Q ss_pred cEEEEcCCCceeeecHHhHHhcCCChhhhhcCcccc-cccCCCHHHHHHHH
Q 005722 623 PILAVDASGNVNGWNSKAAELTGLTVDQAIGTALVD-LVAGDSVDVVKNML 672 (681)
Q Consensus 623 ~I~~vD~~G~I~~~N~a~~~l~G~~~~EliGk~l~~-lv~~~~~~~~~~~l 672 (681)
..+++|.+++|+.++.-+++++|.++ ++|+++.+ ++.++..+.+...+
T Consensus 28 ~Ll~l~~~~~I~~~S~N~~~~lg~~~--~lG~~l~~~ll~~~~~~~l~~~l 76 (505)
T 3nhq_A 28 ALVTLRADGMVLAASENIQALLGFVA--SPGSYLTQEQVGPEVLRMLEEGL 76 (505)
T ss_dssp EEEEECTTSBEEEEETTHHHHHSSCC--CTTCBCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCeEEEEcccHHHHhCccc--ccCCchhhhhCCHHHHHHHHHHh
Confidence 56789999999999999999999998 99999998 88776666655544
No 131
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=49.38 E-value=7.1 Score=31.97 Aligned_cols=43 Identities=9% Similarity=0.213 Sum_probs=33.5
Q ss_pred eEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCchHH
Q 005722 82 CMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGA 135 (681)
Q Consensus 82 ~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~~~ 135 (681)
.++++|.+ ++|+.++..+.+++|.++++ ++|+++.+++.+...
T Consensus 11 ~i~~~d~~-g~i~~~N~~~~~~~g~~~~~----------~~g~~~~~~~~~~~~ 53 (126)
T 3mjq_A 11 MILIINRE-GRLLYANTAVPKKLGYTHEE----------LMSMHILTITSAGKM 53 (126)
T ss_dssp EEEEEETT-SBEEEECTHHHHHHSCCHHH----------HHHSBHHHHHCTTCH
T ss_pred eEEEEeCC-CcEEEEcHHHHHHHCCCHHH----------HcCCCHHHHcCchhH
Confidence 45678875 88999999999999997653 478888888765533
No 132
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=46.12 E-value=17 Score=30.14 Aligned_cols=40 Identities=13% Similarity=0.113 Sum_probs=30.9
Q ss_pred eEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCc
Q 005722 82 CMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTS 132 (681)
Q Consensus 82 ~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~ 132 (681)
.++++|.+ ++|+.++..+..++|.++++ ++|+++..+..+
T Consensus 17 ~i~~~d~~-g~i~~~N~a~~~~~G~~~~e----------lig~~~~~l~~~ 56 (120)
T 2gj3_A 17 AISITDLK-ANILYANRAFRTITGYGSEE----------VLGKNESILSNG 56 (120)
T ss_dssp EEEEECTT-CBEEEECHHHHHHHCCCTTG----------GGGCBGGGGCCT
T ss_pred eEEEECCC-CCEEeehHHHHHHHCcCHHH----------HcCCCHHHcCCC
Confidence 45667764 78999999999999999876 467777766553
No 133
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=44.96 E-value=22 Score=36.74 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhcCccEEEEcCCCceeeecHHhHHhcC
Q 005722 607 RIITNEMVRLIETAAVPILAVDASGNVNGWNSKAAELTG 645 (681)
Q Consensus 607 ~~~~~el~~Lie~s~d~I~~vD~~G~I~~~N~a~~~l~G 645 (681)
..+...++.+++..+-|-+++|..+.|+.||+++..|+|
T Consensus 95 ~~v~p~l~~lLd~l~~PA~V~d~~~dvla~N~~a~~L~~ 133 (292)
T 3pxp_A 95 EESLQYLIDMIRNMNVPAFVTDQYVNIIAANMITIRFFN 133 (292)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEETTCBEEEEEHHHHHHHT
T ss_pred cccCHHHHHHHHhcCCCeEEECCCCCHhhcCHHHHHHhC
Confidence 445677889999998899999999999999999999996
No 134
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=44.16 E-value=29 Score=29.30 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=30.3
Q ss_pred eEEEEecC--CceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCc
Q 005722 82 CMIAVDEQ--NFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTS 132 (681)
Q Consensus 82 ~LLa~d~~--~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~ 132 (681)
.++++|.+ +++|+.++..+..++|.++++ ++|+++..+..+
T Consensus 11 ~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~e----------l~g~~~~~l~~~ 53 (132)
T 2pr5_A 11 GVVITDPALEDNPIVYVNQGFVQMTGYETEE----------ILGKNCRFLQGK 53 (132)
T ss_dssp EEEEECTTSTTCCEEEECHHHHHHHSCCHHH----------HTTSCGGGGCCT
T ss_pred cEEEEeCCCCCCcEEEECHHHHHHhCcCHHH----------HcCCChhhhCCC
Confidence 34567774 358999999999999998754 578777666543
No 135
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=43.61 E-value=10 Score=31.36 Aligned_cols=41 Identities=10% Similarity=0.113 Sum_probs=32.1
Q ss_pred eEEEEecC--CceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCc
Q 005722 82 CMIAVDEQ--NFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTS 132 (681)
Q Consensus 82 ~LLa~d~~--~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~ 132 (681)
.++++|.. +++|+.++..+..++|.++++ ++|.++..++.+
T Consensus 9 ~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e----------~~g~~~~~~~~~ 51 (128)
T 3t50_A 9 PMLITNPHLPDNPIVFANPAFLKLTGYEADE----------VMGRNCRFLQGH 51 (128)
T ss_dssp CEEEECTTSTTCCEEEECHHHHHHHCCCHHH----------HTTSCGGGGCCT
T ss_pred cEEEecCCCCCCcEEEEcHHHHHHhCcCHHH----------HcCCCHhhhcCC
Confidence 35677773 688999999999999997654 578888877754
No 136
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=43.27 E-value=10 Score=30.66 Aligned_cols=40 Identities=8% Similarity=0.216 Sum_probs=31.3
Q ss_pred eEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCc
Q 005722 82 CMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTS 132 (681)
Q Consensus 82 ~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~ 132 (681)
.++++|.+ ++|+.++.-+..++|.++++ ++|+++.+++..
T Consensus 25 ~i~~~d~~-g~i~~~N~~~~~l~G~~~~e----------l~g~~~~~~~~~ 64 (118)
T 3olo_A 25 ASFCLGDN-WQFLYVNDATCRMTEYSREQ----------LLSMNLQDIDVD 64 (118)
T ss_dssp EEEEECTT-SBEEEECHHHHHHHCCCHHH----------HTTCBGGGTBTT
T ss_pred eEEEECCC-CcEEEEHHHHHHHHCCCHHH----------HhCCChhhcccc
Confidence 35677874 78999999999999998754 478888777654
No 137
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=41.71 E-value=31 Score=30.55 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=31.5
Q ss_pred EEEEecC--CceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCch
Q 005722 83 MIAVDEQ--NFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSS 133 (681)
Q Consensus 83 LLa~d~~--~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~ 133 (681)
++++|.+ +++|+.++..+..++|.++++ ++|+++..++.+.
T Consensus 20 i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e----------~~g~~~~~~~~~~ 62 (176)
T 4hia_A 20 LTLVDMSLPEQPVVLANPPFLRMTGYTEGQ----------ILGFNCRFLQRGD 62 (176)
T ss_dssp CEEEETTSTTCCEEEECHHHHHHHTCCHHH----------HTTSCGGGGCCTT
T ss_pred EEEEecCCCCCcEEEECHHHHHHHCcCHHH----------HcCCCcceeeCCC
Confidence 3557775 388999999999999998754 5788877777553
No 138
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=41.56 E-value=35 Score=31.03 Aligned_cols=56 Identities=11% Similarity=0.113 Sum_probs=40.1
Q ss_pred cchhhhhhcccCCCCCCCCceEEEEecCCceEEEEccC---hhhhhCCCCCCCCCccccchhccCCchhhhcCchHHHH
Q 005722 62 STVSAYLQRVQRGRLIQPFGCMIAVDEQNFTVLGYSEN---APEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSGAAA 137 (681)
Q Consensus 62 ~~~t~~~~~I~~pG~IQp~G~LLa~d~~~~~I~~~SeN---~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~~~~~ 137 (681)
+.+.+.|+.|..+ ++++|.+ ++|+.++.. ++.++|. +++ .+|+++.+++.+.....
T Consensus 19 ~~l~~IL~~~~~g--------I~~vD~~-g~I~~~N~a~~~~~~i~g~-~~~----------~iGr~v~~~~~~~~~~~ 77 (151)
T 2qkp_A 19 EQANLILNHLPLE--------ITFVNKD-DIFQYYNDSVPAAEMVFKR-TPS----------QVGRNVELCHPPKVLDK 77 (151)
T ss_dssp HHHHHHHHHSSSE--------EEEEETT-SBEEEECCCSCGGGCSSCC-CGG----------GTTSBGGGSSCHHHHHH
T ss_pred HHHHHHHHhCCCc--------eEEEcCC-CeEEEEeCCCchhhhhcCC-CHH----------HcCCCHHHhCCHHHHHH
Confidence 4455555555432 6789985 889999999 8999994 332 58999999988665443
No 139
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=40.88 E-value=48 Score=25.18 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=22.7
Q ss_pred EEEEecC--CceEEEEccChhhhhCCCCCC
Q 005722 83 MIAVDEQ--NFTVLGYSENAPEMLDLAPHA 110 (681)
Q Consensus 83 LLa~d~~--~~~I~~~SeN~~~~Lg~~~~~ 110 (681)
++++|.. +++|+.++..+..++|.++++
T Consensus 4 i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~ 33 (110)
T 1byw_A 4 FIIANARVENCAVIYCNDGFCELCGYSRAE 33 (110)
T ss_dssp EEEEETTSSSCBEEEECHHHHHHHTCCHHH
T ss_pred EEEEeccCCCCcEEEECHHHHHHhCCCHHH
Confidence 4667764 589999999999999997654
No 140
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=40.00 E-value=12 Score=28.21 Aligned_cols=36 Identities=17% Similarity=0.391 Sum_probs=28.8
Q ss_pred EEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhh
Q 005722 83 MIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTL 129 (681)
Q Consensus 83 LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~ 129 (681)
++++|.+ ++|+.+...+..++|.++++ ++|+++.++
T Consensus 5 i~~~d~~-g~i~~~N~~~~~l~g~~~~~----------~~g~~~~~~ 40 (96)
T 3a0s_A 5 IITLSKD-GRITEWNKKAEQLFGLKKEN----------VLGRRLKDL 40 (96)
T ss_dssp EEEEETT-SBEEEECHHHHHHHCCCHHH----------HTTSBGGGS
T ss_pred EEEEcCC-CCEeehhHHHHHHhCCCHHH----------hcCCCHHHC
Confidence 5678875 88999999999999987643 468887776
No 141
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=38.64 E-value=27 Score=34.75 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHhcCccEEEEc-CCCceeeecHHhHHhcCCChhhh----hcC----cccccccCCCHHH
Q 005722 603 IDELRIITNEMVRLIETAAVPILAVD-ASGNVNGWNSKAAELTGLTVDQA----IGT----ALVDLVAGDSVDV 667 (681)
Q Consensus 603 ~~el~~~~~el~~Lie~s~d~I~~vD-~~G~I~~~N~a~~~l~G~~~~El----iGk----~l~~lv~~~~~~~ 667 (681)
+++++...+.+ -......++++| .++...+++..+..++||+++++ +.. .+...++++|...
T Consensus 28 ~~~~~~~~~~~---~~~~~~~~~l~D~~~~~~~~~s~~~~~llG~~~~~~~~~~~~~~~~~~ll~~i~p~D~~~ 98 (258)
T 3clo_A 28 VEQHQQFVRSL---TEVNGGCAVISDLSNRKSYVTVHPWANFLGLTPEEAALSVIDSMDEDCIYRRIHPEDLVE 98 (258)
T ss_dssp HHHHHHHHHHH---HHHHSSEEEEEETTTTEEEEEECTTCGGGCCCHHHHHCCEESSSSCHHHHTTBCHHHHHH
T ss_pred HHHHHHHHHHH---HHHcCCeEEEEEcCCCeEEEEeCCHHHHhCCCcccchHHHHhhhHHHHHHHhCChHHHHH
Confidence 34444444444 334445699999 88999999999999999999987 422 2445667776663
No 142
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=38.30 E-value=15 Score=31.91 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=32.4
Q ss_pred EEEEecC--CceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCch
Q 005722 83 MIAVDEQ--NFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSS 133 (681)
Q Consensus 83 LLa~d~~--~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~ 133 (681)
++++|.. +++|+.++..+..++|.++++ ++|+++..++.+.
T Consensus 48 i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e----------~~g~~~~~l~~~~ 90 (166)
T 3ue6_A 48 FVITDASLPDNPIVYASRGFLTLTGYSLDQ----------ILGRNCRFLQGPE 90 (166)
T ss_dssp EEEEETTSTTCCEEEECHHHHHHHCCCHHH----------HTTSCGGGGCCTT
T ss_pred EEEEEccCCCCcEEEECHHHHHHhCcCHHH----------HcCCCHhheeCCC
Confidence 5677874 689999999999999997654 5788887777543
No 143
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=36.67 E-value=66 Score=30.80 Aligned_cols=42 Identities=12% Similarity=0.235 Sum_probs=32.8
Q ss_pred eEEEEecC--CceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCch
Q 005722 82 CMIAVDEQ--NFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSS 133 (681)
Q Consensus 82 ~LLa~d~~--~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~ 133 (681)
.++++|.. +++|+.++.-+..++|.++++ ++|+++..++.+.
T Consensus 75 ~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~e----------l~g~~~~~l~~~~ 118 (258)
T 3p7n_A 75 ASVVSDPRLADNPLIAINQAFTDLTGYSEEE----------CVGRNCRFLAGSG 118 (258)
T ss_dssp EEEEECTTSTTCCEEEECHHHHHHHCCCGGG----------TTTSCGGGGCCTT
T ss_pred cEEEEcCCCCCCcEEEEhHHHHHHcCCCHHH----------HCCCChhhccCCC
Confidence 45667874 578999999999999998765 4788877776553
No 144
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=36.06 E-value=22 Score=28.25 Aligned_cols=48 Identities=4% Similarity=-0.087 Sum_probs=33.3
Q ss_pred eEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCc--hhhhcCchHHHHHH
Q 005722 82 CMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGID--VRTLFTSSGAAALQ 139 (681)
Q Consensus 82 ~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~--l~~~~~~~~~~~l~ 139 (681)
.++.+|.++++|+.++..+.+++|.++++ ++|.+ +..++.+.....+.
T Consensus 23 ~i~~~d~~~~~i~~~n~~~~~~~g~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 72 (125)
T 3eeh_A 23 ILWEFTADLSEVLVINSAYEDIWGRSVAK----------LRENPHDFLNGIHPEDRELMK 72 (125)
T ss_dssp EEEEEETTSSCEEEECTHHHHHHSSCHHH----------HHHCGGGGGGGBCHHHHHHHH
T ss_pred eEEEEEcCCCcEEEecHHHHHHHCCCHHH----------HccCcHHHHHhcCHHHHHHHH
Confidence 46778887688999999999999997754 24444 45555555444443
No 145
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=34.97 E-value=29 Score=27.20 Aligned_cols=42 Identities=12% Similarity=0.283 Sum_probs=31.4
Q ss_pred eEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCchH
Q 005722 82 CMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSG 134 (681)
Q Consensus 82 ~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~~ 134 (681)
.++++|.+ ++|+.++..+..++|.++++ ++|.++..++.+..
T Consensus 19 ~i~~~d~~-~~i~~~N~~~~~~~g~~~~~----------~~g~~~~~~~~~~~ 60 (124)
T 3lyx_A 19 AIVVTDLQ-GFIIDWNKGSETLYGYSKEQ----------AIGQPVNMLHVPGD 60 (124)
T ss_dssp EEEEEETT-CBEEEECHHHHHHHCCCHHH----------HTTSBGGGGSCTTT
T ss_pred eEEEECCC-CcEeehhhHHHHHhCCCHHH----------HcCCCHHHhcCcch
Confidence 46777874 78999999999999987643 46888776655543
No 146
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=34.13 E-value=58 Score=26.36 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=31.4
Q ss_pred eEEEEecC--CceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCch
Q 005722 82 CMIAVDEQ--NFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSS 133 (681)
Q Consensus 82 ~LLa~d~~--~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~ 133 (681)
.++++|.. +++|+.++..+..++|.++++ ++|+++..++.+.
T Consensus 14 ~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~----------~~g~~~~~~~~~~ 57 (146)
T 2v0u_A 14 NFVITDPRLPDNPIIFASDSFLQLTEYSREE----------ILGRNCRFLQGPE 57 (146)
T ss_dssp CEEEECTTSTTCCEEEECHHHHHHHCCCHHH----------HTTSCGGGGCCTT
T ss_pred cEEEEcCCCCCceEEEEcHHHHHHHCcCHHH----------HcCCCHHHhcCCc
Confidence 35667773 588999999999999987643 4688877776543
No 147
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=32.85 E-value=29 Score=29.73 Aligned_cols=41 Identities=15% Similarity=0.280 Sum_probs=31.7
Q ss_pred eEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCch
Q 005722 82 CMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSS 133 (681)
Q Consensus 82 ~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~ 133 (681)
.++++|. +++|+.++..+..++|.++++ ++|.++..++.+.
T Consensus 52 ~i~~~d~-~g~i~~~N~~~~~l~g~~~~~----------~~g~~~~~~~~~~ 92 (167)
T 1v9y_A 52 GAVLINE-NDEVMFFNPAAEKLWGYKREE----------VIGNNIDMLIPRD 92 (167)
T ss_dssp EEEEECT-TSBEEEECHHHHHHHSCCGGG----------TTTSBGGGGSCGG
T ss_pred CEEEECC-CCcEEEECHHHHHHhCCCHHH----------HcCCChhhccCcc
Confidence 3456776 478999999999999998754 4688888877764
No 148
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=31.49 E-value=26 Score=27.73 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=31.1
Q ss_pred eEEEEec--CCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCc
Q 005722 82 CMIAVDE--QNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTS 132 (681)
Q Consensus 82 ~LLa~d~--~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~ 132 (681)
.++++|. .+++|+.++..+..++|.++++ ++|.++..++.+
T Consensus 18 ~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~----------~~g~~~~~~~~~ 60 (130)
T 2z6d_A 18 TFVVSDATQPHCPIVYASSGFFTMTGYSSKE----------IVGRNCRFLQGP 60 (130)
T ss_dssp EEEEEETTSTTCCEEEECHHHHHHHCCCHHH----------HTTSCGGGGCCT
T ss_pred ceeeeeccCCCCcEEEecHHHHHHhCcCHHH----------HcCCChhhccCC
Confidence 4567773 3588999999999999987643 468887777654
No 149
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=31.15 E-value=37 Score=29.25 Aligned_cols=48 Identities=10% Similarity=0.217 Sum_probs=35.0
Q ss_pred EEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCchH----HHHHHHHh
Q 005722 83 MIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSSG----AAALQKAA 142 (681)
Q Consensus 83 LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~~----~~~l~~~l 142 (681)
++++|..+++|+.++..+..++|.+ + ++|+++.+++++.. ...+++.+
T Consensus 30 i~~~d~~~~~i~~~N~~~~~~~g~~--~----------~~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (158)
T 3k3c_A 30 LVGLEGPDHRFVAVNAAYRGFSPLL--D----------TVGQPAREVYPELEGQQIYEMLDRVY 81 (158)
T ss_dssp EEEEETTTTEEEEECHHHHHHCTTC--C----------STTSBHHHHSGGGGGTTHHHHHHHHH
T ss_pred EEEEECCCcEeHHHHHHHHHHcCCc--h----------hcCCcHHHhCCchhHHHHHHHHHHHH
Confidence 5667834689999999999999987 3 36888888887643 23445554
No 150
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens}
Probab=31.01 E-value=3.3e+02 Score=25.34 Aligned_cols=137 Identities=15% Similarity=0.165 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCCCCcCCCcCCCCCchHHHHHHHHcCCeEEeecCCCCC
Q 005722 215 NISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKVRMICDCLAPP 294 (681)
Q Consensus 215 ~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LGlhfPasDIP~qaR~Ly~~n~vR~I~Dv~~~p 294 (681)
++++..+...+-.+++.|+-=..||-||.+-.- .|-++.-| ||+.-.| +|..-+ +.+|-
T Consensus 13 ~vd~~~~~l~rll~k~~~~~w~~vy~~drerrd--f~~~rs~~--------~pa~~l~-----~~r~mp--l~p~k---- 71 (162)
T 3eea_A 13 DVDEVIKDLSRLLRKLVKTRWIAVYFFDRERRD--FAPARSTG--------LPASFLP-----VFREMP--LAPDK---- 71 (162)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEEEEECC--CS--EEEEEEES--------CCGGGHH-----HHHHCC--BCTTT----
T ss_pred cHHHHHHHHHHHHHHHhCCceEEEEEeehhhhc--cccccccC--------CchhhhH-----HHhhCC--CCCCc----
Confidence 788888889999999999999999999976543 33334334 3443322 222111 11111
Q ss_pred ceee----cCCCCCCCcccccccccCCChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCceeEEEEeecCCCC-
Q 005722 295 VKVI----QDKKLDQPLSLCGSTLRAPHGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWGLVVCHHTSPR- 369 (681)
Q Consensus 295 v~lv----~~~~~~~pldLs~s~LRsvsp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~kLWGLi~cHh~spr- 369 (681)
+|++ .+..---+-|-+.|+| ..|--..+++|+.+-+ +|++++ ++-=|.+.+-....|
T Consensus 72 ~pllk~~lr~~~hll~~dp~~s~l--~tp~l~k~~~~~~ILg---VPL~~g-------------~qVIGVLFaArR~~R~ 133 (162)
T 3eea_A 72 IPLLKSMLRKRQHLMLTDPGSSDL--LTPKLRKLLRNLCVLA---VPMVVR-------------TQVIGAVFMARTRDNP 133 (162)
T ss_dssp CHHHHHHHHHTCCEEESCGGGCTT--SCHHHHHHTTTEEEEE---EEEEET-------------TEEEEEEEEEEETTSC
T ss_pred cHHHHHHHHhcCccccCCCCcchh--ccHHHHHHHhhCeEEE---ecceeC-------------CEEEEEEEEecccccC
Confidence 1111 0000000112233444 5799999999997755 899987 799999999999888
Q ss_pred CCChhHHHHHHHHHHHHHHHH
Q 005722 370 FVPFPLRYACEFLIQVFGVQV 390 (681)
Q Consensus 370 ~v~~~~R~a~e~l~q~~s~ql 390 (681)
..+.+......-|+...+..|
T Consensus 134 ~Fs~dEiALL~SLAahAAIAI 154 (162)
T 3eea_A 134 PFSDAETAIIRDLVSHAALVV 154 (162)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 667665555444444444444
No 151
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=30.74 E-value=45 Score=27.06 Aligned_cols=30 Identities=7% Similarity=-0.042 Sum_probs=25.3
Q ss_pred eEEEEecCCceEEEEccChhhhhCCCCCCC
Q 005722 82 CMIAVDEQNFTVLGYSENAPEMLDLAPHAV 111 (681)
Q Consensus 82 ~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~ 111 (681)
.+..+|..+++++.+|.++.+++|.+++++
T Consensus 5 giw~~d~~~~~~~~~n~~~~~l~G~~~~e~ 34 (115)
T 3h9w_A 5 IPWKINWQTMAFEYIGPQIEALLGWPQGSW 34 (115)
T ss_dssp EEEEEETTTTEEEEECTHHHHHHCSCGGGC
T ss_pred EEEEEEcCCCcEEEEChhHHHHhCCChHHc
Confidence 345678788999999999999999998764
No 152
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=29.26 E-value=1e+02 Score=24.55 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=22.9
Q ss_pred eEEEEecC--CceEEEEccChhhhhCCCCCC
Q 005722 82 CMIAVDEQ--NFTVLGYSENAPEMLDLAPHA 110 (681)
Q Consensus 82 ~LLa~d~~--~~~I~~~SeN~~~~Lg~~~~~ 110 (681)
.++++|.. +++|+.++..+..++|.++++
T Consensus 31 ~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~ 61 (138)
T 2l0w_A 31 KFIIANARVENCAVIYCNDGFCELCGYSRAE 61 (138)
T ss_dssp EEEEEESSSTTCBEEEECSHHHHHHSCCHHH
T ss_pred CEEEEecCCCCCEEEEeCHHHHHHhCCCHHH
Confidence 35667773 588999999999999987643
No 153
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=28.99 E-value=3.9e+02 Score=25.57 Aligned_cols=119 Identities=11% Similarity=0.050 Sum_probs=63.0
Q ss_pred HHHhcCCCCC-HHHHHHHHHHHHHHhhCCCEEEEEEecCCCCeEEEEeecCCCCCCcCCCcCCCCCchHHHHHHHHcCCe
Q 005722 206 SRLQSLPSGN-ISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHGEVVAECRRPDLEPYLGFHYPATDIPQASRFLIMKNKV 284 (681)
Q Consensus 206 ~rl~~~~~~~-l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~GeVVAEs~~~~l~s~LGlhfPasDIP~qaR~Ly~~n~v 284 (681)
.++.. +.+ .+++.+.+ +.+.+..|||++..+.+. .+ ..++ .+..|....+.|..+..
T Consensus 11 ~~l~~--a~~~~~~l~~~l-~~~~~~~gf~~~~y~~~~------------~~--~~~~-----~~~~p~~w~~~Y~~~~y 68 (236)
T 2q0o_A 11 IDMLE--AAQDGHMIKIAL-RSFAHSCGYDRFAYLQKD------------GT--QVRT-----FHSYPGPWESIYLGSDY 68 (236)
T ss_dssp HHHHH--HCCSHHHHHHHH-HHHHHHHTCCEEEEEEEE------------TT--EEEE-----EECSCHHHHHHHHHTTG
T ss_pred HHHHH--ccCcHHHHHHHH-HHHHHHhCCCeEEEEecC------------CC--ceEE-----EeCCCHHHHHHHHHCCC
Confidence 55655 336 78887775 555556999999877521 11 0111 23446677788877653
Q ss_pred EEeecCCCCCceeec-CCCCCCCcccccccccC-C---ChHHHHHHHhcCCeeEEEEEEEecCccccccccccccCceeE
Q 005722 285 RMICDCLAPPVKVIQ-DKKLDQPLSLCGSTLRA-P---HGCHARYMENMGSIASLVMSVTINEAEDELDNDQEQGRKLWG 359 (681)
Q Consensus 285 R~I~Dv~~~pv~lv~-~~~~~~pldLs~s~LRs-v---sp~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~~kLWG 359 (681)
..+ .| ++. ......|..-+....+. . .+-..++.+.+|+...+++|+.-. +..+|
T Consensus 69 ~~~-----DP--v~~~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~a~~~gl~~G~~~p~~~~-------------~~~~g 128 (236)
T 2q0o_A 69 FNI-----DP--VLAEAKRRRDVFFWTADAWPARGSSPLRRFRDEAISHGIRCGVTIPVEGS-------------YGSAM 128 (236)
T ss_dssp GGT-----CH--HHHHHHHCCSCEEEESTTSCCSSCCHHHHHHHHHHHTTCCEEEEEEEECG-------------GGCEE
T ss_pred ccc-----CH--HHHHHhCCCCCEEecCcccccccCHHHHHHHHHHHHcCCCceEEEEEEcC-------------CCCeE
Confidence 211 11 110 00001111111111111 1 123346677999999999999854 45678
Q ss_pred EEEeecC
Q 005722 360 LVVCHHT 366 (681)
Q Consensus 360 Li~cHh~ 366 (681)
++.....
T Consensus 129 ~ls~~~~ 135 (236)
T 2q0o_A 129 MLTFASP 135 (236)
T ss_dssp EEEEEES
T ss_pred EEEEecC
Confidence 7765443
No 154
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=27.05 E-value=92 Score=29.23 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=30.4
Q ss_pred EEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCc
Q 005722 83 MIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTS 132 (681)
Q Consensus 83 LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~ 132 (681)
++++|. +++|+.++..+.+++|.++++ ++|++...+..+
T Consensus 2 i~i~D~-~g~i~~~N~a~~~l~Gy~~~e----------l~G~~~~~~~~~ 40 (227)
T 3ewk_A 2 VSITDL-QGRILYANDNFCAVSRYGREE----------LVGQDHRIVNSG 40 (227)
T ss_dssp EEEEET-TCBEEEECHHHHHHTTCCHHH----------HTTSBGGGGCCS
T ss_pred EEEECC-CCcEEehHHHHHHHHCcCHHH----------HcCCCHHHcCCC
Confidence 456776 488999999999999998764 578887766543
No 155
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=26.88 E-value=37 Score=28.46 Aligned_cols=41 Identities=12% Similarity=0.331 Sum_probs=31.4
Q ss_pred eEEEEecCCceEEEEccChhhhhC------------CCCCCCCCccccchhccCCchhhhcCch
Q 005722 82 CMIAVDEQNFTVLGYSENAPEMLD------------LAPHAVPNIEQQDALTLGIDVRTLFTSS 133 (681)
Q Consensus 82 ~LLa~d~~~~~I~~~SeN~~~~Lg------------~~~~~~~~~~~~~~~~lG~~l~~~~~~~ 133 (681)
.++++|.+ ++|+.+...+..+|| ++++ .++|+++..++..+
T Consensus 17 gviv~D~~-g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~----------~~~G~~~~~~~~~~ 69 (121)
T 4hi4_A 17 NVMIADND-LNIIYMNRTVSEMLGRAEADIRKQLPNFDAG----------RLMGANIDVFHKNP 69 (121)
T ss_dssp EEEEEETT-CBEEEECHHHHHHHHHTHHHHHHHCTTCCGG----------GCTTCBGGGGCSSH
T ss_pred cEEEEcCC-CeEEEecHHHHHHHHHHHHHHHHhcCCCChH----------HhcCCCHHHhcCCH
Confidence 35678875 889999999999997 4433 35899999988654
No 156
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=26.79 E-value=81 Score=26.91 Aligned_cols=41 Identities=10% Similarity=0.078 Sum_probs=30.6
Q ss_pred eEEEEecCC--ceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCc
Q 005722 82 CMIAVDEQN--FTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTS 132 (681)
Q Consensus 82 ~LLa~d~~~--~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~ 132 (681)
.++++|.+. ++|+.++..+..++|.+.++ ++|.++..++.+
T Consensus 37 ~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~----------~~g~~~~~~~~~ 79 (162)
T 3sw1_A 37 GIVVAEKEGDDTILIYVNAAFEYLTGYSRDE----------ILYQDCRFLQGD 79 (162)
T ss_dssp EEEEEEEETTEEEEEEECHHHHHHHTCCHHH----------HTTSBGGGGTTT
T ss_pred cEEEEeCCCCccEEEEECHHHHHHHCCCHHH----------HcCCCcceecCC
Confidence 356777753 18999999999999987643 478888777654
No 157
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=25.64 E-value=71 Score=30.86 Aligned_cols=41 Identities=12% Similarity=0.361 Sum_probs=32.4
Q ss_pred eEEEEecCCceEEEEccChhhhh------------CCCCCCCCCccccchhccCCchhhhcCch
Q 005722 82 CMIAVDEQNFTVLGYSENAPEML------------DLAPHAVPNIEQQDALTLGIDVRTLFTSS 133 (681)
Q Consensus 82 ~LLa~d~~~~~I~~~SeN~~~~L------------g~~~~~~~~~~~~~~~~lG~~l~~~~~~~ 133 (681)
.++++|.+ ++|+.+...+..+| |+++++ ++|+++..++..+
T Consensus 34 ~vii~D~~-g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~e----------liG~~~~~~~~~~ 86 (233)
T 3vol_A 34 NVMIADND-LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGR----------LMGANIDVFHKNP 86 (233)
T ss_dssp EEEEEETT-SBEEEECHHHHHHHHHTHHHHHTTCTTCCTTS----------CTTCBGGGGSSSH
T ss_pred cEEEECCC-CcEEEecHHHHHHHHHHHHHHHhhcCCCCHHH----------HcCCCHHHHcCCH
Confidence 35678885 89999999999999 566554 5899999888654
No 158
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=24.98 E-value=33 Score=24.92 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=18.2
Q ss_pred hHHhhhccccCCCCHHHHHHH
Q 005722 548 AFLEVVKQRSLPWEDVEMDAI 568 (681)
Q Consensus 548 ~w~E~v~~~s~pW~~~Ei~aa 568 (681)
+|...+..|-+||++.|++++
T Consensus 11 ~~~~ei~~RNrpltDEeLD~m 31 (39)
T 3lqv_P 11 RWEREIDERNRPLSDEELDAM 31 (39)
T ss_dssp HHHHHHHHTTCCCCHHHHHHT
T ss_pred HhhccchhhcCCCCHHHHHHh
Confidence 588888899999999999874
No 159
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=24.34 E-value=83 Score=31.37 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=32.2
Q ss_pred eEEEEec--CCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCc
Q 005722 82 CMIAVDE--QNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTS 132 (681)
Q Consensus 82 ~LLa~d~--~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~ 132 (681)
.++++|. ++++|+.++..+..++|.++++ ++|+++..++.+
T Consensus 23 ~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~e----------l~G~~~~~l~~~ 65 (332)
T 2wkq_A 23 NFVITDPRLPDNPIIFASDSFLQLTEYSREE----------ILGRNARFLQGP 65 (332)
T ss_dssp EEEEECTTSTTCCEEEECHHHHHHHCCCHHH----------HTTSCGGGGCCT
T ss_pred cEEEecCCCCCCCEEEeehHHHHHhCCCHHH----------HcCCCchhhcCC
Confidence 3566787 2588999999999999998754 578888877764
No 160
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=23.91 E-value=84 Score=28.27 Aligned_cols=54 Identities=17% Similarity=0.287 Sum_probs=37.3
Q ss_pred CceEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCc-----hHHHHHHHHhccC
Q 005722 80 FGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTS-----SGAAALQKAANFG 145 (681)
Q Consensus 80 ~G~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~-----~~~~~l~~~l~~~ 145 (681)
+| ++++|.+ ++|+.+..-.+.+.|+++++ .+|+++-+.+.+ .....+++.+..+
T Consensus 28 ~G-ii~lD~~-g~I~~~N~~~e~~sG~~~~e----------viGk~~f~~~~~~~~~~~f~~rf~~~~~~g 86 (125)
T 1nwz_A 28 FG-AIQLDGD-GNILQYNAAEGDITGRDPKQ----------VIGKNFFKDVAPCTDSPEFYGKFKEGVASG 86 (125)
T ss_dssp SE-EEEEETT-CBEEEECHHHHHHHCCCHHH----------HTTSBCCCCCCGGGCSTTTHHHHHHHHHHT
T ss_pred ce-EEEECCC-CEEEEEHHHHHHHhCCCHHH----------HcCCchhhhccchhcccHHHHHHHHHHhcC
Confidence 45 4668885 89999999999999999875 578887553322 3344455555433
No 161
>3ub6_A Chemoreceptor TLPB; homodimer, four-helix bundle, PAS domain, membrane protein; 1.38A {Helicobacter pylori} PDB: 3ub7_A 3ub8_A 3ub9_A*
Probab=23.51 E-value=2.2e+02 Score=26.63 Aligned_cols=45 Identities=24% Similarity=0.186 Sum_probs=32.8
Q ss_pred cEEEEcCCCceeeecHHhHHhcCCC-hhhhhcCcccccccCCCHHHHHHHHHHHHc
Q 005722 623 PILAVDASGNVNGWNSKAAELTGLT-VDQAIGTALVDLVAGDSVDVVKNMLSSAFL 677 (681)
Q Consensus 623 ~I~~vD~~G~I~~~N~a~~~l~G~~-~~EliGk~l~~lv~~~~~~~~~~~l~~al~ 677 (681)
=+|+.|.+|.++.- + ..+++|+++.++-.+.-...++.++..+..
T Consensus 71 Y~fv~d~~g~~l~h----------P~~p~l~Gk~~~~~~D~~G~~~~~~~~~~a~~ 116 (181)
T 3ub6_A 71 YMVVVDKNGVVLFD----------PVNPKTVGQSGLDAQSVDGVYYVRGYLEAAKK 116 (181)
T ss_dssp EEEEECTTCBEEEC----------TTSGGGTTSBCTTCCCTTSCCHHHHHHHHHHT
T ss_pred EEEEEeCCCCEEEe----------CCChhhcCCccccccCCCccHHHHHHHHHHhc
Confidence 46889999988762 3 467899999887666666667777776644
No 162
>3qp1_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 1.55A {Chromobacterium violaceum} PDB: 3qp2_A* 3qp4_A* 3qp8_A*
Probab=22.51 E-value=4.6e+02 Score=24.15 Aligned_cols=131 Identities=10% Similarity=0.011 Sum_probs=76.1
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhCCCEEEEEEecCCCCe--EEEEeecCCCCCCcCCCcCCCCCchHHHHHH
Q 005722 201 AAKAISRLQSLPSGNISLLCDVLVNEVSDLTGYDRVMVYKFHEDEHG--EVVAECRRPDLEPYLGFHYPATDIPQASRFL 278 (681)
Q Consensus 201 ~~~~i~rl~~~~~~~l~~l~~~~v~evr~ltg~DRVmiYrF~~D~~G--eVVAEs~~~~l~s~LGlhfPasDIP~qaR~L 278 (681)
+..++.+++. +.+.+++.+. +..+.+.+|||+++...-.....| +.+.. ++ .+..|+...+.
T Consensus 19 l~~~~~~l~~--a~s~~~l~~~-l~~~~~~~Gf~~~~y~~~~~~~~~~~~~~~~--------~~-----~~nyP~~W~~~ 82 (182)
T 3qp1_A 19 LLEWIHMAGH--IETENELKAF-LDQVLSQAPSERLLLALGRLNNQNQIQRLER--------VL-----NVSYPSDWLDQ 82 (182)
T ss_dssp HHHHHHHHTT--CCSHHHHHHH-HHHHHTTSSCSEEEEEEEEECTTSCEEEEEE--------EE-----ESSSCHHHHHH
T ss_pred HHHHHHHHHh--cCCHHHHHHH-HHHHHHhcCCCeEEEEeecCCCcccccchhh--------hh-----hcCCCHHHHHH
Confidence 4567888888 4588888776 456778899999987543221111 21100 11 23456788999
Q ss_pred HHcCCeEEeecCCCCCceeec-CCCCCCCcccccccccCCCh---HHHHHHHhcCCeeEEEEEEEecCcccccccccccc
Q 005722 279 IMKNKVRMICDCLAPPVKVIQ-DKKLDQPLSLCGSTLRAPHG---CHARYMENMGSIASLVMSVTINEAEDELDNDQEQG 354 (681)
Q Consensus 279 y~~n~vR~I~Dv~~~pv~lv~-~~~~~~pldLs~s~LRsvsp---~H~qYL~NMGV~ASlsvsIiv~~~~~~~~~~~~~~ 354 (681)
|..+..-.|. |++. .. ...|+.=+....+..++ --.+..+.+|++..+++||.-- .
T Consensus 83 Y~~~~y~~~D-------Pvv~~~~-~~~p~~W~~~~~~~~~~~~~~~~~~a~~~Gl~~G~tvp~~~~------------~ 142 (182)
T 3qp1_A 83 YMKENYAQHD-------PILRIHL-GQGPVMWEERFNRAKGAEEKRFIAEATQNGMGSGITFSAASE------------R 142 (182)
T ss_dssp HHHTTGGGTC-------GGGGSCT-TSCCEEHHHHHHTCCSHHHHHHHHHHHHTTCSSEEEEEEEET------------T
T ss_pred HHHCCCcccC-------cchHhhc-CCCCEecCchhhcccChHHHHHHHHHHHcCCCceEEEEeecC------------C
Confidence 9988753221 2221 11 22333322222222233 3345567899999999999742 1
Q ss_pred CceeEEEEeecCC
Q 005722 355 RKLWGLVVCHHTS 367 (681)
Q Consensus 355 ~kLWGLi~cHh~s 367 (681)
+...|+++.-...
T Consensus 143 ~g~~g~ls~a~~~ 155 (182)
T 3qp1_A 143 NNIGSILSIAGRE 155 (182)
T ss_dssp TTEEEEEEEESST
T ss_pred CCcEEEEEEecCC
Confidence 4678988876544
No 163
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=22.50 E-value=1e+02 Score=27.97 Aligned_cols=53 Identities=15% Similarity=0.200 Sum_probs=37.1
Q ss_pred CceEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCc-----hHHHHHHHHhcc
Q 005722 80 FGCMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTS-----SGAAALQKAANF 144 (681)
Q Consensus 80 ~G~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~-----~~~~~l~~~l~~ 144 (681)
+| ++++|.+ ++|+.+..-.+.+.|+++++ .+|+++-+.+.+ .....+++.+..
T Consensus 33 ~G-iivlD~d-g~I~~~N~~~e~isG~s~ee----------viGk~~f~~~~p~~~~~~f~grf~~~~~~ 90 (129)
T 1mzu_A 33 VG-AIQVDGS-GVIHRYNRTESRLSGRIPER----------VIGRNFFTEVAPCTNIPAFSGRFMDGVTS 90 (129)
T ss_dssp SE-EEEEETT-CBEEEECHHHHHHHCCCHHH----------HTTSBCCCCCCGGGCSTTTHHHHHHHHHT
T ss_pred ce-EEEECCC-CeEEEEHHHHHHHhCCCHHH----------HcCCchhhhccchhcccHHHHHHHHHHhc
Confidence 44 4668885 89999999999999999875 578887553322 334455655543
No 164
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=21.85 E-value=73 Score=28.79 Aligned_cols=49 Identities=10% Similarity=0.180 Sum_probs=35.5
Q ss_pred eEEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCch----HHHHHHHHh
Q 005722 82 CMIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSS----GAAALQKAA 142 (681)
Q Consensus 82 ~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~----~~~~l~~~l 142 (681)
.++++|..+++|+.++..+..++|.+ + ++|+++.+++++. ....+++.+
T Consensus 49 ~i~~~d~~~g~i~~~N~a~~~l~G~~--~----------~~G~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
T 3kx0_X 49 ILVGLEGPDHRFVAVNAAYRGFSPLL--D----------TVGQPAREVYPELEGQQIYEMLDRVY 101 (185)
T ss_dssp EEEEEETTTTEEEEECHHHHHHCCCC--S----------CTTSBHHHHCTTSCSSSSHHHHHHHH
T ss_pred eEEEEECCCcEEEEEcHHHHHHcCCc--c----------ccCCcHHHHCCchhhhhHHHHHHHHH
Confidence 35678834689999999999999987 3 3688888887653 234455554
No 165
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=21.67 E-value=25 Score=28.13 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=31.6
Q ss_pred EEEEecCCceEEEEccChhhhhCC---CCCCCCCccccchhccCCchhhhcCchH
Q 005722 83 MIAVDEQNFTVLGYSENAPEMLDL---APHAVPNIEQQDALTLGIDVRTLFTSSG 134 (681)
Q Consensus 83 LLa~d~~~~~I~~~SeN~~~~Lg~---~~~~~~~~~~~~~~~lG~~l~~~~~~~~ 134 (681)
++++|.+ ++|+.+...+..++|. ++++ ++|+++.+++.+..
T Consensus 28 i~~~d~~-g~i~~~N~~~~~~~g~~~~~~~~----------~~g~~~~~~~~~~~ 71 (118)
T 2w0n_A 28 VVAVDDR-GEVTLINDAAQELLNYRKSQDDE----------KLSTLSHSWSQVVD 71 (118)
T ss_dssp CEEEBTT-TBCCCBCHHHHHHHCSCTTTTTS----------SCCCTTCCCSCTHH
T ss_pred EEEECCC-CcEeehhHHHHHHhCCCccChhh----------hhccCcccccCchh
Confidence 4678875 7899999999999996 5544 47888888877643
No 166
>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 3pd2_A* 2hl1_A* 3pd3_A* 3pd4_A* 3pd5_A*
Probab=21.51 E-value=93 Score=28.87 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHHh---hCCCEEEEEEecC
Q 005722 215 NISLLCDVLVNEVSDL---TGYDRVMVYKFHE 243 (681)
Q Consensus 215 ~l~~l~~~~v~evr~l---tg~DRVmiYrF~~ 243 (681)
+.+.+...+|++|+.+ +|.+|||+|-|..
T Consensus 52 ~~~~vv~~av~eI~~~a~kv~~~~ivlYPyAH 83 (143)
T 2hl0_A 52 NPEEVSLKAIEEISKVAEQVKAENVFVYPFAH 83 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCEEEEEECGG
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 4466777777777665 6899999999973
No 167
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=20.46 E-value=92 Score=24.66 Aligned_cols=29 Identities=7% Similarity=0.081 Sum_probs=23.0
Q ss_pred eEEEEecCCceEEEEccChhhhhCCCCCCC
Q 005722 82 CMIAVDEQNFTVLGYSENAPEMLDLAPHAV 111 (681)
Q Consensus 82 ~LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~ 111 (681)
.+..+|.+ +.++.++..+.+++|.+++++
T Consensus 19 ~i~~~d~~-~~~~~~n~~~~~~~G~~~~~~ 47 (125)
T 3nja_A 19 GSWVLHME-SGRLEWSQAVHDIFGTDSATF 47 (125)
T ss_dssp EEEEEETT-TTEEEECHHHHHHHTCCTTTC
T ss_pred eEEEEEcC-CCcEEECHHHHHHhCCCcccc
Confidence 35567876 557889999999999988764
No 168
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=20.09 E-value=37 Score=30.88 Aligned_cols=40 Identities=10% Similarity=0.016 Sum_probs=32.3
Q ss_pred EEEEecCCceEEEEccChhhhhCCCCCCCCCccccchhccCCchhhhcCch
Q 005722 83 MIAVDEQNFTVLGYSENAPEMLDLAPHAVPNIEQQDALTLGIDVRTLFTSS 133 (681)
Q Consensus 83 LLa~d~~~~~I~~~SeN~~~~Lg~~~~~~~~~~~~~~~~lG~~l~~~~~~~ 133 (681)
++++|.+ ++|+.+..-+..+||.++++ ++|+++.+++...
T Consensus 93 vi~~D~~-g~I~~~N~aa~~llg~~~~~----------~~g~~~~~~~~~~ 132 (190)
T 2jhe_A 93 VLSVDMK-SKVDMANPASCQLFGQKLDR----------LRNHTAAQLINGF 132 (190)
T ss_dssp EEEECTT-CBEEEECHHHHHHHTSCHHH----------HTTSBGGGTSTTC
T ss_pred EEEEcCC-CCEEEEcHHHHHHhCCCHHH----------hcCccHHHHhCCC
Confidence 5788875 88999999999999986533 5799998888754
Done!