BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005723
(681 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224084664|ref|XP_002307379.1| predicted protein [Populus trichocarpa]
gi|222856828|gb|EEE94375.1| predicted protein [Populus trichocarpa]
Length = 680
Score = 1230 bits (3182), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/681 (87%), Positives = 628/681 (92%), Gaps = 1/681 (0%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
MSG GCSIVWFRRDLRVEDNPALAAGVRAGAV+AVF+WAPEEEG YYPGRVSRWWLK SL
Sbjct: 1 MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HLDSSLRSLGTSLVTKRSTDSVSSLLEVVK+TGATQL FNHLYDPLSLVRDHRAKE LT
Sbjct: 61 AHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKSTGATQLLFNHLYDPLSLVRDHRAKEILT 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
AQGI VRSFNADLLYEPWDVNDAQG+PF TF FWE+CLSMPFDP+APLLPPKRI SGD+
Sbjct: 121 AQGITVRSFNADLLYEPWDVNDAQGRPFTTFDTFWERCLSMPFDPEAPLLPPKRIISGDV 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
SRCPS TLVFEDESEKGSNALLARAWSPGWSNAD+ALTTFINGPLIEYS NRRKADSATT
Sbjct: 181 SRCPSVTLVFEDESEKGSNALLARAWSPGWSNADRALTTFINGPLIEYSMNRRKADSATT 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
SFLSPHLHFGEVSVRKVFHLVRIKQV WANEGN+AG+ESVNLF+KSIGLREYSRY+SFNH
Sbjct: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNRAGEESVNLFIKSIGLREYSRYLSFNH 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P +HERPLLGHLKFF WVVDEGYFKAWRQGRTGYPLVDAGMRELWA GWLHDRIRVVV+S
Sbjct: 301 PCTHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWAAGWLHDRIRVVVAS 360
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFD
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFD 420
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP PIV IDAAK RL+EA
Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLEEA 480
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYED 540
LSEMWQQEAASRAAIENGTEEGLGDSS+SAP AFP DI MEE EP RNN P T RRYED
Sbjct: 481 LSEMWQQEAASRAAIENGTEEGLGDSSESAPFAFPEDIHMEENHEPVRNNPPATNRRYED 540
Query: 541 QMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNN 600
QMVPSMT+S +R+E+EE+S ++RNS + RAEVPR+ NVNQEPRRD LNQG +QTV NN
Sbjct: 541 QMVPSMTSSFLRIEDEETS-DVRNSTGDGRAEVPRDVNVNQEPRRDALNQGFVQTVRNNT 599
Query: 601 AFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGTSSS 660
A FN + L N EDSTAESSS+ RRERDGG+VPVWSP TSSYSEQ VGD+NGIG +SS
Sbjct: 600 ALSPFNISRGLTNVEDSTAESSSSGRRERDGGIVPVWSPPTSSYSEQFVGDDNGIGATSS 659
Query: 661 YLQRHPQSHQIMNCRRLSQTG 681
YLQRHPQSHQI+N RRLSQTG
Sbjct: 660 YLQRHPQSHQIINWRRLSQTG 680
>gi|340007733|gb|AEK26572.1| cryptochrome 1.2 [Populus tremula]
Length = 681
Score = 1226 bits (3171), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/681 (87%), Positives = 636/681 (93%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
MSG GCSIVWFRRDLRVEDNPALAAGVRAGAV+AVF+WAPEEEG YYPGRVSRWWLK SL
Sbjct: 1 MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HLDSSLRSLGTSLVTKRSTDSVS+LLEV+K+TGATQLFFNHLYDPLSLVRDHRAKE LT
Sbjct: 61 AHLDSSLRSLGTSLVTKRSTDSVSTLLEVIKSTGATQLFFNHLYDPLSLVRDHRAKEVLT 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
AQGIAVRSFNADLLYEPWDVNDAQG+PF TFA FW++CLSMPFDP+APLLPPKRI SGD
Sbjct: 121 AQGIAVRSFNADLLYEPWDVNDAQGRPFTTFATFWDRCLSMPFDPEAPLLPPKRIISGDA 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
SRCPS+ LVFEDESEKGSNALLARAWSPGWSNAD+ALTTFINGPLIEYSKNRRKADSATT
Sbjct: 181 SRCPSEMLVFEDESEKGSNALLARAWSPGWSNADRALTTFINGPLIEYSKNRRKADSATT 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
SFLSPHLHFGEVSVRKVFHLVRIKQV WANEGNKAG+ESVNLFLKSIGLREYSRY+SFNH
Sbjct: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYLSFNH 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
PYSHERPLLGHLKFF WVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV+S
Sbjct: 301 PYSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVAS 360
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PDGR FDRIDNPQFEGYKFD
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDGREFDRIDNPQFEGYKFD 420
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
PNGEYVRRWLPELARLPT+WIHHPWNAPESVLQAAGIELGSNYP PIV IDAAK RL+EA
Sbjct: 421 PNGEYVRRWLPELARLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLEEA 480
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYED 540
LSEMWQQEAASRAAIENGTEEGLGDSS+SAPIAFP DI MEE EP RNN P T RRYED
Sbjct: 481 LSEMWQQEAASRAAIENGTEEGLGDSSESAPIAFPQDINMEENHEPVRNNPPATNRRYED 540
Query: 541 QMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNN 600
QMVPSMT+S +R+E+EE+S ++RNS + RAEVPR+ N+NQ+PRRDTLNQG +Q+VHN+N
Sbjct: 541 QMVPSMTSSFLRIEDEETSSDVRNSTGDGRAEVPRDVNLNQQPRRDTLNQGFVQSVHNDN 600
Query: 601 AFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGTSSS 660
+ FN LAN EDSTAESSS+SRRERDGG+VPVWSP T SYSEQ VGDENGIG +SS
Sbjct: 601 SLPPFNILRGLANVEDSTAESSSSSRRERDGGIVPVWSPPTPSYSEQFVGDENGIGATSS 660
Query: 661 YLQRHPQSHQIMNCRRLSQTG 681
YL RHPQSHQI+N RRL QTG
Sbjct: 661 YLPRHPQSHQILNWRRLPQTG 681
>gi|224063235|ref|XP_002301054.1| predicted protein [Populus trichocarpa]
gi|222842780|gb|EEE80327.1| predicted protein [Populus trichocarpa]
Length = 681
Score = 1225 bits (3170), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 597/681 (87%), Positives = 634/681 (93%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
MSG GCSIVWFRRDLRVEDNPALAAGVRAGAV+AVF+WAPEEEG YYPGRVSRWWLK SL
Sbjct: 1 MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HLDSSLRSLGTSLVTKRSTDSVS+LLEV+K+TGATQLFFNHLYDPLSLVRDHRAKE LT
Sbjct: 61 AHLDSSLRSLGTSLVTKRSTDSVSTLLEVIKSTGATQLFFNHLYDPLSLVRDHRAKEVLT 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
AQGIAVRSFNADLLYEPWDVNDAQG+PF TFA FW++CLSMPFDP+APLLPPKRI SGD
Sbjct: 121 AQGIAVRSFNADLLYEPWDVNDAQGRPFTTFATFWDRCLSMPFDPEAPLLPPKRIISGDA 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
SRCPS+ LVFEDE EKGSNALLARAWSPGWSNAD+ALTTFINGPLIEYSKNRRKADSATT
Sbjct: 181 SRCPSEMLVFEDELEKGSNALLARAWSPGWSNADRALTTFINGPLIEYSKNRRKADSATT 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
SFLSPHLHFGEVSVRKVFHLVRIKQV WANEGNKAG+ESVNLFLKSIGLREYSRY+SFNH
Sbjct: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYLSFNH 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
PYSHERPLLGHLKFF WVVD GYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV+S
Sbjct: 301 PYSHERPLLGHLKFFPWVVDGGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVAS 360
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PDGR FDRIDNPQFEGYKFD
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDGREFDRIDNPQFEGYKFD 420
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP PIV IDAAK RL+EA
Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLEEA 480
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYED 540
LSEMWQQEAASRAAIENGTEEGLGDSS+SAPIAFP DI MEE EP RNN P T RRYED
Sbjct: 481 LSEMWQQEAASRAAIENGTEEGLGDSSESAPIAFPQDINMEENHEPVRNNPPATNRRYED 540
Query: 541 QMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNN 600
QMVPSMT+S +R+E+EE+S ++RNS + RAEVPR+ NVNQ+PRRDTLNQG +Q+VHN+N
Sbjct: 541 QMVPSMTSSFLRIEDEETSSDVRNSTGDGRAEVPRDVNVNQQPRRDTLNQGFVQSVHNDN 600
Query: 601 AFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGTSSS 660
+ FN LAN EDSTAESSS+SRRERDGG+VPVWSP SSYSEQ VGDENGIG +SS
Sbjct: 601 SLPPFNVVRGLANVEDSTAESSSSSRRERDGGIVPVWSPPASSYSEQFVGDENGIGATSS 660
Query: 661 YLQRHPQSHQIMNCRRLSQTG 681
YL RHPQSHQI+N RRL QTG
Sbjct: 661 YLPRHPQSHQILNWRRLPQTG 681
>gi|340007731|gb|AEK26571.1| cryptochrome 1.1 [Populus tremula]
Length = 681
Score = 1215 bits (3144), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/681 (87%), Positives = 630/681 (92%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
MSG GCSIVWFRRDLRVEDNPALAAGVRAGAV+AVF+WAPEEEG YYPGRVSRWWLK SL
Sbjct: 1 MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
++LDSSLRSLGTSLVTKRSTDSVS+LLEVVK+TGATQL FNHLYDPLSLVRDHRAKE LT
Sbjct: 61 AYLDSSLRSLGTSLVTKRSTDSVSTLLEVVKSTGATQLLFNHLYDPLSLVRDHRAKEILT 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
AQGI VRSFNADLLYEPWDVNDAQG+PF TF FWE+CLSMPFDP+APLLPPKRI SGD+
Sbjct: 121 AQGITVRSFNADLLYEPWDVNDAQGRPFTTFDTFWERCLSMPFDPEAPLLPPKRIISGDV 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
SRCPS TLVFEDESEKGSNALLARAWSPGWSNAD+ALTTFINGPLIEYS NRRKADSATT
Sbjct: 181 SRCPSVTLVFEDESEKGSNALLARAWSPGWSNADRALTTFINGPLIEYSMNRRKADSATT 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
SFLSPHLHFGEVSVRKVFHLVRIKQV WANEGNKAG+ESVNLF+KSIGLREYSRY+SFNH
Sbjct: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFIKSIGLREYSRYLSFNH 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
PY+HERPLLGHLKFF WVVDEGYFKAWRQGRTGYPLVDAGMRELWA GWLHDRIRVVV+S
Sbjct: 301 PYTHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWAAGWLHDRIRVVVAS 360
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFD
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDCREFDRIDNPQFEGYKFD 420
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP PIV IDAAK RL+EA
Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLEEA 480
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYED 540
LSEMWQQEAASRAAIENGTEEGLGDSS+SAPIAFP DI MEE EP RNN P T RRYED
Sbjct: 481 LSEMWQQEAASRAAIENGTEEGLGDSSESAPIAFPEDILMEENHEPVRNNPPATNRRYED 540
Query: 541 QMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNN 600
QMVPSMT+S +R+E+EE+S ++RNS + RAEVPR+ NVNQEPRRD LNQG +QTV NN
Sbjct: 541 QMVPSMTSSFLRIEDEETSSDVRNSTGDGRAEVPRDVNVNQEPRRDALNQGFVQTVRNNT 600
Query: 601 AFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGTSSS 660
A FN L N EDSTAESSS+SRRERDGG+VPVWSP TSSYSEQ VGD++GIG +SS
Sbjct: 601 ALSPFNILRGLTNVEDSTAESSSSSRRERDGGIVPVWSPPTSSYSEQFVGDDSGIGATSS 660
Query: 661 YLQRHPQSHQIMNCRRLSQTG 681
YLQRHPQSHQI+N RRLSQTG
Sbjct: 661 YLQRHPQSHQIINWRRLSQTG 681
>gi|161898816|gb|ABX80391.1| cryptochrome 1 [Vitis riparia]
Length = 681
Score = 1201 bits (3106), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 595/683 (87%), Positives = 630/683 (92%), Gaps = 4/683 (0%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
MSG GCSIVWFRRDLRVEDNPALAAGVRAGAVI VFIWAPEEEGPYYPGRVSRWWLK SL
Sbjct: 1 MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVIPVFIWAPEEEGPYYPGRVSRWWLKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HLDSSLRSLGT L+TKRSTD VSSLLE+VK+TGAT LFFNHLYDPLSLVRDHRAKEALT
Sbjct: 61 AHLDSSLRSLGTPLITKRSTDCVSSLLEIVKSTGATLLFFNHLYDPLSLVRDHRAKEALT 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
AQGIAV SFNADLLYEPWDVNDAQG F TF+AFW++CLSMP+DP+APLLPPKRIN GD+
Sbjct: 121 AQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRINPGDV 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
SRCPSDT+ FEDESEKGSNALLARAW+PGWSNADKALT FINGPLIEYSKN RKADSATT
Sbjct: 181 SRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKADSATT 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
SFLSPHLHFGEVSVRKVFHLVRIKQV WANEGNKAG+ESVNLFLKSIGLREYSRY+SFNH
Sbjct: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYLSFNH 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
PYSHERPLLGHLKFF WVVDEGYFKAWRQGRTGYPLVDAGMRELWATGW+HDRIRVVVSS
Sbjct: 301 PYSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRIRVVVSS 360
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGT+PDGR FDRIDNPQFEGYKFD
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKFD 420
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP PIV IDAAK RL EA
Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAKARLQEA 480
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTA-RRYE 539
LSEMWQ AASRAAIENGTEEGLGD S+SAPIAFP D+QMEEIPEP RNN TTA RRYE
Sbjct: 481 LSEMWQAVAASRAAIENGTEEGLGD-SESAPIAFPQDVQMEEIPEPVRNNPTTTAVRRYE 539
Query: 540 DQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVH-N 598
DQMVPSMT+S +R+ E E SL+++NSAE SRAEVP N N NQEPRR+TLN+GV TV N
Sbjct: 540 DQMVPSMTSSFLRI-EGEPSLDIQNSAENSRAEVPTNVNANQEPRRETLNRGVAHTVRSN 598
Query: 599 NNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGTS 658
N+ QFN I AEDSTAESSST+RRERDGGVVPVWSP+TSSY+EQ V +ENGIGTS
Sbjct: 599 NHNLPQFNIMIGRNTAEDSTAESSSTTRRERDGGVVPVWSPSTSSYAEQFVSEENGIGTS 658
Query: 659 SSYLQRHPQSHQIMNCRRLSQTG 681
SSYLQRHP+SHQ+MN ++LSQTG
Sbjct: 659 SSYLQRHPRSHQLMNWKQLSQTG 681
>gi|302141959|emb|CBI19162.3| unnamed protein product [Vitis vinifera]
Length = 691
Score = 1199 bits (3103), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/683 (86%), Positives = 630/683 (92%), Gaps = 4/683 (0%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
MSG GCSIVWFRRDLRVEDNPALAAGVRAGAVI VFIWAPEEEGPYYPGRVSRWWLK SL
Sbjct: 1 MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVIPVFIWAPEEEGPYYPGRVSRWWLKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HLDSSLRSLGT L+TKRSTD VSSLLE+VK+TGAT LFFNHLYDPLSLVRDHRAKEALT
Sbjct: 61 AHLDSSLRSLGTPLITKRSTDCVSSLLEIVKSTGATLLFFNHLYDPLSLVRDHRAKEALT 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
AQGIAV SFNADLLYEPWDVNDAQG F TF+AFW++CLSMP+DP+APLLPPKRIN GD+
Sbjct: 121 AQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRINPGDV 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
SRCPSDT+ FEDESEKGSNALLARAW+PGWSNADKALT FINGPLIEYSKN RKADSATT
Sbjct: 181 SRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKADSATT 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
SFLSPHLHFGEVSVRKVFHLVRIKQV WANEGNKAG+ESVNLFLKSIGLREYSRY+SFNH
Sbjct: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYLSFNH 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
PYSHERPLLGHLKFF WVVDEGYFKAWRQGRTGYPLVDAGMRELWATGW+HDRIRVVVSS
Sbjct: 301 PYSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRIRVVVSS 360
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGT+PDGR FDRIDNPQFEGYKFD
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKFD 420
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP PIV IDAAK RL EA
Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAKARLQEA 480
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTA-RRYE 539
LSEMWQ AASRAAIENGTEEGLGD S+SAPIAFP D+QMEEIPEP RNN TTA RRYE
Sbjct: 481 LSEMWQAVAASRAAIENGTEEGLGD-SESAPIAFPQDVQMEEIPEPVRNNPTTTAVRRYE 539
Query: 540 DQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVH-N 598
DQMVPSMT+S +R+ E E SL+++NSAE SRAEVP N N NQEPRR+TLN+GV +V N
Sbjct: 540 DQMVPSMTSSFLRI-EGEPSLDIQNSAENSRAEVPTNVNANQEPRRETLNRGVTHSVRSN 598
Query: 599 NNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGTS 658
N+ QFN I AEDSTAESSST+RRERDGGVVPVWSP+TSSY+EQ V +ENGIGTS
Sbjct: 599 NHNLPQFNIMIGRNTAEDSTAESSSTTRRERDGGVVPVWSPSTSSYAEQFVSEENGIGTS 658
Query: 659 SSYLQRHPQSHQIMNCRRLSQTG 681
SSYLQRHP+SHQ+MN ++LSQTG
Sbjct: 659 SSYLQRHPRSHQLMNWKQLSQTG 681
>gi|225459298|ref|XP_002285792.1| PREDICTED: cryptochrome-1 [Vitis vinifera]
Length = 681
Score = 1199 bits (3103), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/683 (86%), Positives = 630/683 (92%), Gaps = 4/683 (0%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
MSG GCSIVWFRRDLRVEDNPALAAGVRAGAVI VFIWAPEEEGPYYPGRVSRWWLK SL
Sbjct: 1 MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVIPVFIWAPEEEGPYYPGRVSRWWLKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HLDSSLRSLGT L+TKRSTD VSSLLE+VK+TGAT LFFNHLYDPLSLVRDHRAKEALT
Sbjct: 61 AHLDSSLRSLGTPLITKRSTDCVSSLLEIVKSTGATLLFFNHLYDPLSLVRDHRAKEALT 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
AQGIAV SFNADLLYEPWDVNDAQG F TF+AFW++CLSMP+DP+APLLPPKRIN GD+
Sbjct: 121 AQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRINPGDV 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
SRCPSDT+ FEDESEKGSNALLARAW+PGWSNADKALT FINGPLIEYSKN RKADSATT
Sbjct: 181 SRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKADSATT 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
SFLSPHLHFGEVSVRKVFHLVRIKQV WANEGNKAG+ESVNLFLKSIGLREYSRY+SFNH
Sbjct: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYLSFNH 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
PYSHERPLLGHLKFF WVVDEGYFKAWRQGRTGYPLVDAGMRELWATGW+HDRIRVVVSS
Sbjct: 301 PYSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRIRVVVSS 360
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGT+PDGR FDRIDNPQFEGYKFD
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKFD 420
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP PIV IDAAK RL EA
Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAKARLQEA 480
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTA-RRYE 539
LSEMWQ AASRAAIENGTEEGLGD S+SAPIAFP D+QMEEIPEP RNN TTA RRYE
Sbjct: 481 LSEMWQAVAASRAAIENGTEEGLGD-SESAPIAFPQDVQMEEIPEPVRNNPTTTAVRRYE 539
Query: 540 DQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVH-N 598
DQMVPSMT+S +R+ E E SL+++NSAE SRAEVP N N NQEPRR+TLN+GV +V N
Sbjct: 540 DQMVPSMTSSFLRI-EGEPSLDIQNSAENSRAEVPTNVNANQEPRRETLNRGVTHSVRSN 598
Query: 599 NNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGTS 658
N+ QFN I AEDSTAESSST+RRERDGGVVPVWSP+TSSY+EQ V +ENGIGTS
Sbjct: 599 NHNLPQFNIMIGRNTAEDSTAESSSTTRRERDGGVVPVWSPSTSSYAEQFVSEENGIGTS 658
Query: 659 SSYLQRHPQSHQIMNCRRLSQTG 681
SSYLQRHP+SHQ+MN ++LSQTG
Sbjct: 659 SSYLQRHPRSHQLMNWKQLSQTG 681
>gi|161779368|gb|ABX79355.1| cryptochrome 1 [Vitis vinifera]
Length = 681
Score = 1199 bits (3102), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 593/683 (86%), Positives = 630/683 (92%), Gaps = 4/683 (0%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
MSG GCSIVWFRRDLRVEDNPALAAGVRAGAVI VFIWAPEEEGPYYPGRVSRWWLK SL
Sbjct: 1 MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVIPVFIWAPEEEGPYYPGRVSRWWLKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HLDSSLRSLGT L+TKRSTD +SSLLE+VK+TGAT LFFNHLYDPLSLVRDHRAKEALT
Sbjct: 61 AHLDSSLRSLGTPLITKRSTDCISSLLEIVKSTGATLLFFNHLYDPLSLVRDHRAKEALT 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
AQGIAV SFNADLLYEPWDVNDAQG F TF+AFW++CLSMP+DP+APLLPPKRIN GD+
Sbjct: 121 AQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRINPGDV 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
SRCPSDT+ FEDESEKGSNALLARAW+PGWSNADKALT FINGPLIEYSKN RKADSATT
Sbjct: 181 SRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKADSATT 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
SFLSPHLHFGEVSVRKVFHLVRIKQV WANEGNKAG+ESVNLFLKSIGLREYSRY+SFNH
Sbjct: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYLSFNH 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
PYSHERPLLGHLKFF WVVDEGYFKAWRQGRTGYPLVDAGMRELWATGW+HDRIRVVVSS
Sbjct: 301 PYSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRIRVVVSS 360
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGT+PDGR FDRIDNPQFEGYKFD
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKFD 420
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP PIV IDAAK RL EA
Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAKARLQEA 480
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTA-RRYE 539
LSEMWQ AASRAAIENGTEEGLGD S+SAPIAFP D+QMEEIPEP RNN TTA RRYE
Sbjct: 481 LSEMWQAVAASRAAIENGTEEGLGD-SESAPIAFPQDVQMEEIPEPVRNNPTTTAVRRYE 539
Query: 540 DQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVH-N 598
DQMVPSMT+S +R+ E E SL+++NSAE SRAEVP N N NQEPRR+TLN+GV +V N
Sbjct: 540 DQMVPSMTSSFLRI-EGEPSLDIQNSAENSRAEVPTNVNANQEPRRETLNRGVTHSVRSN 598
Query: 599 NNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGTS 658
N+ QFN I AEDSTAESSST+RRERDGGVVPVWSP+TSSY+EQ V +ENGIGTS
Sbjct: 599 NHNLPQFNIMIGRNTAEDSTAESSSTTRRERDGGVVPVWSPSTSSYAEQFVSEENGIGTS 658
Query: 659 SSYLQRHPQSHQIMNCRRLSQTG 681
SSYLQRHP+SHQ+MN ++LSQTG
Sbjct: 659 SSYLQRHPRSHQLMNWKQLSQTG 681
>gi|363807588|ref|NP_001242152.1| cryptochrome-1-like [Glycine max]
gi|261876455|dbj|BAI47553.1| cryptochrome1 [Glycine max]
gi|261876457|dbj|BAI47554.1| cryptochrome1 [Glycine max]
Length = 681
Score = 1159 bits (2999), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 577/683 (84%), Positives = 616/683 (90%), Gaps = 4/683 (0%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
MSG GCSIVWFRRDLRVEDNPALAAGVRAGAVI+VFIWAPEEEG YYPGRVSRWWLK SL
Sbjct: 1 MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVISVFIWAPEEEGQYYPGRVSRWWLKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HLDSSLR+LG+ L+TKRST+S+SSLLEVVK+TGATQLFFNHLYDPLSLVRDHRAKE LT
Sbjct: 61 AHLDSSLRNLGSPLITKRSTNSISSLLEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLT 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
AQGI VRSFN+DLLYEPWDVNDA GQPF TF+AFWE+CLSMP+DP APLLPPKRI GD+
Sbjct: 121 AQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQAPLLPPKRIIPGDV 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
RCPSDTLVFEDE EK SNALLARAWSPGWSNADKALT F+NG LIEYSKNRRKADSATT
Sbjct: 181 PRCPSDTLVFEDELEKASNALLARAWSPGWSNADKALTAFVNGALIEYSKNRRKADSATT 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
SFLSPHLHFGEVSV+KVFHLVRIKQV WANEGNKAG+ESVNLFLKSIGLREYSRY+SFNH
Sbjct: 241 SFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRYISFNH 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
PYSHERPLL HLKFF WVV+EGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS
Sbjct: 301 PYSHERPLLAHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGT+PDGR DRIDNPQFEGYK D
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRELDRIDNPQFEGYKCD 420
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP PIV IDAA+ RL EA
Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAEVRLQEA 480
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYED 540
L +MWQQEAASRAA+ENGTEEGLGDS++SAPIAFP DIQMEE PEP RNNLP RRY+D
Sbjct: 481 LIQMWQQEAASRAAMENGTEEGLGDSAESAPIAFPQDIQMEERPEPVRNNLPHGTRRYQD 540
Query: 541 QMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNN 600
QMVPS+T+S VRVEEEE+S +LRNSA +SRAEVP N Q+ R+T+NQGVL + N
Sbjct: 541 QMVPSITSSHVRVEEEETSSDLRNSAADSRAEVPINV-TTQQIARETVNQGVLLNANRNT 599
Query: 601 AFQQFNAAIVLAN-AEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGTSS 659
Q NA L N AEDSTAESSS++RRERDGGVVPVWSP S++SEQ V DENGIG S
Sbjct: 600 RVQN-NATTWLRNAAEDSTAESSSSTRRERDGGVVPVWSPPASNFSEQFVDDENGIGAGS 658
Query: 660 SYLQR-HPQSHQIMNCRRLSQTG 681
SYLQR HPQSHQ+MN RL QTG
Sbjct: 659 SYLQRQHPQSHQLMNWTRLPQTG 681
>gi|78217441|gb|ABB36796.1| cryptochrome 1 [Nicotiana sylvestris]
Length = 681
Score = 1159 bits (2997), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/683 (83%), Positives = 622/683 (91%), Gaps = 4/683 (0%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
MSG GCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEG YYPGRVSRWWLK SL
Sbjct: 1 MSGSGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGHYYPGRVSRWWLKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HLDSSL+SLGTSLVTKRSTDS+SSLLE+VK+TGATQLFFNHLYDP+SLVRDHRAKE LT
Sbjct: 61 AHLDSSLKSLGTSLVTKRSTDSISSLLEIVKSTGATQLFFNHLYDPISLVRDHRAKEVLT 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
AQGI+VRSFNADLLYEPW+VND +G+PF TF+AFWEKCLSMP+DP+APLLPPKRI GD
Sbjct: 121 AQGISVRSFNADLLYEPWEVNDEEGRPFTTFSAFWEKCLSMPYDPEAPLLPPKRIIPGDA 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
SRC SD+LVFEDESEKGSNALLARAWSPGWSNADKALTTF+NGPL+EYS+NRRKADSATT
Sbjct: 181 SRCSSDSLVFEDESEKGSNALLARAWSPGWSNADKALTTFVNGPLLEYSQNRRKADSATT 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
SFLSPHLHFGEVSVRKVFH VRIKQV WANEGNKAG+ESVNLFLKSIGLREYSRYMSFNH
Sbjct: 241 SFLSPHLHFGEVSVRKVFHFVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYMSFNH 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
PYSHERPLLGHL++F WVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS
Sbjct: 301 PYSHERPLLGHLRYFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGT+PDGR FDRIDNPQF GYK D
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFVGYKCD 420
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P+GEYVRRWLPEL+RLPTEWIHHPWNAPESVL+AAGIELGSNYP PIV ID+AK RL++A
Sbjct: 421 PHGEYVRRWLPELSRLPTEWIHHPWNAPESVLEAAGIELGSNYPLPIVEIDSAKVRLEQA 480
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLP--TTARRY 538
LS+MWQ EAASRAA+ENG EEG GDS+DS PIAFP + ME EP RNN P T RRY
Sbjct: 481 LSQMWQHEAASRAAVENGMEEGHGDSADS-PIAFPQAMHMEMDHEPVRNNNPVIVTVRRY 539
Query: 539 EDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHN 598
EDQMVPSMT+SL RV++EE+S+ +RNS ++RAEVP + NV + PRRDTL+Q V Q
Sbjct: 540 EDQMVPSMTSSLFRVDDEETSVNIRNSVVDTRAEVPNDVNVTEGPRRDTLDQAVTQPART 599
Query: 599 NNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGTS 658
N QFN + N+EDSTAESSS++ RERDGGVVPVWSP++++YS+Q VGD+NGIGTS
Sbjct: 600 NTTPPQFNFVVGRRNSEDSTAESSSST-RERDGGVVPVWSPSSTNYSDQYVGDDNGIGTS 658
Query: 659 SSYLQRHPQSHQIMNCRRLSQTG 681
SSYLQRHPQSHQ+MN +RLSQTG
Sbjct: 659 SSYLQRHPQSHQLMNWQRLSQTG 681
>gi|359807220|ref|NP_001240855.1| cryptochrome-1-like [Glycine max]
gi|261876451|dbj|BAI47551.1| cryptochrome1 [Glycine max]
gi|261876453|dbj|BAI47552.1| cryptochrome1 [Glycine max]
Length = 681
Score = 1155 bits (2988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/682 (83%), Positives = 612/682 (89%), Gaps = 2/682 (0%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
MSG GCSIVWFRRDLRVEDNPALAAGVRAGAV+ VFIWAPEEEG YYPGRVSRWWLK SL
Sbjct: 1 MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVCVFIWAPEEEGQYYPGRVSRWWLKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HLDS LR+LG+ L+TKRST+S+SSLLEVVK+TGATQLFFNHLYDPLSLVRDH+AKE LT
Sbjct: 61 AHLDSYLRNLGSPLITKRSTNSISSLLEVVKSTGATQLFFNHLYDPLSLVRDHKAKEVLT 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
AQGI VRSFN+DLLYEPWDVNDA GQPF TF+AFWE+CLSMP+DP APLLPPKRI GD+
Sbjct: 121 AQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQAPLLPPKRIIPGDV 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
SRCPSDTLVFEDESEK SNALLARAWSPGWSNADKAL F+NG LIEYSKNRRKADSATT
Sbjct: 181 SRCPSDTLVFEDESEKASNALLARAWSPGWSNADKALAAFVNGALIEYSKNRRKADSATT 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
SFLSPHLHFGEVSV+KVFHLVRIKQV WANEGNKAG+ESVNLFLKSIGLREYSRY+SFNH
Sbjct: 241 SFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRYISFNH 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
PYSHERPLLGHLKFF WVV+EGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS
Sbjct: 301 PYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGT+PDGR FDRIDNPQF GYK D
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFVGYKCD 420
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP PIV IDAA+ RL EA
Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAEVRLQEA 480
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYED 540
L +MW+QEAASRAA+ENGTEEGLGDSS+SAPIAFP DIQMEE PEP RNN P RRY+D
Sbjct: 481 LIQMWRQEAASRAAMENGTEEGLGDSSESAPIAFPQDIQMEERPEPVRNNPPHGTRRYQD 540
Query: 541 QMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNN 600
QMVPS+T+S VRVEEEE+S +LRNSA +SRAEVP N Q R+T+NQGVL + N
Sbjct: 541 QMVPSITSSHVRVEEEETSSDLRNSAADSRAEVPINVTTQQNA-RETVNQGVLLNTNRNT 599
Query: 601 AFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGTSSS 660
Q + AEDSTAESSS++RRERDGGVVPVWSP S++SEQ V DENGIGT SS
Sbjct: 600 RVQNNPTTWLRNAAEDSTAESSSSTRRERDGGVVPVWSPPASNFSEQFVDDENGIGTGSS 659
Query: 661 YLQR-HPQSHQIMNCRRLSQTG 681
YLQR HPQSHQ+MN RL QTG
Sbjct: 660 YLQRQHPQSHQLMNWTRLPQTG 681
>gi|350539503|ref|NP_001234667.1| cryptochrome 1 [Solanum lycopersicum]
gi|5524201|gb|AAD44161.1|AF130423_1 cryptochrome 1 [Solanum lycopersicum]
gi|8101442|gb|AAF72555.1|AF130424_1 cryptochrome 1 [Solanum lycopersicum]
Length = 679
Score = 1150 bits (2975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/682 (83%), Positives = 621/682 (91%), Gaps = 4/682 (0%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
MSG GCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFI+APEEEG YYPGRVSRWWLK SL
Sbjct: 1 MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIYAPEEEGHYYPGRVSRWWLKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HLDSSL+SLGTSL+TKRSTDS+SSLLEVVK+TGATQLFFNHLYDP+SLVRDHR KE LT
Sbjct: 61 AHLDSSLKSLGTSLITKRSTDSISSLLEVVKSTGATQLFFNHLYDPISLVRDHRTKEILT 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
AQGI+VRSFNADLLYEPW+VND +G+PF TF+AFWEKCLSMP+DP+APLLPPKRI SGD
Sbjct: 121 AQGISVRSFNADLLYEPWEVNDDEGRPFTTFSAFWEKCLSMPYDPEAPLLPPKRIISGDA 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
SRCPSD LVFEDESEKGSNALLARAWSPGWSNADKALTTF+NGPL+EYS+NRRKADSATT
Sbjct: 181 SRCPSDNLVFEDESEKGSNALLARAWSPGWSNADKALTTFVNGPLLEYSQNRRKADSATT 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
SFLSPHLHFGEVSVRKVFH VRIKQV WANEGNKAG+ESVNLFLKSIGLREYSRYMSFNH
Sbjct: 241 SFLSPHLHFGEVSVRKVFHFVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYMSFNH 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
PYSHERPLLGHL++F WVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS
Sbjct: 301 PYSHERPLLGHLRYFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGT+PDGR DRIDNPQF GYK D
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRELDRIDNPQFVGYKCD 420
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P+GEYVRRWLPELARLPTEWIHHPWNAPESVL+AAGIELGSNYP PIV ID+AK RL++A
Sbjct: 421 PHGEYVRRWLPELARLPTEWIHHPWNAPESVLEAAGIELGSNYPLPIVEIDSAKVRLEQA 480
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNN-LPTTARRYE 539
LS+MWQ +AA+RAAIENG EEG GDS+DS PIAFP + ME EP RNN + T RRYE
Sbjct: 481 LSQMWQNDAAARAAIENGMEEGHGDSADS-PIAFPQAMHMEMDHEPVRNNPVIVTVRRYE 539
Query: 540 DQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNN 599
DQMVPSMT+SL R E+EE+S+++RNS ESRAEVP + NV + RRDT +Q V+QT
Sbjct: 540 DQMVPSMTSSLFRAEDEENSVDIRNSVVESRAEVPTDINVAEVHRRDTRDQAVMQTA-RT 598
Query: 600 NAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGTSS 659
NA FN A+ N+EDSTAESSS++ RERDGGVVP WSP++S+YS+Q VGD+NGIGTSS
Sbjct: 599 NATPHFNFAVGRRNSEDSTAESSSST-RERDGGVVPTWSPSSSNYSDQYVGDDNGIGTSS 657
Query: 660 SYLQRHPQSHQIMNCRRLSQTG 681
SYLQRHPQSHQ+MN +RLSQTG
Sbjct: 658 SYLQRHPQSHQLMNWQRLSQTG 679
>gi|351722683|ref|NP_001235205.1| cryptochrome 1 [Glycine max]
gi|89199716|gb|ABD63261.1| cryptochrome 1 [Glycine max]
gi|261876445|dbj|BAI47548.1| cryptochrome1 [Glycine max]
Length = 681
Score = 1147 bits (2968), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/683 (83%), Positives = 617/683 (90%), Gaps = 4/683 (0%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
MSG G SIVWFRRDLR+EDNPAL AGVRAGAV+AVF+WAPEEEG YYPGRVSRWWLK+SL
Sbjct: 1 MSGGGGSIVWFRRDLRIEDNPALTAGVRAGAVVAVFVWAPEEEGQYYPGRVSRWWLKNSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HL SSLR+LGT L+TKRSTD++SSLLEVVK+TGATQLFFNHLYDPLSLVRDHRAKE LT
Sbjct: 61 AHLHSSLRNLGTPLITKRSTDTLSSLLEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLT 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
AQGI VRSFNADLLYEPW+VNDA G+PF TFAAFWE+CLSMP+DP++PLLPPKRI GD
Sbjct: 121 AQGITVRSFNADLLYEPWEVNDAHGRPFTTFAAFWERCLSMPYDPESPLLPPKRIIPGDA 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
SRCPSDTL+FEDE EK SNALLARAWSPGWSNA+KALTTFINGPLIEYSKNRRKADSATT
Sbjct: 181 SRCPSDTLLFEDELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATT 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSPHLHFGE+SV+KVFHLVRIKQV WANEGNKAG+ESVNLFLKSIGLREYSRY+SFNH
Sbjct: 241 SLLSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNH 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
PYSHERPLLGHLKFF WVV+EGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS
Sbjct: 301 PYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++PDGR DRIDNPQFEGYKFD
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRIDNPQFEGYKFD 420
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP PIV IDAAK RL EA
Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKTRLLEA 480
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYED 540
LSEMWQQEAASRAA+ENGTEEGLGDSS+S P AFP D+QMEE EP RNN ARRY+D
Sbjct: 481 LSEMWQQEAASRAAMENGTEEGLGDSSESVPAAFPQDMQMEETHEPVRNNPLPVARRYQD 540
Query: 541 QMVPSMTTSLVRVEEEESSLELRNSAEE-SRAEVPRNANVNQEPRRDTLNQGVLQTVHNN 599
QMVPS+T+SL+RVEEEE+S +LR+SAEE SRAEVP AN Q TLN+ +LQT N
Sbjct: 541 QMVPSITSSLLRVEEEETSSDLRHSAEESSRAEVPVTANAQQNVGV-TLNERMLQTT-NR 598
Query: 600 NAFQQFNAAIVLAN-AEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGTS 658
NA Q+N + L N AEDS ESSS +RRERDGGVVPVWSP SSYSEQ VG+ENGI S
Sbjct: 599 NAQTQYNTTMELRNVAEDSAVESSSGTRRERDGGVVPVWSPPASSYSEQFVGEENGITNS 658
Query: 659 SSYLQRHPQSHQIMNCRRLSQTG 681
SS+LQRHPQSHQ++N R+L QTG
Sbjct: 659 SSFLQRHPQSHQMLNWRQLPQTG 681
>gi|359806517|ref|NP_001241002.1| cryptochrome-1-like [Glycine max]
gi|261876447|dbj|BAI47549.1| cryptochrome1 [Glycine max]
gi|261876449|dbj|BAI47550.1| cryptochrome1 [Glycine max]
Length = 682
Score = 1144 bits (2959), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/684 (83%), Positives = 616/684 (90%), Gaps = 5/684 (0%)
Query: 1 MSGRGCS-IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHS 59
MSG GCS IVWFRRDLR+EDNPAL AGVRAGAV+AVFIWAPEEEG YYPGRVSRWWLK+S
Sbjct: 1 MSGGGCSSIVWFRRDLRIEDNPALTAGVRAGAVVAVFIWAPEEEGQYYPGRVSRWWLKNS 60
Query: 60 LSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
L+HLDSSLR+LGT L+TKRSTD++SSL EVVK+TGATQLFFNHLYDPLSLVRDHRAKE L
Sbjct: 61 LAHLDSSLRNLGTPLITKRSTDTLSSLFEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVL 120
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGD 179
TAQGI VRSFNADLLYEPWDVNDA G+PF TFAAFWE+CLSMP+DP++PLLPPKRI GD
Sbjct: 121 TAQGITVRSFNADLLYEPWDVNDAHGRPFTTFAAFWERCLSMPYDPESPLLPPKRIIPGD 180
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
SRCPSDTL+FEDE EK SNALLARAWSPGWSNA+KALTTFINGPLIEYSKNRRKADSAT
Sbjct: 181 ASRCPSDTLLFEDELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSAT 240
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSPHLHFGE+SV+KVFHLVRIKQV WANEGNKAG+ESVNLFLKSIGLREYSRY+SFN
Sbjct: 241 TSLLSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFN 300
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
HPYSHERPLLGHLKFF WVV+EGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS
Sbjct: 301 HPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 360
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++PDGR DRIDNPQFEGYKF
Sbjct: 361 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRIDNPQFEGYKF 420
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DPNGEYVRRWLPEL+RLPTEWIHHPWNAPESVLQAAGIELGSNYP PIV IDAAK RL E
Sbjct: 421 DPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKNRLLE 480
Query: 480 ALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYE 539
ALS+MWQQEAASRAA+ENGTEEGLGDSS+S P AFP D +MEE EP RNN ARRY+
Sbjct: 481 ALSKMWQQEAASRAAMENGTEEGLGDSSESVPAAFPQDTRMEETHEPVRNNPLPIARRYQ 540
Query: 540 DQMVPSMTTSLVRVEEEESSLELRNSAEE-SRAEVPRNANVNQEPRRDTLNQGVLQTVHN 598
DQMVPS+T+SL+RVEEEE+S +LRNSAEE SRAEVP AN Q LN+ +LQT N
Sbjct: 541 DQMVPSITSSLLRVEEEETSSDLRNSAEESSRAEVPVTANAQQNAGV-ALNERMLQTT-N 598
Query: 599 NNAFQQFNAAIVLAN-AEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGT 657
N Q+N + L N A+DS ESSS +RRERDGG+VPVWSP SSYSEQ VGDENGI +
Sbjct: 599 RNTQTQYNTTMDLRNVADDSAVESSSGTRRERDGGLVPVWSPPASSYSEQFVGDENGITS 658
Query: 658 SSSYLQRHPQSHQIMNCRRLSQTG 681
SSSYLQRHPQSHQ++N ++L QTG
Sbjct: 659 SSSYLQRHPQSHQMLNWKQLPQTG 682
>gi|357489649|ref|XP_003615112.1| Cryptochrome [Medicago truncatula]
gi|357489651|ref|XP_003615113.1| Cryptochrome [Medicago truncatula]
gi|124361190|gb|ABN09162.1| Deoxyribodipyrimidine photolyase, class 1 [Medicago truncatula]
gi|355516447|gb|AES98070.1| Cryptochrome [Medicago truncatula]
gi|355516448|gb|AES98071.1| Cryptochrome [Medicago truncatula]
Length = 679
Score = 1137 bits (2941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 568/683 (83%), Positives = 608/683 (89%), Gaps = 10/683 (1%)
Query: 2 SGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLS 61
SG GCSIVWFRRDLRVEDNPALAAGVRAGAV+ VFIWAPEEEG YYPGRVSRWWLK+SL+
Sbjct: 4 SGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVGVFIWAPEEEGQYYPGRVSRWWLKNSLA 63
Query: 62 HLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTA 121
HLDSSLR+LGT LVTKRSTDSVSSLLEVVK+TGATQ+FFNHLYDPLSLVRDHRAKE LTA
Sbjct: 64 HLDSSLRNLGTPLVTKRSTDSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAKEILTA 123
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMS 181
QGI VRSFN+DLLYEPWDVND GQPF TF +FWE+CLSMP+DP APLLPPKRI GD+S
Sbjct: 124 QGITVRSFNSDLLYEPWDVNDENGQPFTTFDSFWERCLSMPYDPQAPLLPPKRIIPGDVS 183
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
+CPSDTLVFED+ EK SNALLARAWSPGWSNA+KALTTFINGPLIEYSKNRRKADSATTS
Sbjct: 184 KCPSDTLVFEDDLEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTS 243
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
FLSPHLHFGEVSV+KVFHLVRIKQV WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHP
Sbjct: 244 FLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP 303
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
YSHERPLLGHLKFF WVV+EGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF
Sbjct: 304 YSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 363
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGT+PDGR FDRIDNPQFEGYK DP
Sbjct: 364 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCDP 423
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP PIV IDAA RL+EAL
Sbjct: 424 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAATVRLEEAL 483
Query: 482 SEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQ 541
+MWQ EAASRAA ENGTEEGLGDS++S PIAFP DIQMEE EP RNN P RRY+DQ
Sbjct: 484 IQMWQLEAASRAAAENGTEEGLGDSAESTPIAFPQDIQMEERHEPIRNNAPHGTRRYQDQ 543
Query: 542 MVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNNA 601
MVPSMT+S VRVEEEE+S +RNSA +SRAEVP NAN R+ +NQG LQ N N
Sbjct: 544 MVPSMTSSRVRVEEEETS-SVRNSAGDSRAEVPTNANA-----REAMNQGALQN-GNRNT 596
Query: 602 FQQFNAAIVL---ANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGTS 658
Q+ N AEDSTAESSS++RRERDGGVVP WSP S++S+Q V DENGIG +
Sbjct: 597 RQRHNPTTTFWLRNAAEDSTAESSSSTRRERDGGVVPEWSPQASNFSDQYVDDENGIGAT 656
Query: 659 SSYLQRHPQSHQIMNCRRLSQTG 681
S YLQRHPQSHQ+M+ RL QTG
Sbjct: 657 SPYLQRHPQSHQLMSWTRLPQTG 679
>gi|339777721|gb|AEK05698.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777727|gb|AEK05701.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777729|gb|AEK05702.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777731|gb|AEK05703.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777733|gb|AEK05704.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777735|gb|AEK05705.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777737|gb|AEK05706.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777739|gb|AEK05707.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777745|gb|AEK05710.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777747|gb|AEK05711.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777749|gb|AEK05712.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777751|gb|AEK05713.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777753|gb|AEK05714.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777755|gb|AEK05715.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777759|gb|AEK05717.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777761|gb|AEK05718.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777763|gb|AEK05719.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777765|gb|AEK05720.1| cryptochrome 1 protein 2 [Populus balsamifera]
Length = 633
Score = 1137 bits (2941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/633 (87%), Positives = 590/633 (93%)
Query: 29 AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLE 88
AGAV+AVF+WAPEEEG YYPGRVSRWWLK SL+HLDSSLRSLGTSLVTKRSTDSVS+LLE
Sbjct: 1 AGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSLAHLDSSLRSLGTSLVTKRSTDSVSTLLE 60
Query: 89 VVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPF 148
V+K+TGATQLFFNHLYDPLSLVRDHRAKE LTAQGIAVRSFNADLLYEPWDVNDAQG+PF
Sbjct: 61 VIKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQGIAVRSFNADLLYEPWDVNDAQGRPF 120
Query: 149 ATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSP 208
TFA FW++CLSMPFDP+APLLPPKRI SGD SRCPS+ LVFEDE EKGSNALLARAWSP
Sbjct: 121 TTFATFWDRCLSMPFDPEAPLLPPKRIISGDASRCPSEMLVFEDELEKGSNALLARAWSP 180
Query: 209 GWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSW 268
GWSNAD+ALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQV W
Sbjct: 181 GWSNADRALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLW 240
Query: 269 ANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWR 328
ANEGNKAG+ESVNLFLKSIGLREYSRY+SFNHPYSHERPLLGHLKFF WVVD GYFKAWR
Sbjct: 241 ANEGNKAGEESVNLFLKSIGLREYSRYLSFNHPYSHERPLLGHLKFFPWVVDGGYFKAWR 300
Query: 329 QGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLES 388
QGRTGYPLVDAGMRELWATGWLHDRIRVVV+SFFVKVLQLPWRWGMKYFWDTLLDADLES
Sbjct: 301 QGRTGYPLVDAGMRELWATGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLES 360
Query: 389 DALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAP 448
DALGWQYI+GT+PDGR FDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAP
Sbjct: 361 DALGWQYITGTLPDGREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAP 420
Query: 449 ESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSD 508
ESVLQAAGIELGSNYP PIV IDAAK RL+EALSEMWQQEAASRAAIENGTEEGLGDSS+
Sbjct: 421 ESVLQAAGIELGSNYPLPIVGIDAAKVRLEEALSEMWQQEAASRAAIENGTEEGLGDSSE 480
Query: 509 SAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSLELRNSAEE 568
SAPIAFP DI MEE EP RNN P T RRYEDQMVPSMT+S +R+E+EE+S ++RNS +
Sbjct: 481 SAPIAFPQDINMEENHEPVRNNPPATNRRYEDQMVPSMTSSFLRIEDEETSSDVRNSTGD 540
Query: 569 SRAEVPRNANVNQEPRRDTLNQGVLQTVHNNNAFQQFNAAIVLANAEDSTAESSSTSRRE 628
RAEVPR+ NVNQ+PRRDTLNQG +Q+VHN+N+ FN LAN EDSTAESSS+SRRE
Sbjct: 541 GRAEVPRDVNVNQQPRRDTLNQGFVQSVHNDNSLPPFNVVRGLANVEDSTAESSSSSRRE 600
Query: 629 RDGGVVPVWSPATSSYSEQLVGDENGIGTSSSY 661
RDGG+VPVWSP SSYSEQ VGDENGIG +SSY
Sbjct: 601 RDGGIVPVWSPPASSYSEQFVGDENGIGATSSY 633
>gi|339777723|gb|AEK05699.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777725|gb|AEK05700.1| cryptochrome 1 protein 2 [Populus balsamifera]
gi|339777757|gb|AEK05716.1| cryptochrome 1 protein 2 [Populus balsamifera]
Length = 633
Score = 1136 bits (2939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/633 (87%), Positives = 590/633 (93%)
Query: 29 AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLE 88
AGAV+AVF+WAPEEEG YYPGRVSRWWLK SL+HLDSSLRSLGTSLVTKRSTDSVS+LLE
Sbjct: 1 AGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSLAHLDSSLRSLGTSLVTKRSTDSVSTLLE 60
Query: 89 VVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPF 148
V+K+TGATQLFFNHLYDPLSLVRDHRAKE LTAQGIAVRSFNADLLYEPWDVNDAQG+PF
Sbjct: 61 VIKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQGIAVRSFNADLLYEPWDVNDAQGRPF 120
Query: 149 ATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSP 208
TFA FW++CLSMPFDP+APLLPPKRI SGD SRCPS+ LVFEDE EKGSNALLARAWSP
Sbjct: 121 TTFATFWDRCLSMPFDPEAPLLPPKRIISGDASRCPSEMLVFEDELEKGSNALLARAWSP 180
Query: 209 GWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSW 268
GWSNAD+ALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQV W
Sbjct: 181 GWSNADRALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLW 240
Query: 269 ANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWR 328
ANEGNKAG+ESVNLFLKSIGLREYSRY+SFNHPYSHERPLLGHLKFF WVVD GYFKAWR
Sbjct: 241 ANEGNKAGEESVNLFLKSIGLREYSRYLSFNHPYSHERPLLGHLKFFPWVVDGGYFKAWR 300
Query: 329 QGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLES 388
QGRTGYPLVDAGMRELWATGWLHDRIRVVV+SFFVKVLQLPWRWGMKYFWDTLLDADLES
Sbjct: 301 QGRTGYPLVDAGMRELWATGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLES 360
Query: 389 DALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAP 448
DALGWQYI+GT+PDGR FDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAP
Sbjct: 361 DALGWQYITGTLPDGREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAP 420
Query: 449 ESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSD 508
ESVLQAAGIELGSNYP PIV IDAAK RL+EALSEMWQQEAASRAAIENGTEEGLGDSS+
Sbjct: 421 ESVLQAAGIELGSNYPLPIVGIDAAKVRLEEALSEMWQQEAASRAAIENGTEEGLGDSSE 480
Query: 509 SAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSLELRNSAEE 568
SAPIAFP DI MEE EP RNN P T RRYEDQMVPSMT+S +R+E+EE+S ++RNS +
Sbjct: 481 SAPIAFPQDINMEENHEPVRNNPPATNRRYEDQMVPSMTSSFLRIEDEETSSDVRNSTGD 540
Query: 569 SRAEVPRNANVNQEPRRDTLNQGVLQTVHNNNAFQQFNAAIVLANAEDSTAESSSTSRRE 628
RAEVPR+ NVNQ+PRRDTLNQG +Q+VHN+N+ FN LAN EDSTAESSS+SRRE
Sbjct: 541 GRAEVPRDVNVNQQPRRDTLNQGFVQSVHNDNSXPPFNVVRGLANVEDSTAESSSSSRRE 600
Query: 629 RDGGVVPVWSPATSSYSEQLVGDENGIGTSSSY 661
RDGG+VPVWSP SSYSEQ VGDENGIG +SSY
Sbjct: 601 RDGGIVPVWSPPASSYSEQFVGDENGIGATSSY 633
>gi|339777741|gb|AEK05708.1| cryptochrome 1 protein 2 [Populus balsamifera]
Length = 633
Score = 1135 bits (2937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/633 (87%), Positives = 589/633 (93%)
Query: 29 AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLE 88
AGAV+AVF+WAPEEEG YYPGRVSRWWLK SL+HLDSSLRSLGTSLVTKRSTDSVS+LLE
Sbjct: 1 AGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSLAHLDSSLRSLGTSLVTKRSTDSVSTLLE 60
Query: 89 VVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPF 148
V+K+TGATQLFFNHLYDPLSLVRDHRAKE LTAQGIAVRSFNADLLYEPWDVNDAQG+PF
Sbjct: 61 VIKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQGIAVRSFNADLLYEPWDVNDAQGRPF 120
Query: 149 ATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSP 208
TFA FW++CL MPFDP+APLLPPKRI SGD SRCPS+ LVFEDE EKGSNALLARAWSP
Sbjct: 121 TTFATFWDRCLXMPFDPEAPLLPPKRIISGDASRCPSEMLVFEDELEKGSNALLARAWSP 180
Query: 209 GWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSW 268
GWSNAD+ALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQV W
Sbjct: 181 GWSNADRALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLW 240
Query: 269 ANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWR 328
ANEGNKAG+ESVNLFLKSIGLREYSRY+SFNHPYSHERPLLGHLKFF WVVD GYFKAWR
Sbjct: 241 ANEGNKAGEESVNLFLKSIGLREYSRYLSFNHPYSHERPLLGHLKFFPWVVDGGYFKAWR 300
Query: 329 QGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLES 388
QGRTGYPLVDAGMRELWATGWLHDRIRVVV+SFFVKVLQLPWRWGMKYFWDTLLDADLES
Sbjct: 301 QGRTGYPLVDAGMRELWATGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLES 360
Query: 389 DALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAP 448
DALGWQYI+GT+PDGR FDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAP
Sbjct: 361 DALGWQYITGTLPDGREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAP 420
Query: 449 ESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSD 508
ESVLQAAGIELGSNYP PIV IDAAK RL+EALSEMWQQEAASRAAIENGTEEGLGDSS+
Sbjct: 421 ESVLQAAGIELGSNYPLPIVGIDAAKVRLEEALSEMWQQEAASRAAIENGTEEGLGDSSE 480
Query: 509 SAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSLELRNSAEE 568
SAPIAFP DI MEE EP RNN P T RRYEDQMVPSMT+S +R+E+EE+S ++RNS +
Sbjct: 481 SAPIAFPQDINMEENHEPVRNNPPATNRRYEDQMVPSMTSSFLRIEDEETSSDVRNSTGD 540
Query: 569 SRAEVPRNANVNQEPRRDTLNQGVLQTVHNNNAFQQFNAAIVLANAEDSTAESSSTSRRE 628
RAEVPR+ NVNQ+PRRDTLNQG +Q+VHN+N+ FN LAN EDSTAESSS+SRRE
Sbjct: 541 GRAEVPRDVNVNQQPRRDTLNQGFVQSVHNDNSLPPFNVVRGLANVEDSTAESSSSSRRE 600
Query: 629 RDGGVVPVWSPATSSYSEQLVGDENGIGTSSSY 661
RDGG+VPVWSP SSYSEQ VGDENGIG +SSY
Sbjct: 601 RDGGIVPVWSPPASSYSEQFVGDENGIGATSSY 633
>gi|255545724|ref|XP_002513922.1| DNA photolyase, putative [Ricinus communis]
gi|223547008|gb|EEF48505.1| DNA photolyase, putative [Ricinus communis]
Length = 660
Score = 1135 bits (2936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/681 (83%), Positives = 604/681 (88%), Gaps = 21/681 (3%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
MSG GCSIVWFRRDLRVEDNPALAAGVRAGAV+AVF+WAPEEEG YYPGRVSRWWLK SL
Sbjct: 1 MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HLDSSLRSLGT LV+KRSTDSVSSLLEVVK+TGATQLFFNHLYDP+SLVRDHRAKE LT
Sbjct: 61 AHLDSSLRSLGTVLVSKRSTDSVSSLLEVVKSTGATQLFFNHLYDPISLVRDHRAKEVLT 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
AQGIAVRS P CLSMP+DP+APLLPPKRI SGD+
Sbjct: 121 AQGIAVRSLTRICYMNPG-----------------XXCLSMPYDPEAPLLPPKRIISGDI 163
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
SRCPSDTL+FEDESEKGSNALLARAWSPGWSNA+KALTTFINGPLIEYSKNRRKADSATT
Sbjct: 164 SRCPSDTLIFEDESEKGSNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATT 223
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
SFLSPHLHFGEVSVRKV HLVRIKQV WANEGNKAG+ESVNLFLKSIGLREYSRY+SFNH
Sbjct: 224 SFLSPHLHFGEVSVRKVLHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYLSFNH 283
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
PYSHERPLLGHLKFF W+V+EGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS
Sbjct: 284 PYSHERPLLGHLKFFPWIVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 343
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGT+PDGR FDRIDNPQFEGYKFD
Sbjct: 344 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKFD 403
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P+GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP PIV IDAAK RL EA
Sbjct: 404 PHGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLQEA 463
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYED 540
LSEMWQ EAASRAAIENGTEEGLGDSS+SAPIAFP DIQMEE EP RNN P RRYED
Sbjct: 464 LSEMWQHEAASRAAIENGTEEGLGDSSESAPIAFPQDIQMEENLEPIRNNPPIPIRRYED 523
Query: 541 QMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNN 600
QMVPSMT+SL+RVEEEE+S +LRN+AE+SRAEVPR+ NVNQE RR N GV Q +NN
Sbjct: 524 QMVPSMTSSLLRVEEEETSSDLRNAAEDSRAEVPRDVNVNQEQRR---NLGVAQAFRSNN 580
Query: 601 AFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGTSSS 660
N L N EDSTAESSS++RRERDGG+VPVWSP ++SYSEQ GDENGIGTSSS
Sbjct: 581 -LPNVNILRGLPNTEDSTAESSSSTRRERDGGIVPVWSPPSTSYSEQFAGDENGIGTSSS 639
Query: 661 YLQRHPQSHQIMNCRRLSQTG 681
YLQRHPQSHQI+N RRLSQTG
Sbjct: 640 YLQRHPQSHQIINWRRLSQTG 660
>gi|339777743|gb|AEK05709.1| cryptochrome 1 protein 2 [Populus balsamifera]
Length = 633
Score = 1135 bits (2936), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 553/633 (87%), Positives = 589/633 (93%)
Query: 29 AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLE 88
AGAV+AVF+WAPEEEG YYPGRVSRWWLK SL+HLDSSLRSLGTSLVTKRSTDSVS+LLE
Sbjct: 1 AGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSLAHLDSSLRSLGTSLVTKRSTDSVSTLLE 60
Query: 89 VVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPF 148
V+K+TGATQLFFNHLYDPLSLVRDHRAKE LTAQGIAVRSFNADLLYEPWDVNDAQG+PF
Sbjct: 61 VIKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQGIAVRSFNADLLYEPWDVNDAQGRPF 120
Query: 149 ATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSP 208
TFA FW++CLSMPFDP+APLLPPKRI SGD SRCPS+ LVFEDE EKGSNALLARAWSP
Sbjct: 121 TTFATFWDRCLSMPFDPEAPLLPPKRIISGDASRCPSEMLVFEDELEKGSNALLARAWSP 180
Query: 209 GWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSW 268
GWSNAD+ALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQV W
Sbjct: 181 GWSNADRALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLW 240
Query: 269 ANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWR 328
ANEGNKAG+ESVNLFLKSIGLREYSRY+SFNHPYSHERPLLGHLKFF WVVD GYFKAWR
Sbjct: 241 ANEGNKAGEESVNLFLKSIGLREYSRYLSFNHPYSHERPLLGHLKFFPWVVDGGYFKAWR 300
Query: 329 QGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLES 388
QGRTGYPLVDAGMRELWATGWLHDRIRVVV+SFFVKVLQLPWRWGMKYFWDTLLDADLES
Sbjct: 301 QGRTGYPLVDAGMRELWATGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLES 360
Query: 389 DALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAP 448
DALGWQYI+GT+PDGR FDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAP
Sbjct: 361 DALGWQYITGTLPDGREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAP 420
Query: 449 ESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSD 508
ESVLQAAGIELGSNYP PIV IDAAK RL+EALSEMWQQEAASRAAIENGTEEGLGDSS+
Sbjct: 421 ESVLQAAGIELGSNYPLPIVGIDAAKVRLEEALSEMWQQEAASRAAIENGTEEGLGDSSE 480
Query: 509 SAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSLELRNSAEE 568
SAPIAFP DI MEE EP RNN P T RRYEDQMVPSMT+S +R+E+EE+S ++RNS +
Sbjct: 481 SAPIAFPQDINMEENHEPVRNNPPATNRRYEDQMVPSMTSSFLRIEDEETSSDVRNSTGD 540
Query: 569 SRAEVPRNANVNQEPRRDTLNQGVLQTVHNNNAFQQFNAAIVLANAEDSTAESSSTSRRE 628
RAEVPR+ N NQ+PRRDTLNQG +Q+VHN+N+ FN LAN EDSTAESSS+SRRE
Sbjct: 541 GRAEVPRDVNXNQQPRRDTLNQGFVQSVHNDNSLPPFNVVRGLANVEDSTAESSSSSRRE 600
Query: 629 RDGGVVPVWSPATSSYSEQLVGDENGIGTSSSY 661
RDGG+VPVWSP SSYSEQ VGDENGIG +SSY
Sbjct: 601 RDGGIVPVWSPPASSYSEQFVGDENGIGATSSY 633
>gi|339777705|gb|AEK05690.1| cryptochrome 1 protein 1 [Populus balsamifera]
Length = 639
Score = 1132 bits (2929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/640 (85%), Positives = 582/640 (90%), Gaps = 1/640 (0%)
Query: 21 PALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRST 80
PALAAGVRAGAV+AVF+WAPEEEG YYPGRVSRWWLK SL+HLDSSLRSLGTSLVTKRST
Sbjct: 1 PALAAGVRAGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSLAHLDSSLRSLGTSLVTKRST 60
Query: 81 DSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDV 140
DSVSSLLEVVK+TGATQL FNHLYDPLSLVRDHRAKE RSFNADLLYEPWDV
Sbjct: 61 DSVSSLLEVVKSTGATQLLFNHLYDPLSLVRDHRAKEXXXXXXXXXRSFNADLLYEPWDV 120
Query: 141 NDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNA 200
NDAQG+PF TF FWE+CLSMPFDP+APLLPPKRI SGD+SRCPS TLVFEDESEKGSNA
Sbjct: 121 NDAQGRPFTTFDTFWERCLSMPFDPEAPLLPPKRIISGDVSRCPSVTLVFEDESEKGSNA 180
Query: 201 LLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHL 260
LLARAWSPGWSNAD+ALTTFINGPLIEYS NRRKADSATTSFLSPHLHFGEVSVRKVFHL
Sbjct: 181 LLARAWSPGWSNADRALTTFINGPLIEYSMNRRKADSATTSFLSPHLHFGEVSVRKVFHL 240
Query: 261 VRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVD 320
VRIKQV WANEGN+AG+ESVNLF+KSIGLREYSRY+SFNHP +HERPLLGHLKFF WVVD
Sbjct: 241 VRIKQVLWANEGNRAGEESVNLFIKSIGLREYSRYLSFNHPCTHERPLLGHLKFFPWVVD 300
Query: 321 EGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDT 380
EGYFKAWRQGRTGYPLVDAGMRELWA GWLHDRIRVVV+SFFVKVLQLPWRWGMKYFWDT
Sbjct: 301 EGYFKAWRQGRTGYPLVDAGMRELWAAGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDT 360
Query: 381 LLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEW 440
LLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEW
Sbjct: 361 LLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEW 420
Query: 441 IHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTE 500
IHHPWNAPESVLQAAGIELGSNYP PIV IDAAK RL+EALSEMWQQEAASRAAIENGTE
Sbjct: 421 IHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLEEALSEMWQQEAASRAAIENGTE 480
Query: 501 EGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSL 560
EGLGDSS+SAP AFP DI MEE EP RNN P T RRYEDQMVPSMT+S +R+E+EE+S
Sbjct: 481 EGLGDSSESAPFAFPEDIHMEENHEPVRNNPPATNRRYEDQMVPSMTSSFLRIEDEETS- 539
Query: 561 ELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNNAFQQFNAAIVLANAEDSTAE 620
++RNS + RAEVPR+ NVNQEPRRD LNQG +QTV NN A FN + L N EDSTAE
Sbjct: 540 DVRNSTGDGRAEVPRDVNVNQEPRRDALNQGFVQTVRNNTALSPFNISRGLTNVEDSTAE 599
Query: 621 SSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGTSSS 660
SSS+ RRERDGG+VPVWSP TSSYSEQ VGD+NGIG +SS
Sbjct: 600 SSSSGRRERDGGIVPVWSPPTSSYSEQFVGDDNGIGATSS 639
>gi|259019315|gb|ACV89993.1| CRY1 [Fragaria vesca]
Length = 673
Score = 1132 bits (2929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/679 (83%), Positives = 600/679 (88%), Gaps = 9/679 (1%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
G GCS+VWFRRDLRVEDNPAL AGVRAG V+A+FIWAPEEEGPYYPGRVSRWWLKHSL+H
Sbjct: 4 GSGCSVVWFRRDLRVEDNPALLAGVRAGGVVALFIWAPEEEGPYYPGRVSRWWLKHSLAH 63
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
LDSSLRSLGT L+TK+STDSVSSLLEV ATGATQLFFNHLYDP+SLVRDHRAKE L+A
Sbjct: 64 LDSSLRSLGTPLITKKSTDSVSSLLEVCLATGATQLFFNHLYDPISLVRDHRAKEVLSAN 123
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
GI VRSFNADLLYEPWDVND G+PF TF AFWE+CLSMPFDP+APLLPPKRI SGD SR
Sbjct: 124 GITVRSFNADLLYEPWDVNDVHGRPFTTFDAFWERCLSMPFDPEAPLLPPKRIISGDASR 183
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
CP DTLVFEDESEKGSNALLARAWSPGWS+ADKA+TTFINGPLIEYS NRRKADS TTS
Sbjct: 184 CPPDTLVFEDESEKGSNALLARAWSPGWSSADKAVTTFINGPLIEYSTNRRKADSNTTSL 243
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHLHFGEVSVRKVFHL+RIKQ+ WANEGNKAG+ESVNLFLKSIGLREYSRY+SFNHPY
Sbjct: 244 LSPHLHFGEVSVRKVFHLIRIKQLLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPY 303
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
SHERPLLGHLKFF WV+++ YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF
Sbjct: 304 SHERPLLGHLKFFPWVINQNYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 363
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR FDRIDNPQFEGYK DP+
Sbjct: 364 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGREFDRIDNPQFEGYKCDPH 423
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
GEYVRRWLPEL+RLPT+WIHHPWNAPESVLQAAGIELGSNYP PIV I+AAK RL EAL+
Sbjct: 424 GEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGIEAAKSRLQEALT 483
Query: 483 EMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQM 542
EMWQ E RAA ENGTEEGLG+SS+S IAFP DIQME+ E RNN P RRYEDQM
Sbjct: 484 EMWQHE---RAAAENGTEEGLGESSESTSIAFPEDIQMEDSHEQVRNNPPPPTRRYEDQM 540
Query: 543 VPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNNAF 602
VPS+TTSLVRVEEEESSL+L SRAEVP N +QEP RDT+NQ Q HNN
Sbjct: 541 VPSITTSLVRVEEEESSLDL-----PSRAEVPTNVTGDQEPMRDTMNQEGFQPNHNNTPP 595
Query: 603 QQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGTSSSYL 662
Q + EDSTAESSS++RRERDGGVVPVWSP+ SSYSEQ V DENGI T SSYL
Sbjct: 596 QPNTTLTLQYVVEDSTAESSSSTRRERDGGVVPVWSPSNSSYSEQFVSDENGIAT-SSYL 654
Query: 663 QRHPQSHQIMNCRRLSQTG 681
QRHPQSHQIMN RRLSQTG
Sbjct: 655 QRHPQSHQIMNWRRLSQTG 673
>gi|401782498|dbj|BAM36552.1| cryptochrome1 [Fragaria x ananassa]
Length = 673
Score = 1130 bits (2924), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 563/679 (82%), Positives = 600/679 (88%), Gaps = 9/679 (1%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
G GCS+VWFRRDLRVEDNPAL AGVRAG V+A+FIWAPEEEGP+YPGRVSRWWLKHSL+H
Sbjct: 4 GSGCSVVWFRRDLRVEDNPALLAGVRAGGVVALFIWAPEEEGPFYPGRVSRWWLKHSLAH 63
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
LDSSLRSLGT L+TK+STDSVSSLLEV ATGATQLFFNHLYDP+SLVRDHRAKE L+A
Sbjct: 64 LDSSLRSLGTPLITKKSTDSVSSLLEVCLATGATQLFFNHLYDPISLVRDHRAKEVLSAN 123
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
GI VRSFNADLLYEPWDVND G+PF TF AFWE+CLSMPFDP+APLLPPKRI SGD SR
Sbjct: 124 GITVRSFNADLLYEPWDVNDVHGRPFTTFDAFWERCLSMPFDPEAPLLPPKRIISGDASR 183
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
CP DTLVFEDESEKGSNALLARAWSPGWS+ADKA+TTFINGPLIEYS NRRKADS TTS
Sbjct: 184 CPPDTLVFEDESEKGSNALLARAWSPGWSSADKAVTTFINGPLIEYSTNRRKADSNTTSL 243
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHLHFGEVSVRKVFHL+RIKQ+ WANEGNKAG+ESVNLFLKSIGLREYSRY+SFNHPY
Sbjct: 244 LSPHLHFGEVSVRKVFHLIRIKQLLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPY 303
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
SHERPLLGHLKFF WV+++ YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF
Sbjct: 304 SHERPLLGHLKFFPWVINQNYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 363
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR FDRIDNPQFEGYK DP+
Sbjct: 364 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGREFDRIDNPQFEGYKCDPH 423
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
GEYVRRWLPEL+RLPT+WIHHPWNAPESVLQAAGIELGSNYP PIV I+AAK RL EAL+
Sbjct: 424 GEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGIEAAKSRLQEALT 483
Query: 483 EMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQM 542
EMWQ E RAA ENGTEEGLG+SS+S IAFP DIQME+ E RNN P RRYEDQM
Sbjct: 484 EMWQHE---RAAAENGTEEGLGESSESTSIAFPEDIQMEDSHEQVRNNPPPPTRRYEDQM 540
Query: 543 VPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNNAF 602
VPS+TTSLVRVEEEESSL+L SRAEVP N +QEP RDT+NQ Q HNN
Sbjct: 541 VPSITTSLVRVEEEESSLDL-----PSRAEVPTNVTGDQEPMRDTMNQEGFQPNHNNTPP 595
Query: 603 QQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGTSSSYL 662
Q + EDSTAESSS++RRERDGGVVPVWSP+ SSYSEQ V DENGI T SSYL
Sbjct: 596 QPNTTLTLQYVVEDSTAESSSSTRRERDGGVVPVWSPSNSSYSEQFVSDENGIAT-SSYL 654
Query: 663 QRHPQSHQIMNCRRLSQTG 681
QRHPQSHQIMN RRLSQTG
Sbjct: 655 QRHPQSHQIMNWRRLSQTG 673
>gi|37725007|gb|AAO23970.1| cryptochrome 1 [Pisum sativum]
gi|45935254|gb|AAS79662.1| cryptochrome 1 apoprotein [Pisum sativum]
gi|45935256|gb|AAS79663.1| cryptochrome 1 apoprotein [Pisum sativum]
Length = 682
Score = 1127 bits (2914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/684 (82%), Positives = 608/684 (88%), Gaps = 5/684 (0%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
MS GCSIVWFRRDLRVEDNPALAAGVRAGAV+ VFIWAPEEEG YYPGRVSRWWLK+SL
Sbjct: 1 MSSGGCSIVWFRRDLRVEDNPALAAGVRAGAVVGVFIWAPEEEGQYYPGRVSRWWLKNSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
S LDSSLR+LGT LVTKRSTDS+SSLLEVVK+TGATQ+FFNHLYDPLSLVRDHRAKE LT
Sbjct: 61 SQLDSSLRNLGTPLVTKRSTDSISSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAKEILT 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
AQGI VRS+N+DLLYEPWDVND GQPF TF +FWE+CLSMP+DP APLLPPKRI GD+
Sbjct: 121 AQGITVRSYNSDLLYEPWDVNDEHGQPFTTFDSFWERCLSMPYDPQAPLLPPKRIIPGDV 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
SRCPSDTLVFEDE EK SNALLARAWSPGWSNA+KALTTFINGPLIEYS NRRKADSATT
Sbjct: 181 SRCPSDTLVFEDELEKSSNALLARAWSPGWSNANKALTTFINGPLIEYSVNRRKADSATT 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
SFLSPHLHFGEVSV+KVFHLVRIKQV WANEGNKAG+ESVNLFLKSIGLREYSRY+SFNH
Sbjct: 241 SFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRYISFNH 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
PYSHERPLLGHLKFF WVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS
Sbjct: 301 PYSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGT+PDGR FDRIDNPQFEGYK D
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCD 420
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP PIV IDAA RL+EA
Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAATVRLEEA 480
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYED 540
L +MWQ EAASR A ENGTEEGLGDS++SAPIAFP DIQMEE EP RNN P RRY+D
Sbjct: 481 LIQMWQLEAASRTAAENGTEEGLGDSTESAPIAFPQDIQMEERHEPVRNNPPHGTRRYQD 540
Query: 541 QMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNN 600
QMVPSMT S VRVE+EE+S +RNSA +SRAEVP NAN Q R+ ++QG+LQ V+ N
Sbjct: 541 QMVPSMTYSRVRVEDEETS-SVRNSAGDSRAEVPTNANTQQN-GREPMDQGMLQNVNRNT 598
Query: 601 AFQQFNAAIVL---ANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGT 657
++ N AEDSTAESSS++RRERDGGVVP WSP S++S+Q V DENGIG
Sbjct: 599 RQRRNNTTTTFWLRNAAEDSTAESSSSTRRERDGGVVPEWSPQASNFSDQFVDDENGIGA 658
Query: 658 SSSYLQRHPQSHQIMNCRRLSQTG 681
+S YLQRHPQ+HQ+M+ RL QTG
Sbjct: 659 TSPYLQRHPQTHQMMSWTRLPQTG 682
>gi|45935258|gb|AAS79664.1| mutant cryptochrome 1-1 protein [Pisum sativum]
Length = 682
Score = 1124 bits (2907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/684 (82%), Positives = 607/684 (88%), Gaps = 5/684 (0%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
MS GCSIVWFRRDLRVEDNPALAAGVRAGAV+ VFIWAPEEEG YYPGRVSRWWLK+SL
Sbjct: 1 MSSGGCSIVWFRRDLRVEDNPALAAGVRAGAVVGVFIWAPEEEGQYYPGRVSRWWLKNSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
S LDSSLR+LGT LVTKRSTDS+SSLLEVVK+TGATQ+FFNHLYDPLSLVRDHRAKE LT
Sbjct: 61 SQLDSSLRNLGTPLVTKRSTDSISSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAKEILT 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
AQGI VRS+N+DLLYEPWDVND GQPF TF +FWE+CLSMP+DP APLLPPKRI GD+
Sbjct: 121 AQGITVRSYNSDLLYEPWDVNDEHGQPFTTFDSFWERCLSMPYDPQAPLLPPKRIIPGDV 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
SRCPSDTLVFEDE EK SNALLARAWSPGWSNA+KALTTFINGPLIEYS NRRKADSATT
Sbjct: 181 SRCPSDTLVFEDELEKSSNALLARAWSPGWSNANKALTTFINGPLIEYSVNRRKADSATT 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
SFLSPHLHF EVSV+KVFHLVRIKQV WANEGNKAG+ESVNLFLKSIGLREYSRY+SFNH
Sbjct: 241 SFLSPHLHFEEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRYISFNH 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
PYSHERPLLGHLKFF WVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS
Sbjct: 301 PYSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGT+PDGR FDRIDNPQFEGYK D
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCD 420
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP PIV IDAA RL+EA
Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAATVRLEEA 480
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYED 540
L +MWQ EAASR A ENGTEEGLGDS++SAPIAFP DIQMEE EP RNN P RRY+D
Sbjct: 481 LIQMWQLEAASRTAAENGTEEGLGDSTESAPIAFPQDIQMEERHEPVRNNPPHGTRRYQD 540
Query: 541 QMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNN 600
QMVPSMT S VRVE+EE+S +RNSA +SRAEVP NAN Q R+ ++QG+LQ V+ N
Sbjct: 541 QMVPSMTYSRVRVEDEETS-SVRNSAGDSRAEVPTNANTQQN-GREPMDQGMLQNVNRNT 598
Query: 601 AFQQFNAAIVL---ANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGT 657
++ N AEDSTAESSS++RRERDGGVVP WSP S++S+Q V DENGIG
Sbjct: 599 RQRRNNTTTTFWLRNAAEDSTAESSSSTRRERDGGVVPEWSPQASNFSDQFVDDENGIGA 658
Query: 658 SSSYLQRHPQSHQIMNCRRLSQTG 681
+S YLQRHPQ+HQ+M+ RL QTG
Sbjct: 659 TSPYLQRHPQTHQMMSWTRLPQTG 682
>gi|255964973|gb|ACU44659.1| cryptochrome 1 [Medicago sativa]
Length = 676
Score = 1122 bits (2903), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 562/679 (82%), Positives = 602/679 (88%), Gaps = 10/679 (1%)
Query: 2 SGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLS 61
SG GCSIVWFRRDLRVEDNPALAAGVRAGAV+ VFIWAPEEEG YYPGRVSRWWLK+SL+
Sbjct: 4 SGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVGVFIWAPEEEGQYYPGRVSRWWLKNSLA 63
Query: 62 HLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTA 121
HLDSSLR+LGT LVTKRSTDSVSSLLEVVK+TGATQ+FFNHLYDPLSLVRDHRAKE LTA
Sbjct: 64 HLDSSLRNLGTPLVTKRSTDSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAKEILTA 123
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMS 181
QGI VRSFN+DLLYEPWDVND GQPF TF +FWE+CLSMP+DP AP LPPKRI GD+S
Sbjct: 124 QGITVRSFNSDLLYEPWDVNDENGQPFTTFDSFWERCLSMPYDPQAPPLPPKRIIPGDVS 183
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
+CPSDTLVFED+ EK SNALLARAWSPGWSNA+KALTTFINGPLIEYSKNRRKADSATTS
Sbjct: 184 KCPSDTLVFEDDLEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTS 243
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
FLSPHLHFGEVSV+KV HLVRIKQV WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHP
Sbjct: 244 FLSPHLHFGEVSVKKVLHLVRIKQVFWANEGNEAGEESVNLFLKSIGLREYSRYISFNHP 303
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
YSHERP LGHLKFF WVV+EGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF
Sbjct: 304 YSHERPPLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 363
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGT+PDGR FDRIDNPQFEGYK DP
Sbjct: 364 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCDP 423
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP PIV IDAA RL+EAL
Sbjct: 424 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAATVRLEEAL 483
Query: 482 SEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQ 541
+MWQ EAASRAA ENGTEEGLGDS++S PIAFP DIQMEE EP RNN P RRY+DQ
Sbjct: 484 IQMWQLEAASRAAAENGTEEGLGDSAESTPIAFPQDIQMEERHEPIRNNAPHGTRRYQDQ 543
Query: 542 MVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNNA 601
MVPSMT+S VRVEEEE+S +RNSA +SRAEVP NAN R+ +NQG LQ N N
Sbjct: 544 MVPSMTSSRVRVEEEETS-SVRNSAGDSRAEVPTNANA-----REAVNQGALQN-GNRNT 596
Query: 602 FQQFNAAIVL---ANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGTS 658
Q+ N AEDSTAESSS++RRERDGGVVP WSP S++S+Q V DENGIG +
Sbjct: 597 RQRHNPTTTFWLRNAAEDSTAESSSSTRRERDGGVVPEWSPQASNFSDQYVDDENGIGAT 656
Query: 659 SSYLQRHPQSHQIMNCRRL 677
S YLQRHPQSHQ+M+ RL
Sbjct: 657 SPYLQRHPQSHQLMSWTRL 675
>gi|339777709|gb|AEK05692.1| cryptochrome 1 protein 1 [Populus balsamifera]
gi|339777717|gb|AEK05696.1| cryptochrome 1 protein 1 [Populus balsamifera]
gi|339777719|gb|AEK05697.1| cryptochrome 1 protein 1 [Populus balsamifera]
Length = 639
Score = 1115 bits (2884), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/640 (85%), Positives = 583/640 (91%), Gaps = 1/640 (0%)
Query: 21 PALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRST 80
PALAAGVRAGAV+AVF+WAPEEEG YYPGRVSRWWLK SL+HLDSSLRSLGTSLVTKRST
Sbjct: 1 PALAAGVRAGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSLAHLDSSLRSLGTSLVTKRST 60
Query: 81 DSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDV 140
DSVSSLLEVVK+TGATQL FNHLYDPLSLVRDHRAKE RSFNADLLYEPWDV
Sbjct: 61 DSVSSLLEVVKSTGATQLLFNHLYDPLSLVRDHRAKEXXXXXXXXXRSFNADLLYEPWDV 120
Query: 141 NDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNA 200
NDAQG+PF TF FWE+CLSMPFDP+APLLPPKRI SGD+SRCPS TLVFEDESEKGSNA
Sbjct: 121 NDAQGRPFTTFDTFWERCLSMPFDPEAPLLPPKRIISGDVSRCPSVTLVFEDESEKGSNA 180
Query: 201 LLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHL 260
LLARAWSPGWSNAD+ALTTFINGPLIEYS NRRKADSATTSFLSPHLHFGEVSVRKVFHL
Sbjct: 181 LLARAWSPGWSNADRALTTFINGPLIEYSMNRRKADSATTSFLSPHLHFGEVSVRKVFHL 240
Query: 261 VRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVD 320
VRIKQV WANEGN+AG+ESVNLF+KSIGLREYSRY+SFNHP +HERPLLGHLKFF WVVD
Sbjct: 241 VRIKQVLWANEGNRAGEESVNLFIKSIGLREYSRYLSFNHPCTHERPLLGHLKFFPWVVD 300
Query: 321 EGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDT 380
EGYFKAWRQGRTGYPLVDAGMRELWA GWLHDRIRVVV+SFFVKVLQLPWRWGMKYFWDT
Sbjct: 301 EGYFKAWRQGRTGYPLVDAGMRELWAAGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDT 360
Query: 381 LLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEW 440
LLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEW
Sbjct: 361 LLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEW 420
Query: 441 IHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTE 500
IHHPWNAPESVLQAAGIELGSNYP PIV IDAAK RL+EALSEMWQQEAASRAAIENGTE
Sbjct: 421 IHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLEEALSEMWQQEAASRAAIENGTE 480
Query: 501 EGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSL 560
EGLGDSS+SAP AFP DI MEE EP RNN P T RRYEDQMVPSMT+S +R+E+EE+S
Sbjct: 481 EGLGDSSESAPFAFPEDIHMEENHEPVRNNPPATNRRYEDQMVPSMTSSFLRIEDEETS- 539
Query: 561 ELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNNAFQQFNAAIVLANAEDSTAE 620
++RNS + RAEVPR+ NVNQEPRRD LNQG +QTV NN A FN + L N EDSTAE
Sbjct: 540 DVRNSTGDGRAEVPRDVNVNQEPRRDALNQGFVQTVRNNTALSPFNISRGLTNVEDSTAE 599
Query: 621 SSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGTSSS 660
SSS+SRRERDGG+VPVWSP TSSYSEQ VGD+NGIG +SS
Sbjct: 600 SSSSSRRERDGGIVPVWSPPTSSYSEQFVGDDNGIGATSS 639
>gi|339777715|gb|AEK05695.1| cryptochrome 1 protein 1 [Populus balsamifera]
Length = 639
Score = 1115 bits (2883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/640 (85%), Positives = 583/640 (91%), Gaps = 1/640 (0%)
Query: 21 PALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRST 80
PALAAGVRAGAV+AVF+WAPEEEG YYPGRVSRWWLK SL+HLDSSLRSLGTSLVTKRST
Sbjct: 1 PALAAGVRAGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSLAHLDSSLRSLGTSLVTKRST 60
Query: 81 DSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDV 140
DSVSSLLEVVK+TG+TQL FNHLYDPLSLVRDHRAKE RSFNADLLYEPWDV
Sbjct: 61 DSVSSLLEVVKSTGSTQLLFNHLYDPLSLVRDHRAKEXXXXXXXXXRSFNADLLYEPWDV 120
Query: 141 NDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNA 200
NDAQG+PF TF FWE+CLSMPFDP+APLLPPKRI SGD+SRCPS TLVFEDESEKGSNA
Sbjct: 121 NDAQGRPFTTFDTFWERCLSMPFDPEAPLLPPKRIISGDVSRCPSVTLVFEDESEKGSNA 180
Query: 201 LLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHL 260
LLARAWSPGWSNAD+ALTTFINGPLIEYS NRRKADSATTSFLSPHLHFGEVSVRKVFHL
Sbjct: 181 LLARAWSPGWSNADRALTTFINGPLIEYSMNRRKADSATTSFLSPHLHFGEVSVRKVFHL 240
Query: 261 VRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVD 320
VRIKQV WANEGN+AG+ESVNLF+KSIGLREYSRY+SFNHP +HERPLLGHLKFF WVVD
Sbjct: 241 VRIKQVLWANEGNRAGEESVNLFIKSIGLREYSRYLSFNHPCTHERPLLGHLKFFPWVVD 300
Query: 321 EGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDT 380
EGYFKAWRQGRTGYPLVDAGMRELWA GWLHDRIRVVV+SFFVKVLQLPWRWGMKYFWDT
Sbjct: 301 EGYFKAWRQGRTGYPLVDAGMRELWAAGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDT 360
Query: 381 LLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEW 440
LLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEW
Sbjct: 361 LLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEW 420
Query: 441 IHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTE 500
IHHPWNAPESVLQAAGIELGSNYP PIV IDAAK RL+EALSEMWQQEAASRAAIENGTE
Sbjct: 421 IHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLEEALSEMWQQEAASRAAIENGTE 480
Query: 501 EGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSL 560
EGLGDSS+SAP AFP DI MEE EP RNN P T RRYEDQMVPSMT+S +R+E+EE+S
Sbjct: 481 EGLGDSSESAPFAFPEDIHMEENHEPVRNNPPATNRRYEDQMVPSMTSSFLRIEDEETS- 539
Query: 561 ELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNNAFQQFNAAIVLANAEDSTAE 620
++RNS + RAEVPR+ NVNQEPRRD LNQG +QTV NN A FN + L N EDSTAE
Sbjct: 540 DVRNSTGDGRAEVPRDVNVNQEPRRDALNQGFVQTVRNNTALSPFNISRGLTNVEDSTAE 599
Query: 621 SSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGTSSS 660
SSS+SRRERDGG+VPVWSP TSSYSEQ VGD+NGIG +SS
Sbjct: 600 SSSSSRRERDGGIVPVWSPPTSSYSEQFVGDDNGIGATSS 639
>gi|339777711|gb|AEK05693.1| cryptochrome 1 protein 1 [Populus balsamifera]
gi|339777713|gb|AEK05694.1| cryptochrome 1 protein 1 [Populus balsamifera]
Length = 639
Score = 1114 bits (2881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/640 (85%), Positives = 582/640 (90%), Gaps = 1/640 (0%)
Query: 21 PALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRST 80
PALAAGVRAGAV+AVF+WAPEEEG YYPGRVSRWWLK SL+HLDSSLRSLGTSLVTKRST
Sbjct: 1 PALAAGVRAGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSLAHLDSSLRSLGTSLVTKRST 60
Query: 81 DSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDV 140
DSVSSLLEVVK+TG TQL FNHLYDPLSLVRDHRAKE RSFNADLLYEPWDV
Sbjct: 61 DSVSSLLEVVKSTGXTQLLFNHLYDPLSLVRDHRAKEXXXXXXXXXRSFNADLLYEPWDV 120
Query: 141 NDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNA 200
NDAQG+PF TF FWE+CLSMPFDP+APLLPPKRI SGD+SRCPS TLVFEDESEKGSNA
Sbjct: 121 NDAQGRPFTTFDTFWERCLSMPFDPEAPLLPPKRIISGDVSRCPSVTLVFEDESEKGSNA 180
Query: 201 LLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHL 260
LLARAWSPGWSNAD+ALTTFINGPLIEYS NRRKADSATTSFLSPHLHFGEVSVRKVFHL
Sbjct: 181 LLARAWSPGWSNADRALTTFINGPLIEYSMNRRKADSATTSFLSPHLHFGEVSVRKVFHL 240
Query: 261 VRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVD 320
VRIKQV WANEGN+AG+ESVNLF+KSIGLREYSRY+SFNHP +HERPLLGHLKFF WVVD
Sbjct: 241 VRIKQVLWANEGNRAGEESVNLFIKSIGLREYSRYLSFNHPCTHERPLLGHLKFFPWVVD 300
Query: 321 EGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDT 380
EGYFKAWRQGRTGYPLVDAGMRELWA GWLHDRIRVVV+SFFVKVLQLPWRWGMKYFWDT
Sbjct: 301 EGYFKAWRQGRTGYPLVDAGMRELWAAGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDT 360
Query: 381 LLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEW 440
LLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEW
Sbjct: 361 LLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEW 420
Query: 441 IHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTE 500
IHHPWNAPESVLQAAGIELGSNYP PIV IDAAK RL+EALSEMWQQEAASRAAIENGTE
Sbjct: 421 IHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLEEALSEMWQQEAASRAAIENGTE 480
Query: 501 EGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSL 560
EGLGDSS+SAP AFP DI MEE EP RNN P T RRYEDQMVPSMT+S +R+E+EE+S
Sbjct: 481 EGLGDSSESAPFAFPEDIHMEENHEPVRNNPPATNRRYEDQMVPSMTSSFLRIEDEETS- 539
Query: 561 ELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNNAFQQFNAAIVLANAEDSTAE 620
++RNS + RAEVPR+ NVNQEPRRD LNQG +QTV NN A FN + L N EDSTAE
Sbjct: 540 DVRNSTGDGRAEVPRDVNVNQEPRRDALNQGFVQTVRNNTALSPFNISRGLTNVEDSTAE 599
Query: 621 SSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGTSSS 660
SSS+SRRERDGG+VPVWSP TSSYSEQ VGD+NGIG +SS
Sbjct: 600 SSSSSRRERDGGIVPVWSPPTSSYSEQFVGDDNGIGATSS 639
>gi|339777707|gb|AEK05691.1| cryptochrome 1 protein 1 [Populus balsamifera]
Length = 639
Score = 1112 bits (2875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/640 (85%), Positives = 582/640 (90%), Gaps = 1/640 (0%)
Query: 21 PALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRST 80
PALAAGVRAGAV+AVF+WAPEEEG YYPGRVSRWWLK SL+HLDSSLRSLGTSLVTKRST
Sbjct: 1 PALAAGVRAGAVVAVFVWAPEEEGHYYPGRVSRWWLKQSLAHLDSSLRSLGTSLVTKRST 60
Query: 81 DSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDV 140
DSVSSLLEVVK+TGATQL FNHLYDPLSLVRDHRAKE RSFNADLLYEPWDV
Sbjct: 61 DSVSSLLEVVKSTGATQLLFNHLYDPLSLVRDHRAKEXXXXXXXXXRSFNADLLYEPWDV 120
Query: 141 NDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNA 200
NDAQG+PF TF FWE+CLSMPFDP+APLLPPKRI SGD+SRCPS TLVFEDESEKGSNA
Sbjct: 121 NDAQGRPFTTFDTFWERCLSMPFDPEAPLLPPKRIISGDVSRCPSVTLVFEDESEKGSNA 180
Query: 201 LLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHL 260
LLARAWSPGWSNAD+ALTTFINGPLIEYS NRRKADSATTSFLSPHLHFGEVSVRKVFHL
Sbjct: 181 LLARAWSPGWSNADRALTTFINGPLIEYSMNRRKADSATTSFLSPHLHFGEVSVRKVFHL 240
Query: 261 VRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVD 320
VRIKQV WANEGN+AG+ESVNLF+KSIGLREYSRY+SFNHP +HERPLLGHLKFF WVVD
Sbjct: 241 VRIKQVLWANEGNRAGEESVNLFIKSIGLREYSRYLSFNHPCTHERPLLGHLKFFPWVVD 300
Query: 321 EGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDT 380
EGYFKAWRQGRTGYPLVDAGMRELWA GWLHDRIRVVV+SFFVKVLQLPWRWGMKYFWDT
Sbjct: 301 EGYFKAWRQGRTGYPLVDAGMRELWAAGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDT 360
Query: 381 LLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEW 440
LLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEW
Sbjct: 361 LLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEW 420
Query: 441 IHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTE 500
IHHPWNAPESVLQAAGIELGSNYP PIV IDAAK RL+EALSEMWQQEAASRAAIE GTE
Sbjct: 421 IHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLEEALSEMWQQEAASRAAIEIGTE 480
Query: 501 EGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSL 560
EGLGDSS+SAP AFP DI MEE EP RNN P T RRYEDQMVPSMT+S +R+E+EE+S
Sbjct: 481 EGLGDSSESAPFAFPEDIHMEENHEPVRNNPPATNRRYEDQMVPSMTSSFLRIEDEETS- 539
Query: 561 ELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNNAFQQFNAAIVLANAEDSTAE 620
++RNS + RAEVPR+ NVNQEPRRD LNQG +QTV NN A FN + L N EDSTAE
Sbjct: 540 DVRNSTGDGRAEVPRDVNVNQEPRRDALNQGFVQTVRNNTALSPFNISRGLTNVEDSTAE 599
Query: 621 SSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGTSSS 660
SSS+SRRERDGG+VPVWSP TSSYSEQ VGD+NGIG +SS
Sbjct: 600 SSSSSRRERDGGIVPVWSPPTSSYSEQFVGDDNGIGATSS 639
>gi|449437020|ref|XP_004136290.1| PREDICTED: cryptochrome-1-like [Cucumis sativus]
gi|449496973|ref|XP_004160278.1| PREDICTED: cryptochrome-1-like [Cucumis sativus]
Length = 681
Score = 1097 bits (2838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/685 (82%), Positives = 610/685 (89%), Gaps = 8/685 (1%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
MSG GCSIVWFRRDLR+EDNPAL A VRAGAV+ VFIWAPEEEG YYPGRVSRWWLK SL
Sbjct: 1 MSGGGCSIVWFRRDLRIEDNPALTAAVRAGAVVVVFIWAPEEEGHYYPGRVSRWWLKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HLDSSLRSLGT L+TKRST+++S+LL+V KATGA+ LFFNHLYDPLSL+RDHR KE L+
Sbjct: 61 AHLDSSLRSLGTYLLTKRSTNTISALLDVFKATGASHLFFNHLYDPLSLIRDHRVKEVLS 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
AQGI VRS+NADLLYEPWDV DA G PF TFA FWE+CLSMP DP+APLLPPKRI SGD
Sbjct: 121 AQGIRVRSYNADLLYEPWDVKDANGNPFTTFAGFWERCLSMPCDPEAPLLPPKRIISGDA 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
SRCP DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPL+EYSKNRRKADSATT
Sbjct: 181 SRCPCDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLLEYSKNRRKADSATT 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
SFLSPHLHFGEVSVRKVFHLVR+KQV WANEGNKAG+ESVNLFLKSIGLREYSRYMSFNH
Sbjct: 241 SFLSPHLHFGEVSVRKVFHLVRMKQVLWANEGNKAGEESVNLFLKSIGLREYSRYMSFNH 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
PYSHERPLLGHLKFF WVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS
Sbjct: 301 PYSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGT+PD R FDRIDNPQ EGYKFD
Sbjct: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDSREFDRIDNPQLEGYKFD 420
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
PNGEYVRRWLPEL+RLPTEWIHHPWNAPESVLQAAG+ELGSNYP PIV +DAAK RL+EA
Sbjct: 421 PNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGVELGSNYPLPIVGLDAAKARLEEA 480
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQM-EEIPEPARNNLPTTARRYE 539
LSEMWQQEAASRAAIENGTEEGLGDSS+S PIAFP DI M EE EPAR N T R YE
Sbjct: 481 LSEMWQQEAASRAAIENGTEEGLGDSSESIPIAFPQDIAMDEEDIEPARMNA-HTVRCYE 539
Query: 540 DQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNN 599
DQMVPSMT+S VR+ E+ESSL ++++AE+ RAEVP NAN+ QEP RD +N + T
Sbjct: 540 DQMVPSMTSS-VRL-EDESSLNIQSTAEDGRAEVPTNANLPQEPARDAVNPRAMPTAPTQ 597
Query: 600 NAFQQFNAAIVL-ANAEDSTAESSSTS--RRERDGGVVPVWSPATSSYSEQLVGDENGIG 656
+ + A I L + EDSTAESSS+S RRERDGGVVPVWSP +SSY+EQ V DENGIG
Sbjct: 598 TR-RPYTAGIALRTSVEDSTAESSSSSDVRRERDGGVVPVWSPPSSSYTEQFVVDENGIG 656
Query: 657 TSSSYLQRHPQSHQIMNCRRLSQTG 681
TSSS+LQ H Q+HQI+N RRLSQTG
Sbjct: 657 TSSSFLQGHQQTHQIINWRRLSQTG 681
>gi|38037416|gb|AAR08429.1| cryptochrome 1 [Orobanche minor]
Length = 679
Score = 1086 bits (2809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/673 (79%), Positives = 591/673 (87%), Gaps = 3/673 (0%)
Query: 2 SGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLS 61
SG GCSIVWFRRDLRVEDNPALAAGVRAGAV+ +FIWAPEEEG YYPGRVSRWWLK SLS
Sbjct: 4 SGGGCSIVWFRRDLRVEDNPALAAGVRAGAVLPLFIWAPEEEGHYYPGRVSRWWLKQSLS 63
Query: 62 HLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTA 121
HLD SLRSLGTSLVT+RSTDSVSSLLEV+K TGA Q+FFNHLYDP+SLVRDHRAKE LTA
Sbjct: 64 HLDISLRSLGTSLVTRRSTDSVSSLLEVIKLTGAKQIFFNHLYDPISLVRDHRAKEVLTA 123
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMS 181
+G+AVRSFNADLLYEPW+V+D +GQPF TFA FWE+CLSMP+DP+APLLPPKRI SGD+S
Sbjct: 124 EGVAVRSFNADLLYEPWEVHDQEGQPFTTFAGFWERCLSMPYDPEAPLLPPKRIISGDLS 183
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
RC SDTLVFEDESEKGSNALLARAWSPGWSNADKALT F NGPL+EYSKNRRKADSATTS
Sbjct: 184 RCTSDTLVFEDESEKGSNALLARAWSPGWSNADKALTVFTNGPLLEYSKNRRKADSATTS 243
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
FLSPHLHFGEVSVRK+FHL RIKQV WANEGNKAG+ES+NLFLKSIGLREYSRYMSFNHP
Sbjct: 244 FLSPHLHFGEVSVRKIFHLARIKQVLWANEGNKAGEESINLFLKSIGLREYSRYMSFNHP 303
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
YSHERPLLGHLK+F WV+DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF
Sbjct: 304 YSHERPLLGHLKYFPWVIDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 363
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++PDG DRIDNPQF+GYK DP
Sbjct: 364 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGCELDRIDNPQFDGYKCDP 423
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
NGEYVRRWLPELARLPTEWIHHPWN PESVLQAAGIELGSNYP PIV ID AK RL EAL
Sbjct: 424 NGEYVRRWLPELARLPTEWIHHPWNTPESVLQAAGIELGSNYPLPIVGIDTAKARLQEAL 483
Query: 482 SEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNN-LPTTARRYED 540
S+MWQ E ASRAAIENG EEGLG+SS+ PIAFPP+ Q++ EP RNN + RRYED
Sbjct: 484 SQMWQHETASRAAIENGVEEGLGESSEFTPIAFPPNTQIDMDNEPVRNNPINAITRRYED 543
Query: 541 QMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRN-ANVNQEPRRDTL-NQGVLQTVHN 598
QMVP+MT+SL+RV +EE+S+ L S + RAEVP N N +EPR + GV+ ++
Sbjct: 544 QMVPTMTSSLIRVVDEETSIGLDISDNDGRAEVPSNIVNFMEEPRGGPHDDNGVIVDGND 603
Query: 599 NNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIGTS 658
NN F Q+ ++EDSTAESSS+ RRERDGGVVPVWSP+ S+Y Q G+++GIGTS
Sbjct: 604 NNGFLQYEFLRGRRHSEDSTAESSSSGRRERDGGVVPVWSPSNSTYPNQFPGEDSGIGTS 663
Query: 659 SSYLQRHPQSHQI 671
SS+L RHPQS +
Sbjct: 664 SSFLPRHPQSASL 676
>gi|304571314|dbj|BAJ15775.1| cryptochrome1, partial [Cardamine nipponica]
Length = 693
Score = 1075 bits (2781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/686 (79%), Positives = 598/686 (87%), Gaps = 26/686 (3%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
CSIVWFRRDLRVEDNPALAA VRAG VIA+F+WAPEEEG Y+PGRVSRWWLK+SL+ LDS
Sbjct: 1 CSIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 60
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SLRSLGT L+TKRSTDSV+SLL+VVK+TGA+Q+FFNHLYDPLSLVRDHRAK+ LTAQGIA
Sbjct: 61 SLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIA 120
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
VRSFNADLLYEPW+V D G+PF+ FAAFWE+CLSMP+DP++PLLPPK+I SGD+S+C S
Sbjct: 121 VRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSKCVS 180
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
D LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP
Sbjct: 181 DPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 240
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
H HFGEVSVRKVFHLVRIKQV+WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHE
Sbjct: 241 HFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNHPYSHE 300
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
RPLLGHLKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV
Sbjct: 301 RPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 360
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
LQLPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEY
Sbjct: 361 LQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 420
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMW 485
VRRWLPEL+RLPTEWIHHPWNAPESVLQAAGIELGSNYP P++ +D AK RL EALS+MW
Sbjct: 421 VRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHEALSQMW 480
Query: 486 QQEAASRAAIENGTEEGLGDSS--DSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMV 543
Q EAASRAAIENG+EEGLGDS+ + API FP DI MEEI EP R N RRYEDQMV
Sbjct: 481 QLEAASRAAIENGSEEGLGDSTEVEEAPIEFPRDITMEEI-EPTRLN---PIRRYEDQMV 536
Query: 544 PSMTTSLVRVEE-EESSLELRNSAEESRAEVPRN----ANVNQEPRRDTLNQGVLQTVHN 598
PS+T+SL+R EE EESSL LRNS ESRAEVPRN N Q+PR + + V +
Sbjct: 537 PSITSSLIRPEEDEESSLNLRNSVGESRAEVPRNMVNTTNQVQQPRAEPASNQVAAMI-- 594
Query: 599 NNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIG-- 656
+FN IV + EDSTAESSS+ RRERDGG+VP WSP YSEQ +ENGIG
Sbjct: 595 ----PEFNIRIVAESTEDSTAESSSSGRRERDGGIVPEWSPG---YSEQFPSEENGIGGG 647
Query: 657 -TSSSYLQRHPQSHQIMNCRRLSQTG 681
T+SSYLQ H H+I+N RRLSQTG
Sbjct: 648 STTSSYLQNH---HEILNWRRLSQTG 670
>gi|304571302|dbj|BAJ15769.1| cryptochrome1, partial [Cardamine nipponica]
gi|304571304|dbj|BAJ15770.1| cryptochrome1, partial [Cardamine nipponica]
gi|304571308|dbj|BAJ15772.1| cryptochrome1, partial [Cardamine nipponica]
gi|304571310|dbj|BAJ15773.1| cryptochrome1, partial [Cardamine nipponica]
gi|304571312|dbj|BAJ15774.1| cryptochrome1, partial [Cardamine nipponica]
gi|304571322|dbj|BAJ15779.1| cryptochrome1, partial [Cardamine nipponica]
gi|304571324|dbj|BAJ15780.1| cryptochrome1, partial [Cardamine nipponica]
Length = 693
Score = 1073 bits (2776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 546/686 (79%), Positives = 597/686 (87%), Gaps = 26/686 (3%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
CSIVWFRRDLRVEDNPALAA VRAG VIA+F+WAPEEEG Y+PGRVSRWWLK+SL+ LDS
Sbjct: 1 CSIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 60
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SLRSLGT L+TKRSTDSV+SLL+VVK+TGA+Q+FFNHLYDPLSLVRDHRAK+ LTAQGIA
Sbjct: 61 SLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIA 120
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
VRSFNADLLYEPW+V D G+PF+ FAAFWE+CLSMP+DP++PLLPPK+I SGD+S+C S
Sbjct: 121 VRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSKCVS 180
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
D LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP
Sbjct: 181 DPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 240
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
H HFGEVSVRKVFHLVRIKQV+WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHE
Sbjct: 241 HFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNHPYSHE 300
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
RPLLGHLKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV
Sbjct: 301 RPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 360
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
LQLPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEY
Sbjct: 361 LQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 420
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMW 485
VRRWLPEL+RLPTEWIHHPWNAPESVLQAAGIELGSNYP P++ +D AK RL EALS+MW
Sbjct: 421 VRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHEALSQMW 480
Query: 486 QQEAASRAAIENGTEEGLGDSS--DSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMV 543
Q EAASRAAIENG+EEGLGDS+ + API FP DI MEE EP R N RRYEDQMV
Sbjct: 481 QLEAASRAAIENGSEEGLGDSTEVEEAPIEFPRDITMEET-EPTRLN---PIRRYEDQMV 536
Query: 544 PSMTTSLVRVEE-EESSLELRNSAEESRAEVPRN----ANVNQEPRRDTLNQGVLQTVHN 598
PS+T+SL+R EE EESSL LRNS ESRAEVPRN N Q+PR + + V +
Sbjct: 537 PSITSSLIRPEEDEESSLNLRNSVGESRAEVPRNMVNTTNQVQQPRAEPASNQVAAMI-- 594
Query: 599 NNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIG-- 656
+FN IV + EDSTAESSS+ RRERDGG+VP WSP YSEQ +ENGIG
Sbjct: 595 ----PEFNIRIVAESTEDSTAESSSSGRRERDGGIVPEWSPG---YSEQFPSEENGIGGG 647
Query: 657 -TSSSYLQRHPQSHQIMNCRRLSQTG 681
T+SSYLQ H H+I+N RRLSQTG
Sbjct: 648 STTSSYLQNH---HEILNWRRLSQTG 670
>gi|304571306|dbj|BAJ15771.1| cryptochrome1, partial [Cardamine nipponica]
Length = 693
Score = 1072 bits (2772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/686 (79%), Positives = 597/686 (87%), Gaps = 26/686 (3%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
CSIVWFRRDLRVEDNPALAA VRAG VIA+F+WAPEEEG Y+PGRVSRWWLK+SL+ LDS
Sbjct: 1 CSIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 60
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SLRSLGT L+TKRSTDSV+SLL+VVK+TGA+Q+FFNHLYDPLSLVRDHRAK+ LTAQGIA
Sbjct: 61 SLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIA 120
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
VRSFNADLLYEPW+V D G+PF+ FAAFWE+CLSMP+DP++PLLPPK+I SGD+S+C S
Sbjct: 121 VRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSKCVS 180
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
D LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP
Sbjct: 181 DPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 240
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
H HFGEVSVRKVFHLVRIKQV+WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHE
Sbjct: 241 HFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNHPYSHE 300
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
RPLLGHLKFF W VDE YFKAWRQGRTGYPLVDAGM+ELWATGWLHDRIRVVVSSFFVKV
Sbjct: 301 RPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMKELWATGWLHDRIRVVVSSFFVKV 360
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
LQLPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEY
Sbjct: 361 LQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 420
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMW 485
VRRWLPEL+RLPTEWIHHPWNAPESVLQAAGIELGSNYP P++ +D AK RL EALS+MW
Sbjct: 421 VRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHEALSQMW 480
Query: 486 QQEAASRAAIENGTEEGLGDSS--DSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMV 543
Q EAASRAAIENG+EEGLGDS+ + API FP DI MEE EP R N RRYEDQMV
Sbjct: 481 QLEAASRAAIENGSEEGLGDSTEVEEAPIEFPRDITMEET-EPTRLN---PIRRYEDQMV 536
Query: 544 PSMTTSLVRVEE-EESSLELRNSAEESRAEVPRN----ANVNQEPRRDTLNQGVLQTVHN 598
PS+T+SL+R EE EESSL LRNS ESRAEVPRN N Q+PR + + V +
Sbjct: 537 PSITSSLIRPEEDEESSLNLRNSVGESRAEVPRNMVNTTNQVQQPRAEPASNQVAAMI-- 594
Query: 599 NNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIG-- 656
+FN IV + EDSTAESSS+ RRERDGG+VP WSP YSEQ +ENGIG
Sbjct: 595 ----PEFNIRIVAESTEDSTAESSSSGRRERDGGIVPEWSPG---YSEQFPSEENGIGGG 647
Query: 657 -TSSSYLQRHPQSHQIMNCRRLSQTG 681
T+SSYLQ H H+I+N RRLSQTG
Sbjct: 648 STTSSYLQNH---HEILNWRRLSQTG 670
>gi|304571318|dbj|BAJ15777.1| cryptochrome1, partial [Cardamine nipponica]
gi|304571320|dbj|BAJ15778.1| cryptochrome1, partial [Cardamine nipponica]
Length = 693
Score = 1072 bits (2772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/686 (79%), Positives = 596/686 (86%), Gaps = 26/686 (3%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
CSIVWFRRDLRVEDNPALAA VRAG VIA+F+WAPEEEG Y+PGRVSRWWLK+SL+ LDS
Sbjct: 1 CSIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 60
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SLRSLGT L+TKRSTDSV+SLL+VVK+TGA+Q+FFNHLYDPLSLVRDHRAK+ LTAQGIA
Sbjct: 61 SLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIA 120
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
VRSFNADLLYEPW+V D G+PF+ FAAFWE+CLSMP+DP++PLLPPK+I SGD+S+C S
Sbjct: 121 VRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSKCVS 180
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
D LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP
Sbjct: 181 DPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 240
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
H HFGEVSVRKVFHLVRIKQV+WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHE
Sbjct: 241 HFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNHPYSHE 300
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
RPLLGHLKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV
Sbjct: 301 RPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 360
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
LQLPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEY
Sbjct: 361 LQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 420
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMW 485
VRRWLPEL+RLPTEWIHHPWN PESVLQAAGIELGSNYP P++ +D AK RL EALS+MW
Sbjct: 421 VRRWLPELSRLPTEWIHHPWNTPESVLQAAGIELGSNYPRPVLGLDEAKARLHEALSQMW 480
Query: 486 QQEAASRAAIENGTEEGLGDSS--DSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMV 543
Q EAASRAAIENG+EEGLGDS+ + API FP DI MEE EP R N RRYEDQMV
Sbjct: 481 QLEAASRAAIENGSEEGLGDSTEVEEAPIEFPRDITMEET-EPTRLN---PIRRYEDQMV 536
Query: 544 PSMTTSLVRVEE-EESSLELRNSAEESRAEVPRN----ANVNQEPRRDTLNQGVLQTVHN 598
PS+T+SL+R EE EESSL LRNS ESRAEVPRN N Q+PR + + V +
Sbjct: 537 PSITSSLIRPEEDEESSLNLRNSVGESRAEVPRNMVNTTNQVQQPRAEPASNQVAAMI-- 594
Query: 599 NNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIG-- 656
+FN IV + EDSTAESSS+ RRERDGG+VP WSP YSEQ +ENGIG
Sbjct: 595 ----PEFNIRIVAESTEDSTAESSSSGRRERDGGIVPEWSPG---YSEQFPSEENGIGGG 647
Query: 657 -TSSSYLQRHPQSHQIMNCRRLSQTG 681
T+SSYLQ H H+I+N RRLSQTG
Sbjct: 648 STTSSYLQNH---HEILNWRRLSQTG 670
>gi|304571316|dbj|BAJ15776.1| cryptochrome1, partial [Cardamine nipponica]
Length = 693
Score = 1071 bits (2770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/686 (79%), Positives = 596/686 (86%), Gaps = 26/686 (3%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
CSIVWFRRDLRVEDNPALAA VRAG VIA+F+WAPEEEG Y+PGRVSRWWLK+SL+ LDS
Sbjct: 1 CSIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 60
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SLRSLGT L+TKRSTDSV+SLL+VVK+TGA+Q+FFNHLYDPLSLVRDHRAK+ LTAQGIA
Sbjct: 61 SLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIA 120
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
VRSFNADLLYEPW+V D G+PF+ FAAFWE+CLSMP+DP++PLLPPK+I SGD+ +C S
Sbjct: 121 VRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVPKCVS 180
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
D LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP
Sbjct: 181 DPLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 240
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
H HFGEVSVRKVFHLVRIKQV+WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHE
Sbjct: 241 HFHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNHPYSHE 300
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
RPLLGHLKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV
Sbjct: 301 RPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 360
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
LQLPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEY
Sbjct: 361 LQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 420
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMW 485
VRRWLPEL+RLPTEWIHHPWNAPESVLQAAGIELGSNYP P++ +D AK RL EALS+MW
Sbjct: 421 VRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHEALSQMW 480
Query: 486 QQEAASRAAIENGTEEGLGDSS--DSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMV 543
Q EAASRAAIENG+EEGLGDS+ + API FP DI MEE EP R N RRYEDQMV
Sbjct: 481 QLEAASRAAIENGSEEGLGDSTEVEEAPIEFPRDITMEET-EPTRLN---PIRRYEDQMV 536
Query: 544 PSMTTSLVRVEE-EESSLELRNSAEESRAEVPRN----ANVNQEPRRDTLNQGVLQTVHN 598
PS+T+SL+R EE EESSL LRNS ESRAEVPRN N Q+PR + + V +
Sbjct: 537 PSITSSLIRPEEDEESSLNLRNSVGESRAEVPRNMVNTTNQVQQPRAEPASNQVAAMI-- 594
Query: 599 NNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIG-- 656
+FN IV + EDSTAESSS+ RRERDGG+VP WSP YSEQ +ENGIG
Sbjct: 595 ----PEFNIRIVAESTEDSTAESSSSGRRERDGGIVPEWSPG---YSEQFPSEENGIGGG 647
Query: 657 -TSSSYLQRHPQSHQIMNCRRLSQTG 681
T+SSYLQ H H+I+N RRLSQTG
Sbjct: 648 STTSSYLQNH---HEILNWRRLSQTG 670
>gi|260765927|gb|ACX49994.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|260765929|gb|ACX49995.1| cryptochrome 1 [Capsella bursa-pastoris]
Length = 684
Score = 1065 bits (2755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/683 (79%), Positives = 595/683 (87%), Gaps = 25/683 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IVWFRRDLRVEDNPALAA VRAG VIAVF+WAPEEEG Y+PGRVSRWWLK+SL+ LDSSL
Sbjct: 18 IVWFRRDLRVEDNPALAAAVRAGPVIAVFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 77
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
RSLGT L+TKRSTDSV+SLL VVK+TGA+Q+FFNHLYDPLSLVRDHRAK+ LTAQGIAVR
Sbjct: 78 RSLGTCLITKRSTDSVASLLXVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVR 137
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
SFNADLLYEPW+V D G+PF+ F AFWE+CLSMP+DP++PLLPPK+I SGD+S+C +D
Sbjct: 138 SFNADLLYEPWEVTDELGRPFSMFGAFWERCLSMPYDPESPLLPPKKIISGDVSKCVTDP 197
Query: 188 LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHL 247
LVFED+SEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHL
Sbjct: 198 LVFEDDSEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHL 257
Query: 248 HFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERP 307
HFGEVSVRKVFHLVRIKQV+WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHERP
Sbjct: 258 HFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERP 317
Query: 308 LLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 367
LLGHLKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ
Sbjct: 318 LLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 377
Query: 368 LPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVR 427
LPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVR
Sbjct: 378 LPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVR 437
Query: 428 RWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQ 487
RWLPEL+RLPT+WIHHPWNAPESVLQAAGIELGSNYP PIV +D AK RL EALS+MWQ
Sbjct: 438 RWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHEALSQMWQL 497
Query: 488 EAASRAAIENGTEEGLGDSS--DSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPS 545
EAASRAAIENG+EEGLGDS+ + API FP DI MEE EPAR N RRYEDQMVPS
Sbjct: 498 EAASRAAIENGSEEGLGDSAEVEEAPIDFPRDITMEET-EPARLN---PIRRYEDQMVPS 553
Query: 546 MTTSLVRVEE-EESSLELRNSAEESRAEVPR---NANVNQEPRRDTLNQGVLQTVHNNNA 601
+TTSL+R EE EESSL LRNS +SRAEVPR N N Q+PR + + V +
Sbjct: 554 ITTSLIRPEEDEESSLNLRNSVGDSRAEVPRNLVNTNQAQQPRAEPASNQVTAMI----- 608
Query: 602 FQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIG---TS 658
+FN +V + EDSTAESSS+ RRERDGG+VP WSP YSEQ +ENGIG T+
Sbjct: 609 -PEFNIRLVAESTEDSTAESSSSGRRERDGGIVPEWSPG---YSEQFPSEENGIGAGSTT 664
Query: 659 SSYLQRHPQSHQIMNCRRLSQTG 681
SSYLQ H H+I+N RRLSQTG
Sbjct: 665 SSYLQNH---HEILNWRRLSQTG 684
>gi|94965681|emb|CAG28805.1| cryptochrome1 [Brassica napus]
gi|95140047|emb|CAC87903.2| cryptochrome 1 [Brassica napus]
Length = 680
Score = 1060 bits (2741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/690 (79%), Positives = 601/690 (87%), Gaps = 28/690 (4%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
G GCSIVWFRRDLRVEDNPALAA VRAG VIAVF+WAPEEEG Y PGRVSRWWLK+SL+
Sbjct: 8 GGGCSIVWFRRDLRVEDNPALAAAVRAGPVIAVFVWAPEEEGHYQPGRVSRWWLKNSLAQ 67
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
LDSSLRSLGT L+TKRSTDSV+SLLEVVK+TGA+Q+FFNHLYDPLSLVRDHRAK+ALTA+
Sbjct: 68 LDSSLRSLGTCLITKRSTDSVASLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKDALTAE 127
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
GIAV+SFNADLLYEPW+V D G+PF+ FAAFWE+CLSMP+DP++PLLPPK+I SGD+S+
Sbjct: 128 GIAVKSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSK 187
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
C +DTL+FEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF
Sbjct: 188 CVADTLIFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 247
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHLHFGEVSVRKVFHL+RIKQV+WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPY
Sbjct: 248 LSPHLHFGEVSVRKVFHLLRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNHPY 307
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
SHERPLLGHLKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF
Sbjct: 308 SHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 367
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPN
Sbjct: 368 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPN 427
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
GEYVRRWLPEL+RLPTEWIHHPWNAPESVLQAAGIELGSNYP PIV +D AK RL EALS
Sbjct: 428 GEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHEALS 487
Query: 483 EMWQQEAASRAAIENGTEEGLGDSSD--SAPIAFPPDIQMEEIPEPARNNLPTTARRYED 540
+MWQ EAASRAAIENG+EEGLGDS++ API FP DI MEE EP R N RRYED
Sbjct: 488 QMWQLEAASRAAIENGSEEGLGDSTEFVEAPIEFPRDITMEET-EPTRLN---PVRRYED 543
Query: 541 QMVPSMTTSLVRVEE-EESSLELRNSAEESRAEVPRN-ANVN----QEPRRDTLNQGVLQ 594
QMVPS+TTSL+R EE +ESSL LRNS +SRAEVPRN N N QE R D ++ V
Sbjct: 544 QMVPSITTSLIRPEEDQESSLSLRNSGGDSRAEVPRNMVNTNQARQQEARADPVSNQVTA 603
Query: 595 TVHNNNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENG 654
+ +FN IV N E+STAESSS+ RRERDGG+VP W S YSEQ +ENG
Sbjct: 604 MI------PEFNIRIVAENTEESTAESSSSGRRERDGGIVPEW----SGYSEQFASEENG 653
Query: 655 IG---TSSSYLQRHPQSHQIMNCRRLSQTG 681
IG T+SSYLQ H H+I+N RRLSQTG
Sbjct: 654 IGGGSTTSSYLQNH---HEIVNWRRLSQTG 680
>gi|260765933|gb|ACX49997.1| cryptochrome 1 [Capsella bursa-pastoris]
Length = 674
Score = 1049 bits (2713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/673 (79%), Positives = 586/673 (87%), Gaps = 25/673 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IVWFRRDLRVEDNPALAA VRAG VIAVF+WAPEEEG Y+PGRVSRWWLK+SL+ LDSSL
Sbjct: 18 IVWFRRDLRVEDNPALAAAVRAGPVIAVFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 77
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
RSLGT L+TKRSTDSV+SLLEVVK+TGA+Q+FFNHLYDPLSLVRDHRAK LTAQGIAVR
Sbjct: 78 RSLGTCLITKRSTDSVTSLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKXVLTAQGIAVR 137
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
SFNADLLYEPW+V D G+PF+ F AFWE+CLSMP+DP++PLLPPK+I SGD+S+C SD
Sbjct: 138 SFNADLLYEPWEVTDELGRPFSMFGAFWERCLSMPYDPESPLLPPKKIISGDVSKCVSDP 197
Query: 188 LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHL 247
LVFED+SEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHL
Sbjct: 198 LVFEDDSEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHL 257
Query: 248 HFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERP 307
HFGEVSVRKVFHLVRIKQV+WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHERP
Sbjct: 258 HFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERP 317
Query: 308 LLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 367
LLGHLKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ
Sbjct: 318 LLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 377
Query: 368 LPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVR 427
LPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVR
Sbjct: 378 LPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVR 437
Query: 428 RWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQ 487
RWLPEL+RLPT+WIHHPWNAPESVLQAAGIELGSNYP PIV +D AK RL EALS+MWQ
Sbjct: 438 RWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHEALSQMWQL 497
Query: 488 EAASRAAIENGTEEGLGDSS--DSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPS 545
EAASRAAIENG+EEGLGDS+ + API FP DI MEE EPAR N RRYEDQMVPS
Sbjct: 498 EAASRAAIENGSEEGLGDSAEVEEAPIDFPRDITMEET-EPARLN---PIRRYEDQMVPS 553
Query: 546 MTTSLVRVEE-EESSLELRNSAEESRAEVPR---NANVNQEPRRDTLNQGVLQTVHNNNA 601
+T+SL+R EE EESSL LRNS +SRAEVPR N N Q+PR + + V +
Sbjct: 554 ITSSLLRPEEDEESSLNLRNSVGDSRAEVPRNLVNTNQAQQPRAEPASNQVTAMI----- 608
Query: 602 FQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIG---TS 658
+FN +V + EDSTAESSS+ RRERDGG+VP WSP YSEQ +ENG+G T+
Sbjct: 609 -PEFNIRLVAESTEDSTAESSSSGRRERDGGIVPEWSPG---YSEQFPSEENGMGAGSTT 664
Query: 659 SSYLQRHPQSHQI 671
SSYLQ H H+I
Sbjct: 665 SSYLQNH---HEI 674
>gi|113197027|gb|ABI31780.1| cryptochrome 1 protein [Brassica rapa]
Length = 704
Score = 1047 bits (2708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/714 (76%), Positives = 601/714 (84%), Gaps = 52/714 (7%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
G GCSIVWFRRDLRVEDNPALAA VRAG VIAVF+WAPEEEG Y PGRVSRWWLK+SL+
Sbjct: 8 GGGCSIVWFRRDLRVEDNPALAAAVRAGPVIAVFVWAPEEEGHYQPGRVSRWWLKNSLAQ 67
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
LDSSLRSLGT L+TKRSTDSV+SLLEVVK+TGA+Q+FFNHLYDPLSLVRDHRAK+ALTA+
Sbjct: 68 LDSSLRSLGTCLITKRSTDSVASLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKDALTAE 127
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSG---- 178
GIAV+SFNADLLYEPW+V D G+PF+ FAAFWE+CLSMP+DP++PLLPPK+I SG
Sbjct: 128 GIAVKSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGLLLH 187
Query: 179 --------------------DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALT 218
D+S+C +DTL+FEDESEKGSNALLARAWSPGWSNADKALT
Sbjct: 188 HTLSEIVSYPLLITLFVLAGDVSKCVADTLIFEDESEKGSNALLARAWSPGWSNADKALT 247
Query: 219 TFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDE 278
TFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHL+RIKQV+WANEGN+AG+E
Sbjct: 248 TFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLLRIKQVAWANEGNQAGEE 307
Query: 279 SVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVD 338
SVNLFLKSIGLREYSRY+SFNHPYSHERPLLGHLKFF W VDE YFKAWRQGRTGYPLVD
Sbjct: 308 SVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVD 367
Query: 339 AGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISG 398
AGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYI+G
Sbjct: 368 AGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITG 427
Query: 399 TIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIE 458
T+PD R FDRIDNPQFEGYKFDPNGEYVRRWLPEL+RLPTEWIHHPWNAPESVLQAAGIE
Sbjct: 428 TLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIE 487
Query: 459 LGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSD--SAPIAFPP 516
LGSNYP PIV +D AK RL EALS+MWQ EAASRAAIENG+EEGLGDS++ API FP
Sbjct: 488 LGSNYPRPIVGLDEAKARLHEALSQMWQLEAASRAAIENGSEEGLGDSTEFVEAPIEFPR 547
Query: 517 DIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEE-EESSLELRNSAEESRAEVPR 575
DI MEE EP R N RRYEDQMVPS+TTSL+R EE +ESSL LRNS +SRAEVPR
Sbjct: 548 DITMEET-EPTRLN---PVRRYEDQMVPSITTSLIRPEEDQESSLSLRNSGGDSRAEVPR 603
Query: 576 N-ANVN----QEPRRDTLNQGVLQTVHNNNAFQQFNAAIVLANAEDSTAESSSTSRRERD 630
N N N QE R D ++ V + +FN IV N E+STAESSS+ RRERD
Sbjct: 604 NMVNTNQARQQEARADPVSNQVTAMI------PEFNIRIVAENTEESTAESSSSGRRERD 657
Query: 631 GGVVPVWSPATSSYSEQLVGDENGIG---TSSSYLQRHPQSHQIMNCRRLSQTG 681
GG+VP W S YSEQ +ENGIG T+S+YLQ H H+I+N RRLSQTG
Sbjct: 658 GGIVPEW----SGYSEQFASEENGIGGGSTTSTYLQNH---HEIVNWRRLSQTG 704
>gi|260765931|gb|ACX49996.1| cryptochrome 1 [Capsella bursa-pastoris]
Length = 660
Score = 1038 bits (2685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/655 (80%), Positives = 575/655 (87%), Gaps = 19/655 (2%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IVWFRRDLRVEDNPALAA VRAG VIAVF+WAPEEEG Y+PGRVSRWWLK+SL+ LDSSL
Sbjct: 18 IVWFRRDLRVEDNPALAAAVRAGPVIAVFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 77
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
RSLGT L+TKRSTDSV+SLLEVVK+TGA+Q+FFNHLYDPLSLVRDHRAK LTAQGIAVR
Sbjct: 78 RSLGTCLITKRSTDSVTSLLEVVKSTGASQIFFNHLYDPLSLVRDHRAKXVLTAQGIAVR 137
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
SFNADLLYEPW+V D G+PF+ F AFWE+CLSMP+DP++PLLPPK+I SGD+S+C +D
Sbjct: 138 SFNADLLYEPWEVTDELGRPFSMFGAFWERCLSMPYDPESPLLPPKKIISGDVSKCVTDP 197
Query: 188 LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHL 247
LVFED+SEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHL
Sbjct: 198 LVFEDDSEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHL 257
Query: 248 HFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERP 307
HFGEVSVRKVFHLVRIKQV+WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHERP
Sbjct: 258 HFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERP 317
Query: 308 LLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 367
LLGHLKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ
Sbjct: 318 LLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 377
Query: 368 LPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVR 427
LPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVR
Sbjct: 378 LPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVR 437
Query: 428 RWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQ 487
RWLPEL+RLPT+WIHHPWNAPESVLQAAGIELGSNYP PIV +D AK RL EALS+MWQ
Sbjct: 438 RWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHEALSQMWQL 497
Query: 488 EAASRAAIENGTEEGLGDSS--DSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPS 545
EAASRAAIENG+EEGLGDS+ + API FP DI MEE EPAR N RRYEDQMVPS
Sbjct: 498 EAASRAAIENGSEEGLGDSAEVEEAPIDFPRDITMEET-EPARLN---PIRRYEDQMVPS 553
Query: 546 MTTSLVRVEE-EESSLELRNSAEESRAEVPR---NANVNQEPRRDTLNQGVLQTVHNNNA 601
+T+SL+R EE EESSL LRNS +SRAEVPR N N Q+PR + + V +
Sbjct: 554 ITSSLLRPEEDEESSLNLRNSVGDSRAEVPRNLVNTNQAQQPRAEPASNQVTAMI----- 608
Query: 602 FQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIG 656
+FN +V + EDSTAESSS+ RRERDGG+VP WSP YSEQ +ENG+G
Sbjct: 609 -PEFNIRLVAESTEDSTAESSSSGRRERDGGIVPEWSPG---YSEQFPSEENGMG 659
>gi|7267534|emb|CAB78016.1| Arabidopsis thaliana flavin-type blue-light photoreceptor
(SW:Q43125) (Pfam: PF00875, Score=765.2, E=2.6e-226,
N=1)
Length = 716
Score = 1035 bits (2675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/681 (79%), Positives = 591/681 (86%), Gaps = 21/681 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IVWFRRDLRVEDNPALAA VRAG VIA+F+WAPEEEG Y+PGRVSRWWLK+SL+ LDSSL
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 74
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
RSLGT L+TKRSTDSV+SLL+VVK+TGA+Q+FFNHLYDPLSLVRDHRAK+ LTAQGIAVR
Sbjct: 75 RSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVR 134
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
SFNADLLYEPW+V D G+PF+ FAAFWE+CLSMP+DP++PLLPPK+I SGD+S+C +D
Sbjct: 135 SFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSKCVADP 194
Query: 188 LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHL 247
LVFED+SEKGSNALLARAWSPGWSN DKALTTFINGPL+EYSKNRRKADSATTSFLSPHL
Sbjct: 195 LVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHL 254
Query: 248 HFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERP 307
HFGEVSVRKVFHLVRIKQV+WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHERP
Sbjct: 255 HFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERP 314
Query: 308 LLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 367
LLGHLKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ
Sbjct: 315 LLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 374
Query: 368 LPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVR 427
LPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVR
Sbjct: 375 LPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVR 434
Query: 428 RWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQ 487
RWLPEL+RLPT+WIHHPWNAPESVLQAAGIELGSNYP PIV +D AK RL EALS+MWQ
Sbjct: 435 RWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQL 494
Query: 488 EAASRAAIENGTEEGLGDSS--DSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPS 545
EAASRAAIENG+EEGLGDS+ + API FP DI MEE EP R N RRYEDQMVPS
Sbjct: 495 EAASRAAIENGSEEGLGDSAEVEEAPIEFPRDITMEET-EPTRLN---PNRRYEDQMVPS 550
Query: 546 MTTSLVRVEE-EESSLELRNSAEESRAEVPRN-ANVNQEPRRDTLNQGVLQTVHNNNAFQ 603
+T+SL+R EE EESSL LRNS +SRAEVPRN N NQ +R T
Sbjct: 551 ITSSLIRPEEDEESSLNLRNSVGDSRAEVPRNMVNTNQAQQRRAEPASNQVTA----MIP 606
Query: 604 QFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIG---TSSS 660
+FN IV + EDSTAESSS+ RRER GG+VP WSP YSEQ +ENGIG T+SS
Sbjct: 607 EFNIRIVAESTEDSTAESSSSGRRERSGGIVPEWSPG---YSEQFPSEENGIGGGSTTSS 663
Query: 661 YLQRHPQSHQIMNCRRLSQTG 681
YLQ H H+I+N RRLSQTG
Sbjct: 664 YLQNH---HEILNWRRLSQTG 681
>gi|18413170|ref|NP_567341.1| cryptochrome-1 [Arabidopsis thaliana]
gi|332278156|sp|Q43125.2|CRY1_ARATH RecName: Full=Cryptochrome-1; AltName: Full=Blue light
photoreceptor; AltName: Full=Protein BLUE LIGHT
UNINHIBITED 1; AltName: Full=Protein ELONGATED HYPOCOTYL
4; AltName: Full=Protein OUT OF PHASE 2; Short=OOP2
gi|21700897|gb|AAM70572.1| AT4g08920/hy4 [Arabidopsis thaliana]
gi|332657296|gb|AEE82696.1| cryptochrome-1 [Arabidopsis thaliana]
Length = 681
Score = 1035 bits (2675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/681 (79%), Positives = 591/681 (86%), Gaps = 21/681 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IVWFRRDLRVEDNPALAA VRAG VIA+F+WAPEEEG Y+PGRVSRWWLK+SL+ LDSSL
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 74
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
RSLGT L+TKRSTDSV+SLL+VVK+TGA+Q+FFNHLYDPLSLVRDHRAK+ LTAQGIAVR
Sbjct: 75 RSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVR 134
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
SFNADLLYEPW+V D G+PF+ FAAFWE+CLSMP+DP++PLLPPK+I SGD+S+C +D
Sbjct: 135 SFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSKCVADP 194
Query: 188 LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHL 247
LVFED+SEKGSNALLARAWSPGWSN DKALTTFINGPL+EYSKNRRKADSATTSFLSPHL
Sbjct: 195 LVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHL 254
Query: 248 HFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERP 307
HFGEVSVRKVFHLVRIKQV+WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHERP
Sbjct: 255 HFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERP 314
Query: 308 LLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 367
LLGHLKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ
Sbjct: 315 LLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 374
Query: 368 LPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVR 427
LPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVR
Sbjct: 375 LPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVR 434
Query: 428 RWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQ 487
RWLPEL+RLPT+WIHHPWNAPESVLQAAGIELGSNYP PIV +D AK RL EALS+MWQ
Sbjct: 435 RWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQL 494
Query: 488 EAASRAAIENGTEEGLGDSS--DSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPS 545
EAASRAAIENG+EEGLGDS+ + API FP DI MEE EP R N RRYEDQMVPS
Sbjct: 495 EAASRAAIENGSEEGLGDSAEVEEAPIEFPRDITMEET-EPTRLN---PNRRYEDQMVPS 550
Query: 546 MTTSLVRVEE-EESSLELRNSAEESRAEVPRN-ANVNQEPRRDTLNQGVLQTVHNNNAFQ 603
+T+SL+R EE EESSL LRNS +SRAEVPRN N NQ +R T
Sbjct: 551 ITSSLIRPEEDEESSLNLRNSVGDSRAEVPRNMVNTNQAQQRRAEPASNQVTA----MIP 606
Query: 604 QFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIG---TSSS 660
+FN IV + EDSTAESSS+ RRER GG+VP WSP YSEQ +ENGIG T+SS
Sbjct: 607 EFNIRIVAESTEDSTAESSSSGRRERSGGIVPEWSPG---YSEQFPSEENGIGGGSTTSS 663
Query: 661 YLQRHPQSHQIMNCRRLSQTG 681
YLQ H H+I+N RRLSQTG
Sbjct: 664 YLQNH---HEILNWRRLSQTG 681
>gi|304571326|dbj|BAJ15781.1| cryptochrome1, partial [Cardamine alpina]
Length = 681
Score = 1034 bits (2673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/682 (78%), Positives = 588/682 (86%), Gaps = 30/682 (4%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
CSIVWFRRDLRVEDNPALAA VRAG VIA+F+WAPEEEG Y+PGRVSRWWLK+SL+ LDS
Sbjct: 1 CSIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDS 60
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SLRSLGT L+TKRSTDSV+SLL+VVK+TGA+Q+FFNHLYDPLSLVRDHRAK+ LTAQGIA
Sbjct: 61 SLRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIA 120
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
VRSFNADLLYEPW+V D G+PF+ FAAFWE+CLSMP+DP++PLLPPK+I SGD+S+C S
Sbjct: 121 VRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSKCVS 180
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
D LVFEDE EKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP
Sbjct: 181 DPLVFEDELEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 240
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
HLHFGEVSVRKVFHLVRIKQV+WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHE
Sbjct: 241 HLHFGEVSVRKVFHLVRIKQVAWANEGNQAGEESVNLFLKSIGLREYSRYISFNHPYSHE 300
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
RPLLGHLKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV
Sbjct: 301 RPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 360
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
LQLPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEY
Sbjct: 361 LQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEY 420
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMW 485
VRRWLPEL+RLPTEWIHHPWNAPESVLQAAGIELGSNYP P++ +D AK RL EALS+MW
Sbjct: 421 VRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPRPVLGLDEAKARLHEALSQMW 480
Query: 486 QQEAASRAAIENGTEEGLGDSS--DSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMV 543
Q EAASRAAIENG+EEGLGDS+ + API FP DI MEE EP R N RRYEDQMV
Sbjct: 481 QLEAASRAAIENGSEEGLGDSTEVEEAPIEFPRDITMEET-EPTRLN---PIRRYEDQMV 536
Query: 544 PSMTTSLVRVEE-EESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNNAF 602
PS+T+SL+R EE EESSL LRN + N Q+PR + + V +
Sbjct: 537 PSITSSLIRPEEDEESSLNLRNMVNTT--------NQVQQPRAEPASNQVAAMI------ 582
Query: 603 QQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIG---TSS 659
+FN IV + EDSTAESSS+ RRERDGG+VP WSP YSEQ +ENGIG T+S
Sbjct: 583 PEFNIRIVAESTEDSTAESSSSRRRERDGGIVPEWSPG---YSEQFPSEENGIGGGSTTS 639
Query: 660 SYLQRHPQSHQIMNCRRLSQTG 681
SYLQ H H+I+N RRLSQTG
Sbjct: 640 SYLQNH---HEILNWRRLSQTG 658
>gi|13605525|gb|AAK32756.1|AF361588_1 AT4g08920/hy4 [Arabidopsis thaliana]
Length = 681
Score = 1032 bits (2668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/681 (79%), Positives = 590/681 (86%), Gaps = 21/681 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IVWFRRDLRVEDNPALAA VRAG V A+F+WAPEEEG Y+PGRVSRWWLK+SL+ LDSSL
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAGPVNALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 74
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
RSLGT L+TKRSTDSV+SLL+VVK+TGA+Q+FFNHLYDPLSLVRDHRAK+ LTAQGIAVR
Sbjct: 75 RSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVR 134
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
SFNADLLYEPW+V D G+PF+ FAAFWE+CLSMP+DP++PLLPPK+I SGD+S+C +D
Sbjct: 135 SFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSKCVADP 194
Query: 188 LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHL 247
LVFED+SEKGSNALLARAWSPGWSN DKALTTFINGPL+EYSKNRRKADSATTSFLSPHL
Sbjct: 195 LVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHL 254
Query: 248 HFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERP 307
HFGEVSVRKVFHLVRIKQV+WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHERP
Sbjct: 255 HFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERP 314
Query: 308 LLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 367
LLGHLKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ
Sbjct: 315 LLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 374
Query: 368 LPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVR 427
LPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVR
Sbjct: 375 LPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVR 434
Query: 428 RWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQ 487
RWLPEL+RLPT+WIHHPWNAPESVLQAAGIELGSNYP PIV +D AK RL EALS+MWQ
Sbjct: 435 RWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQL 494
Query: 488 EAASRAAIENGTEEGLGDSS--DSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPS 545
EAASRAAIENG+EEGLGDS+ + API FP DI MEE EP R N RRYEDQMVPS
Sbjct: 495 EAASRAAIENGSEEGLGDSAEVEEAPIEFPRDITMEET-EPTRLN---PNRRYEDQMVPS 550
Query: 546 MTTSLVRVEE-EESSLELRNSAEESRAEVPRN-ANVNQEPRRDTLNQGVLQTVHNNNAFQ 603
+T+SL+R EE EESSL LRNS +SRAEVPRN N NQ +R T
Sbjct: 551 ITSSLIRPEEDEESSLNLRNSVGDSRAEVPRNMVNTNQAQQRRAEPASNQVTA----MIP 606
Query: 604 QFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIG---TSSS 660
+FN IV + EDSTAESSS+ RRER GG+VP WSP YSEQ +ENGIG T+SS
Sbjct: 607 EFNIRIVAESTEDSTAESSSSGRRERSGGIVPEWSPG---YSEQFPSEENGIGGGSTTSS 663
Query: 661 YLQRHPQSHQIMNCRRLSQTG 681
YLQ H H+I+N RRLSQTG
Sbjct: 664 YLQNH---HEILNWRRLSQTG 681
>gi|442529|gb|AAB28724.1| flavin-type blue-light photoreceptor [Arabidopsis thaliana]
Length = 681
Score = 1031 bits (2667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 539/681 (79%), Positives = 590/681 (86%), Gaps = 21/681 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IVWFRRDLRVEDNPALAA VRAG VIA+F+WAPEEEG Y+PGRVSRWWLK+SL+ LDSSL
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 74
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
RSLGT L+TKRSTDSV+SLL+VVK+TGA+Q+FFNHLYDPLSLVRDHRAK+ LTAQGIAVR
Sbjct: 75 RSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVR 134
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
SFNADLLYEPW+V D G+PF+ FAAFWE+CLSMP+DP++PLLPPK+I SGD+S+C +D
Sbjct: 135 SFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSKCVADP 194
Query: 188 LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHL 247
LVFED+SEKGSNALLARAWSPGWSN DKALTTFINGPL+EYSKNRRKADSATTSFLSPHL
Sbjct: 195 LVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHL 254
Query: 248 HFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERP 307
HFGEVSVRKVFHLVRIKQV+WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHERP
Sbjct: 255 HFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERP 314
Query: 308 LLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 367
LLGHLKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ
Sbjct: 315 LLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 374
Query: 368 LPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVR 427
LPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVR
Sbjct: 375 LPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVR 434
Query: 428 RWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQ 487
RWLPEL+RLPT+WIHHPWNAPESVLQAAGIELGSNYP PIV +D AK RL EALS+MWQ
Sbjct: 435 RWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQL 494
Query: 488 EAASRAAIENGTEEGLGDSS--DSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPS 545
EAASRAAIENG+EEGLGDS+ + API FP DI MEE EP R N RRYEDQMVPS
Sbjct: 495 EAASRAAIENGSEEGLGDSAEVEEAPIEFPRDITMEET-EPTRLN---PNRRYEDQMVPS 550
Query: 546 MTTSLVRVEE-EESSLELRNSAEESRAEVPRN-ANVNQEPRRDTLNQGVLQTVHNNNAFQ 603
+T+SL+R EE EESSL LRNS +SRAEVPRN N NQ +R T
Sbjct: 551 ITSSLIRPEEDEESSLNLRNSVGDSRAEVPRNMVNTNQAQQRRAEPASNQVTA----MIP 606
Query: 604 QFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIG---TSSS 660
+FN IV + EDSTAESSS+ RRER GG+VP WSP YSEQ +EN IG T+SS
Sbjct: 607 EFNIRIVAESTEDSTAESSSSGRRERSGGIVPEWSPG---YSEQFPSEENRIGGGSTTSS 663
Query: 661 YLQRHPQSHQIMNCRRLSQTG 681
YLQ H H+I+N RRLSQTG
Sbjct: 664 YLQNH---HEILNWRRLSQTG 681
>gi|738308|prf||1924377A blue light photoreceptor
Length = 681
Score = 1031 bits (2665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/681 (79%), Positives = 590/681 (86%), Gaps = 21/681 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IVWFRRDLRVEDNPALAA VRAG VIA+F+WAPEEEG Y+PGRVSRWWLK+SL+ LDSSL
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 74
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
RSLGT L+TKRSTDSV+SLL+VVK+TGA+Q+FFNHLYDPLSLVRDHRAK+ LTAQGIAVR
Sbjct: 75 RSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVR 134
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
SFNADLLY+PW+V D G+PF+ FAAFWE+CLSMP+DP++PLLPPK+I SGD+S+C +D
Sbjct: 135 SFNADLLYQPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSKCVADP 194
Query: 188 LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHL 247
LVFED+SEKGSNALLARAWSPGWSN DKALTTFINGPL+EYSKNRRKADSATTSFLSPHL
Sbjct: 195 LVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHL 254
Query: 248 HFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERP 307
HFGEVSVRKVFHLVRIKQV+WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHERP
Sbjct: 255 HFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERP 314
Query: 308 LLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 367
LLGHLKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ
Sbjct: 315 LLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 374
Query: 368 LPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVR 427
LPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVR
Sbjct: 375 LPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVR 434
Query: 428 RWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQ 487
RWLPEL+RLPT+WIHHPWNAPESVLQAAGIELGSNYP PIV +D AK RL EALS+MWQ
Sbjct: 435 RWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQL 494
Query: 488 EAASRAAIENGTEEGLGDSS--DSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPS 545
EAASRAAIENG+EEGLGDS+ + API FP DI MEE EP R N RRYEDQMVPS
Sbjct: 495 EAASRAAIENGSEEGLGDSAEVEEAPIEFPRDITMEET-EPTRLN---PNRRYEDQMVPS 550
Query: 546 MTTSLVRVEE-EESSLELRNSAEESRAEVPRN-ANVNQEPRRDTLNQGVLQTVHNNNAFQ 603
+T+SL+R EE EESSL LRNS +SRAEVPRN N NQ +R T
Sbjct: 551 ITSSLIRPEEDEESSLNLRNSVGDSRAEVPRNMVNTNQAQQRRAEPASNQVTA----MIP 606
Query: 604 QFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIG---TSSS 660
+FN IV + EDSTAESSS+ RRER GG+VP WSP YSEQ +EN IG T+SS
Sbjct: 607 EFNIRIVAESTEDSTAESSSSGRRERSGGIVPEWSPG---YSEQFPSEENRIGGGSTTSS 663
Query: 661 YLQRHPQSHQIMNCRRLSQTG 681
YLQ H H+I+N RRLSQTG
Sbjct: 664 YLQNH---HEILNWRRLSQTG 681
>gi|327342148|gb|AEA50861.1| cry1-2 [Populus tremula]
Length = 576
Score = 1028 bits (2658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/576 (86%), Positives = 534/576 (92%)
Query: 106 PLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDP 165
PLSLVRDHRAKE LTAQGIAVRSFNADLLYEPWDVNDAQG+PF TFA FW++CLSMPFDP
Sbjct: 1 PLSLVRDHRAKEVLTAQGIAVRSFNADLLYEPWDVNDAQGRPFTTFATFWDRCLSMPFDP 60
Query: 166 DAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPL 225
+APLLPPKRI SGD SRCPS+ LVFEDESEKGSNALLARAWSPGWSNAD+ALTTFINGPL
Sbjct: 61 EAPLLPPKRIISGDASRCPSEMLVFEDESEKGSNALLARAWSPGWSNADRALTTFINGPL 120
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQV WANEGNKAG+ESVNLFLK
Sbjct: 121 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLK 180
Query: 286 SIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELW 345
SIGLREYSRY+SFNHPYSHERPLLGHLKFF WVVDEGYFKAWRQGRTGYPLVDAGMRELW
Sbjct: 181 SIGLREYSRYLSFNHPYSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELW 240
Query: 346 ATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRA 405
ATGWLHDRIRVVV+SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PDGR
Sbjct: 241 ATGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDGRE 300
Query: 406 FDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPF 465
FDRIDNPQFEGYKFDPNGEYVRRWLPELARLPT+WIHHPWNAPESVLQAAGIELGSNYP
Sbjct: 301 FDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTDWIHHPWNAPESVLQAAGIELGSNYPL 360
Query: 466 PIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPE 525
PIV IDAAK RL+EALSEMWQQEAASRAAIENGTEEGLGDSS+SAPIAFP DI MEE E
Sbjct: 361 PIVGIDAAKVRLEEALSEMWQQEAASRAAIENGTEEGLGDSSESAPIAFPQDINMEENHE 420
Query: 526 PARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRR 585
P RNN P T RRYEDQMVPSMT+S +R+E+EE+S ++RNS + RAEVPR+ N+NQ+PRR
Sbjct: 421 PVRNNPPATNRRYEDQMVPSMTSSFLRIEDEETSSDVRNSTGDGRAEVPRDVNLNQQPRR 480
Query: 586 DTLNQGVLQTVHNNNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYS 645
DTLNQG +Q+VHN+N+ FN LAN EDSTAESSS+SRRERDGG+VPVWSP T SYS
Sbjct: 481 DTLNQGFVQSVHNDNSLPPFNILRGLANVEDSTAESSSSSRRERDGGIVPVWSPPTPSYS 540
Query: 646 EQLVGDENGIGTSSSYLQRHPQSHQIMNCRRLSQTG 681
EQ VGDENGIG +SSYL RHPQSHQI+N RRL QTG
Sbjct: 541 EQFVGDENGIGATSSYLPRHPQSHQILNWRRLPQTG 576
>gi|297813243|ref|XP_002874505.1| hypothetical protein ARALYDRAFT_327070 [Arabidopsis lyrata subsp.
lyrata]
gi|297320342|gb|EFH50764.1| hypothetical protein ARALYDRAFT_327070 [Arabidopsis lyrata subsp.
lyrata]
Length = 690
Score = 1022 bits (2642), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/682 (78%), Positives = 591/682 (86%), Gaps = 21/682 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IVWFRRDLRVEDNPALAA VRAG VIA+F+WAPEEEG Y+PGRVSRWWLK+SL+ LDSS
Sbjct: 14 NIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSS 73
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
LRSLGT L+TKRSTDSV+SLL+VVK+TGA+Q+FFNHLYDPLSLVRDHRAK+ LTAQGIAV
Sbjct: 74 LRSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAV 133
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
RSFNADLLYEPW+V D G+PF+ FAAFWE+CLSMP+DP++PLLPPK+I SGD+S+C SD
Sbjct: 134 RSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSKCVSD 193
Query: 187 TLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPH 246
LVFED+SE+GSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPH
Sbjct: 194 PLVFEDDSERGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPH 253
Query: 247 LHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHER 306
LHFGEVSVRKVFHLVRIKQV+WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHER
Sbjct: 254 LHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHER 313
Query: 307 PLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVL 366
PLLGHLKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVL
Sbjct: 314 PLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVL 373
Query: 367 QLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYV 426
QLPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYV
Sbjct: 374 QLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYV 433
Query: 427 RRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQ 486
RRWLPEL+RLPT+WIHHPWNAPESVLQAAGIELGSNYP PIV +D AK RL EALS+MWQ
Sbjct: 434 RRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARLHEALSQMWQ 493
Query: 487 QEAASRAAIENGTEEGLGDSS--DSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVP 544
EAASRAAIENG+EEGLGDS+ + API FP DI MEE EP R N RRYEDQMVP
Sbjct: 494 LEAASRAAIENGSEEGLGDSAEVEEAPIEFPRDITMEET-EPTRLN---PNRRYEDQMVP 549
Query: 545 SMTTSLVRVEE-EESSLELRNSAEESRAEVPRN-ANVNQEPRRDTLNQGVLQTVHNNNAF 602
S+T+SL+R EE EESSL LRNS +SRAEVPRN N NQ +R T
Sbjct: 550 SITSSLIRPEEDEESSLNLRNSVGDSRAEVPRNMVNTNQAQQRRAEPASNQVTA----MI 605
Query: 603 QQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDEN---GIGTSS 659
+FN I+ + EDSTAESSS+ RRER GG+VP WSP YSEQ +EN G ++S
Sbjct: 606 PEFNIRIIAESTEDSTAESSSSGRRERSGGIVPEWSPG---YSEQFPSEENGIGGGSSTS 662
Query: 660 SYLQRHPQSHQIMNCRRLSQTG 681
SYLQ H H+I+N RRLSQTG
Sbjct: 663 SYLQNH---HEILNWRRLSQTG 681
>gi|4325368|gb|AAD17364.1| Arabidopsis thaliana flavin-type blue-light photoreceptor
(SW:Q43125) (Pfam: PF00875, Score=765.2, E=2.6e-226,
N=1) [Arabidopsis thaliana]
Length = 702
Score = 998 bits (2579), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/681 (77%), Positives = 577/681 (84%), Gaps = 35/681 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IVWFRRDLRVEDNPALAA VRAG VIA+F+WAPEEEG Y+PGRVSRWWLK+SL+ LDSSL
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 74
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
RSLGT L+TKRSTDSV+SLL+VVK+TGA+Q+FFNHLYDPLSLVRDHRAK+ LTAQGIAVR
Sbjct: 75 RSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVR 134
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
SFNADLLYEPW+V D G+PF+ FAAFWE+CLSMP+DP++PLLPPK+I SGD+S+C +D
Sbjct: 135 SFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSKCVADP 194
Query: 188 LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHL 247
LVFED+SEKGSNALLARAWSPGWSN DKALTTFINGPL+EYSKNRRKADSATTSFLSPHL
Sbjct: 195 LVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHL 254
Query: 248 HFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERP 307
HFGEV+ WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHERP
Sbjct: 255 HFGEVA--------------WANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERP 300
Query: 308 LLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 367
LLGHLKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ
Sbjct: 301 LLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 360
Query: 368 LPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVR 427
LPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVR
Sbjct: 361 LPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVR 420
Query: 428 RWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQ 487
RWLPEL+RLPT+WIHHPWNAPESVLQAAGIELGSNYP PIV +D AK RL EALS+MWQ
Sbjct: 421 RWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQL 480
Query: 488 EAASRAAIENGTEEGLGDSS--DSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPS 545
EAASRAAIENG+EEGLGDS+ + API FP DI MEE EP R N RRYEDQMVPS
Sbjct: 481 EAASRAAIENGSEEGLGDSAEVEEAPIEFPRDITMEET-EPTRLN---PNRRYEDQMVPS 536
Query: 546 MTTSLVRVEE-EESSLELRNSAEESRAEVPRN-ANVNQEPRRDTLNQGVLQTVHNNNAFQ 603
+T+SL+R EE EESSL LRNS +SRAEVPRN N NQ +R T
Sbjct: 537 ITSSLIRPEEDEESSLNLRNSVGDSRAEVPRNMVNTNQAQQRRAEPASNQVTA----MIP 592
Query: 604 QFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIG---TSSS 660
+FN IV + EDSTAESSS+ RRER GG+VP WSP YSEQ +ENGIG T+SS
Sbjct: 593 EFNIRIVAESTEDSTAESSSSGRRERSGGIVPEWSPG---YSEQFPSEENGIGGGSTTSS 649
Query: 661 YLQRHPQSHQIMNCRRLSQTG 681
YLQ H H+I+N RRLSQTG
Sbjct: 650 YLQNH---HEILNWRRLSQTG 667
>gi|115458700|ref|NP_001052950.1| Os04g0452100 [Oryza sativa Japonica Group]
gi|113564521|dbj|BAF14864.1| Os04g0452100 [Oryza sativa Japonica Group]
gi|218194950|gb|EEC77377.1| hypothetical protein OsI_16111 [Oryza sativa Indica Group]
Length = 700
Score = 936 bits (2419), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/687 (70%), Positives = 558/687 (81%), Gaps = 20/687 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFRRDLRVEDNPALAA RAG V+ ++WAPEE+GPYYPGRVSRWWL SL HLD+
Sbjct: 20 TVVWFRRDLRVEDNPALAAAARAGGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 79
Query: 66 SLRSLGT-SLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
SLR LG LVT+RS D+V +LL++V+ TGAT+LFFNHLYDP+SLVRDHR KE + A+GI
Sbjct: 80 SLRRLGAGKLVTRRSADAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAAEGI 139
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V+SFNADLLYEPW+V D +GQ F FA FW +CLSMP+DP APLLPPKRINSGD+S CP
Sbjct: 140 IVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSGDLSMCP 199
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
SD L+FED+SE+GSNALLARAWSPGW NADKALT F+NGPLI YS NR+KADSA+TS LS
Sbjct: 200 SDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTSLLS 259
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
P+LHFGE+SVRKVFHLVR+KQ+ W+NEGN+A +ES LFL+SIGLREYSRY+SFNHP SH
Sbjct: 260 PYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNHPCSH 319
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
E+PLL HL+FF WV++E YFK WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK
Sbjct: 320 EKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 379
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
VLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++PDGR DRIDNPQ EGYKFDP+GE
Sbjct: 380 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFDPHGE 439
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
YVRRWLPELARLPTEWIHHPW+AP SVLQAAG+ELGSNYP PIV +DAA RL EALSEM
Sbjct: 440 YVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEALSEM 499
Query: 485 WQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPAR--NNLPTTARRYEDQM 542
WQ EAASRAA++NG EEGLGDSS+ PI FP ++QME EPAR N+ TTARR EDQM
Sbjct: 500 WQLEAASRAAMDNGMEEGLGDSSEVPPIEFPRELQMEVDREPARVTANVLTTARRREDQM 559
Query: 543 VPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRD------TLNQGVLQT- 595
VP+MT+SL R E E S+ + NS +SRAEVP VN EPR + T V +T
Sbjct: 560 VPTMTSSLNRAETEISA-DFMNSV-DSRAEVP--TRVNFEPRTEREENFRTTAGNVARTN 615
Query: 596 -VHNNNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWS-PATSSYSEQLVGDEN 653
+H +N FQQ + N + +S+ R+GGVVPVWS PA S +SE DE
Sbjct: 616 GIHEHNNFQQPQHR--MRNVLAPSVSEASSGWTGREGGVVPVWSPPAASDHSETFASDEA 673
Query: 654 GIGTSSSYLQRHPQSHQIMNCRRLSQT 680
I +S SYL RHPQSH++MN +LSQ+
Sbjct: 674 DI-SSRSYLDRHPQSHRLMNWSQLSQS 699
>gi|21740729|emb|CAD40850.1| OSJNBa0086B14.23 [Oryza sativa Japonica Group]
gi|116310174|emb|CAH67187.1| H0815C01.8 [Oryza sativa Indica Group]
Length = 693
Score = 936 bits (2419), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/687 (70%), Positives = 558/687 (81%), Gaps = 20/687 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFRRDLRVEDNPALAA RAG V+ ++WAPEE+GPYYPGRVSRWWL SL HLD+
Sbjct: 13 TVVWFRRDLRVEDNPALAAAARAGGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 72
Query: 66 SLRSLGT-SLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
SLR LG LVT+RS D+V +LL++V+ TGAT+LFFNHLYDP+SLVRDHR KE + A+GI
Sbjct: 73 SLRRLGAGKLVTRRSADAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAAEGI 132
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V+SFNADLLYEPW+V D +GQ F FA FW +CLSMP+DP APLLPPKRINSGD+S CP
Sbjct: 133 IVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSGDLSMCP 192
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
SD L+FED+SE+GSNALLARAWSPGW NADKALT F+NGPLI YS NR+KADSA+TS LS
Sbjct: 193 SDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTSLLS 252
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
P+LHFGE+SVRKVFHLVR+KQ+ W+NEGN+A +ES LFL+SIGLREYSRY+SFNHP SH
Sbjct: 253 PYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNHPCSH 312
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
E+PLL HL+FF WV++E YFK WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK
Sbjct: 313 EKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 372
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
VLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++PDGR DRIDNPQ EGYKFDP+GE
Sbjct: 373 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFDPHGE 432
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
YVRRWLPELARLPTEWIHHPW+AP SVLQAAG+ELGSNYP PIV +DAA RL EALSEM
Sbjct: 433 YVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEALSEM 492
Query: 485 WQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPAR--NNLPTTARRYEDQM 542
WQ EAASRAA++NG EEGLGDSS+ PI FP ++QME EPAR N+ TTARR EDQM
Sbjct: 493 WQLEAASRAAMDNGMEEGLGDSSEVPPIEFPRELQMEVDREPARVTANVLTTARRREDQM 552
Query: 543 VPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRD------TLNQGVLQT- 595
VP+MT+SL R E E S+ + NS +SRAEVP VN EPR + T V +T
Sbjct: 553 VPTMTSSLNRAETEISA-DFMNSV-DSRAEVP--TRVNFEPRTEREENFRTTAGNVARTN 608
Query: 596 -VHNNNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWS-PATSSYSEQLVGDEN 653
+H +N FQQ + N + +S+ R+GGVVPVWS PA S +SE DE
Sbjct: 609 GIHEHNNFQQPQHR--MRNVLAPSVSEASSGWTGREGGVVPVWSPPAASDHSETFASDEA 666
Query: 654 GIGTSSSYLQRHPQSHQIMNCRRLSQT 680
I +S SYL RHPQSH++MN +LSQ+
Sbjct: 667 DI-SSRSYLDRHPQSHRLMNWSQLSQS 692
>gi|28201254|dbj|BAB70688.2| cryptochrome 1b [Oryza sativa Japonica Group]
Length = 700
Score = 935 bits (2417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/685 (70%), Positives = 555/685 (81%), Gaps = 16/685 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFRRDLRVEDNPALAA RAG V+ ++WAPEE+GPYYPGRVSRWWL SL HLD+
Sbjct: 20 TVVWFRRDLRVEDNPALAAAARAGGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 79
Query: 66 SLRSLGT-SLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
SLR LG LVT+RS D+V +LL++V+ TGAT+LFFNHLYDP+SLVRDHR KE + A+GI
Sbjct: 80 SLRRLGAGKLVTRRSADAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAAEGI 139
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V+SFNADLLYEPW+V D +GQ F FA FW +CLSMP+DP APLLPPKRINSGD+S CP
Sbjct: 140 IVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSGDLSMCP 199
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
SD L+FED+SE+GSNALLARAWSPGW NADKALT F+NGPLI YS NR+KADSA+TS LS
Sbjct: 200 SDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTSLLS 259
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
P+LHFGE+SVRKVFHLVR+KQ+ W+NEGN+A +ES LFL+SIGLREYSRY+SFNHP SH
Sbjct: 260 PYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNHPCSH 319
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
E+PLL HL+FF WV++E YFK WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK
Sbjct: 320 EKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 379
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
VLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++PDGR DRIDNPQ EGYKFDP+GE
Sbjct: 380 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFDPHGE 439
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
YVRRWLPELARLPTEWIHHPW+AP SVLQAAG+ELGSNYP PIV +DAA RL EALSEM
Sbjct: 440 YVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEALSEM 499
Query: 485 WQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPAR--NNLPTTARRYEDQM 542
WQ EAASRAA++NG EEGLGDSS+ PI FP ++QME EPAR N+ TTARR EDQM
Sbjct: 500 WQLEAASRAAMDNGMEEGLGDSSEVPPIEFPRELQMEVDREPARVTANVLTTARRREDQM 559
Query: 543 VPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRD----TLNQGVLQT--V 596
VP+MT+SL R E E S+ + NS +SRAEVP N R+ T V +T +
Sbjct: 560 VPTMTSSLNRAETEISA-DFMNSV-DSRAEVPTRVNFEPATEREENFRTTAGNVARTNGI 617
Query: 597 HNNNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWS-PATSSYSEQLVGDENGI 655
H +N FQQ + N + +S+ R+GGVVPVWS PA S +SE DE I
Sbjct: 618 HEHNNFQQPQHR--MRNVLAPSVSEASSGWTGREGGVVPVWSPPAASDHSETFASDEADI 675
Query: 656 GTSSSYLQRHPQSHQIMNCRRLSQT 680
+S SYL RHPQSH++MN +LSQ+
Sbjct: 676 -SSRSYLDRHPQSHRLMNWSQLSQS 699
>gi|350537989|ref|NP_001234577.1| cryptochrome 1b [Solanum lycopersicum]
gi|15559008|gb|AAL02092.1|AF348461_1 cryptochrome 1b [Solanum lycopersicum]
gi|15559010|gb|AAL02093.1|AF348462_1 Cryptochrome 1b [Solanum lycopersicum]
Length = 583
Score = 933 bits (2411), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/579 (79%), Positives = 513/579 (88%), Gaps = 5/579 (0%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
MS GCSIVWFRRDLR+EDNPALAA VRAG+VIAVFIWAPEEEG Y PGRVSRWW+K SL
Sbjct: 1 MSSGGCSIVWFRRDLRLEDNPALAAAVRAGSVIAVFIWAPEEEGYYCPGRVSRWWIKKSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HLDSSL+ LGTSL+TKRS DSVSSLL+VVK+TGAT++FFNHLYDP+SLVRD+ AKE L+
Sbjct: 61 AHLDSSLKKLGTSLITKRSNDSVSSLLQVVKSTGATRVFFNHLYDPISLVRDNCAKETLS 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
A+G++V SFNADLLYEPW+V D + +PF+TF+ FWEKCL+MP+DP+APLLPPKRI SGD
Sbjct: 121 AEGVSVCSFNADLLYEPWEVVDDESRPFSTFSDFWEKCLTMPYDPEAPLLPPKRIISGDA 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
SRCPSD LVFE E EKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNR KADSATT
Sbjct: 181 SRCPSDNLVFESELEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRSKADSATT 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
SFLSP LHFGEVSVRKVFH +R KQ WANEGNKAG+ESVNLFLKSIGLRE+SRYMSF H
Sbjct: 241 SFLSPCLHFGEVSVRKVFHRIRTKQTLWANEGNKAGEESVNLFLKSIGLREFSRYMSFYH 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
PYSHERPLLG LK+F W+VDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS
Sbjct: 301 PYSHERPLLGQLKYFPWLVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F VKVLQLPW WGMKYFWDTLLDADLESDALGWQ+I+GT+PDG F IDNPQFEGYKFD
Sbjct: 361 FSVKVLQLPWTWGMKYFWDTLLDADLESDALGWQFITGTLPDGCEFLGIDNPQFEGYKFD 420
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
PNGEYVRRWLPELARLPTEWIHHPW+APESVLQAAGIELGSNYPFPIV I AAK RL+EA
Sbjct: 421 PNGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPFPIVEIVAAKERLEEA 480
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDS-APIAFPPDIQME----EIPEPARNNLPTTA 535
LS+MWQ EAA+R+AIENG EEG GDS+D PIAFP +Q+E +P N T
Sbjct: 481 LSQMWQLEAAARSAIENGMEEGHGDSTDEFVPIAFPQAMQIEMEANNVPVRNNNPTITAL 540
Query: 536 RRYEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVP 574
RRY DQ+VPSM++S R E+EE+S+++RNS +SRAEVP
Sbjct: 541 RRYGDQIVPSMSSSFFRNEDEETSVDIRNSVVDSRAEVP 579
>gi|20800469|gb|AAB28725.2| flavin-type blue-light photoreceptor [Arabidopsis thaliana]
Length = 556
Score = 927 bits (2396), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/535 (85%), Positives = 495/535 (92%), Gaps = 6/535 (1%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IVWFRRDLRVEDNPALAA VRAG VIA+F+WAPEEEG Y+PGRVSRWWLK+SL+ LDSSL
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 74
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
RSLGT L+TKRSTDSV+SLL+VVK+TGA+Q+FFNHLYDPLSLVRDHRAK+ LTAQGIAVR
Sbjct: 75 RSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVR 134
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
SFNADLLYEPW+V D G+PF+ FAAFWE+CLSMP+DP++PLLPPK+I SGD+S+C +D
Sbjct: 135 SFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSKCVADP 194
Query: 188 LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHL 247
LVFED+SEKGSNALLARAWSPGWSN DKALTTFINGPL+EYSKNRRKADSATTSFLSPHL
Sbjct: 195 LVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHL 254
Query: 248 HFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERP 307
HFGEVSVRKVFHLVRIKQV+WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHERP
Sbjct: 255 HFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERP 314
Query: 308 LLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 367
LLGHLKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ
Sbjct: 315 LLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 374
Query: 368 LPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVR 427
LPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVR
Sbjct: 375 LPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVR 434
Query: 428 RWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQ 487
RWLPEL+RLPT+WIHHPWNAPESVLQAAGIELGSNYP PIV +D AK RL EALS+MWQ
Sbjct: 435 RWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQL 494
Query: 488 EAASRAAIENGTEEGLGDSS--DSAPIAFPPDIQMEEIPEPARNNLPTTARRYED 540
EAASRAAIENG+EEGLGDS+ + API FP DI MEE EP R N RRYED
Sbjct: 495 EAASRAAIENGSEEGLGDSAEVEEAPIEFPRDITMEET-EPTRLN---PNRRYED 545
>gi|77963980|gb|ABB13331.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare]
gi|77963982|gb|ABB13332.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare]
gi|77963984|gb|ABB13333.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare]
Length = 712
Score = 926 bits (2394), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/689 (69%), Positives = 552/689 (80%), Gaps = 16/689 (2%)
Query: 2 SGRGCSIVWFRRDLRVEDNPALAAGVRA-GAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
+G C +VWFRRDLRVEDNPALAA R G V+ ++W+PEE+GPY+PGRVSRWWL SL
Sbjct: 13 AGMKC-VVWFRRDLRVEDNPALAAAARTAGEVVPAYVWSPEEDGPYFPGRVSRWWLSQSL 71
Query: 61 SHLDSSLRSLGT-SLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
HL++SL LG LVT+RS DSV++LL++V+ TGAT LFFNHLYDP+SLVRDHR KE L
Sbjct: 72 KHLEASLHRLGAGKLVTRRSADSVAALLQLVRDTGATHLFFNHLYDPISLVRDHRLKEML 131
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGD 179
T++GI V+SFNADLLY+PW+VND GQPF F FW +CLSMP+DP APLLPPKRINSGD
Sbjct: 132 TSEGIVVQSFNADLLYDPWEVNDDDGQPFNMFMPFWNRCLSMPYDPPAPLLPPKRINSGD 191
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+S CPSD L+FEDESE+GSNALLARAWSPGW NADKAL+ F+NGPLI+YS NR+KADSA
Sbjct: 192 LSMCPSDDLIFEDESERGSNALLARAWSPGWQNADKALSAFLNGPLIDYSVNRKKADSAN 251
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP+LHFGE+SVRKVFHLVR+KQ+ W+NEGN A +ES LFL+S+GLREYSRY+ FN
Sbjct: 252 TSLLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSVGLREYSRYLCFN 311
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
HP SHE+PLL HL+FF WVVDE FK WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS
Sbjct: 312 HPCSHEKPLLAHLRFFPWVVDESTFKFWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 371
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++PD R D IDNPQ EGYKF
Sbjct: 372 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGYKF 431
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP+GEYVRRWLPELARLPTEWIHHPW+AP SVLQAAG+ELGSNYP PIV +D A+ RL E
Sbjct: 432 DPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTAQVRLQE 491
Query: 480 ALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPAR--NNLPTTARR 537
ALSEMWQ EAASRAA++ G EEGLGDSS+ PI FP D+QME EPAR N+ TTA+R
Sbjct: 492 ALSEMWQLEAASRAAMDTGMEEGLGDSSEVPPIEFPQDLQMEVHWEPARVAPNVLTTAQR 551
Query: 538 YEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTV- 596
+DQMVP+MTTSL RVE E S+ +L NS +SRAEVP + R+ + Q V
Sbjct: 552 RQDQMVPTMTTSLNRVETEISA-DLGNSV-DSRAEVPFRMHFEPRTEREEIIQSTGNAVG 609
Query: 597 ----HNNNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWS-PATSSYSEQLVGD 651
H++N FQQ + N + +S+S RDGGVVPVWS PA S +SE D
Sbjct: 610 TNGIHHHNNFQQPQHR--MRNIFAPSVSEASSSWTGRDGGVVPVWSPPAASGHSETYGAD 667
Query: 652 ENGIGTSSSYLQRHPQSHQIMNCRRLSQT 680
E + +S SYL RHPQSH+IMN +LSQ+
Sbjct: 668 EADV-SSRSYLDRHPQSHRIMNWHQLSQS 695
>gi|125590574|gb|EAZ30924.1| hypothetical protein OsJ_15004 [Oryza sativa Japonica Group]
Length = 697
Score = 926 bits (2393), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/681 (70%), Positives = 552/681 (81%), Gaps = 20/681 (2%)
Query: 13 RDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLG 71
RDLRVEDNPALAA RAG V+ ++WAPEE+GPYYPGRVSRWWL SL HLD+SLR LG
Sbjct: 23 RDLRVEDNPALAAAARAGGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDASLRRLG 82
Query: 72 T-SLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFN 130
LVT+RS D+V +LL++V+ TGAT+LFFNHLYDP+SLVRDHR KE + A+GI V+SFN
Sbjct: 83 AGKLVTRRSADAVVALLQLVRDTGATRLFFNHLYDPISLVRDHRLKEMMAAEGIIVQSFN 142
Query: 131 ADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVF 190
ADLLYEPW+V D +GQ F FA FW +CLSMP+DP APLLPPKRINSGD+S CPSD L+F
Sbjct: 143 ADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSGDLSMCPSDDLIF 202
Query: 191 EDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFG 250
ED+SE+GSNALLARAWSPGW NADKALT F+NGPLI YS NR+KADSA+TS LSP+LHFG
Sbjct: 203 EDDSERGSNALLARAWSPGWQNADKALTAFLNGPLIHYSVNRKKADSASTSLLSPYLHFG 262
Query: 251 EVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLG 310
E+SVRKVFHLVR+KQ+ W+NEGN+A +ES LFL+SIGLREYSRY+SFNHP SHE+PLL
Sbjct: 263 ELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSFNHPCSHEKPLLA 322
Query: 311 HLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPW 370
HL+FF WV++E YFK WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPW
Sbjct: 323 HLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPW 382
Query: 371 RWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWL 430
RWGMKYFWDTLLDADLESDALGWQYISG++PDGR DRIDNPQ EGYKFDP+GEYVRRWL
Sbjct: 383 RWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYKFDPHGEYVRRWL 442
Query: 431 PELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAA 490
PELARLPTEWIHHPW+AP SVLQAAG+ELGSNYP PIV +DAA RL EALSEMWQ EAA
Sbjct: 443 PELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDAANARLQEALSEMWQLEAA 502
Query: 491 SRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPAR--NNLPTTARRYEDQMVPSMTT 548
SRAA++NG EEGLGDSS+ PI FP ++QME EPAR N+ TTARR EDQMVP+MT+
Sbjct: 503 SRAAMDNGMEEGLGDSSEVPPIEFPRELQMEVDREPARVTANVLTTARRREDQMVPTMTS 562
Query: 549 SLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRD------TLNQGVLQT--VHNNN 600
SL R E E S+ + NS +SRAEVP VN EPR + T V +T +H +N
Sbjct: 563 SLNRAETEISA-DFMNSV-DSRAEVP--TRVNFEPRTEREENFRTTAGNVARTNGIHEHN 618
Query: 601 AFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWS-PATSSYSEQLVGDENGIGTSS 659
FQQ + N + +S+ R+GGVVPVWS PA S +SE DE I +S
Sbjct: 619 NFQQPQHR--MRNVLAPSVSEASSGWTGREGGVVPVWSPPAASDHSETFASDEADI-SSR 675
Query: 660 SYLQRHPQSHQIMNCRRLSQT 680
SYL RHPQSH++MN +LSQ+
Sbjct: 676 SYLDRHPQSHRLMNWSQLSQS 696
>gi|343403484|dbj|BAK61556.1| cryptochrome1c, partial [Glycine soja]
gi|343403487|dbj|BAK61558.1| cryptochrome1c, partial [Glycine soja]
gi|343403490|dbj|BAK61560.1| cryptochrome1c, partial [Glycine soja]
gi|343403493|dbj|BAK61562.1| cryptochrome1c, partial [Glycine soja]
gi|343403505|dbj|BAK61570.1| cryptochrome1c, partial [Glycine soja]
Length = 547
Score = 922 bits (2382), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/548 (83%), Positives = 489/548 (89%), Gaps = 1/548 (0%)
Query: 107 LSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPD 166
LSLVRDH+AKE LTAQGI VRSFN+DLLYEPWDVNDA GQPF TF+AFWE+CLSMP+DP
Sbjct: 1 LSLVRDHKAKEVLTAQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQ 60
Query: 167 APLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLI 226
APLLPPKRI GD+SRCPSDTLVFEDESEK SNALLARAWSPGWSNADKAL F+NG LI
Sbjct: 61 APLLPPKRIIPGDVSRCPSDTLVFEDESEKASNALLARAWSPGWSNADKALAAFVNGALI 120
Query: 227 EYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKS 286
EYSKNRRKADSATTSFLSPHLHFGEVSV+KVFHLVRIKQV WANEGNKAG+ESVNLFLKS
Sbjct: 121 EYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKS 180
Query: 287 IGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWA 346
IGLREYSRY+SFNHPYSHERPLLGHLKFF WVV+EGYFKAWRQGRTGYPLVDAGMRELWA
Sbjct: 181 IGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWA 240
Query: 347 TGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAF 406
TGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGT+PDGR F
Sbjct: 241 TGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREF 300
Query: 407 DRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFP 466
DRIDNPQF GYK DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP P
Sbjct: 301 DRIDNPQFVGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLP 360
Query: 467 IVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEP 526
IV IDAA+ RL EAL +MW+QEAASRAA+ENGTEEGLGDSS+SAPIAFP DIQMEE PEP
Sbjct: 361 IVGIDAAEVRLQEALIQMWRQEAASRAAMENGTEEGLGDSSESAPIAFPQDIQMEERPEP 420
Query: 527 ARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRD 586
RNN P RRY+DQMVPS+T+S VRVEEEE+S +LRNSA +SRAEVP N Q R+
Sbjct: 421 VRNNPPHGTRRYQDQMVPSITSSHVRVEEEETSSDLRNSAADSRAEVPINVTTQQNA-RE 479
Query: 587 TLNQGVLQTVHNNNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSE 646
T+NQGVL + N Q + AEDSTAESSS++RRERDGGVVPVWSP S++SE
Sbjct: 480 TVNQGVLLNTNRNTRVQNNPTTWLRNAAEDSTAESSSSTRRERDGGVVPVWSPPASNFSE 539
Query: 647 QLVGDENG 654
Q V DENG
Sbjct: 540 QFVDDENG 547
>gi|343403478|dbj|BAK61552.1| cryptochrome1c, partial [Glycine soja]
gi|343403481|dbj|BAK61554.1| cryptochrome1c, partial [Glycine soja]
gi|343403496|dbj|BAK61564.1| cryptochrome1c, partial [Glycine soja]
gi|343403499|dbj|BAK61566.1| cryptochrome1c, partial [Glycine soja]
gi|343403502|dbj|BAK61568.1| cryptochrome1c, partial [Glycine soja]
gi|343403508|dbj|BAK61572.1| cryptochrome1c, partial [Glycine soja]
gi|343403511|dbj|BAK61574.1| cryptochrome1c, partial [Glycine soja]
gi|343403514|dbj|BAK61576.1| cryptochrome1c, partial [Glycine soja]
Length = 547
Score = 920 bits (2379), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/548 (83%), Positives = 489/548 (89%), Gaps = 1/548 (0%)
Query: 107 LSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPD 166
LSLVRDH+AKE LTAQGI VRSFN+DLLYEPWDVNDA GQPF TF+AFWE+CLSMP+DP
Sbjct: 1 LSLVRDHKAKEVLTAQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQ 60
Query: 167 APLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLI 226
APLLPPKRI GD+SRCPSDTLVFEDESEK SNALLARAWSPGWSNADKAL F+NG LI
Sbjct: 61 APLLPPKRIIPGDVSRCPSDTLVFEDESEKASNALLARAWSPGWSNADKALAAFVNGALI 120
Query: 227 EYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKS 286
EYSKNRRKADSATTSFLSPHLHFGEVSV+KVFHLVRIKQV WANEGNKAG+ESVNLFLKS
Sbjct: 121 EYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKS 180
Query: 287 IGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWA 346
IGLREYSRY+SFNHPYSHERPLLGHLKFF WVV+EGYFKAWRQGRTGYPLVDAGMRELWA
Sbjct: 181 IGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWA 240
Query: 347 TGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAF 406
TGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGT+PDGR F
Sbjct: 241 TGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREF 300
Query: 407 DRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFP 466
DRIDNPQF GYK DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP P
Sbjct: 301 DRIDNPQFVGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLP 360
Query: 467 IVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEP 526
IV IDAA+ RL EAL +MW+QEAASRAA+ENGTEEGLGDSS+SAPIAFP DIQME+ PEP
Sbjct: 361 IVGIDAAEVRLQEALIQMWRQEAASRAAMENGTEEGLGDSSESAPIAFPQDIQMEDRPEP 420
Query: 527 ARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRD 586
RNN P RRY+DQMVPS+T+S VRVEEEE+S +LRNSA +SRAEVP N Q R+
Sbjct: 421 VRNNPPHGTRRYQDQMVPSITSSHVRVEEEETSSDLRNSAADSRAEVPINVTTQQNA-RE 479
Query: 587 TLNQGVLQTVHNNNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSE 646
T+NQGVL + N Q + AEDSTAESSS++RRERDGGVVPVWSP S++SE
Sbjct: 480 TVNQGVLLNTNRNTRVQNNPTTWLRNAAEDSTAESSSSTRRERDGGVVPVWSPPASNFSE 539
Query: 647 QLVGDENG 654
Q V DENG
Sbjct: 540 QFVDDENG 547
>gi|219888079|gb|ACL54414.1| unknown [Zea mays]
gi|414586950|tpg|DAA37521.1| TPA: hypothetical protein ZEAMMB73_248176 [Zea mays]
gi|414586951|tpg|DAA37522.1| TPA: hypothetical protein ZEAMMB73_248176 [Zea mays]
Length = 688
Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/695 (67%), Positives = 550/695 (79%), Gaps = 33/695 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFRRDLRVEDNPALAA RAG V+ ++W+PEEEGPYYPGRVSRWW+ SL+HLD+S
Sbjct: 4 VVWFRRDLRVEDNPALAAAARAGGEVVPAYVWSPEEEGPYYPGRVSRWWISQSLNHLDAS 63
Query: 67 LRSLGT-SLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
LR LG LVT+RS D+ +LL++V+ TGAT ++FNHLYDP+SLVRD R KE L A+GI
Sbjct: 64 LRRLGAGKLVTRRSADAAVALLQLVRDTGATHVYFNHLYDPISLVRDRRLKEMLAAEGIV 123
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
V+SFN+DLLYEPW+V D +GQPF F FW +CLSMP+DP APLLPPKRINSGD+S CPS
Sbjct: 124 VQSFNSDLLYEPWEVVDDEGQPFTMFDPFWNRCLSMPYDPPAPLLPPKRINSGDLSMCPS 183
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
+ L+FEDESE+GSNALLARAW+PGW NADKALT F+NGPL +YS NR+KADSA+TS LSP
Sbjct: 184 EDLIFEDESERGSNALLARAWTPGWQNADKALTAFLNGPLADYSVNRKKADSASTSLLSP 243
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
HLHFGE+SVRKVFHLVR+KQ+ W+NEGN A +ES LFL+SIGLREYSRY+SFNHP SHE
Sbjct: 244 HLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSIGLREYSRYLSFNHPSSHE 303
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
RPLL HL+FF WVVDE YFK WRQGRTGYPLVDAGMRELWATGWLHDRIRVVV+SFFVKV
Sbjct: 304 RPLLAHLRFFPWVVDESYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVASFFVKV 363
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
LQLPWRWGMKYFWDTLLDADLESDALGWQYI+G++PDGR DRIDNPQFEGYKFDP+GEY
Sbjct: 364 LQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDGRELDRIDNPQFEGYKFDPHGEY 423
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMW 485
VRRW+PELARLPTEWIHHPW+AP SVLQAAGIELGSNYP PIV +DAAK RL ALSEMW
Sbjct: 424 VRRWIPELARLPTEWIHHPWDAPVSVLQAAGIELGSNYPLPIVELDAAKGRLQAALSEMW 483
Query: 486 QQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPA--------RNNLPTTARR 537
Q EAASRA + NGTEEGLGDSS+ + FP ++QME +PA ++P ARR
Sbjct: 484 QLEAASRATMNNGTEEGLGDSSE---VLFPQELQMEVDRQPAPAEAAANVHVHVPMPARR 540
Query: 538 YEDQMVPSMTT-SLVRVEEEESS-LELRNSAEE-SRAEVPRNANVNQEPRRDT------L 588
DQMVP+MTT SL R E S+ L + NS EE +RA+VP +A+++ PR +
Sbjct: 541 RGDQMVPTMTTSSLNRAGTEVSADLVVANSEEEDTRAQVPFHAHLHLHPRAEAPPAARRT 600
Query: 589 NQGVLQTVHNNNAFQQF--NAAIVLANAEDSTAESSSTSRRERDGGVVPVWS-PATSSYS 645
N G Q ++ FQQ + L S A SS T R+G VVPVWS PA S +S
Sbjct: 601 NNGARQ----HDVFQQRRNHRRDALLAPSASEASSSWTG---REGAVVPVWSPPAASGHS 653
Query: 646 EQLVGDENGIGTSSSYLQRHPQSHQIMNCRRLSQT 680
+ DE + +S SYL RHPQSH++MN +LSQ+
Sbjct: 654 DAFAADEADV-SSRSYLGRHPQSHRLMNWSQLSQS 687
>gi|357163871|ref|XP_003579874.1| PREDICTED: cryptochrome-1-like [Brachypodium distachyon]
Length = 712
Score = 914 bits (2363), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/684 (68%), Positives = 552/684 (80%), Gaps = 15/684 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRA-GAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S+VWFRRDLRVEDNPALAA R G V+ ++W+PEE+GPY+PGRVSRWWL SL HL++
Sbjct: 17 SVVWFRRDLRVEDNPALAAAARTAGEVVPAYVWSPEEDGPYFPGRVSRWWLSQSLKHLEA 76
Query: 66 SLRSLGT-SLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
SL+ LG LVT+RS D+V +LL++V+ TGAT LFFNHLYDP+SLVRDHR KE LTA+GI
Sbjct: 77 SLQRLGAGKLVTRRSADAVVALLQLVRDTGATHLFFNHLYDPISLVRDHRLKEMLTAEGI 136
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V+SFNADLLY+PW+V D +G PF F FW +CLSMP+DP APLLPPKRINSGD+ CP
Sbjct: 137 IVQSFNADLLYDPWEVVDDEGHPFTMFMPFWNRCLSMPYDPPAPLLPPKRINSGDLLMCP 196
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
SD L+FED+SE+GSNALLARAWSPGW NADKALT F+NGPL++YS NR+KADSA TS LS
Sbjct: 197 SDDLIFEDDSERGSNALLARAWSPGWQNADKALTAFLNGPLVDYSVNRKKADSANTSLLS 256
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
P+LHFGE+SVRKVFHLVR+KQ+ W+NEGN A +ES LFL+SIGLREYSRY+ FNHP SH
Sbjct: 257 PYLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSIGLREYSRYICFNHPCSH 316
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
E+PLL HL+FF WVV+E FK WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK
Sbjct: 317 EKPLLAHLRFFPWVVNECNFKFWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 376
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
VLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++PD R D IDNPQ EGYKFDP+GE
Sbjct: 377 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGYKFDPHGE 436
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
YVRRWLPELARLPTEWIHHPW+AP SVLQAAG+ELGSNYP PI+ +DAAK RL EALSEM
Sbjct: 437 YVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIIELDAAKSRLQEALSEM 496
Query: 485 WQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPAR--NNLPTTARRYEDQM 542
WQ EAASRAA++ G EEGLGDSS+ PI FP D+QME EPAR N+ TTARR +DQM
Sbjct: 497 WQLEAASRAAMDTGMEEGLGDSSEVPPIEFPQDLQMEVHWEPARVTANVLTTARRRQDQM 556
Query: 543 VPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNN--- 599
VP+MT+SL RVE E S+ +L NS +SRAEVP + +V + R+ + + V N
Sbjct: 557 VPTMTSSLNRVETEISA-DLGNSV-DSRAEVPSHMHVEPQTEREEMIRSTGNVVRTNDFR 614
Query: 600 --NAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWS-PATSSYSEQLVGDENGIG 656
N FQQ + + ++ +S+S R+GGVVPVWS PA S +SE V DE +
Sbjct: 615 HHNNFQQPQHR--MRDMFAASVSEASSSWTGREGGVVPVWSPPAASGHSETYVADEADV- 671
Query: 657 TSSSYLQRHPQSHQIMNCRRLSQT 680
+S SYL RHPQSH++MN +LSQ+
Sbjct: 672 SSRSYLDRHPQSHRLMNWSQLSQS 695
>gi|77963974|gb|ABB13328.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare]
gi|77963976|gb|ABB13329.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare]
gi|77963978|gb|ABB13330.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare]
Length = 694
Score = 910 bits (2353), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/686 (68%), Positives = 551/686 (80%), Gaps = 22/686 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRA-GAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFRRDLRVEDNPALAA R G V+ ++WAPEE+GPYYPGRVSRWWL SL HLD+
Sbjct: 18 TVVWFRRDLRVEDNPALAAAARTAGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 77
Query: 66 SLRSLGTS-LVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
SLR LG S LVT+RSTD+V++LLE+V++TGAT LFFNHLYDPLSLVRDHR K+ L A+GI
Sbjct: 78 SLRRLGASRLVTRRSTDTVAALLELVRSTGATHLFFNHLYDPLSLVRDHRVKQVLAAEGI 137
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
+V+SFN+DLLYEPW+V D G PF F +FW KCL M DP AP+LPPKRINSGD++RC
Sbjct: 138 SVQSFNSDLLYEPWEVLDDHGSPFTMFTSFWNKCLCM-VDPPAPMLPPKRINSGDLTRCS 196
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
SD L+FED+SE+GSNALLARAWSPGW NADKA T FINGPLI+YS NR+KADSA TS LS
Sbjct: 197 SDDLIFEDDSERGSNALLARAWSPGWQNADKAFTAFINGPLIDYSVNRKKADSANTSLLS 256
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
P+LHFGE+SVRKVFH VR+KQ++W+NE N+ G+E +LFL+SIGLREYSRY++FNHP SH
Sbjct: 257 PYLHFGELSVRKVFHQVRMKQLTWSNESNRDGEEGCSLFLRSIGLREYSRYLAFNHPCSH 316
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
E+PLL HL+FF WVV+E YFK WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK
Sbjct: 317 EKPLLAHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 376
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
VLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++PDGR DRIDNPQFEGYKFDP GE
Sbjct: 377 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGE 436
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
YVRRWLPELARLPTEWIHHPW+APESVLQAAGIELGSNYP PIV +D AK RL +ALSEM
Sbjct: 437 YVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELDEAKSRLQDALSEM 496
Query: 485 WQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTT---ARRYEDQ 541
W+ EAASRA IENG EEGLGDSSD PIAFP ++Q E+ + A ++ P T ARR DQ
Sbjct: 497 WELEAASRAEIENGMEEGLGDSSDEPPIAFPQELQHMEV-DRATSHTPATAGPARRRADQ 555
Query: 542 MVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNNA 601
MVPS+T+SLVR E E+ L +E SR EVP + +PR ++ Q V ++
Sbjct: 556 MVPSITSSLVRA-ETETELSAVFESEVSRPEVPSQVHFQAQPRMESREQ-----VASDGT 609
Query: 602 FQQFNAAIVLANAED-----STAESSSTSRRERDGGVVPVWS-PATSSYSEQLVGDENGI 655
++N L + ST+E+SS S R+GGVVPVWS PA S +S+ DE I
Sbjct: 610 AARYNQQYTLHRVQGGGIAPSTSEASS-SWTGREGGVVPVWSPPAASGHSDPYAADETDI 668
Query: 656 GTSSSYLQRHPQSH-QIMNCRRLSQT 680
+S SYL R+PQSH ++MN +LSQ+
Sbjct: 669 -SSRSYLDRNPQSHNRLMNWNQLSQS 693
>gi|357149707|ref|XP_003575205.1| PREDICTED: cryptochrome-1-like [Brachypodium distachyon]
Length = 706
Score = 907 bits (2343), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/685 (69%), Positives = 547/685 (79%), Gaps = 16/685 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRA-GAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFRRDLRVEDNPALAA R G V+ ++WAPEE+GPYYPGRVSRWWL SL HLD+
Sbjct: 20 TVVWFRRDLRVEDNPALAAAARTAGEVVPAYVWAPEEDGPYYPGRVSRWWLSQSLKHLDA 79
Query: 66 SLRSLGTS-LVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
SLR LG S LVT+RSTD+V++LL++V++TGAT LFFNHLYDPLSLVRDHR KE L +GI
Sbjct: 80 SLRRLGASRLVTRRSTDTVAALLDLVRSTGATHLFFNHLYDPLSLVRDHRVKELLAGEGI 139
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V+SFN+DLLYEPW+V D PF F FWEKCL M DP APLLPPKRI+SGD+SRCP
Sbjct: 140 TVQSFNSDLLYEPWEVLDDDCCPFTMFTPFWEKCLCMA-DPAAPLLPPKRIHSGDLSRCP 198
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
SD L+FEDESE+GSNALLARAWSPGW NADKA F+NGPL++YS N +KADSA TS LS
Sbjct: 199 SDDLIFEDESERGSNALLARAWSPGWQNADKAFAAFLNGPLMDYSVNSKKADSANTSLLS 258
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
P+LHFGE+SVRKVFH VR+KQ++W+NE N G+E +LFL+SIGLREYSRY++FNHP SH
Sbjct: 259 PYLHFGELSVRKVFHQVRMKQLTWSNESNLDGEEGCSLFLRSIGLREYSRYLTFNHPCSH 318
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
E+PLL HL+FF WVV+E YFK WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK
Sbjct: 319 EKPLLAHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 378
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
VLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++PDGR DRIDNPQFEGYKFDP GE
Sbjct: 379 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGE 438
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
YVRRWLPELARLPTEWIHHPW+APESVLQAAGIELGSNYP PIV +D AK RL EALSEM
Sbjct: 439 YVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELDEAKSRLQEALSEM 498
Query: 485 WQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIP-EPARN--NLPTTA-RRYED 540
W+ EAASRA +ENG EEGLGDSSD IAFP ++Q E+ E R ++PT A RR D
Sbjct: 499 WELEAASRAEMENGMEEGLGDSSDVPLIAFPQELQQMEVDREMVRGTIHIPTPAGRRRAD 558
Query: 541 QMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVN-QEPRRDTLNQGVLQT---V 596
QMVPSMTTSLVR E E S++ S+E SRAEVP + Q R+ +N G T V
Sbjct: 559 QMVPSMTTSLVRA-ETELSVDF-GSSEVSRAEVPSQGHFQPQMEIREVVNGGTAATNNGV 616
Query: 597 HNNNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSS-YSEQLVGDENGI 655
H+ Q N V ST+E+SS S R+GGVVPVWSP +S +S+ DE I
Sbjct: 617 HHQQYNLQNNLNRVRGGVAPSTSEASS-SWTGREGGVVPVWSPPVASGHSDPYAADEADI 675
Query: 656 GTSSSYLQRHPQSHQIMNCRRLSQT 680
+S SYL RHP+SH++MN +LSQT
Sbjct: 676 -SSRSYLDRHPESHRLMNWNQLSQT 699
>gi|161138112|gb|ABX58027.1| cryptochrome 1a [Triticum aestivum]
Length = 700
Score = 897 bits (2318), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/688 (67%), Positives = 541/688 (78%), Gaps = 15/688 (2%)
Query: 4 RGCSIVWFRRDLRVEDNPALAAGVRA-GAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
R ++VWFRRDLRVEDNPALAA R G V+ ++WAP+E+GPYYPGRVSRWWL SL H
Sbjct: 16 RTRTVVWFRRDLRVEDNPALAAAARTAGEVVPAYVWAPKEDGPYYPGRVSRWWLSQSLKH 75
Query: 63 LDSSLRSLG-TSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTA 121
LD+SLR LG T LVT+RSTD+V++LLE+V++TGAT LFFNHLYDPLSLVRDHR K+ L A
Sbjct: 76 LDASLRRLGATRLVTRRSTDTVAALLELVRSTGATHLFFNHLYDPLSLVRDHRVKQVLGA 135
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMS 181
+GI V+SFN+DLLYEPW+V D G PF F FW CL M DP AP+LPPKRINSG++S
Sbjct: 136 EGITVQSFNSDLLYEPWEVLDDHGCPFTMFTPFWNTCLCM-VDPPAPMLPPKRINSGELS 194
Query: 182 RC-PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
RC SD L+FEDESE+GSNALLARAWSPGW NADKA T FINGPLI+YS NR+KADSA T
Sbjct: 195 RCCSSDDLIFEDESERGSNALLARAWSPGWQNADKAFTAFINGPLIDYSVNRKKADSANT 254
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP+LHFGE+SVRKVFH +R+KQ++W+NE N G+E +LFL+SIGLREYSR ++FNH
Sbjct: 255 SLLSPYLHFGELSVRKVFHQIRMKQLTWSNESNGDGEEGCSLFLRSIGLREYSRRLAFNH 314
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P SHE+PLL HL+FF WVV+E YFK WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS
Sbjct: 315 PCSHEKPLLAHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 374
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++PDGR DRIDNPQFEGYKFD
Sbjct: 375 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFD 434
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P GEYVRRWLPELARLPTEWIHHPW+APESVL+AAGIELGSNYP PIV +D AK RL +A
Sbjct: 435 PYGEYVRRWLPELARLPTEWIHHPWDAPESVLRAAGIELGSNYPLPIVELDEAKSRLQDA 494
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYED 540
LSEMW+ EAASRA IENG EEGLGDSSD PIAFP ++Q E+ + T RR D
Sbjct: 495 LSEMWELEAASRAEIENGMEEGLGDSSDEPPIAFPQELQHMEVDRATIHTPATAGRRRAD 554
Query: 541 QMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQ-TVHNN 599
QMVPS+T+SLVR E E+ L +E +R EVP + + R + ++GV T
Sbjct: 555 QMVPSITSSLVRA-ETETELSAAFESEVTRPEVPSQVHFQPQTRMEVRDEGVSDGTAARY 613
Query: 600 NAFQQ-----FNAAIVLANAEDSTAESSSTSRRERDGGVVPVWS-PATSSYSEQLVGDEN 653
N QQ + V ST+E+SS S R+GGVVPVWS PA S +S+ DE
Sbjct: 614 NGVQQQQQYTLHRHRVQGGIAPSTSEASS-SWTGREGGVVPVWSPPAASGHSDPYAADET 672
Query: 654 GIGTSSSYLQRHP-QSHQIMNCRRLSQT 680
I +S SYL RHP QSH++MN +LSQ+
Sbjct: 673 DI-SSRSYLDRHPQQSHRLMNWNQLSQS 699
>gi|52695977|pdb|1U3C|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
Arabidopsis Thaliana
gi|52695978|pdb|1U3D|A Chain A, Crystal Structure Of The Phr Domain Of Cryptochrome 1 From
Arabidopsis Thaliana With Amppnp Bound
Length = 509
Score = 897 bits (2318), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/495 (87%), Positives = 470/495 (94%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IVWFRRDLRVEDNPALAA VRAG VIA+F+WAPEEEG Y+PGRVSRWWLK+SL+ LDSSL
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 74
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
RSLGT L+TKRSTDSV+SLL+VVK+TGA+Q+FFNHLYDPLSLVRDHRAK+ LTAQGIAVR
Sbjct: 75 RSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVR 134
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
SFNADLLYEPW+V D G+PF+ FAAFWE+CLSMP+DP++PLLPPK+I SGD+S+C +D
Sbjct: 135 SFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSKCVADP 194
Query: 188 LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHL 247
LVFED+SEKGSNALLARAWSPGWSN DKALTTFINGPL+EYSKNRRKADSATTSFLSPHL
Sbjct: 195 LVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHL 254
Query: 248 HFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERP 307
HFGEVSVRKVFHLVRIKQV+WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHERP
Sbjct: 255 HFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERP 314
Query: 308 LLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 367
LLGHLKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ
Sbjct: 315 LLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 374
Query: 368 LPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVR 427
LPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVR
Sbjct: 375 LPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVR 434
Query: 428 RWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQ 487
RWLPEL+RLPT+WIHHPWNAPESVLQAAGIELGSNYP PIV +D AK RL EALS+MWQ
Sbjct: 435 RWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQL 494
Query: 488 EAASRAAIENGTEEG 502
EAASRAAIENG+EEG
Sbjct: 495 EAASRAAIENGSEEG 509
>gi|148909202|gb|ABR17701.1| unknown [Picea sitchensis]
Length = 655
Score = 894 bits (2311), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/651 (68%), Positives = 528/651 (81%), Gaps = 17/651 (2%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
CSIVWFRRDLRVEDNPALAAGVRAGAVI ++IW+PEEEG YYPGRVSRWWLK SL+HLDS
Sbjct: 5 CSIVWFRRDLRVEDNPALAAGVRAGAVIVLYIWSPEEEGQYYPGRVSRWWLKQSLAHLDS 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SLR+LG L+TKRST+S+S++L+VV+ATGATQLF+NHLYDPLSLVRDH+ K+ L+++GI
Sbjct: 65 SLRNLGARLITKRSTNSISAILQVVQATGATQLFYNHLYDPLSLVRDHKLKQDLSSRGIL 124
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
VRSFN+DLLYEPW+VND +G F+TF +W KCL+MP+DP APLLPPKRI +G++S CPS
Sbjct: 125 VRSFNSDLLYEPWEVNDEEGHAFSTFQDYWNKCLNMPYDPLAPLLPPKRIVAGEVSNCPS 184
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
D L EDESEK SNALLARAWSPGWS+ADKALT FINGPL++Y+ NR+KADSATTS LSP
Sbjct: 185 DDLNLEDESEKASNALLARAWSPGWSSADKALTAFINGPLLDYAINRQKADSATTSLLSP 244
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
HLHFGE+SV+KVFHL+RI+QV WANEGN +G++SVNLFLKSIGLREYSRY+SFN P SHE
Sbjct: 245 HLHFGELSVKKVFHLLRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPSSHE 304
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
+PLL HL +F W VD YFK+WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV
Sbjct: 305 KPLLSHLNYFPWRVDSDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 364
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
LQLPWRWGMKYFWDTLLDADLE DALGWQYISG +PDGR DRIDNPQFEGYKFDP GEY
Sbjct: 365 LQLPWRWGMKYFWDTLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEY 424
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMW 485
VRRWLPELARLPTEWIHHPW+AP +VLQAAG+ELGSNYP PIV I AK RL E LSEMW
Sbjct: 425 VRRWLPELARLPTEWIHHPWDAPRAVLQAAGVELGSNYPLPIVEISTAKERLQEGLSEMW 484
Query: 486 QQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPS 545
Q+EA +RA++ENGTEEGLG+S ++A + P QM+ EP RNN AR +DQ+VPS
Sbjct: 485 QREADARASLENGTEEGLGESLENANASLPD--QMDVDREPVRNNTDLAARSQDDQLVPS 542
Query: 546 MTTSLVRVEEEESSLELRNSAEESRAEVPRN--------ANVNQEPRRDT--LNQGVLQT 595
++ ++ R + + +S+ +AEVP N A+ Q + T + +G+++
Sbjct: 543 ISNAVQRAYVGYTLSQAASSSPSEQAEVPSNTDSGIASAASSQQFLVQSTWSMTRGLIED 602
Query: 596 VHN-NNAFQQFNAAIVLANAEDSTAESSSTSRRERD---GGVVPVWSPATS 642
+ N N + Q + N STA+SSS R D GG+VPVWS + S
Sbjct: 603 LPNVTNDYPQMQ-VLDEQNESHSTADSSSILRGRDDMSSGGIVPVWSQSLS 652
>gi|161138114|gb|ABX58028.1| cryptochrome 1a [Triticum aestivum]
Length = 698
Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/695 (67%), Positives = 540/695 (77%), Gaps = 19/695 (2%)
Query: 1 MSG----RGCSIVWFRRDLRVEDNPALAAGVRA-GAVIAVFIWAPEEEGPYYPGRVSRWW 55
MSG R ++VWFRRDLRVEDNPALAA R G V+ ++WAPEE+GPYYPGRVSRWW
Sbjct: 7 MSGGAGERTRTVVWFRRDLRVEDNPALAAAARTAGEVVPAYVWAPEEDGPYYPGRVSRWW 66
Query: 56 LKHSLSHLDSSLRSLG-TSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHR 114
L SL HLD+SLR LG T LVT+RSTD+V++LLE+V++TGAT LFFNHLYDPLSLVRDHR
Sbjct: 67 LSQSLKHLDASLRRLGATRLVTRRSTDTVAALLELVRSTGATHLFFNHLYDPLSLVRDHR 126
Query: 115 AKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKR 174
K+ L A+GI V+SFN+DLLYEPW+V D G PF F FW CL M DP AP+LPPKR
Sbjct: 127 VKQVLGAEGITVQSFNSDLLYEPWEVLDDHGCPFTMFTPFWNTCLCM-VDPPAPMLPPKR 185
Query: 175 INSGDMSRC-PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRR 233
INSG++SRC SD L+FEDESE+GSNALLARAWSPGW NADKA T FINGPLI+YS NR+
Sbjct: 186 INSGELSRCCSSDDLIFEDESERGSNALLARAWSPGWQNADKAFTAFINGPLIDYSVNRK 245
Query: 234 KADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYS 293
KADSA TS LSP+LHFGE+SVRKVFH VR+KQ++W+NE N G+E +LFL+SIGLREYS
Sbjct: 246 KADSANTSLLSPYLHFGELSVRKVFHQVRMKQLTWSNESNGDGEEGCSLFLRSIGLREYS 305
Query: 294 RYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDR 353
RY++FNHP SHE+PLL HL+FF WVV+E YFK WRQGRTGYPLVDAGMRELWATGWLHDR
Sbjct: 306 RYLAFNHPCSHEKPLLAHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELWATGWLHDR 365
Query: 354 IRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQ 413
IRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++PDGR DRIDNPQ
Sbjct: 366 IRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQ 425
Query: 414 FEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAA 473
FEGYKFDP GEYVRRWLPELARLPTEWIHHPW+APESVLQAAGIELGSNYP PIV +D A
Sbjct: 426 FEGYKFDPCGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELDEA 485
Query: 474 KCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPT 533
K RL +ALSEMW+ EAASRA IENG EEGLGDSSD PIAFP ++Q E+ +
Sbjct: 486 KSRLQDALSEMWELEAASRAEIENGMEEGLGDSSDEPPIAFPQELQHMEVDRATIHTPAM 545
Query: 534 TARRYEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQ-GV 592
RR DQMVPS+T+S R E E+ L +E +R EVP + + R + ++
Sbjct: 546 AGRRRADQMVPSITSSFFRA-ETETELSAAFESEVTRPEVPSQVHFQPQTRMEVRDEVAS 604
Query: 593 LQTVHNNNAFQQ-----FNAAIVLANAEDSTAESSSTSRRERDGGVVPVWS-PATSSYSE 646
T N QQ + V ST+E+SS S R+GGVVPVWS PA S +S+
Sbjct: 605 DDTAARYNGVQQRQQYTLHRHRVQGGIAPSTSEASS-SWTGREGGVVPVWSPPAASGHSD 663
Query: 647 QLVGDENGIGTSSSYLQRHP-QSHQIMNCRRLSQT 680
DE I +S SYL RHP QSH++MN +LSQ+
Sbjct: 664 PYAADETDI-SSRSYLDRHPQQSHRLMNWNQLSQS 697
>gi|23506659|gb|AAN37909.1| cryptochrome 2 apoprotein [Sorghum bicolor]
Length = 691
Score = 892 bits (2304), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/683 (68%), Positives = 548/683 (80%), Gaps = 19/683 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S+VWFRRDLRVEDNPALAA RAG V+ ++W+PEEEGPYYPGRVSRWW+ SL HLD+
Sbjct: 18 SVVWFRRDLRVEDNPALAAAARAGGEVVPAYVWSPEEEGPYYPGRVSRWWISQSLKHLDA 77
Query: 66 SLRSLGT-SLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
SLR LG LVT+RS D+V +LL++V+ TGAT ++FNHLYDP+SLVRDHR KE L A+GI
Sbjct: 78 SLRRLGAGKLVTRRSADAVVALLQLVRDTGATHVYFNHLYDPISLVRDHRLKEMLAAEGI 137
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V+SFNADLLYEPW+V D + QPF F AFW +CLSM +DP APLLPPK+INSGD+S CP
Sbjct: 138 VVQSFNADLLYEPWEVVDDERQPFTMFTAFWNRCLSMQYDPPAPLLPPKKINSGDLSMCP 197
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
S+ L+FED+SE+GSNALLARAW+PGW NADKALT F+NGPL +YS NR+KADSA+TS LS
Sbjct: 198 SEDLIFEDDSERGSNALLARAWTPGWQNADKALTAFLNGPLADYSVNRKKADSASTSLLS 257
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
PHLHFGE+SVRKVFHLVR+KQ+ W+NEGN A +ES LFL+SIGLREYSRY+SFNHP SH
Sbjct: 258 PHLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSIGLREYSRYLSFNHPSSH 317
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
ERPLL HL+FF WVV+E YFK WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK
Sbjct: 318 ERPLLAHLRFFPWVVNESYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 377
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
VLQLPWRWGMKYFWDTLLDADLESDALGWQYI+G++PD R DRIDNPQFEGYKFDP+GE
Sbjct: 378 VLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDSRELDRIDNPQFEGYKFDPHGE 437
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
YVRRW+PEL RLPTEWIHHPW+AP SVLQAAGIELGSNYP PIV +DAAK RL EALSEM
Sbjct: 438 YVRRWIPELVRLPTEWIHHPWDAPVSVLQAAGIELGSNYPLPIVELDAAKARLQEALSEM 497
Query: 485 WQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVP 544
WQ EAASRA + NG EEGLGDSS+ + FP ++QME + A N+ T RR EDQMVP
Sbjct: 498 WQLEAASRATMNNGMEEGLGDSSE---VPFPEELQME--VDRATANVVMTVRRREDQMVP 552
Query: 545 SMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGV------LQTVHN 598
+MT+SL R E E S+ +L NS E++RA+VP +A+ + R+ + Q + H
Sbjct: 553 TMTSSLNRAETEVSA-DLGNS-EDTRAQVPFHAHFHPRVEREDMIQNTEGPALRINGTHQ 610
Query: 599 NNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWS-PATSSYSEQLVGDENGIGT 657
+N FQQ A A + SSS + RE G VVPVWS PA S +SE DE + +
Sbjct: 611 HNIFQQPQNHRREALAPSVSEASSSWTGRE--GAVVPVWSPPAASGHSETFAADEADV-S 667
Query: 658 SSSYLQRHPQSHQIMNCRRLSQT 680
S SYL RHPQSH++MN +LSQ+
Sbjct: 668 SRSYLDRHPQSHRLMNWSQLSQS 690
>gi|293337104|ref|NP_001170477.1| LOC100384475 [Zea mays]
gi|226452137|gb|ACO59248.1| cryptochrome 1 [Zea mays]
Length = 699
Score = 891 bits (2303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 476/696 (68%), Positives = 552/696 (79%), Gaps = 21/696 (3%)
Query: 1 MSGRG----CSIVWFRRDLRVEDNPALAAGVRA-GAVIAVFIWAPEEEGPYYPGRVSRWW 55
MSG G ++VWFRRDLRVEDNPALAA RA G V+ ++WAPEE+GPYYPGRVSRWW
Sbjct: 8 MSGAGEPGARAVVWFRRDLRVEDNPALAAAPRAAGEVVPAYVWAPEEDGPYYPGRVSRWW 67
Query: 56 LKHSLSHLDSSLRSLGTS-LVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHR 114
L SL HLD+SLR LG LVT+RS+D+V +L+++V++TGAT LFFNHLYDPLSLVRDHR
Sbjct: 68 LSQSLKHLDASLRRLGACRLVTRRSSDAVVALIDLVRSTGATHLFFNHLYDPLSLVRDHR 127
Query: 115 AKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKR 174
KE L A+GI V+SFNADLLYEPW+V D +PF FA FW +CL MP L P KR
Sbjct: 128 VKEQLAAEGIDVQSFNADLLYEPWEVLDEDRRPFTMFAPFWNRCLCMPDPAAPLLPP-KR 186
Query: 175 INSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRK 234
INSGD+SRCP D LVFEDESE+GSNALLARAWSPGW NADKALT F+NGPL++YS NR+K
Sbjct: 187 INSGDLSRCPWDELVFEDESERGSNALLARAWSPGWQNADKALTAFLNGPLMDYSVNRKK 246
Query: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSR 294
ADSA+TS LSP+LHFGE+SVRKVFH VR+KQ+ W+N+GN AG+ES LFL+SIGLREYSR
Sbjct: 247 ADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGNHAGEESCTLFLRSIGLREYSR 306
Query: 295 YMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
Y++FNHP SHE+PLL HL+FF WVV+E YFK WRQGRTGYPLVDAGMRELWATGW+HDRI
Sbjct: 307 YLTFNHPCSHEKPLLSHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELWATGWVHDRI 366
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++PDGR DRIDNPQF
Sbjct: 367 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQF 426
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
EGYKFDP+GEYVRRWLPELARLPTEWIHHPW+APESVLQAAGIELGSNYP PIV +DAAK
Sbjct: 427 EGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVELDAAK 486
Query: 475 CRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQME---EIPEPARNNL 531
RL ALSEMWQ EAASRA + NGTEEGLGDSSD PI FP +++ME + +PA +
Sbjct: 487 GRLQAALSEMWQLEAASRATMNNGTEEGLGDSSDEPPIDFPQELRMEVDRQPVQPAIHAP 546
Query: 532 PTTARRYEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQE--PRRDTLN 589
T RR EDQMVPSMT+S +R E E ++ + +++E+SR EVP N + Q R +T++
Sbjct: 547 GVTGRRREDQMVPSMTSSFIRAETELTA-DFGHTSEDSRPEVPSNIHHLQARPEREETVD 605
Query: 590 QGVLQT--VHNNNAFQ--QFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWS-PATSSY 644
G VH N+ Q Q N VL A + SSS + RDGGVVPVWS PA S +
Sbjct: 606 GGTGNAVRVHGNHHQQNLQNNMHRVLGIAPSISEASSSWT--GRDGGVVPVWSPPAASGH 663
Query: 645 SEQLVGDENGIGTSSSYLQRHPQSHQIMNCRRLSQT 680
S+ DE I +S YL RHPQSH +MN +LSQ+
Sbjct: 664 SDSYAADEADI-SSRGYLDRHPQSHTMMNWSQLSQS 698
>gi|56553448|gb|AAV97867.1| cryptochrome 2 [Sorghum bicolor]
Length = 690
Score = 887 bits (2291), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/683 (68%), Positives = 548/683 (80%), Gaps = 19/683 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S+VWFRRDLRVEDNPALAA RAG V+ ++W+PEEEGPYYPGRVSRWW+ SL LD+
Sbjct: 17 SVVWFRRDLRVEDNPALAAAARAGGEVVPAYVWSPEEEGPYYPGRVSRWWISQSLKRLDA 76
Query: 66 SLRSLGT-SLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
SLR LG LVT+RS D+V +LL++V+ TGAT ++FNHLYDP+SLVRDHR KE L A+GI
Sbjct: 77 SLRRLGAGKLVTRRSADAVVALLQLVRDTGATHVYFNHLYDPISLVRDHRLKEMLAAEGI 136
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V+SFNADLLYEPW+V D +GQPF F AFW +CLSM +DP APLLPPK+INSGD+S CP
Sbjct: 137 VVQSFNADLLYEPWEVVDDEGQPFTMFTAFWNRCLSMQYDPPAPLLPPKKINSGDLSMCP 196
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
S+ L+FED+SE+GSNALLARAW+PGW NADKALT F+NGPL +YS NR+KADSA+TS LS
Sbjct: 197 SEDLIFEDDSERGSNALLARAWTPGWQNADKALTAFLNGPLADYSVNRKKADSASTSLLS 256
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
PHLHFGE+SVRKVFHLVR+KQ+ W+NEGN A +ES LFL+SIGLREYSRY+SFNHP SH
Sbjct: 257 PHLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSIGLREYSRYLSFNHPSSH 316
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
ERPLL HL+FF WVV+E YFK WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK
Sbjct: 317 ERPLLAHLRFFPWVVNESYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 376
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
VLQLPWRWGMKYFWDTLLDADLESDALGWQYI+G++PD R DRIDNPQFEGYKFDP+GE
Sbjct: 377 VLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDSRELDRIDNPQFEGYKFDPHGE 436
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
YVRRW+PEL RLPTEWIHHPW+AP SVLQAAGIELGSNYP PIV +DAAK RL EALSEM
Sbjct: 437 YVRRWIPELVRLPTEWIHHPWDAPVSVLQAAGIELGSNYPLPIVELDAAKARLQEALSEM 496
Query: 485 WQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVP 544
WQ EAASRA + NG EEGLGDSS+ + FP ++QME + A N+ T RR EDQMVP
Sbjct: 497 WQLEAASRATMNNGMEEGLGDSSE---VPFPEELQME--VDRATANVVMTVRRREDQMVP 551
Query: 545 SMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGV------LQTVHN 598
+MT+SL R E E S+ +L NS E++RA+VP +A+ + R+ + Q + H
Sbjct: 552 TMTSSLNRAETEVSA-DLGNS-EDTRAQVPFHAHFHPRVEREDMIQNTEGPALRINGTHQ 609
Query: 599 NNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWS-PATSSYSEQLVGDENGIGT 657
+N FQQ A A + SSS + RE G VVPVWS PA S +SE DE + +
Sbjct: 610 HNIFQQPQNHRREALAPSVSEASSSWTGRE--GAVVPVWSPPAASGHSETFAADEADV-S 666
Query: 658 SSSYLQRHPQSHQIMNCRRLSQT 680
S SYL RHP+S+++MN +LSQ+
Sbjct: 667 SRSYLDRHPRSYRLMNWSQLSQS 689
>gi|16444957|dbj|BAB70686.1| cryptochrome 1a [Oryza sativa Japonica Group]
Length = 710
Score = 886 bits (2290), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/706 (67%), Positives = 547/706 (77%), Gaps = 30/706 (4%)
Query: 1 MSGRGC------SIVWFRRDLRVEDNPALAAGVRA-GAVIAVFIWAPEEEGPYYPGRVSR 53
MSG G ++VWFRRDLRVEDNPALAA RA G V+ V++WAPEE+GPYYPGRVSR
Sbjct: 8 MSGAGAGEAGVRTVVWFRRDLRVEDNPALAAAARAAGEVVPVYVWAPEEDGPYYPGRVSR 67
Query: 54 WWLKHSLSHLDSSLRSLGTS-LVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRD 112
WWL SL HLD+SLR LG S LVT+RS D+V +L+E+V++ GAT LFFNHLYDPLSLVRD
Sbjct: 68 WWLSQSLKHLDASLRRLGASRLVTRRSADAVVALIELVRSIGATHLFFNHLYDPLSLVRD 127
Query: 113 HRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPP 172
HR K LTA+GIAV+SFNADLLYEPW+V D G PF FA FW++CL MP L P
Sbjct: 128 HRVKALLTAEGIAVQSFNADLLYEPWEVVDDDGCPFTMFAPFWDRCLCMPDPAAPLLPP- 186
Query: 173 KRINSGDM--SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSK 230
KRI G++ RCPSD LVFEDESE+GSNALLARAWSPGW NADKAL F+NGPL++YS
Sbjct: 187 KRIAPGELPARRCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGPLMDYSV 246
Query: 231 NRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLR 290
NR+KADSA+TS LSP+LHFGE+SVRKVFH VR+KQ+ W+NEGN AGDES LFL+SIGLR
Sbjct: 247 NRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGDESCVLFLRSIGLR 306
Query: 291 EYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWL 350
EYSRY++FNHP S E+PLL HL+FF WVVDE YFK WRQGRTGYPLVDAGMRELWATGWL
Sbjct: 307 EYSRYLTFNHPCSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMRELWATGWL 366
Query: 351 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRID 410
HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++PDGR DRID
Sbjct: 367 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRID 426
Query: 411 NPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRI 470
NPQ EGYKFDP+GEYVRRWLPELARLPTEWIHHPW+APESVLQAAGIELGSNYP PIV +
Sbjct: 427 NPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVEL 486
Query: 471 DAAKCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNN 530
DAAK RL +ALSEMW+ EAASRAA+ENG EEGLGDSSD PIAFPP++QME PA+
Sbjct: 487 DAAKTRLQDALSEMWELEAASRAAMENGMEEGLGDSSDVPPIAFPPELQMEVDRAPAQPT 546
Query: 531 L--PTTA-RRYEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVN-QEPRRD 586
+ PTTA RR EDQMVPSMT+SLVR E E S+ + NS +SR EVP + R +
Sbjct: 547 VHGPTTAGRRREDQMVPSMTSSLVRAETELSA-DFDNSM-DSRPEVPSQVLFQPRMEREE 604
Query: 587 TLNQGVLQTVHNNN-----------AFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVP 635
T++ G + + F I A + +S++ R+GGVVP
Sbjct: 605 TVDGGGGGGMVGRSNGGGHQGQHQQQQHNFQTTIHRARGVAPSTSEASSNWTGREGGVVP 664
Query: 636 VWS-PATSSYSEQLVGDENGIGTSSSYLQRHPQSHQIMNCRRLSQT 680
VWS PA S S+ DE I TS SYL RHPQSH +MN +LSQ+
Sbjct: 665 VWSPPAASGPSDHYAADEADI-TSRSYLDRHPQSHTLMNWSQLSQS 709
>gi|413937401|gb|AFW71952.1| cryptochrome 1 [Zea mays]
Length = 707
Score = 886 bits (2290), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/696 (67%), Positives = 552/696 (79%), Gaps = 21/696 (3%)
Query: 1 MSGRG----CSIVWFRRDLRVEDNPALAAGVRA-GAVIAVFIWAPEEEGPYYPGRVSRWW 55
MSG G ++VWFRRDLRVEDNPALAA RA G V+ ++WAPEE+G YYPGRVSRWW
Sbjct: 8 MSGAGEPGARAVVWFRRDLRVEDNPALAAAARAAGEVVPAYVWAPEEDGAYYPGRVSRWW 67
Query: 56 LKHSLSHLDSSLRSLGTS-LVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHR 114
L SL HLD+SLR LG + LVT+RS D+V++LL++V+ TGAT LFFNHLYDPLSLVRD+R
Sbjct: 68 LSQSLKHLDASLRRLGAARLVTRRSNDAVAALLDLVRCTGATHLFFNHLYDPLSLVRDYR 127
Query: 115 AKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKR 174
KE L A+GI V+SFNADLLYEPW+V D +PF FA FW +CL MP L P KR
Sbjct: 128 VKEQLAAEGIDVQSFNADLLYEPWEVLDEDRRPFTMFAPFWNRCLCMPDPAAPLLPP-KR 186
Query: 175 INSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRK 234
INSGD+SRCP D LVFEDESE+GSNALLARAWSPGW NADKALT F+NGPL++YS NR+K
Sbjct: 187 INSGDLSRCPWDELVFEDESERGSNALLARAWSPGWQNADKALTAFLNGPLMDYSVNRKK 246
Query: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSR 294
ADSA+TS LSP+LHFGE+SVRKVFH VR+KQ+ W+N+GN AG+ES LFL+SIGLREYSR
Sbjct: 247 ADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGNHAGEESCTLFLRSIGLREYSR 306
Query: 295 YMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
Y++FNHP SHE+PLL HL+FF WVV+E YFK WRQGRTGYPLVDAGMRELWATGW+HDRI
Sbjct: 307 YLTFNHPCSHEKPLLSHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELWATGWVHDRI 366
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++PDGR DRIDNPQF
Sbjct: 367 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQF 426
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
EGYKFDP+GEYVRRWLPELARLPTEWIHHPW+APESVLQAAG+ELGSNYP PIV +DAA
Sbjct: 427 EGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPRPIVELDAAN 486
Query: 475 CRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQME---EIPEPARNNL 531
RL +ALSEMW+ EAASRAA+ENG EEGLGDS+D PI FP +++ME + +PA +
Sbjct: 487 SRLQDALSEMWELEAASRAAMENGMEEGLGDSTDEPPIDFPQELRMEVDRQPVQPAIHAP 546
Query: 532 PTTARRYEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQE--PRRDTLN 589
T RR EDQMVPSMT+S +R E E ++ + +++E+SR EVP N + Q R +T++
Sbjct: 547 GVTGRRREDQMVPSMTSSFIRAETELTA-DFGHTSEDSRPEVPSNIHHLQARPEREETVD 605
Query: 590 QGVLQT--VHNNNAFQ--QFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWS-PATSSY 644
G VH N+ Q Q N VL A + SSS + RDGGVVPVWS PA S +
Sbjct: 606 GGTGNAVRVHGNHHQQNLQNNMHRVLGIAPSISEASSSWT--GRDGGVVPVWSPPAASGH 663
Query: 645 SEQLVGDENGIGTSSSYLQRHPQSHQIMNCRRLSQT 680
S+ DE I +S YL RHPQSH +MN +LSQ+
Sbjct: 664 SDSYAADEADI-SSRGYLDRHPQSHTMMNWSQLSQS 698
>gi|115446841|ref|NP_001047200.1| Os02g0573200 [Oryza sativa Japonica Group]
gi|46806340|dbj|BAD17529.1| cryptochrome 1a [Oryza sativa Japonica Group]
gi|113536731|dbj|BAF09114.1| Os02g0573200 [Oryza sativa Japonica Group]
Length = 718
Score = 885 bits (2288), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/706 (67%), Positives = 547/706 (77%), Gaps = 30/706 (4%)
Query: 1 MSGRGC------SIVWFRRDLRVEDNPALAAGVRA-GAVIAVFIWAPEEEGPYYPGRVSR 53
MSG G ++VWFRRDLRVEDNPALAA RA G V+ V++WAPEE+GPYYPGRVSR
Sbjct: 8 MSGAGAGEAGVRTVVWFRRDLRVEDNPALAAAARAAGEVVPVYVWAPEEDGPYYPGRVSR 67
Query: 54 WWLKHSLSHLDSSLRSLGTS-LVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRD 112
WWL SL HLD+SLR LG S LVT+RS D+V +L+E+V++ GAT LFFNHLYDPLSLVRD
Sbjct: 68 WWLSQSLKHLDASLRRLGASRLVTRRSADAVVALIELVRSIGATHLFFNHLYDPLSLVRD 127
Query: 113 HRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPP 172
HR K LTA+GIAV+SFNADLLYEPW+V D G PF FA FW++CL MP L P
Sbjct: 128 HRVKALLTAEGIAVQSFNADLLYEPWEVVDDDGCPFTMFAPFWDRCLCMPDPAAPLLPP- 186
Query: 173 KRINSGDM--SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSK 230
KRI G++ RCPSD LVFEDESE+GSNALLARAWSPGW NADKAL F+NGPL++YS
Sbjct: 187 KRIAPGELPARRCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGPLMDYSV 246
Query: 231 NRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLR 290
NR+KADSA+TS LSP+LHFGE+SVRKVFH VR+KQ+ W+NEGN AGDES LFL+SIGLR
Sbjct: 247 NRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGDESCVLFLRSIGLR 306
Query: 291 EYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWL 350
EYSRY++FNHP S E+PLL HL+FF WVVDE YFK WRQGRTGYPLVDAGMRELWATGWL
Sbjct: 307 EYSRYLTFNHPCSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMRELWATGWL 366
Query: 351 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRID 410
HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++PDGR DRID
Sbjct: 367 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRID 426
Query: 411 NPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRI 470
NPQ EGYKFDP+GEYVRRWLPELARLPTEWIHHPW+APESVLQAAGIELGSNYP PIV +
Sbjct: 427 NPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYPLPIVEL 486
Query: 471 DAAKCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNN 530
DAAK RL +ALSEMW+ EAASRAA+ENG EEGLGDSSD PIAFPP++QME PA+
Sbjct: 487 DAAKTRLQDALSEMWELEAASRAAMENGMEEGLGDSSDVPPIAFPPELQMEVDRAPAQPT 546
Query: 531 L--PTTA-RRYEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVN-QEPRRD 586
+ PTTA RR EDQMVPSMT+SLVR E E S+ + NS +SR EVP + R +
Sbjct: 547 VHGPTTAGRRREDQMVPSMTSSLVRAETELSA-DFDNSM-DSRPEVPSQVLFQPRMEREE 604
Query: 587 TLNQGVLQTVHNNN-----------AFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVP 635
T++ G + + F I A + +S++ R+GGVVP
Sbjct: 605 TVDGGGGGGMVGRSNGGGHQGQHQQQQHNFQTTIHRARGVAPSTSEASSNWTGREGGVVP 664
Query: 636 VWS-PATSSYSEQLVGDENGIGTSSSYLQRHPQSHQIMNCRRLSQT 680
VWS PA S S+ DE I TS SYL RHPQSH +MN +LSQ+
Sbjct: 665 VWSPPAASGPSDHYAADEADI-TSRSYLDRHPQSHTLMNWSQLSQS 709
>gi|218191029|gb|EEC73456.1| hypothetical protein OsI_07758 [Oryza sativa Indica Group]
gi|222623102|gb|EEE57234.1| hypothetical protein OsJ_07222 [Oryza sativa Japonica Group]
Length = 719
Score = 878 bits (2269), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 479/715 (66%), Positives = 547/715 (76%), Gaps = 39/715 (5%)
Query: 1 MSGRGC------SIVWFRRDLRVEDNPALAAGVRA-GAVIAVFIWAPEEEGPYYPGRVSR 53
MSG G ++VWFRRDLRVEDNPALAA RA G V+ V++WAPEE+GPYYPGRVSR
Sbjct: 8 MSGAGAGEAGVRTVVWFRRDLRVEDNPALAAAARAAGEVVPVYVWAPEEDGPYYPGRVSR 67
Query: 54 WWLKHSLSHLDSSLRSLGTS-LVTKRSTDSVSSLLEVVKATGATQLFFNHLY-------- 104
WWL SL HLD+SLR LG S LVT+RS D+V +L+E+V++ GAT LFFNHLY
Sbjct: 68 WWLSQSLKHLDASLRRLGASRLVTRRSADAVVALIELVRSIGATHLFFNHLYGSIDPEFQ 127
Query: 105 -DPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPF 163
DPLSLVRDHR K LTA+GIAV+SFNADLLYEPW+V D G PF FA FW++CL MP
Sbjct: 128 IDPLSLVRDHRVKALLTAEGIAVQSFNADLLYEPWEVVDDDGCPFTMFAPFWDRCLCMPD 187
Query: 164 DPDAPLLPPKRINSGDM--SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFI 221
L P KRI G++ RCPSD LVFEDESE+GSNALLARAWSPGW NADKAL F+
Sbjct: 188 PAAPLLPP-KRIAPGELPARRCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFL 246
Query: 222 NGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVN 281
NGPL++YS NR+KADSA+TS LSP+LHFGE+SVRKVFH VR+KQ+ W+NEGN AGDES
Sbjct: 247 NGPLMDYSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGDESCV 306
Query: 282 LFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGM 341
LFL+SIGLREYSRY++FNHP S E+PLL HL+FF WVVDE YFK WRQGRTGYPLVDAGM
Sbjct: 307 LFLRSIGLREYSRYLTFNHPCSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGM 366
Query: 342 RELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIP 401
RELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++P
Sbjct: 367 RELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLP 426
Query: 402 DGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGS 461
DGR DRIDNPQ EGYKFDP+GEYVRRWLPELARLPTEWIHHPW+APESVLQAAGIELGS
Sbjct: 427 DGRELDRIDNPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGS 486
Query: 462 NYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQME 521
NYP PIV +DAAK RL +ALSEMW+ EAASRAA+ENG EEGLGDSSD PIAFPP++QME
Sbjct: 487 NYPLPIVELDAAKTRLQDALSEMWELEAASRAAMENGMEEGLGDSSDVPPIAFPPELQME 546
Query: 522 EIPEPARNNL--PTTA-RRYEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNAN 578
PA+ + PTTA RR EDQMVPSMT+SLVR E E S+ + NS +SR EVP
Sbjct: 547 VDRAPAQPTVHGPTTAGRRREDQMVPSMTSSLVRAETELSA-DFDNSM-DSRPEVPSQVL 604
Query: 579 VN-QEPRRDTLNQGVLQTVHNNN-----------AFQQFNAAIVLANAEDSTAESSSTSR 626
+ R +T++ G + + F I A + +S++
Sbjct: 605 FQPRMEREETVDGGGGGGMVGRSNGGGHQGQHQQQQHNFQTTIHRARGVAPSTSEASSNW 664
Query: 627 RERDGGVVPVWS-PATSSYSEQLVGDENGIGTSSSYLQRHPQSHQIMNCRRLSQT 680
R+GGVVPVWS PA S S+ DE I TS SYL RHPQSH +MN +LSQ+
Sbjct: 665 TGREGGVVPVWSPPAASGPSDHYAADEADI-TSRSYLDRHPQSHTLMNWSQLSQS 718
>gi|413922771|gb|AFW62703.1| cryptochrome 2 [Zea mays]
Length = 707
Score = 862 bits (2226), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/696 (66%), Positives = 548/696 (78%), Gaps = 21/696 (3%)
Query: 1 MSGRG----CSIVWFRRDLRVEDNPALAAGVRA-GAVIAVFIWAPEEEGPYYPGRVSRWW 55
MSG G ++VWFRRDLRVEDNPALAA R G V+ ++W+PEE+GPYYPGRVSRWW
Sbjct: 8 MSGGGEPGVRTVVWFRRDLRVEDNPALAAAARTAGEVVPAYVWSPEEDGPYYPGRVSRWW 67
Query: 56 LKHSLSHLDSSLRSLGTS-LVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHR 114
L SL HLD+SLR LG LVT+RS+D+V +L+++V++TGAT LFFN LYDPLSLVRDHR
Sbjct: 68 LSQSLKHLDASLRRLGACRLVTRRSSDAVVALIDLVRSTGATHLFFNRLYDPLSLVRDHR 127
Query: 115 AKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKR 174
KE L+A+GI V+SFNADLLYEPW+V D G PF FA FW +CL MP L P KR
Sbjct: 128 VKEQLSAEGITVQSFNADLLYEPWEVLDDDGFPFTMFAPFWNRCLCMPDPAAPLLPP-KR 186
Query: 175 INSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRK 234
INSGD+SRCP D L+FEDESEKGSNALLARAWSPGW NADKALT F++GPL++YS N +K
Sbjct: 187 INSGDLSRCPWDELIFEDESEKGSNALLARAWSPGWQNADKALTAFLDGPLVDYSANHKK 246
Query: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSR 294
ADSA+TS LSP+LHFGE+SVRKVFH VR+KQ+ W+N+G++AG+ES LFL++IGLREYSR
Sbjct: 247 ADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGDRAGEESCTLFLRAIGLREYSR 306
Query: 295 YMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
Y++FNHP S E+PLL HL+FF WVVDE +FK WRQGRTGYPLVDAGMRELWATGW+HDRI
Sbjct: 307 YLTFNHPCSLEKPLLSHLRFFPWVVDEVHFKVWRQGRTGYPLVDAGMRELWATGWVHDRI 366
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++PDGR DRIDNPQF
Sbjct: 367 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQF 426
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
EGYKFDP+GEYVRRWLPELARLPTEWIHHPW+APESVLQAAG+ELGSNYP PIV +DAA
Sbjct: 427 EGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPRPIVELDAAN 486
Query: 475 CRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQME---EIPEPARNNL 531
RL ALSEMW+ EAAS AAIENG EEGLGDS+D PI FP +++ME + +PA +
Sbjct: 487 SRLQGALSEMWELEAASCAAIENGMEEGLGDSTDEPPIDFPQELRMEVDRQPAQPAIIHT 546
Query: 532 PTTAR-RYEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVN-QEPRRDTLN 589
P A R EDQ VPSMT+SL+R E E ++ + N++E+SR EVP N ++ + R +T++
Sbjct: 547 PVVAGWRREDQRVPSMTSSLIRAETELTA-DFGNTSEDSRPEVPSNIHLQARAEREETVD 605
Query: 590 QGVLQTVHNNNAFQQFNAAI----VLANAEDSTAESSSTSRRERDGGVVPVWS-PATSSY 644
TV N QQ N VL A + SSS + RE GG+VPVWS PA S +
Sbjct: 606 GATGNTVRVNGNQQQQNLQNNMHRVLGIAPSISEASSSWTGRE--GGLVPVWSPPAASVH 663
Query: 645 SEQLVGDENGIGTSSSYLQRHPQSHQIMNCRRLSQT 680
S+ DE I +S SYL RH QS+ +MN +LSQ+
Sbjct: 664 SDPYTADEADI-SSRSYLDRHQQSNTMMNWSQLSQS 698
>gi|343403517|dbj|BAK61578.1| cryptochrome1d [Glycine soja]
gi|343403520|dbj|BAK61580.1| cryptochrome1d [Glycine soja]
gi|343403523|dbj|BAK61582.1| cryptochrome1d [Glycine soja]
gi|343403526|dbj|BAK61584.1| cryptochrome1d [Glycine soja]
gi|343403529|dbj|BAK61586.1| cryptochrome1d [Glycine soja]
gi|343403532|dbj|BAK61588.1| cryptochrome1d [Glycine soja]
gi|343403535|dbj|BAK61590.1| cryptochrome1d [Glycine soja]
Length = 486
Score = 857 bits (2214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/485 (87%), Positives = 447/485 (92%), Gaps = 1/485 (0%)
Query: 109 LVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAP 168
LVRDHRAKE LTAQGI VRSFN+DLLYEPWDVNDA GQPF TF+AFWE+CLSMP+DP AP
Sbjct: 1 LVRDHRAKEVLTAQGITVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQAP 60
Query: 169 LLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEY 228
LLPPKRI GD+SRCPSDTLVFEDE EK SNALLARAWSPGWSNADKALT F+NG LIEY
Sbjct: 61 LLPPKRIIPGDVSRCPSDTLVFEDELEKASNALLARAWSPGWSNADKALTAFVNGALIEY 120
Query: 229 SKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIG 288
SKNRRKADSATTSFLSPHLHFGEVSV+KVFHLVRIKQV WANEGNKAG+ESVNLFLKSIG
Sbjct: 121 SKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIG 180
Query: 289 LREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATG 348
LREYSRY+SFNHPYSHERPLL HLKFF WVV+EGYFKAWRQGRTGYPLVDAGMRELWATG
Sbjct: 181 LREYSRYISFNHPYSHERPLLAHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATG 240
Query: 349 WLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDR 408
WLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGT+PDGR DR
Sbjct: 241 WLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGRELDR 300
Query: 409 IDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
IDNPQFEGYK DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP PIV
Sbjct: 301 IDNPQFEGYKCDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIV 360
Query: 469 RIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPAR 528
IDAA+ RL EAL +MWQQEAASRAA+ENGTEEGLGDS++SAPIAFP DIQMEE PEP R
Sbjct: 361 GIDAAEVRLQEALIQMWQQEAASRAAMENGTEEGLGDSAESAPIAFPQDIQMEERPEPVR 420
Query: 529 NNLPTTARRYEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTL 588
NNLP RRY+DQMVPS+T+S VRVEEEE+S +LRNSA +SRAEVP N Q+ R+T+
Sbjct: 421 NNLPHGTRRYQDQMVPSITSSHVRVEEEETSSDLRNSAADSRAEVPINV-TTQQIARETV 479
Query: 589 NQGVL 593
NQGVL
Sbjct: 480 NQGVL 484
>gi|308080350|ref|NP_001183937.1| cryptochrome 2 [Zea mays]
gi|257802570|gb|ACV66337.1| cryptochrome 2 [Zea mays]
Length = 643
Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/601 (70%), Positives = 494/601 (82%), Gaps = 12/601 (1%)
Query: 1 MSGRG----CSIVWFRRDLRVEDNPALAAGVRA-GAVIAVFIWAPEEEGPYYPGRVSRWW 55
MSG G ++VWFRRDLRVEDNPALAA R G V+ ++W+PEE+GPYYPGRVSRWW
Sbjct: 8 MSGGGEPGVRTVVWFRRDLRVEDNPALAAAARTAGEVVPAYVWSPEEDGPYYPGRVSRWW 67
Query: 56 LKHSLSHLDSSLRSLGTS-LVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHR 114
L SL HLD+SLR LG LVT+RS+D+V +L+++V++TGAT LFFN LYDPLSLVRDHR
Sbjct: 68 LSQSLKHLDASLRRLGACRLVTRRSSDAVVALIDLVRSTGATHLFFNRLYDPLSLVRDHR 127
Query: 115 AKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKR 174
KE L+A+GI V+SFNADLLYEPW+V D G PF FA FW +CL MP L P KR
Sbjct: 128 VKEQLSAEGITVQSFNADLLYEPWEVLDDDGFPFTMFAPFWNRCLCMPDPAAPLLPP-KR 186
Query: 175 INSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRK 234
INSGD+SRCP D L+FEDESEKGSNALLARAWSPGW NADKALT F++GPL++YS N +K
Sbjct: 187 INSGDLSRCPWDELIFEDESEKGSNALLARAWSPGWQNADKALTAFLDGPLVDYSANHKK 246
Query: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSR 294
ADSA+TS LSP+LHFGE+SVRKVFH VR+KQ+ W+N+G++AG+ES LFL++IGLREYSR
Sbjct: 247 ADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGDRAGEESCTLFLRAIGLREYSR 306
Query: 295 YMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
Y++FNHP S E+PLL HL+FF WVVDE +FK WRQGRTGYPLVDAGMRELWATGW+HDRI
Sbjct: 307 YLTFNHPCSLEKPLLSHLRFFPWVVDEVHFKVWRQGRTGYPLVDAGMRELWATGWVHDRI 366
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++PDGR DRIDNPQF
Sbjct: 367 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQF 426
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
EGYKFDP+GEYVRRWLPELARLPTEWIHHPW+APESVLQAAG+ELGSNYP PIV +DAA
Sbjct: 427 EGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPRPIVELDAAN 486
Query: 475 CRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQME---EIPEPARNNL 531
RL ALSEMW+ EAAS AAIENG EEGLGDS+D PI FP +++ME + +PA +
Sbjct: 487 SRLQGALSEMWELEAASCAAIENGMEEGLGDSTDEPPIDFPQELRMEVDRQPAQPAIIHT 546
Query: 532 PTTAR-RYEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQ 590
P A R EDQ VPSMT+SL+R E E ++ + N++E+SR EVP N ++ R+
Sbjct: 547 PVVAGWRREDQRVPSMTSSLIRAETELTA-DFGNTSEDSRPEVPSNIHLQARAEREETVD 605
Query: 591 G 591
G
Sbjct: 606 G 606
>gi|343403436|dbj|BAK61524.1| cryptochrome1a [Glycine soja]
Length = 471
Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/473 (84%), Positives = 423/473 (89%), Gaps = 4/473 (0%)
Query: 179 DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
D SRCPSDTL+FEDE EK SNALLARAWSPGWSNA+KALTTFINGPLIEYSKNRRKADSA
Sbjct: 1 DASRCPSDTLLFEDELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSA 60
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TTS LSPHLHFGE+SV+KVFHLVRIKQV WANEGNKAG+ESVNLFLKSIGLREYSRY+SF
Sbjct: 61 TTSLLSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISF 120
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
NHPYSHERPLLGHLKFF WVV+EGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV
Sbjct: 121 NHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 180
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++PDGR DRIDNPQFEGYK
Sbjct: 181 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRIDNPQFEGYK 240
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP PIV IDAAK RL
Sbjct: 241 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKTRLL 300
Query: 479 EALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRY 538
EALSEMWQQEAASRAA+ENGTEEGLGDSS+S P AFP D+QMEE EP RNN ARRY
Sbjct: 301 EALSEMWQQEAASRAAMENGTEEGLGDSSESVPAAFPQDMQMEETHEPVRNNPLPVARRY 360
Query: 539 EDQMVPSMTTSLVRVEEEESSLELRNSAEE-SRAEVPRNANVNQEPRRDTLNQGVLQTVH 597
EDQMVPS+T+SL+RVEEEE+S +LR+SAEE SRAEVP AN Q TLN+ +LQT
Sbjct: 361 EDQMVPSITSSLLRVEEEETSSDLRHSAEESSRAEVPVTANAQQNVGV-TLNERMLQTT- 418
Query: 598 NNNAFQQFNAAIVLAN-AEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLV 649
N NA Q+N + L N AEDS ESSS +RRERDGGVVPVWSP SSYSEQ V
Sbjct: 419 NRNAQTQYNTTMELRNVAEDSAVESSSGTRRERDGGVVPVWSPPASSYSEQFV 471
>gi|343403430|dbj|BAK61520.1| cryptochrome1a [Glycine soja]
gi|343403433|dbj|BAK61522.1| cryptochrome1a [Glycine soja]
gi|343403439|dbj|BAK61526.1| cryptochrome1a [Glycine soja]
gi|343403442|dbj|BAK61528.1| cryptochrome1a [Glycine soja]
gi|343403445|dbj|BAK61530.1| cryptochrome1a [Glycine soja]
gi|343403448|dbj|BAK61532.1| cryptochrome1a [Glycine soja]
gi|343403454|dbj|BAK61536.1| cryptochrome1a [Glycine soja]
Length = 471
Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/473 (84%), Positives = 423/473 (89%), Gaps = 4/473 (0%)
Query: 179 DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
D SRCPSDTL+FEDE EK SNALLARAWSPGWSNA+KALTTFINGPLIEYSKNRRKADSA
Sbjct: 1 DASRCPSDTLLFEDELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSA 60
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TTS LSPHLHFGE+SV+KVFHLVRIKQV WANEGNKAG+ESVNLFLKSIGLREYSRY+SF
Sbjct: 61 TTSLLSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISF 120
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
NHPYSHERPLLGHLKFF WVV+EGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV
Sbjct: 121 NHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 180
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++PDGR DRIDNPQFEGYK
Sbjct: 181 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRIDNPQFEGYK 240
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP PIV IDAAK RL
Sbjct: 241 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKTRLL 300
Query: 479 EALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRY 538
EALSEMWQQEAASRAA+ENGTEEGLGDSS+S P AFP D+QMEE EP RNN ARRY
Sbjct: 301 EALSEMWQQEAASRAAMENGTEEGLGDSSESVPAAFPQDMQMEETHEPVRNNPLPVARRY 360
Query: 539 EDQMVPSMTTSLVRVEEEESSLELRNSAEE-SRAEVPRNANVNQEPRRDTLNQGVLQTVH 597
+DQMVPS+T+SL+RVEEEE+S +LR+SAEE SRAEVP AN Q TLN+ +LQT
Sbjct: 361 QDQMVPSITSSLLRVEEEETSSDLRHSAEESSRAEVPVTANAQQNVGV-TLNERMLQTT- 418
Query: 598 NNNAFQQFNAAIVLAN-AEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLV 649
N NA Q+N + L N AEDS ESSS +RRERDGGVVPVWSP SSYSEQ V
Sbjct: 419 NRNAQTQYNTTMELRNVAEDSAVESSSGTRRERDGGVVPVWSPPASSYSEQFV 471
>gi|343403451|dbj|BAK61534.1| cryptochrome1a [Glycine soja]
Length = 471
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/473 (84%), Positives = 423/473 (89%), Gaps = 4/473 (0%)
Query: 179 DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
D SRCPSDTL+FEDE EK SNALLARAWSPGWSNA+KALTTFINGPLIEYSKNRRKADSA
Sbjct: 1 DASRCPSDTLLFEDELEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSA 60
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TTS LSPHLHFGE+SV+KVFHLVRIKQV WANEGNKAG+ESVNLFLKSIGLREYSRY+SF
Sbjct: 61 TTSLLSPHLHFGELSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISF 120
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
NHPYSHERPLLGHLKFF WVV+EGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV
Sbjct: 121 NHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 180
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++PDGR DRIDNPQFEGYK
Sbjct: 181 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGREIDRIDNPQFEGYK 240
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP PIV IDAAK RL
Sbjct: 241 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKTRLL 300
Query: 479 EALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRY 538
EALSEMWQQEAASRAA+ENGTEEGLGDSS+S P AFP D+QMEE EP RNN ARRY
Sbjct: 301 EALSEMWQQEAASRAAMENGTEEGLGDSSESVPAAFPQDMQMEETHEPVRNNPLPVARRY 360
Query: 539 EDQMVPSMTTSLVRVEEEESSLELRNSAEE-SRAEVPRNANVNQEPRRDTLNQGVLQTVH 597
+DQMVPS+T+SL+RVEEEE+S +L++SAEE SRAEVP AN Q TLN+ +LQT
Sbjct: 361 QDQMVPSITSSLLRVEEEETSSDLQHSAEESSRAEVPVTANAQQNVGV-TLNERMLQTT- 418
Query: 598 NNNAFQQFNAAIVLAN-AEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLV 649
N NA Q+N + L N AEDS ESSS +RRERDGGVVPVWSP SSYSEQ V
Sbjct: 419 NRNAQTQYNTTMELRNVAEDSAVESSSGTRRERDGGVVPVWSPPASSYSEQFV 471
>gi|32400625|dbj|BAC78798.1| cryptochrome [Oryza sativa Japonica Group]
Length = 568
Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/573 (69%), Positives = 460/573 (80%), Gaps = 18/573 (3%)
Query: 119 LTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSG 178
+ A+GI V+SFNADLLYEPW+V D +GQ F FA FW +CLSMP+DP APLLPPKRINSG
Sbjct: 2 MAAEGIIVQSFNADLLYEPWEVVDDEGQSFTMFAPFWNRCLSMPYDPAAPLLPPKRINSG 61
Query: 179 DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
D+S CPSD L+FED+SE+GSNALLARAWSPGW N DKALT F+NGPLI YS NR+KADSA
Sbjct: 62 DLSMCPSDDLIFEDDSEEGSNALLARAWSPGWQNRDKALTAFLNGPLIHYSVNRKKADSA 121
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
+TS LSP+LHFGE+SVRKVFHLVR+KQ+ W+NEGN+A +ES LFL+SIGLREYSRY+SF
Sbjct: 122 STSLLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNRAAEESCTLFLRSIGLREYSRYLSF 181
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
NHP SHE+PLL HL+FF WV++E YFK WRQGRTGYPLVDAGMRELWATGWLHDRIRVVV
Sbjct: 182 NHPCSHEKPLLAHLRFFPWVINECYFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 241
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++PDGR DRIDNPQ EGYK
Sbjct: 242 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRELDRIDNPQLEGYK 301
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FDP+GEYVRRWLPELARLPTEWIHHPW+AP SVLQAAG+ELGSNYP PIV +D A RL
Sbjct: 302 FDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVGLDRANARLQ 361
Query: 479 EALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPAR--NNLPTTAR 536
EALSEMWQ EAASRAA++NG EEGLGDSS+ PI FP ++QME EPAR N+ TTAR
Sbjct: 362 EALSEMWQLEAASRAAMDNGMEEGLGDSSEVPPIEFPRELQMEVDREPARVTANVLTTAR 421
Query: 537 RYEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRD------TLNQ 590
R EDQMVP+MT+SL R E E S+ + NS +SRAEVP VN EPR + T
Sbjct: 422 RREDQMVPTMTSSLNRAETEISA-DFMNSV-DSRAEVP--TRVNFEPRTEREENFRTTAG 477
Query: 591 GVLQT--VHNNNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWS-PATSSYSEQ 647
V +T +H +N FQQ + N + +S+ R+GGVVPVWS PA S +SE
Sbjct: 478 NVARTNGIHEHNNFQQPQHR--MRNVLAPSVSEASSGWTGREGGVVPVWSPPAASDHSET 535
Query: 648 LVGDENGIGTSSSYLQRHPQSHQIMNCRRLSQT 680
DE I +S SYL RHPQSH++MN +LSQ+
Sbjct: 536 FASDEADI-SSRSYLDRHPQSHRLMNWSQLSQS 567
>gi|326501158|dbj|BAJ98810.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 583
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/570 (69%), Positives = 456/570 (80%), Gaps = 13/570 (2%)
Query: 119 LTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSG 178
LT++GI V+SFNADLLY+PW+VND GQPF F FW +CLSMP+DP APLLPPKRINSG
Sbjct: 2 LTSEGIVVQSFNADLLYDPWEVNDDDGQPFNMFMPFWNRCLSMPYDPPAPLLPPKRINSG 61
Query: 179 DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
D+S CPSD L+FEDESE+GSNALLARAWSPGW NADKAL+ F+NGPLI+YS NR+KADSA
Sbjct: 62 DLSMCPSDDLIFEDESERGSNALLARAWSPGWQNADKALSAFLNGPLIDYSVNRKKADSA 121
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LSP+LHFGE+SVRKVFHLVR+KQ+ W+NEGN A +ES LFL+S+GLREYSRY+ F
Sbjct: 122 NTSLLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSVGLREYSRYLCF 181
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
NHP SHE+PLL HL+FF WVVDE FK WRQGRTGYPLVDAGMRELWATGWLHDRIRVVV
Sbjct: 182 NHPCSHEKPLLAHLRFFPWVVDESTFKFWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 241
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++PD R D IDNPQ EGYK
Sbjct: 242 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGYK 301
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FDP+GEYVRRWLPELARLPTEWIHHPW+AP SVLQAAG+ELGSNYP PIV +D A+ RL
Sbjct: 302 FDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTAQVRLQ 361
Query: 479 EALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPAR--NNLPTTAR 536
EALSEMWQ EAASRAA++ G EEGLGDSS+ PI FP D+QME EPAR N+ TTA+
Sbjct: 362 EALSEMWQLEAASRAAMDTGMEEGLGDSSEVPPIEFPQDLQMEVHWEPARVAPNVLTTAQ 421
Query: 537 RYEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTV 596
R +DQMVP+MTTSL RVE E S+ +L NS +SRAEVP + R+ + Q V
Sbjct: 422 RRQDQMVPTMTTSLNRVETEISA-DLGNSV-DSRAEVPFRMHFEPRTEREEIIQSTGNAV 479
Query: 597 -----HNNNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWS-PATSSYSEQLVG 650
H++N FQQ + N + +S+S RDGGVVPVWS PA S +SE
Sbjct: 480 GTNGIHHHNNFQQPQHR--MRNIFAPSVSEASSSWTGRDGGVVPVWSPPAASGHSETYGA 537
Query: 651 DENGIGTSSSYLQRHPQSHQIMNCRRLSQT 680
DE + +S SYL RHPQSH+IMN +LSQ+
Sbjct: 538 DEADV-SSRSYLDRHPQSHRIMNWHQLSQS 566
>gi|3551219|dbj|BAA32808.1| blue-light photoreceptor [Adiantum capillus-veneris]
gi|3551225|dbj|BAA32811.1| blue-light photoreceptor [Adiantum capillus-veneris]
Length = 679
Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/637 (60%), Positives = 463/637 (72%), Gaps = 22/637 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IVWFRRDLR+EDNPAL A VRAG V+ VFIW+PEEEG + PGRVSRWWLK SL HL+ S
Sbjct: 10 TIVWFRRDLRIEDNPALVAAVRAGPVLPVFIWSPEEEGQFLPGRVSRWWLKQSLVHLNES 69
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L LG LV +R+++ +++LLE+ KATGATQ+F+NHLYDP+SLVRDHR K+ L+ GI V
Sbjct: 70 LTILGAPLVMRRASNVLAALLEIKKATGATQVFYNHLYDPVSLVRDHRVKQGLSQAGIIV 129
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS--GDMSRCP 184
SFNADLLYEPW+VND GQ F TF+ FW KC+ MP +P+A +LPPKRI G C
Sbjct: 130 NSFNADLLYEPWEVNDDNGQAFTTFSGFWAKCMDMPAEPEAQILPPKRILKFPGPSLSCS 189
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
+ L EDE EKGSNALLARAW PGW+NAD+AL +FING L+EY+ NR+K DSATTS LS
Sbjct: 190 IEDLDLEDELEKGSNALLARAWQPGWANADRALESFINGSLMEYAANRQKVDSATTSLLS 249
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
PHLH+GEVSVRK+FH VR+KQV W EG +ESVNLFL+SIG REYSRY+SFN P++H
Sbjct: 250 PHLHYGEVSVRKIFHNVRMKQVLWVKEGRVEAEESVNLFLRSIGFREYSRYLSFNFPFTH 309
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
ER LL +LKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLH++IRV+VSSF VK
Sbjct: 310 ERSLLYNLKFFPWRVDESYFKAWRQGRTGYPLVDAGMRELWATGWLHNQIRVIVSSFCVK 369
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
LQLPWRWGMKYFWDTLLDADLESD LGWQYISG++PDG DRIDNPQ EGYKFDP GE
Sbjct: 370 FLQLPWRWGMKYFWDTLLDADLESDVLGWQYISGSLPDGHELDRIDNPQIEGYKFDPYGE 429
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
YVRRWLPEL+RLPTEWIHHPW+AP SVL+AAGIELGSNYP PIV I AA+ RL++AL+EM
Sbjct: 430 YVRRWLPELSRLPTEWIHHPWDAPPSVLRAAGIELGSNYPRPIVEIAAARERLEQALAEM 489
Query: 485 WQQEAASRAAIENGTEEGLGDSSDSAPI--AFPPDIQMEEIPEPARNNLPTTARRYEDQM 542
W EAA +A + NG EEGLGD+ + + FP ++ ++ P R DQM
Sbjct: 490 WANEAADKATLANGLEEGLGDTVEVQGMRNGFPANMDIDRGP----GEKALLVRSPHDQM 545
Query: 543 VPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNNAF 602
VP++ R++ + + Q R+ G +Q V +
Sbjct: 546 VPNVGVR-------------RSTTGAVQGGAANQGSALQAVLREVPANGHVQAVQAQSQR 592
Query: 603 QQFNAAIVLANAEDSTAESSSTSRRERDGGV-VPVWS 638
+ +D+ + + STS R + +PVWS
Sbjct: 593 MAAPPMAMQNGYDDTHSTAESTSARHWSLAIGLPVWS 629
>gi|167998114|ref|XP_001751763.1| cryptochrome 1a [Physcomitrella patens subsp. patens]
gi|5731739|dbj|BAA83338.1| blue light photoreceptor cryptochrome [Physcomitrella patens]
gi|162696861|gb|EDQ83198.1| cryptochrome 1a [Physcomitrella patens subsp. patens]
Length = 727
Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/686 (55%), Positives = 489/686 (71%), Gaps = 32/686 (4%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
C+IVWFRRDLR+EDNPAL A RAG V+ VF+W+P E+G ++PGRVSRWWLK SL+HL+
Sbjct: 4 CTIVWFRRDLRLEDNPALIAAARAGTVVPVFVWSPAEDGQFHPGRVSRWWLKQSLTHLEL 63
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SL+ LG+ L+ ++S D++S LLE+ +ATGATQ+F+NHLYDP+SLVRDHR K+ L+ +GI
Sbjct: 64 SLKKLGSPLILRKSPDTLSVLLEIAEATGATQVFYNHLYDPVSLVRDHRVKQGLSQRGIV 123
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS--GDMSRC 183
V +FN DLLYEPW+V D +GQ F + AFW+KC+SMPF+P+APLLPP+R+ G + C
Sbjct: 124 VHTFNGDLLYEPWEVYDEEGQAFTVYEAFWKKCMSMPFEPEAPLLPPRRLTGPIGKIVGC 183
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT---T 240
++ L EDE EK SNALLARAW PGW A+K+L +F+ PLI+Y+++R+KAD A+ T
Sbjct: 184 NAEELGLEDEFEKSSNALLARAWCPGWGFANKSLDSFLRSPLIDYARDRQKADGASGTPT 243
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSPHLHFGE+SVRK+FH VR +Q++WA EGN G+ SVN+FL+++G REYSRY+SF+
Sbjct: 244 SLLSPHLHFGELSVRKIFHEVRKRQITWAREGNAGGEASVNMFLRALGFREYSRYLSFHF 303
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P++HER LL +LK F W DEGYFKAWRQGRTGYPLVDAGMRELWATGW H+RIRVVV+S
Sbjct: 304 PFTHERSLLANLKSFPWRADEGYFKAWRQGRTGYPLVDAGMRELWATGWAHNRIRVVVAS 363
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F VK LQLPWRWGMKYFWD LLDADLE D LGWQYISG++PDG DRI+NP+ EGY+FD
Sbjct: 364 FSVKFLQLPWRWGMKYFWDVLLDADLECDVLGWQYISGSLPDGHELDRIENPEVEGYRFD 423
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P+G+YVRRW+PELARLP EW+HHPW+AP S L+AAG+ELG+NYP PIV I AA+ RL +
Sbjct: 424 PDGDYVRRWIPELARLPNEWVHHPWDAPPSALRAAGVELGTNYPRPIVEIGAARERLQAS 483
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPA----RNNLPTTAR 536
L+EMW+++AA +AA+ NG EEGLG++ + A P +M ++P R+ +
Sbjct: 484 LAEMWERDAAMKAALANGLEEGLGETVEVAGTGGPEHERM-DVPRVMVHMQRDADMSCNS 542
Query: 537 RYEDQMVPSMTTSLVRVEEEESSLE-----LRNSAEESRAEVPRNANVNQEPRRDT-LNQ 590
DQ+VP + + + ES + + + E RA VP V RR N
Sbjct: 543 SRRDQLVPEIVPNQFHIRAHESIMNRSAAMVEDGEEAGRAAVPM---VFASVRRGMGGNY 599
Query: 591 GVLQTVHNNNAFQQFNAAIVLANAE------DSTAESSS-TSRRERDGGVVPVWSPATSS 643
G N Q +A I DSTAES+S T R +GG VPVWS + S+
Sbjct: 600 GGHHVEGNGGEVAQASAPIQWPTVTAVDYELDSTAESASVTGRGGSEGGTVPVWSQSVSA 659
Query: 644 YS-----EQLVGD-ENGIGTSSSYLQ 663
+ E LV + G G S LQ
Sbjct: 660 RTPIQVREGLVPEVRRGPGLSRRQLQ 685
>gi|16416405|dbj|BAB70665.1| blue-light receptor cryptochrome [Physcomitrella patens]
Length = 727
Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/686 (55%), Positives = 488/686 (71%), Gaps = 32/686 (4%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
C+IVWFRRDLR+EDNPAL A RAG V+ VF+W+P E+G ++PGRVSRWWLK SL+HL+
Sbjct: 4 CTIVWFRRDLRLEDNPALIAAARAGTVVPVFVWSPAEDGQFHPGRVSRWWLKQSLTHLEL 63
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SL+ LG+ L+ ++S D +S LLE+ +ATGATQ+F+NHLYDP+SLVRDHR K+ L+ +GI
Sbjct: 64 SLKKLGSPLILRKSPDMLSVLLEIAEATGATQVFYNHLYDPVSLVRDHRVKQGLSQRGIV 123
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS--GDMSRC 183
V +FN DLLYEPW+V D +GQ F + AFW+KC+SMPF+P+APLLPP+R+ G + C
Sbjct: 124 VHTFNGDLLYEPWEVYDEEGQAFTVYEAFWKKCMSMPFEPEAPLLPPRRLTGPIGKIVGC 183
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT---T 240
++ L EDE EK SNALLARAW PGW A+K+L +F+ PLI+Y+++R+KAD A+ T
Sbjct: 184 NAEELGLEDEFEKSSNALLARAWCPGWGFANKSLDSFLRSPLIDYARDRQKADGASGTPT 243
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSPHLHFGE+SVRK+FH VR +Q++WA EGN G+ SVN+FL+++G REYSRY+SF+
Sbjct: 244 SLLSPHLHFGELSVRKIFHEVRKRQITWAREGNAGGEASVNMFLRALGFREYSRYLSFHF 303
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P++HER LL +LK F W DEGYFKAWRQGRTGYPLVDAGMRELWATGW H+RIRVVV+S
Sbjct: 304 PFTHERSLLANLKSFPWRADEGYFKAWRQGRTGYPLVDAGMRELWATGWAHNRIRVVVAS 363
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F VK LQLPWRWGMKYFWD LLDADLE D LGWQYISG++PDG DRI+NP+ EGY+FD
Sbjct: 364 FSVKFLQLPWRWGMKYFWDVLLDADLECDVLGWQYISGSLPDGHELDRIENPEVEGYRFD 423
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P+G+YVRRW+PELARLP EW+HHPW+AP S L+AAG+ELG+NYP PIV I AA+ RL +
Sbjct: 424 PDGDYVRRWIPELARLPNEWVHHPWDAPPSALRAAGVELGTNYPRPIVEIGAARERLQAS 483
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPA----RNNLPTTAR 536
L+EMW+++AA +AA+ NG EEGLG++ + A P +M ++P R+ +
Sbjct: 484 LAEMWERDAAMKAALANGLEEGLGETVEVAGTGGPEHERM-DVPRVMVHMQRDADMSCNS 542
Query: 537 RYEDQMVPSMTTSLVRVEEEESSLE-----LRNSAEESRAEVPRNANVNQEPRRDT-LNQ 590
DQ+VP + + + ES + + + E RA VP V RR N
Sbjct: 543 SRRDQLVPEIVPNQFHIRAHESIMNRSAAMVEDGEEAGRAAVPM---VFASVRRGMGGNY 599
Query: 591 GVLQTVHNNNAFQQFNAAIVLANAE------DSTAESSS-TSRRERDGGVVPVWSPATSS 643
G N Q +A I DSTAES+S T R +GG VPVWS + S+
Sbjct: 600 GGHHVEGNGGEVAQASAPIQWPTVTAVDYELDSTAESASVTGRGGSEGGTVPVWSQSVSA 659
Query: 644 YS-----EQLVGD-ENGIGTSSSYLQ 663
+ E LV + G G S LQ
Sbjct: 660 RTPIQVREGLVPEVRRGPGLSRRQLQ 685
>gi|3551217|dbj|BAA32807.1| blue-light photoreceptor [Adiantum capillus-veneris]
gi|3551223|dbj|BAA32810.1| blue-light photoreceptor [Adiantum capillus-veneris]
Length = 637
Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/544 (66%), Positives = 428/544 (78%), Gaps = 8/544 (1%)
Query: 5 GCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
C+IVWFRRDLRVEDNPAL A VRAG V+ +FIW PEEEG + PGRVSRWWLK SL L
Sbjct: 2 ACTIVWFRRDLRVEDNPALVAAVRAGTVVPLFIWTPEEEGQFLPGRVSRWWLKQSLIQLH 61
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
SL SLG+ L+ +R+ ++S L +++K TGATQ+FFNHLYDP+SLVRDH+ K+ L G+
Sbjct: 62 QSLTSLGSPLIMRRAQSAISVLSQIIKQTGATQVFFNHLYDPVSLVRDHKVKQELLQAGV 121
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS--GDMSR 182
V +FNADLLYEPW++ND QG+PF TFA FW C+ M +P+APLLPPKRI G +
Sbjct: 122 TVTTFNADLLYEPWEINDEQGRPFTTFAGFWSLCMDMAIEPEAPLLPPKRITKWPGIAAT 181
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
P + L E+ESEKGSN LLARAW+PGW+NAD+AL F++GPL+EY+ NR+K DSATTS
Sbjct: 182 SPIEDLELENESEKGSNDLLARAWAPGWANADRALEAFVSGPLMEYASNRQKVDSATTSL 241
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHLH+GE+SVRKVFH VR+KQV W EGN +ESVNLFL+SIGLREYSRY+ FN P+
Sbjct: 242 LSPHLHYGELSVRKVFHSVRMKQVLWVKEGNADAEESVNLFLRSIGLREYSRYLCFNFPF 301
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+HER LL +LKFF W DEGYFK WRQGRTGYPLVDAGMRELWATGWLH+RIRV+VSSFF
Sbjct: 302 THERSLLSNLKFFPWRNDEGYFKVWRQGRTGYPLVDAGMRELWATGWLHNRIRVIVSSFF 361
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK LQLPWRWGMKYFWDTLLDADLESD LGWQYISG++PDG RIDNPQ EGY++DP
Sbjct: 362 VKFLQLPWRWGMKYFWDTLLDADLESDVLGWQYISGSLPDGHELYRIDNPQLEGYRYDPC 421
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
GEYVRRWLPEL+RLP+EWIHHPW+AP +VL+AAGIELGSNYP PIV + AA+ RL++AL+
Sbjct: 422 GEYVRRWLPELSRLPSEWIHHPWDAPPNVLRAAGIELGSNYPRPIVEVAAARERLEQALA 481
Query: 483 EMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQM 542
EM ++EAA+ A G+ +G+G A DI P RN + R DQM
Sbjct: 482 EMMEKEAAATRAAFEGSLQGVGLEPSQADNM---DIDRGPSDAPGRN---LSDRSPHDQM 535
Query: 543 VPSM 546
VPSM
Sbjct: 536 VPSM 539
>gi|413937403|gb|AFW71954.1| hypothetical protein ZEAMMB73_074626 [Zea mays]
Length = 600
Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/586 (68%), Positives = 464/586 (79%), Gaps = 15/586 (2%)
Query: 105 DPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFD 164
DPLSLVRD+R KE L A+GI V+SFNADLLYEPW+V D +PF FA FW +CL MP
Sbjct: 19 DPLSLVRDYRVKEQLAAEGIDVQSFNADLLYEPWEVLDEDRRPFTMFAPFWNRCLCMPDP 78
Query: 165 PDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGP 224
L P KRINSGD+SRCP D LVFEDESE+GSNALLARAWSPGW NADKALT F+NGP
Sbjct: 79 AAPLLPP-KRINSGDLSRCPWDELVFEDESERGSNALLARAWSPGWQNADKALTAFLNGP 137
Query: 225 LIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFL 284
L++YS NR+KADSA+TS LSP+LHFGE+SVRKVFH VR+KQ+ W+N+GN AG+ES LFL
Sbjct: 138 LMDYSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGNHAGEESCTLFL 197
Query: 285 KSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMREL 344
+SIGLREYSRY++FNHP SHE+PLL HL+FF WVV+E YFK WRQGRTGYPLVDAGMREL
Sbjct: 198 RSIGLREYSRYLTFNHPCSHEKPLLSHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMREL 257
Query: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 404
WATGW+HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++PDGR
Sbjct: 258 WATGWVHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGR 317
Query: 405 AFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
DRIDNPQFEGYKFDP+GEYVRRWLPELARLPTEWIHHPW+APESVLQAAG+ELGSNYP
Sbjct: 318 ELDRIDNPQFEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYP 377
Query: 465 FPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQME--- 521
PIV +DAA RL +ALSEMW+ EAASRAA+ENG EEGLGDS+D PI FP +++ME
Sbjct: 378 RPIVELDAANSRLQDALSEMWELEAASRAAMENGMEEGLGDSTDEPPIDFPQELRMEVDR 437
Query: 522 EIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQ 581
+ +PA + T RR EDQMVPSMT+S +R E E ++ + +++E+SR EVP N + Q
Sbjct: 438 QPVQPAIHAPGVTGRRREDQMVPSMTSSFIRAETELTA-DFGHTSEDSRPEVPSNIHHLQ 496
Query: 582 E--PRRDTLNQGVLQT--VHNNNAFQ--QFNAAIVLANAEDSTAESSSTSRRERDGGVVP 635
R +T++ G VH N+ Q Q N VL A + SSS + RDGGVVP
Sbjct: 497 ARPEREETVDGGTGNAVRVHGNHHQQNLQNNMHRVLGIAPSISEASSSWT--GRDGGVVP 554
Query: 636 VWS-PATSSYSEQLVGDENGIGTSSSYLQRHPQSHQIMNCRRLSQT 680
VWS PA S +S+ DE I +S YL RHPQSH +MN +LSQ+
Sbjct: 555 VWSPPAASGHSDSYAADEADI-SSRGYLDRHPQSHTMMNWSQLSQS 599
>gi|413937402|gb|AFW71953.1| hypothetical protein ZEAMMB73_074626 [Zea mays]
Length = 608
Score = 756 bits (1952), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/586 (68%), Positives = 464/586 (79%), Gaps = 15/586 (2%)
Query: 105 DPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFD 164
DPLSLVRD+R KE L A+GI V+SFNADLLYEPW+V D +PF FA FW +CL MP
Sbjct: 19 DPLSLVRDYRVKEQLAAEGIDVQSFNADLLYEPWEVLDEDRRPFTMFAPFWNRCLCMPDP 78
Query: 165 PDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGP 224
L P KRINSGD+SRCP D LVFEDESE+GSNALLARAWSPGW NADKALT F+NGP
Sbjct: 79 AAPLLPP-KRINSGDLSRCPWDELVFEDESERGSNALLARAWSPGWQNADKALTAFLNGP 137
Query: 225 LIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFL 284
L++YS NR+KADSA+TS LSP+LHFGE+SVRKVFH VR+KQ+ W+N+GN AG+ES LFL
Sbjct: 138 LMDYSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGNHAGEESCTLFL 197
Query: 285 KSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMREL 344
+SIGLREYSRY++FNHP SHE+PLL HL+FF WVV+E YFK WRQGRTGYPLVDAGMREL
Sbjct: 198 RSIGLREYSRYLTFNHPCSHEKPLLSHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMREL 257
Query: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 404
WATGW+HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++PDGR
Sbjct: 258 WATGWVHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGR 317
Query: 405 AFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
DRIDNPQFEGYKFDP+GEYVRRWLPELARLPTEWIHHPW+APESVLQAAG+ELGSNYP
Sbjct: 318 ELDRIDNPQFEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYP 377
Query: 465 FPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQME--- 521
PIV +DAA RL +ALSEMW+ EAASRAA+ENG EEGLGDS+D PI FP +++ME
Sbjct: 378 RPIVELDAANSRLQDALSEMWELEAASRAAMENGMEEGLGDSTDEPPIDFPQELRMEVDR 437
Query: 522 EIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQ 581
+ +PA + T RR EDQMVPSMT+S +R E E ++ + +++E+SR EVP N + Q
Sbjct: 438 QPVQPAIHAPGVTGRRREDQMVPSMTSSFIRAETELTA-DFGHTSEDSRPEVPSNIHHLQ 496
Query: 582 E--PRRDTLNQGVLQT--VHNNNAFQ--QFNAAIVLANAEDSTAESSSTSRRERDGGVVP 635
R +T++ G VH N+ Q Q N VL A + SSS + RDGGVVP
Sbjct: 497 ARPEREETVDGGTGNAVRVHGNHHQQNLQNNMHRVLGIAPSISEASSSWT--GRDGGVVP 554
Query: 636 VWS-PATSSYSEQLVGDENGIGTSSSYLQRHPQSHQIMNCRRLSQT 680
VWS PA S +S+ DE I +S YL RHPQSH +MN +LSQ+
Sbjct: 555 VWSPPAASGHSDSYAADEADI-SSRGYLDRHPQSHTMMNWSQLSQS 599
>gi|83764373|dbj|BAE54523.1| cryptochrome [Marchantia paleacea subsp. diptera]
gi|83764375|dbj|BAE54524.1| cryptochrome [Marchantia paleacea subsp. diptera]
Length = 696
Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/657 (56%), Positives = 480/657 (73%), Gaps = 33/657 (5%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IVWFRRDLRVEDNPAL A RAG VI VFIW+PEE+G ++PGRVSRWWLK SL HLDSS
Sbjct: 5 TIVWFRRDLRVEDNPALVAAARAGIVIPVFIWSPEEDGQFHPGRVSRWWLKQSLIHLDSS 64
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L+SLG+ L+ ++S D+++ LL++V+ GATQ+F+NHLYDP+SLVRDHR K+ L+ I V
Sbjct: 65 LKSLGSPLIMRKSPDTLTVLLDIVQQVGATQVFYNHLYDPVSLVRDHRVKQGLSIHNIPV 124
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS---GDMSRC 183
+FN DLLYEPW+V D +GQ F TF FW+KC++MPF+P+APLL P+R+ G +S
Sbjct: 125 HTFNGDLLYEPWEVYDDEGQAFTTFDDFWDKCMNMPFEPEAPLLSPRRLVGLPPGRISVG 184
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
D L E+E E+ SNALL RAW+PGWS+A+KAL F+ GPL +Y+ +R KAD+A TS L
Sbjct: 185 RIDDLGLENEYERSSNALLGRAWAPGWSSANKALEVFMKGPLHDYATHRIKADNANTSQL 244
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SPHLHFGEVSVRK+FH R KQ+ WA E + G++SV +FL++IG REYSRY+SFN P++
Sbjct: 245 SPHLHFGEVSVRKIFHEARTKQILWARENSYVGEQSVGMFLRAIGFREYSRYLSFNFPFT 304
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
HER LL +LK F W +DE FK+WRQGRTGYPLVDAGMRELWATGWLH+RIRVVVSSF V
Sbjct: 305 HERSLLANLKSFPWRIDENSFKSWRQGRTGYPLVDAGMRELWATGWLHNRIRVVVSSFCV 364
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K LQLPWRWGMKYFWDTLLDADLE D LGWQYISG++PDG DR++NPQ EGYKFDP G
Sbjct: 365 KFLQLPWRWGMKYFWDTLLDADLECDVLGWQYISGSLPDGHELDRMENPQIEGYKFDPEG 424
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSE 483
EYVRRWLPEL+RLPTEWIHHPW+AP +VL+AAG+ELGSNYP PIV I +A+ +L ++L+E
Sbjct: 425 EYVRRWLPELSRLPTEWIHHPWDAPANVLRAAGVELGSNYPLPIVDISSARDQLQQSLAE 484
Query: 484 MWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLP--TTARRYEDQ 541
MW++EAAS+AA+ NG+EEGLG++ ++ P + P ++M+ R++ +TA DQ
Sbjct: 485 MWEREAASKAALANGSEEGLGETVET-PGSCGPGVKMDVHRVVIRSSRAACSTASSRRDQ 543
Query: 542 MVPSMTTSLVR-------------VEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTL 588
+VP M T + V+EE+ ++ ++ + R ++V E
Sbjct: 544 LVPCMPTEDHKLAAASIMNWNQSPVDEEDEPVQPAFVPSQTGGLLDRPSDVRAE------ 597
Query: 589 NQGVLQTVHNNNAFQQFNAAIVLANAEDSTAESSST--SRRERDGGVVPVWSPATSS 643
+ + + A+ + N +STAESS+ R E G VPVW ++SS
Sbjct: 598 ------VIAHPPSDSSMAEAVHVDNELNSTAESSAAVGRRSEESRGEVPVWPQSSSS 648
>gi|6594296|dbj|BAA88423.1| blue light photoreceptor [Adiantum capillus-veneris]
gi|6594300|dbj|BAA88425.1| blue light photoreceptor [Adiantum capillus-veneris]
Length = 699
Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/650 (57%), Positives = 466/650 (71%), Gaps = 21/650 (3%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
+ C+IVW RRDLR+EDNPAL A R G V+ VFIW+PEEE ++PGRVSRWWLK SL
Sbjct: 2 AKPCTIVWLRRDLRLEDNPALCAAGRIGNVVPVFIWSPEEERQFHPGRVSRWWLKQSLIQ 61
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
LD SLRS G LV ++STD++ +L E++KATGATQ+F+NHLYDP+SLVRDH K+ LT
Sbjct: 62 LDVSLRSFGVPLVMRKSTDTLGTLQELIKATGATQVFYNHLYDPISLVRDHHVKQGLTQS 121
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS--GDM 180
GI V+SFN DLLYEPW+V + G+PF +F ++W+KCL+MPF+PD+PLLPP+R+ S G +
Sbjct: 122 GIQVQSFNGDLLYEPWEVLNDDGKPFTSFESYWQKCLNMPFEPDSPLLPPRRLTSIAGSI 181
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
+ L EDE+EK SNALLARAW+PGWSNAD+AL F+ GPL+EYS+NR K D TT
Sbjct: 182 PTYTPEELGLEDETEKSSNALLARAWAPGWSNADRALEAFLAGPLLEYSRNRHKIDGPTT 241
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSPH+HFGEVSVRKV+H VR Q+ WA +G+K G+ES+ F++SIG REYSRY+SFN
Sbjct: 242 SLLSPHMHFGEVSVRKVYHSVRRLQLLWAKDGSKLGEESIYFFMRSIGFREYSRYLSFNF 301
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P++HER LL +LK F W VDEG+FKAWRQGRTGYPLVDAGMRELWATGWLH+R+RV+VSS
Sbjct: 302 PFTHERSLLSNLKSFPWRVDEGFFKAWRQGRTGYPLVDAGMRELWATGWLHNRVRVIVSS 361
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F VK LQLPWRWGMKYFWDTLLDADLESD LGWQYISG++PDG DR+DNPQ EGYK D
Sbjct: 362 FCVKFLQLPWRWGMKYFWDTLLDADLESDVLGWQYISGSLPDGHELDRMDNPQTEGYKHD 421
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P GEYVRRWLPEL RLPTEWIHHPW+AP +VL+AAG+ELGSNYP PIV + AA+ RL +A
Sbjct: 422 PVGEYVRRWLPELVRLPTEWIHHPWDAPPAVLRAAGVELGSNYPRPIVEVAAARERLRQA 481
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYED 540
+++MW+QEAA +AA E L D + + PP + + L ++ R D
Sbjct: 482 VAQMWEQEAALKAAGVATDAEAL-DENLEVKVVTPPLVSTHSLKTAVAGTLSRSSLR--D 538
Query: 541 QMVPSMTTSLVR----VEEEESSLELRNSAEESR---AEVPRNANVNQEPRRDTLNQGVL 593
Q VP+ L E ++S ++ S ++ P A+ E + D +
Sbjct: 539 QRVPTCGKQLSMENGVPHEGDNSPDIAMSPQQDNLLATTAPPEAHSTAE-KCDNKSMNCD 597
Query: 594 QTVHNNNAFQQFNAAIVLANAEDSTAESSSTSRRERD---GGVVPVWSPA 640
QT + N + +STAESSS+ ++ D GV VW P+
Sbjct: 598 QTPE-----PKHNVPPPAVSDGNSTAESSSSPKQVNDELRNGVPLVWVPS 642
>gi|3551221|dbj|BAA32809.1| blue-light photoreceptor [Adiantum capillus-veneris]
gi|3551227|dbj|BAA32812.1| blue-light photoreceptor [Adiantum capillus-veneris]
Length = 718
Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/561 (63%), Positives = 433/561 (77%), Gaps = 15/561 (2%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
+ C++VWFRRDLR+EDNPALAA RAGAV+ VFIW+P+EEG + PGRVSRWWLK SL
Sbjct: 2 AKSCTVVWFRRDLRLEDNPALAAAARAGAVVPVFIWSPDEEGQFRPGRVSRWWLKQSLIQ 61
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
LD SLRSLG SLV + D+VS+LLE+VK TGA+Q+ +NHLYDP+SLVRDHR K++L
Sbjct: 62 LDISLRSLGVSLVMINANDTVSALLELVKTTGASQVVYNHLYDPVSLVRDHRVKQSLVQN 121
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS---GD 179
GI V+SFN DLLYEPW+V D G+PF F ++W KCL+MPF+P++PLLPP+R+ + G
Sbjct: 122 GIQVQSFNGDLLYEPWEVLDDHGKPFTYFESYWAKCLTMPFEPESPLLPPRRLTAAPAGI 181
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+ D L EDE++K SNALLARAW+PGWSNADKAL F+ GP + YS+NR + D T
Sbjct: 182 VHSLTPDELGLEDEADKSSNALLARAWAPGWSNADKALEAFLAGPFLNYSRNRHEIDGPT 241
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSPHLHFGEVSVRKVFH VR QV WA +G+ G+ES+N F++SIG REYSRY+ FN
Sbjct: 242 TSLLSPHLHFGEVSVRKVFHSVRRLQVLWAKDGSMLGEESINYFMRSIGFREYSRYLCFN 301
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P++HER LL +LK F W VDEG FKAWRQGRTGYPLVDAGMRELWATGWLH+R+RV+VS
Sbjct: 302 FPFTHERSLLSNLKSFPWRVDEGLFKAWRQGRTGYPLVDAGMRELWATGWLHNRVRVIVS 361
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK LQLPWRWGMKYFWDTLLDADLESD LGWQYISG++PDG DR+DNPQ EGYK
Sbjct: 362 SFCVKFLQLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRMDNPQTEGYKH 421
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP GEYVRRWLPEL RLPTEWIHHPW+AP VL+AAG+ELGSNYP P+V + AA+ RL +
Sbjct: 422 DPLGEYVRRWLPELVRLPTEWIHHPWDAPPGVLRAAGVELGSNYPRPVVEVAAARERLRD 481
Query: 480 ALSEMWQQEAASRAAIENGTEEG-LGDSSDSAPIAFPPDI--QMEEIPEPARNN------ 530
A++ MW+QEAA +AA + G EE +GDS A + P++ Q +IP+ + +
Sbjct: 482 AVTHMWEQEAALKAAGDKGIEEASVGDS--IAKVNCQPEVAAQPCKIPKASVSQATNGDM 539
Query: 531 -LPTTARRYEDQMVPSMTTSL 550
+ + DQMVP+ L
Sbjct: 540 EVSSAGSSRRDQMVPTFAKEL 560
>gi|356576533|ref|XP_003556385.1| PREDICTED: cryptochrome-2-like [Glycine max]
Length = 634
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/604 (56%), Positives = 437/604 (72%), Gaps = 14/604 (2%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
G +IVWFRRDLR+EDNPALAA + G+V+ V+IW P+EEG +YPGRVSRWWLK SL+H
Sbjct: 2 GSNRTIVWFRRDLRIEDNPALAAAAKEGSVLPVYIWCPKEEGQFYPGRVSRWWLKQSLAH 61
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
LD SL+SLG+ LV ++ +V++L+E VKA AT++ FNHLYDP+SLVRDH KE L Q
Sbjct: 62 LDQSLKSLGSRLVLIKTHSTVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQ 121
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI--NSGDM 180
GI+V+S+N DLLYEPW+V G+ F TF AFW+KCL M D ++PP ++ G +
Sbjct: 122 GISVQSYNGDLLYEPWEVYSESGRAFTTFNAFWKKCLHMQMDI-VSVVPPWQLIPAEGKV 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
CP + L E+ESEK SNALL RAWSPGW NADKALT F+ L++YSK R K +T
Sbjct: 181 EECPLEELGLENESEKPSNALLGRAWSPGWRNADKALTEFVEQHLLDYSKKRLKVGGDST 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP+LHFGE+SVRKVF + R+KQ+ W NEGN AG+ESVNLFL++IGLREYSRY+ FN
Sbjct: 241 SLLSPYLHFGELSVRKVFQVTRMKQILWTNEGNSAGEESVNLFLRAIGLREYSRYLCFNF 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P++HE+ LLGHLKFF W D FK WRQGRTG+PLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 301 PFTHEKALLGHLKFFPWNPDADIFKNWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVSS 360
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F VK+L LPW+WGMKYFWDTLLDADLESD LGWQYISG +PDG +R+DNP+ +G KFD
Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPEIQGVKFD 420
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP PI+ ID A+ RL EA
Sbjct: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARERLTEA 480
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYED 540
+ +MW+ EAA++AA +E + D+S+S ++ P + D
Sbjct: 481 IFKMWESEAAAKAAGSEPRDEVVVDNSNSLE-------NLDTRKVVVLGKAPCSTISAND 533
Query: 541 QMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNN 600
Q VP++ S E + ++ EE + + + N N++ +++Q + T +++
Sbjct: 534 QKVPALQDS---KNEPPTRKRPKHMVEEGQNQ-DNSQNHNKDTGMSSIDQDICSTADSSS 589
Query: 601 AFQQ 604
+Q
Sbjct: 590 CKKQ 593
>gi|261876465|dbj|BAI47558.1| cryptochrome2 [Glycine max]
Length = 634
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/604 (56%), Positives = 437/604 (72%), Gaps = 14/604 (2%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
G +IVWFRRDLR+EDNPALAA + G+V+ V+IW P+EEG +YPGRVSRWWLK SL+H
Sbjct: 2 GSNRTIVWFRRDLRIEDNPALAAAAKEGSVLPVYIWCPKEEGQFYPGRVSRWWLKQSLAH 61
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
LD SL+SLG+ LV ++ +V++L+E VKA AT++ FNHLYDP+SLVRDH KE L Q
Sbjct: 62 LDQSLKSLGSRLVLIKTHSTVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQ 121
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI--NSGDM 180
GI+V+S+N DLLYEPW+V G+ F TF AFW+KCL M D ++PP ++ G +
Sbjct: 122 GISVQSYNGDLLYEPWEVYSESGRAFTTFNAFWKKCLHMQMDI-VSVVPPWQLIPAEGKV 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
CP + L E+ESEK SNALL RAWSPGW NADKALT F+ L++YSK R K +T
Sbjct: 181 EECPLEELGLENESEKPSNALLGRAWSPGWRNADKALTEFVEQHLLDYSKKRLKVGGDST 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP+LHFGE+SVRKVF + R+KQ+ W NEGN AG+ESVNLFL++IGLREYSRY+ FN
Sbjct: 241 SLLSPYLHFGELSVRKVFQVTRMKQILWTNEGNSAGEESVNLFLRAIGLREYSRYLCFNF 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P++HE+ LLGHLKFF W D FK WRQGRTG+PLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 301 PFTHEKALLGHLKFFPWNPDADIFKNWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVSS 360
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F VK+L LPW+WGMKYFWDTLLDADLESD LGWQYISG +PDG +R+DNP+ +G KFD
Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHEPERLDNPEIQGVKFD 420
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP PI+ ID A+ RL EA
Sbjct: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARERLIEA 480
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYED 540
+ +MW+ EAA++AA +E + D+S+S ++ P + D
Sbjct: 481 IFKMWESEAAAKAAGSEPRDEVVVDNSNSLE-------NLDTRKVVVLGKAPCSTISAND 533
Query: 541 QMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNN 600
Q VP++ S E + ++ EE + + + N N++ +++Q + T +++
Sbjct: 534 QKVPALQDS---KNEPPTRKRPKHMVEEGQNQ-DNSQNHNKDTGMSSIDQDICSTADSSS 589
Query: 601 AFQQ 604
+Q
Sbjct: 590 CKKQ 593
>gi|45935260|gb|AAS79665.1| cryptochrome 2A apoprotein [Pisum sativum]
gi|45935262|gb|AAS79666.1| cryptochrome 2A apoprotein [Pisum sativum]
Length = 629
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/592 (55%), Positives = 427/592 (72%), Gaps = 19/592 (3%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
G +IVWFRRDLR+EDNPALAA R G+V VFIW P+EEG +YPGRVSRWWLK SL+H
Sbjct: 2 GSNRTIVWFRRDLRIEDNPALAAAARDGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAH 61
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
LD SL+SLG LV ++ ++++LLE V A AT++ FNHLYDP+SLVRDH KE L
Sbjct: 62 LDQSLKSLGAKLVLIKTDSTLNALLECVNAIQATKVVFNHLYDPVSLVRDHNIKEKLVEL 121
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI--NSGDM 180
GI+V+S+N DLLYEPW++ D +G F TF FWE+CL +P L+PP ++ G +
Sbjct: 122 GISVKSYNGDLLYEPWELYDEKGHAFTTFDPFWERCLHKQMEP-VSLIPPWQLIPAKGKV 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
RC + L E+E EK SNALL RAWSPGW NA+KALT F++ L+ YSKNR+K +T
Sbjct: 181 ERCSIEDLGLENELEKPSNALLGRAWSPGWGNANKALTEFMDKQLLNYSKNRQKVGGDST 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP+LHFGE+SVRKVF + R+KQ+SW NEGN G ESV LFL++IGLREYSRY+ FN
Sbjct: 241 SLLSPYLHFGELSVRKVFQMARVKQISWGNEGNSVGKESVTLFLRAIGLREYSRYLCFNF 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P++HER LLGHL FF W D FK WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 301 PFTHERALLGHLSFFPWNADPSNFKTWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 360
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F VK+L LPW+WGMKYFWDTLLDADLE D LGWQYISG +PDG +R+D+P+ G KFD
Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLECDILGWQYISGCLPDGHELERLDDPEILGAKFD 420
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P GEYVR+WLPELAR+PTEWIHHPWNAP SVL+A+G+ELG NYP PI+ ID A+ +L +A
Sbjct: 421 PEGEYVRQWLPELARMPTEWIHHPWNAPLSVLRASGVELGQNYPNPIIDIDLAREKLTQA 480
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPA-RNNLPTTARRYE 539
+ +MW+ +AAS+A+ +E + D+ + ++IP+ ++ P
Sbjct: 481 IFKMWEIQAASKASGSEARDEVVVDNEN------------QDIPKVILKDKGPCVTISAN 528
Query: 540 DQMVPSM--TTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLN 589
DQ VP++ + + V + + +E + +ES +++ V+ P ++T +
Sbjct: 529 DQKVPALPDPKNELPVRKRKKGMEEKGKEQESSVNNEKDSKVSS-PDQETCS 579
>gi|359477655|ref|XP_002285169.2| PREDICTED: cryptochrome-2-like [Vitis vinifera]
gi|296083651|emb|CBI23640.3| unnamed protein product [Vitis vinifera]
Length = 646
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/551 (59%), Positives = 409/551 (74%), Gaps = 10/551 (1%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
MS ++VWFRRDLRV+DNPALA + G+V+ VFIW P+EEG +YPGRVSRWWLK SL
Sbjct: 1 MSSDSRTVVWFRRDLRVDDNPALATAAKEGSVLPVFIWCPKEEGQFYPGRVSRWWLKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
HL SLRSLG L+ ++ ++ +LLE + A GAT+L +NHLYDP+SLVRDH K+ L
Sbjct: 61 MHLKQSLRSLGADLLLIKAESTIEALLECIHAIGATKLVYNHLYDPISLVRDHSIKQKLM 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI--NSG 178
G++V+S+N DLLY+PWD+ D +G F TF A+W KCLSM + LLPP R+ +G
Sbjct: 121 ELGMSVQSYNGDLLYKPWDIYDDKGNAFTTFEAYWNKCLSMQME-FVSLLPPWRLVPAAG 179
Query: 179 DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
++ C + L EDESEK SNALL R WSPGWSNADKALT FI L +YSK R K +
Sbjct: 180 KVNNCSIEELGLEDESEKSSNALLGRGWSPGWSNADKALTEFIEQHLFDYSKKRLKVEGN 239
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
+TS LSP+LHFGE+SVRKV H VR+KQ+ W EGN +ESV+LFL++IGLREYSRY+ F
Sbjct: 240 STSLLSPYLHFGELSVRKVLHSVRMKQLLWVKEGNSVWEESVDLFLRAIGLREYSRYLCF 299
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
N P +HERPLL +LK F W +FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+V
Sbjct: 300 NFPSTHERPLLSNLKHFPWHAHHVHFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 359
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
SSF VK L LPW+WGMKYFWDTLLDADLESD LGWQYISG++PDG DR+D+P+ +G
Sbjct: 360 SSFAVKFLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRLDSPEIQGSN 419
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
+DP GEYVR WLPELAR+PTEWIHHPW+AP +VL++AG+ELG NYP PI+ ID A+ RL
Sbjct: 420 YDPEGEYVRHWLPELARVPTEWIHHPWDAPFTVLKSAGVELGQNYPKPIIEIDLARERLT 479
Query: 479 EALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRY 538
EA+ MW+++AA++ A NGT E + D+SDS ++ + + + PT++
Sbjct: 480 EAIFMMWEKDAATKVANSNGTNEEVVDNSDSI-----ENLSIANVSVKEKTPCPTSSSH- 533
Query: 539 EDQMVPSMTTS 549
DQ VP+ S
Sbjct: 534 -DQRVPTFQNS 543
>gi|227344531|gb|ACP27856.1| blue light photoreceptor [Fragaria vesca]
gi|270303922|gb|ACZ71184.1| blue light photoreceptor [Fragaria vesca]
Length = 645
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/554 (59%), Positives = 418/554 (75%), Gaps = 16/554 (2%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
M +IVWFRRDLR+EDNPALAA R GAV V+IW P++EG +YPGRVSRWWLK SL
Sbjct: 1 MGSSNKTIVWFRRDLRIEDNPALAAAARDGAVFPVYIWCPKDEGHFYPGRVSRWWLKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HLD SL+SLG L ++ +VS+LL+ ++A GAT++ FNHLYDP+SLVRDH K L
Sbjct: 61 AHLDQSLKSLGAQLALIKTDSTVSALLDCIQAIGATKVVFNHLYDPVSLVRDHNIKGKLV 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI--NSG 178
GI+V+S+NADLL+EPW+V DA+GQ F TF +W+KCL+M + LPP ++ +G
Sbjct: 121 ELGISVQSYNADLLHEPWEVYDAKGQTFTTFKEYWDKCLNMEREL-VTFLPPWKLLQATG 179
Query: 179 DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
+++ + L E+E+EK SNALL RAW+PGWS ADKALT F + L++Y+KNR K
Sbjct: 180 MVAKYSLEELGLENETEKSSNALLGRAWTPGWSQADKALTEFFDVHLLDYAKNRTKLGGN 239
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
+TS LSP+LHFGEVSVRKVF L R+KQ+ +A EGN G+ESV LFL++IGLRE+SRY+ F
Sbjct: 240 STSLLSPYLHFGEVSVRKVFQLARMKQILFAKEGNSLGEESVTLFLRAIGLREFSRYICF 299
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
N P++HE+ LL +L+FF W D+G FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+V
Sbjct: 300 NFPFTHEKLLLSNLRFFPWKADQGRFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 359
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
SSF VKVL LPW+WGMKYFWDTL+DADLESD LGWQYISG++PDG +R+D+P+ +G K
Sbjct: 360 SSFAVKVLLLPWKWGMKYFWDTLMDADLESDILGWQYISGSLPDGHELERLDSPEVQGSK 419
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FDP+GEYVR WLPELARLPTEWIHHPW+ P++VL+ +G+ELG NYP PI+ ID A+ RL
Sbjct: 420 FDPDGEYVRHWLPELARLPTEWIHHPWDTPDNVLKVSGVELGVNYPRPIIEIDLARERLT 479
Query: 479 EALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPA---RNNLPTTA 535
EA+ +MW+ EAA++AA NGT E + D+SD +E P P RNN P
Sbjct: 480 EAIFKMWEIEAAAKAANLNGTNEVVVDNSDG----------IENFPIPKVILRNNTPCAT 529
Query: 536 RRYEDQMVPSMTTS 549
DQ VPS S
Sbjct: 530 YSSNDQKVPSCHNS 543
>gi|401782500|dbj|BAM36553.1| cryptochrome 2 [Fragaria x ananassa]
Length = 646
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/592 (57%), Positives = 437/592 (73%), Gaps = 24/592 (4%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
M +IVWFRRDLR+EDNPALAA VR GAV V+IW P++EG +YPGRVSRWWLK SL
Sbjct: 1 MGSSNKTIVWFRRDLRIEDNPALAAAVRDGAVFPVYIWCPKDEGHFYPGRVSRWWLKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HLD SL+SLG L ++ +VS++L+ ++A GAT++ FNHLYDP+SLVRDH K L
Sbjct: 61 AHLDQSLKSLGAQLALIKTDSTVSAILDCIQAIGATKVVFNHLYDPVSLVRDHNIKGKLV 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI--NSG 178
GI+V+S+NADLL+EPW++ DA+GQ F TF +W+KCL+M + LPP ++ +G
Sbjct: 121 ELGISVQSYNADLLHEPWEIYDAKGQTFTTFKEYWDKCLNMEREL-VTFLPPWKLLQAAG 179
Query: 179 DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
+++ + L E+E+EK SNALL RAW+PGWS ADKALT F + L++Y+KNR K
Sbjct: 180 TVAKYSIEELGLENETEKSSNALLGRAWTPGWSQADKALTEFFDVHLLDYAKNRTKLGGN 239
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
+TS LSP+LHFGEVSVRKVF + R+KQ+ +A EGN G+ESV LFL++IGLRE+SRY+ F
Sbjct: 240 STSLLSPYLHFGEVSVRKVFQVARMKQILFAKEGNSLGEESVTLFLRAIGLREFSRYICF 299
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
N P++HE+ LL +L+FF W D+G FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+V
Sbjct: 300 NFPFTHEKLLLSNLRFFPWKADQGRFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 359
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
SSF VKVL LPW+WGMKYFWDTL+DADLESD LGWQYISG++PDG +R+D+P+ +G K
Sbjct: 360 SSFAVKVLLLPWKWGMKYFWDTLMDADLESDILGWQYISGSLPDGHELERLDSPEVQGSK 419
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FDP+GEYVR WLPELARLPTEWIHHPW+ P++VL+ +G+ELG NYP PI+ ID A+ RL
Sbjct: 420 FDPDGEYVRHWLPELARLPTEWIHHPWDTPDNVLRVSGVELGVNYPRPIIEIDLARERLT 479
Query: 479 EALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPA---RNNLPTTA 535
EA+ +MW++EAA++AA NGT E + D+SD +E +P P RNN P
Sbjct: 480 EAIFKMWEKEAAAKAANLNGTNEVVVDNSDG----------IENLPIPKVILRNNTPCAT 529
Query: 536 RRYEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDT 587
DQ VPS S E + L+ R+ + R +P NA+ N P T
Sbjct: 530 YSSNDQKVPSCHNS------EGNQLKKRSRCTQERP-LPDNAH-NTNPNEAT 573
>gi|261876461|dbj|BAI47556.1| cryptochrome2 [Glycine max]
Length = 634
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/604 (55%), Positives = 431/604 (71%), Gaps = 14/604 (2%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
G +IVWFRRDLR+EDNPALAA + G+V+ V++W P+EEG +YPGRVSRWWLK SL+H
Sbjct: 2 GSNRTIVWFRRDLRIEDNPALAAAAKEGSVLPVYVWCPKEEGQFYPGRVSRWWLKQSLAH 61
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
LD SL+SLG+ LV ++ + +L+E VKA AT++ FNHLYDP+SLVRDH KE L Q
Sbjct: 62 LDQSLKSLGSRLVLIKTHSTAVALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQ 121
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI--NSGDM 180
GI+V+S+N DLLYEPW+VN G+ F TF AFW+KCL M D ++PP ++ G +
Sbjct: 122 GISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHMQMDI-VSVVPPWQLIPAEGKI 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
C + L E+ESEK SNALL RAWSPGW NADKAL F+ L+ YSK R K +T
Sbjct: 181 EECSLEELGLENESEKPSNALLGRAWSPGWRNADKALREFVELHLLHYSKKRLKVGGEST 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP+LHFGE+S RKVF + +KQ+ W NEGN AG+ES NLFL++IGLREYSRY+ FN
Sbjct: 241 SLLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRAIGLREYSRYLCFNF 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P++HER LLGHLKFF W D FK WRQGRTG+PLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 301 PFTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVSS 360
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F VK+L LPW+WGMKYFWDTLLDADLESD LGWQYISG +PDG +R+DNP+ +G KFD
Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPEIQGAKFD 420
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP PI+ ID A+ RL EA
Sbjct: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARERLTEA 480
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYED 540
+ +MW+ EAA++AA +E + D+S + ++ +++ P D
Sbjct: 481 IFKMWESEAAAKAAGSEPRDEVVVDNSHTV-----ENLDTQKV--VVLGKAPCATISAND 533
Query: 541 QMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNN 600
Q VP++ S E + ++ EE + + + N N++ +++Q + T +++
Sbjct: 534 QKVPALQDS---KNEPPTRKRPKHMIEEGQNQ-DHSQNHNKDTGLSSIDQDICSTADSSS 589
Query: 601 AFQQ 604
+Q
Sbjct: 590 CKKQ 593
>gi|351734424|ref|NP_001235220.1| cryptochrome 2 [Glycine max]
gi|89199718|gb|ABD63262.1| cryptochrome 2 [Glycine max]
Length = 634
Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/604 (54%), Positives = 430/604 (71%), Gaps = 14/604 (2%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
G +IVWFRRDLR+EDNPAL A + G+V+ V++W P+EEG +YPGRVSRWWLK SL+H
Sbjct: 2 GSNRTIVWFRRDLRIEDNPALTAAAKEGSVLPVYVWCPKEEGQFYPGRVSRWWLKQSLAH 61
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
LD SL+SLG+ LV ++ + +L+E VKA AT++ FNHLYDP+SLVRDH KE L Q
Sbjct: 62 LDQSLKSLGSRLVLIKTHSTAVALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQ 121
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI--NSGDM 180
GI+V+S+N DLLYEPW+VN G+ F TF AFW+KCL M D ++PP ++ G +
Sbjct: 122 GISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHMQMDI-VSVVPPWQLIPAEGKI 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
C + L E+ESEK SNALL RAWSPGW NADKAL F+ L+ YSK R K +T
Sbjct: 181 EECSLEELGLENESEKPSNALLGRAWSPGWRNADKALREFVELHLLHYSKKRLKVGGEST 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP+LHFGE+S RKVF + +KQ+ W NEGN AG+ES NLFL++IGLREYSRY+ FN
Sbjct: 241 SLLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRAIGLREYSRYLCFNF 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P++HER LLGHLKFF W D FK WRQGRTG+PLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 301 PFTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVSS 360
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F VK+L LPW+WGMKYFWDTLLDADLESD LGWQYISG +PDG +R+DNP+ +G KFD
Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPEIQGAKFD 420
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP PI+ ID A+ RL EA
Sbjct: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARERLTEA 480
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYED 540
+ +MW+ EAA++AA +E + D+S + ++ +++ P D
Sbjct: 481 IFKMWESEAAAKAAGSEPRDEVVVDNSHTV-----ENLDTQKV--VVLGKAPCATISAND 533
Query: 541 QMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNN 600
Q VP++ S E + ++ EE + + + N N++ +++Q + T +++
Sbjct: 534 QKVPALQDS---KNEPPTRKRPKHMIEEGQNQ-DHSQNHNKDTGLSSIDQDICSTADSSS 589
Query: 601 AFQQ 604
+Q
Sbjct: 590 CKKQ 593
>gi|343403537|dbj|BAK61591.1| cryptochrome2a [Glycine soja]
gi|343403539|dbj|BAK61592.1| cryptochrome2a [Glycine soja]
gi|343403541|dbj|BAK61593.1| cryptochrome2a [Glycine soja]
gi|343403543|dbj|BAK61594.1| cryptochrome2a [Glycine soja]
gi|343403545|dbj|BAK61595.1| cryptochrome2a [Glycine soja]
gi|343403547|dbj|BAK61596.1| cryptochrome2a [Glycine soja]
gi|343403549|dbj|BAK61597.1| cryptochrome2a [Glycine soja]
Length = 631
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/604 (54%), Positives = 430/604 (71%), Gaps = 14/604 (2%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
G +IVWFRRDLR+EDNPAL A + G+V+ V++W P+EEG +YPGRVSRWWLK SL+H
Sbjct: 2 GSNRTIVWFRRDLRIEDNPALTAAAKEGSVLPVYVWCPKEEGQFYPGRVSRWWLKQSLAH 61
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
LD SL+SLG+ LV ++ + +L+E VKA AT++ FNHLYDP+SLVRDH KE L Q
Sbjct: 62 LDQSLKSLGSRLVLIKTHSTAVALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQ 121
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI--NSGDM 180
GI+V+S+N DLLYEPW+VN G+ F TF AFW+KCL M D ++PP ++ G +
Sbjct: 122 GISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHMQMDI-VSVVPPWQLIPAEGKI 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
C + L E+ESEK SNALL RAWSPGW NADKAL F+ L+ YSK R K +T
Sbjct: 181 EECSLEELGLENESEKPSNALLGRAWSPGWRNADKALREFVELHLLHYSKKRLKVGGEST 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP+LHFGE+S RKVF + +KQ+ W NEGN AG+ES NLFL++IGLREYSRY+ FN
Sbjct: 241 SLLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRAIGLREYSRYLCFNF 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P++HER LLGHLKFF W D FK WRQGRTG+PLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 301 PFTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVSS 360
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F VK+L LPW+WGMKYFWDTLLDADLESD LGWQYISG +PDG +R+DNP+ +G KFD
Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPEIQGAKFD 420
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP PI+ ID A+ RL EA
Sbjct: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARERLTEA 480
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYED 540
+ +MW+ EAA++AA +E + D+S + ++ +++ P D
Sbjct: 481 IFKMWESEAAAKAAGSEPRDEVVVDNSHTV-----ENLDTQKV--VVLGKAPCATISAND 533
Query: 541 QMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNN 600
Q VP++ S E + ++ EE + + + N N++ +++Q + T +++
Sbjct: 534 QKVPALQDS---KNEPPTRKRPKHMIEEGQNQ-DHSQNHNKDTGLSSIDQDICSTADSSS 589
Query: 601 AFQQ 604
+Q
Sbjct: 590 CKKQ 593
>gi|147810570|emb|CAN71971.1| hypothetical protein VITISV_015253 [Vitis vinifera]
Length = 641
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/551 (58%), Positives = 407/551 (73%), Gaps = 10/551 (1%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
MS ++VWFRRDLRV+DNPALA + G+V+ VFIW P+EEG +YPGRVSRWWLK SL
Sbjct: 1 MSSDSRTVVWFRRDLRVDDNPALATAAKEGSVLPVFIWCPKEEGQFYPGRVSRWWLKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
HL SLRSLG L+ ++ ++ +LLE + A GAT+L +NHLYDP+SLVRDH K+ L
Sbjct: 61 MHLKQSLRSLGADLLLIKAESTIEALLECIHAIGATKLVYNHLYDPISLVRDHSIKQKLM 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI--NSG 178
G++V+S+N DLLY+PWD+ D +G F TF A+W KCLS + LLPP R+ +G
Sbjct: 121 ELGMSVQSYNGDLLYKPWDIYDDKGNAFTTFEAYWNKCLSXQMEF-VSLLPPWRLVPAAG 179
Query: 179 DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
++ C + L EDESEK SNALL R WSPGWSNADKALT FI L +YSK R K +
Sbjct: 180 KVNNCSIEELGLEDESEKSSNALLGRGWSPGWSNADKALTEFIEQHLFDYSKXRLKVEGN 239
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
+TS LSP+LHFGE+SVRKV H VR+KQ+ W EGN +ESV+LFL++IGLREYSRY+ F
Sbjct: 240 STSLLSPYLHFGELSVRKVLHSVRMKQLLWVKEGNSVWEESVDLFLRAIGLREYSRYLCF 299
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
N P +HERPLL +LK F W +FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+V
Sbjct: 300 NFPSTHERPLLSNLKHFPWHAXHVHFKAWRQGRTGYPLVDAGMRELWATGWIHNRIRVIV 359
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
SSF VK L LPW+WGMKYFWDTLLDADLESD LGWQYISG++PDG DR+D+P+ +G
Sbjct: 360 SSFAVKFLLLPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRLDSPEIQGSN 419
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
+DP GEYVR WLPELAR+PTEWIHHPW+AP +VL++AG+ELG NYP PI+ ID A+ RL
Sbjct: 420 YDPEGEYVRHWLPELARVPTEWIHHPWDAPFTVLKSAGVELGQNYPKPIIEIDLARERLT 479
Query: 479 EALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRY 538
EA+ MW+++AA + A NGT E + D+SD ++ ++E + PT++
Sbjct: 480 EAIFMMWEKDAAXKVANSNGTNEEVVDNSDXIENLXIANVXVKE-----KTPCPTSSSH- 533
Query: 539 EDQMVPSMTTS 549
DQ VP+ S
Sbjct: 534 -DQRVPTFQNS 543
>gi|224112573|ref|XP_002332746.1| predicted protein [Populus trichocarpa]
gi|222833074|gb|EEE71551.1| predicted protein [Populus trichocarpa]
Length = 646
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/549 (59%), Positives = 412/549 (75%), Gaps = 13/549 (2%)
Query: 4 RGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHL 63
R +IVWFRRDLR+EDNPALAA R G V VFIW P+EEG +YPGRVSRWWLK SL+HL
Sbjct: 3 RSKTIVWFRRDLRIEDNPALAAAARDGCVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAHL 62
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
SL+SLG LV ++ +V++LL+ ++ GAT++ FNHLYDP+SLVRDH KE L G
Sbjct: 63 GQSLKSLGAELVLIKTHSTVAALLDCIETIGATRVVFNHLYDPVSLVRDHNIKEKLVELG 122
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI--NSGDMS 181
I+V+S+N DLLYEPW++ D +G F TF A+W++CL M +P LPP R+ +G +
Sbjct: 123 ISVQSYNGDLLYEPWEIYDERGHAFTTFEAYWDRCLHMQMEP-VSHLPPWRLVPAAGTVM 181
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
+C + L EDE+EK SN+LL R WSPGWSNADKALT F LI+Y ++R K + +TS
Sbjct: 182 KCSVEELGLEDEAEKSSNSLLGRGWSPGWSNADKALTEFAEQHLIDYVESRLKVGT-STS 240
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+LHFGE+SVRKVF V++KQ+ WA E N G ESV LFL+SIGLREYSRY+ FN P
Sbjct: 241 LLSPYLHFGELSVRKVFQCVQLKQLLWAKEENLMGKESVTLFLRSIGLREYSRYLCFNFP 300
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
++HER LL +LK+F W ++ +FKAWRQGRTGYPLVDAGMRELWATGW+H++IRV+VSSF
Sbjct: 301 FTHERSLLRNLKYFPWNDNQVHFKAWRQGRTGYPLVDAGMRELWATGWIHNKIRVIVSSF 360
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VKVL LPWRWGMKYFWDTLLDADLESD LGWQYISG++PD +R+DNP+ +G KFDP
Sbjct: 361 AVKVLLLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDAHELERLDNPEIQGSKFDP 420
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
GEYVRRWLPELAR+P EWIHHPW+A +VL+AAG+ELG NYP PI+ ID A+ RL EA+
Sbjct: 421 EGEYVRRWLPELARMPAEWIHHPWDASIAVLKAAGVELGINYPKPIIDIDLARERLMEAI 480
Query: 482 SEMWQQEAASRAAIENGTEEGLGDSSDSAP-IAFPPDIQMEEIPEPARNNLPTTARRYED 540
+MW+ EAA+RA+ NGT E + D++D +A P + +++ P ++ D
Sbjct: 481 FKMWEMEAAARASNTNGTNEVVVDNTDDTENLAIPKVVLKDKVTCPTNSS--------ND 532
Query: 541 QMVPSMTTS 549
Q VP+ S
Sbjct: 533 QRVPTNQNS 541
>gi|261876459|dbj|BAI47555.1| cryptochrome2 [Glycine max]
Length = 642
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/604 (54%), Positives = 430/604 (71%), Gaps = 14/604 (2%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
G +IVWFRRDLR+EDNPAL A + G+V+ V++W P+EEG +YPGRVSRWWLK SL+H
Sbjct: 2 GSNRTIVWFRRDLRIEDNPALTAAAKEGSVLPVYVWCPKEEGQFYPGRVSRWWLKQSLAH 61
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
LD SL+SLG+ LV ++ + +L+E VKA AT++ FNHLYDP+SLVRDH KE L Q
Sbjct: 62 LDQSLKSLGSRLVLIKTHSTAVALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQ 121
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI--NSGDM 180
GI+V+S+N DLLYEPW+VN G+ F TF AFW+KCL + D ++PP ++ G +
Sbjct: 122 GISVQSYNGDLLYEPWEVNSESGRAFTTFNAFWKKCLHVQMDI-VSVVPPWQLIPAEGKI 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
C + L E+ESEK SNALL RAWSPGW NAD+AL F+ L+ YSK R K +T
Sbjct: 181 EECSLEELGLENESEKPSNALLGRAWSPGWRNADRALREFVELHLLHYSKKRLKVGGEST 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP+LHFGE+S RKVF + +KQ+ W NEGN AG+ES NLFL++IGLREYSRY+ FN
Sbjct: 241 SLLSPYLHFGELSARKVFQVTCMKQILWTNEGNSAGEESANLFLRAIGLREYSRYLCFNF 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P++HER LLGHLKFF W D FK WRQGRTG+PLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 301 PFTHERALLGHLKFFPWNPDPDIFKTWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVSS 360
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F VK+L LPW+WGMKYFWDTLLDADLESD LGWQYISG +PDG +R+DNP+ +G KFD
Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPEIQGAKFD 420
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P GEYVR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP PI+ ID A+ RL EA
Sbjct: 421 PEGEYVRQWLPELARMPTEWIHHPWDAPLTVLRAAGVELGQNYPKPIIDIDLARERLTEA 480
Query: 481 LSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYED 540
+ +MW+ EAA++AA +E + D+S + ++ +++ P D
Sbjct: 481 IFKMWESEAAAKAAGSEPRDEVVVDNSHTV-----ENLDTQKV--VVLGKAPCATISAND 533
Query: 541 QMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNN 600
Q VP++ S E + ++ EE + + + N N++ +++Q + T +++
Sbjct: 534 QKVPALQDS---KNEPPTRKRPKHMIEEGQNQ-DHSQNHNKDTGLSSIDQDICSTADSSS 589
Query: 601 AFQQ 604
+Q
Sbjct: 590 CKKQ 593
>gi|410717422|gb|AFV79087.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717424|gb|AFV79088.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717426|gb|AFV79089.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717432|gb|AFV79092.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717434|gb|AFV79093.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717436|gb|AFV79094.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717438|gb|AFV79095.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717440|gb|AFV79096.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717442|gb|AFV79097.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717444|gb|AFV79098.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717446|gb|AFV79099.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717448|gb|AFV79100.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717450|gb|AFV79101.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717452|gb|AFV79102.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717456|gb|AFV79104.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717460|gb|AFV79106.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717462|gb|AFV79107.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717464|gb|AFV79108.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717466|gb|AFV79109.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717470|gb|AFV79111.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717472|gb|AFV79112.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717474|gb|AFV79113.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717476|gb|AFV79114.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717478|gb|AFV79115.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717480|gb|AFV79116.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717482|gb|AFV79117.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717484|gb|AFV79118.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717486|gb|AFV79119.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717488|gb|AFV79120.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717490|gb|AFV79121.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717492|gb|AFV79122.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717494|gb|AFV79123.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717498|gb|AFV79125.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717500|gb|AFV79126.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717502|gb|AFV79127.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717504|gb|AFV79128.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717506|gb|AFV79129.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717508|gb|AFV79130.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717512|gb|AFV79132.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717516|gb|AFV79134.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717518|gb|AFV79135.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717522|gb|AFV79137.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717526|gb|AFV79139.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717528|gb|AFV79140.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717530|gb|AFV79141.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717532|gb|AFV79142.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717534|gb|AFV79143.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717536|gb|AFV79144.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717538|gb|AFV79145.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717542|gb|AFV79147.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717544|gb|AFV79148.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717546|gb|AFV79149.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717548|gb|AFV79150.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717550|gb|AFV79151.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717552|gb|AFV79152.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717554|gb|AFV79153.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717556|gb|AFV79154.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717558|gb|AFV79155.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717560|gb|AFV79156.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717562|gb|AFV79157.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717564|gb|AFV79158.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717566|gb|AFV79159.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717568|gb|AFV79160.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717570|gb|AFV79161.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717574|gb|AFV79163.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717576|gb|AFV79164.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717578|gb|AFV79165.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717582|gb|AFV79167.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717584|gb|AFV79168.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717588|gb|AFV79170.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717590|gb|AFV79171.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717592|gb|AFV79172.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717594|gb|AFV79173.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717596|gb|AFV79174.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717598|gb|AFV79175.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717600|gb|AFV79176.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717602|gb|AFV79177.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717604|gb|AFV79178.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717606|gb|AFV79179.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717608|gb|AFV79180.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717612|gb|AFV79182.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717614|gb|AFV79183.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717616|gb|AFV79184.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717618|gb|AFV79185.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717620|gb|AFV79186.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717622|gb|AFV79187.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717624|gb|AFV79188.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717626|gb|AFV79189.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717628|gb|AFV79190.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717630|gb|AFV79191.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717632|gb|AFV79192.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717634|gb|AFV79193.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717636|gb|AFV79194.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717638|gb|AFV79195.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717640|gb|AFV79196.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717642|gb|AFV79197.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717644|gb|AFV79198.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717646|gb|AFV79199.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717648|gb|AFV79200.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717650|gb|AFV79201.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717652|gb|AFV79202.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717654|gb|AFV79203.1| cryptochrome 1, partial [Pinus sylvestris]
Length = 572
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/555 (62%), Positives = 423/555 (76%), Gaps = 15/555 (2%)
Query: 140 VNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSN 199
+ND +G F+TF A+W KCL+MP+DP APLLPPKRI +G++S CPSD L EDESEK SN
Sbjct: 1 INDEEGHAFSTFQAYWNKCLNMPYDPSAPLLPPKRIVAGEVSNCPSDDLKLEDESEKASN 60
Query: 200 ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFH 259
ALLARAWSPGWS+ADKALTTFINGPL++Y+ NR+KADSATTS LSPHLHFGE+SVRKVFH
Sbjct: 61 ALLARAWSPGWSSADKALTTFINGPLLDYALNRQKADSATTSLLSPHLHFGELSVRKVFH 120
Query: 260 LVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVV 319
LVRI+QV WANEGN +G++SVNLFLKSIGLREYSRY+SFN P SHERPLL HL +F W V
Sbjct: 121 LVRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPSSHERPLLSHLNYFPWRV 180
Query: 320 DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD 379
D YFK+WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD
Sbjct: 181 DRDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD 240
Query: 380 TLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTE 439
TLLDADLE DALGWQYISG +PDGR DRIDNPQFEGYKFDP GEYVRRWLPELARLPT+
Sbjct: 241 TLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTQ 300
Query: 440 WIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGT 499
WIHHPW+AP++VLQ+AG+ELGSNYP PIV I AK RL +ALSEMWQ+EAA+RA++ENGT
Sbjct: 301 WIHHPWDAPQAVLQSAGVELGSNYPLPIVEISTAKERLQDALSEMWQREAAARASLENGT 360
Query: 500 EEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESS 559
EEGLG+S ++A + ++ ++ EP R+N AR +DQ+VPS++ + R + +
Sbjct: 361 EEGLGESLENANASLSENMDVDR--EPVRDNTGFAARSQDDQLVPSISNMVHRADVTYTL 418
Query: 560 LELRNSAEESRAEVPRN--------ANVNQEPRRDT--LNQGVLQTVHNNNAFQQFNAAI 609
+ +SA +AEVP N A+ Q + T + +G+++ + N + A+
Sbjct: 419 SQAASSARSEQAEVPSNRDSGTASAASSQQFLGQSTWSMTRGLIEDLPNVISHYPQMQAL 478
Query: 610 VLANAEDSTAESSSTSRRERD---GGVVPVWSPATSSYSEQLVGDENGIGTSSSYLQRHP 666
+ STA+SSS R D GG+VPVWS + S +S+Q + GT+ S LQ+
Sbjct: 479 DEQSESHSTADSSSILRVRDDTSSGGIVPVWSQSLSGHSQQFPEEGTVPGTAESSLQQQL 538
Query: 667 QSHQIMNCRRLSQTG 681
+H + R G
Sbjct: 539 HNHSMGTWRHGHNQG 553
>gi|410717496|gb|AFV79124.1| cryptochrome 1, partial [Pinus sylvestris]
Length = 572
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/555 (62%), Positives = 422/555 (76%), Gaps = 15/555 (2%)
Query: 140 VNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSN 199
VND +G F+TF A+W KCL+MP+DP APLLPPKRI +G++S CPSD L EDESEK SN
Sbjct: 1 VNDEEGHAFSTFQAYWNKCLNMPYDPSAPLLPPKRIVAGEVSNCPSDDLKLEDESEKASN 60
Query: 200 ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFH 259
ALLARAWSPGWS+ADKALT FINGPL++Y+ NR+KADSATTS LSPHLHFGE+SVRKVFH
Sbjct: 61 ALLARAWSPGWSSADKALTAFINGPLLDYALNRQKADSATTSLLSPHLHFGELSVRKVFH 120
Query: 260 LVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVV 319
LVRI+QV WANEGN +G++SVNLFLKSIGLREYSRY+SFN P SHERPLL HL +F W V
Sbjct: 121 LVRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPSSHERPLLSHLNYFPWRV 180
Query: 320 DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD 379
D YFK+WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD
Sbjct: 181 DRDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD 240
Query: 380 TLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTE 439
TLLDADLE DALGWQYISG +PDGR DRIDNPQFEGYKFDP GEYVRRWLPELARLPT+
Sbjct: 241 TLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTQ 300
Query: 440 WIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGT 499
WIHHPW+AP++VLQ+AG+ELGSNYP PIV I AK RL +ALSEMWQ+EAA+RA++ENGT
Sbjct: 301 WIHHPWDAPQAVLQSAGVELGSNYPLPIVEISTAKERLQDALSEMWQREAAARASLENGT 360
Query: 500 EEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESS 559
EEGLG+S ++A + ++ ++ EP R+N AR +DQ+VPS++ + R + +
Sbjct: 361 EEGLGESLENANASLSENMDVDR--EPVRDNTGFAARSQDDQLVPSISNMVHRADVTYTL 418
Query: 560 LELRNSAEESRAEVPRN--------ANVNQEPRRDT--LNQGVLQTVHNNNAFQQFNAAI 609
+ +SA +AEVP N A+ Q + T + +G+++ + N + A+
Sbjct: 419 SQAASSARSEQAEVPSNRDSGTASAASSQQFLGQSTWSMTRGLIEDLPNVISHYPQMQAL 478
Query: 610 VLANAEDSTAESSSTSRRERD---GGVVPVWSPATSSYSEQLVGDENGIGTSSSYLQRHP 666
+ STA+SSS R D GG+VPVWS + S +S+Q + GT+ S LQ+
Sbjct: 479 DEQSESHSTADSSSILRMRDDTSSGGIVPVWSQSLSGHSQQFPEEGTVPGTAESSLQQQL 538
Query: 667 QSHQIMNCRRLSQTG 681
+H + R G
Sbjct: 539 HNHSMGTWRHGHNQG 553
>gi|410717420|gb|AFV79086.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717458|gb|AFV79105.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717468|gb|AFV79110.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717520|gb|AFV79136.1| cryptochrome 1, partial [Pinus sylvestris]
Length = 572
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/555 (62%), Positives = 422/555 (76%), Gaps = 15/555 (2%)
Query: 140 VNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSN 199
+ND +G F+TF A+W KCL+MP+DP APLLPPKRI +G++S CPSD L EDESEK SN
Sbjct: 1 INDEEGHAFSTFQAYWNKCLNMPYDPSAPLLPPKRIVAGEVSNCPSDDLKLEDESEKASN 60
Query: 200 ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFH 259
ALLARAWSPGWS+ADKALTTFINGPL++Y+ NR+KADSATTS LSPHLHFGE+SVRKVFH
Sbjct: 61 ALLARAWSPGWSSADKALTTFINGPLLDYALNRQKADSATTSLLSPHLHFGELSVRKVFH 120
Query: 260 LVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVV 319
LVRI+QV WANEGN +G++SVNLFLKSIGLREYSRY+SFN P SHERPLL HL +F W V
Sbjct: 121 LVRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPSSHERPLLSHLNYFPWRV 180
Query: 320 DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD 379
D YFK+WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD
Sbjct: 181 DRDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD 240
Query: 380 TLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTE 439
TLLDADLE DALGWQYISG +PDGR DRIDNPQFEGYKFDP GEYVRRWLPELARLPT+
Sbjct: 241 TLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTQ 300
Query: 440 WIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGT 499
WIHHPW+AP++VLQ+AG+ELGSNYP PIV I AK RL +ALSEMWQ+EAA+RA++ENGT
Sbjct: 301 WIHHPWDAPQAVLQSAGVELGSNYPLPIVEISTAKERLQDALSEMWQREAAARASLENGT 360
Query: 500 EEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESS 559
EEGLG+S ++A + ++ ++ EP R+N AR +DQ+VPS++ + R + +
Sbjct: 361 EEGLGESLENANASLSENMDVDR--EPVRDNTGFAARSQDDQLVPSISNMVHRADVTYTL 418
Query: 560 LELRNSAEESRAEVPRN--------ANVNQEPRRDT--LNQGVLQTVHNNNAFQQFNAAI 609
+ +S +AEVP N A+ Q + T + +G+++ + N + A+
Sbjct: 419 SQAASSVRSEQAEVPSNRDSGTASAASSQQFLGQSTWSMTRGLIEDLPNVISHYPQMQAL 478
Query: 610 VLANAEDSTAESSSTSRRERD---GGVVPVWSPATSSYSEQLVGDENGIGTSSSYLQRHP 666
+ STA+SSS R D GG+VPVWS + S +S+Q + GT+ S LQ+
Sbjct: 479 DEQSESHSTADSSSILRVRDDTSSGGIVPVWSQSLSGHSQQFPEEGTVPGTAESSLQQQL 538
Query: 667 QSHQIMNCRRLSQTG 681
+H + R G
Sbjct: 539 HNHSMGTWRHGHNQG 553
>gi|410717572|gb|AFV79162.1| cryptochrome 1, partial [Pinus sylvestris]
Length = 572
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/555 (62%), Positives = 423/555 (76%), Gaps = 15/555 (2%)
Query: 140 VNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSN 199
+ND +G F+TF A+W KCL+MP+DP APLLPPKRI +G++S CPSD L EDESEK SN
Sbjct: 1 INDEEGHAFSTFQAYWNKCLNMPYDPSAPLLPPKRIVAGEVSNCPSDDLKLEDESEKASN 60
Query: 200 ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFH 259
ALLARAWSPGWS+ADKALTTFINGPL++Y+ NR+KADSATTS LSPHLHFGE+SVRKVFH
Sbjct: 61 ALLARAWSPGWSSADKALTTFINGPLLDYALNRQKADSATTSLLSPHLHFGELSVRKVFH 120
Query: 260 LVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVV 319
LVRI+QV WANEGN +G++SVNLFLKSIGLREYSRY+SFN P SHERPLL HL +F W V
Sbjct: 121 LVRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPSSHERPLLSHLNYFPWRV 180
Query: 320 DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD 379
D YFK+WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD
Sbjct: 181 DRDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD 240
Query: 380 TLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTE 439
TLLDADLE DALGWQYISG +PDGR DRIDNPQFEGYKFDP GEYVRRWLPELARLPT+
Sbjct: 241 TLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTQ 300
Query: 440 WIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGT 499
WIHHPW+AP++VLQ+AG+ELGSNYP PIV I AK RL +ALSEMWQ+EAA+RA++ENGT
Sbjct: 301 WIHHPWDAPQAVLQSAGVELGSNYPLPIVEISTAKERLQDALSEMWQREAAARASLENGT 360
Query: 500 EEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESS 559
EEGLG+S ++A + ++ ++ EP R+N AR +DQ+VPS++ + R + +
Sbjct: 361 EEGLGESLENANASLSENMDVDR--EPVRDNTGFAARSQDDQLVPSISNMVHRADVTYTL 418
Query: 560 LELRNSAEESRAEVPRN--------ANVNQEPRRDT--LNQGVLQTVHNNNAFQQFNAAI 609
+ +SA +AEVP N A+ Q + T + +G+++ + N + A+
Sbjct: 419 SQAASSARSEQAEVPSNRDSGTASAASSQQFLGQSTWSMPRGLIEDLPNVISHYPQMQAL 478
Query: 610 VLANAEDSTAESSSTSRRERD---GGVVPVWSPATSSYSEQLVGDENGIGTSSSYLQRHP 666
+ STA+SSS R D GG+VPVWS + S +S+Q + GT+ S LQ+
Sbjct: 479 DEQSESHSTADSSSILRVRDDTSSGGIVPVWSQSLSGHSQQFPEEGTVPGTAESSLQQQL 538
Query: 667 QSHQIMNCRRLSQTG 681
+H + R G
Sbjct: 539 HNHSMGTWRHGHNQG 553
>gi|410717428|gb|AFV79090.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717510|gb|AFV79131.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717514|gb|AFV79133.1| cryptochrome 1, partial [Pinus sylvestris]
Length = 572
Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/555 (62%), Positives = 422/555 (76%), Gaps = 15/555 (2%)
Query: 140 VNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSN 199
+ND +G F+TF A+W KCL+MP+DP APLLPPKRI +G++S CPSD L EDESEK SN
Sbjct: 1 INDEEGHAFSTFQAYWNKCLNMPYDPSAPLLPPKRIVAGEVSNCPSDDLKLEDESEKASN 60
Query: 200 ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFH 259
ALLARAWSPGWS+ADKALT FINGPL++Y+ NR+KADSATTS LSPHLHFGE+SVRKVFH
Sbjct: 61 ALLARAWSPGWSSADKALTAFINGPLLDYALNRQKADSATTSLLSPHLHFGELSVRKVFH 120
Query: 260 LVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVV 319
LVRI+QV WANEGN +G++SVNLFLKSIGLREYSRY+SFN P SHERPLL HL +F W V
Sbjct: 121 LVRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPSSHERPLLSHLNYFPWRV 180
Query: 320 DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD 379
D YFK+WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD
Sbjct: 181 DRDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD 240
Query: 380 TLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTE 439
TLLDADLE DALGWQYISG +PDGR DRIDNPQFEGYKFDP GEYVRRWLPELARLPT+
Sbjct: 241 TLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTQ 300
Query: 440 WIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGT 499
WIHHPW+AP++VLQ+AG+ELGSNYP PIV I AK RL +ALSEMWQ+EAA+RA++ENGT
Sbjct: 301 WIHHPWDAPQAVLQSAGVELGSNYPLPIVEISTAKERLQDALSEMWQREAAARASLENGT 360
Query: 500 EEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESS 559
EEGLG+S ++A + ++ ++ EP R+N AR +DQ+VPS++ + R + +
Sbjct: 361 EEGLGESLENANASLSENMDVDR--EPVRDNTGFAARSQDDQLVPSISNMVHRADVTYTL 418
Query: 560 LELRNSAEESRAEVPRN--------ANVNQEPRRDT--LNQGVLQTVHNNNAFQQFNAAI 609
+ +SA +AEVP N A+ Q + T + +G+++ + N + A+
Sbjct: 419 SQAASSARSEQAEVPSNRDSGTASAASSQQFLGQSTWSMTRGLIEDLPNVISHYPQMQAL 478
Query: 610 VLANAEDSTAESSSTSRRERD---GGVVPVWSPATSSYSEQLVGDENGIGTSSSYLQRHP 666
+ STA+SSS R D GG+VPVWS + S +S+Q + GT+ S LQ+
Sbjct: 479 DEQSESHSTADSSSILRMRDDTSSGGIVPVWSQSLSGHSQQFPEEGTVPGTAESSLQQQL 538
Query: 667 QSHQIMNCRRLSQTG 681
+H + R G
Sbjct: 539 HNHSMGTWRHGHNQG 553
>gi|410718356|gb|AFV79555.1| cryptochrome 1, partial [Pinus pinaster]
Length = 572
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/555 (62%), Positives = 419/555 (75%), Gaps = 15/555 (2%)
Query: 140 VNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSN 199
VND +G F+TF A+W KCL+MP+DP APLLPPKRI +G++S CPSD L EDESEK SN
Sbjct: 1 VNDEEGHAFSTFQAYWNKCLNMPYDPSAPLLPPKRIVAGEVSNCPSDDLKLEDESEKASN 60
Query: 200 ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFH 259
ALLARAWSPGWS+ADKALT FINGPL++Y+ NR+KADSATTS LSPHLHFGE+SVRKVFH
Sbjct: 61 ALLARAWSPGWSSADKALTAFINGPLLDYALNRQKADSATTSLLSPHLHFGELSVRKVFH 120
Query: 260 LVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVV 319
LVRI+Q+ WANEGN +G++SVNLFLKSIGLREYSRY+SFN P SHERPLL HL +F W V
Sbjct: 121 LVRIRQILWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPCSHERPLLSHLNYFPWRV 180
Query: 320 DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD 379
D YFK+WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD
Sbjct: 181 DRDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD 240
Query: 380 TLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTE 439
TLLDADLE DALGWQYISG +PDGR DRIDNPQFEGYKFDP GEYVRRWLPELARLPT+
Sbjct: 241 TLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTQ 300
Query: 440 WIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGT 499
WIHHPW+AP++VLQ+AG+ELGSNYP PIV I AK RL +ALSEMWQ+EAA+RA++ENGT
Sbjct: 301 WIHHPWDAPQAVLQSAGVELGSNYPLPIVEISTAKERLQDALSEMWQREAAARASLENGT 360
Query: 500 EEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESS 559
EEGLG+S ++A + ++ ++ EP R+N AR +DQ+VPS++ + R + +
Sbjct: 361 EEGLGESLENANASLSENMDVDR--EPVRDNTGFAARSQDDQLVPSISNMVHRADVTYTL 418
Query: 560 LELRNSAEESRAEVPRNANVNQEPRRD----------TLNQGVLQTVHNNNAFQQFNAAI 609
+ +SA +AEVP N + ++ +G+++ + N + A+
Sbjct: 419 SQAASSARSEQAEVPSNRDSGAASAASSQQFLGQSTWSMTRGLIEDLPNVISHYPQTQAL 478
Query: 610 VLANAEDSTAESSSTSRRERD---GGVVPVWSPATSSYSEQLVGDENGIGTSSSYLQRHP 666
+ STA+SSS R D GG+VPVWS + S +S+Q + GT+ S LQ+
Sbjct: 479 DEQSESHSTADSSSILRMRDDTSSGGIVPVWSQSLSGHSQQFPEEGAVPGTAESSLQQQL 538
Query: 667 QSHQIMNCRRLSQTG 681
+H + R G
Sbjct: 539 HNHSMGTWRHGHNQG 553
>gi|410717430|gb|AFV79091.1| cryptochrome 1, partial [Pinus sylvestris]
gi|410717454|gb|AFV79103.1| cryptochrome 1, partial [Pinus sylvestris]
Length = 572
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/555 (62%), Positives = 422/555 (76%), Gaps = 15/555 (2%)
Query: 140 VNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSN 199
VND +G F+TF A+W KCL+MP+DP APLLPPKRI +G++S CPSD L EDESEK SN
Sbjct: 1 VNDEEGHAFSTFQAYWNKCLNMPYDPSAPLLPPKRIVAGEVSNCPSDDLKLEDESEKASN 60
Query: 200 ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFH 259
ALLARAWSPGWS+ADKALT FINGPL++Y+ NR+KADSATTS LSPHLHFGE+SVRKVFH
Sbjct: 61 ALLARAWSPGWSSADKALTAFINGPLLDYALNRQKADSATTSLLSPHLHFGELSVRKVFH 120
Query: 260 LVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVV 319
+VRI+QV WANEGN +G++SVNLFLKSIGLREYSRY+SFN P SHERPLL HL +F W V
Sbjct: 121 IVRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPSSHERPLLSHLNYFPWRV 180
Query: 320 DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD 379
D YFK+WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD
Sbjct: 181 DRDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD 240
Query: 380 TLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTE 439
TLLDADLE DALGWQYISG +PDGR DRIDNPQFEGYKFDP GEYVRRWLPELARLPT+
Sbjct: 241 TLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTQ 300
Query: 440 WIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGT 499
WIHHPW+AP++VLQ+AG+ELGSNYP PIV I AK RL +ALSEMWQ+EAA+RA++ENGT
Sbjct: 301 WIHHPWDAPQAVLQSAGVELGSNYPLPIVEISTAKERLQDALSEMWQREAAARASLENGT 360
Query: 500 EEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESS 559
EEGLG+S ++A + ++ ++ EP R+N AR +DQ+VPS++ + R + +
Sbjct: 361 EEGLGESLENANASLSENMDVDR--EPVRDNTGFAARSQDDQLVPSISNMVHRADVTYTL 418
Query: 560 LELRNSAEESRAEVPRN--------ANVNQEPRRDT--LNQGVLQTVHNNNAFQQFNAAI 609
+ +SA +AEVP N A+ Q + T + +G+++ + N + A+
Sbjct: 419 SQAASSARSEQAEVPSNRDSGTASAASSQQFLGQSTWSMTRGLIEDLPNVISHYPQMQAL 478
Query: 610 VLANAEDSTAESSSTSRRERD---GGVVPVWSPATSSYSEQLVGDENGIGTSSSYLQRHP 666
+ STA+SSS R D GG+VPVWS + S +S+Q + GT+ S LQ+
Sbjct: 479 DEQSESHSTADSSSILRMRDDTSSGGIVPVWSQSLSGHSQQFPEEGTVPGTAESSLQQQL 538
Query: 667 QSHQIMNCRRLSQTG 681
+H + R G
Sbjct: 539 HNHSMGTWRHGHNQG 553
>gi|410717586|gb|AFV79169.1| cryptochrome 1, partial [Pinus sylvestris]
Length = 572
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/555 (62%), Positives = 422/555 (76%), Gaps = 15/555 (2%)
Query: 140 VNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSN 199
+ND +G F+TF A+W KCL+MP+DP APLLPPKRI +G++S CPSD L EDESEK SN
Sbjct: 1 INDEEGHAFSTFQAYWNKCLNMPYDPSAPLLPPKRIVAGEVSNCPSDDLKLEDESEKASN 60
Query: 200 ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFH 259
ALLARAWSPGWS+ADKALTTFINGPL++Y+ NR+KADSATTS LSPHLHFGE+SVRKV H
Sbjct: 61 ALLARAWSPGWSSADKALTTFINGPLLDYALNRQKADSATTSLLSPHLHFGELSVRKVXH 120
Query: 260 LVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVV 319
LVRI+QV WANEGN +G++SVNLFLKSIGLREYSRY+SFN P SHERPLL HL +F W V
Sbjct: 121 LVRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPSSHERPLLSHLNYFPWRV 180
Query: 320 DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD 379
D YFK+WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD
Sbjct: 181 DRDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD 240
Query: 380 TLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTE 439
TLLDADLE DALGWQYISG +PDGR DRIDNPQFEGYKFDP GEYVRRWLPELARLPT+
Sbjct: 241 TLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTQ 300
Query: 440 WIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGT 499
WIHHPW+AP++VLQ+AG+ELGSNYP PIV I AK RL +ALSEMWQ+EAA+RA++ENGT
Sbjct: 301 WIHHPWDAPQAVLQSAGVELGSNYPLPIVEISTAKERLQDALSEMWQREAAARASLENGT 360
Query: 500 EEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESS 559
EEGLG+S ++A + ++ ++ EP R+N AR +DQ+VPS++ + R + +
Sbjct: 361 EEGLGESLENANASLSENMDVDR--EPVRDNTGFAARSQDDQLVPSISNMVHRADVTYTL 418
Query: 560 LELRNSAEESRAEVPRN--------ANVNQEPRRDT--LNQGVLQTVHNNNAFQQFNAAI 609
+ +SA +AEVP N A+ Q + T + +G+++ + N + A+
Sbjct: 419 SQAASSARSEQAEVPSNRDSGTASAASSQQFLGQSTWSMTRGLIEDLPNVISHYPQMQAL 478
Query: 610 VLANAEDSTAESSSTSRRERD---GGVVPVWSPATSSYSEQLVGDENGIGTSSSYLQRHP 666
+ STA+SSS R D GG+VPVWS + S +S+Q + GT+ S LQ+
Sbjct: 479 DEQSESHSTADSSSILRVRDDTSSGGIVPVWSQSLSGHSQQFPEEGTVPGTAESSLQQQL 538
Query: 667 QSHQIMNCRRLSQTG 681
+H + R G
Sbjct: 539 HNHSMGTWRHGHNQG 553
>gi|410717580|gb|AFV79166.1| cryptochrome 1, partial [Pinus sylvestris]
Length = 572
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/555 (62%), Positives = 421/555 (75%), Gaps = 15/555 (2%)
Query: 140 VNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSN 199
+ND +G F+TF A+W KCL+MP+DP APLLPPKRI +G++S CPSD L EDESEK SN
Sbjct: 1 INDEEGHAFSTFQAYWNKCLNMPYDPSAPLLPPKRIVAGEVSNCPSDDLKLEDESEKASN 60
Query: 200 ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFH 259
ALLARAWSPGWS+ADKALT FINGPL++Y+ NR+KADSATTS LSPHLHFGE+SVRKVFH
Sbjct: 61 ALLARAWSPGWSSADKALTAFINGPLLDYALNRQKADSATTSLLSPHLHFGELSVRKVFH 120
Query: 260 LVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVV 319
LVRI+QV WANEGN +G++SVNLFLKSIGLREYSRY+SFN P SHERPLL HL +F W V
Sbjct: 121 LVRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPSSHERPLLSHLNYFPWRV 180
Query: 320 DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD 379
D YFK+WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD
Sbjct: 181 DRDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD 240
Query: 380 TLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTE 439
TLLDADLE DALGWQYISG +PDGR DRIDNPQFEGYKFDP GEYVRRWLPELARLPT+
Sbjct: 241 TLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTQ 300
Query: 440 WIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGT 499
WIHHPW+AP++VLQ+AG+ELGSNYP PIV I AK RL +ALSEMWQ+EAA+RA++ENGT
Sbjct: 301 WIHHPWDAPQAVLQSAGVELGSNYPLPIVEISTAKERLQDALSEMWQREAAARASLENGT 360
Query: 500 EEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESS 559
EEGLG+S ++A + ++ ++ EP R+N R +DQ+VPS++ + R + +
Sbjct: 361 EEGLGESLENANASLSENMDVDR--EPVRDNTGFAVRSQDDQLVPSISNMVHRADVTYTL 418
Query: 560 LELRNSAEESRAEVPRN--------ANVNQEPRRDT--LNQGVLQTVHNNNAFQQFNAAI 609
+ +SA +AEVP N A+ Q + T + +G+++ + N + A+
Sbjct: 419 SQAASSARSEQAEVPSNRDSGTASAASSQQFLGQSTWSMTRGLIEDLPNVISHYPQMQAL 478
Query: 610 VLANAEDSTAESSSTSRRERD---GGVVPVWSPATSSYSEQLVGDENGIGTSSSYLQRHP 666
+ STA+SSS R D GG+VPVWS + S +S+Q + GT+ S LQ+
Sbjct: 479 DEQSESHSTADSSSILRVRDDTSSGGIVPVWSQSLSGHSQQFPEEGTVPGTAESSLQQQL 538
Query: 667 QSHQIMNCRRLSQTG 681
+H + R G
Sbjct: 539 HNHSMGTWRHGHNQG 553
>gi|410717540|gb|AFV79146.1| cryptochrome 1, partial [Pinus sylvestris]
Length = 572
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/555 (62%), Positives = 420/555 (75%), Gaps = 15/555 (2%)
Query: 140 VNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSN 199
+ND +G F+TF A+W KCL+MP+DP APLLPPKRI +G++S CPSD L EDESEK SN
Sbjct: 1 INDEEGHAFSTFQAYWNKCLNMPYDPSAPLLPPKRIVAGEVSNCPSDDLKLEDESEKASN 60
Query: 200 ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFH 259
ALLARAWSPGWS+ADKALTTFINGPL+ NR+KADSATTS LSPHLHFGE+SVRKVFH
Sbjct: 61 ALLARAWSPGWSSADKALTTFINGPLLXXXLNRQKADSATTSLLSPHLHFGELSVRKVFH 120
Query: 260 LVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVV 319
LVRI+QV WANEGN +G++SVNLFLKSIGLREYSRY+SFN P SHERPLL HL +F W V
Sbjct: 121 LVRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPSSHERPLLSHLNYFPWRV 180
Query: 320 DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD 379
D YFK+WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD
Sbjct: 181 DRDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD 240
Query: 380 TLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTE 439
TLLDADLE DALGWQYISG +PDGR DRIDNPQFEGYKFDP GEYVRRWLPELARLPT+
Sbjct: 241 TLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTQ 300
Query: 440 WIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGT 499
WIHHPW+AP++VLQ+AG+ELGSNYP PIV I AK RL +ALSEMWQ+EAA+RA++ENGT
Sbjct: 301 WIHHPWDAPQAVLQSAGVELGSNYPLPIVEISTAKERLQDALSEMWQREAAARASLENGT 360
Query: 500 EEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESS 559
EEGLG+S ++A + ++ ++ EP R+N AR +DQ+VPS++ + R + +
Sbjct: 361 EEGLGESLENANASLSENMDVDR--EPVRDNTGFAARSQDDQLVPSISNMVHRADVTYTL 418
Query: 560 LELRNSAEESRAEVPRN--------ANVNQEPRRDT--LNQGVLQTVHNNNAFQQFNAAI 609
+ +SA +AEVP N A+ Q + T + +G+++ + N + A+
Sbjct: 419 SQAASSARSEQAEVPSNRDSGTASAASSQQFLGQSTWSMTRGLIEDLPNVISHYPQMQAL 478
Query: 610 VLANAEDSTAESSSTSRRERD---GGVVPVWSPATSSYSEQLVGDENGIGTSSSYLQRHP 666
+ STA+SSS R D GG+VPVWS + S +S+Q + GT+ S LQ+
Sbjct: 479 DEQSESHSTADSSSILRVRDDTSSGGIVPVWSQSLSGHSQQFPEEGTVPGTAESSLQQQL 538
Query: 667 QSHQIMNCRRLSQTG 681
+H + R G
Sbjct: 539 HNHSMGTWRHGHNQG 553
>gi|410717610|gb|AFV79181.1| cryptochrome 1, partial [Pinus sylvestris]
Length = 572
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/555 (62%), Positives = 421/555 (75%), Gaps = 15/555 (2%)
Query: 140 VNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSN 199
+ND +G F+ A+W KCL+MP+DP APLLPPKRI +G++S CPSD L EDESEK SN
Sbjct: 1 INDEEGHAFSXXQAYWNKCLNMPYDPSAPLLPPKRIVAGEVSNCPSDDLKLEDESEKASN 60
Query: 200 ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFH 259
ALLARAWSPGWS+ADKALTTFINGPL++Y+ NR+KADSATTS LSPHLHFGE+SVRKVFH
Sbjct: 61 ALLARAWSPGWSSADKALTTFINGPLLDYALNRQKADSATTSLLSPHLHFGELSVRKVFH 120
Query: 260 LVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVV 319
LVRI+QV WANEGN +G++SVNLFLKSIGLREYSRY+SFN P SHERPLL HL +F W V
Sbjct: 121 LVRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPSSHERPLLSHLNYFPWRV 180
Query: 320 DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD 379
D YFK+WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD
Sbjct: 181 DRDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD 240
Query: 380 TLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTE 439
TLLDADLE DALGWQYISG +PDGR DRIDNPQFEGYKFDP GEYVRRWLPELARLPT+
Sbjct: 241 TLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTQ 300
Query: 440 WIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGT 499
WIHHPW+AP++VLQ+AG+ELGSNYP PIV I AK RL +ALSEMWQ+EAA+RA++ENGT
Sbjct: 301 WIHHPWDAPQAVLQSAGVELGSNYPLPIVEISTAKERLQDALSEMWQREAAARASLENGT 360
Query: 500 EEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESS 559
EEGLG+S ++A + ++ ++ EP R+N AR +DQ+VPS++ + R + +
Sbjct: 361 EEGLGESLENANASLSENMDVDR--EPVRDNTGFAARSQDDQLVPSISNMVHRADVTYTL 418
Query: 560 LELRNSAEESRAEVPRN--------ANVNQEPRRDT--LNQGVLQTVHNNNAFQQFNAAI 609
+ +SA +AEVP N A+ Q + T + +G+++ + N + A+
Sbjct: 419 SQAASSARSEQAEVPSNRDSGTASAASSQQFLGQSTWSMTRGLIEDLPNVISHYPQMQAL 478
Query: 610 VLANAEDSTAESSSTSRRERD---GGVVPVWSPATSSYSEQLVGDENGIGTSSSYLQRHP 666
+ STA+SSS R D GG+VPVWS + S +S+Q + GT+ S LQ+
Sbjct: 479 DEQSESHSTADSSSILRVRDDTSSGGIVPVWSQSLSGHSQQFPEEGTVPGTAESSLQQQL 538
Query: 667 QSHQIMNCRRLSQTG 681
+H + R G
Sbjct: 539 HNHSMGTWRHGHNQG 553
>gi|78217443|gb|ABB36797.1| cryptochrome 2 [Nicotiana sylvestris]
Length = 641
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/547 (58%), Positives = 413/547 (75%), Gaps = 9/547 (1%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
M +IVWFRRDLR+EDNPALAA R G+V VFIW+P+EEG +YPGRVSRWWLK SL
Sbjct: 1 MESNSKTIVWFRRDLRIEDNPALAAAARNGSVFPVFIWSPKEEGQFYPGRVSRWWLKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
HL+ SL+SLG LV ++ ++S+LL+ ++A GAT++ +NHLYDP+SLVRDH K+ L
Sbjct: 61 IHLEQSLKSLGAELVLIKAQSTLSALLDCIEAVGATKVVYNHLYDPVSLVRDHNIKQKLG 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-NSGD 179
GI+V+S+N DLL EPW+V D G+ F TF A+WEK L + +P + L P K I +G
Sbjct: 121 ELGISVQSYNGDLLNEPWEVYDDDGKVFTTFDAYWEKSLRLQKEPVSHLPPWKLIPAAGS 180
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+ C + L E+ESEK SNALL + W+PGWSNADKALT F+ L+ YSK+R + +
Sbjct: 181 VKMCSVEELGLENESEKSSNALLGKGWAPGWSNADKALTEFVENQLLAYSKDRLRVGGNS 240
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP+LHFGEVSVRKVF+ VR+KQ+ W EGN GDES +L+L++IGLREYSRY+ FN
Sbjct: 241 TSLLSPYLHFGEVSVRKVFNSVRLKQILWTKEGNSVGDESASLYLRAIGLREYSRYICFN 300
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P++HER LL +LKFF W D+ FKAWRQGRTGYPLVDAGMRELWATGW+H++IRV+V+
Sbjct: 301 FPFTHERSLLNNLKFFPWNADQARFKAWRQGRTGYPLVDAGMRELWATGWIHNKIRVIVA 360
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SFFVK L LPW+WGMKYFWDTLLDADLESD +GWQYISG++PDG +R+DNP+ +G+ +
Sbjct: 361 SFFVKFLLLPWQWGMKYFWDTLLDADLESDIIGWQYISGSLPDGHELERLDNPEVQGFNY 420
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP GEYVR WLPELAR+P EWIHHPW+AP +VL+AAG+ELG NYP PI+ +D A+ RL +
Sbjct: 421 DPEGEYVRHWLPELARMPAEWIHHPWDAPLTVLKAAGVELGMNYPNPIIDVDVARDRLMQ 480
Query: 480 ALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYE 539
A+ M ++EAA+ AA NGT E + D+S++ + P + ++P P+ ++
Sbjct: 481 AIFIMREKEAAANAADANGTNEVVFDNSENVGDSVNPKVVKGKVPCPSSSSY-------- 532
Query: 540 DQMVPSM 546
DQ VPSM
Sbjct: 533 DQRVPSM 539
>gi|350536405|ref|NP_001234245.1| cryptochrome 2 [Solanum lycopersicum]
gi|8101444|gb|AAF72556.1|AF130425_1 cryptochrome 2 [Solanum lycopersicum]
gi|8101446|gb|AAF72557.1|AF130426_1 cryptochrome 2 [Solanum lycopersicum]
Length = 635
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/583 (56%), Positives = 422/583 (72%), Gaps = 19/583 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IVWFRRDLR+EDNPALAA R G+V+ VFIW P+EEG +YPGRVSRWWLK SL HL S
Sbjct: 7 TIVWFRRDLRIEDNPALAAAARNGSVLPVFIWCPKEEGQFYPGRVSRWWLKQSLIHLKQS 66
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L+SLG LV ++ ++S+L E V A GAT++ +NHLYDP+SLVRDH K+ L GI+V
Sbjct: 67 LKSLGAELVLMKAQSTLSALTECVDAVGATKVVYNHLYDPVSLVRDHNIKQKLGDLGISV 126
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRIN--SGDMSRCP 184
+S+N DLL EPW+V D G+ F TF A+WEK LS+ +P LPP R+ +G + C
Sbjct: 127 QSYNGDLLNEPWEVYDDDGKVFTTFDAYWEKSLSIQNEP-VSQLPPWRLTQAAGSVKMCS 185
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
+ L E+ESEK SNALL + W+PGWSNADKALT F+ L+ YSK+R + +TS LS
Sbjct: 186 VEELGLENESEKSSNALLGKGWAPGWSNADKALTEFVESNLLAYSKDRLRVGGNSTSLLS 245
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
P+LHFGEVSVRKVF+ VR+KQ+ W EGN G +S ++L++IGLREYSRY+ FN P++H
Sbjct: 246 PYLHFGEVSVRKVFNSVRLKQILWTKEGNSVGKDSATIYLRAIGLREYSRYICFNFPFTH 305
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
ER LL +L+FF W D+ +FKAWRQGRTGYPLVDAGMRELWATGW+H++IRV+VSSFFVK
Sbjct: 306 ERSLLNNLRFFPWNADQAHFKAWRQGRTGYPLVDAGMRELWATGWVHNKIRVIVSSFFVK 365
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L LPW+WGMKYFWDTLLDADLESD +GWQYISG++PDG +R+DNP+ +G+ +DP GE
Sbjct: 366 FLLLPWQWGMKYFWDTLLDADLESDIIGWQYISGSLPDGHELERLDNPEVQGFNYDPEGE 425
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
YVR WLPELAR+P EWIHHPW+AP +VL+AAG+ELG NYP PI+ +D A+ RL +A+ M
Sbjct: 426 YVRHWLPELARMPAEWIHHPWDAPLNVLKAAGVELGMNYPNPIIDVDVARDRLMQAIIIM 485
Query: 485 WQQEAASRAAIENGTEEGLGDSS----DSAPIAFPPDIQMEEIPEPARNNLPTTARRYED 540
++EAA + NGT E + D+S DSA I P D + + P + D
Sbjct: 486 REKEAAVNTSHANGTVEVVFDNSENVGDSASI--PKD-------DVVKGKEPCPSSSSYD 536
Query: 541 QMVPSMT---TSLVRVEEEESSLELRNSAEESRAEVPRNANVN 580
Q VPSM T R + EE + +L ++ + E + +NV+
Sbjct: 537 QRVPSMQNVGTYRKRPKPEEETKKLNDNKLSYKNERIKMSNVD 579
>gi|410717524|gb|AFV79138.1| cryptochrome 1, partial [Pinus sylvestris]
Length = 572
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/555 (62%), Positives = 419/555 (75%), Gaps = 15/555 (2%)
Query: 140 VNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSN 199
+ND +G F+TF A+W KCL+MP+DP APLLPPKRI +G++S CPSD L EDESEK SN
Sbjct: 1 INDEEGHAFSTFQAYWNKCLNMPYDPSAPLLPPKRIVAGEVSNCPSDDLKLEDESEKASN 60
Query: 200 ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFH 259
ALLARAWSPGWS+ADKALTTFINGPL++Y+ NR+KADSATTS LSPHLH SVRKVFH
Sbjct: 61 ALLARAWSPGWSSADKALTTFINGPLLDYALNRQKADSATTSLLSPHLHXXXXSVRKVFH 120
Query: 260 LVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVV 319
LVRI+QV WANEGN +G++SVNLFLKSIGLREYSRY+SFN P SHERPLL HL +F W V
Sbjct: 121 LVRIRQVLWANEGNTSGEQSVNLFLKSIGLREYSRYLSFNFPSSHERPLLSHLNYFPWRV 180
Query: 320 DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD 379
D YFK+WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD
Sbjct: 181 DRDYFKSWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD 240
Query: 380 TLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTE 439
TLLDADLE DALGWQYISG +PDGR DRIDNPQFEGYKFDP GEYVRRWLPELARLPT+
Sbjct: 241 TLLDADLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTQ 300
Query: 440 WIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGT 499
WIHHPW+AP++VLQ+AG+ELGSNYP PIV I AK RL +ALSEMWQ+EAA+RA++ENGT
Sbjct: 301 WIHHPWDAPQAVLQSAGVELGSNYPLPIVEISTAKERLQDALSEMWQREAAARASLENGT 360
Query: 500 EEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESS 559
EEGLG+S ++A + ++ ++ EP R+N AR +DQ+VPS++ + R + +
Sbjct: 361 EEGLGESLENANASLSENMDVDR--EPVRDNTGFAARSQDDQLVPSISNMVHRADVTYTL 418
Query: 560 LELRNSAEESRAEVPRN--------ANVNQEPRRDT--LNQGVLQTVHNNNAFQQFNAAI 609
+ +SA +AEVP N A+ Q + T + +G+++ + N + A+
Sbjct: 419 SQAASSARSEQAEVPSNRDSGTASAASSQQFLGQSTWSMTRGLIEDLPNVISHYPQMQAL 478
Query: 610 VLANAEDSTAESSSTSRRERD---GGVVPVWSPATSSYSEQLVGDENGIGTSSSYLQRHP 666
+ STA+SSS R D GG+VPVWS + S +S+Q + GT+ S LQ+
Sbjct: 479 DEQSESHSTADSSSILRVRDDTSSGGIVPVWSQSLSGHSQQFPEEGTVPGTAESSLQQQL 538
Query: 667 QSHQIMNCRRLSQTG 681
+H + R G
Sbjct: 539 HNHSMGTWRHGHNQG 553
>gi|255581443|ref|XP_002531529.1| DNA photolyase, putative [Ricinus communis]
gi|223528846|gb|EEF30848.1| DNA photolyase, putative [Ricinus communis]
Length = 640
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/541 (58%), Positives = 402/541 (74%), Gaps = 12/541 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IVWFRRDLR+EDNPALAA R G ++ VFIW P+EEG +YPGRVSRWWLK SL+HL S
Sbjct: 6 TIVWFRRDLRIEDNPALAAAARDGCILPVFIWCPQEEGQFYPGRVSRWWLKQSLAHLGHS 65
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L+SLG L+ ++ ++++LL+ V GAT++ FN LYDP+SLVRDH KE L GI++
Sbjct: 66 LKSLGAELLLIKTHSTLAALLDCVNVIGATKVVFNRLYDPVSLVRDHNIKEKLVELGISI 125
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGD-MSRCPS 185
+S+N DLLYEPW++ D G F TF +W+KCL M +P + L P + + + + ++ C
Sbjct: 126 QSYNGDLLYEPWEIYDESGHAFMTFDQYWDKCLHMQMEPVSHLPPWRLVPAAETVNSCSV 185
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
+ L EDE+EK SN+LL RAWSPGWSNADKAL F+ L+ YSK R + +TS LSP
Sbjct: 186 EELGLEDEAEKSSNSLLGRAWSPGWSNADKALAEFVEQHLVNYSKKRLEVGGNSTSLLSP 245
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
+LHFGE+SVRKVFH V++KQ+ WA E N G ESV LFLKSIGLREYSRY+ FN PY+HE
Sbjct: 246 YLHFGELSVRKVFHCVQMKQLLWAKEENSVGRESVTLFLKSIGLREYSRYLCFNFPYTHE 305
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
R L +L+ F W ++ +FKAWRQGRTGYPLVDAGMRELWATGW+H++IRV+VSSF VK
Sbjct: 306 RSFLSNLRLFPWNANQAHFKAWRQGRTGYPLVDAGMRELWATGWIHNKIRVIVSSFAVKA 365
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
L LPWRWGMKYFWDTLLDAD+ESD LGWQYISG +PDG +R+D+P+ +G KFD +GEY
Sbjct: 366 LLLPWRWGMKYFWDTLLDADMESDILGWQYISGGLPDGHELERLDSPEIQGSKFDADGEY 425
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMW 485
VR+WLPELAR+PTEWIHHPW+AP +VL+AAG+ELG NYP PIV +D A+ RL EA+ MW
Sbjct: 426 VRQWLPELARMPTEWIHHPWDAPLAVLRAAGVELGQNYPKPIVELDLARERLTEAIFRMW 485
Query: 486 QQEAASRAAIENGTEEGLGDSSD-SAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVP 544
E A+RA+ T E + D++D + +A P + E+ P P ++ DQ VP
Sbjct: 486 --ETAARASTSGETNEVVVDNTDGTGNLAIPNVVLKEKTPCPTISS--------NDQKVP 535
Query: 545 S 545
+
Sbjct: 536 T 536
>gi|357439517|ref|XP_003590036.1| Cryptochrome 2B [Medicago truncatula]
gi|355479084|gb|AES60287.1| Cryptochrome 2B [Medicago truncatula]
Length = 600
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/513 (60%), Positives = 384/513 (74%), Gaps = 2/513 (0%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IVWFRRDLR+EDNPALAA R G+V VFI P+EEG +YPGRVSRWWLK SL HLD S
Sbjct: 4 TIVWFRRDLRIEDNPALAAAARDGSVFPVFICCPKEEGQFYPGRVSRWWLKQSLYHLDQS 63
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L+SLG LV ++ ++ +LLE V A A ++ FNHLYDP+SLVRDH KE L GI+V
Sbjct: 64 LKSLGAGLVMIKTDSTLKALLECVNAVQAKKVVFNHLYDPVSLVRDHNIKEKLVELGISV 123
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS-GDMSRCPS 185
+S+N DLL+EPWD+ D G F TF FW +CL M + + P + I + G + +
Sbjct: 124 QSYNGDLLHEPWDIYDESGHAFTTFDPFWSRCLQMQMKTYSTIPPCQLIPAQGKVEKHSI 183
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
+ L EDE E SNALL+RAWSPGWS +DKALT F+ LI YSKNR +TS LSP
Sbjct: 184 EQLGLEDELETSSNALLSRAWSPGWSKSDKALTEFVENHLIHYSKNRLNLGVDSTSLLSP 243
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
++HFGE+SVRKVF LVR KQ+ W NEGN G+ES FL++IG REYSRY+ F+ P++ E
Sbjct: 244 YIHFGELSVRKVFQLVRTKQILWKNEGNIVGEESATFFLRAIGFREYSRYLCFSFPFTVE 303
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
RPLLG+LKFF W D FKAWR GRTGYPLVDAGMRELWATGW+H+++RV+VSSF VK+
Sbjct: 304 RPLLGNLKFFPWNTDPSKFKAWRLGRTGYPLVDAGMRELWATGWIHNKMRVIVSSFAVKM 363
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
L +PW+WGMKYFWDTLLDADLESD LGWQYISG++PDG +R+D+P+ +G K+DP GEY
Sbjct: 364 LLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELERLDDPEIQGTKYDPEGEY 423
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMW 485
+R+WLPELAR+PTEWIHHPWNAP +VL+A+GIELG NYP PI+ ID A+ +L +A+ +MW
Sbjct: 424 IRQWLPELARIPTEWIHHPWNAPLTVLKASGIELGQNYPKPIIEIDLAREQLTQAIFKMW 483
Query: 486 QQEAASRAAIENGTEEGLGDSSD-SAPIAFPPD 517
+ EAAS+A+ E + DS + S P F D
Sbjct: 484 EDEAASKASTSENKHEVVDDSENLSIPKVFLKD 516
>gi|359806729|ref|NP_001241551.1| cryptochrome-2-like [Glycine max]
gi|261876463|dbj|BAI47557.1| cryptochrome2 [Glycine max]
Length = 600
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/516 (60%), Positives = 386/516 (74%), Gaps = 7/516 (1%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGV--RAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
G +IVWFRRDLR+EDNPALAA + G+V V+IW P+EEG +YPGRVSRWWLK SL
Sbjct: 2 GMNKTIVWFRRDLRIEDNPALAAAAAAKDGSVFPVYIWCPKEEGQFYPGRVSRWWLKQSL 61
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HLD SL+SLG L+ ++ ++ +LLE V A AT++ FNHLYDP+SLVRDH KE L
Sbjct: 62 AHLDKSLKSLGAELMLIKTDSTLEALLECVNAIQATKVVFNHLYDPVSLVRDHNIKEKLV 121
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-NSGD 179
GI+V+S+N DLL+EPW + D G F TF FW +CL M + L+PP+ I G
Sbjct: 122 ELGISVKSYNGDLLFEPWSIYDETGHAFTTFDPFWNRCLHMQMKAFS-LIPPQLILAEGK 180
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+ +C + L EDESEK SNALL RAW PGW+ DKALT F+ L+ YSKNR K +
Sbjct: 181 VGKCSIEQLGLEDESEKSSNALLGRAWYPGWNKTDKALTEFVEQHLLHYSKNRLKVGGDS 240
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP++HFGE+SVRKVF L R KQ+ WANEGN AG+ES +FL++IGLREYSRY+ FN
Sbjct: 241 TSLLSPYIHFGELSVRKVFQLARTKQILWANEGNSAGEESATVFLRAIGLREYSRYLCFN 300
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P + E+PLLG+L FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H++IRV+VS
Sbjct: 301 FPSTIEKPLLGNLAFFPWKTDPANFKAWRQGRTGYPLVDAGMRELWATGWIHNKIRVIVS 360
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK+L +PWRWGMKYFWDTLLDADLESD LGWQYISG +PDG +R+D+P G KF
Sbjct: 361 SFAVKMLLIPWRWGMKYFWDTLLDADLESDILGWQYISGCLPDGHKLERLDDPAIHGAKF 420
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP GEYVR+WLPELAR+P EWIHHPWNAP +VL+A+G+ELG NYP PI+ ID A+ +L E
Sbjct: 421 DPEGEYVRQWLPELARMPAEWIHHPWNAPLTVLRASGVELGQNYPKPIIDIDQAREQLTE 480
Query: 480 ALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFP 515
A+ +MW+ EAAS+ + G+EE +S +A P
Sbjct: 481 AIFKMWENEAASKGS---GSEERHEVVDESESLAIP 513
>gi|6594298|dbj|BAA88424.1| blue light photoreceptor [Adiantum capillus-veneris]
gi|6594302|dbj|BAA88426.1| blue light photoreceptor [Adiantum capillus-veneris]
Length = 487
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/482 (63%), Positives = 374/482 (77%), Gaps = 4/482 (0%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
+IVW RRDLR++DNPAL + G AV+ VF+W PEEEG + GR+SRWWLK SL L
Sbjct: 5 TTIVWLRRDLRLDDNPALKEASKIGNAVVPVFVWVPEEEGQFQQGRMSRWWLKQSLKQLA 64
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
SL SLG+ L+ +RS+ S+ +L+++V T A+Q+FFNHLYDP+SLVRD R KE L GI
Sbjct: 65 QSLDSLGSPLIIRRSSSSLQALMDLVIHTQASQVFFNHLYDPISLVRDQRVKEGLLQTGI 124
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKR---INSGDMS 181
VR+FNADLLYEPW VND G+ F TF FW+KCL+MP +P APLLPP R +G +
Sbjct: 125 HVRTFNADLLYEPWQVNDPSGKAFTTFNEFWDKCLNMPEEPHAPLLPPTRSLLAFAGHLP 184
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
C + L E+ SEK SNALLAR+W+PGW NA+KAL F+ L++Y+ N+ D +TTS
Sbjct: 185 GCTVEDLELENNSEKDSNALLARSWTPGWINAEKALEAFVERHLLQYAANQHMVDGSTTS 244
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
FLSPHLHFGE+SVRKVF+ VRIK V W EG G++SVNLFL+SIGLR+YSRY+ FN P
Sbjct: 245 FLSPHLHFGELSVRKVFYNVRIKAVQWTKEGKPDGEQSVNLFLRSIGLRDYSRYICFNFP 304
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
++HER +L + + F W VDEG FKAWRQGRTGYPLVDAGMR++WATGWLH+RIRV+VSSF
Sbjct: 305 FTHERLILQNRRPFPWRVDEGLFKAWRQGRTGYPLVDAGMRQIWATGWLHNRIRVIVSSF 364
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
FVKVLQLPW WGMKYFWD LLDADLE+D LGWQYISG +PDG +R+D+ Q EGYK+DP
Sbjct: 365 FVKVLQLPWTWGMKYFWDALLDADLENDILGWQYISGGLPDGHELERMDDLQIEGYKYDP 424
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
GEYVR+WLPEL+RLPTEWIHHPW+AP L+AAG+ELGSNYP P+V AA RL AL
Sbjct: 425 RGEYVRKWLPELSRLPTEWIHHPWDAPPRALRAAGVELGSNYPRPLVEFAAAWSRLQTAL 484
Query: 482 SE 483
E
Sbjct: 485 RE 486
>gi|343403456|dbj|BAK61537.1| cryptochrome1b [Glycine soja]
gi|343403459|dbj|BAK61539.1| cryptochrome1b [Glycine soja]
gi|343403462|dbj|BAK61541.1| cryptochrome1b [Glycine soja]
gi|343403465|dbj|BAK61543.1| cryptochrome1b [Glycine soja]
gi|343403468|dbj|BAK61545.1| cryptochrome1b [Glycine soja]
gi|343403471|dbj|BAK61547.1| cryptochrome1b [Glycine soja]
gi|343403474|dbj|BAK61549.1| cryptochrome1b [Glycine soja]
Length = 345
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/345 (89%), Positives = 329/345 (95%)
Query: 14 DLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTS 73
DLR+EDNPAL AGVRAGAV+AVFIWAPEEEG YYPGRVSRWWLK+SL+HLDSSLR+LGT
Sbjct: 1 DLRIEDNPALTAGVRAGAVVAVFIWAPEEEGQYYPGRVSRWWLKNSLAHLDSSLRNLGTP 60
Query: 74 LVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADL 133
L+TKRSTD++SSL EVVK+TGATQLFFNHLYDPLSLVRDHRAKE LTAQGI VRSFNADL
Sbjct: 61 LITKRSTDTLSSLFEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQGITVRSFNADL 120
Query: 134 LYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDE 193
LYEPWDVNDA G+PF TFAAFWE+CLSMP+DP++PLLPPKRI GD SRCPSDTL+FEDE
Sbjct: 121 LYEPWDVNDAHGRPFTTFAAFWERCLSMPYDPESPLLPPKRIIPGDASRCPSDTLLFEDE 180
Query: 194 SEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVS 253
EK SNALLARAWSPGWSNA+KALTTFINGPLIEYSKNRRKADSATTS LSPHLHFGE+S
Sbjct: 181 LEKASNALLARAWSPGWSNANKALTTFINGPLIEYSKNRRKADSATTSLLSPHLHFGELS 240
Query: 254 VRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLK 313
V+KVFHLVRIKQV WANEGNKAG+ESVNLFLKSIGLREYSRY+SFNHPYSHERPLLGHLK
Sbjct: 241 VKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLK 300
Query: 314 FFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
FF WVV+EGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV
Sbjct: 301 FFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 345
>gi|302755656|ref|XP_002961252.1| hypothetical protein SELMODRAFT_75166 [Selaginella moellendorffii]
gi|300172191|gb|EFJ38791.1| hypothetical protein SELMODRAFT_75166 [Selaginella moellendorffii]
Length = 494
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/494 (62%), Positives = 383/494 (77%), Gaps = 8/494 (1%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
G +IVWFRRDLRVEDNPALAA +AGAV+ +FIW EEEG + PGRVSRWWLK SL H
Sbjct: 2 GSSTTIVWFRRDLRVEDNPALAAASKAGAVVPLFIWCAEEEGEFRPGRVSRWWLKQSLMH 61
Query: 63 LDSSLRSLGTSLVTKRST-DSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTA 121
L+SSL LG L+ ++S S+++LL++ + T ATQ+F+NHLYDP+SL+RDH K L+
Sbjct: 62 LNSSLAKLGCPLLMQKSRGSSLNALLQIARDTKATQVFYNHLYDPVSLIRDHHVKHGLSQ 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS---- 177
GI V++FNADLLYEPW++ DA+G P+ F FW++ L M +PD PLLPPKR++
Sbjct: 122 YGITVQTFNADLLYEPWELFDARGNPYTHFQLFWQRYLGMDHEPDGPLLPPKRLSPPAEP 181
Query: 178 --GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
G + P++ L ED+ EK SNA+LAR W+PGWSNA+KAL F+ GPL +Y NR K
Sbjct: 182 GLGHLG-LPAEELGLEDDFEKSSNAMLARTWTPGWSNANKALDAFLAGPLADYGDNRGKV 240
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
D TTS LSPHLH+GE+S+RKVFH VR KQ+ W +G + + S +LFL+++G REYSRY
Sbjct: 241 DGGTTSMLSPHLHYGELSIRKVFHAVRSKQLLWITDGRQPAERSASLFLRALGYREYSRY 300
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+ F+ P++HER LLGHL+ F W VDEG+FKAWRQGRTGYPLVDAGMRELWATGWLH+RIR
Sbjct: 301 LCFHFPFTHERSLLGHLRHFPWRVDEGFFKAWRQGRTGYPLVDAGMRELWATGWLHNRIR 360
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
V+VSSF VK LQLPWRWGMKYFWDTLLDADLESD LGWQYISG++PDG DR++ P E
Sbjct: 361 VIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRMEIPHVE 420
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G +FDP+G YVR+WLPEL+RLPTEWIH PWNAP SVL AAGIELG NYP P+V I AA+
Sbjct: 421 GRRFDPDGNYVRKWLPELSRLPTEWIHEPWNAPPSVLCAAGIELGCNYPRPVVEIAAARE 480
Query: 476 RLDEALSEMWQQEA 489
RL L +MW+ +
Sbjct: 481 RLQRGLRDMWEHNS 494
>gi|297848668|ref|XP_002892215.1| hypothetical protein ARALYDRAFT_470417 [Arabidopsis lyrata subsp.
lyrata]
gi|297338057|gb|EFH68474.1| hypothetical protein ARALYDRAFT_470417 [Arabidopsis lyrata subsp.
lyrata]
Length = 612
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/566 (55%), Positives = 405/566 (71%), Gaps = 26/566 (4%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
M+ +IVWFRRDLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SL
Sbjct: 1 MTTDKKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HL SL++LG+ L ++ ++VS++L+ ++ TGAT++ FNHLYDP+SLVRDH KE L
Sbjct: 61 AHLSQSLKALGSDLTFIKTHNTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLV 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI----- 175
+GI+V+S+N DLLYEPW++ +G+PF +F+++W+KCL MP + L PP R+
Sbjct: 121 ERGISVQSYNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLDMPIE-SVMLPPPWRLMPITA 179
Query: 176 NSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
+ + C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K
Sbjct: 180 AAEAVWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKV 239
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
+TS LSP+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY
Sbjct: 240 VGNSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRY 299
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+ FN P++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIR
Sbjct: 300 ICFNFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIR 359
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
V+VSSF VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG+IPDG DR+DNP +
Sbjct: 360 VIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQ 419
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G K+DP GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV I+ A+
Sbjct: 420 GAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIETARE 479
Query: 476 RLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTA 535
L A+S + + AA +E + DS ++ ++ I EP P+ +
Sbjct: 480 LLARAISRTREAQIMIGAA----PDEIVADSFEA--------LEANTIKEPGL--CPSVS 525
Query: 536 RRYEDQMVPSMT----TSLVRVEEEE 557
DQ VPS + V+ EEEE
Sbjct: 526 SN--DQQVPSAVRYNGSKRVKPEEEE 549
>gi|302772136|ref|XP_002969486.1| hypothetical protein SELMODRAFT_91442 [Selaginella moellendorffii]
gi|300162962|gb|EFJ29574.1| hypothetical protein SELMODRAFT_91442 [Selaginella moellendorffii]
Length = 494
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/494 (62%), Positives = 383/494 (77%), Gaps = 8/494 (1%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
G +IVWFRRDLRVEDNPALAA +AGAV+ +FIW EEEG + PGRVSRWWLK SL H
Sbjct: 2 GSSTTIVWFRRDLRVEDNPALAAASKAGAVVPLFIWCAEEEGEFRPGRVSRWWLKQSLMH 61
Query: 63 LDSSLRSLGTSLVTKRST-DSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTA 121
L+SSL LG L+ ++S S+++LL++ + T ATQ+F+NHLYDP+SL+RDH K L+
Sbjct: 62 LNSSLTKLGCPLLMQKSRGSSLNALLQIARDTKATQVFYNHLYDPVSLIRDHHVKHGLSQ 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS---- 177
GI V++FNADLLYEPW++ DA+G P+ F FW++ L M +PD PLLPPKR++
Sbjct: 122 YGITVQTFNADLLYEPWELFDARGNPYTHFQLFWQRYLGMDHEPDGPLLPPKRLSPPAEP 181
Query: 178 --GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
G + P++ L ED+ EK SNA+LAR W+PGWSNA+K+L F+ GPL +Y NR K
Sbjct: 182 GLGHLG-LPAEELGLEDDFEKSSNAMLARTWTPGWSNANKSLDAFLAGPLADYGDNRGKV 240
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
D TTS LSPHLH+GE+S+RKVFH VR KQ+ W +G + + S +LFL+++G REYSRY
Sbjct: 241 DGGTTSMLSPHLHYGELSIRKVFHAVRSKQLLWITDGRQPAERSASLFLRALGYREYSRY 300
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+ F+ P++HER LLGHL+ F W VDEG+FKAWRQGRTGYPLVDAGMRELWATGWLH+RIR
Sbjct: 301 LCFHFPFTHERSLLGHLRHFPWRVDEGFFKAWRQGRTGYPLVDAGMRELWATGWLHNRIR 360
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
V+VSSF VK LQLPWRWGMKYFWDTLLDADLESD LGWQYISG++PDG DR++ P E
Sbjct: 361 VIVSSFCVKFLQLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDGHELDRMEIPHIE 420
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G +FDP+G YVR+WLPEL+RLPTEWIH PWNAP SVL AAGIELG NYP P+V I AA+
Sbjct: 421 GRRFDPDGNYVRKWLPELSRLPTEWIHEPWNAPPSVLCAAGIELGCNYPRPVVEIAAARE 480
Query: 476 RLDEALSEMWQQEA 489
RL L +MW+ +
Sbjct: 481 RLQRGLRDMWEHNS 494
>gi|304650441|gb|ADM47404.1| cryptochrome 2 [Brassica juncea]
Length = 619
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/537 (57%), Positives = 391/537 (72%), Gaps = 8/537 (1%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
MS +IVWFRRDLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SL
Sbjct: 1 MSTNKKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HL SL++LG+ L ++ ++VS++L+ V+ATGAT++ FNHLYDP+SLVRDH KE L
Sbjct: 61 AHLTQSLKALGSELTLIKTHNTVSAILDCVRATGATKVVFNHLYDPVSLVRDHTVKEKLV 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI----N 176
+GIAV+S+N DLLYEPW++ +G+PF F ++W+KCL M + L PP R+
Sbjct: 121 ERGIAVQSYNGDLLYEPWEIYCEKGKPFTNFNSYWKKCLDMSVE-SVVLPPPWRLIPLTA 179
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
+ + C + L E+E+EK SNALL RAWSPGWSNADK LT FI LI+Y+KN +K
Sbjct: 180 AETVWACSLEELGLENEAEKPSNALLTRAWSPGWSNADKILTEFIEKQLIDYAKNSKKVV 239
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
+TS LSP+LHFGE+SVR+VF R+KQ+ WA + N G+ES LFL+ IGLR+YSRY+
Sbjct: 240 GNSTSLLSPYLHFGEISVRRVFQCARMKQIIWARDKNGQGEESAVLFLRGIGLRDYSRYI 299
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
FN P++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV
Sbjct: 300 CFNFPFTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 359
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+VSSF VK L LPW+WGMKYFWDTLLDADLE D +GWQYISG++PDG DR+DNP +G
Sbjct: 360 IVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLDNPAIQG 419
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
K+DP GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+
Sbjct: 420 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTAREL 479
Query: 477 LDEALSEMWQQEAASRAA---IENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNN 530
L +A+S + + AA I + E L ++ P +++P R N
Sbjct: 480 LTKAISRTREAQIMIGAAPDEIVADSFEALEAANTVKEHGLCPSSNDQQVPSDVRYN 536
>gi|37725011|gb|AAO23972.1| cryptochrome 2B [Pisum sativum]
Length = 597
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/545 (55%), Positives = 393/545 (72%), Gaps = 13/545 (2%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
G +IVWFRRDLR+EDNPALAA R G+V VFIW P+EEG +YPGRVSRWW+K SL H
Sbjct: 2 GMNRTIVWFRRDLRIEDNPALAAAARDGSVFPVFIWCPKEEGQFYPGRVSRWWMKQSLVH 61
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
LD SL+SLG LV ++ ++ +LLE V A AT++ FNHLYDP+SLVRDH KE L Q
Sbjct: 62 LDQSLKSLGAGLVIIKTDSTLKALLECVNAVQATKVVFNHLYDPVSLVRDHNIKEKLVEQ 121
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-NSGDMS 181
G++V+S+N DLLYEPW++ D G F TF FW CL M +P+ P + I G +
Sbjct: 122 GVSVQSYNGDLLYEPWEIFDESGHAFTTFDPFWNTCLHMQMKTYSPIPPCQLILAQGKVE 181
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
+ + L EDE EK SN+ L R+WSPGWS +DKAL FI L+ YS NR +TS
Sbjct: 182 KHSIEQLGLEDELEKSSNSSLGRSWSPGWSKSDKALAEFIENYLLHYSGNRLNLGGDSTS 241
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP++HFGE+SVRKVF L R KQ+ W +EGN G+ES LFL++IG REYSRY+ F+ P
Sbjct: 242 LLSPYIHFGELSVRKVFQLARTKQILWTHEGNIIGEESATLFLRAIGFREYSRYLCFSFP 301
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
++ ERPLLG+LKFF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+++RV+VSSF
Sbjct: 302 FTLERPLLGNLKFFPWNNDPSNFKAWRQGRTGYPLVDAGMRELWATGWIHNKMRVIVSSF 361
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK+L +PW+WGMKYFWDTLLDADLESD LGWQYISG++PDG +R+D+P+ G K+DP
Sbjct: 362 AVKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHKLERLDDPEVLGRKYDP 421
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
GEY+R+WLPELAR+P EWIHHPW+AP +VL A+G+ELG NYP PI+ ID A+ +L +A+
Sbjct: 422 AGEYIRQWLPELARMPAEWIHHPWDAPLTVLTASGVELGQNYPKPIIDIDLAREQLTQAI 481
Query: 482 SEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQ 541
+MW+ EAA++A+ + + + D ++ I P + + ++ +P A DQ
Sbjct: 482 FKMWETEAATKAS--SSQDRQVVDENEKLLI---PKVFL-------KDKVPRGATSANDQ 529
Query: 542 MVPSM 546
VP +
Sbjct: 530 TVPIL 534
>gi|29467475|dbj|BAC67176.1| cryptochrome 2 [Armoracia rusticana]
Length = 617
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/550 (55%), Positives = 395/550 (71%), Gaps = 10/550 (1%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
M+ +IVWFRRDLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SL
Sbjct: 1 MTTNKKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HL SL++LG+ L ++ ++VS++L+ ++ TGAT++ FNHLYDP+SLVRDH KE L
Sbjct: 61 AHLSQSLKALGSELTLIKTHNTVSAILDCIRITGATKVVFNHLYDPVSLVRDHTVKEKLV 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
GI+V+SFN DLLYEPW++ +G+PF F+++W+KCL M + L PP R+
Sbjct: 121 ELGISVQSFNGDLLYEPWEIYFEKGKPFTNFSSYWKKCLDMSIE-SVMLPPPWRLMPIST 179
Query: 181 SR-----CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
+ C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K
Sbjct: 180 AAEAVWACSIEELGLENETEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKV 239
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
+TS LSP+LH+GE+S+R++F R+KQ+ WA + N GDES +LFLK IGLREYSRY
Sbjct: 240 VGNSTSLLSPYLHYGEISIRRIFQCARMKQIIWARDKNSEGDESADLFLKGIGLREYSRY 299
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+ FN P++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+R+R
Sbjct: 300 ICFNFPFTHEQSLLSHLRFFPWDTDVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRLR 359
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
V+VSSF VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG++PDG DR+DNP +
Sbjct: 360 VIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQ 419
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G K+DP GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+
Sbjct: 420 GAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARE 479
Query: 476 RLDEALSEMWQQEAASRAA---IENGTEEGLGDSSDSAPIAFPP-DIQMEEIPEPARNNL 531
L +A+S + + AA I + E L ++ P +P +++P R N
Sbjct: 480 LLTKAISRTREAQIMIGAAPDEIVVDSFEALEGNTVKEPGLYPSVSSNDQQVPSAVRYNG 539
Query: 532 PTTARRYEDQ 541
+ E++
Sbjct: 540 SKRVKHVEEE 549
>gi|388330328|gb|AFK29442.1| cryptochrome 2 [Arabidopsis halleri subsp. halleri]
Length = 610
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/534 (57%), Positives = 392/534 (73%), Gaps = 12/534 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IVWFRRDLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SL+HL S
Sbjct: 5 TIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQS 64
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L++LG+ L ++ +++S++L+ ++ TGAT++ FNHLYDP+SLVRDH KE L +GI+V
Sbjct: 65 LKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGISV 124
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-----NSGDMS 181
+S+N DLLYEPW++ +G+PF +F+++W+KCL M + L PP R+ + +
Sbjct: 125 QSYNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLDMSIE-SVMLPPPWRLMPITAAAEAIW 183
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K +TS
Sbjct: 184 ACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTS 243
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY+ FN P
Sbjct: 244 LLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNFP 303
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 304 FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSF 363
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG+IPDG DR+DNP +G K+DP
Sbjct: 364 AVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYDP 423
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L +A+
Sbjct: 424 EGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKAI 483
Query: 482 SEMWQQEAASRAA---IENGTEEGLGDSSDSAPIAFPPDIQM--EEIPEPARNN 530
S + + AA I + EGL ++ P P + +++P R N
Sbjct: 484 SRTREAQIMIGAAPDEIVADSFEGLEANTIKEP-GLCPSVSSNDQQVPSAVRYN 536
>gi|302814412|ref|XP_002988890.1| hypothetical protein SELMODRAFT_967 [Selaginella moellendorffii]
gi|300143461|gb|EFJ10152.1| hypothetical protein SELMODRAFT_967 [Selaginella moellendorffii]
Length = 489
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/494 (60%), Positives = 386/494 (78%), Gaps = 12/494 (2%)
Query: 5 GCSI-VWFRRDLRVEDNPALAAGV--RAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLS 61
C+I VWFRRDLR++DNPALAA V + V+ VF+W PEEEG + PGRVSRWWLK SL
Sbjct: 1 ACTILVWFRRDLRLDDNPALAAAVARKGSIVVPVFVWCPEEEGQFQPGRVSRWWLKQSLI 60
Query: 62 HLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTA 121
L SSL LG L+ +R+ ++ +LL++ TGA+Q+F+NHLYDP+SL+RDHR K+ L
Sbjct: 61 QLSSSLERLGAPLLVRRTAGTLDALLQIAHDTGASQVFYNHLYDPVSLIRDHRVKQGLAD 120
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS--GD 179
GI+V++F DLLYEPW++ D QGQ F TF AFW K LSM DP+APLLPP+++ S G
Sbjct: 121 HGISVKTFRGDLLYEPWEIYDDQGQVFTTFQAFWSKSLSMR-DPEAPLLPPRQLLSLPGY 179
Query: 180 MSR-CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
+ + C D L E+E+EK SNALLAR+W+PGW DKA T F++GP+++YS R++ DS
Sbjct: 180 LCQSCSIDQLGLENEAEKSSNALLARSWTPGWCAGDKAFTDFLSGPILQYSIRRKQIDSV 239
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGD-ESVNLFLKSIGLREYSRYMS 297
TTS LSPHLHFGE+S+RK+F+ +R++Q +A D ES+N+FL+++GLREYSRY+S
Sbjct: 240 TTSQLSPHLHFGEISIRKIFYSIRMQQF----RSKEAVDVESMNMFLRALGLREYSRYLS 295
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
FN P++H+R LL +LK F W DEGYFK+WRQGRTGYPLVDAGMR+LWATGWLH +IRVV
Sbjct: 296 FNFPFTHKRSLLANLKHFPWRADEGYFKSWRQGRTGYPLVDAGMRQLWATGWLHCKIRVV 355
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
VSSF VK LQ+PW WGMKYFW+TLLDAD+E+D LGWQYISG +PDG DR +NPQ +GY
Sbjct: 356 VSSFLVKFLQVPWTWGMKYFWETLLDADVENDVLGWQYISGGLPDGHELDRWENPQVKGY 415
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
K DP GEYVR+WLPEL+R+P +WIHHPW+AP ++L+AAG+ELGSNYP PIV + AA R
Sbjct: 416 KLDPKGEYVRKWLPELSRVPIDWIHHPWDAPSTILRAAGVELGSNYPRPIVEVAAAYYRQ 475
Query: 478 DEALSEMWQQEAAS 491
+AL EMW++ A +
Sbjct: 476 QQALDEMWKKSATA 489
>gi|15219720|ref|NP_171935.1| cryptochrome 2 [Arabidopsis thaliana]
gi|30678870|ref|NP_849588.1| cryptochrome 2 [Arabidopsis thaliana]
gi|3913379|sp|Q96524.2|CRY2_ARATH RecName: Full=Cryptochrome-2; AltName: Full=Blue light
photoreceptor
gi|1857038|gb|AAD09837.1| cryptochrome 2 apoprotein [Arabidopsis thaliana]
gi|30793901|gb|AAP40403.1| putative cryptochrome 2 apoprotein [Arabidopsis thaliana]
gi|30794033|gb|AAP40463.1| putative cryptochrome 2 apoprotein [Arabidopsis thaliana]
gi|166007535|gb|ABY77601.1| At1g04400 [Arabidopsis thaliana]
gi|166007545|gb|ABY77606.1| At1g04400 [Arabidopsis thaliana]
gi|166007549|gb|ABY77608.1| At1g04400 [Arabidopsis thaliana]
gi|166007553|gb|ABY77610.1| At1g04400 [Arabidopsis thaliana]
gi|166007559|gb|ABY77613.1| At1g04400 [Arabidopsis thaliana]
gi|166007561|gb|ABY77614.1| At1g04400 [Arabidopsis thaliana]
gi|166007563|gb|ABY77615.1| At1g04400 [Arabidopsis thaliana]
gi|166007565|gb|ABY77616.1| At1g04400 [Arabidopsis thaliana]
gi|166007569|gb|ABY77618.1| At1g04400 [Arabidopsis thaliana]
gi|166007573|gb|ABY77620.1| At1g04400 [Arabidopsis thaliana]
gi|166007575|gb|ABY77621.1| At1g04400 [Arabidopsis thaliana]
gi|166007577|gb|ABY77622.1| At1g04400 [Arabidopsis thaliana]
gi|166007579|gb|ABY77623.1| At1g04400 [Arabidopsis thaliana]
gi|166007585|gb|ABY77626.1| At1g04400 [Arabidopsis thaliana]
gi|166007589|gb|ABY77628.1| At1g04400 [Arabidopsis thaliana]
gi|166007591|gb|ABY77629.1| At1g04400 [Arabidopsis thaliana]
gi|166007597|gb|ABY77632.1| At1g04400 [Arabidopsis thaliana]
gi|332189571|gb|AEE27692.1| cryptochrome 2 [Arabidopsis thaliana]
gi|332189572|gb|AEE27693.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343407880|gb|AEM06547.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343407916|gb|AEM06565.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343407944|gb|AEM06579.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343407982|gb|AEM06598.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343407992|gb|AEM06603.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343408026|gb|AEM06620.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343408040|gb|AEM06627.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343408054|gb|AEM06634.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343408110|gb|AEM06662.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343408120|gb|AEM06667.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343408130|gb|AEM06672.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343408156|gb|AEM06685.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343408222|gb|AEM06718.1| cryptochrome 2 [Arabidopsis thaliana]
Length = 612
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/534 (57%), Positives = 391/534 (73%), Gaps = 12/534 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IVWFRRDLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SL+HL S
Sbjct: 7 TIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQS 66
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L++LG+ L ++ +++S++L+ ++ TGAT++ FNHLYDP+SLVRDH KE L +GI+V
Sbjct: 67 LKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGISV 126
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-----NSGDMS 181
+S+N DLLYEPW++ +G+PF +F ++W+KCL M + L PP R+ + +
Sbjct: 127 QSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIE-SVMLPPPWRLMPITAAAEAIW 185
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K +TS
Sbjct: 186 ACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNSTS 245
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY+ FN P
Sbjct: 246 LLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNFP 305
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 306 FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSF 365
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG+IPDG DR+DNP +G K+DP
Sbjct: 366 AVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYDP 425
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L +A+
Sbjct: 426 EGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKAI 485
Query: 482 SEMWQQEAASRAA---IENGTEEGLGDSSDSAPIAFPPDIQM--EEIPEPARNN 530
S + + AA I + E LG ++ P P + +++P R N
Sbjct: 486 SRTREAQIMIGAAPDEIVADSFEALGANTIKEP-GLCPSVSSNDQQVPSAVRYN 538
>gi|166007547|gb|ABY77607.1| At1g04400 [Arabidopsis thaliana]
gi|166007551|gb|ABY77609.1| At1g04400 [Arabidopsis thaliana]
gi|166007555|gb|ABY77611.1| At1g04400 [Arabidopsis thaliana]
gi|166007557|gb|ABY77612.1| At1g04400 [Arabidopsis thaliana]
gi|166007567|gb|ABY77617.1| At1g04400 [Arabidopsis thaliana]
gi|343407876|gb|AEM06545.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343407912|gb|AEM06563.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343407950|gb|AEM06582.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343408064|gb|AEM06639.1| cryptochrome 2 [Arabidopsis thaliana]
gi|343408220|gb|AEM06717.1| cryptochrome 2 [Arabidopsis thaliana]
Length = 612
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/560 (55%), Positives = 402/560 (71%), Gaps = 26/560 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IVWFRRDLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SL+HL S
Sbjct: 7 TIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQS 66
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L++LG+ L ++ ++VS++L+ ++ TGAT++ FNHLYDP+SLVRDH KE L +GI+V
Sbjct: 67 LKALGSDLTLIKTHNTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGISV 126
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-----NSGDMS 181
+S+N DLLYEPW++ +G+PF +F ++W+KCL M + L PP R+ + +
Sbjct: 127 QSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIE-SVMLPPPWRLMPITAAAEAIW 185
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K +TS
Sbjct: 186 ACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNSTS 245
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY+ FN P
Sbjct: 246 LLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNFP 305
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 306 FTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSF 365
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG+IPDG DR+DNP +G K+DP
Sbjct: 366 AVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYDP 425
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L +A+
Sbjct: 426 EGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLGKAI 485
Query: 482 SEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQ 541
S + ++ I +E + DS ++ ++ I EP P+ + DQ
Sbjct: 486 S----RTREAQIMIGASPDEIVADSLEA--------LEANTIKEPGL--CPSVSSN--DQ 529
Query: 542 MVPSMT----TSLVRVEEEE 557
VPS + ++ EEEE
Sbjct: 530 QVPSAVRYNGSKRLKPEEEE 549
>gi|1514443|emb|CAA67508.1| blue light receptor [Arabidopsis thaliana]
Length = 612
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/534 (57%), Positives = 391/534 (73%), Gaps = 12/534 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IVWFRRDLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SL+HL S
Sbjct: 7 TIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQS 66
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L++LG+ L ++ +++S++L+ ++ TGAT++ FNHLYDP+SLVRDH KE L +GI+V
Sbjct: 67 LKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGISV 126
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-----NSGDMS 181
+S+N DLLYEPW++ +G+PF +F ++W+KCL M + L PP R+ + +
Sbjct: 127 QSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIE-SVMLPPPWRLMPITAAAEAIW 185
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K +TS
Sbjct: 186 ACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNSTS 245
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY+ FN P
Sbjct: 246 LLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNFP 305
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 306 FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSF 365
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG+IPDG DR+DNP +G K+DP
Sbjct: 366 AVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYDP 425
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L +A+
Sbjct: 426 EGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKAI 485
Query: 482 SEMWQQEAASRAA---IENGTEEGLGDSSDSAPIAFPPDIQM--EEIPEPARNN 530
S + + AA I + E LG ++ P P + +++P R N
Sbjct: 486 SRTREAQIMIGAAPDEIVADSFEALGANTIKEP-GLCPSVSSNDQQVPSAVRYN 538
>gi|45935264|gb|AAS79667.1| cryptochrome 2B apoprotein [Pisum sativum]
gi|45935266|gb|AAS79668.1| cryptochrome 2B apoprotein [Pisum sativum]
Length = 598
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/545 (55%), Positives = 388/545 (71%), Gaps = 12/545 (2%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
G +IVWFRRDLR+EDNPALAA R G+V VFIW P+EEG +YPGRVSRWW+K SL H
Sbjct: 2 GMNRTIVWFRRDLRIEDNPALAAAARDGSVFPVFIWCPKEEGQFYPGRVSRWWMKQSLVH 61
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
LD SL+SLG LV ++ ++ +LLE V A AT++ FNHLYDP+SLVRDH KE L Q
Sbjct: 62 LDQSLKSLGAGLVIIKTDSTLKALLECVNAVQATKVVFNHLYDPVSLVRDHNIKEKLVEQ 121
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-NSGDMS 181
G++V+S+N DLLYEPW++ D G F TF FW CL M +P+ P + I G +
Sbjct: 122 GVSVQSYNGDLLYEPWEIFDESGHAFTTFDPFWNTCLHMQMKTYSPIPPCQLILAQGKVE 181
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
+ + L EDE EK SN+ L R+WSPGWS +DKAL FI L+ YS NR +TS
Sbjct: 182 KHSIEQLGLEDELEKSSNSSLGRSWSPGWSKSDKALAEFIENYLLHYSGNRLNLGGDSTS 241
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP++HFGE+SVRKVF L R KQ+ W +EGN G+ES LFL++IG REYSRY+ F+ P
Sbjct: 242 LLSPYIHFGELSVRKVFQLARTKQILWTHEGNIIGEESATLFLRAIGFREYSRYLCFSFP 301
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
++ ERPLLG+LKFF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+++RV+VSSF
Sbjct: 302 FTLERPLLGNLKFFPWNNDPSNFKAWRQGRTGYPLVDAGMRELWATGWIHNKMRVIVSSF 361
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK+L +PW+WGMKYFWDTLLDADLESD LGWQYISG++PDG +R+D+P+ G K+DP
Sbjct: 362 AVKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHKLERLDDPEVLGRKYDP 421
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
GEY+R+WLPELAR+P EWIHHPW+AP +VL A+G+ELG NYP PI+ ID A+ +L +A+
Sbjct: 422 AGEYIRQWLPELARMPAEWIHHPWDAPLTVLTASGVELGQNYPKPIIDIDLAREQLTQAI 481
Query: 482 SEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQ 541
+MW+ EAA+ A+ E + D P + + ++ +P A DQ
Sbjct: 482 LKMWETEAATEASSSQDRHEVV----DENEKLLIPKVFL-------KDKVPRGATSANDQ 530
Query: 542 MVPSM 546
VP +
Sbjct: 531 TVPIL 535
>gi|388330326|gb|AFK29441.1| cryptochrome 2 [Arabidopsis halleri subsp. gemmifera]
Length = 610
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 295/481 (61%), Positives = 372/481 (77%), Gaps = 6/481 (1%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IVWFRRDLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SL+HL S
Sbjct: 5 TIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQS 64
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L++LG+ L ++ ++VS++L+ ++ TGAT++ FNHLYDP+SLVRDH KE L +GI+V
Sbjct: 65 LKALGSDLTLIKTHNTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGISV 124
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-----NSGDMS 181
+S+N DLLYEPW++ +G+PF +F+++W+KCL M + L PP R+ + +
Sbjct: 125 QSYNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLDMSIE-SVMLPPPWRLMPITAAAEAVW 183
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K +TS
Sbjct: 184 ACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTS 243
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY+ FN P
Sbjct: 244 LLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNFP 303
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 304 FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSF 363
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG+IPDG DR+DNP +G K+DP
Sbjct: 364 AVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYDP 423
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L +A+
Sbjct: 424 EGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKAI 483
Query: 482 S 482
S
Sbjct: 484 S 484
>gi|133921974|emb|CAI63876.1| cryptochrome 2 [Brassica napus]
Length = 618
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 297/486 (61%), Positives = 374/486 (76%), Gaps = 5/486 (1%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
MS +IVWFRRDLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SL
Sbjct: 1 MSTNKKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HL SL++LG+ ++ ++VS++L+ V+ATGAT++ FNHLYDP+SLVRDH KE L
Sbjct: 61 AHLTQSLKALGSEPTLIKTHNTVSAILDCVRATGATKVVFNHLYDPVSLVRDHTVKEKLV 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI----N 176
+GI+V+S+N DLLYEPW++ +G+PF F ++W+KCL MP + + PP R+
Sbjct: 121 ERGISVQSYNGDLLYEPWEIYCEKGKPFTNFNSYWKKCLDMPVE-SVVIPPPWRLIPLTA 179
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
+G + C + L E+E+EK SNALL RAWSPGWSNADK LT FI LI+Y+KN +K
Sbjct: 180 AGTVWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILTEFIEKQLIDYAKNSKKVV 239
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
+TS LSP+LHFGE+SVR+VF R+KQ+ WA + N G ES LFL+ IGLR+YSRY+
Sbjct: 240 GNSTSLLSPYLHFGEISVRRVFQCARMKQIIWARDKNGQGVESAVLFLRGIGLRDYSRYI 299
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
FN P++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV
Sbjct: 300 CFNFPFTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 359
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+VSSF VK L LPW+WGMKYFWDTLLDADLE D +GWQYISG++PDG DR+DNP +G
Sbjct: 360 IVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLDNPAIQG 419
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
K+DP GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+
Sbjct: 420 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTAREL 479
Query: 477 LDEALS 482
L +A+S
Sbjct: 480 LTKAIS 485
>gi|2341035|gb|AAB70435.1| Match to Arabidopsis photolysase (PHH1) gene (gb|X99061) and
cryptochrome 2 apoprotein (CRY2) (gb|U43397). ESTs
gb|W43661 and gb|Z25638 come from this gene [Arabidopsis
thaliana]
gi|50659694|gb|AAT80593.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659696|gb|AAT80594.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659698|gb|AAT80595.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659700|gb|AAT80596.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659702|gb|AAT80597.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659722|gb|AAT80607.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659724|gb|AAT80608.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659726|gb|AAT80609.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659728|gb|AAT80610.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659730|gb|AAT80611.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659732|gb|AAT80612.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659734|gb|AAT80613.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659736|gb|AAT80614.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659738|gb|AAT80615.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659740|gb|AAT80616.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659742|gb|AAT80617.1| cryptochrome 2 [Arabidopsis thaliana]
Length = 610
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/534 (57%), Positives = 391/534 (73%), Gaps = 12/534 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IVWFRRDLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SL+HL S
Sbjct: 5 TIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQS 64
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L++LG+ L ++ +++S++L+ ++ TGAT++ FNHLYDP+SLVRDH KE L +GI+V
Sbjct: 65 LKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGISV 124
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-----NSGDMS 181
+S+N DLLYEPW++ +G+PF +F ++W+KCL M + L PP R+ + +
Sbjct: 125 QSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIE-SVMLPPPWRLMPITAAAEAIW 183
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K +TS
Sbjct: 184 ACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNSTS 243
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY+ FN P
Sbjct: 244 LLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNFP 303
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 304 FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSF 363
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG+IPDG DR+DNP +G K+DP
Sbjct: 364 AVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYDP 423
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L +A+
Sbjct: 424 EGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKAI 483
Query: 482 SEMWQQEAASRAA---IENGTEEGLGDSSDSAPIAFPPDIQM--EEIPEPARNN 530
S + + AA I + E LG ++ P P + +++P R N
Sbjct: 484 SRTREAQIMIGAAPDEIVADSFEALGANTIKEP-GLCPSVSSNDQQVPSAVRYN 536
>gi|50659746|gb|AAT80619.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659748|gb|AAT80620.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659750|gb|AAT80621.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659752|gb|AAT80622.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659754|gb|AAT80623.1| cryptochrome 2 [Arabidopsis thaliana]
Length = 610
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/560 (55%), Positives = 402/560 (71%), Gaps = 26/560 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IVWFRRDLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SL+HL S
Sbjct: 5 TIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQS 64
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L++LG+ L ++ ++VS++L+ ++ TGAT++ FNHLYDP+SLVRDH KE L +GI+V
Sbjct: 65 LKALGSDLTLIKTHNTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGISV 124
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-----NSGDMS 181
+S+N DLLYEPW++ +G+PF +F ++W+KCL M + L PP R+ + +
Sbjct: 125 QSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIE-SVMLPPPWRLMPITAAAEAIW 183
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K +TS
Sbjct: 184 ACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNSTS 243
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY+ FN P
Sbjct: 244 LLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNFP 303
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 304 FTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSF 363
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG+IPDG DR+DNP +G K+DP
Sbjct: 364 AVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYDP 423
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L +A+
Sbjct: 424 EGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLGKAI 483
Query: 482 SEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQ 541
S + ++ I +E + DS ++ ++ I EP P+ + DQ
Sbjct: 484 S----RTREAQIMIGASPDEIVADSLEA--------LEANTIKEPGL--CPSVSSN--DQ 527
Query: 542 MVPSMT----TSLVRVEEEE 557
VPS + ++ EEEE
Sbjct: 528 QVPSAVRYNGSKRLKPEEEE 547
>gi|166007537|gb|ABY77602.1| At1g04400 [Arabidopsis thaliana]
gi|166007541|gb|ABY77604.1| At1g04400 [Arabidopsis thaliana]
gi|166007543|gb|ABY77605.1| At1g04400 [Arabidopsis thaliana]
gi|166007571|gb|ABY77619.1| At1g04400 [Arabidopsis thaliana]
gi|166007581|gb|ABY77624.1| At1g04400 [Arabidopsis thaliana]
gi|166007583|gb|ABY77625.1| At1g04400 [Arabidopsis thaliana]
gi|166007587|gb|ABY77627.1| At1g04400 [Arabidopsis thaliana]
gi|166007593|gb|ABY77630.1| At1g04400 [Arabidopsis thaliana]
gi|166007595|gb|ABY77631.1| At1g04400 [Arabidopsis thaliana]
Length = 612
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/534 (57%), Positives = 390/534 (73%), Gaps = 12/534 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IVWFRRDLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SL+HL S
Sbjct: 7 TIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQS 66
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L++LG+ L ++ +++S++L+ ++ TGAT++ FNHLYDP+SLVRDH KE L +GI+V
Sbjct: 67 LKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGISV 126
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-----NSGDMS 181
S+N DLLYEPW++ +G+PF +F ++W+KCL M + L PP R+ + +
Sbjct: 127 SSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIE-SVMLPPPWRLMPITAAAEAIW 185
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K +TS
Sbjct: 186 ACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNSTS 245
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY+ FN P
Sbjct: 246 LLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNFP 305
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 306 FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSF 365
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG+IPDG DR+DNP +G K+DP
Sbjct: 366 AVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYDP 425
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L +A+
Sbjct: 426 EGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKAI 485
Query: 482 SEMWQQEAASRAA---IENGTEEGLGDSSDSAPIAFPPDIQM--EEIPEPARNN 530
S + + AA I + E LG ++ P P + +++P R N
Sbjct: 486 SRTREAQIMIGAAPDEIVADSFEALGANTIKEP-GLCPSVSSNDQQVPSAVRYN 538
>gi|50659704|gb|AAT80598.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659706|gb|AAT80599.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659708|gb|AAT80600.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659710|gb|AAT80601.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659712|gb|AAT80602.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659714|gb|AAT80603.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659716|gb|AAT80604.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659718|gb|AAT80605.1| cryptochrome 2 [Arabidopsis thaliana]
gi|50659720|gb|AAT80606.1| cryptochrome 2 [Arabidopsis thaliana]
Length = 610
Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/534 (57%), Positives = 390/534 (73%), Gaps = 12/534 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IVWFRRDLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SL+HL S
Sbjct: 5 TIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQS 64
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L++LG+ L ++ +++S++L+ ++ TGAT++ FNHLYDP+SLVRDH KE L +GI+V
Sbjct: 65 LKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGISV 124
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-----NSGDMS 181
S+N DLLYEPW++ +G+PF +F ++W+KCL M + L PP R+ + +
Sbjct: 125 SSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIE-SVMLPPPWRLMPITAAAEAIW 183
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K +TS
Sbjct: 184 ACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNSTS 243
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY+ FN P
Sbjct: 244 LLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNFP 303
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 304 FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSF 363
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG+IPDG DR+DNP +G K+DP
Sbjct: 364 AVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYDP 423
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L +A+
Sbjct: 424 EGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKAI 483
Query: 482 SEMWQQEAASRAA---IENGTEEGLGDSSDSAPIAFPPDIQM--EEIPEPARNN 530
S + + AA I + E LG ++ P P + +++P R N
Sbjct: 484 SRTREAQIMIGAAPDEIVADSFEALGANTIKEP-GLCPSVSSNDQQVPSAVRYN 536
>gi|29467479|dbj|BAC67178.1| cryptochrome 2 [Armoracia rusticana]
Length = 617
Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/550 (55%), Positives = 392/550 (71%), Gaps = 10/550 (1%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
M+ +IVWFRRDLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SL
Sbjct: 1 MTTNKKTIVWFRRDLRIEDNPALAAAAHQGSVFPVFIWCPEEEGQFYPGRASRWWMKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HL SL++LG+ L ++ ++VS++L+ ++ TGAT++ FNHLYDP+SLVRDH KE L
Sbjct: 61 AHLSQSLKALGSELTLIKTHNTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLV 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
GI+V+SFN DLLYEPW++ +G+PF +F+++W+KCL M + L PP R+
Sbjct: 121 ELGISVQSFNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLDMSIE-SVMLPPPWRLIPITA 179
Query: 181 S-----RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
+ C + L E+++EK SNALL RAWSPGWSNADK L FI+ LI Y+KN K
Sbjct: 180 AVEAVWACSIEELGLENDAEKPSNALLTRAWSPGWSNADKILNEFIDKQLIYYAKNSNKV 239
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
TS LSP+LH+GE+SVR+VF R+KQ+ WA + N G+ES +LFLK IGLREYSRY
Sbjct: 240 VGNATSLLSPYLHYGEISVRRVFQCARMKQIIWARDKNSEGEESTDLFLKGIGLREYSRY 299
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+ FN P++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIR
Sbjct: 300 ICFNFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIR 359
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
V+VSSF VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG++PDG DR+DNP +
Sbjct: 360 VIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQ 419
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFDP GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+
Sbjct: 420 GAKFDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYVKPIVDIDTARE 479
Query: 476 RLDEALSEMWQQEAASRAAIENGTEEGLG--DSSDSAPIAFPPDIQM--EEIPEPARNNL 531
L +A+S + + AA + + G + + P + +++P R N
Sbjct: 480 LLTKAISRTREAQIMIGAAPDEIVADSFGALEGNTVKETGLCPSVSSNDQQVPSAVRYNG 539
Query: 532 PTTARRYEDQ 541
+ E++
Sbjct: 540 SKRVKHVEEE 549
>gi|18026280|gb|AAL16379.1| cryptochrome 2 [Arabidopsis thaliana]
Length = 612
Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/534 (57%), Positives = 390/534 (73%), Gaps = 12/534 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IVWFRRDLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SL+HL S
Sbjct: 7 TIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQS 66
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L++LG+ L ++ +++S++L+ ++ TGAT++ FNHLYDP+SLVRDH KE L +GI+V
Sbjct: 67 LKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGISV 126
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-----NSGDMS 181
S+N DLLYEPW++ +G+PF +F ++W+KCL M + L PP R+ + +
Sbjct: 127 SSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIE-SVMLPPPWRLMPITAAAEAIW 185
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K +TS
Sbjct: 186 ACLIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNSTS 245
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY+ FN P
Sbjct: 246 LLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNFP 305
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 306 FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSF 365
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG+IPDG DR+DNP +G K+DP
Sbjct: 366 AVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYDP 425
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L +A+
Sbjct: 426 EGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKAI 485
Query: 482 SEMWQQEAASRAA---IENGTEEGLGDSSDSAPIAFPPDIQM--EEIPEPARNN 530
S + + AA I + E LG ++ P P + +++P R N
Sbjct: 486 SRTREAQIMIGAAPDEIVADSFEALGANTIKEP-GLCPSVSSNDQQVPSAVRYN 538
>gi|388330322|gb|AFK29439.1| cryptochrome 2 [Arabidopsis kamchatica]
Length = 610
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/544 (56%), Positives = 395/544 (72%), Gaps = 22/544 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IVWFRRDLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SL+HL S
Sbjct: 5 TIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQS 64
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L+ LG+ L ++ ++VS++L+ ++ TGAT++ FNHLYDP+SLVRDH KE L +GI+V
Sbjct: 65 LKVLGSDLTFIKTHNTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTIKEKLVERGISV 124
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-----NSGDMS 181
+S+N DLLYEPW++ +G+PF +F+++W+KCL MP + L PP R+ + +
Sbjct: 125 QSYNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLDMPIE-SVMLPPPWRLMPITAAAEAVW 183
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K +TS
Sbjct: 184 ACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTS 243
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
L P+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY+ FN P
Sbjct: 244 LLPPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNSP 303
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 304 FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSF 363
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG+IPDG DR+DNP +G K+DP
Sbjct: 364 AVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYDP 423
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L +A+
Sbjct: 424 EGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKAI 483
Query: 482 SEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQ 541
S + + AA +E + DS ++ ++ I EP P+ + DQ
Sbjct: 484 SRTREAQIMIGAA----PDEIVADSFEA--------LEANTIKEPGL--CPSVSSN--DQ 527
Query: 542 MVPS 545
VPS
Sbjct: 528 QVPS 531
>gi|315439454|gb|ADU19845.1| cryptochrome 2b [Brassica napus]
gi|327082233|gb|AEA29691.1| cryptochrome 2b [Brassica napus]
Length = 575
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/534 (56%), Positives = 391/534 (73%), Gaps = 11/534 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IVWFRRDLR+EDNPALAA R G+V VFIW PEEEG ++PGR SRWW+K SL+HL+ S
Sbjct: 7 TIVWFRRDLRIEDNPALAAAAREGSVFPVFIWCPEEEGQFHPGRASRWWMKQSLAHLNQS 66
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L+SLG+ L ++ +VS++L+ V++TGAT++ FNHLYDP+SLVRDH KE L +GI+V
Sbjct: 67 LKSLGSHLTFIKTHSTVSAILDCVRSTGATKVVFNHLYDPVSLVRDHNVKEKLVERGISV 126
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI----NSGDMSR 182
+ +N DLLYEPW++N G+PF +FA +W+KCL M + L PP R+ + +
Sbjct: 127 QGYNGDLLYEPWEINSENGKPFTSFAPYWKKCLDMSVE-SVMLPPPWRLMPLTAAEGVWA 185
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
C + L E+E+EK SNALL RAWSPGWSNADK LT FI LI+Y+KN +K +TS
Sbjct: 186 CSIEELGLENEAEKPSNALLTRAWSPGWSNADKILTEFIERQLIDYAKNSKKVVGNSTSM 245
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSP+LHFGE+SVR+VF VR+K++ WA + N G+ES + FL+ IG REYSRY+ FN P+
Sbjct: 246 LSPYLHFGEISVRRVFQCVRMKKIIWARDKNSEGEESADFFLRGIGQREYSRYICFNFPF 305
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+HE+ LL HL+FF W D G FKAW QGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 306 THEQSLLSHLRFFPWDADVGKFKAWSQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFA 365
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L LPW+WGMKYFWDTLLDADLE D +GWQYISG++PDG DR+DNP +G K+DP
Sbjct: 366 VKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLDNPAIQGAKYDPE 425
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
GEY+R+WLPELAR+PTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L +A+S
Sbjct: 426 GEYIRQWLPELARMPTEWIHHPWDAPSTVLKASGVELGANYAKPIVDIDTARELLTKAIS 485
Query: 483 EMWQQE----AASRAAIENGTEEGLGDSSDSAPIAFPPDIQM--EEIPEPARNN 530
+ + AA + + E G+++ P P + +P R N
Sbjct: 486 RTREAQIMIGAAPDEIVADSYEALEGNNTVKVPGLLCPSASSNDQRVPSAVRYN 539
>gi|18026276|gb|AAL16377.1| cryptochrome 2 [Arabidopsis thaliana]
gi|18026278|gb|AAL16378.1| cryptochrome 2 [Arabidopsis thaliana]
gi|166007539|gb|ABY77603.1| At1g04400 [Arabidopsis thaliana]
Length = 612
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/534 (56%), Positives = 391/534 (73%), Gaps = 12/534 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IVWFRRDLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SL+HL S
Sbjct: 7 TIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQS 66
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L++LG+ L ++ +++S++L+ ++ TGAT++ FNHLYDP+SLVRDH KE L +GI+V
Sbjct: 67 LKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGISV 126
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-----NSGDMS 181
+S+N DLLYEPW++ +G+PF +F ++W+KCL M + L PP R+ + +
Sbjct: 127 QSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIE-SVMLPPPWRLMPITAAAEAIW 185
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K +TS
Sbjct: 186 ACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNSTS 245
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY+ FN P
Sbjct: 246 LLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNFP 305
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 306 FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSF 365
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
+K L LPW+WGMKYFWDTLLDADLE D LGWQYISG+IPDG DR+DNP +G K+DP
Sbjct: 366 AMKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYDP 425
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L +A+
Sbjct: 426 EGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDIARELLAKAI 485
Query: 482 SEMWQQEAASRAA---IENGTEEGLGDSSDSAPIAFPPDIQM--EEIPEPARNN 530
S + + AA I + E LG ++ P P + +++P R N
Sbjct: 486 SRTREAQIMIGAAPDEIVADSFEALGANTIKEP-GLCPSVSSNDQQVPSAVRYN 538
>gi|50659744|gb|AAT80618.1| cryptochrome 2 [Arabidopsis thaliana]
Length = 610
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/534 (56%), Positives = 391/534 (73%), Gaps = 12/534 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IVWFRRDLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SL+HL S
Sbjct: 5 TIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQS 64
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L++LG+ L ++ +++S++L+ ++ TGAT++ FNHLYDP+SLVRDH KE L +GI+V
Sbjct: 65 LKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGISV 124
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-----NSGDMS 181
+S+N DLLYEPW++ +G+PF +F ++W+KCL M + L PP R+ + +
Sbjct: 125 QSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIE-SVMLPPPWRLMPITAAAEAIW 183
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K +TS
Sbjct: 184 ACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNSTS 243
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY+ FN P
Sbjct: 244 LLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNFP 303
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 304 FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSF 363
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
+K L LPW+WGMKYFWDTLLDADLE D LGWQYISG+IPDG DR+DNP +G K+DP
Sbjct: 364 AMKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYDP 423
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L +A+
Sbjct: 424 EGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDIARELLAKAI 483
Query: 482 SEMWQQEAASRAA---IENGTEEGLGDSSDSAPIAFPPDIQM--EEIPEPARNN 530
S + + AA I + E LG ++ P P + +++P R N
Sbjct: 484 SRTREAQIMIGAAPDEIVADSFEALGANTIKEP-GLCPSVSSNDQQVPSAVRYN 536
>gi|388330324|gb|AFK29440.1| cryptochrome 2 [Arabidopsis lyrata subsp. lyrata]
Length = 610
Score = 644 bits (1660), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/560 (55%), Positives = 402/560 (71%), Gaps = 26/560 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IVWFRRDLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SL+HL S
Sbjct: 5 TIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQS 64
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L++LG+ L ++ ++VS++L+ ++ TGAT++ FNHLYDP+SLVRDH KE L +GI+V
Sbjct: 65 LKALGSDLTFIKTHNTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGISV 124
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-----NSGDMS 181
+S+N DLLYEPW++ +G+PF +F+++W+KCL MP + L PP R+ + +
Sbjct: 125 QSYNGDLLYEPWEIYCEKGKPFTSFSSYWKKCLDMPIE-SVMLPPPWRLMPITAAAEAVW 183
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+K+ +K +TS
Sbjct: 184 ACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKSSKKVVGNSTS 243
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY+ FN P
Sbjct: 244 LLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNFP 303
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 304 FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSF 363
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L LPW+WGMKYFWDTLLDADLE D LGW YISG+IPDG DR+DNP +G K+DP
Sbjct: 364 AVKFLLLPWKWGMKYFWDTLLDADLECDILGWLYISGSIPDGHELDRLDNPALQGAKYDP 423
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV I+ A+ L A+
Sbjct: 424 EGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIETARELLARAI 483
Query: 482 SEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQ 541
S + + AA +E + DS ++ ++ I EP P+ + DQ
Sbjct: 484 SRTREAQIMIGAA----PDEIVADSFEA--------LEANTIKEPGL--CPSVSSN--DQ 527
Query: 542 MVPSMT----TSLVRVEEEE 557
VPS + V+ EEEE
Sbjct: 528 QVPSAVRYNGSKRVKPEEEE 547
>gi|28372347|dbj|BAC56984.1| cryptochrome 2 [Oryza sativa Japonica Group]
gi|48716244|dbj|BAD23780.1| cryptochrome 2 [Oryza sativa Japonica Group]
gi|215686763|dbj|BAG89613.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623271|gb|EEE57403.1| hypothetical protein OsJ_07585 [Oryza sativa Japonica Group]
Length = 651
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/581 (52%), Positives = 404/581 (69%), Gaps = 19/581 (3%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
M+G ++VWFRRDLR++DNPALA+ R GAV+ VFIW P +EG +YPGR SRWWLK SL
Sbjct: 1 MAGSERTVVWFRRDLRIDDNPALASAARDGAVLPVFIWCPADEGQFYPGRCSRWWLKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
HL SL SLG LV R+ ++ +LL + + GAT+L +NHLYDP+SLVRD + K+ L+
Sbjct: 61 PHLSQSLESLGCPLVLIRAESTLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELS 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI---NS 177
A GI+++SFN DLLYEPW++ D G F TF +WEKC+ +P D L P K +
Sbjct: 121 ALGISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDASPSLAPWKLVPVPGL 180
Query: 178 GDMSRCPSDTLVFED-ESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
+ C D L E + E+ SNALL RAWSPGW NA+K L F++ L+EYSK+ K +
Sbjct: 181 ESVRSCSVDDLGLESSKDEESSNALLMRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVE 240
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
ATTS LSP+LHFGEVSVRKV+ LVR++Q+ W NEG +ES++ F++SIGLREYSRY+
Sbjct: 241 GATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYL 300
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
FN P++HE+ LLG+LK + W VDE FK+WRQG TGYPLVDAGMRELWATGW H+RIRV
Sbjct: 301 CFNFPFTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRV 360
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
++SSF VK L +PW WGMKYFWD LLDADLESD LGWQYISG++PDG R+DNP+ +G
Sbjct: 361 IISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQG 420
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
K+DP+G YVR W+PELAR+PTEWIHHPW+AP +L+ AG+ELG NYP PIV + A+
Sbjct: 421 QKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIAREC 480
Query: 477 LDEALSEMWQQEAASRAAIENG--TEEGLGDSS----------DSAPIAFPPDIQMEEIP 524
LD+++S MWQ + A + A +G E+ L + +++P A P D + +P
Sbjct: 481 LDDSISTMWQLDTAEKLAELDGEVVEDNLSNIKTFDIPKVVLRETSPCALPID---QRVP 537
Query: 525 EPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSLELRNS 565
+ + ++ + S+ ++R + E++ + NS
Sbjct: 538 HASSKDHNLKSKVLKASNRSSICVDMIRSSKMEATSSVANS 578
>gi|307141810|gb|ADN34696.1| cryptochrome 2a [Brassica napus]
gi|327082215|gb|AEA29690.1| cryptochrome 2a [Brassica napus]
Length = 621
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 295/486 (60%), Positives = 372/486 (76%), Gaps = 5/486 (1%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
MS +IVWFRRDLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SL
Sbjct: 1 MSTNKKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HL SL++LG+ L ++ ++VS++L+ V+ATGAT++ FNHLYDP+SLVRDH KE L
Sbjct: 61 AHLTQSLKALGSELTLIKTHNTVSAILDCVRATGATKVVFNHLYDPVSLVRDHTVKEKLV 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI----N 176
+GIAV+S+N DLLYEPW++ +G+PF F ++W+KCL M + L PP R+
Sbjct: 121 ERGIAVQSYNGDLLYEPWEIYCEKGKPFTNFNSYWKKCLDMSVE-SVVLPPPWRLIPLTA 179
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
+ + C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +
Sbjct: 180 AETVWACSLEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKTVV 239
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
+TS LSP+LHFGE+SVR+VF R+KQ+ WA + N G+ES LFL+ IGLR+YSRY+
Sbjct: 240 GNSTSLLSPYLHFGEISVRRVFQCARMKQIIWARDKNGQGEESAVLFLRGIGLRDYSRYI 299
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
FN P++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV
Sbjct: 300 CFNFPFTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 359
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+VSSF VK L LPW+WGMKYFWDTLLDADLE D +GWQYISG++PDG DR+DNP +G
Sbjct: 360 IVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLDNPAIQG 419
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
K+DP GEY+R+WLPELARLPTEWIHHPW+AP ++L+A+G+ELG+NY PIV ID A+
Sbjct: 420 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTILKASGVELGTNYAKPIVDIDTAREL 479
Query: 477 LDEALS 482
L +A+S
Sbjct: 480 LTKAIS 485
>gi|23954324|emb|CAC82538.1| Cryptochrome 2 [Oryza sativa Indica Group]
Length = 651
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/655 (48%), Positives = 429/655 (65%), Gaps = 27/655 (4%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
M+G ++VWFRRDLR++DNPALAA R G V+ VFIW P +EG +YPGR SRWWLK SL
Sbjct: 1 MAGSERTVVWFRRDLRIDDNPALAAAARDGVVLPVFIWCPADEGQFYPGRCSRWWLKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
HL SL SLG LV R+ ++ +LL + + GAT+L +NHLYDP+SLVRD + K+ L+
Sbjct: 61 PHLSQSLESLGCPLVLIRAESTLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELS 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
A GI+++SFN DLLYEPW++ D G F TF +WEKC+ +P D L P K + + +
Sbjct: 121 ALGISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDISPSLAPWKLVPAPGL 180
Query: 181 SR---CPSDTLVFED-ESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
C D L E + E+ SNALL RAWSPGW NA+K L F++ L+EYSK+ K +
Sbjct: 181 ESVRSCSVDDLGLESSKDEESSNALLRRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVE 240
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
ATTS LSP+LHFGEVSVRKV+ LVR++Q+ W NEG +ES++ F++SIGLREYSRY+
Sbjct: 241 GATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYL 300
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
FN P++HE+ LLG+LK + W VDE FK+WRQG TGYPLVDAGMRELWATGW H+RIRV
Sbjct: 301 CFNFPFTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRV 360
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
++SSF VK L +PW WGMKYFWD LLDADLESD LGWQYISG++PDG R+DNP+ +G
Sbjct: 361 IISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQG 420
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
K+DP+G YVR W+PELAR+PTEWIHHPW+AP +L+ AG+ELG NYP PIV + A+
Sbjct: 421 QKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIAREC 480
Query: 477 LDEALSEMWQQEAASRAAIENG--TEEGLGDSS----------DSAPIAFPPDIQMEEIP 524
LD+++S MWQ + A + A +G E+ L + +++P A P D + +P
Sbjct: 481 LDDSISTMWQLDTAEKLAELDGEVVEDNLSNIKTFDIPKVVLRETSPCALPID---QRVP 537
Query: 525 EPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSLELRNSAE-------ESRAEVPRNA 577
+ + ++ + S+ ++R + E++ + NS E+ VP +
Sbjct: 538 HASSKDHNLKSKVLKASNRSSICVDMIRSSKMEATSSVANSPVSRKRSFCETAFHVPSYS 597
Query: 578 NVNQEPRRDTLNQGVLQTVHNNNAFQQFNAAIVLANAEDSTAESSSTSRRERDGG 632
+ + E + G + Q+ V + STA+S S+ R+R
Sbjct: 598 S-SAEVHSHIQDHGGSLVGPSRYLLQEAGRNCVDEVEDSSTADSGSSISRQRKAA 651
>gi|1468977|gb|AAB04997.1| AT-PHH1 [Arabidopsis thaliana]
Length = 612
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/560 (55%), Positives = 400/560 (71%), Gaps = 26/560 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IVWFRRDLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SL+HL S
Sbjct: 7 TIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQS 66
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L++LG+ L ++ +++S++L+ ++ TG T++ FNHLYDP+SLVRDH KE L +GI+V
Sbjct: 67 LKALGSDLTLIQTHNTISAILDCIRVTGPTKVVFNHLYDPVSLVRDHTVKEKLVERGISV 126
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-----NSGDMS 181
+S+N DLLYEPW++ +G+PF +F ++W+KCL M + L PP R+ + +
Sbjct: 127 QSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIE-SVMLPPPWRLMPITAAAEAIW 185
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K +TS
Sbjct: 186 ACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNSTS 245
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY+ FN P
Sbjct: 246 LLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNFP 305
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 306 FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSF 365
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L LPW+WGMKYFWDTL DADLE D LGWQYISG+IPDG DR+DNP +G K+DP
Sbjct: 366 AVKFLLLPWKWGMKYFWDTLXDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYDP 425
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L +A+
Sbjct: 426 EGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKAI 485
Query: 482 SEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQ 541
S + + AA +E + DS ++ + I EP P+ + DQ
Sbjct: 486 SRTREAQIMIGAA----PDEIVADSFEA--------LGANTIKEPGL--CPSVSSN--DQ 529
Query: 542 MVPSMT----TSLVRVEEEE 557
VPS+ + V+ EEEE
Sbjct: 530 QVPSVVRYNGSKRVKPEEEE 549
>gi|1468975|gb|AAB04996.1| AT-PHH1 [Arabidopsis thaliana]
Length = 612
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/560 (55%), Positives = 400/560 (71%), Gaps = 26/560 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IVWFRRDLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SL+HL S
Sbjct: 7 TIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQS 66
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L++LG+ L ++ +++S++L+ ++ TG T++ FNHLYDP+SLVRDH KE L +GI+V
Sbjct: 67 LKALGSDLTLIQTHNTISAILDCIRVTGPTKVVFNHLYDPVSLVRDHTVKEKLVERGISV 126
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-----NSGDMS 181
+S+N DLLYEPW++ +G+PF +F ++W+KCL M + L PP R+ + +
Sbjct: 127 QSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIE-SVMLPPPWRLMPITAAAEAIW 185
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K +TS
Sbjct: 186 ACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNSTS 245
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY+ FN P
Sbjct: 246 LLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNFP 305
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 306 FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSF 365
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L LPW+WGMKYFWDTL DADLE D LGWQYISG+IPDG DR+DNP +G K+DP
Sbjct: 366 GVKFLLLPWKWGMKYFWDTLXDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYDP 425
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L +A+
Sbjct: 426 EGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKAI 485
Query: 482 SEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQ 541
S + + AA +E + DS ++ + I EP P+ + DQ
Sbjct: 486 SRTREAQIMIGAA----PDEIVADSFEA--------LGANTIKEPGL--CPSVSSN--DQ 529
Query: 542 MVPSMT----TSLVRVEEEE 557
VPS+ + V+ EEEE
Sbjct: 530 QVPSVVRYNGSKRVKPEEEE 549
>gi|40644276|emb|CAD35495.1| cryptochrome 2 [Oryza sativa Indica Group]
Length = 651
Score = 639 bits (1649), Expect = e-180, Method: Compositional matrix adjust.
Identities = 317/655 (48%), Positives = 428/655 (65%), Gaps = 27/655 (4%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
M+G ++VWFRRDLR++DNPALAA R G V+ VFIW P +EG +YPGR SRWWLK SL
Sbjct: 1 MAGSERTVVWFRRDLRIDDNPALAAAARDGVVLPVFIWCPADEGQFYPGRCSRWWLKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
HL SL SLG LV R+ ++ +LL + + GAT+L +NHLYDP+SLVRD + K+ L+
Sbjct: 61 PHLSQSLESLGCPLVLIRAESTLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELS 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
A GI+++SFN DLLYEPW++ D G F TF +WEKC+ +P D L P K + + +
Sbjct: 121 ALGISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDISPSLAPWKLVPAPGL 180
Query: 181 SR---CPSDTLVFED-ESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
C D L E + E+ SNALL RAWSPGW NA+K L F++ L+EYSK+ K +
Sbjct: 181 ESVRSCSVDDLGLESSKDEESSNALLRRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVE 240
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
ATTS LSP+LHFGEVSVRKV+ LVR++Q+ W NEG +ES++ F++SIGLREYSRY+
Sbjct: 241 GATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYL 300
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
FN P++ E+ LLG+LK + W VDE FK+WRQG TGYPLVDAGMRELWATGW H+RIRV
Sbjct: 301 CFNFPFTREKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRV 360
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
++SSF VK L +PW WGMKYFWD LLDADLESD LGWQYISG++PDG R+DNP+ +G
Sbjct: 361 IISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQG 420
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
K+DP+G YVR W+PELAR+PTEWIHHPW+AP +L+ AG+ELG NYP PIV + A+
Sbjct: 421 QKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIAREC 480
Query: 477 LDEALSEMWQQEAASRAAIENG--TEEGLGDSS----------DSAPIAFPPDIQMEEIP 524
LD+++S MWQ + A + A +G E+ L + +++P A P D + +P
Sbjct: 481 LDDSISTMWQLDTAEKLAELDGEVVEDNLSNIKTFDIPKVVLRETSPCALPID---QRVP 537
Query: 525 EPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSLELRNSAE-------ESRAEVPRNA 577
+ + ++ + S+ ++R + E++ + NS E+ VP +
Sbjct: 538 HASSKDHNLKSKVLKASNRSSICVDMIRSSKMEATSSVANSPVSRKRSFCETAFHVPSYS 597
Query: 578 NVNQEPRRDTLNQGVLQTVHNNNAFQQFNAAIVLANAEDSTAESSSTSRRERDGG 632
+ + E + G + Q+ V + STA+S S+ R+R
Sbjct: 598 S-SAEVHSHIQDHGGSLVGPSRYLLQEAGRNCVDEVEDSSTADSGSSISRQRKAA 651
>gi|29467481|dbj|BAC67179.1| cryptochrome 2 [Armoracia rusticana]
Length = 617
Score = 639 bits (1648), Expect = e-180, Method: Compositional matrix adjust.
Identities = 300/550 (54%), Positives = 391/550 (71%), Gaps = 10/550 (1%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
M+ +IVWFRRDLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SL
Sbjct: 1 MTTNKKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HL SL++LG+ L ++ ++VS++L+ ++ TGAT++ F+HLYDP+SLVRDH KE L
Sbjct: 61 AHLSQSLKALGSELTLIKTHNTVSAILDCIRVTGATKVVFDHLYDPVSLVRDHTVKEKLV 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRIN---- 176
GI+V+SFN DLLYEPW++ +G+ F F+++W+KCL M + L PP R+
Sbjct: 121 ELGISVQSFNGDLLYEPWEIYCEKGKHFTIFSSYWKKCLDMSIE-SVMLPPPWRLRPITA 179
Query: 177 -SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
+ + C + L E+++EK SNALL RAWSPGWSNADK L FI+ LI Y+KN +K
Sbjct: 180 AADAVWACSIEELGLENDAEKPSNALLTRAWSPGWSNADKILNEFIDKQLIYYAKNSKKV 239
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
+TS LSP+LH+GE+SVR+VF R+KQ+ WA + N G+ES +LFLK IGLREYSRY
Sbjct: 240 VGNSTSLLSPYLHYGEISVRRVFQCARMKQIIWARDKNSEGEESTDLFLKGIGLREYSRY 299
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+ FN P++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIR
Sbjct: 300 ICFNFPFTHEQSLLSHLRFFPWDTDVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIR 359
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
V+VSSF VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG++PDG DR+DNP +
Sbjct: 360 VIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQ 419
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G FDP GEY+R+WLPEL RLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+
Sbjct: 420 GANFDPEGEYIRQWLPELVRLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARE 479
Query: 476 RLDEALSEMWQQEAASRAAIENGTEEGLG--DSSDSAPIAFPPDIQM--EEIPEPARNNL 531
L +A+S + + AA + + G + + P + +++P R N
Sbjct: 480 LLTKAISRTREAQIMIGAAPDEIVADSFGALEGNTVKETGLCPSVSSNDQQVPSAVRYNG 539
Query: 532 PTTARRYEDQ 541
+ E++
Sbjct: 540 SKRVKHVEEE 549
>gi|413953893|gb|AFW86542.1| hypothetical protein ZEAMMB73_862701 [Zea mays]
Length = 654
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 291/503 (57%), Positives = 375/503 (74%), Gaps = 5/503 (0%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
M+G ++VWFRRDLR++DNPALAA + G+V+ +FIW P + G YYPGR SRWWLK SL
Sbjct: 1 MAGPEKTVVWFRRDLRIQDNPALAAAAKGGSVLPIFIWCPSDYGQYYPGRCSRWWLKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDS-VSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
HL SL LG LV R+ DS +++LLE V++ AT++ +N LYDP+SLV D++ K L
Sbjct: 61 VHLGKSLELLGCPLVLIRAEDSTLAALLECVRSISATRVVYNRLYDPISLVLDNKIKNEL 120
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS-- 177
A GI+++SFN DLLYEPWDV D GQ F TF +WEKC+S+P + L P + + +
Sbjct: 121 PAHGISIQSFNGDLLYEPWDVYDENGQAFTTFNKYWEKCMSLPIEISQYLAPTRLVAAPG 180
Query: 178 -GDMSRCPSDTLVFEDESE-KGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
++ C D L E + + SNALL+RAWSPGW NA+ L F++ L+EYS++ K
Sbjct: 181 LANVRCCSIDDLGLESSKDVESSNALLSRAWSPGWRNAENMLEEFVSYGLLEYSEHGMKV 240
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
+TTS LSP+LHFGE+SVR ++ LV+++QV W NEG +ESV LFL+SIG REYSRY
Sbjct: 241 GGSTTSLLSPYLHFGELSVRMIYQLVKMRQVKWQNEGKSEAEESVRLFLRSIGFREYSRY 300
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+ FN+P++HER LG+LK + W++DEG FK+WRQG TGYPLVDAGMRELWATGW H+RIR
Sbjct: 301 LCFNYPFTHERSFLGNLKHYPWLLDEGRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIR 360
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
V+VSSF VK LQ+PW WGMKYFWD LLDADLESD LGWQYISG++PDG R+DNP+ +
Sbjct: 361 VIVSSFAVKFLQIPWIWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQ 420
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G K+DP+GEYVR W+PELAR+PTEWIH PW AP S+LQ AG+ELG NYP PIV + A+
Sbjct: 421 GQKYDPDGEYVRTWIPELARMPTEWIHSPWAAPNSILQVAGVELGFNYPKPIVELHMARE 480
Query: 476 RLDEALSEMWQQEAASRAAIENG 498
LD+A+S MWQ + A++ A +G
Sbjct: 481 CLDDAISTMWQLDTAAKLAELDG 503
>gi|413953894|gb|AFW86543.1| hypothetical protein ZEAMMB73_862701 [Zea mays]
Length = 632
Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust.
Identities = 291/503 (57%), Positives = 375/503 (74%), Gaps = 5/503 (0%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
M+G ++VWFRRDLR++DNPALAA + G+V+ +FIW P + G YYPGR SRWWLK SL
Sbjct: 1 MAGPEKTVVWFRRDLRIQDNPALAAAAKGGSVLPIFIWCPSDYGQYYPGRCSRWWLKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDS-VSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
HL SL LG LV R+ DS +++LLE V++ AT++ +N LYDP+SLV D++ K L
Sbjct: 61 VHLGKSLELLGCPLVLIRAEDSTLAALLECVRSISATRVVYNRLYDPISLVLDNKIKNEL 120
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS-- 177
A GI+++SFN DLLYEPWDV D GQ F TF +WEKC+S+P + L P + + +
Sbjct: 121 PAHGISIQSFNGDLLYEPWDVYDENGQAFTTFNKYWEKCMSLPIEISQYLAPTRLVAAPG 180
Query: 178 -GDMSRCPSDTLVFEDESE-KGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
++ C D L E + + SNALL+RAWSPGW NA+ L F++ L+EYS++ K
Sbjct: 181 LANVRCCSIDDLGLESSKDVESSNALLSRAWSPGWRNAENMLEEFVSYGLLEYSEHGMKV 240
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
+TTS LSP+LHFGE+SVR ++ LV+++QV W NEG +ESV LFL+SIG REYSRY
Sbjct: 241 GGSTTSLLSPYLHFGELSVRMIYQLVKMRQVKWQNEGKSEAEESVRLFLRSIGFREYSRY 300
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+ FN+P++HER LG+LK + W++DEG FK+WRQG TGYPLVDAGMRELWATGW H+RIR
Sbjct: 301 LCFNYPFTHERSFLGNLKHYPWLLDEGRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIR 360
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
V+VSSF VK LQ+PW WGMKYFWD LLDADLESD LGWQYISG++PDG R+DNP+ +
Sbjct: 361 VIVSSFAVKFLQIPWIWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQ 420
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G K+DP+GEYVR W+PELAR+PTEWIH PW AP S+LQ AG+ELG NYP PIV + A+
Sbjct: 421 GQKYDPDGEYVRTWIPELARMPTEWIHSPWAAPNSILQVAGVELGFNYPKPIVELHMARE 480
Query: 476 RLDEALSEMWQQEAASRAAIENG 498
LD+A+S MWQ + A++ A +G
Sbjct: 481 CLDDAISTMWQLDTAAKLAELDG 503
>gi|218191203|gb|EEC73630.1| hypothetical protein OsI_08136 [Oryza sativa Indica Group]
Length = 665
Score = 634 bits (1634), Expect = e-179, Method: Compositional matrix adjust.
Identities = 318/669 (47%), Positives = 429/669 (64%), Gaps = 41/669 (6%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
M+G ++VWFRRDLR++DNPALA+ R GAV+ VFIW P +EG +YPGR SRWWLK SL
Sbjct: 1 MAGSERTVVWFRRDLRIDDNPALASAARDGAVLPVFIWCPADEGQFYPGRCSRWWLKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
HL SL SLG LV R+ ++ +LL + + GAT+L +NHLYDP+SLVRD + K+ L+
Sbjct: 61 PHLSQSLESLGCPLVLIRAESTLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELS 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI---NS 177
A GI+++SFN DLLYEPW++ D G F TF +WEKC+ +P D L P K +
Sbjct: 121 ALGISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDVSPSLAPWKLVPVPGL 180
Query: 178 GDMSRCPSDTLVFED-ESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
+ C D L E + E+ SNALL RAWSPGW NA+K L F++ L+EYSK+ K +
Sbjct: 181 ESVRSCSVDDLGLESSKDEESSNALLRRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVE 240
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
ATTS LSP+LHFGEVSVRKV+ LVR++Q+ W NEG +ES++ F++SIGLREYSRY+
Sbjct: 241 GATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSRYL 300
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
FN P++HE+ LLG+LK + W VDE FK+WRQG TGYPLVDAGMRELWATGW H+RIRV
Sbjct: 301 CFNFPFTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRV 360
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF-- 414
++SSF VK L +PW WGMKYFWD LLDADLESD LGWQYISG++PDG R+DNP+
Sbjct: 361 IISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEIME 420
Query: 415 ------------EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSN 462
+G K+DP+G YVR W+PELAR+PTEWIHHPW+AP +L+ AG+ELG N
Sbjct: 421 NVIATYYALCMVQGQKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEVAGVELGFN 480
Query: 463 YPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENG--TEEGLGDSS----------DSA 510
YP PIV + A+ LD+++S MWQ + A + A +G E+ L + +++
Sbjct: 481 YPKPIVDLHIARECLDDSISTMWQLDTAEKLAELDGEVVEDNLSNIKTFDIPKVVLRETS 540
Query: 511 PIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSLELRNSAE--- 567
P A P D + +P + + ++ + S+ ++R + E++ + NS
Sbjct: 541 PCALPID---QRVPHASSKDHNLKSKVLKASNRSSICVDMIRSSKMEATSSVANSPVSRK 597
Query: 568 ----ESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNNAFQQFNAAIVLANAEDSTAESSS 623
E+ VP ++ + E + G + Q+ V + STA+S S
Sbjct: 598 RSFCETAFHVPSYSS-SAEVHSHIQDHGGSLVGPSRYLLQEAGRNCVDEVEDSSTADSGS 656
Query: 624 TSRRERDGG 632
+ R+R
Sbjct: 657 SISRQRKAA 665
>gi|5689255|dbj|BAA82885.1| blue-light photoreceptor [Oryza sativa Japonica Group]
Length = 681
Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust.
Identities = 321/415 (77%), Positives = 356/415 (85%), Gaps = 7/415 (1%)
Query: 165 PDAPLLPPKRINSGDMS--RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFIN 222
P LLPPKRI G++ RCPSD LVFEDESE+GSNALLARAWSPGW NADKAL F+N
Sbjct: 179 PGGALLPPKRIAPGELPARRCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLN 238
Query: 223 GPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNL 282
GPL++YS NR+KADSA+TS LSP+LHFGE+SVRKVFH VR+KQ+ W+NEGN AGDES L
Sbjct: 239 GPLMDYSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGDESCVL 298
Query: 283 FLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMR 342
FL+SIGLREYSRY++FNHP S E+PLL HL+FF WVVDE YFK WRQGRTGYPLVDAGMR
Sbjct: 299 FLRSIGLREYSRYLTFNHPCSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMR 358
Query: 343 ELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPD 402
+ ATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLD DLESD LGWQYISG++PD
Sbjct: 359 DSRATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDGDLESDRLGWQYISGSLPD 418
Query: 403 GRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSN 462
GR DRIDNPQ EGYKFDP+GEYVRRWLPELARLPTEWIHHPW+APESVLQAAGIELGSN
Sbjct: 419 GRELDRIDNPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSN 478
Query: 463 YPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEE 522
YP PIV +DAAK RL +ALSEMW+ EAASRAA+ENG EEGLGDSSD PIAFPP++QME
Sbjct: 479 YPLPIVELDAAKTRLQDALSEMWELEAASRAAMENGMEEGLGDSSDVPPIAFPPELQMEV 538
Query: 523 IPEPARNNL--PTTA-RRYEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVP 574
PA+ + PTTA RR EDQMVPSMT+SLVR E E S+ + NS +SR EVP
Sbjct: 539 DRAPAQPTVHGPTTAGRRREDQMVPSMTSSLVRAETELSA-DFDNSM-DSRPEVP 591
>gi|161138118|gb|ABX58030.1| cryptochrome 2 [Triticum aestivum]
Length = 650
Score = 632 bits (1630), Expect = e-178, Method: Compositional matrix adjust.
Identities = 306/542 (56%), Positives = 390/542 (71%), Gaps = 8/542 (1%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
M G ++VWFRRDLR++DNPALAA R GAV+ VFIW P EEG +Y GR SRWWLK SL
Sbjct: 1 MGGSERTVVWFRRDLRIDDNPALAAAARDGAVLPVFIWCPAEEGRFYTGRCSRWWLKESL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HL SL++LG LV R+ ++++LL+ V + GAT++ +NHLYDP+SLVRD + K L
Sbjct: 61 AHLARSLQALGCPLVLIRAQTTLAALLQCVDSIGATRVVYNHLYDPISLVRDDKIKNELL 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRIN--SG 178
GI+++SFN DLLYEPW+V D G F TF +WEKC+ + D +P L P R+ SG
Sbjct: 121 GLGISMQSFNGDLLYEPWEVYDENGLAFTTFKKYWEKCMKLHIDI-SPSLAPWRLVPVSG 179
Query: 179 DMSRCPS--DTLVFED-ESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
+ C S D L E + E+ SNALL+RAWSPGW NA+K L F++ L++YSK+R K
Sbjct: 180 IENICSSSIDNLGLESSKDEESSNALLSRAWSPGWRNAEKTLEDFVSHGLLDYSKDRMKV 239
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
TTS LSP+LH+GEVSVRK++ LVR++Q+ W NEG ESVNLFL SIGLREYSRY
Sbjct: 240 AGTTTSLLSPYLHYGEVSVRKIYQLVRVQQIKWENEGKSGAGESVNLFLLSIGLREYSRY 299
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+ FN P++HER LLG+LK + W DE FK+WRQG TGYPLVDAGMRELWATGW H+RIR
Sbjct: 300 LCFNFPFTHERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIR 359
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
V+VSSF VK LQ+PW WGMKYFWD LLDAD+ESD LGWQYISG++PDG R+DNP+ +
Sbjct: 360 VIVSSFAVKFLQIPWTWGMKYFWDVLLDADIESDILGWQYISGSLPDGHELGRLDNPEVQ 419
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G K+DP+GEYVR W+PELAR+P EWIHHPW+AP S+L+ AG+ELG NYP PIV + A+
Sbjct: 420 GQKYDPDGEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHTARE 479
Query: 476 RLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTA 535
LD+A+S MWQ + A + A +G E + D+ P + ++E+ +PT
Sbjct: 480 CLDDAISTMWQLDTAEKLAELDG--EVVEDNLSHIKSFDVPKVVLKELSPHCDRKVPTDD 537
Query: 536 RR 537
R
Sbjct: 538 GR 539
>gi|357150246|ref|XP_003575393.1| PREDICTED: cryptochrome-2-like [Brachypodium distachyon]
Length = 637
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 294/504 (58%), Positives = 373/504 (74%), Gaps = 7/504 (1%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
M G +IVWFRRDLR++DNPALAA R G+V+ +FIW P +EG +YPGR SRWWLK SL
Sbjct: 1 MGGSERTIVWFRRDLRIDDNPALAAAARDGSVLPIFIWCPADEGQFYPGRCSRWWLKESL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDS-VSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
+HL SL +LG L R+ +S +++LL+ V + GAT++ +NHLYDP+SLVRD K L
Sbjct: 61 AHLGKSLEALGCPLHLIRAEESSLAALLQCVHSIGATRVVYNHLYDPVSLVRDDNVKNEL 120
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI---- 175
+ GI+ SFN DLLY+PW+V D G F TF +WE+CL +P + +P L P R+
Sbjct: 121 SVLGISFESFNGDLLYQPWEVYDDNGHAFTTFNLYWEQCLKLPIEV-SPSLAPWRLVPVP 179
Query: 176 NSGDMSRCPSDTLVFED-ESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRK 234
++ C D L E + E+ SNALL+RAWSPGW NA+K L F+ L +YSK+ K
Sbjct: 180 GIENLQSCSIDDLGLESSKDEESSNALLSRAWSPGWRNAEKTLEEFVCQGLQDYSKHGMK 239
Query: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSR 294
ATTS LSP+LH+GE+SVRK++ LVR++Q+ W NEG ES+NLFL+S+GLREYSR
Sbjct: 240 VAGATTSLLSPYLHYGELSVRKIYQLVRMQQIKWENEGKSEAGESINLFLQSVGLREYSR 299
Query: 295 YMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
Y+ FN P++HER LLG+LK + W VDE FK+WRQG TGYPLVDAGMRELWATGW H+RI
Sbjct: 300 YLCFNFPFTHERSLLGNLKHYPWQVDEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRI 359
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
RV+VSSF VK L +PW WGMKYFWD LLDADLESD LGWQYISG++PDG R+DNP+
Sbjct: 360 RVIVSSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEV 419
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
+G K+DP+GEYVR W+PELAR+PTEWIHHPW+AP S+LQ AG+ELG NYP PIV + A+
Sbjct: 420 QGQKYDPDGEYVRTWIPELARMPTEWIHHPWDAPSSILQVAGVELGFNYPKPIVELHTAR 479
Query: 475 CRLDEALSEMWQQEAASRAAIENG 498
LD+A+S MWQ + A + A +G
Sbjct: 480 ECLDDAISTMWQLDTAEKLAELDG 503
>gi|304571328|dbj|BAJ15782.1| cryptochrome2, partial [Cardamine nipponica]
gi|304571330|dbj|BAJ15783.1| cryptochrome2, partial [Cardamine nipponica]
Length = 590
Score = 629 bits (1622), Expect = e-177, Method: Compositional matrix adjust.
Identities = 291/474 (61%), Positives = 363/474 (76%), Gaps = 8/474 (1%)
Query: 14 DLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTS 73
DLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWWLK SLSHL SLR+LG+
Sbjct: 1 DLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWLKQSLSHLSQSLRALGSE 60
Query: 74 LVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADL 133
L ++ ++VS++L+ ++ TGAT++ FNHLYDP+SLVRDH KE L GI+V+SFN DL
Sbjct: 61 LTLIKTHNTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQSFNGDL 120
Query: 134 LYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR-----CPSDTL 188
LYEPW++ +G+PF +F+++W+KCL M + L PP R+ + C + L
Sbjct: 121 LYEPWEIYCEKGKPFTSFSSYWKKCLEMSIE-SVMLPPPWRLMPVTAAAEAVWACSIEEL 179
Query: 189 VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLH 248
E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K +TS LSP+LH
Sbjct: 180 GLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLSPYLH 239
Query: 249 FGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPL 308
+GE+SVR+VF R+KQ+ WA N GDES +LFLK IGLREYSRY+ FN P++HE+ L
Sbjct: 240 YGEISVRRVFQCARMKQIIWAK--NSEGDESADLFLKGIGLREYSRYICFNFPFTHEQSL 297
Query: 309 LGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQL 368
L HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VK L L
Sbjct: 298 LSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWVHNRIRVIVSSFAVKFLLL 357
Query: 369 PWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRR 428
PW+WGMKYFWDTLLDADLE D LGWQYISG++PDG DR+DNP +G KFDP G+Y+R+
Sbjct: 358 PWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAKFDPEGDYIRQ 417
Query: 429 WLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
WLPELARLP+EWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L +A++
Sbjct: 418 WLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKAIA 471
>gi|304571332|dbj|BAJ15784.1| cryptochrome2, partial [Cardamine nipponica]
gi|304571336|dbj|BAJ15786.1| cryptochrome2, partial [Cardamine nipponica]
gi|304571338|dbj|BAJ15787.1| cryptochrome2, partial [Cardamine nipponica]
gi|304571340|dbj|BAJ15788.1| cryptochrome2, partial [Cardamine nipponica]
Length = 590
Score = 629 bits (1622), Expect = e-177, Method: Compositional matrix adjust.
Identities = 290/474 (61%), Positives = 363/474 (76%), Gaps = 8/474 (1%)
Query: 14 DLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTS 73
DLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWWLK SLSHL SL++LG+
Sbjct: 1 DLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWLKQSLSHLSQSLKALGSE 60
Query: 74 LVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADL 133
L ++ ++VS++L+ ++ TGAT++ FNHLYDP+SLVRDH KE L GI+V+SFN DL
Sbjct: 61 LTLIKTHNTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQSFNGDL 120
Query: 134 LYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR-----CPSDTL 188
LYEPW++ +G+PF +F+++W+KCL M + L PP R+ + C + L
Sbjct: 121 LYEPWEIYCEKGKPFTSFSSYWKKCLEMSIE-SVMLPPPWRLMPVTAAAEAVWACSIEEL 179
Query: 189 VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLH 248
E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K +TS LSP+LH
Sbjct: 180 GLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLSPYLH 239
Query: 249 FGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPL 308
+GE+SVR+VF R+KQ+ WA N GDES +LFLK IGLREYSRY+ FN P++HE+ L
Sbjct: 240 YGEISVRRVFQCARMKQIIWAK--NSEGDESADLFLKGIGLREYSRYICFNFPFTHEQSL 297
Query: 309 LGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQL 368
L HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VK L L
Sbjct: 298 LSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWVHNRIRVIVSSFAVKFLLL 357
Query: 369 PWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRR 428
PW+WGMKYFWDTLLDADLE D LGWQYISG++PDG DR+DNP +G KFDP G+Y+R+
Sbjct: 358 PWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAKFDPEGDYIRQ 417
Query: 429 WLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
WLPELARLP+EWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L +A++
Sbjct: 418 WLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKAIA 471
>gi|304571334|dbj|BAJ15785.1| cryptochrome2, partial [Cardamine nipponica]
Length = 590
Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust.
Identities = 290/474 (61%), Positives = 363/474 (76%), Gaps = 8/474 (1%)
Query: 14 DLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTS 73
DLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWWLK SLSHL SL++LG+
Sbjct: 1 DLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWLKQSLSHLSQSLKALGSE 60
Query: 74 LVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADL 133
L ++ ++VS++L+ ++ TGAT++ FNHLYDP+SLVRDH KE L GI+V+SFN DL
Sbjct: 61 LTLIKTHNTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQSFNGDL 120
Query: 134 LYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR-----CPSDTL 188
LYEPW++ +G+PF +F+++W+KCL M + L PP R+ + C + L
Sbjct: 121 LYEPWEIYCEKGKPFTSFSSYWKKCLEMSIE-SVMLPPPWRLMPVTAATEAVWACSIEEL 179
Query: 189 VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLH 248
E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K +TS LSP+LH
Sbjct: 180 GLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLSPYLH 239
Query: 249 FGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPL 308
+GE+SVR+VF R+KQ+ WA N GDES +LFLK IGLREYSRY+ FN P++HE+ L
Sbjct: 240 YGEISVRRVFQCARMKQIIWAK--NSEGDESADLFLKGIGLREYSRYICFNFPFTHEQSL 297
Query: 309 LGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQL 368
L HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VK L L
Sbjct: 298 LSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWVHNRIRVIVSSFAVKFLLL 357
Query: 369 PWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRR 428
PW+WGMKYFWDTLLDADLE D LGWQYISG++PDG DR+DNP +G KFDP G+Y+R+
Sbjct: 358 PWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAKFDPEGDYIRQ 417
Query: 429 WLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
WLPELARLP+EWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L +A++
Sbjct: 418 WLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKAIA 471
>gi|242092996|ref|XP_002436988.1| hypothetical protein SORBIDRAFT_10g013750 [Sorghum bicolor]
gi|241915211|gb|EER88355.1| hypothetical protein SORBIDRAFT_10g013750 [Sorghum bicolor]
Length = 654
Score = 628 bits (1619), Expect = e-177, Method: Compositional matrix adjust.
Identities = 291/503 (57%), Positives = 369/503 (73%), Gaps = 5/503 (0%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
M+G G ++VWFRRDLR+ DNPALAA + G+V+ +FIW P + YYPGR SRWWLK SL
Sbjct: 1 MAGSGKTVVWFRRDLRIHDNPALAAAAKEGSVLPLFIWCPADYEQYYPGRCSRWWLKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDS-VSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
+HL SL LG LV R+ DS +++LLE V AT++ +N LYDP+SLV D + K L
Sbjct: 61 AHLGKSLELLGCPLVLIRAEDSTLATLLECVHCISATRVVYNRLYDPISLVLDDKIKNEL 120
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS-- 177
+A GI+V+SFN DLLYEPWDV D GQ F +F +WEKC+++P + L P + + +
Sbjct: 121 SAHGISVQSFNGDLLYEPWDVYDENGQAFTSFNKYWEKCMNVPIEISQYLAPTRLVAAPG 180
Query: 178 -GDMSRCPSDTLVFEDESE-KGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
++ C D L E + + SNALL+RAWSPGW NA+ L F++ L+EYSK+ K
Sbjct: 181 LANVRCCSIDDLGLESSKDVESSNALLSRAWSPGWRNAENMLEEFLSCGLLEYSKHGMKV 240
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
TTS LSP+LHFGE+SVRKV+ LV + V W NEG +ESV LFL+SIG REYSRY
Sbjct: 241 GGTTTSLLSPYLHFGELSVRKVYQLVTMHHVKWQNEGKSEAEESVRLFLRSIGFREYSRY 300
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+ FN P++HER LG+LK + W++DE FK+WRQG TGYPLVDAGMRELWATGW H+RIR
Sbjct: 301 LCFNFPFTHERSFLGNLKHYPWLLDEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIR 360
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
V+VSSF VK LQ+PW WGMKYFWD LLDADLESD LGWQYISG++PDG R+DNP+ +
Sbjct: 361 VIVSSFAVKCLQIPWIWGMKYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQ 420
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G K+DP+GEYVR W+PELAR+PTEWIH PW+AP S+LQ AG+ELG NYP PIV + A+
Sbjct: 421 GQKYDPDGEYVRTWIPELARMPTEWIHCPWSAPNSILQVAGVELGFNYPKPIVELHMARE 480
Query: 476 RLDEALSEMWQQEAASRAAIENG 498
LD+A+S MWQ + A++ A +G
Sbjct: 481 CLDDAISTMWQLDTAAKLAALDG 503
>gi|304571342|dbj|BAJ15789.1| cryptochrome2, partial [Cardamine alpina]
Length = 591
Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust.
Identities = 288/474 (60%), Positives = 362/474 (76%), Gaps = 8/474 (1%)
Query: 14 DLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTS 73
DLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SLSHL SL++LG+
Sbjct: 1 DLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLSHLSQSLKALGSE 60
Query: 74 LVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADL 133
L ++ ++VS++L+ ++ TGAT++ FNHLYDP+SLVRDH KE L GI+V+SFN DL
Sbjct: 61 LTLIKTHNTVSAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVEVGISVQSFNGDL 120
Query: 134 LYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR-----CPSDTL 188
LYEPW++ +G+P +F+++W+KCL M + L PP R+ + C + L
Sbjct: 121 LYEPWEIYCEKGKPLTSFSSYWKKCLEMSIE-SVMLPPPWRLMPVTAAAEAVWACSIEEL 179
Query: 189 VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLH 248
E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K +TS LSP+LH
Sbjct: 180 GLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSLLSPYLH 239
Query: 249 FGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPL 308
FGE+S+R+VF R+KQ+ WA N GDES +LFLK IGLREYSRY+ FN P++HE+ L
Sbjct: 240 FGEISIRRVFQCARMKQIIWAK--NSEGDESADLFLKGIGLREYSRYLCFNFPFTHEQSL 297
Query: 309 LGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQL 368
L HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VK L L
Sbjct: 298 LSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKFLLL 357
Query: 369 PWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRR 428
PW+WGMKYFWDTLLDADLE D LGWQYISG++PDG DR+DNP +G KFDP G+Y+R+
Sbjct: 358 PWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDNPAIQGAKFDPEGDYIRQ 417
Query: 429 WLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
WLPELARLP+EWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L +A++
Sbjct: 418 WLPELARLPSEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLTKAIA 471
>gi|161138116|gb|ABX58029.1| cryptochrome 2 [Triticum aestivum]
Length = 650
Score = 622 bits (1604), Expect = e-175, Method: Compositional matrix adjust.
Identities = 303/542 (55%), Positives = 387/542 (71%), Gaps = 8/542 (1%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
M G ++VWFRRDLR++DNPALAA R GAV+ VFIW P EEG +Y GR SRWWLK SL
Sbjct: 1 MGGSERTVVWFRRDLRIDDNPALAAAARDGAVLPVFIWCPAEEGRFYTGRCSRWWLKESL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HL SL++LG LV R+ ++++LL+ V + GAT++ + HLYDP+SLVRD + K L
Sbjct: 61 AHLARSLQALGCPLVLIRAQTTLAALLQCVDSIGATRVVYIHLYDPISLVRDDKIKNELL 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRIN--SG 178
GI+++SFN DLLYEPW+V D G PF TF +WEKC+ + D +P L P R+ SG
Sbjct: 121 GLGISMQSFNGDLLYEPWEVYDENGLPFTTFKKYWEKCMKLHIDI-SPSLAPWRLVPVSG 179
Query: 179 DMSRCPS--DTLVFED-ESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
+ C S D L E + E+ SNALL+RAWSPGW NA+K L F++ L++YSK+R K
Sbjct: 180 IENICSSSIDNLGLESSKDEESSNALLSRAWSPGWRNAEKTLEDFVSHGLLDYSKDRMKV 239
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
TTS SP+LH+GEVSVRK++ LVR++Q+ W NEG ES NLFL SIGLREYSRY
Sbjct: 240 AGTTTSLSSPYLHYGEVSVRKIYQLVRVQQIKWENEGKSGAGESDNLFLLSIGLREYSRY 299
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+ FN P++ ER LLG+LK + W DE FK+WRQG TGYPLVDAGMRELWATGW H+RIR
Sbjct: 300 LCFNFPFTRERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIR 359
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
V+VSSF VK LQ+PW WGMKYFWD LLDAD+ESD LGWQYISG++PDG R+DNP+ +
Sbjct: 360 VIVSSFAVKFLQIPWTWGMKYFWDVLLDADIESDILGWQYISGSLPDGHELGRLDNPEVQ 419
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G K+DP+GEYVR W+PELAR+P EWIHHPW+AP S+L+ AG+ELG NYP PIV + A+
Sbjct: 420 GQKYDPDGEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHTARE 479
Query: 476 RLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTA 535
LD+A+S MWQ + A + A +G E + D+ P + ++E+ +PT
Sbjct: 480 CLDDAISTMWQLDTAEKLAELDG--EVVEDNLSHIKSFDVPKVVLKELSPHCDRKVPTDD 537
Query: 536 RR 537
R
Sbjct: 538 GR 539
>gi|326493172|dbj|BAJ85047.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326496489|dbj|BAJ94706.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 656
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 295/503 (58%), Positives = 372/503 (73%), Gaps = 6/503 (1%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
M G ++VWFR+DLR++DNPALAA R GAV+ VFIW P EEG +YPGR SRWWLK SL
Sbjct: 1 MPGSERTVVWFRKDLRIDDNPALAAAARDGAVLPVFIWCPAEEGRFYPGRCSRWWLKESL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HL SL +LG LV R+ ++ +LL+ V + AT++ +NHLYDP+SLVRD + K L
Sbjct: 61 AHLAKSLEALGCPLVLIRAQTTLDALLQCVHSIRATRVVYNHLYDPISLVRDDKIKNELL 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRIN--SG 178
GI+++SFN DLLYEPW++ D G F TF +WEKC+ +P + +P L P R+ SG
Sbjct: 121 GLGISMQSFNGDLLYEPWEIYDENGLAFTTFNMYWEKCMELPIEI-SPSLAPWRLVPVSG 179
Query: 179 DMSRCPS--DTLVFED-ESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
+ C S D L E + E+ SNALL+RAWSPGW NA+K L F+ L++YSK+ K
Sbjct: 180 IENLCTSSIDNLGLESSKDEESSNALLSRAWSPGWRNAEKTLEDFVCHGLLDYSKDGMKV 239
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
TTS LSP+LH+GEVSVRK++ LVR++Q+ NEGN ESVNLFL+SIGLREYSRY
Sbjct: 240 AGTTTSLLSPYLHYGEVSVRKIYQLVRMQQIKCGNEGNSEAGESVNLFLRSIGLREYSRY 299
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+ FN P++HER LLG+LK + W DE FK+WRQG TGYPLVDAGMRELWATGW H+RIR
Sbjct: 300 LCFNFPFTHERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIR 359
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
V+VSSF VK L +PW WGMKYFWD LLDAD+ESD LGWQYISG +PDG R+DNP+ +
Sbjct: 360 VIVSSFAVKFLLIPWTWGMKYFWDVLLDADIESDILGWQYISGCLPDGHELGRLDNPEVQ 419
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G K+DP+GEYVR W+PELAR+P EWIHHPW+AP S+L+ AG+ELG NYP PIV + A+
Sbjct: 420 GQKYDPDGEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHMARE 479
Query: 476 RLDEALSEMWQQEAASRAAIENG 498
LD+A+S MWQ + A + A +G
Sbjct: 480 CLDDAISTMWQLDTAEKLAELDG 502
>gi|730324|sp|P40115.1|CRY1_SINAL RecName: Full=Cryptochrome-1; AltName: Full=Blue light
photoreceptor
gi|414196|emb|CAA50898.1| photolyase [Sinapis alba]
Length = 501
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 286/486 (58%), Positives = 357/486 (73%), Gaps = 5/486 (1%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
MS +IVWFRRDLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SL
Sbjct: 1 MSTNKKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HL SL++LG+ L ++ +VS++L+ V+ATGAT++ FNHLYDP+SLVRDH KE L
Sbjct: 61 AHLRQSLKALGSELTLIKTHSTVSAILDCVRATGATKVVFNHLYDPVSLVRDHTVKEKLV 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
+GI+V+S+N DL P + +KCL M + L PP R+
Sbjct: 121 ERGISVQSYNGDLCMSPGRYTVKRANLLLVLILTGKKCLDMSVE-SVVLPPPWRLMPLSA 179
Query: 181 SR----CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
+ C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K
Sbjct: 180 AETVWACSVEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVV 239
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
+TS LSP+LHFGE+SVR+VF R+KQ+ WA + N G+ES +LFL+ IGLR+YSR +
Sbjct: 240 GNSTSLLSPYLHFGEISVRRVFQCARMKQIIWARDKNGEGEESADLFLRGIGLRDYSRII 299
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
FN P++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV
Sbjct: 300 CFNFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 359
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+VSSF VK L LPW+WGMKYFWDTLLDADLE D +GWQYISG++PDG DR+DNP +G
Sbjct: 360 IVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLDNPAIQG 419
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
K+DP GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+
Sbjct: 420 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVVIDTAREL 479
Query: 477 LDEALS 482
L +A+S
Sbjct: 480 LTKAIS 485
>gi|327342142|gb|AEA50858.1| cry1-1 [Populus tremula]
Length = 308
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 283/308 (91%), Positives = 295/308 (95%)
Query: 106 PLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDP 165
PLSLVRDHRAKE LTAQGI VRSFNADLLYEPWDVNDAQG+PF TF FWE+CLSMPFDP
Sbjct: 1 PLSLVRDHRAKEILTAQGITVRSFNADLLYEPWDVNDAQGRPFTTFDTFWERCLSMPFDP 60
Query: 166 DAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPL 225
+APLLPPKRI SGD+SRCPS TLVFEDESEKGSNALLARAWSPGWSNAD+ALTTFINGPL
Sbjct: 61 EAPLLPPKRIISGDVSRCPSVTLVFEDESEKGSNALLARAWSPGWSNADRALTTFINGPL 120
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
IEYS NRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQV WANEGNKAG+ESVNLF+K
Sbjct: 121 IEYSMNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFIK 180
Query: 286 SIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELW 345
SIGLREYSRY+SFNHPY+HERPLLGHLKFF WVVDEGYFKAWRQGRTGYPLVDAGMRELW
Sbjct: 181 SIGLREYSRYLSFNHPYTHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELW 240
Query: 346 ATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRA 405
A GWLHDRIRVVV+SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R
Sbjct: 241 AAGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDCRE 300
Query: 406 FDRIDNPQ 413
FDRIDNPQ
Sbjct: 301 FDRIDNPQ 308
>gi|255964971|gb|ACU44658.1| cryptochrome 2B [Medicago sativa]
Length = 484
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 278/473 (58%), Positives = 350/473 (73%), Gaps = 2/473 (0%)
Query: 47 YPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDP 106
YPGRVSRWWLK SLSHLD SL+SLG LV ++ ++ +LLE V A A ++ FNHLYDP
Sbjct: 1 YPGRVSRWWLKQSLSHLDQSLKSLGAGLVMIKTDSTLKALLECVNAVQAEKVVFNHLYDP 60
Query: 107 LSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPD 166
+SLVRDH KE L GI+V+S+N DLL+EPW + D G F TF FW +CL M
Sbjct: 61 VSLVRDHNIKEKLVELGISVQSYNGDLLHEPWHIYDESGHAFTTFDPFWNRCLQMQMKTY 120
Query: 167 APLLPPKRI-NSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPL 225
+P+ P + I G + + + L E+E E SNALLARAWSPGWS +DKALT F+ L
Sbjct: 121 SPIPPCQLILAQGKVEKHSIEQLGLENELETSSNALLARAWSPGWSKSDKALTEFVENNL 180
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
I Y+K+R +TS LSP++HFGE+SVRKVF L R KQ+ W NEGN G+ES FLK
Sbjct: 181 IHYTKSRLNLGVDSTSLLSPYIHFGELSVRKVFQLARTKQILWKNEGNIVGEESATFFLK 240
Query: 286 SIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELW 345
+IG REYSRY+ F+ P++ ERPLLG+LKFF W D FKAWR GRTGYPLVDAGMRELW
Sbjct: 241 AIGFREYSRYLCFSFPFTVERPLLGNLKFFPWNTDPSMFKAWRLGRTGYPLVDAGMRELW 300
Query: 346 ATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRA 405
ATGW+H+++RV+VSSF VK+L +PW+WGMKYFWDTLLDADLESD LGWQYISG++PDG
Sbjct: 301 ATGWIHNKMRVIVSSFAVKMLLIPWKWGMKYFWDTLLDADLESDILGWQYISGSLPDGHE 360
Query: 406 FDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPF 465
+R+D+P+ +G K+D GEYVR+WLPELAR+PTEWIHHPWNAP +VL+A+G+ELG NYP
Sbjct: 361 LERLDDPEIQGTKYDSEGEYVRQWLPELARIPTEWIHHPWNAPPTVLRASGVELGQNYPK 420
Query: 466 PIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSD-SAPIAFPPD 517
PI+ ID A+ +L +A+ +MW+ EAAS+++ E + DS + S P F D
Sbjct: 421 PIIDIDLAREQLTQAIFKMWEDEAASKSSTSENKHEVVDDSENLSIPKVFLKD 473
>gi|223944515|gb|ACN26341.1| unknown [Zea mays]
gi|413937404|gb|AFW71955.1| hypothetical protein ZEAMMB73_074626 [Zea mays]
Length = 470
Score = 590 bits (1520), Expect = e-165, Method: Compositional matrix adjust.
Identities = 312/465 (67%), Positives = 368/465 (79%), Gaps = 14/465 (3%)
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
++YS NR+KADSA+TS LSP+LHFGE+SVRKVFH VR+KQ+ W+N+GN AG+ES LFL+
Sbjct: 1 MDYSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNDGNHAGEESCTLFLR 60
Query: 286 SIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELW 345
SIGLREYSRY++FNHP SHE+PLL HL+FF WVV+E YFK WRQGRTGYPLVDAGMRELW
Sbjct: 61 SIGLREYSRYLTFNHPCSHEKPLLSHLRFFPWVVNEVYFKVWRQGRTGYPLVDAGMRELW 120
Query: 346 ATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRA 405
ATGW+HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++PDGR
Sbjct: 121 ATGWVHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGRE 180
Query: 406 FDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPF 465
DRIDNPQFEGYKFDP+GEYVRRWLPELARLPTEWIHHPW+APESVLQAAG+ELGSNYP
Sbjct: 181 LDRIDNPQFEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGVELGSNYPR 240
Query: 466 PIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQME---E 522
PIV +DAA RL +ALSEMW+ EAASRAA+ENG EEGLGDS+D PI FP +++ME +
Sbjct: 241 PIVELDAANSRLQDALSEMWELEAASRAAMENGMEEGLGDSTDEPPIDFPQELRMEVDRQ 300
Query: 523 IPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQE 582
+PA + T RR EDQMVPSMT+S +R E E ++ + +++E+SR EVP N + Q
Sbjct: 301 PVQPAIHAPGVTGRRREDQMVPSMTSSFIRAETELTA-DFGHTSEDSRPEVPSNIHHLQA 359
Query: 583 --PRRDTLNQGVLQT--VHNNNAFQ--QFNAAIVLANAEDSTAESSSTSRRERDGGVVPV 636
R +T++ G VH N+ Q Q N VL A + SSS + RDGGVVPV
Sbjct: 360 RPEREETVDGGTGNAVRVHGNHHQQNLQNNMHRVLGIAPSISEASSSWT--GRDGGVVPV 417
Query: 637 WS-PATSSYSEQLVGDENGIGTSSSYLQRHPQSHQIMNCRRLSQT 680
WS PA S +S+ DE I +S YL RHPQSH +MN +LSQ+
Sbjct: 418 WSPPAASGHSDSYAADEADI-SSRGYLDRHPQSHTMMNWSQLSQS 461
>gi|302761504|ref|XP_002964174.1| hypothetical protein SELMODRAFT_142524 [Selaginella moellendorffii]
gi|300167903|gb|EFJ34507.1| hypothetical protein SELMODRAFT_142524 [Selaginella moellendorffii]
Length = 539
Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust.
Identities = 273/452 (60%), Positives = 350/452 (77%), Gaps = 9/452 (1%)
Query: 51 VSRWWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLV 110
+SRWWLK SL L SSL LG L+ KR ++ +LL++ TGA+Q+F+NHLYDP+SL+
Sbjct: 1 MSRWWLKQSLIQLSSSLERLGAPLLVKRVAGTLDALLQIAHDTGASQVFYNHLYDPVSLI 60
Query: 111 RDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLL 170
RDHR K+ L GI+V +F DLLYEPW++ D QGQ F TF AFW K LSM DP+APLL
Sbjct: 61 RDHRVKQGLADHGISVTTFRGDLLYEPWEIYDDQGQAFTTFQAFWSKSLSMR-DPEAPLL 119
Query: 171 PPKRINS--GDMSR-CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIE 227
PP+++ S G + + C D L E+E+EK SNALLAR+W+PGW DKA T F++GP+++
Sbjct: 120 PPRQLLSLPGYLCQSCSIDQLGLENEAEKSSNALLARSWTPGWCAGDKAFTDFLSGPILQ 179
Query: 228 YSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGD-ESVNLFLKS 286
YS R++ DS TTS LSPHLHFGE+S+RK+F+ +R++Q +A D ES+N+FL++
Sbjct: 180 YSIRRKQIDSVTTSQLSPHLHFGEISIRKIFYSIRMQQF----RSKEAVDFESMNMFLRA 235
Query: 287 IGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWA 346
+GLREYSRY+SFN P++H+R LL +LK F W DEGYFK+WRQGRTGYPLVDAGMR+LWA
Sbjct: 236 LGLREYSRYLSFNFPFTHKRSLLANLKHFPWRADEGYFKSWRQGRTGYPLVDAGMRQLWA 295
Query: 347 TGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAF 406
TGWLH +IRVVVSSF VK LQ+PW WGMKYFW+TLLDAD+E+D LGWQYISG +PDG
Sbjct: 296 TGWLHCKIRVVVSSFLVKFLQVPWTWGMKYFWETLLDADVENDVLGWQYISGGLPDGHEL 355
Query: 407 DRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFP 466
DR +NPQ EGYK DP GEYVR+WLPEL+R+P +WIHHPW+AP ++L+AAG+ELGSNYP P
Sbjct: 356 DRWENPQEEGYKLDPKGEYVRKWLPELSRVPIDWIHHPWDAPSTILRAAGVELGSNYPRP 415
Query: 467 IVRIDAAKCRLDEALSEMWQQEAASRAAIENG 498
IV + AA R +AL EMW++ A + + + G
Sbjct: 416 IVEVAAAYYRQQQALDEMWKKSATAPVSGKGG 447
>gi|77964006|gb|ABB13344.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare]
Length = 462
Score = 576 bits (1484), Expect = e-161, Method: Compositional matrix adjust.
Identities = 305/449 (67%), Positives = 350/449 (77%), Gaps = 13/449 (2%)
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP+LHFGE+SVRKVFHLVR+KQ+ W+NEGN A +ES LFL+S+GLREYSRY+ FN
Sbjct: 2 TSLLSPYLHFGELSVRKVFHLVRMKQLVWSNEGNHAAEESCTLFLRSVGLREYSRYLCFN 61
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
HP SHE+PLL HL+FF WVVDE FK WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS
Sbjct: 62 HPCSHEKPLLAHLRFFPWVVDESTFKFWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 121
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISG++PD R D IDNPQ EGYKF
Sbjct: 122 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDSRELDHIDNPQLEGYKF 181
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP+GEYVRRWLPELARLPTEWIHHPW+AP SVLQAAG+ELGSNYP PIV +D A+ RL E
Sbjct: 182 DPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTAQVRLQE 241
Query: 480 ALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPAR--NNLPTTARR 537
ALSEMWQ EAASRAA++ G EEGLGDSS+ PI FP D+QME EPAR N+ TTA+R
Sbjct: 242 ALSEMWQLEAASRAAMDTGMEEGLGDSSEVPPIEFPQDLQMEVHWEPARVAPNVLTTAQR 301
Query: 538 YEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGV----- 592
+DQMVP+MTTSL RVE E S+ +L NS +SRAEVP + R+ + Q
Sbjct: 302 RQDQMVPTMTTSLNRVETEISA-DLGNSV-DSRAEVPFRMHFEPRTEREEIIQSTGNAVG 359
Query: 593 LQTVHNNNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWS-PATSSYSEQLVGD 651
+H++N FQQ + N + +S+S RDGGVVPVWS PA S +SE D
Sbjct: 360 TNGIHHHNNFQQPQHR--MRNIFAPSVSEASSSWTGRDGGVVPVWSPPAASGHSETYGAD 417
Query: 652 ENGIGTSSSYLQRHPQSHQIMNCRRLSQT 680
E + +S SYL RHPQSH+IMN +LSQ+
Sbjct: 418 EADV-SSRSYLDRHPQSHRIMNWHQLSQS 445
>gi|343403555|dbj|BAK61600.1| cryptochrome2c [Glycine soja]
gi|343403559|dbj|BAK61602.1| cryptochrome2c [Glycine soja]
gi|343403563|dbj|BAK61604.1| cryptochrome2c [Glycine soja]
Length = 413
Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust.
Identities = 266/413 (64%), Positives = 325/413 (78%), Gaps = 3/413 (0%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
G +IVWFRRDLR+EDNPALAA + G+V+ V+IW P+EEG +YPGRVSRWWLK SL+H
Sbjct: 2 GSNRTIVWFRRDLRIEDNPALAAAAKEGSVLPVYIWCPKEEGQFYPGRVSRWWLKQSLAH 61
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
LD SL+SLG+ LV ++ +V++L+E VKA AT++ FNHLYDP+SLVRDH KE L Q
Sbjct: 62 LDQSLKSLGSRLVLIKTHSTVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQ 121
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI--NSGDM 180
GI+V+S+N DLLYEPW+V G+ F TF AFW+KCL M D ++PP ++ G +
Sbjct: 122 GISVQSYNGDLLYEPWEVYSESGRAFTTFNAFWKKCLHMQMDI-VSVVPPWQLIPAEGKV 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
CP + L E+ESEK SNALL RAWSPGW NADKALT F+ L++YSK R K +T
Sbjct: 181 EECPLEELGLENESEKPSNALLGRAWSPGWRNADKALTEFVEQHLLDYSKKRLKVGGDST 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP+LHFGE+SVRKVF + R+KQ+ W NEGN AG+ESVNLFL++IGLREYSRY+ FN
Sbjct: 241 SLLSPYLHFGELSVRKVFQVTRMKQILWTNEGNSAGEESVNLFLRAIGLREYSRYLCFNF 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P++HE+ LLGHLKFF W D FK WRQGRTG+PLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 301 PFTHEKALLGHLKFFPWNPDADIFKNWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVSS 360
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQ 413
F VK+L LPW+WGMKYFWDTLLDADLESD LGWQYISG +PDG +R+DNP+
Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPE 413
>gi|343403561|dbj|BAK61603.1| cryptochrome2c [Glycine soja]
Length = 413
Score = 569 bits (1467), Expect = e-159, Method: Compositional matrix adjust.
Identities = 265/413 (64%), Positives = 325/413 (78%), Gaps = 3/413 (0%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
G +IVWFRRDLR+EDNPALAA + G+V+ V+IW P+EEG +YPGRVSRWWLK SL+H
Sbjct: 2 GSNRTIVWFRRDLRIEDNPALAAAAKEGSVLPVYIWCPKEEGQFYPGRVSRWWLKQSLAH 61
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
LD SL+SLG+ LV ++ +V++L+E VKA AT++ FNHLYDP+SLVRDH KE L Q
Sbjct: 62 LDQSLKSLGSRLVLIKTHSTVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQ 121
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI--NSGDM 180
GI+V+S+N DLLYEPW+V G+ F TF AFW+KCL M D ++PP ++ G +
Sbjct: 122 GISVQSYNGDLLYEPWEVYSESGRAFTTFNAFWKKCLHMQMDI-VSVVPPWQLIPAEGKV 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
CP + L E+ESEK SNALL RAWSPGW NADKALT F+ L++YSK R K +T
Sbjct: 181 EECPLEELGLENESEKPSNALLGRAWSPGWRNADKALTEFVEQHLLDYSKKRLKVGGDST 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP+LHFGE+SVRKVF + R+KQ+ W NEGN AG+ESVNLFL++IGLREYSRY+ FN
Sbjct: 241 SLLSPYLHFGELSVRKVFQVTRMKQILWTNEGNSAGEESVNLFLRAIGLREYSRYLCFNF 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P++HE+ LLGHLKFF W D FK WRQGRTG+PLVDAG+RELWATGW+H+RIRV+VSS
Sbjct: 301 PFTHEKALLGHLKFFPWNPDADIFKNWRQGRTGFPLVDAGVRELWATGWIHNRIRVIVSS 360
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQ 413
F VK+L LPW+WGMKYFWDTLLDADLESD LGWQYISG +PDG +R+DNP+
Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPE 413
>gi|343403557|dbj|BAK61601.1| cryptochrome2c [Glycine soja]
Length = 413
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 265/413 (64%), Positives = 324/413 (78%), Gaps = 3/413 (0%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
G +IVWFRRDLR+EDNPALAA + G+V+ V+IW P+EEG +YPGRVSRWWLK SL+H
Sbjct: 2 GSNRTIVWFRRDLRIEDNPALAAAAKEGSVLPVYIWCPKEEGQFYPGRVSRWWLKQSLAH 61
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
LD SL+SLG+ LV ++ +V++L+E VKA AT++ FNHLYDP+SLVRDH KE L Q
Sbjct: 62 LDQSLKSLGSRLVLIKTHSTVTALVECVKAIQATKVVFNHLYDPVSLVRDHNIKEKLVEQ 121
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI--NSGDM 180
GI+V+S+N DLLYEPW+V G+ F TF AFW+KCL M D ++PP ++ G +
Sbjct: 122 GISVQSYNGDLLYEPWEVYSESGRAFTTFNAFWKKCLHMQMDI-VSVVPPWQLIPAEGKV 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
CP + L E+ESEK SNALL RAWSPGW NADKALT F+ L++YSK R K +T
Sbjct: 181 EECPLEELGLENESEKPSNALLGRAWSPGWRNADKALTEFVEQHLLDYSKKRLKVGGDST 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP+LHFGE+SVRKVF + R+KQ+ W NEGN G+ESVNLFL++IGLREYSRY+ FN
Sbjct: 241 SLLSPYLHFGELSVRKVFQVTRMKQILWTNEGNSDGEESVNLFLRAIGLREYSRYLCFNF 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P++HE+ LLGHLKFF W D FK WRQGRTG+PLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 301 PFTHEKALLGHLKFFPWNPDADIFKNWRQGRTGFPLVDAGMRELWATGWIHNRIRVIVSS 360
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQ 413
F VK+L LPW+WGMKYFWDTLLDADLESD LGWQYISG +PDG +R+DNP+
Sbjct: 361 FAVKMLLLPWKWGMKYFWDTLLDADLESDILGWQYISGGLPDGHELERLDNPE 413
>gi|302772993|ref|XP_002969914.1| hypothetical protein SELMODRAFT_92414 [Selaginella moellendorffii]
gi|300162425|gb|EFJ29038.1| hypothetical protein SELMODRAFT_92414 [Selaginella moellendorffii]
Length = 559
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 291/563 (51%), Positives = 383/563 (68%), Gaps = 43/563 (7%)
Query: 2 SGRGCSIVWFRRDLRVEDNPALAAGVRA-GAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
+ + C++VWFRRDLRVEDNPAL A A G V+ +FIW P EEG + PGR SRWWLK SL
Sbjct: 3 NSKACNLVWFRRDLRVEDNPALLAAANAPGVVLPIFIWCPAEEGEFQPGRHSRWWLKQSL 62
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLY-DPLSLVRDHRAKEAL 119
HLD+SL S G SL+ ++ D++S L+ + +ATG+TQ+F NHLY DP+++ RD R K+ L
Sbjct: 63 IHLDASLASYGCSLLLQKGNDTLSVLVNIARATGSTQIFCNHLYADPITVARDRRVKQRL 122
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAP------LLPPK 173
GI V +FN D L+EPW++ D QG F TFA FW + L F+PD P L P +
Sbjct: 123 LEYGIFVHNFNCDTLHEPWEIYDEQGHAFTTFAGFWNRFLRTRFEPDMPDSSQARLFPYR 182
Query: 174 RI-----NSGDM-SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIE 227
+G++ + C + L EDESEK SN LLAR WSPG +A+ AL F+ GPL +
Sbjct: 183 EYLDLISFAGNLPTPCSIEELCLEDESEKSSNELLARTWSPGCKHANDALQAFLVGPLND 242
Query: 228 YSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSI 287
Y+ +R AD+ +TS LSP+LHFGE+S+RK+++ +R KQ E + +LFL++I
Sbjct: 243 YTTSRETADN-STSHLSPYLHFGELSIRKLYNCIRSKQRD--EEQLFCPRRNAHLFLRAI 299
Query: 288 GLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWAT 347
GLREYSRY+SF+ P++ E+ LL K F W DE +FKAW+ G+TGYPLVDA MRELW+T
Sbjct: 300 GLREYSRYISFHFPFTQEQSLL---KNFPWRNDEIHFKAWKLGKTGYPLVDAAMRELWST 356
Query: 348 GWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFD 407
GWLH ++RVV SSF +K LQLPW WG+KYFWDTLLDADLESD LGW+Y+SG + DG D
Sbjct: 357 GWLHCKLRVVTSSFLIKFLQLPWTWGIKYFWDTLLDADLESDILGWKYVSGCLTDGHELD 416
Query: 408 RIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPI 467
R+ +P EG K DP GEYVRRWLPEL+RLP +WIHHP++AP S LQAAG+ELG+NYP PI
Sbjct: 417 RVLDPHEEGCKLDPKGEYVRRWLPELSRLPNQWIHHPYSAPVSRLQAAGVELGTNYPKPI 476
Query: 468 VRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEP- 526
V ++ AK RL +A+ M ++ + +AA TEEG Q E P P
Sbjct: 477 VDMEVAKYRLSQAVKSMREKNSVEQAA---RTEEG----------------QDETNPRPN 517
Query: 527 ARNNLPTTARRYEDQMVPSMTTS 549
+++N P + DQ+VPS+ T+
Sbjct: 518 SQHNFPAA---FCDQLVPSILTT 537
>gi|302799264|ref|XP_002981391.1| hypothetical protein SELMODRAFT_114313 [Selaginella moellendorffii]
gi|300150931|gb|EFJ17579.1| hypothetical protein SELMODRAFT_114313 [Selaginella moellendorffii]
Length = 559
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 290/563 (51%), Positives = 379/563 (67%), Gaps = 43/563 (7%)
Query: 2 SGRGCSIVWFRRDLRVEDNPALAAGVRA-GAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
+ + C++VWFRRDLRVEDNPAL A A G V+ +FIW P EEG + PGR SRWWLK SL
Sbjct: 3 NSKACNLVWFRRDLRVEDNPALLAAANAPGVVLPIFIWCPAEEGEFQPGRHSRWWLKQSL 62
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLY-DPLSLVRDHRAKEAL 119
HLD+SL S G SL+ ++ D++S L+ + +ATG+TQ+F NHLY DP+++ RD R K+ L
Sbjct: 63 IHLDASLASYGCSLLLQKGNDTLSVLVNIARATGSTQIFCNHLYADPITVARDRRVKQRL 122
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRIN--- 176
GI V +FN D L+EPW++ D QG F TFA FW + L F+PD P RI
Sbjct: 123 LEYGIFVHNFNCDTLHEPWEIYDEQGHAFTTFAGFWNRFLRTRFEPDMPDSSQARIFPYR 182
Query: 177 --------SGDM-SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIE 227
+G++ + C + L EDESEK SN LLAR WSPG +A+ AL F+ PL +
Sbjct: 183 EYLDVISFAGNLPTPCSIEELCLEDESEKSSNELLARTWSPGCKHANDALQAFLVAPLND 242
Query: 228 YSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSI 287
Y+ +R D+ +TS LSP+LHFGE+S+RK+++ +R KQ E + +LFL++I
Sbjct: 243 YTTSRETTDN-STSHLSPYLHFGELSIRKLYNCIRSKQRD--EEQLFCPRRNAHLFLRAI 299
Query: 288 GLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWAT 347
GLREYSRY+SF+ P++ E+ LL K F W DE +FKAW+ G+TGYPLVDA MRELW+T
Sbjct: 300 GLREYSRYISFHFPFTQEQSLL---KNFPWSNDEIHFKAWKLGKTGYPLVDAAMRELWST 356
Query: 348 GWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFD 407
GWLH ++RVV SSF +K LQLPW WG+KYFWDTLLDADLESD LGW+Y+SG + DG D
Sbjct: 357 GWLHCKLRVVTSSFLIKFLQLPWTWGIKYFWDTLLDADLESDILGWKYVSGCLTDGHELD 416
Query: 408 RIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPI 467
R+ +P EG K D GEYVRRWLPEL+RLP +WIHHP++AP S LQAAG+ELG+NYP PI
Sbjct: 417 RVLDPHEEGCKLDSKGEYVRRWLPELSRLPNQWIHHPYSAPVSRLQAAGVELGTNYPKPI 476
Query: 468 VRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEP- 526
V ++ AK RL +A+ M ++ A +AA TEEG Q E P P
Sbjct: 477 VDMEVAKYRLSQAVKSMREKNAVEQAA---RTEEG----------------QDETNPRPN 517
Query: 527 ARNNLPTTARRYEDQMVPSMTTS 549
+R+N P + DQ+VPS+ T+
Sbjct: 518 SRHNFPAA---FCDQLVPSILTT 537
>gi|29467477|dbj|BAC67177.1| cryptochrome 2 [Armoracia rusticana]
Length = 617
Score = 545 bits (1403), Expect = e-152, Method: Compositional matrix adjust.
Identities = 277/554 (50%), Positives = 371/554 (66%), Gaps = 18/554 (3%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
M+ +IVWFRRDLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SL
Sbjct: 1 MTTNKKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HL SL++LG+ L ++ ++VS++L+ ++ TGAT++ FNHLYDP+SLVRDH KE L
Sbjct: 61 AHLSQSLKALGSELTLIKTHNTVSAILDCIRITGATKVVFNHLYDPVSLVRDHTVKEKLV 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
GI+V+SFN DLLYEPW++ +G+PF F+++W+KCL M + L PP R+
Sbjct: 121 ELGISVQSFNGDLLYEPWEIYFEKGKPFTNFSSYWKKCLDMSIE-SVMLPPPWRLMPIST 179
Query: 181 SR-----CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
+ C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K
Sbjct: 180 AAEAVWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKV 239
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREY-SR 294
+TS LSP+LH+GE+SVR++F R+KQ+ WA + N GDES +LFLK IGLREY
Sbjct: 240 VGNSTSLLSPYLHYGEISVRRIFQCARMKQIIWARDKNSEGDESADLFLKGIGLREYLGI 299
Query: 295 YMSFNHPYSHERPLLGHLKFFSW-VVDEGYFKAWRQGRTGYPLVDAGMRELWATGW--LH 351
Y+S + + L G + FS + D F+ + R + L G R A G+ +H
Sbjct: 300 YVSISRLLTSN--LCGVIFVFSLGMADVDKFQG-LETRQDW-LSVGGCRNERALGYGCMH 355
Query: 352 DRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDN 411
+R+RV+VSSF VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG++PDG DR+DN
Sbjct: 356 NRLRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSLPDGHELDRLDN 415
Query: 412 PQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRID 471
P +G K+DP GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PI+ ID
Sbjct: 416 PAIQGAKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPILDID 475
Query: 472 AAKCRLDEALSEMWQQEAASRAA---IENGTEEGLGDSSDSAPIAFPP-DIQMEEIPEPA 527
A+ L +A+S + + AA I + E L ++ P +P +++P
Sbjct: 476 TARELLTKAISRTREAQIMIGAAPDEIVADSFEALEGNTVKEPGLYPSVSSNDQQVPSAV 535
Query: 528 RNNLPTTARRYEDQ 541
R N + E++
Sbjct: 536 RYNGSKRVKHVEEE 549
>gi|343403551|dbj|BAK61598.1| cryptochrome2b [Glycine soja]
Length = 507
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/515 (52%), Positives = 346/515 (67%), Gaps = 32/515 (6%)
Query: 107 LSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPD 166
+SLVRDH KE L GI+V+S+N DLL+EPW + D G F TF FW +CL M
Sbjct: 1 VSLVRDHNIKEKLVELGISVKSYNGDLLFEPWSIYDETGHAFTTFDPFWNRCLHMQIKAF 60
Query: 167 APLLPPKRINS-GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPL 225
+ L+PP+ I + G + +C + L EDESEK SNALL RAW PGW+ DKALT F+ L
Sbjct: 61 S-LIPPQLILAEGKVGKCSIEQLGLEDESEKSSNALLGRAWYPGWNKTDKALTEFVEQHL 119
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
+ YSKNR K +TS LSP++HFGE+SVRKVF L R KQ+ WANEGN AG+ES +FL+
Sbjct: 120 LHYSKNRLKVGGDSTSLLSPYIHFGELSVRKVFQLARTKQILWANEGNSAGEESATVFLR 179
Query: 286 SIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELW 345
+IGLREYSRY+ FN P + E+PLLG+L FF W D FKAWRQGRTGYPLVDAGMRELW
Sbjct: 180 AIGLREYSRYLCFNFPSTIEKPLLGNLAFFPWKTDPANFKAWRQGRTGYPLVDAGMRELW 239
Query: 346 ATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRA 405
ATGW+H++IRV+VSSF VK+L +PWRWGMKYFWDTLLDADLESD LGWQYISG +PDG
Sbjct: 240 ATGWIHNKIRVIVSSFAVKMLLIPWRWGMKYFWDTLLDADLESDILGWQYISGCLPDGHK 299
Query: 406 FDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPF 465
+R+D+P G KFDP GEYVR+WLPELAR+P EWIHHPWNAP +VL+A+G+ELG NYP
Sbjct: 300 LERLDDPAIHGAKFDPEGEYVRQWLPELARMPAEWIHHPWNAPLTVLRASGVELGQNYPK 359
Query: 466 PIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPE 525
PI+ ID A+ +L EA+ +MW+ EAAS+ + G+EE +S +A P +++
Sbjct: 360 PIIDIDQAREQLTEAIFKMWENEAASKGS---GSEERNEVVDESESLAIPKVFLKDKVSH 416
Query: 526 PARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRR 585
++ DQ VP++ + + + AEV + N ++ +
Sbjct: 417 ITSSS--------NDQKVPTLDNPQIDPPNRKRP--------KCSAEVEQKQNNSRNLSK 460
Query: 586 DT---LNQGVLQTV-HNN-------NAFQQFNAAI 609
DT Q ++ ++ HNN N F+ F A++
Sbjct: 461 DTGVGRVQALIHSLSHNNVPRLLISNFFKSFIASL 495
>gi|343403553|dbj|BAK61599.1| cryptochrome2b [Glycine soja]
Length = 507
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 268/515 (52%), Positives = 346/515 (67%), Gaps = 32/515 (6%)
Query: 107 LSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPD 166
+SLVRDH KE L GI+V+S+N DLL+EPW + D G F TF FW +CL M
Sbjct: 1 VSLVRDHNIKEKLVELGISVKSYNGDLLFEPWSIYDETGHAFTTFDPFWNRCLHMQMKAF 60
Query: 167 APLLPPKRINS-GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPL 225
+ L+PP+ I + G + +C + L EDESEK SNALL RAW PGW+ DKALT F+ L
Sbjct: 61 S-LIPPQLILAEGKVGKCSIEQLGLEDESEKSSNALLGRAWYPGWNKTDKALTEFVEQHL 119
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
+ YSKNR K +TS LSP++HFGE+SVRKVF L R KQ+ WANEGN AG+ES +FL+
Sbjct: 120 LHYSKNRLKVGGDSTSLLSPYIHFGELSVRKVFQLARTKQILWANEGNSAGEESATVFLR 179
Query: 286 SIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELW 345
+IGLREYSRY+ FN P + E+PLLG+L FF W D FKAWRQGRTGYPLVDAGMRELW
Sbjct: 180 AIGLREYSRYLCFNFPSTIEKPLLGNLAFFPWKTDPANFKAWRQGRTGYPLVDAGMRELW 239
Query: 346 ATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRA 405
ATGW+H++IRV+VSSF VK+L +PWRWGMKYFWDTLLDADLESD LGWQYISG +PDG
Sbjct: 240 ATGWIHNKIRVIVSSFAVKMLLIPWRWGMKYFWDTLLDADLESDILGWQYISGCLPDGHK 299
Query: 406 FDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPF 465
+R+D+P G KFDP GEYVR+WLPELAR+P EWIHHPWNAP +VL+A+G+ELG NYP
Sbjct: 300 LERLDDPAIHGAKFDPEGEYVRQWLPELARMPAEWIHHPWNAPLTVLRASGVELGQNYPK 359
Query: 466 PIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPE 525
PI+ ID A+ +L EA+ +MW+ EAAS+ + G+EE +S +A P +++
Sbjct: 360 PIIDIDQAREQLTEAIFKMWENEAASKGS---GSEERNEVVDESESLAIPKVFLKDKVSH 416
Query: 526 PARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRR 585
++ DQ VP++ + + + AEV + N ++ +
Sbjct: 417 ITSSS--------NDQKVPTLDNPQIDPPNRKRP--------KCSAEVEQKQNNSRNLSK 460
Query: 586 DT---LNQGVLQTV-HNN-------NAFQQFNAAI 609
DT Q ++ ++ HNN N F+ F A++
Sbjct: 461 DTGVGRVQALIHSLSHNNVPRLLISNFFKSFIASL 495
>gi|212721834|ref|NP_001132651.1| uncharacterized protein LOC100194126 [Zea mays]
gi|194694998|gb|ACF81583.1| unknown [Zea mays]
Length = 428
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 285/438 (65%), Positives = 330/438 (75%), Gaps = 31/438 (7%)
Query: 263 IKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEG 322
+KQ+ W+NEGN A +ES LFL+SIGLREYSRY+SFNHP SHERPLL HL+FF WVVDE
Sbjct: 1 MKQLVWSNEGNHAAEESCTLFLRSIGLREYSRYLSFNHPSSHERPLLAHLRFFPWVVDES 60
Query: 323 YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 382
YFK WRQGRTGYPLVDAGMRELWATGWLHDRIRVVV+SFFVKVLQLPWRWGMKYFWDTLL
Sbjct: 61 YFKIWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVASFFVKVLQLPWRWGMKYFWDTLL 120
Query: 383 DADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIH 442
DADLESDALGWQYI+G++PDGR DRIDNPQFEGYKFDP+GEYVRRW+PELARLPTEWIH
Sbjct: 121 DADLESDALGWQYITGSLPDGRELDRIDNPQFEGYKFDPHGEYVRRWIPELARLPTEWIH 180
Query: 443 HPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEG 502
HPW+AP SVLQAAGIELGSNYP PIV +DAAK RL ALSEMWQ EAASRA + NGTEEG
Sbjct: 181 HPWDAPVSVLQAAGIELGSNYPLPIVELDAAKGRLQAALSEMWQLEAASRATMNNGTEEG 240
Query: 503 LGDSSDSAPIAFPPDIQMEEIPEPA--------RNNLPTTARRYEDQMVPSMTT-SLVRV 553
LGDSS+ + FP ++QME +PA ++P ARR DQMVP+MTT SL R
Sbjct: 241 LGDSSE---VLFPQELQMEVDRQPAPAEAAANVHVHVPMPARRRGDQMVPTMTTSSLNRA 297
Query: 554 EEEESS-LELRNSAEE-SRAEVPRNANVNQEPRRDT------LNQGVLQTVHNNNAFQQF 605
E S+ L + NS EE +RA+VP +A+++ PR + N G Q ++ FQQ
Sbjct: 298 GTEVSADLVVANSEEEDTRAQVPFHAHLHLHPRAEAPPAARRTNNGARQ----HDVFQQR 353
Query: 606 --NAAIVLANAEDSTAESSSTSRRERDGGVVPVWS-PATSSYSEQLVGDENGIGTSSSYL 662
+ L S A SS T R+G VVPVWS PA S +S+ DE + +S SYL
Sbjct: 354 RNHRRDALLAPSASEASSSWTG---REGAVVPVWSPPAASGHSDAFAADEADV-SSRSYL 409
Query: 663 QRHPQSHQIMNCRRLSQT 680
RHPQSH++MN +LSQ+
Sbjct: 410 GRHPQSHRLMNWSQLSQS 427
>gi|326523445|dbj|BAJ92893.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 420
Score = 523 bits (1348), Expect = e-145, Method: Compositional matrix adjust.
Identities = 282/428 (65%), Positives = 331/428 (77%), Gaps = 19/428 (4%)
Query: 263 IKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEG 322
+KQ++W+NE N+ G+E +LFL+SIGLREYSRY++FNHP SHE+PLL HL+FF WVV+E
Sbjct: 1 MKQLTWSNESNRDGEEGCSLFLRSIGLREYSRYLAFNHPCSHEKPLLAHLRFFPWVVNEV 60
Query: 323 YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 382
YFK WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL
Sbjct: 61 YFKVWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 120
Query: 383 DADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIH 442
DADLESDALGWQYISG++PDGR DRIDNPQFEGYKFDP GEYVRRWLPELARLPTEWIH
Sbjct: 121 DADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTEWIH 180
Query: 443 HPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEG 502
HPW+APESVLQAAGIELGSNYP PIV +D AK RL +ALSEMW+ EAASRA IENG EEG
Sbjct: 181 HPWDAPESVLQAAGIELGSNYPLPIVELDEAKSRLQDALSEMWELEAASRAEIENGMEEG 240
Query: 503 LGDSSDSAPIAFPPDIQMEEIPEPARNNLPTT---ARRYEDQMVPSMTTSLVRVEEEESS 559
LGDSSD PIAFP ++Q E+ + A ++ P T ARR DQMVPS+T+SLVR E E+
Sbjct: 241 LGDSSDEPPIAFPQELQHMEV-DRATSHTPATAGPARRRADQMVPSITSSLVRA-ETETE 298
Query: 560 LELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNNAFQQFNAAIVLANAED--- 616
L +E SR EVP + +PR ++ Q V ++ ++N L +
Sbjct: 299 LSAVFESEVSRPEVPSQVHFQAQPRMESREQ-----VASDGTAARYNQQYTLHRVQGGGI 353
Query: 617 --STAESSSTSRRERDGGVVPVWS-PATSSYSEQLVGDENGIGTSSSYLQRHPQSH-QIM 672
ST+E+SS S R+GGVVPVWS PA S +S+ DE I +S SYL R+PQSH ++M
Sbjct: 354 APSTSEASS-SWTGREGGVVPVWSPPAASGHSDPYAADETDI-SSRSYLDRNPQSHNRLM 411
Query: 673 NCRRLSQT 680
N +LSQ+
Sbjct: 412 NWNQLSQS 419
>gi|224102189|ref|XP_002312581.1| predicted protein [Populus trichocarpa]
gi|222852401|gb|EEE89948.1| predicted protein [Populus trichocarpa]
Length = 573
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 270/542 (49%), Positives = 350/542 (64%), Gaps = 64/542 (11%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IVWFRRDLR+EDNPALAA R G V VFIW P+E G +YPGRVSRWWLK S + L S
Sbjct: 6 TIVWFRRDLRIEDNPALAASARDGCVFPVFIWCPKE-GQFYPGRVSRWWLKQSFAQLGQS 64
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L T V +LL+ ++ GAT + FNHLYDP+SLVRDH KE L GI V
Sbjct: 65 LEISCT----------VGALLDSIETIGATTVAFNHLYDPVSLVRDHNIKEKLVELGIFV 114
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI--NSGDMSRCP 184
+S+N DLLYEPW++ D +G F TF A+ +KC M +P LPP R+ +G + C
Sbjct: 115 QSYNGDLLYEPWEIYDERGYAFTTFEAYRDKCWHMQMEP-VSHLPPWRLVPAAGTIVMCS 173
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
+ L EDE+EK SN+LL R WSPGW NA L+ ++K+R + S +S LS
Sbjct: 174 VEELGLEDEAEKSSNSLLGRGWSPGWGNAH----------LVGHAKSRLRVGS-FSSLLS 222
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
P+LHFGE+SVRKVF V++KQ+ W+ E N G ESV FL+SIGLRE SRY+ FN P++H
Sbjct: 223 PYLHFGELSVRKVFWCVQMKQLLWSKEENSVGKESVTQFLRSIGLRECSRYLCFNFPFTH 282
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
ER LL +LK+F W ++ +FKAWRQGRTGYPLVD GMRELWA GW+H+RIR +VSSF VK
Sbjct: 283 ERLLLSNLKYFPWNANQVHFKAWRQGRTGYPLVDDGMRELWAIGWIHNRIRAIVSSFAVK 342
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
VL LPWRWG+ +D LGWQYISG++PD +R+DNP+ +G KFDP GE
Sbjct: 343 VLLLPWRWGL-------------NDILGWQYISGSLPDAHELERLDNPEIQGSKFDPEGE 389
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
Y L R+PTEWIHHP +AP + L+ A +ELG A+ L +A+ +M
Sbjct: 390 Y-------LTRMPTEWIHHPGDAPITALKVAVVELGI----------FAREHLAKAIFKM 432
Query: 485 WQQEAASRAAIENGTEEGLGDSS-DSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMV 543
W+ EAA+RA+ +GT E + D++ D+ +A P + E+ P PA ++ DQ V
Sbjct: 433 WEVEAAARASNSSGTVEVVLDNTDDTKNLAIPKVVLKEKAPCPANSS--------NDQRV 484
Query: 544 PS 545
P+
Sbjct: 485 PT 486
>gi|37725009|gb|AAO23971.1| cryptochrome 2A [Pisum sativum]
Length = 375
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 235/375 (62%), Positives = 286/375 (76%), Gaps = 3/375 (0%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
G +IVWFRRDLR+EDNPALAA R G+V VFIW P+EEG +YPGRVSRWWLK SL+H
Sbjct: 2 GSNRTIVWFRRDLRIEDNPALAAAARDGSVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAH 61
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
LD SL+SLG LV ++ ++++LLE V A AT++ FNHLYDP+SLVRDH KE L
Sbjct: 62 LDQSLKSLGAKLVLIKTDSTLNALLECVNAIQATKVVFNHLYDPVSLVRDHNIKEKLVEL 121
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI--NSGDM 180
GI+V+S+N DLLYEPW++ D +G F TF FWE+CL +P L+PP ++ G +
Sbjct: 122 GISVKSYNGDLLYEPWELYDEKGHAFTTFDPFWERCLHKQMEP-VSLIPPWQLIPAKGKV 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
RC + L E+E EK SNALL RAWSPGW NA+KALT F++ L+ YSKNR+K +T
Sbjct: 181 ERCSIEDLGLENELEKPSNALLGRAWSPGWGNANKALTEFMDKQLLNYSKNRQKVGGDST 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP+LHFGE+SVRKVF + R+KQ+SW NEGN G ESV LFL++IGLREYSRY+ FN
Sbjct: 241 SLLSPYLHFGELSVRKVFQMARVKQISWGNEGNSVGKESVTLFLRAIGLREYSRYLCFNF 300
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P++HER LLGHL FF W D FK WRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSS
Sbjct: 301 PFTHERALLGHLSFFPWNADPSNFKTWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSS 360
Query: 361 FFVKVLQLPWRWGMK 375
F VK+L LPW+WGMK
Sbjct: 361 FAVKMLLLPWKWGMK 375
>gi|21327675|gb|AAC37438.2| CPH1 [Chlamydomonas reinhardtii]
Length = 1008
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 251/498 (50%), Positives = 327/498 (65%), Gaps = 9/498 (1%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAV-IAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFRRDLRV+DNPAL A + A I VFIWAPEEEG + PGR SRWW KHSL L
Sbjct: 8 AVVWFRRDLRVDDNPALVAALAAAPNVIPVFIWAPEEEGQFQPGRCSRWWSKHSLVDLQQ 67
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L +LG+ LV +RSTDS ++LL++V GA +FFNHLYDP+SL+RDH K LTA G+A
Sbjct: 68 ALAALGSRLVIRRSTDSTAALLQLVTELGAEAVFFNHLYDPISLMRDHDCKRGLTAAGVA 127
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
R+FN D+LYEPWDV D QP++TF FW +MP P P+ P + + + PS
Sbjct: 128 HRTFNGDMLYEPWDVLDPNKQPYSTFDDFWNSVRAMPVPPPFPVSAPASMPAVPAA-VPS 186
Query: 186 DTLV-----FEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
T+ F E E S+ L + W PG A L F+ L E+ +R K D +T
Sbjct: 187 MTVAEVDWFFTPEQEASSDQLKFK-WKPGVGGAISELEHFLAERLTEFEHDRAKVDRDST 245
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP +H G +SVR +F+ VR Q W G +S + FL+ +G REYSRY++F+
Sbjct: 246 SRLSPWIHIGSISVRYIFYRVRQCQAEWLAAGTDRA-QSCDDFLQQMGYREYSRYLAFHF 304
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P+ HER LLGHL+ W +D+ FKAWRQG+TGYP+VDA MR+LW++GW H+R RVV +S
Sbjct: 305 PFIHERSLLGHLRACPWRIDQHAFKAWRQGQTGYPIVDAAMRQLWSSGWCHNRGRVVAAS 364
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F VK L LPW+WG+K++WD +DADLE DALGWQY+SG + D F + + + E +FD
Sbjct: 365 FLVKDLLLPWQWGLKHYWDAQIDADLECDALGWQYVSGGMSDAHPFSYMMDLEKEARRFD 424
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P+GEYVRRWLP L+RLPTE+IH PW AP SVL AA +ELG NYP PI+ AK +D A
Sbjct: 425 PDGEYVRRWLPALSRLPTEYIHAPWKAPASVLAAADVELGCNYPLPIITRSDAKANVDYA 484
Query: 481 LSEMWQQEAASRAAIENG 498
+ + A + +G
Sbjct: 485 CGVLEKSAVAPTGSESSG 502
>gi|343408214|gb|AEM06714.1| cryptochrome 2, partial [Arabidopsis thaliana]
Length = 428
Score = 490 bits (1261), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/418 (56%), Positives = 301/418 (72%), Gaps = 12/418 (2%)
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-----NS 177
GI+V+S+N DLLYEPW++ +G+PF +F ++W+KCL M + L PP R+ +
Sbjct: 1 GISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIE-SVMLPPPWRLMPITAAA 59
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
+ C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K
Sbjct: 60 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 119
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
+TS LSP+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY+
Sbjct: 120 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 179
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
FN P++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+
Sbjct: 180 FNFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVI 239
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
VSSF VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG+IPDG DR+DNP +G
Sbjct: 240 VSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGA 299
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
K+DP GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L
Sbjct: 300 KYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELL 359
Query: 478 DEALSEMWQQEAASRAA---IENGTEEGLGDSSDSAPIAFPPDIQM--EEIPEPARNN 530
+A+S + + AA I + E LG +++ P P + +++P R N
Sbjct: 360 AKAISRTREAQIMIGAAPDEIVADSFEALGANTNKEP-GLCPSVSSNDQQVPSAVRYN 416
>gi|159487060|ref|XP_001701553.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
gi|158271494|gb|EDO97311.1| cryptochrome photoreceptor [Chlamydomonas reinhardtii]
Length = 1008
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 250/498 (50%), Positives = 326/498 (65%), Gaps = 9/498 (1%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAV-IAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFRRDLRV+DNPAL A + A I VFIWAPEEEG + PGR SRWW KHSL L
Sbjct: 8 AVVWFRRDLRVDDNPALVAALAAAPNVIPVFIWAPEEEGQFQPGRCSRWWSKHSLVDLQQ 67
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L +LG+ LV +RSTDS ++LL++V GA +FFNHLYDP+SL+RDH K LTA G+A
Sbjct: 68 ALAALGSRLVIRRSTDSTAALLQLVTELGAEAVFFNHLYDPISLMRDHDCKRGLTAAGVA 127
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
R+FN D+LYEPWDV D QP++TF FW +MP P P+ P + + + PS
Sbjct: 128 HRTFNGDMLYEPWDVLDPNKQPYSTFDDFWNSVRAMPVPPPFPVSAPASMPAVPAA-VPS 186
Query: 186 DTLV-----FEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
T+ F E E S+ L + W PG A L F+ L E+ +R K D +T
Sbjct: 187 MTVAEVDWFFTPEQEASSDQLKFK-WKPGVGGAISELEHFLAERLTEFEHDRAKVDRDST 245
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP +H G +SVR +F+ VR Q W G +S + FL+ +G REYSRY++F+
Sbjct: 246 SRLSPWIHIGSISVRYIFYRVRQCQAEWLAAGTDRA-QSCDDFLQQMGYREYSRYLAFHF 304
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P+ HER LL HL+ W +D+ FKAWRQG+TGYP+VDA MR+LW++GW H+R RVV +S
Sbjct: 305 PFIHERSLLRHLRACPWRIDQHAFKAWRQGQTGYPIVDAAMRQLWSSGWCHNRGRVVAAS 364
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F VK L LPW+WG+K++WD +DADLE DALGWQY+SG + D F + + + E +FD
Sbjct: 365 FLVKDLLLPWQWGLKHYWDAQIDADLECDALGWQYVSGGMSDAHPFSYMMDLEKEARRFD 424
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P+GEYVRRWLP L+RLPTE+IH PW AP SVL AA +ELG NYP PI+ AK +D A
Sbjct: 425 PDGEYVRRWLPALSRLPTEYIHAPWKAPASVLAAADVELGCNYPLPIITRSDAKANVDYA 484
Query: 481 LSEMWQQEAASRAAIENG 498
+ + A + +G
Sbjct: 485 CGVLEKSAVAPTGSESSG 502
>gi|407180909|gb|AFT63425.1| cryptochrome 2, partial [Arabidopsis thaliana]
Length = 428
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 243/444 (54%), Positives = 311/444 (70%), Gaps = 26/444 (5%)
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-----NS 177
GI+V+S+N DLLYEPW++ +G+PF +F ++W+KCL M + L PP R+ +
Sbjct: 1 GISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIE-SVMLPPPWRLMPITAAA 59
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
+ C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K
Sbjct: 60 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 119
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
+TS LSP+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY+
Sbjct: 120 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 179
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
FN P++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+
Sbjct: 180 FNFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVI 239
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
VSSF VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG+IPDG DR+DNP +G
Sbjct: 240 VSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGA 299
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
K+DP GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L
Sbjct: 300 KYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELL 359
Query: 478 DEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARR 537
+A+S + ++ I +E + DS ++ ++ I EP P+ +
Sbjct: 360 GKAIS----RTREAQIMIGASPDEIVADSLEA--------LEANTIKEPGL--CPSVSSN 405
Query: 538 YEDQMVPSMT----TSLVRVEEEE 557
DQ VPS + ++ EEEE
Sbjct: 406 --DQQVPSAVRYNGSKRLKPEEEE 427
>gi|343407904|gb|AEM06559.1| cryptochrome 2, partial [Arabidopsis thaliana]
Length = 428
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/418 (56%), Positives = 300/418 (71%), Gaps = 12/418 (2%)
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-----NS 177
GI+V+S+N DLLYEPW++ +G+PF +F ++W+KCL M + L PP R+ +
Sbjct: 1 GISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIE-SVMLPPPWRLMPITAAA 59
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
+ C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K
Sbjct: 60 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVLG 119
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
+TS LSP+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY+
Sbjct: 120 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 179
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
FN P++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+
Sbjct: 180 FNFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVI 239
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
VSSF VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG+IPDG DR+DNP +G
Sbjct: 240 VSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGA 299
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
K+DP GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L
Sbjct: 300 KYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELL 359
Query: 478 DEALSEMWQQEAASRAA---IENGTEEGLGDSSDSAPIAFPPDIQM--EEIPEPARNN 530
+A+S + + AA I + E LG ++ P P + +++P R N
Sbjct: 360 AKAISRTREAQIMIGAAPDEIVADSFEALGANTIKEP-GLCPSVSSNDQQVPSAVRYN 416
>gi|343407884|gb|AEM06549.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407914|gb|AEM06564.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407954|gb|AEM06584.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407966|gb|AEM06590.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407968|gb|AEM06591.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407976|gb|AEM06595.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407996|gb|AEM06605.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408000|gb|AEM06607.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408078|gb|AEM06646.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408134|gb|AEM06674.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408136|gb|AEM06675.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408158|gb|AEM06686.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408206|gb|AEM06710.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180907|gb|AFT63424.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180915|gb|AFT63428.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180917|gb|AFT63429.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180923|gb|AFT63432.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180925|gb|AFT63433.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181037|gb|AFT63489.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181039|gb|AFT63490.1| cryptochrome 2, partial [Arabidopsis thaliana]
Length = 428
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 243/444 (54%), Positives = 311/444 (70%), Gaps = 26/444 (5%)
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-----NS 177
GI+V+S+N DLLYEPW++ +G+PF +F ++W+KCL M + L PP R+ +
Sbjct: 1 GISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIE-SVMLPPPWRLMPITAAA 59
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
+ C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K
Sbjct: 60 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 119
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
+TS LSP+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY+
Sbjct: 120 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 179
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
FN P++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+
Sbjct: 180 FNFPFTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVI 239
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
VSSF VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG+IPDG DR+DNP +G
Sbjct: 240 VSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGA 299
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
K+DP GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L
Sbjct: 300 KYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELL 359
Query: 478 DEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARR 537
+A+S + ++ I +E + DS ++ ++ I EP P+ +
Sbjct: 360 GKAIS----RTREAQIMIGASPDEIVADSLEA--------LEANTIKEPGL--CPSVSSN 405
Query: 538 YEDQMVPSMT----TSLVRVEEEE 557
DQ VPS + ++ EEEE
Sbjct: 406 --DQQVPSAVRYNGSKRLKPEEEE 427
>gi|343407874|gb|AEM06544.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407878|gb|AEM06546.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407882|gb|AEM06548.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407886|gb|AEM06550.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407888|gb|AEM06551.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407890|gb|AEM06552.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407892|gb|AEM06553.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407894|gb|AEM06554.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407896|gb|AEM06555.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407898|gb|AEM06556.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407900|gb|AEM06557.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407902|gb|AEM06558.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407906|gb|AEM06560.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407908|gb|AEM06561.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407910|gb|AEM06562.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407918|gb|AEM06566.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407920|gb|AEM06567.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407922|gb|AEM06568.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407924|gb|AEM06569.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407926|gb|AEM06570.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407928|gb|AEM06571.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407930|gb|AEM06572.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407932|gb|AEM06573.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407934|gb|AEM06574.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407936|gb|AEM06575.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407938|gb|AEM06576.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407940|gb|AEM06577.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407942|gb|AEM06578.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407946|gb|AEM06580.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407948|gb|AEM06581.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407952|gb|AEM06583.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407956|gb|AEM06585.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407958|gb|AEM06586.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407960|gb|AEM06587.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407962|gb|AEM06588.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407964|gb|AEM06589.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407970|gb|AEM06592.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407972|gb|AEM06593.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407974|gb|AEM06594.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407978|gb|AEM06596.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407980|gb|AEM06597.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407984|gb|AEM06599.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407986|gb|AEM06600.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407988|gb|AEM06601.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407990|gb|AEM06602.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407994|gb|AEM06604.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343407998|gb|AEM06606.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408002|gb|AEM06608.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408006|gb|AEM06610.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408008|gb|AEM06611.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408010|gb|AEM06612.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408012|gb|AEM06613.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408014|gb|AEM06614.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408016|gb|AEM06615.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408020|gb|AEM06617.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408022|gb|AEM06618.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408024|gb|AEM06619.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408028|gb|AEM06621.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408030|gb|AEM06622.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408032|gb|AEM06623.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408034|gb|AEM06624.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408036|gb|AEM06625.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408038|gb|AEM06626.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408042|gb|AEM06628.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408044|gb|AEM06629.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408046|gb|AEM06630.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408048|gb|AEM06631.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408050|gb|AEM06632.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408052|gb|AEM06633.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408058|gb|AEM06636.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408060|gb|AEM06637.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408062|gb|AEM06638.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408066|gb|AEM06640.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408068|gb|AEM06641.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408070|gb|AEM06642.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408074|gb|AEM06644.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408076|gb|AEM06645.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408080|gb|AEM06647.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408082|gb|AEM06648.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408084|gb|AEM06649.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408086|gb|AEM06650.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408088|gb|AEM06651.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408090|gb|AEM06652.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408092|gb|AEM06653.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408094|gb|AEM06654.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408096|gb|AEM06655.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408098|gb|AEM06656.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408100|gb|AEM06657.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408102|gb|AEM06658.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408104|gb|AEM06659.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408106|gb|AEM06660.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408108|gb|AEM06661.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408112|gb|AEM06663.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408114|gb|AEM06664.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408116|gb|AEM06665.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408118|gb|AEM06666.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408122|gb|AEM06668.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408124|gb|AEM06669.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408126|gb|AEM06670.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408128|gb|AEM06671.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408132|gb|AEM06673.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408138|gb|AEM06676.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408140|gb|AEM06677.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408142|gb|AEM06678.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408144|gb|AEM06679.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408146|gb|AEM06680.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408150|gb|AEM06682.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408152|gb|AEM06683.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408154|gb|AEM06684.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408160|gb|AEM06687.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408162|gb|AEM06688.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408164|gb|AEM06689.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408166|gb|AEM06690.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408168|gb|AEM06691.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408170|gb|AEM06692.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408172|gb|AEM06693.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408174|gb|AEM06694.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408176|gb|AEM06695.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408178|gb|AEM06696.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408180|gb|AEM06697.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408182|gb|AEM06698.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408184|gb|AEM06699.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408186|gb|AEM06700.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408188|gb|AEM06701.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408190|gb|AEM06702.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408192|gb|AEM06703.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408194|gb|AEM06704.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408196|gb|AEM06705.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408198|gb|AEM06706.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408200|gb|AEM06707.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408202|gb|AEM06708.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408204|gb|AEM06709.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408208|gb|AEM06711.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408210|gb|AEM06712.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408212|gb|AEM06713.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408216|gb|AEM06715.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408218|gb|AEM06716.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408224|gb|AEM06719.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408226|gb|AEM06720.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408228|gb|AEM06721.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408230|gb|AEM06722.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408232|gb|AEM06723.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408234|gb|AEM06724.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408236|gb|AEM06725.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408238|gb|AEM06726.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408240|gb|AEM06727.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408242|gb|AEM06728.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408244|gb|AEM06729.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408246|gb|AEM06730.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180911|gb|AFT63426.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180913|gb|AFT63427.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180919|gb|AFT63430.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180921|gb|AFT63431.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180927|gb|AFT63434.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180929|gb|AFT63435.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180931|gb|AFT63436.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180933|gb|AFT63437.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180935|gb|AFT63438.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180937|gb|AFT63439.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180939|gb|AFT63440.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180941|gb|AFT63441.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180943|gb|AFT63442.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180965|gb|AFT63453.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180967|gb|AFT63454.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180969|gb|AFT63455.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180971|gb|AFT63456.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180973|gb|AFT63457.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180975|gb|AFT63458.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180977|gb|AFT63459.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180979|gb|AFT63460.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180981|gb|AFT63461.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180983|gb|AFT63462.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180985|gb|AFT63463.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180987|gb|AFT63464.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180989|gb|AFT63465.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180991|gb|AFT63466.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180993|gb|AFT63467.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180995|gb|AFT63468.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180997|gb|AFT63469.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180999|gb|AFT63470.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181001|gb|AFT63471.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181003|gb|AFT63472.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181005|gb|AFT63473.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181007|gb|AFT63474.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181009|gb|AFT63475.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181011|gb|AFT63476.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181013|gb|AFT63477.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181015|gb|AFT63478.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181017|gb|AFT63479.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181019|gb|AFT63480.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181021|gb|AFT63481.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181023|gb|AFT63482.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181025|gb|AFT63483.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181027|gb|AFT63484.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181029|gb|AFT63485.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181031|gb|AFT63486.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181033|gb|AFT63487.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181035|gb|AFT63488.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181041|gb|AFT63491.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181043|gb|AFT63492.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181045|gb|AFT63493.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181047|gb|AFT63494.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181049|gb|AFT63495.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181051|gb|AFT63496.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407181053|gb|AFT63497.1| cryptochrome 2, partial [Arabidopsis thaliana]
Length = 428
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/418 (56%), Positives = 300/418 (71%), Gaps = 12/418 (2%)
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-----NS 177
GI+V+S+N DLLYEPW++ +G+PF +F ++W+KCL M + L PP R+ +
Sbjct: 1 GISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIE-SVMLPPPWRLMPITAAA 59
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
+ C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K
Sbjct: 60 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 119
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
+TS LSP+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY+
Sbjct: 120 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 179
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
FN P++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+
Sbjct: 180 FNFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVI 239
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
VSSF VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG+IPDG DR+DNP +G
Sbjct: 240 VSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGA 299
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
K+DP GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L
Sbjct: 300 KYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELL 359
Query: 478 DEALSEMWQQEAASRAA---IENGTEEGLGDSSDSAPIAFPPDIQM--EEIPEPARNN 530
+A+S + + AA I + E LG ++ P P + +++P R N
Sbjct: 360 AKAISRTREAQIMIGAAPDEIVADSFEALGANTIKEP-GLCPSVSSNDQQVPSAVRYN 416
>gi|343408072|gb|AEM06643.1| cryptochrome 2, partial [Arabidopsis thaliana]
Length = 428
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/418 (56%), Positives = 300/418 (71%), Gaps = 12/418 (2%)
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-----NS 177
GI+V+S+N DLLYEPW++ +G+PF +F ++W+KCL M + L PP R+ +
Sbjct: 1 GISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIE-SVMLPPPWRLMPITAAA 59
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
+ C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K
Sbjct: 60 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 119
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
+TS LSP+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY+
Sbjct: 120 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 179
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
FN P++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+
Sbjct: 180 FNFPFTHEQSLLSHLQFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVI 239
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
VSSF VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG+IPDG DR+DNP +G
Sbjct: 240 VSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGA 299
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
K+DP GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L
Sbjct: 300 KYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELL 359
Query: 478 DEALSEMWQQEAASRAA---IENGTEEGLGDSSDSAPIAFPPDIQM--EEIPEPARNN 530
+A+S + + AA I + E LG ++ P P + +++P R N
Sbjct: 360 AKAISRTREAQIMIGAAPDEIVADSFEALGANTIKEP-GLCPSVSSNDQQVPSAVRYN 416
>gi|343408018|gb|AEM06616.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|343408148|gb|AEM06681.1| cryptochrome 2, partial [Arabidopsis thaliana]
Length = 428
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 245/444 (55%), Positives = 310/444 (69%), Gaps = 26/444 (5%)
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-----NS 177
GI+V+S+N DLLYEPW++ +G+PF +F ++W+KCL M + L PP R+ +
Sbjct: 1 GISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSTE-SVMLPPPWRLMPITAAA 59
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
+ C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K
Sbjct: 60 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVG 119
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
+TS LSP+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY+
Sbjct: 120 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 179
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
FN P++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+
Sbjct: 180 FNFPFTHEQSLLSHLRFFPWDADVEKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVI 239
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
VSSF VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG+IPDG DR+DNP +G
Sbjct: 240 VSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGA 299
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
K+DP GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L
Sbjct: 300 KYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELL 359
Query: 478 DEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARR 537
+A+S + + AA +E + DS ++ + I EP P+ +
Sbjct: 360 AKAISRTREAQIMIGAA----PDEIVADSFEA--------LGANTIKEPGL--CPSVSSN 405
Query: 538 YEDQMVPSMT----TSLVRVEEEE 557
DQ VPS + V+ EEEE
Sbjct: 406 --DQQVPSAVRYSGSKRVKPEEEE 427
>gi|343408004|gb|AEM06609.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180945|gb|AFT63443.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180947|gb|AFT63444.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180949|gb|AFT63445.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180951|gb|AFT63446.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180953|gb|AFT63447.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180955|gb|AFT63448.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180957|gb|AFT63449.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180959|gb|AFT63450.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180961|gb|AFT63451.1| cryptochrome 2, partial [Arabidopsis thaliana]
gi|407180963|gb|AFT63452.1| cryptochrome 2, partial [Arabidopsis thaliana]
Length = 428
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 245/444 (55%), Positives = 310/444 (69%), Gaps = 26/444 (5%)
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-----NS 177
GI+V+S+N DLLYEPW++ +G+PF +F ++W+KCL M + L PP R+ +
Sbjct: 1 GISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIE-SVMLPPPWRLMPITAAA 59
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
+ C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K
Sbjct: 60 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 119
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
+TS LSP+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY+
Sbjct: 120 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 179
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
FN P++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+
Sbjct: 180 FNFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVI 239
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
VSSF VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG+IPDG DR+DNP +G
Sbjct: 240 VSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGA 299
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
K+DP GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L
Sbjct: 300 KYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELL 359
Query: 478 DEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTTARR 537
+A+S + + AA +E + DS ++ + I EP P+ +
Sbjct: 360 AKAISRTREAQIMIGAA----PDEIVADSFEA--------LGANTIKEPGL--CPSVSSN 405
Query: 538 YEDQMVPSMT----TSLVRVEEEE 557
DQ VPS + V+ EEEE
Sbjct: 406 --DQQVPSAVHYNGSKRVKPEEEE 427
>gi|343408056|gb|AEM06635.1| cryptochrome 2, partial [Arabidopsis thaliana]
Length = 428
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 236/418 (56%), Positives = 299/418 (71%), Gaps = 12/418 (2%)
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-----NS 177
GI+V+S+N DLLYEPW++ +G+PF +F ++W+KCL M + L PP R+ +
Sbjct: 1 GISVQSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIE-SVMLPPPWRLMPITAAA 59
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
+ C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K
Sbjct: 60 EAIWACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVG 119
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
+TS LSP+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY+
Sbjct: 120 NSTSLLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYIC 179
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
FN P++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+
Sbjct: 180 FNFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVI 239
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
VSSF VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG+IPDG D +DNP +G
Sbjct: 240 VSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDCLDNPALQGA 299
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
K+DP GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L
Sbjct: 300 KYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELL 359
Query: 478 DEALSEMWQQEAASRAA---IENGTEEGLGDSSDSAPIAFPPDIQM--EEIPEPARNN 530
+A+S + + AA I + E LG ++ P P + +++P R N
Sbjct: 360 AKAISRTREAQIMIGAAPDEIVADSFEALGANTIKEP-GLCPSVSSNDQQVPSAVRYN 416
>gi|384248949|gb|EIE22432.1| hypothetical protein COCSUDRAFT_1729, partial [Coccomyxa
subellipsoidea C-169]
Length = 469
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 238/473 (50%), Positives = 324/473 (68%), Gaps = 16/473 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
++WFRRDLRV DNPAL A V+A + V++WAPEEEG + PGR SRWWL SL L+ L
Sbjct: 1 LLWFRRDLRVSDNPALIAAVQAATTVPVYVWAPEEEGQFQPGRCSRWWLHQSLKALEKDL 60
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQ-----LFFNHLYDPLSLVRDHRAKEALTAQ 122
++LGTS+V +RS +S +L+++V+ TGA +FFNHLYDP+SLVRD+ K A+
Sbjct: 61 QALGTSMVYRRSPESRIALIQLVEETGAQASPSPAVFFNHLYDPISLVRDNEVKAAMQGL 120
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS--GDM 180
+ +SFN DLLYEPW+V G+P +FA+FW + +MP+ P PL P I++ ++
Sbjct: 121 SVHCQSFNGDLLYEPWEVLAEGGRPVTSFASFWSRVQNMPYPPPIPLPVPAAISAVPPEI 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
D+L E+ SNA L W+PG A L F+ L +S +R K D +T
Sbjct: 181 VGLELDSLGLMSPEEQQSNAQLYHCWAPGGKGAHALLEKFVRERLRTFSAHRSKTDREST 240
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGD--ESVNLFLKSIGLREYSRYMSF 298
S LSPH+H+GE+S R ++++ R + A G AG+ +S F++ +G REY+RY+SF
Sbjct: 241 STLSPHVHYGEISNRHIYYVKRQE----AKLGAMAGEWHDSTADFVRQMGYREYARYLSF 296
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKA---WRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+ P++HER LL HL+ W D+ +FKA WRQGRTGYPLVDAGMR+LW++GW+H+RIR
Sbjct: 297 HFPFTHERSLLEHLRAAPWNFDQRHFKACPAWRQGRTGYPLVDAGMRQLWSSGWVHNRIR 356
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
VV +SF VK L LPW+WG+K++WD LLDADLE ALGWQYISG + D F + + + E
Sbjct: 357 VVCASFLVKNLLLPWQWGLKHYWDALLDADLECAALGWQYISGCLADAHPFSYMLDHKKE 416
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
+FDP G+YVRRWLP LAR+P ++IH PW APE VL+ AG+ELGSNYP+PI+
Sbjct: 417 SLRFDPEGKYVRRWLPVLARVPVKYIHRPWEAPEHVLEDAGVELGSNYPYPII 469
>gi|302851497|ref|XP_002957272.1| Deoxyribodipyrimidine photolyase, class 1 [Volvox carteri f.
nagariensis]
gi|300257367|gb|EFJ41616.1| Deoxyribodipyrimidine photolyase, class 1 [Volvox carteri f.
nagariensis]
Length = 914
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 239/482 (49%), Positives = 313/482 (64%), Gaps = 5/482 (1%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFRRDLRV+DNPAL A + A VI VFIWAPEEEG + PGR SRWW KHSL L
Sbjct: 16 AVVWFRRDLRVDDNPALEAALNAAATVIPVFIWAPEEEGQFQPGRCSRWWTKHSLVDLQQ 75
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L +LG+ L+ +RSTDS + LL+VV A +FFNHLYDP+SL+RDH K L A G+A
Sbjct: 76 ALAALGSRLIIRRSTDSTAELLKVVGEVRAEAVFFNHLYDPISLMRDHDCKRGLAAAGVA 135
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM---SR 182
R+FN D+LYEPW+V D QP++TF FW +M P P+ P + S
Sbjct: 136 HRTFNGDMLYEPWEVLDVNKQPYSTFDDFWNSVRAMTVPPPFPMAAPAAMPPVPAFVPSL 195
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
S+ F ++ S+ L W PG A L F+ L + +R K D +TS
Sbjct: 196 MVSEVDWFFTAEQEASSDQLKFKWKPGVGGAIAELERFVTERLHVFEHDRAKVDRDSTSR 255
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSP +H G +SVR +F+ +R Q W G S + FL+ +G REYSRY+SF+ P+
Sbjct: 256 LSPWIHIGSISVRYIFYRIRQCQAEWLAAGVDR-TRSCDDFLQQVGYREYSRYLSFHFPF 314
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
HER LL HL+ W +D+ FKAWRQG+TGYP+VDA MR+LW++GW H+R RVV +SF
Sbjct: 315 IHERSLLRHLRACPWRIDQHAFKAWRQGQTGYPIVDAAMRQLWSSGWCHNRARVVAASFL 374
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L LPW+WG+K++WD +DADLE DALGWQY+SG + D F + + + E +FDP+
Sbjct: 375 VKNLLLPWQWGLKHYWDAQIDADLECDALGWQYVSGGMSDAHPFSYMMDLEKEARRFDPD 434
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
GEYVRRWLP L+RLPTE+IH PW AP VL AA +ELG NYP PI+ + A+ ++ A S
Sbjct: 435 GEYVRRWLPVLSRLPTEYIHGPWKAPPQVLAAADVELGCNYPAPIISHNDARVNVEYACS 494
Query: 483 EM 484
+
Sbjct: 495 VL 496
>gi|166007599|gb|ABY77633.1| At1g04400-like protein [Arabidopsis lyrata]
Length = 450
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 201/300 (67%), Positives = 240/300 (80%)
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K +TS
Sbjct: 25 CSIEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVVGNSTSL 84
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSP+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY+ FN P+
Sbjct: 85 LSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNFPF 144
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 145 THEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFA 204
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG+IPDG DR+DNP +G K+DP
Sbjct: 205 VKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYDPE 264
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L +A+S
Sbjct: 265 GEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKAIS 324
>gi|224032111|gb|ACN35131.1| unknown [Zea mays]
gi|413953891|gb|AFW86540.1| hypothetical protein ZEAMMB73_862701 [Zea mays]
Length = 495
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 201/344 (58%), Positives = 259/344 (75%), Gaps = 4/344 (1%)
Query: 159 LSMPFDPDAPLLPPKRINS---GDMSRCPSDTLVFEDESE-KGSNALLARAWSPGWSNAD 214
+S+P + L P + + + ++ C D L E + + SNALL+RAWSPGW NA+
Sbjct: 1 MSLPIEISQYLAPTRLVAAPGLANVRCCSIDDLGLESSKDVESSNALLSRAWSPGWRNAE 60
Query: 215 KALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNK 274
L F++ L+EYS++ K +TTS LSP+LHFGE+SVR ++ LV+++QV W NEG
Sbjct: 61 NMLEEFVSYGLLEYSEHGMKVGGSTTSLLSPYLHFGELSVRMIYQLVKMRQVKWQNEGKS 120
Query: 275 AGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGY 334
+ESV LFL+SIG REYSRY+ FN+P++HER LG+LK + W++DEG FK+WRQG TGY
Sbjct: 121 EAEESVRLFLRSIGFREYSRYLCFNYPFTHERSFLGNLKHYPWLLDEGRFKSWRQGMTGY 180
Query: 335 PLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQ 394
PLVDAGMRELWATGW H+RIRV+VSSF VK LQ+PW WGMKYFWD LLDADLESD LGWQ
Sbjct: 181 PLVDAGMRELWATGWTHNRIRVIVSSFAVKFLQIPWIWGMKYFWDVLLDADLESDILGWQ 240
Query: 395 YISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQA 454
YISG++PDG R+DNP+ +G K+DP+GEYVR W+PELAR+PTEWIH PW AP S+LQ
Sbjct: 241 YISGSLPDGHELSRLDNPEVQGQKYDPDGEYVRTWIPELARMPTEWIHSPWAAPNSILQV 300
Query: 455 AGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENG 498
AG+ELG NYP PIV + A+ LD+A+S MWQ + A++ A +G
Sbjct: 301 AGVELGFNYPKPIVELHMARECLDDAISTMWQLDTAAKLAELDG 344
>gi|327342144|gb|AEA50859.1| cry1-1 [Populus tremula]
Length = 268
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/268 (80%), Positives = 234/268 (87%)
Query: 414 FEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAA 473
FEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP PIV IDAA
Sbjct: 1 FEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAA 60
Query: 474 KCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPT 533
K RL+EALSEMWQQEAASRAAIENGTEEGLGDSS+SAPIAFP DI MEE EP RNN P
Sbjct: 61 KVRLEEALSEMWQQEAASRAAIENGTEEGLGDSSESAPIAFPEDILMEENHEPVRNNPPA 120
Query: 534 TARRYEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVL 593
T RRYEDQMVPSMT+S +R+E+EE+S ++RNS + RAEVPR+ NVNQEPRRD LNQG +
Sbjct: 121 TNRRYEDQMVPSMTSSFLRIEDEETSSDVRNSTGDGRAEVPRDVNVNQEPRRDALNQGFV 180
Query: 594 QTVHNNNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDEN 653
QTV NN A FN L N EDSTAESSS+SRRERDGG+VPVWSP TSSYSEQ VGD++
Sbjct: 181 QTVRNNTALSPFNILRGLTNVEDSTAESSSSSRRERDGGIVPVWSPPTSSYSEQFVGDDS 240
Query: 654 GIGTSSSYLQRHPQSHQIMNCRRLSQTG 681
GIG +SSYLQRHPQSHQI+N RRLSQTG
Sbjct: 241 GIGATSSYLQRHPQSHQIINWRRLSQTG 268
>gi|23954322|emb|CAC82537.1| Cryptochrome 2 [Oryza sativa Indica Group]
Length = 433
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 190/363 (52%), Positives = 256/363 (70%), Gaps = 15/363 (4%)
Query: 215 KALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNK 274
K L F++ L+EYSK+ K + ATTS LSP+LHFGEVSVRKV+ LVR++Q+ W NEG
Sbjct: 1 KMLEEFVSHGLLEYSKHGMKVEGATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTS 60
Query: 275 AGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGY 334
+ES++ F++SIGLREYSRY+ FN P++HE+ LLG+LK + W VDE FK+WRQG TGY
Sbjct: 61 EAEESIHFFMRSIGLREYSRYLCFNFPFTHEKSLLGNLKHYPWKVDEERFKSWRQGMTGY 120
Query: 335 PLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQ 394
PLVDAGMRELWATGW H+RIRV++SSF VK L +PW WGMKYFWD LLDADLESD LGWQ
Sbjct: 121 PLVDAGMRELWATGWTHNRIRVIISSFAVKFLLIPWTWGMKYFWDVLLDADLESDILGWQ 180
Query: 395 YISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQA 454
YISG++PDG R+DNP+ +G K+DP+G YVR W+PELAR+PTEWIHHPW+AP +L+
Sbjct: 181 YISGSLPDGHELSRLDNPEVQGQKYDPDGVYVRTWIPELARMPTEWIHHPWDAPSCILEV 240
Query: 455 AGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENG--TEEGLGDSS----- 507
AG+ELG NYP PIV + A+ LD+++S MWQ + A + A +G E+ L +
Sbjct: 241 AGVELGFNYPKPIVDLHIARECLDDSISTMWQLDTAEKLAELDGEVVEDNLSNIKTFDIP 300
Query: 508 -----DSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSLEL 562
+++P A P D + +P + + ++ + S+ ++R + E++ +
Sbjct: 301 KVVLRETSPCALPID---QRVPHASSKDHNLKSKVLKASNRSSICVDMIRSSKMEATSSV 357
Query: 563 RNS 565
NS
Sbjct: 358 ANS 360
>gi|282889865|ref|ZP_06298404.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175848|ref|YP_004652658.1| hypothetical protein PUV_18540 [Parachlamydia acanthamoebae UV-7]
gi|281500439|gb|EFB42719.1| hypothetical protein pah_c004o286 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336480206|emb|CCB86804.1| putative uncharacterized protein [Parachlamydia acanthamoebae UV-7]
Length = 474
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/482 (41%), Positives = 296/482 (61%), Gaps = 18/482 (3%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVW R+DLR+ED+PAL A + G+VI ++IW+P+EEG + G S+WWL HSL L++
Sbjct: 4 VTIVWMRQDLRIEDHPALDAAAQRGSVIPLYIWSPQEEGHWPLGGASKWWLHHSLKSLEN 63
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
LRSLG L+ R S+ L +V+K T A +F++ Y+P ++ RD + K L+ +G+
Sbjct: 64 DLRSLGLPLII-RKGKSLDCLRDVIKETNADAVFWSRRYEPYAIKRDIQVKSKLSEEGLL 122
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
+SF ++LYEPW + + QG+PF F FW+ CL+ P APL P + +
Sbjct: 123 AKSFPGNVLYEPWSIQNKQGKPFQVFTFFWKNCLAKE-QPLAPLSAPIGVKGKIVE---V 178
Query: 186 DTLVFEDESEKGSNAL---LARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
D+L ED + + +A W PG A + L+ F+ G +Y++ R + D S
Sbjct: 179 DSLHIEDLKLLPTTSWDEGIAHTWKPGSVYAKEFLSYFLEGGAHDYNERRDRPDLPGVSR 238
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSP+LHFGE+SVR V W K G + +L+ +G R+++ ++ ++ P
Sbjct: 239 LSPYLHFGEISVRMV----------WDEIVKKLGFQEAEPYLRQLGWRDFAYHLLYHFPK 288
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ E PL +F W ++ K W++G TGYP VDAGMR+LW TGW+H+R R+VV SF
Sbjct: 289 TPEEPLRQEFAYFPWKENKKLLKVWQKGMTGYPFVDAGMRQLWMTGWMHNRARMVVGSFL 348
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L LPW+ G ++FWDTL+DADL ++ LGWQ+++G+ D + RI NP +G KFDP
Sbjct: 349 VKDLLLPWQTGAQWFWDTLVDADLANNTLGWQWVAGSGADAAPYFRIFNPITQGEKFDPE 408
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
G YVR+W+PE+A LP +WIH PW AP VL+ AG++LG YP+PIV D A+ EA
Sbjct: 409 GSYVRKWVPEIANLPDKWIHKPWEAPLDVLEKAGVKLGQTYPYPIVNHDEARLAALEAFE 468
Query: 483 EM 484
E+
Sbjct: 469 EI 470
>gi|406832861|ref|ZP_11092455.1| hypothetical protein SpalD1_14519 [Schlesneria paludicola DSM
18645]
Length = 511
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 205/485 (42%), Positives = 284/485 (58%), Gaps = 31/485 (6%)
Query: 7 SIVWFRRDLRVEDNPALAAGV-RAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S+VWFR DLR++D PAL A V R VI V+IW+P+E+G + PG SRWWL HSL L+
Sbjct: 35 SLVWFRHDLRLQDQPALVAAVARGEPVIPVYIWSPDEDGDWPPGAASRWWLHHSLHQLNE 94
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L LG+ L+ R ++++ LL ++ TGA +++ Y+P ++ RD R K L + +
Sbjct: 95 QLEELGSRLII-RQGNALTELLSLIDDTGADAVYWTRRYEPAAIQRDSRVKTELRQRNVL 153
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSM---------PFDPDAPLLPPKRIN 176
+SFN LL+EPW + QG+P+ F AFW+ CL+ P D +P PK
Sbjct: 154 AQSFNGQLLFEPWQIETKQGRPYQVFTAFWKTCLTQRTPDEPEPAPSDFLSPRPWPKSAK 213
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
D+S P+ + A W PG A + L F+ P+ +Y R
Sbjct: 214 LNDLSLRPT----------IAWDTGFAERWVPGEKAARQELHRFLESPVFDYVTMRDLPA 263
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLV--RIKQVSWANEGNKAGDESVNLFLKSIGLREYSR 294
TS LSPHLHFGE+S R ++H R++Q S S FLK +G RE++
Sbjct: 264 LHGTSRLSPHLHFGEISPRTIWHETQRRLRQHS-------QDPTSAETFLKEVGWREFAH 316
Query: 295 YMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
++ F+ P + PL F W+ D KAW+ G+TGYP+VDAGMRELW TGW+H+R+
Sbjct: 317 HLLFHFPNTPREPLRSEFANFPWINDNPRLKAWQTGQTGYPIVDAGMRELWTTGWMHNRV 376
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R++V+SF VK L +PW+ G ++FWDTL+DADL S+ LGWQ+ +G D F RI NP
Sbjct: 377 RMIVASFLVKDLLIPWQKGAEWFWDTLVDADLASNTLGWQWTAGCGADAAPFFRIFNPVL 436
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
+ KFD G Y+RRW+PEL LPT+WIH PW A +SVL AAG+ + YP PIV D A+
Sbjct: 437 QSQKFDAEGHYIRRWVPELKNLPTKWIHAPWTASQSVLTAAGVTMDQAYPLPIVDHDEAR 496
Query: 475 -CRLD 478
C L+
Sbjct: 497 HCALE 501
>gi|46446306|ref|YP_007671.1| photolyase [Candidatus Protochlamydia amoebophila UWE25]
gi|46399947|emb|CAF23396.1| putative photolyase [Candidatus Protochlamydia amoebophila UWE25]
Length = 471
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 208/481 (43%), Positives = 289/481 (60%), Gaps = 24/481 (4%)
Query: 7 SIVWFRRDLRVEDNPAL-AAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
SIVWFR+D R+EDNPAL AA + G VI VF W E + G S+WWL +SL L +
Sbjct: 5 SIVWFRQDFRLEDNPALNAATQKGGPVIPVFNWVFNPEKEWQLGGASQWWLYYSLISLKN 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L LG SL+ R D + SLLE+ TGA +++N Y+P+ + D + K L QGI
Sbjct: 65 DLSELGLSLII-RKEDPLKSLLEIAHETGADTVYWNRRYEPMLIQDDAKIKTELQKQGIK 123
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPP----KRINSGDMS 181
SFN +LL+EPW + + QG+PF F FW +CL + DP+ PL P K +
Sbjct: 124 AHSFNGNLLFEPWTIANKQGKPFQVFTPFWNQCLKLN-DPEVPLPVPHSLKKFVGQLQTE 182
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
S L+ + + +KG L WSPG +A L + G + +Y R D TS
Sbjct: 183 SIDSLNLLPKIKWDKG----LKEVWSPGAKSAKALLKKGLTGVIDQYLDIRDLPDHDGTS 238
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+LHFGE+S R ++ V+ S EG +L+ IG RE++ ++ ++ P
Sbjct: 239 LLSPYLHFGEISPRMIWQAVKENSTSKGAEG----------YLRQIGWREFAHHLLYHFP 288
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ ++PL FSW D+ KAW++G+TGYP++DAGMR+LW GW+H+R+R++V SF
Sbjct: 289 ETPQKPLRSQFNSFSWKNDKQNLKAWQKGQTGYPIIDAGMRQLWKIGWMHNRVRLIVGSF 348
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L + W G K+FWDTL+DADL ++ +GWQ+I+G D + RI NP +G KFDP
Sbjct: 349 LVKDLMIHWIEGAKWFWDTLVDADLANNTMGWQWIAGCGADAAPYFRIFNPITQGEKFDP 408
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
G YV++W+PEL LP EW+H PW APE +L+ +GIELG NYP PIV + AK R +EAL
Sbjct: 409 EGNYVKKWVPELINLPKEWLHQPWEAPEEILRQSGIELGINYPKPIV--NHAKAR-EEAL 465
Query: 482 S 482
Sbjct: 466 Q 466
>gi|160335010|gb|ABX24913.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335012|gb|ABX24914.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335016|gb|ABX24916.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335018|gb|ABX24917.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335020|gb|ABX24918.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335022|gb|ABX24919.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335024|gb|ABX24920.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335026|gb|ABX24921.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335028|gb|ABX24922.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335030|gb|ABX24923.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335032|gb|ABX24924.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335034|gb|ABX24925.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335036|gb|ABX24926.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335038|gb|ABX24927.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335040|gb|ABX24928.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335042|gb|ABX24929.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335044|gb|ABX24930.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335046|gb|ABX24931.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335048|gb|ABX24932.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335050|gb|ABX24933.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335052|gb|ABX24934.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335056|gb|ABX24936.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335058|gb|ABX24937.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335060|gb|ABX24938.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335062|gb|ABX24939.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335064|gb|ABX24940.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335066|gb|ABX24941.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335070|gb|ABX24943.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335072|gb|ABX24944.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335074|gb|ABX24945.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335076|gb|ABX24946.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335078|gb|ABX24947.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335080|gb|ABX24948.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335082|gb|ABX24949.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335084|gb|ABX24950.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335086|gb|ABX24951.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335088|gb|ABX24952.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335090|gb|ABX24953.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335092|gb|ABX24954.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335094|gb|ABX24955.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335096|gb|ABX24956.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335098|gb|ABX24957.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335100|gb|ABX24958.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335102|gb|ABX24959.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335104|gb|ABX24960.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335106|gb|ABX24961.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335108|gb|ABX24962.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335110|gb|ABX24963.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335112|gb|ABX24964.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335114|gb|ABX24965.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335116|gb|ABX24966.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335118|gb|ABX24967.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335120|gb|ABX24968.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335122|gb|ABX24969.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335124|gb|ABX24970.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335126|gb|ABX24971.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335128|gb|ABX24972.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335130|gb|ABX24973.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335132|gb|ABX24974.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335134|gb|ABX24975.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335136|gb|ABX24976.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335138|gb|ABX24977.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335140|gb|ABX24978.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335142|gb|ABX24979.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335144|gb|ABX24980.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335146|gb|ABX24981.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335148|gb|ABX24982.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335150|gb|ABX24983.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335154|gb|ABX24985.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335156|gb|ABX24986.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335158|gb|ABX24987.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335160|gb|ABX24988.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335162|gb|ABX24989.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335164|gb|ABX24990.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335166|gb|ABX24991.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335168|gb|ABX24992.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335170|gb|ABX24993.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335172|gb|ABX24994.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335174|gb|ABX24995.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335176|gb|ABX24996.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335178|gb|ABX24997.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335180|gb|ABX24998.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335182|gb|ABX24999.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335184|gb|ABX25000.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335186|gb|ABX25001.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335188|gb|ABX25002.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335190|gb|ABX25003.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|261047496|gb|ACX54507.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|261047498|gb|ACX54508.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|261047500|gb|ACX54509.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|261047502|gb|ACX54510.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|261047504|gb|ACX54511.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|261047506|gb|ACX54512.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|261047508|gb|ACX54513.1| cryptochrome 1 [Capsella bursa-pastoris]
Length = 209
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/209 (91%), Positives = 200/209 (95%)
Query: 268 WANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAW 327
WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHERPLLGHLKFF W VDE YFKAW
Sbjct: 1 WANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAW 60
Query: 328 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 387
RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE
Sbjct: 61 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120
Query: 388 SDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNA 447
SDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVRRWLPEL+RLPT+WIHHPWNA
Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNA 180
Query: 448 PESVLQAAGIELGSNYPFPIVRIDAAKCR 476
PESVLQAAGIELGSNYP PIV +D AK R
Sbjct: 181 PESVLQAAGIELGSNYPRPIVGLDEAKAR 209
>gi|220934567|ref|YP_002513466.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219995877|gb|ACL72479.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 483
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 206/482 (42%), Positives = 294/482 (60%), Gaps = 12/482 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+++WFRRDLR+ DNPALA + G VI V+I APEEEG + PG S WWL HSL+ L
Sbjct: 3 TLLWFRRDLRLTDNPALARALEDGEVIPVYIHAPEEEGDWAPGGASLWWLHHSLAALGED 62
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
LR+ G LV ++ S+ +L +++ TGA Q+ +N LY+P + RD K+ L QGI
Sbjct: 63 LRARGVDLVIRQGA-SLETLQALIRETGAQQVLWNRLYEPALIARDTGIKQQLRDQGIRT 121
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
+SFNA LL+EPW V G P+ F FW+ CL + D P+RI G P +
Sbjct: 122 QSFNAALLFEPWTVAKQDGTPYKVFTPFWKACLGLGVPVDV-TPAPERIQ-GPAQLPPGE 179
Query: 187 TL-VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
TL + A W PG + A L F++ + +Y + R + D +S LSP
Sbjct: 180 TLKSLGLLPDIDWAAGFTELWQPGEAGALARLAEFMDEAVADYDEMRNRPDRDGSSRLSP 239
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
+LHFGE+ R+ QV+ G KA + ++ FL+ IG RE++ ++ ++ P + +
Sbjct: 240 YLHFGEIGPRQAAAAC---QVAKDRHGGKAAHQGIDSFLREIGWREFAHHLLYHFPRTSD 296
Query: 306 RPLLGHLKFFSWV-VDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
PL + W +DE +AW++GRTG PLVDA MR LWATGW+H+R+R++V+S K
Sbjct: 297 EPLDPRFRKLPWRELDEETLRAWQRGRTGIPLVDAAMRALWATGWMHNRVRMIVASLLTK 356
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L W G ++FWDTL+DADL + LGWQ+ +G D + R+ NP +G +FDPNG+
Sbjct: 357 NLGAHWLTGARWFWDTLVDADLAGNTLGWQWTAGCGADAAPYFRVFNPVLQGERFDPNGD 416
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
Y+R+W+PELA+LP ++IH PW APE++L+AAG+ LG NYP PIV D A+ R +AL EM
Sbjct: 417 YLRQWVPELAKLPAKYIHRPWEAPEAILKAAGVRLGGNYPRPIV--DLAESR-RQAL-EM 472
Query: 485 WQ 486
W+
Sbjct: 473 WE 474
>gi|160335152|gb|ABX24984.1| cryptochrome 1 [Capsella bursa-pastoris]
Length = 209
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/209 (91%), Positives = 199/209 (95%)
Query: 268 WANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAW 327
WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHERPLLGHLKFF W VDE YFKAW
Sbjct: 1 WANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAW 60
Query: 328 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 387
RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE
Sbjct: 61 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120
Query: 388 SDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNA 447
SDALGWQYI+GT+PD R FDRIDNP FEGYKFDPNGEYVRRWLPEL+RLPT+WIHHPWNA
Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPXFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNA 180
Query: 448 PESVLQAAGIELGSNYPFPIVRIDAAKCR 476
PESVLQAAGIELGSNYP PIV +D AK R
Sbjct: 181 PESVLQAAGIELGSNYPRPIVGLDEAKAR 209
>gi|160335054|gb|ABX24935.1| cryptochrome 1 [Capsella bursa-pastoris]
Length = 206
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/206 (92%), Positives = 198/206 (96%)
Query: 268 WANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAW 327
WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHERPLLGHLKFF W VDE YFKAW
Sbjct: 1 WANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAW 60
Query: 328 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 387
RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE
Sbjct: 61 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120
Query: 388 SDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNA 447
SDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVRRWLPEL+RLPT+WIHHPWNA
Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNA 180
Query: 448 PESVLQAAGIELGSNYPFPIVRIDAA 473
PESVLQAAGIELGSNYP PIV +D A
Sbjct: 181 PESVLQAAGIELGSNYPRPIVGLDEA 206
>gi|345872727|ref|ZP_08824656.1| DNA photolyase FAD-binding [Thiorhodococcus drewsii AZ1]
gi|343918048|gb|EGV28819.1| DNA photolyase FAD-binding [Thiorhodococcus drewsii AZ1]
Length = 477
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 201/475 (42%), Positives = 286/475 (60%), Gaps = 16/475 (3%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
+I+WFRRDLR++DNPALAA + +G V+ V+I AP EE P+ PG SRWWL SL LD
Sbjct: 2 TAILWFRRDLRLDDNPALAAALASGRPVLPVYIHAPHEEAPWAPGAASRWWLHRSLQSLD 61
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
SL+ G+ L R DS++ L +V ATGA ++ +N LYDP RD ++A+ A G+
Sbjct: 62 RSLQDRGSRLWITRG-DSLAELRRIVAATGAAEVHWNRLYDPRIRDRDAAIEQAIRADGL 120
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
S N LL+EPW++ AQGQP+ F+AFW D P P K I + P
Sbjct: 121 HCESHNGSLLFEPWEILTAQGQPYRVFSAFWRNATKRLPDIQ-PTAPTKDIQWTRIE-PP 178
Query: 185 SDTLVFED---ESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
L +D + E +A L W+PG A F++ L Y ++R + D TS
Sbjct: 179 LPGLEIKDLALQPEIAWDAGLQETWTPGEQAAQDMAAHFLDTRLSRYGEDRDRPDMPGTS 238
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSPHLHFGE+S R++ L R + ++ F++ +G RE++ ++ ++ P
Sbjct: 239 RLSPHLHFGEISPRRLLELTRSRVAD-------PSEDPAEPFIREVGWREFAHHLLYHFP 291
Query: 302 YSHERPLLGHLKFFSWVVDE--GYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
+ PL F W DE +AWRQGRTG P+VDAG+RELW TGW+H+R+R++V+
Sbjct: 292 QTPTEPLNPRFAEFPWKQDETDARLQAWRQGRTGIPVVDAGLRELWDTGWMHNRVRMLVA 351
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF K L LPW+ G +FWDTL+DADL S+ LGWQ+ +G D + R+ NP +G +F
Sbjct: 352 SFLTKNLLLPWQKGAVWFWDTLVDADLASNTLGWQWTAGCGADAAPYFRVFNPVLQGQRF 411
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
DP+G Y++RW PELARLP +++H PW AP ++L AAG+ LG +YP P+V + ++
Sbjct: 412 DPDGAYIKRWCPELARLPLKFLHQPWTAPTTILTAAGVTLGVDYPHPMVDLATSR 466
>gi|407781615|ref|ZP_11128833.1| deoxyribodipyrimidine photolyase family protein [Oceanibaculum
indicum P24]
gi|407207832|gb|EKE77763.1| deoxyribodipyrimidine photolyase family protein [Oceanibaculum
indicum P24]
Length = 497
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 199/480 (41%), Positives = 287/480 (59%), Gaps = 12/480 (2%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
++WFR+DLR+ DNPAL A V +G ++ V+I E G + G +RWWL HSL+ L
Sbjct: 23 LLWFRQDLRLADNPALRAAVESGQPILPVYILDDETPGAWAIGGAARWWLHHSLTALSHD 82
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L++LG L+ +R DS + +V+ GAT +++N Y+P + RD K L GI
Sbjct: 83 LKALGAPLILRRG-DSREVIDSLVREAGATAVYWNRCYEPFARKRDEAIKATLKQDGIEA 141
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI--NSGDMSRCP 184
RSFN+ LL+EPW V + G+PF ++AFW CL+ PD PL P+ + S S
Sbjct: 142 RSFNSALLHEPWTVENKSGEPFRVYSAFWRACLAKG-KPDKPLPAPETLVAASAPASDSI 200
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
D + + AW+PG + A + LT F++ + Y R + D TS LS
Sbjct: 201 GDWKLLPTKPNWAKR--FESAWTPGENGAQERLTGFLDEAVNRYKAERDRPDIEATSRLS 258
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
PHLHFGE+ R+++H R A++ N+A E FL +G RE+S ++ +++
Sbjct: 259 PHLHFGEIGPRQIWHATRAAMA--AHDLNEASAEK---FLSEVGWREFSHHLLYHNDALP 313
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
E PL F W ++ AW++G TGYP+VDAGMRELWATGW+H+R+R++V+SF VK
Sbjct: 314 EHPLRPEFADFPWHENDKALTAWQRGLTGYPIVDAGMRELWATGWMHNRVRMIVASFLVK 373
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L +PW+ G +FWDTL+DADL ++A WQ+++G D + RI NP +G KFDP G
Sbjct: 374 DLLIPWQEGEAWFWDTLVDADLANNAASWQWVAGCGADAAPYFRIFNPVLQGEKFDPEGA 433
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
YVRRW+PELA++P IH PW AP+ V++ AG+ LG +YP PIV A+ R +A S +
Sbjct: 434 YVRRWVPELAKMPASHIHKPWLAPDDVMRQAGVTLGKSYPNPIVDHGTARDRALDAFSRI 493
>gi|344341302|ref|ZP_08772223.1| Deoxyribodipyrimidine photo-lyase [Thiocapsa marina 5811]
gi|343798882|gb|EGV16835.1| Deoxyribodipyrimidine photo-lyase [Thiocapsa marina 5811]
Length = 481
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 198/486 (40%), Positives = 293/486 (60%), Gaps = 44/486 (9%)
Query: 8 IVWFRRDLRVEDNPAL-AAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I+WFRRDLR++DNPAL AA + ++ V++ P+ E P+ PG SRWWL SL+ +D +
Sbjct: 6 ILWFRRDLRLDDNPALQAALIDCDRLVPVYVHDPDSEAPWAPGAASRWWLHGSLASMDQA 65
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L++ GT L+ R D+++ L +V ATGAT++ +N LYDP + RD R K+AL A G+
Sbjct: 66 LQTFGTGLLIARG-DALAELRRIVAATGATRIHWNRLYDPTTRDRDGRIKQALRADGLRA 124
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFD----------------PDAPLL 170
S NA LL+EPW++ G+P+ F AFW +C + D PD+ L
Sbjct: 125 ESHNASLLFEPWEIATGTGEPYRVFTAFWRRCGARLSDVGPLPAPTTLPPPPESPDS--L 182
Query: 171 PPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSK 230
P + N + R P DT + E W+PG + A + F+ G + Y+
Sbjct: 183 PLE--NLALLPRIPWDTGLRE-------------TWTPGETAALEQARAFVQGRIQGYAS 227
Query: 231 NRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLR 290
R A TS LS HLHFGE+ R+V +VR + + + V F++ IG R
Sbjct: 228 ARDLPALAGTSALSSHLHFGEIGPRRVLAMVR-------EQWDDPTADPVETFVREIGWR 280
Query: 291 EYSRYMSFNHPYSHERPLLGHLKFFSWVVDEG--YFKAWRQGRTGYPLVDAGMRELWATG 348
E++ ++ +++P++ + PL W ++ +AW++G TG PLVDAGMR+LW TG
Sbjct: 281 EFAHHLIYHYPHTTDEPLDRRFAALPWREEDADRLLRAWQRGETGIPLVDAGMRQLWHTG 340
Query: 349 WLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDR 408
W+H+R+R+VV+SF K L+LPW+ G ++FWDTL+DADL +++LGWQ+ +G D + R
Sbjct: 341 WMHNRVRMVVASFLTKNLRLPWQAGARWFWDTLVDADLAANSLGWQWSAGCGADAAPYFR 400
Query: 409 IDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
I NP +G +FD +G YVRRW PELARLP ++IH PW AP ++L+ AGI LG +YP PIV
Sbjct: 401 IFNPVLQGERFDKSGAYVRRWCPELARLPDKYIHQPWTAPSALLEHAGIRLGRDYPAPIV 460
Query: 469 RIDAAK 474
+ A++
Sbjct: 461 DLKASR 466
>gi|163793481|ref|ZP_02187456.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199]
gi|159181283|gb|EDP65798.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium BAL199]
Length = 484
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 205/486 (42%), Positives = 277/486 (56%), Gaps = 14/486 (2%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHS 59
MS +++WFRRDLR+ DNPAL A VR G V+AV+I E+ G + G SRWWL HS
Sbjct: 8 MSNASPTLLWFRRDLRLADNPALTAAVRRGRPVVAVYILDDEDAGDWASGGASRWWLHHS 67
Query: 60 LSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
L L SLR G+ L+ +R + + L ++ TGA +++N Y+P + RD K +L
Sbjct: 68 LERLAESLRGRGSRLILRRGA-AAAVLDRLISETGAEAVYWNRCYEPWATARDQAIKASL 126
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGD 179
+G VRSFNA LL EPW++ G P+ F FW+ +M DP L P RI + +
Sbjct: 127 RLRGHEVRSFNASLLREPWEIASKVGGPYRVFTPFWKALRAMG-DPGDLLPTPDRIPTLE 185
Query: 180 MSRCPSDTLVFEDESEKGSNAL-LARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
++ D + K A L AW PG + A + L F++G EY+K R +
Sbjct: 186 VAPASDDIDAWALTPSKPDWAFGLRAAWKPGEAAARQRLEAFLDGAAPEYAKRRNFPGTN 245
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LSPHLHFGE+ R+++H A + FL I RE+S ++ F
Sbjct: 246 GTSRLSPHLHFGEIGPRQIWHAASFHHTGMATDQ----------FLSEIAWREFSHHLLF 295
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
+ P PL F W D G AWR G TGYP+VDAGMRELWATGW+H+R+R++V
Sbjct: 296 HFPMLPTTPLRPEFADFQWSDDPGALAAWRHGMTGYPIVDAGMRELWATGWMHNRVRMIV 355
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L LPW+ G ++FWDTL+DADL S++ WQ+++G D F R+ NP +G K
Sbjct: 356 ASFLVKDLLLPWQVGARWFWDTLVDADLASNSASWQWVAGCGSDAAPFFRVFNPSLQGAK 415
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FDP G YVRRW+PE+A LP IH P +A L AGI LG +YP PI+ AA+ R
Sbjct: 416 FDPQGTYVRRWVPEIAGLPDSIIHKPSDARLIDLSDAGIRLGHDYPLPIIDHRAARDRAL 475
Query: 479 EALSEM 484
A +
Sbjct: 476 TAFRSL 481
>gi|344344031|ref|ZP_08774896.1| Deoxyribodipyrimidine photo-lyase [Marichromatium purpuratum 984]
gi|343804315|gb|EGV22216.1| Deoxyribodipyrimidine photo-lyase [Marichromatium purpuratum 984]
Length = 480
Score = 365 bits (938), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 202/481 (41%), Positives = 280/481 (58%), Gaps = 21/481 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
IVWFRRDLR++DNPAL A +RAGA ++ V+I AP+EE P+ PG SRWWL HSL LD +
Sbjct: 6 IVWFRRDLRLDDNPALEAALRAGARILPVYIHAPDEEAPWAPGAASRWWLHHSLESLDGA 65
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
LR+ G L + S++ L + + +GA + +N LYDP + RD K+ L A G+
Sbjct: 66 LRARGARLWIGQGK-SLALLRRLAETSGARAIHWNRLYDPATRARDTEIKQQLRAAGLDC 124
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM---SRC 183
S N LL+EPW+ G P+ F+AFW C + P+ P RI + ++ +
Sbjct: 125 ASHNGALLFEPWEAATGNGGPYKVFSAFWRHCAPRLAEHPDPIAAPARIPTVELDGGATV 184
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
L+ ++G LA W+PG A A F+ GPL Y K R D TS L
Sbjct: 185 AELGLLPRLSWDQG----LAANWTPGEDGARMAAEHFLAGPLGGYGKLRDHPDRPGTSRL 240
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SPHLHFGE+ R++ L R + G A F + +G RE++ ++ ++ P +
Sbjct: 241 SPHLHFGEIGPRRLLALTRAALPAPPTLGEDA-------FARELGWREFAYHLLYHFPQT 293
Query: 304 HERPLLGHLKFFSW--VVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
E PL + W D + W++GRTG PLVDAGMRELW TGW+H+R+R+V +S
Sbjct: 294 PEHPLDARFADYPWREPSDTELLERWQRGRTGIPLVDAGMRELWHTGWMHNRVRMVAASL 353
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L+LPW+ G ++FWDTL+DADL + LGWQ+ +G D + R+ NP +G +FDP
Sbjct: 354 LTKNLRLPWQLGARWFWDTLVDADLACNTLGWQWTAGCGADAAPYFRVFNPVRQGERFDP 413
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
NG+YVRRW PELARLP + + PW A + L AG+ L NYP P+ ID A+ R EAL
Sbjct: 414 NGDYVRRWCPELARLPDKVLQQPWTATNTTLARAGVGLDLNYPAPM--IDLAQSR-REAL 470
Query: 482 S 482
+
Sbjct: 471 A 471
>gi|209965317|ref|YP_002298232.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum
centenum SW]
gi|209958783|gb|ACI99419.1| deoxyribodipyrimidine photolyase family protein [Rhodospirillum
centenum SW]
Length = 489
Score = 365 bits (936), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 201/489 (41%), Positives = 286/489 (58%), Gaps = 9/489 (1%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFR+DLR+ DNPAL+ R+G V+ VF+ + G + PG SRWWL HSL+ L S
Sbjct: 7 LVWFRQDLRLADNPALSDAARSGRPVVPVFVLDDDTPGGWRPGGASRWWLHHSLASLSRS 66
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L + G+ LV +R V+ + E+V+ TGA + +N Y+P + RD R K L A G+ V
Sbjct: 67 LATAGSPLVLRRGRADVA-IGELVRETGAGTVLWNRCYEPWATERDSRLKADLRAAGVEV 125
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC--P 184
+SFN LL EP V A G+P+ F FW S P P+ PL P R+ + + P
Sbjct: 126 KSFNGSLLREPMTVRTAAGEPYRVFTPFWRAVSSSPDWPE-PLAAPDRLEAPPTAPASDP 184
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
++ + + L +AW PG + L F+ G +Y++ R + S TS LS
Sbjct: 185 LESWGLLPTTPDWAGGL-RQAWQPGEAAVAARLRAFLEGAAADYAEGRDRPGSDGTSRLS 243
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
P+LHFGE+S R+V+ R +S ++ ES FL+ +G RE+ + ++ P
Sbjct: 244 PYLHFGEISPRQVWAATRDAMLSGNPPEHRRHAES---FLRELGWREFCYNLLYHFPKLP 300
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
ERPL + F W D +W++GRTGYP+VDAGMR+LW TGW+H+R+R++V SF VK
Sbjct: 301 ERPLNPRFEDFPWQPDSAALDSWQRGRTGYPIVDAGMRQLWTTGWMHNRVRMIVGSFLVK 360
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L LPW+ G ++FWDTL+DADL ++A GWQ+I+G D + R+ NP +G KFDP+G
Sbjct: 361 HLLLPWQEGQRWFWDTLVDADLANNAAGWQWIAGCGADAAPYFRVFNPVLQGGKFDPDGR 420
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
YVRRW+PELA LP IH PW A L+ AGI LG++YP P + + R A + +
Sbjct: 421 YVRRWVPELAALPDTLIHQPWTATAETLRRAGIRLGTDYPAPCIEHKRGRDRALAAFATL 480
Query: 485 WQQEAASRA 493
Q A+ A
Sbjct: 481 RQAGDAADA 489
>gi|390949735|ref|YP_006413494.1| deoxyribodipyrimidine photolyase [Thiocystis violascens DSM 198]
gi|390426304|gb|AFL73369.1| deoxyribodipyrimidine photolyase [Thiocystis violascens DSM 198]
Length = 495
Score = 364 bits (935), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 201/481 (41%), Positives = 288/481 (59%), Gaps = 26/481 (5%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+++WFRRDLR++DNPAL + GA ++ V+I AP+EE P+ PG SRWWL SL LD+
Sbjct: 5 TLLWFRRDLRLDDNPALIHALTTGAPIVPVYIHAPDEEAPWTPGAASRWWLHGSLLALDA 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SL+ G+ L R DS++ L +V ATGAT + +N LYDP + RD K+AL + G+
Sbjct: 65 SLQRFGSRLWIARG-DSLTELRRIVAATGATGVSWNRLYDPATRERDTHIKQALRSDGLR 123
Query: 126 VRSFNADLLYEPWDVND------AQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGD 179
S + LL+EPW++ GQP+ F+AFW C+ P P+ + +G
Sbjct: 124 CESHRSTLLFEPWEIASQTRSASKTGQPYRVFSAFWRACVRE-LSGIRPDPAPESLPAG- 181
Query: 180 MSRCPSDTLVFEDESEKGS---NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
P D L +D + + L W+PG S A T F++ + YS R + D
Sbjct: 182 --FAPVDGLTVDDLGLLPTIPWDQGLRATWTPGESAALARATAFLDARIGAYSVARDRPD 239
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
+ TS LSPHLHFGE+S R++ ++ + G+ A D + + F++ +G RE+S ++
Sbjct: 240 APGTSRLSPHLHFGEISPRRLLAMILDRF------GDPAADPAES-FVRELGWREFSYHL 292
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGY---FKAWRQGRTGYPLVDAGMRELWATGWLHDR 353
++ P + PL F W EG AW++GRTG PLVDAGMRELW TGW+H+R
Sbjct: 293 LYHFPRTPVEPLDPRFADFPWRT-EGVAERLDAWQRGRTGIPLVDAGMRELWHTGWMHNR 351
Query: 354 IRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQ 413
+R+V +S K L+LPW+ G ++FWDTL+DADL S+ GWQ+ +G D + R+ NP
Sbjct: 352 VRMVAASLLTKNLRLPWQVGARWFWDTLVDADLASNTQGWQWTAGCGADAAPYFRVFNPV 411
Query: 414 FEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAA 473
+G +FDP+G YVRRW PELARLP ++IH PW AP +L AA I LG +YP PIV + +
Sbjct: 412 RQGERFDPDGGYVRRWCPELARLPNQYIHQPWTAPPPILMAADIRLGCHYPLPIVDLATS 471
Query: 474 K 474
+
Sbjct: 472 R 472
>gi|431931754|ref|YP_007244800.1| deoxyribodipyrimidine photolyase [Thioflavicoccus mobilis 8321]
gi|431830057|gb|AGA91170.1| deoxyribodipyrimidine photolyase [Thioflavicoccus mobilis 8321]
Length = 479
Score = 361 bits (927), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 189/471 (40%), Positives = 273/471 (57%), Gaps = 15/471 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I+W RRDLR+ DNPAL+ + AG ++ ++I P EEG + G SRWWL HSL+ LD +
Sbjct: 6 ILWLRRDLRLADNPALSRALSGAGRLVPLYIHCPAEEGRWRAGAASRWWLHHSLAALDRA 65
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
R G+ L+ R DS++ L + A GAT++ + Y+P + D R + AL A G+
Sbjct: 66 FRERGSRLLIARGEDSLTELRRIATACGATRICWARRYEPATRATDARTELALRADGLRC 125
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKC---LSMPFDPDAPLLPPKRINSGDMSRC 183
S +LL+EPWD+ P+ F+A+W + L++P AP D+
Sbjct: 126 DSVEGNLLFEPWDLATEANGPYRVFSAYWRRAVTRLTLPVIEPAPTA--LPPAPSDLGAL 183
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
D L + LA AW+PG A + FI+GPL Y+ R + TS L
Sbjct: 184 SVDELGLLPRVRWDTG--LAHAWTPGEDGAQARASAFIDGPLATYAAKRDRPGVLGTSRL 241
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SPHLHFGE+ R++ ++ A+ G + +++ +G RE++ ++ + P++
Sbjct: 242 SPHLHFGEIGPRQLVRMI-------ADRGLVLDEGPAEPYVRELGWREFAYHLIHHFPHT 294
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
+ PL F W DE AW++GRTG PL+DAG+RELW TGW+H+R+R+ +S
Sbjct: 295 TDEPLDERFAAFPWREDETLLAAWQRGRTGIPLIDAGLRELWKTGWMHNRVRMAAASLLT 354
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L+ PW+ G ++FWDTL+DADL S+ LGWQ+ +G D + RI NP +G +FDP G
Sbjct: 355 KNLRQPWQAGARWFWDTLVDADLASNTLGWQWTAGCGADAAPYFRIFNPVRQGERFDPTG 414
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
+YVRRW PELARLP +IH PW AP VL AGI LGS+YP PIV + A++
Sbjct: 415 DYVRRWCPELARLPARFIHQPWAAPAGVLTDAGIRLGSDYPQPIVDLAASR 465
>gi|335425144|ref|ZP_08554132.1| Deoxyribodipyrimidine photo-lyase [Salinisphaera shabanensis E1L3A]
gi|334886580|gb|EGM24937.1| Deoxyribodipyrimidine photo-lyase [Salinisphaera shabanensis E1L3A]
Length = 483
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 197/482 (40%), Positives = 281/482 (58%), Gaps = 13/482 (2%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG--AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
I+WFRRDLR+ DNPAL A + +++ V+I AP E G + PG R WL SL+
Sbjct: 6 IIWFRRDLRLADNPALRAALDDDFDSIVPVYIHAPHELGDWAPGAAQRVWLHDSLAAFSD 65
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L +LG+ LV +R D+ L ++ +GAT +++N LYDPL++ RD + K+ L I
Sbjct: 66 ALEALGSRLVIRRG-DTTDVLDTLIAESGATSVYWNRLYDPLTIARDKKVKQHLADNDIE 124
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
SF A LL+EPW V QG P+ F FW+ + D PL P + SR S
Sbjct: 125 TASFKAHLLHEPWTVETKQGGPYKVFTPFWKAIKNRAVD--TPLAAPDALPEV-WSRIGS 181
Query: 186 DTLV-FEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
++L E + G + + WSPG A + L TF+ L Y + R + TS+LS
Sbjct: 182 ESLASLELRPKIGWDRGIRETWSPGEDGAHERLETFLADALKTYDEARDEPARPGTSYLS 241
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGN--KAGDESVNLFLKSIGLREYSRYMSFNHPY 302
PHLH+GE+ R++ H V W ++ K + FL IG RE++ ++ ++ P
Sbjct: 242 PHLHWGEIGPRQIVHRVE----EWLDDHREIKTLRTQADSFLSEIGWREFAHHVLYHFPE 297
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ + PL K F W D+ K W+QG+TG P+VDAGMRELWATG++H+R+R+ V+SF
Sbjct: 298 TPDEPLDARFKDFPWSGDDDALKRWQQGQTGIPMVDAGMRELWATGYMHNRLRMTVASFL 357
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
K L++ W+ G ++FW TL+DADL ++ LGWQ+ +G D F RI NP +G +FD
Sbjct: 358 TKNLRVAWQHGERWFWGTLVDADLANNTLGWQWAAGCGADAAPFFRIFNPARQGERFDAK 417
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
GEYVRRW+PELA L IH PWNAP + L+AA I LG +YP PIV + A++ A
Sbjct: 418 GEYVRRWVPELADLDNRHIHEPWNAPANALKAANIVLGDDYPEPIVDLKASRREALAAFD 477
Query: 483 EM 484
E+
Sbjct: 478 EI 479
>gi|344924235|ref|ZP_08777696.1| deoxyribodipyrimidine photo-lyase [Candidatus Odyssella
thessalonicensis L13]
Length = 473
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 196/480 (40%), Positives = 281/480 (58%), Gaps = 17/480 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
IVWFR+DLR+ DNPAL VR A +I +FI E GP+ PG SRWWL HSL L+S
Sbjct: 3 CIVWFRKDLRLTDNPALQEAVRLKAQIIPIFI--LENSGPWQPGGASRWWLHHSLHQLNS 60
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L + + D + LLE++K T AT + +N Y P + D R K L A+GI
Sbjct: 61 AL----NNSMHFYQGDPLPILLELIKQTQATAVVWNRRYGPEEIAVDTRIKTELEARGIG 116
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMP-FDPDAPLLPPKRINSGDMSRCP 184
V+SFN+ LL+EPW++ + QG+ F F FW+KCL+ +P P+ ++ SG
Sbjct: 117 VKSFNSHLLFEPWEIQNNQGKFFQVFTPFWKKCLARARIEPPLPIPANMQLMSGATFDLK 176
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
L+ ++ + L + W+PG A + L FI+ + Y +NR TS LS
Sbjct: 177 KLGLL---PTKPDWASGLRQTWTPGEVGAQQKLANFISR-IAGYKQNRNYPAQQATSLLS 232
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
PHL +GE+SVR+++H + + + A + FL IG RE+S ++ ++ P
Sbjct: 233 PHLAWGEISVRQLWHAIHTQIRLYPVLEQDALN-----FLSEIGWREFSYHLLYHVPTLP 287
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
PL F W DE + W QG+TGYP++DAGMRELW TG++H+R+R++V+SF VK
Sbjct: 288 THPLRQQFANFPWQQDENALRKWSQGQTGYPIIDAGMRELWHTGYMHNRVRMIVASFLVK 347
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L L W+ G +FWDTL+DADL +++ WQ+++G D + R+ NP +G KFDP GE
Sbjct: 348 DLLLSWQQGEAWFWDTLVDADLANNSASWQWVAGCGADAAPYFRVFNPVLQGEKFDPEGE 407
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
YV+RW+PEL L ++IH PW A L+ AGIELG YPFP+V + A+ R E E+
Sbjct: 408 YVKRWVPELDLLSADYIHKPWQASAIKLKGAGIELGVTYPFPMVDHEKARHRALEIYQEL 467
>gi|182414480|ref|YP_001819546.1| deoxyribodipyrimidine photo-lyase [Opitutus terrae PB90-1]
gi|177841694|gb|ACB75946.1| Deoxyribodipyrimidine photo-lyase [Opitutus terrae PB90-1]
Length = 501
Score = 358 bits (918), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 198/482 (41%), Positives = 290/482 (60%), Gaps = 30/482 (6%)
Query: 7 SIVWFRRDLRVEDNPAL-AAGVRAGAVIAVFIWAPEEEGPY------------YPGRVSR 53
+++WFR+DLR++DNPAL AA R G VI V++W E P PG SR
Sbjct: 4 TLLWFRQDLRLQDNPALHAALARGGPVIPVYVWEESCESPAAEGARANDGWAAQPGAASR 63
Query: 54 WWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDH 113
WWL HSL LD+++R G L+ +R D ++ L E+V+ATGA +++N Y+P + RD
Sbjct: 64 WWLHHSLEALDAAVRERGGRLILRRG-DPLAELQEIVRATGAKGVYWNRRYEPAARARDA 122
Query: 114 RAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPK 173
R + L A G+ V++FN+ LL EP + + QG PF F+A+W CL++P + P+
Sbjct: 123 RVQTELAAAGLDVKTFNSALLNEPETILNKQGGPFQVFSAYWRHCLTLP------VAAPR 176
Query: 174 RINSGDM---SRCPS--DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEY 228
++ +G + R P D E + LA+AW+PG ++A K +T F+ G + Y
Sbjct: 177 KLPAGPIPAPERWPRSLDVAALELRPRVAWDRGLAQAWTPGEASAAKRMTRFVAGAIDRY 236
Query: 229 SKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIG 288
+ R TS LS LH+GE+S R+++ VR + G +FL +G
Sbjct: 237 DEERDFPGCDGTSMLSAALHWGEISPRQLWAAVRGRS---RESGVFPPSNGARIFLAELG 293
Query: 289 LREYSRYMSFNHPYSHERPLLGHLKFFSWVVD-EGY-FKAWRQGRTGYPLVDAGMRELWA 346
RE++ ++ ++ P++ E+PL FSW D EG +AW++G+TGYP+VDAGMR+LW
Sbjct: 294 WREFAYHLLWHFPHTIEQPLRRAFARFSWAEDPEGRRLRAWQRGQTGYPIVDAGMRQLWQ 353
Query: 347 TGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAF 406
TGW+H+R+R++V+SF VK L+L W G +FWDTL+DADL ++ LGWQ+ +G D +
Sbjct: 354 TGWMHNRVRMIVASFLVKHLRLSWPHGATWFWDTLVDADLANNTLGWQWSAGCGADAAPY 413
Query: 407 DRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFP 466
RI P +G KFD +G YVRRW+PELARLP ++H PW A L AAG+ LG NYP P
Sbjct: 414 FRIFAPVLQGRKFDSDGVYVRRWVPELARLPDRFLHAPWTATAQTLAAAGVRLGENYPRP 473
Query: 467 IV 468
+V
Sbjct: 474 VV 475
>gi|392382530|ref|YP_005031727.1| deoxyribodipyrimidine photo-lyase [Azospirillum brasilense Sp245]
gi|356877495|emb|CCC98335.1| deoxyribodipyrimidine photo-lyase [Azospirillum brasilense Sp245]
Length = 485
Score = 357 bits (917), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 197/483 (40%), Positives = 272/483 (56%), Gaps = 17/483 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFR DLR+ DNPAL+A GA VI V+I + P+ PG SRWWL SL L +
Sbjct: 9 LVWFRSDLRLADNPALSAAAEDGAPVIPVYIREKDAHDPWLPGAASRWWLHGSLERLGKA 68
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L LG+ LV RS D S L + + TGA + N P ++ RD R E L+A+G+ V
Sbjct: 69 LAKLGSPLVL-RSGDPASVLAALAEETGADTVLCNRRAGPTAIARDRRVGERLSARGVTV 127
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPD---AP--LLPPKRINSGDMS 181
NA LLYEP + PF F FW+ LSMP P AP L PP + S S
Sbjct: 128 HPHNAALLYEPGTIRTKSDTPFRVFTPFWKALLSMPEPPRPTRAPGKLTPPAKPVS---S 184
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
D + + L W+PG A + L F++GP+ Y R + D TS
Sbjct: 185 ESLKDWCLLPSAPDWAGG--LRERWTPGEEAARERLADFLDGPVAAYPAERDRPDHDGTS 242
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
+SPHL FGE+ R+++H R + AG E+ FL+ +G RE++ ++ P
Sbjct: 243 AMSPHLAFGEIGPRQIWHAAR--HAADQRHELAAGAEA---FLRELGWREFNHHLLREEP 297
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ PL F W D+ +AW+ GRTGYP+VDAGMR+LW TGW+H+R+R++V SF
Sbjct: 298 GIPDTPLDTRFARFPWRTDKAGLRAWQSGRTGYPIVDAGMRQLWQTGWMHNRVRMIVGSF 357
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
+K L +PW+ G +FWDTL+DAD+ ++A WQ+++G D F R+ NP +G KFDP
Sbjct: 358 LIKDLLIPWQEGESWFWDTLVDADIANNAGNWQWVAGCGADAAPFFRVFNPILQGEKFDP 417
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
G YVRR++PEL LP WIH PW AP+ L+ AG++LG +YP P++ A+ R A
Sbjct: 418 EGAYVRRYVPELEALPNRWIHKPWEAPDEALRQAGVKLGKDYPRPVIDHGTARDRALAAF 477
Query: 482 SEM 484
E+
Sbjct: 478 QEI 480
>gi|254445216|ref|ZP_05058692.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
DG1235]
gi|198259524|gb|EDY83832.1| deoxyribodipyrimidine photolyase family [Verrucomicrobiae bacterium
DG1235]
Length = 472
Score = 357 bits (917), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 198/490 (40%), Positives = 284/490 (57%), Gaps = 28/490 (5%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHS 59
MS IVWFRRDLR+ DNPAL+ + +G V+ V+++ E EG G S+WWL HS
Sbjct: 1 MSDASPVIVWFRRDLRLADNPALSEALASGEPVLPVYVFDEEGEGDSPDGAASKWWLHHS 60
Query: 60 LSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
L+ LD SL+ LG+ LV R + S S+L+E+ + GA +F+N Y+P + RD K++L
Sbjct: 61 LASLDESLKGLGSRLVLLRGS-SKSALVELCREMGARAVFWNRRYEPAVVERDTEIKKSL 119
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSM----PF-DPDAPLLPPKR 174
G+ RSFN L+ P V + G PF F FW+ ++ P PDA L PK
Sbjct: 120 VDCGVQARSFNGSLMQSPLSVANKSGTPFKVFTPFWKHIQNLSTRTPLAKPDA-LTTPKS 178
Query: 175 INSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRK 234
+ G+ S L+ G N W PG A+KAL+ F G +Y+K+R
Sbjct: 179 LPKGE--SLESFELLPRLSWADGFN----EEWIPGEKGAEKALSLFAKGGAAKYAKDRDT 232
Query: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSR 294
S LSPHLHFGE+S +++H + K+ +L+ I RE++
Sbjct: 233 PSVRGVSRLSPHLHFGEISPNQIWHALDRKKH--------------EPYLRQIAWREFAH 278
Query: 295 YMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
++ F+ + PL F W + G+ KAW+ G+TGYP+VDAGMRELW TGW+H+R+
Sbjct: 279 HLLFHFKDTPSEPLRPEFAAFPWTRNPGWLKAWQTGQTGYPIVDAGMRELWQTGWMHNRV 338
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R++ SSF VK L PW+ G +FWDTL+DADL ++ +GWQ+++G D + RI NP
Sbjct: 339 RMIASSFLVKHLLQPWQDGAAWFWDTLVDADLANNTMGWQWVAGCGADAAPYFRIFNPIT 398
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
+G +FD +G Y RRW+PELARLP +++ PW AP ++L+ AG++LG NYP PIV A+
Sbjct: 399 QGERFDGDGTYTRRWMPELARLPNKYLFKPWEAPAALLEKAGVDLGGNYPMPIVDHGKAR 458
Query: 475 CRLDEALSEM 484
+A +EM
Sbjct: 459 KAALDAYAEM 468
>gi|374851431|dbj|BAL54391.1| deoxyribodipyrimidine photo-lyase [uncultured gamma
proteobacterium]
Length = 491
Score = 355 bits (912), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 202/479 (42%), Positives = 281/479 (58%), Gaps = 23/479 (4%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHS 59
M+ + ++VWFRRDLR+ DNPAL A + + A V+ V++ APEEE P+ PG SRWWL S
Sbjct: 1 MNRKNAALVWFRRDLRLTDNPALIAALTSHADVVPVYLHAPEEEAPWQPGAASRWWLHQS 60
Query: 60 LSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
LS L+ SLR G+ L+ R ++ SLL + + TGA +++N L DP RD + AL
Sbjct: 61 LSQLEQSLRERGSRLII-RLGPTLESLLALCQETGAAAVYWNRLVDPAVRRRDAQIVRAL 119
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCL--SMPFD--PDAPLLPPKRI 175
+ GI F LL++P + +Q +PF F F+ CL +P D P P LP ++
Sbjct: 120 ESCGIRPLVFEGGLLFDPARLKTSQDRPFRRFTPFYRACLLKGLPTDVQPAPPRLP--KV 177
Query: 176 NSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
G ++ P L E G LA+ W PG + A L F +GPL EY+ R +
Sbjct: 178 PPG-IATVPLAAL--ELMPRIGWYRGLAQTWRPGEAGALARLEAFRSGPLAEYASLRDRP 234
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
D TS LSPHLHFGE+S ++V + A S FL+ + RE+S +
Sbjct: 235 DLPATSRLSPHLHFGEISPKQVAASI------------LASGHSGEAFLRELIWREFSHH 282
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+ ++ P +PL F W V + AW+QG+TG PLVDAGMRELWATGW+H+RIR
Sbjct: 283 LLYHFPKLPGQPLDQRFHAFPWRVAKDALAAWQQGQTGIPLVDAGMRELWATGWMHNRIR 342
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
+V +SF VK L + W+ G ++FWDTL+DADL +++ WQ+++G D F RI NP +
Sbjct: 343 MVAASFLVKNLLISWQEGARWFWDTLVDADLANNSQNWQWVAGCGADAAPFFRIFNPVLQ 402
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
G KFDP G Y+RRW+PELA LP IH PW A + L+ G+ELG NYP PI+ + ++
Sbjct: 403 GRKFDPLGNYIRRWVPELASLPACLIHAPWEADPTELRRYGVELGRNYPHPILDLATSR 461
>gi|323137318|ref|ZP_08072396.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
gi|322397305|gb|EFX99828.1| DNA photolyase, FAD-binding [Methylocystis sp. ATCC 49242]
Length = 472
Score = 354 bits (909), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 201/479 (41%), Positives = 275/479 (57%), Gaps = 21/479 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFR DLR+ DNPAL A R+GA +IA+++ E G + G SRWWL HSL+ L
Sbjct: 5 AVVWFRNDLRLADNPALTAAARSGAPIIALYVLDDESAGEWRMGSASRWWLHHSLTALAH 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L LG +L +R L +V GA +++N LY+P ++ RD K L A+G+
Sbjct: 65 DLARLGVTLTLRRGRAEFV-LENIVADAGAGAVYWNRLYEPWAMRRDSEIKSQLRARGVM 123
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGD--MSRC 183
V SFN LL+EP + + QG+PF F FW CL+ PDAPL PK++ + S
Sbjct: 124 VESFNGSLLFEPGGLRNKQGEPFRVFTPFWRACLAAE-APDAPLPAPKKLTAAPPPASDA 182
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
+D + + + L W G A + L F + +Y +R S +
Sbjct: 183 LADWRLLPTKPDWAGG--LRETWRAGEHAALERLAEFAKKRVRDYKIDRDFMAREGVSRM 240
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SPHLHFGEVS R++ WA AGD +L+ IG RE+ ++ +P
Sbjct: 241 SPHLHFGEVSPRRI----------WAEITEAAGDAGAA-YLREIGWREFCHHLLVANPQM 289
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
ER L + F W D +AWR+G+TGYPLVDA MRELW TG +H+R R+V +SF V
Sbjct: 290 PERALDERFRDFPWREDAAALEAWRRGQTGYPLVDAAMRELWITGNMHNRARMVAASFLV 349
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L +PW+ G ++FWDTL+DADL +++ GWQ+++G D + R+ NP +G KFDP G
Sbjct: 350 KHLLIPWQEGERWFWDTLVDADLANNSGGWQWVAGCGADAAPYFRVFNPVLQGEKFDPEG 409
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
+Y+RR++PELARL IH PW APE VL+AAG+ LG YP PIV D AK R D AL
Sbjct: 410 DYLRRYVPELARLDARHIHCPWEAPEEVLRAAGVRLGETYPRPIV--DHAKAR-DRALK 465
>gi|381158412|ref|ZP_09867645.1| deoxyribodipyrimidine photolyase [Thiorhodovibrio sp. 970]
gi|380879770|gb|EIC21861.1| deoxyribodipyrimidine photolyase [Thiorhodovibrio sp. 970]
Length = 493
Score = 354 bits (909), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 201/498 (40%), Positives = 286/498 (57%), Gaps = 37/498 (7%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+I+WFRRDLR+ DNPAL A + ++ V++ AP+EE P+ PG S WWL HSL LD+
Sbjct: 5 AILWFRRDLRLSDNPALMAALDGCERLLPVYLHAPDEEAPWSPGAASNWWLHHSLQALDA 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
LR G+ L R DS++ L ++ AT A +F+N Y+P + RD K+ L AQGI
Sbjct: 65 CLRERGSRLFILRG-DSLACLQALITATSARAVFWNRCYEPARIARDSFIKQQLRAQGIR 123
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAP-----LLPP--KRINSG 178
S N LL+EPW++ QPF F+AFW + + + AP +LPP + I SG
Sbjct: 124 CESHNGGLLFEPWEIKTGADQPFKVFSAFWRRATARLAEIPAPSPTPEVLPPLPEAIASG 183
Query: 179 ------DMSRCPSDTLVFEDESEKGS-NALLARAWSPGWSNADKALTTFINGPLIEYSKN 231
++ P + L D + S +A W PG + A L F++ +Y++
Sbjct: 184 RTQLSKSLAEQPLERL---DLLPRISWDAAFPTTWQPGAAGAQARLRRFLDQAAHDYAET 240
Query: 232 RRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLRE 291
R + +S LSPHLHFGE+ R+V GD F++ +G RE
Sbjct: 241 REQPGVEGSSKLSPHLHFGEIGPREVLKAT----------NATVGDHEA--FVRELGWRE 288
Query: 292 YSRYMSFNHPYSHERPLLGHLKFFSW--VVDEGYFKAWRQGRTGYPLVDAGMRELWATGW 349
+S ++ F+ P + E PL F W +AW+QG+TG PL+DAGMRELW +GW
Sbjct: 289 FSVHLLFHFPQTAEVPLNPLFADFPWRDPTPPELLRAWQQGQTGIPLIDAGMRELWHSGW 348
Query: 350 LHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRI 409
+H+R+R++V+SF K L++PW+ G ++FWDTL+DA+L ++ GWQ+ +G D + RI
Sbjct: 349 MHNRVRMIVASFLTKNLRIPWQTGARWFWDTLVDANLANNTQGWQWTAGCGADAAPYFRI 408
Query: 410 DNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVR 469
NP +G +FDP G YVR W PEL RLP ++H PW AP ++LQ +G+ELG YP PI
Sbjct: 409 FNPVRQGERFDPEGVYVRHWCPELTRLPKRYLHAPWTAPVAILQQSGVELGITYPRPI-- 466
Query: 470 IDAAKCRLDEALSEMWQQ 487
ID A R EAL+ WQQ
Sbjct: 467 IDLADTR-REALA-FWQQ 482
>gi|160335068|gb|ABX24942.1| cryptochrome 1 [Capsella bursa-pastoris]
Length = 186
Score = 354 bits (908), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 174/186 (93%), Positives = 181/186 (97%)
Query: 268 WANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAW 327
WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHERPLLGHLKFF W VDE YFKAW
Sbjct: 1 WANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAW 60
Query: 328 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 387
RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE
Sbjct: 61 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120
Query: 388 SDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNA 447
SDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVRRWLPEL+RLPT+WIHHPWNA
Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNA 180
Query: 448 PESVLQ 453
PESVLQ
Sbjct: 181 PESVLQ 186
>gi|374623477|ref|ZP_09695986.1| Deoxyribodipyrimidine photo-lyase [Ectothiorhodospira sp. PHS-1]
gi|373942587|gb|EHQ53132.1| Deoxyribodipyrimidine photo-lyase [Ectothiorhodospira sp. PHS-1]
Length = 485
Score = 350 bits (899), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 199/481 (41%), Positives = 287/481 (59%), Gaps = 23/481 (4%)
Query: 19 DNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTK 77
DNPALA +R+G VI V+I APEEE + PG SRWWL HSL+ S+L + G+ L+ +
Sbjct: 16 DNPALAHALRSGHPVIPVYIHAPEEEASWSPGAASRWWLHHSLTAFSSALDAAGSRLILR 75
Query: 78 RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEP 137
R S+ +LL+++ TGA Q+ +N +Y+P + RD R K AL +G+AV SFN+ LL+EP
Sbjct: 76 RGP-SLETLLQLIDETGARQVLWNRVYEPALIERDRRIKAALKDRGLAVESFNSALLFEP 134
Query: 138 WDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP-SDTLVFEDESEK 196
W V++ G+P+ F FW+ C +M PD P+ I + +R P +D L F D +
Sbjct: 135 WTVSNKSGEPYRVFTPFWKACCAMGL-PDDVETTPESITAP--TRWPDNDRLEFFDLLPR 191
Query: 197 GS-NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVR 255
+ +A W PG A +AL F+ G ++ Y +R TS +SPHLHFGE+ R
Sbjct: 192 IPWDQGMAACWQPGEDGAHRALERFLAGAVLTYKTDRDLPGQPGTSRMSPHLHFGEIGPR 251
Query: 256 KVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFF 315
+ L+R + A SV F++ IG RE++ ++ F+ P++ E+PL F
Sbjct: 252 Q---LIRACRYLQAQGAGATAGASVETFVREIGWREFAFHLLFHFPHTPEQPLDERFTDF 308
Query: 316 SWVVDEGY---FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRW 372
W Y +AWR+GRTG PLVDAGMRELW TGW+H+R+R++V+S VK L++PW+
Sbjct: 309 PWRDARDYAADLEAWRRGRTGIPLVDAGMRELWHTGWMHNRVRMIVASLLVKNLRIPWQT 368
Query: 373 GMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPE 432
G ++FWDTL+DADL S+ LGWQ+ +G D + R+ NP +G +FD GEYVRRW+PE
Sbjct: 369 GARWFWDTLVDADLASNTLGWQWTAGCGADAAPYFRVFNPVLQGERFDGRGEYVRRWVPE 428
Query: 433 LARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASR 492
L LP ++ PW AP ++ YP P R+D + R AL+ Q + ASR
Sbjct: 429 LKPLPDRYLQAPWTAPAGLVP-------REYPRP--RVDLGESR-KAALAAWEQLKGASR 478
Query: 493 A 493
+
Sbjct: 479 S 479
>gi|347758242|ref|YP_004865804.1| DNA photolyase family protein [Micavibrio aeruginosavorus ARL-13]
gi|347590760|gb|AEP09802.1| DNA photolyase family protein [Micavibrio aeruginosavorus ARL-13]
Length = 476
Score = 350 bits (898), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 196/487 (40%), Positives = 282/487 (57%), Gaps = 34/487 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I+WFR+DLR++DNPA A + +G+ ++ VFI + G + G SRWWL HSLS L+ S
Sbjct: 7 ILWFRQDLRLQDNPAYHAALESGSPILPVFILDDDNAGLWKRGAASRWWLYHSLSSLNKS 66
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L GT + + D+ + E+V+A A +F+N Y+P + RD + K AL IAV
Sbjct: 67 LN--GTLAIFR--GDATKIIPELVEAACAHAVFWNRCYEPWRIARDSKIKTALEQSSIAV 122
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS--------- 177
+S NA LLYEPW V+ G P+ F F+ K +P PL P + +
Sbjct: 123 KSSNASLLYEPWTVSKDDGTPYKVFTPFFRKGCLGRGEPPVPLGLPHHVPTFFPRLKQSL 182
Query: 178 --GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
D+ PS + +KG + + W+PG A + L F++ L Y + R
Sbjct: 183 HIDDLDLLPSI------KWDKGFHDI----WTPGEHGARERLGQFLDHGLKGYKEGRNHP 232
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
D S LSPHLHFGE+S R +H VR A E + + + FL +G RE+S
Sbjct: 233 DRENVSRLSPHLHFGEISPRTAWHAVRH-----AMEADPTIETDGDCFLSELGWREFSYS 287
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+ + HP +PL F W ++ +AW+ G+TGYP+VDAGMR+LW TGW+H+R+R
Sbjct: 288 LLYTHPDLPTQPLQHKFAGFPWDKNDKALRAWQMGKTGYPIVDAGMRQLWQTGWMHNRVR 347
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++V+SF +K L LPW G ++FWDTL+DADL ++A WQ+++G D + RI NP +
Sbjct: 348 MIVASFLIKDLMLPWTAGEEWFWDTLVDADLANNAASWQWVAGCGADAAPYFRIFNPVTQ 407
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFDP+G Y+R ++PELA LP ++IH PW AP +VL+ AG+E+G YP PIV AA+
Sbjct: 408 GTKFDPDGNYIRTFVPELAALPAKYIHEPWTAPANVLKQAGVEMGKTYPMPIVDHKAAR- 466
Query: 476 RLDEALS 482
D AL+
Sbjct: 467 --DHALA 471
>gi|381168517|ref|ZP_09877711.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Phaeospirillum molischianum
DSM 120]
gi|380682377|emb|CCG42529.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Phaeospirillum molischianum
DSM 120]
Length = 482
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 209/489 (42%), Positives = 270/489 (55%), Gaps = 37/489 (7%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFI---WAPEEEGPYYPGRVSRWWLKHSLSH 62
+IVWFRRDLR+ DNPAL +G +I +FI PE E G +RWWL HSL
Sbjct: 5 AIVWFRRDLRLADNPALVEAAASGQPLIPLFIDETGVPEGEAD---GGATRWWLHHSLLS 61
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L L + G L+ +R + ++ L +V ATGAT++ +N Y P +V+D K ALT
Sbjct: 62 LGRDLAARGVPLLLRRG-EPLAVLEALVAATGATRVLWNRRYTPRGVVQDTTIKAALTRH 120
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
GI VRSF A LL+EPW++ G PF F FW CL+ P P +
Sbjct: 121 GIEVRSFKAGLLFEPWEIATRSGTPFRVFTPFWRSCLAAPPPDRPLPPPAALRPCESVP- 179
Query: 183 CPSDTLVFEDESEKGSNALLARA----------WSPGWSNADKALTTFINGPLIEYSKNR 232
P D L GS LL A W PG + A+ L F++ L Y+ R
Sbjct: 180 -PGDDL--------GSWRLLPTAPDWAGGLNADWQPGEAGAEARLQIFLDQRLKAYAVAR 230
Query: 233 RKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREY 292
A TS LSPHL FGE+S R+ FH R A GN ++ FL +G RE+
Sbjct: 231 DLPGQAGTSRLSPHLAFGEISPRRAFHAARDA----AGSGN-----GLDRFLAELGWREF 281
Query: 293 SRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHD 352
++ F P E+PL G F W D AW++GRTG+PLVDAGMRELW TGW+H+
Sbjct: 282 CAHLLFTVPDLPEQPLRGEFAAFPWRDDPELLVAWQRGRTGFPLVDAGMRELWTTGWMHN 341
Query: 353 RIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNP 412
R+R+VV+SF VK L L WR G +F DTL+DADL S+ WQ+++G D F RI NP
Sbjct: 342 RVRMVVASFLVKDLLLSWRLGADWFRDTLVDADLASNVASWQWVAGCGADAAPFFRIFNP 401
Query: 413 QFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDA 472
+G KFDP+G YVRRW PELA LP W+H P A + +L+ AG+ LG +YP PIV D
Sbjct: 402 TLQGEKFDPDGRYVRRWCPELAGLPDRWLHQPGRASDIILRQAGVSLGRSYPHPIVDHDV 461
Query: 473 AKCRLDEAL 481
A+ R A+
Sbjct: 462 ARRRALAAM 470
>gi|289208005|ref|YP_003460071.1| deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. K90mix]
gi|288943636|gb|ADC71335.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio sp. K90mix]
Length = 469
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 199/485 (41%), Positives = 282/485 (58%), Gaps = 29/485 (5%)
Query: 5 GCSIVWFRRDLRVEDNPALAAGV-RAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHL 63
G ++VW R+DLR+ D PAL A V R GAVI VFI AP+E+ + PG S WWL HSL L
Sbjct: 3 GPTLVWLRQDLRLADQPALHAAVERGGAVIPVFIHAPDEDLQWPPGAASNWWLHHSLQSL 62
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
+ +L G+ LV R+ S+ +L E+V TGAT +++N +Y+P ++RD K L A G
Sbjct: 63 NEALNKAGSPLVV-RAGPSLDTLRELVAETGATAVYWNRVYEPARVLRDQGIKAGLRADG 121
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
+ VRSFNA LL EPWDV QG P+ F FW CL + + PL P R+ +
Sbjct: 122 LDVRSFNAALLIEPWDVETGQGGPYRVFTPFWRACLQRGIEQN-PLPAPSRLPAPGK--- 177
Query: 184 PSDTLVFED----ESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
P +L+ +D + L A W+PG A L F+ + Y+ +R + D
Sbjct: 178 PPRSLMLDDLELLPPIDWAGGLRA-TWTPGERGARDRLERFLEQAIAGYADSRDRPDQDG 236
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSPHLHFGEVS R+V +R VS ++G ++ F++ +G R+++ ++ ++
Sbjct: 237 TSRLSPHLHFGEVSPRQVLRALRDAGVSLDHKGPES-------FVRELGWRDFAHHVLYH 289
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P++ E+PL + F W E AW+QGRTG P+VDA MR+LW TGW+H+R+R+VV
Sbjct: 290 FPHTTEQPLNPRFEDFPWRESEADLAAWQQGRTGIPIVDAAMRQLWETGWMHNRLRMVVG 349
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF K L+L W G ++FWDTL+DADL S+ LGWQ+ G D + RI NPQ +G ++
Sbjct: 350 SFLTKNLRLHWGHGARWFWDTLVDADLASNTLGWQWAGGCGADAAPYFRIFNPQRQGEQY 409
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP+G +VR +LP L + T +IH P AG G YP PIV + A++ E
Sbjct: 410 DPDGRFVRSFLPVLKKTETRYIHAP---------GAGGTPG--YPDPIVDLKASRQAALE 458
Query: 480 ALSEM 484
A +
Sbjct: 459 AFEAI 463
>gi|288958781|ref|YP_003449122.1| deoxyribodipyrimidine photo-lyase [Azospirillum sp. B510]
gi|288911089|dbj|BAI72578.1| deoxyribodipyrimidine photo-lyase [Azospirillum sp. B510]
Length = 504
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 204/497 (41%), Positives = 276/497 (55%), Gaps = 24/497 (4%)
Query: 8 IVWFRRDLRVEDNPALAA-----GVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
IVWFR DLR+ DNPAL A G R GAVI ++I E P+ G RWWL SL
Sbjct: 21 IVWFRNDLRLADNPALTAAAQMAGERGGAVIPLYILEEETGDPWTLGGAQRWWLHGSLER 80
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L + G+ LV +R + + L ++ TGA + +N Y P RD K+ L A+
Sbjct: 81 LATCCARHGSPLVLRRG-EPAAVLDALIAETGAGCVLWNRRYAPAQTARDAAIKQGLKAR 139
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKC-----LSMPFDPDAPLLPPKRINS 177
GI RSFNA LL EPW V + G F F FW P A L P +
Sbjct: 140 GIDARSFNAGLLAEPWTVRNKSGGSFKVFTPFWRHLSATLTPPPPTRAPAALKAPATAPA 199
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
GD D + A L + W PG + A L F++GP+ Y+ R + D
Sbjct: 200 GDALEGWGLPPTAPDWA-----AGLRKRWVPGETAALSHLADFLDGPVGVYATERDRPDR 254
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
TS LSPHL FGE+ R+V+H R + ++ FL+ +G RE+ ++
Sbjct: 255 HGTSTLSPHLAFGEIGPRQVWHAARHAAEARPELA-----AGIDFFLREVGWREFQYHLL 309
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
+ P ERPL F W D +AWR+GRTGYP+VDAGMR+LW TGW+H+R+R++
Sbjct: 310 HHAPELPERPLDPRFADFPWREDAAGLQAWRRGRTGYPIVDAGMRQLWETGWMHNRVRMI 369
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V+SF VK L LPW+ G ++FWDTL+DADL +A WQ+++G D F R+ NP +G
Sbjct: 370 VASFLVKDLLLPWQEGERWFWDTLVDADLAQNAGNWQWVAGCGADAAPFFRVFNPVLQGE 429
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
KFDP+G+YVRR++PEL RLP WIH PW AP +L+ AGI LG++YP PI+ AA+
Sbjct: 430 KFDPDGDYVRRYVPELDRLPPRWIHQPWTAPTEILRQAGIRLGADYPRPILDHGAAR--- 486
Query: 478 DEALSEMWQQEAASRAA 494
D AL+ +++A + AA
Sbjct: 487 DRALALYNERKAKAGAA 503
>gi|325110039|ref|YP_004271107.1| deoxyribodipyrimidine photo-lyase type I [Planctomyces brasiliensis
DSM 5305]
gi|324970307|gb|ADY61085.1| deoxyribodipyrimidine photo-lyase type I [Planctomyces brasiliensis
DSM 5305]
Length = 502
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 188/487 (38%), Positives = 277/487 (56%), Gaps = 22/487 (4%)
Query: 5 GCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
G +VW R+DLR+ DNPAL A G + V P ++PG + WWL HSL L
Sbjct: 25 GPVLVWLRQDLRLRDNPALYAAANTGRSVIVVYLLPNRNDDWFPGGAASWWLHHSLDALT 84
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
++L L+ RS + + + + + A +F+N Y+P RD + + L G
Sbjct: 85 TNLHKRHHQLIL-RSGSAATEMTRLAEDCKAAAVFWNRCYEPADRERDEKTADKLAQAGY 143
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM---S 181
VRSF LL EPW ++ QG P+ F FW+ S + +PL P+ + + D S
Sbjct: 144 QVRSFPGSLLIEPWTLSTKQGDPYQVFTPFWKAARSR-VEFASPLPAPESLKTPDQWPDS 202
Query: 182 RCPSD-----TLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
+D TL + DE W PG A A F++ + EY R
Sbjct: 203 EELADWKLLPTLDWADE--------FPERWKPGEDAAHAAWQKFLDDNIAEYGTERDVPS 254
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LSPHLH+GE+S R+++ +++++ ++ +++VN++L IG RE+ ++
Sbjct: 255 HHGTSRLSPHLHYGEISPRQIYAEA-VEKMNRKQTATESFEKNVNVYLSEIGWREFGYHV 313
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
++ P++ E PL F+W + + KAW+QG+TGYP+VDAGMRELW TGW+H+R+R+
Sbjct: 314 LYHFPHTPENPLREKFADFNWETKKSWLKAWQQGQTGYPIVDAGMRELWRTGWMHNRVRM 373
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+V+SF K L++ W G K+FWDTL+DADL ++ LGWQ+ SG D + R+ NP +
Sbjct: 374 IVASFLTKDLRIHWLEGSKWFWDTLVDADLANNTLGWQWASGCGADAAPYFRVFNPTRQS 433
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFDP G Y+RRW PELA LP +++H P +APESVL AG+ LG +YP PIV D A+ R
Sbjct: 434 EKFDPKGNYLRRWCPELADLPDKYLHCPADAPESVLNKAGVRLGKDYPEPIV--DHAEQR 491
Query: 477 LDEALSE 483
D AL+E
Sbjct: 492 -DAALAE 497
>gi|114321405|ref|YP_743088.1| deoxyribodipyrimidine photo-lyase type I [Alkalilimnicola ehrlichii
MLHE-1]
gi|114227799|gb|ABI57598.1| deoxyribodipyrimidine photo-lyase type I [Alkalilimnicola ehrlichii
MLHE-1]
Length = 479
Score = 342 bits (876), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 198/492 (40%), Positives = 281/492 (57%), Gaps = 38/492 (7%)
Query: 6 CSIVWFRRDLRVEDNPAL-AAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
++VW RRDLR+ DNPAL A R G VIAV++ APEE Y PG S W+L HSL L
Sbjct: 4 ATLVWLRRDLRLTDNPALDQAARRGGPVIAVYLHAPEETPQYPPGAASHWYLHHSLKALG 63
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+L G LV +R ++++L +++ATGA +++N LY+P ++ RD K+AL +G+
Sbjct: 64 PALAQAGIPLVLRRGP-ALATLRALIRATGAGAVYWNRLYEPDAVARDRTVKQALRTEGL 122
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKC------------LSMPFDPDAPLLPP 172
RSF LL+EPW V + +P+ F FW C + P +
Sbjct: 123 DCRSFPTALLHEPWAVRNQADRPYRAFTPFWRACRRQPPPAAPLPAPDLRDRPVPAVEGL 182
Query: 173 KRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNR 232
G + R P DT + + G +A LAR L F L Y+++R
Sbjct: 183 DLAALGLLPRTPWDT-GLRNTWQAGESAALAR------------LEAFAADRLARYAQDR 229
Query: 233 RKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREY 292
+ TS LSP LHFGE+S R+V+ QV A E D + FL +G RE+
Sbjct: 230 DRPAEPGTSGLSPALHFGELSPRQVWW-----QVMAAREAGVPED-ACETFLSELGWREF 283
Query: 293 SRYMSFNHPYSHERPLLGHLKFFSWVVD--EGYFKAWRQGRTGYPLVDAGMRELWATGWL 350
+ ++ ++HP + P+ F W D +G+ AW+ GRTG PLVDAGM ELW TGW+
Sbjct: 284 AHHLLWSHPDLGDAPVDDRFGAFPWRPDPGDGWLHAWQAGRTGIPLVDAGMHELWQTGWM 343
Query: 351 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRID 410
H+R+R+V SF VK L+LPW+ G ++F DTL+D D S+A+GWQ+++G D + RI
Sbjct: 344 HNRVRMVTGSFLVKHLRLPWQRGERWFRDTLVDWDAASNAMGWQWVAGCGADAAPYFRIF 403
Query: 411 NPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRI 470
NP +G +FDP G YVRRWLP LA LP ++IH PW APE+VL+ AG+ LGS+YP P++ +
Sbjct: 404 NPVRQGERFDPQGRYVRRWLPALANLPDKYIHAPWTAPEAVLRRAGVTLGSDYPCPLIDL 463
Query: 471 DAAKCRLDEALS 482
+ ++ALS
Sbjct: 464 RLGR---EQALS 472
>gi|48716245|dbj|BAD23781.1| putative cryptochrome 2 [Oryza sativa Japonica Group]
Length = 298
Score = 340 bits (872), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 161/298 (54%), Positives = 210/298 (70%), Gaps = 4/298 (1%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
M+G ++VWFRRDLR++DNPALA+ R GAV+ VFIW P +EG +YPGR SRWWLK SL
Sbjct: 1 MAGSERTVVWFRRDLRIDDNPALASAARDGAVLPVFIWCPADEGQFYPGRCSRWWLKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
HL SL SLG LV R+ ++ +LL + + GAT+L +NHLYDP+SLVRD + K+ L+
Sbjct: 61 PHLSQSLESLGCPLVLIRAESTLEALLRCIDSVGATRLVYNHLYDPVSLVRDDKIKKELS 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI---NS 177
A GI+++SFN DLLYEPW++ D G F TF +WEKC+ +P D L P K +
Sbjct: 121 ALGISIQSFNGDLLYEPWEIYDDSGLAFTTFNMYWEKCMELPIDASPSLAPWKLVPVPGL 180
Query: 178 GDMSRCPSDTLVFE-DESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
+ C D L E + E+ SNALL RAWSPGW NA+K L F++ L+EYSK+ K +
Sbjct: 181 ESVRSCSVDDLGLESSKDEESSNALLMRAWSPGWRNAEKMLEEFVSHGLLEYSKHGMKVE 240
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSR 294
ATTS LSP+LHFGEVSVRKV+ LVR++Q+ W NEG +ES++ F++SIGLREYSR
Sbjct: 241 GATTSLLSPYLHFGEVSVRKVYQLVRMQQIKWENEGTSEAEESIHFFMRSIGLREYSR 298
>gi|350562636|ref|ZP_08931469.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio thiocyanoxidans
ARh 4]
gi|349778975|gb|EGZ33324.1| Deoxyribodipyrimidine photo-lyase [Thioalkalivibrio thiocyanoxidans
ARh 4]
Length = 487
Score = 339 bits (870), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 192/488 (39%), Positives = 269/488 (55%), Gaps = 20/488 (4%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
++VW RRDLR+ D PAL A V GA V+ VF+ APEEE P+ PG S WWL HSL+ L
Sbjct: 3 ATLVWLRRDLRLADQPALLAAVERGAPVVPVFVHAPEEEAPWQPGAASNWWLHHSLARLS 62
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+L G+ L+ +R ++ +L E+V+ TGA +F+N LY+P + RD + K L G+
Sbjct: 63 EALERRGSRLILRRGP-TLETLRELVQETGADAVFWNRLYEPAVIRRDRQIKRRLRESGL 121
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V SFNA LL+EPW + G P+ F+ FW+ C D P + P
Sbjct: 122 RVESFNAALLHEPWCIRSGSGDPYRVFSPFWKSCRQAGIDGTPLPEPEALPAPPTAAARP 181
Query: 185 SDTLVFEDES--------EKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
ES E +A L R W+PG + A + L F+ Y + R
Sbjct: 182 GAAPWPGSESLDALGLLPELRWDAGLDRTWTPGEAGAHRRLHDFLENSAERYHRLRDLPG 241
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LSPHLHFGE+S R++ +R + G S FL+ IG RE++ ++
Sbjct: 242 QPGTSRLSPHLHFGEISPRQIVRALR-------DAGLDPDSGSAEPFLREIGWREFAHHL 294
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
F+ P++ E PL + F W E +AW+QGRTG P+VDA MRELW TGW+H+R R+
Sbjct: 295 LFHFPHTTEAPLNPRFEAFPWRESERDLRAWQQGRTGIPIVDASMRELWQTGWMHNRSRM 354
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+V+S K L++ W G ++FWDTL+DADL S+ LGWQ+ +G+ D + RI NP +G
Sbjct: 355 IVASLLTKNLRMHWLHGARWFWDTLVDADLASNTLGWQWTAGSGADAAPYFRIFNPVLQG 414
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
+FDP+G YVRR++PEL R+P IH P +AA L YP PIV + ++
Sbjct: 415 ERFDPDGRYVRRYVPELERVPASAIHTPRGGRG---RAADPALALGYPPPIVDLRESRQA 471
Query: 477 LDEALSEM 484
EA +
Sbjct: 472 ALEAFRRL 479
>gi|430761658|ref|YP_007217515.1| Deoxyribodipyrimidine photolyase [Thioalkalivibrio nitratireducens
DSM 14787]
gi|430011282|gb|AGA34034.1| Deoxyribodipyrimidine photolyase [Thioalkalivibrio nitratireducens
DSM 14787]
Length = 489
Score = 338 bits (868), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 191/491 (38%), Positives = 269/491 (54%), Gaps = 24/491 (4%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
++VW RRDLR+ D PAL A V GA VI VF+ APEEE P+ PG S WWL HSL+ L
Sbjct: 3 ATLVWLRRDLRLADQPALHAAVERGAPVIPVFVHAPEEETPWQPGAASNWWLHHSLARLS 62
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+L G+ L+ +R ++ +L E+V+ TGA +F+N LY+P + RD K L G+
Sbjct: 63 EALERRGSQLILRRGP-TLGTLRELVRDTGADAVFWNRLYEPALIPRDREIKHHLRESGL 121
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V SFNA LL+EPW + G P+ F+ FW+ C D D PL P+ I + S
Sbjct: 122 RVESFNAALLHEPWCIRSGSGNPYRVFSPFWKSCRQAGID-DTPLPEPQAIPAPSASTAG 180
Query: 185 SDTLVFEDESEKGSNAL-----------LARAWSPGWSNADKALTTFINGPLIEYSKNRR 233
+ + + AL LA W+PG + A L F+ Y R
Sbjct: 181 TQPRAARWPASEPLAALALLPRIRWDAGLAETWTPGEAGALVRLRDFLETSAERYHAMRD 240
Query: 234 KADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYS 293
TS +SPHLHFGE+S R++ +R + G + FL IG RE++
Sbjct: 241 LPGQPGTSRVSPHLHFGEISPRQIVRALR-------DAGFDPDSGGADQFLSEIGWREFA 293
Query: 294 RYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDR 353
++ F+ P++ PL + F W + AW+QGRTG P+VDAGMRELW TGW+H+R
Sbjct: 294 HHLLFHFPHTTGAPLNPRFEAFPWRESDRDLHAWQQGRTGIPIVDAGMRELWQTGWMHNR 353
Query: 354 IRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQ 413
R++V+S K L++ W G ++FWDTL+DADL S+ LGWQ+ +G+ D + R+ NP
Sbjct: 354 TRMIVASLLTKNLRMHWLHGARWFWDTLVDADLASNTLGWQWTAGSGADAAPYFRVFNPV 413
Query: 414 FEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAA 473
+G +FDP+G YVRR++PEL R+P IH P L A L +YP PIV + +
Sbjct: 414 LQGERFDPDGCYVRRYVPELGRVPASAIHAPRAGRGRSLDPA---LMHDYPSPIVDLRQS 470
Query: 474 KCRLDEALSEM 484
+ EA +
Sbjct: 471 REAALEAFRRL 481
>gi|407700132|ref|YP_006824919.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'Black Sea 11']
gi|407249279|gb|AFT78464.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'Black Sea 11']
Length = 474
Score = 338 bits (867), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 186/480 (38%), Positives = 269/480 (56%), Gaps = 13/480 (2%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
SI+WFR+DLRV+DNPAL A G ++ ++I+ PG S+WWL HSL+ L+
Sbjct: 5 VSIMWFRQDLRVKDNPALNAACDMGKIVPIYIYDDTTPNGREPGGASKWWLHHSLASLNK 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L G + K D + +++ + A +F+N Y+P + RD K+ L
Sbjct: 65 RLN--GHLQIFK--GDPRKLIPKLMASFDAKGIFWNRCYEPWQINRDKGIKKTLIDSDYE 120
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEK-CLSMPFDPDAPLLPPKRINSGDMSRCP 184
SFN LL+EP V G P+ F +++K CL + +P P PP RI D+S
Sbjct: 121 AHSFNGSLLWEPMKVLKKDGTPYRVFTPYYKKGCLQIE-EPRYPKAPPARITYADVSNEG 179
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
D + +A+ W+PG A L FI +Y R + TS LS
Sbjct: 180 DDLASLRLLPTIKWDETIAKTWAPGEDGAADNLADFIQNSARKYKDGRDIPSAKGTSRLS 239
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
PHLHFGEVS +V++ ++ K GN + D+S+ +L +G RE+S Y+ F+ P
Sbjct: 240 PHLHFGEVSPNQVWYAIKDKF------GN-SEDKSIETYLSELGWREFSYYLLFHFPTLP 292
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
+ F W D KAW+ GRTG P+VDAGMRELW TG++H+R+R++V SF VK
Sbjct: 293 NKNFNDKFDKFPWRTDAKALKAWQTGRTGIPIVDAGMRELWQTGYMHNRVRMIVGSFLVK 352
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L L W G ++FWDTLLDADL S++ WQ+++G+ D + RI NP +G KFD G+
Sbjct: 353 NLLLSWHEGERWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDSKGK 412
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
YVR++ PEL +L ++IH PW AP ++L+ AGIELG YP PIV + A++ R +A ++
Sbjct: 413 YVRKYCPELNKLSDKYIHKPWEAPNAILKEAGIELGKEYPKPIVDLKASRQRALDAFQQI 472
>gi|327342156|gb|AEA50865.1| cry2-2 [Populus tremula]
Length = 234
Score = 338 bits (867), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 157/232 (67%), Positives = 189/232 (81%), Gaps = 1/232 (0%)
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
+C + L EDE+EK SN+LL R WSPGWSNADKALT F LI+Y ++R K + +TS
Sbjct: 4 KCSVEELGLEDEAEKSSNSLLGRGWSPGWSNADKALTEFAEQHLIDYVESRLKVGT-STS 62
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+LHFGE+SVRKVF V++KQ+ WA E N G ESV LFL+SIGLREYSRY+ FN P
Sbjct: 63 LLSPYLHFGELSVRKVFQCVQLKQLLWAKEENLMGKESVTLFLRSIGLREYSRYLCFNFP 122
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
++HER LL +LK+F W ++ +FKAWRQGRTGYPLVDAGMRELWATGW+H++IRV+VSSF
Sbjct: 123 FTHERSLLSNLKYFPWNDNQVHFKAWRQGRTGYPLVDAGMRELWATGWIHNKIRVIVSSF 182
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQ 413
VKVL LPWRWGMKYFWDTLLDADLESD LGWQYISG++PD +R+DNP+
Sbjct: 183 AVKVLLLPWRWGMKYFWDTLLDADLESDILGWQYISGSLPDAHELERLDNPE 234
>gi|83858274|ref|ZP_00951796.1| Deoxyribodipyrimidine photolyase [Oceanicaulis sp. HTCC2633]
gi|83853097|gb|EAP90949.1| Deoxyribodipyrimidine photolyase [Oceanicaulis sp. HTCC2633]
Length = 480
Score = 337 bits (863), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 192/478 (40%), Positives = 269/478 (56%), Gaps = 11/478 (2%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
IVWFR+DLR+ DNPAL A GA VI V+I + G + PG SRWWL HSL+ L S
Sbjct: 9 IVWFRQDLRLADNPALQAAAATGAPVIPVYILDDDAPGDWRPGGASRWWLHHSLASLASD 68
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L+ LG L + ++ L +++ TGA +F+N LY+P + RD K +L +G+
Sbjct: 69 LQQLGGELALMKG-EAQEQLDALIEQTGADTVFWNRLYEPWARKRDEAIKSSLKDRGVRA 127
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
RSFN L+ EPWD+ G P+ F FW K L P P P + S
Sbjct: 128 RSFNGSLIVEPWDIATKTGNPYKVFTPFW-KSLKADHTPAEPTGRPDALQLHAHEGGLSL 186
Query: 187 TLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPH 246
+ ++ + L W+PG + A L F+ + +YS R + TS LSPH
Sbjct: 187 DDLDLLPTKPDWSGGLQENWTPGEAAAHGRLGQFLKAAVSDYSDRRDLPGQSGTSRLSPH 246
Query: 247 LHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHER 306
LHFGE+S R+V+H V+ + + A + +L I RE+S + ++ P E
Sbjct: 247 LHFGEISPRQVWHAVK--------QSDHARTGGADTYLSEIAWREFSYNLLYHFPDLPEA 298
Query: 307 PLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVL 366
F W E KAW++G+TGYP+VDAGMRELWATGW+H+R+R++V+SF +K L
Sbjct: 299 NFQSKFDAFEWDECEDKLKAWQKGQTGYPIVDAGMRELWATGWMHNRVRMIVASFLIKDL 358
Query: 367 QLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYV 426
+ WR G +FWDTL+DADL S+A WQ+ +G+ D + R+ NP + KFDP G+Y+
Sbjct: 359 FIHWRRGEDWFWDTLVDADLASNAASWQWTAGSGADAAPYFRVFNPVGQSEKFDPKGDYL 418
Query: 427 RRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
R+W+PELA LP + IH PW A +SVL AG+ LG YP PIV A+ R A ++
Sbjct: 419 RKWIPELADLPDKVIHAPWTAEKSVLSRAGVTLGETYPEPIVDHGEARKRALAAFEKI 476
>gi|407683884|ref|YP_006799058.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'English Channel 673']
gi|407245495|gb|AFT74681.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'English Channel 673']
Length = 474
Score = 337 bits (863), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 186/480 (38%), Positives = 267/480 (55%), Gaps = 13/480 (2%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
SI+WFR+DLRV+DNPAL A G ++ ++I+ PG S+WWL HSLS L+
Sbjct: 5 VSIMWFRQDLRVKDNPALNAACDMGKIVPIYIYDDTAPNGREPGGASKWWLHHSLSSLNK 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L G + K D + + +++KA A +F+N Y+P + RD K+ L
Sbjct: 65 RLN--GHLQIFK--GDPQTLVPKLMKAFNAKGIFWNRCYEPWQINRDKTIKKTLIEHDYE 120
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEK-CLSMPFDPDAPLLPPKRINSGDMSRCP 184
S N LL+EP V G P+ F +++K CL + +P P PP RI D+
Sbjct: 121 AHSCNGSLLWEPMKVLKKDGTPYRVFTPYYKKGCLQVE-EPRYPKAPPARITYADVDNDS 179
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
+ +A + + WSPG A L FI +Y R + TS LS
Sbjct: 180 DGLTSLDLLPSINWDATIEKEWSPGEDGAADNLADFIENSARKYKDGRDIPSANGTSRLS 239
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
PHLHFGEVS +V++ ++ K GN + D+S+ +L +G RE+S Y+ F+ P
Sbjct: 240 PHLHFGEVSPNQVWYAIKDKF------GN-SEDKSIETYLSELGWREFSYYLLFHFPTLP 292
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
+ F W D KAW++G TG P+VDAGMRELW TG++H+R+R++V SF VK
Sbjct: 293 NKNFNEKFDKFPWRTDAKALKAWQKGNTGIPIVDAGMRELWQTGYMHNRVRMIVGSFLVK 352
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L L W G ++FWDTLLDADL S++ WQ+++G+ D + RI NP +G KFD G
Sbjct: 353 NLLLSWHEGERWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDKKGN 412
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
YVR++ PEL +L ++IH PW AP ++L+ AGIELG YP PIV + A++ R +A +
Sbjct: 413 YVRKYCPELKKLSDKYIHKPWEAPSAILKDAGIELGKEYPKPIVDLKASRQRALDAFQTL 472
>gi|410633828|ref|ZP_11344468.1| deoxyribodipyrimidine photo-lyase [Glaciecola arctica BSs20135]
gi|410146488|dbj|GAC21335.1| deoxyribodipyrimidine photo-lyase [Glaciecola arctica BSs20135]
Length = 486
Score = 336 bits (862), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 181/482 (37%), Positives = 284/482 (58%), Gaps = 12/482 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
++VWFR+DLR+ DNPALA + +VI VFI+ PG S+WWL SL+ L+ S
Sbjct: 8 TLVWFRQDLRLRDNPALAFAAKLDSVIPVFIFDTACPEHCVPGGASKWWLHQSLNALNDS 67
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L + + D+ L+ +++ ++ +N Y+P + RD + K+ L A GI V
Sbjct: 68 LDNQLHCI----KGDASKLLIGLMQKHDIKRIAWNRAYEPWQIKRDTQLKQTLVAAGIEV 123
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEK-CLSMPFDPDAPLLPPKRINSGDMSRCPS 185
+SFN+ LL+EPW V P+ F ++ + CLS P P+ PK + S +
Sbjct: 124 QSFNSHLLWEPWQVLKKDQTPYKVFTPYYRRGCLSKS-SPRMPVAAPKDLQIEYYSEIDN 182
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
E E ++ + W+PG A + L+ F+ EY R + TS LSP
Sbjct: 183 GIDSLELMPEISWHSTIQTMWTPGEKGAAQHLSEFLPDGAKEYKNKRDFPELGATSKLSP 242
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
HLHFGE+S ++++ I ++ E D ++ +L +G RE+S Y+ F+ P+ +
Sbjct: 243 HLHFGEISPNQIWY-AGINALNGNTE-----DIGLDCYLSELGWREFSHYLLFHFPHIPQ 296
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
+ + F W DE KAW+ G+TG P+VDAGMRELW TG +H+R+R+VV+SF VK
Sbjct: 297 KNFSPKFEHFIWRNDEDSLKAWQLGQTGIPIVDAGMRELWQTGTMHNRVRMVVASFLVKN 356
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
L + WR G ++FWD LLDADL +++ WQ+++GT D + RI NP +G +FD +G+Y
Sbjct: 357 LLIDWRKGERWFWDCLLDADLAANSASWQWVAGTGADASPYFRIFNPVTQGQRFDVHGDY 416
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMW 485
V+R+ PEL+++P ++IH+PW+AP+++L AG++LG NYP P+V + A++ R +AL++
Sbjct: 417 VKRYCPELSKMPDKFIHNPWDAPQNILDYAGVKLGDNYPKPLVDLKASRLRALDALAQSK 476
Query: 486 QQ 487
QQ
Sbjct: 477 QQ 478
>gi|406596893|ref|YP_006748023.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii ATCC
27126]
gi|406374214|gb|AFS37469.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii ATCC
27126]
Length = 474
Score = 335 bits (860), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 185/480 (38%), Positives = 267/480 (55%), Gaps = 13/480 (2%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
SI+WFR+DLRV+DNPAL A G ++ ++I+ PG S+WWL HSLS L+
Sbjct: 5 VSIMWFRQDLRVKDNPALNAACDMGKIVPIYIYDDTAPNGREPGGASKWWLHHSLSSLNK 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L G + K D + + +++K+ A +F+N Y+P + RD K+ L
Sbjct: 65 RLN--GHLQIFK--GDPQTLIPKLMKSFNAKGIFWNRCYEPWQINRDKTIKKTLIEHEYE 120
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEK-CLSMPFDPDAPLLPPKRINSGDMSRCP 184
S N LL+EP V G P+ F +++K CL + +P P PP RI D+
Sbjct: 121 AHSCNGSLLWEPMKVLKKDGTPYRVFTPYYKKGCLQVE-EPRYPKAPPARITYADVDNDS 179
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
+ +A + + WSPG A L FI +Y R + TS LS
Sbjct: 180 DGLTSLDLLPSINWDATIEKEWSPGEDGAADNLADFIENSARKYKDGRDIPSANGTSRLS 239
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
PHLHFGEVS +V++ ++ K GN + D+S+ +L +G RE+S Y+ F+ P
Sbjct: 240 PHLHFGEVSPNQVWYAIKDKF------GN-SEDKSIETYLSELGWREFSYYLLFHFPTLP 292
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
+ F W D KAW++G TG P+VDAGMRELW TG++H+R+R++V SF VK
Sbjct: 293 NKNFNEKFDKFPWRTDAKALKAWQKGNTGIPIVDAGMRELWQTGYMHNRVRMIVGSFLVK 352
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L L W G ++FWDTLLDADL S++ WQ+++G+ D + RI NP +G KFD G
Sbjct: 353 NLLLSWHEGERWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDKKGN 412
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
YVR++ PEL +L ++IH PW AP ++L+ AGIELG YP PIV + A++ R +A +
Sbjct: 413 YVRKYCPELKKLSDKYIHKPWEAPSAILKDAGIELGKEYPKPIVDLKASRQRALDAFQTL 472
>gi|195995781|ref|XP_002107759.1| hypothetical protein TRIADDRAFT_18352 [Trichoplax adhaerens]
gi|190588535|gb|EDV28557.1| hypothetical protein TRIADDRAFT_18352 [Trichoplax adhaerens]
Length = 503
Score = 335 bits (859), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 176/472 (37%), Positives = 270/472 (57%), Gaps = 7/472 (1%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
C++VW R+DLR+ DNPAL + G +I V+I+ + G G+ WWL HSL L +
Sbjct: 8 CTLVWLRQDLRLIDNPALFHAAKRGQLITVYIFDEDCSGKRRTGQACLWWLYHSLKSLRN 67
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L L+ K D+ + L E++ + A +++N Y+P RD +E L + +
Sbjct: 68 QLSQWNIPLIVKSGKDAFTILKELLDSYNADAIYWNRCYEPFEYNRDCSIEEKLKMENVT 127
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRIN-SGDMSRCP 184
V ++ +L+EPW + A+G P + FW +CLS+P P P PK N +G S+C
Sbjct: 128 VETYQDRVLFEPWTIKTAKGGPVQIYVHFWNQCLSLP-QPRKPYDKPKFKNQTGCQSKC- 185
Query: 185 SDTLVFEDESEKGSNA--LLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+ V++ ++ + L W PG A L +FI L Y++ + TTS
Sbjct: 186 DEPAVWQRLAKLSQDMPMKLQDFWHPGEEQAISKLKSFIKNSLNAYAEKSQCLRLNTTSN 245
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSP+LHFGE+S V+H VR S + E ES+ +L+S+G REY+ ++ F++P
Sbjct: 246 LSPYLHFGEISPFTVWHSVR--HASSSAEPPAVKSESLKQYLRSLGWREYTCHLLFHYPD 303
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
++ + VD ++W+QG TGYP+VDAGMR+L G + +R+R++V+SF
Sbjct: 304 LPQKCFRSSFEQLKLQVDPVKLQSWQQGNTGYPVVDAGMRQLSVAGIMPNRLRMIVASFL 363
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
+K L +PW+ G ++FW L+DADL +A WQ+ +G+ P+ + R+ NP +G KFD +
Sbjct: 364 IKHLLVPWQKGEEWFWSKLIDADLAQNAFNWQWAAGSGPNACPYFRVFNPITQGEKFDAD 423
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
G YVR+W+PELA LP +IH PW AP +VL+ A I LG YP PIV+ AA+
Sbjct: 424 GYYVRKWIPELAALPNAYIHKPWEAPSTVLKKANIVLGKTYPRPIVQHKAAR 475
>gi|407687838|ref|YP_006803011.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407291218|gb|AFT95530.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 476
Score = 334 bits (857), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 189/482 (39%), Positives = 271/482 (56%), Gaps = 15/482 (3%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
SI+WFR+DLRV+DNPAL A G ++ ++I+ PG S+WWL HSLS L+
Sbjct: 5 VSIMWFRQDLRVKDNPALNAACDMGKIVPIYIYDDTAPNGREPGGASKWWLHHSLSSLNK 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L G + K D + + +++K+ A +F+N Y+P + RD K+ L
Sbjct: 65 RLN--GHLQIFK--GDPQTLIPKLMKSFNAKGIFWNRCYEPWQINRDKTIKKTLIEHDYE 120
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEK-CLSMPFDPDAPLLPPKRINSGDMSR-C 183
S N LL+EP V G P+ F +++K CL + +P P PP RI D+
Sbjct: 121 AHSCNGSLLWEPMKVLKKDGTPYRVFTPYYKKGCLQVE-EPRYPKAPPARITYADVDNDS 179
Query: 184 PSDTLVFEDESEKGS-NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
SD L D + +A + + WSPG A L FI +Y R + TS
Sbjct: 180 DSDGLTSLDLLPTINWDATIEKEWSPGEDGAADNLADFIENSARKYKDGRDIPSANGTSR 239
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHLHFGEVS +V++ ++ K GN + D+S+ +L +G RE+S Y+ F+ P
Sbjct: 240 LSPHLHFGEVSPNQVWYAIKDKF------GN-SEDKSIETYLSELGWREFSYYLLFHFPT 292
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ F W D KAW++G TG P+VDAGMRELW TG++H+R+R++V SF
Sbjct: 293 LPNKNFNEKFDKFPWRTDAKALKAWQKGNTGIPIVDAGMRELWQTGYMHNRVRMIVGSFL 352
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L L W G ++FWDTLLDADL S++ WQ+++G+ D + RI NP +G KFD
Sbjct: 353 VKNLLLSWHEGERWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDKK 412
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
G YVR++ PEL +L ++IH PW AP ++L+ AGIELG YP PIV + A++ R +A
Sbjct: 413 GNYVRKYCPELNKLSDKYIHKPWEAPSAILKDAGIELGKEYPKPIVDLKASRQRALDAFQ 472
Query: 483 EM 484
+
Sbjct: 473 TL 474
>gi|77964002|gb|ABB13342.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare]
Length = 304
Score = 333 bits (854), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 188/312 (60%), Positives = 224/312 (71%), Gaps = 19/312 (6%)
Query: 379 DTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPT 438
DTLLDADLESDALGWQYISG++PDGR DRIDNPQFEGYKFDP GEYVRRWLPELARLPT
Sbjct: 1 DTLLDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPT 60
Query: 439 EWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENG 498
EWIHHPW+APESVLQAAGIELGSNYP PIV +D AK RL +ALSEMW+ EAASRA IENG
Sbjct: 61 EWIHHPWDAPESVLQAAGIELGSNYPLPIVELDEAKSRLQDALSEMWELEAASRAEIENG 120
Query: 499 TEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTT---ARRYEDQMVPSMTTSLVRVEE 555
EEGLGDSSD PIAFP ++Q E+ + A ++ P T ARR DQMVPS+T+SLVR E
Sbjct: 121 MEEGLGDSSDEPPIAFPQELQHMEV-DRATSHTPATAGPARRRADQMVPSITSSLVRA-E 178
Query: 556 EESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNNAFQQFNAAIVLANAE 615
E+ L +E SR EVP + +PR ++ Q V ++ ++N L +
Sbjct: 179 TETELSAVFESEVSRPEVPSQVHFQAQPRMESREQ-----VASDGTAARYNQQYTLHRVQ 233
Query: 616 D-----STAESSSTSRRERDGGVVPVWS-PATSSYSEQLVGDENGIGTSSSYLQRHPQSH 669
ST+E+SS S R+GGVVPVWS PA S +S+ DE I +S SYL R+PQSH
Sbjct: 234 GGGIAPSTSEASS-SWTGREGGVVPVWSPPAASGHSDPYAADETDI-SSRSYLDRNPQSH 291
Query: 670 -QIMNCRRLSQT 680
++MN +LSQ+
Sbjct: 292 NRLMNWNQLSQS 303
>gi|410615205|ref|ZP_11326231.1| deoxyribodipyrimidine photo-lyase [Glaciecola psychrophila 170]
gi|410165289|dbj|GAC40120.1| deoxyribodipyrimidine photo-lyase [Glaciecola psychrophila 170]
Length = 484
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 186/493 (37%), Positives = 280/493 (56%), Gaps = 34/493 (6%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
++VWFR+DLR+ DNPAL G VI ++I + + PG S+WWL SLS L+ S
Sbjct: 8 TLVWFRQDLRLRDNPALTYASERGLVIPLYISDTDCPEHFVPGSASKWWLHQSLSSLNDS 67
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L L D+ L+E ++ + +N Y+P + RD + K AL GI V
Sbjct: 68 LNGQLHCL----KGDASKLLIEFIQLHDIKSVVWNRSYEPWQIKRDTQLKHALIEAGINV 123
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEK-CLSMPFDPDAPLLPPKRINSGDMSRCPS 185
+SFN+ LL+EPW V P+ F ++ + CLS P P+ PK +
Sbjct: 124 QSFNSHLLWEPWQVLKKDETPYKVFTPYYRRGCLSKA-SPRMPVEVPKNLQ--------- 173
Query: 186 DTLVFEDESEKGSNAL-----------LARAWSPGWSNADKALTTFINGPLIEYSKNRRK 234
+ + ES+KG ++L + + W+PG A L+ F+ EY R
Sbjct: 174 --IEYFPESDKGLDSLELMPDINWHGTIEKMWTPGEQGAANHLSDFLPDGAKEYKNKRDF 231
Query: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSR 294
D TS LS HLHFGE+S +V++ I ++ E D ++ +L +G RE+S
Sbjct: 232 PDLGATSKLSAHLHFGEISPNQVWY-AAIDSLNGNTE-----DVGLDCYLSELGWREFSH 285
Query: 295 YMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
+ F+ P+ ++ + F W D+ KAW+ G+TG P+VDAGMRELW TG +H+R+
Sbjct: 286 SLLFHFPHIPQKNFSPKFEHFPWRTDDNSLKAWQLGQTGIPIVDAGMRELWQTGTMHNRL 345
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R+VV SF VK L + WR G ++FWD LLDADL +++ WQ+I+GT D + RI NP
Sbjct: 346 RMVVGSFLVKNLLIDWRKGERWFWDCLLDADLAANSASWQWIAGTGADAAPYFRIFNPVT 405
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
+G +FDP G+YV+R+ PEL++LP ++IH+PW+AP+++L AGI+LG NYP P+V + ++
Sbjct: 406 QGQRFDPKGDYVKRYCPELSKLPDKFIHNPWDAPQNILNYAGIKLGDNYPRPLVDLKISR 465
Query: 475 CRLDEALSEMWQQ 487
R +AL++ QQ
Sbjct: 466 LRALDALAQSKQQ 478
>gi|83594235|ref|YP_427987.1| deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
ATCC 11170]
gi|386350987|ref|YP_006049235.1| deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
F11]
gi|83577149|gb|ABC23700.1| Deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
ATCC 11170]
gi|346719423|gb|AEO49438.1| deoxyribodipyrimidine photo-lyase type I [Rhodospirillum rubrum
F11]
Length = 478
Score = 332 bits (851), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 192/483 (39%), Positives = 264/483 (54%), Gaps = 22/483 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYP-GRVSRWWLKHSLSHLDS 65
+VWFR DLR+ DNPAL A + +GA VI ++ + P G +RWWL SL+ L
Sbjct: 6 LVWFRDDLRLADNPALCAALDSGAPVIPFYLLDDSTSDGHRPLGGATRWWLGRSLTSLAE 65
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
S+ G LV +R +++S++ E+ T A LF N LY + +RD L G+
Sbjct: 66 SIAQRGGRLVLRRG-EALSAVPELAAETDAAALFANRLYG-MDSLRDDDLFMVLRVAGLT 123
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
VR F++ LL+ P V G+PF F FW K LS DP PL P D S
Sbjct: 124 VRLFDSGLLHRPEAVTTKTGRPFRVFTPFW-KTLSATLDPGLPLAAPDSFPPVDDPPPAS 182
Query: 186 DTLV---FEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
D+L E + + L W PG + A L F NGP+ +Y+ R + D TS
Sbjct: 183 DSLADWSLEPTTPDWAGGL-RDTWQPGEAGAQARLEAFFNGPVADYASGRDRPDKPLTSK 241
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHL FGE+S R+V W + ++ FL+ +G RE+ ++ F P
Sbjct: 242 LSPHLRFGEISPRQV----------WTAARHHPPGGGMDAFLRELGWREFCHHLLFQAPT 291
Query: 303 SHERPLLGHLKFFSWVVDEGY---FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
E PL F W + AW+ G TGYP+VDAGMRELW TGW+H+R+R++ +
Sbjct: 292 MAEEPLKAEFLAFPWTEAKEIGPALAAWQSGETGYPIVDAGMRELWHTGWMHNRVRMIAA 351
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF +K L +PW+ G ++FWDTL+DA ++A GWQ+++G D F RI NP +G +F
Sbjct: 352 SFLIKDLLIPWQHGERWFWDTLVDACPANNAAGWQWVAGCGADAAPFFRIFNPVTQGERF 411
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP G YVRRWLPELA LP+ IH PW AP +L+ AG+ LG YP P++ A+ R E
Sbjct: 412 DPEGAYVRRWLPELADLPSSLIHRPWEAPPLILRQAGVTLGKTYPPPLIDHAHARVRALE 471
Query: 480 ALS 482
AL+
Sbjct: 472 ALA 474
>gi|414173991|ref|ZP_11428618.1| hypothetical protein HMPREF9695_02264 [Afipia broomeae ATCC 49717]
gi|410890625|gb|EKS38424.1| hypothetical protein HMPREF9695_02264 [Afipia broomeae ATCC 49717]
Length = 484
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 193/476 (40%), Positives = 271/476 (56%), Gaps = 18/476 (3%)
Query: 1 MSGRGCS--IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGR----VSRW 54
M+G S IVWFR DLR+ D+PAL ++GA + V ++ +EEG GR SRW
Sbjct: 1 MTGSSASPLIVWFRDDLRLSDHPALHDAAQSGAPL-VCLYVLDEEGSPQHGRPIGSASRW 59
Query: 55 WLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHR 114
WL SL L SL + G SL +R + + ++ + A+ + +N P +
Sbjct: 60 WLAQSLRSLQGSLTARGQSLTLRRGRPA-RVIADLAQEIRASAVHWNESDIPGEAATERE 118
Query: 115 AKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKR 174
AL G+A RSF +DLL P + + +G+ F FW++ LS+ DP PL PK
Sbjct: 119 VTTALDRIGVASRSFPSDLLVRPEKLRNKEGRGLRVFTPFWKRVLSL-GDPPQPLPAPKA 177
Query: 175 INSGDMSRCPSDTLVF--EDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNR 232
+ +G + +D L + + + L W+PG + A K L F++ + Y+ R
Sbjct: 178 LTAG--PKIATDDLASWNLEPTRPDWASGLRETWTPGEAAAQKRLKDFLDNDIASYASLR 235
Query: 233 RKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREY 292
+ D TS LSPHL FGE+S R+V+H S+A G A SV FL +G RE+
Sbjct: 236 DRPDRDATSRLSPHLRFGEISPRQVWH-----SASFAAAGKPAISSSVAKFLSELGWREF 290
Query: 293 SRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHD 352
SR++ F+HP ER L F W D +AW++G+TGYP+VDAGMRELW TG +H+
Sbjct: 291 SRHLLFDHPQLAERNLQSSFDAFPWHSDPKALRAWQRGQTGYPIVDAGMRELWHTGIMHN 350
Query: 353 RIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNP 412
R+R+VV+SF VK L + WR G K+FWDTL+DAD S+ WQ+++G+ D + R+ NP
Sbjct: 351 RVRMVVASFLVKHLLIDWRDGEKWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNP 410
Query: 413 QFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
+G KFDP+G YV +W+PELARLP + IH PW A L AAG+ LG YP PIV
Sbjct: 411 ILQGEKFDPDGAYVSKWVPELARLPAKLIHQPWEATPMELAAAGVTLGKTYPEPIV 466
>gi|410861788|ref|YP_006977022.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii AltDE1]
gi|410819050|gb|AFV85667.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii AltDE1]
Length = 474
Score = 327 bits (839), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 178/480 (37%), Positives = 264/480 (55%), Gaps = 13/480 (2%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
SI+WFR+DLRV+DNPAL A G ++ ++I+ PG S+WWL HSL L+
Sbjct: 5 VSIMWFRQDLRVKDNPALNAACDMGKIVPIYIFDESAPDGRMPGGASKWWLHHSLKSLNK 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L G + K D + + +++++ A+ +F+N Y+P + RD K++L
Sbjct: 65 RLN--GHLQIFK--GDPQTLIPKLMESFNASSIFWNRCYEPWQINRDKAIKKSLLDSDYE 120
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEK-CLSMPFDPDAPLLPPKRINSGDMSRCP 184
SFN LL+EP V G P+ F +++ CL + +P P PP RI D+
Sbjct: 121 AHSFNGSLLWEPMKVLKKDGTPYRVFTPYYKNGCLQIE-EPRYPKAPPARITYADVDDNS 179
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
+ +A+ W+PG A L+ FI Y R + TS LS
Sbjct: 180 DGLAALALLPTIKWDDTIAKEWTPGEDGAADNLSDFIENSARRYKDGRDIPSAKGTSRLS 239
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
PHLHFGEVS +V++ ++ + + D+S+ +L +G RE+S Y+ F+ P
Sbjct: 240 PHLHFGEVSPNQVWYAIK-------DRFGTSEDKSIETYLSELGWREFSYYLLFHFPTLP 292
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
+ F W D KAW+ G TG P+VDAGMRELW TG++H+R+R++V SF VK
Sbjct: 293 NKNFNDKFDKFPWRTDAKALKAWQTGNTGIPIVDAGMRELWQTGYMHNRVRMIVGSFLVK 352
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L L W G ++FWDTLLDADL S++ WQ+++G+ D + RI NP +G KFD G
Sbjct: 353 NLLLSWHEGERWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDKKGG 412
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
YVR++ PEL L ++IH PW AP ++L+ AG+ELG +YP PIV + A++ R +A +
Sbjct: 413 YVRQYCPELNGLSDKYIHKPWEAPSAILKEAGVELGKDYPKPIVDLKASRQRALDAFQTL 472
>gi|389695632|ref|ZP_10183274.1| deoxyribodipyrimidine photolyase [Microvirga sp. WSM3557]
gi|388584438|gb|EIM24733.1| deoxyribodipyrimidine photolyase [Microvirga sp. WSM3557]
Length = 492
Score = 327 bits (839), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 196/475 (41%), Positives = 264/475 (55%), Gaps = 15/475 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
+VWFR D R+ DNPALAA G+ + F + G +RWWL SL L SL
Sbjct: 10 LVWFRDDHRLADNPALAAAAATGSQVLCFAVIGGSDDLRPLGGAARWWLHGSLRALGESL 69
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
G SL + S + V + TGA+ +F+N Y + D K+ LT GI
Sbjct: 70 EQAGASLALFEGP-APSVVERVARETGASAIFWNRRYGAAEIALDTAVKKRLTDSGIKAH 128
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGD------MS 181
SFN LL+EPWD+ + G+PF F + ++ A L PPKRI G S
Sbjct: 129 SFNGRLLHEPWDIVNQAGRPFQVFTPYLRTVMTRGLK--AALAPPKRIPGGIWPSSLLAS 186
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
P + L E S + L AW PG A K+ F++ L Y++NR + TS
Sbjct: 187 TIPLEELGLEPSSPDWAGGLRT-AWRPGEEAARKSFRHFLSKGLRGYAENRDRPSLIGTS 245
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSPHL FGE+S R+++H V QV A + A D +L I R++S + HP
Sbjct: 246 RLSPHLRFGEISPRQIWHAV-TAQV--AEHPSLARD--AEKYLSEIVWRDFSHQLLHFHP 300
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ R F W+ D KAWR+GRTGYP+VDAGMR+LW TGW+H+R+R++ +SF
Sbjct: 301 HLPVRSHSSRFDAFPWIDDPKTLKAWRRGRTGYPIVDAGMRQLWQTGWMHNRVRMITASF 360
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L WR G +FWDTL+DAD ++A WQ+++G+ PD F RI NP +G KFDP
Sbjct: 361 LVKHLLTDWRKGEAWFWDTLVDADPANNAFSWQWVAGSGPDSAPFHRIFNPVTQGEKFDP 420
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
+G+YVR ++PELA LP+ ++HHPW+AP +VLQ AGI LG YP PIV A+ R
Sbjct: 421 DGDYVRTFVPELAGLPSTFLHHPWDAPPAVLQEAGISLGETYPEPIVVHGLARER 475
>gi|388250769|gb|AFK23500.1| cryptochrome 2 apoprotein-like protein, partial [Sorghum bicolor]
Length = 184
Score = 327 bits (838), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 160/183 (87%), Positives = 170/183 (92%)
Query: 293 SRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHD 352
SRY+SFNHP SHERPLL HL+FF WVV+E YFK WRQGRTGYPLVDAGMRELWATGWLHD
Sbjct: 2 SRYLSFNHPSSHERPLLAHLRFFPWVVNESYFKIWRQGRTGYPLVDAGMRELWATGWLHD 61
Query: 353 RIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNP 412
RIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYI+G++PD R DRIDNP
Sbjct: 62 RIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGSLPDSRELDRIDNP 121
Query: 413 QFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDA 472
QFEGYKFDP+GEYVRRW+PEL RLPTEWIHHPW+AP SVLQAAGIELGSNYP PIV +DA
Sbjct: 122 QFEGYKFDPHGEYVRRWIPELVRLPTEWIHHPWDAPVSVLQAAGIELGSNYPLPIVELDA 181
Query: 473 AKC 475
AK
Sbjct: 182 AKA 184
>gi|77964000|gb|ABB13341.1| cryptochrome 1a [Hordeum vulgare subsp. vulgare]
Length = 301
Score = 327 bits (838), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 185/309 (59%), Positives = 221/309 (71%), Gaps = 19/309 (6%)
Query: 382 LDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWI 441
LDADLESDALGWQYISG++PDGR DRIDNPQFEGYKFDP GEYVRRWLPELARLPTEWI
Sbjct: 1 LDADLESDALGWQYISGSLPDGRELDRIDNPQFEGYKFDPYGEYVRRWLPELARLPTEWI 60
Query: 442 HHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEE 501
HHPW+APESVLQAAGIELGSNYP PIV +D AK RL +ALSEMW+ EAASRA IENG EE
Sbjct: 61 HHPWDAPESVLQAAGIELGSNYPLPIVELDEAKSRLQDALSEMWELEAASRAEIENGMEE 120
Query: 502 GLGDSSDSAPIAFPPDIQMEEIPEPARNNLPTT---ARRYEDQMVPSMTTSLVRVEEEES 558
GLGDSSD PIAFP ++Q E+ + A ++ P T ARR DQMVPS+T+SLVR E E+
Sbjct: 121 GLGDSSDEPPIAFPQELQHMEV-DRATSHTPATAGPARRRADQMVPSITSSLVRA-ETET 178
Query: 559 SLELRNSAEESRAEVPRNANVNQEPRRDTLNQGVLQTVHNNNAFQQFNAAIVLANAED-- 616
L +E SR EVP + +PR ++ Q V ++ ++N L +
Sbjct: 179 ELSAVFESEVSRPEVPSQVHFQAQPRMESREQ-----VASDGTAARYNQQYTLHRVQGGG 233
Query: 617 ---STAESSSTSRRERDGGVVPVWS-PATSSYSEQLVGDENGIGTSSSYLQRHPQSH-QI 671
ST+E+SS S R+GGVVPVWS PA S +S+ DE I +S SYL R+PQSH ++
Sbjct: 234 IAPSTSEASS-SWTGREGGVVPVWSPPAASGHSDPYAADETDI-SSRSYLDRNPQSHNRL 291
Query: 672 MNCRRLSQT 680
MN +LSQ+
Sbjct: 292 MNWNQLSQS 300
>gi|392953097|ref|ZP_10318651.1| Deoxyribodipyrimidine photo-lyase [Hydrocarboniphaga effusa AP103]
gi|391858612|gb|EIT69141.1| Deoxyribodipyrimidine photo-lyase [Hydrocarboniphaga effusa AP103]
Length = 478
Score = 327 bits (838), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 184/487 (37%), Positives = 272/487 (55%), Gaps = 22/487 (4%)
Query: 9 VWFRRDLRVEDNPALAAGV-RAGAVIAVFIWAPEE-EGPYYPGRVSRWWLKHSLSHLDSS 66
+WFRRDLR+ DNPALA + A V+ V+I PE EG + PG SRWWL HSL+ LD+
Sbjct: 1 MWFRRDLRLADNPALAHALGHAERVVPVYILPPEALEGAWTPGAASRWWLHHSLAALDAQ 60
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
LR G LV R D ++ L +V TGA +F+N Y+P + D R EAL G+
Sbjct: 61 LRESGAQLVI-RQGDPLAQLRRLVGETGAEGVFWNRRYEPAWVKSDRRVGEALIEDGVEA 119
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWE--KCLSMPFDP-DAPL---LPPKRINSGDM 180
++F A+LL EPW + G P+ + F + L +P P AP +P K+I S D+
Sbjct: 120 QAFAANLLVEPWALKTGSGGPYRVYTPFSRSARALGLPRQPIPAPRRIPMPAKKIASDDL 179
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
+ + D L AW+PG A L F L Y+ R + D T
Sbjct: 180 ASLKLLPTIVWDGG-------LVEAWTPGEDGAHARLDRFCRKALDGYAAGRDRPDQVLT 232
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSPHLHFGE++ + V+ + S + G G E ++ + + RE++ ++ +
Sbjct: 233 SLLSPHLHFGEITPVQALARVQRELASESRAGLHGGAE---VYERELYWREFAHHVLHHF 289
Query: 301 PYSHERPLLGHLKFFSWVVDEGY---FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
P + E P+ F W Y + W++G+TG P+VDAGMR+LW TGW+H+R+R++
Sbjct: 290 PKTPEAPMNERFAGFVWRKPREYADDLRRWQRGQTGVPIVDAGMRQLWTTGWMHNRVRMI 349
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V+S+ VK L +PW+ G ++FW TL+DADL ++ LGWQ+++G D + RI NP +
Sbjct: 350 VASYLVKNLLIPWQEGERWFWGTLVDADLANNTLGWQWVAGCGADAAPYFRIFNPVTQSQ 409
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
KFDP G Y+R W+PE+ +LP + +H PW A +L+ G LG +YP P V + ++ R
Sbjct: 410 KFDPEGRYLRHWVPEIGKLPDKALHAPWLADAGLLRQHGFTLGQHYPRPAVDLGESRARA 469
Query: 478 DEALSEM 484
EA + +
Sbjct: 470 LEAFARI 476
>gi|328544427|ref|YP_004304536.1| deoxyribodipyrimidine photolyase family protein [Polymorphum gilvum
SL003B-26A1]
gi|326414169|gb|ADZ71232.1| Deoxyribodipyrimidine photolyase family [Polymorphum gilvum
SL003B-26A1]
Length = 480
Score = 327 bits (838), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 188/467 (40%), Positives = 265/467 (56%), Gaps = 19/467 (4%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGP---YYP-GRVSRWWLKHSLS 61
++VWFR+DLR+ DNPAL G+V+ VF+ +EGP +P G SRWWL HSL
Sbjct: 2 TTLVWFRQDLRIADNPALFEAAARGSVLPVFV---LDEGPGDNTHPLGAASRWWLHHSLE 58
Query: 62 HLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTA 121
L R LG ++ D + E+ +A G + +N Y+P ++ RD K AL A
Sbjct: 59 AL---ARDLGRLVLLH--GDPQRLIPELARAAGVGAVHWNRCYEPHAVRRDTALKAALIA 113
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMS 181
G+ VRSFNA LL EPW++ G PF F+ +W L+ P P P I +G
Sbjct: 114 AGVEVRSFNAALLNEPWELETKTGGPFKVFSPYWRAALARPVATPLPRPPRLEIAAGQAG 173
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
D + + + W PG + A + L F+ L Y+ R + D + S
Sbjct: 174 DRLDDWRLRPTAPDWAAG--WRDLWHPGEAGAAERLEHFLEAGLDGYATLRDRPDLSHVS 231
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSPHLHFGEVS R+V + + +A + + FL IG RE+S ++ ++ P
Sbjct: 232 RLSPHLHFGEVSPRQV-----VARTRFAAGRTPGLERDADKFLAEIGWREFSHHLLYHFP 286
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
ER + W G W++G+TGYP+VDAGMRELWATG++H+R+R++ +SF
Sbjct: 287 RLPERNWKSTFDAYPWRDSSGDLAVWQRGQTGYPMVDAGMRELWATGYMHNRVRMLAASF 346
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L+L WR G +F DTL+DADL ++A GWQ+++G+ D + RI +P +G +FDP
Sbjct: 347 LVKHLRLDWRLGEAWFRDTLVDADLANNAAGWQWVAGSGADAAPYFRIFSPVGQGRRFDP 406
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
G YVRRW PELARLP + +H P++AP VL+AAG+ELG YP PIV
Sbjct: 407 GGAYVRRWCPELARLPDDHVHAPFDAPAVVLKAAGVELGRTYPHPIV 453
>gi|229070649|ref|ZP_04203886.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F65185]
gi|229080332|ref|ZP_04212857.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-2]
gi|228703001|gb|EEL55462.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-2]
gi|228712471|gb|EEL64409.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F65185]
Length = 476
Score = 327 bits (837), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 167/480 (34%), Positives = 269/480 (56%), Gaps = 16/480 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ V++ ++ + G ++WWL+H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDETFSIGSAAKWWLRHAIMDVQKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
++LG++L+ R ++ +L ++K T +++N YDP L + + K L +GI +
Sbjct: 62 KALGSTLII-RKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDKGIICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
FN+ LL EPW + + F F+ F P R+ S +
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYN-----AFQKQVIPKPISRVQSIKWGNSLPAS 175
Query: 188 LVFEDESEKGS---NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
L + + + + W P A K F + L+ YS+ R D S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQNVHSMLA 235
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
P+L FG++SV+ +FH + K ++ VN F++ + RE+S Y+ +++P++
Sbjct: 236 PYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTV 292
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
+PL + F W +E + W++G TGYP +DAGMRELW TG++H+R R+ V+SF VK
Sbjct: 293 YKPLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD NGE
Sbjct: 353 HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGE 412
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
Y+RRW+PEL +P ++IH PW APE +LQ + I+LG+ YP+PIV AA+ R A M
Sbjct: 413 YIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKNM 472
>gi|374619940|ref|ZP_09692474.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HIMB55]
gi|374303167|gb|EHQ57351.1| deoxyribodipyrimidine photolyase [gamma proteobacterium HIMB55]
Length = 481
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 184/473 (38%), Positives = 264/473 (55%), Gaps = 14/473 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IV FR+DLR+ D+PAL A + GAVI VF+ E G + G SRWWLK SL +L S+
Sbjct: 4 TIVLFRQDLRLHDHPALTAAAQRGAVIPVFVLDDEACGDWVMGGASRWWLKQSLLNLGST 63
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
+ G L+ +R D++++L+++ +GA ++F+ Y P S + +A + V
Sbjct: 64 IAQSGGELILRRG-DTLTALIDIQSQSGADAIYFSRQYQPWSAAMEKAINDAFNEDDVEV 122
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
+ + LL+EP V G F F FW L +P A LP +N + D
Sbjct: 123 KRYPGTLLHEPGSVLTGSGTGFKVFTPFWRAALKLPV---ATPLPSPAVNWSNAVPAAED 179
Query: 187 --TLVFEDESEKGSNALLA---RAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
+ V + + G A W PG A AL F++ P+ YS+ R TS
Sbjct: 180 LNSWVLDPAEDAGVPDWAAGWEDIWEPGEDGAHNALEAFLDAPVAHYSEGRDLPARRYTS 239
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSPHL FGE+S R+V+ + +++S A E A D+ FL IG RE+ +
Sbjct: 240 RLSPHLKFGEISPRQVWASAQQRKLS-APEWTSAIDK----FLAEIGWREFCYQLIDLFD 294
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+RP F W E + KAW++G TGYP+VDAGMRELW TG++H+R+R++V+SF
Sbjct: 295 AMPDRPFKDQFAGFPWDNSEEHLKAWQRGMTGYPIVDAGMRELWQTGFMHNRVRMIVASF 354
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L + W G ++FWD LLDAD+ S+A WQ+++G+ D + RI NP +G KFDP
Sbjct: 355 LTKHLLVHWLEGERWFWDCLLDADIASNACSWQWVAGSGADAAPYFRIFNPIAQGQKFDP 414
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
GEYV+RW PELA +P +++H PW AP L +AG+ELG YP PIV A+
Sbjct: 415 EGEYVKRWCPELADMPKKFVHAPWEAPAMTLASAGVELGKTYPEPIVDHKTAR 467
>gi|389878514|ref|YP_006372079.1| Deoxyribodipyrimidine photolyase [Tistrella mobilis KA081020-065]
gi|388529298|gb|AFK54495.1| Deoxyribodipyrimidine photolyase [Tistrella mobilis KA081020-065]
Length = 489
Score = 326 bits (835), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 186/477 (38%), Positives = 258/477 (54%), Gaps = 13/477 (2%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYP--------GRVSRWWLKHS 59
IVWFR+DLR+ DNPAL R+G+ + V ++ E++ P + G +RWWL S
Sbjct: 7 IVWFRQDLRIADNPALHRASRSGSRL-VCVYVHEDDDPAHDDVPAPRPLGGAARWWLHRS 65
Query: 60 LSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
L LD+ LR++G L+ + + + + + GA + N +YDP RD E L
Sbjct: 66 LLALDADLRAIGGRLLLLKGP-AAREIPALARRIGAGAVLINRVYDPEGAARDRAIGERL 124
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGD 179
A GI + NA LL+EPW + G P+ F FW P PL P R++ +
Sbjct: 125 KADGIHMAGHNALLLHEPWTIETKTGGPYQVFTPFWRAARDKGEIP-PPLAAPDRLDLVE 183
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+ + +A +W+PG + A L F+N L Y +R + T
Sbjct: 184 DAPEGVPLAALDLLPRIDWAGGIAASWTPGSAGARDRLAGFLNRALTGYKPDRDRPAGET 243
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSPHL FGE+ R V+H V A S + FL +G RE+S ++ +
Sbjct: 244 TSRLSPHLRFGEIGPRTVWHAV--HHAIEAQGLTGPARASADTFLTELGWREFSYHLLHH 301
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P+ R L L F W D AW++GRTGYP+VDAGMR+LW TGW+H+R+R+VV+
Sbjct: 302 FPHLPARDLKETLTGFPWREDAAALDAWQRGRTGYPIVDAGMRQLWHTGWMHNRVRMVVA 361
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L + W+ G +FWDTL+DAD S+ WQ+ +GT D + RI NP +G +F
Sbjct: 362 SFLVKHLMIWWKPGEAWFWDTLVDADPASNTASWQWSAGTGADAAPYFRIFNPVLQGERF 421
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
D +G YVRRW+PELA+LP ++H PW AP SVL AGI G YP PIV D A+ R
Sbjct: 422 DGDGAYVRRWVPELAKLPDRYLHKPWTAPASVLATAGIRPGQTYPAPIVDHDQARER 478
>gi|332141440|ref|YP_004427178.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep
ecotype']
gi|327551462|gb|AEA98180.1| deoxyribodipyrimidine photo-lyase [Alteromonas macleodii str. 'Deep
ecotype']
Length = 474
Score = 325 bits (834), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 177/480 (36%), Positives = 263/480 (54%), Gaps = 13/480 (2%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
SI+WFR+DLRV+DNPAL A G ++ ++I+ PG S+WWL HSL L+
Sbjct: 5 VSIMWFRQDLRVKDNPALNAACDMGKIVPIYIFDESAPDGRMPGGASKWWLHHSLKSLNK 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L G + K D + + +++++ A+ +F+N Y+P + RD K++L
Sbjct: 65 RLN--GHLQIFK--GDPQTLIPKLMESFNASSIFWNRCYEPWQINRDKAIKKSLLGSDYE 120
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEK-CLSMPFDPDAPLLPPKRINSGDMSRCP 184
SFN L+EP V G P+ F +++ CL + +P P PP RI D+
Sbjct: 121 AHSFNGSSLWEPMKVLKKDGTPYRVFTPYYKNGCLQIE-EPRYPKAPPARITYADVDDNS 179
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
+ +A+ W+PG A L+ FI Y R + TS LS
Sbjct: 180 DGLAALALLPTIKWDDTIAKEWTPGEDGAADNLSDFIENSARRYKDGRDIPSAKGTSRLS 239
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
PHLHFGEVS +V++ ++ + + D+S+ +L +G RE+S Y+ F+ P
Sbjct: 240 PHLHFGEVSPNQVWYAIK-------DRFGTSEDKSIETYLSELGWREFSYYLLFHFPTLP 292
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
+ F W D KAW+ G TG P+VDAGMRELW TG++H+R+R++V SF VK
Sbjct: 293 NKNFNDKFDKFPWRTDAKALKAWQTGNTGIPIVDAGMRELWQTGYMHNRVRMIVGSFLVK 352
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L L W G ++FWDTLLDADL S++ WQ+++G+ D + RI NP +G KFD G
Sbjct: 353 NLLLSWHEGERWFWDTLLDADLASNSASWQWVAGSGADAAPYFRIFNPILQGEKFDKKGG 412
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
YVR++ PEL L ++IH PW AP ++L+ AG+ELG +YP PIV + A++ R +A +
Sbjct: 413 YVRQYCPELNGLSDKYIHKPWEAPSAILKEAGVELGKDYPKPIVDLKASRQRALDAFQTL 472
>gi|228940236|ref|ZP_04102807.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228973152|ref|ZP_04133742.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228979734|ref|ZP_04140058.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis Bt407]
gi|384187171|ref|YP_005573067.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410675484|ref|YP_006927855.1| deoxyribodipyrimidine photo-lyase Phr [Bacillus thuringiensis
Bt407]
gi|452199537|ref|YP_007479618.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228780047|gb|EEM28290.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis Bt407]
gi|228786555|gb|EEM34544.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228819362|gb|EEM65416.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326940880|gb|AEA16776.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|409174613|gb|AFV18918.1| deoxyribodipyrimidine photo-lyase Phr [Bacillus thuringiensis
Bt407]
gi|452104930|gb|AGG01870.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 476
Score = 324 bits (831), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 172/482 (35%), Positives = 269/482 (55%), Gaps = 20/482 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ V+I +E + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYI----QEETFSIGSASKWWLHHAVIDVKKQL 61
Query: 68 RSLGTSLVTK--RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LG++L+ + R+ + + SL+E + T +++N YDP L + + K L +GI
Sbjct: 62 EALGSTLIIRKGRTEEEILSLIEQLDITA---VYWNICYDPDRLQSNQKMKMMLEDKGII 118
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
+ FN+ LL EPW + + F F+ F P R+ S
Sbjct: 119 CKEFNSHLLLEPWVIKKKDNTEYKVFTPFYN-----AFQKQVIPKPISRVQSIKWGNSLP 173
Query: 186 DTLVFEDESEKGS---NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+L + + + + W P A K F + L+ YS+ R D S
Sbjct: 174 ASLSVSELHLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQNVHSM 233
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
L+P+L FG++SV+ +FH + K ++ VN F++ + RE+S Y+ +++P+
Sbjct: 234 LAPYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPF 290
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ RPL + F W +E + W++G+TGYP +DAGMRELW TG++H+R R+ V+SF
Sbjct: 291 TVYRPLNKSFENFPWNKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFL 350
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD N
Sbjct: 351 VKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKN 410
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
GEY+RRW+PEL +P ++IH PW APE +LQ + I+LG YP+PIV AA+ R A
Sbjct: 411 GEYIRRWVPELRYIPNKYIHKPWEAPEHILQKSNIKLGDTYPYPIVDHKAARERALCAYK 470
Query: 483 EM 484
M
Sbjct: 471 SM 472
>gi|154250969|ref|YP_001411793.1| deoxyribodipyrimidine photo-lyase [Parvibaculum lavamentivorans
DS-1]
gi|154154919|gb|ABS62136.1| Deoxyribodipyrimidine photo-lyase [Parvibaculum lavamentivorans
DS-1]
Length = 475
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 196/481 (40%), Positives = 267/481 (55%), Gaps = 18/481 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+I+WFRRDLR++ NPALAA + G VI +FI P + PG SRWWL SL L S
Sbjct: 6 AILWFRRDLRLDANPALAAAMARGPVIPLFILDPADR----PGAASRWWLHGSLEALGES 61
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKA-TGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L LG L+ +R S S +L + A T A +F+N LY+P + RD K ALTAQGI
Sbjct: 62 LARLGAPLILRRG--SPSEILPALTAETDARAIFWNRLYEPHLIGRDKALKSALTAQGIE 119
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
V SFN LL EPW V G P+ F FW MPF AP PK+ +S PS
Sbjct: 120 VESFNGSLLAEPWQVRTQSGDPYKVFTPFWRSLAQMPFP--APHPAPKKC--AGLSPLPS 175
Query: 186 DTLVFED--ESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
D L S+ L W PG A L FI+ ++ Y + R + TS L
Sbjct: 176 DDLASWSLRPSKPDWAGGLRATWQPGERAAQSRLAAFIDDAMVGYREARDIPAAEGTSRL 235
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SPHLH+GEVS +++ V A + +G E+ FL+ + R+++ ++ F+ P
Sbjct: 236 SPHLHWGEVSPHRIWSAVEA-----ATAAHPSGAEAGRAFLRELAWRDFAHHLLFHWPDI 290
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
F W D F AW +G TGYP+VDAGMR+LW TGW+H+R+R++ +SF V
Sbjct: 291 ARENWKSQFDAFPWKEDTAAFTAWTKGETGYPIVDAGMRQLWQTGWMHNRVRMIAASFLV 350
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WR G ++F +TL+DADL + WQ+++G+ D + RI NP +G KFD +G
Sbjct: 351 KHLMVDWRRGAEWFENTLVDADLAVNRASWQWVAGSGADAAPYFRIFNPVLQGEKFDGDG 410
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSE 483
YVR ++PELA+L +IH PW AP++ L AGI LG YP P+V A+ R A +
Sbjct: 411 AYVRAFVPELAKLDARFIHKPWAAPDAELSKAGIALGRTYPKPLVDHGHARARALAAYEQ 470
Query: 484 M 484
+
Sbjct: 471 I 471
>gi|238028072|ref|YP_002912303.1| deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1]
gi|237877266|gb|ACR29599.1| Deoxyribodipyrimidine photolyase [Burkholderia glumae BGR1]
Length = 489
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 188/483 (38%), Positives = 260/483 (53%), Gaps = 18/483 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
++VWFR DLRV DNPALA +G + V ++ E +G G RWWL +L LD+
Sbjct: 12 ALVWFRDDLRVTDNPALARAAESGRPL-VCVYVFERDGTRPLGGAVRWWLDGALRSLDAK 70
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L + G LV D ++ + GA +++N YD L+ D K +L GI V
Sbjct: 71 LAAQGGGLVVLEG-DERETIAALAGELGAGAVYWNRRYDGLARETDAALKRSLKEAGIEV 129
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM------ 180
SFN LL+EPW++ G F F A+W + P APL P + +
Sbjct: 130 ESFNGALLHEPWEIRTGSGGAFQVFTAYWRAARAAGELP-APLAEPAKWRFHRLPEALAR 188
Query: 181 --SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
+R + L+ G L AW P L F++ + Y R + D
Sbjct: 189 RATRIDALGLLPVRPDWAGG---LREAWEPSEEGGLARLEAFLDKQIRGYGDARDRPDRP 245
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LSP+L FG++S R+V+H + EG A + FL +G RE++ + +
Sbjct: 246 ATSRLSPYLRFGQLSARQVWHAAQAA----GREGGAAVAADIEKFLSELGWREFNTSLLY 301
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
+ P R W DE F AW +GRTGYPLVDAGMRELWATGW+H+R+R+V
Sbjct: 302 HFPELPMRNYRDRFDAMPWRSDEAAFAAWCRGRTGYPLVDAGMRELWATGWMHNRVRMVT 361
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF +K L + WR G ++FWDTL+DAD+ +++ WQ+++G+ D + RI NP +G K
Sbjct: 362 ASFLIKHLLIDWRAGERWFWDTLVDADIANNSANWQWVAGSGADAAPYFRIFNPVMQGRK 421
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FDP+G YVRRW+PELA LP + IH PW A VL+AAG+ LG YP PIV DAA+ R
Sbjct: 422 FDPDGAYVRRWVPELAGLPADAIHEPWRAKPVVLEAAGVVLGRTYPAPIVDHDAARKRAL 481
Query: 479 EAL 481
AL
Sbjct: 482 GAL 484
>gi|229151347|ref|ZP_04279551.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1550]
gi|228632137|gb|EEK88762.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1550]
Length = 476
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 170/480 (35%), Positives = 267/480 (55%), Gaps = 16/480 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ V+I ++ + G ++WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYI----QDETFSIGSAAKWWLHHAIIDVQKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ R ++ +L ++K T +++N YDP L + + K L +GI +
Sbjct: 62 EALGSTLII-RKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDKGIICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM-SRCPSD 186
FN+ LL EPW + + F F+ F P R+ S S P+
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYN-----AFQKQVIPKPISRVQSIKWGSSLPTS 175
Query: 187 TLVFEDESEKGS--NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
V E + + W P A K F + L+ YS+ R D S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQNVHSMLA 235
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
P+L F ++SV+ +FH + K ++ VN F++ + RE+S Y+ +++P++
Sbjct: 236 PYLSFSQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTV 292
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
+PL + F W +E + W++G TGYP +DAGMRELW TG++H+R R+ V+SF VK
Sbjct: 293 YKPLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD NGE
Sbjct: 353 HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGE 412
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
Y+R+W+PEL +P ++IH PW APE +LQ A I+LG+ YP+PIV AA+ R A M
Sbjct: 413 YIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNTYPYPIVDHKAARERALCAYKSM 472
>gi|229075148|ref|ZP_04208142.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18]
gi|228707925|gb|EEL60104.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock4-18]
Length = 476
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 171/480 (35%), Positives = 267/480 (55%), Gaps = 16/480 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL ++G V+ V++ +E P G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVVPVYV--HDETFPM--GSASKWWLHHAIIDVKKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ R ++ + +++ G T +++N YDP L + + K L +GI +
Sbjct: 62 ETLGSTLII-RKGNTQEEIFSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDKGIVCK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM-SRCPSD 186
FN+ LL EPW + + F F+ F P R+ S + P+
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYNA-----FQKQVIPKPISRVQSIKWGNSLPAS 175
Query: 187 TLVFEDESEKGS--NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
V E + + W P A K F + L+ YS+ R + S L+
Sbjct: 176 LFVSELHLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNVHSMLA 235
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
P+L FG++SV+ +FH + K ++ VN F++ + RE+S Y+ +++P++
Sbjct: 236 PYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTV 292
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
+PL + F W +E + W++G+TGYP +DAGMRELW TG++H+R R+ V+SF VK
Sbjct: 293 YKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD NGE
Sbjct: 353 HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGE 412
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
Y+RRW+PEL +P ++IH PW APE +LQ A I+LG YPFPIV AA+ R A M
Sbjct: 413 YIRRWVPELRDIPNKYIHKPWEAPEHILQKANIQLGHTYPFPIVDHKAARERALCAYKSM 472
>gi|423458833|ref|ZP_17435630.1| hypothetical protein IEI_01973 [Bacillus cereus BAG5X2-1]
gi|401145461|gb|EJQ52985.1| hypothetical protein IEI_01973 [Bacillus cereus BAG5X2-1]
Length = 476
Score = 323 bits (828), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 170/479 (35%), Positives = 268/479 (55%), Gaps = 14/479 (2%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ V++ ++ + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDETFSIGSASKWWLHHAIIDVKKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ R +++ +L +++ G T +++N YDP L + + K L +GI +
Sbjct: 62 EALGSTLII-RKGNTLEEILSLIEQLGITAVYWNICYDPDRLQCNQKMKIMLEEKGIICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
FN+ LL EPW + + F F+ + P+ +RI G S P+
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQ--EIPKPISKVQRIKGG--SSLPASL 176
Query: 188 LVFEDESEKGS--NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
V E + + W P A KA F + L YS+ R + S L+P
Sbjct: 177 SVSELHLLPTIPWTSHIESIWEPTEEGAYKACKKFFSSKLASYSEGRDFPNQNAHSMLAP 236
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
+L FG++SVR ++H + K ++ VN F++ RE+S Y+ +++P++
Sbjct: 237 YLSFGQISVRWMYHYLINKS---TERQCSLFEKQVNSFIRQFIWREFSYYLLYHYPFTVY 293
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
+PL + F W +E W++G TGYP +DAGMRELW TG++H+R R+ V+SF VK
Sbjct: 294 KPLNKSFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKH 353
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD NGEY
Sbjct: 354 LLIPWQEGAKWFLDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEY 413
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
+R+W+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R A M
Sbjct: 414 IRKWVPELKDMPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVDHKAARERALCAYKSM 472
>gi|228915743|ref|ZP_04079325.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228843918|gb|EEM88985.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 476
Score = 323 bits (828), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 166/486 (34%), Positives = 275/486 (56%), Gaps = 28/486 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL ++G V+ ++++ + + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVLPLYVY----DETFSIGSASKWWLHHTIIDVKRQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ R +++ +L ++K G T +++N YDP L + + K L +GI +
Sbjct: 62 ETLGSTLII-RKGNTLEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDKGITCK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLL----PPKRINSGD 179
FN+ LL EPW + + F AF ++ +S P + P ++ +
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPASLSVSE 180
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+ P+ ES W P A K F + L+ YS+ R +
Sbjct: 181 LHLLPTIPWTSHMES----------IWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNA 230
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKA-GDESVNLFLKSIGLREYSRYMSF 298
S L+P+L FG++SV+ ++H + ++ +NE + ++ VN F++ RE+S Y+ +
Sbjct: 231 HSMLAPYLSFGQISVKLIYHYL----INKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLY 286
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
++P++ +PL + + F W +E + W++G TGYP +DAGMRELW TG++H+R R+ V
Sbjct: 287 HYPFTVNKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAV 346
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G K
Sbjct: 347 ASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEK 406
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FD +GEY+R+W+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R
Sbjct: 407 FDKDGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERAL 466
Query: 479 EALSEM 484
A M
Sbjct: 467 CAYKSM 472
>gi|222096635|ref|YP_002530692.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1]
gi|221240693|gb|ACM13403.1| deoxyribodipyrimidine photolyase [Bacillus cereus Q1]
Length = 476
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 167/486 (34%), Positives = 274/486 (56%), Gaps = 28/486 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL ++G V+ V++ + + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSIGSASKWWLHHTIIDVKRQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ R +++ +L ++K G T +++N YDP L + + K L +GI +
Sbjct: 62 EALGSTLII-RKGNTLEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDKGITCK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLL----PPKRINSGD 179
FN+ LL EPW + + F AF ++ +S P + P ++ +
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPASLSVSE 180
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+ P+ ES W P A K F + L+ YS+ R +
Sbjct: 181 LHLLPTIPWTSHMES----------IWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNA 230
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKA-GDESVNLFLKSIGLREYSRYMSF 298
S L+P+L FG++SV+ ++H + ++ +NE + ++ VN F++ RE+S Y+ +
Sbjct: 231 HSMLAPYLSFGQISVKLMYHYL----INKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLY 286
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
++P++ +PL + + F W +E + W++G TGYP +DAGMRELW TG++H+R R+ V
Sbjct: 287 HYPFTVYKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAV 346
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G K
Sbjct: 347 ASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEK 406
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FD +GEY+R+W+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R
Sbjct: 407 FDKDGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERAL 466
Query: 479 EALSEM 484
A M
Sbjct: 467 CAYKSM 472
>gi|206974530|ref|ZP_03235446.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
H3081.97]
gi|206747173|gb|EDZ58564.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
H3081.97]
Length = 476
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 167/486 (34%), Positives = 276/486 (56%), Gaps = 28/486 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL ++G V+ ++++ + + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVLPLYVY----DETFSIGSASKWWLHHTIIDVKRQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ R +++ +L +++ G T +++N YDP L + + K L +GI +
Sbjct: 62 EALGSTLII-RKGNTMEEILSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDKGITCK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLL----PPKRINSGD 179
FN+ LL EPW + + F AF ++ +S P + P ++ +
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPASLSVSE 180
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+ P+ ES W P A K F + L+ YS+ R +
Sbjct: 181 LHLLPTIPWTSHMES----------IWEPTEEGAYKTCKKFFSSKLVSYSEGRDFPNQNA 230
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKA-GDESVNLFLKSIGLREYSRYMSF 298
S L+P+L FG++SV+ ++H + ++ +NE + ++ VN F++ + RE+S Y+ +
Sbjct: 231 HSMLAPYLSFGQISVKLMYHYL----INKSNEKQCSLFEKQVNSFIRQLIWREFSYYLLY 286
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
++P++ +PL + F W +E + W++G+TGYP +DAGMRELW TG++H+R R+ V
Sbjct: 287 HYPFTVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAV 346
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G K
Sbjct: 347 ASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEK 406
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FD NGEY+RRW+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R
Sbjct: 407 FDKNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERAL 466
Query: 479 EALSEM 484
A M
Sbjct: 467 CAYKSM 472
>gi|228953466|ref|ZP_04115511.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|423425266|ref|ZP_17402297.1| hypothetical protein IE5_02955 [Bacillus cereus BAG3X2-2]
gi|423506140|ref|ZP_17482730.1| hypothetical protein IG1_03704 [Bacillus cereus HD73]
gi|449089482|ref|YP_007421923.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|228806205|gb|EEM52779.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|401112481|gb|EJQ20359.1| hypothetical protein IE5_02955 [Bacillus cereus BAG3X2-2]
gi|402449071|gb|EJV80909.1| hypothetical protein IG1_03704 [Bacillus cereus HD73]
gi|449023239|gb|AGE78402.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 476
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 166/480 (34%), Positives = 268/480 (55%), Gaps = 16/480 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ V++ ++ + G ++WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDETFSIGSAAKWWLHHAIIDVQKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
++LG++L+ R ++ +L ++K T +++N YDP L + + K L +GI +
Sbjct: 62 KALGSTLII-RKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDKGIICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
FN+ LL EPW + + F F+ F P R+ S +
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYN-----AFQKQVIPKPINRVQSIKWGNSLPAS 175
Query: 188 LVFEDESEKGS---NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
L + + + + W P A K F + L YS+ R + S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNVHSMLA 235
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
P+L FG++SV+ +FH + K + ++ VN F++ + RE+S Y+ +++P++
Sbjct: 236 PYLSFGQISVKLMFHYLINKS---TERQSSLFEKQVNSFIRQLIWREFSYYLLYHYPFTV 292
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
+PL + F W +E + W++G TGYP +DAGMRELW TG++H+R R+ V+SF VK
Sbjct: 293 YKPLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD NGE
Sbjct: 353 HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGE 412
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
Y+RRW+PEL +P ++IH PW APE +LQ + I+LG+ YP+PIV AA+ R A M
Sbjct: 413 YIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKSM 472
>gi|206969086|ref|ZP_03230041.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH1134]
gi|206736127|gb|EDZ53285.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH1134]
Length = 476
Score = 323 bits (827), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 167/480 (34%), Positives = 266/480 (55%), Gaps = 16/480 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ V++ ++ + G ++WWL+H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDETFSIGSAAKWWLRHAIMDVQKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
++LG++L+ R ++ +L ++K T +++N YDP L + + K L +GI +
Sbjct: 62 KALGSTLII-RKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDKGIICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
FN+ LL EPW + + F F+ F P R+ S +
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYN-----AFQKQVIPKPISRVQSIKWGNSLPAS 175
Query: 188 LVFEDESEKGS---NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
L + + + + W P A K F + L YS+ R D S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLASYSEGRDFPDQNVHSMLA 235
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
P+L FG++SV+ +FH + K ++ VN F++ + RE+S Y+ +++P++
Sbjct: 236 PYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTV 292
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
+PL + F W +E W++G TGYP +DAGMRELW TG++H+R R+ V+SF VK
Sbjct: 293 SKPLNKSFENFPWDKEEELLSVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD NGE
Sbjct: 353 HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGE 412
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
Y+RRW+PEL+ +P ++IH PW AP +LQ A I+LG YP+PIV AA+ R A M
Sbjct: 413 YIRRWVPELSDIPNKYIHKPWEAPAHILQKANIKLGDTYPYPIVDHKAARERALCAYKSM 472
>gi|423551107|ref|ZP_17527434.1| hypothetical protein IGW_01738 [Bacillus cereus ISP3191]
gi|401188440|gb|EJQ95508.1| hypothetical protein IGW_01738 [Bacillus cereus ISP3191]
Length = 476
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 166/486 (34%), Positives = 274/486 (56%), Gaps = 28/486 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL ++G V+ V++ + + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVLPVYV----HDETFSIGSASKWWLHHTIIDVKRQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ R +++ +L +++ G T +++N YDP L + + K L +GI +
Sbjct: 62 EALGSTLII-RKGNTMEEILSLIEQLGITAVYWNICYDPERLQFNQKMKMMLEDKGITCK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLL----PPKRINSGD 179
FN+ LL EPW + + F AF ++ +S P + P ++ +
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPASLSVSE 180
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+ P+ ES W P A K F + L+ YS+ R +
Sbjct: 181 LHLLPTILWTSHMES----------IWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNA 230
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKA-GDESVNLFLKSIGLREYSRYMSF 298
S L+P+L FG++SV+ ++H + ++ +NE + ++ VN F++ RE+S Y+ +
Sbjct: 231 HSMLAPYLSFGQISVKLIYHYL----INKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLY 286
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
++P++ +PL + + F W +E + W++G TGYP +DAGMRELW TG++H+R R+ V
Sbjct: 287 HYPFTVYKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAV 346
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G K
Sbjct: 347 ASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEK 406
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FD +GEY+R+W+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R
Sbjct: 407 FDKDGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERAL 466
Query: 479 EALSEM 484
A M
Sbjct: 467 CAYKSM 472
>gi|423436667|ref|ZP_17413648.1| hypothetical protein IE9_02848 [Bacillus cereus BAG4X12-1]
gi|401122403|gb|EJQ30190.1| hypothetical protein IE9_02848 [Bacillus cereus BAG4X12-1]
Length = 476
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 169/480 (35%), Positives = 268/480 (55%), Gaps = 16/480 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ V++ ++ + G ++WWL+H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDETFSIGSAAKWWLRHAIMDVQKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
++LG++L+ R ++ +L ++K T +++N YDP L + + K L +GI +
Sbjct: 62 KALGSTLII-RKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDKGIICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM-SRCPSD 186
FN+ LL EPW + + F F+ F P R+ S S P+
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYN-----AFQKQVIPKPISRVQSIKWGSSLPAS 175
Query: 187 TLVFEDESEKGS--NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
V E + + W P A K F + L YS+ R + S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
P+L FG++SV+ +FH + K ++ VN F++ + RE+S Y+ +++P++
Sbjct: 236 PYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTV 292
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
+PL + F W +E W++G TGYP +DAGMRELW TG++H+R R+ V+SF VK
Sbjct: 293 SKPLNKSFENFPWDKEEELLSVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD NGE
Sbjct: 353 HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGE 412
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
Y+RRW+PEL +P ++IH PW APE +LQ + I+LG+ YP+PIV AA+ R A M
Sbjct: 413 YIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKNM 472
>gi|423413073|ref|ZP_17390193.1| hypothetical protein IE1_02377 [Bacillus cereus BAG3O-2]
gi|423431142|ref|ZP_17408146.1| hypothetical protein IE7_02958 [Bacillus cereus BAG4O-1]
gi|401102633|gb|EJQ10619.1| hypothetical protein IE1_02377 [Bacillus cereus BAG3O-2]
gi|401118167|gb|EJQ25999.1| hypothetical protein IE7_02958 [Bacillus cereus BAG4O-1]
Length = 476
Score = 322 bits (826), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 166/480 (34%), Positives = 267/480 (55%), Gaps = 16/480 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ V++ ++ + G ++WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDETFSIGSAAKWWLHHAIIDVQKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
++LG++L+ R ++ +L ++K T +++N YDP L + + K L +GI +
Sbjct: 62 KALGSTLII-RKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDKGIICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
FN+ LL EPW + + F F+ F P R+ S +
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYN-----AFQKQVIPKPISRVQSIKWGNSLPAS 175
Query: 188 LVFEDESEKGS---NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
L + + + + W P A K F + L+ YS+ R D S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQNVHSMLA 235
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
+L FG++SV+ +FH + K ++ VN F++ + RE+S Y+ +++P++
Sbjct: 236 TYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTV 292
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
+PL + F W +E + W++G TGYP +DAGMRELW TG++H+R R+ V+SF VK
Sbjct: 293 YKPLNKSFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD NGE
Sbjct: 353 HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGE 412
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
Y+RRW+PEL +P ++IH PW APE +LQ + I+LG+ YP+PIV AA+ R A M
Sbjct: 413 YIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKSM 472
>gi|386828473|ref|ZP_10115580.1| deoxyribodipyrimidine photolyase [Beggiatoa alba B18LD]
gi|386429357|gb|EIJ43185.1| deoxyribodipyrimidine photolyase [Beggiatoa alba B18LD]
Length = 477
Score = 322 bits (826), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 175/476 (36%), Positives = 265/476 (55%), Gaps = 26/476 (5%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFRRDLR++DNPAL V G +I ++I AP EEG + G SRWWL HSL+
Sbjct: 4 ALVWFRRDLRLQDNPALMQAVADGHQIIPIYIHAPTEEGQWQVGSASRWWLHHSLTAFAQ 63
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+ L + +S+S+L +V+ T A +++N LY+P + RD + K+ L AQG+
Sbjct: 64 QWQEKQGQLFCFQG-ESLSTLQQVIVQTQAVAVYWNRLYEPAMIQRDSQIKQCLKAQGLM 122
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEK----CLSMPFDPDAPLLPPKRINSGDMS 181
V+SFNA LL+EP V + Q P+ F FW+ +S+P + P N+ +
Sbjct: 123 VKSFNASLLHEPAQVLNKQESPYRVFTPFWKTSQQLAISLPLSQLETICVP---NNFKLE 179
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRR-KADSATT 240
+ L + S + W G +A L + ++EY+ R A+ +
Sbjct: 180 TISINKLQLLPKITWDSG--FYQTWQVGEVHAQHLLNQWCEQAMMEYATQRDFPANPVSV 237
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP+LHFGE+S R+VFH + Q N A N +L+ + RE++ Y+ ++
Sbjct: 238 SHLSPYLHFGELSPRQVFHAILKAQAL-----NPAITTGGNAYLRQLYWREFAHYLLYHF 292
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P++ E+ L F + + AW++G TGYP++DAGMRELW TGW+H+R+R++V+S
Sbjct: 293 PHTPEKALYSQFDNFPYQENTELLMAWQRGETGYPIIDAGMRELWTTGWMHNRVRMLVAS 352
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L LPW+ G ++FWDTL+DADL ++ LGWQ+++G D + RI NP + KFD
Sbjct: 353 FLTKNLLLPWQTGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYYRIFNPTLQSVKFD 412
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
P+G+Y+RRWLP L L + IH P + + + YP PIV K +
Sbjct: 413 PDGQYIRRWLPVLKYLDNQQIHAPTDNGQRI---------QGYPCPIVDYKTTKAQ 459
>gi|312114970|ref|YP_004012566.1| DNA photolyase FAD-binding protein [Rhodomicrobium vannielii ATCC
17100]
gi|311220099|gb|ADP71467.1| DNA photolyase FAD-binding protein [Rhodomicrobium vannielii ATCC
17100]
Length = 484
Score = 322 bits (825), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 183/466 (39%), Positives = 270/466 (57%), Gaps = 14/466 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++V FRRDLR+ D+PAL+A GA V+ V+I E G + G SRWWL SL L +
Sbjct: 10 ALVLFRRDLRLADHPALSAAAETGAPVLPVYILDDETPGRWRMGGASRWWLYQSLRSLGA 69
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L + G+ LV R ++ L E+++ TGA + F Y+P + R K +L A+G++
Sbjct: 70 DLEARGSRLVL-RHGETKRVLGELIEETGARSVLFTRGYEPYQRALEGRLKPSLEARGVS 128
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
+R F +L EP + + G+PF F F+ + LS P PL P+++ + D S S
Sbjct: 129 LRRFGGQILVEPESIANLAGEPFRVFTPFF-RALSQRGAPATPLPAPQKLAAPD-SWPRS 186
Query: 186 D---TLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
D +L E + + A AW PG + A + LT FI L Y R + TS
Sbjct: 187 DALASLALEPTRPDWAGGIRA-AWRPGETAARERLTAFIEAALPSYRTRRDEPGIDGTSR 245
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHL FGE+ R+++H V+ + + + +L+ +G RE+S ++ F+ P+
Sbjct: 246 LSPHLAFGEIGPRQIWHAVQAAAEA------AGDHAAADAYLREVGWREFSYHLLFHFPH 299
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
E P F W D +AW++GRTGYP+VDAGMR+LW TGW+H+R+R++V+SF
Sbjct: 300 LPEAPFRPEFTAFPWRDDADALEAWQRGRTGYPIVDAGMRQLWQTGWMHNRVRMIVASFL 359
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
+K L PW+ G +FWDTL+DADL ++A WQ+++G+ D + RI NP +G KFDP
Sbjct: 360 IKHLLSPWQTGADWFWDTLVDADLANNAASWQWVAGSGADAAPYFRIFNPVLQGEKFDPR 419
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
G+YVR ++PELA+LP IH PW A + L+ AG+ LG +P PIV
Sbjct: 420 GDYVRAFVPELAKLPASLIHKPWTASAAALRDAGVTLGETWPHPIV 465
>gi|410621442|ref|ZP_11332289.1| deoxyribodipyrimidine photo-lyase [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410158957|dbj|GAC27663.1| deoxyribodipyrimidine photo-lyase [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 481
Score = 322 bits (825), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 193/486 (39%), Positives = 272/486 (55%), Gaps = 27/486 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIW---APEEEGPYYPGRVSRWWLKHSLSHLD 64
IVWFR+DLR+ DNPAL+ V G +I VFI APE G S+WWL HSL
Sbjct: 10 IVWFRQDLRLTDNPALSLAVDNGTIIPVFILDDDAPENAAL---GGASQWWLHHSLL--- 63
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
S +SL T L+ +R + ++ L+E+ +A A + +N LY+P RD K L +GI
Sbjct: 64 SLSKSLNTKLLIRRG-EPLAILIEIAEAFSADSVIWNRLYEPWQRERDENIKTVLKNRGI 122
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEK-CLSMPFDPDAPLLPPKRINSGD---- 179
A +S N LL+EP V P+ F ++ K CL+ P P+ PK I D
Sbjct: 123 AAKSLNGSLLWEPMSVLKKDETPYKVFTPYYRKGCLTRQ-APRFPIARPKEIQIADGVNF 181
Query: 180 -MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
M S L+ + E K A W PG A L FI+ Y R
Sbjct: 182 SMDALTSLQLIPKTEWYKDIEA----QWQPGEEGAANRLQRFISEAATSYQDARNMPAVK 237
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LSPHLHFGEVS + ++ ++ N ++ ++++L +G RE+S Y+ F
Sbjct: 238 GTSLLSPHLHFGEVSPNQAWYAIQ------GAFENAFDNKDLDVYLSELGWREFSYYLLF 291
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
+ P + FF W KAW+ G TG P++DAGMREL+ TG++H+R+R+VV
Sbjct: 292 HWPEIQHKNFNAKFDFFQWRSSPDDLKAWQFGNTGVPMIDAGMRELYQTGYMHNRVRMVV 351
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
SF VK L + WR G ++FWDTLLDAD+ S++ GWQ+++G+ D F RI NP +G K
Sbjct: 352 GSFLVKNLLIDWREGERWFWDTLLDADMASNSAGWQWVAGSGADAAPFFRIFNPILQGEK 411
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FD GEYV+++ PEL RLP ++IH PW AP +L+A G+ELG NYP PIV + ++ R
Sbjct: 412 FDKEGEYVKKYCPELKRLPKQFIHKPWEAPPEILKACGVELGKNYPNPIVDLKLSRKRAL 471
Query: 479 EALSEM 484
+AL+++
Sbjct: 472 DALAQL 477
>gi|423398956|ref|ZP_17376156.1| hypothetical protein ICU_04649 [Bacillus cereus BAG2X1-1]
gi|423410080|ref|ZP_17387228.1| hypothetical protein ICY_04764 [Bacillus cereus BAG2X1-3]
gi|401645588|gb|EJS63241.1| hypothetical protein ICU_04649 [Bacillus cereus BAG2X1-1]
gi|401650994|gb|EJS68562.1| hypothetical protein ICY_04764 [Bacillus cereus BAG2X1-3]
Length = 476
Score = 322 bits (825), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 170/482 (35%), Positives = 269/482 (55%), Gaps = 20/482 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ V+I ++ + G ++WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYI----QDATFSIGSAAKWWLHHAVIDVKKQL 61
Query: 68 RSLGTSLVTK--RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LG++L+ + R+ + + SL+E + T +++N YDP L + + K L +GI
Sbjct: 62 EALGSTLIIRKGRTEEEILSLIEQLDITA---VYWNICYDPDRLQSNQKMKMMLEGKGIT 118
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
+ FN+ LL EPW + + F F+ F P R+ S
Sbjct: 119 CKEFNSHLLLEPWIIKKKNNTEYKVFTPFYN-----AFQKQVIPKPISRVQSIKWGNSLP 173
Query: 186 DTLVFEDESEKGS---NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+L + + + + W A KA F + L+ YS+ R D S
Sbjct: 174 ASLSVSELHLLPTIPWTSHMEAIWDSTEEGAYKAFKKFFSSKLVSYSEGRDFPDQNVHSM 233
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
L+P+L FG++SV+ +FH + K ++ VN F++ + RE+S Y+ +++P+
Sbjct: 234 LAPYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPF 290
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ +PL + F W +E + W++G+TGYP +DAGMRELW TG++H+R R+ V+SF
Sbjct: 291 TVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFL 350
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD N
Sbjct: 351 VKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKN 410
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
GEY+RRW+PEL +P ++IH PW AP+ +LQ A I+LG YPFPIV AA+ R A
Sbjct: 411 GEYIRRWVPELRDIPNKYIHKPWEAPKHILQKANIKLGDTYPFPIVDHKAARERALCAYK 470
Query: 483 EM 484
M
Sbjct: 471 SM 472
>gi|374292340|ref|YP_005039375.1| deoxyribodipyrimidine photo-lyase [Azospirillum lipoferum 4B]
gi|357424279|emb|CBS87146.1| Deoxyribodipyrimidine photo-lyase [Azospirillum lipoferum 4B]
Length = 494
Score = 322 bits (825), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 194/481 (40%), Positives = 267/481 (55%), Gaps = 21/481 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGV-----RAGAVIAVFIWAPEEEG-----PYYPGRVSRWWLK 57
IVWFR DLR+ DNPAL A R VI ++I EE G P+ G RWWL
Sbjct: 7 IVWFRNDLRLADNPALTAAAQASAERGAPVIPLYI-LEEETGDPPCDPWPLGGAQRWWLH 65
Query: 58 HSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKE 117
SL L + G+ L+ +R + + L ++ TGA + +N Y P RD KE
Sbjct: 66 GSLERLATCCARHGSPLLLRRG-EPGAVLDALIAETGAECVLWNRRYTPAQTARDAAIKE 124
Query: 118 ALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS 177
L A+GI RSFNA LL EPW V + G PF F FW + LS +P P P + +
Sbjct: 125 RLKARGIDARSFNAGLLAEPWTVRNKSGGPFKVFTPFW-RHLSATLNPPLPTRAPSALKA 183
Query: 178 GDMSRCPSDTLVFED--ESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
+ D L ++ A L + W PG + A L F++GP+ Y+ R +
Sbjct: 184 PAKAPA-GDALDSWGLLPTKPDWAAGLRKRWVPGETAALSHLADFLDGPVGAYATERDRP 242
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
D TS LSP+L FGE+ R+V+H R + ++ FL+ +G RE+ +
Sbjct: 243 DRDGTSALSPYLAFGEIGPRQVWHAARHAADARPELA-----PGIDSFLREVGWREFQYH 297
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+ + P +RPL F W D AW++GRTGYP+VDAGMR+LW TGW+H+R+R
Sbjct: 298 LLHHAPELPDRPLDPRFADFPWREDAAGLLAWQRGRTGYPIVDAGMRQLWETGWMHNRVR 357
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++V+SF VK L LPW+ G ++FWDTL+DADL +A WQ+++G D F R+ NP +
Sbjct: 358 MIVASFLVKDLLLPWQEGERWFWDTLVDADLAQNAGNWQWVAGCGADAAPFFRVFNPVLQ 417
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFDP G+YVRR++PEL RLP WIH PW AP +L+ AG+ LG +YP PI+ A+
Sbjct: 418 GEKFDPEGDYVRRYVPELDRLPPRWIHQPWAAPTELLRQAGVRLGDDYPRPIIDHGVARD 477
Query: 476 R 476
R
Sbjct: 478 R 478
>gi|330817717|ref|YP_004361422.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3]
gi|327370110|gb|AEA61466.1| Deoxyribodipyrimidine photolyase [Burkholderia gladioli BSR3]
Length = 487
Score = 322 bits (825), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 190/482 (39%), Positives = 263/482 (54%), Gaps = 14/482 (2%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFR DLR+ DNPALA +G V ++ E EG G +RWWL +L LD+
Sbjct: 9 AAIVWFRDDLRLTDNPALARAAESGRPF-VCVYVLEREGTRPLGGAARWWLDGALRSLDA 67
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SL G L+ D ++ + + A +++N YD ++ D K +L GI
Sbjct: 68 SLAGHGGRLLVLEG-DERETIAALAEELDAGAVYWNRRYDGIARETDGALKRSLKEAGIE 126
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPK--RINS--GDMS 181
SFN LL EPW++ G F F A+W L D APL P R ++ ++
Sbjct: 127 AESFNGALLREPWELQTGSGGAFQVFTAYWRAALKSG-DVSAPLAEPSTWRFHTLPASLA 185
Query: 182 R--CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
R D L + L AW P A + L F++ + Y + R + D
Sbjct: 186 RRALKIDALGLLPTRPDWAGGL-REAWVPTEEAALELLERFLDKKIRGYGEARDRPDRPA 244
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP+L FG++S R+V+H ++ A EG A + F+ +G RE+ + ++
Sbjct: 245 TSRLSPYLRFGQLSARQVWH----AAMAAAREGGAAVAADIEKFVSELGWREFDTSLLYH 300
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P R W DE F AW +GRTGYPLVDAGMRELW TGW+H+R+R+VV+
Sbjct: 301 FPELPTRNYRERFDAMPWRDDEAGFTAWCRGRTGYPLVDAGMRELWTTGWMHNRVRMVVA 360
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF +K L + WR G ++FWDTL+DAD+ +++ WQ+++G D + RI NP +G KF
Sbjct: 361 SFLIKHLLIDWRAGERWFWDTLVDADIANNSANWQWVAGCGADAAPYFRIFNPVTQGRKF 420
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP G+YVRRW+PELARLP + IH PW A VL+AAG+ LG YP PIV DAA+ R
Sbjct: 421 DPEGDYVRRWVPELARLPADAIHEPWRAKPIVLEAAGVVLGQTYPEPIVDHDAARQRALG 480
Query: 480 AL 481
AL
Sbjct: 481 AL 482
>gi|301054669|ref|YP_003792880.1| deoxyribodipyrimidine photolyase [Bacillus cereus biovar anthracis
str. CI]
gi|300376838|gb|ADK05742.1| deoxyribodipyrimidine photolyase [Bacillus cereus biovar anthracis
str. CI]
Length = 476
Score = 322 bits (825), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 166/486 (34%), Positives = 274/486 (56%), Gaps = 28/486 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL ++G V+ V++ + + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVLPVYV----HDETFSIGSASKWWLHHTIIDVKRQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ R +++ +L +++ G T +++N YDP L + + K L +GI +
Sbjct: 62 EALGSTLII-RKGNTMEEILSLIEQLGITAVYWNICYDPERLQFNQKMKMMLEDKGITCK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLL----PPKRINSGD 179
FN+ LL EPW + + F AF ++ +S P + P ++ +
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPASLSVSE 180
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+ P+ ES W P A K F + L+ YS+ R +
Sbjct: 181 LHLLPTIPWTSHMES----------IWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNA 230
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKA-GDESVNLFLKSIGLREYSRYMSF 298
S L+P+L FG++SV+ ++H + ++ +NE + ++ VN F++ RE+S Y+ +
Sbjct: 231 HSMLAPYLSFGQISVKLIYHYL----INKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLY 286
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
++P++ +PL + + F W +E + W++G TGYP +DAGMRELW TG++H+R R+ V
Sbjct: 287 HYPFTVYKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAV 346
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G K
Sbjct: 347 ASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEK 406
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FD +GEY+R+W+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R
Sbjct: 407 FDKDGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERAL 466
Query: 479 EALSEM 484
A M
Sbjct: 467 CAYKSM 472
>gi|254504495|ref|ZP_05116646.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
DFL-11]
gi|222440566|gb|EEE47245.1| deoxyribodipyrimidine photolyase family [Labrenzia alexandrii
DFL-11]
Length = 478
Score = 322 bits (824), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 187/476 (39%), Positives = 273/476 (57%), Gaps = 22/476 (4%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIW-APEEEGPYYP-GRVSRWWLKHSLSHL 63
+IVWFR+DLRV DNPAL R G V+ V+I P++ G +P G SRWWL HSL+ L
Sbjct: 2 TTIVWFRQDLRVSDNPALHEATRRGPVLPVYILETPDQSGDEHPLGGASRWWLHHSLAAL 61
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L LV R + + + E+V+ TGA +++N Y+P ++ RD KE+L
Sbjct: 62 KEDL----PGLVFLRGS-ARHLIPELVQETGADAVYWNRCYEPHAIERDSALKESLKTDL 116
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I +SF A LL+EPWDV G P+ ++ FW+ + PD PL P IN R
Sbjct: 117 IDAKSFKASLLFEPWDVETKTGGPYKVYSPFWKAAQKISV-PD-PLPAPAEINFTAYDRG 174
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
+ + + ++ W PG + A L F++ L Y R + D S L
Sbjct: 175 DNLSDLELLPTKPNWAEGWEDIWQPGAAGAKDRLIEFLDHGLSGYGDKRNRPDLPNVSRL 234
Query: 244 SPHLHFGEVSVRKVFHLVR---IKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
SPHLHFG++S ++V+ + ++ S +++G+K FL I RE+S ++ +++
Sbjct: 235 SPHLHFGDISPKQVWSATQHATARKSSLSSDGHK--------FLSEIAWREFSYHLLYHY 286
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P E+ + W E K W+ G TGYP+VDAGMRELW TG++H+R+R++ S
Sbjct: 287 PQLPEKNWRPAFDAYPWRESEEDLKKWQTGLTGYPMVDAGMRELWHTGYMHNRVRMLAGS 346
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F VK L+L W+ G +F DTL+DADL +++ WQ+++G+ D + RI NP +G KFD
Sbjct: 347 FLVKHLRLHWKHGEAWFRDTLVDADLANNSASWQWVAGSGADAAPYFRIFNPISQGPKFD 406
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
P+G+YVRRW+PELA+LPT+ + P+ AP SVL AG+ LG YP+PIV D K R
Sbjct: 407 PDGKYVRRWVPELAKLPTKHLFSPFEAPASVLSEAGVRLGETYPYPIV--DHGKAR 460
>gi|423655980|ref|ZP_17631279.1| hypothetical protein IKG_02968 [Bacillus cereus VD200]
gi|401292211|gb|EJR97875.1| hypothetical protein IKG_02968 [Bacillus cereus VD200]
Length = 476
Score = 321 bits (823), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 171/482 (35%), Positives = 268/482 (55%), Gaps = 20/482 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ V+I +E + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYI----QEETFSIGSASKWWLHHAVIDVKKQL 61
Query: 68 RSLGTSLVTK--RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LG++L+ + R+ + + SL+E + T +++N YDP L + + K L +GI
Sbjct: 62 EALGSTLIIRKGRTEEEILSLIEQLDITA---VYWNICYDPDRLQSNQKMKMMLEDKGII 118
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
+ FN+ LL EPW + + F F+ F P R+ S
Sbjct: 119 CKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-----AFQKQVIPKPISRVQSIKWGNSLP 173
Query: 186 DTLVFEDESEKGS---NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+L + + + + W P A K F + L+ YS+ R S
Sbjct: 174 ASLSVSELQLLPTIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQNVHSM 233
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
L+P+L FG++SV+ +FH + K ++ VN F++ + RE+S Y+ +++P+
Sbjct: 234 LAPYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPF 290
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ +PL + F W +E + W++G+TGYP +DAGMRELW TG++H+R R+ V+SF
Sbjct: 291 TVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFL 350
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD N
Sbjct: 351 VKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKN 410
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
GEY+RRW+PEL +P ++IH PW APE +LQ + I+LG YPFPIV AA+ R A
Sbjct: 411 GEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARERALCAYK 470
Query: 483 EM 484
M
Sbjct: 471 SM 472
>gi|217960578|ref|YP_002339142.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH187]
gi|229139780|ref|ZP_04268347.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26]
gi|423352873|ref|ZP_17330500.1| hypothetical protein IAU_00949 [Bacillus cereus IS075]
gi|423373016|ref|ZP_17350356.1| hypothetical protein IC5_02072 [Bacillus cereus AND1407]
gi|423567933|ref|ZP_17544180.1| hypothetical protein II7_01156 [Bacillus cereus MSX-A12]
gi|217063006|gb|ACJ77256.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH187]
gi|228643660|gb|EEK99924.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST26]
gi|401090879|gb|EJP99030.1| hypothetical protein IAU_00949 [Bacillus cereus IS075]
gi|401097348|gb|EJQ05371.1| hypothetical protein IC5_02072 [Bacillus cereus AND1407]
gi|401211272|gb|EJR18020.1| hypothetical protein II7_01156 [Bacillus cereus MSX-A12]
Length = 476
Score = 321 bits (822), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 164/486 (33%), Positives = 276/486 (56%), Gaps = 28/486 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL ++G V+ ++++ + + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVLPLYVY----DETFSIGSASKWWLHHTIIDVKRQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ R +++ +L +++ G T +++N YDP L + + K L +GI +
Sbjct: 62 EALGSTLII-RKGNTMEEILSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDKGITCK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLL----PPKRINSGD 179
FN+ LL EPW + + F AF ++ +S P + P ++ +
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPASLSVSE 180
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+ P+ ES W P A K F + L+ YS+ R +
Sbjct: 181 LHLLPTIPWTSHMES----------IWEPTEEGAYKTCKKFFSSKLVSYSEGRDFPNQNA 230
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKA-GDESVNLFLKSIGLREYSRYMSF 298
S L+P+L FG++SV+ ++H + ++ +NE + ++ VN F++ RE+S Y+ +
Sbjct: 231 HSMLAPYLSFGQISVKLMYHYL----INKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLY 286
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
++P++ +PL ++F W ++ + W++G+TGYP +DAGMRELW TG++H+R R+ V
Sbjct: 287 HYPFTVYKPLNKSFEYFPWNNEKKLLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAV 346
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G K
Sbjct: 347 ASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEK 406
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FD +GEY+R+W+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R
Sbjct: 407 FDKDGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERAL 466
Query: 479 EALSEM 484
A M
Sbjct: 467 CAYKSM 472
>gi|423605178|ref|ZP_17581071.1| hypothetical protein IIK_01759 [Bacillus cereus VD102]
gi|401244326|gb|EJR50690.1| hypothetical protein IIK_01759 [Bacillus cereus VD102]
Length = 476
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 165/486 (33%), Positives = 275/486 (56%), Gaps = 28/486 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL ++G V+ ++++ + + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVLPLYVY----DETFSIGSASKWWLHHTIIDVKRQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ R +++ +L +++ G T +++N YDP L + + K L +GI +
Sbjct: 62 EALGSTLII-RKGNTMEEILSLIEQLGITAVYWNICYDPERLQFNQKMKMMLEDKGITCK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLL----PPKRINSGD 179
FN+ LL EPW + + F AF ++ +S P + P ++ +
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYHAFQKQVISKPISKVQSIKWGSSLPASLSVSE 180
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+ P+ ES W P A K F + L+ YS+ R +
Sbjct: 181 LHLLPTIPWTSHMES----------IWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNA 230
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKA-GDESVNLFLKSIGLREYSRYMSF 298
S L+P+L FG++SV+ ++H + ++ +NE + ++ VN F++ RE+S Y+ +
Sbjct: 231 HSMLAPYLSFGQISVKLIYHYL----INKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLY 286
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
++P++ +PL + + F W +E + W++G TGYP +DAGMRELW TG++H+R R+ V
Sbjct: 287 HYPFTVYKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAV 346
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G K
Sbjct: 347 ASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEK 406
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FD +GEY+R+W+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R
Sbjct: 407 FDKDGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERAL 466
Query: 479 EALSEM 484
A M
Sbjct: 467 CAYKSM 472
>gi|228986230|ref|ZP_04146370.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228773492|gb|EEM21918.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 476
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 165/486 (33%), Positives = 275/486 (56%), Gaps = 28/486 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL ++G V+ ++++ + + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVLPLYVY----DETFSIGSASKWWLHHTIIDVKRQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ R +++ +L +++ G T +++N YDP L + + K L +GI +
Sbjct: 62 EALGSTLII-RKGNTMEEILSLIEQLGMTAVYWNICYDPDRLQSNQKMKMMLEDKGIICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLL----PPKRINSGD 179
FN+ LL EPW + + F AF ++ +S P + P ++ +
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYHAFQKQVISKPISKVQSIKWGSSLPASLSVSE 180
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+ P+ ES W P A K F + L+ YS+ R +
Sbjct: 181 LHLLPTIPWTSHMES----------IWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNA 230
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKA-GDESVNLFLKSIGLREYSRYMSF 298
S L+P+L FG++SV+ ++H + ++ +NE + ++ VN F++ RE+S Y+ +
Sbjct: 231 HSMLAPYLSFGQISVKLIYHYL----INKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLY 286
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
++P++ +PL + + F W +E + W++G TGYP +DAGMRELW TG++H+R R+ V
Sbjct: 287 HYPFTVYKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAV 346
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G K
Sbjct: 347 ASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEK 406
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FD +GEY+R+W+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R
Sbjct: 407 FDKDGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERAL 466
Query: 479 EALSEM 484
A M
Sbjct: 467 CAYKSM 472
>gi|229199867|ref|ZP_04326458.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293]
gi|228583609|gb|EEK41836.1| Deoxyribodipyrimidine photolyase [Bacillus cereus m1293]
Length = 476
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 166/486 (34%), Positives = 274/486 (56%), Gaps = 28/486 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL ++G V+ ++++ + + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVLPLYVY----DETFSIGSASKWWLHHTIIDVKRQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ R + + +L ++K G T +++N YDP L + + K L +GI +
Sbjct: 62 EALGSTLII-RKGNILEEILSLIKQLGITAVYWNICYDPERLQFNQKVKMMLEDKGITCK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLL----PPKRINSGD 179
FN+ LL EPW + + F AF ++ +S P + P ++ +
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPASLSVSE 180
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+ P+ ES W P A K F + L+ YS+ R +
Sbjct: 181 LHLLPTIPWTSHMES----------IWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNA 230
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKA-GDESVNLFLKSIGLREYSRYMSF 298
S L+P+L FG++SV+ ++H + ++ +NE + ++ VN F++ RE+S Y+ +
Sbjct: 231 HSMLAPYLSFGQISVKVMYHYL----INKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLY 286
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
++P++ +PL + + F W +E + W++G TGYP +DAGMRELW TG++H+R R+ V
Sbjct: 287 HYPFTVYKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAV 346
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G K
Sbjct: 347 ASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEK 406
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FD +GEY+R+W+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R
Sbjct: 407 FDKDGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERAL 466
Query: 479 EALSEM 484
A M
Sbjct: 467 CAYKSM 472
>gi|229046850|ref|ZP_04192484.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH676]
gi|229110596|ref|ZP_04240162.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-15]
gi|423586430|ref|ZP_17562517.1| hypothetical protein IIE_01842 [Bacillus cereus VD045]
gi|228672847|gb|EEL28125.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-15]
gi|228724483|gb|EEL75806.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH676]
gi|401229948|gb|EJR36456.1| hypothetical protein IIE_01842 [Bacillus cereus VD045]
Length = 476
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 170/487 (34%), Positives = 272/487 (55%), Gaps = 30/487 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ V+I +E + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYI----QEETFSIGSASKWWLHHAVIDVKKQL 61
Query: 68 RSLGTSLVTK--RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LG++L+ + R+ + + SL+E + T +++N YDP L + + K L +GI
Sbjct: 62 EALGSTLIIRKGRTEEEILSLIEQLDITA---VYWNICYDPDRLQSNQKMKMMLEDKGII 118
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLL----PPKRINS 177
+ FN+ LL EPW + + F AF ++ + PF + P ++
Sbjct: 119 CKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPFSRVQSIKWGNSLPASLSV 178
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
++ P+ + + W P A K F + L+ YS+ R
Sbjct: 179 SELQLLPTIPW----------TSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQ 228
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
S L+P+L FG++SV+ +FH + K ++ VN F++ + RE+S Y+
Sbjct: 229 NVHSMLAPYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLL 285
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
+++P++ +PL + F W +E + W++G+TGYP +DAGMRELW TG++H+R R+
Sbjct: 286 YHYPFTVYKPLNKSFEHFPWNKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMA 345
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V+SF VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G
Sbjct: 346 VASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGE 405
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
KFD NGEY+RRW+PEL +P ++I+ PW APE +LQ + I+LG YPFPIV AA+ R
Sbjct: 406 KFDKNGEYIRRWVPELKDIPNKYIYKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARERA 465
Query: 478 DEALSEM 484
A M
Sbjct: 466 LCAYKSM 472
>gi|423575239|ref|ZP_17551358.1| hypothetical protein II9_02460 [Bacillus cereus MSX-D12]
gi|401209847|gb|EJR16604.1| hypothetical protein II9_02460 [Bacillus cereus MSX-D12]
Length = 476
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 166/486 (34%), Positives = 274/486 (56%), Gaps = 28/486 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL ++G V+ ++++ + + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVLPLYVY----DETFSIGSASKWWLHHTIIDVKRQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ R + + +L ++K G T +++N YDP L + + K L +GI +
Sbjct: 62 EALGSTLII-RKGNILEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDKGITCK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLL----PPKRINSGD 179
FN+ LL EPW + + F AF ++ +S P + P ++ +
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPASLSVSE 180
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+ P+ ES W P A K F + L+ YS+ R +
Sbjct: 181 LHLLPTIPWTSHMES----------IWEPTEEGAYKTFKKFFSSKLVSYSEGRDFPNQNA 230
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKA-GDESVNLFLKSIGLREYSRYMSF 298
S L+P+L FG++SV+ ++H + ++ +NE + ++ VN F++ RE+S Y+ +
Sbjct: 231 HSMLAPYLSFGQISVKVMYHYL----INKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLY 286
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
++P++ +PL + + F W +E + W++G TGYP +DAGMRELW TG++H+R R+ V
Sbjct: 287 HYPFTVYKPLNKNFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAV 346
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G K
Sbjct: 347 ASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEK 406
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FD +GEY+R+W+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R
Sbjct: 407 FDKDGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERAL 466
Query: 479 EALSEM 484
A M
Sbjct: 467 CAYKSM 472
>gi|78047092|ref|YP_363267.1| photolyase [Xanthomonas campestris pv. vesicatoria str. 85-10]
gi|78035522|emb|CAJ23168.1| putative photolyase [Xanthomonas campestris pv. vesicatoria str.
85-10]
Length = 500
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 183/454 (40%), Positives = 267/454 (58%), Gaps = 17/454 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFRRDLR+EDNPAL A + AG I ++I AP EEG + PG SR W SL+ LD
Sbjct: 32 AIVWFRRDLRLEDNPALRAALDAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLAALDG 91
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LR+LG+ LV RS DS L EV+ TGA +++N Y+P + RD + K L +GI
Sbjct: 92 ALRALGSGLVI-RSGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRDLRERGIE 150
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS---MPFDPDAPLLPPKRINSGDMSR 182
V+S NA LL+EPW ++ QG P+ F FW L+ +P DAP P S
Sbjct: 151 VQSCNAALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAMDAPRRLPPLPASLKTDA 210
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+ LV + ++G W PG + A + L FI+G L Y +NR + D TS
Sbjct: 211 LDTLQLVPGLQWDQG----FWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRVGTSQ 266
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHLHFGE++ RI A+ + G E ++ +++ +G R+++ ++ + P
Sbjct: 267 LSPHLHFGEIAP------WRIASTLEAHRTARNGAE-IDGYIRQLGWRDFAYHLLHHFPD 319
Query: 303 SHERPLLGHLKFFSW-VVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ + L F W VD +AW++GRTG P+VDAGMR+LW TGW+H+R+R++V+SF
Sbjct: 320 TTNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASF 379
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L++ W G ++FWDTL+DADL ++ LGWQ+++GT D + R+ NP + KFDP
Sbjct: 380 LCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 439
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAA 455
+ Y+ RW+PEL +L + PW P ++ + A
Sbjct: 440 HATYITRWVPELGKLAVKERFAPWLHPLALARFA 473
>gi|312796611|ref|YP_004029533.1| Deoxyribodipyrimidine photolyase [Burkholderia rhizoxinica HKI 454]
gi|312168386|emb|CBW75389.1| Deoxyribodipyrimidine photolyase (EC 4.1.99.3) [Burkholderia
rhizoxinica HKI 454]
Length = 522
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 186/500 (37%), Positives = 261/500 (52%), Gaps = 22/500 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFR D R+ DNPAL G V+ V++ P PG RWWL SL L+++
Sbjct: 24 VVWFRDDQRLADNPALEYATATGHPVVCVYVHDPAPRNTRPPGAAGRWWLHESLRALNAA 83
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L +LG L ++S ++ A GA ++ +N Y D K AL +GIAV
Sbjct: 84 LVALGGELTVLHGSES-QAIEAFAVAIGAIKVCWNRRYSAPQRETDTAIKTALKERGIAV 142
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRIN-------SGD 179
+FN LL EPW V G+PF F+A+W + + P+AP P+RIN G
Sbjct: 143 FTFNGHLLREPWAVATRDGRPFQVFSAYW-RAARHQYSPEAPQPAPQRINFFPVPDNIGV 201
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+R + + + + L W G L F+ L Y+ R
Sbjct: 202 AARVENLSALALQPRTPDWASGLRETWQCGEQAGQTQLDAFLANALTRYASGRDVPAMQA 261
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGD--------ESVNLFLKSIGLRE 291
TS LSP+L FG +S R+V+H +S A G GD V+ FL +G RE
Sbjct: 262 TSRLSPYLRFGNLSARQVWHAA----LSAARVGRHCGDARRTCTASSGVDKFLDELGWRE 317
Query: 292 YSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLH 351
+S Y+ ++ H+ W D +AW+ GRTGYPLVDAGMRELW TGW+H
Sbjct: 318 FSYYLLYHCAPLHQVNFKRQFDTMPWRADTADLRAWQHGRTGYPLVDAGMRELWHTGWMH 377
Query: 352 DRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDN 411
+R+R+V +SF VK L + WR G +FWDTL+DAD S+ WQ+++G+ D + RI N
Sbjct: 378 NRVRMVTASFLVKHLLINWREGEAWFWDTLVDADEASNPANWQWVAGSGADAAPYFRIFN 437
Query: 412 PQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRID 471
P +G KFDP G YVRRW+PELAR+P+ +H PW A + L +A + LG +YP P+V
Sbjct: 438 PVLQGQKFDPQGAYVRRWVPELARVPSGCVHAPWLAQPAQLASASVRLGQDYPLPVVPHQ 497
Query: 472 AAKCRLDEALSEMWQQEAAS 491
A+ R +A+ M +E+ S
Sbjct: 498 QARERALKAMEHMRGRESGS 517
>gi|423528953|ref|ZP_17505398.1| hypothetical protein IGE_02505 [Bacillus cereus HuB1-1]
gi|402449821|gb|EJV81656.1| hypothetical protein IGE_02505 [Bacillus cereus HuB1-1]
Length = 476
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 170/482 (35%), Positives = 270/482 (56%), Gaps = 20/482 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ V+I ++ + G ++WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYI----QDETFSIGSAAKWWLHHAVKDVKKQL 61
Query: 68 RSLGTSLVTK--RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LG++L+ + R+ + + SL+E + T +++N YDP + + + K L +GI
Sbjct: 62 EALGSTLIIRKGRTEEEILSLIEQLDITA---VYWNICYDPDRVQSNQKMKMMLEDKGII 118
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM-SRCP 184
+ FN+ LL EPW + + F F+ F P +++ S S P
Sbjct: 119 CKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-----AFQKQVIPKPIRKVQSIKWGSSLP 173
Query: 185 SDTLVFEDESEKGS--NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+ V E + + W+P A K F + L+ YS+ R D S
Sbjct: 174 ASLSVSELHLLPTIPWTSHMEAIWNPTEEGAYKTFKKFFSSKLVSYSEGRDFPDQNVHSM 233
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
L+P+L FG++SV+ +FH + K ++ VN F++ + RE+S Y+ +++P+
Sbjct: 234 LAPYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPF 290
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ +PL + F W +E W++G TGYP +DAGMRELW TG++H+R R+ V+SF
Sbjct: 291 TVSKPLNKSFENFPWDKEEELLSVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFL 350
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD N
Sbjct: 351 VKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKN 410
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
GEY+RRW+PEL+ +P ++IH PW AP +LQ A I+LG YP+PIV AA+ R A
Sbjct: 411 GEYIRRWVPELSDIPNKYIHKPWEAPAHILQKANIKLGDTYPYPIVDHKAARERALCAYK 470
Query: 483 EM 484
M
Sbjct: 471 SM 472
>gi|292490401|ref|YP_003525840.1| deoxyribodipyrimidine photo-lyase [Nitrosococcus halophilus Nc4]
gi|291578996|gb|ADE13453.1| Deoxyribodipyrimidine photo-lyase [Nitrosococcus halophilus Nc4]
Length = 477
Score = 320 bits (819), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 182/465 (39%), Positives = 267/465 (57%), Gaps = 33/465 (7%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
++VWFRRDLR+ DNPALAA G VI V+I APEEEG + PG SRWW HSL+ LD
Sbjct: 5 TALVWFRRDLRLGDNPALAAACALGGQVIPVYIDAPEEEGAWPPGAASRWWQHHSLAALD 64
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
S L+ + L+ R S +L ++ + T AT +F+N Y+P + RD K+ L A G+
Sbjct: 65 SGLKKRNSRLIV-RQGPSHKALGQLAEETSATHIFWNRRYEPAVIKRDQAIKQQLRAAGL 123
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCL------SMPFDPDAPLLPPKRINS- 177
V+S NA LL+EPW++ G P+ F FW+ CL S P +++ S
Sbjct: 124 TVKSTNALLLFEPWEIAKNDGMPYRIFTPFWKTCLEKGIGRSPFPPPQHLPPVNRQLQSE 183
Query: 178 -----GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNR 232
G + + P D + W+PG + A + F+ L +Y + R
Sbjct: 184 PLSTLGLLPKIPWDQEFYTH-------------WTPGEAGAWRQWECFLEEALGKYHQER 230
Query: 233 RKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREY 292
+ D TS LSPHLHFGE+S R++ ++I+ A AG ++ +L+ +G RE+
Sbjct: 231 DRPDLPGTSRLSPHLHFGEISPRQIAFQIQIQMDRRAE--LTAGGQA---YLRQLGWREF 285
Query: 293 SRYMSFNHPYSHERPLLGHLKFFSWVVDEG-YFKAWRQGRTGYPLVDAGMRELWATGWLH 351
+ ++ ++ P + E+PL F W D G AW+QGRTG PLVDAGMRELW TGW+H
Sbjct: 286 AYHLLYHFPETPEKPLNEGFTHFPWAEDYGEALTAWQQGRTGIPLVDAGMRELWRTGWMH 345
Query: 352 DRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDN 411
+R+R++ +S K L++PW+ G ++FW+TL+DADL S+ LGWQ+++G D + R+ N
Sbjct: 346 NRVRMIAASLLTKNLRIPWQEGERWFWETLVDADLASNTLGWQWVAGCGADAAPYFRVFN 405
Query: 412 PQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAG 456
P +G KFDP G+YV++W+PEL ++ + IH PW L G
Sbjct: 406 PVLQGKKFDPEGKYVQQWIPELRKISKQHIHEPWKEARQPLSTPG 450
>gi|217976568|ref|YP_002360715.1| deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2]
gi|217501944|gb|ACK49353.1| Deoxyribodipyrimidine photo-lyase [Methylocella silvestris BL2]
Length = 486
Score = 319 bits (818), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 182/485 (37%), Positives = 261/485 (53%), Gaps = 17/485 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFR DLR+ DN ALAA + G ++ V+I G G +RWWL HSL L
Sbjct: 10 AIVWFRDDLRLADNEALAAALSTGGPLLCVYILEDGTAGFRPLGGAARWWLHHSLQALGQ 69
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+ + G L ++ L + +A GA + + Y + D K G+
Sbjct: 70 DIAAKGGRL-DLFCGEARRILPALAEAAGARIICWTRRYGGPEMAVDAALKAQFKTSGVE 128
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKR-----INSGDM 180
+SFN LL+EPWD+ G FA + +W + S PL P R I G +
Sbjct: 129 AKSFNGHLLHEPWDITRGDGHGFAVYTPYW-RAASAAAQVGEPLPAPDRLPAAPIPRGAL 187
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
+ L E + L A AW PG + A + L F+ G + YS R + +
Sbjct: 188 RTTSIEALALLPEKPDWAGGLRA-AWRPGENGAQERLKAFLEGEIASYSLERNRPSADAV 246
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSPHL FGE+ R++F VR +W N K G + FL +G RE++ ++SF H
Sbjct: 247 SRLSPHLRFGEIGPRQIFAAVR---TAWDNAAQKGGVK----FLAELGWREFNYHLSFYH 299
Query: 301 PYSHERPLLGHLKFFSWVVDEGY-FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P + + + W AW++G TGYPL+DAGMRELWATG++H+R+R+VV+
Sbjct: 300 PDAARQNIQRRFDKMPWREPAPRELSAWQRGETGYPLIDAGMRELWATGYMHNRVRMVVA 359
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF +K L + WR G +FWDTL DAD ++ + WQ+++G+ D + RI NP +G KF
Sbjct: 360 SFLIKHLLIDWRIGENWFWDTLCDADPANNPMNWQWVAGSGADAAPYFRIFNPVLQGEKF 419
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
D G+YVRRW+PELA+LP +WIH P+ AP ++L+ AG+ELG NYP PIV + + R
Sbjct: 420 DAAGDYVRRWIPELAKLPNKWIHKPFAAPPALLRGAGVELGKNYPRPIVDLAEGRARALA 479
Query: 480 ALSEM 484
A ++
Sbjct: 480 AFEKV 484
>gi|365887145|ref|ZP_09426019.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3809]
gi|365337300|emb|CCD98550.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3809]
Length = 481
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 179/464 (38%), Positives = 262/464 (56%), Gaps = 10/464 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFR LR+ D+PAL A ++G V+ +I+ E G + G +RWWL SL L +
Sbjct: 6 TIVWFRESLRLSDHPALYAAAKSGGPVVCSYIYDQESSGLRHLGAATRWWLAQSLRALQA 65
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L++LG L+ +R + L+E+ + T A+ +++N + + L G+A
Sbjct: 66 DLKTLGADLIIRRGR-AAQVLVELARETRASAVYWNDVAQAGPRRVASSVEAGLGEIGVA 124
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS-GDMSRCP 184
R F DLL +P ++ G+ F FW++ L++ DP PL P R+ + ++
Sbjct: 125 SRVFPDDLLVDPATMSGKDGRGPRVFTPFWKRVLAL-GDPPKPLPTPGRLAAVPNVVSLT 183
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
D L+ E + L A W G A + L +F+ + Y+ +R + D TS LS
Sbjct: 184 VDELMLEPTRPDWAGGLRA-TWQAGERAAQQRLGSFLESAVGSYAGDRDRPDIDATSRLS 242
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
PHL FGE+S R++++ R A E A + ++ FL IG RE+SR++ +N+P
Sbjct: 243 PHLRFGEISPRQIWYAARF-----AAEERPALAKGIDKFLSEIGWREFSRHLLYNNPDLA 297
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
R L F W D+ AW++GRTGYP+VDAGMRELW TG +H+R+R+V +S VK
Sbjct: 298 TRNLQPSFDAFPWTQDDAALAAWQRGRTGYPIVDAGMRELWHTGSMHNRVRMVAASLLVK 357
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L L WR G ++FWDTL+DAD S+ WQ+++G+ D + R+ NP +G KFD NG
Sbjct: 358 HLLLDWRQGEQWFWDTLVDADAGSNPASWQWVAGSGADAAPYFRVFNPVLQGEKFDANGS 417
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
YVRRW+PELARLP IH PW A L AG+ LG +YP PIV
Sbjct: 418 YVRRWVPELARLPAGLIHQPWAAKPLELAEAGVTLGRSYPAPIV 461
>gi|325928738|ref|ZP_08189908.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas perforans
91-118]
gi|325540906|gb|EGD12478.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas perforans
91-118]
Length = 472
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 180/454 (39%), Positives = 267/454 (58%), Gaps = 17/454 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFRRDLR+EDNPAL A + AG I ++I AP EEG + PG SR W SL+ LD
Sbjct: 4 AIVWFRRDLRLEDNPALRAALDAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLAALDG 63
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LR+LG+ LV RS +S L EV+ TGA +++N Y+P + RD + K L +GI
Sbjct: 64 ALRALGSGLVI-RSGNSAQVLDEVIAQTGAAAVYWNRKYEPATQPRDAQIKRDLRERGIE 122
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS---MPFDPDAPLLPPKRINSGDMSR 182
V+S NA LL+EPW ++ QG P+ F FW L+ +P DAP P S
Sbjct: 123 VQSCNAALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAMDAPRRLPPLPASLKTDA 182
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+ LV + ++G W PG + A + L FI+G L Y +NR + D TS
Sbjct: 183 LDTLQLVPGLQWDQG----FWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRVGTSQ 238
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHLHFGE++ ++ + + + + G E ++ +++ +G R+++ ++ + P
Sbjct: 239 LSPHLHFGEIAPWRIASTLETHRTA------RNGAE-IDAYIRQLGWRDFAYHLLHHFPD 291
Query: 303 SHERPLLGHLKFFSW-VVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ + L F W VD +AW++GRTG P+VDAGMR+LW TGW+H+R+R++V+SF
Sbjct: 292 TTNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASF 351
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L++ W G ++FWDTL+DADL ++ LGWQ+++GT D + R+ NP + KFDP
Sbjct: 352 LCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 411
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAA 455
Y+ RW+PEL +L + PW P S+ + A
Sbjct: 412 QAAYITRWVPELGKLAVKERFAPWLHPLSLARFA 445
>gi|30021247|ref|NP_832878.1| deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 14579]
gi|229130975|ref|ZP_04259903.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-Cer4]
gi|29896801|gb|AAP10079.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 14579]
gi|228652473|gb|EEL08383.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-Cer4]
Length = 476
Score = 319 bits (817), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 172/482 (35%), Positives = 270/482 (56%), Gaps = 20/482 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ V+I ++ + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYI----QDETFSIGSASKWWLHHAVIDVKKQL 61
Query: 68 RSLGTSLVTK--RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LG++L+ + R+ + + SL+E + T +++N YDP L + + K L +GI
Sbjct: 62 EALGSTLIIRKGRTEEEILSLIEQLDITA---VYWNICYDPDRLQSNQKMKMMLEDKGII 118
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM-SRCP 184
+ FN+ LL EPW + + F F+ F P R+ S + P
Sbjct: 119 CKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-----AFQKQVIPKPFSRVQSIKWGNSLP 173
Query: 185 SDTLVFEDESEKGS--NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+ V E + + + W P A K F + L+ YS+ R S
Sbjct: 174 ASLSVSELQLLPIIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQNVHSM 233
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
L+P+L FG++SV+ +FH + K ++ VN F++ + RE+S Y+ +++P+
Sbjct: 234 LAPYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPF 290
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ +PL + F W +E + W++G+TGYP +DAGMRELW TG++H+R R+ V+SF
Sbjct: 291 TVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFL 350
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD N
Sbjct: 351 VKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKN 410
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
GEY+RRW+PEL +P ++IH PW APE +LQ + I+LG YPFPIV AA+ R A
Sbjct: 411 GEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARERALCAYK 470
Query: 483 EM 484
M
Sbjct: 471 SM 472
>gi|407776584|ref|ZP_11123857.1| DNA photolyase [Nitratireductor pacificus pht-3B]
gi|407301875|gb|EKF20994.1| DNA photolyase [Nitratireductor pacificus pht-3B]
Length = 487
Score = 319 bits (817), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 183/464 (39%), Positives = 252/464 (54%), Gaps = 14/464 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
++ FR DLR+ DN ALAA R+G + AVFI EG PG RWWL HSL L
Sbjct: 15 LILFRHDLRLTDNRALAAAARSGRPLAAVFILDETSEGTRPPGGARRWWLHHSLKALGED 74
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L LG L+ +R + + + A +++N YDP + D R K +L GI
Sbjct: 75 LGRLGIRLILQRGP-MADTAMRLAARLNAGAVYWNRRYDPPGIAADTRMKASLRDAGIEA 133
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGD--MSRCP 184
SF LL+EPW + G P+ F FW + L +P AP P R+N+ D ++ P
Sbjct: 134 ESFEGHLLHEPWRLKTGAGGPYRVFTPFW-RALQQSIEPHAPADRPHRLNAADHDVASDP 192
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
D S L A+ W+PG + A + L F+ G Y + R A TS LS
Sbjct: 193 LDQWELLPSKPDWSGGLAAQ-WTPGEAGARERLDAFLAGGGTGYDRRRDVLADAGTSSLS 251
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
PHL GE+S +++ + A AGD F K +G RE+ ++ F++P
Sbjct: 252 PHLAHGEISPWQIWSALE------AGHELPAGD--AQTFRKELGWREFCWHLLFHNPDLA 303
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
R F W D+ +AW++G+TGYP+VDA MR+LW TGW+H+R R++V+SF VK
Sbjct: 304 TRNFNRDFDAFPWQRDDKALRAWQRGQTGYPVVDAAMRQLWQTGWMHNRARMIVASFLVK 363
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L+L WR G ++FWDTL+DAD S+ WQ+++G+ D F RI NP +G KFDP+G
Sbjct: 364 DLRLDWRSGEEWFWDTLVDADPASNPANWQWVAGSGADAAPFFRIFNPVLQGEKFDPDGA 423
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
YV R++PEL LP +IH PWNA + L AGI LG YP P+V
Sbjct: 424 YVHRFVPELRNLPKRYIHKPWNATAAALSEAGIRLGETYPAPMV 467
>gi|423641840|ref|ZP_17617458.1| hypothetical protein IK9_01785 [Bacillus cereus VD166]
gi|401277790|gb|EJR83729.1| hypothetical protein IK9_01785 [Bacillus cereus VD166]
Length = 476
Score = 319 bits (817), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 170/487 (34%), Positives = 272/487 (55%), Gaps = 30/487 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ V+I ++ + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYI----QDETFSIGSASKWWLHHAVIDVKKQL 61
Query: 68 RSLGTSLVTK--RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LG++L+ + R+ + + SL+E + T +++N YDP L + + K L +GI
Sbjct: 62 EALGSTLIIRKGRTEEEILSLIEQLDITA---VYWNICYDPDRLQSNQKMKMMLEDKGII 118
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLL----PPKRINS 177
+ FN+ LL EPW + + F AF ++ + PF + P ++
Sbjct: 119 CKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPFSRVQSIKWGNSLPASLSV 178
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
++ P+ + + W P A K F + L+ YS+ R
Sbjct: 179 SELQLLPTIPW----------TSHMEVIWDPTEEGAYKTFKKFFSRKLVSYSEGRDFPGQ 228
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
S L+P+L FG++SV+ +FH + K ++ VN F++ + RE+S Y+
Sbjct: 229 NVHSMLAPYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLL 285
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
+++P++ +PL + F W +E + W++G+TGYP +DAGMRELW TG++H+R R+
Sbjct: 286 YHYPFTVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMA 345
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V+SF VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G
Sbjct: 346 VASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGE 405
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
KFD NGEY+RRW+PEL +P ++IH PW APE +LQ + I+LG YPFPIV AA+ R
Sbjct: 406 KFDKNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARERA 465
Query: 478 DEALSEM 484
A M
Sbjct: 466 LCAYKSM 472
>gi|229145749|ref|ZP_04274130.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST24]
gi|296503680|ref|YP_003665380.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis BMB171]
gi|228637730|gb|EEK94179.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BDRD-ST24]
gi|296324732|gb|ADH07660.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis BMB171]
Length = 476
Score = 318 bits (816), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 172/482 (35%), Positives = 270/482 (56%), Gaps = 20/482 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ V+I ++ + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYI----QDETFSIGSASKWWLHHAVIDVKKQL 61
Query: 68 RSLGTSLVTK--RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LG++L+ + R+ + + SL+E + T +++N YDP L + + K L +GI
Sbjct: 62 EALGSTLIIRKGRTEEEILSLIEQLDITA---VYWNICYDPDRLQSNQKMKMMLEDKGII 118
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM-SRCP 184
+ FN+ LL EPW + + F F+ F P R+ S + P
Sbjct: 119 CKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-----AFQKQVIPKPFSRVQSIKWGNSLP 173
Query: 185 SDTLVFEDESEKGS--NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+ V E + + + W P A K F + L+ YS+ R S
Sbjct: 174 ASLSVSELQLLPIIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQNVHSM 233
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
L+P+L FG++SV+ +FH + K ++ VN F++ + RE+S Y+ +++P+
Sbjct: 234 LAPYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPF 290
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ +PL + F W +E + W++G+TGYP +DAGMRELW TG++H+R R+ V+SF
Sbjct: 291 TVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFL 350
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD N
Sbjct: 351 VKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKN 410
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
GEY+RRW+PEL +P ++IH PW APE +LQ + I+LG YPFPIV AA+ R A
Sbjct: 411 GEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARERALCAYK 470
Query: 483 EM 484
M
Sbjct: 471 SM 472
>gi|218231250|ref|YP_002367872.1| deoxyribodipyrimidine photolyase [Bacillus cereus B4264]
gi|218159207|gb|ACK59199.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus B4264]
Length = 476
Score = 318 bits (816), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 167/480 (34%), Positives = 268/480 (55%), Gaps = 16/480 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ V++ ++ + G ++WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDETFSIGSAAKWWLHHAIIDVQKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
++LG++L+ R ++ +L ++K T +++N YDP L + + K L +GI +
Sbjct: 62 KALGSTLII-RKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDKGIICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM-SRCPSD 186
FN+ LL EPW + + F F+ F P R+ S S P+
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYN-----AFQKQVIPKPISRVQSIKWGSSLPAS 175
Query: 187 TLVFEDESEKGS--NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
V E + + W P A K F + L YS+ R + S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
P+L FG++SV+ ++H + K ++ V F++ + RE+S Y+ +++P++
Sbjct: 236 PYLSFGQISVKLMYHYLINKSTE---RQCSFFEKQVISFIRQLIWREFSYYLLYHYPFTA 292
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
+PL + + F W +E + W++G TGYP +DAGMRELW TG++H+R R+ V+SF VK
Sbjct: 293 YKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD NGE
Sbjct: 353 HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGE 412
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
Y+RRW+PEL +P ++IH PW APE +LQ + I+LG+ YP+PIV AA+ R A M
Sbjct: 413 YIRRWIPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKNM 472
>gi|75763261|ref|ZP_00743014.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74489251|gb|EAO52714.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 478
Score = 318 bits (816), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 166/492 (33%), Positives = 272/492 (55%), Gaps = 26/492 (5%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
M+ + IV F++D R+ DNPAL V++G V+ V+I ++ + G ++WWL H++
Sbjct: 1 MTMQKKIIVMFQKDFRLYDNPALFEAVQSGEVLPVYI----QDETFSIGSAAKWWLHHAI 56
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+ L++LG++ + R+ + +L +++ T +++N YDP L + + K L
Sbjct: 57 IDVQKQLKALGSTFII-RNGKTQEEILSLIEQLDITAVYWNICYDPDRLQSNQKMKMMLE 115
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLL----PP 172
+GI + FN+ LL EPW + + F AF ++ + P + P
Sbjct: 116 DKGIICKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQSIKWGSSLP 175
Query: 173 KRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNR 232
++ ++ P+ ES W P A K F + L YS+ R
Sbjct: 176 ASLSVSELHLLPTIPWTSHIES----------IWEPTEEGAYKTFKKFFSSKLASYSEGR 225
Query: 233 RKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREY 292
+ S L+P+L FG++SV+ ++H + K ++ VN F++ + RE+
Sbjct: 226 DFPNQNAHSMLAPYLSFGQISVKLMYHYLINKS---TERQCSLFEKQVNSFIRQLIWREF 282
Query: 293 SRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHD 352
S Y+ +++P++ +PL + + F W +E + W++G TGYP +DAGMRELW TG++H+
Sbjct: 283 SYYLLYHYPFTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHN 342
Query: 353 RIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNP 412
R R+ V+SF VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP
Sbjct: 343 RTRMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNP 402
Query: 413 QFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDA 472
+G KFD NGEY+R+W+PEL +P ++IH PW APE +LQ A IELG+ YP P+V A
Sbjct: 403 ITQGEKFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIELGNTYPLPVVDHKA 462
Query: 473 AKCRLDEALSEM 484
A+ R A M
Sbjct: 463 ARERALCAYKSM 474
>gi|423649036|ref|ZP_17624606.1| hypothetical protein IKA_02823 [Bacillus cereus VD169]
gi|401284534|gb|EJR90400.1| hypothetical protein IKA_02823 [Bacillus cereus VD169]
Length = 476
Score = 318 bits (816), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 171/482 (35%), Positives = 270/482 (56%), Gaps = 20/482 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
I+ F++D R+ DNPAL V++G V+ V+I ++ + G S+WWL H++ + L
Sbjct: 6 IIMFQKDFRLYDNPALFEAVQSGEVLPVYI----QDETFSIGSASKWWLHHAVIDVKKQL 61
Query: 68 RSLGTSLVTK--RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LG++L+ + R+ + + SL+E + T +++N YDP L + + K L +GI
Sbjct: 62 EALGSTLIIRKGRTEEEILSLIEQLDITA---VYWNICYDPDRLQSNQKMKMMLEDKGII 118
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM-SRCP 184
+ FN+ LL EPW + + F F+ F P R+ S + P
Sbjct: 119 CKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-----AFQKQVIPKPFSRVQSIKWGNSLP 173
Query: 185 SDTLVFEDESEKGS--NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+ V E + + + W P A K F + L+ YS+ R S
Sbjct: 174 ASLSVSELQLLPIIPWTSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQNVHSM 233
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
L+P+L FG++SV+ +FH + K ++ VN F++ + RE+S Y+ +++P+
Sbjct: 234 LAPYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPF 290
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ +PL + F W +E + W++G+TGYP +DAGMRELW TG++H+R R+ V+SF
Sbjct: 291 TVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFL 350
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD N
Sbjct: 351 VKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKN 410
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
GEY+RRW+PEL +P ++IH PW APE +LQ + I+LG YPFPIV AA+ R A
Sbjct: 411 GEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPFPIVDHKAARERALCAYK 470
Query: 483 EM 484
M
Sbjct: 471 SM 472
>gi|195997383|ref|XP_002108560.1| hypothetical protein TRIADDRAFT_51590 [Trichoplax adhaerens]
gi|190589336|gb|EDV29358.1| hypothetical protein TRIADDRAFT_51590 [Trichoplax adhaerens]
Length = 497
Score = 318 bits (816), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 177/482 (36%), Positives = 264/482 (54%), Gaps = 13/482 (2%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
C++VW R DLR+ DNPAL + G V+ ++I E G + G+ S WWL HSL L +
Sbjct: 3 CTVVWLRYDLRLIDNPALFHAAKRGHVVIIYILDQETPGKWKLGKASLWWLHHSLKSLQN 62
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L L+ +R D ++ L +V+ + A +++N Y+P ++ RD +EAL +
Sbjct: 63 DLLKFNIPLILRRGADPLTILRQVLLQSRADAVYWNRCYEPYAVKRDQSIEEALKVDDVT 122
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
V SF A LLYEPW V A+ +PF + +W +CLS P P P+ N+ D+ + +
Sbjct: 123 VGSFQAGLLYEPWAVKSAKDEPFKLYIMYWNRCLSSD-QPRKPYDKPRFNNTLDI-KVQT 180
Query: 186 DTL---VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
DTL + + L PG A + L FI L++Y K + + TS
Sbjct: 181 DTLDSWHLVSAKKDWKDELKIVIGCPGEDGAIRKLKEFIKYKLVDYRKGKETVWPSKTSQ 240
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LS HLHFGE+S V+H + + +S FL +G R++ ++ +P
Sbjct: 241 LSTHLHFGEISPFVVWHTAKE-----SVHLRSVPSDSSQKFLTELGWRDFCFHLLHYYPD 295
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
E+ + W VD+ K W+QG+TGYP+VDAGMREL TG + R+R +V+SF
Sbjct: 296 FPEKSYKLNFDETIWKVDKEKLKLWQQGKTGYPIVDAGMRELLNTGVISYRVRTIVASFL 355
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
K L +PW+ G ++FWDTL+DADL ++ WQ I+G D ++ I NP +G +FD +
Sbjct: 356 TKHLLIPWQNGAEWFWDTLVDADLALNSCSWQRITGCGADISSYFYIINPVTQGERFDSD 415
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
G YVR+W+PE+A+L ++I PW AP +VL+ AGI LG YP IV A+ D AL+
Sbjct: 416 GNYVRKWIPEIAKLSNDYIQQPWEAPAAVLKKAGIALGKTYPKCIVNHKKAR---DVALT 472
Query: 483 EM 484
+
Sbjct: 473 KF 474
>gi|29654479|ref|NP_820171.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493]
gi|212212435|ref|YP_002303371.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212]
gi|29541746|gb|AAO90685.1| deoxyribodipyrimidine photolyase [Coxiella burnetii RSA 493]
gi|212010845|gb|ACJ18226.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuG_Q212]
Length = 472
Score = 318 bits (815), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 174/471 (36%), Positives = 277/471 (58%), Gaps = 16/471 (3%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
+I WFR+DLR+ DNPAL + A +I ++I ++ G RWWL HSLS L
Sbjct: 2 TTIFWFRQDLRLSDNPALVEAAKSADHLIPLYI---LDDQLKMLGDAQRWWLHHSLSSLQ 58
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
++L GTSL+ K+ D+ LLE++K ++++N Y+P D + L +
Sbjct: 59 TALSKKGTSLILKKG-DTKRVLLELIKKYKVEKIYWNRSYEPPYREIDTYLENRLPP--L 115
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
+V +++ LL EP + + G + F FW K ++ P L PK+ + +
Sbjct: 116 SVEIYHSTLLTEPQKIKNKSGGYYKIFTPFW-KHINASLQPRKTLAAPKKFSQHRAIK-- 172
Query: 185 SDTLVFEDESEKGSN-ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
SD L + K + + W PG NA L FI L Y +R + D ++TS L
Sbjct: 173 SDNLETWNLLPKHPDWSQGFDQWKPGEKNAQIVLKKFIKENLKNYPAHRDRPDISSTSHL 232
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SP+LHFGE+S+R+V+ ++ A +K ++ ++FL+ + RE++ Y+ ++ P
Sbjct: 233 SPYLHFGEISIRQVW-----TAITQATIQDKNLQKAADVFLRQLIWREFAYYLLWHFPQM 287
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
F W ++ + +AW++G TGYP+VDAGMRELW TG++H+R+R++V+SF V
Sbjct: 288 GRSNFRNQFDNFKWKKNKNWLRAWQKGLTGYPIVDAGMRELWCTGYMHNRVRMIVASFLV 347
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WR G K+FW+TLLDADL ++ALGWQ+I+G PD + RI NP + KFDP+G
Sbjct: 348 KDLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGPDAAPYFRIFNPILQSKKFDPDG 407
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
Y++RW+PELA++P+++IH+P + P+++ +++ + LG +YPFPIV AK
Sbjct: 408 TYIKRWIPELAKVPSKYIHYPADMPDNISESSKVNLGVDYPFPIVNHHKAK 458
>gi|375285088|ref|YP_005105527.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
NC7401]
gi|358353615|dbj|BAL18787.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
NC7401]
Length = 469
Score = 318 bits (815), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 162/483 (33%), Positives = 274/483 (56%), Gaps = 28/483 (5%)
Query: 11 FRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSL 70
F++D R+ DNPAL ++G V+ ++++ + + G S+WWL H++ + L +L
Sbjct: 2 FQKDFRLYDNPALFEAAQSGEVLPLYVY----DETFSIGSASKWWLHHTIIDVKRQLEAL 57
Query: 71 GTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFN 130
G++L+ R +++ +L +++ G T +++N YDP L + + K L +GI + FN
Sbjct: 58 GSTLII-RKGNTMEEILSLIEQLGITAVYWNICYDPDRLQSNQKMKMMLEDKGITCKEFN 116
Query: 131 ADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLL----PPKRINSGDMSR 182
+ LL EPW + + F AF ++ +S P + P ++ ++
Sbjct: 117 SHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPASLSVSELHL 176
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
P+ ES W P A K F + L+ YS+ R + S
Sbjct: 177 LPTIPWTSHMES----------IWEPTEEGAYKTCKKFFSSKLVSYSEGRDFPNQNAHSM 226
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKA-GDESVNLFLKSIGLREYSRYMSFNHP 301
L+P+L FG++SV+ ++H + ++ +NE + ++ VN F++ RE+S Y+ +++P
Sbjct: 227 LAPYLSFGQISVKLMYHYL----INKSNEKQCSLFEQQVNSFIRQFIWREFSYYLLYHYP 282
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
++ +PL ++F W ++ + W++G+TGYP +DAGMRELW TG++H+R R+ V+SF
Sbjct: 283 FTVYKPLNKSFEYFPWNNEKKLLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASF 342
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD
Sbjct: 343 LVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDK 402
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
+GEY+R+W+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R A
Sbjct: 403 DGEYIRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAY 462
Query: 482 SEM 484
M
Sbjct: 463 KSM 465
>gi|365160129|ref|ZP_09356302.1| hypothetical protein HMPREF1014_01765 [Bacillus sp. 7_6_55CFAA_CT2]
gi|363624172|gb|EHL75256.1| hypothetical protein HMPREF1014_01765 [Bacillus sp. 7_6_55CFAA_CT2]
Length = 476
Score = 318 bits (815), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 168/480 (35%), Positives = 267/480 (55%), Gaps = 16/480 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ V++ ++ + G ++WWL+H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDETFSIGSAAKWWLRHAIMDVQKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
++LG++L+ R ++ +L ++K T +++N YDP L + + K L +GI +
Sbjct: 62 KALGSTLII-RKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDKGIICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM-SRCPSD 186
FN+ LL EPW + + F F+ F P R+ S S P+
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYN-----AFQKQVIPKPISRVQSIKWGSSLPAS 175
Query: 187 TLVFEDESEKGS--NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
V E + + W P A K F + L YS+ R + S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
P+L FG++SV+ ++H + K ++ V F++ + RE+S Y+ +++P++
Sbjct: 236 PYLSFGQISVKLMYHYLINKS---TERQCSFFEKQVISFIRQLIWREFSYYLLYHYPFTV 292
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
RPL + F W +E + W++G+TGYP +DAGMRELW TG++H+R R+ V+SF VK
Sbjct: 293 YRPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD NGE
Sbjct: 353 HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGE 412
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
Y+RRW+PEL +P ++IH PW AP +LQ A I+LG YP+PIV AA+ R A M
Sbjct: 413 YIRRWVPELRDIPNKYIHKPWEAPAHILQKANIKLGDTYPYPIVDHKAARERALCAYKSM 472
>gi|423384690|ref|ZP_17361946.1| hypothetical protein ICE_02436 [Bacillus cereus BAG1X1-2]
gi|401639360|gb|EJS57099.1| hypothetical protein ICE_02436 [Bacillus cereus BAG1X1-2]
Length = 476
Score = 318 bits (814), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 169/482 (35%), Positives = 266/482 (55%), Gaps = 20/482 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ V+I ++ + G ++WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYI----QDETFSIGSAAKWWLHHAVKDVKKQL 61
Query: 68 RSLGTSLVTK--RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LG++L+ + R+ + + SL+E + T +++N YDP L + + K L +GI
Sbjct: 62 EALGSTLIIRKGRTEEEILSLIEQLDITA---VYWNICYDPDRLQSNQKMKMMLEDKGII 118
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
+ FN+ LL EPW + + F F+ F P R+ S
Sbjct: 119 CKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-----AFQKQVIPKPISRVQSIKWGNSLP 173
Query: 186 DTLVFEDESEKGS---NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+L + + + + W P A K F + L YS+ R D S
Sbjct: 174 ASLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLASYSEGRDFPDQNVHSM 233
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
L+P+L FG++SV+ +FH + K ++ VN F++ + RE+S Y+ +++P+
Sbjct: 234 LAPYLSFGQISVKLMFHYLVNKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPF 290
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ +PL + F W +E W++G TGYP +DAGMRELW TG++H+R R+ V+SF
Sbjct: 291 TVSKPLNKSFENFPWDKEEELLSVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFL 350
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD N
Sbjct: 351 VKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKN 410
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
GEY+RRW+PEL+ +P ++IH PW AP +LQ A I+LG YP+PIV AA+ R A
Sbjct: 411 GEYIRRWVPELSDIPNKYIHKPWEAPVHILQKANIKLGDTYPYPIVDHKAARERALCAYK 470
Query: 483 EM 484
M
Sbjct: 471 SM 472
>gi|338738139|ref|YP_004675101.1| DNA photolyase FAD-binding protein [Hyphomicrobium sp. MC1]
gi|337758702|emb|CCB64527.1| DNA photolyase FAD-binding protein [Hyphomicrobium sp. MC1]
Length = 487
Score = 318 bits (814), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 179/473 (37%), Positives = 252/473 (53%), Gaps = 9/473 (1%)
Query: 6 CSIVWFRRDLRVEDNPALAAGV-RAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
+IVWFR DLR+ D+PAL A V R G VIA+F+ G + G SRWWL SL L
Sbjct: 8 ATIVWFRNDLRLCDHPALTAAVKRGGPVIALFVLDDAAAGCWKLGGASRWWLAKSLEALS 67
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ G L+ +R D+ S L +V +GAT ++ Y+P + + + ++ G+
Sbjct: 68 HDIAQRGARLILRRG-DTESILKRLVDESGATAVYVTRGYEPWAKGLEEKLHKSFGGSGV 126
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
+ F LL EP D+ + G + F FW + F L P+ + +
Sbjct: 127 VFKRFGGRLLREPEDLRTSSGAAYQVFTPFW-RVFRKEFSAPKALAAPRHLGPVPDAIAS 185
Query: 185 SDTLVFEDESEKGS-NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
D ++ K + LA AW PG A L F++ L Y R + ++ TS L
Sbjct: 186 DDISDWKLAPTKPDWSGGLAEAWRPGERGAQLRLKNFVSEGLSNYDDGRDRLNAEGTSRL 245
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SPHL FGE+S + + + D +V FLK + RE+S + F P
Sbjct: 246 SPHLAFGEISPAACWRAAAEA-----SHQTHSSDGAVETFLKELAWREFSYALLFQFPQM 300
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
+ PL F W KAW++G TGYP+VDAGMRELWATG++H+R R++ +SF
Sbjct: 301 PDEPLRDEFAAFPWAKSSANLKAWQRGLTGYPVVDAGMRELWATGYMHNRARMIAASFLT 360
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L LPW G +FWDTL+DADL ++A WQ+++G D + RI NP +G KFDP+G
Sbjct: 361 KHLLLPWTSGEAWFWDTLVDADLANNAANWQWVAGCGADAAPYFRIFNPVLQGEKFDPDG 420
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
+YVRRW+PEL RLP+ IH PW A + L+ AG+ +G NYPFPIV A+ R
Sbjct: 421 DYVRRWVPELQRLPSADIHKPWAADATTLKRAGVAIGKNYPFPIVDHKEARAR 473
>gi|229179435|ref|ZP_04306788.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W]
gi|228603936|gb|EEK61404.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 172560W]
Length = 476
Score = 318 bits (814), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 167/480 (34%), Positives = 268/480 (55%), Gaps = 16/480 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ V++ ++ + G ++WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDETFSIGSAAKWWLHHAIIDVQKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
++LG++L+ R ++ +L ++K T +++N YDP L + + K L +GI +
Sbjct: 62 KALGSTLII-RKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDKGIICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM-SRCPSD 186
FN+ LL EPW + + F F+ F P R+ S S P+
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYN-----AFQKQVIPKPISRVQSIKWGSSLPAS 175
Query: 187 TLVFEDESEKGS--NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
V E + + W P A K F + L YS+ R + S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
P+L FG++SV+ ++H + K ++ V F++ + RE+S Y+ +++P++
Sbjct: 236 PYLSFGQISVKLMYHYLINKS---TERQCSFFEKQVISFIRQLIWREFSYYLLYHYPFTV 292
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
+PL + + F W +E + W++G TGYP +DAGMRELW TG++H+R R+ V+SF VK
Sbjct: 293 YKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD NGE
Sbjct: 353 HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGE 412
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
Y+RRW+PEL +P ++IH PW APE +LQ + I+LG+ YP+PIV AA+ R A M
Sbjct: 413 YIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGNTYPYPIVDHKAARERALCAYKSM 472
>gi|410634949|ref|ZP_11345574.1| deoxyribodipyrimidine photo-lyase [Glaciecola lipolytica E3]
gi|410145523|dbj|GAC12779.1| deoxyribodipyrimidine photo-lyase [Glaciecola lipolytica E3]
Length = 476
Score = 317 bits (813), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 175/483 (36%), Positives = 260/483 (53%), Gaps = 34/483 (7%)
Query: 4 RGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHL 63
+ SI+WFR+DLR+ DNPAL A G VI V+I + PG S+WWL H
Sbjct: 3 KAKSIMWFRQDLRLRDNPALCAACANGDVIPVYILDEHNAQSFSPGAASKWWL-HQSLLS 61
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
++ S ++ D +++++E TGAT + +N Y+P + RD KE L +
Sbjct: 62 LNASLSEKLHVMRGNPIDVLNNIIE---QTGATHVVWNRCYEPWQIHRDKELKEQLKQRN 118
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEK-CLSMPFDPDAPLLPPKRINSGDMSR 182
I V SFN LL+EPW + + G P+ F F+ K CL P P+ + S +
Sbjct: 119 IQVESFNGSLLWEPWTIMNQSGSPYKVFTPFYRKGCLQAP--------SPRSVTSAPIQA 170
Query: 183 CPSDTLVFEDESEKGSNAL-----------LARAWSPGWSNADKALTTFINGPLIEYSKN 231
+ V+E ++G ++L + W PG A AL+ F+N + +Y +
Sbjct: 171 ----SYVYESALDEGIDSLNLMPDIPWYEQMQAHWQPGEEGAGIALSEFLNQSINDYKQA 226
Query: 232 RRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLRE 291
R TS LSPHLHFGE+S ++++ K + ++ FL IG RE
Sbjct: 227 RDVPSLNGTSHLSPHLHFGEISPHQIWYATLHK------FNGSMANADMDCFLSEIGWRE 280
Query: 292 YSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLH 351
+S Y+ ++ P + W +AW++G+TG P+VDAGMRELW TG++H
Sbjct: 281 FSYYLLYHFPTLPSENFNPKFNQYHWRGRNNDLEAWQRGQTGVPIVDAGMRELWQTGYMH 340
Query: 352 DRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDN 411
+R+R++V S+ VK L+ W G +FWD LLDADL +++ WQ+++G+ D F RI N
Sbjct: 341 NRVRMIVGSYLVKNLKTHWHHGESWFWDCLLDADLAANSASWQWVAGSGADASPFFRIFN 400
Query: 412 PQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRID 471
P +G KFD GEYVRR+ PEL LP ++IH PW+APE VL A I LG +YP P+V +
Sbjct: 401 PVTQGEKFDSEGEYVRRYCPELQNLPNKYIHKPWDAPEDVLIEANIRLGQDYPHPLVDLK 460
Query: 472 AAK 474
++
Sbjct: 461 ESR 463
>gi|229097643|ref|ZP_04228601.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock3-29]
gi|229116646|ref|ZP_04246032.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-3]
gi|423379068|ref|ZP_17356352.1| hypothetical protein IC9_02421 [Bacillus cereus BAG1O-2]
gi|423442112|ref|ZP_17419018.1| hypothetical protein IEA_02442 [Bacillus cereus BAG4X2-1]
gi|423534525|ref|ZP_17510943.1| hypothetical protein IGI_02357 [Bacillus cereus HuB2-9]
gi|423540200|ref|ZP_17516591.1| hypothetical protein IGK_02292 [Bacillus cereus HuB4-10]
gi|423546432|ref|ZP_17522790.1| hypothetical protein IGO_02867 [Bacillus cereus HuB5-5]
gi|423623773|ref|ZP_17599551.1| hypothetical protein IK3_02371 [Bacillus cereus VD148]
gi|228666818|gb|EEL22274.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock1-3]
gi|228685782|gb|EEL39702.1| Deoxyribodipyrimidine photolyase [Bacillus cereus Rock3-29]
gi|401173735|gb|EJQ80947.1| hypothetical protein IGK_02292 [Bacillus cereus HuB4-10]
gi|401181001|gb|EJQ88155.1| hypothetical protein IGO_02867 [Bacillus cereus HuB5-5]
gi|401257696|gb|EJR63893.1| hypothetical protein IK3_02371 [Bacillus cereus VD148]
gi|401633514|gb|EJS51291.1| hypothetical protein IC9_02421 [Bacillus cereus BAG1O-2]
gi|402416068|gb|EJV48387.1| hypothetical protein IEA_02442 [Bacillus cereus BAG4X2-1]
gi|402462942|gb|EJV94645.1| hypothetical protein IGI_02357 [Bacillus cereus HuB2-9]
Length = 476
Score = 317 bits (813), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 170/481 (35%), Positives = 267/481 (55%), Gaps = 18/481 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL ++G V+ V++ + + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSMGSASKWWLHHAVIDVKKQL 61
Query: 68 RSLGTSLVTK--RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LG++L+ + R+ + + SL+E ++ T +++N YDP L + + K L +GI
Sbjct: 62 EALGSTLIIRKGRTEEEIRSLIEQLRITA---VYWNICYDPDRLQSNQKMKMMLEGKGII 118
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
+ FN+ LL EPW + + F F+ P P+ + I G+ P+
Sbjct: 119 CKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQIIPK-PISKVQSIKWGN--SLPA 174
Query: 186 DTLVFEDESEKGS--NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
V E + + W P A K F + L+ YS+ R D S L
Sbjct: 175 SLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVFYSEGRDFPDQNVHSML 234
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
+P+L FG++SVR ++H + K ++ VN F++ + RE+S Y+ +++P++
Sbjct: 235 APYLSFGQISVRLMYHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
+PL + F W +E W++G TGYP +DAGMRELW TG++H+R R+ V+SF V
Sbjct: 292 VYKPLNKSFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD NG
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSE 483
EY+RRW+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R A
Sbjct: 412 EYIRRWVPELRDIPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKS 471
Query: 484 M 484
M
Sbjct: 472 M 472
>gi|195995779|ref|XP_002107758.1| hypothetical protein TRIADDRAFT_51591 [Trichoplax adhaerens]
gi|190588534|gb|EDV28556.1| hypothetical protein TRIADDRAFT_51591 [Trichoplax adhaerens]
Length = 513
Score = 317 bits (813), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 166/474 (35%), Positives = 256/474 (54%), Gaps = 7/474 (1%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
C++VW RRDLR+ DNPAL + G +I V+I+ + G G+ WWL HSL L +
Sbjct: 8 CTLVWLRRDLRLIDNPALFHAAKRGQLITVYIFDEDCSGKRRTGQACLWWLYHSLKSLRN 67
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L L+ K D+ + L +++ A +++N Y+P RD+ ++ A+ I
Sbjct: 68 QLSQWNIPLIVKSGKDAFTILKKLLDRYNADAIYWNRCYEPFEYNRDYSIEKRFVARKIK 127
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI--NSGDMSRC 183
V ++ +LYEPW V + +GQPF F +W +CLS+P P P PK N G +
Sbjct: 128 VETYQDRVLYEPWKVKNGKGQPFQLFPCYWNQCLSLP-QPRKPYDKPKFTVHNQGCVEYK 186
Query: 184 PSDTLVFE---DESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
D V++ ++ ++ L W PG A + L F+ L YS+ R T
Sbjct: 187 YDDAGVWQLLASIADNDTSTRLQDFWHPGEEGAIQKLKRFMKNSLKVYSEKRDCIWLDAT 246
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP+LHFGE+S ++H + S +L +G RE++ ++ F++
Sbjct: 247 SNLSPYLHFGEISPFTIWHTACFMRHS-TTRSISVPLHCTKRYLTELGWREFTCHLLFHY 305
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P E+ + +DE AW+ G TGYP+VDAGMR+L G++ +R+R++V+S
Sbjct: 306 PDLPEKSFKSNFHQLKLEIDEEKLHAWQNGSTGYPIVDAGMRQLSQAGFMPNRVRMIVAS 365
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F + L +PW+ G ++FW+ L+DADL WQ+I+G PD + R+ NP +G KFD
Sbjct: 366 FLIMHLLIPWQKGEEWFWNRLVDADLAQSVCNWQWIAGCGPDVAPYFRMFNPVIQGEKFD 425
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
G YVR+W+PE+A+LP ++ PW AP ++L+ A I LG YP PIV A+
Sbjct: 426 AEGYYVRKWIPEIAKLPNSYVQKPWEAPPTMLKIANITLGKTYPRPIVEHKVAR 479
>gi|374329028|ref|YP_005079212.1| FAD binding domain of DNA photolyase [Pseudovibrio sp. FO-BEG1]
gi|359341816|gb|AEV35190.1| FAD binding domain of DNA photolyase [Pseudovibrio sp. FO-BEG1]
Length = 471
Score = 317 bits (813), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 180/478 (37%), Positives = 262/478 (54%), Gaps = 24/478 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
I WFR+DLR+ DNPAL+A G VI ++I +E G G ++ WL +SL L+ SL
Sbjct: 7 IHWFRQDLRLSDNPALSAACDVGEVIPLYILNDKEYGARKLGGATKNWLHYSLKALNESL 66
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+ G L+ + D + +++ TGA +F+N Y+P + D + K L GIA +
Sbjct: 67 K--GQLLIMR--GDPAVIINSLIQETGAAGVFWNRCYEPWRVEHDAQLKTDLEENGIAAK 122
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRIN----SGDMSRC 183
SFN LL+EPW V G P+ F F+ K +P PL P ++ S + +
Sbjct: 123 SFNGSLLWEPWQVGKRDGSPYKVFTPFYRKGCLQAQEPRKPLPVPDQLRIHSFSAEGALA 182
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
+ + ED + +A ++ W G A F L +Y R TS L
Sbjct: 183 IDELNLLED---RPWSAQVSSHWEHGEKAAQNRFYAFFEDGLSDYKDGRNFPALTHTSRL 239
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SPHLHFGE+S ++ W G+ ++ F +G RE+S + FN+P
Sbjct: 240 SPHLHFGEISPNQI----------WWALGSHEETRDIDHFRSELGWREFSYSLLFNNPSL 289
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
+ L F W+ D+ AW++G+TG P+VDAGMRELW TG++H+R+R++V SF V
Sbjct: 290 PKSNLNEKFDNFPWLSDDQRLSAWQKGQTGIPIVDAGMRELWQTGYMHNRLRMIVGSFLV 349
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L L WR G ++FWD L+DADL +++ WQ+I+G D + RI NP +G KFD +G
Sbjct: 350 KNLLLDWRLGEEWFWDCLVDADLANNSASWQWIAGCGADAAPYFRIFNPILQGEKFDAHG 409
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
EY RR+LPEL LP +++ PW AP+ +LQ AG+ LG NYP PIV + ++ DEAL
Sbjct: 410 EYTRRFLPELKDLPDKYLFRPWEAPKDILQGAGVTLGENYPLPIVNLKKSR---DEAL 464
>gi|118478461|ref|YP_895612.1| deoxyribodipyrimidine photo-lyase type I [Bacillus thuringiensis
str. Al Hakam]
gi|196042568|ref|ZP_03109807.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
03BB108]
gi|118417686|gb|ABK86105.1| deoxyribodipyrimidine photo-lyase type I [Bacillus thuringiensis
str. Al Hakam]
gi|196026052|gb|EDX64720.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
03BB108]
Length = 476
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 163/479 (34%), Positives = 264/479 (55%), Gaps = 14/479 (2%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL ++G V+ V++ + + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSIGSASKWWLHHAIIDVKKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ ++ + +L +++ G T +++N YDP L + + K L +G+ +
Sbjct: 62 EALGSTLIIRKGSTE-EEILSLIEQLGITAVYWNICYDPDRLQFNQKMKMMLEDKGMICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
FN+ LL EPW + + F F+ P+ + I G+ PS
Sbjct: 121 EFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIH--KPISKVQSIKGGN--SLPSSL 176
Query: 188 LVFEDESEKGS--NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
V E + + W P A K F + L YS+ R + S L+P
Sbjct: 177 SVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSMLAP 236
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
+L FG++SV+ ++H + K ++ VN F++ + RE+S YM +++P++
Sbjct: 237 YLSFGQISVKLIYHYLINKS---TESQCSLFEKQVNSFIRQLIWREFSYYMLYHYPFTAY 293
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
+PL + F W ++ + W++G TGYP +DAGMRELW TG++H+R R+ V+SF +K
Sbjct: 294 KPLNKSFEHFPWNNEKELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLIKH 353
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD NGEY
Sbjct: 354 LLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEY 413
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
+R+W+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R A M
Sbjct: 414 IRKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSM 472
>gi|114797406|ref|YP_760502.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
neptunium ATCC 15444]
gi|114737580|gb|ABI75705.1| deoxyribodipyrimidine photolyase family protein [Hyphomonas
neptunium ATCC 15444]
Length = 485
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 182/492 (36%), Positives = 267/492 (54%), Gaps = 10/492 (2%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHS 59
MS +I+WFR DLR+ DNPAL A V +G +I V++ P G SRWWL S
Sbjct: 1 MSSASPAILWFREDLRLTDNPALNAAVNSGRPLICVYLRETGAGAPREMGGASRWWLNKS 60
Query: 60 LSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
L+ L +SL ++G L T R+ + + +V+ TGA +F+N Y D K+ L
Sbjct: 61 LASLGASLEAIGGKL-TLRTGPAEKIIPALVEETGAAAVFWNRRYGLPERETDAAIKKTL 119
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGD 179
G+ +SFN LL EPWD+ G + F FW + L + P A + PK+I
Sbjct: 120 KDNGVECQSFNGRLLMEPWDLKTGSGGWYKVFTPFW-RALQAQYKPPAFIPSPKKIAGAS 178
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
E S + A AW PG A K L F++GP+ +Y R +T
Sbjct: 179 AETENLKDWGLHPEKPDWSGGIAA-AWEPGEVGAQKRLDAFLDGPVSDYVGTRNLPGVST 237
Query: 240 -TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LSPHL FGE+ +++ VR + E +A ++S +FL I RE+S + +
Sbjct: 238 GTSRLSPHLRFGEIGPAQIWRAVRARL-----EAQQADEDSARVFLSEIAWREFSYTLLY 292
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
+P + +W D+ F AW +G+TGYP+VDAGMRELW TGW+H+R+R++V
Sbjct: 293 YNPALATENYNSNFNQMAWRKDDSGFAAWSRGQTGYPIVDAGMRELWHTGWMHNRVRMIV 352
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF K L LPW+ G ++FWDTL+DAD ++ WQ+ +G+ D + R+ NP +G K
Sbjct: 353 ASFLTKHLLLPWQQGEQWFWDTLVDADPAANPASWQWTAGSGADAAPYFRVFNPISQGQK 412
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FD +G YVR W PELA LP +++H P+ A L+ A + LG++YP PI+ + R
Sbjct: 413 FDEDGAYVRHWCPELAGLPDKYLHAPFEADAQTLKRARVMLGTDYPEPIIDHPVGRQRAL 472
Query: 479 EALSEMWQQEAA 490
+A M +++ A
Sbjct: 473 DAYKAMKEEQTA 484
>gi|384181025|ref|YP_005566787.1| deoxyribodipyrimidine photolyase family protein [Bacillus
thuringiensis serovar finitimus YBT-020]
gi|324327109|gb|ADY22369.1| deoxyribodipyrimidine photolyase family protein [Bacillus
thuringiensis serovar finitimus YBT-020]
Length = 476
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 167/479 (34%), Positives = 265/479 (55%), Gaps = 14/479 (2%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL ++G V+ V++ + + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSIGSASKWWLHHAIIDVQRQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
++G++L+ R + + +L ++K G T +++N YDP L + + K L +GI +
Sbjct: 62 EAVGSTLII-RKGNILEEILSLIKQLGITAVYWNICYDPERLQFNQKMKMMLEDKGITCK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
FN+ LL EPW + + F F+ P P+ +RI G+ P+
Sbjct: 121 EFNSHLLLEPWVIKKKDNTEYKVFTPFYN-AFQKQIVPK-PISKVQRIKGGN--SLPASL 176
Query: 188 LVFEDESEKGS--NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
V E + W P A K F + L YS+ R + S L+P
Sbjct: 177 SVSELHLLPTIRWTTHMESIWDPTEEGAYKTCKKFFSSKLASYSEGRDFPNENAHSMLAP 236
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
+L FG++SV+ ++H + K ++ VN F++ + RE+S Y+ +++P++
Sbjct: 237 YLSFGQISVKWMYHYLIDKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTVY 293
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
+PL + + F W +E W++G TGYP +DAGMRELW TG++H+R R+ V+SF VK
Sbjct: 294 KPLNKNFEHFPWNKEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKH 353
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD NGEY
Sbjct: 354 LLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEY 413
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
+R+W+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R A M
Sbjct: 414 IRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVDHKAARERALCAYKSM 472
>gi|296448539|ref|ZP_06890415.1| Deoxyribodipyrimidine photo-lyase [Methylosinus trichosporium OB3b]
gi|296253957|gb|EFH01108.1| Deoxyribodipyrimidine photo-lyase [Methylosinus trichosporium OB3b]
Length = 477
Score = 317 bits (812), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 189/463 (40%), Positives = 263/463 (56%), Gaps = 15/463 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I+WFRRDLR+ DN ALAA GA ++A+FI +++ P G +RWWL HSL L
Sbjct: 6 ILWFRRDLRLTDNLALAAAATTGAPLVALFILDEDDDPPL--GGAARWWLHHSLVSLTHD 63
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
LR G SL +R S +SL +V TGA +F++ +Y+P +L RD + L A G+
Sbjct: 64 LRERGLSLTLRRGP-SAASLTRLVPETGARAVFWSRVYEPAALRRDGEIETMLRASGVEA 122
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
+SF+ LL+EP ++ AQG+ F FA FW ++ P AP P R+ + R
Sbjct: 123 QSFSGALLFEPGEIRSAQGRAFRVFAPFWRAAQAI-VAPGAPKPAPTRLRAAPAPRSERL 181
Query: 187 TLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPH 246
E L AW PG S A L F+ + +Y+ R S LSPH
Sbjct: 182 EDWGLTPREPDWAGGLRDAWRPGESGARARLDAFVEDGVRDYAAARDFPAKDNVSRLSPH 241
Query: 247 LHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHER 306
LH+GE+ R+V+ + EG A + FL+ +G RE+ ++ +HP E
Sbjct: 242 LHWGEIGPRQVWRAI---------EGADAPRADIAAFLRELGWREFCHHILLDHPSLPEA 292
Query: 307 PLLGHLKFFSWVVDEG-YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
PL F W D+G F+AW +G TGYP VDAGMR+LW TGW+H+R+R++V+SF VK
Sbjct: 293 PLDPDFARFPWAQDDGTLFRAWARGATGYPFVDAGMRQLWLTGWMHNRLRMIVASFLVKH 352
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
L L WR G ++F+DTL+DADL S+A WQ+ +G D + RI NP +G K+D +G +
Sbjct: 353 LLLDWREGERWFFDTLVDADLSSNAFNWQWAAGCGADAAPYFRIFNPVLQGEKYDADGAF 412
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
VRR++PELARL +IH PW APE L+ AG+ LG YP I+
Sbjct: 413 VRRFVPELARLDAHYIHRPWTAPEQKLREAGVRLGETYPLAII 455
>gi|407973400|ref|ZP_11154312.1| blue light photoreceptor cryptochrome [Nitratireductor indicus
C115]
gi|407431241|gb|EKF43913.1| blue light photoreceptor cryptochrome [Nitratireductor indicus
C115]
Length = 489
Score = 317 bits (812), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 184/480 (38%), Positives = 263/480 (54%), Gaps = 17/480 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++V FR DLR+ DN AL+A G V+A FI E EG G RWWL HSL L
Sbjct: 17 TLVLFRHDLRLADNLALSAAADCGRPVVAAFILDEESEGMRPLGGARRWWLHHSLCALAG 76
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L LG LV +R + + + + TGA +F+N Y+P ++ D + K AL GIA
Sbjct: 77 RLSDLGAELVLRRGR-MAETTVALARETGAATVFWNRRYEPAAIHADKKMKAALRENGIA 135
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRIN--SGDMSRC 183
SF LL+EPW + G + F FW + LS F P P P++++ GD+
Sbjct: 136 AESFTGQLLHEPWRIKTGSGGFYRVFTPFW-RTLSEGFVPREPADAPEKLSVFKGDVESD 194
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
D + L +AW+PG + A K L F++G Y R + S TS L
Sbjct: 195 RLDDWQLLPTRPDWAGGL-RKAWTPGETGAHKRLEAFLDGGGKGYETLRDRMASEATSSL 253
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SPHL GE++ +++ + + N + F K +G RE+ ++ F++P
Sbjct: 254 SPHLSHGEITPYQIWQHLEHR--------NDLTPGDLQTFRKELGWREFCWHLLFHNPQL 305
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
+ F W D+G +AW++GRTGYP+VDA MR+LW TGW+H+R R++V+SF V
Sbjct: 306 AAKNFNSDFDAFPWNRDDGALQAWQRGRTGYPVVDAAMRQLWQTGWMHNRARMIVASFLV 365
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L+L WR G ++FWDTL+DAD S+ WQ+++G+ D + RI NP +G KFD G
Sbjct: 366 KDLRLDWREGEQWFWDTLVDADPASNPANWQWVAGSGADAAPYFRIFNPVLQGEKFDSGG 425
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSE 483
+Y+RR++PEL LP++ IH PW A L+ AGI LG YP P+V D A R + ALS+
Sbjct: 426 DYIRRYVPELENLPSKGIHKPWKAKGEALKKAGITLGKTYPEPMV--DHATAR-EHALSD 482
>gi|402771126|ref|YP_006590663.1| DNA photolyase [Methylocystis sp. SC2]
gi|401773146|emb|CCJ06012.1| DNA photolyase, FAD-binding [Methylocystis sp. SC2]
Length = 480
Score = 317 bits (811), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 185/473 (39%), Positives = 264/473 (55%), Gaps = 33/473 (6%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFR DLR+ DNPAL A R GA ++A++I E G + G +RWWL HSL L
Sbjct: 5 AIVWFRNDLRISDNPALLAAARTGAPLVALYILDDESPGEWRTGAAARWWLHHSLRALSQ 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SL + G SL+ +R + +++ TGA +F+N LY+P ++ RD + L +
Sbjct: 65 SLAARGVSLILRRGR-APYVFEQIIAETGAGAVFWNKLYEPWAIRRDAELEAQLRDDAVE 123
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMP----------FDPDAPLLPPKRI 175
F+ +L+EP + QG+ F F FW CL+ P F APL P
Sbjct: 124 THCFHESVLFEPEKLRTKQGENFRIFTPFWRACLAAPPPERPHPAPEFLHAAPLPP---- 179
Query: 176 NSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
+S D+ D ++ + + + W G + A L F + +Y R
Sbjct: 180 DSDDL-----DAWRLLPQNPDWAIGM-RKVWLVGETAARAELADFARHHVGDYKVERDFM 233
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
S LSPHLHFGE+S R+V+H + +E G E+ +L+ +G RE+ +
Sbjct: 234 GRVGVSRLSPHLHFGELSPREVWHAI--------SEPQSIGGEA---YLRELGWREFCHH 282
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+ ++ ERPL + F + DE AWR G+TGYPLVDA MRELW TGW+H+R R
Sbjct: 283 LLISNWDLPERPLDRTFERFPYRDDETSLDAWRNGQTGYPLVDAAMRELWITGWMHNRAR 342
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
+V +SF +K L + WR G ++FWDTL+DADL +++ WQ+++G D + RI NP +
Sbjct: 343 LVSASFLIKHLLIDWRKGERWFWDTLVDADLANNSANWQWVAGCGADAAPYFRIFNPALQ 402
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
G KFDP+G YVRR++PELA L +IH PW APE VL+AAG++LG YP PIV
Sbjct: 403 GEKFDPDGAYVRRYVPELASLDVRYIHRPWAAPEDVLRAAGVKLGVTYPHPIV 455
>gi|228966105|ref|ZP_04127168.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
sotto str. T04001]
gi|402559511|ref|YP_006602235.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-771]
gi|423359850|ref|ZP_17337353.1| hypothetical protein IC1_01830 [Bacillus cereus VD022]
gi|228793590|gb|EEM41130.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
sotto str. T04001]
gi|401083011|gb|EJP91275.1| hypothetical protein IC1_01830 [Bacillus cereus VD022]
gi|401788163|gb|AFQ14202.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-771]
Length = 476
Score = 317 bits (811), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/487 (34%), Positives = 271/487 (55%), Gaps = 30/487 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ V++ ++ + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDEDFLMGEASKWWLHHAVIDVKKQL 61
Query: 68 RSLGTSLVTK--RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LG++L+ + R+ + + SL+E + T +++N YDP L + + K L +GI
Sbjct: 62 EALGSTLIIRKGRTEEEILSLIEQLDITA---VYWNICYDPDRLQSNQKMKMMLEDKGII 118
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLL----PPKRINS 177
+ FN+ LL EPW + + F AF ++ + P + P ++
Sbjct: 119 CKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQSIKWGSSLPASLSV 178
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
++ P+ ES W P A K F + L YS+ R +
Sbjct: 179 SELHLLPTIPWTSHIES----------IWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQ 228
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
S L+P+L FG++SV+ ++H + K ++ VN F++ + RE+S Y+
Sbjct: 229 NAHSMLAPYLSFGQISVKLMYHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLL 285
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
+++P++ +PL + + F W +E + W++G TGYP +DAGMRELW TG++H+R R+
Sbjct: 286 YHYPFTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMA 345
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V+SF VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G
Sbjct: 346 VASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGE 405
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
KFD NGEY+R+W+PEL +P ++IH PW APE +LQ A I+LG+ YP P+V AA+ R
Sbjct: 406 KFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNTYPLPVVDHKAARERA 465
Query: 478 DEALSEM 484
A M
Sbjct: 466 LCAYKSM 472
>gi|229030832|ref|ZP_04186854.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH1271]
gi|228730481|gb|EEL81439.1| Deoxyribodipyrimidine photolyase [Bacillus cereus AH1271]
Length = 476
Score = 317 bits (811), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 165/477 (34%), Positives = 262/477 (54%), Gaps = 10/477 (2%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ V++ ++ + G ++WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDETFSIGSAAKWWLHHAIIDVQKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ R ++ +L +++ G T +++N YDP L + + K L +GI +
Sbjct: 62 EALGSTLII-RKGNTQEEILSLIEQLGITAVYWNICYDPERLQSNQKMKMMLEDKGIICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
FN+ LL EPW + + F F+ P P+ +RI G+
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPK-PISKVQRIKGGNSLPASLSV 178
Query: 188 LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHL 247
+ + W P A K F + L YS+ R + S L+P+L
Sbjct: 179 SKLHLLPTIPWTSHIESMWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNENAHSMLAPYL 238
Query: 248 HFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERP 307
FG++SVR ++H + K ++ VN F++ RE+S Y+ +++P++ +P
Sbjct: 239 SFGQISVRWMYHYLINKS---TERQCSLFEKQVNSFIRQFIWREFSYYLLYHYPFTVYKP 295
Query: 308 LLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 367
L + F W +E W++G TGYP +DAGMRELW TG++H+R R+ V+SF VK L
Sbjct: 296 LNKSFEHFPWNNEEELLTVWQKGDTGYPFIDAGMRELWQTGFMHNRARMAVASFLVKHLL 355
Query: 368 LPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVR 427
+PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD +GEY+R
Sbjct: 356 IPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEYIR 415
Query: 428 RWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
+W+PEL +P ++IH PW APE +LQ A I+LG YP PIV AA+ R A M
Sbjct: 416 KWVPELRDMPNKYIHKPWEAPEHILQEANIQLGHTYPLPIVDHKAARERALCAYKSM 472
>gi|228934418|ref|ZP_04097254.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228825271|gb|EEM71067.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 476
Score = 317 bits (811), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 163/485 (33%), Positives = 266/485 (54%), Gaps = 26/485 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL ++G V+ V++ + + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSMGSASKWWLHHAIIDVKKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ ++ + +L +V+ G T +++N YDP L + + K L +G+ +
Sbjct: 62 EALGSTLIIRKGSTE-EEILSLVEQLGITAVYWNICYDPDRLQFNQKMKMMLEDKGMICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLLP----PKRINSGD 179
FN+ LL EPW + + F AF ++ + P + P ++ +
Sbjct: 121 EFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVSLSVSE 180
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+ P+ ES W P A K F + L YS+ R +
Sbjct: 181 LHLLPTIPWTSHMES----------IWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNA 230
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
S L+P+L FG++SV+ ++H + K ++ VN F++ + RE+S Y+ ++
Sbjct: 231 HSMLAPYLSFGQISVKLIYHYLINKS---TESQCSLFEKQVNSFIRQLIWREFSYYLLYH 287
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
+P++ +PL + F W +E + W++G TGYP +DAGMRELW TG++H+R R+ V+
Sbjct: 288 YPFTAYKPLNKSFEHFPWNNEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVA 347
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF +K L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KF
Sbjct: 348 SFLIKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKF 407
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
D NGEY+R+W+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R
Sbjct: 408 DKNGEYIRKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALC 467
Query: 480 ALSEM 484
A M
Sbjct: 468 AYKSM 472
>gi|402556671|ref|YP_006597942.1| deoxyribodipyrimidine photolyase [Bacillus cereus FRI-35]
gi|401797881|gb|AFQ11740.1| deoxyribodipyrimidine photolyase [Bacillus cereus FRI-35]
Length = 476
Score = 317 bits (811), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 165/491 (33%), Positives = 272/491 (55%), Gaps = 38/491 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ V+I ++ + G ++WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYI----QDETFSIGSAAKWWLHHAIIDVQKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
++LG + + R + +L +++ T +++N Y+P L + + K L +GI +
Sbjct: 62 KALGATFII-RKGKTQEEILSLIEQLDITAVYWNICYEPDRLQSNQKMKMILEDKGIICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS---------- 177
FN+ LL EPW + + F F+ F A P ++ S
Sbjct: 121 EFNSHLLLEPWMIKKKDNTEYKVFTPFYN-----AFQKQAIPKPTSKVQSIKWGSSLPAS 175
Query: 178 ---GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRK 234
++ P+ + ES W+P A K F + L YS+ R
Sbjct: 176 LSVSELHLLPTIPWTYHMES----------IWNPTEEGAYKTFKKFFSSKLTFYSEGRDF 225
Query: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKA-GDESVNLFLKSIGLREYS 293
+ S L+P+L FG++SV+ +FH + ++ +NE + ++ VN F++ RE+S
Sbjct: 226 PNQNVHSMLAPYLSFGQISVKLMFHYL----INKSNEKQCSLFEQQVNSFIRQFIWREFS 281
Query: 294 RYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDR 353
Y+ +++P++ +PL + + F W +E + W++G+TGYP +DAGMRELW TG++H+R
Sbjct: 282 YYLLYHYPFTVYKPLNKNFEHFPWNNEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNR 341
Query: 354 IRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQ 413
R+ V+SF VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP
Sbjct: 342 ARMAVASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPI 401
Query: 414 FEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAA 473
+G KFD +GEY+R+W+PEL +P ++IH PW APE +LQ A I+LG+ YP P+V AA
Sbjct: 402 TQGEKFDKDGEYIRKWIPELRDMPNKYIHKPWEAPEHILQKANIQLGNTYPLPVVDHKAA 461
Query: 474 KCRLDEALSEM 484
+ R A M
Sbjct: 462 RERALCAYKSM 472
>gi|423447663|ref|ZP_17424542.1| hypothetical protein IEC_02271 [Bacillus cereus BAG5O-1]
gi|401130074|gb|EJQ37743.1| hypothetical protein IEC_02271 [Bacillus cereus BAG5O-1]
Length = 476
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 169/481 (35%), Positives = 267/481 (55%), Gaps = 18/481 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL ++G V+ V++ + + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSMGSASKWWLHHAVIDVKKQL 61
Query: 68 RSLGTSLVTK--RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LG++L+ + R+ + + SL+E ++ T +++N YDP L + + K L +GI
Sbjct: 62 EALGSTLIIRKGRTEEEIRSLIEQLRITA---VYWNICYDPDRLQSNQKMKMMLEGKGII 118
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
+ FN+ LL EPW + + F F+ P P+ + I G+ P+
Sbjct: 119 CKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQIIPK-PISKVQSIKWGN--SLPA 174
Query: 186 DTLVFEDESEKGS--NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
V E + + W P A K F + L+ YS+ R D S L
Sbjct: 175 SLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVFYSEGRDFPDQNVHSML 234
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
+P+L FG++SVR ++H + K ++ VN F++ + RE+S Y+ +++P++
Sbjct: 235 APYLSFGQISVRLMYHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
+PL + F W +E W++G TGYP +DAGMRELW TG++H+R R+ V+SF V
Sbjct: 292 VYKPLNKSFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L +PW+ G K+F DTL+DAD+ ++ +GWQ+++G+ D + RI NP +G KFD NG
Sbjct: 352 KHLLIPWQEGAKWFMDTLIDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSE 483
EY+RRW+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R A
Sbjct: 412 EYIRRWVPELRDIPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKS 471
Query: 484 M 484
M
Sbjct: 472 M 472
>gi|434376106|ref|YP_006610750.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
gi|401874663|gb|AFQ26830.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
Length = 476
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/487 (34%), Positives = 270/487 (55%), Gaps = 30/487 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
I F++D R+ DNPAL V++G V+ V++ ++ + G S+WWL H++ + L
Sbjct: 6 IAMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDEDFLMGEASKWWLHHAVIDVKKQL 61
Query: 68 RSLGTSLVTK--RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LG++L+ + R+ + + SL+E + T +++N YDP L + + K L +GI
Sbjct: 62 EALGSTLIIRKGRTEEEILSLIEQLDITA---VYWNICYDPDRLQSNQKMKMMLEDKGII 118
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLL----PPKRINS 177
+ FN+ LL EPW + + F AF ++ + P + P ++
Sbjct: 119 CKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQSIKWGSSLPASLSV 178
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
++ P+ ES W P A K F + L YS+ R +
Sbjct: 179 SELHLLPTIPWTSHIES----------IWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQ 228
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
S L+P+L FG++SV+ ++H + K ++ VN F++ + RE+S Y+
Sbjct: 229 NAHSMLAPYLSFGQISVKLMYHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLL 285
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
+++P++ +PL + + F W +E + W++G TGYP +DAGMRELW TG++H+R R+
Sbjct: 286 YHYPFTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMA 345
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V+SF VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G
Sbjct: 346 VASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGE 405
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
KFD NGEY+R+W+PEL +P ++IH PW APE +LQ A IELG+ YP P+V AA+ R
Sbjct: 406 KFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIELGNTYPLPVVDHKAARERA 465
Query: 478 DEALSEM 484
A M
Sbjct: 466 LCAYKSM 472
>gi|229185362|ref|ZP_04312545.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BGSC 6E1]
gi|376267016|ref|YP_005119728.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F837/76]
gi|228598095|gb|EEK55732.1| Deoxyribodipyrimidine photolyase [Bacillus cereus BGSC 6E1]
gi|364512816|gb|AEW56215.1| Deoxyribodipyrimidine photolyase [Bacillus cereus F837/76]
Length = 476
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 163/479 (34%), Positives = 263/479 (54%), Gaps = 14/479 (2%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL ++G V+ V++ + + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSIGSASKWWLHHAIIDVKKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ ++ + +L +++ G T +++N YDP L + + K L +G+ +
Sbjct: 62 EALGSTLIIRKGSTE-EEILSLIEQLGITAVYWNICYDPDRLQFNQKMKMMLEDKGMICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
FN+ LL EPW + + F F+ P+ + I G+ PS
Sbjct: 121 EFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIH--KPISKVQSIKGGN--SLPSSL 176
Query: 188 LVFEDESEKGS--NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
V E + + W P A K F + L YS+ R + S L+P
Sbjct: 177 SVSELHLLPTIPWTSHMESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSMLAP 236
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
+L FG++SV+ ++H + K ++ VN F++ + RE+S YM +++P++
Sbjct: 237 YLSFGQISVKLIYHYLINKS---TESQCSLFEKQVNSFIRQLIWREFSYYMLYHYPFTAY 293
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
+PL + F W ++ + W++G TGYP +DAGMRELW TG++H+R R+ V+SF +K
Sbjct: 294 KPLNKSFEHFPWNNEKELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFLIKH 353
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD NGEY
Sbjct: 354 LLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGEY 413
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
+R W+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R A M
Sbjct: 414 IREWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKSM 472
>gi|114570041|ref|YP_756721.1| deoxyribodipyrimidine photo-lyase type I [Maricaulis maris MCS10]
gi|114340503|gb|ABI65783.1| deoxyribodipyrimidine photo-lyase type I [Maricaulis maris MCS10]
Length = 499
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 180/482 (37%), Positives = 265/482 (54%), Gaps = 17/482 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFRRDLR+ DNPAL A VR+G ++ FI P+ PGR SRWWL HSL+ L S
Sbjct: 11 LVWFRRDLRLHDNPALWAAVRSGRPLVCAFIDDPDAVAQLAPGRASRWWLHHSLAALSRS 70
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
+R G LV +R D+ S L+ + TG++++F+N +P D L +G+
Sbjct: 71 IRQRGGQLVLRRG-DTTSELVRLCGETGSSEVFWNRGDNPTRDSGDTALAARLADRGVKA 129
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
R F + L+ P + G+P+ F FW+ CL P +P A L P R+ ++ SD
Sbjct: 130 RGFASGTLFNPATHLNGSGKPYRVFTPFWKACLRAP-EPSAALPAPDRLPGAAVT--ASD 186
Query: 187 TLVFEDESEKGSN----ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
L ED S + + ++ W PG A L F+ L +Y ++R + D TS
Sbjct: 187 NL--EDWSLRPQAPDWASGFSQDWEPGEDGALNRLEAFLANELADYPQSRDRPDEDGTSR 244
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHL +GE+S R ++H VR G+ G E FL +G R+++ Y++ +
Sbjct: 245 LSPHLAWGEISPRTIWHTVRDHA---ERGGSFQGGEK---FLSELGWRDFAIYLAHHFGS 298
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ F W + AW++G+TG P+VDAGMR+LW TGW+H+R+R++ +SF
Sbjct: 299 LRDENFNRQFDHFPWRSNPAGLDAWKRGQTGIPIVDAGMRQLWTTGWMHNRVRMITASFL 358
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
+K L + WR GM +F DTL+DADL +A WQ+++G+ D + RI NP +G +FDP
Sbjct: 359 IKHLGVHWRDGMAWFEDTLVDADLNVNAASWQWVAGSGADAAPYFRIFNPVTQGERFDPQ 418
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
G YV RW+PEL L + +H PW P + L AAGI LG YP P+ + + + +A
Sbjct: 419 GLYVHRWVPELTGLSGKAVHAPWTRPANELIAAGISLGQTYPAPVTDLKTGREQALDAYQ 478
Query: 483 EM 484
M
Sbjct: 479 TM 480
>gi|196037804|ref|ZP_03105114.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus NVH0597-99]
gi|196031074|gb|EDX69671.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus NVH0597-99]
Length = 476
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 164/485 (33%), Positives = 267/485 (55%), Gaps = 26/485 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL ++G V+ V++ + + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSMGSASKWWLHHAIIDVKKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ ++ + + +L +V+ G T +++N YDP L + + K L +G+ +
Sbjct: 62 EALGSTLIIRKGS-TQEEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEDKGMICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLLP----PKRINSGD 179
FN+ LL EPW + + F AF ++ + P + P ++ +
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVSLSVSE 180
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+ P+ ES W P A K F + L YS+ R +
Sbjct: 181 LHLLPTIPWTSHMES----------IWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNA 230
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
S L+P+L FG++SV+ ++H + K ++ VN F++ + RE+S Y+ ++
Sbjct: 231 HSMLAPYLSFGQISVKLIYHYLINKS---TESQCSLFEKQVNSFIRQLIWREFSYYLLYH 287
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
+P++ +PL + F W +E + W++G TGYP +DAGMRELW TG++H+R R+ V+
Sbjct: 288 YPFTAYKPLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVA 347
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KF
Sbjct: 348 SFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKF 407
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
D NGEY+R+W+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R
Sbjct: 408 DKNGEYIRKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALC 467
Query: 480 ALSEM 484
A M
Sbjct: 468 AYKSM 472
>gi|49185961|ref|YP_029213.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Sterne]
gi|65320437|ref|ZP_00393396.1| COG0415: Deoxyribodipyrimidine photolyase [Bacillus anthracis str.
A2012]
gi|165868433|ref|ZP_02213093.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0488]
gi|167631730|ref|ZP_02390057.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0442]
gi|167637299|ref|ZP_02395579.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0193]
gi|170684891|ref|ZP_02876116.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0465]
gi|177649852|ref|ZP_02932853.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0174]
gi|190564773|ref|ZP_03017694.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Tsiankovskii-I]
gi|227814024|ref|YP_002814033.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. CDC 684]
gi|229603798|ref|YP_002867382.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0248]
gi|254685712|ref|ZP_05149571.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. CNEVA-9066]
gi|254723122|ref|ZP_05184910.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A1055]
gi|254738183|ref|ZP_05195886.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Western North America USA6153]
gi|254742647|ref|ZP_05200332.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Kruger B]
gi|254752497|ref|ZP_05204533.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Vollum]
gi|254761013|ref|ZP_05213037.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Australia 94]
gi|270000553|ref|NP_845490.2| deoxyribodipyrimidine photolyase [Bacillus anthracis str. Ames]
gi|386736907|ref|YP_006210088.1| Deoxyribodipyrimidine photolyase [Bacillus anthracis str. H9401]
gi|421510721|ref|ZP_15957609.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. UR-1]
gi|421636758|ref|ZP_16077356.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. BF1]
gi|49179888|gb|AAT55264.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Sterne]
gi|164715159|gb|EDR20676.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0488]
gi|167514806|gb|EDR90172.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0193]
gi|167532028|gb|EDR94664.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0442]
gi|170671151|gb|EDT21889.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0465]
gi|172083804|gb|EDT68863.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0174]
gi|190564090|gb|EDV18054.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. Tsiankovskii-I]
gi|227005678|gb|ACP15421.1| deoxyribodipyrimidine photo-lyase [Bacillus anthracis str. CDC 684]
gi|229268206|gb|ACQ49843.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. A0248]
gi|269850227|gb|AAP26976.2| deoxyribodipyrimidine photo-lyase [Bacillus anthracis str. Ames]
gi|384386759|gb|AFH84420.1| Deoxyribodipyrimidine photolyase [Bacillus anthracis str. H9401]
gi|401819244|gb|EJT18426.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. UR-1]
gi|403395554|gb|EJY92792.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. BF1]
Length = 476
Score = 316 bits (809), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 164/485 (33%), Positives = 266/485 (54%), Gaps = 26/485 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL ++G V+ V++ + + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSMGSASKWWLHHAIIDVKKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ ++ + +L +V+ G T +++N YDP L + + K L +G+ +
Sbjct: 62 EALGSTLIIRKGSTQ-EEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEHKGMICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLLP----PKRINSGD 179
FN+ LL EPW + + F AF ++ + P + P ++ +
Sbjct: 121 EFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVSLSVSE 180
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+ P+ ES W P A K F + L YS+ R +
Sbjct: 181 LHLLPTIPWTSHMES----------IWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNA 230
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
S L+P+L FG++SV+ ++H + K ++ VN F++ + RE+S Y+ ++
Sbjct: 231 HSMLAPYLSFGQISVKLIYHYLINKS---TESQCSLFEKQVNSFIRQLIWREFSYYLLYH 287
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
+P++ +PL + F W +E + W++G TGYP +DAGMRELW TG++H+R R+ V+
Sbjct: 288 YPFTAYKPLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVA 347
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KF
Sbjct: 348 SFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKF 407
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
D NGEY+R+W+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R
Sbjct: 408 DKNGEYIRKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALC 467
Query: 480 ALSEM 484
A M
Sbjct: 468 AYKSM 472
>gi|294500818|ref|YP_003564518.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551]
gi|294350755|gb|ADE71084.1| FAD binding domain of DNA photolyase [Bacillus megaterium QM B1551]
Length = 475
Score = 316 bits (809), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 167/473 (35%), Positives = 260/473 (54%), Gaps = 16/473 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IVW R+D R+ DNPAL + G V+ V+I EE G S+WWL H+L+ +S+
Sbjct: 6 IVWIRKDFRLVDNPALFHAAKEGMVVPVYIHDDYEESSM--GSASKWWLHHALNDFKTSI 63
Query: 68 RSL-GTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
+ + GT +V K + V L +++ T A +++N Y+P +L RD + + Q I +
Sbjct: 64 KKIEGTLIVQKGNPKDV--LQKLLHETNAQDIYWNSRYEPHALKRDKELQAFFSEQQINI 121
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
R+F LL+EPW + G P+ F A+++ K++ S S P +
Sbjct: 122 RTFEGFLLHEPWKITKENGDPYKVFTAYYKASQKHSVSSAV-----KKVTSIQASSKPVE 176
Query: 187 TLVFEDESEKGS---NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
+L D S + + W A TF+ L+ Y K R A SFL
Sbjct: 177 SLSVSDLDLLPSIPWDETIKSTWEATEKGAIDVFKTFLKNKLLHYEKGRDFPAEALNSFL 236
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SP+L G++S R ++H +R K G+ A ++ +F++ + R+++ + ++ P++
Sbjct: 237 SPYLATGQLSARVLYHYLRTKA---EKVGSDAFEQQAEMFIRQLIWRDFAYQLLYHFPHT 293
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
PL K F W +AW+ G+TGYPLVDAGMRELW TG++H+R+R+V +SF V
Sbjct: 294 TTEPLNEKFKQFQWADGNEELQAWKNGKTGYPLVDAGMRELWETGFMHNRVRMVAASFLV 353
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + W+ G +F+DTL+DADL ++ +GWQ+++G+ D + RI NP + KFD G
Sbjct: 354 KHLLIHWKHGANWFFDTLVDADLANNTMGWQWVAGSGADAAPYFRIFNPITQSEKFDKEG 413
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
EY+++WLPEL +P+ +IH PW AP VL+ A + L YP PIV AA+ R
Sbjct: 414 EYIKKWLPELKDIPSSYIHKPWEAPADVLEKANVTLNKTYPAPIVDHKAARER 466
>gi|452823604|gb|EME30613.1| deoxyribodipyrimidine photo-lyase / cryptochrome [Galdieria
sulphuraria]
Length = 1042
Score = 315 bits (808), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 178/495 (35%), Positives = 265/495 (53%), Gaps = 23/495 (4%)
Query: 4 RGCSIVWFR-RDLRVEDNPALAAGV-RAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLS 61
R S+VWFR DLR++DNPAL A + R A+F+W+P G +YP + WWL+ SL
Sbjct: 105 RESSLVWFRGHDLRLDDNPALLAALERKTKCYAIFLWSPNSFGRWYPSKPWLWWLRSSLL 164
Query: 62 HLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTA 121
L+ L LG L+ R+ + L VV+ GAT +F+N Y+P+ L + R +
Sbjct: 165 VLERELIKLGVKLLC-RNGLAEEELPSVVREIGATVIFWNRAYEPIYLKAEERVISMFSG 223
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMS 181
+ + SF ++L EPW++ + F F ++ + LPP S
Sbjct: 224 STVKLVSFKSELFVEPWELQNDHSPFFPDFHSYMRAWMLQ--------LPPPEPLSISKQ 275
Query: 182 RCPSDTLVFEDESEKGSNALLARA----------WSPGWSNADKALTTFINGPLIEYSKN 231
C S E E++ G LL++ W PG A + L F++ ++
Sbjct: 276 YCTSLPYT-ELENQVGQLDLLSKEDIEAFESKNNWKPGCRQAQRTLKAFLSDSFDKFGAA 334
Query: 232 RRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLRE 291
R + TS LSPHL FGE+SV+++F++VR K+V+ E ++ FLK++ LRE
Sbjct: 335 RYRRSLTGTSKLSPHLKFGELSVKRIFYMVR-KRVANNRENWYLYSQAAKAFLKNLCLRE 393
Query: 292 YSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLH 351
Y+ ++ + +P + + PL F W D W G TGYP+VDA +REL +TGW+H
Sbjct: 394 YAYHILYYYPNAIDTPLQSVFNLFPWERDYSLLDRWSVGHTGYPMVDAAIRELRSTGWIH 453
Query: 352 DRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDN 411
+ +R +++SF + L LPW+ G + + L+D DL ++ LGWQ+ +G D + N
Sbjct: 454 NILRFLLASFLTRYLLLPWQLGAHFLYSHLIDGDLAANTLGWQWTAGCNTDSFPLSCLVN 513
Query: 412 PQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRID 471
P G K+D +G YVR+W+PELA L ++IH PW APE VL A I LG YPFPIV +
Sbjct: 514 PIGMGRKYDSSGTYVRQWIPELASLQDKYIHCPWQAPEDVLANANITLGKTYPFPIVDVS 573
Query: 472 AAKCRLDEALSEMWQ 486
A+ R EAL M Q
Sbjct: 574 FARSRAKEALRIMRQ 588
>gi|229191248|ref|ZP_04318236.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876]
gi|228592263|gb|EEK50094.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10876]
Length = 476
Score = 315 bits (808), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 166/480 (34%), Positives = 265/480 (55%), Gaps = 16/480 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ V++ ++ + G ++WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDETFSIGSAAKWWLHHAIIDVQKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ R ++ +L ++K T +++N YDP L + + K L +GI +
Sbjct: 62 EALGSTLII-RKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMMLEDKGIICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM-SRCPSD 186
FN+ LL EPW + + F F+ F P R+ S S P+
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYN-----AFQKQVIPKPISRVQSIKWGSSLPAS 175
Query: 187 TLVFEDESEKGS--NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
V E + + W P A K F + L YS+ R + S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSMLA 235
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
P+L FG++SV+ ++H + K ++ V F++ + RE+S Y+ +++P++
Sbjct: 236 PYLSFGQISVKLMYHYLINKS---TERQCSFFEKQVISFIRQLIWREFSYYLLYHYPFTV 292
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
+PL + + F W +E + W++G TGYP +DAGMRELW TG++H+R R+ V+SF VK
Sbjct: 293 YKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD NGE
Sbjct: 353 HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGE 412
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
Y+R+W+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R A M
Sbjct: 413 YIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVEHKAARERALCAYKSM 472
>gi|42782239|ref|NP_979486.1| deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 10987]
gi|42738164|gb|AAS42094.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
ATCC 10987]
Length = 476
Score = 315 bits (808), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 165/485 (34%), Positives = 267/485 (55%), Gaps = 26/485 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL ++G V+ V++ + + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFKATQSGEVVPVYV----HDETFSMGSASKWWLHHAIIDVKKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ ++ + +L +++ G T +++N YDP L + K L +GI +
Sbjct: 62 EALGSTLIIRKGSTE-EEILSLIEQLGITAVYWNICYDPDRLQFNQNMKMMLEDKGITCK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLL----PPKRINSGD 179
FN+ LL EPW + + F AF ++ +S P + P+ ++ +
Sbjct: 121 EFNSHLLLEPWMIKKKDNTEYKVFTPFYNAFQKQVISKPISKVQSIKWGSSLPESLSVTE 180
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+ P+ ES W P A K F + L YS+ R +
Sbjct: 181 LHLLPTIPWTSHIES----------IWDPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNA 230
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
S L+P+L FG++SVR ++H + K ++ VN F++ + RE+S Y+ ++
Sbjct: 231 HSMLAPYLSFGQISVRWMYHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYH 287
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
+P++ +PL + + F W +E W++G TGYP +DAGMRELW TG++H+R R+ V+
Sbjct: 288 YPFTVYKPLNKNFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVA 347
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KF
Sbjct: 348 SFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKF 407
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
D +GEY+R+W+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R
Sbjct: 408 DKDGEYIRKWVPELKDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALC 467
Query: 480 ALSEM 484
A M
Sbjct: 468 AYKSM 472
>gi|218898230|ref|YP_002446641.1| deoxyribodipyrimidine photolyase [Bacillus cereus G9842]
gi|218544312|gb|ACK96706.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
G9842]
Length = 476
Score = 315 bits (808), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 166/487 (34%), Positives = 271/487 (55%), Gaps = 30/487 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ V++ ++ + G ++WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDETFSIGSAAKWWLHHAVIDVKKQL 61
Query: 68 RSLGTSLVTK--RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LG++L+ + R+ + + SL+E + T +++N YDP L + + K L +GI
Sbjct: 62 EALGSTLIIRKGRTEEEILSLIEQLDITA---VYWNICYDPDRLQSNQKMKMMLEDKGII 118
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLL----PPKRINS 177
+ FN+ LL EPW + + F AF ++ + P + P ++
Sbjct: 119 CKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQSIKWGSSLPASLSV 178
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
++ P+ ES W P A K F + L YS+ R +
Sbjct: 179 SELHLLPTIPWTSHIES----------IWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQ 228
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
S L+P+L FG++SV+ ++H + K ++ VN F++ + RE+S Y+
Sbjct: 229 NAHSMLAPYLSFGQISVKLMYHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLL 285
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
+++P++ +PL + + F W +E + W++G TGYP +DAGMRELW TG++H+R R+
Sbjct: 286 YHYPFTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMA 345
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V+SF VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G
Sbjct: 346 VASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGE 405
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
KFD NGEY+R+W+PEL +P ++IH PW APE +LQ A I+LG+ YP P+V AA+ R
Sbjct: 406 KFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNTYPLPVVDHKAARERA 465
Query: 478 DEALSEM 484
A M
Sbjct: 466 LCAYKSM 472
>gi|196032015|ref|ZP_03099429.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus W]
gi|228928215|ref|ZP_04091256.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228946776|ref|ZP_04109081.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229122697|ref|ZP_04251907.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 95/8201]
gi|195994766|gb|EDX58720.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus W]
gi|228660748|gb|EEL16378.1| Deoxyribodipyrimidine photolyase [Bacillus cereus 95/8201]
gi|228812900|gb|EEM59216.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228831262|gb|EEM76858.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 476
Score = 315 bits (807), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 164/485 (33%), Positives = 266/485 (54%), Gaps = 26/485 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL ++G V+ V++ + + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSMGSASKWWLHHAIIDVKKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ ++ + + +L +V+ G T +++N YDP L + + K L +G+ +
Sbjct: 62 EALGSTLIIRKGS-TQEKILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEDKGMICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLLP----PKRINSGD 179
FN+ LL EPW + + F AF ++ + P + P ++ +
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVSLSVSE 180
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+ P+ ES W P A K F + L YS+ R +
Sbjct: 181 LHLLPTIPWTSHMES----------IWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNA 230
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
S L+P+L FG++SV+ ++H + K ++ VN F++ + RE+S Y+ ++
Sbjct: 231 HSMLAPYLSFGQISVKLIYHYLINKS---TESQCSLFEKQVNSFIRQLIWREFSYYLLYH 287
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
+P++ +PL + F W +E + W++G TGYP +DAGMRELW TG++H+R R+ V+
Sbjct: 288 YPFTAYKPLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVA 347
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KF
Sbjct: 348 SFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKF 407
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
D NGEY+R W+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R
Sbjct: 408 DKNGEYIREWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALC 467
Query: 480 ALSEM 484
A M
Sbjct: 468 AYKSM 472
>gi|423562452|ref|ZP_17538728.1| hypothetical protein II5_01856 [Bacillus cereus MSX-A1]
gi|401200617|gb|EJR07502.1| hypothetical protein II5_01856 [Bacillus cereus MSX-A1]
Length = 476
Score = 315 bits (807), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 166/487 (34%), Positives = 271/487 (55%), Gaps = 30/487 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ V++ ++ + G ++WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDETFSIGSAAKWWLHHAVIDVKKQL 61
Query: 68 RSLGTSLVTK--RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LG++L+ + R+ + + SL+E + T +++N YDP L + + K L +GI
Sbjct: 62 EALGSTLIIRKGRTEEEILSLIEQLDITA---VYWNICYDPDRLQSNQKMKMMLEDKGII 118
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLL----PPKRINS 177
+ FN+ LL EPW + + F AF ++ + P + P ++
Sbjct: 119 CKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPISKVQSIKWGSSLPASLSV 178
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
++ P+ ES W P A K F + L YS+ R +
Sbjct: 179 SELHLLPTIPWTSHIES----------IWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQ 228
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
S L+P+L FG++SV+ ++H + K ++ VN F++ + RE+S Y+
Sbjct: 229 NAHSMLAPYLSFGQISVKLMYHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLL 285
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
+++P++ +PL + + F W +E + W++G TGYP +DAGMRELW TG++H+R R+
Sbjct: 286 YHYPFTVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWKTGFMHNRTRMA 345
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V+SF VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G
Sbjct: 346 VASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGE 405
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
KFD NGEY+R+W+PEL +P ++IH PW APE +LQ A I+LG+ YP P+V AA+ R
Sbjct: 406 KFDKNGEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNTYPLPVVDHKAARERA 465
Query: 478 DEALSEM 484
A M
Sbjct: 466 LCAYKSM 472
>gi|218904303|ref|YP_002452137.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH820]
gi|218535120|gb|ACK87518.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
AH820]
Length = 476
Score = 315 bits (807), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 164/485 (33%), Positives = 265/485 (54%), Gaps = 26/485 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL ++G V+ V++ + + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEATQSGEVVPVYV----HDETFSMGSASKWWLHHAIIDVKKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ ++ + +L +V+ G T +++N YDP L + + K L +G+ +
Sbjct: 62 EALGSTLIIRKGSTQ-EEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEHKGMICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLLP----PKRINSGD 179
FN+ LL EPW + + F AF ++ + P + P ++ +
Sbjct: 121 EFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVSLSVSE 180
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+ P+ ES W P A K F + L YS+ R +
Sbjct: 181 LHLLPTIPWTSHMES----------IWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNA 230
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
S L+P+L FG++SV+ ++H + K ++ VN F++ + RE+S Y+ ++
Sbjct: 231 HSMLAPYLSFGQISVKLIYHYLINKS---TESQCSLFEKQVNSFIRQLIWREFSYYLLYH 287
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
+P++ +PL + F W +E + W++G TGYP +DAGMRELW TG++H+R R+ V+
Sbjct: 288 YPFTAYKPLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVA 347
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KF
Sbjct: 348 SFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKF 407
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
D NGEY+R W+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R
Sbjct: 408 DKNGEYIREWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALC 467
Query: 480 ALSEM 484
A M
Sbjct: 468 AYKSM 472
>gi|421477024|ref|ZP_15924877.1| FAD binding domain of DNA photolyase [Burkholderia multivorans CF2]
gi|400227339|gb|EJO57346.1| FAD binding domain of DNA photolyase [Burkholderia multivorans CF2]
Length = 476
Score = 315 bits (807), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 179/471 (38%), Positives = 268/471 (56%), Gaps = 24/471 (5%)
Query: 6 CSIVWFRRDLRVEDNPAL-AAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
+IV FRRDLR+ D+PAL AA R AV+ V++ P+E+ + PG SRWWL HSL+ LD
Sbjct: 3 VAIVLFRRDLRLSDHPALSAACARHDAVLPVYVHTPDEDAIWSPGAASRWWLHHSLTSLD 62
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+LR G L+ +S D ++ + +A A +++ Y+P ++ RD K L AQGI
Sbjct: 63 RALREQGGRLLVMQS-DPTIAVPALARAVDAQGVYWTRRYEPATIARDAALKSTLRAQGI 121
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFD--PDAPLLPPKRINSGDMSR 182
A S+ L EPW + GQP+ F FW K + D P P + + + D +
Sbjct: 122 AAHSYPGALWQEPWTLATDAGQPYRVFTPFWRKLRTRVSDCHPLPAARPRRWMTTDDSTA 181
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+ L+ + G LA AW PG + A + L F++ L EY R TS
Sbjct: 182 VEALGLLPRIRWDAG----LADAWRPGEAGAWERLEQFVDEALAEYGDARDAPARLGTSR 237
Query: 243 LSPHLHFGEVSVRKVFHLV--RIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
LS HLH+GE++ ++ + R+ + S G+ D + FL+ +G RE++ ++ ++
Sbjct: 238 LSAHLHYGEITPTQILRTLQERVARTS----GSVRPD--LEPFLRELGWREFAHHLLYHF 291
Query: 301 PYSHERPLLGHLKFFSWVVDEG-YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P++ + F+W D+G W+QGRTG PLVDAGMR+LW TGW+H+R+R+VV+
Sbjct: 292 PHTTDANFDARFDAFAWAPDDGEQLARWQQGRTGIPLVDAGMRQLWQTGWMHNRVRMVVA 351
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF K L+ WR G ++FWDTL+DADL ++ LGWQ+++G D + R+ NP + KF
Sbjct: 352 SFLTKNLRQHWRHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPYLQAAKF 411
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRI 470
DP+ Y++RWLPEL+RLP + +H PW P + L A G YP P+V +
Sbjct: 412 DPDAAYLKRWLPELSRLPADVLHRPWKHP-AALAACG------YPTPMVDL 455
>gi|398830139|ref|ZP_10588333.1| deoxyribodipyrimidine photolyase [Phyllobacterium sp. YR531]
gi|398215848|gb|EJN02409.1| deoxyribodipyrimidine photolyase [Phyllobacterium sp. YR531]
Length = 489
Score = 315 bits (807), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 181/484 (37%), Positives = 266/484 (54%), Gaps = 20/484 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYP-GRVSRWWLKHSLSHLDS 65
IV FR DLR+ DN AL A + G VI VFI E P G +WWL HSL L
Sbjct: 17 IVLFRHDLRLADNRALYAAAQTGKPVITVFIRDEETSKSVRPLGGARQWWLHHSLVSLTR 76
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SL L L+ ++ + + + ++ T A + +N YDP + D K L + I
Sbjct: 77 SLAKLDQKLILRKGA-TQAIVRNLLDDTKADMVLWNRRYDPAGIEVDTALKAELLERKIT 135
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRIN--SGDMSRC 183
SF+ LL+EP+ + G + F FW CL+ P +P P+ PK++ S D++
Sbjct: 136 AESFDGHLLHEPYKLKTGAGGYYRVFTPFWRACLNGP-EPRNPVPEPKKLRNWSSDITSD 194
Query: 184 PSD---TLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
D L + + KG + W+PG A + L+ F++ + Y R + T
Sbjct: 195 ELDDWALLPTKPDWAKGFD----ENWTPGEEGAREKLSDFLDDRVPSYKNGRDIPGTEAT 250
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSPHL GE++ +++H + + N G ++ FLK +G RE+S ++ FN+
Sbjct: 251 SRLSPHLAHGEITPFQIWHASKSPAIKDQNGG-------LDTFLKEVGWREFSYHLLFNN 303
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P H F W +F AW+QG TGYP+VDAGMR+LW TGW+H+R+R++ +S
Sbjct: 304 PKLHTENFNKSFDGFEWSRKVSHFDAWKQGNTGYPIVDAGMRQLWQTGWMHNRVRMIAAS 363
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F +K L + WR G ++FWDTL+DAD S+A WQ+++G+ D + R+ NP +G KFD
Sbjct: 364 FLIKHLLIDWRKGEEWFWDTLVDADPASNAASWQWVAGSGADAAPYFRVFNPIIQGEKFD 423
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
PNG YVR+++P L LP +++H PW AP + L+AA I+LG +YP PIV A+ R EA
Sbjct: 424 PNGRYVRQFIPILKDLPDKYLHKPWTAPAATLKAANIDLGKDYPEPIVEHGTARNRALEA 483
Query: 481 LSEM 484
S M
Sbjct: 484 YSRM 487
>gi|228959394|ref|ZP_04121085.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|423628269|ref|ZP_17604018.1| hypothetical protein IK5_01121 [Bacillus cereus VD154]
gi|228800294|gb|EEM47220.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|401270133|gb|EJR76158.1| hypothetical protein IK5_01121 [Bacillus cereus VD154]
Length = 476
Score = 315 bits (807), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 168/487 (34%), Positives = 271/487 (55%), Gaps = 30/487 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DN AL V++G V+ V+I ++ + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNLALFEAVQSGEVLPVYI----QDETFSIGSASKWWLHHAVIDVKKQL 61
Query: 68 RSLGTSLVTK--RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LG++L+ + R+ + + SL+E + T +++N YDP L + + K L +GI
Sbjct: 62 EALGSTLIIRKGRTEEEILSLIEQLDITA---VYWNICYDPDRLQSNQKMKMMLEDKGII 118
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLL----PPKRINS 177
+ FN+ LL EPW + + F AF ++ + PF + P ++
Sbjct: 119 CKEFNSHLLLEPWIIKKKDNTEYKVFTPFYNAFQKQVIPKPFSRVQSIKWGNSLPASLSV 178
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
++ P+ + + W P A K F + L+ YS+ R
Sbjct: 179 SELQLLPTIPW----------TSHMEVIWDPTEEGAYKTFKKFFSSKLVSYSEGRDFPGQ 228
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
S L+P+L FG++SV+ +FH + K ++ VN F++ + RE+S Y+
Sbjct: 229 NVHSMLAPYLSFGQISVKLMFHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLL 285
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
+++P++ +PL + F W +E + W++G+TGYP +DAGMRELW TG++H+R R+
Sbjct: 286 YHYPFTVYKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMA 345
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V+SF VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G
Sbjct: 346 VASFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGE 405
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
KFD NGEY+RRW+PEL +P ++IH PW APE +LQ + I+LG YP+PIV AA+ R
Sbjct: 406 KFDKNGEYIRRWVPELRDIPNKYIHKPWEAPEHILQKSNIKLGDTYPYPIVDHKAARERA 465
Query: 478 DEALSEM 484
A M
Sbjct: 466 LCAYKSM 472
>gi|294085609|ref|YP_003552369.1| deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292665184|gb|ADE40285.1| Deoxyribodipyrimidine photo-lyase [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 477
Score = 315 bits (806), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 179/472 (37%), Positives = 263/472 (55%), Gaps = 20/472 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
I WFR+DLR+ DNP+L A +AG V+ +FI + G + G R WL H+L+ L+ SL
Sbjct: 7 IHWFRQDLRLADNPSLVAAAQAGDVLPLFILDDDNAGDHKTGAAGRSWLHHALNALNMSL 66
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
L R D V + ++V GA+ +F+N Y+P + RD K LT I V
Sbjct: 67 DG---KLCVMRG-DPVDIIPKLVAKVGASGVFWNRCYEPWRIARDKMLKTNLTNNNIQVE 122
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEK-CLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
SFN LL+EPW V G P+ F F+ + CL+ P LP R ++ + P
Sbjct: 123 SFNGSLLWEPWTVLKGDGTPYRVFTPFYRRGCLNAA----PPRLPLARPDAMQLVADPES 178
Query: 187 TLVFEDES---EKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
++ + + + A +A W G + A L F+ G L Y R TS L
Sbjct: 179 SMSIDALNLLPDHDWGAKMASHWQIGEAAAMTRLHDFVEGGLNGYKDGRNFPARPHTSRL 238
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAG-DESVNLFLKSIGLREYSRYMSFNHPY 302
S HLH+GE+S ++ K+ ++AG D +++FL +G RE+S + ++ P+
Sbjct: 239 SAHLHWGEISPNMAWYAAIEKR-------DQAGFDNDIDVFLSELGWREFSHSLLYHFPH 291
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ L F W D+ +AW+QG+TGYP++DAGMRELW TG++H+R+R++V SF
Sbjct: 292 LPRQNLQPKFDSFPWQSDDNALRAWQQGKTGYPIIDAGMRELWETGYMHNRVRMIVGSFL 351
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L L W G +FWD L+DADL +++ GWQ+I+G D + R+ NP +G KFD +
Sbjct: 352 VKNLLLHWHHGEAWFWDCLVDADLANNSAGWQWIAGCGADAAPYFRVFNPITQGTKFDAD 411
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
G Y RR++PELA LP +++ PW AP LQAAGI LG +YP PIV + ++
Sbjct: 412 GSYTRRFVPELATLPNKYLFSPWEAPALELQAAGITLGKDYPNPIVDVKRSR 463
>gi|254283655|ref|ZP_04958623.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
gi|219679858|gb|EED36207.1| deoxyribodipyrimidine photo-lyase [gamma proteobacterium NOR51-B]
Length = 477
Score = 315 bits (806), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 178/474 (37%), Positives = 256/474 (54%), Gaps = 20/474 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+I WFR+DLR+ D P L A GAV+ VFI P + G S+WWL +SL L +S
Sbjct: 5 TIFWFRQDLRLTDLPGLCAAAERGAVLPVFIHDPSLGNEWSLGGASQWWLHYSLKSLQAS 64
Query: 67 LRSLGTSLVTKRST--DSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ + G L+ +R D +++L+E +GA+ ++ + Y P + + E LT +GI
Sbjct: 65 IEARGGELILRRGAPEDVLTALIE---ESGASAVYSSRQYQPWATSLETTLHETLTDEGI 121
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
+ + LL+EP V G P+ F FW CL + +P + G S
Sbjct: 122 DYKRYAGTLLFEPGSVLTGGGTPYKVFTPFWRACLQSEAPREPRSIPDVEWHVGVRSES- 180
Query: 185 SDTLVFEDESEKGSNALLARAW----SPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
ED + + SN A W SPG A + L F+ G + Y R A T
Sbjct: 181 -----VEDWNLRPSNPNWADGWESLWSPGEEGATRRLDDFLAGTVKHYGDGRDIPAEAYT 235
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSPHL FGE+S R+++H + +A + ES++ FL IG RE+ +
Sbjct: 236 SRLSPHLKFGEISPRQIWHAAQ-----YAKQRLPEAAESIDKFLSEIGWREFCYTLLDQF 290
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P +P F W + KAW++G TGYP+VDAGMRELW TG++H+R+R++ S
Sbjct: 291 PEMPNKPFKAQFDHFPWAGTQKALKAWQKGLTGYPIVDAGMRELWQTGFMHNRVRMITGS 350
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L WR G +FWD L+DAD+ S+A WQ+++G+ D + RI NP +G KFD
Sbjct: 351 FLTKHLLTHWRAGELWFWDCLVDADIASNACSWQWVAGSGADASPYFRIFNPIAQGEKFD 410
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
GEYVRR++PE+A LP ++IH PW AP S+L+ +GI LG YP PIV +A+
Sbjct: 411 KAGEYVRRYVPEIANLPDKYIHKPWEAPASILEQSGIVLGDTYPEPIVDHKSAR 464
>gi|229156755|ref|ZP_04284842.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 4342]
gi|228626675|gb|EEK83415.1| Deoxyribodipyrimidine photolyase [Bacillus cereus ATCC 4342]
Length = 476
Score = 315 bits (806), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 166/479 (34%), Positives = 266/479 (55%), Gaps = 14/479 (2%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
I+ F++D R+ DNPAL ++G V+ V++ ++ + G S+WWL H++ + L
Sbjct: 6 IMMFQKDFRLYDNPALFEAAQSGEVVPVYV----QDETFSIGSASKWWLHHAIIDVQKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ R ++ +L +++ T +++N YDP L + + K L +GI +
Sbjct: 62 EALGSTLII-RKGNTQEEILSLIEQLNITAVYWNSCYDPDRLKSNQKMKIVLEDKGIICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
FN+ LL EPW + + F F+ P P+ +RI G S P+
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPK-PISKVQRIKGG--SSLPASL 176
Query: 188 LVFEDESEKGS--NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
V E + + W+P A K F L YS+ R + S L+P
Sbjct: 177 SVSELHLLPTIPWTSHIESIWNPTEEGAYKTCKKFFFSKLASYSEGRDFPNENAHSMLAP 236
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
+L FG++SVR ++H + K ++ VN F++ + RE+S Y+ +++P++
Sbjct: 237 YLSFGQISVRWMYHYLINKSTE---RQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFTVY 293
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
+PL + + F W +E W++G TGYP +DAGMRELW TG++H+R R+ V+SF VK
Sbjct: 294 KPLNKNFEHFPWNKEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKH 353
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD +GEY
Sbjct: 354 LLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEY 413
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
+R+W+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R A M
Sbjct: 414 IRKWVPELRDMPNKYIHKPWEAPEHILQKANIKLGDTYPLPVVDHKAARERALCAYKSM 472
>gi|49478047|ref|YP_037258.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49329603|gb|AAT60249.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 476
Score = 314 bits (805), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 164/485 (33%), Positives = 265/485 (54%), Gaps = 26/485 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL ++G V+ V++ + + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSMGSASKWWLHHAIIDVKKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ ++ + +L +V+ G T +++N YDP L + + K L +G+ +
Sbjct: 62 EALGSTLIIRKGSTQ-EEILSLVEQLGITAVYWNICYDPDRLQFNQKMKMMLEHKGMICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLLP----PKRINSGD 179
FN+ LL EPW + + F AF ++ + P + P ++ +
Sbjct: 121 EFNSHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVSLSVSE 180
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+ P+ ES W P A K F + L YS+ R +
Sbjct: 181 LHLLPTIPWTSHMES----------IWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNA 230
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
S L+P+L FG++SV+ ++H + K ++ VN F++ + RE+S Y+ ++
Sbjct: 231 HSMLAPYLSFGQISVKLIYHYLINKS---TESQCSLFEKQVNSFIRQLIWREFSYYLLYH 287
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
+P++ +PL + F W +E + W++G TGYP +DAGMRELW TG++H+R R+ V+
Sbjct: 288 YPFTAYKPLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVA 347
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KF
Sbjct: 348 SFLVKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKF 407
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
D NGEY+R W+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R
Sbjct: 408 DKNGEYIREWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALC 467
Query: 480 ALSEM 484
A M
Sbjct: 468 AYKSM 472
>gi|254481485|ref|ZP_05094729.1| deoxyribodipyrimidine photolyase family protein [marine gamma
proteobacterium HTCC2148]
gi|214038113|gb|EEB78776.1| deoxyribodipyrimidine photolyase family protein [marine gamma
proteobacterium HTCC2148]
Length = 483
Score = 314 bits (805), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 175/466 (37%), Positives = 254/466 (54%), Gaps = 16/466 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I WFRRDLR+ D P L A + +G VI FI E + G SRWWL HSL L S
Sbjct: 8 IYWFRRDLRLTDLPGLHAALASGKPVIPCFILDDESTEEWAMGGASRWWLHHSLQALTKS 67
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
+ G +L+ +R D+ + L +V TGA ++ + LY+P + + E L G A+
Sbjct: 68 VAEQGGNLLVRRG-DTQAQLNALVNETGAAAVYCSELYEPDARELEKTLGEELAKSGAAL 126
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCL----SMPFDPDAPLLPPKRINSGDMSR 182
L + P +V + G PF F FW C+ SMP P ++
Sbjct: 127 HCLPGTLFFRPHEVRNGSGLPFKVFTPFWRHCMQRLPSMPL-PQKTTFTTNSFLQHSLTG 185
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+ +S + A W+PG + A + L F+ L +Y++ R +S
Sbjct: 186 LSCEQWQLLPDSPNWA-ADWHSYWTPGEAGATETLKQFVTNTLADYAQGRDFPARDASSR 244
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LS H H+GE+S R+ + V N+ + ++ + FL +G R+++ ++ F+ P+
Sbjct: 245 LSAHFHWGEISPRQAWAAV--------NKAPGSNEKDQHKFLSELGWRDFNHHLLFHFPH 296
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+RP W + FKAW +GRTGYP+VDAGMRELW TG++H+R+R++ +SF
Sbjct: 297 IADRPFKPSFSQMPWQGSDETFKAWCEGRTGYPIVDAGMRELWQTGFMHNRVRMICASFL 356
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
K L LPW+WG ++FWDTL+DADL +++ GWQ+++G D + RI NP +G KFD +
Sbjct: 357 TKHLLLPWQWGARWFWDTLVDADLANNSGGWQWVAGCGADASPWFRIFNPMLQGKKFDGD 416
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
GEYVRRWLPELA L + PW AP VL AG+ LGS+YPFPIV
Sbjct: 417 GEYVRRWLPELAGLSDRDLQIPWEAPPLVLADAGVTLGSDYPFPIV 462
>gi|346724379|ref|YP_004851048.1| photolyase [Xanthomonas axonopodis pv. citrumelo F1]
gi|346649126|gb|AEO41750.1| photolyase [Xanthomonas axonopodis pv. citrumelo F1]
Length = 475
Score = 314 bits (805), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 180/457 (39%), Positives = 268/457 (58%), Gaps = 20/457 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFRRDLR+EDNPAL A + AG I ++I AP EEG + PG SR W SL+ LD
Sbjct: 4 AIVWFRRDLRLEDNPALRAALDAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLAALDG 63
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LR+LG+ LV RS DS L EV+ TGA +++N Y+P + RD + K L +GI
Sbjct: 64 ALRALGSGLVI-RSGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRDLRERGIE 122
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS---MPFDPDAPLLPPKRINSGDMSR 182
V+S NA LL+EPW ++ QG P+ F FW L+ +P DAP P S
Sbjct: 123 VQSCNAALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAMDAPRRLPPLPASLKTDA 182
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS---AT 239
+ LV + ++G W PG + A + L FI+G L Y +NR + D
Sbjct: 183 LDTLQLVPGLQWDQG----FWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRPDRVG 238
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSPHLHFGE++ ++ + + + + G E ++ +++ +G R+++ ++ +
Sbjct: 239 TSQLSPHLHFGEIAPWRIASTLETHRTA------RNGAE-IDAYIRQLGWRDFAYHLLHH 291
Query: 300 HPYSHERPLLGHLKFFSW-VVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
P + + L F W VD +AW++GRTG P+VDAGMR+LW TGW+H+R+R++V
Sbjct: 292 FPDTTNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIV 351
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF K L++ W G ++FWDTL+DADL ++ LGWQ+++GT D + R+ NP + K
Sbjct: 352 ASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEK 411
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAA 455
FDP+ Y+ RW+PEL +L + PW P ++ + A
Sbjct: 412 FDPHATYITRWVPELGKLAVKERFAPWLHPLALARFA 448
>gi|21242230|ref|NP_641812.1| photolyase [Xanthomonas axonopodis pv. citri str. 306]
gi|21107653|gb|AAM36348.1| photolyase [Xanthomonas axonopodis pv. citri str. 306]
Length = 484
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 177/454 (38%), Positives = 265/454 (58%), Gaps = 17/454 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFRRDLR+EDNPAL A + AG I ++I AP EEG + PG SR W SL+ LD
Sbjct: 16 AIVWFRRDLRLEDNPALRAALDAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLAALDG 75
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LR+LG+ LV R +S L EV+ TGA +++N Y+P + RD + K L +GI
Sbjct: 76 ALRALGSGLVI-RVGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRDLRERGIE 134
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS---MPFDPDAPLLPPKRINSGDMSR 182
V+S N LL+EPW ++ QG P+ F FW L+ +P AP P S
Sbjct: 135 VQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAIGAPRSLPPLPASLKTDA 194
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+ LV + ++G W PG + A + L FI+G L Y +NR + D TS
Sbjct: 195 LDTLQLVPGLQWDQG----FWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRVGTSQ 250
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHLHFGE++ ++ + + + + + G E ++ +++ +G R+++ ++ + P
Sbjct: 251 LSPHLHFGEIAPWRIANTLETHRTA------RNGAE-IDAYIRQLGWRDFAYHLLHHFPD 303
Query: 303 SHERPLLGHLKFFSW-VVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ + L F W VD +AW++GRTG P+VDAGMR+LW TGW+H+R+R++V+SF
Sbjct: 304 TTNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASF 363
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L++ W G ++FWDTL+DADL ++ LGWQ+++GT D + R+ NP + KFDP
Sbjct: 364 LCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 423
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAA 455
Y+ RW+PEL +L + PW P S+ + A
Sbjct: 424 QAAYITRWVPELGKLAVKERFAPWLHPLSLARLA 457
>gi|407705549|ref|YP_006829134.1| hypothetical protein MC28_2313 [Bacillus thuringiensis MC28]
gi|407383234|gb|AFU13735.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis MC28]
Length = 476
Score = 314 bits (804), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 168/481 (34%), Positives = 266/481 (55%), Gaps = 18/481 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL ++G V+ V++ + + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSMGSASKWWLHHAVIDVKKQL 61
Query: 68 RSLGTSLVTK--RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LG++L+ + R+ + + SL+E ++ T +++N YDP L + + K L +GI
Sbjct: 62 EALGSTLIIRKGRTEEEIRSLIEQLRITA---VYWNICYDPDRLQSNQKMKMMLEDKGII 118
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
+ FN+ LL EPW + + F F+ P P+ + I G+ P+
Sbjct: 119 CKEFNSHLLLEPWIIKKKDNTEYKVFTPFY-NAFQKQIIPK-PISKVQSIKGGN--SLPA 174
Query: 186 DTLVFEDESEKGS--NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
V E + + W P A K F + L YS+ R + S L
Sbjct: 175 SLSVSELHLLPTIPWTSHIESIWEPTEEGAYKTCKKFFSSKLASYSEGRDFPNQNAHSML 234
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
+P+L FG++SVR ++H + K ++ VN F++ + RE+S Y+ +++P++
Sbjct: 235 APYLSFGQISVRLMYHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
+PL + F W ++ W++G TGYP +DAGMRELW TG++H+R R+ V+SF V
Sbjct: 292 VYKPLNKSFEHFPWNNEDELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD NG
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSE 483
EY+RRW+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R A
Sbjct: 412 EYIRRWVPELRDIPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKS 471
Query: 484 M 484
M
Sbjct: 472 M 472
>gi|118590290|ref|ZP_01547693.1| DNA photolyase [Stappia aggregata IAM 12614]
gi|118437262|gb|EAV43900.1| DNA photolyase [Stappia aggregata IAM 12614]
Length = 478
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 179/480 (37%), Positives = 267/480 (55%), Gaps = 30/480 (6%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAP-EEEGPYYP-GRVSRWWLKHSLSHL 63
++VWFR+DLR++DNPAL ++G V+ VFI P ++ G +P G SRWWL HSL L
Sbjct: 2 TTLVWFRQDLRIKDNPALFEAAKSGRVLPVFILEPADKTGETHPLGGASRWWLHHSLKAL 61
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L L D+ + EV K G +F+N Y+P ++ RD K +L G
Sbjct: 62 QQDLPGL-----VLLKGDARHLIPEVAKRAGVEAVFWNRCYEPYAIERDTDLKSSLKDDG 116
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
V+SF A LLYEPW++ G P+ ++ FW+ + D P P++++ D
Sbjct: 117 YEVKSFKASLLYEPWEIETQSGGPYKVYSPFWKAARQIEIDDALPA--PEKLDIADYDGG 174
Query: 184 PS----DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
D L + KG L W+PG + A + L +F+ L Y K R + D
Sbjct: 175 EELESFDLLPKKPNWAKGWEDL----WTPGEAGASERLGSFLEEGLKGYGKLRNRPDLPN 230
Query: 240 TSFLSPHLHFGEVSVRKVFHL---VRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
S LSPHLHFGE+S R+++H V ++ S ++G K FL I RE+S +
Sbjct: 231 VSRLSPHLHFGEISPRQIWHATQDVMDRRSSLGDDGMK--------FLSEIAWREFSHNL 282
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
++ P + W +G + W++G+TGYP+VDAGMRELW TG++H+R+R+
Sbjct: 283 LYHFPKLPSENWRSTFDEYPWKEPDGELEKWQKGQTGYPIVDAGMRELWQTGYMHNRVRM 342
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+ +SF +K L+L WR G +F DTL+DADL +++ GWQ+++G+ D + R+ NP +G
Sbjct: 343 IAASFLIKHLRLHWRHGEAWFRDTLVDADLANNSAGWQWVAGSGADAAPYFRVFNPITQG 402
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFDP+G Y+R+W+PEL L T ++ P++AP L+ A I LG YP P+V D A R
Sbjct: 403 EKFDPDGNYIRQWVPELRELDTRYLFAPFDAPAEALKKARITLGDTYPKPLV--DHASAR 460
>gi|380513692|ref|ZP_09857099.1| deoxyribodipyrimidine photo-lyase; photolyase [Xanthomonas sacchari
NCPPB 4393]
Length = 473
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 175/457 (38%), Positives = 266/457 (58%), Gaps = 23/457 (5%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAV-IAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFRRDLR+ D PAL A + AG + V++ +PE+EG + G SR WL+ SL+ LD+
Sbjct: 4 AIVWFRRDLRLHDQPALQAALDAGHTPVPVYLHSPEDEGAWAAGAASRSWLQRSLAALDA 63
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
LR+ G+ L+ R + ++L +V+ A +++N Y+P + RD R K L QG+
Sbjct: 64 QLRARGSRLIL-RQGPAEAALRQVIADCSAEAVYWNRRYEPATQPRDARLKRELREQGLE 122
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS---MPFDPDAPLL---PPKRINSGD 179
V S N+ LL+EPW + QG P+ F FW LS +P AP PP ++S
Sbjct: 123 VHSHNSALLFEPWQLATQQGGPYKVFTPFWRSALSHWQVPALQAAPKTLPPPPATLDSLP 182
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+ R L E ++G W PG + A +AL F++G L +Y R + D
Sbjct: 183 LERL---GLAPTLEWDRG----FWEVWQPGEAGAHEALDVFVDGALRDYLDGRDRPDQVG 235
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSPHLHFGE++ ++ + + A +++ +++ +G R+++ ++ +
Sbjct: 236 TSRLSPHLHFGEIAPWRIVATLERHR-------RAATAAAIDGYIRQLGWRDFAHHLLHH 288
Query: 300 HPYSHERPLLGHLKFFSWVV-DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
P + ER L + F W D AW++GRTG P+VDAG+RELW TGW+H+R+R++V
Sbjct: 289 FPDTPERNLNPRFERFRWATPDPAQLHAWQRGRTGVPIVDAGLRELWHTGWMHNRVRMIV 348
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+S+ K L++ W G ++FWDTL+DADL ++ LGWQ+++GT D + R+ NP + K
Sbjct: 349 ASYLCKHLRVHWSEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAQK 408
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAA 455
FDP GEY+ RW+PELA LP PW AP+ + QAA
Sbjct: 409 FDPKGEYIARWVPELAALPLADRFAPWQAPQRLAQAA 445
>gi|47528471|ref|YP_019820.1| deoxyribodipyrimidine photolyase [Bacillus anthracis str. 'Ames
Ancestor']
gi|47503619|gb|AAT32295.1| deoxyribodipyrimidine photolyase family protein [Bacillus anthracis
str. 'Ames Ancestor']
Length = 469
Score = 313 bits (803), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 162/482 (33%), Positives = 265/482 (54%), Gaps = 26/482 (5%)
Query: 11 FRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSL 70
F++D R+ DNPAL ++G V+ V++ + + G S+WWL H++ + L +L
Sbjct: 2 FQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSMGSASKWWLHHAIIDVKKQLEAL 57
Query: 71 GTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFN 130
G++L+ ++ + + +L +V+ G T +++N YDP L + + K L +G+ + FN
Sbjct: 58 GSTLIIRKGS-TQEEILSLVEQLGITAVYWNICYDPDRLQSNQKMKMMLEHKGMICKEFN 116
Query: 131 ADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLLP----PKRINSGDMSR 182
+ LL EPW + + F AF ++ + P + P ++ ++
Sbjct: 117 SHLLLEPWVIKKKDNTEYKVFTPFYNAFQKQVIHKPISKVQSIKGGNSLPVSLSVSELHL 176
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
P+ ES W P A K F + L YS+ R + S
Sbjct: 177 LPTIPWTSHMES----------IWEPTEEGAYKTWKEFFSSKLASYSEGRDFPNQNAHSM 226
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
L+P+L FG++SV+ ++H + K ++ VN F++ + RE+S Y+ +++P+
Sbjct: 227 LAPYLSFGQISVKLIYHYLINKS---TESQCSLFEKQVNSFIRQLIWREFSYYLLYHYPF 283
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ +PL + F W +E + W++G TGYP +DAGMRELW TG++H+R R+ V+SF
Sbjct: 284 TAYKPLNKSFEHFPWNNEEELLRVWQKGDTGYPFIDAGMRELWQTGFMHNRTRMAVASFL 343
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD N
Sbjct: 344 VKHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKN 403
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
GEY+R+W+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R A
Sbjct: 404 GEYIRKWVPELKDMPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYK 463
Query: 483 EM 484
M
Sbjct: 464 SM 465
>gi|254471109|ref|ZP_05084512.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062]
gi|211960251|gb|EEA95448.1| deoxyribodipyrimidine photo-lyase [Pseudovibrio sp. JE062]
Length = 471
Score = 313 bits (803), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 183/478 (38%), Positives = 264/478 (55%), Gaps = 24/478 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
I WFR+DLR+ DNPAL+A AG VI ++I +E G G ++ WL +SL L+ SL
Sbjct: 7 IHWFRQDLRLSDNPALSAACEAGEVIPLYILNDKEYGAREFGGATKNWLYYSLKALNESL 66
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+ G L+ R D + +++ TGA +F+N Y+P + D + K L GI +
Sbjct: 67 K--GQLLI--RRGDPAVIINSLIQETGAAGVFWNRCYEPWRVEHDAQLKTDLEENGITAK 122
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
SFN LL+EPW V G P+ F F+ K +P PL P ++ ++ ++
Sbjct: 123 SFNGSLLWEPWQVGKPDGSPYKVFTPFYRKGCLQAEEPRKPLPVPDQLRIHPLN---TEG 179
Query: 188 LVFEDE----SEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
+ DE ++ +A ++ W G A L F L +Y R TS L
Sbjct: 180 ALSIDELNLLEDRPWSAQVSSHWEHGEKAAQNRLYAFFEDGLSDYKDGRNFPALTHTSRL 239
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SPHLHFGE+S ++ W G+ ++ F +G RE+S + FN+P
Sbjct: 240 SPHLHFGEISPNQI----------WWVLGSHEETRDIDHFRSELGWREFSYSLLFNNPSL 289
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
+ L F W+ D+ AW++G+TG P+VDAGMRELW TG++H+R+R++V SF V
Sbjct: 290 PKSNLNEKFDNFPWLSDDQRLLAWQKGQTGVPIVDAGMRELWQTGYMHNRLRMIVGSFLV 349
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L L WR G ++FWD L+DADL +++ WQ+I+G D + RI NP +G KFD +G
Sbjct: 350 KNLLLDWRLGEEWFWDCLVDADLANNSASWQWIAGCGADAAPYFRIFNPILQGEKFDAHG 409
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
+Y RR+LPEL LP +++ PW AP+ VL+ AG+ LG NYP PIV D K R DEAL
Sbjct: 410 DYTRRFLPELKDLPDKYLFKPWEAPKDVLKGAGVTLGENYPLPIV--DLKKSR-DEAL 464
>gi|381170327|ref|ZP_09879485.1| DNA photolyase family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|390989717|ref|ZP_10260012.1| DNA photolyase family protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
gi|372555581|emb|CCF66987.1| DNA photolyase family protein [Xanthomonas axonopodis pv. punicae
str. LMG 859]
gi|380689197|emb|CCG35972.1| DNA photolyase family protein [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
Length = 472
Score = 313 bits (803), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 177/454 (38%), Positives = 264/454 (58%), Gaps = 17/454 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFRRDLR+EDNPAL A + AG I ++I AP EEG + PG SR W SL+ LD
Sbjct: 4 AIVWFRRDLRLEDNPALRAALDAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLAALDG 63
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LR+LG+ LV R +S L EV+ TGA +++N Y+P + RD + K L +GI
Sbjct: 64 ALRALGSGLVI-RVGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRDLRERGIE 122
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS---MPFDPDAPLLPPKRINSGDMSR 182
V+S N LL+EPW ++ QG P+ F FW L+ +P AP P S
Sbjct: 123 VQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAIGAPRSLPPLPASLKTDA 182
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+ LV + ++G W PG + A + L FI+G L Y +NR + D TS
Sbjct: 183 LDTLQLVPGLQWDQG----FWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRVGTSQ 238
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHLHFGE++ ++ + + + + G E ++ +++ +G R+++ ++ + P
Sbjct: 239 LSPHLHFGEIAPWRIASTLETHRTA------RNGAE-IDAYIRQLGWRDFAYHLLHHFPD 291
Query: 303 SHERPLLGHLKFFSW-VVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ + L F W VD +AW++GRTG P+VDAGMR+LW TGW+H+R+R++V+SF
Sbjct: 292 TTNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASF 351
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L++ W G ++FWDTL+DADL ++ LGWQ+++GT D + R+ NP + KFDP
Sbjct: 352 LCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 411
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAA 455
Y+ RW+PEL +L + PW P S+ + A
Sbjct: 412 QAAYITRWVPELGKLAVKERFAPWLHPLSLARLA 445
>gi|418515773|ref|ZP_13081952.1| photolyase [Xanthomonas axonopodis pv. malvacearum str. GSPB1386]
gi|418520050|ref|ZP_13086101.1| photolyase [Xanthomonas axonopodis pv. malvacearum str. GSPB2388]
gi|410704710|gb|EKQ63192.1| photolyase [Xanthomonas axonopodis pv. malvacearum str. GSPB2388]
gi|410707682|gb|EKQ66133.1| photolyase [Xanthomonas axonopodis pv. malvacearum str. GSPB1386]
Length = 472
Score = 313 bits (803), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 177/454 (38%), Positives = 264/454 (58%), Gaps = 17/454 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFRRDLR+EDNPAL A + AG I ++I AP EEG + PG SR W SL+ LD
Sbjct: 4 AIVWFRRDLRLEDNPALRAALDAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLAALDG 63
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LR+LG+ LV R +S L EV+ TGA +++N Y+P + RD + K L +GI
Sbjct: 64 ALRALGSGLVI-RVGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRDLRERGIE 122
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS---MPFDPDAPLLPPKRINSGDMSR 182
V+S N LL+EPW ++ QG P+ F FW L+ +P AP P S
Sbjct: 123 VQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAIGAPRSLPPLPASLKTDA 182
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+ LV + ++G W PG + A + L FI+G L Y +NR + D TS
Sbjct: 183 LDTLQLVPGLQWDQG----FWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRVGTSQ 238
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHLHFGE++ ++ + + + + G E ++ +++ +G R+++ ++ + P
Sbjct: 239 LSPHLHFGEIAPWRIASTLETHRTA------RNGAE-IDAYIRQLGWRDFAYHLLHHFPD 291
Query: 303 SHERPLLGHLKFFSW-VVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ + L F W VD +AW++GRTG P+VDAGMR+LW TGW+H+R+R++V+SF
Sbjct: 292 TTNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASF 351
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L++ W G ++FWDTL+DADL ++ LGWQ+++GT D + R+ NP + KFDP
Sbjct: 352 LCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 411
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAA 455
Y+ RW+PEL +L + PW P S+ + A
Sbjct: 412 QAAYITRWVPELGKLAVKERFAPWLHPLSLARLA 445
>gi|423465178|ref|ZP_17441946.1| hypothetical protein IEK_02365 [Bacillus cereus BAG6O-1]
gi|402418939|gb|EJV51227.1| hypothetical protein IEK_02365 [Bacillus cereus BAG6O-1]
Length = 476
Score = 313 bits (803), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 169/481 (35%), Positives = 266/481 (55%), Gaps = 18/481 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DN AL ++G V+ V++ + + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNLALFEAAQSGEVVPVYV----HDETFSMGSASKWWLHHAVIDVKKQL 61
Query: 68 RSLGTSLVTK--RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LG++L+ + R+ + + SL+E ++ T +++N YDP L + + K L +GI
Sbjct: 62 EALGSTLIIRKGRTEEEIRSLIEQLRITA---VYWNICYDPDRLQSNQKMKMMLEGKGII 118
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
+ FN+ LL EPW + + F F+ P P+ + I G+ P+
Sbjct: 119 CKEFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQIIPK-PISKVQSIKWGN--SLPA 174
Query: 186 DTLVFEDESEKGS--NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
V E + + W P A K F + L+ YS+ R D S L
Sbjct: 175 SLSVSELHLLPTIPWTSHMEAIWDPTEEGAYKTFKKFFSSKLVFYSEGRDFPDQNVHSML 234
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
+P+L FG++SVR ++H + K ++ VN F++ + RE+S Y+ +++P++
Sbjct: 235 APYLSFGQISVRLMYHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPFT 291
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
+PL + F W +E W++G TGYP +DAGMRELW TG++H+R R+ V+SF V
Sbjct: 292 VYKPLNKSFEHFPWNNEEELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLV 351
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD NG
Sbjct: 352 KHLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNG 411
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSE 483
EY+RRW+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R A
Sbjct: 412 EYIRRWVPELRDIPNKYIHKPWEAPEHILQKANIQLGHTYPLPVVDHKAARERALCAYKS 471
Query: 484 M 484
M
Sbjct: 472 M 472
>gi|261047492|gb|ACX54505.1| cryptochrome 1 [Capsella bursa-pastoris]
Length = 166
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 156/166 (93%), Positives = 161/166 (96%)
Query: 268 WANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAW 327
WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHERPLLGHLKFF W VDE YFKAW
Sbjct: 1 WANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAW 60
Query: 328 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 387
RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE
Sbjct: 61 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120
Query: 388 SDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPEL 433
SDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVRRWLPEL
Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPEL 166
>gi|418296029|ref|ZP_12907873.1| deoxyribodipyrimidine photo-lyase [Agrobacterium tumefaciens
CCNWGS0286]
gi|355539461|gb|EHH08699.1| deoxyribodipyrimidine photo-lyase [Agrobacterium tumefaciens
CCNWGS0286]
Length = 479
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 191/490 (38%), Positives = 267/490 (54%), Gaps = 34/490 (6%)
Query: 7 SIVWFRRDLRVEDNPALAAGV-RAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFR+DLR+ DN AL A V G VI V++ + GP G WWL HSL+ L +
Sbjct: 8 AIVWFRKDLRLSDNLALLAAVEHGGPVIPVYV-REKSCGPL--GGAQEWWLHHSLACLSA 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L G+ LV S D+ +L +++ TGA +F+N YDP + D K+ L G+
Sbjct: 65 ALEKTGSRLVLA-SGDAGETLRQLISETGADAVFWNRRYDPAGMATDKALKQKLRDDGLT 123
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
VRSF+ LL+EP + G P+ + FW + L +P AP PK + + P
Sbjct: 124 VRSFSGHLLHEPSRLQTKSGGPYRVYTPFW-RALEGGEEPHAPADAPKSL------KAPK 176
Query: 186 DTLVFEDESEKGSNALL-----------ARAWSPGWSNADKALTTFINGPLIEYSKNRRK 234
L ESEK S+ L + W+PG A + L FI+G L Y + R
Sbjct: 177 AWL----ESEKLSDWKLLPTKPDWAKHFSDIWAPGEGGAQEKLDDFIDGALKGYEEGRDF 232
Query: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSR 294
TS LSPHL GE+S V+H + ++ F K I RE+
Sbjct: 233 PAKDATSMLSPHLALGEISPATVWHATK-------GLSRHIASNDISRFRKEIVWREFCY 285
Query: 295 YMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
++ F+ P E+ F W DE FKAW +G TGYP+VDAGMR+LW G +H+R+
Sbjct: 286 HLLFHFPGLDEKNWNESFDAFGWRDDETSFKAWTRGMTGYPIVDAGMRQLWKHGTMHNRV 345
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R++V+SF +K L + WR G K+F DTL+DAD S+A WQ+++G+ D F RI NP
Sbjct: 346 RMIVASFLIKHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPIL 405
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
+G KFD +G YVRR++PEL +L ++IH P+ AP+ VL+ AGIELG YP PIV A+
Sbjct: 406 QGEKFDADGNYVRRFVPELEKLDRKYIHKPFEAPKEVLKKAGIELGKTYPLPIVDHGKAR 465
Query: 475 CRLDEALSEM 484
R A +E+
Sbjct: 466 ERALAAYAEV 475
>gi|254514439|ref|ZP_05126500.1| DNA photolyase [gamma proteobacterium NOR5-3]
gi|219676682|gb|EED33047.1| DNA photolyase [gamma proteobacterium NOR5-3]
Length = 482
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 173/464 (37%), Positives = 260/464 (56%), Gaps = 14/464 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
++WFR+DLR+ D PAL A R G V+ ++I + G + PG SRWWL HSL+ L
Sbjct: 6 VLWFRQDLRINDLPALQAATRDGQKVLPIYILDEDAPGDWSPGGASRWWLHHSLTALAQD 65
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
+ LG +L+ ++ ++S L +V +A+GA ++ + Y+P + + +AL + I+
Sbjct: 66 IDHLGGTLIFRKGK-TLSILRDVCEASGARAIYCSRRYEPWAGQEEQTLYKALDSDNISF 124
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
+ F LL+EP V G PF F FW C + P P ++ + SD
Sbjct: 125 KRFPGSLLHEPGSVLTQGGGPFKVFTPFWRACRRN----EVP-QPAEKPSVAWAEGIQSD 179
Query: 187 TLVFEDESEKGSN--ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
TL + + A W PG + A L F++ + Y+ R TS +S
Sbjct: 180 TLDAWKLLPRDPDWAASWNEFWQPGENGAQARLHAFLDDTVSRYADERDLPSVDATSRMS 239
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
HLH GE+S R+++ + K++ D ++N F +G RE+S ++ P+
Sbjct: 240 AHLHHGEISPRQIWAMCEQKKLE-----QPHSDTAINKFQAELGWREFSYHLLHFFPHLP 294
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
E P + F W +E Y +AW++G+TGYP+VDAGMRELWATG +H+R+R+VV+SF K
Sbjct: 295 ETPFKENFSGFPWQANETYLQAWQRGQTGYPIVDAGMRELWATGIMHNRVRMVVASFLCK 354
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L WR G +FWDTL+DADL S+ WQ+++G+ D + RI NP +G KFD G+
Sbjct: 355 HLLQHWRCGEDWFWDTLVDADLASNGCSWQWVAGSGADAAPYFRIFNPVTQGEKFDKQGD 414
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
YVRRW+PE+A L +++H PW AP VL AG+ LG++YP PIV
Sbjct: 415 YVRRWVPEIAALSNKYLHKPWEAPAEVLSQAGVTLGADYPEPIV 458
>gi|91977566|ref|YP_570225.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris BisB5]
gi|91684022|gb|ABE40324.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
palustris BisB5]
Length = 487
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 187/472 (39%), Positives = 266/472 (56%), Gaps = 24/472 (5%)
Query: 8 IVWFRRDLRVEDNPAL-AAGVRAGAVIAVFIWAPEEEGPYYP-----GRVSRWWLKHSLS 61
IVWFR DLR+ D+PAL A G +I ++++ + P G SRWWL SL
Sbjct: 10 IVWFRDDLRLSDHPALHQAAASGGPLICIYVFDEDSAQLRSPQARPLGGASRWWLAQSLR 69
Query: 62 HLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHL-YDPLSLVRDHRAKEALT 120
L +SL G L+ +R + + + E+ + A+ + +N + P V D A EAL+
Sbjct: 70 ALAASLEKRGARLILRRGP-AAAIIAELARQVDASAVHWNEIEIAPHRAVADDLA-EALS 127
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
GI DLL P +V +G+ F FW + L + DP L PK +++
Sbjct: 128 VAGIDHHRHRGDLLASPAEVRTKEGRGLRVFTPFWRRVLGL-GDPPKLLPAPKTLSA--- 183
Query: 181 SRCPS----DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
++ PS D+ + E +E L +W+PG A LT F++ L Y++ R + D
Sbjct: 184 AQGPSGDQLDSWMLE-PTEPDWAGGLRESWTPGEGAAQDNLTAFLDA-LPGYTEGRDRPD 241
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
A TS LSPHL FGE+S R+V++ R A AGD ++ FL +G RE+ R++
Sbjct: 242 CAATSRLSPHLRFGEISPRQVWYAARFAA---AERPAIAGD--IDKFLSELGWREFCRHL 296
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
+HP ER L F W+ D AW++G TGYP+VDAGMRELW TG +H+R+R+
Sbjct: 297 LHDHPDLAERNLQASFDAFPWITDAAALHAWQRGCTGYPIVDAGMRELWHTGVMHNRVRM 356
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
VV+SF VK L + WR G ++FWDTL+DAD S+ WQ+++G+ D + R+ NP +G
Sbjct: 357 VVASFLVKHLLIDWRCGEQWFWDTLVDADAGSNPANWQWVAGSGADAAPYFRVFNPILQG 416
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
KFDP G+YVRRW+PELA LP ++IH PW A L AAG+ LG NYP PI+
Sbjct: 417 EKFDPAGDYVRRWVPELASLPAKFIHQPWTATPFELAAAGVTLGGNYPEPII 468
>gi|228908916|ref|ZP_04072746.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200]
gi|228850638|gb|EEM95462.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis IBL 200]
Length = 476
Score = 313 bits (801), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 167/482 (34%), Positives = 269/482 (55%), Gaps = 20/482 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ V++ ++ + G S+WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYV----QDEAFSMGEASKWWLHHAVIDVKKQL 61
Query: 68 RSLGTSLVTK--RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LG++L+ + R+ +++ SL+E + T +++N YDP L + + K L +GI
Sbjct: 62 EALGSTLIIRKGRTEEAILSLIEKLDITA---VYWNICYDPDRLKSNQKMKMMLEDKGII 118
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM-SRCP 184
+ FN+ LL E W + + F F+ F P ++ S S P
Sbjct: 119 CKEFNSHLLLESWIIKKKDNTEYKVFTPFYN-----AFQKQVIPKPVSKVQSIKWGSSLP 173
Query: 185 SDTLVFEDESEKGS--NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+ V E + + W P A K F + L YS+ R + S
Sbjct: 174 ASLSVSELHLLPTIPWTSHIESMWEPTEEGAYKTFKKFFSSKLASYSEGRDFPNQNAHSM 233
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
L+P+L FG++SV+ ++H + K ++ VN F++ + RE+S Y+ +++P+
Sbjct: 234 LAPYLSFGQISVKLMYHYLINKS---TERQCSLFEKQVNSFIRQLIWREFSYYLLYHYPF 290
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ +PL + + F W +E + W++G TGYP +DAGMRELW TG++H+R R+ V+SF
Sbjct: 291 AVYKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRTRMAVASFL 350
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD N
Sbjct: 351 VKHLLIPWQEGAKWFMDTLLDADIANNIMGWQWVAGSGADASPYFRIFNPITQGEKFDKN 410
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
GEY+R+W+PEL +P ++IH PW APE +LQ A I+LG+ YP P+V AA+ R A
Sbjct: 411 GEYIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGNAYPLPVVDHKAARERALCAYK 470
Query: 483 EM 484
M
Sbjct: 471 SM 472
>gi|254418176|ref|ZP_05031900.1| deoxyribodipyrimidine photolyase family [Brevundimonas sp. BAL3]
gi|196184353|gb|EDX79329.1| deoxyribodipyrimidine photolyase family [Brevundimonas sp. BAL3]
Length = 488
Score = 312 bits (800), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 192/482 (39%), Positives = 269/482 (55%), Gaps = 20/482 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
++WFRRDLR+ DNPAL V G ++ VFI + + P G S WWL SL LD S
Sbjct: 12 VLWFRRDLRLNDNPALYHAVATGRPILPVFILDRDPDRPA--GAASLWWLDKSLRALDDS 69
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
LR G+ L+ +R DS++ L +++ TGA LF N L++P + RD L + G+
Sbjct: 70 LRERGSRLILRRG-DSLTQLQSLIEDTGADALFMNRLFEPAAFARDAEIAHELKSAGVDC 128
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS- 185
R FN LL P V + P+ F F K L +P P P+RI + D + S
Sbjct: 129 RGFNGSLLARPGAVLNGSDAPYKVFTPF-MKALLATAEPPPPTTAPRRIATPDAVQTESI 187
Query: 186 -DTLVFEDESE--KGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
D + S+ KG + W+PG + AD AL+ F+ L Y+K R TTS
Sbjct: 188 DDWRLHPTRSDWSKGFD------WTPGEAGADAALSDFLARGLKTYAKGRDHPALPTTSR 241
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHLH+GE+S + R + A +A + F+ +G R++S ++ + P
Sbjct: 242 LSPHLHWGEISPWRAAQRARGAADAGAVPAGEA-----DKFVAELGWRDFSAHLLHHFPT 296
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+R + W D +AW++GRTGYPLVDAGMR+LW TGW+H+R+R+VV+SF
Sbjct: 297 ITDRAFRPEYESMPWRGDPEGLEAWKRGRTGYPLVDAGMRQLWTTGWMHNRVRMVVASFL 356
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L + WR G +FWDTL+DADL S+ WQ+++G+ D + RI NP +G KFD
Sbjct: 357 VKHLLIDWREGEAWFWDTLVDADLASNVQNWQWVAGSGADAAPYFRIFNPITQGEKFDAT 416
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
G YVRRW+PEL RLP W+ PW AP VL+ AG+ LG +YP PI+ A+ R +AL
Sbjct: 417 GGYVRRWVPELRRLPDRWLPSPWTAPPEVLRDAGVRLGKDYPHPILDHAQARARALDALK 476
Query: 483 EM 484
+
Sbjct: 477 TV 478
>gi|119503382|ref|ZP_01625466.1| DNA photolyase [marine gamma proteobacterium HTCC2080]
gi|119461028|gb|EAW42119.1| DNA photolyase [marine gamma proteobacterium HTCC2080]
Length = 481
Score = 312 bits (800), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 183/487 (37%), Positives = 264/487 (54%), Gaps = 11/487 (2%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S+ WFR DLR+ D P L A +AG VI VF+W G + G S+WWL HSL L +
Sbjct: 4 ASLYWFRHDLRLADLPGLIAAAKAGTVIPVFVWDEALGGDWSLGGASQWWLHHSLQSLAA 63
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L LG+ L+ +R S + ++++ TGA +F + Y P + ++ K + G
Sbjct: 64 DLNGLGSRLILRRGETS-KVIAKLLEETGAQNVFASRQYQPWAADTENAVKAVTESAGGD 122
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
+ + LL+EP ++ G PF F FW L P P + + S D S
Sbjct: 123 FKRYPGTLLFEPENIRTGGGTPFKVFTPFWRAALKQPAPPQPQPV--PLLTSPD-EWPQS 179
Query: 186 DTLVFEDESEKGSNALLA--RAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
D L K N WSPG + A AL TF++ + Y R TS L
Sbjct: 180 DALNTWQLCPKTPNWATGWEELWSPGEAGASGALRTFLDSHVDSYGNGRDFPAQPNTSRL 239
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SP+L FGE+S R+++ + + S +EG+ S++ FL IG RE+ ++ P
Sbjct: 240 SPYLKFGEISPRQIWWTAQNTKQSNPDEGS-----SIDKFLSEIGWREFCNHLVAQFPAM 294
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
++ ++F W + AW+QG TGYP++DAGMRELW TG++H+R+R+VV+SF
Sbjct: 295 PDKAWNPKFEYFPWQSHQRNLSAWQQGNTGYPIIDAGMRELWQTGFMHNRVRMVVASFLT 354
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WR G ++FWD LLDADL S+A WQ++ G+ D + RI NP +G KFD G
Sbjct: 355 KHLLMHWRVGEQWFWDCLLDADLASNACSWQWVGGSGADASPYFRIFNPIAQGEKFDKAG 414
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSE 483
Y RRW+PELA LP ++++ PW APE L+AAG+ELG+ YP PIV A+ EA +
Sbjct: 415 MYTRRWVPELAELPDKYLYKPWEAPELTLKAAGVELGTTYPNPIVDHRTARESALEAYAT 474
Query: 484 MWQQEAA 490
+ +AA
Sbjct: 475 LKNIDAA 481
>gi|384084820|ref|ZP_09995995.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus thiooxidans
ATCC 19377]
Length = 484
Score = 312 bits (799), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 171/466 (36%), Positives = 261/466 (56%), Gaps = 22/466 (4%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVW RRDLR+ D+PAL + G VI ++I +E+ G WW HSL L
Sbjct: 3 ITIVWLRRDLRLADHPALWEASQEGVVIPLYILDADEQA----GTAELWWRHHSLQQLQE 58
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SL G L+ +R + L E++ T A +F+N YDP + +D K L +QGIA
Sbjct: 59 SLARYGLPLILRRGK-PLQILQEIIAETSARAVFWNRRYDPAGIAQDTAIKAELRSQGIA 117
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS-------MPFDPDAPLLPPKRINSG 178
VRSF D L EPW ++ +P+ F FW+ L+ +P +PD LP ++
Sbjct: 118 VRSFTGDCLVEPW-LHHHDEKPYKVFTPFWKSLLARFSIVPALP-EPDFSALP-HQLTQD 174
Query: 179 DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
++ ++ + + + W+PG + A L F++ L+ YS+ R
Sbjct: 175 LVTETLAEWHLLPQKPNWAKR--FSEFWAPGETGAKNRLQQFLDESLVNYSEGRNFPAQN 232
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
+ S LSPHL GE+S R+++ R + + DE + FL+ +G RE+S ++ F
Sbjct: 233 SVSRLSPHLSHGEISPRQIWQETRFH----LRQHPELTDEGEH-FLRELGWREFSWHLLF 287
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
+ P + PL F W D + W+ G+TGYP+VDAGMRELW +GW+H+R+R++
Sbjct: 288 HFPQLPDTPLRPEFADFPWQKDTLLLERWQSGQTGYPIVDAGMRELWQSGWMHNRVRMIC 347
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF +K L + W+ G +FWDTL+DADL +++ WQ+++G+ D + RI NP +G K
Sbjct: 348 ASFLIKDLLVSWQDGEAWFWDTLVDADLANNSASWQWVAGSGADAAPYFRIFNPVLQGEK 407
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
FDP G+Y+RRW+PEL+ LP +IH PW A + +L+ AG+ LG NYP
Sbjct: 408 FDPEGKYLRRWIPELSALPDRFIHQPWAADQDLLKKAGVVLGGNYP 453
>gi|294626579|ref|ZP_06705177.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|292599146|gb|EFF43285.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
Length = 484
Score = 312 bits (799), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 180/459 (39%), Positives = 270/459 (58%), Gaps = 27/459 (5%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFRRDLR+EDNPAL A + AG I ++I AP EEG + PG SR W SL+ LD
Sbjct: 16 AIVWFRRDLRLEDNPALRAALDAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLAALDG 75
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LR+LG+ LV R +S L EV+ TGA +++N Y+P + RD + K L +GI
Sbjct: 76 ALRALGSGLVI-RVGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRDLRERGIE 134
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS---MPFDPDAPL-LPPK----RINS 177
V+S N LL+EPW ++ QG P+ F FW L+ +P AP LPP + ++
Sbjct: 135 VQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAMGAPRSLPPLPASLKTDA 194
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
DM + LV + ++G W PG + A + L FI+G L Y +NR + D
Sbjct: 195 LDMLQ-----LVPGVQWDQG----FWEHWRPGEAGAHEMLEIFIDGALSGYRENRDRPDR 245
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
TS LSPHLHFGE++ ++ + + + + G E ++ +++ +G R+++ ++
Sbjct: 246 VGTSQLSPHLHFGEIAPWRIASTLETHRTA------RNGAE-IDGYIRQLGWRDFAYHLL 298
Query: 298 FNHPYSHERPLLGHLKFFSW-VVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
+ P + + L F W VD +AW++GRTG P+VDAGMR+LW TGW+H+R+R+
Sbjct: 299 HHFPDTTNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRM 358
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+V+SF K L++ W G ++FWDTL+DADL ++ LGWQ+++GT D + R+ NP +
Sbjct: 359 IVASFLCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQA 418
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAA 455
KFDP Y+ RW+PEL +L + PW P S+ + A
Sbjct: 419 EKFDPQAAYITRWVPELGKLAVKERFAPWLHPLSLARVA 457
>gi|333893079|ref|YP_004466954.1| deoxyribodipyrimidine photo-lyase [Alteromonas sp. SN2]
gi|332993097|gb|AEF03152.1| deoxyribodipyrimidine photo-lyase [Alteromonas sp. SN2]
Length = 474
Score = 312 bits (799), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 179/487 (36%), Positives = 261/487 (53%), Gaps = 26/487 (5%)
Query: 9 VWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLR 68
+WFR+DLRV+DNPAL A G +I ++I+ G S WWL HSL+ L+ L
Sbjct: 1 MWFRQDLRVKDNPALNAACDEGKIIPIYIYDDNATDGRALGGASNWWLHHSLNSLNDRLN 60
Query: 69 SLGTSLVTKRSTDS-VSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
G V K + + +L+E +A G +++N Y+P + RD K+ L
Sbjct: 61 --GHLKVFKGDPKALIPALMEAYEAKG---IYWNRCYEPWQINRDKAIKKQLLDNDYEAH 115
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEK-CLSMPFDPDAPLLPPKRINSGDMS----- 181
S N LL+EP V G P+ F ++ K CL++ P P PP RI D+
Sbjct: 116 SSNGSLLWEPMKVLKKDGTPYRVFTPYYRKGCLNVE-PPRYPQAPPARITYADVDDSKIT 174
Query: 182 ----RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
C D L G ++ W PG A L FI +Y R
Sbjct: 175 KANHSCNIDDLNLL--PSLGWDSDFKNHWKPGEDGAADNLQYFIQHAARKYKDARDIPSM 232
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
TS LSPHLHFGEVS +V++ ++ + + D+S++ +L +G RE+S Y+
Sbjct: 233 NGTSHLSPHLHFGEVSPNQVWYAIK-------DRFETSEDKSIDTYLSELGWREFSYYLL 285
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
++ P + F+W D KAW+ G+TG P+VDAGMRELW TG++H+R+R++
Sbjct: 286 YHFPTIPTKNFNDKFDKFNWRSDAKSLKAWQTGQTGIPIVDAGMRELWQTGYMHNRVRMI 345
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V SF VK L + W+ G ++FWD L+DADL S+ GWQ+++GT D + RI NP +G
Sbjct: 346 VGSFLVKNLLISWQEGERWFWDCLVDADLASNTAGWQWVAGTGADAAPYFRIFNPLLQGE 405
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
KFD G+YVR++ PELA LP ++IH PW+AP + + AG+ LG YP PIV + A++ R
Sbjct: 406 KFDKQGKYVRKYCPELADLPDKYIHKPWDAPPVIAKDAGVHLGDTYPKPIVDLKASRQRA 465
Query: 478 DEALSEM 484
+A +
Sbjct: 466 LDAFQAL 472
>gi|119477185|ref|ZP_01617421.1| putative photolyase [marine gamma proteobacterium HTCC2143]
gi|119449548|gb|EAW30786.1| putative photolyase [marine gamma proteobacterium HTCC2143]
Length = 477
Score = 311 bits (798), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 181/484 (37%), Positives = 265/484 (54%), Gaps = 29/484 (5%)
Query: 9 VWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLR 68
+WFR+DLR+ DNPAL A G +I V+I + G + G SRWWL +L+ L++SL+
Sbjct: 1 MWFRQDLRLADNPALCAACERGEIIPVYILDDQGAGQWKMGGASRWWLHFALADLNASLK 60
Query: 69 SLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRS 128
+ D+++ L ++ TGA + +N Y+P + RD K +L G+ V+S
Sbjct: 61 QC----LQIYQGDALTILGDLADQTGAATVVWNRCYEPWRIGRDATIKTSLKESGLDVQS 116
Query: 129 FNADLLYEPWDVNDAQGQPFATFAAFWEK-CLSMPFDPDAPLLPPKR----INSGDMSRC 183
FN LL+EPW V G P+ F ++ + CLS P P+ PPK ++SGD
Sbjct: 117 FNGSLLWEPWQVLKKDGTPYKVFTPYYRRGCLST-VAPRRPMDPPKTLKVFVDSGDSLEL 175
Query: 184 PSDTLVFE---DESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
+ L+ + DES K W + A L F+ L +Y + R
Sbjct: 176 DNLNLLPKIAWDESMKA-------CWDISEAAAHARLDEFVMNELQDYREGRNFPAKQNV 228
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP+LHFG++S ++ NE +S++ F+ +G RE+S Y+ ++
Sbjct: 229 SRLSPYLHFGQISPNSAWYRAAEAGAFINNE------QSLDTFMSELGWREFSYYLLYHW 282
Query: 301 PYSHERPLLGHLKFFSWV--VDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
P L F W DE AW+QG+TGYPLVDAGMREL++TG++H+R+R+VV
Sbjct: 283 PKLPTENLQTRFDLFPWANNTDED-LSAWQQGKTGYPLVDAGMRELYSTGYMHNRVRMVV 341
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
SF VK L + W G ++FWD L+DADL S++ WQ+I+G D F RI NP + K
Sbjct: 342 GSFLVKNLLIHWHRGEEWFWDCLVDADLASNSASWQWIAGCGADAAPFFRIFNPITQSEK 401
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FD G Y+RR++PEL +P ++IH PW AP VL AG+ +G NYP P+V I ++ R
Sbjct: 402 FDKQGSYIRRYVPELKDMPEKYIHAPWLAPAEVLAVAGVNIGINYPEPVVDIKVSRARAL 461
Query: 479 EALS 482
EA +
Sbjct: 462 EAFA 465
>gi|161521234|ref|YP_001584661.1| deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC
17616]
gi|189352592|ref|YP_001948219.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC
17616]
gi|160345284|gb|ABX18369.1| Deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC
17616]
gi|189336614|dbj|BAG45683.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC
17616]
Length = 476
Score = 311 bits (798), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 178/471 (37%), Positives = 266/471 (56%), Gaps = 24/471 (5%)
Query: 6 CSIVWFRRDLRVEDNPAL-AAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
+IV FRRDLR+ D+PAL AA R AV+ V++ P+E+ + PG SRWWL HSL+ LD
Sbjct: 3 VAIVLFRRDLRLSDHPALSAACARHDAVLPVYVHTPDEDAIWSPGAASRWWLHHSLTSLD 62
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+LR G L+ +S D ++ + +A A +++ Y+P ++ RD K L AQGI
Sbjct: 63 RALREQGGRLLAMQS-DPTIAVPALARAVDAQGVYWTRRYEPAAIARDAALKSTLRAQGI 121
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFD--PDAPLLPPKRINSGDMSR 182
A S+ L EPW + GQP+ F FW K + D P P + + + D +
Sbjct: 122 AAHSYPGALWQEPWTLATDAGQPYRVFTPFWRKLRTSLSDCHPLPAARPRRWMTTDDSTA 181
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+ L+ + G LA AW PG A + L F++ L EY R TS
Sbjct: 182 VEALGLLPRIRWDAG----LADAWRPGEGGAWERLEQFVDEALAEYGDARDAPARLGTSR 237
Query: 243 LSPHLHFGEVSVRKVFHLV--RIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
LS HLH+GE++ ++ + R+ + S G+ D + FL+ +G RE++ ++ ++
Sbjct: 238 LSAHLHYGEITPTQILRTLQERVARTS----GSVRPD--LEPFLRELGWREFAHHLLYHF 291
Query: 301 PYSHERPLLGHLKFFSWVVDEG-YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P++ + F+W D+G W+QGRTG PLVDAGMR+LW TGW+H+R+R+VV+
Sbjct: 292 PHTTDANFDARFDAFAWAPDDGEQLARWQQGRTGIPLVDAGMRQLWQTGWMHNRVRMVVA 351
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF K L+ WR G ++FWDTL+DADL ++ LGWQ+++G D + R+ NP + KF
Sbjct: 352 SFLTKNLRQHWRHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPYLQAAKF 411
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRI 470
DP+ Y++RWLPEL+RLP + +H PW + L A G YP P+V +
Sbjct: 412 DPDAAYLKRWLPELSRLPADVLHRPWKH-SAALAACG------YPTPMVDL 455
>gi|47564301|ref|ZP_00235346.1| deoxyribodipyrimidine photolyase classI [Bacillus cereus G9241]
gi|47558453|gb|EAL16776.1| deoxyribodipyrimidine photolyase classI [Bacillus cereus G9241]
Length = 476
Score = 311 bits (798), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 162/480 (33%), Positives = 266/480 (55%), Gaps = 16/480 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
I+ F++D R+ DNPAL ++G V+ V++ ++ + G ++WWL H++ + L
Sbjct: 6 IMMFQKDFRLYDNPALFEAAQSGEVVPVYV----QDETFSIGSAAKWWLHHAIIDVQKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
++LG + + R + +L +++ T +++N Y+P L + + K L +GI +
Sbjct: 62 KALGATFII-RKGKTQEEILSLIEQLDITAVYWNICYEPDRLQSNQKMKMMLEDKGIICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM-SRCPSD 186
FN+ LL EPW + + F F+ F A P ++ S S P+
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYNA-----FQKQAIPKPTSKVQSIKWGSSLPAS 175
Query: 187 TLVFEDESEKGS--NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
V E + + W+P A K F + L YS+ R + S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMESIWNPTEEGAYKTFKKFFSSKLTFYSEGRDFPNQNVHSMLA 235
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
P+L FG++SV+ +FH + K + ++ VN F++ + RE+S Y+ +++P++
Sbjct: 236 PYLSFGQISVKLMFHYLINKS---TERQSSLFEKQVNSFIRQLIWREFSYYLLYHYPFTV 292
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
+PL + + F W +E + W++G TGYP +DAGMRELW TG++H+R R+ V+SF VK
Sbjct: 293 YKPLNKNFEHFPWDKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD +GE
Sbjct: 353 HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGE 412
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
Y+R+W+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R A M
Sbjct: 413 YIRKWVPELRDIPNKYIHKPWEAPEPILQKANIQLGDTYPLPVVDHKAARERALCAYKSM 472
>gi|153209159|ref|ZP_01947255.1| deoxyribodipyrimidine photolyase [Coxiella burnetii 'MSU Goat
Q177']
gi|212218603|ref|YP_002305390.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuK_Q154]
gi|120575482|gb|EAX32106.1| deoxyribodipyrimidine photolyase [Coxiella burnetii 'MSU Goat
Q177']
gi|212012865|gb|ACJ20245.1| deoxyribodipyrimidine photolyase [Coxiella burnetii CbuK_Q154]
Length = 472
Score = 311 bits (798), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 172/471 (36%), Positives = 276/471 (58%), Gaps = 16/471 (3%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
+I WFR+DLR+ DNPAL + A +I ++I ++ RWWL HSLS L
Sbjct: 2 TTIFWFRQDLRLSDNPALVEAAKSADHLIPLYI---LDDQLKMLVDAQRWWLYHSLSSLQ 58
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
++L GTSL+ K+ D+ LLE++K ++++N Y+P D + L +
Sbjct: 59 TALSKKGTSLILKKG-DTKRVLLELIKKYKVEKIYWNRSYEPPYREIDTYLENRLPP--L 115
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
+V +++ LL EP + + G + F FW K ++ P L PK+ + +
Sbjct: 116 SVEIYHSTLLTEPQKIKNKSGGYYKIFTPFW-KHINASLQPRKTLAAPKKFSQHRAIK-- 172
Query: 185 SDTLVFEDESEKGSN-ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
SD L + K + + W PG NA L FI L Y +R + D ++TS L
Sbjct: 173 SDNLETWNLLPKHPDWSQGFDQWKPGEKNAQIVLKKFIKENLKNYPAHRDRPDISSTSHL 232
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SP+LHFGE+S+R+V+ ++ A +K ++ ++FL+ + RE++ Y+ ++ P
Sbjct: 233 SPYLHFGEISIRQVW-----TAITQATIQDKNLQKAADVFLRQLIWREFAYYLLWHFPQM 287
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
+ F W ++ + +AW++ TGYP+VDAGMRELW TG++H+R+R++V+SF V
Sbjct: 288 GKSNFRNQFDNFKWKKNKNWLRAWQKWLTGYPIVDAGMRELWCTGYMHNRVRMIVASFLV 347
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WR G K+FW+TLLDADL ++ALGWQ+I+G PD + RI NP + KFDP+G
Sbjct: 348 KDLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGPDAAPYFRIFNPILQSKKFDPDG 407
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
Y++RW+PELA++P+++IH+P + P+++ +++ + LG +YPFPIV AK
Sbjct: 408 TYIKRWIPELAKVPSKYIHYPADMPDNISESSKVNLGVDYPFPIVNHHKAK 458
>gi|374261679|ref|ZP_09620257.1| deoxyribodipyrimidine photolyase [Legionella drancourtii LLAP12]
gi|363537773|gb|EHL31189.1| deoxyribodipyrimidine photolyase [Legionella drancourtii LLAP12]
Length = 477
Score = 311 bits (797), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 173/470 (36%), Positives = 258/470 (54%), Gaps = 31/470 (6%)
Query: 7 SIVWFRRDLRVEDNPALA-AGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFR+DLR DN ALA A +I ++I++ E G WWL HSL L
Sbjct: 4 AIVWFRQDLRCNDNQALAEACNHHQYIIPLYIYSQESLGA-----AQHWWLHHSLLALQK 58
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L+ G L K+ ++S + E++K +++N Y+P S+ RD + K+ L +G+
Sbjct: 59 ELKKQGLDLCLKQG-QALSIIHELIKNHKIEAVYWNRCYEPKSIQRDKQIKDELRLKGLQ 117
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
V SFN LL EPW V + G F F +W++C+ R++S + R P
Sbjct: 118 VYSFNGSLLNEPWTVKNKNGDYFKVFTPYWKQCIRQTTQ--------SRVSSIN-QRPPP 168
Query: 186 DTLVFEDES------EKGSNAL-LARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
T E S +K + A+ W PG A L FI L +Y + R
Sbjct: 169 LTSTSEQLSDWRLLPQKPNWAIEFPNYWEPGEHGAMNKLNFFIEHHLQDYQEARNHPSKT 228
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS L+PHLHFGE+S +V++ + ++ K S + FL +G RE+S Y+ +
Sbjct: 229 ATSRLAPHLHFGEISPWQVWNAIEEAKLQ-----PKCDLRSADHFLAELGWREFSYYLLY 283
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
+ P + F W DE + K W+ G TG+P+VDAGMRELW TG++H+R+R++V
Sbjct: 284 HFPELPNKNFRQEFDAFPWQQDETHLKCWQTGMTGFPIVDAGMRELWHTGYMHNRVRMIV 343
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF +K L + WR G +F++TLLDADL +++ WQ+++GT D + RI NP + K
Sbjct: 344 ASFLIKDLMIDWRAGAAWFYNTLLDADLANNSASWQWVAGTGADSAPYFRIFNPTLQSEK 403
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
FDP GEY++ W+PEL+++P +WIH PW AP L I LG +YP+P+V
Sbjct: 404 FDPQGEYIKMWIPELSQVPRQWIHKPWEAPPQTL---AITLGKDYPYPLV 450
>gi|325914014|ref|ZP_08176370.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas vesicatoria
ATCC 35937]
gi|325539783|gb|EGD11423.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas vesicatoria
ATCC 35937]
Length = 472
Score = 311 bits (797), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 176/454 (38%), Positives = 265/454 (58%), Gaps = 17/454 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFRRDLR++DNPAL A + AG I ++I AP EEG + PG SR W SL+ LD
Sbjct: 4 AIVWFRRDLRLQDNPALRAALDAGHDPIPLYIDAPHEEGEWAPGAASRSWRHRSLAALDD 63
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LR+LG+ LV R+ DS L EV+ TGA +++N Y+P + RD + K L +GI
Sbjct: 64 TLRALGSGLVI-RAGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRNLRERGIE 122
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS---MPFDPDAPLLPPKRINSGDMSR 182
V+S NA LL+EPW ++ QG P+ F FW L+ +P AP P + +
Sbjct: 123 VQSCNAALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAAVPAPRSLPPLPATLETVA 182
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
S L+ + + G W PG + A + L FI+G L Y +NR + D TS
Sbjct: 183 LESLALLPRLDWDHG----FWEHWQPGEAGAHEMLEIFIDGALDGYRENRDRPDRVGTSQ 238
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHLHFGE++ ++ + ++ N N A ++ +++ +G R++S ++ + P
Sbjct: 239 LSPHLHFGEIAPWRIASTLEAQR----NARNAA---EIDGYIRQLGWRDFSYHLLHHFPD 291
Query: 303 SHERPLLGHLKFFSWV-VDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ + L + F W D +AW++GRTG P+VDAGMR+LW TGW+H+R+R++V+S
Sbjct: 292 TTNQNLNPRFEGFDWAKADPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASL 351
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L++ W G ++FWDTL+DADL ++ +GWQ+++GT D + R+ NP + KFDP
Sbjct: 352 LCKHLRVHWLDGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 411
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAA 455
Y+ RW+PEL +L + PW P S+ + A
Sbjct: 412 QATYITRWVPELGKLAVKERFAPWLHPLSLARLA 445
>gi|417860350|ref|ZP_12505406.1| DNA photolyase [Agrobacterium tumefaciens F2]
gi|338823414|gb|EGP57382.1| DNA photolyase [Agrobacterium tumefaciens F2]
Length = 479
Score = 311 bits (797), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 189/494 (38%), Positives = 270/494 (54%), Gaps = 29/494 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGV-RAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
IVWFR+DLR+ DN AL A V G VI ++I + GP G WWL HSL+ L +
Sbjct: 9 IVWFRKDLRLSDNLALLAAVEHGGPVIPLYI-QEKSSGPL--GGAQEWWLHHSLASLTVA 65
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L G+ L+ RS D+ +L V+ TGA +F+N YDP + D K+AL+ G+ V
Sbjct: 66 LEETGSRLLL-RSGDAEETLRHVISETGADTIFWNRRYDPAGMATDKALKQALSDDGLTV 124
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM---SRC 183
RSF LL+EP V G P+ + FW + L +P AP PK + S + S+
Sbjct: 125 RSFAGHLLHEPSRVQTKSGGPYRVYTPFW-RALEGGEEPHAPADAPKSLKSPETWPKSQK 183
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
D + + + + + W+PG + A + L FI+G L Y + R TS L
Sbjct: 184 LDDWKLLPVKPDWARD--FSEIWTPGENAAREKLDDFIDGALKGYEEGRDFPAKDATSML 241
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
+PHL GE+S V+H + ++ F K + RE+ ++ F+ P
Sbjct: 242 APHLALGEISPAAVWHATK-------GLSRHIASNDISRFRKELVWREFCYHLLFHFPKL 294
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
E+ F W DE FKAW +G TGYP+VDAGMR+LW G +H+R+R++V+SF +
Sbjct: 295 DEKNWNESFDAFGWRQDEKSFKAWTRGMTGYPIVDAGMRQLWKHGTMHNRVRMIVASFLI 354
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WR G K+F DTL+DAD S+A WQ+++G+ D F RI NP +G KFD +G
Sbjct: 355 KHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPILQGEKFDGDG 414
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSE 483
+YVRR++PEL +L ++IH P+ AP +L AGIELG YP PIV D K R
Sbjct: 415 DYVRRFVPELEKLDRKFIHKPFQAPRELLNKAGIELGKTYPQPIV--DHTKAR------- 465
Query: 484 MWQQEAASRAAIEN 497
++ A+ AA++N
Sbjct: 466 --ERALAAYAAVKN 477
>gi|295706162|ref|YP_003599237.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319]
gi|294803821|gb|ADF40887.1| FAD binding domain of DNA photolyase [Bacillus megaterium DSM 319]
Length = 475
Score = 311 bits (796), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 164/473 (34%), Positives = 258/473 (54%), Gaps = 16/473 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IVW R+D R+ DNPAL + G V+ V+I EE G S+WWL H+L+ +S+
Sbjct: 6 IVWIRKDFRLVDNPALFHAAKEGMVVPVYIHDDYEESSM--GSASKWWLHHALNDFKNSI 63
Query: 68 RSL-GTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
+ GT +V K + V L +++ T A +++N Y+P L RD + + Q I +
Sbjct: 64 EKIQGTLIVQKGNPKDV--LQKLLHQTNAQDIYWNRRYEPHVLKRDKELQAFFSEQQINI 121
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
R+F LL+EPW + G P+ F A+++ K++ S S P +
Sbjct: 122 RTFEGFLLHEPWKITKENGDPYKVFTAYYKASQKHSVSSAV-----KKVTSIQASSKPVE 176
Query: 187 TLVFEDESEKGS---NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
+L D S + + W A TF+ L+ Y K R A SFL
Sbjct: 177 SLSVSDLDLLPSIPWDETIKSTWEATEKGAIDVFKTFLKNKLLHYEKGRDFPAEALNSFL 236
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SP+ G++S R ++H +R K +++ A ++ +F++ + R+++ + ++ P++
Sbjct: 237 SPYFATGQLSARVLYHYLRTKAEKVSSD---AFEQQAEMFIRQLIWRDFAYQLLYHFPHT 293
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
PL K F W +AW+ G+TGYPLVDAGMRELW TG++H+R+R++ +SF V
Sbjct: 294 TTEPLNEKFKQFQWADGNEELQAWKNGKTGYPLVDAGMRELWETGFMHNRVRMIAASFLV 353
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + W+ G +F+DTL+DADL ++ +GWQ+++G+ D + RI NP + KFD G
Sbjct: 354 KHLLIHWKHGANWFFDTLVDADLANNTMGWQWVAGSGADAAPYFRIFNPITQSEKFDKEG 413
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
EY+++WLPEL +P+ +IH PW AP VL+ A + L YP PIV AA+ R
Sbjct: 414 EYIKKWLPELKHIPSSYIHKPWEAPADVLEKANVTLNKTYPTPIVDHKAARER 466
>gi|434375590|ref|YP_006610234.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
gi|401874147|gb|AFQ26314.1| deoxyribodipyrimidine photolyase [Bacillus thuringiensis HD-789]
Length = 476
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 163/480 (33%), Positives = 266/480 (55%), Gaps = 16/480 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ V+I ++ + G ++WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPVYI----QDETFSIGSAAKWWLHHAIIDVQKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
++LG++ + R+ + +L +++ T +++N YDP L + + K L +GI +
Sbjct: 62 KALGSTFII-RNGKTQEEILSLIEQLDITAVYWNICYDPDRLKSNQKMKMMLEDKGIICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
FN+ LL EP + + F F+ F P +++ S +
Sbjct: 121 EFNSHLLLEPGIIKKKDNTEYKVFTPFYN-----AFQKQVIPKPIRKVQSIKWGNSLPAS 175
Query: 188 LVFEDESEKGS---NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
L + + + + W P A KA F + L YS+ R + T S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKAFKKFFSSKLASYSEGRDFPNQNTHSMLA 235
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
P+L FG++SV ++H + K +E VN F++ + RE+S Y+ +++P++
Sbjct: 236 PYLSFGQISVSWMYHYLINKS---TERQCSLFEEQVNSFIRQLIWREFSYYLLYHYPFTV 292
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
+PL + F W +E + W++G+TGYP +DAGMRELW TG++H+R R+ V+SF VK
Sbjct: 293 YKPLNKSFENFPWDKEEELLRVWQKGKTGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L +PW+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD NGE
Sbjct: 353 HLLIPWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGE 412
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
Y+R+W+PEL +P ++IH PW APE +LQ I+LG+ YP P+V AA+ R A M
Sbjct: 413 YIRKWVPELRDIPNKYIHKPWEAPEHILQKVNIKLGNAYPLPVVDHKAARERALCAYKSM 472
>gi|294665668|ref|ZP_06730944.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|292604563|gb|EFF47938.1| photolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
Length = 484
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 176/454 (38%), Positives = 262/454 (57%), Gaps = 17/454 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFRRDLR+EDNPAL A + AG I ++I AP EEG + PG SR W SL+ LD
Sbjct: 16 AIVWFRRDLRLEDNPALRAALDAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLAALDG 75
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LR+LG+ LV R +S L EV+ TGA +++N Y+P + RD + K L +GI
Sbjct: 76 ALRALGSGLVI-RVGNSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRDLRERGIE 134
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKC---LSMPFDPDAPLLPPKRINSGDMSR 182
+S N LL+EPW ++ QG P+ F FW L +P AP P S
Sbjct: 135 AQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNAPTQLQLPAAMGAPRSLPPLPASLKTDA 194
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+ LV + ++G W PG + A + L FI+G L Y +NR + D TS
Sbjct: 195 LDTLQLVPGVQWDQG----FWEHWRPGEAGAHEMLEIFIDGALSGYRENRDRPDRVGTSQ 250
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHLHFGE++ ++ + + + + G E ++ +++ +G R+++ ++ + P
Sbjct: 251 LSPHLHFGEIAPWRIASTLETHRTA------RNGAE-IDGYVRQLGWRDFAYHLLHHFPD 303
Query: 303 SHERPLLGHLKFFSW-VVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ + L F W VD +AW++GRTG P+VDAGMR+LW TGW+H+R+R++V+SF
Sbjct: 304 TTNQNLNPRFAGFDWATVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASF 363
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L++ W G ++FWDTL+DADL ++ LGWQ+++GT D + R+ NP + KFDP
Sbjct: 364 LCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 423
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAA 455
Y+ RW+PEL +L + PW P S+ + A
Sbjct: 424 QAAYITRWVPELGKLAVKERFAPWLHPLSLARVA 457
>gi|221197023|ref|ZP_03570070.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Burkholderia
multivorans CGD2M]
gi|221203696|ref|ZP_03576714.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Burkholderia
multivorans CGD2]
gi|421468296|ref|ZP_15916848.1| FAD binding domain of DNA photolyase [Burkholderia multivorans ATCC
BAA-247]
gi|221175862|gb|EEE08291.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Burkholderia
multivorans CGD2]
gi|221183577|gb|EEE15977.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Burkholderia
multivorans CGD2M]
gi|400232151|gb|EJO61787.1| FAD binding domain of DNA photolyase [Burkholderia multivorans ATCC
BAA-247]
Length = 476
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 170/454 (37%), Positives = 258/454 (56%), Gaps = 14/454 (3%)
Query: 7 SIVWFRRDLRVEDNPAL-AAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IV FRRDLR+ D+PAL AA R AV+ V++ P+E+ + PG SRWWL HSL+ LD
Sbjct: 4 AIVLFRRDLRLSDHPALSAACARHDAVLPVYVHTPDEDAIWSPGAASRWWLHHSLTSLDR 63
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LR G L+ ++ D ++ + +A GA +++ Y+P ++ D K AL AQG+A
Sbjct: 64 ALRQQGGRLLVMQN-DPTIAVPALARAVGAQCVYWTRRYEPAAIACDAALKSALRAQGVA 122
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFD--PDAPLLPPKRINSGDMSRC 183
+S+ L EPW V GQP+ F FW K + D P P + + + D +
Sbjct: 123 AQSYPGTLWQEPWKVATDSGQPYRVFTPFWRKLRTSLSDCHPLPAARPRRWMTTDDSTAV 182
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
+ L+ + G LA AW PG + A + L F++ L EY R TS L
Sbjct: 183 EAIGLLPRVRWDAG----LAEAWRPGEAGAWERLAEFVDEALAEYGDARDAPARMGTSRL 238
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
S HLH+GE++ ++ ++ + A+ + FL+ +G RE++ ++ ++ P++
Sbjct: 239 SAHLHYGEITPTQILRTLQER----ASRTTDRDRPDLEPFLRELGWREFAHHLLYHFPHT 294
Query: 304 HERPLLGHLKFFSWVVDEGY-FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ F+W D+ W+QGRTG PLVDAGMR+LW TGW+H+R+R+VV+SF
Sbjct: 295 TDANFDARFDTFAWAPDDNDDLARWQQGRTGIPLVDAGMRQLWQTGWMHNRVRMVVASFL 354
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
K L+ WR G ++FWDTL+DADL ++ LGWQ+++G D + R+ NP + KFDP+
Sbjct: 355 TKNLRRHWRHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPYLQAAKFDPD 414
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAG 456
Y++RWLPEL+ LP +H PW P + L A G
Sbjct: 415 AAYLKRWLPELSALPANVLHQPWKHP-AALSACG 447
>gi|58581149|ref|YP_200165.1| photolyase [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84623072|ref|YP_450444.1| photolyase [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|58425743|gb|AAW74780.1| photolyase [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84367012|dbj|BAE68170.1| photolyase [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 484
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 175/454 (38%), Positives = 265/454 (58%), Gaps = 17/454 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFRRDLR++DNPAL A + AG I ++I AP EEG + PG SR W SL+ L+
Sbjct: 16 AIVWFRRDLRLQDNPALRAALDAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLAALED 75
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LR+LG+ LV R+ DS L V+ TGA +++N Y+P + RD + K AL +GI
Sbjct: 76 ALRALGSGLVI-RAGDSAQVLDAVIAQTGAVAVYWNRKYEPATQPRDAQIKRALRERGIE 134
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS---MPFDPDAPLLPPKRINSGDMSR 182
+S N LL+EPW ++ QG P+ F FW L+ +P AP P
Sbjct: 135 AQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPATAPAPRSLPPLPAMLKTDA 194
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+ LV ++G W G + A + L FI+G L Y KNR + D TS
Sbjct: 195 LDTLQLVPSLNWDQG----FWEHWHAGEAGAHEMLEFFIDGGLSGYRKNRDRPDRVGTSQ 250
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHLHFGE++ ++ + ++ + + G E ++ +++ +G R+++ ++ + P
Sbjct: 251 LSPHLHFGEIAPWRIASALEAQRTA------RNGAE-IDGYIRQLGWRDFAYHLLHHFPD 303
Query: 303 SHERPLLGHLKFFSWV-VDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ + L + F W VD +AW++GRTG P+VDAGMR+LW TGW+H+R+R++V+SF
Sbjct: 304 TTNQNLNPRFEGFDWAKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASF 363
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L++ W G ++FWDTL+DADL ++ LGWQ+++GT D + R+ NP + KFDP
Sbjct: 364 LCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 423
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAA 455
+ Y+ RW+PEL +LP + PW P S+ + A
Sbjct: 424 HATYITRWVPELGKLPVKERFAPWLHPLSLARFA 457
>gi|423581405|ref|ZP_17557516.1| hypothetical protein IIA_02920 [Bacillus cereus VD014]
gi|401216170|gb|EJR22885.1| hypothetical protein IIA_02920 [Bacillus cereus VD014]
Length = 476
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 164/480 (34%), Positives = 264/480 (55%), Gaps = 16/480 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ ++I ++ + G ++WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPIYI----QDETFSIGSAAKWWLHHAIIDIKKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ R + +L ++K T +++N YDP L + + K L +GI +
Sbjct: 62 EALGSTLII-RKGNIQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDKGIICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM-SRCPSD 186
FN+ LL EPW + + F F+ F P ++ S S P+
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYN-----AFQKQVIPKPTSKVQSIKWGSSLPAS 175
Query: 187 TLVFEDESEKGS--NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
V E + + W P A K F + L YS+ R + S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKVFKKFFSSKLAFYSEGRDFPNQNAHSMLA 235
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
P+L FG++SV+ ++H + K ++ V F++ + RE+S Y+ +++P++
Sbjct: 236 PYLSFGQISVKLMYHYLINKS---TERQCSLFEKQVISFIRQLIWREFSYYLLYHYPFTV 292
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
+PL + + F W +E + W++G TGYP +DAGMRELW TG++H+R R+ V+SF VK
Sbjct: 293 YKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L + W+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD NGE
Sbjct: 353 HLLISWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGE 412
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
Y+R+W+PEL +P+++IH PW APE +LQ A I+LG YP P+V AA+ R A M
Sbjct: 413 YIRKWVPELRDMPSKYIHKPWEAPEHILQKANIKLGHTYPLPVVDHKAARERALCAYKSM 472
>gi|188575662|ref|YP_001912591.1| photolyase [Xanthomonas oryzae pv. oryzae PXO99A]
gi|188520114|gb|ACD58059.1| photolyase [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 472
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 175/454 (38%), Positives = 265/454 (58%), Gaps = 17/454 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFRRDLR++DNPAL A + AG I ++I AP EEG + PG SR W SL+ L+
Sbjct: 4 AIVWFRRDLRLQDNPALRAALDAGHHPIPLYIDAPHEEGEWTPGAASRTWRHRSLAALED 63
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LR+LG+ LV R+ DS L V+ TGA +++N Y+P + RD + K AL +GI
Sbjct: 64 ALRALGSGLVI-RAGDSAQVLDAVIAQTGAVAVYWNRKYEPATQPRDAQIKRALRERGIE 122
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS---MPFDPDAPLLPPKRINSGDMSR 182
+S N LL+EPW ++ QG P+ F FW L+ +P AP P
Sbjct: 123 AQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPATAPAPRSLPPLPAMLKTDA 182
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+ LV ++G W G + A + L FI+G L Y KNR + D TS
Sbjct: 183 LDTLQLVPSLNWDQG----FWEHWHAGEAGAHEMLEFFIDGGLSGYRKNRDRPDRVGTSQ 238
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHLHFGE++ ++ + ++ + + G E ++ +++ +G R+++ ++ + P
Sbjct: 239 LSPHLHFGEIAPWRIASALEAQRTA------RNGAE-IDGYIRQLGWRDFAYHLLHHFPD 291
Query: 303 SHERPLLGHLKFFSWV-VDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ + L + F W VD +AW++GRTG P+VDAGMR+LW TGW+H+R+R++V+SF
Sbjct: 292 TTNQNLNPRFEGFDWAKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASF 351
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L++ W G ++FWDTL+DADL ++ LGWQ+++GT D + R+ NP + KFDP
Sbjct: 352 LCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 411
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAA 455
+ Y+ RW+PEL +LP + PW P S+ + A
Sbjct: 412 HATYITRWVPELGKLPVKERFAPWLHPLSLARFA 445
>gi|15888554|ref|NP_354235.1| DNA photolyase [Agrobacterium fabrum str. C58]
gi|15156266|gb|AAK87020.1| DNA photolyase [Agrobacterium fabrum str. C58]
Length = 479
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 186/473 (39%), Positives = 260/473 (54%), Gaps = 20/473 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGV-RAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
IVWFR+DLR+ DN AL A V G VI V+I + GP G WWL HSL+ L SS
Sbjct: 9 IVWFRKDLRLSDNLALLAAVEHGGPVIPVYI-REKSAGPL--GGAQEWWLHHSLAALSSS 65
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L G LV S D+ L +++ TGA + +N YDP + D K+ L G+ V
Sbjct: 66 LEKAGGRLVLA-SGDAERILRDLISETGADTVVWNRRYDPTGMATDKALKQKLRDDGLTV 124
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM---SRC 183
RSF+ LL+EP + G P+ + FW + L +P AP PPK + + + S
Sbjct: 125 RSFSGQLLHEPSRLQTKSGGPYRVYTPFW-RALEGSDEPHAPADPPKSLTAPKVWPKSEK 183
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
S+ + + + + + W+PG + A L FI+G L Y + R TS L
Sbjct: 184 LSNWKLLPTKPDWAKD--FSDIWTPGETGALDKLDDFIDGALKGYEEGRDFPAKPATSLL 241
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SPHL GE+S V+H + ++ F K I RE+ ++ F+ P
Sbjct: 242 SPHLAAGEISPAAVWHATK-------GLSRHIASNDISRFRKEIVWREFCYHLLFHFPEL 294
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
E+ FSW DE FKAW +G TGYP+VDAGMR+LW G +H+R+R++V+SF +
Sbjct: 295 GEKNWNDSFDAFSWRDDEKSFKAWTRGMTGYPIVDAGMRQLWQHGTMHNRVRMIVASFLI 354
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WR G K+F DTL+DAD S+A WQ+++G+ D F RI NP +G KFD +G
Sbjct: 355 KHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPILQGEKFDGDG 414
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
+YVRR++PEL +L ++IH P+ AP+ L+ AG+ELG YP PIV D K R
Sbjct: 415 DYVRRFVPELEKLERKYIHKPFEAPKDALKKAGVELGKTYPLPIV--DHGKAR 465
>gi|300023724|ref|YP_003756335.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans
ATCC 51888]
gi|299525545|gb|ADJ24014.1| DNA photolyase FAD-binding protein [Hyphomicrobium denitrificans
ATCC 51888]
Length = 482
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 175/473 (36%), Positives = 261/473 (55%), Gaps = 13/473 (2%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
++WFR DLR+ D+ AL A V GA ++ ++I + G S WWL SL+ L
Sbjct: 7 VLWFRNDLRLGDHAALVAAVHTGAPILPLYILDDASPKQWKMGGASHWWLDKSLAALAGD 66
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L S G LV +R DS + LL +++ TGA ++F Y+P ++ + R K L +A
Sbjct: 67 LASRGGPLVLRRG-DSETELLRMIEETGAAAVYFTRSYEPWAVALEQRLKTKLDDANVAC 125
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
R F LL EP D+ + G + + F + + P + P+RI + + + P
Sbjct: 126 RRFGGRLLREPEDMRTSNGGFYKVYTPF-SRAIMKDLVPAKSVRAPERIAT--LEKQPKS 182
Query: 187 TLVFE---DESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
+ + + + A AW PG + A K L+ F+ L Y+++R + TS L
Sbjct: 183 ERLRDWALHPQKPDWSKGFAAAWQPGEAGARKRLSDFVRTALKSYARDRNCPATPGTSRL 242
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SPHL FGE+S +H A D + FLK + RE+S + F+ P
Sbjct: 243 SPHLAFGEISPAACWHAAAH-----AGGKTNGSDNAAETFLKELLWREFSAGLLFHFPEL 297
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
E P F W + + KAW+ G+TGYP+VDAGMRELWATG++H+R+R++ +SF +
Sbjct: 298 PEEPFRPEFSAFPWHGNAKHLKAWQTGQTGYPIVDAGMRELWATGYMHNRVRMITASFLI 357
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L +PW+ G +FWDTL+DADL +++ WQ+++G+ D + RI NP +G KFDP+G
Sbjct: 358 KHLLIPWQTGEAWFWDTLVDADLANNSANWQWVAGSGADAAPYFRIFNPVLQGEKFDPDG 417
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
+YVRRW+PELA+LP + IH PW A L AG++LG +YP PIV A+ R
Sbjct: 418 DYVRRWVPELAKLPRQIIHAPWKADSGTLMEAGVKLGKSYPNPIVEHGEARAR 470
>gi|383771224|ref|YP_005450289.1| DNA photolyase [Bradyrhizobium sp. S23321]
gi|381359347|dbj|BAL76177.1| DNA photolyase [Bradyrhizobium sp. S23321]
Length = 479
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 185/471 (39%), Positives = 263/471 (55%), Gaps = 14/471 (2%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IVWFR DLR+ D+PAL A + GA + + ++ ++ PG +RWWL SL L + +
Sbjct: 8 IVWFRDDLRLSDHPALHAAAKTGAPV-ICLYVLDDAAGRAPGGAARWWLAQSLRALGADI 66
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
R G SL+ ++ + + EV +A GAT +++N + + + AL GI
Sbjct: 67 RRRGGSLILRKGP-AAGVIPEVARAIGATAVYWNEVAQAPHQSVEKALEAALAKLGIDSH 125
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
F DLL P + + +G+ F FW + L++ DP PL PK + +G + SD
Sbjct: 126 IFPGDLLVAPSAIRNKEGRGLRVFTPFWRRVLAL-GDPPKPLPAPKELRAG--PKITSDA 182
Query: 188 L-VFEDESEKGSNAL-LARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
L ++ E K A L +W PG ++A L F+ Y+ +R + D TS LSP
Sbjct: 183 LESWKLEPSKPDWAGGLRESWEPGEASARTRLRDFLKHTAHSYAGDRDRPDRKGTSSLSP 242
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
HL FGE+S R+V+H R A N A V FL +G RE+ R++ +HP
Sbjct: 243 HLRFGELSPRQVWHAARF-----AAAENPAIGPGVEKFLSELGWREFCRHLLHDHPDLAT 297
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
L + F W D+ AW++GRTGYP+VDAG+RELW TG +H+R+R+VV+SF VK
Sbjct: 298 VNLQANFDGFPWKPDKTALAAWQRGRTGYPIVDAGLRELWHTGVMHNRVRMVVASFLVKH 357
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
L + WR G +FWDTL+DAD S+ WQ+++G D + R+ NPQ +G KFDP+G Y
Sbjct: 358 LLIDWRVGESWFWDTLVDADAGSNPANWQWVAGCGADAAPYFRVFNPQLQGEKFDPDGTY 417
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
VRRW+PEL +P + IH PW A L +AG+ LG YP PIV D AK R
Sbjct: 418 VRRWVPELKDMPAKLIHQPWQATPIELASAGVTLGKTYPQPIV--DHAKGR 466
>gi|384419903|ref|YP_005629263.1| photolyase [Xanthomonas oryzae pv. oryzicola BLS256]
gi|353462816|gb|AEQ97095.1| photolyase [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 472
Score = 309 bits (791), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 174/454 (38%), Positives = 266/454 (58%), Gaps = 17/454 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFRRDLR++DNPAL A + AG I ++I AP EEG + PG SR W SL+ L+
Sbjct: 4 AIVWFRRDLRLQDNPALRAALDAGHHPIPLYIDAPHEEGEWTPGGASRTWRHRSLAALED 63
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LR+LG+ LV R+ DS L +V+ TGA +++N Y+P + RD + K AL +GI
Sbjct: 64 ALRALGSGLVI-RAGDSAQVLDDVIAQTGAVAVYWNRKYEPATQPRDAQIKRALRERGIE 122
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS---MPFDPDAPLLPPKRINSGDMSR 182
+S N LL+EPW ++ QG P+ F FW L+ +P AP P
Sbjct: 123 AQSCNCALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPATAPAPGSLPPLPAMLKTDA 182
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+ LV ++G W G + A + L FI+G L Y +NR + D TS
Sbjct: 183 LDTLQLVPSLNWDQG----FWEHWHAGEAGAHEMLEIFIDGGLSGYRENRDRPDRVGTSQ 238
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHLHFGE++ ++ + ++ + + G E ++ +++ +G R+++ ++ + P
Sbjct: 239 LSPHLHFGEIAPWRIASALEAQRTA------RNGAE-IDGYIRQLGWRDFAYHLLHHFPD 291
Query: 303 SHERPLLGHLKFFSWV-VDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ + L + F W VD +AW++GRTG P+VDAGMR+LW TGW+H+R+R++V+SF
Sbjct: 292 TTNQNLNPRFEGFDWAKVDPVALQAWQRGRTGVPIVDAGMRQLWHTGWMHNRVRMIVASF 351
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L++ W G ++FWDTL+DADL ++ LGWQ+++GT D + R+ NP + KFDP
Sbjct: 352 LCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 411
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAA 455
+ Y+ RW+PEL +LP + PW P S+ + A
Sbjct: 412 HATYITRWVPELGKLPVKERFAPWLHPLSLARFA 445
>gi|228921829|ref|ZP_04085144.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228837834|gb|EEM83160.1| Deoxyribodipyrimidine photolyase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 476
Score = 308 bits (790), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 163/480 (33%), Positives = 263/480 (54%), Gaps = 16/480 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ ++I ++ + G ++WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPIYI----QDETFSIGSAAKWWLHHAIIDIKKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ R ++ +L ++K T +++N YDP L + + K L +GI +
Sbjct: 62 EALGSTLII-RKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDKGIICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM-SRCPSD 186
FN+ LL EPW + + F F+ F P ++ S S P+
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYN-----AFQKQVIPKPTSKVQSIKWGSSLPAS 175
Query: 187 TLVFEDESEKGS--NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
V E + + W P A K F + L YS+ R + S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKVFKKFFSSKLAFYSEGRDFPNQNAHSMLA 235
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
P+L FG++ V+ ++H + K ++ V F++ + RE+S Y+ +++P++
Sbjct: 236 PYLSFGQIPVKLMYHYLINKS---TERQCSLFEKQVISFIRQLIWREFSYYLLYHYPFTV 292
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
+PL + + F W +E + W++G TGYP +DAGMRELW TG++H+R R+ V+SF VK
Sbjct: 293 YKPLNKNFEHFPWNKEEELLRVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L + W+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD NGE
Sbjct: 353 HLLISWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGE 412
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
Y+R+W+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R A M
Sbjct: 413 YIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVDHKAARERALCAYKSM 472
>gi|423636149|ref|ZP_17611802.1| hypothetical protein IK7_02558 [Bacillus cereus VD156]
gi|401276137|gb|EJR82094.1| hypothetical protein IK7_02558 [Bacillus cereus VD156]
Length = 476
Score = 308 bits (790), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 163/480 (33%), Positives = 263/480 (54%), Gaps = 16/480 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL V++G V+ ++I ++ + G ++WWL H++ + L
Sbjct: 6 IVMFQKDFRLYDNPALFEAVQSGEVLPIYI----QDETFSIGSAAKWWLHHAIIDIKKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ R ++ +L ++K T +++N YDP L + + K L +GI +
Sbjct: 62 EALGSTLII-RKGNTQEEILSLIKQLDITAVYWNSCYDPDRLKSNQKMKMILEDKGIICK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM-SRCPSD 186
FN+ LL EPW + + F F+ F P ++ S S P+
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYN-----AFQKQVIPKPTSKVQSIKWGSSLPAS 175
Query: 187 TLVFEDESEKGS--NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
V E + + W P A K F + L YS+ R + S L+
Sbjct: 176 LSVSELHLLPTIPWTSHMEAIWDPTEEGAYKVFKKFFSSKLAFYSEGRDFPNQNAHSMLA 235
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
P+L FG++ V+ ++H + K ++ V F++ + RE+S Y+ +++P++
Sbjct: 236 PYLSFGQIPVKLMYHYLINKS---TERQCSLFEKQVISFIRQLIWREFSYYLLYHYPFTV 292
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
+PL + + F W +E + W++G TGYP +DAGMRELW TG++H+R R+ V+SF VK
Sbjct: 293 YKPLNKNFEHFPWNKEEELLRVWQRGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVK 352
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L + W+ G K+F DTLLDAD+ ++ +GWQ+++G+ D + RI NP +G KFD NGE
Sbjct: 353 HLLISWQEGAKWFMDTLLDADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKNGE 412
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
Y+R+W+PEL +P ++IH PW APE +LQ A I+LG YP P+V AA+ R A M
Sbjct: 413 YIRKWVPELRDIPNKYIHKPWEAPEHILQKANIKLGHTYPLPVVDHKAARERALCAYKSM 472
>gi|407771650|ref|ZP_11119003.1| Deoxyribodipyrimidine photolyase [Thalassospira xiamenensis M-5 =
DSM 17429]
gi|407285351|gb|EKF10854.1| Deoxyribodipyrimidine photolyase [Thalassospira xiamenensis M-5 =
DSM 17429]
Length = 494
Score = 308 bits (789), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 185/490 (37%), Positives = 266/490 (54%), Gaps = 22/490 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVR-----AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLS 61
+I+WFR DLR+ DNPAL A V+ G V+ VFI + G +RWWL+ +L+
Sbjct: 10 AIMWFRNDLRLADNPALNASVKWAQQNNGIVLPVFILDRVIDAQL--GGATRWWLEKTLT 67
Query: 62 HLDSSLRSLGTSL-----VTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAK 116
LD SL ++ V + V + L+ GA LF+N LYD S+ RD K
Sbjct: 68 RLDESLATVAGKKAPCLRVFRSDARDVFNQLQTDHKIGA--LFWNRLYDKASIARDADIK 125
Query: 117 EALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRIN 176
+L Q I SFN LLYEPW+V G F F+ FW CL +P + P + I
Sbjct: 126 SSLRDQNIECESFNGQLLYEPWEVKTGAGSDFKVFSPFWRACLKLPPPAEPKKAP-ESIP 184
Query: 177 SGDMSRCPSDTLVFEDESEKGSN--ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRK 234
GD+ + D S K + A ++PG A L FI+G L +Y+ R +
Sbjct: 185 LGDLQLSDEADIAGLDLSPKPFDWATGFADRFTPGEQGAMDQLHDFIDGRLSDYADLRDR 244
Query: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSR 294
D TS LSPHL FGE+S R+V+H + +G A F+ +G RE++
Sbjct: 245 PDHRVTSELSPHLRFGEISPRQVWHAANHYADAHPGQGKTASK-----FMAELGWREFAH 299
Query: 295 YMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
++ F+ PL G F W D + W++G+TG+P+VDAGMRELW TG++H+R+
Sbjct: 300 HILFHARDLKSVPLQGQFTDFPWDDDPKALERWQRGQTGFPIVDAGMRELWHTGYMHNRV 359
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R++V S VK L + WR G+ +F DTL+DA ++ WQ+I G D + RI NP
Sbjct: 360 RMIVGSVLVKHLLIHWREGLAWFDDTLVDACPANNPFSWQWIGGCGADAAPYFRIFNPVL 419
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
+G KFDP+G YVR+W+PEL+ +P ++IH PW A +L+AAG++LG +YP P++ I +
Sbjct: 420 QGEKFDPDGRYVRQWVPELSDMPAQYIHKPWEASPLILKAAGVDLGQSYPEPLIGIKEGR 479
Query: 475 CRLDEALSEM 484
R A +M
Sbjct: 480 ERALAAYQDM 489
>gi|456734211|gb|EMF59033.1| Deoxyribodipyrimidine photolyase [Stenotrophomonas maltophilia
EPM1]
Length = 471
Score = 308 bits (789), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 178/457 (38%), Positives = 260/457 (56%), Gaps = 37/457 (8%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
++VWFRRDLR++DNPAL A + AG V+ V+I AP EEG + PG S W SL+ LD
Sbjct: 3 VALVWFRRDLRLQDNPALQAALDAGHDVVPVYIHAPHEEGEWAPGAASDAWRHRSLAALD 62
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ LR+ G+SLV RS DS+ +L ++ TGA +++N Y+P + RD K L QGI
Sbjct: 63 ADLRTRGSSLVL-RSGDSLPALQLLIAQTGAEAVYWNRKYEPATQPRDATIKRMLREQGI 121
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS---MPFDPDAP-LLPPKRINS--- 177
+S N LL+EPWD+ QGQP+ F +W LS +P AP L P ++S
Sbjct: 122 DAQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWRLPALQAAPEALAPHAVDSLAL 181
Query: 178 GDMSRCPS---DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRK 234
D+ P+ DT +E W PG + A +AL+ F +G L Y + R
Sbjct: 182 DDLQLAPTLDWDTGFWEH-------------WQPGEAGALEALSVFEDGALRGYREQRDL 228
Query: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEG--NKAGDESVNLFLKSIGLREY 292
D TS LSPHLHFGE++ ++ H A EG + D ++ +L+ +G R++
Sbjct: 229 PDRVGTSRLSPHLHFGEIAPWRIAH---------ALEGLRSAGADADIDGYLRQLGWRDF 279
Query: 293 SRYMSFNHPYSHERPLLGHLKFFSWVV-DEGYFKAWRQGRTGYPLVDAGMRELWATGWLH 351
+ ++ + P + L F W E AW++G TG P+VDAG+RELW TG++H
Sbjct: 280 AYHLLHHFPKTPTDNLNPRFDRFPWATPSEAQLHAWQRGNTGVPIVDAGLRELWHTGYMH 339
Query: 352 DRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDN 411
+R+R++V+S+ K L+ W G ++FWDTL+DADL ++ +GWQ+++GT D + R+ N
Sbjct: 340 NRVRMIVASYLCKHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFN 399
Query: 412 PQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAP 448
P + KFDP Y+ RW+PELA LP + PW P
Sbjct: 400 PVTQAEKFDPQARYISRWVPELAALPVKARFAPWQHP 436
>gi|289670152|ref|ZP_06491227.1| photolyase [Xanthomonas campestris pv. musacearum NCPPB 4381]
Length = 484
Score = 308 bits (789), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 180/468 (38%), Positives = 271/468 (57%), Gaps = 23/468 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFRRDLR+EDNPAL A + AG I ++I AP EEG + PG SR W SL+ LD
Sbjct: 16 AIVWFRRDLRLEDNPALRAALDAGHHPIPLYIDAPHEEGEWTPGVASRTWRHRSLAALDD 75
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LR+ G+ LV R+ DS L EV+ TGA +++N Y+P + RD + K AL +GI
Sbjct: 76 ALRARGSGLVI-RAGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRALRERGIE 134
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS---MPFDPDAPLLPPKRINSGDMSR 182
+S N+ LL+EPW ++ QG P+ F FW L+ +P AP P +
Sbjct: 135 AQSCNSALLFEPWQLSTQQGGPYKMFTPFWRNALTQLHLPAAVPAPRSLPPLPAALKTDA 194
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+ LV ++G PG + A + L FI+G L Y +NR + D TS
Sbjct: 195 LDTLQLVPSLNWDQG----FWEHGQPGEAGAHEMLEIFIDGALSGYRENRDRPDRVGTSQ 250
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHLHFGE++ ++ + ++ + + G E ++ +++ +G R+++ ++ + P
Sbjct: 251 LSPHLHFGEIAPWRIASTLEARRTA------RNGAE-IDGYIRQLGWRDFAYHLLHHFPD 303
Query: 303 SHERPLLGHLKFFSWV-VDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ + L + F W VD +AW++GRTG P+VDAGMR+LW TGW+H+R+R++V+SF
Sbjct: 304 TTNQNLNPRFEGFDWTKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASF 363
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L++ W G ++FWDTL+DADL ++ LGWQ+++GT D + R+ NP + KFDP
Sbjct: 364 LCKHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 423
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP-FPIV 468
Y+ RW+PEL +L + PW P S+ + A S YP PI+
Sbjct: 424 QATYITRWVPELGKLAVKERFAPWLHPLSLARFA-----SEYPRAPII 466
>gi|261855425|ref|YP_003262708.1| deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus
c2]
gi|261835894|gb|ACX95661.1| Deoxyribodipyrimidine photo-lyase [Halothiobacillus neapolitanus
c2]
Length = 490
Score = 308 bits (789), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 178/490 (36%), Positives = 266/490 (54%), Gaps = 35/490 (7%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA----VIAVFI---WAPEEE-----GPYYPGRVSR 53
+IVWFR+DLR+ D+PAL A ++ GA +I V+I +AP ++ P Y G +R
Sbjct: 2 TTIVWFRQDLRLGDHPALDAAIQTGADQGHIIPVYIHPGYAPSDQTADATKPLYEGAAAR 61
Query: 54 WWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDH 113
WW HSL L L S G+ L+ R + ++ L ++ T A ++ +N +P + D
Sbjct: 62 WWRHHSLRSLAERLASCGSRLII-RQGEPLAELQRLIHETKANRVVWNRRMEPAARAEDT 120
Query: 114 RAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKC----LSMPFDPDAPL 169
R K AL A+GI V SFN + L+EPW + + QG+PF F +W+ L +P P+
Sbjct: 121 RIKAALRAEGINVDSFNGNYLHEPWTIQNKQGKPFKVFTPYWKAVVAAGLDLPTYPEPDN 180
Query: 170 LP--PKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLI- 226
LP P+ +NS + + D+ W PG A F+ PLI
Sbjct: 181 LPTVPRALNSLAIDELELLPAIAWDKD-------FYNHWQPGEPGAWSRFEDFL--PLID 231
Query: 227 EYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKS 286
EY++ R S LS HLHFGE+S R++ + G+ + F++
Sbjct: 232 EYAEARNHLIGTGVSKLSAHLHFGEISPRQIVRYLL------DTRGSVLEPRGIEHFVRE 285
Query: 287 IGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWA 346
+G RE+ Y+++++P + + PL F W +AW++G+TG P+VDA MR LW
Sbjct: 286 LGWREFGAYLAYHYPQTVDAPLDARFLNFKWRDAPDDLRAWQRGQTGIPVVDAAMRCLWQ 345
Query: 347 TGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAF 406
TGW+H+R R++V+SF K L + WR G +F DTL+DAD S+ GWQ+ +GT D +
Sbjct: 346 TGWMHNRARMIVASFLTKNLLIDWRCGAAWFMDTLVDADEPSNTAGWQWTAGTGADAAPY 405
Query: 407 DRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFP 466
RI NP + KFDP+G ++RRW+PELARL +++ PW A E+ L AGI LG YP P
Sbjct: 406 FRIFNPVLQAEKFDPDGTFIRRWVPELARLENKYLFAPWTASETALAQAGIVLGKTYPEP 465
Query: 467 IVRIDAAKCR 476
I + ++ R
Sbjct: 466 ISDLKVSRQR 475
>gi|87120903|ref|ZP_01076795.1| putative photolyase [Marinomonas sp. MED121]
gi|86163741|gb|EAQ65014.1| putative photolyase [Marinomonas sp. MED121]
Length = 475
Score = 308 bits (789), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 170/496 (34%), Positives = 266/496 (53%), Gaps = 47/496 (9%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
I WFR+DLR+ DNPAL+A V G V+ ++I + + G SRWWL HSL+ LD+SL
Sbjct: 7 IHWFRQDLRLSDNPALSAAVSQGDVLPIYILDDKNANEFAMGGASRWWLHHSLTALDASL 66
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
T+ + + + LLE+++ T + +N Y+P + RD + K+ L GI V+
Sbjct: 67 ----TACLNLYKGEPLEVLLELIERLDVTHVVWNRCYEPWRMQRDEKIKQTLKEIGIQVQ 122
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEK-CLS--MPFDPDAPLLPPKRINSGDMSRCP 184
S+NA LL+EPW + G + F F+ K CL MP P + R
Sbjct: 123 SYNASLLWEPWQIKKPDGTAYKVFTPFYRKGCLKAEMPRQP--------------LPRPD 168
Query: 185 SDTLVFEDESEKGSNAL-----------LARAWSPGWSNADKALTTFINGPLIEYSKNRR 233
+ + +D+ + + L W G A F+ L Y + R
Sbjct: 169 NQAVYLKDDKGQALDGLNLLPTIAWDEPFKDLWQIGEDKAQSQFFKFLEEGLASYKEGRN 228
Query: 234 KADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYS 293
+ LSPH+HFGE+S ++++ V+ + A +E V+ F +G RE+S
Sbjct: 229 IPSKPFVTRLSPHIHFGEISPNQLWYGVQ----------SVADNEHVDHFCSELGWREFS 278
Query: 294 RYMSFNHPYSHERPLLGHLKFFSWVVDE-----GYFKAWRQGRTGYPLVDAGMRELWATG 348
F +P L F W ++ +AW+QG+TG P+VDAGMRELW TG
Sbjct: 279 YSQLFVNPSLPTHNLQSKFDAFPWREEDTSSKDSLLRAWQQGKTGIPMVDAGMRELWQTG 338
Query: 349 WLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDR 408
++H+R+R++V+SF VK L++ W G ++FWDTLLDADL +++ WQ+++G D + R
Sbjct: 339 YMHNRVRMIVASFLVKNLRIHWHQGERWFWDTLLDADLANNSASWQWVAGCGADAAPYFR 398
Query: 409 IDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
I NP +G +FD G+Y+++++PE++ LP +++ PW APE VLQ AG++LG YP PI+
Sbjct: 399 IFNPVVQGQRFDAEGDYIKKFVPEISLLPKKYLFSPWEAPELVLQEAGVKLGETYPQPII 458
Query: 469 RIDAAKCRLDEALSEM 484
+ A++ EA +
Sbjct: 459 DLKASREAALEAFKSL 474
>gi|424870229|ref|ZP_18293891.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393165930|gb|EJC65977.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 483
Score = 308 bits (789), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 186/469 (39%), Positives = 255/469 (54%), Gaps = 23/469 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I+WFR+DLR++DN AL A R+G +I ++I PE G G WWL HSL LD S
Sbjct: 10 ILWFRKDLRLDDNQALTAAHRSGRPIIPLYISEPETAGTGPLGAAQAWWLHHSLKALDRS 69
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
LR LV S +++ L +K +GA +F+N YDP D R K L Q I V
Sbjct: 70 LRKRQGRLVLA-SGEALEVLCVFIKESGADAVFWNRRYDPSGTSIDIRIKHQLEKQAIEV 128
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP-S 185
RSF LL+EP + G P+ + FW + L +P+ PL P ++ S+ P S
Sbjct: 129 RSFGGQLLHEPSRLMTGNGTPYRAYTPFW-RALEGGGEPEPPLEAPAKLRL--TSQFPKS 185
Query: 186 DTLVFEDESEKGSNAL------LARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+TL ES K A A W+PG + L F+ L Y +NR T
Sbjct: 186 ETL----ESWKLLPAKPDWAGDFADLWTPGEEGGHEKLRAFVEDALDGYKENRDYPARPT 241
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSPHL GE+S +++ R + + F K I RE+S ++ F+
Sbjct: 242 TSMLSPHLALGEISPARIWDATR-------GLSQRVPAADIVHFRKEIAWREFSYHLLFH 294
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P F W D G F+AWR+G TGYP+VDAGMR+LW GW+H+R+R++V+
Sbjct: 295 FPRLASANWNDRFDGFEWRNDSGDFQAWRRGMTGYPIVDAGMRQLWRHGWMHNRVRMIVA 354
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF +K L + WR G +F DTL+DAD ++A WQ+++G+ D F RI NP +G KF
Sbjct: 355 SFLIKDLMIDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQGEKF 414
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
DP+G+YVR ++PEL L ++IH P+ AP S+L AGI LG YP PIV
Sbjct: 415 DPDGDYVRTYVPELRELGAKYIHRPFEAPTSMLDEAGITLGQTYPKPIV 463
>gi|289662993|ref|ZP_06484574.1| photolyase [Xanthomonas campestris pv. vasculorum NCPPB 702]
Length = 484
Score = 308 bits (788), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 174/452 (38%), Positives = 260/452 (57%), Gaps = 13/452 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFRRDLR+EDNPAL A + AG I ++I A EEG + PG SR W SL+ LD
Sbjct: 16 AIVWFRRDLRLEDNPALRAALDAGHHPIPLYIDALHEEGEWTPGAASRTWRHRSLAALDD 75
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LR+ G+ LV R+ DS L EV+ TGA +++N Y+P + RD + K AL +GI
Sbjct: 76 ALRARGSGLVI-RAGDSAQVLDEVIAQTGAVAVYWNRKYEPATQPRDAQIKRALRERGIE 134
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
+S N+ LL+EPW ++ QG P+ F FW L+ P A +P R + +
Sbjct: 135 AQSCNSALLFEPWQLSTQQGGPYKVFTPFWRNALTQLQLPAA--VPAPRSLPPLPAALKT 192
Query: 186 DTL-VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
D L + S + W PG + A + L FI+G L Y +NR + D TS LS
Sbjct: 193 DALDTLQLVSSLNWDQGFWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRVGTSQLS 252
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
PHLHFGE++ ++ + + + ++ +++ +G R+++ Y+ + P +
Sbjct: 253 PHLHFGEIAPWRIASTLEAHRTA-------RNCAEIDGYIRQLGWRDFAYYLLHHFPDTT 305
Query: 305 ERPLLGHLKFFSWV-VDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
+ L + F W VD AW++GRTG P+VDAGMR+LW TGW+H+R+R++V+SF
Sbjct: 306 NQNLNPRFEGFDWAKVDPVALHAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASFLC 365
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L++ W G ++FWDTL+DADL ++ LGWQ+++GT D + R+ NP + KFDP
Sbjct: 366 KHLRIHWIEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQA 425
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAA 455
Y+ RW+PEL +L + PW P S+ + A
Sbjct: 426 TYITRWVPELGKLAVKERFAPWLHPLSLARFA 457
>gi|21230891|ref|NP_636808.1| photolyase-like protein [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66769110|ref|YP_243872.1| photolyase-like protein [Xanthomonas campestris pv. campestris str.
8004]
gi|21112501|gb|AAM40732.1| photolyase-like protein [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66574442|gb|AAY49852.1| photolyase-like protein [Xanthomonas campestris pv. campestris str.
8004]
Length = 484
Score = 308 bits (788), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 180/468 (38%), Positives = 267/468 (57%), Gaps = 23/468 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFRRDLR+EDNPAL A + AG I ++I AP EEG + PG SR W SL+ LD+
Sbjct: 16 AIVWFRRDLRLEDNPALRAALDAGHDPIPLYIDAPHEEGQWAPGAASRAWRHRSLAALDA 75
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SLR+ G++L+ R DS L V+ T A +++N Y+P + RD + K +L +G+
Sbjct: 76 SLRARGSALLI-RQGDSAQVLDAVIAQTEAVAVYWNRKYEPATQPRDAQIKRSLRERGLE 134
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLP---PKRINSGDMSR 182
V+S NA LL+EPW + QG+P+ F FW L+ PDA P P S D
Sbjct: 135 VQSCNAALLFEPWTLATQQGRPYKVFTPFWRNALTQLRLPDAMPAPRSLPPLPASLDGVH 194
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+ L+ ++G W PG + A + L F++G L Y +NR + D TS
Sbjct: 195 VDALNLLPTPAWDQG----FWEHWQPGEAGAHEMLEIFVDGALSGYRENRDRPDRVGTSQ 250
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHLHFGE++ RI A + G + ++ +++ +G R+++ ++ + P
Sbjct: 251 LSPHLHFGEIAP------WRIASTLEAQRSARNGAD-IDGYIRQLGWRDFAYHLLHHFPD 303
Query: 303 SHERPLLGHLKFFSW-VVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ + L F W VD AW++GRTG P+VDAG+R+LW TGW+H+R+R++V+S
Sbjct: 304 TTTQNLNPRFAGFDWATVDPVTLDAWQRGRTGIPIVDAGLRQLWHTGWMHNRVRMIVASL 363
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L++ W G ++FWDTL+DADL ++ +GWQ+++GT D + R+ NP + KFDP
Sbjct: 364 LCKHLRVHWLEGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 423
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP-FPIV 468
Y+ RW+PELA LP + PW P S+ + L YP PI+
Sbjct: 424 QATYITRWIPELAALPVKERFAPWLHPLSLAR-----LAPTYPRAPII 466
>gi|190573805|ref|YP_001971650.1| DNA photolyase [Stenotrophomonas maltophilia K279a]
gi|190011727|emb|CAQ45346.1| putative DNA photolyase [Stenotrophomonas maltophilia K279a]
Length = 473
Score = 308 bits (788), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 178/457 (38%), Positives = 261/457 (57%), Gaps = 37/457 (8%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
++VWFRRDLR++DNPAL A + AG V+ V+I AP EEG + PG S W SL+ LD
Sbjct: 5 VALVWFRRDLRLQDNPALQAALDAGHDVVPVYIHAPHEEGEWAPGAASDAWRHRSLAALD 64
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ LR+ G+SLV RS DS+ +L ++ TGA +++N Y+P + RD K L QGI
Sbjct: 65 ADLRTRGSSLVL-RSGDSLPALQLLIAQTGAEAVYWNRKYEPATQPRDATIKRMLREQGI 123
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS---MPFDPDAP-LLPPKRINS--- 177
+S N LL+EPWD+ QGQP+ F +W LS +P AP L P ++S
Sbjct: 124 DAQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWRLPALQAAPEALAPHAVDSLAL 183
Query: 178 GDMSRCPS---DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRK 234
D+ P+ DT +E W PG + A +AL+ F +G L Y + R
Sbjct: 184 DDLQLAPTLDWDTGFWEH-------------WQPGEAGALEALSVFEDGALRGYREQRDL 230
Query: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAG--DESVNLFLKSIGLREY 292
D TS LSPHLHFGE++ ++ H A EG ++ D ++ +L+ +G R++
Sbjct: 231 PDRVGTSRLSPHLHFGEIAPWRIAH---------ALEGLRSAGTDADIDGYLRQLGWRDF 281
Query: 293 SRYMSFNHPYSHERPLLGHLKFFSWVV-DEGYFKAWRQGRTGYPLVDAGMRELWATGWLH 351
+ ++ + P + L F W E AW++G TG P+VDAG+RELW TG++H
Sbjct: 282 AYHLLHHFPKTPTDNLNPRFDRFPWATPSEAQLHAWQRGNTGVPIVDAGLRELWHTGYMH 341
Query: 352 DRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDN 411
+R+R++V+S+ K L+ W G ++FWDTL+DADL ++ +GWQ+++GT D + R+ N
Sbjct: 342 NRVRMIVASYLCKHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFN 401
Query: 412 PQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAP 448
P + KFDP Y+ RW+PELA LP + PW P
Sbjct: 402 PVTQAEKFDPQARYISRWVPELAALPVKARFAPWQHP 438
>gi|407775677|ref|ZP_11122970.1| deoxyribodipyrimidine photo-lyase type I [Thalassospira
profundimaris WP0211]
gi|407281354|gb|EKF06917.1| deoxyribodipyrimidine photo-lyase type I [Thalassospira
profundimaris WP0211]
Length = 492
Score = 308 bits (788), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 178/495 (35%), Positives = 268/495 (54%), Gaps = 19/495 (3%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVR-----AGAVIAVFIWAPEEEGPYYPGRVSRWW 55
M+ R +++WFR DLR+ DNPAL A V+ GAV+ VFI ++ G ++WW
Sbjct: 1 MTERPIAVMWFRNDLRLADNPALLAAVKWAKENDGAVLPVFIL--DDVISDQLGGATKWW 58
Query: 56 LKHSLSHLDSSLRSLG---TSLVTKRSTDSVSSLLEVVKATGATQ-LFFNHLYDPLSLVR 111
L+ SL+ L+ ++ LG + + + ++LE + + + +F+N LYD S R
Sbjct: 59 LEKSLTALNRNIADLGDTKSDRALRLFKGNAKTVLETIADDKSVKAVFWNRLYDKPSTKR 118
Query: 112 DHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLP 171
D K AL G+ S A+LL+EPWDV F ++ FW CL +P P P
Sbjct: 119 DTEIKAALQNHGLTCESHKANLLFEPWDVKTGSDTDFKVYSPFWRACLKLP-TPREPKSA 177
Query: 172 PKRINSGDMSRCPSDTLVFEDESEKGSN--ALLARAWSPGWSNADKALTTFINGPLIEYS 229
P+ + + D S K N L +SPG A L FI+ L +Y+
Sbjct: 178 PESLALFKGEVDEQINIADFDLSPKPVNWAGGLEERFSPGEQGAKDQLFDFIDDRLTDYA 237
Query: 230 KNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGL 289
R + D TS LSPHL FGE+S +V+H + + N ++ + F+ +G
Sbjct: 238 DLRDRPDRRVTSELSPHLRFGEISPYQVWH-----AANHYADANPGKGKTASKFIAELGW 292
Query: 290 REYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGW 349
RE++ ++ ++ PL G K F W D +AW++G+TG+P+VDAGMRELW TG+
Sbjct: 293 REFAHHILYHATDLRSVPLQGQFKHFPWSDDAKGLRAWQKGQTGFPIVDAGMRELWHTGY 352
Query: 350 LHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRI 409
+H+R+R++V S VK L + WR G+ +F DTL+DA ++ WQ+I G D + RI
Sbjct: 353 MHNRVRMIVGSILVKHLLIHWRDGLAWFDDTLVDACPANNPFSWQWIGGCGADAAPYFRI 412
Query: 410 DNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVR 469
NP +G KFDP GEYVR+W+PEL +P ++IH PW A +L+AA + LG YP P++
Sbjct: 413 FNPVLQGEKFDPKGEYVRQWVPELRDMPEQYIHKPWEASPLILKAADVTLGKTYPEPLIG 472
Query: 470 IDAAKCRLDEALSEM 484
+ + R EA +M
Sbjct: 473 LKEGRERALEAYQDM 487
>gi|188992258|ref|YP_001904268.1| photolyase [Xanthomonas campestris pv. campestris str. B100]
gi|167734018|emb|CAP52224.1| Putative photolyase [Xanthomonas campestris pv. campestris]
Length = 520
Score = 308 bits (788), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 180/468 (38%), Positives = 266/468 (56%), Gaps = 23/468 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFRRDLR+EDNPAL A + AG I ++I AP EEG + PG SR W SL+ LD+
Sbjct: 52 AIVWFRRDLRLEDNPALRAALDAGHDPIPLYIDAPHEEGQWAPGAASRAWRHRSLAALDA 111
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SLR+ G++L+ R DS L V+ T A +++N Y+P + RD + K +L +G+
Sbjct: 112 SLRARGSALLI-RQGDSAQVLDAVIAQTEAVAVYWNRKYEPATQPRDAQIKRSLRERGLE 170
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLP---PKRINSGDMSR 182
V+S NA LL+EPW + QG P+ F FW L+ PDA P P S D
Sbjct: 171 VQSCNAALLFEPWTLATQQGGPYKVFTPFWRNALTQLRLPDAMPAPRSLPPLPASLDGVH 230
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+ L+ ++G W PG + A + L F++G L Y +NR + D TS
Sbjct: 231 VDALNLLPTPAWDQG----FWEHWQPGEAGAHEMLEIFVDGALSGYRENRDRPDRVGTSQ 286
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHLHFGE++ RI A + G + ++ +++ +G R+++ ++ + P
Sbjct: 287 LSPHLHFGEIAP------WRIASTLEAQRSARNGAD-IDGYIRQLGWRDFAYHLLHHFPD 339
Query: 303 SHERPLLGHLKFFSW-VVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ + L F W VD AW++GRTG P+VDAG+R+LW TGW+H+R+R++V+S
Sbjct: 340 TTTQNLNPRFAGFDWATVDPVTLDAWQRGRTGIPIVDAGLRQLWHTGWMHNRVRMIVASL 399
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L++ W G ++FWDTL+DADL ++ +GWQ+++GT D + R+ NP + KFDP
Sbjct: 400 LCKHLRVHWLEGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 459
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP-FPIV 468
Y+ RW+PELA LP + PW P S+ + L YP PI+
Sbjct: 460 QATYITRWIPELAALPVKERFAPWLHPLSLAR-----LAPTYPRAPII 502
>gi|209549047|ref|YP_002280964.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209534803|gb|ACI54738.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 483
Score = 307 bits (787), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 188/482 (39%), Positives = 259/482 (53%), Gaps = 24/482 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I+WFRRDLR++DN AL A +G +I V+I P G G WWL HSL LD S
Sbjct: 10 ILWFRRDLRLDDNQALNAAHLSGRPIIPVYINEPAAAGTGPLGAAQAWWLHHSLEALDRS 69
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L LV S D++ L V+K +GA +F+N YDP + D K+ L Q I
Sbjct: 70 LHERQGELVLA-SGDALEVLRAVIKKSGAEAVFWNRRYDPSGISVDTHIKQELEKQAIEA 128
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
RSF LL+EP + G P+ + FW + L + + PL P ++ R S+
Sbjct: 129 RSFGGQLLHEPSRLMTGNGTPYRVYTPFW-RALEGAGEAEPPLEAPAKLRLAS-QRPASE 186
Query: 187 TLV------FEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
TL + + KG A W+PG A + L+ F+ L Y +NR T
Sbjct: 187 TLKSWKLLPTKPDWAKG----FADLWTPGEQGARERLSAFVEDELKGYKENRDYPAKPAT 242
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSPHL GE+S +++ R N+ + F K I RE+S ++ F+
Sbjct: 243 SMLSPHLALGEISPARIWDATR-------GLSNRVPAADIVHFRKEIAWREFSYHLLFHF 295
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P F W D+G F+AWR+G TGYP+VDAGMR+LW GW+H+R+R++V+S
Sbjct: 296 PRLASENWNDRFDGFKWRNDDGDFEAWRRGMTGYPIVDAGMRQLWRHGWMHNRVRMIVAS 355
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F +K L + WR G +F DTL+DAD ++A WQ+++G+ D F RI NP +G FD
Sbjct: 356 FLIKDLMIDWRDGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPMLQGETFD 415
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P+G+YVR +PEL RL ++IH P+ AP+S L AGI LG YP PIV D A R D A
Sbjct: 416 PDGDYVRAHVPELQRLGAKYIHRPFEAPKSALDEAGIILGQTYPKPIV--DHASAR-DRA 472
Query: 481 LS 482
L+
Sbjct: 473 LA 474
>gi|221215267|ref|ZP_03588233.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Burkholderia
multivorans CGD1]
gi|221164951|gb|EED97431.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Burkholderia
multivorans CGD1]
Length = 554
Score = 307 bits (787), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 173/467 (37%), Positives = 264/467 (56%), Gaps = 18/467 (3%)
Query: 7 SIVWFRRDLRVEDNPAL-AAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IV FRRDLR+ D+PAL AA R AV+ V++ AP+E+ + PG SRWWL HSL+ LD
Sbjct: 82 AIVLFRRDLRLSDHPALSAACARHDAVLPVYVHAPDEDTAWAPGAASRWWLHHSLTSLDR 141
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LR G L +++ + + +A GA +++ Y+P ++ D K L A+GIA
Sbjct: 142 ALRQQGAQLHVMEGDPTIAVPM-LARAVGAQAVYWTRRYEPTAIACDTALKTTLRAEGIA 200
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDA-PLLPPKRINSGDMSRCP 184
S L EPW + GQP+ F FW K + D P P+R + D S P
Sbjct: 201 AHSHPGALWQEPWTLTTEAGQPYRVFTPFWRKLRTSLSDCHPLPAARPRRWLTADGS-IP 259
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
D + +A LA AW PG + A + L F++ L EY R TS LS
Sbjct: 260 IDAIGLLPPIRW--DAGLAEAWRPGEAGAWERLEQFVDEALAEYGDARDAPARMGTSRLS 317
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
HLHFGE++ ++ ++ ++V+ ++ ++ E FL+ +G RE++ ++ ++ P++
Sbjct: 318 AHLHFGEITPTQMLRTLQ-ERVARTSDSDRPDLEP---FLRELGWREFAHHLLYHFPHTT 373
Query: 305 ERPLLGHLKFFSWVVDEG-YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
+ F+W D+ W+QGRTG PLVDAGMR+LW TGW+H+R+R+ V+SF
Sbjct: 374 DANFDARFDTFAWAPDDDDQLARWQQGRTGIPLVDAGMRQLWQTGWMHNRVRMAVASFLT 433
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L+ WR G ++FWDTL+DADL ++ LGWQ+++G D + R+ NP + +FDP+
Sbjct: 434 KNLRQHWRHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPYLQAARFDPDA 493
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRI 470
Y++RWLPEL+ LP + +H PW P + L G YP P++ +
Sbjct: 494 AYLKRWLPELSGLPADVLHRPWKHP-AALAVCG------YPAPMIDL 533
>gi|408785938|ref|ZP_11197678.1| deoxyribodipyrimidine photo-lyase [Rhizobium lupini HPC(L)]
gi|408488127|gb|EKJ96441.1| deoxyribodipyrimidine photo-lyase [Rhizobium lupini HPC(L)]
Length = 479
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 187/472 (39%), Positives = 262/472 (55%), Gaps = 16/472 (3%)
Query: 8 IVWFRRDLRVEDNPAL-AAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
IVWFR+DLR+ DN AL AA G VI V+I E+ GR WWL HSL+ L ++
Sbjct: 9 IVWFRKDLRLSDNLALLAAADHKGPVIPVYI---REKCCGALGRAQEWWLHHSLTALHAA 65
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L+ G+ LV S D+ L ++ TGA +F+N YDP + D K AL +G+ V
Sbjct: 66 LKKTGSRLVLA-SGDAEEVLRRLIAETGADTVFWNRRYDPEGISTDKTLKRALRDEGLTV 124
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
RSF+ LL+EP + G P+ + FW + L +P AP P R+N+ + S+
Sbjct: 125 RSFSGHLLHEPSKLQTKSGGPYRVYTPFW-RALEGGEEPHAPADAPDRLNT-PRNWPRSE 182
Query: 187 TLVFEDESEKGSNAL--LARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
TL K + + W+PG A + L+ FI+G L Y + R TS LS
Sbjct: 183 TLDEWQLLPKRPDWAREFSDIWTPGEDGAREKLSDFIDGALKGYEEGRDLPAKDATSRLS 242
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
PHL GE+S V+H + ++ F K I RE+ ++ F+ P
Sbjct: 243 PHLALGEISPATVWHATK-------GLSRHIASNDISRFRKEIVWREFCYHLLFHFPELD 295
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
E+ FSW D+ F AW +G TGYP+VDAGMR+LW G +H+R+R++V+SF +K
Sbjct: 296 EKNWNDSFDAFSWRDDDKSFTAWTRGMTGYPIVDAGMRQLWRHGTMHNRVRMIVASFLIK 355
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L + WR G K+F DTL+DAD S+A WQ+++G+ D F RI NP +G KFD +G+
Sbjct: 356 HLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPILQGEKFDGDGD 415
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
YVRR++PELARL ++IH P+ AP+ VL AGI LG YP P+V A+ R
Sbjct: 416 YVRRFVPELARLERKYIHKPFEAPKEVLTKAGITLGETYPNPVVDHGRARER 467
>gi|148256271|ref|YP_001240856.1| deoxyribodipyrimidine photo-lyase type I [Bradyrhizobium sp. BTAi1]
gi|146408444|gb|ABQ36950.1| deoxyribodipyrimidine photo-lyase type I [Bradyrhizobium sp. BTAi1]
Length = 481
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 177/463 (38%), Positives = 253/463 (54%), Gaps = 10/463 (2%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFR LR+ D+PAL A +GA VI +++ E G SRWWL SL L
Sbjct: 7 VVWFRESLRLSDHPALHAAATSGAPVICCYVYDTESAALRPLGGASRWWLAQSLRALQDE 66
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L +LG LV +R S ++ E+ + + +++N + + AL A G+
Sbjct: 67 LDALGVKLVIRRGP-SAKAISELAREASTSAVYWNDVAQTGPRAVAAEVEAALDAIGVKS 125
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS-GDMSRCPS 185
R F DLL +P ++ G+ F FW++ L++ DP PL P R++S ++
Sbjct: 126 RVFADDLLIDPAELRGKDGRGPRVFTPFWKRVLAL-GDPPKPLPVPVRLSSPSGVASLTV 184
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
D L E S + L W G A L F+ + Y+ +R + D TS LSP
Sbjct: 185 DKLALEPTSPDWAGGLRT-TWRAGERAAQARLAKFLETTVRGYAADRDRPDIEATSRLSP 243
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
HL FGE+S R+++H R A E A ++ FL +G RE+SR++ FN+P
Sbjct: 244 HLRFGEISPRQIWHAARF-----AAEQQPAFARGIDKFLSELGWREFSRHLLFNNPDLAT 298
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
R L F W D +AW++G+TGYP+VDAGMRELW TG +H+R+R+V +S VK
Sbjct: 299 RNLQPSFDAFPWSQDAAALRAWQRGQTGYPIVDAGMRELWHTGSMHNRVRMVAASLLVKH 358
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
L + WR G ++FWDTL+DAD S+ WQ+++G+ D + R+ NP +G KFD +G Y
Sbjct: 359 LLIDWRLGEQWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPVLQGEKFDSSGTY 418
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
VRRW+PELARLP IH PW A L AG+ LG +YP P+V
Sbjct: 419 VRRWVPELARLPAALIHQPWAAKPLELAEAGVVLGRSYPAPVV 461
>gi|414167272|ref|ZP_11423501.1| hypothetical protein HMPREF9696_01356 [Afipia clevelandensis ATCC
49720]
gi|410891089|gb|EKS38887.1| hypothetical protein HMPREF9696_01356 [Afipia clevelandensis ATCC
49720]
Length = 488
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 185/469 (39%), Positives = 254/469 (54%), Gaps = 17/469 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYP------GRVSRWWLKHSLS 61
IVWFR DLR+ D+PAL A A + + EE P G SRWWL SL
Sbjct: 10 IVWFRDDLRLSDHPALHAAAETDAPLVLLYVLDEESTSLRPPRGRAIGSASRWWLAQSLR 69
Query: 62 HLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTA 121
L +SL + G +LV RS + + ++ + A + + P + AL
Sbjct: 70 SLQASLAARGQTLVL-RSGAAARVISDLAQDIEAASVHWIESDVPSQSAVERDVTAALKE 128
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMS 181
G+ R F DLL +P + + +G+ F FW++ LS+ DP PL PK++ G
Sbjct: 129 IGVQARGFPGDLLVKPASLRNKEGRGLRVFTPFWKRVLSL-GDPPQPLPVPKKLKPGPA- 186
Query: 182 RCPSDTLVFEDESEKGSN--ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
SD L + K + L W+PG S A L F+ + Y+ R + D
Sbjct: 187 -VASDDLASWNLEPKHPDWAGGLRDTWTPGESAAQTRLHDFLETGIKGYATLRDRPDRDG 245
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSPHL FGE+S R+V+H A + + A D V FL +G RE+SR++ F+
Sbjct: 246 TSRLSPHLRFGEISPRQVWHAANFAA---AQKPDIASD--VGKFLSELGWREFSRHLLFD 300
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P E+ L F W D +AW++GRTGYP+VDAGMRELW TG +H+R+R+VV+
Sbjct: 301 LPDLAEKNLQSSFDAFPWRRDAKALRAWQRGRTGYPIVDAGMRELWHTGVMHNRVRMVVA 360
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L + WR G K+FWDTL+DAD S+ WQ+++G+ D + R+ NP +G KF
Sbjct: 361 SFLVKHLLIDWRHGEKWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPVLQGEKF 420
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
DP+G YV RW+PELARL + IH PW A L AAG+ LG NYP P+V
Sbjct: 421 DPDGAYVSRWVPELARLSAKLIHQPWEATPMELAAAGVTLGENYPEPMV 469
>gi|254292413|ref|YP_003058436.1| deoxyribodipyrimidine photo-lyase [Hirschia baltica ATCC 49814]
gi|254040944|gb|ACT57739.1| Deoxyribodipyrimidine photo-lyase [Hirschia baltica ATCC 49814]
Length = 475
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 180/482 (37%), Positives = 260/482 (53%), Gaps = 14/482 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYP-GRVSRWWLKHSLSHLDS 65
++ WFR+DLR+ DNPAL + + + IA+FI EE P G + WL SL L S
Sbjct: 2 NLCWFRQDLRLSDNPALRSALSDNSAIALFI--LEETDTQRPMGSACKAWLHESLIRLQS 59
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L ++G LV +R D+ + ++ +++N YDP + D E L +G+
Sbjct: 60 DLEAIGVPLVLRRG-DARDIIPKLTSDLKIDNVYWNRRYDPKDVAIDRALMEHLKEEGVN 118
Query: 126 VRSFNADLLYEPWDVNDA-QGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V SF A++L+EPW++ A G P+ F+ FW+ L + +P K + + + P
Sbjct: 119 VESFKANVLFEPWEIKSAGAGTPYKVFSPFWKAALKEGVPAQSLAVPTKIQSKPQLDQLP 178
Query: 185 SDTLVFEDESEKGSNAL--LARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
D L D N W PG + A + F+ L YS+NR TS
Sbjct: 179 FDNLEDWDLMPASPNWTNGFWDVWVPGEAGAFERFKEFLEINLKGYSQNRDVPSKNHTSC 238
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHL FGE+S +++H V A+ G + D+ FL +G RE+S + F
Sbjct: 239 LSPHLRFGEISPLQIWHGVH------AHSGGEV-DKDGYKFLAEVGWREFSHSILFYADN 291
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ F+WV DE AW+ G+TGYPLVDAGMRELW TG++H+R+R+VV+SF
Sbjct: 292 LSQTNWKSDFDGFAWVQDENGLTAWQSGQTGYPLVDAGMRELWQTGYIHNRVRMVVASFL 351
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
+K L++ WR G +FWDTL+DA ++ WQ+++G+ D F RI NP + KFDP
Sbjct: 352 IKHLRIDWREGEAWFWDTLVDACPANNPASWQWVAGSGADASPFFRIFNPIMQSEKFDPK 411
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
G Y+R+W+PELA L + IH PW AP+ VLQ G+ LG NYP PIV A+ + A
Sbjct: 412 GSYIRKWVPELANLDNKSIHTPWEAPKLVLQEVGVRLGENYPKPIVDHKTARDKALAAYK 471
Query: 483 EM 484
+M
Sbjct: 472 DM 473
>gi|384045337|ref|YP_005493354.1| Deoxyribodipyrimidine photolyase family protein [Bacillus
megaterium WSH-002]
gi|345443028|gb|AEN88045.1| Deoxyribodipyrimidine photolyase family protein [Bacillus
megaterium WSH-002]
Length = 475
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 166/494 (33%), Positives = 262/494 (53%), Gaps = 34/494 (6%)
Query: 4 RGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHL 63
+ IVW R+D R+ DNPAL + G V+ V+I +EE G S+WWL H+L+
Sbjct: 2 KKTIIVWIRKDFRLVDNPALFHAAKEGMVVPVYIHDDDEESSM--GSASKWWLHHALNDF 59
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
+S+ + +L+ K+ + L +++ T A +++N Y+P +L RD + + Q
Sbjct: 60 KTSIEKIEGTLIIKKG-NPKDVLQKLIHETNAQDIYWNRRYEPHALKRDKELQAFFSEQQ 118
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS------ 177
I +R+F LL+EPW + G P+ F A+++ K++ S
Sbjct: 119 INIRTFEGFLLHEPWKITKENGDPYKVFTAYYKASQKHAVSSTV-----KKVTSIHAFSS 173
Query: 178 -------GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSK 230
D+ PS + DE+ K + W A + TF+ L+ Y K
Sbjct: 174 SIESLSVSDLDLLPS---IPWDETIKST-------WDATEQGAINSFKTFLKNKLLHYEK 223
Query: 231 NRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLR 290
R A SFLSP+ G++S R ++H +R K + A + +F++ + R
Sbjct: 224 GRDFPAEAFNSFLSPYFASGQLSARVLYHYLRNKA---EKVSSNAFEHQTEMFIRQLVWR 280
Query: 291 EYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWL 350
+++ + ++ P++ PL K F W +AW+ G+TGYPLVDAGMRELW TG++
Sbjct: 281 DFAYQLLYHFPHTTSEPLNEKFKQFQWADGNEELQAWKNGKTGYPLVDAGMRELWETGFM 340
Query: 351 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRID 410
H+R+R+V +SF VK L + W+ G +F+DTL+DADL ++ +GWQ+I+G+ D + RI
Sbjct: 341 HNRVRMVAASFLVKHLLIHWKHGANWFFDTLVDADLANNTMGWQWIAGSGADAAPYFRIF 400
Query: 411 NPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRI 470
NP + KFD GEY+++WLPEL LP+ +IH PW AP VL+ A + L YP PIV
Sbjct: 401 NPTAQSEKFDKEGEYIKKWLPELRDLPSSYIHKPWEAPADVLEKANVTLDKTYPTPIVDH 460
Query: 471 DAAKCRLDEALSEM 484
AA+ R E ++
Sbjct: 461 KAARERALEHYQDI 474
>gi|398826896|ref|ZP_10585124.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. YR681]
gi|398219708|gb|EJN06173.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. YR681]
Length = 508
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 182/472 (38%), Positives = 263/472 (55%), Gaps = 16/472 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IVWFR DLR+ D+PAL A + GA + V ++ ++ PG +RWWL SL L + +
Sbjct: 37 IVWFRDDLRLSDHPALHAAAKTGAPV-VCLYVLDDAAGRAPGGAARWWLAQSLRTLGAEI 95
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+ G SL+ ++ + + EVV+ +GA+ +++N + + + + AL G+ +
Sbjct: 96 AARGGSLILRKGP-AARVVAEVVRESGASAVYWNGIAQAPHQAVERQLEAALAKLGVDSQ 154
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
SF DLL P + + +G+ F FW + L++ DP PL PK++ +G SDT
Sbjct: 155 SFLGDLLVPPSAIRNKEGRGLRVFTPFWRRVLAL-GDPPKPLPAPKQLRAG--PNIASDT 211
Query: 188 L---VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
L E + + L +W+PG ++A L F+ Y +R + D TS LS
Sbjct: 212 LESWALEPTTPDWAGGL-RESWTPGEASARARLRDFLKTIARSYVGDRDRPDREGTSRLS 270
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
PHL FGE+S R+VFH R A N A + FL +G RE+ R++ +HP
Sbjct: 271 PHLRFGELSPRQVFHAARF-----AAAENPALGPGIEKFLSELGWREFCRHLLHDHPGLA 325
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
L + F W D AW++G TGYP+VDAG+RELW TG +H+R+R+VV+SF VK
Sbjct: 326 TENLQANFDGFPWKGDTKALTAWQRGATGYPIVDAGLRELWHTGVMHNRVRMVVASFLVK 385
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L + WR G +FWDTL+DAD S+ WQ+++G D + R+ NP +G KFDP+G
Sbjct: 386 HLLIDWRDGEAWFWDTLVDADAGSNPANWQWVAGCGADAAPYFRVFNPILQGEKFDPDGT 445
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
YVRRW+PEL LP + IH PW A L +AG+ LG YP PI ID AK R
Sbjct: 446 YVRRWVPELKDLPAKLIHQPWQATPIELASAGVTLGKTYPQPI--IDHAKGR 495
>gi|255022161|ref|ZP_05294164.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
51756]
gi|340782929|ref|YP_004749536.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus SM-1]
gi|254968425|gb|EET25984.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus ATCC
51756]
gi|340557080|gb|AEK58834.1| Deoxyribodipyrimidine photolyase [Acidithiobacillus caldus SM-1]
Length = 476
Score = 306 bits (785), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 179/471 (38%), Positives = 261/471 (55%), Gaps = 27/471 (5%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IV FR DLR+ D+PAL + G V+ V++ Y G RWW SL L +
Sbjct: 5 TTIVLFRNDLRLADHPALWYAAQRGPVLPVYL---RHAADSY-GSAWRWWHGESLLKLQA 60
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L G L+ RS + + L E+V+A+GA +++N YD + D K G+
Sbjct: 61 ALAQRGLPLLL-RSGTAKAVLPEIVRASGADAVYWNRRYDRDGIAEDQELKSLFKELGVE 119
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
RSF +LL EPW+ + +GQP+ F FW+ L+ P PL P + R P+
Sbjct: 120 ARSFPGNLLVEPWE-HLREGQPYRVFTPFWKAMLARHRFPQ-PLAEP------ESYRAPT 171
Query: 186 DTLVFEDESEKGSNAL-------LARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
ED + G + LAR W G A + L F++ L Y++ R
Sbjct: 172 AIPASEDLARWGWHPHHPDWSIGLARHWEVGEEAAWRRLRDFVDEGLAHYAEGRNLPGKP 231
Query: 239 TTSFLSPHLHFGEVSVRKVF-HLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
S LSP+L GE+S R+++ HL R+ E A +V+ FL+ +G RE+S ++
Sbjct: 232 FVSRLSPYLAHGEISPRQIWWHLSRLA------EEQGAWRRNVDAFLRELGWREFSWHLL 285
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
++ P PL + F W D +AW + RTGYP++DAGMRELW +GW+H+R+R++
Sbjct: 286 YHFPDLPREPLRPEFQRFPWRQDPAALRAWTRARTGYPIIDAGMRELWESGWMHNRVRMI 345
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V+SF VK L++PW+ G +FWDTL+DADL +++ WQ+++G D + R+ NP +
Sbjct: 346 VASFLVKDLRIPWQEGEAWFWDTLVDADLANNSASWQWVAGCGADAAPYFRVFNPVLQAQ 405
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
KFDP G+YVRRWLP+L RLP + IH PW AP VL+ AGI LG YP P+V
Sbjct: 406 KFDPQGDYVRRWLPQLQRLPADHIHAPWQAPAVVLEQAGIALGKEYPRPLV 456
>gi|88705106|ref|ZP_01102818.1| Deoxyribodipyrimidine photo-lyase [Congregibacter litoralis KT71]
gi|88700801|gb|EAQ97908.1| Deoxyribodipyrimidine photo-lyase [Congregibacter litoralis KT71]
Length = 482
Score = 306 bits (784), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 174/462 (37%), Positives = 255/462 (55%), Gaps = 10/462 (2%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I+WFR+DLR+ D PAL A R G V+ ++I+ + G + G SRWWL HSLS L
Sbjct: 6 ILWFRQDLRLNDLPALQAASRDGRRVLPLYIFDEDSPGDWVMGGASRWWLHHSLSALARD 65
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
+ G L+ +R S L ++ K+T AT ++ + Y+P + + E L I
Sbjct: 66 IEDQGGKLIFRRGK-SREVLGDICKSTDATAVYCSRRYEPWASEEEKMLHEDLGNSDIDF 124
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
+ + LL+EP +V G P+ F FW CL + D P+ P S D
Sbjct: 125 KRYGGTLLHEPGNVMTQSGGPYKVFTPFWRACLEL--DRAEPVPVPDVTWSTFTKSDALD 182
Query: 187 TLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPH 246
S + A W+PG A + L F+ + Y+ R +S LSPH
Sbjct: 183 DWQLRPTSPNWA-ASWEEYWTPGEDGAQQRLHDFLEESVSRYADERDFPAEEVSSRLSPH 241
Query: 247 LHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHER 306
LH GE+S R+V+ + K++ A ++++ F IG RE+S ++ P E+
Sbjct: 242 LHHGELSPRQVWAMCEQKKLE-----TPASEKAIKKFQAEIGWREFSYHLLHFFPEIPEK 296
Query: 307 PLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVL 366
+ F W D+ + W+QG+TGYP+VDAGMRELWATG +H+RIR+VV+SF K L
Sbjct: 297 AFKENFADFPWQPDKTRLERWQQGQTGYPIVDAGMRELWATGTMHNRIRMVVASFLCKHL 356
Query: 367 QLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYV 426
WR G +FWDTL+DAD+ S+ WQ+++G+ D + RI NP +G KFD +G+YV
Sbjct: 357 LQHWRSGEDWFWDTLVDADMASNGCSWQWVAGSGADAAPYFRIFNPITQGEKFDKHGDYV 416
Query: 427 RRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
R+W+PE+ARLP +++H PW A + L+ AGI+LGS+YP PIV
Sbjct: 417 RQWVPEIARLPNKYLHKPWEASKEALEEAGIKLGSDYPEPIV 458
>gi|350552515|ref|ZP_08921715.1| DNA photolyase FAD-binding [Thiorhodospira sibirica ATCC 700588]
gi|349794054|gb|EGZ47877.1| DNA photolyase FAD-binding [Thiorhodospira sibirica ATCC 700588]
Length = 480
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 171/446 (38%), Positives = 253/446 (56%), Gaps = 20/446 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+ WF RDLR+ D+PAL + +G VI V++ A EE P+ PG SRWWL HSLS L
Sbjct: 5 LCWFSRDLRLADHPALYHALHSGLPVIPVYLHAQHEEAPWAPGAASRWWLHHSLSALMHD 64
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L + + LV R DS++ LL +V+ TGA Q+ +N Y+P RD + AL G+AV
Sbjct: 65 LERINSRLVI-RQGDSLAQLLSLVRETGAVQVVWNRRYEPHLQQRDQQVATALQQYGVAV 123
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCL----SMPFDP-DAPLLPPKRINSGDMS 181
FNA + + P + A G+P+ F FW++CL + P P A LL P + D
Sbjct: 124 HQFNATVWFAPGTLCKADGEPYRVFTPFWKRCLQTGLARPCLPRPASLLAPS--HWPDSL 181
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
+ L+ ++G A +W+PG + A L F+ P+ Y++ R T+
Sbjct: 182 ELAALDLLPRQPWDQGLKA----SWTPGEAGAWHRLHDFLKEPVKHYAQGRDYPAQPGTA 237
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LS HLHFGE+S ++ + ++G A + F++ +G RE++ ++ + P
Sbjct: 238 RLSAHLHFGEISPGQIHAACQ----PLLDQG--AAHSGIESFIRELGWREFAHHILHHFP 291
Query: 302 YSHERPLLGHLKFFSWV-VDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
+ + PL F W D+ W+QG+TG PLVDAGMRELW TGW+H+R+R++ +S
Sbjct: 292 RTPQLPLYPKFADFPWADCDDPALTRWQQGQTGIPLVDAGMRELWHTGWMHNRVRMICAS 351
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L++ WR G ++FWDTL+DADL S+ LGWQ+ +G D F R+ NP +G +FD
Sbjct: 352 FLTKNLKIHWRCGARWFWDTLVDADLASNTLGWQWTAGCGADAAPFFRVFNPVLQGQRFD 411
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWN 446
P GEYV R++PEL +P ++ H PW
Sbjct: 412 PKGEYVTRFVPELRTIPLKYRHQPWQ 437
>gi|449017555|dbj|BAM80957.1| probable cryptochrome [Cyanidioschyzon merolae strain 10D]
Length = 1225
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 191/514 (37%), Positives = 270/514 (52%), Gaps = 49/514 (9%)
Query: 2 SGRGCSIVWFR-RDLRVEDNPALAAGV-RAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHS 59
S R S+VW+R DLRVED PAL A V R G V+ VFIWAPEE+G + GR +RWWL S
Sbjct: 3 SSRRPSVVWYRGHDLRVEDMPALLAAVQRGGPVVPVFIWAPEEDGMWCLGRPARWWLSRS 62
Query: 60 LSHLDSSLRSLG--TSLVTKRSTDSV-------SSLLEVVKATGATQLFFNHLYDPLSLV 110
+ LD LR LG T L+ +R+ ++LLEVVK GA +++N +YDP+ L
Sbjct: 63 IVALDRRLRELGCETGLILRRAKSESGGGGGVETTLLEVVKRCGAEAVYWNRVYDPVVLR 122
Query: 111 RDHRAKEALTAQG-IAVRSFNADLLYEPWDVNDAQGQP-------FATFAAFWEKCLSMP 162
RD + + +AV SF A+LL EPW+V + +P TF F ++MP
Sbjct: 123 RDEEVRRRWSKHHRLAVESFKAELLVEPWEVCATESRPASFGDRPLDTFHEFMSAWMAMP 182
Query: 163 FDPDA--------PLLPPKRINSGDMSRCPSDTLVFED--ESEKGSN------------- 199
P+ PL+ + + G + P T+ D +S G +
Sbjct: 183 PPPEPLPAPKRIEPLIASQSGDQGPLFAVPESTMQPSDVLQSPGGEDTDTEMGIWWNQIH 242
Query: 200 --ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD-SATTSFLSPHLHFGEVSVRK 256
L W PG + L F+ Y RR+ TS LSP+L FGE+S R+
Sbjct: 243 NLGSLEEYWRPGVDCVAERLQDFLTSVFPTYGDARRRQRLRNGTSRLSPYLRFGELSPRR 302
Query: 257 VFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFS 316
++H VR + +E + A + L+++ LREY+ +M F P +RPL+ F
Sbjct: 303 LYHAVRASVLQ--SEPSDAIIRAARTLLRNLCLREYAYHMLFYRPSILDRPLVPEFDHFP 360
Query: 317 WVVDE--GYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGM 374
++ + W GRTGYPLVDA MREL TGWLH +R +V+SFF K L LPW+ G
Sbjct: 361 CTKEDVGRLLEVWLSGRTGYPLVDAAMRELHHTGWLHSNLRFLVASFFTKYLLLPWQIGA 420
Query: 375 KYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELA 434
+ + +D DL S+A+ WQ+++G D + + NP G + DP GEYVR W PEL
Sbjct: 421 RCLFKLFIDGDLASNAICWQWVTGCNYDVFPLNCLVNPVVMGMRVDPEGEYVRTWCPELQ 480
Query: 435 RLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
++P+ +IH W P ++L A +ELG YP P+V
Sbjct: 481 QIPSSYIHAVWKCPPTILHQARVELGVTYPRPVV 514
>gi|261047494|gb|ACX54506.1| cryptochrome 1 [Capsella bursa-pastoris]
Length = 162
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 152/162 (93%), Positives = 157/162 (96%)
Query: 268 WANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAW 327
WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHERPLLGHLKFF W VDE YFKAW
Sbjct: 1 WANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAW 60
Query: 328 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 387
RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE
Sbjct: 61 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120
Query: 388 SDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRW 429
SDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVRRW
Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRW 162
>gi|114707205|ref|ZP_01440103.1| DNA photolyase [Fulvimarina pelagi HTCC2506]
gi|114537401|gb|EAU40527.1| DNA photolyase [Fulvimarina pelagi HTCC2506]
Length = 492
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 174/482 (36%), Positives = 262/482 (54%), Gaps = 10/482 (2%)
Query: 5 GCSIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHL 63
G +VW R DLR++DNPALA ++ + + E +G G +WWL HSL
Sbjct: 17 GPIVVWLRDDLRLDDNPALALAAETNRPIVPLVVLDEESDGVRALGGAHKWWLHHSLESF 76
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
SSLR G+ L +R + +L+V++ TGA+ LFFN YD S D EAL Q
Sbjct: 77 ASSLRGKGSRLTLRRGK-AKDQVLDVIEKTGASALFFNRRYDQASRAVDDAIGEALGDQ- 134
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
++V F A+LL++P +V G + F FW K P P+ PP + D
Sbjct: 135 VSVERFTANLLHDPENVETTSGGYYKVFTPFWRKVSES--GPRDPIDPPDGLKQPDTFPQ 192
Query: 184 PSDTLVFEDESEKGS-NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
D +E K + +A W+PG A TF + L +Y K R + + TS
Sbjct: 193 SDDLEDWELLPTKPDWSGGIADFWTPGEKAAHDRFETFCDDLLSDYHKGRERPYADDTSR 252
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
+SP+L +GE+S +++H + ++AN DE++ FL+ + R+++ ++ F+
Sbjct: 253 MSPYLRWGEISPYRLWHTAQ----AYANRRKTVPDEAIRTFLQELVWRDFNYHLLFHFGP 308
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
++ FSW + KAW+ G TGYP+VDAGMR+LW TGW+H+R+R++V SF
Sbjct: 309 LADKNFNDRFDNFSWRSSKKDLKAWQNGLTGYPIVDAGMRQLWKTGWMHNRVRMIVGSFL 368
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
K L + WR G ++FWDTL+D D+ S+ WQ+I G D + F RI NP + +FD N
Sbjct: 369 TKDLLIDWRDGERWFWDTLVDGDIASNTAQWQWIGGAGADAQPFFRIFNPITQSERFDKN 428
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
G Y+R+++PEL +P + IH PW A + VL+ AG++LG YP P+V A+ R A
Sbjct: 429 GAYIRQFVPELKEMPDKHIHAPWKADKDVLEKAGVKLGETYPEPLVDHSEARDRALSAYD 488
Query: 483 EM 484
E+
Sbjct: 489 EV 490
>gi|115525443|ref|YP_782354.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
BisA53]
gi|115519390|gb|ABJ07374.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
palustris BisA53]
Length = 483
Score = 306 bits (783), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 179/466 (38%), Positives = 256/466 (54%), Gaps = 14/466 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S+VWFR DLR+ D+PAL A +G V+ +++ + G G +RWWL SL L
Sbjct: 9 SLVWFRDDLRLSDHPALNAAASSGRPVLCLYVLDEQSPGGRPLGGAARWWLAQSLRSLQQ 68
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L G +L+ +R + + + + T A +++N + + L GIA
Sbjct: 69 ILSERGATLMLRRGA-AAQVVAGLARETNAEVVYYNDIAMAPARTVAAELAATLADHGIA 127
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
V DLL P + +G+ F FW++ LS+ DP PL P + G S
Sbjct: 128 VHQHPGDLLAAPETIRTKEGRGLRVFTPFWKRVLSL-GDPAKPLPAPTAL--GPPPAAAS 184
Query: 186 DTL---VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
D L E + + L A AW PG + A +ALT F+ + Y+ +R + D TS
Sbjct: 185 DRLDDWALEPTAPDWAGGLRA-AWQPGEAAAQRALTDFLTTGIAGYAGDRDRPDRPGTSL 243
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHL FGE+ R+++H R + AGD V+ FL +G RE+ R++ F+H
Sbjct: 244 LSPHLRFGEIGPRQIWHAARFAAAA---RPAIAGD--VDKFLSELGWREFCRHLLFDHSD 298
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
R L F WV D +AW++G TGYP+VDAGMR+LW TG +H+R+R+VV+SF
Sbjct: 299 LATRNLQPAFDAFPWVEDPAGLRAWQRGLTGYPIVDAGMRQLWQTGVMHNRVRMVVASFL 358
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L + WR G ++FWDTL+DAD S+ WQ+++G D + R+ NP +G KFDP+
Sbjct: 359 VKHLLIDWRCGEQWFWDTLVDADAGSNPGNWQWVAGCGADAAPYFRVFNPILQGEKFDPD 418
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
G YVRR++PELARLP IH PW A L +AG++LG NYP PI+
Sbjct: 419 GAYVRRFVPELARLPAALIHQPWTATPLELASAGVQLGHNYPEPII 464
>gi|384427365|ref|YP_005636723.1| photolyase [Xanthomonas campestris pv. raphani 756C]
gi|341936466|gb|AEL06605.1| photolyase [Xanthomonas campestris pv. raphani 756C]
Length = 472
Score = 305 bits (782), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 178/468 (38%), Positives = 268/468 (57%), Gaps = 23/468 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFRRDLR+EDNPAL A + AG I ++I AP EEG + PG SR W SL+ LD+
Sbjct: 4 AIVWFRRDLRLEDNPALRAALDAGHDPIPLYIDAPHEEGQWAPGAASRAWRHRSLAALDA 63
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SLR+ G++L+ R DS L V+ T A +++N Y+P + RD + K +L +G+
Sbjct: 64 SLRARGSALLI-RQGDSAQVLDAVIAQTEAVAVYWNRKYEPATQPRDAQIKRSLRERGLE 122
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLP---PKRINSGDMSR 182
V+S NA LL+EPW + QG P+ F FW L+ PDA P P S D
Sbjct: 123 VQSCNAALLFEPWTLATQQGGPYKVFTPFWRNALTQLRLPDAMPAPRSLPPLPASLDGVH 182
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+ LV ++G W PG + A + L F++G L Y +NR + D TS
Sbjct: 183 VDALNLVPAPAWDRG----FWEHWQPGEAGAHEMLEIFVDGALSGYRENRDRPDRVGTSQ 238
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHLHFGE++ ++ + ++ + + G E ++ +++ +G R+++ ++ + P
Sbjct: 239 LSPHLHFGEIAPWRIASTLEAQRTA------RNGAE-IDGYIRQLGWRDFAYHLLHHFPD 291
Query: 303 SHERPLLGHLKFFSW-VVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ + L F W VD AW++GRTG P+VDAG+R+LW TGW+H+R+R++V+S
Sbjct: 292 TTTQNLNPRFAGFDWATVDPVTLDAWQRGRTGIPIVDAGLRQLWHTGWMHNRVRMIVASL 351
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L++ W G ++FWDTL+DADL ++ +GWQ+++GT D + R+ NP + KFDP
Sbjct: 352 LCKHLRVHWLEGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 411
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP-FPIV 468
Y+ RW+PELA L + PW P S+ + L YP PI+
Sbjct: 412 QATYITRWIPELAALRVKERFAPWLHPLSLAR-----LAPTYPRAPII 454
>gi|90424846|ref|YP_533216.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
BisB18]
gi|90106860|gb|ABD88897.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
palustris BisB18]
Length = 483
Score = 305 bits (782), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 184/467 (39%), Positives = 257/467 (55%), Gaps = 16/467 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S+VWFR DLR+ D+PAL R+GA V+ +++ E G G +RWWL SL L +
Sbjct: 9 SLVWFRDDLRLSDHPALDDAGRSGAAVVCLYVLDEESAGLRPLGGAARWWLAQSLRSLSA 68
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYD-PLSLVRDHRAKEALTAQGI 124
L + G L+ +R + + EV + GA ++ +N + + P V D A L G+
Sbjct: 69 DLAARGGVLILRRGP-AARIVAEVAREAGAVRVSWNDVPNRPARAVADDLAAR-LGDLGV 126
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
A + DLL P V QG+ F FW++ L++ DP PL PK + S +
Sbjct: 127 AAQCCPGDLLAAPATVRTQQGRGLRVFTPFWKRVLAL-GDPPQPLTAPKALCS--VPSLA 183
Query: 185 SDTL---VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
SDTL E + L AR W PG + A + L F++G + Y+ R + D TS
Sbjct: 184 SDTLDDWKLEPTRPDWAGGLRAR-WQPGEAAAQRGLQHFLHGAIAGYATERDRPDRVATS 242
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSPHL FGE+S R+V+H R A V+ FL +G RE+ R++ F++P
Sbjct: 243 TLSPHLRFGEISPRQVWHAARFAAAE-----RPAIAADVDKFLSELGWREFCRHLLFDNP 297
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
R L F W D +AW++GRTGYPLVDAGMREL TG +H+R+R+V +SF
Sbjct: 298 DLATRNLQPAFDRFPWTTDPIALRAWQRGRTGYPLVDAGMRELRLTGVMHNRVRMVAASF 357
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L L WR G +FWDTL+DAD S+ WQ+++G D + R+ NP +G +FD
Sbjct: 358 LVKHLLLDWRCGEAWFWDTLVDADPASNPANWQWVAGCGADAAPYFRVFNPILQGERFDA 417
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
G+YVRR++PE+A L + IH PW A L+AAG+ LG YP PIV
Sbjct: 418 EGDYVRRFIPEIAGLSNKSIHQPWTATPLELEAAGVTLGDTYPNPIV 464
>gi|306019717|gb|ADM78912.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019719|gb|ADM78913.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019721|gb|ADM78914.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019723|gb|ADM78915.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019725|gb|ADM78916.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019727|gb|ADM78917.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019729|gb|ADM78918.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019731|gb|ADM78919.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019733|gb|ADM78920.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019735|gb|ADM78921.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019737|gb|ADM78922.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019739|gb|ADM78923.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019741|gb|ADM78924.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019743|gb|ADM78925.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019745|gb|ADM78926.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019747|gb|ADM78927.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019749|gb|ADM78928.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019751|gb|ADM78929.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019753|gb|ADM78930.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019755|gb|ADM78931.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019757|gb|ADM78932.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019759|gb|ADM78933.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019761|gb|ADM78934.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019763|gb|ADM78935.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019765|gb|ADM78936.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019767|gb|ADM78937.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019769|gb|ADM78938.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019771|gb|ADM78939.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019773|gb|ADM78940.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019775|gb|ADM78941.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019777|gb|ADM78942.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019779|gb|ADM78943.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019781|gb|ADM78944.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019783|gb|ADM78945.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019785|gb|ADM78946.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019787|gb|ADM78947.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019789|gb|ADM78948.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019791|gb|ADM78949.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019793|gb|ADM78950.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019795|gb|ADM78951.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019797|gb|ADM78952.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019799|gb|ADM78953.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019801|gb|ADM78954.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019803|gb|ADM78955.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019805|gb|ADM78956.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019807|gb|ADM78957.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019809|gb|ADM78958.1| cryptochrome 1-like protein [Picea sitchensis]
gi|306019811|gb|ADM78959.1| cryptochrome 1-like protein [Picea sitchensis]
Length = 193
Score = 305 bits (782), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 141/193 (73%), Positives = 171/193 (88%)
Query: 53 RWWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRD 112
RWWLK SL+HLDSSLR+LG L+TKRST+S+S++L+VV+ATGATQLF+NHLYDPLSLVRD
Sbjct: 1 RWWLKQSLAHLDSSLRNLGARLITKRSTNSISAILQVVQATGATQLFYNHLYDPLSLVRD 60
Query: 113 HRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPP 172
H+ K+ L+++GI VRSFN+DLLYEPW+VND +G F+TF +W KCL+MP+DP APLLPP
Sbjct: 61 HKLKQDLSSRGILVRSFNSDLLYEPWEVNDEEGHAFSTFQDYWNKCLNMPYDPLAPLLPP 120
Query: 173 KRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNR 232
KRI +G++S CPSD L EDESEK SNALLARAWSPGWS+ADKALT FINGPL++Y+ NR
Sbjct: 121 KRIVAGEVSNCPSDDLNLEDESEKASNALLARAWSPGWSSADKALTAFINGPLLDYAINR 180
Query: 233 RKADSATTSFLSP 245
+KADSATTS LSP
Sbjct: 181 QKADSATTSLLSP 193
>gi|16125677|ref|NP_420241.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus CB15]
gi|221234432|ref|YP_002516868.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus NA1000]
gi|13422791|gb|AAK23409.1| deoxyribodipyrimidine photolyase - classI [Caulobacter crescentus
CB15]
gi|220963604|gb|ACL94960.1| deoxyribodipyrimidine photolyase [Caulobacter crescentus NA1000]
Length = 483
Score = 305 bits (782), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 190/479 (39%), Positives = 264/479 (55%), Gaps = 23/479 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
IVWFR+DLR+ DNPAL ++G VI ++I E G G S WWL SL L +S
Sbjct: 18 IVWFRKDLRIADNPALRHAAQSGRPVIPLYI-LDETPGIRPMGGASLWWLDKSLKSLAAS 76
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L +LGT LV ++ + L +++ +GA + +N LYD S RD K AL +G+
Sbjct: 77 LETLGTKLVLRKGV-AAEVLDQLIAQSGARSVVWNRLYDKPSTDRDAAIKAALRDRGVDC 135
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFD---PDAP--LLPPKRINSGDMS 181
+SFNA LL EPW V + QP+ F +W D AP L+ P R + + S
Sbjct: 136 QSFNAGLLNEPWTVKNGSDQPYKVFTPYWRAAREHLTDVAVTAAPGHLVAPARFPASE-S 194
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
+ + + KG + W+PG + A L F+ GP+ Y R TS
Sbjct: 195 LASWNLHPTKPDWSKGFDL-----WTPGEAGAHARLDAFLKGPIKGYGDQRDIPGVEATS 249
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSPHLHFGE+ R+V+ R S A++G+ E+ + FL IG RE++ + +N P
Sbjct: 250 KLSPHLHFGEIGPRQVWLATR----SAADQGDIPLAEA-DKFLSEIGWREFNHSILYNWP 304
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ F WV DEG +AW++G+TGYP+VDAGMRELW TG++H+R+R++V+SF
Sbjct: 305 HMPSANFKPEFDGFPWVKDEGALEAWKRGQTGYPIVDAGMRELWTTGFMHNRVRMIVASF 364
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
+K L + WR G +FWDTLLDADL ++ WQ+ +G+ D + RI NP +G KFDP
Sbjct: 365 LIKHLMIDWREGEAWFWDTLLDADLANNVGNWQWTAGSGADAAPYFRIFNPIAQGEKFDP 424
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
G+YVRRW+PEL + + IH PW P L A L Y PIV A+ R EA
Sbjct: 425 KGDYVRRWVPELRNVSDDVIHKPWTKPLH-LPAGAKRL---YSRPIVDHAMARARALEA 479
>gi|294055436|ref|YP_003549094.1| deoxyribodipyrimidine photo-lyase [Coraliomargarita akajimensis DSM
45221]
gi|293614769|gb|ADE54924.1| Deoxyribodipyrimidine photo-lyase [Coraliomargarita akajimensis DSM
45221]
Length = 476
Score = 305 bits (782), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 174/481 (36%), Positives = 269/481 (55%), Gaps = 29/481 (6%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
+IVWFR DLR DN ALAA + G A++ VFI EG + G S+WWL SL
Sbjct: 5 LAIVWFRNDLRFSDNAALAAAIAEGNAILPVFIRDQVSEGRWPMGAASKWWLHESLKRFA 64
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
S S G L+ R+ DS++ L + +GAT +++N Y+ +D + K L G+
Sbjct: 65 QSWNSCGGDLIF-RNGDSLAELRAIAAESGATSIYWNRRYEGHLREQDAQIKRELFEDGL 123
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFW----EKCLSMPFDPDAPLLP-----PKRI 175
V+S+N+ LL EP + + +G+P+ + ++ ++ ++ P PD + P+ +
Sbjct: 124 EVKSYNSSLLNEPHTIGNKEGRPYKVYTPYFKAVKDRPVARPVVPDLTAMAFPDELPQSL 183
Query: 176 NSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
+ PS+ + ES+ W P A + + F++ + Y +R +
Sbjct: 184 ALDALDLLPSNQWYRKFESK----------WEPSEEGAKQQVDEFLSLRVERYDTDRDRP 233
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
D TS LSP+LHFG++ R++ H + ++ ++ +FLK I RE++
Sbjct: 234 DLDGTSALSPYLHFGQIGPRQLVHELELRA--------DLEEQGPFIFLKEIYWREFAYN 285
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+ ++ P + E PL + F W + W++G+TGYP+VDAGMR+LW TGW+H+R+R
Sbjct: 286 VLYHFPRTAESPLQPQYESFPWEQNADLLSLWKRGKTGYPIVDAGMRQLWQTGWMHNRVR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++VSS VK L W+ G ++FWDTL+DADL S+ LGWQ+ G D + RI NP +
Sbjct: 346 MIVSSLLVKHLLQDWKEGARWFWDTLVDADLASNTLGWQWSGGCGADAAPYFRIFNPMIQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFDP YVRR++PEL+RLP ++IH PW AP+ VL AGIELG +YP+P+V +
Sbjct: 406 GKKFDPEALYVRRFVPELSRLPNKYIHEPWEAPDEVLAEAGIELGVDYPYPVVEHAVGRQ 465
Query: 476 R 476
R
Sbjct: 466 R 466
>gi|194365340|ref|YP_002027950.1| deoxyribodipyrimidine photo-lyase [Stenotrophomonas maltophilia
R551-3]
gi|194348144|gb|ACF51267.1| Deoxyribodipyrimidine photo-lyase [Stenotrophomonas maltophilia
R551-3]
Length = 471
Score = 305 bits (782), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 174/450 (38%), Positives = 258/450 (57%), Gaps = 23/450 (5%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
++VWFRRDLR++DNPAL A + AG V+ V+I AP EEG + PG S W SL+ LD
Sbjct: 3 VALVWFRRDLRLQDNPALQAALDAGHDVVPVYIHAPHEEGEWVPGAASDAWRHRSLAALD 62
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ LRS G+SLV RS DS+++L ++K TGA +F+N Y+P + RD K L QGI
Sbjct: 63 AYLRSRGSSLVL-RSGDSLATLQALIKQTGAEAVFWNRKYEPATQPRDATIKRTLREQGI 121
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
+S N LL+EPWD+ QGQP+ F +W LS P A PK + + +
Sbjct: 122 DAQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWRLP-ALQAAPKALTAHSV---- 176
Query: 185 SDTLVFEDESEKGS---NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
D+L E+ + + W PG + A +AL+ F +G L Y + R D TS
Sbjct: 177 -DSLGLEELRLAPTLDWDIGFWEHWQPGEAGALEALSVFEDGALRGYREQRDLPDRVGTS 235
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAG--DESVNLFLKSIGLREYSRYMSFN 299
+SPHLHFGE++ ++ H A EG ++ D ++ +L+ +G R+++ ++ +
Sbjct: 236 RMSPHLHFGEIAPWRIAH---------ALEGLRSAGTDADIDGYLRQLGWRDFAYHLLHH 286
Query: 300 HPYSHERPLLGHLKFFSWVV-DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
P + L F W W++G TG P+VDAG+RELW TG++H+R+R++V
Sbjct: 287 FPKTPTENLNPRFDRFPWATPSAAQLHDWQRGNTGVPIVDAGLRELWHTGYMHNRVRMIV 346
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+S+ K L+ W G ++FWDTL+DADL ++ +GWQ+++GT D + R+ NP + K
Sbjct: 347 ASYLCKHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEK 406
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAP 448
FDP Y+ RW+PELA LP + PW P
Sbjct: 407 FDPQARYISRWVPELAALPVKARFAPWQHP 436
>gi|225865104|ref|YP_002750482.1| deoxyribodipyrimidine photolyase family protein [Bacillus cereus
03BB102]
gi|225786063|gb|ACO26280.1| deoxyribodipyrimidine photo-lyase [Bacillus cereus 03BB102]
Length = 476
Score = 305 bits (781), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 161/479 (33%), Positives = 261/479 (54%), Gaps = 14/479 (2%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IV F++D R+ DNPAL ++G V+ V++ + + G S+WWL H++ + L
Sbjct: 6 IVIFQKDFRLYDNPALFEAAQSGEVVPVYV----HDETFSMGSASKWWLHHAIIDVQKQL 61
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+LG++L+ R ++ +L +++ T +++N YDP L + + K L +GI +
Sbjct: 62 EALGSTLII-RKGNTQEEILSLIEQLDITAVYWNICYDPDKLQSNQKMKIVLEGKGIVCK 120
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
FN+ LL EPW + + F F+ P P+ +RI G+ P+
Sbjct: 121 EFNSHLLLEPWIIKKKDNTEYKVFTPFYN-AFQKQVIPK-PISKVQRIKGGN--SLPASL 176
Query: 188 LVFEDESEKGS--NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
V E + + W P A K F + L Y + R + S L+P
Sbjct: 177 SVSELHLLPTIRWTSHIELIWEPTEEGAYKTCKKFFSSKLAFYCEGRDFPNENAHSMLAP 236
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
+L FG++SV+ ++H + K ++ VN F++ RE+S Y+ +++P++
Sbjct: 237 YLSFGQISVKWMYHYLINKS---TERQCSLFEKQVNSFIRQFIWREFSYYLLYHYPFTVY 293
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
+PL + F W ++ W++G TGYP +DAGMRELW TG++H+R R+ V+SF VK
Sbjct: 294 KPLNKSFEHFPWNKEDELLTVWQKGETGYPFIDAGMRELWQTGFMHNRARMAVASFLVKH 353
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
L +PW+ G K+F DTLL AD+ ++ +GWQ+++G+ D + RI NP +G KFD +GEY
Sbjct: 354 LLIPWQEGAKWFMDTLLAADIANNTMGWQWVAGSGADASPYFRIFNPITQGEKFDKDGEY 413
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
+R+W+PEL +P ++IH PW APE +LQ A I++G YP P+V AA+ R A M
Sbjct: 414 IRKWVPELRDMPNKYIHKPWEAPEHILQKANIQIGHTYPLPVVDHKAARERALCAYKSM 472
>gi|424668223|ref|ZP_18105248.1| hypothetical protein A1OC_01818 [Stenotrophomonas maltophilia
Ab55555]
gi|401068485|gb|EJP77009.1| hypothetical protein A1OC_01818 [Stenotrophomonas maltophilia
Ab55555]
Length = 471
Score = 305 bits (781), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 173/450 (38%), Positives = 259/450 (57%), Gaps = 23/450 (5%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
++VWFRRDLR++DNPAL A + AG V+ V+I AP EEG + PG S W SL+ LD
Sbjct: 3 VALVWFRRDLRLQDNPALQAALDAGHDVVPVYIHAPHEEGEWAPGAASDAWRHRSLAALD 62
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ LR+ G+SLV RS DS+ +L ++ TGA +++N Y+P + RD K L QGI
Sbjct: 63 ADLRTRGSSLVL-RSGDSLPALQLLIAQTGAEAVYWNRKYEPATQPRDATIKRMLREQGI 121
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
+S N LL+EPWD+ QGQP+ F +W LS P AP P+ ++
Sbjct: 122 DAQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWRLP-APQAVPEA-----LAPHA 175
Query: 185 SDTLVFEDESEKGS---NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
+D+L +D + + W PG + A +AL+ F +G L Y + R D TS
Sbjct: 176 ADSLALDDLELAPTLDWDTGFWEHWQPGEAGALEALSVFEDGALRGYREQRDLPDRVGTS 235
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAG--DESVNLFLKSIGLREYSRYMSFN 299
LSPHLHFGE++ ++ H A EG ++ D ++ +L+ +G R+++ ++ +
Sbjct: 236 RLSPHLHFGEIAPWRIAH---------ALEGLRSAGTDADIDGYLRQLGWRDFAYHLLHH 286
Query: 300 HPYSHERPLLGHLKFFSWVV-DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
P + L F W + AW++G TG P+VDAG+RELW TG++H+R+R++V
Sbjct: 287 FPKTPTDNLNPRFDRFPWATPSDAQLHAWQRGNTGVPIVDAGLRELWHTGYMHNRVRMIV 346
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+S+ K L+ W G ++FWDTL+DADL ++ +GWQ+++GT D + R+ NP + K
Sbjct: 347 ASYLCKHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEK 406
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAP 448
FDP Y+ RW+PELA LP + PW P
Sbjct: 407 FDPQARYISRWVPELAALPVKARFAPWQHP 436
>gi|424881257|ref|ZP_18304889.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392517620|gb|EIW42352.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 483
Score = 305 bits (781), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 180/473 (38%), Positives = 255/473 (53%), Gaps = 15/473 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I+WFR+DLR++DN AL A R+G +I ++I PE G G WWL HSL LD S
Sbjct: 10 ILWFRKDLRLDDNRALDAAHRSGRPIIPLYISEPEASGTGPLGAAQAWWLHHSLEALDRS 69
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
LR LV S +++ L ++ +GA +F+N YDP + D K L Q I
Sbjct: 70 LRERQARLVLA-SGEALEVLCTFIRESGAEAVFWNRRYDPSGISIDAHIKHELEKQAIEA 128
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
RSF LL+EP + G P+ + FW + L +P+ PL P ++ S+ P
Sbjct: 129 RSFGGQLLHEPSRLMTGNGTPYRVYTPFW-RALEGGGEPEQPLEAPAKLRIA--SQLPKS 185
Query: 187 TLV--FEDESEKGSNAL-LARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
+ ++ K A+ W+PG A + L FI L Y +NR TS L
Sbjct: 186 EALESWKLLPTKPDWAVHFTDLWTPGEDGAHEKLRAFIEDALDGYKENRDYPARPATSLL 245
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SPHL FGE+S +++ R + V F K I RE+S ++ F+ P
Sbjct: 246 SPHLAFGEISPARIWDATR-------GLSKRVAAADVVHFRKEIAWREFSYHLLFHFPRL 298
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
F W D+ FK W +G TGYP+VDAGMR+LW GW+H+R+R++V+SF +
Sbjct: 299 ASNNWNDRFDGFEWRNDDDDFKVWCRGMTGYPIVDAGMRQLWRHGWMHNRVRMIVASFLI 358
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WR G +F DTL+DAD ++A WQ+++G+ D F RI NP +G KFDP+G
Sbjct: 359 KDLMIDWRRGEAWFRDTLVDADTANNAASWQWVAGSGADASPFFRIFNPVLQGEKFDPDG 418
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
+YVR ++PEL L ++IH P+ AP+S+L AGI LG YP PIV +A+ R
Sbjct: 419 DYVRTYVPELRELGVKYIHRPFEAPKSMLDEAGITLGQTYPKPIVDHASARNR 471
>gi|424910085|ref|ZP_18333462.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392846116|gb|EJA98638.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
viciae USDA 2370]
Length = 479
Score = 305 bits (781), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 186/472 (39%), Positives = 262/472 (55%), Gaps = 16/472 (3%)
Query: 8 IVWFRRDLRVEDNPAL-AAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
IVWFR+DLR+ DN AL AA G VI V+I E+ GR +WWL HSL+ L ++
Sbjct: 9 IVWFRKDLRLSDNLALLAAADHKGPVIPVYI---REKCCGALGRAQKWWLHHSLTALHAA 65
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L+ G+ LV S D+ L ++ TGA +F+N YDP + D K AL +G+ V
Sbjct: 66 LKKTGSRLVLA-SGDAEEVLRRLIAETGADTVFWNRRYDPEGISTDKTLKRALRDKGLTV 124
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
RSF+ LL+EP + G P+ + FW + L +P AP P R+N+ + S+
Sbjct: 125 RSFSGHLLHEPSKLQTKSGGPYRVYTPFW-RALEGGEEPHAPADAPDRLNA-PRNWPRSE 182
Query: 187 TLVFEDESEKGSNAL--LARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
TL K + + W+PG A + L+ FI+G L Y + R TS LS
Sbjct: 183 TLDEWQLLPKRPDWAREFSDIWTPGEDGAREKLSDFIDGALKGYEEGRDLPAKDATSRLS 242
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
PHL GE+S V+H + ++ F K I RE+ ++ F+ P
Sbjct: 243 PHLALGEISPATVWHATK-------GLSRHIASNDISRFRKEIVWREFCYHLLFHFPELD 295
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
E+ F+W D+ F AW +G TGYP+VDAGMR+LW G +H+R+R++V+SF +K
Sbjct: 296 EKNWNDSFDAFNWRDDDKSFTAWTRGMTGYPIVDAGMRQLWRHGTMHNRVRMIVASFLIK 355
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L + WR G K+F DTL+DAD S+A WQ+++G+ D F RI NP + KFD +G+
Sbjct: 356 HLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPILQNEKFDGDGD 415
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
YVRR++PELARL ++IH P+ AP+ VL AGI LG YP PIV A+ R
Sbjct: 416 YVRRFVPELARLERKYIHKPFEAPKEVLTKAGITLGETYPNPIVDHGRARER 467
>gi|302383034|ref|YP_003818857.1| deoxyribodipyrimidine photo-lyase [Brevundimonas subvibrioides ATCC
15264]
gi|302193662|gb|ADL01234.1| Deoxyribodipyrimidine photo-lyase [Brevundimonas subvibrioides ATCC
15264]
Length = 490
Score = 305 bits (781), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 180/469 (38%), Positives = 249/469 (53%), Gaps = 15/469 (3%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYY--PGRVSRWWLKHS 59
G I+WFRRDLR+ DNPAL G V+ V+I +EG G S WWL S
Sbjct: 8 GPAPVILWFRRDLRLADNPALNKAHATGRPVVPVYI---HDEGTAVRPAGAASLWWLDKS 64
Query: 60 LSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
L L SL G +L+ +R DS + L ++ TGA +F N L++P + RD L
Sbjct: 65 LRALAGSLAERGATLILRRG-DSETELRRLIDQTGADTVFLNRLFEPEAWTRDADIAHGL 123
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGD 179
G+ R N LL P + + G P+ F F K L +P A P+++ G
Sbjct: 124 KTDGVECRGSNGSLLALPGSLLNGSGGPYKVFTPF-MKALRAQAEPPAHTTGPRQL--GA 180
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
SD L + W+PG A AL F++G L +YS R +
Sbjct: 181 APGLESDDLDAWGLHPTRPDWSKGFDWTPGEDGATAALHRFVSGGLADYSNGRDRPAEPA 240
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSPHLHFGE+S + + R A +G K + F+ + R++S ++ +
Sbjct: 241 TSRLSPHLHFGEISPWRAWIAARD-----AADGGKVTSGEADKFIAELIWRDFSAHLLHH 295
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P ++ W DE F AW +G TGYP+VDAGMRELWATG +H+R+R++V+
Sbjct: 296 FPTLPDKAFRPEYDAMPWRDDEPGFLAWTRGMTGYPIVDAGMRELWATGVMHNRVRMIVA 355
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF +K L + WR G +FWDTL+DADL S++ WQ+++G+ D + RI NP +G KF
Sbjct: 356 SFLIKDLLIDWRRGEAWFWDTLVDADLASNSQNWQWVAGSGADASPYFRIFNPVTQGQKF 415
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
D YV+RW+PELA +P WIH PWNAP +L+ GI LG+ YP PIV
Sbjct: 416 DAEARYVKRWIPELAPVPARWIHAPWNAPPEILRDCGIRLGTTYPRPIV 464
>gi|304321394|ref|YP_003855037.1| blue light photoreceptor cryptochrome [Parvularcula bermudensis
HTCC2503]
gi|303300296|gb|ADM09895.1| blue light photoreceptor cryptochrome [Parvularcula bermudensis
HTCC2503]
Length = 478
Score = 305 bits (781), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 177/466 (37%), Positives = 249/466 (53%), Gaps = 15/466 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I+W R DLR +DNPA+ +GA V+ +++ G + G RWWL HSL
Sbjct: 6 ILWLREDLRFDDNPAMREAAASGAPVLCLYVLDDATAGDFAMGAAQRWWLHHSLCAFKED 65
Query: 67 LRSLGTSLVTKRS--TDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
L + G +L+ +R T+ V +L + +KA+ +F+N Y D K AL GI
Sbjct: 66 LETRGGALILRRGKETEIVPALAKEIKAS---HVFWNRRYMKWQTDPDTEIKSALQDMGI 122
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
S N LLYEPW++ G P+ + +W K L P A L ++N+ S
Sbjct: 123 KGISCNGRLLYEPWEIETKSGDPYKVYTPYW-KSLQQKEGPRAALPRTDKLNAPP-SLPS 180
Query: 185 SDTLVFEDESEKGSNAL--LARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+D L + + N W+PG A L +++ Y R + D TS
Sbjct: 181 TDRLDDWNLLPRSPNWAEGFEPVWTPGEKGARARLRAWLDTDAASYDDCRNRPDQDRTSR 240
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHLHFGE+S ++H VS A E + FL I RE+S + + HP
Sbjct: 241 LSPHLHFGEISPVVLWH-----SVSDAMEAGDIPKDQGTSFLSEIAWREFSYQLLYYHPT 295
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
++PL+ F W D+ AW++GRTGYP+VDAGMR+LW GW+H+R+R++V SF
Sbjct: 296 MRDQPLMEKFTDFEWDTDKKALNAWQRGRTGYPIVDAGMRQLWTEGWMHNRVRMIVGSFL 355
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L L WR GM++FWD L+DAD ++ WQ+I+G D F RI NP + KFDP+
Sbjct: 356 VKDLLLDWRDGMRWFWDCLVDADPANNTASWQWIAGCGADAAPFFRIFNPTTQSEKFDPD 415
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
G Y+RR++PEL LPT +IH P A ++L+ AGI LG YP PIV
Sbjct: 416 GAYIRRYVPELRDLPTRFIHEPRKASTAILKDAGIVLGETYPDPIV 461
>gi|424914362|ref|ZP_18337726.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392850538|gb|EJB03059.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 507
Score = 305 bits (781), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 184/480 (38%), Positives = 258/480 (53%), Gaps = 20/480 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I+WFRRDLR++DN AL A +G +I ++I P G G WWL HSL LD S
Sbjct: 34 ILWFRRDLRLDDNQALNAAHLSGRPIIPLYINEPAAAGTGPLGAAQAWWLHHSLEALDRS 93
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L LV S D++ L V+K +GA +F+N YDP + D K+ L Q I
Sbjct: 94 LHERQGGLVLA-SGDALEVLRAVIKKSGAEAVFWNRRYDPSGISVDTHIKQELEKQAIEA 152
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
RSF LL+EP + G P+ + FW + L + + PL P ++ R S+
Sbjct: 153 RSFGGQLLHEPSRLMTGSGTPYRVYTPFW-RALEGAGEAEPPLEAPAKLRLA-AQRPASE 210
Query: 187 TL----VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
TL + + + + W+PG A + L+ F+ L Y +NR TS
Sbjct: 211 TLKSWKLLPTKPDWAKD--FTDLWTPGEQGARERLSAFVEDELKGYKENRDYPAKPATSM 268
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHL GE+S +++ R N+ + F K I RE+S ++ F+ P
Sbjct: 269 LSPHLALGEISPARIWDATR-------GLSNRVPAADIVHFRKEIAWREFSYHLLFHFPR 321
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
F W D+G F+AWR+G TGYP+VDAGMR+LW GW+H+R+R++V+SF
Sbjct: 322 LASENWNDRFDGFKWRNDDGDFEAWRRGMTGYPIVDAGMRQLWRHGWMHNRVRMIVASFL 381
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
+K L + WR G +F DTL+DAD ++A WQ+++G+ D F RI NP +G FDP+
Sbjct: 382 IKDLMIDWRDGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPMLQGETFDPD 441
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
G+YVR +PEL RL ++IH P+ AP+S L AGI LG YP PIV D A R D AL+
Sbjct: 442 GDYVRAHVPELQRLGAKYIHRPFEAPKSALDEAGIILGQTYPKPIV--DHASAR-DRALA 498
>gi|192291959|ref|YP_001992564.1| deoxyribodipyrimidine photo-lyase [Rhodopseudomonas palustris
TIE-1]
gi|192285708|gb|ACF02089.1| Deoxyribodipyrimidine photo-lyase [Rhodopseudomonas palustris
TIE-1]
Length = 483
Score = 305 bits (780), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 187/484 (38%), Positives = 260/484 (53%), Gaps = 15/484 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
IVWFR DLR+ D+PAL A ++GA V+ V++ + G RWWL SL L+S
Sbjct: 11 IVWFRDDLRLADHPALHAAAQSGAPVLCVYVLDEVSDDVRALGGAVRWWLAQSLRALESD 70
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
LR+LG +L+ +R + + L E+ + A + +N + +ALT GIA
Sbjct: 71 LRALGGALILRRGP-AAAVLAELAQQHDAAAVHWNEIEIAAHRAVADALADALTVAGIAY 129
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
D L EP + G+ F FW + LS+ DP PL P + PSD
Sbjct: 130 HRHRGDTLVEPSAIRSKDGRGMRVFTPFWRRVLSL-GDPPQPLPRPTTLRPAPAP--PSD 186
Query: 187 TL---VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
L E + + L + W+PG + A L+ F+ G L Y+ R D TS L
Sbjct: 187 QLGDWQLEPTAPDWAGGL-RQTWTPGEAAAQARLSDFLAG-LPGYADGRDYPDRHITSGL 244
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SPHL FGE+S R+V++ R A A ++ FL +G RE+ R++ F+HP
Sbjct: 245 SPHLRFGEISPRQVWYAARF-----AAAERPAIAPDIDKFLSELGWREFCRHLLFDHPDL 299
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
R L F W D+ AW++GRTGYP+VDAGMRELW +G +H+R+R+VV SF V
Sbjct: 300 ATRNLQPAFDAFPWQSDDAVLTAWQRGRTGYPIVDAGMRELWHSGVMHNRVRMVVGSFLV 359
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WR G ++FWDTL+DAD S+ WQ+++G D + R+ NP + KFD G
Sbjct: 360 KHLLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRVFNPVLQSEKFDAGG 419
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSE 483
Y++RW+PELA LP + IH PW A L AAGIELG NYP PIV + R A +E
Sbjct: 420 AYIQRWVPELAGLPNDLIHQPWTATPLELAAAGIELGGNYPGPIVDHKTGRQRALSAYAE 479
Query: 484 MWQQ 487
+ Q+
Sbjct: 480 LRQR 483
>gi|299135199|ref|ZP_07028390.1| DNA photolyase FAD-binding [Afipia sp. 1NLS2]
gi|298590176|gb|EFI50380.1| DNA photolyase FAD-binding [Afipia sp. 1NLS2]
Length = 485
Score = 305 bits (780), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 182/477 (38%), Positives = 258/477 (54%), Gaps = 12/477 (2%)
Query: 5 GCSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYP---GRVSRWWLKHSL 60
+IVWFR DLR+ D+ AL A AGA +I +++ E G + P G ++WWL +SL
Sbjct: 6 ATAIVWFRDDLRLSDHAALIAARDAGATLICLYVLDDTETGKHGPRSLGAAAQWWLANSL 65
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
LD+ L+ LG LV +R D+ L ++ + A +F+ R EAL
Sbjct: 66 RALDTDLKKLGQHLVLRRG-DAHEVLPKLAREANAKAVFWIDSEVSAEAARARDVAEALK 124
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
G+ V +DLL P + + +G F FW++ + +P PL +++ +
Sbjct: 125 EIGVEVHVSASDLLASPQSIRNKEGHGLRVFTPFWKRVRAQG-EPPRPLAAVRKLPPPVV 183
Query: 181 SRCPSDTLVFEDESEKGSNALLAR-AWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
S + ++ E + A R W+PG + A + L F++G + Y++ R
Sbjct: 184 SLKSENLEDWQLEPTRPDWAGGFRETWTPGEAGAHRRLHDFLDGAIKGYAEGRDFPGKDH 243
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
S LSPHL FGE+S R+VFH R A E + A + FL +G RE+ R++ F+
Sbjct: 244 ASHLSPHLRFGEISPRQVFHAARF-----AAERHPALSRDIEKFLSELGWREFCRHLLFD 298
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
HP H L F W D +AW+QGRTGYP+VDAGMRELW TG + +RIR+V +
Sbjct: 299 HPDLHRHNLQSSFDDFPWRRDAKALRAWQQGRTGYPIVDAGMRELWHTGAMQNRIRMVTA 358
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L L WR G ++FWDTL+DAD S+ WQ+++G D + RI NP +G KF
Sbjct: 359 SFLVKHLLLDWRDGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRIFNPILQGEKF 418
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
DP+G YV RW+PEL++LP IH PW A L AAG+ LG YP PIV A+ R
Sbjct: 419 DPDGAYVARWVPELSKLPPALIHKPWEATPMELAAAGVTLGKTYPEPIVDHKDARER 475
>gi|338974956|ref|ZP_08630311.1| deoxyribodipyrimidine photolyase [Bradyrhizobiaceae bacterium
SG-6C]
gi|338231555|gb|EGP06690.1| deoxyribodipyrimidine photolyase [Bradyrhizobiaceae bacterium
SG-6C]
Length = 488
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 183/471 (38%), Positives = 257/471 (54%), Gaps = 21/471 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYP------GRVSRWWLKHSLS 61
IVWFR DLR+ D+PAL A A + + E+ P G SRWWL SL
Sbjct: 10 IVWFRDDLRLSDHPALHAAAETDAPLVLLYVLDEQSTSLRPPRGRPLGGASRWWLAQSLR 69
Query: 62 HLDSSLRSLGTSLVTKRSTDS--VSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
L +SL + G +LV ++ + +S L + ++A + + + ++ RD AL
Sbjct: 70 SLQASLAARGQTLVLRKGAAARVISDLAQDIEA-ASVHWIESDVPSQSAMERD--VTVAL 126
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGD 179
G+ R F DLL +P + + +G+ F FW++ LS+ DP PL PK++ G
Sbjct: 127 KEIGVQARGFRGDLLVKPASLRNKEGRGLRVFTPFWKRILSL-GDPPQPLPAPKKLKPGP 185
Query: 180 MSRCPSDTLVFEDESEKGSN--ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
SD L + K + L W+PG S A L F+ + Y+ R + D
Sbjct: 186 A--VASDDLASWNLEPKHPDWAGGLRDTWTPGESAAQTRLHDFLETGIKGYATLRDRPDR 243
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
TS LSPHL FGE+S R+V+H ++A A V FL +G RE+SR++
Sbjct: 244 DGTSRLSPHLRFGEISPRQVWH-----AANFAAAQKPAIASDVGKFLSELGWREFSRHLL 298
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
F+ P E+ L F W D +AW++GRTGYP+VDAGMRELW TG +H+R+R+V
Sbjct: 299 FDLPDLAEKNLQSSFDAFPWRRDAKALRAWQRGRTGYPIVDAGMRELWHTGVMHNRVRMV 358
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V+SF VK L + WR G K+FWDTL+DAD S+ WQ+++G+ D + R+ NP +G
Sbjct: 359 VASFLVKHLLIDWRHGEKWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPVLQGE 418
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
KFDP+G YV RW+PELARL + IH PW A L AAG+ LG YP P+V
Sbjct: 419 KFDPDGAYVSRWVPELARLSAKLIHQPWEATPMELAAAGVTLGKTYPEPMV 469
>gi|254522734|ref|ZP_05134789.1| deoxyribodipyrimidine photolyase [Stenotrophomonas sp. SKA14]
gi|219720325|gb|EED38850.1| deoxyribodipyrimidine photolyase [Stenotrophomonas sp. SKA14]
Length = 476
Score = 303 bits (777), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 170/448 (37%), Positives = 253/448 (56%), Gaps = 17/448 (3%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
++VWFRRDLR++DNPAL A + AG V+ V+I AP EEG + PG S W SL+ LD
Sbjct: 8 VALVWFRRDLRLQDNPALQAALEAGHEVVPVYIHAPHEEGEWVPGAASDAWRHRSLAALD 67
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ LRS G+SLV R DS+++L +V+ GA +++N Y+P + RD K L GI
Sbjct: 68 ADLRSRGSSLVL-RHGDSLATLQALVEQIGAEAVYWNRKYEPATQPRDAEIKRTLREHGI 126
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
+S N LL+EPWD+ QGQP+ F +W LS P A PK + +
Sbjct: 127 DAQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWCLP-ALTAAPKALTAHKADGLA 185
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
D L + S + W PG + A +AL+ F +G L Y + R D TS +S
Sbjct: 186 LDELRLAPTLDWDSG--FWQHWRPGEAGALEALSVFEDGALRGYREQRDLPDRVGTSRMS 243
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAG--DESVNLFLKSIGLREYSRYMSFNHPY 302
PHLHFGE++ ++ H A EG ++ D ++ +L+ +G R+++ ++ + P
Sbjct: 244 PHLHFGEIAPWRIAH---------ALEGLRSAGTDADIDGYLRQLGWRDFAYHLLHHFPK 294
Query: 303 SHERPLLGHLKFFSWVVDE-GYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ L F W W++G TG P+VDAG+RELW TG++H+R+R++V+S+
Sbjct: 295 TPTDNLNPRFDRFPWATPSVAQLHDWQRGNTGVPIVDAGLRELWHTGYMHNRVRMIVASY 354
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L+ W G ++FWDTL+DADL ++ +GWQ+++GT D + R+ NP + KFDP
Sbjct: 355 LCKHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 414
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPE 449
Y+ RW+PELA LP + PW P+
Sbjct: 415 QARYISRWVPELAALPVKARFAPWQHPQ 442
>gi|344207024|ref|YP_004792165.1| FAD-binding DNA photolyase [Stenotrophomonas maltophilia JV3]
gi|343778386|gb|AEM50939.1| FAD-binding DNA photolyase [Stenotrophomonas maltophilia JV3]
Length = 471
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 176/457 (38%), Positives = 259/457 (56%), Gaps = 37/457 (8%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
++VWFRRDLR++DNPAL A + AG V+ V+I AP EEG + PG S W SL LD
Sbjct: 3 VALVWFRRDLRLQDNPALQAALDAGHDVVPVYIHAPHEEGEWVPGAASDAWRHRSLGALD 62
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ LR+ G+SLV RS DS+S L +++ TGA +++N Y+P + RD K L QGI
Sbjct: 63 ADLRARGSSLVL-RSGDSLSILQLLIEQTGAEAVYWNRKYEPATQPRDATIKRTLREQGI 121
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS---MPFDPDAP-LLPPKRINS--- 177
+S N LL+EPWD+ QGQP+ F +W LS +P AP L P ++S
Sbjct: 122 DAQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWRLPALQAAPQALTPHTVDSLAL 181
Query: 178 GDMSRCPS---DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRK 234
D+ P+ D +E W PG + A +AL+ F +G L Y + R
Sbjct: 182 DDLQLAPTLDWDIGFWEH-------------WQPGEAGALEALSVFEDGALRGYREQRDL 228
Query: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAG--DESVNLFLKSIGLREY 292
D TS LSPHLHFGE++ ++ H A EG ++ D ++ +L+ +G R++
Sbjct: 229 PDRVGTSRLSPHLHFGEIAPWRIAH---------ALEGLRSAGTDADIDGYLRQLGWRDF 279
Query: 293 SRYMSFNHPYSHERPLLGHLKFFSWVV-DEGYFKAWRQGRTGYPLVDAGMRELWATGWLH 351
+ ++ + P + L F W + W++G TG P+VDAG+RELW TG++H
Sbjct: 280 AYHLLHHFPKTPTDNLNPRFDRFPWATPSDAQLHDWQRGNTGVPIVDAGLRELWHTGYMH 339
Query: 352 DRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDN 411
+R+R++V+S+ K L+ W G ++FWDTL+DADL ++ +GWQ+++GT D + R+ N
Sbjct: 340 NRVRMIVASYLCKHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFN 399
Query: 412 PQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAP 448
P + KFDP Y+ RW+PELA LP + PW P
Sbjct: 400 PVTQAEKFDPQARYISRWVPELAALPVKARFAPWQHP 436
>gi|295689308|ref|YP_003593001.1| deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756]
gi|295431211|gb|ADG10383.1| Deoxyribodipyrimidine photo-lyase [Caulobacter segnis ATCC 21756]
Length = 481
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 180/473 (38%), Positives = 247/473 (52%), Gaps = 15/473 (3%)
Query: 5 GCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
G IVWFR+DLR+ DNPAL +G + E G G S WWL SL L
Sbjct: 13 GAVIVWFRKDLRIADNPALRHAADSGRPVVCLYILDETPGVRPMGAASLWWLDKSLKSLA 72
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
L LG LV ++ + L ++ TGAT + +N LYD S+ RD K L G+
Sbjct: 73 QELEKLGNRLVLRKGV-AADVLDALIAETGATGVVWNRLYDKASVDRDATIKARLKEAGV 131
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLP-PKRINSGDMSRC 183
+SFNA LL EPW V + GQP+ F +W + D D + P PK + D +
Sbjct: 132 DCQSFNAGLLNEPWTVQNGSGQPYKVFTPYW-RAARQHLD-DVTVEPAPKVLRCLDKAVR 189
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
++ + + W+PG + A L F++GP+ Y + R + TS L
Sbjct: 190 SEPLAAWDLHPTRPDWSKGFDLWTPGEAGARARLDAFLSGPITGYGEKRDIPSAPATSRL 249
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SPHLHFGE+ R+V+ R A E + FL +G RE++ + F+ P
Sbjct: 250 SPHLHFGEIGPRQVWLAARN-----AAEAGDIPTAEADKFLSELGWREFNHSILFHWPQL 304
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
R F W D F+AW +G TGYP+VDAGMRELW TG++H+R+R++V+SF +
Sbjct: 305 PARNFKPEFDGFPWAKDHAAFEAWTRGETGYPIVDAGMRELWTTGFMHNRVRMIVASFLI 364
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WR G +FWDTL+DADL ++ WQ+ +G+ D + RI NP +G KFDP G
Sbjct: 365 KHLMIDWREGEAWFWDTLVDADLANNVGNWQWTAGSGADAAPYFRIFNPISQGEKFDPRG 424
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
+YVRRW+PEL +P + IH PW P + AA Y PIV D AK R
Sbjct: 425 DYVRRWVPELKTVPDDVIHKPWERPLHLSPAA----RRIYAKPIV--DHAKAR 471
>gi|414162215|ref|ZP_11418462.1| hypothetical protein HMPREF9697_00363 [Afipia felis ATCC 53690]
gi|410879995|gb|EKS27835.1| hypothetical protein HMPREF9697_00363 [Afipia felis ATCC 53690]
Length = 485
Score = 303 bits (776), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 186/475 (39%), Positives = 253/475 (53%), Gaps = 14/475 (2%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGP---YYPGRVSRWWLKHSLSHL 63
IVWFR +LR+ D+PAL A AGA ++ ++I G G ++WWL SL L
Sbjct: 9 IVWFRDNLRLSDHPALVAAREAGAALVCLYILDDTHTGKGGNRSLGAATQWWLASSLRAL 68
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
D+ L+ G LV ++ D+ + L + K TGA +F+ P R EAL G
Sbjct: 69 DTDLKKRGQHLVLRKG-DARAILPRLAKDTGALAVFWIDSEIPAEAARAQDTAEALHEIG 127
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
+ +DLL P + + +G F FW++ S DP PL P R ++
Sbjct: 128 VETHISPSDLLASPPSIRNKEGNGLRVFTPFWKRVRSQ-GDPPRPL-PAVRKLPPPVASV 185
Query: 184 PSDTLV--FEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
S+ L + + L W+PG S A + L F++ + Y+ R S
Sbjct: 186 KSENLKDWKLEPTHPDWAGGLRETWTPGESGAHRRLNDFLDEAIKGYAIGRDFPGRDHAS 245
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSPHL FGE+S R+VFH R A E + A V FL +G RE+ R++ F+HP
Sbjct: 246 HLSPHLRFGEISPRQVFHAARF-----AAEQHPALSRDVEKFLSELGWREFCRHLLFDHP 300
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
H R L F W D +AW+QGRTGYP+VDAGMRELW TG + +R+R+V +SF
Sbjct: 301 DLHRRNLQSSFDDFPWRRDAKALRAWQQGRTGYPIVDAGMRELWHTGTMQNRVRMVTASF 360
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L L WR G +FWDTL+DAD S+ WQ+++G D + RI NP +G KFDP
Sbjct: 361 LVKHLLLDWREGEAWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRIFNPILQGEKFDP 420
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
+G YV +W+PELA+LP IH PW+A L AAG+ LG YP PIV AA+ R
Sbjct: 421 DGAYVAKWVPELAKLPPALIHKPWDATPLELAAAGVTLGKTYPEPIVDHKAARER 475
>gi|189346874|ref|YP_001943403.1| deoxyribodipyrimidine photo-lyase [Chlorobium limicola DSM 245]
gi|189341021|gb|ACD90424.1| Deoxyribodipyrimidine photo-lyase [Chlorobium limicola DSM 245]
Length = 473
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 185/488 (37%), Positives = 260/488 (53%), Gaps = 38/488 (7%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+I WFR+DLR+EDNP+L G+V+ V+I G + G +RWWL HSL L+ S
Sbjct: 6 TIHWFRQDLRLEDNPSLYYAALKGSVLPVYILDDRNAGDFRMGGANRWWLHHSLESLNRS 65
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L+ T L+ D + L + +TGAT++++N Y+P + RD R K L QGI
Sbjct: 66 LQGRLTLLMG----DPLEILPALAASTGATKVYWNRCYEPWRISRDTRLKHKLREQGITA 121
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEK-CLSMPFDPDAPLLPPKRINSGDMSRCPS 185
S+N +L+EPW+V+ + G P+ F F+ K CLS P PL P +++ CPS
Sbjct: 122 ESYNGSMLWEPWEVHKSDGTPYKVFTPFYRKGCLSAA-SPRMPLPLPVKLD------CPS 174
Query: 186 DTLVFEDESEKGSNALLARA---------WSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
E+ + LL R W+ G + A + L F+ L Y + R
Sbjct: 175 PP---EESLPLEALGLLPRIRWDRQLEPHWTIGENGALERLAIFLKHGLPGYREGRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNL--FLKSIGLREYSR 294
S LSP LHFGE+S + +H G A ++L F + RE+S
Sbjct: 232 RPNVSRLSPSLHFGEISPNQAWH------------GAIAAGSGIDLDHFQSELAWREFSY 279
Query: 295 YMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
+ +++P E+ L F W + W+QG TGYP+VDAGMRELW TG++H+RI
Sbjct: 280 SLLYHNPGLPEKNLQKSFDRFPWEENPAALMRWQQGLTGYPIVDAGMRELWQTGYMHNRI 339
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R+V SF VK L L W G +F D L DADL ++ WQ+I+G D + RI NP
Sbjct: 340 RMVAGSFLVKNLLLHWHEGESWFRDCLADADLAINSASWQWIAGCGADAAPYFRIFNPVT 399
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
+G KFD +G Y RR+LPELARLP ++ PW AP SVL AGI G YP PIV + +++
Sbjct: 400 QGQKFDADGSYTRRYLPELARLPDRYLFSPWEAPVSVLADAGIATGKTYPEPIVDLKSSR 459
Query: 475 CRLDEALS 482
+ EA +
Sbjct: 460 RQALEAYA 467
>gi|86749484|ref|YP_485980.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris HaA2]
gi|86572512|gb|ABD07069.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas
palustris HaA2]
Length = 487
Score = 303 bits (775), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 182/488 (37%), Positives = 265/488 (54%), Gaps = 20/488 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYP-------GRVSRWWLKHSL 60
IVWFR DLR+ D+PAL A +G+ + + I+ +E+ P G +RWWL SL
Sbjct: 10 IVWFRDDLRLSDHPALHAAAASGSPL-ICIYVHDEQSPQLRPPQARPIGGAARWWLAQSL 68
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHL-YDPLSLVRDHRAKEAL 119
L + L G L+ +R + + + E+ + A + +N + P + D A E L
Sbjct: 69 RALAAELEQRGARLILRRGP-AAAIVGELARQVDAAAVHWNEIEIAPHRAIADDLA-ETL 126
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSG- 178
+ GI DLL P ++ G+ F FW + L + DP PL P + +G
Sbjct: 127 SMSGIDHHRHPGDLLVAPSEIRTKDGRGLRVFTPFWRRVLGL-GDPPKPLPAPAMLRAGP 185
Query: 179 DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
D++ T E + + L A +W+PG A LT F++ L Y+ +R + D
Sbjct: 186 DIASDDPATWQLEPTAPDWAGGLRA-SWTPGERAAHDLLTAFLDR-LPGYAADRDRPDRD 243
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LSPHL FGE+S R++++ R A ++ FL +G RE+ R++
Sbjct: 244 ATSLLSPHLRFGEISPRQLWYAARFAAAK-----RPAIAADIDKFLSELGWREFCRHLLH 298
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
+HP ER L F W D+ AW++GRTGYP+VDAGMR+LW TG +H+RIR+VV
Sbjct: 299 DHPDLAERNLQSAFDAFPWTRDDAALAAWQRGRTGYPIVDAGMRQLWHTGVMHNRIRMVV 358
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L + WR G ++FWDTL+DAD S+ WQ+++G+ D + R+ NP +G K
Sbjct: 359 ASFLVKHLLIDWRLGEEWFWDTLVDADPGSNPGNWQWVAGSGADAAPYFRVFNPILQGEK 418
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FDP G+YVRRW+PE+A LP ++IH PW A AAG+ LG NYP PIV + R
Sbjct: 419 FDPAGDYVRRWVPEIAALPNKFIHQPWTATLLERAAAGVALGGNYPAPIVDHKVGRARAL 478
Query: 479 EALSEMWQ 486
A +E+ Q
Sbjct: 479 AAYAELRQ 486
>gi|160335014|gb|ABX24915.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335192|gb|ABX25004.1| cryptochrome 1 [Capsella bursa-pastoris]
Length = 161
Score = 303 bits (775), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 151/161 (93%), Positives = 156/161 (96%)
Query: 268 WANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAW 327
WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHERPLLGHLKFF W VDE YFKAW
Sbjct: 1 WANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAW 60
Query: 328 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 387
RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE
Sbjct: 61 RQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLE 120
Query: 388 SDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRR 428
SDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVRR
Sbjct: 121 SDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRR 161
>gi|163759469|ref|ZP_02166554.1| DNA photolyase [Hoeflea phototrophica DFL-43]
gi|162283066|gb|EDQ33352.1| DNA photolyase [Hoeflea phototrophica DFL-43]
Length = 484
Score = 302 bits (774), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 175/473 (36%), Positives = 250/473 (52%), Gaps = 15/473 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IVWFR DLRV DN AL A V+ V+I P G +WWL HSL+ L
Sbjct: 12 AIVWFRNDLRVNDNAALLAASSHKQVVPVYILEPAANTRAI-GGARKWWLHHSLAKLGEK 70
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L LG L+ R D + +V+ T A +++N YDP L D K+AL AQ I V
Sbjct: 71 LADLGAPLMLMRG-DPALLIAGLVEKTDAAAVYWNRRYDPAFLSSDASLKDALRAQDIVV 129
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS---GDMSRC 183
SF LL+EP V + ++ FW + + + P P R+ + S
Sbjct: 130 ESFAGQLLHEPTRVRTGNDTFYKVYSPFW-RAIEGGIEDREPAPAPDRLTALANAPQSET 188
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
SD + + + L W PG A + L F++ + Y+ R +TS L
Sbjct: 189 LSDWGLLPTKPDWARG--LRETWKPGEDGAHERLDEFVSERVCGYASLRDVPGVESTSRL 246
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SPHL GE++ ++ ++ A + +F K +G RE+S ++ N P
Sbjct: 247 SPHLANGEITPAQIIQALKASDAD-------ASPKDRTVFRKEVGWREFSYHLLVNEPDL 299
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
++ F W DE AW++G TGYP+VDAGMRELW TGW+H+R+R+V +SF
Sbjct: 300 PQQNHNSRFDGFPWKDDETALLAWQKGVTGYPIVDAGMRELWRTGWMHNRVRMVTASFLT 359
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WR G ++FWDTL+DAD S+A WQ+++G+ D + R+ NP +G KFDP+G
Sbjct: 360 KHLMVDWREGERWFWDTLVDADPASNAASWQWVAGSGADAAPYFRVFNPIIQGEKFDPDG 419
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
+YVRR++PELA LP+++IH PW AP+ L AG+ LG YP PIV A+ R
Sbjct: 420 DYVRRYVPELANLPSKFIHKPWTAPDDALAKAGVHLGETYPMPIVDHQQARNR 472
>gi|296105770|ref|YP_003617470.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99
Alcoy]
gi|295647671|gb|ADG23518.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila 2300/99
Alcoy]
Length = 471
Score = 302 bits (774), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 171/479 (35%), Positives = 259/479 (54%), Gaps = 33/479 (6%)
Query: 7 SIVWFRRDLRVEDNPA-LAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFR+DLR+ DNPA + A +I ++I+ ++ G+ WWL HSL L
Sbjct: 4 ALVWFRQDLRLTDNPAFIEACSHHETIIPLYIY---DDKCSVLGQAQAWWLHHSLIALGK 60
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SL G SLV ++ + + +LE+V G +++N Y+P + RD + K AL +GI
Sbjct: 61 SLNQQGLSLVLRKGS-PLEIILELVTQYGLESVYWNRCYEPQVIARDKKIKLALGEKGIK 119
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKR-----INSGDM 180
V SFN +LL+EPW + + G F F +W++C + P +P + KR I S D+
Sbjct: 120 VHSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQILNIP-SPFMLTKRPRGIEITSDDL 178
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
+ + A + W+PG A K L F+ L Y + R T
Sbjct: 179 GKWKLLPAI-------NWAARFSEYWTPGEEGAQKKLNEFVVHHLSGYKRERDFPAKNAT 231
Query: 241 SFLSPHLHFGEVS---VRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
S LSPHLHFGE+S + + L +++Q S+ FL +G RE+S Y+
Sbjct: 232 SRLSPHLHFGEISPWVILRALELAKLEQT--------CDLASLEHFLSELGWREFSVYLL 283
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
++ P F W DE W++G TGYP++DAGMRELWATG++H+R+R++
Sbjct: 284 YHFPKLDCENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMI 343
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V+SF K L + WR G ++F DTL+DADL +++ WQ+++G D + RI NP +
Sbjct: 344 VASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQ 403
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFDP+G Y+R+W+PELA+L ++ IH PW A+ I LG YP PI+ A+ +
Sbjct: 404 KFDPDGVYIRQWIPELAQLNSQSIHQPWTDA----NASSIFLGKKYPKPIIDHQEARTK 458
>gi|387906116|ref|YP_006336453.1| Deoxyribodipyrimidine photolyase [Burkholderia sp. KJ006]
gi|387581008|gb|AFJ89722.1| Deoxyribodipyrimidine photolyase [Burkholderia sp. KJ006]
Length = 505
Score = 302 bits (773), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 178/487 (36%), Positives = 248/487 (50%), Gaps = 11/487 (2%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFR D R+ DNPAL + G V+ V++ + G RWWL SLS LD +
Sbjct: 14 VVWFRDDQRLADNPALTHALDTGHPVVCVYVHDAAPKHGRAMGGAQRWWLHESLSKLDDA 73
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L + G SL+ R + ++ A GA + +N Y D K L +GIAV
Sbjct: 74 LAAHGGSLILLRGNEH-EAITGFASAIGAAMVVWNRRYAKAQTGTDASIKRDLIDRGIAV 132
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
+FN LL EPW V +G PF F+A+W F P PL P I + +
Sbjct: 133 STFNGHLLREPWTVTTREGLPFQVFSAYWRAARRDDFFPPVPLPAPSHIRFFPVPAHATP 192
Query: 187 TLVFEDESEKGSNAL-----LARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
+ E E +A L W G A L F+ L +Y R + TS
Sbjct: 193 HVCTLRELELQPSAPDWAGGLRETWQCGEQAASDQLEAFLENSLSDYPTLRDFPAARATS 252
Query: 242 FLSPHLHFGEVSVRKVFHLV----RIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
LSP+L FG +SVR+V++ + + G + D +N FL IG RE+S ++
Sbjct: 253 RLSPYLRFGNISVRQVWYATLSAADAMRSAHTVRGIDSKDGPLNKFLSEIGWREFSYHLL 312
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
++ H+ W D + W+ GRTGYPLVDAGMRELW TGW+H+R+R+V
Sbjct: 313 YHFAPLHQVNFRRQFDSMPWRDDAKSLRKWQTGRTGYPLVDAGMRELWHTGWMHNRVRMV 372
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
+SF K L + WR G +FWDTL+DAD S+ WQ++SG+ D + RI NP +
Sbjct: 373 AASFLSKHLLIDWRQGEAWFWDTLVDADEASNPASWQWVSGSGADAAPYFRIFNPVLQAQ 432
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
KFDP+G+Y RRW+PELA+L + +H PW A LQ A + LG +YP PIV A+ R
Sbjct: 433 KFDPHGDYTRRWVPELAQLSADTVHAPWAASREQLQRASVTLGRSYPMPIVDHQCARARA 492
Query: 478 DEALSEM 484
E++ +
Sbjct: 493 LESVKRL 499
>gi|39936242|ref|NP_948518.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
CGA009]
gi|39650097|emb|CAE28620.1| Deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris
CGA009]
Length = 483
Score = 302 bits (773), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 184/484 (38%), Positives = 259/484 (53%), Gaps = 15/484 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
IVWFR DLR+ D+PAL A ++GA V+ V++ + G RWWL SL L+S
Sbjct: 11 IVWFRDDLRLADHPALHAAAQSGAPVLCVYVLDEVSDDVRALGGAVRWWLAQSLRALESE 70
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
LR+LG +L+ +R + + L E+ + A + +N + +ALT GIA
Sbjct: 71 LRALGGALILRRGP-TAAVLAELAQQHDAAAVHWNEIEIAAHRAVADALADALTVAGIAY 129
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
D L EP + G+ F FW + LS+ DP PL P + P++
Sbjct: 130 HRHRGDTLVEPSAIRSKDGRGMRVFTPFWRRVLSL-GDPPQPLPRPTTLRPAPA--VPTE 186
Query: 187 TLV---FEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
L E + + L + W+PG + A L F+ Y++ R D TS L
Sbjct: 187 QLSDWQLEPTAPDWAGGL-RQTWTPGEAAAQTRLAAFL-AMQPGYAEGRDYPDRHITSGL 244
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SPHL FGE+S R+V++ R A A ++ FL +G RE+ R++ F+HP
Sbjct: 245 SPHLRFGEISPRQVWYAARF-----AAAERPAIAPDIDKFLSEVGWREFCRHLLFDHPDL 299
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
R L F W D+ AW++GRTGYP+VDAGMRELW +G +H+R+R+VV SF V
Sbjct: 300 ASRNLQPAFDAFPWQSDDAVLTAWQRGRTGYPIVDAGMRELWHSGVMHNRVRMVVGSFLV 359
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WR G ++FWDTL+DAD S+ WQ+++G D + R+ NP + KFD G
Sbjct: 360 KHLLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRVFNPVLQSEKFDAGG 419
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSE 483
Y+RRW+PELARLP + IH PW A L AAGI+LG NYP PIV + R A +E
Sbjct: 420 AYIRRWVPELARLPNDLIHQPWTATPLELAAAGIKLGGNYPGPIVDHKTGRQRALSAYAE 479
Query: 484 MWQQ 487
+ Q+
Sbjct: 480 LRQR 483
>gi|13476703|ref|NP_108272.1| blue light photoreceptor cryptochrome [Mesorhizobium loti
MAFF303099]
gi|14027464|dbj|BAB53733.1| blue light photoreceptor cryptochrome [Mesorhizobium loti
MAFF303099]
Length = 477
Score = 301 bits (772), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 183/475 (38%), Positives = 261/475 (54%), Gaps = 21/475 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IV FRRDLR+ DN ALAA G V+A++I +G G SRWWL HSL+ L
Sbjct: 9 TIVLFRRDLRMGDNAALAAAAERGVPVVALYILDETTKGLRAMGAASRWWLHHSLAALGD 68
Query: 66 SLRSLGTSLVTK--RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
LR G +L R+ D+V+ + + A+GA +F+N YDP + D R K AL +G
Sbjct: 69 LLRKAGANLFLAHGRTEDAVA---KAIDASGANCVFWNRRYDPSEVAVDARLKAALREKG 125
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS--GDMS 181
+ SF+ LL+EP + G + F FW K ++ D P+ P +I+ G++
Sbjct: 126 LTALSFDGALLHEPSLLKTGSGGFYKVFTPFW-KAMADKVDVRDPIDTPGQIDGWRGELG 184
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
D L + L W+PG A L FI L Y + R +TS
Sbjct: 185 GLRLDELDLLPSKPDWAYGL-RETWTPGEKGAQARLGQFIEHGLANYERQRDYPGQPSTS 243
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSPHL FGE++ ++F +R + S + F IG RE+S ++ F++P
Sbjct: 244 RLSPHLTFGEITPFQIFAALRRSKSS-----------GTSKFRAEIGWREFSYHLLFHNP 292
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
R SW D + W++G TGYP+VDAGMRELW TGW+H+R+R++V+SF
Sbjct: 293 DLSGRNFRPEFDAMSWRDDIRALRTWQRGLTGYPIVDAGMRELWRTGWMHNRVRMIVASF 352
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
+K L + WR G K+FWDTL+DAD ++ WQ+++G+ D + RI NP +G KFDP
Sbjct: 353 LIKDLMIDWRHGEKWFWDTLVDADAANNPASWQWVAGSGADPAPYFRIFNPVLQGEKFDP 412
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
+G+YVR+ +PE++ LP +IH PW AP +VL+ GI LG YP PIV AA+ R
Sbjct: 413 HGDYVRQHVPEISALPDRYIHRPWEAPAAVLKDKGIVLGKTYPNPIVDHGAARER 467
>gi|54296244|ref|YP_122613.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris]
gi|53750029|emb|CAH11419.1| hypothetical protein lpp0271 [Legionella pneumophila str. Paris]
Length = 471
Score = 301 bits (772), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 175/479 (36%), Positives = 257/479 (53%), Gaps = 33/479 (6%)
Query: 7 SIVWFRRDLRVEDNPA-LAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFR+DLR+ DNPA + A VI ++I+ ++ G+ WWL HSL L
Sbjct: 4 ALVWFRQDLRLTDNPAFIEACSHHEIVIPLYIY---DDKCSVLGQAQAWWLHHSLIALGK 60
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SL G SLV R D +LE+V G +++N Y+P + RD + K AL + I
Sbjct: 61 SLNQQGLSLVL-RKGDPQEIILELVAQYGVESVYWNRCYEPQVIARDKKIKLALGEREIK 119
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKR-----INSGDM 180
V+SFN +LL+EPW + + G F F +W++C + P +P + KR I S D+
Sbjct: 120 VQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQILNIP-SPFMLTKRPRGIEITSDDL 178
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
+ + A + W+PG A K L FI L Y + R T
Sbjct: 179 GKWKLLPAI-------NWAARFSEYWTPGEEGAQKKLDEFIVHHLSGYKRERDFPAKNAT 231
Query: 241 SFLSPHLHFGEVS---VRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
S LSPHLHFGE+S + + L +++Q SV FL +G RE+S Y+
Sbjct: 232 SRLSPHLHFGEISPWVILRALELAKLEQT--------CDLASVEHFLSELGWREFSVYLL 283
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
++ P F W DE W++G TGYP++DAGMRELWATG++H+R+R++
Sbjct: 284 YHFPKLDCENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMI 343
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V+SF K L + WR G ++F DTL+DADL +++ WQ+++G D + RI NP +
Sbjct: 344 VASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQ 403
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFDP+G Y+R+W+PELA+L ++ IH PW + A I LG YP PI+ A+ +
Sbjct: 404 KFDPDGIYIRQWIPELAQLNSQSIHQPWTDAD----ANSIFLGKKYPKPIIDHQEARTK 458
>gi|348029287|ref|YP_004871973.1| DNA photolyase [Glaciecola nitratireducens FR1064]
gi|347946630|gb|AEP29980.1| DNA photolyase [Glaciecola nitratireducens FR1064]
Length = 481
Score = 301 bits (772), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 176/479 (36%), Positives = 261/479 (54%), Gaps = 13/479 (2%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IVWFR+DLR+ DNPAL+ G++I VFI + G S+WWL HSL SL
Sbjct: 10 IVWFRQDLRITDNPALSLAADNGSIIPVFILDDDAPAEAVLGGASKWWLHHSLL----SL 65
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
++ + R + +S L ++ + A + +N LY+P RD K L I +
Sbjct: 66 SKSLSNKLIIRRGNPLSILSDIAEEFSADTVVWNRLYEPWQRSRDENIKTELKKNNINAK 125
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEK-CLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
S N LL+EP V P+ F ++ K CL+ P PL P +++ + +D
Sbjct: 126 SLNGSLLWEPMSVLKKDETPYKVFTPYYRKGCLTRQ-APRFPLTKPAQMDIAEGVEFSND 184
Query: 187 TLV-FEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
L+ E + + W PG A L FIN Y R TS LSP
Sbjct: 185 ALLSLELIPKIEWYKEIEAQWEPGEEGAANRLQRFINDAATSYQDARNLPAVKGTSLLSP 244
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
HLHFGEVS + ++ ++ N ++ ++++L +G RE+S Y+ F+ P
Sbjct: 245 HLHFGEVSPNQAWYAIQ------GAFENAFDNKDLDVYLSELGWREFSYYLLFHWPEIQH 298
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
+ FSW KAW+ G TG P++DAGMREL+ TG++H+RIR+VV SF VK
Sbjct: 299 KNFNAKFDHFSWRSSVDDLKAWQFGNTGVPIIDAGMRELYQTGYMHNRIRMVVGSFLVKN 358
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
L + WR G ++FWDTLLDAD+ S++ GWQ+++G+ D + R+ NP +G KFD GEY
Sbjct: 359 LLIDWREGERWFWDTLLDADMASNSSGWQWVAGSGADAAPYFRVFNPILQGEKFDKEGEY 418
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
V+++ PEL +LP ++IH PW AP +L+A GIELG +YP PIV + ++ R +A +++
Sbjct: 419 VKQYCPELKKLPKKFIHKPWEAPAEILKACGIELGKDYPKPIVDLKESRKRALDAFAQL 477
>gi|148358421|ref|YP_001249628.1| deoxyribodipyrimidine photolyase [Legionella pneumophila str.
Corby]
gi|148280194|gb|ABQ54282.1| deoxyribodipyrimidine photolyase [Legionella pneumophila str.
Corby]
Length = 471
Score = 301 bits (771), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 174/481 (36%), Positives = 259/481 (53%), Gaps = 37/481 (7%)
Query: 7 SIVWFRRDLRVEDNPA-LAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFR+DLR+ DNPA + A VI ++I+ ++ G+ WWL HSL L
Sbjct: 4 ALVWFRQDLRLTDNPAFIEACSHHEIVIPLYIY---DDKCSVLGQAQAWWLHHSLIALGK 60
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SL G SLV ++ + +LE+V G +++N Y+P RD + K AL + I
Sbjct: 61 SLNQQGLSLVLRKGSPQ-EIILELVSQYGVESVYWNRCYEPPVFARDKKIKLALGEREIK 119
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
+SFN +LL+EPW + + G F F +W++C + P +PL+ KR P
Sbjct: 120 AQSFNGNLLHEPWAIKNKNGDFFKVFTPYWKQCRQILNIP-SPLMLTKR---------PR 169
Query: 186 DTLVFEDESEKGS-------NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
+ D+ +K A + W+PG A K L FI L Y ++R
Sbjct: 170 GIEITSDDIDKWKLLPAINWAARFSEYWTPGEKGAQKKLDEFIIHHLSGYKRDRDFPAKN 229
Query: 239 TTSFLSPHLHFGEVS---VRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
TS LSPHLHFGE+S + + L +++Q SV FL +G RE+S Y
Sbjct: 230 ATSRLSPHLHFGEISPWVILRALELTKLEQT--------CDLASVEHFLSELGWREFSVY 281
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+ ++ P F W DE W++G TGYPL+DAGMRELWATG++H+R+R
Sbjct: 282 LLYHFPKLDCENFRNEFDAFPWQNDEQLLTRWQKGMTGYPLIDAGMRELWATGYMHNRVR 341
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++V+SF K L + WR G ++F DTL+DADL +++ WQ+++G D + RI NP +
Sbjct: 342 MIVASFLTKDLLIDWRLGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQ 401
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
KFDP+G Y+R+W+PELA+L ++ IH PW A+ I LG+ YP PI+ A+
Sbjct: 402 SQKFDPDGVYIRQWIPELAQLNSQSIHQPWTDAS----ASSIFLGNKYPKPIINHQEART 457
Query: 476 R 476
+
Sbjct: 458 K 458
>gi|440226410|ref|YP_007333501.1| deoxyribodipyrimidine photo-lyase [Rhizobium tropici CIAT 899]
gi|440037921|gb|AGB70955.1| deoxyribodipyrimidine photo-lyase [Rhizobium tropici CIAT 899]
Length = 485
Score = 301 bits (770), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 178/475 (37%), Positives = 272/475 (57%), Gaps = 19/475 (4%)
Query: 8 IVWFRRDLRVEDNPAL-AAGVRAGAVIAVFIWAP--EEEGPYYPGRVSRWWLKHSLSHLD 64
++WFR+DLR++DN AL +A + +I V+I P E GP G WWL +SL+ L
Sbjct: 12 LLWFRKDLRLDDNHALQSAATSSRPLIPVYIREPGVTERGPL--GGAQEWWLHYSLAALQ 69
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+L ++G+ L+ R ++++ L ++VK TGA + +N YDP + D + K+AL ++GI
Sbjct: 70 IALDAVGSKLIL-RHGEALTVLEKLVKETGAEAVVWNRRYDPAGVEVDTQIKKALRSKGI 128
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
SF LL+EP + G + T+ FW + +P P+ P+R+ + R P
Sbjct: 129 EANSFAGQLLHEPTRLRTGTGNHYKTYTPFW-RAFEQSGEPPFPIEAPRRLLAP--GRWP 185
Query: 185 -SDTLVFEDESEKGSN--ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
SD+L N + A W+PG + A L F++G L +Y+ R D TS
Sbjct: 186 QSDSLDAWSLLPAKPNWASEFADIWTPGEAAALDKLKDFVDGALNDYAIGRDFPDKPATS 245
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSPHL GE+S +++H R +K G ++V F K I RE+ + F+ P
Sbjct: 246 LLSPHLALGEISPARMWHATR-------GLPDKVGTDNVVRFRKEIIWREFCYHQLFHFP 298
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
F W+ D K+W++G+TGYP+VDAGMR+LW GW+H+R+R++ +SF
Sbjct: 299 KLRTANWNDRYDDFPWLSDAKRLKSWQRGQTGYPIVDAGMRQLWRHGWMHNRVRMIAASF 358
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
+K L + WR G +F DTL+DAD ++ WQ+++G+ D F RI NP +G KFDP
Sbjct: 359 LIKDLLIDWREGEAWFRDTLVDADPAANTANWQWVAGSGADASPFFRIFNPVLQGEKFDP 418
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
+G YVR ++PEL++L +++IH P+ AP+ VL+ AGIELG +YP PIV A+ R
Sbjct: 419 DGGYVRTFVPELSKLDSKYIHRPFEAPDDVLKRAGIELGRHYPRPIVDHAMARQR 473
>gi|241204354|ref|YP_002975450.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240858244|gb|ACS55911.1| Deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 482
Score = 301 bits (770), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 175/472 (37%), Positives = 253/472 (53%), Gaps = 14/472 (2%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I+WFR+DLR++DN AL A R+G +I ++I P G G WWL HSL L+ S
Sbjct: 10 ILWFRKDLRLDDNQALTAAHRSGRPIIPLYIREPAAAGTGPLGAAQAWWLHHSLEALNRS 69
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L+ L LV S +++ L +K + A +F+N YDP + D R K L Q I
Sbjct: 70 LQKLNGRLVLA-SGEALEVLCAFIKESAAEAVFWNRRYDPAGISIDARIKHELEKQAIEA 128
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPK--RINSGDMSRCP 184
RSF LL+EP + G P+ + FW + L +P+ PL P R+ S S
Sbjct: 129 RSFGGQLLHEPSRLMTGNGTPYRVYTPFW-RALEGGGEPEPPLDAPAKLRLASQPKSEVL 187
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
+ + + + W+PG A + L F+ L Y +NR TS LS
Sbjct: 188 GSWKLLPTKPDWAGD--FVDLWTPGEEGAQQRLHVFVEDALEGYKENRDYPARPATSMLS 245
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
PHL GE+S +++ R + + F + I RE+S ++ F+ P
Sbjct: 246 PHLALGEISPARIWDATR-------GLSQRVPAADIVHFREEIAWREFSYHLLFHFPRLA 298
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
F W + G F+AWR+G TGYP+VDAGMR+LW GW+H+R+R++V+SF +K
Sbjct: 299 SANWNDRFDGFEWRNNSGDFEAWRRGMTGYPIVDAGMRQLWRHGWMHNRVRMIVASFLIK 358
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L + WR G +F DTL+DAD ++A WQ+++G+ D F RI NP +G KFDP+G+
Sbjct: 359 DLMIDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQGEKFDPDGD 418
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
YVR ++PEL L ++IH P+ AP+S+L AGI LG YP PIV +A+ R
Sbjct: 419 YVRTYVPELRELGPKYIHRPFEAPKSMLDEAGITLGQTYPKPIVDHASARNR 470
>gi|54293218|ref|YP_125633.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens]
gi|53753050|emb|CAH14497.1| hypothetical protein lpl0266 [Legionella pneumophila str. Lens]
Length = 471
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 172/479 (35%), Positives = 258/479 (53%), Gaps = 33/479 (6%)
Query: 7 SIVWFRRDLRVEDNPA-LAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFR+DLR+ DNPA + A VI ++I+ ++ G+ WWL HSL L
Sbjct: 4 ALVWFRQDLRLTDNPAFIEACSHHEIVIPLYIY---DDKCSVLGQAQAWWLHHSLIALGK 60
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SL G LV ++ +LE+V G +++N Y+P ++ RD + K AL + I
Sbjct: 61 SLNQQGLCLVLRKGAPQ-EIILELVAQYGVESVYWNRCYEPQAIARDKKIKLALGEREIK 119
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKR-----INSGDM 180
V+SFN +LL+EPW + + G F F +W++C + P +P + KR I S D+
Sbjct: 120 VQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQILNIP-SPFMLTKRPRGIKITSDDL 178
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
+ + A + W+PG A K L FI L Y + R T
Sbjct: 179 GKWKLLPAI-------NWAARFSEYWTPGEEGAQKKLDEFIVHHLSGYKRERDFPAKNAT 231
Query: 241 SFLSPHLHFGEVS---VRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
S LSPHLHFGE+S + + L +++Q SV FL +G RE+S Y+
Sbjct: 232 SRLSPHLHFGEISPWVILRALELAKLEQT--------CDLASVEHFLSELGWREFSVYLL 283
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
++ P F W DE W++G TGYP++DAGMRELWATG++H+R+R++
Sbjct: 284 YHFPKLDCENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMI 343
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V+SF K L + WR G ++F DTL+DADL +++ WQ+++G D + RI NP +
Sbjct: 344 VASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQ 403
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFDP+G Y+R+W+PELA+L ++ IH PW + A+ I LG YP PI+ A+ +
Sbjct: 404 KFDPDGVYIRQWIPELAQLNSQSIHQPWTDAD----ASSIFLGKKYPKPIIDHQEARTK 458
>gi|397665892|ref|YP_006507429.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
gi|395129303|emb|CCD07533.1| Deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
Length = 471
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 173/479 (36%), Positives = 258/479 (53%), Gaps = 33/479 (6%)
Query: 7 SIVWFRRDLRVEDNPA-LAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFR+DLR+ DNPA + A VI ++I+ ++ G+ WWL HSL L
Sbjct: 4 ALVWFRQDLRLTDNPAFIEACFHHEIVIPLYIY---DDKCSVLGQAQAWWLHHSLIALGK 60
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SL G SLV ++ + +LE+V G +++N Y+P + RD + K AL + I
Sbjct: 61 SLNQQGLSLVLRKGSPQ-EIILELVAQYGVESVYWNRCYEPQVIARDKKIKLALGEREIK 119
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKR-----INSGDM 180
V+SFN +LL+EPW + + G F F +W++C + P +P + KR I S D+
Sbjct: 120 VQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQILNIP-SPFMLTKRPRGIEITSDDL 178
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
+ + A + W+PG A K L FI L Y + R T
Sbjct: 179 GKWKLLPAI-------NWAARFSEYWTPGEEGAQKKLDEFIVHNLSGYKRERDFPAKNAT 231
Query: 241 SFLSPHLHFGEVS---VRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
S LSPHLHFGE+S + + L +++Q SV FL +G RE+S Y+
Sbjct: 232 SRLSPHLHFGEISPWVILRALELAKLEQT--------CDLASVEHFLSELGWREFSVYLL 283
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
++ P F W DE W++G TGYP++DAGMRELWATG++H+R+R++
Sbjct: 284 YHFPKLDCENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMI 343
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V+SF K L + WR G ++F DTL+DADL +++ WQ+++G D + RI NP +
Sbjct: 344 VASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQ 403
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFDP+G Y+R+W+PELA+L ++ IH PW + A I LG YP PI+ A+ +
Sbjct: 404 KFDPDGIYIRQWIPELAQLNSQSIHQPWTDAD----ANSIFLGKKYPKPIIDHQEARTK 458
>gi|335035151|ref|ZP_08528494.1| DNA photolyase [Agrobacterium sp. ATCC 31749]
gi|333793582|gb|EGL64936.1| DNA photolyase [Agrobacterium sp. ATCC 31749]
Length = 479
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 182/473 (38%), Positives = 258/473 (54%), Gaps = 20/473 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGV-RAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
IVWFR+DLR+ DN AL A V G VI V+I + GP G WWL HSL+ L SS
Sbjct: 9 IVWFRKDLRLSDNLALLAAVEHGGPVIPVYI-REKSAGPL--GGAQEWWLHHSLAALSSS 65
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L G LV S D+ L +++ TGA + +N YDP + D K+ L G+ V
Sbjct: 66 LEKAGGRLVLA-SGDAERILRDLISETGADTVVWNRRYDPTGMATDKAFKQKLRDDGLTV 124
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM---SRC 183
+SF+ LL+EP + G P+ + F + L +P AP PK + + ++ S
Sbjct: 125 QSFSGQLLHEPSRLQTKSGGPYRVYTPF-RRALEGGEEPHAPADAPKSLKAPEVWPKSEK 183
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
+D + + + + + W+PG + A L FI+G L Y + R TS L
Sbjct: 184 LADWKLLPTKPDWAKD--FSDIWTPGENGAKDKLDDFIDGALKGYEEGRDFPAKPATSLL 241
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
S HL GE+S V+H + ++ F K I RE+ ++ F+ P
Sbjct: 242 SSHLAAGEISPAAVWHATK-------GLSRHIASNDISRFRKEIVWREFCYHLLFHFPEL 294
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
E+ F W DE FKAW +G TGYP+VDAGMR+LW G +H+R+R++V+SF +
Sbjct: 295 DEKNWNDSFDAFPWRDDETSFKAWTRGMTGYPIVDAGMRQLWQHGIMHNRVRMIVASFLI 354
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WR G K+F DTL+DAD S+A WQ+++G+ D F RI NP +G KFD +G
Sbjct: 355 KHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPILQGEKFDGDG 414
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
+YVRR++PEL +L ++IH P+ AP+ VL+ AG+ELG YP PIV D K R
Sbjct: 415 DYVRRFVPELEKLERKYIHKPFEAPKDVLKKAGVELGKTYPLPIV--DHGKAR 465
>gi|386718155|ref|YP_006184481.1| Deoxyribodipyrimidine photolyase [Stenotrophomonas maltophilia
D457]
gi|384077717|emb|CCH12306.1| Deoxyribodipyrimidine photolyase [Stenotrophomonas maltophilia
D457]
Length = 471
Score = 300 bits (768), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 168/446 (37%), Positives = 251/446 (56%), Gaps = 15/446 (3%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
++VWFRRDLR++DNPAL A + AG V+ V++ AP E+G + PG S W SL LD
Sbjct: 3 VALVWFRRDLRLQDNPALQAALDAGHDVVPVYLHAPHEDGEWLPGAASDAWRHRSLGALD 62
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ LR+ G+SLV RS DS+ +L ++ TGA +++N Y+P + RD K L QGI
Sbjct: 63 ADLRTRGSSLVL-RSGDSLPALQLLIGQTGAEAVYWNRKYEPATQARDATIKRTLREQGI 121
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
+S N LL+EPWD+ QGQP+ F +W LS P PK + + +
Sbjct: 122 DAQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHWRLPTLSA-APKALTAHSVDGLA 180
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
D L + S W PG + A +AL+ F +G L Y + R D TS LS
Sbjct: 181 LDELRLAPTLDWDSG--FWEHWQPGEAGALEALSVFEDGALRGYREQRDLPDRVGTSRLS 238
Query: 245 PHLHFGEVSVRKVFH-LVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
PHLHFGE++ ++ H L R++ + D ++ +L+ +G R+++ ++ + P +
Sbjct: 239 PHLHFGEIAPWRIAHALERLR--------SAGTDADIDGYLRQLGWRDFAYHLLHHFPKT 290
Query: 304 HERPLLGHLKFFSWVV-DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
L F W W++G TG P+VDAG+RELW TG++H+R+R++V+S+
Sbjct: 291 PTDNLNPRFDRFPWATPTAAQLHDWQRGNTGVPIVDAGLRELWHTGYMHNRVRMIVASYL 350
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
K L+ W G ++FWDTL+DADL ++ +GWQ+++GT D + R+ NP + KFDP
Sbjct: 351 CKHLRAHWLQGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEKFDPQ 410
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAP 448
Y+ RW+PELA LP + PW P
Sbjct: 411 ARYISRWVPELAALPVKARFAPWQHP 436
>gi|116251748|ref|YP_767586.1| deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum bv.
viciae 3841]
gi|115256396|emb|CAK07478.1| putative deoxyribodipyrimidine photo-lyase [Rhizobium leguminosarum
bv. viciae 3841]
Length = 483
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 179/481 (37%), Positives = 257/481 (53%), Gaps = 19/481 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I+WFR+DLR++DN AL A R+G +I ++I P G G WWL HSL L+ S
Sbjct: 10 ILWFRKDLRLDDNQALTAAHRSGRPIIPLYIGEPAAAGTGPLGAAQAWWLHHSLEALNRS 69
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L+ LV S +++ L +K +GA +F+N YDP + D R K L Q I
Sbjct: 70 LQKRHGRLVLA-SGEALEVLRAFIKESGAEAVFWNRRYDPAGISIDARIKHELEKQAIEA 128
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP-S 185
RSF LL+EP + G P+ + FW + L +P+ PL P + S+ P S
Sbjct: 129 RSFGGQLLHEPSRLMTGNGTPYRVYTPFW-RALEGGDEPEPPLEAPAELRL--TSQLPTS 185
Query: 186 DTL----VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
+TL + + + + W+PG A + L F+ L Y +NR TS
Sbjct: 186 ETLESWKLLPTKPDWAGD--FVDLWTPGEEGAQQRLHAFVEDALEGYKENRDYPARPATS 243
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSPHL GE+S +++ R + + F K I RE+S ++ F+ P
Sbjct: 244 MLSPHLALGEISPARIWDATR-------GLSQRVPAADIVHFRKEIAWREFSYHLLFHFP 296
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
W D F+AWR+G TGYP+VDAGMR+LW GW+H+R+R++V+SF
Sbjct: 297 RLASANWNDRFDGLEWCNDSDDFEAWRRGMTGYPIVDAGMRQLWRHGWMHNRVRMIVASF 356
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
+K L + WR G +F DTL+DAD ++A WQ+++G+ D F RI NP +G KFDP
Sbjct: 357 LIKDLMIDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQGEKFDP 416
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
NG+YV+ ++PEL L ++IH P+ AP+S+L AGI LG YP PIV +A+ R A
Sbjct: 417 NGDYVKTYVPELRELGAKYIHRPFEAPKSMLDEAGITLGQTYPRPIVDHASARNRALAAY 476
Query: 482 S 482
S
Sbjct: 477 S 477
>gi|408380523|ref|ZP_11178107.1| deoxyribodipyrimidine photo-lyase [Agrobacterium albertimagni
AOL15]
gi|407745736|gb|EKF57268.1| deoxyribodipyrimidine photo-lyase [Agrobacterium albertimagni
AOL15]
Length = 492
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 183/481 (38%), Positives = 263/481 (54%), Gaps = 22/481 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I+WFR+DLR+ D+ ALA V G ++ ++I PE G G WWL HSL L +S
Sbjct: 20 ILWFRKDLRISDHAALATAVDEGFRIVPLYIREPEHAGTGPLGAAQAWWLHHSLEALSAS 79
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L +LG SLV RS + ++L +++ TGA+ +F+N YDP + D K L A GI V
Sbjct: 80 LDALGASLVL-RSGAADAALSDLITETGASAVFWNRRYDPSGISVDKALKAKLIADGIEV 138
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM-----S 181
R+F +L+EP + G F + FW K L +P P+ PK + + +
Sbjct: 139 RTFAGQILHEPTKLKTGAGGHFRVYTPFW-KALDGSGEPPEPIPAPKALPAPEHWPKSEK 197
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
D L + KG + W PG A K L FI L Y R A S
Sbjct: 198 LSDWDLLPTKPNWAKGFES----EWQPGEDGARKRLADFIASGLKGYRTRRDFPGEAHVS 253
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSPHL GE+S V+H R S+++E F K + R++S ++ F+ P
Sbjct: 254 MLSPHLALGEISPASVWHATRGLSDSYSSE-------DYIHFRKELVWRDFSYHLLFHFP 306
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ F W + WR+G+TGYP++DAGMR+LW TG++H+R+R++V+SF
Sbjct: 307 DLATKNWNTKFDAFPWRHAPDLLEKWRKGQTGYPIIDAGMRQLWQTGFMHNRVRMIVASF 366
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
+K L + WR G ++F DTL+DAD S+A WQ+++G+ D F RI NP +G KFDP
Sbjct: 367 LIKDLLIDWREGERWFRDTLVDADPASNAASWQWVAGSGADAAPFFRIFNPISQGEKFDP 426
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
G YVRR++PEL +P ++IH P++AP +VL+ AG+ LG YP PIV D K R D A+
Sbjct: 427 EGAYVRRFVPELKAMPDKFIHKPFDAPFAVLKEAGVSLGKTYPQPIV--DHGKAR-DAAM 483
Query: 482 S 482
+
Sbjct: 484 A 484
>gi|161522875|ref|YP_001585804.1| deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC
17616]
gi|189348291|ref|YP_001941487.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC
17616]
gi|160346428|gb|ABX19512.1| Deoxyribodipyrimidine photo-lyase [Burkholderia multivorans ATCC
17616]
gi|189338429|dbj|BAG47497.1| deoxyribodipyrimidine photo lyase [Burkholderia multivorans ATCC
17616]
Length = 505
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 183/495 (36%), Positives = 260/495 (52%), Gaps = 15/495 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFR D R+ DNPAL V +G V+ V++ P G RWWL SL LD +
Sbjct: 14 VVWFRDDQRLGDNPALCHAVASGHPVVCVYVHDPAPSIRRPMGGAQRWWLHESLGKLDDA 73
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L +LG SL+ R D ++ + GA ++ +N Y D K+ L +GIAV
Sbjct: 74 LSALGGSLIVLRG-DEHEAIRDFAVGIGAAKVVWNRRYSKAHTGTDASIKQDLVGRGIAV 132
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI------NSGDM 180
+FN LL+EPW V +G P+ F+A+W P PL P RI ++
Sbjct: 133 STFNGHLLHEPWTVLTREGLPYQVFSAYWRAACRDDLSPPPPLPAPSRIAFFPVPHNVTP 192
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
C L + + ++ L W G A + L F+ L +Y+ R + T
Sbjct: 193 HVCTLRALGLQPTAPDWASGLRL-TWRCGEEAARQRLDAFLEHSLRDYADMRDLPAAHAT 251
Query: 241 SFLSPHLHFGEVSVRKVFHLVR-----IKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
S LSP+L FG +SVR+V++ +++ A+ G+ +N FL IG RE+S +
Sbjct: 252 SRLSPYLRFGNISVRQVWYAASSAASAMQRTRKADLGDPQSG-PLNKFLSEIGWREFSYH 310
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+ ++ P H+ W D + W+ G TGYPLVDAGMRELW TGW+H+R+R
Sbjct: 311 LLYHFPPLHQVNFRRQFDSMPWRDDPNALRKWQTGHTGYPLVDAGMRELWHTGWMHNRVR 370
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
+VV+SF K L + WR G +FWDTL+DAD S+ WQ++SG+ D + RI NP +
Sbjct: 371 MVVASFLSKHLLIDWREGEAWFWDTLVDADEASNPASWQWVSGSGADAAPYFRIFNPVLQ 430
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFDP GEY R W+PEL+++ E IH PW A L A + LG YPFPIV AA+
Sbjct: 431 GQKFDPQGEYTRHWVPELSKMSAEKIHAPWTASAEQLHDACVSLGRTYPFPIVDHQAART 490
Query: 476 RLDEALSEMWQQEAA 490
R E++ + Q+ A
Sbjct: 491 RALESVKRVDSQKNA 505
>gi|408823943|ref|ZP_11208833.1| deoxyribodipyrimidine photo-lyase [Pseudomonas geniculata N1]
Length = 471
Score = 299 bits (766), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 169/451 (37%), Positives = 256/451 (56%), Gaps = 23/451 (5%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
++VWFRRDLR++DNPAL A + AG V+ V+I AP EEG + PG S W SL+ LD
Sbjct: 3 VALVWFRRDLRLQDNPALQAALDAGHDVVPVYIHAPHEEGGWAPGAASDAWRHRSLAALD 62
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ LR+ G+SLV RS DS+ +L +++ T A +++N Y+P + RD K L QGI
Sbjct: 63 ADLRTRGSSLVL-RSGDSLPALQLLIEQTDAGAVYWNRKYEPATQPRDATIKRMLREQGI 121
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
+S N LL+EPWD+ QGQP+ F +W LS LP + ++
Sbjct: 122 DAQSCNGSLLFEPWDIATQQGQPYKVFTPYWRNVLSHW------RLPSLQAAPKALAAHA 175
Query: 185 SDTLVFEDESEKGS---NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
D+L +D + + W PG + A +AL+ F +G L Y + R D TS
Sbjct: 176 VDSLALDDLQLAPTLDWDTGFWEHWQPGEAGALEALSVFEDGALRGYREQRDLPDRVGTS 235
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAG--DESVNLFLKSIGLREYSRYMSFN 299
LSPHLHFGE++ ++ H A EG ++ D ++ +L+ +G R+++ ++ +
Sbjct: 236 RLSPHLHFGEIAPWRIAH---------ALEGLRSAGTDADIDGYLRQLGWRDFAYHLLHH 286
Query: 300 HPYSHERPLLGHLKFFSWVV-DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
P + L F W + W++G TG P+VDAG+RELW TG++H+R+R++V
Sbjct: 287 FPKTPTDNLNPRFDRFPWATPSDAQLHDWQRGNTGVPIVDAGLRELWHTGYMHNRVRMIV 346
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+S+ K L+ W G ++FWDTL+DADL ++ +GWQ+++GT D + R+ NP + K
Sbjct: 347 ASYLCKHLRAHWLHGARWFWDTLVDADLANNTMGWQWVAGTGADAAPYFRVFNPVTQAEK 406
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPE 449
FDP Y+ RW+PELA LP + PW P+
Sbjct: 407 FDPQARYISRWVPELAALPVKARFAPWQHPQ 437
>gi|134291309|ref|YP_001115078.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia
vietnamiensis G4]
gi|134134498|gb|ABO58823.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia
vietnamiensis G4]
Length = 505
Score = 299 bits (766), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 178/490 (36%), Positives = 250/490 (51%), Gaps = 17/490 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFR D R+ DNPAL + G V+ V++ + G RWWL SLS LD +
Sbjct: 14 VVWFRDDQRLADNPALTHALDTGHPVVCVYVHDAAPKHGRAMGGAQRWWLHESLSKLDDA 73
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L + G SL+ R + ++ A GA + +N Y D K L +GIAV
Sbjct: 74 LAAHGGSLILLRGNEH-EAITGFAAAIGAAMVVWNRRYAKAQTGTDASIKRDLIDRGIAV 132
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
+FN LL EPW V +G PF F+A+W F P PL P I + +
Sbjct: 133 STFNGHLLREPWTVTTREGLPFQVFSAYWRAARRDDFFPPVPLPAPSHIRFFPVPAHATP 192
Query: 187 TLVFEDESEKGSNAL-----LARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
+ E E +A L W G A L F+ L +Y R + TS
Sbjct: 193 HVCTLRELELQPSAPDWAGGLRETWQCGEQAASDQLEAFLENSLSDYPTLRDFPAARATS 252
Query: 242 FLSPHLHFGEVSVRKVFHL-------VRIKQVSWANEGNKAGDESVNLFLKSIGLREYSR 294
LSP+L FG +SVR+V++ +R ++ G + D ++ FL IG RE+S
Sbjct: 253 RLSPYLRFGNISVRQVWYATLSAADAMRSARIV---RGVDSKDGPLSKFLSEIGWREFSY 309
Query: 295 YMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
++ ++ H+ W D + W+ GRTGYPLVDAGMRELW TGW+H+R+
Sbjct: 310 HLLYHFAPLHQVNFRRQFDSMPWRDDAKSLRKWQTGRTGYPLVDAGMRELWHTGWMHNRV 369
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R+V +SF K L + WR G +FWDTL+DAD S+ WQ++SG+ D + RI NP
Sbjct: 370 RMVAASFLSKHLLIDWRQGEAWFWDTLVDADEASNPASWQWVSGSGADAAPYFRIFNPVL 429
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
+ KFDP+G+Y RRW+PELA+L + +H PW A LQ A + LG +YP PIV A+
Sbjct: 430 QAQKFDPHGDYTRRWVPELAQLSADTVHAPWAASREQLQRASVTLGRSYPMPIVDHQCAR 489
Query: 475 CRLDEALSEM 484
R E++ +
Sbjct: 490 ARALESVKRL 499
>gi|389783153|ref|ZP_10194647.1| deoxyribodipyrimidine photo lyase [Rhodanobacter spathiphylli B39]
gi|388435091|gb|EIL92009.1| deoxyribodipyrimidine photo lyase [Rhodanobacter spathiphylli B39]
Length = 469
Score = 299 bits (765), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 176/470 (37%), Positives = 261/470 (55%), Gaps = 18/470 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++V FRRDLR+ DNPA +A A V+ VFI A +E P G SRWWL H+L LD
Sbjct: 4 ALVLFRRDLRLADNPAWSAACAEHAHVLPVFIHADDEACP--AGSASRWWLHHALRALDR 61
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
LR G +L +R + + L E+++ +GA +++N LY+P ++ RD + K AL GIA
Sbjct: 62 DLRDAGAALHLRRG-ELLDVLRELIRRSGAVAVYWNRLYEPAAISRDTQLKSALRQDGIA 120
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
V S NA L EPW + QGQP+ F +W K L APL P+ ++
Sbjct: 121 VHSHNAALWCEPWRIATGQGQPYKVFTPYWRK-LRPELQAVAPLPAPRVPGWRELPDGLP 179
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
+ + L A W PG + A + L F + + +Y++ R TS LSP
Sbjct: 180 LEALELLPRIDWAGGLRAH-WQPGQAGARELLEIFADDAINDYARARDLPARHGTSRLSP 238
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
HLHFGE+S R++ + + + A + + D + FL+ +G RE++ ++ F+ PY+
Sbjct: 239 HLHFGEISPRQIH--FELDRRAGAIDTRRRPD--LEPFLRELGWREFAHHLLFHFPYTPT 294
Query: 306 RPLLGHLKFFSWVVD-EGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
F+W D E + W++GRTG PLVDAGMRELW TGW+H+R+R++V+SF K
Sbjct: 295 ENFNPRFNEFAWAADDEVAIERWQRGRTGIPLVDAGMRELWHTGWMHNRVRMIVASFLTK 354
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L+ W G ++F DTL+DADL ++ LGWQ+++G D + R+ NP + KFDP+G
Sbjct: 355 NLRQHWLHGARWFHDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPLTQAKKFDPDGA 414
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
Y+R WLPEL P +H PW + A + S YP P+V + ++
Sbjct: 415 YLRHWLPELGDAPVALLHEPW-------KDAALLRRSGYPAPMVDLGQSR 457
>gi|194334030|ref|YP_002015890.1| deoxyribodipyrimidine photo-lyase [Prosthecochloris aestuarii DSM
271]
gi|194311848|gb|ACF46243.1| Deoxyribodipyrimidine photo-lyase [Prosthecochloris aestuarii DSM
271]
Length = 477
Score = 298 bits (764), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 174/477 (36%), Positives = 261/477 (54%), Gaps = 22/477 (4%)
Query: 4 RGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHL 63
R I WFR+DLR+EDNPAL G V+ V+I G + G +R WL HSL L
Sbjct: 3 RKTVICWFRQDLRLEDNPALFVAAEEGYVLPVYILDDSSPGTWQMGSATRCWLHHSLVSL 62
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
+ RS L R + + L + + A ++ +N Y+P + RD K L A+G
Sbjct: 63 N---RSFDGKLGIFRG-EPLEILKTLARQHKAEKIVWNRCYEPWRMKRDQGIKATLQAEG 118
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I V SFN LL+EP +V P+ F F+ + P PL P+R+ D
Sbjct: 119 IEVSSFNGSLLWEPHEVLKQNNTPYRVFTPFFRRGCLNALPPRTPLPAPQRMLMADTI-- 176
Query: 184 PSDTLVFEDESEKGS---NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
+++ +D + S ++ L WS G ++A ++L F++ L Y + R
Sbjct: 177 -DNSISVQDLNLLPSIPWDSQLISHWSVGENSARQSLLRFLDQGLNGYKEGRDFPGQNHV 235
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGD-ESVNLFLKSIGLREYSRYMSFN 299
S LSP LHFGE+S V++ E + G + ++ FL +G RE++ + ++
Sbjct: 236 SRLSPALHFGELSPNTVWY-----------EAKRCGSGQDLDHFLSELGWREFAYTLLYH 284
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
+ E+ L F WV ++ W+QG TGYPLVDAGMRELW TG++H+R+R++
Sbjct: 285 NHDMPEKNLQSAFDAFPWVHNDETLIRWQQGMTGYPLVDAGMRELWQTGYMHNRVRMITG 344
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L L W +G ++F D LLDADL +++ GWQ+I+G D + R+ NP +G KF
Sbjct: 345 SFLVKNLLLHWHYGQQWFHDCLLDADLANNSAGWQWIAGCGVDAAPYFRVFNPVRQGEKF 404
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
DP+G Y R++PELA+LP +++ +PW AP+++LQ AGI LG YP PIV + ++ R
Sbjct: 405 DPDGTYTLRFVPELAKLPKKYLFNPWEAPKNILQEAGITLGKTYPEPIVDLAISRNR 461
>gi|405377862|ref|ZP_11031797.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF142]
gi|397325650|gb|EJJ29980.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF142]
Length = 484
Score = 298 bits (764), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 178/482 (36%), Positives = 258/482 (53%), Gaps = 33/482 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
IVWFR+DLR++DN AL A +G VI ++I P+E+G G WWL HSL LD++
Sbjct: 11 IVWFRKDLRLDDNRALYAACASGRPVIPLYIREPQEDGTGPLGAAQAWWLHHSLHALDAA 70
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L+ G L+ S + +L ++++ +GA +F+N YDP + D R K Q I
Sbjct: 71 LKKHGGKLILA-SGHARHALADIIRRSGAEAVFWNRRYDPPGIAIDTRLKHEFEKQAIEA 129
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
RSF LL+EP + G + + FW + L +P+AP+ P+R R P
Sbjct: 130 RSFGGQLLHEPTRLKTTSGTSYRVYTPFW-RALEEGGEPEAPVDVPERF------RFPKQ 182
Query: 187 TLVFEDESEKGSNALL----------ARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
F S LL W+PG + A + L+ F+ L YS +R
Sbjct: 183 ---FPASEVLASWKLLPLKPNWAKSFPDMWTPGEAAAQEKLSAFVEDGLSGYSADRDFPG 239
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEG--NKAGDESVNLFLKSIGLREYSR 294
TS LSPHL GE+S +++ A EG + + + F K + RE+S
Sbjct: 240 KTATSLLSPHLALGEISPARIWD---------ATEGLSRRIPSDDIVRFRKELAWREFSY 290
Query: 295 YMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
++ F+ P F W DE F AW G+TGYP+VDAGMR+LW GW+H+R+
Sbjct: 291 HLLFHFPELARDNWNDSFDGFGWREDEDGFHAWCNGQTGYPIVDAGMRQLWRHGWMHNRV 350
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R++ +SF +K L + WR G +F DTL+DAD S+A WQ+++G+ D F RI NP
Sbjct: 351 RMITASFLIKDLLVDWRRGEAWFRDTLVDADPASNAASWQWVAGSGADASPFFRIFNPML 410
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
+G KFD +G Y+R+++PEL +L ++IH P+ AP SVL+ AG+ LG YP PIV A+
Sbjct: 411 QGEKFDADGSYIRQFVPELGKLEDKYIHRPFEAPASVLENAGVTLGKTYPRPIVDHATAR 470
Query: 475 CR 476
R
Sbjct: 471 RR 472
>gi|325923198|ref|ZP_08184882.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas gardneri ATCC
19865]
gi|325546322|gb|EGD17492.1| deoxyribodipyrimidine photo-lyase type I [Xanthomonas gardneri ATCC
19865]
Length = 472
Score = 298 bits (763), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 173/454 (38%), Positives = 269/454 (59%), Gaps = 17/454 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFRRDLR++DNPAL A + AG A I ++I AP EEG + PG SR W SL+ LD+
Sbjct: 4 AIVWFRRDLRLQDNPALRAALDAGHAPIPLYIDAPHEEGEWAPGAASRSWRHRSLAALDA 63
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LR+LG+ LV R+ DS L E+++ TGA +++N Y+P + RD + K +L +GI
Sbjct: 64 ALRALGSGLVI-RAGDSAQVLDEMIEQTGAVAVYWNRKYEPATQPRDAQIKRSLRERGIE 122
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS---MPFDPDAPLLPPKRINSGDMSR 182
V+S NA LL EPW ++ QG P+ F +W L+ +P AP P + +
Sbjct: 123 VQSCNAALLMEPWQLSTQQGGPYKVFTPYWRNALTQLQLPAAVAAPRSLPALPATLKSAA 182
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+ LV + + ++G W PG + A + L FI+G L Y +NR + D TS
Sbjct: 183 LETLGLVPKLDWDQG----FWEHWQPGEAGAHEMLEIFIDGALSGYRENRDRPDRVGTSQ 238
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHLHFGE++ ++ + + N ++ +++ +G R+++ ++ + P
Sbjct: 239 LSPHLHFGEIAPWRIASTLEANR-------NARNSAEIDGYIRQLGWRDFAYHLLHHFPD 291
Query: 303 SHERPLLGHLKFFSWV-VDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ + L + F W VD +AW++GRTG P+VDAGMR+LW TGW+H+R+R++V+S
Sbjct: 292 TTNQNLNPRFEGFDWAKVDPVALQAWQRGRTGIPIVDAGMRQLWHTGWMHNRVRMIVASL 351
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L++ W G ++FW+TL+DADL ++ LGWQ+++GT D + R+ NP + KFDP
Sbjct: 352 LCKHLRIHWIEGARWFWETLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAEKFDP 411
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAA 455
Y+ RW+PEL +L + PW +P S+ + A
Sbjct: 412 QAAYITRWVPELGKLAVKERFAPWLSPLSLARFA 445
>gi|390449652|ref|ZP_10235256.1| DNA photolyase [Nitratireductor aquibiodomus RA22]
gi|389663847|gb|EIM75362.1| DNA photolyase [Nitratireductor aquibiodomus RA22]
Length = 483
Score = 298 bits (763), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 175/483 (36%), Positives = 251/483 (51%), Gaps = 20/483 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
++ FR DLR+ DN AL A G ++A FI E EG G RWWL HSL+ L
Sbjct: 11 LLLFRHDLRLSDNLALCAAAETGRPIVAAFILDEESEGIRPLGGARRWWLHHSLAALAED 70
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L G LV +R + + ++L + T A +++N YDP + D K L +GI
Sbjct: 71 LGKHGLKLVLRRGSMARAAL-ALADETRACTVYWNRRYDPAGIAADTDLKAGLRDRGIEA 129
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSM-----PFDPDAPLLPPKRINSGDMS 181
+SF LL+EPW + G P+ F FW L P D L P + +GD
Sbjct: 130 QSFAGHLLHEPWRLKTGSGGPYRVFTPFWRALLDSVHPRPPADRPETLTPSRESVAGDRL 189
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
D + + + + L W PG + A K LT F++G Y R A TS
Sbjct: 190 ---EDWKLLPTKPDWATG--LRETWEPGEAGARKRLTAFLDGAGEGYKTRRDLMAEAGTS 244
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
+SPHL GE++ +++ + + D + F + IG RE+ ++ F++P
Sbjct: 245 GISPHLAHGEITPFQIWQTL--------ESDSSIADGDLQAFRREIGWREFCWHLLFHNP 296
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ F W D+ + W++G TGYP+VDA MR+LW TGW+H+R R+VV+SF
Sbjct: 297 KLATENFNRNFDAFPWRGDDTALRHWQRGETGYPVVDAAMRQLWQTGWMHNRARMVVASF 356
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L + WR G +FWDTL+DAD S+ WQ+++G+ D F RI NP +G KFDP
Sbjct: 357 LVKHLGIHWREGEAWFWDTLVDADPASNPANWQWVAGSGADAAPFFRIFNPVLQGQKFDP 416
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
G+YVRR++PEL LP + +H PW APE AG++LG YP P+V AA+ R +A
Sbjct: 417 VGDYVRRYVPELDALPDKHLHQPWKAPEEACGKAGVKLGDTYPRPLVDHRAARERALDAY 476
Query: 482 SEM 484
+
Sbjct: 477 KSV 479
>gi|357384343|ref|YP_004899067.1| deoxyribodipyrimidine photolyase [Pelagibacterium halotolerans B2]
gi|351592980|gb|AEQ51317.1| deoxyribodipyrimidine photolyase [Pelagibacterium halotolerans B2]
Length = 466
Score = 298 bits (762), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 175/475 (36%), Positives = 260/475 (54%), Gaps = 23/475 (4%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
++VW R DLR+ DNPALAA +R G V AV++ + E G ++ WL SL+ L
Sbjct: 4 STLVWLRNDLRIADNPALAAALRHEGPVHAVYVLETDRELRGLGG-AAKVWLHESLAALS 62
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+L G L + R +S + E+V+ T A ++++N YDP D K AL A G
Sbjct: 63 GALAERGVRL-SFREGESGKIIPEMVRETKAERVYWNRRYDPAGRTHDAAIKTALRADGA 121
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V SFNA LL EPWD+ QG P+ F FW P PD P RI + P
Sbjct: 122 EVASFNASLLVEPWDIATKQGTPYGVFTPFWTALREKPI-PD----PIGRIEKHEAISAP 176
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
+ L F + + +L R W+ G A + L+ F++ L +Y +R TS +S
Sbjct: 177 A--LDF-GKRPAWAGGILER-WAIGEDAAKRVLSDFLDDLLADYPNDRDLPRKDGTSRMS 232
Query: 245 PHLHFGEVSVRKVFHLVRI---KQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
PHL FGE+ R+++ VR + S A+ G K FL + RE+S ++ ++
Sbjct: 233 PHLRFGEIGPRQIWFAVRHLIDSKPSMASAGEK--------FLSEVAWREFSYHLLYHRD 284
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ W D KAW++G+TG P+VDAGMR+LW TGW+H+R+R++ +S
Sbjct: 285 DIARHSMQERFDEIEWRSDSKALKAWQKGQTGIPIVDAGMRQLWQTGWMHNRVRMLTASL 344
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L + WR G +FWDTL+DAD ++ WQ+++G+ D + RI NP +G KFDP
Sbjct: 345 LTKNLLIDWRKGENWFWDTLVDADPANNPASWQWVAGSGADAAPYFRIFNPVTQGEKFDP 404
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
+G+YVR+W+PEL+ +P +W+H PW A +L A ++ G+ YP PIV + A++ R
Sbjct: 405 HGDYVRQWVPELSDVPDKWVHKPWAADPEILNKASLKSGTAYPAPIVDLKASRER 459
>gi|378776172|ref|YP_005184602.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|364506979|gb|AEW50503.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 472
Score = 297 bits (761), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 168/471 (35%), Positives = 258/471 (54%), Gaps = 17/471 (3%)
Query: 7 SIVWFRRDLRVEDNPA-LAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFR+DLR+ DNPA + A VI ++I+ ++ G+ WWL +SL L
Sbjct: 5 ALVWFRQDLRLTDNPAFIEACSHHEIVIPLYIY---DDKCSVLGQAQAWWLHYSLIALGK 61
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SL G SLV ++ + +LE+V G +++N Y+P + RD + K AL + I
Sbjct: 62 SLNQQGLSLVLRKGSPQ-EIILELVAQYGVESVYWNRCYEPQVIARDKKIKLALVEREIK 120
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
V+SFN +LL+EPW + + G F F +W++C + P +P + KR +++
Sbjct: 121 VQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQILNIP-SPFILTKRPRGIEIAS--D 177
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
D ++ A + W PG A K L FI L Y ++R TS LSP
Sbjct: 178 DIGKWKLLPAINWAARFSEYWIPGEEGAQKKLDEFIVHHLSGYKRDRDFPAKNATSRLSP 237
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
HLHFGE+S + + + ++ + SV FL +G RE+S Y+ ++ P
Sbjct: 238 HLHFGEISPWVILRALELAKLE-----HTCDLASVEHFLSELGWREFSVYLLYHFPKLDC 292
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
F W DE W++G TGYP++DAGMRELWATG++H+R+R++V+SF K
Sbjct: 293 ENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMIVASFLTKD 352
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
L + WR G ++F DTL+DADL +++ WQ+++G D + RI NP + KFDP+G Y
Sbjct: 353 LLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPILQSQKFDPDGVY 412
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
+R+W+PELA+L ++ IH PW + A+ I LG YP PI+ A+ +
Sbjct: 413 IRQWIPELAQLNSQSIHQPWTDAD----ASSIFLGKKYPKPIIDHQEARTK 459
>gi|285017930|ref|YP_003375641.1| deoxyribodipyrimidine photo-lyase; photolyase [Xanthomonas
albilineans GPE PC73]
gi|283473148|emb|CBA15654.1| putative deoxyribodipyrimidine photo-lyase; photolyase protein
[Xanthomonas albilineans GPE PC73]
Length = 503
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 167/457 (36%), Positives = 264/457 (57%), Gaps = 23/457 (5%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAV-IAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFRRDLR+ D PAL A + AG + V++ +PE+EG + G S WL+ SL+ LD+
Sbjct: 34 AIVWFRRDLRLHDQPALHAALAAGHTPVPVYLHSPEDEGDWAAGAASCAWLQRSLAALDA 93
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
LR+ G+ L+ +R + +L +V+ GA +++N Y+P + RD R K L A G+
Sbjct: 94 QLRACGSRLILRRGP-AEHALRQVIAECGAVAVYWNRRYEPATQPRDARLKRELRALGLE 152
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS---MPFDPDAPLL---PPKRINSGD 179
V S N LL+EPW + QG P+ F FW LS +P AP PP+ ++S
Sbjct: 153 VHSHNGALLFEPWQLATQQGGPYKVFTPFWRSALSRWQVPAPMHAPATLPPPPQALHSLA 212
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+ + L+ + ++G W PG A +AL F++G L +Y R + D
Sbjct: 213 LD---ALGLMSAHDWDRG----FWECWQPGEQGAHEALDVFVDGALRDYVAGRDRPDQVG 265
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSPHLHFGE++ ++ ++ A +++ +++ +G R+++ ++ +
Sbjct: 266 TSRLSPHLHFGEIAPWRIVSALQ-------QHRRAATGTAIDGYIRQLGWRDFAYHLLHH 318
Query: 300 HPYSHERPLLGHLKFFSWVVDEGY-FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
P++ ER L + F W +AW++GR+G P+VDAG+RELW TGW+H+R+R++V
Sbjct: 319 FPHTPERNLNPRFERFRWATPGPVQLQAWQRGRSGVPIVDAGLRELWRTGWMHNRVRMIV 378
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+S+ K L++ W G ++FWDTL+DADL ++ LGWQ+++GT D + R+ NP + K
Sbjct: 379 ASYLCKHLRVHWSEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAQK 438
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAA 455
FDP G Y+ RW+PELA LP PW P+ + + A
Sbjct: 439 FDPQGAYIARWVPELAALPVADRFAPWLVPQRLARVA 475
>gi|52840467|ref|YP_094266.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52627578|gb|AAU26319.1| deoxyribodipyrimidine photolyase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 471
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 168/471 (35%), Positives = 258/471 (54%), Gaps = 17/471 (3%)
Query: 7 SIVWFRRDLRVEDNPA-LAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFR+DLR+ DNPA + A VI ++I+ ++ G+ WWL +SL L
Sbjct: 4 ALVWFRQDLRLTDNPAFIEACSHHEIVIPLYIY---DDKCSVLGQAQAWWLHYSLIALGK 60
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SL G SLV ++ + +LE+V G +++N Y+P + RD + K AL + I
Sbjct: 61 SLNQQGLSLVLRKGSPQ-EIILELVAQYGVESVYWNRCYEPQVIARDKKIKLALVEREIK 119
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
V+SFN +LL+EPW + + G F F +W++C + P +P + KR +++
Sbjct: 120 VQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQILNIP-SPFILTKRPRGIEIAS--D 176
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
D ++ A + W PG A K L FI L Y ++R TS LSP
Sbjct: 177 DIGKWKLLPAINWAARFSEYWIPGEEGAQKKLDEFIVHHLSGYKRDRDFPAKNATSRLSP 236
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
HLHFGE+S + + + ++ + SV FL +G RE+S Y+ ++ P
Sbjct: 237 HLHFGEISPWVILRALELAKLE-----HTCDLASVEHFLSELGWREFSVYLLYHFPKLDC 291
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
F W DE W++G TGYP++DAGMRELWATG++H+R+R++V+SF K
Sbjct: 292 ENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMIVASFLTKD 351
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
L + WR G ++F DTL+DADL +++ WQ+++G D + RI NP + KFDP+G Y
Sbjct: 352 LLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPILQSQKFDPDGVY 411
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
+R+W+PELA+L ++ IH PW + A+ I LG YP PI+ A+ +
Sbjct: 412 IRQWIPELAQLNSQSIHQPWTDAD----ASSIFLGKKYPKPIIDHQEARTK 458
>gi|416907322|ref|ZP_11931049.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. TJI49]
gi|325528961|gb|EGD05987.1| deoxyribodipyrimidine photo-lyase [Burkholderia sp. TJI49]
Length = 452
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 170/441 (38%), Positives = 235/441 (53%), Gaps = 18/441 (4%)
Query: 49 GRVSRWWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLS 108
G +WWL SL LD SL +LG SL+ R + ++ + T A +F+N Y
Sbjct: 2 GGAQKWWLHESLKKLDDSLSALGGSLLVLRGNEH-EAIRSLAVETRAAMVFWNRRYSKAQ 60
Query: 109 LVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAP 168
D K+ L +GI V +FN LL EPW V +G PF F+A+W F P P
Sbjct: 61 TEMDASIKKDLIGRGIDVSTFNGHLLREPWTVATREGLPFQVFSAYWRAARRDNFFPPCP 120
Query: 169 LLPPKRINSGDMSRCPS------DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFIN 222
L P RI +SR S L + + + L A W G A L FI
Sbjct: 121 LPAPARITFFPVSRNVSAHVSTLSELALQPSTPDWAEGLRA-TWRCGEEAAGHQLEAFIE 179
Query: 223 GPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHL-------VRIKQVSWANEGNKA 275
+Y+ R + TS LSP+L FG +S R+V++ +R ++V + A
Sbjct: 180 NSFSDYAGARDFPATRATSRLSPYLRFGNISARQVWYATLSAVDAMRSRRVV---RIDDA 236
Query: 276 GDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYP 335
+ES+N F +G RE+S Y+ ++ H+ W D +AW++G+TGYP
Sbjct: 237 KNESLNKFFSELGWREFSYYLLYHCEPLHQFNFRRQFDAMPWRTDAKALRAWQRGKTGYP 296
Query: 336 LVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQY 395
LVDAGMRELW TGW+H+R+R+V +SF K L + WR G +FWDTL+DAD S+ GWQ+
Sbjct: 297 LVDAGMRELWHTGWMHNRVRMVTASFLTKHLLIDWREGEAWFWDTLVDADEASNPAGWQW 356
Query: 396 ISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAA 455
+SG+ D + RI NP +G KFD +GEY RRW+PEL+ LP E +H PW A L+ A
Sbjct: 357 VSGSGADAAPYFRIFNPVLQGEKFDSSGEYTRRWVPELSALPAETLHSPWTASAEALREA 416
Query: 456 GIELGSNYPFPIVRIDAAKCR 476
I LG++YPFPIV A+ R
Sbjct: 417 SIALGASYPFPIVDHQVARAR 437
>gi|304391382|ref|ZP_07373324.1| cryptochrome-2 [Ahrensia sp. R2A130]
gi|303295611|gb|EFL89969.1| cryptochrome-2 [Ahrensia sp. R2A130]
Length = 480
Score = 296 bits (759), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 173/486 (35%), Positives = 258/486 (53%), Gaps = 14/486 (2%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHS 59
MS I+WFR+DLR++DNPAL A +G V+AVF++ EG G RWWL HS
Sbjct: 1 MSKTSPIIMWFRQDLRLDDNPALIAAAESGKPVVAVFVFDEASEGIRKLGGAMRWWLHHS 60
Query: 60 LSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
L L L +LG L+ +R + ++ K GA + +N Y D K
Sbjct: 61 LKSLTKDLGALGVDLILRRGP-GAEVIFDLAKEVGAENVVWNRRYGDAEQTVDATIKGDF 119
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRIN-SG 178
+ +S+ +++EP +V G P+ + FW+K M DA P + G
Sbjct: 120 EGE---AKSYGGIIMHEPINVRTGTGNPYKVYTPFWKKFCEMGLPRDAHPAPQEIAGFGG 176
Query: 179 DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
D++ D S+ L + W+PG S A F++ L Y R
Sbjct: 177 DVASDNLDEWDLLPTKPDWSDGWL-KVWTPGESAAQTRARAFMSDDLDVYDSARDLPGDD 235
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LSPHL +GE+S +++ + + ++S AG ++ ++K + RE+S ++
Sbjct: 236 RTSRLSPHLRWGEISPYRLWQMAQDGRLS-------AGSKARETWVKELVWREFSYHLLQ 288
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
P F W D+ +AW++G+TGYP+VDAGMR+LW TGW+H+R+R++V
Sbjct: 289 EWPDLANENFNTKYDSFPWRSDDEQLRAWQKGQTGYPIVDAGMRQLWQTGWMHNRVRMIV 348
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
SF VK L L WR G +FWDTL+D D S++ WQ+++GT D F RI NP + K
Sbjct: 349 GSFLVKHLLLDWRHGEDWFWDTLVDGDPASNSAQWQWVAGTGADAAPFFRIFNPIMQAEK 408
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FD +G Y+++W+PELA+LP +++ PW AP +VL+ AG++LG YP PIV A+ R
Sbjct: 409 FDKDGVYIKKWVPELAKLPAKYLPSPWEAPLTVLRDAGVKLGDTYPRPIVDHKEARERAL 468
Query: 479 EALSEM 484
AL EM
Sbjct: 469 AALQEM 474
>gi|402487390|ref|ZP_10834210.1| deoxyribodipyrimidine photo-lyase [Rhizobium sp. CCGE 510]
gi|401813716|gb|EJT06058.1| deoxyribodipyrimidine photo-lyase [Rhizobium sp. CCGE 510]
Length = 483
Score = 296 bits (758), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 180/482 (37%), Positives = 254/482 (52%), Gaps = 17/482 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I+WFR+DLR++DN A+ A R+G +I +++ PE G G WWL HSL LD S
Sbjct: 10 ILWFRKDLRLDDNQAVDAAHRSGRPIIPLYLREPEAAGTGALGAAQAWWLHHSLKALDES 69
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
LR LV S ++ L +++ +GA +F+N YDP + D R K L Q I
Sbjct: 70 LRKRQGRLVLS-SGGALEVLCALIRESGAEAVFWNRRYDPSGISIDSRIKHELEQQAIEA 128
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM----SR 182
RSF LL+EP + G P+ + FW + L +P P+ P ++ +
Sbjct: 129 RSFGGQLLHEPSLLMTGSGTPYRVYTPFW-RALEGAGEPGRPVEAPAKLLLASQLPKSEK 187
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
S L+ G A L W+PG A + L F+ L Y +NR TS
Sbjct: 188 LESWNLLPTKPDWAGDFADL---WTPGEEGAQEKLGVFVEDALDGYKQNRDYPAKPATSM 244
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHL GE+S +++ R ++ + F K I RE+S ++ F+ P
Sbjct: 245 LSPHLALGEISPARIWDATR-------GLSSRVPATDIVHFRKEIAWREFSYHLLFHFPR 297
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
F W D FKAW +G TGYP+VDAGMR+LW GW+H+R+R++V SF
Sbjct: 298 LASANWNDRFDGFEWRNDGDDFKAWCRGMTGYPIVDAGMRQLWRHGWMHNRVRMIVGSFL 357
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
+K L + WR G +F DTL+DAD ++A WQ+++G+ D F RI NP +G FDP+
Sbjct: 358 IKDLMIDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQGETFDPD 417
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
G+YVR +PEL RL ++IH P+ AP+SVL AGI LG YP PIV +A+ R A +
Sbjct: 418 GDYVRAHVPELQRLGAKYIHRPFEAPKSVLDEAGITLGQTYPKPIVDHKSARNRALAAYN 477
Query: 483 EM 484
M
Sbjct: 478 AM 479
>gi|430003702|emb|CCF19491.1| Deoxyribodipyrimidine photo-lyase [Rhizobium sp.]
Length = 476
Score = 296 bits (757), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 182/475 (38%), Positives = 261/475 (54%), Gaps = 22/475 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
IVWFRRDLR+ DN AL+A V GA VIA+FI G G WWL HSL L +
Sbjct: 9 IVWFRRDLRLADNAALSAAVETGAPVIALFIREGSAGGGMPFGAAQAWWLHHSLLALRQA 68
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L G L+ + ++ + L++V + TGA Q++ N Y+ RD L A+GIAV
Sbjct: 69 LHDRGGDLLFF-TGEAATVLVQVAQQTGANQIYLNRSYERDDQDRD--IARRLKAEGIAV 125
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
+F+ LL++P + G+PF F FW K L +P PL P + G S PS+
Sbjct: 126 HAFHGQLLHDPSHIRTGGGKPFRVFTPFW-KALQALGEPREPLAAPDAMR-GASSTPPSE 183
Query: 187 TLVFED----ESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
L ED ++ A W+PG + A L F+ L EY R TS
Sbjct: 184 QL--EDWGLLPTKPDWAAGFGETWTPGEAGARFRLEDFVEHGLREYKSVRDFPARDLTSH 241
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDES-VNLFLKSIGLREYSRYMSFNHP 301
LSPHL GEV+ + +H A G GD + + F + + R+++ + P
Sbjct: 242 LSPHLAHGEVTPAQAWH---------AASGLDNGDPAQITHFRRELAWRDFNYSLLIEFP 292
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
F+W D ++AWR+G TGYP+VDAGMR+LW G++H+R+R++ +SF
Sbjct: 293 RLATDNWNTAFDGFAWSFDGALYRAWRKGLTGYPIVDAGMRQLWREGYMHNRVRMITASF 352
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
+K L + WR G ++F +TLLDAD ++A WQ+++G+ D F RI NP +G KFDP
Sbjct: 353 LIKDLTIDWRKGEEWFRETLLDADPANNAASWQWVAGSGADASPFFRIFNPTLQGEKFDP 412
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
+G+YVRR++PEL+ L ++IH P+ AP+ +LQ AGI LG +YP PIV +A+ R
Sbjct: 413 DGDYVRRYVPELSHLDKKYIHRPFEAPDHILQKAGIRLGESYPRPIVDHGSARER 467
>gi|341607429|gb|AEK83817.1| At4G08920-like protein [Capsella rubella]
gi|341607431|gb|AEK83818.1| At4G08920-like protein [Capsella rubella]
gi|341607433|gb|AEK83819.1| At4G08920-like protein [Capsella rubella]
gi|341607435|gb|AEK83820.1| At4G08920-like protein [Capsella rubella]
gi|341607437|gb|AEK83821.1| At4G08920-like protein [Capsella rubella]
gi|341607439|gb|AEK83822.1| At4G08920-like protein [Capsella rubella]
gi|341607441|gb|AEK83823.1| At4G08920-like protein [Capsella rubella]
gi|341607443|gb|AEK83824.1| At4G08920-like protein [Capsella rubella]
gi|341607445|gb|AEK83825.1| At4G08920-like protein [Capsella rubella]
gi|341607447|gb|AEK83826.1| At4G08920-like protein [Capsella rubella]
gi|341607449|gb|AEK83827.1| At4G08920-like protein [Capsella rubella]
gi|341607451|gb|AEK83828.1| At4G08920-like protein [Capsella rubella]
gi|341607453|gb|AEK83829.1| At4G08920-like protein [Capsella rubella]
gi|341607455|gb|AEK83830.1| At4G08920-like protein [Capsella rubella]
gi|341607457|gb|AEK83831.1| At4G08920-like protein [Capsella rubella]
gi|341607459|gb|AEK83832.1| At4G08920-like protein [Capsella rubella]
gi|341607461|gb|AEK83833.1| At4G08920-like protein [Capsella rubella]
gi|341607463|gb|AEK83834.1| At4G08920-like protein [Capsella rubella]
gi|341607465|gb|AEK83835.1| At4G08920-like protein [Capsella rubella]
gi|341607477|gb|AEK83841.1| At4G08920-like protein [Capsella rubella]
gi|341607479|gb|AEK83842.1| At4G08920-like protein [Capsella rubella]
gi|341607481|gb|AEK83843.1| At4G08920-like protein [Capsella rubella]
gi|341607483|gb|AEK83844.1| At4G08920-like protein [Capsella rubella]
gi|341607485|gb|AEK83845.1| At4G08920-like protein [Capsella rubella]
gi|341607487|gb|AEK83846.1| At4G08920-like protein [Capsella rubella]
gi|341607489|gb|AEK83847.1| At4G08920-like protein [Capsella rubella]
gi|341607491|gb|AEK83848.1| At4G08920-like protein [Capsella rubella]
gi|341607493|gb|AEK83849.1| At4G08920-like protein [Capsella rubella]
gi|341607495|gb|AEK83850.1| At4G08920-like protein [Capsella rubella]
gi|341607497|gb|AEK83851.1| At4G08920-like protein [Capsella rubella]
gi|341607499|gb|AEK83852.1| At4G08920-like protein [Capsella rubella]
gi|341607501|gb|AEK83853.1| At4G08920-like protein [Capsella rubella]
gi|341607507|gb|AEK83856.1| At4G08920-like protein [Capsella rubella]
gi|341607509|gb|AEK83857.1| At4G08920-like protein [Capsella rubella]
gi|341607511|gb|AEK83858.1| At4G08920-like protein [Capsella rubella]
gi|341607515|gb|AEK83860.1| At4G08920-like protein [Capsella rubella]
gi|341607519|gb|AEK83862.1| At4G08920-like protein [Capsella rubella]
gi|341607521|gb|AEK83863.1| At4G08920-like protein [Capsella rubella]
gi|341607523|gb|AEK83864.1| At4G08920-like protein [Capsella rubella]
gi|341607525|gb|AEK83865.1| At4G08920-like protein [Capsella rubella]
gi|341607527|gb|AEK83866.1| At4G08920-like protein [Capsella rubella]
gi|341607529|gb|AEK83867.1| At4G08920-like protein [Capsella rubella]
gi|341607531|gb|AEK83868.1| At4G08920-like protein [Capsella rubella]
gi|341607533|gb|AEK83869.1| At4G08920-like protein [Capsella rubella]
gi|341607535|gb|AEK83870.1| At4G08920-like protein [Capsella rubella]
gi|341607537|gb|AEK83871.1| At4G08920-like protein [Capsella rubella]
gi|341607539|gb|AEK83872.1| At4G08920-like protein [Capsella rubella]
gi|341607541|gb|AEK83873.1| At4G08920-like protein [Capsella rubella]
gi|341607543|gb|AEK83874.1| At4G08920-like protein [Capsella rubella]
gi|341607545|gb|AEK83875.1| At4G08920-like protein [Capsella rubella]
gi|341607547|gb|AEK83876.1| At4G08920-like protein [Capsella rubella]
gi|341607549|gb|AEK83877.1| At4G08920-like protein [Capsella rubella]
gi|341607551|gb|AEK83878.1| At4G08920-like protein [Capsella rubella]
gi|341607553|gb|AEK83879.1| At4G08920-like protein [Capsella rubella]
gi|341607555|gb|AEK83880.1| At4G08920-like protein [Capsella rubella]
gi|341607557|gb|AEK83881.1| At4G08920-like protein [Capsella rubella]
gi|341607559|gb|AEK83882.1| At4G08920-like protein [Capsella rubella]
gi|341607561|gb|AEK83883.1| At4G08920-like protein [Capsella rubella]
gi|341607563|gb|AEK83884.1| At4G08920-like protein [Capsella rubella]
gi|341607565|gb|AEK83885.1| At4G08920-like protein [Capsella rubella]
gi|341607567|gb|AEK83886.1| At4G08920-like protein [Capsella rubella]
gi|341607569|gb|AEK83887.1| At4G08920-like protein [Capsella rubella]
gi|341607571|gb|AEK83888.1| At4G08920-like protein [Capsella rubella]
gi|341607573|gb|AEK83889.1| At4G08920-like protein [Capsella rubella]
gi|341607575|gb|AEK83890.1| At4G08920-like protein [Capsella rubella]
gi|341607577|gb|AEK83891.1| At4G08920-like protein [Capsella rubella]
gi|341607579|gb|AEK83892.1| At4G08920-like protein [Capsella rubella]
gi|341607581|gb|AEK83893.1| At4G08920-like protein [Capsella rubella]
gi|341607583|gb|AEK83894.1| At4G08920-like protein [Capsella rubella]
gi|341607585|gb|AEK83895.1| At4G08920-like protein [Capsella rubella]
gi|341607587|gb|AEK83896.1| At4G08920-like protein [Capsella rubella]
gi|341607589|gb|AEK83897.1| At4G08920-like protein [Capsella rubella]
gi|341607591|gb|AEK83898.1| At4G08920-like protein [Capsella rubella]
gi|341607593|gb|AEK83899.1| At4G08920-like protein [Capsella rubella]
gi|341607595|gb|AEK83900.1| At4G08920-like protein [Capsella rubella]
gi|341607597|gb|AEK83901.1| At4G08920-like protein [Capsella rubella]
gi|341607599|gb|AEK83902.1| At4G08920-like protein [Capsella rubella]
gi|341607601|gb|AEK83903.1| At4G08920-like protein [Capsella rubella]
gi|341607603|gb|AEK83904.1| At4G08920-like protein [Capsella rubella]
gi|341607605|gb|AEK83905.1| At4G08920-like protein [Capsella rubella]
gi|341607607|gb|AEK83906.1| At4G08920-like protein [Capsella rubella]
gi|341607609|gb|AEK83907.1| At4G08920-like protein [Capsella rubella]
gi|341607611|gb|AEK83908.1| At4G08920-like protein [Capsella rubella]
gi|341607613|gb|AEK83909.1| At4G08920-like protein [Capsella rubella]
gi|341607615|gb|AEK83910.1| At4G08920-like protein [Capsella rubella]
gi|341607617|gb|AEK83911.1| At4G08920-like protein [Capsella rubella]
gi|341607619|gb|AEK83912.1| At4G08920-like protein [Capsella rubella]
gi|341607621|gb|AEK83913.1| At4G08920-like protein [Capsella rubella]
gi|341607623|gb|AEK83914.1| At4G08920-like protein [Capsella rubella]
gi|341607625|gb|AEK83915.1| At4G08920-like protein [Capsella rubella]
Length = 163
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 148/161 (91%), Positives = 153/161 (95%)
Query: 317 WVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKY 376
W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKY
Sbjct: 2 WAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKY 61
Query: 377 FWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARL 436
FWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVRRWLPEL+RL
Sbjct: 62 FWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRL 121
Query: 437 PTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
PT+WIHHPWNAPESVLQAAGIELGSNYP PIV +D AK RL
Sbjct: 122 PTDWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARL 162
>gi|397662777|ref|YP_006504315.1| deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
gi|395126188|emb|CCD04368.1| Deoxyribodipyrimidine photo-lyase [Legionella pneumophila subsp.
pneumophila]
Length = 471
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 168/479 (35%), Positives = 259/479 (54%), Gaps = 33/479 (6%)
Query: 7 SIVWFRRDLRVEDNPA-LAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+++WFR+DLR+ DNPA + A VI ++I+ ++ G+ WWL HSL L
Sbjct: 4 ALMWFRQDLRLTDNPAFIEACSHHDIVIPLYIY---DDKCSVLGQAQAWWLHHSLIALGK 60
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SL G +LV ++ + ++E+V +++N Y+P + RD + K AL + I
Sbjct: 61 SLNQKGLNLVLRKGSPQ-EIIVELVAQHNVESVYWNRSYEPQVIARDKKIKLALGEREIK 119
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKR-----INSGDM 180
V+SFN +LL+EPW + + G F F +W++C + P +P + KR I S D+
Sbjct: 120 VQSFNGNLLHEPWTIKNKNGDFFKVFTPYWKQCRQILNIP-SPFMLTKRPRGIEITSDDL 178
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
+ + A + W+PG A K L F+ L Y ++R T
Sbjct: 179 GKWKLLPAI-------NWAARFSEYWTPGEEGAQKKLNEFVVHHLSGYKRDRDFPAKNAT 231
Query: 241 SFLSPHLHFGEVS---VRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
S LSPHLHFGE+S + + L +++Q SV FL +G RE+S Y+
Sbjct: 232 SRLSPHLHFGEISPWVILRALELAKLEQT--------CDLASVEHFLSELGWREFSVYLL 283
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
++ P F W DE W++G TGYP++DAGMRELWATG++H+R+R++
Sbjct: 284 YHFPKLDCENFRKEFDAFPWQNDEQLLTCWQKGMTGYPIIDAGMRELWATGYMHNRVRMI 343
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V+SF K L + WR G ++F DTL+DADL +++ WQ+++G D + RI NP +
Sbjct: 344 VASFLTKDLLIDWRSGAQWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQ 403
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFDP+G Y+R+W+PELA+L ++ IH PW + A+ I LG YP PI+ A+ +
Sbjct: 404 KFDPDGVYIRQWIPELAQLNSQSIHQPWTDAD----ASSIFLGKKYPKPIIDHQEARTK 458
>gi|209884870|ref|YP_002288727.1| deoxyribodipyrimidine photo-lyase [Oligotropha carboxidovorans OM5]
gi|337741487|ref|YP_004633215.1| deoxyribodipyrimidine photolyase PhrB [Oligotropha carboxidovorans
OM5]
gi|386030503|ref|YP_005951278.1| deoxyribodipyrimidine photolyase PhrB [Oligotropha carboxidovorans
OM4]
gi|209873066|gb|ACI92862.1| deoxyribodipyrimidine photo-lyase [Oligotropha carboxidovorans OM5]
gi|336095571|gb|AEI03397.1| deoxyribodipyrimidine photolyase PhrB [Oligotropha carboxidovorans
OM4]
gi|336099151|gb|AEI06974.1| deoxyribodipyrimidine photolyase PhrB [Oligotropha carboxidovorans
OM5]
Length = 487
Score = 295 bits (754), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 188/497 (37%), Positives = 257/497 (51%), Gaps = 29/497 (5%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIW--APEEEGPYYPGRVSRWWLK 57
M+ IVWFR DLR+ D+ ALAA GA +I +FI A + G ++WWL
Sbjct: 5 MASASSVIVWFRNDLRLSDHAALAAAAGTGAPLICLFILDEAAAQSARRPLGAAAKWWLA 64
Query: 58 HSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKE 117
+SL LD LR G L+ +R D+ + L+++ + A +F+ P +
Sbjct: 65 NSLRTLDRELRKRGQRLILRRG-DTATILVQIAQEAKAKAVFWLDSEIPAEAACARQVIT 123
Query: 118 ALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS 177
AL G+ +DLL P + + +G F FW++ ++ DP PL
Sbjct: 124 ALHEIGVETHISRSDLLASPSMIRNKEGHGLRVFTPFWKRVRALG-DPPPPL-------- 174
Query: 178 GDMSRCPSDTLVFEDESEKG----------SNALLARAWSPGWSNADKALTTFINGPLIE 227
M + P E ES + + L AR W PG + A K L F++ +
Sbjct: 175 PAMKKLPPSVASVESESIEDWQLEPLHPDWAGGLRAR-WKPGEAGARKKLDAFLDDAIDG 233
Query: 228 YSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSI 287
Y+ R TS LS HL FGE+S R+VFH R A N A V FL +
Sbjct: 234 YASGRDDLARDQTSHLSAHLRFGEISPRQVFHATRF-----AAAHNPALSHDVEKFLSEL 288
Query: 288 GLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWAT 347
G RE+ R++ F+ P H + L F W D AW+QGRTGYP+VDAGMRELW T
Sbjct: 289 GWREFCRHLLFDQPDLHRQDLQPSFDNFPWRTDRAALSAWQQGRTGYPIVDAGMRELWHT 348
Query: 348 GWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFD 407
G +H+R+R+V +SF VK L + WR G ++FWDTL+DAD S+ WQ+++G D +
Sbjct: 349 GTMHNRVRMVAASFLVKHLLIDWREGERWFWDTLVDADPGSNPGNWQWVAGCGADAAPYF 408
Query: 408 RIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPI 467
RI NP +G KFDP+G YV +W+PELA+LP + IH PW A L AAGI LG YP PI
Sbjct: 409 RIFNPVLQGEKFDPDGAYVMKWVPELAKLPPKLIHQPWEATPMELAAAGITLGKTYPAPI 468
Query: 468 VRIDAAKCRLDEALSEM 484
V AA+ R A +M
Sbjct: 469 VDHKAARERALAAYRKM 485
>gi|77963990|gb|ABB13336.1| cryptochrome 2 [Hordeum vulgare subsp. vulgare]
Length = 350
Score = 295 bits (754), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 129/196 (65%), Positives = 156/196 (79%)
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+HER LLG+LK + W DE FK+WRQG TGYPLVDAGMRELWATGW H+RIRV+VSSF
Sbjct: 1 THERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIVSSFA 60
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L +PW WGMKYFWD LLDAD+ESD LGWQYISG +PDG R+DNP+ +G K+DP+
Sbjct: 61 VKFLLIPWTWGMKYFWDVLLDADIESDILGWQYISGCLPDGHELGRLDNPEVQGQKYDPD 120
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
GEYVR W+PELAR+P EWIHHPW+AP S+L+ AG+ELG NYP PIV + A+ LD+A+S
Sbjct: 121 GEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHTARECLDDAIS 180
Query: 483 EMWQQEAASRAAIENG 498
MWQ + A + A +G
Sbjct: 181 TMWQLDTAEKLAELDG 196
>gi|420239237|ref|ZP_14743574.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF080]
gi|398081725|gb|EJL72497.1| deoxyribodipyrimidine photolyase [Rhizobium sp. CF080]
Length = 477
Score = 294 bits (753), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 181/480 (37%), Positives = 260/480 (54%), Gaps = 21/480 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+I+WFR+DLR++DNPAL A + AG VI V+I P G WWL HSL+ L +
Sbjct: 9 AILWFRKDLRLDDNPALHAAIEAGGPVIPVYIREPAHLNIGPLGAAQAWWLHHSLAALKA 68
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SL+SL L+ S + L ++V+ T A +F N Y+ + D L IA
Sbjct: 69 SLKSLSGDLIFI-SGKAEDVLTDLVRKTNAKTVFVNRAYE--RTLFDRGIAIELKKHDIA 125
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGD---MSR 182
+R+F+ LL+EP + G F F FW L +P P P +I S + +S
Sbjct: 126 IRAFHGQLLHEPKSIRTGAGNAFKVFTPFW-NALQKVGEPQEPTDAPTKIPSPEHFPLSE 184
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+ + + ++ R W+PG + A + L ++ L +Y + R TS
Sbjct: 185 NLDHWALLPKKPDWAAD--FGRMWTPGEAGAQEKLADVVDRDLQDYKRGRDLPSVHATSL 242
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHL GEVS +++H VR KA E V F + + R++ + P
Sbjct: 243 LSPHLAHGEVSPARIWHAVR-------GLPPKAS-EDVAHFRRELAWRDFCYNLLAEFPK 294
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
H+R F W D F AW G TGYP+VDAGMR+LW TG++H+R+R++ +SF
Sbjct: 295 LHDRNWDDRFDGFKWEYDAKEFSAWTMGLTGYPIVDAGMRQLWRTGFMHNRVRMITASFL 354
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
+K L + WR G ++F DTL+DAD +++ WQ+++G+ D F RI NP +G KFDP+
Sbjct: 355 IKDLMIDWRRGERWFRDTLVDADPANNSANWQWVAGSGADASPFFRIFNPVLQGEKFDPD 414
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
G+YVR +PELARL +++H P+ APE VL+ AGIELG YP PIV D A R D AL+
Sbjct: 415 GDYVREHVPELARLDRKYVHKPFEAPEHVLEKAGIELGKTYPKPIV--DHAFAR-DRALA 471
>gi|77963986|gb|ABB13334.1| cryptochrome 2 [Hordeum vulgare subsp. vulgare]
gi|77963988|gb|ABB13335.1| cryptochrome 2 [Hordeum vulgare subsp. vulgare]
Length = 350
Score = 294 bits (753), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 129/196 (65%), Positives = 156/196 (79%)
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+HER LLG+LK + W DE FK+WRQG TGYPLVDAGMRELWATGW H+RIRV+VSSF
Sbjct: 1 THERSLLGNLKHYPWRADEDRFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIVSSFA 60
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L +PW WGMKYFWD LLDAD+ESD LGWQYISG +PDG R+DNP+ +G K+DP+
Sbjct: 61 VKFLLIPWTWGMKYFWDVLLDADIESDILGWQYISGCLPDGHELGRLDNPEVQGQKYDPD 120
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
GEYVR W+PELAR+P EWIHHPW+AP S+L+ AG+ELG NYP PIV + A+ LD+A+S
Sbjct: 121 GEYVRTWIPELARMPGEWIHHPWDAPSSILEVAGVELGFNYPMPIVELHMARECLDDAIS 180
Query: 483 EMWQQEAASRAAIENG 498
MWQ + A + A +G
Sbjct: 181 TMWQLDTAEKLAELDG 196
>gi|383317844|ref|YP_005378686.1| deoxyribodipyrimidine photolyase [Frateuria aurantia DSM 6220]
gi|379044948|gb|AFC87004.1| deoxyribodipyrimidine photolyase [Frateuria aurantia DSM 6220]
Length = 498
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 174/490 (35%), Positives = 250/490 (51%), Gaps = 27/490 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFR DLR+ D+PAL R+G +I V++ P +EG G + WWL +L LD
Sbjct: 17 VVWFRDDLRLADHPALEHARRSGLPLICVYVLQPAQEGMRGLGGAASWWLHGALQALDQD 76
Query: 67 LRSLGTSLV--TKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
LR+ G L+ + D + L V A G L +N Y D K+ A+G
Sbjct: 77 LRACGGELLLLAGSAPDVLGQLASQVDAAG---LVWNRRYGQAERAMDAGIKQRFRAEGR 133
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
S +L+EPW + P+ F+A+W CL A P D+
Sbjct: 134 LASSHAGSVLHEPWTLRPDGAPPYQVFSAYWRACLR------AGEPPLPLPAPADLRFAS 187
Query: 185 SDTLVFEDESEKGSNALLARA----------WSPGWSNADKALTTFINGPLIEYSKNRRK 234
L LL R W PG + A + L F+ L Y++ R
Sbjct: 188 LQGLSLASRRSLAELDLLPRTPDWAGGLRAHWVPGEAAAWRQLQQFVEEGLCGYAEGRDF 247
Query: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSR 294
A S LSP+L FG +S R+++H + + ++ + ++ FL +G R++ +
Sbjct: 248 PGQAHCSRLSPYLRFGHLSPRQIWHAMSAAALQ-----HRLPGQDLDKFLAELGWRDFCQ 302
Query: 295 YMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
Y+ ++H RPL + W D KAW++G+TGYPLVDAGMRELW TGW+H+R+
Sbjct: 303 YLHYHHAALESRPLQPSFEAMPWRHDPAALKAWQRGQTGYPLVDAGMRELWTTGWMHNRV 362
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R+VV+SF VK L L WR G +FWDTL+DAD S+ WQ+++G D + RI NP
Sbjct: 363 RMVVASFLVKHLLLDWRDGEAWFWDTLVDADPASNPASWQWVAGCGMDAAPYFRIFNPIL 422
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
+G KFD G YVR WLPELA+LP + PW A + +AAG+ LG +YP P+V A+
Sbjct: 423 QGQKFDAQGAYVRHWLPELAKLPDRALQQPWTASSAQTRAAGVRLGIDYPEPVVEHAMAR 482
Query: 475 CRLDEALSEM 484
R +A ++M
Sbjct: 483 ERALQAYAQM 492
>gi|316933592|ref|YP_004108574.1| DNA photolyase FAD-binding protein [Rhodopseudomonas palustris
DX-1]
gi|315601306|gb|ADU43841.1| DNA photolyase FAD-binding protein [Rhodopseudomonas palustris
DX-1]
Length = 483
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 184/484 (38%), Positives = 257/484 (53%), Gaps = 15/484 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
IVWFR DLR+ D+PAL A ++GA V+ V++ + G +RWWL SL L++
Sbjct: 11 IVWFRDDLRLADHPALHAAAQSGAPVLCVYVLDEVSDEVRALGGAARWWLAQSLRSLEAE 70
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
LR+ G L+ +R + + L E+ + + A + +N + +ALT GIA
Sbjct: 71 LRAAGALLILRRGP-AAAVLAELAQQSDAAAVHWNEIEIAPHRAVADALADALTMAGIAY 129
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
+ D L P + G+ F FW + LS+ DP PL P + P
Sbjct: 130 HRHSGDTLVAPSAIRSKDGRGMRVFTPFWRRVLSL-GDPPQPLPRPAALRPAPA--LPGA 186
Query: 187 TLV---FEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
L E + + L A W PG + A L F+ L Y++ R D TS L
Sbjct: 187 QLSDWQLEPTAPDWAGGLRA-TWRPGEAAAKTRLADFL-ARLPGYAEGRDYPDRHVTSGL 244
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SP+L FGE+S R+V++ R A A ++ FL +G RE+ R++ +HP
Sbjct: 245 SPYLRFGEISPRQVWYAARF-----AAAERPAIAPDIDKFLSELGWREFCRHLLADHPDL 299
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
R L F W D+G AW++GRTGYP+VDAGM ELW +G +H+R+R+VV SF V
Sbjct: 300 AARNLQPAFDAFPWQSDDGALTAWQRGRTGYPIVDAGMHELWHSGVMHNRVRMVVGSFLV 359
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WR G ++FWDTL+DAD S+ WQ+++G D + R+ NP + KFD +G
Sbjct: 360 KHLLIDWRLGEQWFWDTLVDADPGSNPGNWQWVAGCGADAAPYFRVFNPVLQSEKFDADG 419
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSE 483
Y+RRWLPELA LP IH PW A L AAG+ELG NYP PIV AA+ R A SE
Sbjct: 420 AYIRRWLPELAGLPNNLIHQPWTATPLELAAAGVELGGNYPRPIVDHKAARQRALSAYSE 479
Query: 484 MWQQ 487
+ Q+
Sbjct: 480 LRQR 483
>gi|424890665|ref|ZP_18314264.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393172883|gb|EJC72928.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 482
Score = 293 bits (751), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 177/474 (37%), Positives = 249/474 (52%), Gaps = 18/474 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I+WFR+DLR++DN ALAA +G +I ++I P G WWL HSL LD S
Sbjct: 10 ILWFRKDLRLDDNHALAAADLSGRPIIPLYIKEPAAHSGAL-GAAQAWWLHHSLEALDGS 68
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
LR LV S +++ L ++ +GA +F+N YDP D R K L Q I
Sbjct: 69 LRKRQGRLVLA-SGEALDVLGALISESGAEAVFWNRCYDPSGTAIDIRIKHELQKQAIEA 127
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM----SR 182
RSF LLY+P + G P+ + FW + L +P+ P+ P ++ R
Sbjct: 128 RSFGGQLLYDPSRLMTGGGTPYRVYTPFW-RALEGAGEPERPVEAPAKLRLAAQLPKSER 186
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
S L+ ++ W+PG A + L +F+ L Y +NR TS
Sbjct: 187 LESWKLL---PTKPDWARDFGDLWTPGEQGAREKLRSFVEDGLDGYKENRDYPAKQATSL 243
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHL GE+S +++ R + + F K I RE+S ++ F+ P
Sbjct: 244 LSPHLALGEISPARIWDATR-------GLSKRMPAADILHFRKEIAWREFSYHLLFHFPR 296
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
F W D+ F AWR+G TGYP+VDAGMR+LW GW+H+R+R++V+SF
Sbjct: 297 LASDNWNARFDGFKWRNDDDDFAAWRRGMTGYPIVDAGMRQLWRHGWMHNRVRMIVASFL 356
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
+K L + WR G +F DTL+DAD ++A WQ+++G+ D F RI NP +G FDP
Sbjct: 357 IKDLMVDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQGQTFDPR 416
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
G+YVR +LPEL L +IH P+ APESVL +AGI LG YP PIV +A+ R
Sbjct: 417 GDYVRTYLPELRELAANYIHRPFEAPESVLDSAGIILGQTYPRPIVDHASARNR 470
>gi|341607473|gb|AEK83839.1| At4G08920-like protein [Capsella rubella]
gi|341607475|gb|AEK83840.1| At4G08920-like protein [Capsella rubella]
gi|341607513|gb|AEK83859.1| At4G08920-like protein [Capsella rubella]
gi|341607517|gb|AEK83861.1| At4G08920-like protein [Capsella rubella]
Length = 160
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 147/159 (92%), Positives = 152/159 (95%)
Query: 319 VDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFW 378
VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFW
Sbjct: 1 VDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFW 60
Query: 379 DTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPT 438
DTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVRRWLPEL+RLPT
Sbjct: 61 DTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPT 120
Query: 439 EWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
+WIHHPWNAPESVLQAAGIELGSNYP PIV +D AK RL
Sbjct: 121 DWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARL 159
>gi|341607467|gb|AEK83836.1| At4G08920-like protein [Capsella rubella]
gi|341607469|gb|AEK83837.1| At4G08920-like protein [Capsella rubella]
gi|341607471|gb|AEK83838.1| At4G08920-like protein [Capsella rubella]
gi|341607503|gb|AEK83854.1| At4G08920-like protein [Capsella rubella]
gi|341607505|gb|AEK83855.1| At4G08920-like protein [Capsella rubella]
Length = 161
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 147/160 (91%), Positives = 152/160 (95%)
Query: 318 VVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYF 377
VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYF
Sbjct: 1 AVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYF 60
Query: 378 WDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLP 437
WDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVRRWLPEL+RLP
Sbjct: 61 WDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLP 120
Query: 438 TEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
T+WIHHPWNAPESVLQAAGIELGSNYP PIV +D AK RL
Sbjct: 121 TDWIHHPWNAPESVLQAAGIELGSNYPRPIVGLDEAKARL 160
>gi|389796932|ref|ZP_10199978.1| deoxyribodipyrimidine photo lyase [Rhodanobacter sp. 116-2]
gi|388448025|gb|EIM04016.1| deoxyribodipyrimidine photo lyase [Rhodanobacter sp. 116-2]
Length = 470
Score = 293 bits (749), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 173/481 (35%), Positives = 261/481 (54%), Gaps = 17/481 (3%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
++V FRRDLR+ DNPA +A A V+ VFI +EG + G SRWWL HSL+ L
Sbjct: 3 TALVLFRRDLRLADNPAWSAACAEHAQVLPVFI-HSGDEGLWSAGAASRWWLHHSLAALA 61
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
L G L +R + + L ++ ++GA +++N LY+P ++ RD R K AL A GI
Sbjct: 62 RQLHDAGAGLHLRRG-EPLDILRALIASSGARAVYWNRLYEPAAIARDTRIKSALRADGI 120
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
AV S NA L EPW + Q P+ F +W + L P PL P ++
Sbjct: 121 AVHSHNAALWCEPWAIATQQAAPYKVFTPYW-RNLRPQLQPVEPLPAPHVPGWHELPDGL 179
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
+ + L AR W PG + A + L F + + +Y+ R TS LS
Sbjct: 180 PLAALELLPRIAWAGGLAAR-WQPGEAGARELLEIFGDDAIGDYAHARDLPARHGTSRLS 238
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
PHLHFGE+S R++ + + A + + +L+ +G RE++ ++ ++ P++
Sbjct: 239 PHLHFGEISPRQI----QFELDRRARATDARRRPDLEPYLRELGWREFAHHLLYHFPHTP 294
Query: 305 ERPLLGHLKFFSWV-VDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
F W D + W++GRTG PLVDAGMRELW TGW+H+R+R++V+SF
Sbjct: 295 TGNFNPRFNDFRWAPADHALLERWQRGRTGIPLVDAGMRELWRTGWMHNRVRMIVASFLT 354
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L+ W+ G ++FWDTL+DADL ++ LGWQ+++G D + R+ NP + KFDP+G
Sbjct: 355 KHLRQHWQHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPVTQAKKFDPDG 414
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSE 483
Y+RRWLPELA P +H PW + AG+ S YP P+V + ++ + +A +
Sbjct: 415 IYLRRWLPELAEAPLALLHEPW-------RDAGLLERSRYPAPMVELGQSRQQALDAYAA 467
Query: 484 M 484
+
Sbjct: 468 L 468
>gi|365901755|ref|ZP_09439584.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3843]
gi|365417509|emb|CCE12126.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. STM 3843]
Length = 480
Score = 293 bits (749), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 183/471 (38%), Positives = 256/471 (54%), Gaps = 10/471 (2%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I WFR LR+ D+PA+ A AGA VI VF++ G SRWWL SL L +S
Sbjct: 7 IAWFRESLRLSDHPAVHAAASAGAPVICVFVFDDRSPDVRPLGGASRWWLAQSLRSLQAS 66
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
LR++G LV +R + L + T A +F+N + +EAL A GI
Sbjct: 67 LRAVGGELVLRRGAPA-DVLRALASETNAAAVFWNDVAQAPQRAVAAEVEEALAALGIES 125
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS-GDMSRCPS 185
RSF DLL +P + G+ F FW++ L+M DP APL P+ + ++
Sbjct: 126 RSFPDDLLVDPAMLRAKDGRGLRVFTPFWKRVLAM-GDPPAPLPAPRSLPPVAGIASLAV 184
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
+ L E + L AR W PG + A + L TF+ Y+ +R + D TS L+P
Sbjct: 185 EDLQLEPTRPDWAGGLRAR-WQPGEAAAQQRLATFLGQTAKTYAADRDRPDLDATSHLAP 243
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
HL FGE+ R+V+H R A + A ++ FL +G RE+SR + ++ P
Sbjct: 244 HLRFGEIGPRQVWHAARF-----AASEHPAQAAGIDKFLSELGWREFSRQLLYDRPDLAT 298
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
L F W D +W++G TGYP+VDAGMR+LW +G +H+R+R+VV+SF VK
Sbjct: 299 CNLQTSFDDFPWRDDAPALASWQRGETGYPIVDAGMRQLWHSGTMHNRVRMVVASFLVKH 358
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
L + WR G ++FWDTL+DAD ++ GWQ+++G D + R+ NP +G KFDP+G Y
Sbjct: 359 LLIDWRAGEQWFWDTLVDADPANNPAGWQWVAGCGADAAPYFRVFNPVLQGEKFDPDGAY 418
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
VRRW+P LA+LP IH PW A L +AGI LG YP PIV A+ R
Sbjct: 419 VRRWVPGLAKLPAPLIHQPWRAAPLELASAGIALGRTYPAPIVDHKRARER 469
>gi|209364020|ref|YP_002268317.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway
5J108-111]
gi|207081953|gb|ACI23155.1| deoxyribodipyrimidine photolyase [Coxiella burnetii Dugway
5J108-111]
Length = 452
Score = 292 bits (748), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 163/448 (36%), Positives = 261/448 (58%), Gaps = 16/448 (3%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
+I WFR+DLR+ DNPAL + A +I ++I ++ G RWWL HSLS L
Sbjct: 2 TTIFWFRQDLRLSDNPALVEAAKSADHLIPLYI---LDDQLKMLGDAQRWWLHHSLSSLQ 58
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
++L GTSL+ K+ D+ LLE++K ++++N Y+P D + L +
Sbjct: 59 TALSKKGTSLILKKG-DTKRVLLELIKKYKVEKIYWNRSYEPPYREIDTYLENRLPP--L 115
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
+V +++ LL EP + + G + F FW K ++ P L PK+ + +
Sbjct: 116 SVEIYHSTLLTEPQKIKNKSGGYYKIFTPFW-KHINASLQPRKTLAAPKKFSQHRAIK-- 172
Query: 185 SDTLVFEDESEKGSN-ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
SD L + K + + W PG NA L FI L Y +R + D ++TS L
Sbjct: 173 SDNLETWNLLPKHPDWSQGFDQWKPGEKNAQIVLKKFIKENLKNYPAHRDRPDISSTSHL 232
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SP+LHFGE+S+R+V+ ++ A +K ++ ++FL+ + RE++ Y+ ++ P
Sbjct: 233 SPYLHFGEISIRQVW-----TAITQATIQDKNLQKAADVFLRQLIWREFAYYLLWHFPQM 287
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
+ F W ++ + +AW++G TGYP+VDAGMRELW TG++H+R R++V+SF V
Sbjct: 288 GKSNFRNQFDNFKWKKNKNWLRAWQKGLTGYPIVDAGMRELWCTGYMHNRARMIVASFLV 347
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WR G K+FW+TLLDADL ++ALGWQ+I+G D + RI NP + KFDP+G
Sbjct: 348 KDLMIDWREGEKWFWNTLLDADLANNALGWQWIAGCGLDAAPYFRIFNPILQSKKFDPDG 407
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESV 451
Y++RW+PELA++P+++IH+P + P+++
Sbjct: 408 TYIKRWIPELAKVPSKYIHYPADMPDNI 435
>gi|352080494|ref|ZP_08951433.1| Deoxyribodipyrimidine photo-lyase [Rhodanobacter sp. 2APBS1]
gi|351683775|gb|EHA66851.1| Deoxyribodipyrimidine photo-lyase [Rhodanobacter sp. 2APBS1]
Length = 470
Score = 292 bits (747), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 175/482 (36%), Positives = 262/482 (54%), Gaps = 19/482 (3%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
++V FRRDLR+ DNPA +A A V+ VFI +EG + G SRWWL HSL+ L
Sbjct: 3 TALVLFRRDLRLADNPAWSAACAEHAQVLPVFI-HSGDEGRWSAGAASRWWLHHSLAALA 61
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
L L +R + + L ++ ++GA +++N LY+P ++ RD R K AL A GI
Sbjct: 62 RQLHDASAGLHLRRG-EPLDILRALIASSGARAVYWNRLYEPAAIARDTRIKSALRADGI 120
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
AV S NA L EPW + Q P+ F +W + L P PL P ++
Sbjct: 121 AVHSHNAALWCEPWAIATQQAAPYKVFTPYW-RNLRPRLQPVEPLPAPHVPGWHELPDGL 179
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
+ + L AR W PG + A + L F + + +Y+ R TS LS
Sbjct: 180 PLAALELLPRIAWAGGLAAR-WQPGEAGARELLEIFGDDAIGDYAHARDLPARHGTSRLS 238
Query: 245 PHLHFGEVSVRKV-FHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
PHLHFGE+S R++ F L R A + + D + +L+ +G RE++ ++ ++ P++
Sbjct: 239 PHLHFGEISPRQIQFELDRRAH---ATDAKRRPD--LEPYLRELGWREFAHHLLYHFPHT 293
Query: 304 HERPLLGHLKFFSWV-VDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
F W D + W++GRTG PLVDAGMRELW TGW+H+R+R++V+SF
Sbjct: 294 PTDNFNPRFDDFPWAPADHALLERWQRGRTGIPLVDAGMRELWRTGWMHNRVRMIVASFL 353
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
K L+ W+ G ++FWDTL+DADL ++ LGWQ+++G D + R+ NP + KFDP+
Sbjct: 354 TKNLRQHWQHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPVTQAKKFDPD 413
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
G Y+RRWLPELA P +H PW + A + S YP P+V + ++ + +A +
Sbjct: 414 GIYLRRWLPELAEAPLALLHEPW-------RDADLLKRSGYPAPMVELGQSRQQALDAYA 466
Query: 483 EM 484
+
Sbjct: 467 AL 468
>gi|383783458|ref|YP_005468024.1| deoxyribodipyrimidine photo-lyase family protein [Leptospirillum
ferrooxidans C2-3]
gi|383082367|dbj|BAM05894.1| putative deoxyribodipyrimidine photo-lyase family protein
[Leptospirillum ferrooxidans C2-3]
Length = 483
Score = 291 bits (746), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 179/474 (37%), Positives = 254/474 (53%), Gaps = 31/474 (6%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
SIVWFR+DLR++DNPAL R+G ++ V+IW +E P SRWWL SL L
Sbjct: 3 TSIVWFRKDLRLKDNPALFHSARSGPILPVYIW--DETLPEQEEGASRWWLHESLLSLAR 60
Query: 66 SLRSLGTSLVTKR-STDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
SL S G+ LV R ST V L+ K + A ++ +N L +P + D K+ L + G+
Sbjct: 61 SLSSTGSPLVFARGSTKEV--LVHFAKRSNAQKIVWNELTEPWAKTFDLSLKKELLSTGL 118
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V ++ DLL +P + G P+ F FW K L DP AP P+RI P
Sbjct: 119 KVETYPPDLLSDPESMMGKNG-PYRVFGQFW-KRLRPALDPSAPFPAPERIFP------P 170
Query: 185 SDTLVFEDESEKGSN-------ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
+++ E E G N + W PG A L TF++ L Y KNR + D
Sbjct: 171 EFSVISEYLPEWGWNPSRPDWAKEMREKWIPGEEQAHMTLNTFLDERLQSYEKNRDRLDH 230
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIK---QVSWANEGNKAGDESVNLFLKSIGLREYSR 294
S LSP LH GE++ R++ K W N+G K FL +G RE+SR
Sbjct: 231 EGYSMLSPFLHAGEITSRQIVRATLDKMHEHPGWQNDGEK--------FLSELGWREFSR 282
Query: 295 YMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
Y+ + P P F W + AW+ G+TGYP++DA MR+LWA G++ +R
Sbjct: 283 YLLIHFPKMISEPFQPKFSSFPWKDNPEALLAWKSGKTGYPVIDATMRQLWAIGYIPNRS 342
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R++ +SF K L + W+ G ++F +TL+D DL ++ + WQ++SG D + RI NP
Sbjct: 343 RMISASFLTKDLLISWKEGARWFRETLVDHDLANNTVSWQWVSGMGVDAAPYFRIYNPVL 402
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
+G ++DP G +R+W+PE+ LP +WIH PW APE +L+ AGI LG YP PIV
Sbjct: 403 QGERYDPEGIAIRKWIPEIKGLPNQWIHRPWEAPEPLLKRAGIILGKTYPAPIV 456
>gi|121997706|ref|YP_001002493.1| deoxyribodipyrimidine photo-lyase [Halorhodospira halophila SL1]
gi|121589111|gb|ABM61691.1| Deoxyribodipyrimidine photo-lyase [Halorhodospira halophila SL1]
Length = 477
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 178/471 (37%), Positives = 253/471 (53%), Gaps = 11/471 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIA-VFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VW RRDLR+ D PALA + +A V+I AP E P G S WWL HSL+ LD+
Sbjct: 4 ALVWLRRDLRLADQPALARAAQTAERLAPVYIHAPAETRPTV-GAASCWWLHHSLAALDA 62
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L S G+ L + S L + + A ++ + +P + ++ EAL A G+
Sbjct: 63 ELASAGSRLCLD-TGPSAERLCHWAQVSDAAVVYCTAIAEPWARQQEAAVAEALAAIGVR 121
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
+ LL +P V + G P+ F FW + + DP P PP + P
Sbjct: 122 LEVLADGLLTDPSAVRNRSGTPYRAFTPFW-RSVRAQLDPPRPAPPPALPGLPEAIPEPQ 180
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
+ LA W PG + A + L F++G Y + R TS LSP
Sbjct: 181 PLETLGLLPRIRWDEKLAPCWQPGAAGAQQRLERFLDGAGPAYGERRDFPAQPGTSRLSP 240
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
HLHFGE+S+R V+H VR Q + A ++++ FL +G RE++ ++ + P H
Sbjct: 241 HLHFGEISIRAVWHAVRDAQ-----QMQPAAADALDTFLAELGWREFAYHLLWQQPELHR 295
Query: 306 RPLLGHLKFFSWVVDE--GYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
P+ F W D AWR+G TG PLVDAGMRELWATGW+H+R+R+VV SF V
Sbjct: 296 TPIDERFSRFPWREDPDGALLDAWRRGATGIPLVDAGMRELWATGWMHNRVRMVVGSFLV 355
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L+LPW+ G +F DTL+D DL S+++GWQ++SG D + RI NP +G +FDP+G
Sbjct: 356 KNLRLPWQHGEAHFRDTLVDWDLASNSMGWQWVSGCGADAAPYFRIFNPVRQGERFDPDG 415
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
+YVR W+PE+A LP IH PW AP G+ LG +YP P+V + ++
Sbjct: 416 DYVRHWVPEVAGLPKSHIHQPWAAPADARARCGLHLGRDYPEPLVDLATSR 466
>gi|126439700|ref|YP_001059701.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 668]
gi|126219193|gb|ABN82699.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 668]
Length = 486
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 193/485 (39%), Positives = 270/485 (55%), Gaps = 16/485 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFR DLRV D+PAL +G VI V+++ E G G +RWWL SL L +
Sbjct: 10 AVVWFRDDLRVSDHPALMRAAESGRPVIGVYVF-DERAGGRPLGGAARWWLHGSLRALGA 68
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L +LG +L R D +++ A GA ++++ Y + D+ + AL AQGIA
Sbjct: 69 ALAALGGTLALLRG-DEHDTIVSFAAALGAGAVYWSRRYALAARAVDNAVQTALDAQGIA 127
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM----- 180
V +FNA LL+EP D+ +A G+P+ F+A+W + P PL P+R+N G +
Sbjct: 128 VETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGV-PAPPLGAPRRLNGGALPAALA 186
Query: 181 SRCPS-DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+C + D L E + L AW G A + L F++ L Y+ R + A+
Sbjct: 187 RQCVALDALGLEPTGPDWAGGL-RDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIAS 245
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP++ FG +S R+++H A ++ FL +G RE+ + +
Sbjct: 246 TSRLSPYVRFGNLSARQLWHAAADAYAH-----GAATQADLDKFLSELGWREFGWTLLHH 300
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P R L L W D AWR+G TGYP VDAGMRELWATGW+H+R+R+V +
Sbjct: 301 FPDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCA 360
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L + WR G +FWDTL+DAD S+A WQ+++G D + RI NP +G KF
Sbjct: 361 SFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKF 420
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP+G YVRRW+PELA LP IH PW AP + L AAG+ LG YP PIV DAA+ R +
Sbjct: 421 DPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALD 480
Query: 480 ALSEM 484
A +
Sbjct: 481 AFGAI 485
>gi|386818429|ref|ZP_10105647.1| DNA photolyase FAD-binding [Thiothrix nivea DSM 5205]
gi|386423005|gb|EIJ36840.1| DNA photolyase FAD-binding [Thiothrix nivea DSM 5205]
Length = 476
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 185/485 (38%), Positives = 258/485 (53%), Gaps = 45/485 (9%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVW R+DLR+ DNPAL + A VI +FI P G S+ WL HSL LD+
Sbjct: 4 AIVWLRQDLRLADNPALYHACKTCANVILIFIDDPLPGSVSRLGAASQVWLHHSLQALDA 63
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SL++ G L T R ++ L ++ TGAT +++N +YDP SL RD + KE L Q
Sbjct: 64 SLQAAGNRL-TLRQGSALPVLQALLAETGATHVYWNRVYDPASLARDKQIKEILK-QSCT 121
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
V SFNA LL EPW+V A G P+ F FW+ L PL P++I P+
Sbjct: 122 VHSFNASLLNEPWEVLKADGTPYKVFTPFWKAMLKHGIQ-HLPLPAPEQI--------PA 172
Query: 186 DTLVFEDESEKGSNALLARA---------WSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
T F LL R W G + A + L F+ +Y R
Sbjct: 173 PT-SFPRSLALNELGLLPRTHWDTGMMAHWPAGETAAMQKLLDFLPLGGADYKNARNFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRK-VFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
T+ LSPHLHFGE+S R+ V+H + A + + F++ IG RE++ Y
Sbjct: 232 QHGTAQLSPHLHFGEISPRQAVYHTEAFL------AEHPAAESGLRHFIQEIGWREFAWY 285
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVDE-GYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
+ ++ P++ ++ L K F W D + WR+G+TGYP++DAGMRELW TGW+H+R+
Sbjct: 286 LLYHFPHTVDQALDERFKHFPWAEDYVENLEHWRRGQTGYPIIDAGMRELWQTGWMHNRV 345
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R++V+S K L +PW+ G +F DTL+DADL S+ LGWQ+ +G D + RI NP
Sbjct: 346 RMIVASLLTKNLLIPWQEGENWFRDTLVDADLASNVLGWQWTAGCGADAAPYFRIFNPIL 405
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELG---SNYPFPIVRID 471
+ KFDP GEY+RRW+PEL + IH P ELG ++YP PIV
Sbjct: 406 QSQKFDPEGEYIRRWVPELRARDNKQIHLP------------RELGDGLTDYPLPIVDFK 453
Query: 472 AAKCR 476
A++ R
Sbjct: 454 ASRER 458
>gi|254247729|ref|ZP_04941050.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia PC184]
gi|124872505|gb|EAY64221.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia PC184]
Length = 531
Score = 290 bits (743), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 182/472 (38%), Positives = 246/472 (52%), Gaps = 19/472 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFR DLRV D PAL V +G ++ VFI G +RWWL SL+ LD+
Sbjct: 49 AIVWFRDDLRVTDQPALTRAVESGRPLVCVFIDDTGAGAGPALGGAARWWLHGSLARLDT 108
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L G L+ R D+ + VV TGA +++N Y D K +L A+G+
Sbjct: 109 ALARHGGRLLLLRG-DAQREIERVVGDTGAAAVYWNRRYAQPQRDADAALKASLKARGVT 167
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
V S N LL EPW+V G P+ F A+W + APL P+RI P
Sbjct: 168 VESSNGSLLNEPWEVLTGSGGPYQVFTAYW-RAARRDRTVAAPLPAPERIA---FHPWPQ 223
Query: 186 DTLVFEDESEKGSNALLARAWSPG----WSNADKA-----LTTFINGPLIEYSKNRRKAD 236
+ + A W+ G W D+A L TF+ L Y+ R + D
Sbjct: 224 AVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGALARLDTFLTTSLAGYADARDRPD 283
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LSP L FG VS R+V+H V+ AN G + FL +G RE+S +
Sbjct: 284 RPATSRLSPFLRFGNVSPRQVWHAVQGA----ANAGGAVYAAHADKFLSELGWREFSYTL 339
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
++ P W D +AW++GRTGYPLVDAG+RELW TGW+H+R+R+
Sbjct: 340 LYHFPALATDNFRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMHNRVRM 399
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
VV+SF +K L + WR G +F DTL+DAD ++A WQ+++G D + RI NP +G
Sbjct: 400 VVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFRIFNPVAQG 459
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
K DP+G YVRRW+PELA L IH PW A L+AAG+ LG +YP P+V
Sbjct: 460 QKCDPDGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGVRLGIDYPAPLV 511
>gi|297180123|gb|ADI16346.1| deoxyribodipyrimidine photolyase [uncultured bacterium HF130_01F24]
Length = 478
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 165/480 (34%), Positives = 256/480 (53%), Gaps = 22/480 (4%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
M+ SIVWFR+DLR++DNPAL G V+ ++I + + GR S+WWL SL
Sbjct: 1 MASDTKSIVWFRQDLRLQDNPALEFAASVGEVLPIYIVDEKNAADWRLGRASQWWLNESL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
L+ S+ +L R D + + +++ + +F+N Y+P ++RD K +
Sbjct: 61 RSLNESMNG---ALCLYRG-DPLGIIEKLITEHSISNIFWNRCYEPWQVLRDKTIKSEVR 116
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWE--KCLSMPFDPDAPLLPPKRINSG 178
G RSFN LL EPW++ + G P+ F F++ + P + + R S
Sbjct: 117 KFGAKARSFNGFLLNEPWEIAKSDGTPYKVFTPFYKQSRLKGTPREASIDYVSKIRFVSN 176
Query: 179 DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
D+L +E++ + +A W+PG ++ L F+ L Y R D
Sbjct: 177 SKKNREIDSLNLLNENDWSTE--MASRWTPGERGGEQVLKLFLERGLCNYKIGRDFPDKE 234
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNL----FLKSIGLREYSR 294
S LSP+LHFGE+S V+H V N A E++ F + + RE+S
Sbjct: 235 AVSRLSPYLHFGELSPNYVWHKV----------NNFAVLENIETQAEHFHRELVWREFSY 284
Query: 295 YMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
+ P R L F W ++ + K WR G TGYPL+DAGMREL +TG++H+R+
Sbjct: 285 SLIHYFPDLTYRNLNRRFDDFPWKKNDQFMKKWRTGMTGYPLIDAGMRELASTGYMHNRV 344
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R++ +SF VK L + WR G ++FWD+L+DADL +++ WQ+++G+ D + RI NP
Sbjct: 345 RMITASFLVKNLLIDWRNGAEWFWDSLIDADLANNSCSWQWVAGSGADAAPYFRIFNPVT 404
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
+ KFDP+ +Y+RRW+ EL + P ++IH P +APES LQ GI+L YP IV + ++
Sbjct: 405 QSKKFDPDAKYIRRWITELEKCPNKYIHDPSSAPESELQHFGIKLDQTYPSAIVDLKTSR 464
>gi|254184299|ref|ZP_04890889.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1655]
gi|184214830|gb|EDU11873.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1655]
Length = 534
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 193/485 (39%), Positives = 269/485 (55%), Gaps = 16/485 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFR DLRV D+PAL +G VI V+++ E G G +RWWL SL L +
Sbjct: 58 AVVWFRDDLRVSDHPALMRAAESGRPVIGVYVF-DERAGGRPLGGAARWWLHGSLRALGA 116
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L +LG +L R D +++ A GA ++++ Y + D+ + AL AQGIA
Sbjct: 117 ALAALGGTLALLRG-DEHDTIVSFAAALGAGAVYWSRRYALAARAVDNAVQTALDAQGIA 175
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM----- 180
V +FNA LL+EP D+ +A G+P+ F+A+W + P PL P+R+N G +
Sbjct: 176 VETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGV-PAPPLGAPRRLNGGALPAALA 234
Query: 181 SRCPS-DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+C + D L E + L AW G A + L F++ L Y+ R + A+
Sbjct: 235 RQCVALDALGLEPTGPDWAGGLR-DAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIAS 293
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP++ FG +S R+++H A ++ FL +G RE+ +
Sbjct: 294 TSRLSPYVRFGNLSARQLWHAAADAYAH-----GAATQADLDKFLSELGWREFGWTQLHH 348
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P R L L W D AWR+G TGYP VDAGMRELWATGW+H+R+R+V +
Sbjct: 349 FPDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCA 408
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L + WR G +FWDTL+DAD S+A WQ+++G D + RI NP +G KF
Sbjct: 409 SFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKF 468
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP+G YVRRW+PELA LP IH PW AP + L AAG+ LG YP PIV DAA+ R +
Sbjct: 469 DPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALD 528
Query: 480 ALSEM 484
A +
Sbjct: 529 AFGAI 533
>gi|389772571|ref|ZP_10192146.1| deoxyribodipyrimidine photo lyase [Rhodanobacter sp. 115]
gi|388429582|gb|EIL86900.1| deoxyribodipyrimidine photo lyase [Rhodanobacter sp. 115]
Length = 471
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 184/485 (37%), Positives = 274/485 (56%), Gaps = 24/485 (4%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
++V FRRDLR+ DNPA +A A A VI V+I AP E+GP+ G SRWWL HSL+ LD
Sbjct: 3 TALVVFRRDLRLADNPAWSAACAAHAQVIPVYIHAPGEDGPWSIGSASRWWLHHSLAALD 62
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
LR+ +L R D++ L E+V+ +GA +++N LY+P + RD R K AL QG
Sbjct: 63 RRLRAHHVALHL-RQGDTLEVLRELVRRSGADAVYWNRLYEPALIERDTRIKSALREQGT 121
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEK--CLSMPFDP-DAPLLPPKRINSGDMS 181
AV S L EPW + Q P+ F +W K L P +P P++P + SG +
Sbjct: 122 AVHSHPGTLWCEPWQIATQQDAPYKVFTPYWRKLRTLLQPVEPLPEPVVPGWQALSGSLP 181
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
G ++ LA W PG A + L F + + +Y+ R TS
Sbjct: 182 -----LSALALLPRIGWDSGLAETWQPGEDGAHELLEIFADDAIGDYAHARDLPARHGTS 236
Query: 242 FLSPHLHFGEVSVRKV-FHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
LSPHLHFGE+S R++ F L R + A + + D + +L+ +G RE++ ++ ++
Sbjct: 237 RLSPHLHFGEISPRQIHFELDRRAR---AIDAKRRPD--IEPYLRELGWREFAHHLLYHF 291
Query: 301 PYSHERPLLGHLKFFSWVV-DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P++ F W D+ + W+ GRTG PLVDAGMRELW TGW+H+R+R++V+
Sbjct: 292 PHTPTDNFNPRFDGFRWAAADQSLIERWQHGRTGIPLVDAGMRELWHTGWMHNRVRMIVA 351
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
S K L+ W+ G ++FWDTL+DADL ++ LGWQ+++G D + R+ NP + KF
Sbjct: 352 SLLTKNLRQHWQHGARWFWDTLVDADLANNTLGWQWVAGCGADAAPYFRVFNPVTQAKKF 411
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP+G Y+RRWLPELA P +H PW E++L+ +G YP P++ + ++ R +
Sbjct: 412 DPDGTYLRRWLPELAAAPLALLHEPWKD-EALLKRSG------YPAPMIDLGQSRQRALD 464
Query: 480 ALSEM 484
A + +
Sbjct: 465 AYAAL 469
>gi|53719958|ref|YP_108944.1| DNA photolyase [Burkholderia pseudomallei K96243]
gi|126453768|ref|YP_001066985.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106a]
gi|134277838|ref|ZP_01764553.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 305]
gi|226200012|ref|ZP_03795562.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei
Pakistan 9]
gi|242315962|ref|ZP_04814978.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106b]
gi|254195952|ref|ZP_04902378.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei S13]
gi|254296960|ref|ZP_04964413.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 406e]
gi|386861077|ref|YP_006274026.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1026b]
gi|418380478|ref|ZP_12966443.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 354a]
gi|418537248|ref|ZP_13102889.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1026a]
gi|418540357|ref|ZP_13105904.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1258a]
gi|418546604|ref|ZP_13111810.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1258b]
gi|418552828|ref|ZP_13117676.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 354e]
gi|52210372|emb|CAH36352.1| putative DNA photolyase [Burkholderia pseudomallei K96243]
gi|126227410|gb|ABN90950.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106a]
gi|134251488|gb|EBA51567.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 305]
gi|157807746|gb|EDO84916.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 406e]
gi|169652697|gb|EDS85390.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei S13]
gi|225928068|gb|EEH24105.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei
Pakistan 9]
gi|242139201|gb|EES25603.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1106b]
gi|385350248|gb|EIF56796.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1026a]
gi|385362092|gb|EIF67936.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1258a]
gi|385364061|gb|EIF69807.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1258b]
gi|385372519|gb|EIF77626.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 354e]
gi|385377308|gb|EIF81897.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 354a]
gi|385658205|gb|AFI65628.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1026b]
Length = 486
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 193/485 (39%), Positives = 269/485 (55%), Gaps = 16/485 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFR DLRV D+PAL +G VI V+++ E G G +RWWL SL L +
Sbjct: 10 AVVWFRDDLRVSDHPALMRAAESGRPVIGVYVF-DERAGGRPLGGAARWWLHGSLRALGA 68
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L +LG +L R D +++ A GA ++++ Y + D+ + AL AQGIA
Sbjct: 69 ALAALGGTLALLRG-DEHDTIVSFAAALGAGAVYWSRRYALAARAVDNAVQTALDAQGIA 127
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM----- 180
V +FNA LL+EP D+ +A G+P+ F+A+W + P PL P+R+N G +
Sbjct: 128 VETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGV-PAPPLGAPRRLNGGALPAALA 186
Query: 181 SRCPS-DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+C + D L E + L AW G A + L F++ L Y+ R + A+
Sbjct: 187 RQCVALDALGLEPTGPDWAGGL-RDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIAS 245
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP++ FG +S R+++H A ++ FL +G RE+ +
Sbjct: 246 TSRLSPYVRFGNLSARQLWHAAADAYAH-----GAATQADLDKFLSELGWREFGWTQLHH 300
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P R L L W D AWR+G TGYP VDAGMRELWATGW+H+R+R+V +
Sbjct: 301 FPDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCA 360
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L + WR G +FWDTL+DAD S+A WQ+++G D + RI NP +G KF
Sbjct: 361 SFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKF 420
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP+G YVRRW+PELA LP IH PW AP + L AAG+ LG YP PIV DAA+ R +
Sbjct: 421 DPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALD 480
Query: 480 ALSEM 484
A +
Sbjct: 481 AFGAI 485
>gi|254191331|ref|ZP_04897835.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei Pasteur
52237]
gi|157939003|gb|EDO94673.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei Pasteur
52237]
Length = 534
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 193/485 (39%), Positives = 269/485 (55%), Gaps = 16/485 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFR DLRV D+PAL +G VI V+++ E G G +RWWL SL L +
Sbjct: 58 AVVWFRDDLRVSDHPALMRAAESGRPVIGVYVF-DERAGGRPLGGAARWWLHGSLRALGA 116
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L +LG +L R D +++ A GA ++++ Y + D+ + AL AQGIA
Sbjct: 117 ALAALGGTLALLRG-DEHDTIVSFAAALGAGAVYWSRRYALAARAVDNAVQTALDAQGIA 175
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM----- 180
V +FNA LL+EP D+ +A G+P+ F+A+W + P PL P+R+N G +
Sbjct: 176 VETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGV-PAPPLGAPRRLNGGALPAALA 234
Query: 181 SRCPS-DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+C + D L E + L AW G A + L F++ L Y+ R + A+
Sbjct: 235 RQCVALDALGLEPTGPDWAGGL-RDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIAS 293
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP++ FG +S R+++H A ++ FL +G RE+ +
Sbjct: 294 TSRLSPYVRFGNLSARQLWHAAADAYAH-----GAATQADLDKFLSELGWREFGWTQLHH 348
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P R L L W D AWR+G TGYP VDAGMRELWATGW+H+R+R+V +
Sbjct: 349 FPDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCA 408
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L + WR G +FWDTL+DAD S+A WQ+++G D + RI NP +G KF
Sbjct: 409 SFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKF 468
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP+G YVRRW+PELA LP IH PW AP + L AAG+ LG YP PIV DAA+ R +
Sbjct: 469 DPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALD 528
Query: 480 ALSEM 484
A +
Sbjct: 529 AFGAI 533
>gi|402851511|ref|ZP_10899666.1| Deoxyribodipyrimidine photolyase [Rhodovulum sp. PH10]
gi|402498244|gb|EJW10001.1| Deoxyribodipyrimidine photolyase [Rhodovulum sp. PH10]
Length = 493
Score = 290 bits (742), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 181/477 (37%), Positives = 257/477 (53%), Gaps = 7/477 (1%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFR DLRV D+PAL + R G V A+F+ E G G +RWWL SL L
Sbjct: 14 LVWFRDDLRVADHPALDSAARKGLPVAALFVLDEESPGLRPLGGAARWWLAGSLRALGEG 73
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L G +LV +R + + + EV A GAT + +N Y+P + D + AL QG+AV
Sbjct: 74 LAQRGVTLVLRRG-GAATVVPEVAAAAGATTVAWNRRYEPAAATIDRTVEAALARQGVAV 132
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGD-MSRCPS 185
+F A LL EP + G+PFA F F L+ P P APL P + + ++
Sbjct: 133 ETFQASLLAEPEALRTKSGKPFAVFTPFLRAVLAGP-SPRAPLPAPGPMQGVEGLASDAL 191
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
D E + + L W+ G + A L+ F+ L Y+ R + D TS LSP
Sbjct: 192 DDWALEPQRPDWAGGLR-ETWTRGEAAAQARLSEFVEDGLAGYADKRDRPDLPHTSRLSP 250
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
L FGE+S +VF + + A G + D V+ F+ + RE+S ++ HP
Sbjct: 251 RLRFGELSPFQVFSAAALARE--APPGRRPSDTDVDKFVAELVWREFSWHLLAAHPDIAT 308
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
+ F W D AW++G TGYP+VDAGMRELW TGW+H+R+R+V +SF VK
Sbjct: 309 ANIQEKFDAFPWRDDPAALSAWQRGETGYPIVDAGMRELWTTGWMHNRVRMVAASFLVKH 368
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
L WR G ++F DTL+DAD S+ WQ+++G+ D + RI NP +G KFDP G+Y
Sbjct: 369 LLTDWRAGERWFQDTLVDADAASNPASWQWVAGSGADAAPYFRIFNPVLQGRKFDPAGDY 428
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
VR+++P L LP +H P+ A L AAG+ LG YP P+V ++A + R +AL+
Sbjct: 429 VRQFVPALRSLPAPAVHAPFAARPLDLAAAGVTLGKTYPAPVVDLEAGRERALDALA 485
>gi|403519410|ref|YP_006653544.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei BPC006]
gi|403075053|gb|AFR16633.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei BPC006]
Length = 497
Score = 289 bits (740), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 193/485 (39%), Positives = 269/485 (55%), Gaps = 16/485 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFR DLRV D+PAL +G VI V+++ E G G +RWWL SL L +
Sbjct: 21 AVVWFRDDLRVSDHPALMRAAESGRPVIGVYVF-DERAGGRPLGGAARWWLHGSLRALGA 79
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L +LG +L R D +++ A GA ++++ Y + D+ + AL AQGIA
Sbjct: 80 ALAALGGTLALLRG-DEHDTIVSFAAALGAGAVYWSRRYALAARAVDNAVQTALDAQGIA 138
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM----- 180
V +FNA LL+EP D+ +A G+P+ F+A+W + P PL P+R+N G +
Sbjct: 139 VETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGV-PAPPLGAPRRLNGGALPAALA 197
Query: 181 SRCPS-DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+C + D L E + L AW G A + L F++ L Y+ R + A+
Sbjct: 198 RQCVALDALGLEPTGPDWAGGL-RDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIAS 256
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP++ FG +S R+++H A ++ FL +G RE+ +
Sbjct: 257 TSRLSPYVRFGNLSARQLWHAAADAYAH-----GAATQADLDKFLSELGWREFGWTQLHH 311
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P R L L W D AWR+G TGYP VDAGMRELWATGW+H+R+R+V +
Sbjct: 312 FPDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCA 371
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L + WR G +FWDTL+DAD S+A WQ+++G D + RI NP +G KF
Sbjct: 372 SFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKF 431
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP+G YVRRW+PELA LP IH PW AP + L AAG+ LG YP PIV DAA+ R +
Sbjct: 432 DPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALD 491
Query: 480 ALSEM 484
A +
Sbjct: 492 AFGAI 496
>gi|116671293|ref|YP_832226.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter sp. FB24]
gi|116611402|gb|ABK04126.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter sp. FB24]
Length = 474
Score = 289 bits (740), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 177/486 (36%), Positives = 247/486 (50%), Gaps = 24/486 (4%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
+IVW R DLR++DNPALA G + V+I E G G ++WWL HSL L
Sbjct: 3 STIVWLRDDLRLDDNPALADAAAMGHPLTVVYILDEESPGVRPLGGAAKWWLHHSLVSLA 62
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
L + G+ LV +R + + + E+ TGAT L +N Y D K QG+
Sbjct: 63 GGLEAAGSRLVLRRGS-AAGIIQELAAETGATHLRWNRRYGGPERSIDAGVKAWAGEQGL 121
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCL--SMPFDP-DAPLLPPKRINSGDMS 181
SF A L++EPW V G P+ F FW CL P P D P P GD
Sbjct: 122 DAASFQASLMFEPWTVRTGAGGPYKVFTPFWRACLESGEPRIPSDGPGTLPHPAGHGDGG 181
Query: 182 RCPSDTLVFEDESEKGSN--ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
SD L + + A LA W+PG + A L F++GP+ EY R +
Sbjct: 182 PPQSDDLDSWALLPRTPDWSAGLAEQWTPGEAGAHSRLKDFLDGPVEEYGTGRDRPGVEG 241
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSPHL FGE+S +++H +R + + V +F +G RE+ + +
Sbjct: 242 TSRLSPHLRFGEISPFRIWHALRERF-------PRQAPADVGIFRSELGWREFCWQLLYE 294
Query: 300 HPYSHERPLLGHLKFFSWVV-DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
+P R F W + +AW+QGRTGYPLVDAGMR+LW TGW+H+R+R+
Sbjct: 295 NPELASRNYRPDFDRFEWQTPSDAELEAWQQGRTGYPLVDAGMRQLWQTGWMHNRVRMAA 354
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L WR G +FWDTL+DAD S+ WQ+++G+ D + RI NP + K
Sbjct: 355 ASFLVKNLLADWRLGEAWFWDTLVDADSASNPANWQWVAGSGADASPYFRIFNPVTQSKK 414
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FD G Y+R ++PE+A L + IH PW AP EL + YP P+V + ++ R
Sbjct: 415 FDAAGRYLREFIPEIANLSEKEIHEPWKAP---------ELAAGYPEPLVGLPESRERAL 465
Query: 479 EALSEM 484
E ++
Sbjct: 466 ETYQKL 471
>gi|237813094|ref|YP_002897545.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei
MSHR346]
gi|237504878|gb|ACQ97196.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei
MSHR346]
Length = 486
Score = 289 bits (740), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 193/485 (39%), Positives = 269/485 (55%), Gaps = 16/485 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFR DLRV D+PAL +G VI V+++ E G G +RWWL SL L +
Sbjct: 10 AVVWFRDDLRVSDHPALMRAAESGRPVIGVYVF-DERVGGRPLGGAARWWLHGSLRALGA 68
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L +LG +L R D +++ A GA ++++ Y + D+ + AL AQGIA
Sbjct: 69 ALAALGGTLALLRG-DEHDTIVSFAAALGAGAVYWSRRYALAARAVDNAVQTALDAQGIA 127
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM----- 180
V +FNA LL+EP D+ +A G+P+ F+A+W + P PL P+R+N G +
Sbjct: 128 VETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGV-PAPPLGAPRRLNGGALPAALA 186
Query: 181 SRCPS-DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+C + D L E + L AW G A + L F++ L Y+ R + A+
Sbjct: 187 RQCVALDALGLEPTGPDWAGGL-RDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIAS 245
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP++ FG +S R+++H A ++ FL +G RE+ +
Sbjct: 246 TSRLSPYVRFGNLSARQLWHAAADAYAH-----GAATQADLDKFLSELGWREFGWTQLHH 300
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P R L L W D AWR+G TGYP VDAGMRELWATGW+H+R+R+V +
Sbjct: 301 FPDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCA 360
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L + WR G +FWDTL+DAD S+A WQ+++G D + RI NP +G KF
Sbjct: 361 SFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKF 420
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP+G YVRRW+PELA LP IH PW AP + L AAG+ LG YP PIV DAA+ R +
Sbjct: 421 DPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALD 480
Query: 480 ALSEM 484
A +
Sbjct: 481 AFGAI 485
>gi|76808656|ref|YP_334184.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710b]
gi|254258748|ref|ZP_04949802.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710a]
gi|76578109|gb|ABA47584.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710b]
gi|254217437|gb|EET06821.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 1710a]
Length = 486
Score = 289 bits (740), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 193/485 (39%), Positives = 268/485 (55%), Gaps = 16/485 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFR DLRV D+PAL +G VI V+++ E G G +RWWL SL L +
Sbjct: 10 AVVWFRDDLRVSDHPALMRAAESGRPVIGVYVF-DERAGGRPLGGAARWWLHGSLRALGA 68
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L +LG +L R D +++ A GA ++++ Y D+ + AL AQGIA
Sbjct: 69 ALAALGGTLALLRG-DEHDTIVSFAAALGAGAVYWSRRYALAPRAVDNAVQTALDAQGIA 127
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM----- 180
V +FNA LL+EP D+ +A G+P+ F+A+W + P PL P+R+N G +
Sbjct: 128 VETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGV-PAPPLGAPRRLNGGALPAALA 186
Query: 181 SRCPS-DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+C + D L E + L AW G A + L F++ L Y+ R + A+
Sbjct: 187 RQCVALDALGLEPTGPDWAGGL-RDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIAS 245
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP++ FG +S R+++H A ++ FL +G RE+ +
Sbjct: 246 TSRLSPYVRFGNLSARQLWHAAADAYAH-----GAATQADLDKFLSELGWREFGWTQLHH 300
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P R L L W D AWR+G TGYP VDAGMRELWATGW+H+R+R+V +
Sbjct: 301 FPDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCA 360
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L + WR G +FWDTL+DAD S+A WQ+++G D + RI NP +G KF
Sbjct: 361 SFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKF 420
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP+G YVRRW+PELA LP IH PW AP + L AAG+ LG YP PIV DAA+ R +
Sbjct: 421 DPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALD 480
Query: 480 ALSEM 484
A +
Sbjct: 481 AFGAI 485
>gi|325292582|ref|YP_004278446.1| DNA photolyase [Agrobacterium sp. H13-3]
gi|325060435|gb|ADY64126.1| DNA photolyase [Agrobacterium sp. H13-3]
Length = 479
Score = 288 bits (738), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 180/481 (37%), Positives = 261/481 (54%), Gaps = 18/481 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGV-RAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
IVWFR+DLR+ DN AL A V G VI ++I GP G WWL HSL+ L ++
Sbjct: 9 IVWFRKDLRLADNLALLAAVEHGGPVIPIYI-RETSSGPL--GGAQEWWLHHSLASLSAA 65
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L G+ L+ RS ++ +L ++ TGA + +N Y+P + D KEAL G+ V
Sbjct: 66 LEKCGSRLLL-RSGNAEETLRRLIAETGADAVLWNRRYEPTGMATDKAIKEALGDDGLTV 124
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM---SRC 183
RSF LL+EP V G P+ + FW + L +P P P+ + + + S
Sbjct: 125 RSFAGHLLHEPSRVQTKSGGPYRVYTPFW-RALEGSEEPHTPADAPQSLKAPETWSKSEK 183
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
D + + + + + W+PG + A + L FI+G L Y + R TS L
Sbjct: 184 LDDWKLLPVKPDWAKD--FSEIWTPGENAAREKLDDFIDGALKGYEEGRDFPAKDATSLL 241
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
+PHL GE+S V+H + ++ F K + RE+ ++ F+ P
Sbjct: 242 APHLALGEISPAAVWHATK-------GLSRHIASNDISRFRKELVWREFCYHLLFHFPEL 294
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
E+ F W D+ F AW +G TGYP+VDAGMR+LW G +H+R+R++V+SF +
Sbjct: 295 DEKNWNDSFGAFGWRDDDTSFNAWTRGMTGYPIVDAGMRQLWKHGTMHNRVRMIVASFLI 354
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WR G K+F DTL+DAD S+A WQ+++G+ D F RI NP +G KFD G
Sbjct: 355 KHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPILQGEKFDAEG 414
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSE 483
+YVRR++PEL RL ++IH P+ AP+ VL+ AGIELG YP PIV A+ R A +E
Sbjct: 415 DYVRRFVPELERLERKYIHKPFEAPKEVLKKAGIELGKTYPLPIVDHGKARERALAAYAE 474
Query: 484 M 484
+
Sbjct: 475 V 475
>gi|427429184|ref|ZP_18919220.1| Deoxyribodipyrimidine photolyase [Caenispirillum salinarum AK4]
gi|425880864|gb|EKV29558.1| Deoxyribodipyrimidine photolyase [Caenispirillum salinarum AK4]
Length = 481
Score = 288 bits (738), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 181/481 (37%), Positives = 249/481 (51%), Gaps = 35/481 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFI-------WAPEEEGPYYPGRVSRWWLKHS 59
IV FR DLR+ D+ AL+A V GA VI +++ A E P G RWWL +S
Sbjct: 11 IVLFRDDLRLADHRALSAAVGTGAPVIPLYVVDTAHGLGAGETARPL--GGAVRWWLHYS 68
Query: 60 LSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
L L LR+LG+ L+ R+ + +V TGA ++ N P R AL
Sbjct: 69 LESLSEGLRALGSRLIL-RAGRPHEVVPQVAAETGAARVLLNETVVPTHRESARRMAAAL 127
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGD 179
QG+ + D L P ++ G + + FW+ DP+ L PP+R+ + D
Sbjct: 128 EDQGVEAVTLRPDALVWPSELKTGTGGHYKVYTPFWKALKQAVGDPET-LPPPERLPAPD 186
Query: 180 MSRCPSDTLVFE---DESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
P T + E + L +W+PG A L TFI+G L Y R
Sbjct: 187 --HWPDSTPLAEFRLTPAMPDWAGGLRESWTPGEDGAWACLHTFIDGALARYRTGRNLPA 244
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LSPHL FGE+S R+V++ VR + S + +L IG RE++RY
Sbjct: 245 EVGTSRLSPHLRFGEISARQVWNAVR---------SMAEPNASTDAYLSEIGWREFNRYQ 295
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
F++P H PL + F W D+ +AWR+G TGYP+VDAGMRELW TGW+H+R+R+
Sbjct: 296 LFHNPDLHRTPLRPEFRLFPWREDDADIRAWRKGLTGYPIVDAGMRELWETGWMHNRVRM 355
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+V SF VK L PW+ G +FWDTL+DAD S+ WQ+++G D F R+ NP +G
Sbjct: 356 IVGSFLVKDLLAPWQVGEAWFWDTLVDADWGSNPGNWQWVAGCGADAAPFFRVFNPVLQG 415
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELG-SNYPFPIVRIDAAKC 475
KFDP G+YVRRW+PEL + IH PW AP +EL + YP P+V A+
Sbjct: 416 EKFDPRGDYVRRWVPELREMDRRVIHKPWQAP--------LELARTGYPEPMVDHSHARH 467
Query: 476 R 476
R
Sbjct: 468 R 468
>gi|217421243|ref|ZP_03452748.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 576]
gi|217396655|gb|EEC36672.1| deoxyribodipyrimidine photolyase [Burkholderia pseudomallei 576]
Length = 486
Score = 288 bits (737), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 192/485 (39%), Positives = 269/485 (55%), Gaps = 16/485 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFR DLRV D+PAL +G VI V+++ E G G +RWWL SL L +
Sbjct: 10 AVVWFRDDLRVSDHPALMRAAESGRPVIGVYVF-DERAGGRPLGGAARWWLHGSLRALGA 68
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L +LG +L R D +++ A GA ++++ Y + D+ + AL A+GIA
Sbjct: 69 ALAALGGTLALLRG-DEHDTIVSFAAALGAGAVYWSRRYALAARAVDNAVQTALDARGIA 127
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM----- 180
V +FNA LL+EP D+ +A G+P+ F+A+W + P PL P+R+N G +
Sbjct: 128 VETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGV-PAPPLGAPRRLNGGALPAALA 186
Query: 181 SRCPS-DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+C + D L E + L AW G A + L F++ L Y+ R + A+
Sbjct: 187 RQCVALDALGLEPTGPDWAGGL-RDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIAS 245
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP++ FG +S R+++H A ++ FL +G RE+ +
Sbjct: 246 TSRLSPYVRFGNLSARQLWHAAADAYAH-----GAATQADLDKFLSELGWREFGWTQLHH 300
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P R L L W D AWR+G TGYP VDAGMRELWATGW+H+R+R+V +
Sbjct: 301 FPDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCA 360
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L + WR G +FWDTL+DAD S+A WQ+++G D + RI NP +G KF
Sbjct: 361 SFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKF 420
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP+G YVRRW+PELA LP IH PW AP + L AAG+ LG YP PIV DAA+ R +
Sbjct: 421 DPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAHDAARRRALD 480
Query: 480 ALSEM 484
A +
Sbjct: 481 AFGAI 485
>gi|374576149|ref|ZP_09649245.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. WSM471]
gi|374424470|gb|EHR04003.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. WSM471]
Length = 495
Score = 288 bits (737), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 177/475 (37%), Positives = 257/475 (54%), Gaps = 18/475 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-----VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
IVWFR DLR+ D+PAL A + A VI +++ ++ G +RWWL SL
Sbjct: 20 IVWFRDDLRLSDHPALHAAAKVAAKTGAPVICLYVL--DDAAGRTAGAAARWWLAQSLRA 77
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L + + + G SL+ ++ + + EV + +G +++N + + + + AL
Sbjct: 78 LGADIATRGGSLILRKGP-AARVITEVARESGGRAVYWNGIAQAPHQAVERQLEAALAKL 136
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSG-DMS 181
G+ SF DLL P + + +G+ F FW + L++ DP PL PK + ++
Sbjct: 137 GVDSHSFPGDLLVPPAAIRNKEGRGLRVFTPFWRRVLAL-GDPPKPLPAPKELRPAPGVA 195
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
P DT E + L W+PG ++A L F+ Y +R + D TS
Sbjct: 196 SDPLDTWKLEPGKPDWAGGL-RETWTPGEASARARLRDFLKHTASGYVGDRDRPDREGTS 254
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSPHL FGE+S R+V+H R A N A V+ FL +G RE+ R++ +HP
Sbjct: 255 HLSPHLSFGELSPRQVWHAARF-----AAAENPAIGPGVDKFLSELGWREFCRHLLHDHP 309
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
L + F W D AW++GRTGYP+VDAG+RELW TG +H+R+R+VV+SF
Sbjct: 310 NLATENLQANFDGFPWKPDAKALAAWQRGRTGYPIVDAGLRELWHTGVMHNRVRMVVASF 369
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L + WR G +FWDTL+DAD S+ WQ+++G D + R+ NP +G KFDP
Sbjct: 370 LVKHLLIDWRDGESWFWDTLVDADAGSNPANWQWVAGCGADAAPYFRVFNPVLQGEKFDP 429
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
+G YVRRW+PEL +P + IH PW A L +AG+ LG +YP PIV D AK R
Sbjct: 430 DGAYVRRWVPELRDVPAKLIHQPWRATPIELASAGVTLGKSYPQPIV--DHAKGR 482
>gi|121601607|ref|YP_993682.1| deoxyribodipyrimidine photolyase [Burkholderia mallei SAVP1]
gi|126448880|ref|YP_001081232.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10247]
gi|238562973|ref|ZP_00439583.2| deoxyribodipyrimidine photolyase [Burkholderia mallei GB8 horse 4]
gi|254178225|ref|ZP_04884880.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 10399]
gi|254199318|ref|ZP_04905684.1| deoxyribodipyrimidine photolyase [Burkholderia mallei FMH]
gi|254205631|ref|ZP_04911983.1| deoxyribodipyrimidine photolyase [Burkholderia mallei JHU]
gi|121230417|gb|ABM52935.1| deoxyribodipyrimidine photolyase [Burkholderia mallei SAVP1]
gi|126241750|gb|ABO04843.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10247]
gi|147748914|gb|EDK55988.1| deoxyribodipyrimidine photolyase [Burkholderia mallei FMH]
gi|147753074|gb|EDK60139.1| deoxyribodipyrimidine photolyase [Burkholderia mallei JHU]
gi|160699264|gb|EDP89234.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 10399]
gi|238521576|gb|EEP85026.1| deoxyribodipyrimidine photolyase [Burkholderia mallei GB8 horse 4]
Length = 486
Score = 288 bits (736), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 192/485 (39%), Positives = 268/485 (55%), Gaps = 16/485 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWF DLRV D+PAL +G VI V+++ E G G +RWWL SL L +
Sbjct: 10 AVVWFCDDLRVSDHPALMRAAESGRPVIGVYVF-DERAGGRPLGGAARWWLHGSLRALGA 68
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L +LG +L R D +++ A GA ++++ Y + D+ + AL AQGIA
Sbjct: 69 ALAALGGTLALLRG-DEHDTIVSFAAALGAGAVYWSRRYALAARAVDNAVQTALDAQGIA 127
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM----- 180
V +FNA LL+EP D+ +A G+P+ F+A+W + P PL P+R+N G +
Sbjct: 128 VETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGV-PAPPLGAPRRLNGGALPAALA 186
Query: 181 SRCPS-DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+C + D L E + L AW G A + L F++ L Y+ R + A+
Sbjct: 187 RQCVALDALGLEPTGPDWAGGL-RDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIAS 245
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP++ FG +S R+++H A ++ FL +G RE+ +
Sbjct: 246 TSRLSPYVRFGNLSARQLWHAAADAYAH-----GAATQADLDKFLSELGWREFGWTQLHH 300
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P R L L W D AWR+G TGYP VDAGMRELWATGW+H+R+R+V +
Sbjct: 301 FPDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCA 360
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L + WR G +FWDTL+DAD S+A WQ+++G D + RI NP +G KF
Sbjct: 361 SFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKF 420
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP+G YVRRW+PELA LP IH PW AP + L AAG+ LG YP PIV DAA+ R +
Sbjct: 421 DPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAYDAARRRALD 480
Query: 480 ALSEM 484
A +
Sbjct: 481 AFGAI 485
>gi|124383478|ref|YP_001028857.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10229]
gi|254357787|ref|ZP_04974060.1| deoxyribodipyrimidine photolyase [Burkholderia mallei 2002721280]
gi|124291498|gb|ABN00767.1| deoxyribodipyrimidine photolyase [Burkholderia mallei NCTC 10229]
gi|148026914|gb|EDK84935.1| deoxyribodipyrimidine photolyase [Burkholderia mallei 2002721280]
Length = 534
Score = 288 bits (736), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 192/485 (39%), Positives = 268/485 (55%), Gaps = 16/485 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWF DLRV D+PAL +G VI V+++ E G G +RWWL SL L +
Sbjct: 58 AVVWFCDDLRVSDHPALMRAAESGRPVIGVYVF-DERAGGRPLGGAARWWLHGSLRALGA 116
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L +LG +L R D +++ A GA ++++ Y + D+ + AL AQGIA
Sbjct: 117 ALAALGGTLALLRG-DEHDTIVSFAAALGAGAVYWSRRYALAARAVDNAVQTALDAQGIA 175
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM----- 180
V +FNA LL+EP D+ +A G+P+ F+A+W + P PL P+R+N G +
Sbjct: 176 VETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGV-PAPPLGAPRRLNGGALPAALA 234
Query: 181 SRCPS-DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+C + D L E + L AW G A + L F++ L Y+ R + A+
Sbjct: 235 RQCVALDALGLEPTGPDWAGGL-RDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIAS 293
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP++ FG +S R+++H A ++ FL +G RE+ +
Sbjct: 294 TSRLSPYVRFGNLSARQLWHAAADAYAH-----GAATQADLDKFLSELGWREFGWTQLHH 348
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P R L L W D AWR+G TGYP VDAGMRELWATGW+H+R+R+V +
Sbjct: 349 FPDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCA 408
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L + WR G +FWDTL+DAD S+A WQ+++G D + RI NP +G KF
Sbjct: 409 SFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKF 468
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP+G YVRRW+PELA LP IH PW AP + L AAG+ LG YP PIV DAA+ R +
Sbjct: 469 DPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAYDAARRRALD 528
Query: 480 ALSEM 484
A +
Sbjct: 529 AFGAI 533
>gi|388457015|ref|ZP_10139310.1| deoxyribodipyrimidine photolyase [Fluoribacter dumoffii Tex-KL]
Length = 469
Score = 287 bits (735), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 165/473 (34%), Positives = 249/473 (52%), Gaps = 19/473 (4%)
Query: 6 CSIVWFRRDLRVEDNPA-LAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
++VWFR DLR+ DNPA + A VI ++I+ + G WWL HSL+ L
Sbjct: 3 VALVWFRYDLRLNDNPAFIEACSHHQFVIPLYIYDGKNS---VSGEAQDWWLHHSLTSLS 59
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
SL LG +L+ R D + ++VK + +++N Y+P ++ RD + K AL +GI
Sbjct: 60 ESLAQLGLNLIL-RKGDPFEIISDLVKKLSVSSVYWNRCYEPAAISRDKKIKAALLERGI 118
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V+S N LL+EPW + + G F F +W+ C + L + S
Sbjct: 119 EVQSSNGSLLHEPWTIKNKNGDYFKVFTPYWKHCKQHLNIQPSMYLENRPAGIEVQSEVL 178
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
D + A + W+PG + A + L FI L +Y KNR TS LS
Sbjct: 179 KDWKLL---PAINWAAQFSEYWTPGEAGAQQKLHEFIEHHLNDYKKNRDFPIKNATSRLS 235
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGD-ESVNLFLKSIGLREYSRYMSFNHPYS 303
PHLHFGE+S + + + ++ N D S + FL +G RE+S Y+ ++ P
Sbjct: 236 PHLHFGEISPWTILRAIELAKL------NPNCDLSSADHFLSELGWREFSVYLLYHFPKL 289
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
F W D+ W+ G TGYP++DAGMRELWATG++H+R+R++V+SF
Sbjct: 290 PYENFRSEFDAFPWHNDKELLARWQNGLTGYPIIDAGMRELWATGYMHNRVRMIVASFLT 349
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WR G +F DTL+DADL +++ WQ+++G D + RI NP + KFDP+G
Sbjct: 350 KGLLIDWRLGADWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDPDG 409
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
Y+R W+ EL+ L +++IH PW + +S I L ++YP PI+ A+ R
Sbjct: 410 HYIRHWVSELSHLQSQYIHAPWESADS----ERIYLTTHYPKPIINHHEARTR 458
>gi|53725670|ref|YP_102418.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 23344]
gi|52429093|gb|AAU49686.1| deoxyribodipyrimidine photolyase [Burkholderia mallei ATCC 23344]
Length = 497
Score = 287 bits (734), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 192/485 (39%), Positives = 268/485 (55%), Gaps = 16/485 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWF DLRV D+PAL +G VI V+++ E G G +RWWL SL L +
Sbjct: 21 AVVWFCDDLRVSDHPALMRAAESGRPVIGVYVF-DERAGGRPLGGAARWWLHGSLRALGA 79
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L +LG +L R D +++ A GA ++++ Y + D+ + AL AQGIA
Sbjct: 80 ALAALGGTLALLRG-DEHDTIVSFAAALGAGAVYWSRRYALAARAVDNAVQTALDAQGIA 138
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM----- 180
V +FNA LL+EP D+ +A G+P+ F+A+W + P PL P+R+N G +
Sbjct: 139 VETFNASLLFEPGDLVNADGRPYQVFSAYWRAAMRRGV-PAPPLGAPRRLNGGALPAALA 197
Query: 181 SRCPS-DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+C + D L E + L AW G A + L F++ L Y+ R + A+
Sbjct: 198 RQCVALDALGLEPTGPDWAGGL-RDAWRFGEDAAHRRLRAFVDSRLGGYAAERDRPGIAS 256
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP++ FG +S R+++H A ++ FL +G RE+ +
Sbjct: 257 TSRLSPYVRFGNLSARQLWHAAADAYAH-----GAATQADLDKFLSELGWREFGWTQLHH 311
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P R L L W D AWR+G TGYP VDAGMRELWATGW+H+R+R+V +
Sbjct: 312 FPDLPRRNLRHTLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNRVRMVCA 371
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L + WR G +FWDTL+DAD S+A WQ+++G D + RI NP +G KF
Sbjct: 372 SFLVKHLLIDWRAGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGRKF 431
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP+G YVRRW+PELA LP IH PW AP + L AAG+ LG YP PIV DAA+ R +
Sbjct: 432 DPDGAYVRRWVPELAGLPPATIHEPWAAPGAQLAAAGVRLGETYPLPIVAYDAARRRALD 491
Query: 480 ALSEM 484
A +
Sbjct: 492 AFGAI 496
>gi|357417378|ref|YP_004930398.1| deoxyribodipyrimidine photo-lyase [Pseudoxanthomonas spadix BD-a59]
gi|355334956|gb|AER56357.1| Deoxyribodipyrimidine photo-lyase [Pseudoxanthomonas spadix BD-a59]
Length = 471
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 168/453 (37%), Positives = 251/453 (55%), Gaps = 25/453 (5%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
++VWFR DLR+ DNPAL A + AG + V+I AP EEG + PG S W SL LD
Sbjct: 3 IALVWFRSDLRLADNPALHAALEAGFDPVPVYIHAPHEEGRWAPGAASNAWRHRSLKALD 62
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+LR G+ L+ +R DS L ++++ + A LF+N Y+P + RD K+AL + +
Sbjct: 63 LALRQRGSRLLVRRG-DSAMVLQQLIEQSRAQALFWNRKYEPATQPRDAAIKQALKQRHV 121
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS------MPFDPDA-PLLPPKRINS 177
VRS NA LL EPWDV G+P+ F AF+ ++ + P+A P +P
Sbjct: 122 QVRSCNAALLAEPWDVQTRTGEPYKVFTAFYRNVMAGLAQRALQDAPEALPAVPSALKGE 181
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
G + + L + +A W G + A +AL F+ G L Y R D
Sbjct: 182 GIDALGLAPALNW--------DAGFWEIWQAGEAGAHQALEVFVEGALRGYLDQRDLPDR 233
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
TS LSPHLHFGE++ +V + R++ A G D ++ F++ + RE++ ++
Sbjct: 234 IGTSRLSPHLHFGEIAPWRV--IARLQ----AQRGVSL-DRDIDGFIRQLVWREFAHHLL 286
Query: 298 FNHPYSHERPLLGHLKFFSWV-VDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
+ P++ ++ L F W G +AW+ GRTG P+VDAGMRELW TG +H+R+R+
Sbjct: 287 HHFPHTAQQNLNPRFDRFDWASTAPGPLQAWQHGRTGVPIVDAGMRELWQTGMMHNRVRM 346
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+V+S+ K L++ W G ++FW TL+DADL ++ LGWQ+++GT D + R+ NP +
Sbjct: 347 IVASYLTKHLRVHWLEGARWFWQTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQA 406
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPE 449
KFDP Y+ RW+PEL LP PW P+
Sbjct: 407 RKFDPQARYITRWVPELEALPVNARFAPWEFPQ 439
>gi|298291394|ref|YP_003693333.1| deoxyribodipyrimidine photo-lyase [Starkeya novella DSM 506]
gi|296927905|gb|ADH88714.1| Deoxyribodipyrimidine photo-lyase [Starkeya novella DSM 506]
Length = 479
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 172/471 (36%), Positives = 250/471 (53%), Gaps = 25/471 (5%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFR DLR+ DNPAL A R+G ++ +++ E EG G +RWWL +L+ +
Sbjct: 6 ALVWFRDDLRLADNPALHAAQRSGRPLVLLYLLDEESEGIRPLGGAARWWLGRALASVTE 65
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVV----KATGATQLFFNHLYDPLSLVRDHRAKEALTA 121
++ + G L+ +R EVV A +++N Y + D K L
Sbjct: 66 AIEAKGGQLILRRGKAG-----EVVPAVAAEAKAGAIYWNRRYGAAEIAVDAALKTELAQ 120
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSG-DM 180
+G+ V SFN LL+EPW V G PF F F+ + P R+ S
Sbjct: 121 KGLMVESFNGSLLHEPWTVKTQSGGPFKVFGPFYRNAAQHD------IRRPARVGSHWHF 174
Query: 181 SRCPSDTLVFEDESEKGS---NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
+ P+ + + + E + L +W PG AL F++G L Y+ R + D
Sbjct: 175 AETPAGDELRDWKLEPTTPDWAGGLRESWIPGEDGGRAALAAFVDGGLRSYAAGRDRPDM 234
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
TS LSP+L FG +S ++V VR A+ G G + V F+ + RE+S ++
Sbjct: 235 EHTSRLSPYLRFGHLSPQQVLAAVRHA----ADAGEVRGTD-VEKFVSELYWREFSYHLL 289
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
F+ P + F W D +AW++G TGYPL+DAGMR+LW TGW+H+R+R+V
Sbjct: 290 FHFPDLAQVNFNRRFDGFEWNQDAKIERAWQRGLTGYPLIDAGMRQLWQTGWMHNRVRMV 349
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
+SF +K + WR G +FWDTL+DAD ++A WQ+++G+ D + RI NP +G
Sbjct: 350 AASFLIKHALVDWRRGEVWFWDTLVDADPANNAASWQWVAGSGADAAPYFRIFNPVTQGE 409
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
KFDP+G YVRR++PELA LP IH PW AP VL AG+ LG YP PIV
Sbjct: 410 KFDPDGAYVRRFVPELAGLPDTSIHKPWQAPPQVLAQAGVRLGETYPHPIV 460
>gi|167570597|ref|ZP_02363471.1| deoxyribodipyrimidine photolyase [Burkholderia oklahomensis C6786]
Length = 486
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 189/481 (39%), Positives = 262/481 (54%), Gaps = 16/481 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFR DLRV D+PAL +G VI +++ E G G +RWWL SL LD+
Sbjct: 10 AVVWFRDDLRVSDHPALVRAAESGRPVIGAYVF-DECAGGRPLGGAARWWLHGSLRALDA 68
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L +LG+ LV S D ++ A GA +++N Y D+ + AL A+GI
Sbjct: 69 ALAALGSRLVLL-SGDEADTITSFAAALGAGAVYWNRRYALAQRAVDNTVQTALEARGID 127
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM----- 180
V +FNA LL+EP D+ G+P+ F A+W + APL P+R+ ++
Sbjct: 128 VETFNASLLFEPGDLVTDSGRPYQVFTAYWRAAMRRGVHA-APLAAPRRLKGCELPPRLA 186
Query: 181 -SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+ D L + L W+ G A + L F++ L Y+ R + +A+
Sbjct: 187 QRQVELDALGLAPARPDWAGGLR-ETWTCGEDAAHRRLRAFVDSRLGGYATGRDRPGAAS 245
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP + FG +SVR+V+H A+ A ++ F + +G RE+ +
Sbjct: 246 TSRLSPFVRFGNLSVRQVWHAAVD-----AHAHGAATQADLDTFCRELGWREFCYGQLYR 300
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P R L +L W D AWR+G TGYP VDAGMRELWATGW+H+R R+V +
Sbjct: 301 FPDLARRNLRHNLDGMPWRDDPAALAAWRRGATGYPFVDAGMRELWATGWMHNRARMVCA 360
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L + WR G +FWDTL+DAD S+A WQ+++G D + RI NP +G KF
Sbjct: 361 SFLVKHLLIDWREGDAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPIAQGKKF 420
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP+G YVRRW+PELA LP IH PW AP + L AAG+ LG YP PIV DAA+ R +
Sbjct: 421 DPDGAYVRRWVPELAGLPANAIHEPWAAPAARLAAAGVRLGDTYPLPIVAHDAARKRALD 480
Query: 480 A 480
A
Sbjct: 481 A 481
>gi|107028642|ref|YP_625737.1| deoxyribodipyrimidine photolyase [Burkholderia cenocepacia AU 1054]
gi|116690199|ref|YP_835822.1| deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia HI2424]
gi|105897806|gb|ABF80764.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia cenocepacia
AU 1054]
gi|116648288|gb|ABK08929.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia cenocepacia
HI2424]
Length = 519
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 180/472 (38%), Positives = 245/472 (51%), Gaps = 19/472 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFR DLRV D PAL V +G ++ VF+ G +RWWL SL+ LD+
Sbjct: 37 AIVWFRDDLRVTDQPALTRAVESGRPLVCVFVDDTGAGAGPALGGAARWWLHGSLAGLDA 96
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L L+ R D+ + VV TGA +++N Y D K +L A+G+
Sbjct: 97 ALARHDGRLLLLRG-DAQREIERVVGDTGAAAVYWNRRYAQPQRDADAALKASLKARGVT 155
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
V S N LL EPW+V G P+ F A+W + APL P+RI P
Sbjct: 156 VESSNGSLLNEPWEVLTGSGGPYQVFTAYW-RAARRDRTVAAPLPAPERIA---FHPWPQ 211
Query: 186 DTLVFEDESEKGSNALLARAWSPG----WSNADKA-----LTTFINGPLIEYSKNRRKAD 236
+ + A W+ G W D+A L TF+ L Y+ R + D
Sbjct: 212 AVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGALARLDTFLTTSLAGYADARDRPD 271
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LSP L FG VS R+V+H V+ AN G + FL +G RE+S +
Sbjct: 272 RPATSRLSPFLRFGNVSPRQVWHAVQGA----ANAGGAVYAAHADKFLSELGWREFSYTL 327
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
++ P W D +AW++GRTGYPLVDAG+RELW TGW+H+R+R+
Sbjct: 328 LYHFPALATDNFRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMHNRVRM 387
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
VV+SF +K L + WR G +F DTL+DAD ++A WQ+++G D + RI NP +G
Sbjct: 388 VVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFRIFNPVAQG 447
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
K DP+G YVRRW+PELA L IH PW A L+AAG+ LG +YP P+V
Sbjct: 448 QKCDPDGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGVRLGIDYPAPLV 499
>gi|160334812|gb|ABX24814.1| cryptochrome 1 [Capsella rubella]
Length = 155
Score = 286 bits (732), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 143/154 (92%), Positives = 148/154 (96%)
Query: 323 YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 382
YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL
Sbjct: 2 YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 61
Query: 383 DADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIH 442
DADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVRRWLPEL+RLPT+WIH
Sbjct: 62 DADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIH 121
Query: 443 HPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
HPWNAPESVLQAAGIELGSNYP PIV +D AK R
Sbjct: 122 HPWNAPESVLQAAGIELGSNYPRPIVXLDEAKAR 155
>gi|383787192|ref|YP_005471761.1| deoxyribodipyrimidine photolyase [Fervidobacterium pennivorans DSM
9078]
gi|383110039|gb|AFG35642.1| deoxyribodipyrimidine photolyase [Fervidobacterium pennivorans DSM
9078]
Length = 446
Score = 286 bits (732), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 158/438 (36%), Positives = 242/438 (55%), Gaps = 11/438 (2%)
Query: 49 GRVSRWWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLS 108
G +WWL SL L SL+SLG L+ ++ DS S L ++ A +++N +DPL+
Sbjct: 13 GGAKKWWLHKSLLSLIESLKSLGVKLIIRKGKDSSSVLKSLISEVHADSVYWNKRFDPLA 72
Query: 109 LVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAP 168
RD K+ L + GI V F+ LL+ P A G+P+ F FW+K AP
Sbjct: 73 KSRDENIKKELISSGINVECFDGFLLHNPNSFFTADGKPYGVFTPFWKK-FQNEIVVSAP 131
Query: 169 LLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEY 228
L P+R+ + + A + WS +A K L FI+ L Y
Sbjct: 132 LPVPERLQGVEFDVHLERLEDLNLLPKIKWYAEMENFWSVSEQDAQKRLNWFISHALDGY 191
Query: 229 SKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIG 288
+NR + D TS +SP+L G +S R+++H V + + +EG +A FL+ +
Sbjct: 192 GENRDRPDLDGTSLMSPYLASGLISPRQIWHSVVNSKKNGVSEGAEA-------FLRELA 244
Query: 289 LREYSRYMSFNHPYSHERPLLGHLKFFSWVVD--EGYFKAWRQGRTGYPLVDAGMRELWA 346
RE+S ++ +++P L F W D + Y K W +G TG P++DAGMR+LW
Sbjct: 245 WREFSYHVLYHNPDMVNANLKKEFDAFPWRWDKTDDYVK-WTKGLTGIPIIDAGMRQLWK 303
Query: 347 TGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAF 406
TGW+H+R+R++V+S+ K L + W+ G ++FWDTL+DAD+ ++ GWQ+ +G D +
Sbjct: 304 TGWMHNRVRMIVASWLTKNLLIHWKIGEEWFWDTLVDADIANNVQGWQWTAGCGADAAPY 363
Query: 407 DRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFP 466
RI NP + KFDP G Y+R+W+PELA+LP E+IH PWNAP +L+ G+ELG +YP P
Sbjct: 364 FRIFNPVLQSKKFDPKGMYIRKWVPELAKLPDEYIHEPWNAPVYLLKMIGLELGKDYPLP 423
Query: 467 IVRIDAAKCRLDEALSEM 484
+ I+ + R EA ++
Sbjct: 424 MASIEETRKRALEAFEKI 441
>gi|118497711|ref|YP_898761.1| deoxyribodipyrimidine photolyase [Francisella novicida U112]
gi|194323683|ref|ZP_03057459.1| deoxyribodipyrimidine photolyase family protein [Francisella
novicida FTE]
gi|208779776|ref|ZP_03247120.1| deoxyribodipyrimidine photolyase family protein [Francisella
novicida FTG]
gi|118423617|gb|ABK90007.1| deoxyribodipyrimidine photolyase [Francisella novicida U112]
gi|194322047|gb|EDX19529.1| deoxyribodipyrimidine photolyase family protein [Francisella
tularensis subsp. novicida FTE]
gi|208744231|gb|EDZ90531.1| deoxyribodipyrimidine photolyase family protein [Francisella
novicida FTG]
Length = 464
Score = 286 bits (731), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 163/480 (33%), Positives = 257/480 (53%), Gaps = 32/480 (6%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
+ +I WFR+DLR+ DNPAL +A I +FI ++ G S+ WL HSL+
Sbjct: 2 SKKIAIHWFRQDLRLADNPALYQASQADETITIFILDKNQD----IGSASKLWLHHSLNS 57
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L+SSL + + S + + + +++K T ++N YD S+ RD + K+ L
Sbjct: 58 LNSSL----DNKLNFYSGNPLEIIKKIIKENNITDFYWNRCYDKYSIDRDTQIKQFLQQH 113
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSM------PFDPDAPLLPPKRIN 176
I V SFN LL EPW G + + F+++ + + P+ L +++N
Sbjct: 114 KINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPNFSYL--RKLN 171
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
+ + D+L + N + + W G S + + L F+N + EY R
Sbjct: 172 NSE----NLDSLKLLEPKHSWQNII--KQWQIGESASHQILEEFLNNKVKEYKTARDFMS 225
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
+ +TS LSP+LHFGE+S ++F+ V+ NE + F+K + R++S Y
Sbjct: 226 TDSTSKLSPYLHFGEISPSQIFNAVQSLDYIGNNEEH---------FIKELVWRDFSYYQ 276
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
+ +P H + + F W D K W++G+TG P+VDAGMRELW TG++H+R+R+
Sbjct: 277 IYYYPELHNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQTGYMHNRVRM 336
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+V+SF +K + W++G K+F+DTL DAD S+ WQ+++G D + RI NP +
Sbjct: 337 IVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQA 396
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KF+ EY+R+++PEL LP + I PW A E VLQ AGI LG NYP PIV + ++ R
Sbjct: 397 EKFEA-YEYIRKYVPELKLLPNKLIAKPWEASELVLQEAGITLGQNYPKPIVDLKKSRDR 455
>gi|160334784|gb|ABX24800.1| cryptochrome 1 [Capsella rubella]
gi|160334786|gb|ABX24801.1| cryptochrome 1 [Capsella rubella]
gi|160334788|gb|ABX24802.1| cryptochrome 1 [Capsella rubella]
gi|160334790|gb|ABX24803.1| cryptochrome 1 [Capsella rubella]
gi|160334792|gb|ABX24804.1| cryptochrome 1 [Capsella rubella]
gi|160334794|gb|ABX24805.1| cryptochrome 1 [Capsella rubella]
gi|160334796|gb|ABX24806.1| cryptochrome 1 [Capsella rubella]
gi|160334798|gb|ABX24807.1| cryptochrome 1 [Capsella rubella]
gi|160334800|gb|ABX24808.1| cryptochrome 1 [Capsella rubella]
gi|160334802|gb|ABX24809.1| cryptochrome 1 [Capsella rubella]
gi|160334804|gb|ABX24810.1| cryptochrome 1 [Capsella rubella]
gi|160334806|gb|ABX24811.1| cryptochrome 1 [Capsella rubella]
gi|160334808|gb|ABX24812.1| cryptochrome 1 [Capsella rubella]
gi|160334810|gb|ABX24813.1| cryptochrome 1 [Capsella rubella]
gi|160334814|gb|ABX24815.1| cryptochrome 1 [Capsella rubella]
gi|160334816|gb|ABX24816.1| cryptochrome 1 [Capsella rubella]
gi|160334818|gb|ABX24817.1| cryptochrome 1 [Capsella rubella]
gi|160334820|gb|ABX24818.1| cryptochrome 1 [Capsella rubella]
gi|160334822|gb|ABX24819.1| cryptochrome 1 [Capsella rubella]
gi|160334824|gb|ABX24820.1| cryptochrome 1 [Capsella rubella]
gi|160334826|gb|ABX24821.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334830|gb|ABX24823.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334832|gb|ABX24824.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334834|gb|ABX24825.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334836|gb|ABX24826.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334838|gb|ABX24827.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334840|gb|ABX24828.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334842|gb|ABX24829.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334844|gb|ABX24830.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334848|gb|ABX24832.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334850|gb|ABX24833.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334852|gb|ABX24834.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334854|gb|ABX24835.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334858|gb|ABX24837.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334860|gb|ABX24838.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334864|gb|ABX24840.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334866|gb|ABX24841.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334868|gb|ABX24842.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334870|gb|ABX24843.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334872|gb|ABX24844.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334874|gb|ABX24845.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334876|gb|ABX24846.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334878|gb|ABX24847.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334880|gb|ABX24848.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334882|gb|ABX24849.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334884|gb|ABX24850.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334886|gb|ABX24851.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334888|gb|ABX24852.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334890|gb|ABX24853.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334892|gb|ABX24854.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334894|gb|ABX24855.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334896|gb|ABX24856.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334898|gb|ABX24857.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334900|gb|ABX24858.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334902|gb|ABX24859.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334904|gb|ABX24860.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334906|gb|ABX24861.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334908|gb|ABX24862.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334918|gb|ABX24867.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334922|gb|ABX24869.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334924|gb|ABX24870.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334926|gb|ABX24871.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334928|gb|ABX24872.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334930|gb|ABX24873.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334932|gb|ABX24874.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334934|gb|ABX24875.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334936|gb|ABX24876.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334938|gb|ABX24877.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334940|gb|ABX24878.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334942|gb|ABX24879.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334944|gb|ABX24880.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334946|gb|ABX24881.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334948|gb|ABX24882.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334950|gb|ABX24883.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334952|gb|ABX24884.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334954|gb|ABX24885.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334956|gb|ABX24886.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334958|gb|ABX24887.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334960|gb|ABX24888.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334962|gb|ABX24889.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334964|gb|ABX24890.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334966|gb|ABX24891.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334968|gb|ABX24892.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334970|gb|ABX24893.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334972|gb|ABX24894.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334974|gb|ABX24895.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334976|gb|ABX24896.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334978|gb|ABX24897.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334980|gb|ABX24898.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334982|gb|ABX24899.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334984|gb|ABX24900.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334986|gb|ABX24901.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334988|gb|ABX24902.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334990|gb|ABX24903.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334992|gb|ABX24904.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334994|gb|ABX24905.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334996|gb|ABX24906.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334998|gb|ABX24907.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335000|gb|ABX24908.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335002|gb|ABX24909.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335004|gb|ABX24910.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335006|gb|ABX24911.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160335008|gb|ABX24912.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|260765935|gb|ACX49998.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|260765943|gb|ACX50002.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|260765947|gb|ACX50004.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|260765949|gb|ACX50005.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|260765951|gb|ACX50006.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|341606525|gb|AEK83365.1| At4G08920-like protein [Capsella grandiflora]
gi|341606527|gb|AEK83366.1| At4G08920-like protein [Capsella grandiflora]
gi|341606529|gb|AEK83367.1| At4G08920-like protein [Capsella grandiflora]
gi|341606531|gb|AEK83368.1| At4G08920-like protein [Capsella grandiflora]
gi|341606533|gb|AEK83369.1| At4G08920-like protein [Capsella grandiflora]
gi|341606535|gb|AEK83370.1| At4G08920-like protein [Capsella grandiflora]
gi|341606537|gb|AEK83371.1| At4G08920-like protein [Capsella grandiflora]
gi|341606539|gb|AEK83372.1| At4G08920-like protein [Capsella grandiflora]
gi|341606545|gb|AEK83375.1| At4G08920-like protein [Capsella grandiflora]
gi|341606547|gb|AEK83376.1| At4G08920-like protein [Capsella grandiflora]
gi|341606549|gb|AEK83377.1| At4G08920-like protein [Capsella grandiflora]
gi|341606551|gb|AEK83378.1| At4G08920-like protein [Capsella grandiflora]
gi|341606553|gb|AEK83379.1| At4G08920-like protein [Capsella grandiflora]
gi|341606555|gb|AEK83380.1| At4G08920-like protein [Capsella grandiflora]
gi|341606557|gb|AEK83381.1| At4G08920-like protein [Capsella grandiflora]
gi|341606559|gb|AEK83382.1| At4G08920-like protein [Capsella grandiflora]
gi|341606561|gb|AEK83383.1| At4G08920-like protein [Capsella grandiflora]
gi|341606563|gb|AEK83384.1| At4G08920-like protein [Capsella grandiflora]
gi|341606565|gb|AEK83385.1| At4G08920-like protein [Capsella grandiflora]
gi|341606567|gb|AEK83386.1| At4G08920-like protein [Capsella grandiflora]
gi|341606569|gb|AEK83387.1| At4G08920-like protein [Capsella grandiflora]
gi|341606571|gb|AEK83388.1| At4G08920-like protein [Capsella grandiflora]
gi|341606573|gb|AEK83389.1| At4G08920-like protein [Capsella grandiflora]
gi|341606575|gb|AEK83390.1| At4G08920-like protein [Capsella grandiflora]
gi|341606577|gb|AEK83391.1| At4G08920-like protein [Capsella grandiflora]
gi|341606579|gb|AEK83392.1| At4G08920-like protein [Capsella grandiflora]
gi|341606581|gb|AEK83393.1| At4G08920-like protein [Capsella grandiflora]
gi|341606583|gb|AEK83394.1| At4G08920-like protein [Capsella grandiflora]
gi|341606585|gb|AEK83395.1| At4G08920-like protein [Capsella grandiflora]
gi|341606587|gb|AEK83396.1| At4G08920-like protein [Capsella grandiflora]
gi|341606589|gb|AEK83397.1| At4G08920-like protein [Capsella grandiflora]
gi|341606591|gb|AEK83398.1| At4G08920-like protein [Capsella grandiflora]
gi|341606593|gb|AEK83399.1| At4G08920-like protein [Capsella grandiflora]
gi|341606595|gb|AEK83400.1| At4G08920-like protein [Capsella grandiflora]
gi|341606597|gb|AEK83401.1| At4G08920-like protein [Capsella grandiflora]
gi|341606599|gb|AEK83402.1| At4G08920-like protein [Capsella grandiflora]
gi|341606601|gb|AEK83403.1| At4G08920-like protein [Capsella grandiflora]
gi|341606603|gb|AEK83404.1| At4G08920-like protein [Capsella grandiflora]
gi|341606605|gb|AEK83405.1| At4G08920-like protein [Capsella grandiflora]
gi|341606607|gb|AEK83406.1| At4G08920-like protein [Capsella grandiflora]
gi|341606609|gb|AEK83407.1| At4G08920-like protein [Capsella grandiflora]
gi|341606611|gb|AEK83408.1| At4G08920-like protein [Capsella grandiflora]
gi|341606613|gb|AEK83409.1| At4G08920-like protein [Capsella grandiflora]
gi|341606615|gb|AEK83410.1| At4G08920-like protein [Capsella grandiflora]
gi|341606617|gb|AEK83411.1| At4G08920-like protein [Capsella grandiflora]
gi|341606619|gb|AEK83412.1| At4G08920-like protein [Capsella grandiflora]
gi|341606621|gb|AEK83413.1| At4G08920-like protein [Capsella grandiflora]
gi|341606623|gb|AEK83414.1| At4G08920-like protein [Capsella grandiflora]
gi|341606625|gb|AEK83415.1| At4G08920-like protein [Capsella grandiflora]
gi|341606627|gb|AEK83416.1| At4G08920-like protein [Capsella grandiflora]
gi|341606629|gb|AEK83417.1| At4G08920-like protein [Capsella grandiflora]
gi|341606631|gb|AEK83418.1| At4G08920-like protein [Capsella grandiflora]
gi|341606633|gb|AEK83419.1| At4G08920-like protein [Capsella grandiflora]
gi|341606635|gb|AEK83420.1| At4G08920-like protein [Capsella grandiflora]
gi|341606637|gb|AEK83421.1| At4G08920-like protein [Capsella grandiflora]
gi|341606639|gb|AEK83422.1| At4G08920-like protein [Capsella grandiflora]
gi|341606641|gb|AEK83423.1| At4G08920-like protein [Capsella grandiflora]
gi|341606643|gb|AEK83424.1| At4G08920-like protein [Capsella grandiflora]
gi|341606645|gb|AEK83425.1| At4G08920-like protein [Capsella grandiflora]
gi|341606647|gb|AEK83426.1| At4G08920-like protein [Capsella grandiflora]
gi|341606649|gb|AEK83427.1| At4G08920-like protein [Capsella grandiflora]
gi|341606651|gb|AEK83428.1| At4G08920-like protein [Capsella grandiflora]
gi|341606653|gb|AEK83429.1| At4G08920-like protein [Capsella grandiflora]
gi|341606655|gb|AEK83430.1| At4G08920-like protein [Capsella grandiflora]
gi|341606657|gb|AEK83431.1| At4G08920-like protein [Capsella grandiflora]
gi|341606659|gb|AEK83432.1| At4G08920-like protein [Capsella grandiflora]
gi|341606661|gb|AEK83433.1| At4G08920-like protein [Capsella grandiflora]
gi|341606663|gb|AEK83434.1| At4G08920-like protein [Capsella grandiflora]
gi|341606665|gb|AEK83435.1| At4G08920-like protein [Capsella grandiflora]
gi|397136696|gb|AFO11856.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136698|gb|AFO11857.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136700|gb|AFO11858.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136702|gb|AFO11859.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136704|gb|AFO11860.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136706|gb|AFO11861.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136708|gb|AFO11862.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136710|gb|AFO11863.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136712|gb|AFO11864.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136714|gb|AFO11865.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136716|gb|AFO11866.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136718|gb|AFO11867.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136720|gb|AFO11868.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136722|gb|AFO11869.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136724|gb|AFO11870.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136726|gb|AFO11871.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136728|gb|AFO11872.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136730|gb|AFO11873.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136732|gb|AFO11874.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136734|gb|AFO11875.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136736|gb|AFO11876.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136738|gb|AFO11877.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136740|gb|AFO11878.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136742|gb|AFO11879.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136744|gb|AFO11880.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136746|gb|AFO11881.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136748|gb|AFO11882.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136750|gb|AFO11883.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136752|gb|AFO11884.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136754|gb|AFO11885.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136756|gb|AFO11886.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136758|gb|AFO11887.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136760|gb|AFO11888.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136762|gb|AFO11889.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136764|gb|AFO11890.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136766|gb|AFO11891.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136768|gb|AFO11892.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136770|gb|AFO11893.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136772|gb|AFO11894.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136774|gb|AFO11895.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136776|gb|AFO11896.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136778|gb|AFO11897.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136780|gb|AFO11898.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136782|gb|AFO11899.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136784|gb|AFO11900.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136786|gb|AFO11901.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136788|gb|AFO11902.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136790|gb|AFO11903.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136792|gb|AFO11904.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136794|gb|AFO11905.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136796|gb|AFO11906.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136798|gb|AFO11907.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136800|gb|AFO11908.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136802|gb|AFO11909.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136804|gb|AFO11910.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136806|gb|AFO11911.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136808|gb|AFO11912.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136810|gb|AFO11913.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136812|gb|AFO11914.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136814|gb|AFO11915.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136816|gb|AFO11916.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136818|gb|AFO11917.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136820|gb|AFO11918.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136822|gb|AFO11919.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136824|gb|AFO11920.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136826|gb|AFO11921.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136828|gb|AFO11922.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136830|gb|AFO11923.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136832|gb|AFO11924.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136834|gb|AFO11925.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136836|gb|AFO11926.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136840|gb|AFO11928.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136842|gb|AFO11929.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136844|gb|AFO11930.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136846|gb|AFO11931.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136848|gb|AFO11932.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136850|gb|AFO11933.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136852|gb|AFO11934.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136854|gb|AFO11935.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136856|gb|AFO11936.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136858|gb|AFO11937.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136860|gb|AFO11938.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136862|gb|AFO11939.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136864|gb|AFO11940.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136866|gb|AFO11941.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136868|gb|AFO11942.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136870|gb|AFO11943.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136872|gb|AFO11944.1| CRY1, partial [Capsella bursa-pastoris]
gi|397136874|gb|AFO11945.1| CRY1, partial [Capsella rubella]
gi|397136876|gb|AFO11946.1| CRY1, partial [Capsella rubella]
gi|397136878|gb|AFO11947.1| CRY1, partial [Capsella rubella]
gi|397136880|gb|AFO11948.1| CRY1, partial [Capsella rubella]
gi|397136882|gb|AFO11949.1| CRY1, partial [Capsella rubella]
gi|397136884|gb|AFO11950.1| CRY1, partial [Capsella rubella]
gi|397136886|gb|AFO11951.1| CRY1, partial [Capsella rubella]
gi|397136888|gb|AFO11952.1| CRY1, partial [Capsella rubella]
gi|397136890|gb|AFO11953.1| CRY1, partial [Capsella rubella]
gi|397136892|gb|AFO11954.1| CRY1, partial [Capsella rubella]
gi|397136894|gb|AFO11955.1| CRY1, partial [Capsella rubella]
gi|397136896|gb|AFO11956.1| CRY1, partial [Capsella rubella]
gi|397136898|gb|AFO11957.1| CRY1, partial [Capsella rubella]
gi|397136900|gb|AFO11958.1| CRY1, partial [Capsella rubella]
gi|397136902|gb|AFO11959.1| CRY1, partial [Capsella rubella]
gi|397136904|gb|AFO11960.1| CRY1, partial [Capsella rubella]
gi|397136906|gb|AFO11961.1| CRY1, partial [Capsella rubella]
gi|397136908|gb|AFO11962.1| CRY1, partial [Capsella rubella]
gi|397136910|gb|AFO11963.1| CRY1, partial [Capsella rubella]
gi|397136912|gb|AFO11964.1| CRY1, partial [Capsella rubella]
gi|397136914|gb|AFO11965.1| CRY1, partial [Capsella rubella]
Length = 155
Score = 285 bits (730), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 143/154 (92%), Positives = 148/154 (96%)
Query: 323 YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 382
YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL
Sbjct: 2 YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 61
Query: 383 DADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIH 442
DADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVRRWLPEL+RLPT+WIH
Sbjct: 62 DADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIH 121
Query: 443 HPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
HPWNAPESVLQAAGIELGSNYP PIV +D AK R
Sbjct: 122 HPWNAPESVLQAAGIELGSNYPRPIVGLDEAKAR 155
>gi|359778384|ref|ZP_09281653.1| deoxyribodipyrimidine photo-lyase [Arthrobacter globiformis NBRC
12137]
gi|359304301|dbj|GAB15482.1| deoxyribodipyrimidine photo-lyase [Arthrobacter globiformis NBRC
12137]
Length = 474
Score = 285 bits (730), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 179/489 (36%), Positives = 251/489 (51%), Gaps = 30/489 (6%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRA-GAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
+IVW R DLR++DNPALAA V V+I G G +RWWL HSLS L
Sbjct: 3 STIVWLRDDLRLDDNPALAAAAALPDPVTVVYILDEHSPGIRPLGAAARWWLHHSLSALG 62
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+SL + G+ L+ +R + S++ E+ TGA +LF+N Y D KE QGI
Sbjct: 63 ASLEARGSRLLLRRGA-AASAIEELAAETGAGRLFWNRRYGQPERSIDAGVKEWAAGQGI 121
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS-----MPFDPDAPLLPPKRINSGD 179
SF A+LL+EPW V G P+ F FW CL+ +P DP L P SG
Sbjct: 122 EATSFQANLLFEPWTVRTGSGGPYKVFTPFWRTCLAGAEPRLPADPPDHLPQPAAGTSGR 181
Query: 180 ---MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
R S L+ G LA AW+PG A + L F++GP+ +Y K R
Sbjct: 182 PPAGDRLDSWRLLPRRPDWSGG---LAAAWTPGEDGAHERLEDFLDGPVEDYGKGRDLPG 238
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LSPHL FGE+S +V+H +R + + V +F +G RE+ +
Sbjct: 239 VEGTSRLSPHLRFGEISPFRVWHSLR-------EQFPRHAPADVGIFRSELGWREFCWQL 291
Query: 297 SFNHPYSHERPLLGHLKFFSWVV-DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+ +P + F+W + +AW+QGRTGYPLVDAGMR+LW TGW+H+R+R
Sbjct: 292 LYENPDLATQNYRREFDHFAWQTPSDAELEAWQQGRTGYPLVDAGMRQLWQTGWMHNRVR 351
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
+ +SF VK + WR G +FWDTL+DAD ++ WQ+++G+ D + RI NP +
Sbjct: 352 MAAASFLVKNMLADWRVGEAWFWDTLVDADAANNPANWQWVAGSGADASPYFRIFNPVTQ 411
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
KFD G Y+R ++PELA L +H PW P + YP P+V + ++
Sbjct: 412 SKKFDAGGSYLRGYVPELADLDDRTVHEPWKNPSAA---------PGYPEPLVGLQESRE 462
Query: 476 RLDEALSEM 484
R E +
Sbjct: 463 RALETYQRL 471
>gi|440731048|ref|ZP_20911095.1| deoxyribodipyrimidine photo-lyase, photolyase [Xanthomonas
translucens DAR61454]
gi|440375449|gb|ELQ12158.1| deoxyribodipyrimidine photo-lyase, photolyase [Xanthomonas
translucens DAR61454]
Length = 473
Score = 285 bits (730), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 162/456 (35%), Positives = 260/456 (57%), Gaps = 21/456 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAV-IAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFRRDLR+ D+PAL A + AG + V++ +P +EG + G S WL+ +L+ LD+
Sbjct: 4 AIVWFRRDLRLHDHPALHAALAAGHTPVPVYVHSPGDEGAWSAGAASLSWLQRALAALDA 63
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L++ G+ L+ R + + L E+++A GA +++N Y+P + RD + K L QG+
Sbjct: 64 QLQARGSRLIL-RQGPAETVLRELIQACGAVAVYWNRRYEPATQPRDAKLKRELREQGLD 122
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
V S+N+ LL+EPW + QG P+ F FW LS +P R + P
Sbjct: 123 VHSYNSALLFEPWQLATQQGGPYKVFTPFWRSALSHW------QVPALRPAPKTLPPPPP 176
Query: 186 DTLVFEDESEKGSNAL-----LARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
+ + AL W PG + A +AL F++G L Y + R + D T
Sbjct: 177 ALPSLPLQQLGLAPALGWDRGFWEVWQPGEAGAHEALEVFVDGALRGYVEGRDRPDQVGT 236
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSPHLHFGE++ ++ + ++ + A +++ +++ +G R+++ ++ +
Sbjct: 237 SRLSPHLHFGEIAPWRIVAALEKQR-------SAATGAAIDGYIRQLGWRDFAHHLLHHF 289
Query: 301 PYSHERPLLGHLKFFSWVV-DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P + E L F W D +AW++GRTG P+VDAG+RELW TGW+H+R+R++V+
Sbjct: 290 PATPEHNLNPRFARFRWATPDPAQLQAWQRGRTGVPIVDAGLRELWHTGWMHNRVRMIVA 349
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
S+ K L++ W G ++FWDTL+DADL ++ LGWQ+++GT D + R+ NP + KF
Sbjct: 350 SYLCKHLRVHWSEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAQKF 409
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAA 455
DP G Y+ RW+PELA LP PW +P+ + +A
Sbjct: 410 DPQGRYIARWVPELAALPVAERFAPWLSPQRLATSA 445
>gi|341606541|gb|AEK83373.1| At4G08920-like protein [Capsella grandiflora]
Length = 155
Score = 285 bits (729), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 143/154 (92%), Positives = 148/154 (96%)
Query: 323 YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 382
YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL
Sbjct: 2 YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 61
Query: 383 DADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIH 442
DADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVRRWLPEL+RLPT+WIH
Sbjct: 62 DADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIH 121
Query: 443 HPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
HPWNAPESVLQAAGIELGSNYP PIV +D AK R
Sbjct: 122 HPWNAPESVLQAAGIELGSNYPRPIVGLDEAKXR 155
>gi|95929775|ref|ZP_01312516.1| Deoxyribodipyrimidine photolyase [Desulfuromonas acetoxidans DSM
684]
gi|95134071|gb|EAT15729.1| Deoxyribodipyrimidine photolyase [Desulfuromonas acetoxidans DSM
684]
Length = 475
Score = 285 bits (728), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 173/483 (35%), Positives = 246/483 (50%), Gaps = 23/483 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
I+WFR+DLR+ DNPAL R G VI ++I E G SR WL SL L+ L
Sbjct: 10 IMWFRQDLRLHDNPALLTATRLGPVIPIYILDDEHAADQRMGAASRCWLHRSLDALNQQL 69
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
G + + D++ L ++V+ + +N Y+P + RD KE L GI V
Sbjct: 70 D--GHLQLFRGPADTL--LEQLVQHYDCRTVTWNRCYEPWRINRDRIIKEKLQGLGITVH 125
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCL-SMPFDPDAPLLPPKRINSGDMSRCPSD 186
S N LL+EPW V P+ F F+ S+P +PL P I ++ P
Sbjct: 126 SDNGSLLWEPWQVLKRDQTPYQIFTPFYRHARDSVPVR--SPLPRPAEIALAAVT--PYS 181
Query: 187 TLVFEDESEKGSNALLARA---WSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
L D + ++ + W PG + A + TF+ L+ Y + R S L
Sbjct: 182 ALKLADLELRPNHPWADKVLHHWQPGEAGAQQRWQTFMEEELLGYGEGRDLPAQPHVSRL 241
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SP +H+GE+SV +++H + G E F + + RE+S F+HP
Sbjct: 242 SPAIHWGEISVHQLWH-----------DAQAIGHEDALAFQRQLAWREFSVTQLFHHPDM 290
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
L F W D W+QG TG P VDAGMRELW TG +H+R+R+VV SF V
Sbjct: 291 DRINLDRRFNLFPWHDDAEKLNRWQQGLTGIPFVDAGMRELWQTGTMHNRVRMVVGSFLV 350
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + W G +FWD LLDADL +++ WQ+I+G D + RI NP +G KFDP+G
Sbjct: 351 KNLGIHWHHGAAWFWDCLLDADLANNSASWQWIAGCGADAAPYFRIFNPVTQGQKFDPHG 410
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSE 483
+Y R ++PELA+LP ++ PW AP+ +LQ GI LG YP P+V I ++ + +A +
Sbjct: 411 DYTRHFVPELAKLPNRYLFCPWQAPKGLLQECGITLGGTYPEPMVDIKVSRQQALDAYAH 470
Query: 484 MWQ 486
M Q
Sbjct: 471 MRQ 473
>gi|171319558|ref|ZP_02908656.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MEX-5]
gi|171095203|gb|EDT40197.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MEX-5]
Length = 500
Score = 285 bits (728), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 186/492 (37%), Positives = 259/492 (52%), Gaps = 13/492 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFR DLRV D PAL V +G ++ V++ E G +RWWL SL+ LD+
Sbjct: 10 AVVWFRDDLRVTDQPALMRAVASGRPLVCVYVDDTGEGAGRALGGAARWWLHGSLATLDA 69
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L G L+ R D+ + VV TGA +++N Y D K +L A G+
Sbjct: 70 ALARHGGRLLLLRG-DARREIERVVHDTGAAAVYWNRRYAQPQRDADAALKASLKAHGLE 128
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRIN-----SGDM 180
V S N LL EPW+V G PF F A+W + + APL P+RI +G
Sbjct: 129 VESSNGSLLNEPWEVMTGAGTPFQVFTAYW-RAVRRDRTVAAPLPAPERIAFHPWPAGVR 187
Query: 181 SRCPS-DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
R + DTL + + L +P + A L F++ L Y+ R +
Sbjct: 188 ERALALDTLALRPHAPDWAGGLRDAWPAPDEAGAHARLDAFVHASLAGYADTRDRPGEPA 247
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP L FG VS R+V+H V+ + ++ FL +G RE+S + ++
Sbjct: 248 TSRLSPFLRFGNVSPRQVWHAVQGVAQAGGAACAAGAEK----FLSELGWREFSHVLLYH 303
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P W D +AW++G TGYPLVDAGMRELW TGW+H+R+R+VV+
Sbjct: 304 FPALATDNFRAQFDAIPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTGWMHNRVRMVVA 363
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L + WR G ++F DTL+DAD ++ WQ+++G D + RI NP +G KF
Sbjct: 364 SFLVKHLLIDWRAGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFRIFNPVAQGRKF 423
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP G YVRRW+PELA L IH PW A + L AAG+ LG +YP PIV D A+ R +
Sbjct: 424 DPQGAYVRRWVPELAGLDAAAIHAPWEASAAQLAAAGVRLGLDYPAPIVDHDGARRRALD 483
Query: 480 ALSEMWQQEAAS 491
AL+ + + AA
Sbjct: 484 ALATLPKPSAAG 495
>gi|424793391|ref|ZP_18219508.1| Putative photolyase [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|422796635|gb|EKU25108.1| Putative photolyase [Xanthomonas translucens pv. graminis
ART-Xtg29]
Length = 473
Score = 285 bits (728), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 165/456 (36%), Positives = 256/456 (56%), Gaps = 21/456 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAV-IAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFRRDLR+ D+PAL A + AG + V++ +P +EG + G S WL+ +L+ LD+
Sbjct: 4 AIVWFRRDLRLHDHPALHAALAAGHTPVPVYVHSPGDEGAWAAGAASLSWLQRALAALDA 63
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L++ G+ L+ R + + L E++ GA +++N Y+P + RD R K L AQG+
Sbjct: 64 QLQARGSRLIL-RQGPAETVLRELIAECGAVAVYWNRRYEPATQPRDARLKRELRAQGLE 122
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
V S+N LL+EPW + QG P+ F FW LS P+L R + P
Sbjct: 123 VHSYNGALLFEPWQLATQQGGPYKVFTPFWRSALS---HWQVPVL---RPAPKTLPPPPP 176
Query: 186 DTLVFEDESEKGSNAL-----LARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
+ + AL W PG + A +AL F++G L Y R + D T
Sbjct: 177 ALPSLPLQQLGLAPALGWDRGFWDVWQPGEAGAHEALEVFVDGALRGYVAGRDRPDQIGT 236
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSPHLHFGE++ ++ + N + A +++ +++ +G R+++ ++ +
Sbjct: 237 SRLSPHLHFGEIAPWRIVAALE-------NARSAATGAAIDGYIRQLGWRDFAHHLLHHF 289
Query: 301 PYSHERPLLGHLKFFSWVV-DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P + E L F W D +AW++GRTG P+VDAG+RELW TGW+H+R+R++V+
Sbjct: 290 PATPEHNLNPRFARFRWATPDPAQLQAWQRGRTGVPIVDAGLRELWHTGWMHNRVRMIVA 349
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
S+ K L++ W G ++FWDTL+DADL ++ LGWQ+++GT D + R+ NP + KF
Sbjct: 350 SYLCKHLRVHWSEGARWFWDTLVDADLANNTLGWQWVAGTGADAAPYFRVFNPVTQAQKF 409
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAA 455
DP G Y+ RW+PELA LP PW P+ + +A
Sbjct: 410 DPQGRYIARWVPELAALPVAERFAPWLTPQRLATSA 445
>gi|409400169|ref|ZP_11250320.1| deoxyribodipyrimidine photo-lyase [Acidocella sp. MX-AZ02]
gi|409130775|gb|EKN00515.1| deoxyribodipyrimidine photo-lyase [Acidocella sp. MX-AZ02]
Length = 467
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 172/472 (36%), Positives = 243/472 (51%), Gaps = 37/472 (7%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
++VWFR DLR+ DNPAL A AG VI ++I G SRWWL HSLS L +
Sbjct: 3 NLVWFRNDLRLADNPALHAAAAAGDVILLYILDERAGG------ASRWWLHHSLSALGAE 56
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
+ + G LV +R D+ + +VKA + Y+P D AL +
Sbjct: 57 IAARGGRLVLRRG-DATEIITGLVKAHKVAAVHVARAYEPAWREADRALDAALKRLDCGL 115
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKC---------LSMPFDPDAPLLPPKRINS 177
+ L+ P + G + + F + C L +P + LL PK I S
Sbjct: 116 HRHLSTSLFHPERITTKAGGMYGVYTPFSKACQEAGVPETLLPVP----SALLGPK-IES 170
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
D++ L + G A W+PG + A L F+ GP+ +Y+ R
Sbjct: 171 EDLADW--GLLPIRPDWAGGMRA----EWTPGEAGAKARLEAFLAGPVQDYATARDIPGR 224
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
TS LSPH HFGE+S R V+H R E V FLK + RE+S +
Sbjct: 225 HGTSKLSPHAHFGEISPRYVWHRAR----------AAGAGEGVETFLKELLWREFSINLL 274
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
+ HP P+ K F W + AW+ G+TG P+VDAGMRELW TGW+H+R+R++
Sbjct: 275 WQHPDLRREPIRREFKDFPWETNRDRLTAWQTGKTGIPIVDAGMRELWITGWMHNRVRMI 334
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
+S+ VK L +PW+ G +FWDTL +AD ++ WQ+++G D + R+ NP +G
Sbjct: 335 CASYLVKHLLIPWQAGEAWFWDTLCEADEAANGASWQWVAGCGADAAPYFRVFNPVLQGQ 394
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVR 469
KFD +G YVRR+LP L RLP ++IH PW AP +L A G++LGSNYP P+V+
Sbjct: 395 KFDGDGAYVRRFLPALKRLPDKYIHAPWEAPPEILAACGVKLGSNYPQPLVK 446
>gi|167646881|ref|YP_001684544.1| deoxyribodipyrimidine photo-lyase [Caulobacter sp. K31]
gi|167349311|gb|ABZ72046.1| Deoxyribodipyrimidine photo-lyase [Caulobacter sp. K31]
Length = 478
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 196/483 (40%), Positives = 260/483 (53%), Gaps = 25/483 (5%)
Query: 5 GCSIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHL 63
G IVW R DLR+ DNPAL A G VI ++I E G G S WWL SL+ L
Sbjct: 7 GPIIVWLRNDLRLADNPALIAAAATGRPVIPLYI-LDETPGVRPMGDASLWWLDKSLAAL 65
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
D++LR+ G+ L+ +R + + L EVV A + +N LYD S+ RD K L +G
Sbjct: 66 DAALRATGSRLILRRGP-ARAVLEEVVADAEAAAVVWNRLYDAASIERDSALKAWLKDEG 124
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
+A SFNA LL EPW V + GQP+ F +W D + P + +
Sbjct: 125 VACESFNAGLLNEPWTVKNGSGQPYKVFTPYWRAARDQLH--DVHVEPAPKTLAAPAHWP 182
Query: 184 PSDTLVFEDESEKGSNALLARA-----WSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
D L E ALL + W+PG + A L F++GP+ +Y R
Sbjct: 183 HGDAL----EDWTLHPALLDWSTGFDLWTPGEAGALARLDDFLSGPVQDYGHKRDFPGVE 238
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LSPHLHFGE+ R+V+ R + A V FL IG RE++ + F
Sbjct: 239 ATSRLSPHLHFGEIGPRQVWAAARHAAEA-----GDAPAGQVEKFLSEIGWREFNHSILF 293
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
++P F WV + F+AW +G+TGYP+VDAGMRELWATG++H+R+R++V
Sbjct: 294 HNPDLPHTSFRPEFDGFPWVKNPAAFEAWSRGQTGYPIVDAGMRELWATGFMHNRVRMIV 353
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L + WR G +FWDTL+DADL S+ WQ+++G D + RI NP +G K
Sbjct: 354 ASFLVKHLLIDWREGEAWFWDTLVDADLASNVGNWQWVAGGGADAAPYFRIFNPIAQGQK 413
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNA-PESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
FDP G YVRRW+PELA+LP IH PW A P+ AA I YP PIV AA+ R
Sbjct: 414 FDPAGAYVRRWVPELAKLPDALIHEPWKASPDPGAAAARI-----YPEPIVGHPAARERA 468
Query: 478 DEA 480
EA
Sbjct: 469 LEA 471
>gi|190891474|ref|YP_001978016.1| deoxyribodipyrimidine photo-lyase [Rhizobium etli CIAT 652]
gi|190696753|gb|ACE90838.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CIAT 652]
Length = 482
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 174/477 (36%), Positives = 258/477 (54%), Gaps = 24/477 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I+WFR+DLR++DN AL A +G +I+++I PE G G WWL HSL LD S
Sbjct: 10 ILWFRKDLRLDDNKALNAAHFSGRPIISLYIREPEAAGTGPLGAAQSWWLHHSLEALDGS 69
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
LR L+ S +++ L +++ + A +F+N YDP + D + L Q I V
Sbjct: 70 LRKRRGGLLLA-SGEALGVLRSLIRQSDADAVFWNRRYDPPGISIDAHIEHELEKQAIEV 128
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP-S 185
+SF LL+EP + G P+ + FW + L +P+ PL P ++ S+ P S
Sbjct: 129 KSFGGQLLHEPSQLMTGSGTPYRVYTPFW-RALERSIEPE-PLDIPSKLQLA--SKLPGS 184
Query: 186 DTL----VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
+ L + + + SN A W+PG A + L TFI L Y +NR TS
Sbjct: 185 EKLESWKLLSTQPDWASN--FADLWTPGEEGAQEKLRTFIEDRLDGYKENRDYPAKPATS 242
Query: 242 FLSPHLHFGEVSVRKVFHLVR--IKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
LSPHL GE+S +++ R K + A+ + F K I R++S ++ +
Sbjct: 243 MLSPHLALGEISPARIWDATRGLSKHLPAAD---------IVHFRKEIAWRDFSYHLLAH 293
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P F W E F AW +G TGYP+VDAGMR+LW GW+H+R+R++ +
Sbjct: 294 FPRLATANWDDRFDRFEWGSAEEDFNAWSRGMTGYPIVDAGMRQLWRYGWMHNRVRMIAA 353
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF +K L + WR G +F DTL+DAD ++A WQ+++G+ D F R+ NP +G KF
Sbjct: 354 SFLIKDLMVDWRHGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRVFNPVLQGEKF 413
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
DP+G++VR +PEL +L ++IH P+ AP+SVL AA + LG YP P+V A+ R
Sbjct: 414 DPDGDFVRSHVPELRKLDAKYIHRPFEAPKSVLDAADVILGETYPEPVVDHAGARKR 470
>gi|160334828|gb|ABX24822.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334846|gb|ABX24831.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334856|gb|ABX24836.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334862|gb|ABX24839.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334910|gb|ABX24863.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334912|gb|ABX24864.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334914|gb|ABX24865.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334916|gb|ABX24866.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|160334920|gb|ABX24868.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|260765937|gb|ACX49999.1| cryptochrome 1 [Capsella bursa-pastoris]
gi|260765939|gb|ACX50000.1| cryptochrome 1 [Capsella bursa-pastoris]
Length = 155
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 142/154 (92%), Positives = 147/154 (95%)
Query: 323 YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 382
YFK WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL
Sbjct: 2 YFKGWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 61
Query: 383 DADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIH 442
DADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVRRWLPEL+RLPT+WIH
Sbjct: 62 DADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIH 121
Query: 443 HPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
HPWNAPESVLQAAGIELGSNYP PIV +D AK R
Sbjct: 122 HPWNAPESVLQAAGIELGSNYPRPIVGLDEAKAR 155
>gi|414342179|ref|YP_006983700.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans H24]
gi|411027514|gb|AFW00769.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans H24]
Length = 502
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 176/479 (36%), Positives = 251/479 (52%), Gaps = 27/479 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
IVWFR DLR D+PAL A G +I V++ E + G SRWWL +LS L S+
Sbjct: 33 IVWFREDLRFSDHPALQAATATGHPLICVYVLDDETPALHALGGASRWWLHGALSDLRST 92
Query: 67 L-RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L R GT L K S + + + ++ K T A ++++H +D + AL QG++
Sbjct: 93 LSRHHGTLLTLKGSAEKL--IPQLAKETDAQGVYWHHRLHQKEREQDEQIASALDKQGVS 150
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS----MPFDPDAPL----LPPKRINS 177
+ +L +P V +G+ + F AFW+ S +P DP A L LP ++
Sbjct: 151 SEASWGTVLLDPTQVQTKEGRFYQVFTAFWKAFQSQDVPVPLDPPAHLSFHPLPDDLLSK 210
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
R TL+ + A L W PG A + L F+ Y K R +
Sbjct: 211 ---YRLDETTLL---PTHPDWAAGLRATWEPGEREAHEHLEDFLRHDCARYGKGRDEMGR 264
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
TS LSP+L G +S R+V+ ++ K A DE +FL IG RE+++Y
Sbjct: 265 EGTSRLSPYLASGAISPRQVWEAIQKK---------GAHDEGARIFLSEIGWREFAKYTL 315
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
F+ P + L W E AW+QGRTG P+VDAGMR+LW TGW+H+R R++
Sbjct: 316 FHQPRLPDVSLGQKFGKMPWRKSEQDLTAWQQGRTGVPVVDAGMRQLWKTGWMHNRARMI 375
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V SF K L + WR G +F DTL+DAD S+A+ WQ+++GT D F RI NP +G
Sbjct: 376 VGSFLTKHLLIDWRQGEAWFRDTLVDADWASNAMNWQWVAGTGIDASPFFRIFNPTRQGV 435
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFDP+G+Y+R+W+PEL +L + + PWNA E L+ AG+ G YP PIV + + R
Sbjct: 436 KFDPDGDYIRQWVPELKKLSGKDLFEPWNAKEEDLERAGVTFGKTYPRPIVDLKEGRDR 494
>gi|260765945|gb|ACX50003.1| cryptochrome 1 [Capsella bursa-pastoris]
Length = 155
Score = 284 bits (726), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 142/154 (92%), Positives = 147/154 (95%)
Query: 323 YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 382
YFK WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL
Sbjct: 2 YFKXWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 61
Query: 383 DADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIH 442
DADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVRRWLPEL+RLPT+WIH
Sbjct: 62 DADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIH 121
Query: 443 HPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
HPWNAPESVLQAAGIELGSNYP PIV +D AK R
Sbjct: 122 HPWNAPESVLQAAGIELGSNYPRPIVGLDEAKAR 155
>gi|347760850|ref|YP_004868411.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter xylinus NBRC
3288]
gi|347579820|dbj|BAK84041.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter xylinus NBRC
3288]
Length = 466
Score = 283 bits (725), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 175/489 (35%), Positives = 241/489 (49%), Gaps = 47/489 (9%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
M R +++WFR DLR+ DNPAL G VI +++ P + G RWWL +L
Sbjct: 1 MPDRAPTVMWFRDDLRLADNPALTDAATQGPVICLYVHDPA----FALGAAERWWLHDAL 56
Query: 61 SHLDSSLRSLGTSL-VTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
+ LD LR+ G L + + S +V L + GAT + +N Y + D K AL
Sbjct: 57 TALDHDLRARGGQLCIMEGSAQAVVQWL--AQQAGATAVVWNRRYGGPARQVDTDIKTAL 114
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS-- 177
GI RS ++L+EPW V QG PF + +W +M +APL PP + +
Sbjct: 115 KVMGIDARSHPGNMLHEPWQVRTRQGTPFRVYTPWWRAVQAM----EAPL-PPVSVPASL 169
Query: 178 ---------GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEY 228
G+ PS + + L W PG L +F+ + Y
Sbjct: 170 TFASLPPAVGEQQLAPSALRLLPTRPDWAQG--LRDTWQPGEQAGQARLDSFVAKRMAGY 227
Query: 229 SKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIG 288
++ R TS LSP+L FG VS R+V+H V K DE FL +G
Sbjct: 228 ARQRDLPARPATSALSPYLRFGHVSSRQVWHAV---------AAGKEMDEDGACFLSEVG 278
Query: 289 LREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATG 348
R+++ F P R L W D +AW+QGRTGYP+VDAGMRELW TG
Sbjct: 279 WRDFAHATLFEFPEMATRSLRPEYDRMPWRTDPAALQAWQQGRTGYPIVDAGMRELWHTG 338
Query: 349 WLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDR 408
W+H+R+R++V+SF K L L WR G ++F DTL+DAD S+ WQ+++G D + R
Sbjct: 339 WMHNRVRMIVASFLTKHLLLDWRAGERWFADTLVDADGASNPFNWQWVAGCGLDAAPYFR 398
Query: 409 IDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWN-APESVLQAAGIELGSNYPFPI 467
I NP +G KFDP G+YVRRW+PE+A L +H PW AP YP PI
Sbjct: 399 IFNPVLQGEKFDPAGDYVRRWVPEIAHLTGRDLHTPWKMAPR------------GYPAPI 446
Query: 468 VRIDAAKCR 476
V + A + R
Sbjct: 447 VDLTAGRTR 455
>gi|418939862|ref|ZP_13493247.1| DNA photolyase FAD-binding protein [Rhizobium sp. PDO1-076]
gi|375053424|gb|EHS49818.1| DNA photolyase FAD-binding protein [Rhizobium sp. PDO1-076]
Length = 480
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 173/480 (36%), Positives = 252/480 (52%), Gaps = 16/480 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I+WFR+DLR++DN ALA G VI V+I P E G G WWL HSL+ L S
Sbjct: 8 ILWFRKDLRLDDNAALATAADEGRRVIPVYIREPAEAGTGPLGAAQAWWLHHSLAALARS 67
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L +G+ L T RS + L +++ TGA +++N YDP + D K LT G+ +
Sbjct: 68 LEEIGSRL-TLRSGPAGQVLDQLIDETGAASVYWNRRYDPPGIAIDKAIKARLTEDGLVI 126
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM--SRCP 184
R+F +L+EP + G F + FW K L +P P P +N+ P
Sbjct: 127 RTFAGQILHEPTRLTTGSGTNFRVYTPFW-KALESSGEPREPAPAPASLNAPPSWPDSEP 185
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
D+ ++ A + W PG + A + L TFI L Y R TS LS
Sbjct: 186 LDSWALL-PTKPNWAAEFSEIWQPGEAGALERLDTFIENGLAGYRSLRDFPARPNTSMLS 244
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
PHL GE+S +++H R + E + F K + R++S ++ F+ P
Sbjct: 245 PHLAMGEISPARIWHATR-------GLAGRFASEDIIHFRKEVVWRDFSYHLLFHFPDLK 297
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
+ F W K W++G TGYP+VDAGMR+LW G++H+R+R++ +SF +K
Sbjct: 298 SKNWNSKFDAFPWRSAPDLLKKWQRGETGYPIVDAGMRQLWRHGYMHNRVRMIAASFLIK 357
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L + WR G ++F DTL+DAD S+A WQ+++G+ D F RI NP +G KFD G
Sbjct: 358 DLMIDWREGERWFRDTLVDADPASNAASWQWVAGSGADASPFFRIFNPITQGEKFDVEGH 417
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
Y+R ++PEL +P +IH P+ AP +VL+ AG+ L Y PIV D + R DEAL+ +
Sbjct: 418 YIRTFVPELKAMPDAYIHRPFEAPLTVLKEAGVILDETYAKPIV--DHKQAR-DEALAAL 474
>gi|381394101|ref|ZP_09919819.1| deoxyribodipyrimidine photo-lyase [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379330373|dbj|GAB54952.1| deoxyribodipyrimidine photo-lyase [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 469
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 173/486 (35%), Positives = 256/486 (52%), Gaps = 28/486 (5%)
Query: 9 VWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLR 68
+WFR+DLRV+DNPAL + V+ V+I+ G S+WWL H+L L SL
Sbjct: 1 MWFRQDLRVKDNPALIKAAKQSKVLPVYIYDTSVPQNAVLGGASKWWLHHALVALQESLD 60
Query: 69 SLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRS 128
G LV S D LL + + + +N +Y+P ++ RD K+AL A S
Sbjct: 61 --GNLLVL--SGDPQEILLSLCTQHNISSVHWNRMYEPWAIARDTAIKKALKASECDALS 116
Query: 129 FNADLLYEPWDVNDAQGQPFATFAAFWEK-CLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
N LL+EP V P+ F +++ CL+ P DP P P DM
Sbjct: 117 TNGSLLWEPMQVLKKDETPYKVFTPYYKNGCLNAP-DPRYPQRKPPLSFMDDMDEVKGYQ 175
Query: 188 LVFEDESEKGSNALLARA---------WSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
V S ALL R W+ A L FI + EY+ +R A
Sbjct: 176 GV-------DSLALLPRVNWDLHMQEMWNVSEQGAQCKLEYFIKQAIEEYNDDRNVPSVA 228
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LSP+ HFG +S + ++ V A G++ ++ V ++L +G RE+S Y+ F
Sbjct: 229 GTSQLSPYFHFGLISPNQAWYAVHD-----AFNGSRE-NKGVYVYLSELGWREFSYYLLF 282
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
+ R F WV D+ +AW+QG+TG P+VDAGMREL+ TG++H+R+R++V
Sbjct: 283 HFNDIQNRNFNTKFDNFPWVQDKEGLRAWQQGKTGVPIVDAGMRELYQTGYMHNRVRMIV 342
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+S+ VK L + WR G ++FWD LLDAD S++ GWQ+++G+ D + RI NP +G K
Sbjct: 343 ASYLVKNLLIDWREGERWFWDCLLDADSASNSAGWQWVAGSGADASPYFRIFNPILQGEK 402
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FD G YV+++ PEL++L +++H PW A E L +A I LG +YP PIV + ++ R
Sbjct: 403 FDKEGAYVKKYCPELSKLGKKFLHKPWEASEQELLSANIVLGKDYPKPIVDLKKSRVRAL 462
Query: 479 EALSEM 484
+A +
Sbjct: 463 DAYKTI 468
>gi|341606543|gb|AEK83374.1| At4G08920-like protein [Capsella grandiflora]
gi|397136838|gb|AFO11927.1| CRY1, partial [Capsella bursa-pastoris]
Length = 155
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 142/154 (92%), Positives = 147/154 (95%)
Query: 323 YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 382
YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL
Sbjct: 2 YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL 61
Query: 383 DADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIH 442
DADLESDALGWQYI+GT+PD R FDRIDNP FEGYKFDPNGEYVRRWLPEL+RLPT+WIH
Sbjct: 62 DADLESDALGWQYITGTLPDSREFDRIDNPXFEGYKFDPNGEYVRRWLPELSRLPTDWIH 121
Query: 443 HPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
HPWNAPESVLQAAGIELGSNYP PIV +D AK R
Sbjct: 122 HPWNAPESVLQAAGIELGSNYPRPIVGLDEAKAR 155
>gi|456354652|dbj|BAM89097.1| deoxyribodipyrimidine photo-lyase type I [Agromonas oligotrophica
S58]
Length = 437
Score = 283 bits (724), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 161/423 (38%), Positives = 236/423 (55%), Gaps = 13/423 (3%)
Query: 49 GRVSRWWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLY--DP 106
G +RWWL SL L L +LG LV +R + + + + T A +++N + +P
Sbjct: 5 GGATRWWLAQSLRALQGELHTLGVELVIRRGP-AAKVIGALARETNAGAVYWNDVAQAEP 63
Query: 107 LSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPD 166
++ D + AL A + R F DLL +P ++ +G+ F FW++ L++ DP
Sbjct: 64 RAVAAD--VEVALDAIDVKSRVFADDLLVDPAELRGKEGRGPRVFTPFWKRVLAL-GDPP 120
Query: 167 APLLPPKRINSG-DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPL 225
PL P R++S ++ D L E + L A W G A + L F+ +
Sbjct: 121 KPLPIPARLSSPPGVASLAIDELGLEPTRPDWAGGLRA-TWQAGERAAQERLGKFLETAV 179
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
Y+ +R + D TS +SPHL FGE+S R+++H R A E + A + FL
Sbjct: 180 RSYAADRDRPDIDATSRMSPHLRFGEISPRQIWHAARF-----AAEEHPAFARGIEKFLS 234
Query: 286 SIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELW 345
+G RE+SR++ +N+P R L F W ++ +AW++GRTGYP+VDAGMRELW
Sbjct: 235 ELGWREFSRHLLYNNPDLATRNLQASFDAFPWAQNDAALQAWQRGRTGYPIVDAGMRELW 294
Query: 346 ATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRA 405
TG +H+R+R+V +S VK L + WR G ++FWDTL+DAD S+ WQ+++G+ D
Sbjct: 295 HTGSMHNRVRMVAASLLVKHLLIDWRLGEQWFWDTLVDADPGSNPASWQWVAGSGADAAP 354
Query: 406 FDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPF 465
+ R+ NP +G KFD NG YVRRW+PELARLP IH PW A L AG+ LG +YP
Sbjct: 355 YFRVFNPVLQGEKFDSNGTYVRRWVPELARLPASLIHQPWAAKPLELAEAGVALGRSYPA 414
Query: 466 PIV 468
PIV
Sbjct: 415 PIV 417
>gi|453328412|dbj|GAC89303.1| deoxyribodipyrimidine photolyase [Gluconobacter thailandicus NBRC
3255]
Length = 483
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 177/487 (36%), Positives = 253/487 (51%), Gaps = 27/487 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
IVWFR DLR D+PAL A G +I V++ E + G SRWWL +LS L S+
Sbjct: 14 IVWFREDLRFSDHPALQAATATGHPLICVYVLDDETPALHALGGASRWWLHGALSDLRST 73
Query: 67 L-RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L R GT L K S + + + ++ K T A ++++H +D + AL QG++
Sbjct: 74 LSRHHGTLLTLKGSAEKL--IPQLAKETDAQGVYWHHRLHQKEREQDEQIASALDKQGVS 131
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS----MPFDPDAPL----LPPKRINS 177
+ +L +P V +G+ + F AFW+ S +P DP A L LP ++
Sbjct: 132 SEASWGTVLLDPKQVQTKEGRFYQVFTAFWKAFQSQDVPVPLDPPAHLSFHPLPDDLLSK 191
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
R TL+ + A L W PG A + L F+ Y K R +
Sbjct: 192 ---YRLDETTLL---PTHPDWAAGLRATWEPGEREAHEHLEDFLRHDCARYGKGRDEMGR 245
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
TS LSP+L G +S R+V+ ++ K A DE +FL IG RE+++Y
Sbjct: 246 EGTSRLSPYLASGAISPRQVWEAIQKK---------GAHDEGARIFLSEIGWREFAKYTL 296
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
F+ P + L W E AW+QGRTG P+VDAGMR+LW TGW+H+R R++
Sbjct: 297 FHQPRLPDVSLGQKFGKMPWRKSEQDLTAWQQGRTGVPVVDAGMRQLWKTGWMHNRARMI 356
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V SF K L + WR G +F DTL+DAD S+A+ WQ+++GT D F RI NP +G
Sbjct: 357 VGSFLTKHLLIDWRQGEAWFRDTLVDADWASNAMNWQWVAGTGIDASPFFRIFNPTRQGV 416
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
KFDP+G+Y+R+W+PEL +L + + PWNA E L+ AG+ G YP PIV + + R
Sbjct: 417 KFDPDGDYIRQWVPELKKLSGKDLFEPWNAKEEDLERAGVTFGKTYPRPIVDLKEGRDRA 476
Query: 478 DEALSEM 484
A +
Sbjct: 477 MAAFRSL 483
>gi|418406735|ref|ZP_12980054.1| deoxyribodipyrimidine photo-lyase [Agrobacterium tumefaciens 5A]
gi|358007228|gb|EHJ99551.1| deoxyribodipyrimidine photo-lyase [Agrobacterium tumefaciens 5A]
Length = 479
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 181/494 (36%), Positives = 265/494 (53%), Gaps = 29/494 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGV-RAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
IVWFR+DLR+ DN AL A V G VI ++I GP G WW+ HSL+ L ++
Sbjct: 9 IVWFRKDLRLADNLALLAAVEHGGPVIPLYI-RETSSGPL--GGAQEWWVHHSLASLSAA 65
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L G+ L+ RS ++ +L ++ TGA + +N Y+P + D KEAL G+ V
Sbjct: 66 LEKCGSRLLL-RSGNAEETLRRLIAETGADAVLWNRRYEPTGMATDKTLKEALGDDGLTV 124
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM---SRC 183
RSF LL+EP V G P+ + FW + L +P P P+ + + + S
Sbjct: 125 RSFAGHLLHEPSRVQTKSGGPYRVYTPFW-RALEGGEEPHTPADAPQSLKAPETWPKSEK 183
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
D + + + + W+PG + A + L FI+G L Y + R TS L
Sbjct: 184 LDDWKLLPVKPDWARG--FSEIWTPGENAAREKLDDFIDGALKGYEEGRDFPAKDATSLL 241
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
+PHL GE+S V+H + ++ F K + RE+ ++ F+ P
Sbjct: 242 APHLALGEISPAAVWHATK-------GLSRHIASNDISRFRKELVWREFCYHLLFHFPEL 294
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
E+ F W D+ F AW +G TGYP+VDAGMR+LW G +H+R+R++V+SF +
Sbjct: 295 DEKNWNDSFDAFGWRDDDTSFNAWTRGMTGYPIVDAGMRQLWKHGTMHNRVRMIVASFLI 354
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WR G K+F DTL+DAD S+A WQ+++G+ D F RI NP +G KFD G
Sbjct: 355 KHLLIDWRKGEKWFRDTLVDADPASNAANWQWVAGSGADASPFFRIFNPILQGEKFDAEG 414
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSE 483
+YVRR++PEL +L ++IH P+ AP+ VL+ AGIELG YP PIV D K R
Sbjct: 415 DYVRRFVPELEKLERKYIHKPFEAPKEVLKKAGIELGKTYPLPIV--DHGKAR------- 465
Query: 484 MWQQEAASRAAIEN 497
++ A+ AA++N
Sbjct: 466 --ERALAAYAAVKN 477
>gi|221134512|ref|ZP_03560817.1| DNA photolyase [Glaciecola sp. HTCC2999]
Length = 487
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 173/488 (35%), Positives = 255/488 (52%), Gaps = 28/488 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRA----GAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHL 63
I+WFR DLR+ DNPAL + G V+ +FI G S+WWL SL+ L
Sbjct: 7 IMWFRHDLRLNDNPALYRAIELAGEHGTVLPIFIHDTSAPDLAKLGEASQWWLHQSLASL 66
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
+S G L + D ++ + ++ AT + +N Y+P + RD K L
Sbjct: 67 SAST---GQHLQLFQG-DPLAIIESLINQYDATHVIWNRGYEPWQITRDSHIKATLK-DC 121
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEK-CL--SMPFDPDA--PLLP-PKRINS 177
+ V S N LL+EP V P+ F ++ K CL S P P++ LP RINS
Sbjct: 122 VEVLSCNGHLLWEPMQVLKKDNTPYKVFTPYYRKGCLTRSAPRYPESIPEHLPWATRINS 181
Query: 178 GDMSRCPSDTLVFEDESEKGS---NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRK 234
++ + L ++ S +A W PG A L T+I Y ++R
Sbjct: 182 TNIF----EPLTLDELKLMPSIQWYDTIAAQWQPGEQGAKDRLATYIEEAAGRYREDRNL 237
Query: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSR 294
TS LSPHLHFGE+SV V++ ++ + +E + +L +G RE+S
Sbjct: 238 PAVKGTSLLSPHLHFGEISVNTVWYAIK------DAFKDDPENEHADTYLSELGWREFSH 291
Query: 295 YMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
Y+ F+ P+ F W KAW+ G TG P+VDAGMREL+ TG++H+R+
Sbjct: 292 YLLFHFPHIQTENFSSKFNVFPWRSSPEELKAWQFGNTGIPIVDAGMRELYQTGYMHNRV 351
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R++V SF VK L + WR G ++FWD LLDAD+ +++ WQ+++G+ D + RI NP
Sbjct: 352 RMIVGSFLVKNLLIDWREGERWFWDCLLDADMAANSASWQWVAGSGADASPYFRIFNPIL 411
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
+G KFD G+YV+ + PEL LP ++IH PW AP ++LQA I LG NYP PIV + ++
Sbjct: 412 QGEKFDKQGDYVKHYCPELRLLPPKFIHKPWEAPSNILQACNIVLGHNYPKPIVDLKVSR 471
Query: 475 CRLDEALS 482
R +A +
Sbjct: 472 QRALDAFA 479
>gi|417097726|ref|ZP_11959367.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CNPAF512]
gi|327193153|gb|EGE60063.1| deoxyribodipyrimidine photo-lyase protein [Rhizobium etli CNPAF512]
Length = 482
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 179/479 (37%), Positives = 259/479 (54%), Gaps = 28/479 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I+WFR+DLR++DN AL A +G +I+++I PE G G WWL HSL LD S
Sbjct: 10 ILWFRKDLRLDDNKALNAAHFSGRPIISLYIREPEAAGTGPLGAAQAWWLHHSLEALDGS 69
Query: 67 LRSL--GTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
LR G SL + + + + SL +K + A +F+N YDP + D R + L + I
Sbjct: 70 LRKRRGGLSLASGEALEVLRSL---IKQSDADAVFWNRRYDPPGISIDARIEHELEKRAI 126
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V+SF LL+EP + G P+ + FW + L + + PL P ++ S+ P
Sbjct: 127 EVKSFGGQLLHEPSQLMTGSGTPYRVYTPFW-RALESSIEAE-PLDIPSKLQLA--SKLP 182
Query: 185 -SDTL----VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
S+ L + + + SN A +PG A + L TFI L Y +NR
Sbjct: 183 GSEKLESWKLLSTQPDWASN--FADLCTPGEEGAQEKLRTFIEDRLDGYKENRDYPAKPA 240
Query: 240 TSFLSPHLHFGEVSVRKVFHLVR--IKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
TS LSPHL GE+S +++ R K V A+ + F K I RE+S ++
Sbjct: 241 TSMLSPHLALGEISPARIWDATRGLSKHVPAAD---------IVHFRKEIAWREFSYHLL 291
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
+ P F W E FKAW +G TGYP+VDAGMR+LW GW+H+R+R++
Sbjct: 292 AHFPRLATANWDDRFDGFEWRRAEKDFKAWSRGMTGYPIVDAGMRQLWRYGWMHNRVRMI 351
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
+SF +K L + WR G +F DTL+DAD ++A WQ+++G+ D F RI NP +G
Sbjct: 352 AASFLIKDLMVDWRHGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQGE 411
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFDP+G++VR +PEL +L ++IH P+ AP+SVL AA + LG YP P+V A+ R
Sbjct: 412 KFDPDGDFVRAHVPELRKLDAKYIHRPFEAPKSVLDAADVILGETYPEPVVDHAGARKR 470
>gi|365857119|ref|ZP_09397117.1| putative deoxyribodipyrimidine photo-lyase [Acetobacteraceae
bacterium AT-5844]
gi|363716733|gb|EHM00129.1| putative deoxyribodipyrimidine photo-lyase [Acetobacteraceae
bacterium AT-5844]
Length = 484
Score = 282 bits (722), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 178/467 (38%), Positives = 259/467 (55%), Gaps = 22/467 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
I+WFR DLR+EDN AL A G + V++ E G + G RWWL HSL L +L
Sbjct: 13 ILWFRNDLRLEDNAALHAASE-GKTLPVYVLDDEAAGRWAVGAAGRWWLHHSLKALAEAL 71
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
R L S + + + + ++ + GA + L P + RD +AL A G +
Sbjct: 72 RRL-GSGLLLLRGRAETLIPQLAREIGAAAVHAATLAAPWARQRDAAIAKALQAGGRRLE 130
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
++ L+ P V QG+P++ + F + + DP P+ P+R+ D + P+
Sbjct: 131 LHDSSLV-RPDVVVTGQGKPYSVYTPFARAVMKL-GDPPPPIPAPRRL---DGVKAPTGG 185
Query: 188 LVFED------ESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
+ +D E A + W PG + A L F+N L EY R + +S
Sbjct: 186 ISLDDLALLPRRPEPDWAAGFSSLWQPGEAGARDQLQRFLNDALAEYPDGRNRPGEDGSS 245
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSPHLH+GE+S R+V+H VR ++A + + FLK I RE+S + ++HP
Sbjct: 246 RLSPHLHWGEISARQVWHAVR---------ESEAPASAADTFLKEIIWREFSHNILWHHP 296
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
E PL F + + +AW++GRTGYP+VDAGMR+LW GW+H+R+R++V+S
Sbjct: 297 GLPEAPLRPEYTQFPYNRNIEAQRAWQRGRTGYPIVDAGMRQLWRLGWMHNRVRMIVASL 356
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
FVK L PW+ G +FWDTL+DADL +++ WQ+++G+ D F RI NP +G KFDP
Sbjct: 357 FVKHLLQPWQDGEAWFWDTLVDADLGNNSFNWQWVAGSGADASPFFRIFNPVLQGEKFDP 416
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
GEYVR ++PELA+LP W+H PW AP VL+ AG+ LG YP PIV
Sbjct: 417 KGEYVRTFVPELAQLPDRWLHRPWEAPAEVLREAGVTLGETYPEPIV 463
>gi|27380421|ref|NP_771950.1| DNA photolyase [Bradyrhizobium japonicum USDA 110]
gi|27353585|dbj|BAC50575.1| DNA photolyase [Bradyrhizobium japonicum USDA 110]
Length = 442
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 167/438 (38%), Positives = 238/438 (54%), Gaps = 16/438 (3%)
Query: 48 PGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPL 107
PG +RWWL SL L + + + G SL+ ++ + + E + +GA +++N +
Sbjct: 10 PGGAARWWLAQSLRALGAEIAARGGSLILRKGP-AAGVIPEEARESGARAVYWNGIAQAP 68
Query: 108 SLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDA 167
+ R + AL G+ +SF DLL P + + +G+ F FW + LS+ DP
Sbjct: 69 HQAIERRLEAALAKLGVDSQSFPGDLLVPPSAIRNKEGRGLRVFTPFWRRVLSL-GDPPK 127
Query: 168 PLLPPKRINSGDM---SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGP 224
PL PK++ G R S L G L W+PG ++A L F+
Sbjct: 128 PLPAPKQLRPGPKIVSDRLESWQLAPTKPDWAGG---LRERWTPGEASARARLRDFLKTI 184
Query: 225 LIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFL 284
Y+ +R + D TS LSPHL FGE+S R+V+H R A G + FL
Sbjct: 185 ARGYAGDRDRPDRVGTSGLSPHLRFGELSPRQVWHAARFAAAEDAALG-----PGIEKFL 239
Query: 285 KSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMREL 344
+G RE+ R++ +HP L + F W D AW++GRTGYP+VDAG+REL
Sbjct: 240 SELGWREFCRHLLHDHPDLATENLQTNFDGFPWQSDGKVLAAWQRGRTGYPIVDAGLREL 299
Query: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 404
W TG +H+R+R+VV+SF VK L + WR G +FWDTL+DAD S+ WQ+++G D
Sbjct: 300 WHTGVMHNRVRMVVASFLVKHLLIDWRDGEAWFWDTLVDADAGSNPANWQWVAGCGADAA 359
Query: 405 AFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
+ R+ NPQ +G KFDP+G YVRRW+PEL LP + IH PW A + L +AG+ LG YP
Sbjct: 360 PYFRVFNPQLQGEKFDPDGTYVRRWVPELQGLPAKLIHQPWQATPNELASAGVTLGKTYP 419
Query: 465 FPIVRIDAAKCRLDEALS 482
PIV D A+ R + ALS
Sbjct: 420 QPIV--DHARGR-ERALS 434
>gi|254374529|ref|ZP_04990010.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3548]
gi|385793100|ref|YP_005826076.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|151572248|gb|EDN37902.1| deoxyribodipyrimidine photolyase [Francisella novicida GA99-3548]
gi|332678425|gb|AEE87554.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida Fx1]
Length = 464
Score = 281 bits (720), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 161/480 (33%), Positives = 256/480 (53%), Gaps = 32/480 (6%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
+ +I WFR+DLR+ DNPAL +A I +FI ++ G S+ WL HSL+
Sbjct: 2 SKKIAIHWFRQDLRLADNPALYQASQADETITIFILDKNQD----IGSASKLWLHHSLNS 57
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L+SSL + + S + + + +++K T ++N YD S+ RD + K+ L
Sbjct: 58 LNSSL----DNKLNFYSGNPLEIIKKIIKENNITDFYWNRCYDKYSIDRDTQIKQFLQQH 113
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSM------PFDPDAPLLPPKRIN 176
I V SFN LL EPW G + + F+++ + + P+ L +++N
Sbjct: 114 KINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPNFSYL--RKLN 171
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
+ + D+L N + + W G S + + L F++ + EY R
Sbjct: 172 NSE----NLDSLKLLQPKHSWQNII--KQWQIGESASHQILEEFLDNKVKEYKTARDFMS 225
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
+ +TS LSP+LHFGE+S ++F+ V+ NE + F+K + R++S Y
Sbjct: 226 TDSTSKLSPYLHFGEISPNQIFNAVQSLDYIGNNEEH---------FIKELVWRDFSYYQ 276
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
+ +P H + + F W D K W++G+TG P+VDAGMRELW TG++H+R+R+
Sbjct: 277 IYYYPELHNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQTGYMHNRVRM 336
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+V+SF +K + W++G K+F+DTL DAD S+ WQ+++G D + RI NP +
Sbjct: 337 IVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQA 396
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KF+ EY+R+++PEL LP + I PW A E VL+ AGI LG NYP PIV + ++ R
Sbjct: 397 EKFEA-YEYIRKYVPELKLLPNKLIAKPWEASELVLKEAGITLGQNYPKPIVDLKKSRDR 455
>gi|170733532|ref|YP_001765479.1| deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia MC0-3]
gi|169816774|gb|ACA91357.1| Deoxyribodipyrimidine photo-lyase [Burkholderia cenocepacia MC0-3]
Length = 519
Score = 281 bits (719), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 179/472 (37%), Positives = 244/472 (51%), Gaps = 19/472 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFR DLRV D PAL V +G ++ VF+ G +RWWL SL+ LD+
Sbjct: 37 AIVWFRDDLRVTDQPALTRAVESGRPLVCVFVDDTGAGAGPALGGAARWWLHGSLAGLDA 96
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L G L+ R D+ + VV TGA +++N Y D K +L A+G+
Sbjct: 97 ALARHGGRLLLLRG-DAQREIERVVGDTGAAAVYWNRRYAQQQRDADAALKASLKARGVT 155
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
V S N LL EPW+V G P+ F A+W + APL P+RI P
Sbjct: 156 VESSNGSLLNEPWEVLTGSGGPYQVFTAYW-RAARRDRTVAAPLPAPERIA---FHPWPK 211
Query: 186 DTLVFEDESEKGSNALLARAWSPG----WSNADKA-----LTTFINGPLIEYSKNRRKAD 236
+ + A W+ G W D+A L F+ L Y+ R + D
Sbjct: 212 AVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGALARLDRFLTTSLAGYADARDRPD 271
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LSP L FG VS R+V+H V+ + D+ FL +G RE+S +
Sbjct: 272 RPATSRLSPFLRFGNVSPRQVWHAVQGAANAGGAAYAAHADK----FLSELGWREFSYTL 327
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
++ P W D +AW++GRTGYPLVDAG+RELW TGW+H+R+R+
Sbjct: 328 LYHFPALATDNFRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMHNRVRM 387
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
VV+SF +K L + WR G +F DTL+DAD ++A WQ+++G D + RI NP +G
Sbjct: 388 VVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFRIFNPVAQG 447
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
KFDP G YVRRW+PELA L IH PW A L+AAG+ LG +YP P+V
Sbjct: 448 QKFDPGGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGVRLGVDYPAPLV 499
>gi|296536181|ref|ZP_06898305.1| deoxyribodipyrimidine photo-lyase [Roseomonas cervicalis ATCC
49957]
gi|296263491|gb|EFH09992.1| deoxyribodipyrimidine photo-lyase [Roseomonas cervicalis ATCC
49957]
Length = 477
Score = 281 bits (719), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 175/473 (36%), Positives = 256/473 (54%), Gaps = 18/473 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+++W R+DLR D+PAL A V V+ VF+ +E P+ PG +RWWL HSL L
Sbjct: 8 ALLWLRQDLRTADHPALHA-VAGQPVLPVFVL--DESDPWAPGGAARWWLHHSLKALGEK 64
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L +LG L+ R + + E+ A GA ++ + LY+P + RD +AL QG +
Sbjct: 65 LAALGAPLLLLRGK-AADLIPELADALGAAEVHASRLYEPWARQRDAGIAKALEGQGRRL 123
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR---C 183
+ L EP + QG+P++ + F L++ DP P+ P R+ + R
Sbjct: 124 CLHSGATLLEPHRLRTGQGKPYSVYTPFARAVLAL-GDPPPPIPAPDRLRAAPPPREGLA 182
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
+ E A W+PG A L F Y + R T+ L
Sbjct: 183 LDALDLLPRPPEPDWAAAFPEYWTPGEDGAAARLRDFAAQAAQGYDRGRDLPGEDRTARL 242
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SPHLH+GEVS R+ + V EG K+G +LK I RE++ + ++ P
Sbjct: 243 SPHLHWGEVSPRQAWQAV--------AEGGKSGGHIT--WLKEILWREFAYHTLWHRPEL 292
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
+ PL F W D+ +AW++GRTGYP+VDAG+R+LW GW+H+R+R+VV S V
Sbjct: 293 PDTPLRPEFAEFPWQPDDTLLQAWQRGRTGYPIVDAGLRQLWRHGWMHNRVRMVVGSLLV 352
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L PW+ G +FWDTL+DADL ++++ WQ+++G+ D + RI NP +G KFDP G
Sbjct: 353 KHLLQPWQQGSLWFWDTLVDADLAANSMNWQWVAGSGIDASPYFRIFNPILQGEKFDPEG 412
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
YVR ++PELARLP W+H PW A +L+AAG+ LG +YP PIV + + R
Sbjct: 413 RYVRHFVPELARLPDAWLHKPWQASPEMLRAAGLRLGHDYPAPIVDHEGGRKR 465
>gi|338732806|ref|YP_004671279.1| deoxyribodipyrimidine photo-lyase [Simkania negevensis Z]
gi|336482189|emb|CCB88788.1| deoxyribodipyrimidine photo-lyase [Simkania negevensis Z]
Length = 462
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 157/478 (32%), Positives = 263/478 (55%), Gaps = 20/478 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
++ WF++DLR+ DN L + G+V+ ++I P + G SR WL HSL L S
Sbjct: 3 TLFWFKQDLRLSDNQGLYEAAKIGSVLPIYILDPNH---FSLGAASRVWLHHSLKSLSQS 59
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L G V + + V + ++VK +++N Y+P + ++ K L + + V
Sbjct: 60 LD--GKLAVFQGAPLEV--IRQLVKKYQIQAVYWNRGYEPWQISQEKEIKIQLDKE-VKV 114
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
+ +++ LL+EPW + A P+ F+ ++++ P PL P +++ + D
Sbjct: 115 QEWSSFLLWEPWKILKADETPYKVFSPYYKRGCLFADPPRDPLGSPSKLDLIPVKHHGLD 174
Query: 187 TLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPH 246
L + N L + W+ G +A K TF+ L+ Y R S LSPH
Sbjct: 175 YLDLLPKVRWDENVL--QHWNIGEKSAWKKFQTFLAEGLLYYKTGRDFPAQNAVSRLSPH 232
Query: 247 LHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHER 306
LHFGE+S ++ W+ ++ D + + FL +G RE+S Y+ ++ P +
Sbjct: 233 LHFGEISPHQI----------WSVVNSQKQDHNTSSFLSELGWREFSYYLLYHFPTLPTQ 282
Query: 307 PLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVL 366
+F W + Y + W G+TG+P+VDAGMRELW TG++H+R+R++V+SF VK L
Sbjct: 283 NFQSKFDYFPWKWESPYLQHWCSGKTGFPIVDAGMRELWQTGYMHNRVRMIVASFLVKNL 342
Query: 367 QLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYV 426
+ W+ G+ +F + LLDADL S++ WQ+++G+ D + RI NP +G KFDP+GEY
Sbjct: 343 LIHWQIGLNWFENHLLDADLASNSASWQWVAGSGADAAPYFRIFNPITQGEKFDPHGEYT 402
Query: 427 RRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
RR++PEL +LP +++ PW+AP+S+L+ AG++LG YP PI+ + ++ +A +M
Sbjct: 403 RRYVPELKKLPDKYLFCPWDAPKSILEKAGVKLGRTYPEPIIDLKQSREEALQAFDQM 460
>gi|148271713|ref|YP_001221274.1| deoxyribodipyrimidine photo-lyase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|147829643|emb|CAN00559.1| Deoxyribodipyrimidine photo-lyase [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
Length = 508
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 185/501 (36%), Positives = 265/501 (52%), Gaps = 38/501 (7%)
Query: 5 GCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYP-GRVSRWWLKHSLSHL 63
G SIVW R DLRV DNPAL A V G I V EE P G +RWWL SLS L
Sbjct: 22 GPSIVWLRDDLRVADNPALHAAVERGEPIVVLYVLDEESDGIRPLGGAARWWLHMSLSRL 81
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
SLR LG+ LV +R + + ++V+ GA + +N Y + D K+ L +G
Sbjct: 82 AESLRELGSDLVLRRGK-AADVVDDLVREIGAGAVLWNRRYGGAEIAVDTAIKKDLGDRG 140
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWE---------KCLSMPFDPDAPLLPPKR 174
+ VRSF LL EPW V + QG+PF + FW+ K L P + DAP P+
Sbjct: 141 LDVRSFQGSLLVEPWTVTNKQGEPFRVYTPFWKAAQEREEPRKPLPAPKELDAPREAPRS 200
Query: 175 INSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRK 234
+ P+ + A L + PG + + L F++ L +Y+ R +
Sbjct: 201 DDLDGWGLLPT---------KPDWAAGLRESCDPGEAAGLQRLEDFVHHELEDYAAQRDE 251
Query: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNL--FLKSIGLREY 292
+ TTS LS +L +GEVS +V+H RI++ G K G + VN FL +G RE+
Sbjct: 252 PAAMTTSRLSAYLRWGEVSPFQVWH--RIQR----TRGKKVGGDEVNATKFLSELGWREF 305
Query: 293 SRYMSFNHPYSHERPLLGHLKFFSW--VVDEGYFKAWRQGRTGYPLVDAGMRELWATGWL 350
S ++ ++ P R + F W DE AW++G TG PLVDAGMR LW G L
Sbjct: 306 SYHLLYHQPDLATRNFVPRFDAFPWDEPTDE-TLGAWQRGETGVPLVDAGMRALWKDGHL 364
Query: 351 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRID 410
H+R+R+VV+SF +K L + WR G ++FWDTL+DAD ++A WQ+++G+ D + R+
Sbjct: 365 HNRVRMVVASFLIKNLLIDWRHGEQWFWDTLVDADAANNAASWQWVAGSGADAAPYFRVF 424
Query: 411 NPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELG-------SNY 463
NP +G KFDP+GEY+R ++PELA P + +H PW A ++ +A + Y
Sbjct: 425 NPVLQGQKFDPSGEYIRSYVPELAHAPRDVVHEPWKAMGDLVASAEDGADDSDDGGLAAY 484
Query: 464 PFPIVRIDAAKCRLDEALSEM 484
P PIV + ++ R A E+
Sbjct: 485 PAPIVDLKESRQRALAAYDEI 505
>gi|134302129|ref|YP_001122098.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|421751949|ref|ZP_16188985.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis AS_713]
gi|421753807|ref|ZP_16190796.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 831]
gi|421757530|ref|ZP_16194409.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 80700103]
gi|421759384|ref|ZP_16196217.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 70102010]
gi|424674702|ref|ZP_18111618.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 70001275]
gi|134049906|gb|ABO46977.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|409086284|gb|EKM86404.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis AS_713]
gi|409086489|gb|EKM86608.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 831]
gi|409091110|gb|EKM91115.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 70102010]
gi|409092478|gb|EKM92451.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 80700103]
gi|417434746|gb|EKT89688.1| deoxyribodipyrimidine photolyase [Francisella tularensis subsp.
tularensis 70001275]
Length = 464
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 161/480 (33%), Positives = 256/480 (53%), Gaps = 32/480 (6%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
+ +I WFR+DLR+ DNPAL +A I +FI ++ G S+ WL HSL+
Sbjct: 2 SKKIAIHWFRQDLRLADNPALYQVSQADETITIFILDKNQD----IGSASKLWLHHSLNS 57
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L+SSL + + S + + + +++K T ++N YD S+ RD + K+ L
Sbjct: 58 LNSSL----DNKLNFYSGNPLEIIKKIIKENNITDFYWNRCYDKYSIDRDTQIKQFLQQH 113
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSM------PFDPDAPLLPPKRIN 176
I V SFN LL EPW G + + F+++ + + P+ L +++N
Sbjct: 114 KINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPNFSYL--RKLN 171
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
+ + D+L + N + + W G S + + L F++ + EY R
Sbjct: 172 NSE----NLDSLKLIEPKHSWQNII--KQWQIGESASHQILEEFLDNKVKEYKTARDFMS 225
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
+ +TS LSP+LHFGE+S ++F+ V+ NE + F+K + R++S Y
Sbjct: 226 TDSTSKLSPYLHFGEISPNQIFNAVQSLDYIGNNEEH---------FIKELVWRDFSYYQ 276
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
+ +P H + + F W D K W++G+TG P+VDAGMRELW G++H+R+R+
Sbjct: 277 IYYYPELHNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQAGYMHNRVRM 336
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+V+SF +K + W++G K+F+DTL DAD S+ WQ+++G D + RI NP +
Sbjct: 337 IVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQA 396
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KF+ EY+R+++PEL LP + I PW A E VLQ AGI LG NYP PIV + ++ R
Sbjct: 397 EKFEA-YEYIRKYVPELKLLPNKLIAKPWEASELVLQEAGITLGQNYPKPIVDLKKSRDR 455
>gi|77964004|gb|ABB13343.1| cryptochrome 1b [Hordeum vulgare subsp. vulgare]
Length = 286
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 162/274 (59%), Positives = 193/274 (70%), Gaps = 13/274 (4%)
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
EGYKFDP+GEYVRRWLPELARLPTEWIHHPW+AP SVLQAAG+ELGSNYP PIV +D A+
Sbjct: 1 EGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPASVLQAAGVELGSNYPLPIVELDTAQ 60
Query: 475 CRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPAR--NNLP 532
RL EALSEMWQ EAASRAA++ G EEGLGDSS+ PI FP D+QME EPAR N+
Sbjct: 61 VRLQEALSEMWQLEAASRAAMDTGMEEGLGDSSEVPPIEFPQDLQMEVHWEPARVAPNVL 120
Query: 533 TTARRYEDQMVPSMTTSLVRVEEEESSLELRNSAEESRAEVPRNANVNQEPRRDTLNQGV 592
TTA+R +DQMVP+MTTSL RVE E S+ +L NS +SRAEVP + R+ + Q
Sbjct: 121 TTAQRRQDQMVPTMTTSLNRVETEISA-DLGNSV-DSRAEVPFRMHFEPRTEREEIIQST 178
Query: 593 LQTV-----HNNNAFQQFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWS-PATSSYSE 646
V H++N FQQ + N + +S+S RDGGVVPVWS PA S +SE
Sbjct: 179 GNAVGTNGIHHHNNFQQPQHR--MRNIFAPSVSEASSSWTGRDGGVVPVWSPPAASGHSE 236
Query: 647 QLVGDENGIGTSSSYLQRHPQSHQIMNCRRLSQT 680
DE + +S SYL RHPQSH+IMN +LSQ+
Sbjct: 237 TYGADEADV-SSRSYLDRHPQSHRIMNWHQLSQS 269
>gi|340356010|ref|ZP_08678676.1| deoxyribodipyrimidine photolyase [Sporosarcina newyorkensis 2681]
gi|339621805|gb|EGQ26346.1| deoxyribodipyrimidine photolyase [Sporosarcina newyorkensis 2681]
Length = 470
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 168/478 (35%), Positives = 240/478 (50%), Gaps = 21/478 (4%)
Query: 5 GCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
G +IVWFR+DLR+ D+PAL G V+ VFI PE S WWL HSL L
Sbjct: 2 GKTIVWFRKDLRLHDHPALVEAAAHGEVVPVFI-LPESRQ-----EASDWWLHHSLLELQ 55
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
L+ ++ + V LL V + +GA + FN LYDP S ++ A +
Sbjct: 56 KKFAERQIQLIVRKGS-PVGQLLAVQQDSGAEGIVFNELYDPASRRQEQDVLSAFLDLEV 114
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
VRS LL P + + +P+ F FW++ + P+ P + S +
Sbjct: 115 QVRSHQGTLLVPPTLILNKTCEPYKVFTPFWKRLRQERVEQSLPV--PNMLPSSTLLTSL 172
Query: 185 SDTL--VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
D+ + S G W PG + A + TF L Y + R S
Sbjct: 173 PDSKWDLLPGPSWHGK---FIHYWRPGEAAAIECWKTFSGQGLSSYKEGRDIPAKPHVSR 229
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSP+L G +SVR ++H ++ GD+ FL+ + R+++ Y P
Sbjct: 230 LSPYLAAGNISVRSLWHAA-------LHQTEFIGDDQTEAFLRQLAWRDFAHYQLLYFPK 282
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+RP+ F W + AW+ GRTGYPLVDAGMRELW TG++H+R+R+V +SF
Sbjct: 283 MLDRPIRPEFDRFPWQEAGEHLAAWKTGRTGYPLVDAGMRELWETGYIHNRVRMVAASFL 342
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L + WR G +F TL+D D ++A+GWQ+++G+ D + RI NP +G KFD
Sbjct: 343 VKHLLVDWREGQAWFEQTLVDWDAANNAMGWQWVAGSGCDASPYFRIFNPTVQGEKFDGA 402
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
YV++WLPEL +P +++ P AP VL AG+ LG NYP PIV AA+ R EA
Sbjct: 403 AGYVKKWLPELESMPEKFVFRPAEAPADVLSTAGVRLGGNYPLPIVDHQAARARALEA 460
>gi|402819360|ref|ZP_10868928.1| hypothetical protein IMCC14465_01620 [alpha proteobacterium
IMCC14465]
gi|402511507|gb|EJW21768.1| hypothetical protein IMCC14465_01620 [alpha proteobacterium
IMCC14465]
Length = 474
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 166/484 (34%), Positives = 258/484 (53%), Gaps = 24/484 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I WFR+DLR+ DNPAL +G VI +FI+ P++ G + WW + SL+ L+++
Sbjct: 6 IYWFRQDLRLADNPALLHAAHSGKTVIPIFIFDPDDRSL---GMAASWWRQQSLAKLEAA 62
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG--- 123
L+ +G L V L ++ A ++ +N YD S+ RD K+ L G
Sbjct: 63 LKKIGGKLSFYEGR-PVEVLQKLSDFYEADEIVWNRQYDGYSVSRDKEIKQTLPNSGTGN 121
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSG---DM 180
I +SFNA LL+EPW + + G F F +W +C++ P+AP PP + S D
Sbjct: 122 IECKSFNASLLFEPWLIQNKSGSYFKVFTPYWRQCMAGN-APEAPCPPPTELRSHPDVDP 180
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
+ P +++ L+A W+PG + A + FI L Y++ R D T
Sbjct: 181 FQIPLPASPLTADAD-----LIAEEWTPGEAGAYQQFENFIEEGLEIYAEFRDFPDRPAT 235
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP+L +GE+S R+++ ++ + K +++++ FL IG RE+S ++ ++
Sbjct: 236 SRLSPYLRWGEISPRQIW-----SKIQFVKSHEKFSEQTISKFLAEIGWREFSHHLIYHV 290
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P + L F W+ +E W+ G TGYPLVDAGMREL TG++H+R+R++ +S
Sbjct: 291 PEMATQNLQPSFNDFPWLENEEALLQWQAGNTGYPLVDAGMRELRRTGYMHNRVRMITAS 350
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F +K L + WR G KYFWD LLDA ++ GWQ+++G+ D F RI NP +G KFD
Sbjct: 351 FLIKHLMIDWRAGEKYFWDRLLDACPANNITGWQWVAGSGADAAPFFRIFNPIIQGEKFD 410
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P G Y +R++PEL+ L + + PW + E YP PIV A+ R +A
Sbjct: 411 PQGAYTKRFIPELSHLEQKHLFSPWKVKSDNMDLDFQE--GQYPDPIVEHGYARNRALDA 468
Query: 481 LSEM 484
++
Sbjct: 469 FQQI 472
>gi|384218167|ref|YP_005609333.1| DNA photolyase [Bradyrhizobium japonicum USDA 6]
gi|354957066|dbj|BAL09745.1| DNA photolyase [Bradyrhizobium japonicum USDA 6]
Length = 447
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 160/443 (36%), Positives = 239/443 (53%), Gaps = 11/443 (2%)
Query: 35 VFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATG 94
+ ++ +E PG +RWWL SL L + + G SL+ ++ + + EV + +G
Sbjct: 2 ICLYVMDEMAGRAPGGATRWWLAQSLRALGAETATRGGSLILRKGP-AAKVIPEVARESG 60
Query: 95 ATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF 154
A +++N + + + + AL G+ +SF DLL P + + +G+ F F
Sbjct: 61 AAMVYWNGVAQAPHQSVEKQLEAALAKLGVDSQSFPGDLLVPPSAIRNKEGRGLRVFTPF 120
Query: 155 WEKCLSMPFDPDAPLLPPKRINSGD-MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNA 213
W + +S+ DP PL P+ + ++ ++ E + L + W+PG ++A
Sbjct: 121 WRRVVSL-GDPPKPLPAPRELRPAPPLAGDALESWTLEPTKPDWAGGL-RQTWTPGEASA 178
Query: 214 DKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGN 273
L F+ Y +R + D TS LSPHL FGE+S R+V+H R A N
Sbjct: 179 RMRLRDFLRHTARVYVGDRDRPDREGTSSLSPHLRFGELSPRQVWHAARF-----AAAEN 233
Query: 274 KAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTG 333
A V FL +G RE+ R++ +HP L + F W D+ AW++GRTG
Sbjct: 234 PAIGPGVEKFLSELGWREFCRHLLHDHPSLATENLQTNFDGFPWKGDKKALAAWQRGRTG 293
Query: 334 YPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGW 393
YP+VDAG+RELW TG +H+R+R+VV+SF VK L + WR G +FWDTL+DAD S+ W
Sbjct: 294 YPIVDAGLRELWHTGVMHNRVRMVVASFLVKHLLIDWRDGESWFWDTLVDADAGSNPANW 353
Query: 394 QYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQ 453
Q+++G D + R+ NP +G KFDP+G YVRRW+PEL +P + IH PW A L
Sbjct: 354 QWVAGCGADAAPYFRVFNPTLQGEKFDPDGAYVRRWVPELKDVPAKLIHQPWQASPIELA 413
Query: 454 AAGIELGSNYPFPIVRIDAAKCR 476
+AG+ LG YP PIV D AK R
Sbjct: 414 SAGVTLGKTYPQPIV--DHAKGR 434
>gi|387824331|ref|YP_005823802.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida 3523]
gi|328675930|gb|AEB28605.1| Deoxyribodipyrimidine photolyase [Francisella cf. novicida 3523]
Length = 464
Score = 280 bits (715), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 164/481 (34%), Positives = 259/481 (53%), Gaps = 27/481 (5%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
+ +I WFR+DLR+ DNPAL +A I +FI ++ G S+ WL HSL++
Sbjct: 2 SKKVAIHWFRQDLRLADNPALYHASQADETITIFILDENQD----IGGASKLWLHHSLNN 57
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L+ RSL L + + + + +++K T ++N YD S+ RD + K+ L Q
Sbjct: 58 LN---RSLNDKL-NFYNGNPLEIIKKLIKENKVTDFYWNRCYDKYSINRDTQIKQFLQEQ 113
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSM-PFDPDAPLLPPKRINSGDMS 181
I V SFN LL EPW G + + F+++ + + + P+ K + S +
Sbjct: 114 SINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYQPNIK----KAVFSRLIK 169
Query: 182 RCPSDTL-VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
SDTL + K + + + W G A + L F+ + +Y R + T
Sbjct: 170 LASSDTLDSLKLLEPKLTWQNIIKQWQVGEKAAAQLLEQFLTTKIKDYKIARDYMSTDAT 229
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP+LHFGE+S ++F+ V+ NE + F+K + R++S Y + +
Sbjct: 230 STLSPYLHFGEISPNQIFNAVQSLDSIGNNEEH---------FIKELVWRDFSYYQIYYY 280
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P H + + F+W + K W++G+TG P+VDAGMR+LW TG++H+R+R++V+S
Sbjct: 281 PELHNKNINQKFDNFAWDNNATLLKKWQKGQTGIPIVDAGMRQLWQTGYMHNRVRMIVAS 340
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F +K + W++G K+F+DTL DAD S+ WQ+++G D + RI NP + KF+
Sbjct: 341 FLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKFE 400
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
EY+R+++PEL LP + I PW A E VLQ AGI LG NYP PIV + ++ D+A
Sbjct: 401 A-YEYIRKYVPELKLLPNKLIAKPWEASELVLQEAGIILGQNYPRPIVDLKNSR---DKA 456
Query: 481 L 481
L
Sbjct: 457 L 457
>gi|170703393|ref|ZP_02894172.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria IOP40-10]
gi|170131701|gb|EDT00250.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria IOP40-10]
Length = 505
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 183/485 (37%), Positives = 256/485 (52%), Gaps = 13/485 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFR DLRV D PAL V +G ++ V++ E G +RWWL SL+ LD+
Sbjct: 10 AVVWFRDDLRVTDQPALTRAVASGRPLVCVYLDDTGEGAGRALGGAARWWLHGSLAALDA 69
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L G L+ R D+ + VV TGA +++N Y D K L A+G+
Sbjct: 70 ALARHGGRLLLLRG-DAQREIERVVHDTGAAAVYWNRRYAQPQRDADAALKATLKARGLE 128
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRIN-----SGDM 180
V S N LL EPW+V G PF F A+W + + APL P+RI +G
Sbjct: 129 VESSNGSLLNEPWEVMTGAGTPFQIFTAYW-RAVRRDRTVAAPLPEPERIAFHPWPAGMR 187
Query: 181 SRCPS-DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
R + DTL + + L +P + A L F++ L Y+ +R +
Sbjct: 188 ERALALDTLALRPHAPDWAGGLRDAWPTPDEAGAHAGLDAFVHASLAGYADSRDRPGQPA 247
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP L FG VS R+V+H V+ + ++ FL +G RE+S + ++
Sbjct: 248 TSRLSPFLRFGNVSPRQVWHAVQGAAQAGGAACAAGAEK----FLSELGWREFSHVLLYH 303
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P W D +AW++G TGYPLVDAGMRELW TGW+H+R+R+VV+
Sbjct: 304 FPALATDNFRAQFDAMPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTGWMHNRVRMVVA 363
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L + WR G ++F DTL+DAD ++ WQ+++G D + RI NP +G KF
Sbjct: 364 SFLVKHLLIDWRVGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFRIFNPVTQGRKF 423
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP G YVRRW+PELA L IH PW A + L AAG+ L +YP PIV D A+ R +
Sbjct: 424 DPQGAYVRRWVPELAGLDAAAIHAPWEASTAQLAAAGVRLALDYPAPIVDHDGARRRALD 483
Query: 480 ALSEM 484
AL+ +
Sbjct: 484 ALATL 488
>gi|254373077|ref|ZP_04988566.1| hypothetical protein FTCG_00652 [Francisella tularensis subsp.
novicida GA99-3549]
gi|151570804|gb|EDN36458.1| hypothetical protein FTCG_00652 [Francisella novicida GA99-3549]
Length = 464
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 162/480 (33%), Positives = 257/480 (53%), Gaps = 32/480 (6%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
+ +I WFR+DLR+ DNPAL +A I +FI + +G G S+ WL +SL+
Sbjct: 2 SKKIAIHWFRQDLRLADNPALYQASQADETITIFI-LDKNQGI---GGASKLWLHYSLNS 57
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L+SSL + + S + + + +++K T ++N YD S+ RD + K+ L
Sbjct: 58 LNSSL----DNKLNFYSGNPLEIIRKIIKENNITDFYWNRCYDKYSIDRDTQIKQFLQQH 113
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSM------PFDPDAPLLPPKRIN 176
I V SFN LL EPW G + + F+++ + + P+ L +++N
Sbjct: 114 KINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPNFSYL--RKLN 171
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
+ + D+L N + + W G S + + L F++ + EY R
Sbjct: 172 NSE----NLDSLKLLQPKHSWQNII--KQWQIGESASHQILEEFLDNKVKEYKTARDFMS 225
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
+ +TS LSP+LHFGE+S ++F+ V+ NE + F+K + R++S Y
Sbjct: 226 TDSTSKLSPYLHFGEISPNQIFNAVQSLDYIGNNEEH---------FIKELVWRDFSYYQ 276
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
+ +P H + + F W D K W++G+TG P+VDAGMRELW TG++H+R+R+
Sbjct: 277 IYYYPELHNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQTGYMHNRVRM 336
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+V+SF +K + W++G K+F+DTL DAD S+ WQ+++G D + RI NP +
Sbjct: 337 IVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQA 396
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KF+ EY+R+++PEL LP + I PW A E VLQ AGI LG NYP PIV + ++ R
Sbjct: 397 EKFEA-YEYIRKYVPELKLLPNKLIAKPWEASELVLQEAGITLGQNYPKPIVDLKKSRDR 455
>gi|117924446|ref|YP_865063.1| deoxyribodipyrimidine photo-lyase type I [Magnetococcus marinus
MC-1]
gi|117608202|gb|ABK43657.1| deoxyribodipyrimidine photo-lyase type I [Magnetococcus marinus
MC-1]
Length = 476
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 173/475 (36%), Positives = 248/475 (52%), Gaps = 35/475 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAP-EEEGPYYPGRVSRWWLKHSLSHLDSS 66
IVWFRRDLR+ DNPAL A G V+ V+I ++EG G RW L+ +L+ L++
Sbjct: 9 IVWFRRDLRLSDNPALLAATAMGQVLPVYIHENNQQEGG---GGAWRWGLQQALAALNAD 65
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L+ V D L EV A GAT +++N LY P ++ RD K++L +G+ V
Sbjct: 66 LQGKLCCYVG----DPARLLPEVAHAVGATGVYWNRLYTPQAIKRDRAIKQSLIERGLQV 121
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM------ 180
RSFN LL+EPW V A P+ F ++ + + P P+ P + +
Sbjct: 122 RSFNGSLLWEPWQVLKADKTPYKVFTPYYRRGCLVQDVPRQPMDAPPTVTWATLPAAAPA 181
Query: 181 -SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTT----FINGPLIEYSKNRRKA 235
S D L+ D S + W WS ++A T F++ L Y + R
Sbjct: 182 PSMQALDALLLGDVSWH-------KKWHGIWSMGEEAAQTRFEHFLSHGLACYDQGRDFP 234
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
TS LS L +G L+ QV + E KA + SV+ F + RE++ Y
Sbjct: 235 GRDCTSRLSTALQYG---------LLSPNQVWYGLEHAKADEHSVDKFRSELAWREFAYY 285
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
F+ P + F W+ DE W+ G+TG P+VDAGMRELW TG +H+R+R
Sbjct: 286 QLFHFPSLPHKNFQPKFDHFPWLEDEVALGRWQTGQTGIPIVDAGMRELWQTGVMHNRVR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++V SF VK L L WR G +F D L+D DL ++ WQ+++G D + RI NP +
Sbjct: 346 MLVGSFLVKNLLLDWRAGAAWFKDCLVDYDLAINSASWQWVAGCGADAAPYFRIFNPVTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRI 470
G KFD NG Y RR++PELA LP +++ PW AP S+L+ AG+ LG +YP P+V +
Sbjct: 406 GEKFDRNGTYTRRFVPELANLPDQYLFKPWMAPASILRQAGVRLGQDYPEPLVDL 460
>gi|78066957|ref|YP_369726.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia sp. 383]
gi|77967702|gb|ABB09082.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia sp. 383]
Length = 518
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 178/469 (37%), Positives = 244/469 (52%), Gaps = 13/469 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFR DLRV D PAL V +G ++ VF+ + G +RWWL SL+ LD+
Sbjct: 36 AIVWFRDDLRVTDQPALTRAVESGRPLVCVFVDDTGDGAGRALGGAARWWLHGSLAGLDA 95
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L G L+ R D+ + VV TGA +++N Y D K +L A+G+
Sbjct: 96 ALARHGGRLLLLRG-DAQREIERVVHDTGAEAVYWNRRYAQPQRDADAALKASLKARGVT 154
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
V S N LL EPW+V G P+ F A+W + PL P+RI +
Sbjct: 155 VESSNGSLLNEPWEVLTGSGGPYQVFTAYW-RAARRDRTVAVPLPEPERIAFHPWPKAVR 213
Query: 186 DTLVFED-----ESEKGSNALLARAW-SPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
D + D L AW +P + A L F+ L Y+ R D
Sbjct: 214 DCALALDVLALRPPVPDWAGGLRDAWPAPDEAGAHARLDAFLTASLAGYADARDLPDRPA 273
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP L FG +S R+V+H V+ + D+ FL +G RE+S + ++
Sbjct: 274 TSRLSPFLRFGNLSPRQVWHAVQGAANAGGAAVAADADK----FLSELGWREFSYTLLYH 329
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P W D +AW++GRTGYPLVDAG+RELW TGW+H+R+R+VV+
Sbjct: 330 FPALASDNFRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMHNRVRMVVA 389
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF +K L + WR G +FWDTL+DAD ++A WQ+++G D + RI NP +G KF
Sbjct: 390 SFLIKHLLIDWRAGEAWFWDTLVDADPANNAASWQWVAGCGADAAPYFRIFNPVAQGQKF 449
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
DP+G YVRRW+PELA L IH PW A L AAG+ LG +YP P+V
Sbjct: 450 DPDGAYVRRWVPELAGLDNASIHAPWEASPLELDAAGVRLGVDYPAPLV 498
>gi|326403807|ref|YP_004283889.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301]
gi|325050669|dbj|BAJ81007.1| deoxyribodipyrimidine photo-lyase [Acidiphilium multivorum AIU301]
Length = 471
Score = 278 bits (712), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 169/481 (35%), Positives = 254/481 (52%), Gaps = 19/481 (3%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+++W R DLR+ DNPALAA + G V+ VF+ P E G SRWWL HSL+ L++
Sbjct: 3 TTLLWLRNDLRLADNPALAAAIEEGNVLPVFVLDPAAE----TGGASRWWLHHSLAALEA 58
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+ G LV +R D+ + + + + GA + ++P D R AL GI
Sbjct: 59 DFAARGGRLVLRRG-DAAAIVPALAREIGAVAVHAGRAHEPWLREADRRVAAALQEAGIG 117
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMS--RC 183
+ L++ P + G + + F C P + +GD R
Sbjct: 118 FHRHRSALMFGPERITTRTGGVYGVYTPFSRACFDAFAPRPPIPAPARLAAAGDPGGDRL 177
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
L+ G L +W+PG + A L F+ EY + R A TS L
Sbjct: 178 GDWGLLPVKPDWAGG---LRASWTPGEAGARARLDAFLADGFGEYDRQRDLPGVAGTSGL 234
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SPHLH+GE+++ V+ + + A G A ++ FLK + RE++ Y+ ++ P
Sbjct: 235 SPHLHWGEIAIDAVW------RAAVAAPGRDAARQT---FLKELIWREFAAYLLWHTPDL 285
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
RP+ W AW+ GRTG P+VDAGMR+LW TGW+H+R+R++V+SF V
Sbjct: 286 ATRPMKAQFAAMPWRESAADLAAWQHGRTGVPIVDAGMRQLWQTGWMHNRVRMIVASFLV 345
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L LPW+ G ++F D L+DAD S+A WQ+++G+ D + RI NP +G KFDP+G
Sbjct: 346 KHLLLPWQAGERWFHDCLVDADAASNAASWQWVAGSGADAAPYFRIFNPVLQGRKFDPDG 405
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSE 483
YVRR++PE+A LP +++H PW APE VL+ AG+ LG++YP PIV + + R A +
Sbjct: 406 AYVRRFVPEIANLPDKYLHAPWEAPEIVLRGAGVRLGASYPRPIVDLAEGRERALAAFAA 465
Query: 484 M 484
+
Sbjct: 466 I 466
>gi|148260613|ref|YP_001234740.1| deoxyribodipyrimidine photo-lyase [Acidiphilium cryptum JF-5]
gi|146402294|gb|ABQ30821.1| deoxyribodipyrimidine photo-lyase type I [Acidiphilium cryptum
JF-5]
Length = 471
Score = 278 bits (712), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 168/481 (34%), Positives = 255/481 (53%), Gaps = 19/481 (3%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+++W R DLR+ DNPALAA + G V+ VF+ P E G SRWWL HSL+ L++
Sbjct: 3 TTLLWLRNDLRLADNPALAAAIEEGNVLPVFVLDPAAE----TGGASRWWLHHSLAALEA 58
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+ G LV +R D+ + + + + GA + ++P D R AL GI
Sbjct: 59 DFTARGGRLVLRRG-DAAAIVPALAREIGAVAVHAGRAHEPWLREADRRVAAALQEAGIG 117
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMS--RC 183
+ L++ P + G + + F C P + +GD R
Sbjct: 118 FHRHRSALMFGPERITTRTGGVYGVYTPFSRACFDAFAPRPPIPAPARLAAAGDPGGDRL 177
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
L+ G L +W+PG + A L F+ EY + R A TS L
Sbjct: 178 GDWGLLPVKPDWAGG---LRASWTPGEAGARARLDAFLADGFGEYDRQRDLPGIAGTSGL 234
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SPHLH+GE+++ V+ + + A G A ++ FLK + RE++ Y+ ++ P
Sbjct: 235 SPHLHWGEIAIDAVW------RAAVAAPGRDAARQT---FLKELIWREFAAYLLWHTPDL 285
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
RP+ W AW++GRTG P+VDAGMR+LW TGW+H+R+R++V+SF V
Sbjct: 286 ATRPMKAQFAAMPWRESAADLAAWQRGRTGVPIVDAGMRQLWQTGWMHNRVRMIVASFLV 345
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L LPW+ G ++F D L+DAD S+A WQ+++G+ D + RI NP +G KFDP+G
Sbjct: 346 KHLLLPWQAGERWFHDCLVDADAASNAASWQWVAGSGADAAPYFRIFNPVLQGRKFDPDG 405
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSE 483
YVRR++PE+A LP +++H PW APE VL+ AG+ LG++YP P+V + + R A +
Sbjct: 406 AYVRRFVPEIANLPDKYLHAPWEAPEIVLRGAGVRLGASYPRPVVDLAEGRERALAAFAA 465
Query: 484 M 484
+
Sbjct: 466 I 466
>gi|90415238|ref|ZP_01223172.1| putative photolyase [gamma proteobacterium HTCC2207]
gi|90332561|gb|EAS47731.1| putative photolyase [marine gamma proteobacterium HTCC2207]
Length = 445
Score = 278 bits (711), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 159/432 (36%), Positives = 236/432 (54%), Gaps = 18/432 (4%)
Query: 49 GRVSRWWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLS 108
G SRWWL H+L LD SL + S D+++ L E+ + A +++N Y+P S
Sbjct: 15 GGASRWWLHHALQSLDKSL----DGKLNIFSGDALAILSELSASMSAKAVYWNRCYEPQS 70
Query: 109 LVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAP 168
+ RD K L G+ V+SFN LL+EPW V G P+ F ++ + P P
Sbjct: 71 IERDANIKTRLKEAGLDVQSFNGSLLWEPWQVLKKDGTPYKVFTPYYRRGCLQKVAPRQP 130
Query: 169 LLPPKRINSGDMSRCPSDTLVFEDESEKGS---NALLARAWSPGWSNADKALTTFINGPL 225
L PK + D+ + ++L ED S + + L W A L F+ +
Sbjct: 131 LPVPKTL---DLVKA-DNSLTVEDLSLLPAIDWDKKLHGDWDISEDGAKDRLDDFVFNGI 186
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
+Y + R + S LSP+ HFG++SV ++ NE N ++ FL
Sbjct: 187 QDYREGRNFPNKKNVSRLSPYFHFGQMSVNTAWYAANDAAALIDNESN------LDTFLS 240
Query: 286 SIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVD-EGYFKAWRQGRTGYPLVDAGMREL 344
+G RE+S Y+ ++ P L F W + + KAW++G+TGYPLVDAGMREL
Sbjct: 241 ELGWREFSYYLLYHFPKLPTDNLQQRFNVFPWAKNTDAELKAWQKGKTGYPLVDAGMREL 300
Query: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 404
+ TG++H+R+R+VV SF VK L + W G ++FWD L+DADL +++ WQ+I+G D
Sbjct: 301 YGTGYMHNRVRMVVGSFMVKNLLIHWHSGERWFWDCLVDADLAANSASWQWIAGCGADAA 360
Query: 405 AFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
F RI NP + KFD G+Y+RR +PELA +P ++IH PW AP VL AAG+E+G++YP
Sbjct: 361 PFFRIFNPITQSEKFDKQGDYIRRHVPELAEMPAKYIHAPWLAPADVLAAAGVEIGTDYP 420
Query: 465 FPIVRIDAAKCR 476
PI+ I ++ R
Sbjct: 421 APIIDIKESRER 432
>gi|222148397|ref|YP_002549354.1| DNA photolyase [Agrobacterium vitis S4]
gi|221735385|gb|ACM36348.1| DNA photolyase [Agrobacterium vitis S4]
Length = 483
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 175/479 (36%), Positives = 256/479 (53%), Gaps = 17/479 (3%)
Query: 7 SIVWFRRDLRVEDN-PALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+I+WFR+DLR++DN LAA AG VI ++I PEE G G WWL HSL LD
Sbjct: 9 TILWFRKDLRLDDNRALLAALQAAGPVIPLYIREPEEMGTGPLGPAQAWWLHHSLVSLDQ 68
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SL+S G+ LV +R L +++ TG+ + +N YDP + D K AL + G+
Sbjct: 69 SLQSYGSRLVLRRGPPG-QVLRHLIEETGSKAVHWNRRYDPSGMAIDAELKAALRSDGLE 127
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
S LL+EP V G PF + FW + L DP P+ PK ++ + + P
Sbjct: 128 ATSHAGFLLHEPSKVKTGSGGPFRVYTPFW-RALEKQGDPPPPVERPKTLH--NPAHWP- 183
Query: 186 DTLVFED----ESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
D+ ED ++ + W+PG A L+ FI+ L Y R TS
Sbjct: 184 DSDRLEDWQLLPTKPDWAKEFSEIWTPGEPGAQDKLSQFIDHGLKGYRTQRDFPALPHTS 243
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSPHL GE+S +++H G+ + F K + RE+S ++ F+
Sbjct: 244 GLSPHLALGEISPARIWHAT-------IGLGDDVSTDDYVHFRKELVWREFSYHLLFHFA 296
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ F W + + AW++G+TGYP+VDAGMR+LW G +H+R+R++V+SF
Sbjct: 297 DLASQNWNDRFNDFPWKKNAEFLSAWQRGQTGYPIVDAGMRQLWRHGVMHNRVRMIVASF 356
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
+K L + WR G +F TL+DAD S+A WQ+++G+ D F RI NP + KFDP
Sbjct: 357 LIKDLMIDWREGEAWFRYTLVDADPASNAASWQWVAGSGADASPFFRIFNPITQSEKFDP 416
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
+G+Y+R+++PELA+LP IH P+ AP +L+ AGI LG YP P+V A+ EA
Sbjct: 417 DGDYIRQFVPELAKLPNNLIHRPFEAPAPLLEKAGITLGKTYPAPLVDHKRARAVALEA 475
>gi|270159915|ref|ZP_06188571.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968]
gi|289165333|ref|YP_003455471.1| deoxyribodipyrimidine photolyase phrB [Legionella longbeachae
NSW150]
gi|269988254|gb|EEZ94509.1| deoxyribodipyrimidine photo-lyase [Legionella longbeachae D-4968]
gi|288858506|emb|CBJ12387.1| putative deoxyribodipyrimidine photolyase phrB [Legionella
longbeachae NSW150]
Length = 472
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 165/473 (34%), Positives = 250/473 (52%), Gaps = 21/473 (4%)
Query: 7 SIVWFRRDLRVEDNPA-LAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFR DLR+ DNPA + A VI ++I+ +E G WWL HSL+ L +
Sbjct: 4 ALVWFRFDLRLNDNPAFIEACSHHQFVIPLYIY---DEKNSVLGGAQAWWLYHSLTSLSN 60
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SL G +L+ ++ D + +L++ K + +++N Y+P+++ RD K L +GI
Sbjct: 61 SLAQRGLNLILRKG-DPLEIILDLAKTVSISSVYWNRCYEPVAISRDKGIKATLLERGID 119
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPL-LPPKRINSGDMSRCP 184
V S N LL+EPW + + G F F +W+ C + + P+ L + + S
Sbjct: 120 VHSSNGSLLHEPWTIRNKSGDYFKVFTPYWKHCKQL-INIQRPMNLEHRPVGVEVQSELL 178
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
+D + + A + W PG A + L FI L Y NR TS LS
Sbjct: 179 NDWKLLPTINWA---ARFSEYWIPGEGGAQQKLKEFIEHHLNGYKNNRDFPIKNATSRLS 235
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGD-ESVNLFLKSIGLREYSRYMSFNHPYS 303
PHLHFGE+S + + + ++ N D S FL +G RE+S Y+ ++ P
Sbjct: 236 PHLHFGEISPWTILRAIELAKL------NPNCDLASAEHFLSELGWREFSVYLLYHFPKL 289
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
F W DE WR+G TGYP++DAGMRELWATG++H+R+R++ +SF
Sbjct: 290 PSENFRNEFDAFPWHNDEKLLSYWRRGLTGYPIIDAGMRELWATGYMHNRVRMIAASFLT 349
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WR G +F DTL+DADL +++ WQ+++G D + RI NP + KFD +G
Sbjct: 350 KGLLIDWRLGADWFLDTLVDADLANNSASWQWVAGCGADAAPYFRIFNPVLQSQKFDADG 409
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
Y+R W+PEL++L ++ IH PW ESV + L + YP PI+ A+ R
Sbjct: 410 SYIRHWVPELSQLDSQSIHAPW---ESV-GSERFYLNTKYPKPIIDHHEARTR 458
>gi|349701797|ref|ZP_08903426.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter europaeus LMG
18494]
Length = 466
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 169/472 (35%), Positives = 239/472 (50%), Gaps = 38/472 (8%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYP-GRVSRWWLKHSLSHLDS 65
+I+WFR DLR+ DNPAL V G V+ +++ P +P G +WWL +LS LD
Sbjct: 7 TIMWFRDDLRLGDNPALCDAVSRGRVVCLYV-----HDPAFPLGGAEKWWLHGALSALDH 61
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
LR+ G L + D+ S+L + TGA + +N Y P + D K AL A+G+
Sbjct: 62 DLRAQGGRLCIM-AGDTHESVLWLAARTGAGAVVWNRRYGPRARQVDTDVKAALKARGVD 120
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDA---------PLLPPKRIN 176
S ++L+EPW V QG PF F +W + ++PP+
Sbjct: 121 AHSHPGNMLHEPWQVRTKQGTPFRVFTPWWRAVQAKGPPLPPLPAPDQPAFAVVPPE--- 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
GD P+D + + L W PG + A L F+ + Y+ R
Sbjct: 178 IGDRLVRPADLALLPVRPDWAQG--LRAQWQPGEAAAHARLDAFVAERVHGYATQRELPA 235
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LSP+L FG VS R+V+H V E GD+ FL +G R+++
Sbjct: 236 QPATSGLSPYLRFGHVSPRQVWHAV---------ETLGPGDQDSACFLSEVGWRDFAHAT 286
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
F+ P L W D +AW++G+TGYP++DAGMRELW TGW+H+R+R+
Sbjct: 287 LFDFPGMGTGNLRPEYDNMPWRHDPVALRAWQKGKTGYPIIDAGMRELWHTGWMHNRVRM 346
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
VV+SF K L L WR G +F DTL+DAD S+ WQ+++G D + R+ NP +G
Sbjct: 347 VVASFLTKHLLLDWRVGEAWFADTLVDADAASNPFNWQWVAGCGLDAAPYFRVFNPVAQG 406
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
KFDP G+YVR+W+PE+A LP ++IH PW AG YP PIV
Sbjct: 407 EKFDPAGDYVRKWVPEIAHLPNKYIHAPWK--------AGPSAPGGYPAPIV 450
>gi|297721439|ref|NP_001173082.1| Os02g0625000 [Oryza sativa Japonica Group]
gi|255671101|dbj|BAH91811.1| Os02g0625000 [Oryza sativa Japonica Group]
Length = 334
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 131/263 (49%), Positives = 177/263 (67%), Gaps = 15/263 (5%)
Query: 315 FSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGM 374
F + DE FK+WRQG TGYPLVDAGMRELWATGW H+RIRV++SSF VK L +PW WGM
Sbjct: 20 FENIHDEERFKSWRQGMTGYPLVDAGMRELWATGWTHNRIRVIISSFAVKFLLIPWTWGM 79
Query: 375 KYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELA 434
KYFWD LLDADLESD LGWQYISG++PDG R+DNP+ +G K+DP+G YVR W+PELA
Sbjct: 80 KYFWDVLLDADLESDILGWQYISGSLPDGHELSRLDNPEVQGQKYDPDGVYVRTWIPELA 139
Query: 435 RLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAA 494
R+PTEWIHHPW+AP +L+ AG+ELG NYP PIV + A+ LD+++S MWQ + A + A
Sbjct: 140 RMPTEWIHHPWDAPSCILEVAGVELGFNYPKPIVDLHIARECLDDSISTMWQLDTAEKLA 199
Query: 495 IENG--TEEGLGDSS----------DSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQM 542
+G E+ L + +++P A P D + +P + + ++ +
Sbjct: 200 ELDGEVVEDNLSNIKTFDIPKVVLRETSPCALPID---QRVPHASSKDHNLKSKVLKASN 256
Query: 543 VPSMTTSLVRVEEEESSLELRNS 565
S+ ++R + E++ + NS
Sbjct: 257 RSSICVDMIRSSKMEATSSVANS 279
>gi|307945306|ref|ZP_07660642.1| cryptochrome-2 [Roseibium sp. TrichSKD4]
gi|307771179|gb|EFO30404.1| cryptochrome-2 [Roseibium sp. TrichSKD4]
Length = 486
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 168/477 (35%), Positives = 249/477 (52%), Gaps = 22/477 (4%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIW--APEEEGPYYPGRVSRWWLKHSLSHL 63
SIVWFR+DLRV DN AL + G VI VFIW A G +WWL HSL+
Sbjct: 9 TSIVWFRQDLRVADNAALYHAAQEGPVIPVFIWDDAAPLTNSQAIGAAGKWWLHHSLT-- 66
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
+LR LV R D + L E+ T A + +N YD + RD + K L G
Sbjct: 67 --ALREQLGDLVVLRG-DPATVLQELALETKAEAVRWNRAYDEYGIERDKKIKTELRESG 123
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSG----D 179
+ V+SF ++L+EPWD+ G + ++ +W + APL P +I
Sbjct: 124 LMVKSFKGNVLHEPWDIKTGSGSSYKVYSHYWRAVKARGVA--APLPVPDKIELAVGWVS 181
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+ D L + +G W+PG A + L F++ L Y + R + D
Sbjct: 182 LGIEALDLLPRDPNWAEG----WENVWTPGEQGARERLCVFLDQGLNGYGELRNRPDLPN 237
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
S LSPHL FGE+S +++ ++ A + FL I RE+S ++ F+
Sbjct: 238 VSRLSPHLRFGEISPTQIWATTQMHADVHPEHATDA-----DKFLSEIVWREFSYHLLFH 292
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P E+ + W + +AW++G+TGYP+VDAGMRELW TG++H+R+R++V+
Sbjct: 293 FPDLPEKNWKVGFDAYPWRENAEDLRAWQRGQTGYPIVDAGMRELWQTGYMHNRVRMIVA 352
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L++ W+ G +F DTLLDAD+ +++ WQ++SGT D + RI NP + KF
Sbjct: 353 SFLVKHLRISWQHGENWFRDTLLDADVANNSASWQWVSGTGADAAPYFRIFNPYTQAQKF 412
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
DP+G Y+R+W+PEL L + P +A L+AAG+ LG YP P+V A+ +
Sbjct: 413 DPDGAYIRKWVPELKDLRAPQLFAPQDASPMDLRAAGVRLGETYPLPMVDHQTARKK 469
>gi|170780895|ref|YP_001709227.1| deoxyribodipyrimidine photolyase [Clavibacter michiganensis subsp.
sepedonicus]
gi|169155463|emb|CAQ00571.1| putative deoxyribodipyrimidine photolyase [Clavibacter
michiganensis subsp. sepedonicus]
Length = 508
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 182/502 (36%), Positives = 263/502 (52%), Gaps = 40/502 (7%)
Query: 5 GCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYP-GRVSRWWLKHSLSHL 63
G +IVW R DLRV DNPA+ A V G I V EE P G +RWWL SLS L
Sbjct: 22 GPTIVWLRDDLRVADNPAMHAAVERGEPIVVLYVLDEESAGIRPLGGAARWWLHMSLSRL 81
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
SLR LG+ LV +R + + ++V+ GA + +N Y + D K+ L +G
Sbjct: 82 GESLRGLGSPLVLRRGK-AADVVDDLVREVGAGAVLWNRRYGGAEIAVDTAIKKDLGDRG 140
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWE---------KCLSMPFDPDAPLLPPKR 174
+ VRSF LL EPW V + QG+PF + FW+ K P +AP P+
Sbjct: 141 LDVRSFQGSLLVEPWTVVNKQGEPFRVYTPFWKTAQDREEPRKPFPAPDALEAPRKAPRS 200
Query: 175 INSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRK 234
+ D P+ + A L A PG + + L F++ L +Y+ R +
Sbjct: 201 DDLDDWGLLPT---------KPDWAAGLREACDPGEAAGLQRLEDFVHHELEDYAAQRDE 251
Query: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNL--FLKSIGLREY 292
+ TTS LS +L +GEVS +V+H V+ G K G + VN FL +G RE+
Sbjct: 252 PAAMTTSRLSAYLRWGEVSPFQVWHRVQ------RTRGKKVGGDEVNATKFLSELGWREF 305
Query: 293 SRYMSFNHPYSHERPLLGHLKFFSWVVDE---GYFKAWRQGRTGYPLVDAGMRELWATGW 349
S ++ ++ P R + F W DE AW++G TG PLVDAGMR LW G
Sbjct: 306 SYHLLYHQPDLATRNFVPRFDAFPW--DEPRDDTLGAWQRGETGVPLVDAGMRALWKDGH 363
Query: 350 LHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRI 409
LH+R+R+VV+SF +K L + WR G ++FWDTL+DAD ++A WQ+++G+ D + R+
Sbjct: 364 LHNRVRMVVASFLIKNLLIDWRHGEQWFWDTLVDADAANNAASWQWVAGSGADAAPYFRV 423
Query: 410 DNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELG-------SN 462
NP +G KFDP+GEY+R ++PELA P + +H PW A ++ +A + +
Sbjct: 424 FNPVLQGQKFDPSGEYIRSYVPELAHAPRDVVHEPWKAQGDLVASAEDDADASADGGLAA 483
Query: 463 YPFPIVRIDAAKCRLDEALSEM 484
YP PIV + ++ R A E+
Sbjct: 484 YPSPIVDLKESRQRALAAYDEI 505
>gi|153007684|ref|YP_001368899.1| deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi ATCC
49188]
gi|151559572|gb|ABS13070.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi ATCC
49188]
Length = 484
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 167/471 (35%), Positives = 250/471 (53%), Gaps = 21/471 (4%)
Query: 7 SIVWFRRDLRVEDNPAL-AAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VW R DLR+ DNPAL AA G + AV++ E PG RWWL SL +
Sbjct: 21 ALVWLRNDLRINDNPALDAAAETGGHITAVYVHETVAE-IRAPGCAVRWWLDQSLEAIRK 79
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L G L+ + + D L +++ T+LF+N Y P D K L G
Sbjct: 80 QLADRGIELLIE-TGDPRDILPQLIAKLAVTELFWNRRYAPAEREFDANLKAQLKESGTG 138
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
V SF +LL EPW++ A P+ F F K L P PL + C S
Sbjct: 139 VTSFPGNLLLEPWELKTASDTPYQVFTPF-AKALRHHHIP-RPLSRRQWDIKPTQETCYS 196
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
+ + G W+ G A LT F+ L Y+++R TS LSP
Sbjct: 197 PNVPAWAKKFDG-------LWNIGEDAARDCLTRFLENTLSTYTEDRDVPGIDGTSRLSP 249
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGN--KAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
HL FGE+S R+ ++ +++ +E + +AG E FL + R+++ + ++
Sbjct: 250 HLRFGEISARQAWYAT----LAFMDEHHSARAGGEK---FLSELIWRDFNYHQLYHRRDI 302
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
+ L +W D F+AWR+G+TG+P++DAGMR+LWATGW+H+R+R++V+SF
Sbjct: 303 SRHDMRDTLSGIAWRDDRAAFEAWRRGQTGFPIIDAGMRQLWATGWMHNRVRMLVASFLT 362
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WR G ++FWDTL+D D+ S+ WQ+++G D + R+ NP +G KFD G
Sbjct: 363 KNLLIDWRKGEEWFWDTLVDGDIASNPGSWQWVAGCGMDAAPYFRVFNPILQGEKFDAEG 422
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
+YVR W+PEL+ L +W+H P+ AP+ VL +AGI LGS YP PI+ + A++
Sbjct: 423 QYVRHWVPELSGLSNKWLHKPFEAPKDVLTSAGIALGSTYPKPIIDLQASQ 473
>gi|296116904|ref|ZP_06835507.1| deoxyribodipyrimidine photolyase [Gluconacetobacter hansenii ATCC
23769]
gi|295976544|gb|EFG83319.1| deoxyribodipyrimidine photolyase [Gluconacetobacter hansenii ATCC
23769]
Length = 513
Score = 276 bits (706), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 165/476 (34%), Positives = 239/476 (50%), Gaps = 18/476 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
IVWFR DLR+ DNPAL+ V +G V+ +F+ P+ + G ++WWL L L +
Sbjct: 33 IVWFRNDLRLSDNPALSHAVASGRPVLCLFVHDPQHAREHALGAAAQWWLDGGLRALHAD 92
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L +G L D+++ + + GA ++ +N YDPL D K L G+
Sbjct: 93 LARMGAVLHVA-CGDALALVPRMAAQAGAAEVVWNRRYDPLGRETDTAIKATLKHAGVIA 151
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS----GDMSR 182
SF A +LYEPW V G F F A+W + +P PL P +++ G
Sbjct: 152 HSFAAGVLYEPWTVRTRAGDAFRVFTAWW-RAARASGEPLPPLPAPGHVHAAVSPGAWEG 210
Query: 183 CPS--DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
C D L S + L AW PG + A L F++G L Y+ R + D T
Sbjct: 211 CCVGIDALRLVPVSPDWAGGLR-EAWQPGEAQARDRLHHFVDGGLGGYADARDRPDLPAT 269
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP L FG +S R+ +H G++ + FL +G R+++ + +
Sbjct: 270 SRLSPDLRFGHISPRQAWHAAVAAVRG--GAAGGMGEQDLEKFLSELGWRDFAVSLLYAQ 327
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P W D AW+QGRTGYP+VDAGMR+LW TGW+H+R+R++V+S
Sbjct: 328 PELVSCNFRTEFDAMPWRNDARDLCAWQQGRTGYPIVDAGMRQLWRTGWMHNRVRMIVAS 387
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L WR G +F DTL+DAD+ S+ + WQ+++G D + R+ NP + +FD
Sbjct: 388 FLTKHLLCDWRMGEAWFRDTLVDADIASNVINWQWVAGCGVDAAPYFRVFNPVLQARRFD 447
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
P+G YVRRW+PELA +PT +H PW + I YP PIV + + R
Sbjct: 448 PDGTYVRRWVPELAGVPTSCVHAPWTCDPA------IRARVAYPSPIVDLQGGRAR 497
>gi|337755263|ref|YP_004647774.1| deoxyribodipyrimidine photolyase [Francisella sp. TX077308]
gi|336446868|gb|AEI36174.1| Deoxyribodipyrimidine photolyase [Francisella sp. TX077308]
Length = 468
Score = 276 bits (705), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 167/488 (34%), Positives = 253/488 (51%), Gaps = 41/488 (8%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
+ +I WFR+DLR+ DNPAL +A I +FI +E G S+ WL HSL+
Sbjct: 2 SKKIAIHWFRQDLRLADNPALHQASQADETITIFILDENQE----IGGASKLWLHHSLNS 57
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L+ +SL L R + + + ++VK T ++N YD S+ RD + K+ L Q
Sbjct: 58 LN---KSLDNRLHFFRG-NPLKIIKKLVKENNITDFYWNRCYDKYSIDRDTQIKQFLQEQ 113
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
I + SFN LL EPW G + + F+++ L+ ++ S
Sbjct: 114 DINISSFNGSLLIEPWQCKKDDGTHYKVYTPFYKE-----------LIKIRKYRSNIAKP 162
Query: 183 CPSDTLVFEDESEKGSNALL---------ARAWSPGWSNADKALTTFINGPLIEYSKNRR 233
C + E ++ S LL W G + + L F++ + EY R
Sbjct: 163 CFNSLEKLETAADLSSLKLLEPKLSWQNIIDQWQIGEVASHQILEEFLDSKVKEYKTARD 222
Query: 234 KADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYS 293
+ +TS LSP+LHFGE+S ++F+ V+ NE + F+K + R++S
Sbjct: 223 FMSTDSTSKLSPYLHFGEISPNQIFNAVQSLDYIGNNEEH---------FIKELVWRDFS 273
Query: 294 RYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDR 353
Y + +P H + + F W D K W+ G TG P+VDAGMRELW TG++H+R
Sbjct: 274 YYQIYYYPELHNKNIDQKFDSFEWDNDPTLLKKWQTGHTGIPIVDAGMRELWQTGYMHNR 333
Query: 354 IRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQ 413
+R++V+SF +K + W++G K+F+DTL DAD S+ WQ+++G D + RI NP
Sbjct: 334 VRMIVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPV 393
Query: 414 FEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAA 473
+ KF+ EY+R+++PEL LP + I PW A E VLQ AG++LG NYP P+V D
Sbjct: 394 LQAEKFEA-FEYIRKYVPELKFLPDKLIAKPWEASELVLQEAGVKLGDNYPKPVV--DLK 450
Query: 474 KCRLDEAL 481
K R D+AL
Sbjct: 451 KSR-DKAL 457
>gi|404317161|ref|ZP_10965094.1| deoxyribodipyrimidine photo-lyase [Ochrobactrum anthropi CTS-325]
Length = 468
Score = 275 bits (704), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 162/471 (34%), Positives = 252/471 (53%), Gaps = 21/471 (4%)
Query: 7 SIVWFRRDLRVEDNPAL-AAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VW R DLR+ DNPAL AA G + AV++ E PG +RWWL SL +
Sbjct: 5 ALVWLRNDLRINDNPALDAAAETGGHITAVYVHETVAE-IRAPGGAARWWLDQSLEAIRK 63
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L G L+ + + D L +++ T+LF+N Y P D + K L G
Sbjct: 64 QLADRGIELLIE-TGDPRDILPQLIAKLAVTELFWNRRYAPAEREFDAKLKSQLKESGTG 122
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
V SF +LL EPW++ A P+ F F K L + P+ ++ + P+
Sbjct: 123 VTSFPGNLLLEPWELKTASDTPYQVFTPF-AKALRLHN-------VPRPLSRRQWNVKPT 174
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
+ + W+ G A L F+ L Y+++R TS LSP
Sbjct: 175 QEAHYAPNVPAWAEKFDG-LWNIGEDAARDCLPRFLESTLSTYTEDRDVPGIDGTSRLSP 233
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGN--KAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
HL FGE+S R+ ++ +++ +E + +AG E FL + R+++ + ++
Sbjct: 234 HLRFGEISARQAWYAT----LAFMDEHHSARAGGEK---FLSELIWRDFNYHQLYHRRDI 286
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
+ L +W D F+AWR+G+TG+P++DAGMR+LWATGW+H+R+R++V+SF
Sbjct: 287 SRHDMRDTLSGIAWRDDRAAFEAWRRGQTGFPIIDAGMRQLWATGWMHNRVRMLVASFLT 346
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WR G ++FWDTL+D D+ S+ WQ+++G D + R+ NP +G KFD G
Sbjct: 347 KNLLIDWRKGEEWFWDTLVDGDIASNPGSWQWVAGCGMDAAPYFRVFNPILQGEKFDAEG 406
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
+YVR W+PEL+ L +W+H P+ AP+ VL +AGI LGS YP PI+ + A++
Sbjct: 407 QYVRHWVPELSGLSNKWLHKPFEAPKDVLTSAGIALGSTYPKPIIDLQASQ 457
>gi|330991596|ref|ZP_08315547.1| Cryptochrome-2 [Gluconacetobacter sp. SXCC-1]
gi|329761615|gb|EGG78108.1| Cryptochrome-2 [Gluconacetobacter sp. SXCC-1]
Length = 465
Score = 275 bits (703), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 168/485 (34%), Positives = 238/485 (49%), Gaps = 37/485 (7%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
MS +I+WFR DLR+ DNPAL+ +G VI +++ P PG +RWWL +L
Sbjct: 1 MSQSAPTIMWFRDDLRLADNPALSDAAASGPVICLYVHDPA----LAPGSAARWWLHGAL 56
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+ L+ LR+ G L + + +L + + GA + +N Y + D R K AL
Sbjct: 57 TALEDDLRARGGRLCIM-AGPAWQCVLRLARQAGAGAVVWNRRYGGAARQVDARIKLALK 115
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDA---------PLLP 171
G+ RS ++L+EPW V QG PF + +W +M LP
Sbjct: 116 DMGVQARSHRGNMLHEPWQVRTRQGAPFRVYTPWWRAVRAMGAPLPPLPVPAALGFAALP 175
Query: 172 PKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKN 231
P + G +S + +G L W PG A L TF+ L Y++
Sbjct: 176 PA-VEDGLVSLSALGLQPTRPDWAQG----LRDTWQPGEQAAHARLATFMATRLPGYARL 230
Query: 232 RRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLRE 291
R TS LSP L FG +S R+++H V E D FL +G R+
Sbjct: 231 RDLPARPATSGLSPCLRFGHISPRQIWHAV---------EAQGDVDADGMCFLSEVGWRD 281
Query: 292 YSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLH 351
++ F+ P R L W D +AW+QGRTGYP+VDAGMRELW TGW+H
Sbjct: 282 FAHATLFDCPDMATRSLRPEYDRMPWRTDPAGLRAWQQGRTGYPIVDAGMRELWHTGWMH 341
Query: 352 DRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDN 411
+R+R++V+SF K L L WR G ++F DTL+DAD S+ WQ+++G D + RI N
Sbjct: 342 NRVRMIVASFLTKHLLLDWRAGERWFADTLVDADGASNPFNWQWVAGCGLDAAPYFRIFN 401
Query: 412 PQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRID 471
P +G KFDP G+YVRRW+PE+A L +H PW P + YP P+V +
Sbjct: 402 PVLQGEKFDPEGDYVRRWVPEIAHLAGRAVHTPWKFP---------HVHRGYPAPVVDLA 452
Query: 472 AAKCR 476
+ R
Sbjct: 453 DGRAR 457
>gi|189502200|ref|YP_001957917.1| hypothetical protein Aasi_0813 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497641|gb|ACE06188.1| hypothetical protein Aasi_0813 [Candidatus Amoebophilus asiaticus
5a2]
Length = 486
Score = 275 bits (702), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 158/467 (33%), Positives = 251/467 (53%), Gaps = 17/467 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I+ F ++LR D P L ++ +I +FI P+ G S+WWL S+
Sbjct: 7 ILVFYQNLRFHDQPLLLEVLQHTQPIIPIFINDPKVIERL--GEASQWWLYQSIRAFKQQ 64
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
+S + R+ DSV L ++++ T A +++ Y L D R E L GI +
Sbjct: 65 WKSAYNIELILRTGDSVRVLQQLLQETNANKIYLGKRYTKLEREIDERIYEELNRDGITI 124
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
+ FN LL+EP ++ + QG F F FW+ CL+ + D P P I +G SD
Sbjct: 125 KFFNTHLLFEPANIKNQQGNSFQIFTPFWKTCLTKTIEADLP--APDHIFNGYNQPINSD 182
Query: 187 TLVFEDESEKGSNALLARAWSPGWSNADKA----LTTFINGPLIEYSKNRRK-ADSATTS 241
L D S A R + W ++ A L F+ L Y+ NR A + +S
Sbjct: 183 DL--SDWKWGHSQAAWTRKLANHWHLSELAALNKLAIFLKNSLAGYNNNRDLIASPSFSS 240
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+L +G++S +K+F+ +V E + + N FLK IG RE+S Y+ ++HP
Sbjct: 241 QLSPYLRWGQISAKKIFN-----EVIHTMERDPTIQQDGNTFLKEIGWREFSYYLLYHHP 295
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
E PL + F + + + W++G TG+P++DAGMR+LW GW+ +R+R++V+SF
Sbjct: 296 SMQEVPLNKRFQDFPYENNLSLLEKWQKGTTGFPIIDAGMRQLWLEGWMPNRLRMIVASF 355
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
+K L + W++G +F DTL+DAD ++A WQ+++G D + RI NP +G KFD
Sbjct: 356 LIKDLLINWQFGQAWFIDTLVDADPANNANSWQWVAGCGTDASPYFRIFNPITQGKKFDS 415
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
G+Y+R+++PEL LPT++IH PW P ++ + + +G +YP PIV
Sbjct: 416 EGKYIRKYVPELKDLPTKYIHQPWEMPITLQEEYNVIIGKDYPHPIV 462
>gi|83718773|ref|YP_442347.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264]
gi|257138547|ref|ZP_05586809.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264]
gi|83652598|gb|ABC36661.1| deoxyribodipyrimidine photolyase [Burkholderia thailandensis E264]
Length = 486
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 195/483 (40%), Positives = 264/483 (54%), Gaps = 16/483 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFR DLRV D+PALA +G VI V+++ E G G +RWWL SL LD+
Sbjct: 10 AVVWFRDDLRVSDHPALARAAESGRPVIGVYVF-DERAGGRALGGAARWWLHGSLRALDA 68
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L LG LV R D + + V A GA +++N Y D+ + AL A+ +A
Sbjct: 69 ALAGLGGRLVLLRG-DEADTFVSFVAALGAGAVYWNRRYAFAQRALDNAVQTALDARRVA 127
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM----- 180
V +FNA LL+EP D+ + G+P+ F A+W L P PL P+R+N G +
Sbjct: 128 VETFNASLLFEPDDIVNGDGRPYQVFGAYWRAALRRG-APPPPLAAPRRLNGGALPEALA 186
Query: 181 -SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
R D L E + L AW G A L F++ L Y+ R + A+
Sbjct: 187 RRRVELDALGLEPTRPDWAGGL-RDAWRFGEDAAHSLLRAFVDSRLGGYATERDRPGIAS 245
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP++ FG +SVR+++ A+ A ++ FL +G RE+ +
Sbjct: 246 TSRLSPYVRFGNLSVRQIWQAAVD-----AHAHRAATQADLDKFLSELGWREFCWAQLYR 300
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P R L L W D AWR+G TGYP VDAGMRELWATGW+H+R R+V +
Sbjct: 301 FPDLPRRNLRHTLDGMPWRDDPAGLAAWRRGATGYPFVDAGMRELWATGWMHNRARMVCA 360
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L + WR G +FWDTL+DAD S+A WQ+++G D + RI NP +G KF
Sbjct: 361 SFLVKHLLIDWREGEAWFWDTLVDADAASNAANWQWVAGCGADAAPYFRIFNPVAQGKKF 420
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP+G YVRRW+PELA LP IH PW AP + L AAG+ LG YP P+V DAA+ R +
Sbjct: 421 DPDGAYVRRWVPELAGLPPAAIHEPWAAPPAQLAAAGVRLGDTYPVPVVAHDAARRRALD 480
Query: 480 ALS 482
A +
Sbjct: 481 AFA 483
>gi|428173312|gb|EKX42215.1| hypothetical protein GUITHDRAFT_74169 [Guillardia theta CCMP2712]
Length = 523
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 165/502 (32%), Positives = 265/502 (52%), Gaps = 44/502 (8%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
IVWFR+DLR+ DNPAL ++G VI VF+ +++ + G +++WL SL+ L S
Sbjct: 23 IVWFRQDLRLHDNPALLFAAQSGRNVIPVFVHVEQDDENWLLGGAAKFWLHQSLTKLSES 82
Query: 67 L-RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L R G+ L+ + +D+++ LL+V+ TGA+ L FN +Y+P L RD + E LT G+
Sbjct: 83 LERKYGSKLIIRAGSDTLAGLLDVMMETGASTLCFNRVYEPWKLARDAKIVETLTMNGLT 142
Query: 126 VRSFNADLLYEPWDV----NDAQGQPFATFAAFWEKC----LSMPFDPDAPLLPPKRINS 177
S+ A +L+EP +V + F + F C +S P P L PP R
Sbjct: 143 CSSYKAVVLFEPLEVVPDSKEGLMYGFGSVGFFLNACDGKEISDPLPPPEQLRPP-RAWP 201
Query: 178 GDMSRCPSDTLVFEDESEKGSNAL-----LARAWSPGWSNADKALTTFINGPLIEY-SKN 231
G +S D ++ + + + W G A KAL F+ + +
Sbjct: 202 GSLS--IGDLRLYVMPCRRNGQVVDWAKGMREFWEFGEEGALKALEEFVRFGCHHFEGRQ 259
Query: 232 RRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLRE 291
R +AD T+ +SP++ FGE+S R++FH + ++ FL+ + R+
Sbjct: 260 RFRADRKYTAVISPYVRFGELSPRRIFHEIVVRH-----------RYKAKTFLRRLAWRD 308
Query: 292 YSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLH 351
+ + + P + PL +W D+ +AW++GRTG+PLVDA MR+LW TGW+
Sbjct: 309 LAYWCLWKFPTMADHPLRPQYAHQTWDYDQKQLRAWQRGRTGFPLVDAAMRQLWVTGWMP 368
Query: 352 DRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDN 411
+ +R VV+ F ++ + + W G K+F DTL+DAD+ +A WQ + D F + +
Sbjct: 369 NYMRHVVAGFLIEHMNMHWVDGEKWFHDTLVDADVAINAYMWQNGGHSGLDQWNF--VMH 426
Query: 412 PQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV--- 468
P F DP G+YVRRW+PEL++LP E+IH PW AP ++L ++G+ LG NYP I+
Sbjct: 427 PVFAAKSCDPEGDYVRRWVPELSKLPPEYIHCPWEAPVTLLASSGVALGRNYPHRIIADL 486
Query: 469 ---------RIDAAKCRLDEAL 481
++A +C + +A+
Sbjct: 487 EGARTRSLAAVNAVRCGVGKAM 508
>gi|50954649|ref|YP_061937.1| DNA photolyase [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50951131|gb|AAT88832.1| DNA photolyase [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 466
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 159/429 (37%), Positives = 229/429 (53%), Gaps = 13/429 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFR DLR+ DNPAL A +G VI +++W + G PG +RWWL HSL+ L+
Sbjct: 11 AVVWFRDDLRLADNPALHAAAESGRPVICLYVWDEDSPGLRSPGEAARWWLHHSLTSLEE 70
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
S+ G++L R+ + L EV+ A +F+N Y D R K A G+
Sbjct: 71 SIGRAGSALAI-RTGPAERVLAEVLAEVDAGAVFWNRRYGEGERRVDERVKSAARDTGLV 129
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSG-DMSRCP 184
SF A+LL+EPW V G F+ + FW CL+ P +P PL +R+ G +
Sbjct: 130 ANSFGANLLFEPWTVRTGSGTAFSVYTPFWRACLARP-EPRRPLPALRRLRPGPSLPSLE 188
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
D L ++ L W PG A + L+ F+ L Y R A TS LS
Sbjct: 189 LDELKLLPVHPDWADGL-RETWKPGERAAHRELSAFLGEGLARYRAERDVPGIAATSRLS 247
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
P L +GE+S +V+H A +++ E FL +G RE++ + F P
Sbjct: 248 PRLRWGELSPFQVWHAT-------AAARDRSTAEGAATFLSELGWREFAYHTYFERPALA 300
Query: 305 ERPLLGHLKFFSWV-VDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
+ F W + +AW+QGRTG PLVDAGMRELW TG +H+R+R+V +SF
Sbjct: 301 TVNIHREYDSFPWPRLHPSALRAWQQGRTGVPLVDAGMRELWRTGVMHNRVRMVAASFLT 360
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WR G ++FWDTL+DAD S+ WQ+++G+ D + R+ NP+ + KFDP+G
Sbjct: 361 KNLLIDWRRGEQWFWDTLVDADPASNPFNWQWVAGSGADTAPYFRVFNPEVQREKFDPHG 420
Query: 424 EYVRRWLPE 432
+YVRRW+PE
Sbjct: 421 DYVRRWVPE 429
>gi|90419365|ref|ZP_01227275.1| putative deoxyribodipyrimidine photolyase [Aurantimonas
manganoxydans SI85-9A1]
gi|90336302|gb|EAS50043.1| putative deoxyribodipyrimidine photolyase [Aurantimonas
manganoxydans SI85-9A1]
Length = 483
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 162/480 (33%), Positives = 254/480 (52%), Gaps = 12/480 (2%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VW R DLR++DNPALA +G V+ + + E +G G +WWL HSL
Sbjct: 11 VVWLRDDLRLDDNPALAEAADSGRPVVPLVVLDEESDGVRSLGGTHKWWLHHSLQCFGKD 70
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L G L+ +R S ++++V++TGAT L N YD S D A EA + V
Sbjct: 71 LADKGAPLILRRGKAS-EHVVDIVESTGATTLLMNRRYDQASRAVDD-AVEAALGSDVEV 128
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
+ F A++L++P V G + + FW+ +P P+ PP ++ S D + SD
Sbjct: 129 QRFTANILHDPDKVRTKTGGWYKVYTPFWKNLAED--EPRDPIDPPDKLASLD-DQPRSD 185
Query: 187 TLVFED--ESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
L D + + +A W G + A + F + L +Y R + TS +S
Sbjct: 186 RLEEWDLLPTRPDWSGGIAAFWKVGEAAAHERFEEFSDEWLNDYPDGRDRPGDDATSRMS 245
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
PHL +GE+S +++H+ + AN +++ F K + R+++ ++ N
Sbjct: 246 PHLRWGEISPYRLWHMAE----ACANRRKTIPGDALKTFKKELVWRDFNYHLLHNFGPLA 301
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
+ F W + +AW++G TGYP+VDAGMR+LW GW+H+R+R++V SF K
Sbjct: 302 TQNYNDRFDAFPWRSAKSELRAWQKGLTGYPIVDAGMRQLWECGWMHNRVRMIVGSFLTK 361
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L + WR G ++FWDTL+D D+ S+ WQ+I G+ D + + R+ NP + +FD +G+
Sbjct: 362 DLLIDWREGERWFWDTLVDGDIASNTAQWQWIGGSGADAQPYFRVFNPVTQSQRFDGDGD 421
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
Y+RR++PELA LP + +H PW A L AG+ELG YP PIV A+ R +A E+
Sbjct: 422 YIRRFVPELADLPDKVLHAPWEADADTLAEAGVELGKTYPKPIVDHGTARKRALDAYGEV 481
>gi|410944062|ref|ZP_11375803.1| deoxyribodipyrimidine photolyase [Gluconobacter frateurii NBRC
101659]
Length = 483
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 173/480 (36%), Positives = 254/480 (52%), Gaps = 29/480 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
IVWFR DLR+ D+ AL A + G +I +++ E + G SRWWL +L+ L +
Sbjct: 14 IVWFREDLRLSDHLALQAALATGQPLICLYVLDDETPALHSLGGASRWWLHGALADLRRT 73
Query: 67 L-RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L R GT L+ K S + + + ++ + TGA ++++H +D R AL QG A
Sbjct: 74 LGRHQGTLLMLKGSAEKL--VPQLARETGAQSVYWHHRLHQKEREQDERIAIALKTQGAA 131
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP- 184
+L +P V +G+ + F FW+ + D PL P ++S P
Sbjct: 132 AEGSWGTVLLDPAQVQTKEGRFYQVFTTFWKAFQAQ--DVPEPLGSP-----ANLSFYPL 184
Query: 185 SDTLVFE---DES-----EKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SD+L+ + DES A L +W PG A + L F+ Y K R +
Sbjct: 185 SDSLLAQYWLDESTLLPTHPDWAAGLRASWEPGEKEAHEHLEDFVRHDCSRYGKGRDELS 244
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LSP+L G +S R+++ ++ K A DE +FL IG RE+++Y
Sbjct: 245 REGTSRLSPYLASGAISPRQIWAALQKK---------GAHDEGARIFLSEIGWREFAKYT 295
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
F+ + L + W E AW+QGRTG P+VDAGMR+LW TGW+H+R R+
Sbjct: 296 LFHQARLPDTSLGQKFEKMPWRKSEKDLLAWQQGRTGVPIVDAGMRQLWKTGWMHNRARM 355
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+V SF K L + WR G +F DTL+DAD S+A+ WQ+++GT D F RI NP +G
Sbjct: 356 IVGSFLTKHLLIDWREGEAWFRDTLVDADWASNAMNWQWVAGTGIDASPFFRIFNPTRQG 415
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFDP+G+Y+R+W+PEL +L + + PWNA E L+ AGI LG YP P+V + + R
Sbjct: 416 VKFDPDGDYIRQWVPELKKLSGKDLFEPWNAKEGDLERAGITLGKTYPRPVVDLKEGRDR 475
>gi|206560613|ref|YP_002231378.1| putative DNA photolyase [Burkholderia cenocepacia J2315]
gi|198036655|emb|CAR52553.1| putative DNA photolyase [Burkholderia cenocepacia J2315]
Length = 494
Score = 273 bits (697), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 179/469 (38%), Positives = 247/469 (52%), Gaps = 13/469 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFR DLRV D PAL V +G ++ VF+ G +RWWL SL+ LD+
Sbjct: 12 AIVWFRDDLRVTDQPALTLAVESGRPLVCVFVDDTGAGAGPALGGAARWWLHGSLAGLDA 71
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L G L+ R D+ + +V+ TGA +++N Y D K +L A+G+A
Sbjct: 72 ALARHGGRLLLLRG-DAQREIERLVRDTGAAAVYWNRRYAQPQRDADAALKTSLKARGVA 130
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
V S N LL EPW+V G P+ F A+ + APL P +I +
Sbjct: 131 VESSNGSLLNEPWEVLTGSGGPYQVFTAY-WRAARRDRAVAAPLPAPGQIVFHSWPKAVR 189
Query: 186 DTLVFEDESEKGSNAL-----LARAW-SPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
D + D +A L AW +P + A L F+ L Y+ R + D
Sbjct: 190 DRALALDALALRPHAPDWAGGLRDAWPAPDEAGAHAQLDAFLTTSLAGYADARDRPDRPA 249
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP L FG VS R+V+H V+ + D+ FL +G RE+S + ++
Sbjct: 250 TSRLSPFLRFGNVSPRQVWHAVQGAASAGGAAYAADADK----FLSELGWREFSYTLLYH 305
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P W D +AW++GRTGYPLVDAG+RELW TGW+H+R+R+VV+
Sbjct: 306 FPTLATDNFRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMHNRVRMVVA 365
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF +K L + WR G +F DTL+DAD ++A WQ+++G D + RI NP +G KF
Sbjct: 366 SFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFRIFNPVAQGQKF 425
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
DP+G YVRRW+PELA L IH PW A L+AAGI LG +YP P+V
Sbjct: 426 DPDGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGIRLGIDYPAPLV 474
>gi|220913214|ref|YP_002488523.1| deoxyribodipyrimidine photo-lyase [Arthrobacter chlorophenolicus
A6]
gi|219860092|gb|ACL40434.1| Deoxyribodipyrimidine photo-lyase [Arthrobacter chlorophenolicus
A6]
Length = 475
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 174/488 (35%), Positives = 249/488 (51%), Gaps = 31/488 (6%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYP-GRVSRWWLKHSLSHLD 64
S+VW R DLR++DNPAL+ GA + V EE P G SRWWL HSL+ L
Sbjct: 7 TSLVWLRDDLRLDDNPALSEAAHLGAPMTVVYVLDEESPGVRPLGGASRWWLHHSLAALA 66
Query: 65 SSLRSLGTSLVTKR--STDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+ L + G+ LV +R + D +SSL T A LF+N Y D KE
Sbjct: 67 AVLEAKGSRLVLRRGKAADVISSL---AAQTHAGHLFWNRRYGGPERDIDAGLKEWAAGN 123
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSM-----PFDPDAPLLPPKRINS 177
GI SF A+LL+EPW + G P+ ++ FW CL+ P D L P
Sbjct: 124 GIEASSFQANLLFEPWTIKTGAGGPYKVYSPFWRACLAAGDIRDPLDIPKDLPEPAASGR 183
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
G + + S S L A W PG A LT F++GP+ +Y R +
Sbjct: 184 GLPASDSLGSWKLLPTSPDWSGGL-AETWVPGEKGAVDRLTDFLDGPIEDYGTGRNIPGT 242
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
TS LSP+L FGEVS +V+ +R + + V +F +G RE++ ++
Sbjct: 243 EGTSRLSPYLRFGEVSPFRVWREIRRRH-------PRQVPADVGIFRSELGWREFNWHLL 295
Query: 298 FNHPYSHERPLLGHLKFFSWV-VDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
+++P R + F W + AW+QGRTGYPLVDAGMR+LW TGW+H+R+R+
Sbjct: 296 YHNPELATRSFRPDFEKFEWASLSRKELAAWQQGRTGYPLVDAGMRQLWQTGWMHNRVRM 355
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+SF VK L WR G ++FWDTL+DAD ++ WQ+++G+ D + RI NP +
Sbjct: 356 AAASFLVKNLLTDWRVGEQWFWDTLVDADAANNPANWQWVAGSGADASPYYRIFNPVTQS 415
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFD G+Y+RR++PE+A L + IH PW A YP P+V + ++ R
Sbjct: 416 KKFDAGGDYLRRFIPEIAGLEGKAIHEPWTAEP-----------DGYPQPLVELPESRER 464
Query: 477 LDEALSEM 484
+A ++
Sbjct: 465 ALDAYQKL 472
>gi|402566030|ref|YP_006615375.1| deoxyribodipyrimidine photo-lyase [Burkholderia cepacia GG4]
gi|402247227|gb|AFQ47681.1| Deoxyribodipyrimidine photo-lyase [Burkholderia cepacia GG4]
Length = 492
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 182/488 (37%), Positives = 250/488 (51%), Gaps = 19/488 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFR DLRV D PAL V +G ++ VF+ E G +RWWL SL+ LD+
Sbjct: 10 AIVWFRDDLRVTDQPALTRAVASGRPLVCVFVDDTGEGAGRPLGGAARWWLHGSLAALDA 69
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L G L+ R D+ + V TGA +++N Y D K +L A+G+
Sbjct: 70 ALARHGGRLLLLRG-DARREIERVAHDTGAAAVYWNRRYAQPQRDADAALKASLKARGLE 128
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
V S N LL EPW+V G PF F A+W + + DAPL P RI P+
Sbjct: 129 VESSNGSLLNEPWEVLTGAGTPFQVFTAYW-RAVRRDRTVDAPLPEPARIA---FHPWPA 184
Query: 186 DTLVFEDESEKGSNALLARAWSPG----WSNADKA-----LTTFINGPLIEYSKNRRKAD 236
D + + A W+ G W D+A L F L Y+ R + D
Sbjct: 185 DVRERALALDALALRPHAPDWAGGLRDAWPTPDEAGAHARLDAFSVESLAGYADTRDRPD 244
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LSP L FG +S R+V+ V+ + ++ FL +G RE+S +
Sbjct: 245 QPATSRLSPFLRFGNLSPRQVWQAVQGAAQADGAACAAGAEK----FLSELGWREFSYTL 300
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
++ P W D +AW++G TGYPLVDAGMRELW TGW+H+R+R+
Sbjct: 301 LYHFPALATDSFRAQFNAMPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTGWMHNRVRM 360
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
VV+SF VK L + WR G +F DTL+DAD ++ WQ+++G D + RI NP +G
Sbjct: 361 VVASFLVKHLLIDWRAGEAWFHDTLVDADPANNPANWQWVAGCGADAAPYFRIFNPVMQG 420
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFDP+G YVRRW+PELA L IH PW A L AAG+ L +YP P+V A+ R
Sbjct: 421 RKFDPHGAYVRRWVPELAGLDAATIHAPWEASPVELAAAGVRLDIDYPAPLVDHAGARGR 480
Query: 477 LDEALSEM 484
+AL+ +
Sbjct: 481 ALDALAAL 488
>gi|325963959|ref|YP_004241865.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter
phenanthrenivorans Sphe3]
gi|323470046|gb|ADX73731.1| deoxyribodipyrimidine photo-lyase type I [Arthrobacter
phenanthrenivorans Sphe3]
Length = 478
Score = 271 bits (694), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 174/487 (35%), Positives = 244/487 (50%), Gaps = 26/487 (5%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
SIVW R DLR++DNPALAA V G + V+I + EG G SRWWL HSL+ L
Sbjct: 7 TSIVWLRDDLRLDDNPALAAAVDLGLPLTVVYILDEDSEGVRPLGSASRWWLHHSLASLA 66
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
SSL + G+ L+ +R + L ++ AT A LF+N Y D K GI
Sbjct: 67 SSLEASGSRLLLQRGP-AEPILKDLAAATNAGHLFWNRRYGLPERTVDAAVKAWAGENGI 125
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMP--FDPDAPLLPPKRINSGDMSR 182
S+ A+LL+EPW + G P+ F FW CL+ DP + +G
Sbjct: 126 EALSYQANLLFEPWTIRTGAGGPYKVFTPFWRACLASGDVRDPLSAPPQLPPPPAGKTGS 185
Query: 183 CPS----DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
P+ +T S S L A+ W PG A + L F+ G +Y R
Sbjct: 186 GPAGDALETWRLFPSSPDWSGGL-AKTWEPGEEGARQRLEDFLEGSAQDYGTGRNIPGVE 244
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LSPHL FGEVS +V+ +R + + V +F +G RE+ ++ +
Sbjct: 245 GTSRLSPHLRFGEVSPFRVWREIRGRF-------PREVPADVGIFRSELGWREFCWHLLY 297
Query: 299 NHPYSHERPLLGHLKFFSW-VVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
+P R F W + AW+QGRTGYP VDAGMR+LW TGW+H+R+R+
Sbjct: 298 TNPDLATRNFRPEFDRFEWEKPGKDELAAWQQGRTGYPFVDAGMRQLWQTGWMHNRVRMA 357
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
+SF VK L WR G +FWDTL+DAD S+ WQ+++G+ D + RI NP +
Sbjct: 358 AASFLVKNLLADWRTGEAWFWDTLVDADAASNPANWQWVAGSGADASPYYRIFNPVTQSK 417
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
KFD G Y+R+++PELA L + IH PW A + + YP P+V + ++ R
Sbjct: 418 KFDAAGNYLRQYIPELAGLEAKAIHEPWKAADGL---------HGYPRPLVDLPGSRERA 468
Query: 478 DEALSEM 484
A ++
Sbjct: 469 LAAYQKL 475
>gi|239835007|ref|ZP_04683335.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium LMG
3301]
gi|444309630|ref|ZP_21145264.1| deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium M86]
gi|239823070|gb|EEQ94639.1| Deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium LMG
3301]
gi|443487021|gb|ELT49789.1| deoxyribodipyrimidine photo-lyase [Ochrobactrum intermedium M86]
Length = 461
Score = 271 bits (694), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 158/466 (33%), Positives = 248/466 (53%), Gaps = 21/466 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPEEEGPYY--PGRVSRWWLKHSLSHL 63
++VW R DLR+ DNPAL A + GA+ A+F+ E P PG RWWL+ SL L
Sbjct: 5 ALVWLRNDLRLADNPALHAAFKLGGAITALFV---HESNPQLRDPGAAVRWWLEQSLDLL 61
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
SL L+ ++++++ ++++ +F+N Y P D K L +G
Sbjct: 62 ARSLNERNIELIVA-DGEALNTIEQLIEENNFDTVFWNRRYAPQEREVDAVIKSGLKDKG 120
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
+ V SF +LL EPW++ G + F + + PL P + + + +
Sbjct: 121 LRVESFAGNLLVEPWEIKSGNGGSYQVFTPYAKSLRQHGVSRPLPL-PDRSVETTTVKHT 179
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
P ++ E + ++ W G + A L F + + +Y+ +R + D TS L
Sbjct: 180 PKQ----KNYKEAVWSRKMSGLWMIGEAAAIDQLYHFFDTTIRDYAGDRDRPDLDGTSKL 235
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKA--GDESVNLFLKSIGLREYSRYMSFNHP 301
S HL FGE+S R+V+H VS ++ + G + FL + R++ + + P
Sbjct: 236 SAHLRFGEISPRQVWH----ATVSLMDQDHSTVPGGQK---FLSELIWRDFHYHQLYYRP 288
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
E + L W + +WR+G+TG P++DAGMR+LWATGW+H+R+R++V+S
Sbjct: 289 DIAEIDMRDTLANTRWQSNSVGINSWRRGKTGIPIIDAGMRQLWATGWMHNRVRMLVASA 348
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K +Q+ WR G K+FWDTL+DAD+ S+ WQ+++G D + R+ NP +G KFD
Sbjct: 349 LCKNMQIDWREGEKWFWDTLVDADVASNPGNWQWVAGCGMDAAPYFRVFNPVLQGEKFDT 408
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPI 467
G YVR+W+PE+A LP WIH P+ AP +VL+ AG+ LG YP PI
Sbjct: 409 KGVYVRKWVPEIAALPDCWIHKPFAAPPAVLREAGVVLGQTYPLPI 454
>gi|424894750|ref|ZP_18318324.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393178977|gb|EJC79016.1| deoxyribodipyrimidine photolyase [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 482
Score = 271 bits (694), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 170/475 (35%), Positives = 244/475 (51%), Gaps = 20/475 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I+WFR+DLR++DN AL A +G VI ++I + G G WWL HSL LD +
Sbjct: 10 ILWFRKDLRLDDNQALNAAHLSGRPVIPLYI-SEPAAGAGPLGAAQAWWLHHSLEALDRA 68
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
LR LV S +++ L + +GA +F+N YDP D R K L Q I V
Sbjct: 69 LRKRQGQLVLA-SGEALEVLRAFISESGAAAVFWNRRYDPSCTTIDIRIKHELKKQAIEV 127
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKC-----LSMPFDPDAPLLPPKRINSGDMS 181
RSF LL+EP + G P+ + FW L++P + L ++ +
Sbjct: 128 RSFGGQLLHEPSRLMTGSGTPYRVYTPFWRALEGAGELALPLEAPVKLQLAAQLPKSE-- 185
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
R S L+ ++ W+PG L F+ L Y +NR TS
Sbjct: 186 RLESWKLL---PTKPDWARDFGDLWTPGEQGGRDKLRAFVEDTLDGYRENRDYPAKQATS 242
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSPHL GE+S +++ R + + F K I RE+S ++ F+ P
Sbjct: 243 MLSPHLALGEISPARIWDATR-------GLSKRVPAADIVHFRKEIAWREFSYHLLFHFP 295
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
F W + F+AW +G TGYP+VDAGMR+LW GW+H+R+R++V+SF
Sbjct: 296 RLASSNWNDRFDGFEWRNADEDFEAWCRGLTGYPIVDAGMRQLWRHGWMHNRVRMIVASF 355
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
+K L + WR G +F DTL+DAD ++A WQ+++G+ D F RI NP +G FDP
Sbjct: 356 LIKDLMVDWRRGEAWFRDTLVDADPANNAASWQWVAGSGADASPFFRIFNPVLQGQTFDP 415
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
+G+YVR +PEL L ++IH P+ AP+S+L AGI LG YP PIV +A+ R
Sbjct: 416 DGDYVRAHVPELRELAAKYIHRPFEAPKSMLDEAGITLGQTYPRPIVDHASARNR 470
>gi|115352268|ref|YP_774107.1| deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria AMMD]
gi|115282256|gb|ABI87773.1| deoxyribodipyrimidine photo-lyase type I [Burkholderia ambifaria
AMMD]
Length = 525
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 188/499 (37%), Positives = 264/499 (52%), Gaps = 23/499 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VWFR DLRV D PAL V +G ++ V++ + G +RWWL +L+ LD+
Sbjct: 35 AVVWFRDDLRVTDQPALTRAVASGRPLVCVYVDDTGDGAGRALGGAARWWLHGALAALDA 94
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L G L+ R D+ + +V TGA +++N Y D K +L A+G+
Sbjct: 95 ALARHGGHLLLLRG-DAQREIERIVHDTGAAAVYWNRRYAQPQRDADAALKASLKARGLE 153
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
V S N LL EPW+V G PF F A+W + + APL P+RI + P
Sbjct: 154 VESSNGSLLNEPWEVMTGAGTPFQVFTAYW-RAVRRDRTVMAPLPEPERI-----AFHPW 207
Query: 186 DTLVFEDESEKGSNALLARA--WSPG----WSNADKA-----LTTFINGPLIEYSKNRRK 234
V E + AL A W+ G W D+A L F++ L Y+ R +
Sbjct: 208 PAAVRERALALDALALRPHAPDWAGGLRDEWPAPDEAGAHARLDAFVHASLAGYADTRDR 267
Query: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSR 294
TS LSP L FG VS R+V+H V+ + ++ FL +G RE+S
Sbjct: 268 PGEPATSRLSPFLRFGNVSPRQVWHAVQGATQAGGAACAAGAEK----FLSELGWREFSH 323
Query: 295 YMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
+ ++ P W D +AW++G TGYPLVDAGMRELW TGW+H+R+
Sbjct: 324 VLLYHFPALATDNFRAQFDAMPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTGWMHNRV 383
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R+VV+SF VK L + WR G ++F DTL+DAD ++ WQ+++G D + RI NP
Sbjct: 384 RMVVASFLVKHLLIDWRAGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFRIFNPVT 443
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
+G KFDP GEYVRRW+PELA L IH PW A + L AAG+ LG +YP PIV D A+
Sbjct: 444 QGRKFDPQGEYVRRWVPELAGLDAAAIHAPWEASAAQLAAAGVRLGLDYPAPIVDHDGAR 503
Query: 475 CRLDEALSEMWQQEAASRA 493
R +AL+ + + AA R+
Sbjct: 504 RRALDALATLPKPGAAGRS 522
>gi|146340206|ref|YP_001205254.1| deoxyribodipyrimidine photo-lyase [Bradyrhizobium sp. ORS 278]
gi|146193012|emb|CAL77021.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 278]
Length = 415
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 153/403 (37%), Positives = 226/403 (56%), Gaps = 9/403 (2%)
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
++SLG+ LV +R + L ++ + T A+ +++N + + L G+A
Sbjct: 1 MQSLGSDLVIRRGP-AAQVLGQLARETNASAVYWNDVAQAGPRRVAASVEADLDHIGVAS 59
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS-GDMSRCPS 185
R F DLL +P ++ G+ F FW++ L++ DP PL P R+ D++
Sbjct: 60 RVFPDDLLVDPATMSGKDGRGPRVFTPFWKRVLAL-GDPPKPLPTPARLPMVPDVTGLTV 118
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
D L E + L A W G A + L +F+ + Y+ +R + D TS LSP
Sbjct: 119 DDLRLEPTKPDWAGGLRA-TWQAGERAAQQRLRSFLESTVSGYAADRDRPDIDATSRLSP 177
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
HL FGE++ R+++H R A E A + ++ FL IG RE+SR++ +N+P
Sbjct: 178 HLRFGEITPRQIWHAARF-----AAEERPAQAKGIDKFLSEIGWREFSRHLLYNNPDLAS 232
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
R L F WV D+ AW++GRTGYP+VDAG+RELW TG +H+R+R+V +S VK
Sbjct: 233 RNLQPSFDPFPWVQDDAALAAWQRGRTGYPIVDAGLRELWHTGSMHNRVRMVAASLLVKH 292
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
L + WR G ++FWDTL+DAD S+ WQ+++G+ D + R+ NP +G KFD NG Y
Sbjct: 293 LLIDWRQGEQWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPVLQGEKFDANGSY 352
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
VRRW+PELARLP IH PW A L AG+ LG +YP PI+
Sbjct: 353 VRRWVPELARLPAGVIHQPWAAKPLELAEAGVTLGRSYPTPII 395
>gi|367475309|ref|ZP_09474774.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 285]
gi|365272410|emb|CCD87242.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 285]
Length = 415
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 151/403 (37%), Positives = 222/403 (55%), Gaps = 9/403 (2%)
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
++SLG LV +R + + L ++ + T A +++N + R + AL G+
Sbjct: 1 MQSLGADLVIRRGP-AATVLSQLARETKAGAVYWNDVAQRGPRAVAERVEAALGEIGVTS 59
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS-GDMSRCPS 185
R F DLL +P ++ G+ F FW++ L++ DP PL P R+ ++
Sbjct: 60 RVFADDLLVDPAEMRGKDGRGPRVFTPFWKRVLAL-GDPPKPLPMPVRLPPVPGIASLAV 118
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
D L E + L A W G A + L F+ + Y+ +R + D TS LSP
Sbjct: 119 DELALEPTRPDWAGGLRA-TWQAGERAAQQRLNDFLTSSVGTYAADRDRPDVEATSRLSP 177
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
HL FGE+S R++FH R A E A + ++ FL +G RE+SR++ +N+P
Sbjct: 178 HLRFGEISPRQIFHAARF-----AAEERPALAKGIDKFLSEVGWREFSRHLLYNNPDLAT 232
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
R L F W D+ AW++G+TGYP+VDAGMRELW TG +H+R+R+V +S VK
Sbjct: 233 RNLQPTFDAFPWTQDDAALTAWQRGQTGYPIVDAGMRELWHTGSMHNRVRMVAASLLVKH 292
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
L + WR G ++FWDTL+DAD S+ WQ+++G+ D + R+ NP +G KFD +G Y
Sbjct: 293 LLIDWRQGEQWFWDTLVDADPGSNPASWQWVAGSGADAAPYFRVFNPVLQGEKFDASGSY 352
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
VRRW+PELARLP IH PW A L AG+ LG +YP P +
Sbjct: 353 VRRWVPELARLPASLIHQPWAAKPLELAEAGVTLGRSYPAPTI 395
>gi|444305910|ref|ZP_21141685.1| deoxyribodipyrimidine photo-lyase [Arthrobacter sp. SJCon]
gi|443481714|gb|ELT44634.1| deoxyribodipyrimidine photo-lyase [Arthrobacter sp. SJCon]
Length = 475
Score = 271 bits (692), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 175/489 (35%), Positives = 251/489 (51%), Gaps = 33/489 (6%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAV-FIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
S+VW R DLR++DNPALA G + V +I E EG G +RWWL HSL+ L
Sbjct: 7 TSLVWLRDDLRLDDNPALAEAAGLGLPMTVLYILDEESEGIRPLGGAARWWLHHSLAALA 66
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ L S G+ LV +R S + + ++ T A +F+N Y D K+ GI
Sbjct: 67 ADLESKGSRLVLRRGK-SDAIVRKLAGQTKAGHIFWNRRYSQPERTIDAGLKDWAGENGI 125
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSM-----PFDPDAPLLPPKRINSGD 179
SF A+LL+EPW + G P+ ++ FW C++ P D A L P G
Sbjct: 126 HASSFQANLLFEPWTIRTGAGGPYKVYSPFWRACMASADIRDPLDAPAALPEPAASGPGV 185
Query: 180 MSRCPSDTLV---FEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
+ SDTL S S L A W PG A L F++GP+ +Y R
Sbjct: 186 PT---SDTLASWKLLPTSPDWSTGL-AETWEPGEKGAADRLADFLDGPVEDYGTGRNIPG 241
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
+ TS LSPHL FGEVS +V+ +R + + G D V +F +G RE++ ++
Sbjct: 242 TEGTSRLSPHLRFGEVSPFRVWREIRRR-----HPGKIPAD--VGIFRSELGWREFNWHL 294
Query: 297 SFNHPYSHERPLLGHLKFFSW-VVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+++P R F W V AW+QG+TGYPLVDAGMR+LW TGW+H+R+R
Sbjct: 295 LYHNPDLATRNFRPAFDNFQWGRVSRSELAAWQQGKTGYPLVDAGMRQLWQTGWMHNRVR 354
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
+ +SF VK L WR G ++FWDTL+DAD ++ WQ+++G+ D + RI NP +
Sbjct: 355 MAAASFLVKNLLTDWRIGEEWFWDTLVDADAANNPANWQWVAGSGADASPYYRIFNPVTQ 414
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
KFD +G Y+R ++PEL L + IH PW A YP P+V + ++
Sbjct: 415 SKKFDADGSYLRAFIPELQGLEGKQIHEPWTAG-----------ADGYPAPLVDLAESRE 463
Query: 476 RLDEALSEM 484
R +A ++
Sbjct: 464 RALDAYQKL 472
>gi|387887266|ref|YP_006317565.1| deoxyribodipyrimidine photo-lyase [Francisella noatunensis subsp.
orientalis str. Toba 04]
gi|386872082|gb|AFJ44089.1| deoxyribodipyrimidine photo-lyase [Francisella noatunensis subsp.
orientalis str. Toba 04]
Length = 464
Score = 269 bits (688), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 159/479 (33%), Positives = 249/479 (51%), Gaps = 23/479 (4%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
+ +I WFR+DLR+ DNPAL + I +FI +E G S+ WL HSL+
Sbjct: 2 SKKIAIHWFRQDLRLADNPALHQASQTDETITIFILDENQE----IGGASKLWLSHSLNS 57
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L+ SL + + S + + + +++K T ++N YD S+ RD + K+ L Q
Sbjct: 58 LNKSL----DNKLNFFSGNPLEIIKKLIKENNITDFYWNRCYDKYSINRDTQIKQFLQEQ 113
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
I SFN LL EP G + + F+++ + + + P NS
Sbjct: 114 NINASSFNGSLLIEPSQCKKDDGTHYKVYTPFYKELIKIRKYRSNIVKPS--FNSLKKLE 171
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+D + K S + W G + + L F++ + EY R + +TS
Sbjct: 172 AAADLDSLKLLEPKLSWQNIIDQWQIGEDASHQILEEFLDNKVKEYKTARDFMSTDSTSK 231
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSP+LHFGE+S ++F+ V+ NE + F+K + R++S Y + +P
Sbjct: 232 LSPYLHFGEISPNQIFNAVQNLDYIGNNEKH---------FIKELVWRDFSYYQIYYYPE 282
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
H + + F W + K W+ G+TG P+VDAGMRELW TG++H+R+R++V+SF
Sbjct: 283 LHNKNINQKFDNFEWDNNPTLLKKWQTGQTGIPIVDAGMRELWQTGYMHNRVRMIVASFL 342
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
+K + W++G ++F+DTL DAD+ S+ WQ+++G D + RI NP + KF+
Sbjct: 343 IKNCLIHWKYGERWFFDTLFDADIASNNTNWQWVAGCGLDAAPYFRIFNPVLQSEKFEA- 401
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
EY+R+++PEL LP + I PW E +LQ AG+ LG NYP P+ ID K R DEAL
Sbjct: 402 YEYIRKYVPELKFLPNKLIAKPWETSELILQEAGVMLGDNYPKPV--IDLKKSR-DEAL 457
>gi|340777154|ref|ZP_08697097.1| Deoxyribodipyrimidine photo-lyase [Acetobacter aceti NBRC 14818]
Length = 477
Score = 269 bits (687), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 173/478 (36%), Positives = 239/478 (50%), Gaps = 25/478 (5%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+I+WFR D R+ DN AL+A R GA V+ + I PE + G WW ++ LD+
Sbjct: 6 AILWFREDFRLADNAALSAAARDGAPVLCITILEPEPQQ----GAAHDWWRDGAIRALDA 61
Query: 66 SLRSLGTSL--VTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
+L+ L + ++ D V +L KA A+ + +N YDP D K L + G
Sbjct: 62 ALQEKDGRLHVLRGKAEDLVPAL---AKACNASAVHWNRRYDPTGRAIDTAIKTQLKSTG 118
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
SF LL+EPW + +PF F FW + DP PL P + +
Sbjct: 119 TEAYSFPGALLHEPWTIRTQADKPFQVFTPFWRTARKLG-DPRPPLSAPDTLKFASFPKT 177
Query: 184 PSDTLVFEDE-----SEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
+ +E + A W PG A + L F+ L YS+ R +
Sbjct: 178 DQFHSLTPEEFNLLPTSPDWAAGFRETWEPGEKAAHEHLALFVEDTLRGYSEERDYPAAE 237
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
S LSP+L FG V+ +++H V S N+ + FL +G RE++ + F
Sbjct: 238 ACSRLSPYLRFGHVTPAQLWHAVMQADASAQNK---------DKFLAELGWREFAWSILF 288
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
R L W D KAW+ GRTGYPLVDAGMRELW TGW+H+RIR+VV
Sbjct: 289 EQANVATRSLRPEFDALPWRTDPKGLKAWQSGRTGYPLVDAGMRELWHTGWMHNRIRMVV 348
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L + WR G ++F DTL+D D S+ + WQ+ +GT D F RI NP + K
Sbjct: 349 ASFLVKHLLIDWREGERWFADTLVDHDPASNPMNWQWNAGTGVDAAPFFRIMNPILQSEK 408
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
FD GEY+RRW+PEL R+P IH PW A + L+A G+ LG YP PI+ A+ R
Sbjct: 409 FDAEGEYIRRWVPELQRVPASMIHAPWAADQEALKACGVVLGRTYPHPIIEHKLARER 466
>gi|421869192|ref|ZP_16300831.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia H111]
gi|358070832|emb|CCE51709.1| Deoxyribodipyrimidine photolyase [Burkholderia cenocepacia H111]
Length = 492
Score = 269 bits (687), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 177/469 (37%), Positives = 245/469 (52%), Gaps = 13/469 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFR DLRV D PAL V +G ++ VF+ G +RWWL SL+ LD+
Sbjct: 10 AIVWFRDDLRVTDQPALTRAVESGRPLVCVFVDDTGAGAGPALGGAARWWLHGSLAGLDA 69
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L G L+ R D+ + +V+ TGA +++N Y D K +L A+G+
Sbjct: 70 ALARHGGRLLLLRG-DAQREIERLVRDTGAAAVYWNRRYAQPQRDADAALKTSLKARGVT 128
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
V S N LL EPW+V P+ F A+ + APL P +I +
Sbjct: 129 VESSNGSLLNEPWEVLTGSDGPYQVFTAY-WRAARRDRAVAAPLPAPGQIVFHSWPKAVR 187
Query: 186 DTLVFEDESEKGSNAL-----LARAW-SPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
D + D +A L AW +P + A L F+ L Y+ R + D
Sbjct: 188 DRALALDALALRPHAPDWAGGLRDAWPAPDEAGAHAQLDAFLTTSLAGYADARDRPDRPA 247
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP L FG VS R+V+H V+ + D+ FL +G RE+S + ++
Sbjct: 248 TSRLSPFLRFGNVSPRQVWHAVQGAASAGGAAYAADADK----FLSELGWREFSYTLLYH 303
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P W D +AW++GRTGYPLVDAG+RELW TGW+H+R+R+VV+
Sbjct: 304 FPTLATDNFRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTTGWMHNRVRMVVA 363
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF +K L + WR G +F DTL+DAD ++A WQ+++G D + RI NP +G KF
Sbjct: 364 SFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYFRIFNPVAQGQKF 423
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
DP+G YVRRW+PELA L IH PW A L+AAGI LG +YP P+V
Sbjct: 424 DPDGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGIRLGVDYPAPLV 472
>gi|144897443|emb|CAM74307.1| Deoxyribodipyrimidine photo-lyase [Magnetospirillum gryphiswaldense
MSR-1]
Length = 457
Score = 269 bits (687), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 161/440 (36%), Positives = 234/440 (53%), Gaps = 28/440 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
+VW RRDLR+ D+PAL + G V+ F +++ G SRWWL HSL+ L ++
Sbjct: 7 LVWLRRDLRLTDHPALTHAAQQGPVVLAF--CHDDQDGRALGGASRWWLHHSLAALGDTV 64
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+L R + L E A GA +++N DP + R ++AL I
Sbjct: 65 -----TLARGRCEAEIPRLAE---ACGARAVYWNASADPALSATEARVRQALK---IPTE 113
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
+F D L+ V G PF F FW L++P P P + ++ CP
Sbjct: 114 TFAGDELFSIGAVRTNAGTPFQVFTPFWRTALALPPPPQPLPRPAPLV----LAPCPGLP 169
Query: 188 LV-FEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPH 246
L E + +A W PG + A L F++GP+ Y ++R TS LSPH
Sbjct: 170 LAALELMPKLDWWRGMAELWQPGEAGAAARLADFLDGPVETYQRDRDLPAKPGTSLLSPH 229
Query: 247 LHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHER 306
L FGE+S R+++H R GD ++ FLK +G RE+SR++ P
Sbjct: 230 LAFGEISPRQIWHAAR---------ALPPGD-GIHTFLKELGWREFSRHLLARQPDLATI 279
Query: 307 PLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVL 366
PL + F W D + W+ GRTGYP++DAG+R+LW TGW+H+R+R++V+SF +K L
Sbjct: 280 PLRPEFRAFPWRDDPEALRKWQMGRTGYPIIDAGLRQLWQTGWMHNRVRMIVASFLIKDL 339
Query: 367 QLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYV 426
+PW+ G +FWDTL+DAD ++A WQ+++G+ D F RI NP +G KFDP+G YV
Sbjct: 340 LIPWQAGEAWFWDTLVDADSANNAASWQWVAGSGADAAPFFRIFNPVTQGEKFDPDGTYV 399
Query: 427 RRWLPELARLPTEWIHHPWN 446
R W+PELA LP ++H PW
Sbjct: 400 RTWVPELAHLPKAFVHQPWK 419
>gi|381399807|ref|ZP_09924825.1| DNA photolyase FAD-binding protein [Microbacterium laevaniformans
OR221]
gi|380772870|gb|EIC06556.1| DNA photolyase FAD-binding protein [Microbacterium laevaniformans
OR221]
Length = 448
Score = 269 bits (687), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 164/433 (37%), Positives = 231/433 (53%), Gaps = 21/433 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGV-RAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S+VWFR DLR+ DNPAL A V R +IAV + + G G +RWWL HSL+ L
Sbjct: 6 SLVWFRDDLRLADNPALRAAVDRGEPIIAVSVLDEQSAGVRPLGGAARWWLHHSLAELGE 65
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
LR G+ LV +R S + + + GA +F+N Y D K +L A G+
Sbjct: 66 RLREKGSGLVLRRGAAS-EVIPSLAREVGAGAVFWNRRYSASEREVDAGLKTSLRAGGLE 124
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
V SF A LL+EPW V G P+ F FW+ C +P P PL P+ ++ G S S
Sbjct: 125 VSSFAASLLFEPWTVRTGAGTPYGVFTPFWKACQQLP-APREPLPEPRELH-GVSSYPAS 182
Query: 186 DTL---VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
D L + LL R W+PG A + L F+ + +Y R + TS
Sbjct: 183 DDLDDWGLLPTRPDWAGGLLER-WTPGELAARRRLHAFLAEDVADYDHARDEPAGGATSM 241
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSP L +GE+S +V+H A + V FL +G RE++ + F+ P
Sbjct: 242 LSPRLRWGELSPFQVWH------------AAMASEARVGGFLSEVGWREFAWHTLFHAPD 289
Query: 303 SHERPLLGHLKFFSWV-VDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ L F W ++ +AW++G TG PLVDAGMRELWA+G++H+R+R+V +SF
Sbjct: 290 LATKNLKPAYDAFPWPRLNPSMLRAWQRGETGVPLVDAGMRELWASGFMHNRVRMVTASF 349
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L + WR G ++FWDTL+DAD S+ WQ+++G+ D + RI NP+ + KFDP
Sbjct: 350 LVKNLLIDWRRGEEWFWDTLVDADAASNPFNWQWVAGSGADAAPYFRIFNPELQAKKFDP 409
Query: 422 NGEYVRRWLPELA 434
+G YVR W P+ A
Sbjct: 410 DGRYVREWAPDAA 422
>gi|209543430|ref|YP_002275659.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus
PAl 5]
gi|209531107|gb|ACI51044.1| Deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus
PAl 5]
Length = 463
Score = 268 bits (685), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 170/473 (35%), Positives = 237/473 (50%), Gaps = 41/473 (8%)
Query: 7 SIVWFRRDLRVEDNPALA-AGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFR D R+ DN AL A R + + I + + PG +RWWL ++ LD
Sbjct: 9 TIVWFREDFRIADNMALLEAEKRGQPTLCIVI----LDDAHLPGAAARWWLHGAIRSLDE 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LR +G +L R + + L E+V+ TGA +F+N YDP D K L A+G+
Sbjct: 65 TLRGMGGALHVFRGA-ARAVLAEIVRKTGAGAVFWNRRYDPAGREADTAIKADLRARGLT 123
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAP-------LLPPKRINSG 178
VRSF LL+EPW V G P+ F AFW ++P PP +
Sbjct: 124 VRSFPGALLHEPWSVCTRSGAPYKIFTAFWRAACALPAPFPPHPAPERLVFAPPPPMPDS 183
Query: 179 DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
++R D L+ G L WSPG A L+ F+ Y+ R
Sbjct: 184 LITRHEQDGLLPRHPDWAGG---LRDMWSPGEEEAGDQLSDFLRHDGAGYATARDFPGDE 240
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LSP L FG VS +V+H K + FL +G R+++ + F
Sbjct: 241 ATSRLSPFLRFGHVSPAQVWHAATRKACP-------------DKFLMELGWRDFAWSLLF 287
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
+P R L W D G AW++G+TGYPLVDAGMRELW TGW+H+R+R+V
Sbjct: 288 FNPDLATRNLRPEFDAMPWRHDPGGLAAWQRGQTGYPLVDAGMRELWHTGWMHNRVRMVA 347
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L + WR G ++F DTL+D D S+ + WQ+ +GT D + R+ NP + K
Sbjct: 348 ASFLVKHLLIDWREGERWFADTLVDHDPASNPMNWQWNAGTGVDAAPYFRVMNPILQSRK 407
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRID 471
FDP+G Y+RRW+PELA L + IH PW E G+ +P+P +D
Sbjct: 408 FDPHGVYIRRWVPELAHLSDDAIHAPW------------ESGATHPYPAPIVD 448
>gi|268317159|ref|YP_003290878.1| deoxyribodipyrimidine photo-lyase [Rhodothermus marinus DSM 4252]
gi|262334693|gb|ACY48490.1| Deoxyribodipyrimidine photo-lyase [Rhodothermus marinus DSM 4252]
Length = 486
Score = 268 bits (684), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 169/491 (34%), Positives = 250/491 (50%), Gaps = 24/491 (4%)
Query: 14 DLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGT 72
DLR+ +NPAL A +R G ++ +FIW E PG RWWL HSL+ LD+ L+ G+
Sbjct: 12 DLRLAENPALDAALRTGHPIVPLFIWPRRAERFERPGAARRWWLHHSLAALDAELQRRGS 71
Query: 73 SLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNAD 132
L+ + + D L+++++ L +N P L + I +
Sbjct: 72 RLILRVAEDPAEVLIQLLETLPVAALCWNLPLLPHERRLASSIAPVLRRRSIRLIETVGR 131
Query: 133 LLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTL--VF 190
L + + G + F FW K L + P AP LPP RI + S SDTL +
Sbjct: 132 TLLDLEQLRTKSGDVYRVFTPFW-KALRQQYIPPAPFLPPARIPAPS-SWPDSDTLESLA 189
Query: 191 EDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFG 250
++ +A W PG + A L TF+ L Y + R + D TS LSP+L G
Sbjct: 190 LLPRPDWASETIASHWLPGEAAAWSTLRTFLAYGLPHYDRARDRLDQEATSKLSPYLANG 249
Query: 251 EVSVRKVFHLVRIKQVSWANEGNKAG--DESVNLFLKSIGLREYSRYMSFNHPYSHERPL 308
E+S ++ +V E +AG ++V F + + RE+ Y+ ++ P + RPL
Sbjct: 250 EISPHLLWRVV--------GEAQRAGVSSKAVEAFRRQLAWREFGYYLLYHFPETTHRPL 301
Query: 309 LGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQL 368
F W + +AW+ GRTG P++DA MR+LW +GW+H+R R++V+S K L++
Sbjct: 302 RPEWSDFPWRTEAPELEAWQHGRTGIPVIDAAMRQLWQSGWMHNRTRLLVASLLTKNLRI 361
Query: 369 PWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRR 428
W G ++FWDTL+DADL ++ LGWQ+ +G D + RI NP + KFDP G Y+RR
Sbjct: 362 HWLRGAEWFWDTLVDADLANNTLGWQWTAGCGADAAPYFRIFNPVLQSKKFDPEGRYIRR 421
Query: 429 WLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS--EMWQ 486
WLPEL RLP IH PW AP I YP PIV + ++ +EAL+ E W+
Sbjct: 422 WLPELGRLPAPCIHAPWEAPSCAEMLREI----GYPSPIVSLMDSR---EEALALYENWK 474
Query: 487 QEAASRAAIEN 497
+R I +
Sbjct: 475 ASIKNRYDIHS 485
>gi|365880713|ref|ZP_09420069.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 375]
gi|365291224|emb|CCD92600.1| Deoxyribodipyrimidine photo-lyase (DNA photolyase)
(Photoreactivating enzyme) [Bradyrhizobium sp. ORS 375]
Length = 422
Score = 268 bits (684), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 152/410 (37%), Positives = 224/410 (54%), Gaps = 9/410 (2%)
Query: 60 LSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
+ L + L++LGT LV +R + L ++ + T A +++N + + L
Sbjct: 1 MRALRAELQALGTDLVIRRGP-AAKVLGQLARETEAGAVYWNDVAQAGPRGVAASVEAGL 59
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS-G 178
G+A R F DLL +P ++ G+ F FW++ L++ DP PL P R+
Sbjct: 60 GDIGVASRVFPDDLLVDPATMSGKDGRGPRVFTPFWKRVLAL-GDPAKPLPTPVRLPPVA 118
Query: 179 DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
++ L E + L W PG A + L F+ + Y+ +R + D
Sbjct: 119 GIASLGIHELALEPTRPDWAGGLRT-TWQPGERTAQQRLRGFLESAVSSYAADRDRPDID 177
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LSPHL FGE+S R+++H R A E A + ++ FL +G RE+SR++ +
Sbjct: 178 ATSRLSPHLRFGEISPRQIWHAARF-----AAEERPALAKGIDKFLSEVGWREFSRHLLY 232
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
N+P R L F W D+ AW++G+TGYP+VDAGMRELW TG +H+R+R+V
Sbjct: 233 NNPDLATRNLQPSFDPFPWTQDDAALAAWQRGQTGYPIVDAGMRELWHTGSMHNRVRMVA 292
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+S VK L + WR G ++FWDTL+DAD S+ WQ+++G+ D + R+ NP +G K
Sbjct: 293 ASLLVKHLLIDWRQGEQWFWDTLVDADAGSNPASWQWVAGSGADAAPYFRVFNPVLQGEK 352
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
FD NG YVRRW+PEL+RLP IH PW A L AG+ LG +YP PIV
Sbjct: 353 FDANGSYVRRWVPELSRLPAGLIHQPWAAKPLELAEAGVTLGRSYPAPIV 402
>gi|172061140|ref|YP_001808792.1| deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MC40-6]
gi|171993657|gb|ACB64576.1| Deoxyribodipyrimidine photo-lyase [Burkholderia ambifaria MC40-6]
Length = 500
Score = 266 bits (679), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 183/493 (37%), Positives = 261/493 (52%), Gaps = 13/493 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFR DLRV D PAL V +G ++ V++ + G +RWWL +L+ LD+
Sbjct: 10 AIVWFRDDLRVTDQPALTRAVASGRPLVCVYVDDTGDGAGRALGGAARWWLHGALAALDA 69
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L G L+ R D+ + VV TGA +++N Y D K +L A+G+
Sbjct: 70 ALARHGGRLLLLRG-DAQREIERVVHDTGAAAVYWNRRYAQPQRDADAALKASLKARGLE 128
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRIN-----SGDM 180
V S N LL EPW+V G PF F A+W + + APL P+RI +
Sbjct: 129 VESSNGSLLNEPWEVMTGAGTPFQVFTAYW-RAVRRDRLVAAPLPEPERIAFHPWPAAVR 187
Query: 181 SRCPS-DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
R + +TL + + L +P + A L F++ L Y+ R + +
Sbjct: 188 ERALALNTLALRPHAPDWAGGLRDAWPAPDEAGAHARLDAFVHESLAGYADTRDRPGESA 247
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP L FG VS R+V+H V+ + ++ FL +G RE+S + ++
Sbjct: 248 TSRLSPFLRFGNVSPRQVWHAVQGAAQAGGAACAAGAEK----FLSELGWREFSHVLLYH 303
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P W D +AW++G TGYPLVDAGMRELW TGW+H+R R+VV+
Sbjct: 304 FPALATDNFRAQFDAMPWRDDPAALRAWQRGLTGYPLVDAGMRELWTTGWMHNRARMVVA 363
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L + WR G ++F DTL+DAD ++ WQ+++G D + RI NP +G KF
Sbjct: 364 SFLVKHLLIDWRAGERWFHDTLVDADAANNPANWQWVAGCGADAAPYFRIFNPVTQGRKF 423
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP G YVRRW+PELA L IH PW+A + L AAG+ LG +YP PIV D A+ R +
Sbjct: 424 DPQGAYVRRWVPELAGLDAAAIHAPWDASAAQLAAAGVRLGLDYPAPIVDHDGARRRALD 483
Query: 480 ALSEMWQQEAASR 492
AL+ + + AA +
Sbjct: 484 ALATLPKPGAAGQ 496
>gi|339021825|ref|ZP_08645812.1| deoxyribodipyrimidine photolyase [Acetobacter tropicalis NBRC
101654]
gi|338751178|dbj|GAA09116.1| deoxyribodipyrimidine photolyase [Acetobacter tropicalis NBRC
101654]
Length = 490
Score = 265 bits (678), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 167/476 (35%), Positives = 243/476 (51%), Gaps = 26/476 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+V FR D R+ D+PAL+ G V+ V++ PE G WWL + + L +
Sbjct: 14 LVLFRDDFRLTDHPALSGACTTGQPVLCVYVHDPETTR----GGAIGWWLAQACTALADA 69
Query: 67 LRSLGTSL--VTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
L G +L ++ + D V+ E +A G +F+N YDP +D K L QGI
Sbjct: 70 LSEKGGTLHHLSGHTPDVVA---EFAQAAGVDTVFWNRRYDPTGKAQDTALKARLEQQGI 126
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
+V+S A LL+EPW + G P+ F A+W+ +M P L P++I + P
Sbjct: 127 SVQSCAARLLHEPWTIRTGAGTPYRVFTAWWKAARAM-GKPGRCLPAPRQITFAPL---P 182
Query: 185 SDTLVFEDESEKGSNALLARA------WSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
+D + + L A A W ++A LTTF+ L Y + + D
Sbjct: 183 ADAQALTLRTLPPAPPLPAGANAAEADWPCTEADAQDTLTTFVEDNLAHYIQEHDRPDKD 242
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TTS LSP+L G +S R+V+H V + A E+ FL +G R+++ F
Sbjct: 243 TTSRLSPYLRAGLLSARQVWHAVSTAATT------PALAENAEKFLSELGWRDFAWMQLF 296
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
P R L W AW+QG+TGYPLVDAGMR+L+ATGW+H+R+R+VV
Sbjct: 297 YEPDLAWRNLRPEFDHMPWQKSPALLAAWQQGQTGYPLVDAGMRQLYATGWMHNRVRMVV 356
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF K L WR G ++F L+DAD +A+ WQ+ +GT D + RI NP + K
Sbjct: 357 ASFLTKHLLTDWREGEQWFQARLVDADPAQNAMNWQWCAGTGIDASPWFRIFNPVGQSEK 416
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
FDP G Y+R W+PEL ++P + IH PW A S+ + G G +YP PIV + A+
Sbjct: 417 FDPTGAYIRTWVPELRQMPDKLIHTPWKADASLCRQIGFTPGRSYPNPIVDLKLAR 472
>gi|154248595|ref|YP_001419553.1| deoxyribodipyrimidine photo-lyase [Xanthobacter autotrophicus Py2]
gi|154162680|gb|ABS69896.1| Deoxyribodipyrimidine photo-lyase [Xanthobacter autotrophicus Py2]
Length = 500
Score = 265 bits (678), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 176/473 (37%), Positives = 239/473 (50%), Gaps = 11/473 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYP-GRVSRWWLKHSLSHLDS 65
S++WFR DLR+ DNPALAA A +A E+ P G +RWWL SL L +
Sbjct: 26 SLLWFRDDLRLSDNPALAALAEARTPLAALYVLDEDSPGVRPLGGAARWWLAQSLRALAA 85
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L+ G L+ +R + + EV GA + FN DH L ++
Sbjct: 86 DLKDRGVPLILRRGPAN-RVVPEVAALLGAATVAFNDRAGAAETRVDHAVAARLLSEDRR 144
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
V SF A LL+ P V A G TF++F L D PL PK ++ G
Sbjct: 145 VLSFCAHLLHPPGSVEGASGGMPRTFSSFHRAALKA-RRLDTPLPAPKHLD-GVAHPPEG 202
Query: 186 DTLVFEDESEKGSN--ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
+TL D + L AW+ G + A L F++ L Y++ R + D S L
Sbjct: 203 ETLESFDLEPTHPDWAGGLRSAWTAGEAAAQARLAAFMDAGLAGYAEGRDRPDLNHVSRL 262
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SPHL FGE+S R++ VR A E + F + RE+S ++ P
Sbjct: 263 SPHLRFGEISPRQILSAVRH-----AAEAGAVPLVDADKFEAELYWREFSYHLLAEMPDL 317
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
+ F W G KAW +G TGYPLVDAG+R+LW TGW+H+R+R+VV+SF
Sbjct: 318 ARSNIQHGFDAFPWRECPGELKAWHKGLTGYPLVDAGLRQLWQTGWMHNRVRMVVASFLT 377
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WR G +FWDTL+DAD ++A WQ+++G+ D + RI NP +G KFDP+G
Sbjct: 378 KHLLIDWRSGEDWFWDTLVDADGANNAASWQWVAGSGLDAAPYFRIFNPVTQGEKFDPDG 437
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
YVR ++PEL +LP IH PW A L AGI LG YP P+V AA+ R
Sbjct: 438 TYVRTFVPELGKLPAPLIHKPWTADAHTLAHAGIRLGHTYPRPLVDHGAARER 490
>gi|309811658|ref|ZP_07705437.1| putative deoxyribodipyrimidine photo-lyase [Dermacoccus sp.
Ellin185]
gi|308434459|gb|EFP58312.1| putative deoxyribodipyrimidine photo-lyase [Dermacoccus sp.
Ellin185]
Length = 463
Score = 265 bits (676), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 161/457 (35%), Positives = 233/457 (50%), Gaps = 39/457 (8%)
Query: 6 CSIVWFRRDLRVEDNPALAAGV------------------RAGAVIAVFIWAPEEEGPYY 47
S+VWFR DLR D+PAL A V V+A+F+ E +G
Sbjct: 2 TSLVWFRDDLRTFDHPALRAAVDHAVTSQGSQESDDGASSEPAGVVALFVLDEESDGLRP 61
Query: 48 PGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPL 107
G +WWL HSL L + L +LG LV +R + +L+VV+ + +N Y
Sbjct: 62 LGGAVKWWLHHSLVALRAKLEALGIPLVLRRGA-AHDVVLDVVETFDVDFVGWNRRYGGP 120
Query: 108 SLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMP----- 162
V D K A + + V S+ A+LL+EPW + G P+ F FW+ CLS P
Sbjct: 121 ERVVDAGIKAAFAERDVEVHSYAANLLFEPWTITTGGGTPYRVFTPFWKACLSEPQPREP 180
Query: 163 FDPDAPLLPPKR-INSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFI 221
D + L PP + + DT S + A+AW+PG A + L F+
Sbjct: 181 LDAPSALTPPSALVEQAGQASDDLDTWALLPTKPDWSTGI-AKAWTPGEDAAHELLADFL 239
Query: 222 NGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVN 281
+ ++ Y+ R + TS LSPHL FGE+S + ++H R ++G + V
Sbjct: 240 DDAVVHYATQRDEPSKPATSRLSPHLRFGEISPQTIWHAAR-----------RSG-KDVE 287
Query: 282 LFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWV-VDEGYFKAWRQGRTGYPLVDAG 340
FL +G RE++ + +++P HE L F W +DE AW +G TG PLVDAG
Sbjct: 288 TFLSEVGWREFAWHTLYDNPDLHEVNLNRKFDAFPWPPLDEDALLAWEKGETGVPLVDAG 347
Query: 341 MRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTI 400
MRELW TG +H+R+R+VV+SF K L + WR G ++FWDTL+DAD S+ WQ+++G
Sbjct: 348 MRELWETGTMHNRVRMVVASFLTKNLLIDWRIGEEWFWDTLVDADAASNPFNWQWVAGCG 407
Query: 401 PDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLP 437
D + R+ NP+ + KFDP+ YVRRW + R P
Sbjct: 408 ADAAPYFRVFNPETQRKKFDPDERYVRRWGADDGREP 444
>gi|162146574|ref|YP_001601033.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter diazotrophicus
PAl 5]
gi|161785149|emb|CAP54694.1| putative deoxyribodipyrimidine photo-lyase [Gluconacetobacter
diazotrophicus PAl 5]
Length = 463
Score = 265 bits (676), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 169/473 (35%), Positives = 236/473 (49%), Gaps = 41/473 (8%)
Query: 7 SIVWFRRDLRVEDNPALA-AGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFR D R+ DN AL A R + + I + + PG +RWWL ++ LD
Sbjct: 9 TIVWFREDFRIADNMALLEAEKRGQPTLCIVI----LDDAHLPGAAARWWLHGAIRSLDE 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LR +G +L R + + L E+V+ TGA +F+N YDP D K L A+G+
Sbjct: 65 TLRGMGGALHVFRGA-ARAVLAEIVRKTGAGAVFWNRRYDPAGREADTAIKADLRARGLT 123
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAP-------LLPPKRINSG 178
VRSF LL+EPW V P+ F AFW ++P PP +
Sbjct: 124 VRSFPGALLHEPWSVCTRSVAPYKIFTAFWRAACALPAPFPPHPAPERLVFAPPPPMPDS 183
Query: 179 DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
++R D L+ G L WSPG A L+ F+ Y+ R
Sbjct: 184 LITRHEQDGLLPRHPDWAGG---LRDMWSPGEEEAGDQLSDFLRHDGAGYATARDFPGDE 240
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LSP L FG VS +V+H K + FL +G R+++ + F
Sbjct: 241 ATSRLSPFLRFGHVSPAQVWHAATRKACP-------------DKFLMELGWRDFAWSLLF 287
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
+P R L W D G AW++G+TGYPLVDAGMRELW TGW+H+R+R+V
Sbjct: 288 FNPDLATRNLRPEFDAMPWRHDPGGLAAWQRGQTGYPLVDAGMRELWHTGWMHNRVRMVA 347
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L + WR G ++F DTL+D D S+ + WQ+ +GT D + R+ NP + K
Sbjct: 348 ASFLVKHLLIDWREGERWFADTLVDHDPASNPMNWQWNAGTGVDAAPYFRVMNPILQSRK 407
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRID 471
FDP+G Y+RRW+PELA L + IH PW E G+ +P+P +D
Sbjct: 408 FDPHGVYIRRWVPELAHLSDDAIHAPW------------ESGATHPYPAPIVD 448
>gi|319785752|ref|YP_004145227.1| DNA photolyase FAD-binding protein [Pseudoxanthomonas suwonensis
11-1]
gi|317464264|gb|ADV25996.1| DNA photolyase FAD-binding protein [Pseudoxanthomonas suwonensis
11-1]
Length = 476
Score = 265 bits (676), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 168/458 (36%), Positives = 250/458 (54%), Gaps = 21/458 (4%)
Query: 5 GCSIVWFRRDLRVEDNPALAAGVRAGAV-IAVFIWAPEEEGPYYPGRVSRWWLKHSLSHL 63
G ++VWFR DLR++D+PAL A + G V + V+I AP+EEG + PG S W + SL+ L
Sbjct: 2 GVALVWFRDDLRLDDHPALRAALDRGLVPVPVYIHAPDEEGAWAPGAASDAWRRRSLAAL 61
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
+L G+ L+ S+ +L + TGA + +N Y+P RD R K L G
Sbjct: 62 AEALAQRGSRLLMLHGP-SLGTLQALAALTGAEAVLWNRRYEPHIEARDTRIKRQLRQAG 120
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSM-----PFDPDAPLLPPKRINSG 178
+ SFN LL+EPW++ QG P+ F FW+ L+ ++ A L P + +
Sbjct: 121 LHAESFNGSLLFEPWEIETKQGDPYRVFTPFWKNALAQWRLRPLWEASARLPSPDQAGAP 180
Query: 179 DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
D D +V E+ +A +PG + A L F+ L Y++ R +
Sbjct: 181 DGRHL--DAIV--PETRPDWDAGFWDEATPGEAGARARLQAFLAHGLEGYAQARDRMAVD 236
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LS HLHFGEVSV++V V +V + FL +G RE++ ++
Sbjct: 237 GTSRLSAHLHFGEVSVQRVAAAVLAAEVPAPDR---------ERFLAELGWREFAHHVMH 287
Query: 299 NHPYSHERPLLGHLKFFSWVVD-EGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
++P+ ++ L + F W AW +GRTG P++DAGMR+LW TGW+H+R+R++
Sbjct: 288 HYPHVVDQDLDPRMADFRWARPLRTTLDAWERGRTGVPIIDAGMRQLWQTGWMHNRVRMI 347
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V+S+ K L+L WR G ++FWDTL+DADL ++ GWQ+ +GT D + R+ NP +
Sbjct: 348 VASWVTKHLRLHWRHGARWFWDTLVDADLANNTQGWQWAAGTGADAAPYFRVFNPVSQAM 407
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAA 455
KFDP GEY+ RWLPELA LP PW P+ + + A
Sbjct: 408 KFDPQGEYIARWLPELAALPLPARFAPWEHPDLLRRLA 445
>gi|421599238|ref|ZP_16042485.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. CCGE-LA001]
gi|404268645|gb|EJZ33078.1| deoxyribodipyrimidine photolyase [Bradyrhizobium sp. CCGE-LA001]
Length = 397
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 150/390 (38%), Positives = 216/390 (55%), Gaps = 10/390 (2%)
Query: 88 EVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQP 147
EVV+ GA+ +++N + + + + AL G +SF DLL P + + +G+
Sbjct: 4 EVVRECGASAVYWNAIAQAPHQAVERQLEAALAKLGTDSQSFPGDLLVPPAAIRNKEGRG 63
Query: 148 FATFAAFWEKCLSMPFDPDAPLLPPKRIN-SGDMSRCPSDTLVFEDESEKGSNALLARAW 206
F FW + L++ DP PL PK + +G ++ ++ E + L W
Sbjct: 64 LRVFTPFWRRVLAL-GDPPKPLPAPKELRPAGKIAGDRLESWKLEPLKPDWAGGL-RETW 121
Query: 207 SPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQV 266
+PG A L F++ Y +R + D S LSPHL FGE+S R+V+H R
Sbjct: 122 TPGEIAARARLGAFLDHTARLYVGDRDRPDRDGNSRLSPHLRFGELSPRQVWHAARF--- 178
Query: 267 SWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKA 326
A + A + V FL +G RE+ R++ ++HP L + F W D+ A
Sbjct: 179 --AAAEDPALGQGVEKFLTELGWREFCRHLLYDHPDLATANLQANFDRFPWQPDKKALAA 236
Query: 327 WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADL 386
WR+GRTGYP+VDAG+RELW TG +H+R+R+VV+SF VK L + WR G +FWDTL+DAD
Sbjct: 237 WRRGRTGYPIVDAGLRELWHTGVMHNRVRMVVASFLVKHLLIDWREGEAWFWDTLVDADA 296
Query: 387 ESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWN 446
S+ WQ+++G D + R+ NPQ +G KFDP+G YVRRW+PEL LP + IH PW
Sbjct: 297 GSNPANWQWVAGCGADAAPYFRVFNPQLQGEKFDPDGTYVRRWVPELKDLPAKLIHQPWQ 356
Query: 447 APESVLQAAGIELGSNYPFPIVRIDAAKCR 476
A L +AG+ LG YP PIV D A+ R
Sbjct: 357 ATPIELASAGLTLGKTYPQPIV--DHARGR 384
>gi|254877189|ref|ZP_05249899.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254843210|gb|EET21624.1| deoxyribodipyrimidine photolyase [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 464
Score = 263 bits (673), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 168/482 (34%), Positives = 255/482 (52%), Gaps = 31/482 (6%)
Query: 4 RGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHL 63
+ +I WFR+DLR+ DNPAL +A I +FI +E G S+ WL HSLS L
Sbjct: 3 KKIAIHWFRQDLRLADNPALHQASQADETITIFILDENQE----IGGASKLWLHHSLSSL 58
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
SL + S + + + ++VK T ++N YD S+ RD + K+ L Q
Sbjct: 59 SKSLNNKLNFF----SGNPLEIIKKLVKENNITDFYWNRCYDKYSIDRDTQIKQFLQEQD 114
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPP----KRINSGD 179
I V SFN LL EPW G + + F+++ + + + P K++ + D
Sbjct: 115 INVSSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIVKPSFNSLKKLETAD 174
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
D+L + N + W G + + L F++G + EY R + +
Sbjct: 175 ----ELDSLKLLEPKLSWQNII--DQWQIGEDASHQILEEFLDGKVKEYKIARDFMSTDS 228
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP+LHFGE+S ++F+ V+ NE + F+K + R++S Y +
Sbjct: 229 TSKLSPYLHFGEISPNQIFNAVQSLDYIGNNEEH---------FIKELVWRDFSYYQIYY 279
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
+P H + + F W D K W+ G+TG P+VDAGMRELW TG++H+R+R++V+
Sbjct: 280 YPELHNKNINQKFDSFEWDNDATLLKRWQTGQTGIPIVDAGMRELWQTGYMHNRVRMIVA 339
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF +K + W++G K+F+DTL DAD S+ WQ+++G D + RI NP + KF
Sbjct: 340 SFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKF 399
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
+ EY+R+++PEL LP + I PW A E VLQ AG++LG NYP P+ ID K R D+
Sbjct: 400 EA-YEYIRKYVPELKFLPNKLIAKPWEASELVLQEAGVKLGDNYPTPV--IDLKKSR-DK 455
Query: 480 AL 481
AL
Sbjct: 456 AL 457
>gi|405971549|gb|EKC36382.1| Cryptochrome-2 [Crassostrea gigas]
Length = 830
Score = 263 bits (673), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 161/481 (33%), Positives = 247/481 (51%), Gaps = 40/481 (8%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGP---YYPGRVSRWWLKHSLSHL 63
+ WFRRDLR+ DNPAL VI VF+W+ EE P G ++ WL H+L+HL
Sbjct: 154 VYWFRRDLRLYDNPALFEAASMNVPVILVFLWSESEEDPEGVVAAGGATKLWLHHALNHL 213
Query: 64 DSSLRSLGTSLVTKRSTDSVS-SLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
D S+ + + R T S +L +++ TGA L N +Y+P RD + L +
Sbjct: 214 DKSISDRYNNRIIYRKTQSCQREILSLIEETGAKALLINDVYEPFLKQRDDKICAELQRK 273
Query: 123 GIAVRSFNADLLYEPWDVN--DAQGQPFATFAAFWEKC-------LSMPFDPDAPLLPPK 173
GI + F++ LL+EP V+ + + F E C + P D L P
Sbjct: 274 GIECKKFHSYLLHEPGSVSAESVGMRGVGSVTHFMECCRQSDAQPIGHPLDYPPTLPKPD 333
Query: 174 RINSG------DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIE 227
+ S ++++ P +D S A + R W G A KAL F++ + +
Sbjct: 334 QFPSSSSLHDLELAKMPRR----KDGSIIDWAAPIVRQWDFGEEGAWKALELFLSEGVRK 389
Query: 228 YSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSI 287
Y K +AD T +SP+LHFG++S R V R + FL+ +
Sbjct: 390 YEKESCRADHLNTCRISPYLHFGQISPRAVLEEARHMKSP--------------KFLRKL 435
Query: 288 GLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWAT 347
R+ S ++ P +P H + +W D G+ KAW++GRTG+PLVDA MR+LW
Sbjct: 436 AWRDLSYWLLTLWPDLPSQPTRVHYRDQAWSRDPGHLKAWQRGRTGFPLVDAAMRQLWLE 495
Query: 348 GWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFD 407
GW+++ +R VV+SF + L+L W G ++F DTLLDAD+ +A+ WQ +G + ++
Sbjct: 496 GWINNYLRHVVASFLISYLRLHWVEGYRWFQDTLLDADVAINAMMWQ--NGGMSGLDQWN 553
Query: 408 RIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPI 467
+ +P DP+G YVR+W PE+A LP ++IH PW P S+L+ GI+LG YP+ +
Sbjct: 554 FVMHPVDAALTCDPDGAYVRKWCPEIAALPNDFIHQPWKCPPSILRRCGIKLGETYPYRV 613
Query: 468 V 468
+
Sbjct: 614 I 614
>gi|378550464|ref|ZP_09825680.1| hypothetical protein CCH26_10260 [Citricoccus sp. CH26A]
Length = 479
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 170/497 (34%), Positives = 243/497 (48%), Gaps = 44/497 (8%)
Query: 2 SGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAP---EEEGPYYPGRVSRWWLKH 58
S R +IVWFR DLRV D+PAL A AGAV+ ++I E GP G +RWW
Sbjct: 8 SARPLTIVWFRDDLRVADHPALTAAREAGAVVGLWIREARDAEGRGPRPLGGATRWWAHR 67
Query: 59 SLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEA 118
SL L L LG LV + + L V A+ + ++ Y P S D K+
Sbjct: 68 SLEVLAVELEELGIPLVFA-AGPAAEVLPAVASGLQASAVTWSRRYAPASRALDAHLKDG 126
Query: 119 LTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSG 178
L A G+ V S LL EPW+V+ G + F FW+ +P P P+ +G
Sbjct: 127 LRAAGLEVHSHPGSLLVEPWEVSTGSGGHYKVFTPFWKAAADLPVGAPLPAPEPQDPPAG 186
Query: 179 ----------DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEY 228
D + P L DE + +AR W PG A +AL + + Y
Sbjct: 187 LSGRLDRLHRDGTVVPLGQLDLLDEDPRWWEETVARYWEPGCVTAGEALAG-LEETVTGY 245
Query: 229 SKNRR-KADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSI 287
S R D TS LSP L FGE+S R++ H V E +E +++ +
Sbjct: 246 STTRDVPGDDHGTSRLSPRLRFGELSPRQLVHAVTAHP-----ELGVPENEDRRAWVRQL 300
Query: 288 GLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWAT 347
RE+S +++++ P PL + F W D+ +AW++GRTG PLVDAGMR+LW +
Sbjct: 301 YWREFSWHLTYHCPPLESGPLRPEFRAFPWEPDDDALRAWQRGRTGVPLVDAGMRQLWQS 360
Query: 348 GWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFD 407
GW+H+R+R+VV SF K L PW G ++FWDTL+DAD ++ + WQ+++G D +
Sbjct: 361 GWVHNRVRLVVGSFLAKNLLHPWWDGEQWFWDTLVDADEANNPVSWQWVAGCGADAAPYF 420
Query: 408 RIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPI 467
R+ NP+ + +FDP+G YVRRW+PE +E S YP PI
Sbjct: 421 RVFNPETQRERFDPDGVYVRRWVPE-----------------------AVEPLSGYPEPI 457
Query: 468 VRIDAAKCRLDEALSEM 484
V + ++ +A EM
Sbjct: 458 VDLKESRRHALDAYEEM 474
>gi|260765941|gb|ACX50001.1| cryptochrome 1 [Capsella bursa-pastoris]
Length = 143
Score = 261 bits (668), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 132/143 (92%), Positives = 137/143 (95%)
Query: 334 YPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGW 393
YPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGW
Sbjct: 1 YPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGW 60
Query: 394 QYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQ 453
QYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVRRWLPEL+RLPT+WIHHPWNAPESVLQ
Sbjct: 61 QYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQ 120
Query: 454 AAGIELGSNYPFPIVRIDAAKCR 476
AAGIELGSNYP PIV +D AK R
Sbjct: 121 AAGIELGSNYPRPIVGLDEAKAR 143
>gi|158424448|ref|YP_001525740.1| deoxyribodipyrimidine photolyase [Azorhizobium caulinodans ORS 571]
gi|158331337|dbj|BAF88822.1| deoxyribodipyrimidine photolyase [Azorhizobium caulinodans ORS 571]
Length = 484
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 170/477 (35%), Positives = 242/477 (50%), Gaps = 10/477 (2%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHS 59
MS G +++WFR DLR+ DNPALAA +G V+A+++ + G G + WWL S
Sbjct: 1 MSAAGTAVIWFRDDLRLADNPALAAAAASGRRVLALYVLDEDSPGVRALGGAALWWLAGS 60
Query: 60 LSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
L L + L G LV +R ++ + +V +A GA + FN D L
Sbjct: 61 LRALKAELGQHGVPLVLRRG-EAGRIVPDVARAAGADLVAFNWRAGKAEQAVDEAVARHL 119
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGD 179
+A G+ V LL+ P V G TF++F + LP R+N
Sbjct: 120 SAAGVTVERTLGHLLHAPGSVRGTGGGLPRTFSSFMRAAVKG--RDIGRTLPVPRLNGAA 177
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
C + ++ L W PG + A L F+ L Y + R + D
Sbjct: 178 PLPCDDLEEWALEPTQPDWAGGLRTTWHPGEAAARARLEAFLADGLAGYGEGRDRPDQTH 237
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
S LSP+L FGE+S R+V + A + + V F + RE+S ++ F
Sbjct: 238 VSRLSPYLRFGEISPRQV-----LLAALAAGDAGTVPAKDVQKFEAELYWREFSHHLLFA 292
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P R L F W G K W++GRTGYP+VDAGMR+LW TGW+H+R+R++V+
Sbjct: 293 VPDLARRNLQASFDAFPWRECPGDLKKWQKGRTGYPIVDAGMRQLWQTGWMHNRVRMIVA 352
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF K L LPW+ G +FWDTL+DADL ++A WQ+++G+ D + RI NP +G KF
Sbjct: 353 SFLCKHLLLPWQDGELWFWDTLVDADLANNAASWQWVAGSGADAAPYFRIFNPVLQGEKF 412
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
DP G YVR ++PEL +P IH PW+AP L G+ LG +YP P+V AA+ R
Sbjct: 413 DPEGTYVRTYVPELKDVPARLIHQPWSAPLE-LTRYGVRLGRDYPEPMVEHGAARDR 468
>gi|167628126|ref|YP_001678626.1| deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167598127|gb|ABZ88125.1| Deoxyribodipyrimidine photo-lyase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 464
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 165/482 (34%), Positives = 254/482 (52%), Gaps = 31/482 (6%)
Query: 4 RGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHL 63
+ +I WFR+DLR+ DNPAL +A I +FI +E G S+ WL HSLS L
Sbjct: 3 KKIAIHWFRQDLRLADNPALHQASQADETITIFILDENQE----IGGASKLWLHHSLSSL 58
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
SL + S + + + ++VK T ++N YD S+ RD + K+ L Q
Sbjct: 59 SKSLNNKLNFF----SGNPLEIIKKLVKENNITDFYWNRCYDKYSIDRDTQIKQFLQEQD 114
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPP----KRINSGD 179
I V SFN LL EPW G + + F+++ + + + P K++ + D
Sbjct: 115 INVSSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIVKPSFNSLKKLETAD 174
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
D+L + N + W G + + L F++G + EY R + +
Sbjct: 175 ----ELDSLKLLEPKLSWQNII--DQWQIGEDASHQILEEFLDGKVKEYKIARDFMSTDS 228
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP+LHFGE+S ++F+ V+ NE + F+K + R++S Y +
Sbjct: 229 TSKLSPYLHFGEISPNQIFNAVQSLDYIGNNEEH---------FIKELVWRDFSYYQIYY 279
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
+P H + + F W D K W+ G+TG P+VDAGMRELW TG++H+R+R++V+
Sbjct: 280 YPELHNKNINQKFDSFEWDNDATLLKRWQTGQTGIPIVDAGMRELWQTGYMHNRVRMIVA 339
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF +K + W++G K+F+DTL DAD S+ WQ+++G D + RI NP + KF
Sbjct: 340 SFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNPVLQAEKF 399
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
+ EY+R+++PEL LP + + PW A VLQ +G++LG NYP P+ ID K R D+
Sbjct: 400 EA-YEYIRKYVPELKLLPNKLLAKPWEASNLVLQESGVKLGDNYPTPL--IDLKKSR-DK 455
Query: 480 AL 481
AL
Sbjct: 456 AL 457
>gi|359407531|ref|ZP_09200008.1| deoxyribodipyrimidine photolyase [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356677570|gb|EHI49914.1| deoxyribodipyrimidine photolyase [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 487
Score = 259 bits (661), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 159/497 (31%), Positives = 261/497 (52%), Gaps = 49/497 (9%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIW--------APEEEGPYY----PGRVSR 53
+I WFR DLR+ DNPAL + ++G VI ++I + + P + GR +R
Sbjct: 3 VTIHWFRSDLRLSDNPALTSAAQSGEVICLYILDVIDDRLPSVHIDAPIHQTNASGRATR 62
Query: 54 WWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDH 113
WL +L L++ L L+ KR +++ L +++ TGA ++ Y P D
Sbjct: 63 VWLHKALDSLNADLEG---HLLLKRGP-ALTILRQLIAQTGADKVTMTRRYAPHHSASDL 118
Query: 114 RAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEK-CLSMPFDPDAPL--- 169
+ ++AL+ G+ V + +LL+EP V G P+ F F+ + CL+
Sbjct: 119 QIEQALSEDGVTVSVISGNLLWEPEQVTKQDGTPYKVFTPFYRRGCLAAAPPRRPLPRPE 178
Query: 170 -----LPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFIN-- 222
LP ++ P L + ++ G W+ + A AL+ F+
Sbjct: 179 ISFVELPDGGQTLDELELIPP--LPWAEQVTSG--------WTISEAGAQDALSAFVTPD 228
Query: 223 --GPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGN-KAGDES 279
L Y+ R TS LSP+L FG++S + ++ A EG+ D +
Sbjct: 229 PQTGLGCYADGRNLPAKPATSRLSPYLKFGQISPHQAWY---------AAEGSFHDSDVN 279
Query: 280 VNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDA 339
+++F +G RE+S ++ ++P PL F W+ + + +AW+ G+TGYP+VDA
Sbjct: 280 LDMFRSELGWREFSYHLLKSNPELKTTPLQAKFANFDWLDNSEHLRAWQIGQTGYPIVDA 339
Query: 340 GMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGT 399
GMREL+ TG++H+R+R++V SF VK L L W G +FWD L DAD S+ WQ+I+G
Sbjct: 340 GMRELYQTGYMHNRVRMIVGSFLVKNLLLDWHHGEAWFWDCLFDADAASNTASWQWIAGC 399
Query: 400 IPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIEL 459
D + R+ NP +G KFDP+G+Y RR++PELA +P++++ +P++AP VL AG+ L
Sbjct: 400 GADAAPYFRVFNPITQGQKFDPDGQYTRRFVPELAEMPSKYLFNPFDAPREVLMRAGVRL 459
Query: 460 GSNYPFPIVRIDAAKCR 476
G+ YP P+V + +++ R
Sbjct: 460 GATYPRPLVDVKSSRLR 476
>gi|90020376|ref|YP_526203.1| deoxyribodipyrimidine photo-lyase type I [Saccharophagus degradans
2-40]
gi|89949976|gb|ABD79991.1| Deoxyribodipyrimidine photo-lyase type I [Saccharophagus degradans
2-40]
Length = 483
Score = 258 bits (659), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 150/474 (31%), Positives = 237/474 (50%), Gaps = 26/474 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRA----GAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHL 63
++W +LR+ DNPAL A V + G V+ +I + P+ + WWL HSL+
Sbjct: 4 LLWLSNNLRLSDNPALHAAVDSADANGEVLPAYI--KDTANPWPIQGAAAWWLHHSLAAF 61
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
+S+++ G +++ D + + E++ ++ + ++P + +
Sbjct: 62 TNSIKNKG-GVLSLFEGDPATLVPELISQNKIDAVYLSQGFEPYEVQLQANIHKWCKQHN 120
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I + F LL P + QG+PF F +++ L+ P A +P +
Sbjct: 121 IECKRFAGHLLLNPDTHLNKQGKPFQVFTPYYKAALATHTIPRAKPIPSNLAKVWAAKKL 180
Query: 184 PSDTLVFEDESEKGSN--ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
P + + + N W PG A K L I + Y+++R TS
Sbjct: 181 PKSVALNKLKLLPNLNWADQFNSQWQPGEEGAHKNLREAIEDKIASYTRDRDFPAVDGTS 240
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LS HL FGE+S R++ W + E FL+ + R++S + + P
Sbjct: 241 LLSAHLRFGEISPRQI----------WQQVATQMDGEQCAPFLRQLMWRDFSYALLHHWP 290
Query: 302 YSHERPLLGHLKFFSWVVDEG-----YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
+ ++ + F W AW+ G TGYP+VDAGMR+LW TGW+H+R+R+
Sbjct: 291 HIPQQAFKQQFEKFPWQKASNKNVAKQLHAWQTGTTGYPIVDAGMRQLWQTGWMHNRVRM 350
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+V+SF K L++ W G K+FWDTL+DADL ++ GWQ+++G D + RI NP +G
Sbjct: 351 IVASFLTKHLRIHWHEGAKWFWDTLVDADLANNTAGWQWVAGCGADAAPYFRIFNPVLQG 410
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSN--YPFPIV 468
KFD GEY++ W+PELA LP ++IH PW AP+ +LQ AGI LG+N YP PIV
Sbjct: 411 EKFDKQGEYIKTWVPELAALPAKFIHAPWLAPQDILQTAGISLGNNSTYPLPIV 464
>gi|357032216|ref|ZP_09094156.1| deoxyribodipyrimidine photolyase [Gluconobacter morbifer G707]
gi|356414443|gb|EHH68090.1| deoxyribodipyrimidine photolyase [Gluconobacter morbifer G707]
Length = 481
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 161/474 (33%), Positives = 240/474 (50%), Gaps = 17/474 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
IV FR DLR+ D+PAL +GA V+ V++ E PG SRWWL +L+ L +
Sbjct: 12 IVCFRDDLRMADHPALHEAAASGAPVLCVYVLDDETSDLPPPGAASRWWLHGTLADLRGA 71
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L G +L+T L + + T A ++++H +D R L +G+ V
Sbjct: 72 LEKRGGTLLTLGGPLE-KILPRLAEETNARCIYWHHRLHEKERQQDERLIRTLNHKGVEV 130
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWE--KCLSMPFDPDAPL-LPPKRINSGDMSRC 183
R+ +L +P + +G + + +FW+ + ++P D P P R+ M
Sbjct: 131 RAQWGSVLLDPERIRTKEGGFYRVYTSFWKALQGQAVPEPLDLPSDFPFFRVAPSLMKTD 190
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
D + L + W PG A + LT F++ + Y + R TS L
Sbjct: 191 RLDEAALLPRHPDWAGGLRS-TWEPGEREAHEHLTDFLHHEVDHYGRGRDLMAEEGTSRL 249
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKA-GDESVNLFLKSIGLREYSRYMSFNHPY 302
SP+L G +S R+V WA G E +F IG RE++RY ++ P
Sbjct: 250 SPYLASGAISPRQV----------WATVGEHGLNGEDARIFRSEIGWREFARYTLYHFPQ 299
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
ER L SW +AW++G+TG P+VDA MR+LW TGW+H+R R++V SF
Sbjct: 300 LCERNLNRKFDALSWRRAPEDLRAWQKGQTGIPVVDAAMRQLWQTGWMHNRARMIVGSFL 359
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
K L + WR G +FWDTL+DAD ++ + WQ+++GT D F R+ NP + KFDP+
Sbjct: 360 TKHLLVDWREGEAWFWDTLVDADRANNTMNWQWVAGTGIDAAPFFRVFNPSRQAEKFDPD 419
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
G+Y+RRW+PELA+L + + PW A L AAG+ LG YP PIV + + R
Sbjct: 420 GDYIRRWVPELAKLSGKALVEPWKAQAEDLHAAGVTLGKTYPHPIVDLAEGRSR 473
>gi|255081582|ref|XP_002508013.1| predicted protein [Micromonas sp. RCC299]
gi|226523289|gb|ACO69271.1| predicted protein [Micromonas sp. RCC299]
Length = 450
Score = 257 bits (656), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 172/478 (35%), Positives = 246/478 (51%), Gaps = 45/478 (9%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFR+DLRV DNPAL A R G V+A F+W P+EEG + G +R+WL H+L L +S
Sbjct: 1 VVWFRQDLRVRDNPALHAAARTGRPVVACFVWCPKEEGGWPMGGATRYWLHHALGSLQAS 60
Query: 67 LRSLGTS-----LVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTA 121
LR+ + S+ S L VV+ GA ++ N +Y+P + RD + +A
Sbjct: 61 LRARNAGGTSSPSSSSSSSSSFDELAAVVRECGAKDVYCNRVYEPWKIARDRECERKFSA 120
Query: 122 Q-GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCL-SMPFDPDAPLLPPKRINSGD 179
+ + RSFNA +LYEPWD +P AT A W S+ F L R+
Sbjct: 121 ELNVRFRSFNAGVLYEPWDA-----RPDATDDACWNSGYGSVRFF----LRGCARLGEPP 171
Query: 180 MS---------RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSK 230
R P+D G + S G SNA KA S
Sbjct: 172 PPLPPPPTMRVRLPADKRARSYTEHGGVQSNPGNGQSNGQSNAPKA------------ST 219
Query: 231 NRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLR 290
R +AD TT+ +SP++ GE+SVR+V+H + QV K+ S +FL+ + R
Sbjct: 220 ERFRADVRTTARISPYVRHGELSVREVYHSAKAIQVG----SRKSRARSAAVFLRRLAWR 275
Query: 291 EYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWL 350
+ + + + P + PL W + AW+ G+TGYPLVDAGMRELWATG++
Sbjct: 276 DLAYWSLWRFPRLCDEPLRPQYATQWWALPWDPV-AWQFGQTGYPLVDAGMRELWATGYV 334
Query: 351 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRID 410
+ +R VV+ F ++ L + WR G +F DTL+DAD+ WQ +G ++ +
Sbjct: 335 PNYVRHVVAGFLIEYLNVDWRHGQLWFHDTLVDADVAIQGFMWQ--NGGHSGMDQWNFVM 392
Query: 411 NPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
+P + DP+GEYVRRW PEL+ LP E++H PW AP + L AA + LG +YP IV
Sbjct: 393 HPVYAAKSADPDGEYVRRWCPELSGLPREYVHCPWEAPATTLAAANVALGRHYPKRIV 450
>gi|393770609|ref|ZP_10359088.1| deoxyribodipyrimidine photo-lyase [Novosphingobium sp. Rr 2-17]
gi|392723956|gb|EIZ81342.1| deoxyribodipyrimidine photo-lyase [Novosphingobium sp. Rr 2-17]
Length = 465
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 160/450 (35%), Positives = 226/450 (50%), Gaps = 41/450 (9%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IVW RRDLR+ + PA A G VI V++ E + G SRWWL HSL LD +
Sbjct: 12 TIVWLRRDLRLCNQPAFAEAAGKGPVIPVYVLDDEAARHHAMGGASRWWLHHSLDSLDKA 71
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
LR+ G+ L+ ++ S + L + + TGA ++ H Y+P R E A+ + +
Sbjct: 72 LRAKGSRLILRKGR-SETVLASLAEETGAREIHAVHHYEPWW-----RNAEKAVAKAVTL 125
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKC---------LSMPFDPDAPLLPPKRINS 177
R + + L P + G PF + FW P DAP PK
Sbjct: 126 RLHHGNYLAPPGSITTGAGTPFKIYTPFWRAMREHMPPPQPHDPPAKLDAPAHWPKSDTL 185
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
D PS + + + W PG + A K L F+ Y R
Sbjct: 186 DDWKLLPS---------KPDWAGGMKKTWQPGEAGAAKHLDAFVE-EASRYEAQRNLPSV 235
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
+S LSPHLHFGE+S +V+H V A+EG SVN FL + R+Y++ +
Sbjct: 236 DGSSMLSPHLHFGEISPAQVWHAV-------ADEGG-----SVNTFLGEVAWRDYAQNVI 283
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGY---FKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
P R F W + +AW+QGRTGYP+VDAGMR+LWATGW+H+R+
Sbjct: 284 LQFPDYATRSARDPFGAFPWRTGQAADADLQAWQQGRTGYPIVDAGMRQLWATGWMHNRV 343
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R++ +SF +K L + WR G ++FWDTL+DAD S+A+ WQ+++G+ D F RI P
Sbjct: 344 RMIAASFLIKHLLIDWREGERWFWDTLVDADYGSNAVNWQWVTGSGIDANMFPRIMAPLS 403
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHP 444
+ KFD G Y+R W+PELA+L IH P
Sbjct: 404 QSEKFDAAG-YIREWVPELAKLSDAEIHDP 432
>gi|349688251|ref|ZP_08899393.1| deoxyribodipyrimidine photo-lyase [Gluconacetobacter oboediens
174Bp2]
Length = 461
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 165/479 (34%), Positives = 231/479 (48%), Gaps = 63/479 (13%)
Query: 4 RGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYP-GRVSRWWLKHSLSH 62
R +I+WFR DLR+ DNPAL G VI ++I P +P G +WWL +L+
Sbjct: 16 RAPTIMWFRDDLRLMDNPALCDAAARGPVICLYI-----HDPAFPLGGAEKWWLHGALTA 70
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
LD + G L + DS +L +V TGA + +N Y P + D K AL A+
Sbjct: 71 LDHDSGACGGRLWIM-AGDSRENLSWLVGQTGAEGVVWNRRYGPHARQVDADIKAALKAR 129
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSM-------------PFDPDAPL 169
GI S ++L+EPW V QG PF F +W +M F P
Sbjct: 130 GIDACSHPGNMLHEPWQVRTKQGTPFRVFTPWWRAVQAMGAPLPPLPAPVRTTFAPVPSA 189
Query: 170 LPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYS 229
+ + + D++ P V D + L W PG + A L +F+ + Y+
Sbjct: 190 VADRLVAVPDLALLP----VRPDWAGG-----LRGQWQPGEAAAHARLDSFVAEQVHGYA 240
Query: 230 KNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGL 289
R TS LSP+L FG VS R+++H V + GD+ FL +G
Sbjct: 241 TRRELPAQPATSGLSPYLRFGHVSARQIWHAV---------DATGQGDQDTACFLSEVGW 291
Query: 290 REYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGW 349
R++++ F+ P L W D +AW+ G+TGYP++DAGMRELW TGW
Sbjct: 292 RDFAQSTLFDFPDLGTTNLRSEFNGMPWRHDPAALRAWQAGKTGYPIIDAGMRELWHTGW 351
Query: 350 LHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRI 409
+H+R+R++V+SF K L WR G +F DTL+DAD + RI
Sbjct: 352 MHNRVRMIVASFLTKHLLTDWRAGAAWFADTLVDADAAP-----------------YFRI 394
Query: 410 DNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
NP +G KFDP GEYVR+W+PE+ARLP ++IH PW AG + YP PIV
Sbjct: 395 FNPVSQGEKFDPAGEYVRKWVPEIARLPDKYIHAPWK--------AGSVAPAGYPPPIV 445
>gi|58039440|ref|YP_191404.1| deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H]
gi|58001854|gb|AAW60748.1| Deoxyribodipyrimidine photolyase [Gluconobacter oxydans 621H]
Length = 479
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 160/483 (33%), Positives = 249/483 (51%), Gaps = 17/483 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFR DLR+ D+PAL +G +I ++I + G +RWWL+ +L+ L
Sbjct: 9 AIVWFRDDLRMADHPALHEAAASGWPLICLYILDDVTPALHPLGAAARWWLRGALADLRR 68
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L G +L+T S + L ++ K T A + ++H +D+R + L Q
Sbjct: 69 NLEKQGGTLLTL-SGSAEKLLPQLAKQTDAASVHWHHRLHERERAQDNRIRRTLEEQECE 127
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM-SRCP 184
V + +L +P V QG + +FW K L P+ PL P R++ + +
Sbjct: 128 VHAQWGTVLVDPDTVQTKQGGFYKVCGSFW-KALQTHAVPE-PLEAPSRLSFHAIPASVL 185
Query: 185 SDTLVFEDE---SEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
SD + ED A + W PG + + L F+ + Y + R + TS
Sbjct: 186 SDARLNEDSLCPQAPDWAAGFRKTWEPGEAEGQEHLEDFLKNSVAGYPRGRDRVAEEGTS 245
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+L G VS R+V+ A + + A + +FL +G RE++RY ++ P
Sbjct: 246 RLSPYLASGAVSPRQVWA---------ALQKHGAHTDGPRIFLSELGWREFARYTLYHLP 296
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
L W KAW++G+TG P+VDAGMR+LW TGW+H+R R++V SF
Sbjct: 297 KLPFENLSPKFSGMHWRRSAADLKAWQRGQTGVPIVDAGMRQLWQTGWMHNRARMIVGSF 356
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L + W+ G +F DTL+DAD ++A+ WQ+++GT + F RI NP + KFDP
Sbjct: 357 LTKHLLIDWKEGDAWFRDTLVDADFANNAMNWQWVAGTGIEATPFFRIFNPTRQAEKFDP 416
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
NG+Y+R+W+PEL RL + + PW A + L+ AG+ LG +YP PIV + + R +A
Sbjct: 417 NGDYIRQWVPELRRLSGKALFEPWAAKDEELEKAGVRLGKSYPRPIVDLKEGRDRALQAF 476
Query: 482 SEM 484
+
Sbjct: 477 RSL 479
>gi|414865853|tpg|DAA44410.1| TPA: hypothetical protein ZEAMMB73_760455 [Zea mays]
Length = 397
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/174 (70%), Positives = 144/174 (82%), Gaps = 1/174 (0%)
Query: 151 FAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGW 210
F FW +CL MP L P KRINSGD+SRCP D LVFEDESE+GSNALLARAWSPGW
Sbjct: 151 FTMFWNRCLCMPDPAAPLLPP-KRINSGDLSRCPWDELVFEDESERGSNALLARAWSPGW 209
Query: 211 SNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWAN 270
NADKALT F+NGPL+++S NR+KADSA+TS LSP+LHFGE+SVRKVFH VR+K++ W+N
Sbjct: 210 QNADKALTAFLNGPLMDHSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKRLMWSN 269
Query: 271 EGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYF 324
+ N AG+ES LFL SIGLREY RY++FNHPYSHE+PLL HL+FF WVV+E Y
Sbjct: 270 DDNHAGEESCTLFLCSIGLREYLRYLTFNHPYSHEKPLLSHLRFFPWVVNEVYI 323
>gi|341606667|gb|AEK83436.1| At4G08920-like protein [Capsella grandiflora]
Length = 139
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 128/139 (92%), Positives = 133/139 (95%)
Query: 338 DAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYIS 397
DAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYI+
Sbjct: 1 DAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYIT 60
Query: 398 GTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGI 457
GT+PD R FDRIDNPQFEGYKFDPNGEYVRRWLPEL+RLPT+WIHHPWNAPESVLQAAGI
Sbjct: 61 GTLPDSREFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGI 120
Query: 458 ELGSNYPFPIVRIDAAKCR 476
ELGSNYP PIV +D AK R
Sbjct: 121 ELGSNYPRPIVGLDEAKAR 139
>gi|47207105|emb|CAF92156.1| unnamed protein product [Tetraodon nigroviridis]
Length = 755
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 174/500 (34%), Positives = 249/500 (49%), Gaps = 57/500 (11%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEE-GP----YYPGRVSRWWLKHSLS 61
++WFRRDLR+ DNPAL A + GA VI +FIW+PEEE GP G ++WL +LS
Sbjct: 106 LLWFRRDLRLCDNPALTAALEVGAPVIPIFIWSPEEEEGPAGVTVATGGACKYWLHQALS 165
Query: 62 HLDSSLRSLGTSLVTKRSTD-------SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHR 114
L +SL G+ LV RS + S+ +L E+VK TGA + N LY+P RDH
Sbjct: 166 CLCASLERNGSHLVFLRSAEAGGEGGSSLQTLKELVKETGARTVMANALYEPWLKDRDHA 225
Query: 115 AKEALTAQGIAVRSFNADLLYEPWDV-NDAQG-QPFATFAAFWEKC-------LSMPFDP 165
A AL G+ + F++ L +P+ V + G + + + F C L P +P
Sbjct: 226 AAVALWKSGVECKMFHSYCLRDPYSVRTEGVGLRGIGSVSHFLSCCRQNPGPALGAPLEP 285
Query: 166 DAPLLPPKRINSG------DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTT 219
L P G ++R P +D + A + ++W A L
Sbjct: 286 PTALPVPAHWPRGAPLEALGLARMPRR----KDGTTVDWAASIRKSWDFSEEGAHARLEA 341
Query: 220 FINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDES 279
F+ + Y K +AD+ TS +SP+LHFG++S R W KA
Sbjct: 342 FLGDGVYRYDKESGRADAPNTSCVSPYLHFGQLSPR------------WVLWDAKAARCR 389
Query: 280 VNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDA 339
F + + R+ + + P L K W D + KAW++G TGYPLVDA
Sbjct: 390 PPKFQRKLAWRDLAYWQLSLFPELPWESLRPPYKALRWSSDRRHLKAWQRGGTGYPLVDA 449
Query: 340 GMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYF-----------WDTLLDADLES 388
MR+LW TGW+++ +R VV+SF + L LPW+ G ++F DTL+DAD+
Sbjct: 450 AMRQLWLTGWMNNYMRHVVASFLIAYLHLPWQEGYRWFQVRNGCRGDTGQDTLVDADVAI 509
Query: 389 DALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAP 448
DA+ WQ +G + ++ + +P DP+G YVR+W PEL+ LP E IH PW P
Sbjct: 510 DAMMWQ--NGGMCGLDHWNFVMHPVDAAMTCDPDGSYVRKWCPELSGLPDELIHKPWKCP 567
Query: 449 ESVLQAAGIELGSNYPFPIV 468
SVL+ AG+ LG YP IV
Sbjct: 568 ASVLRRAGVVLGQTYPERIV 587
>gi|403525553|ref|YP_006660440.1| deoxyribodipyrimidine photolyase [Arthrobacter sp. Rue61a]
gi|403227980|gb|AFR27402.1| putative deoxyribodipyrimidine photolyase [Arthrobacter sp. Rue61a]
Length = 465
Score = 252 bits (644), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 158/447 (35%), Positives = 228/447 (51%), Gaps = 33/447 (7%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
SIVWFR DLRV DNPAL A V GA +A+++ E G G +RWWL HSL+ L
Sbjct: 4 SIVWFRDDLRVADNPALRAAVDDGAAVALYVLDEESPGIRPHGGAARWWLHHSLTALRGD 63
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L LG L+ +R + L E A GA L++N Y D K G+ V
Sbjct: 64 LDKLGVPLLLRRGP-ATDVLRETTTAIGAGGLYWNRRYGSAERTVDADIKAWAGEAGLHV 122
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRIN--SGDMSRCP 184
SF A LL+EPW+V G + F FW + F PL P+ + +G + C
Sbjct: 123 SSFQASLLHEPWEVTTKTGGQYKVFTPFWRTVSAQDFR--EPLAVPEAGHGFTGKLPVCD 180
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
++ + LA W+PG + K L F+ L YS+ R + D+ +S LS
Sbjct: 181 QLESWQLLPTKPDWSGGLAEMWTPGAAAGHKRLARFVADGLSNYSEGRNRPDTDGSSCLS 240
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
P+L +GE+S +V+H + K+ ES +++ +G RE+ + F++P
Sbjct: 241 PYLRWGELSPFEVWHALGSKR-----------SESASIYASELGWREFCWHQYFHNPQLA 289
Query: 305 ERPLLGHLKFFSWVVDEGY-----------------FKAWRQGRTGYPLVDAGMRELWAT 347
L F W F+AW+QGRTG+P+VDAG R+LW T
Sbjct: 290 TANLRPEFDRFPWAWPGNNGNGGGGRHPGHESAPEEFRAWQQGRTGFPMVDAGQRQLWHT 349
Query: 348 GWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFD 407
GW+H+R+R+V +SF VK L + W+ G ++FWDTL+DAD S+ WQ+++G+ D F
Sbjct: 350 GWMHNRVRMVAASFLVKNLGIHWQLGEQWFWDTLVDADPASNPANWQWVAGSGADASPFF 409
Query: 408 RIDNPQFEGYKFDPNGEYVRRWLPELA 434
RI NP+ + KFDP G+Y+ W+PE
Sbjct: 410 RIFNPEAQRVKFDPQGKYIAHWIPEFG 436
>gi|364501960|dbj|BAL41964.1| CRY1, partial [Cardamine glauca]
Length = 145
Score = 252 bits (644), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 120/145 (82%), Positives = 135/145 (93%)
Query: 13 RDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGT 72
RDLRVEDNPALAA VRAG VIA+F+WAPEEEG Y+PGRVSRWWLK+SL+ LDSSLRSLGT
Sbjct: 1 RDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGT 60
Query: 73 SLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNAD 132
L+TKRSTDSVSSLL+VVK+TGA+Q+FFNHLYDPLSLVRDHRAK+ LTAQGIAVRSFNAD
Sbjct: 61 YLITKRSTDSVSSLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNAD 120
Query: 133 LLYEPWDVNDAQGQPFATFAAFWEK 157
LLYEPW+V D G+PF+ FAAFWE+
Sbjct: 121 LLYEPWEVTDELGRPFSMFAAFWER 145
>gi|364501867|dbj|BAL41922.1| CRY1, partial [Cardamine nipponica]
gi|364501869|dbj|BAL41923.1| CRY1, partial [Cardamine nipponica]
gi|364501871|dbj|BAL41924.1| CRY1, partial [Cardamine nipponica]
gi|364501873|dbj|BAL41925.1| CRY1, partial [Cardamine nipponica]
gi|364501875|dbj|BAL41926.1| CRY1, partial [Cardamine nipponica]
gi|364501877|dbj|BAL41927.1| CRY1, partial [Cardamine nipponica]
gi|364501879|dbj|BAL41928.1| CRY1, partial [Cardamine nipponica]
gi|364501881|dbj|BAL41929.1| CRY1, partial [Cardamine nipponica]
gi|364501883|dbj|BAL41930.1| CRY1, partial [Cardamine nipponica]
gi|364501885|dbj|BAL41931.1| CRY1, partial [Cardamine nipponica]
gi|364501887|dbj|BAL41932.1| CRY1, partial [Cardamine nipponica]
gi|364501889|dbj|BAL41933.1| CRY1, partial [Cardamine nipponica]
gi|364501891|dbj|BAL41934.1| CRY1, partial [Cardamine nipponica]
gi|364501893|dbj|BAL41935.1| CRY1, partial [Cardamine nipponica]
gi|364501895|dbj|BAL41936.1| CRY1, partial [Cardamine nipponica]
gi|364501897|dbj|BAL41937.1| CRY1, partial [Cardamine nipponica]
gi|364501899|dbj|BAL41938.1| CRY1, partial [Cardamine nipponica]
gi|364501903|dbj|BAL41940.1| CRY1, partial [Cardamine bellidifolia]
gi|364501905|dbj|BAL41941.1| CRY1, partial [Cardamine bellidifolia]
gi|364501907|dbj|BAL41942.1| CRY1, partial [Cardamine bellidifolia]
gi|364501909|dbj|BAL41943.1| CRY1, partial [Cardamine bellidifolia]
gi|364501911|dbj|BAL41944.1| CRY1, partial [Cardamine bellidifolia]
gi|364501913|dbj|BAL41945.1| CRY1, partial [Cardamine bellidifolia]
gi|364501915|dbj|BAL41946.1| CRY1, partial [Cardamine bellidifolia]
gi|364501917|dbj|BAL41947.1| CRY1, partial [Cardamine bellidifolia]
gi|364501919|dbj|BAL41948.1| CRY1, partial [Cardamine bellidifolia]
gi|364501921|dbj|BAL41949.1| CRY1, partial [Cardamine bellidifolia]
gi|364501923|dbj|BAL41950.1| CRY1, partial [Cardamine bellidifolia]
gi|364501925|dbj|BAL41951.1| CRY1, partial [Cardamine bellidifolia]
gi|364501927|dbj|BAL41952.1| CRY1, partial [Cardamine bellidifolia]
gi|364501931|dbj|BAL41954.1| CRY1, partial [Cardamine bellidifolia]
gi|364501933|dbj|BAL41955.1| CRY1, partial [Cardamine bellidifolia]
gi|364501935|dbj|BAL41956.1| CRY1, partial [Cardamine bellidifolia]
gi|364501937|dbj|BAL41957.1| CRY1, partial [Cardamine alpina]
gi|364501939|dbj|BAL41958.1| CRY1, partial [Cardamine alpina]
gi|364501941|dbj|BAL41959.1| CRY1, partial [Cardamine alpina]
Length = 145
Score = 251 bits (642), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 119/145 (82%), Positives = 135/145 (93%)
Query: 13 RDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGT 72
RDLRVEDNPALAA VRAG VIA+F+WAPEEEG Y+PGRVSRWWLK+SL+ LDSSLRSLGT
Sbjct: 1 RDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGT 60
Query: 73 SLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNAD 132
L+TKRSTDSV+SLL+VVK+TGA+Q+FFNHLYDPLSLVRDHRAK+ LTAQGIAVRSFNAD
Sbjct: 61 CLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNAD 120
Query: 133 LLYEPWDVNDAQGQPFATFAAFWEK 157
LLYEPW+V D G+PF+ FAAFWE+
Sbjct: 121 LLYEPWEVTDELGRPFSMFAAFWER 145
>gi|88855888|ref|ZP_01130550.1| DNA photolyase [marine actinobacterium PHSC20C1]
gi|88814755|gb|EAR24615.1| DNA photolyase [marine actinobacterium PHSC20C1]
Length = 476
Score = 251 bits (642), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 166/449 (36%), Positives = 233/449 (51%), Gaps = 34/449 (7%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
SIVW R DLR+ DNPAL A ++ V+I +G G S+WWL HSL+ LD+
Sbjct: 9 SIVWLRNDLRLSDNPALTAATSEDRPLVVVYIHDETGDGIRPLGSASKWWLHHSLTALDA 68
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L+ LG L T + L +V GAT + +N Y + D K +L QG+
Sbjct: 69 ALQKLGGQL-TLSHGPATQVLPALVDELGATSVHWNRRYTAARDI-DAGLKASLREQGLT 126
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
V S +LL EPW + + QG+P+ F +W P DA L P ++ P+
Sbjct: 127 VESHQGNLLNEPWHIRNGQGEPYKVFTPYWRAAQERPVR-DA-LRAPTTTTLRWLAGSPA 184
Query: 186 DTLVFE--------DESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
+ E D +E L W+PG A L +F+ L +Y + A
Sbjct: 185 SDDIAEWNLLPTRPDWAEG-----LRETWTPGEQGARNRLESFVTERLADYHRRDEPAVD 239
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
A TS LSPHL FGE+S +++ R++ + N A + +V FL IG RE+S +
Sbjct: 240 A-TSGLSPHLRFGEISPTQIWQ--RLRGTGSTDVPNPARN-NVAKFLSEIGWREFSTALL 295
Query: 298 FNHPYSHERPLLGHLKFFSW--------VVDE----GYFKAWRQGRTGYPLVDAGMRELW 345
F++P F W VDE +AWR+GRTG PLVDAGMRELW
Sbjct: 296 FDNPRLATDSYRPAYNAFPWGYTVDQIGGVDEPAGVSEVEAWRRGRTGIPLVDAGMRELW 355
Query: 346 ATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRA 405
TG +H+R+R+VV+SF +K L + WR G ++FWDTL+DAD S+ WQ+++G+ D
Sbjct: 356 HTGTMHNRVRMVVASFLIKNLLIDWRAGEQWFWDTLVDADEASNPANWQWVAGSGADAAP 415
Query: 406 FDRIDNPQFEGYKFDPNGEYVRRWLPELA 434
+ R+ NP + KFDP GEYV RW+PEL
Sbjct: 416 YFRVFNPILQQKKFDPAGEYVARWIPELG 444
>gi|364501901|dbj|BAL41939.1| CRY1, partial [Cardamine nipponica]
Length = 145
Score = 251 bits (641), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 119/145 (82%), Positives = 135/145 (93%)
Query: 13 RDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGT 72
RDLRVEDNPALAA VRAG VIA+F+WAPEEEG Y+PGRVSRWWLK+SL+ LDSSLRSLGT
Sbjct: 1 RDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGT 60
Query: 73 SLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNAD 132
L+TKRSTDSV+SLL+VVK+TGA+Q+FFNHLYDPLSLVRDHRAK+ LTAQGIAVRSFNAD
Sbjct: 61 YLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNAD 120
Query: 133 LLYEPWDVNDAQGQPFATFAAFWEK 157
LLYEPW+V D G+PF+ FAAFWE+
Sbjct: 121 LLYEPWEVTDELGRPFSMFAAFWER 145
>gi|364501929|dbj|BAL41953.1| CRY1, partial [Cardamine bellidifolia]
gi|364501943|dbj|BAL41960.1| CRY1, partial [Cardamine resedifolia]
gi|364501945|dbj|BAL41961.1| CRY1, partial [Cardamine resedifolia]
gi|364501947|dbj|BAL41962.1| CRY1, partial [Cardamine resedifolia]
gi|364501958|dbj|BAL41963.1| CRY1, partial [Cardamine resedifolia]
Length = 145
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 118/145 (81%), Positives = 135/145 (93%)
Query: 13 RDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGT 72
RDLRVEDNPALAA VRAG VIA+F+WAPEEEG Y+PGRVSRWWLK+SL+ LDSSLRSLGT
Sbjct: 1 RDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGT 60
Query: 73 SLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNAD 132
L+TKRSTDSV+SLL+VVK+TGA+Q+FFNHLYDPLSLVRDHRAK+ L+AQGIAVRSFNAD
Sbjct: 61 CLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLSAQGIAVRSFNAD 120
Query: 133 LLYEPWDVNDAQGQPFATFAAFWEK 157
LLYEPW+V D G+PF+ FAAFWE+
Sbjct: 121 LLYEPWEVTDELGRPFSMFAAFWER 145
>gi|108859871|emb|CAK26672.1| putative cryptochrome [Picea abies]
gi|108859873|emb|CAK26673.1| putative cryptochrome [Picea abies]
gi|108859875|emb|CAK26674.1| putative cryptochrome [Picea abies]
gi|108859879|emb|CAK26676.1| putative cryptochrome [Picea abies]
gi|108859881|emb|CAK26677.1| putative cryptochrome [Picea abies]
gi|108859883|emb|CAK26678.1| putative cryptochrome [Picea abies]
gi|108859885|emb|CAK26679.1| putative cryptochrome [Picea abies]
gi|108859887|emb|CAK26680.1| putative cryptochrome [Picea abies]
gi|108859889|emb|CAK26681.1| putative cryptochrome [Picea abies]
gi|108859891|emb|CAK26682.1| putative cryptochrome [Picea abies]
gi|108859893|emb|CAK26683.1| putative cryptochrome [Picea abies]
gi|108859899|emb|CAK26686.1| putative cryptochrome [Picea abies]
gi|108859901|emb|CAK26687.1| putative cryptochrome [Picea abies]
gi|108859903|emb|CAK26688.1| putative cryptochrome [Picea abies]
gi|108859907|emb|CAK26690.1| putative cryptochrome [Picea abies]
gi|108859909|emb|CAK26691.1| putative cryptochrome [Picea abies]
gi|108859911|emb|CAK26692.1| putative cryptochrome [Picea abies]
gi|108859917|emb|CAK26695.1| putative cryptochrome [Picea abies]
gi|108859921|emb|CAK26697.1| putative cryptochrome [Picea abies]
gi|108859923|emb|CAK26698.1| putative cryptochrome [Picea abies]
gi|108859925|emb|CAK26699.1| putative cryptochrome [Picea abies]
gi|108859927|emb|CAK26700.1| putative cryptochrome [Picea abies]
gi|108859933|emb|CAK26703.1| putative cryptochrome [Picea abies]
gi|108859935|emb|CAK26704.1| putative cryptochrome [Picea abies]
gi|108859937|emb|CAK26705.1| putative cryptochrome [Picea abies]
gi|108859939|emb|CAK26706.1| putative cryptochrome [Picea abies]
gi|108859941|emb|CAK26707.1| putative cryptochrome [Picea abies]
gi|108859943|emb|CAK26708.1| putative cryptochrome [Picea abies]
gi|108859949|emb|CAK26711.1| putative cryptochrome [Picea abies]
gi|108859951|emb|CAK26712.1| putative cryptochrome [Picea abies]
gi|108859953|emb|CAK26713.1| putative cryptochrome [Picea abies]
gi|108859955|emb|CAK26714.1| putative cryptochrome [Picea abies]
gi|108859957|emb|CAK26715.1| putative cryptochrome [Picea abies]
gi|108859959|emb|CAK26716.1| putative cryptochrome [Picea abies]
gi|108859961|emb|CAK26717.1| putative cryptochrome [Picea abies]
gi|108859963|emb|CAK26718.1| putative cryptochrome [Picea abies]
gi|108859965|emb|CAK26719.1| putative cryptochrome [Picea abies]
gi|108859967|emb|CAK26720.1| putative cryptochrome [Picea abies]
gi|108859973|emb|CAK26723.1| putative cryptochrome [Picea abies]
Length = 259
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 138/257 (53%), Positives = 173/257 (67%), Gaps = 14/257 (5%)
Query: 385 DLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHP 444
DLE DALGWQYISG +PDGR DRIDNPQFEGYKFDP GEYVRRWLPELARLPTEWIHHP
Sbjct: 1 DLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHP 60
Query: 445 WNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLG 504
W+AP +VLQAAG+ELGSNYP PIV I AK RL E LSEMWQ+EA +RA++ENGTEEGLG
Sbjct: 61 WDAPRAVLQAAGVELGSNYPLPIVEISTAKERLQEGLSEMWQREADARASLENGTEEGLG 120
Query: 505 DSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSLELRN 564
+S ++A + P QM+ EP RNN AR +DQ+VPS++ ++ R + + +
Sbjct: 121 ESLENANASLPD--QMDVDREPVRNNTHLAARSQDDQLVPSISNAVQRAYVGYTLSQAAS 178
Query: 565 SAEESRAEVPRN--------ANVNQEPRRDT--LNQGVLQTVHN-NNAFQQFNAAIVLAN 613
S+ +AEVP N A+ Q + T + +G+++ + N N + Q + N
Sbjct: 179 SSPSEQAEVPSNTDSGIASAASSQQFLGQSTWSMTRGLIEDLPNVTNDYAQMQ-VLDEQN 237
Query: 614 AEDSTAESSSTSRRERD 630
STA+SSS R D
Sbjct: 238 ESHSTADSSSILRGRDD 254
>gi|108859897|emb|CAK26685.1| putative cryptochrome [Picea abies]
Length = 259
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 122/194 (62%), Positives = 147/194 (75%), Gaps = 2/194 (1%)
Query: 385 DLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHP 444
DLE DALGWQYISG +PDGR DRIDNPQFEGYKFDP GEYVRRWLPELARLPTEWIHHP
Sbjct: 1 DLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHP 60
Query: 445 WNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLG 504
W+AP +VLQAAG+ELGSNYP PIV I AK RL E LSEMWQ+EA +RA++ENGTEEGLG
Sbjct: 61 WDAPRAVLQAAGVELGSNYPLPIVEISTAKERLQEGLSEMWQREADARASLENGTEEGLG 120
Query: 505 DSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSLELRN 564
+S ++A + P QM+ EP RNN AR +DQ+VPS++ ++ R + + +
Sbjct: 121 ESLENANASLPD--QMDVDREPVRNNTDLAARSQDDQLVPSISNAVQRAYVGYTLSQAAS 178
Query: 565 SAEESRAEVPRNAN 578
S+ +AEVP N +
Sbjct: 179 SSPSEQAEVPSNTD 192
>gi|357974946|ref|ZP_09138917.1| deoxyribodipyrimidine photo-lyase [Sphingomonas sp. KC8]
Length = 456
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 165/475 (34%), Positives = 234/475 (49%), Gaps = 36/475 (7%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
SI+WFR+DLR+ D AL A G V+ +++ E GP+ G RWWL HSLS L
Sbjct: 2 TSILWFRQDLRLADQRALVAAASEGPVVCLYVLDDERPGPWRIGGAQRWWLHHSLSALAD 61
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L G L+ +R D+V +L + GA ++ Y+P + EA A I
Sbjct: 62 ALVDRGAQLILRRG-DAVEEVLRLACEVGAARVHALRHYEPWW-----QDAEAALADRID 115
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
+ + L P V G + F FW + L P+ PL P RI + ++ P
Sbjct: 116 LHLHDGGTLAPPDRVRTGGGGRYRVFTPFW-RALKEQMPPELPLPAPDRIAT--VADHP- 171
Query: 186 DTLVFED----ESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
D+ +D + A W+PG A AL F+ + +Y R A +S
Sbjct: 172 DSDALDDWALLPTAPDWAAGFGDYWAPGEEGAKDALRNFLPN-ITDYDTARNLPSIAGSS 230
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSPHLHFGE+S V+H K FL+ +G R+++ + P
Sbjct: 231 RLSPHLHFGEISPATVWH-----------HAAKRARGEAEPFLREVGWRDFAANVIDILP 279
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
R F W E F AW +GRTGYP+VDAGMRELWATGW+H+R+R++ +SF
Sbjct: 280 DYGRRNGREAWDDFPWRDAEADFAAWTKGRTGYPIVDAGMRELWATGWMHNRVRMIAASF 339
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L + WR G ++FWDTL+DA+ ++A+ WQ+I+GT D F RI P + KFD
Sbjct: 340 LTKHLLIDWRRGERWFWDTLVDANYANNAVNWQWIAGTGIDSNPFGRIMAPILQSEKFD- 398
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
Y+R+W+PELA++P WIH P AG YP P++ A + R
Sbjct: 399 AAAYIRKWVPELAKVPEPWIHDP--------HEAGCA-PKGYPAPLIGHRAGRAR 444
>gi|424869859|ref|ZP_18293539.1| Deoxyribodipyrimidine photolyase [Leptospirillum sp. Group II
'C75']
gi|124514880|gb|EAY56391.1| Deoxyribodipyrimidine photolyase [Leptospirillum rubarum]
gi|387220321|gb|EIJ75034.1| Deoxyribodipyrimidine photolyase [Leptospirillum sp. Group II
'C75']
Length = 536
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 171/477 (35%), Positives = 237/477 (49%), Gaps = 19/477 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
SIVWFR +LR+ DNP L G ++ VFI P P WW SL LD S
Sbjct: 64 SIVWFRNNLRLSDNPPLREAAERGPLLPVFIGEPSRGA--SPEGARHWWRARSLRCLDHS 121
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L LG L+ R D L ++ ++ DP R + AL+ + +
Sbjct: 122 LSRLGAPLLFLRG-DPAILLPDLATRLKIDKILAMEAIDPDGRRTQSRLQSALSGKPVEF 180
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR--CP 184
F AD L P + + P+ F FW++ S P P R++ R P
Sbjct: 181 HLFPADYLVPPAGLPAERRSPWKVFTPFWQRAQSHLPPPLPLPAP-DRLDGIPFPRSETP 239
Query: 185 SDTLVFEDESEKGSNALLARA-WSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
D + E EK A R+ W PG A + L F+ L Y+ R D T+S L
Sbjct: 240 ED---WGWEPEKPDWAAEMRSFWDPGEEGARRRLNAFLEKRLKNYAVKRDFLDEDTSSLL 296
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SPHL GE+S+R V+ W+ + A +E FL +G RE+S ++ ++HP
Sbjct: 297 SPHLANGEISIRSVW---------WSIRESTAPEEDRAKFLSELGWREFSAHLMWHHPDL 347
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
+PL +W D AW++GRTG PLVDAGMR+L G+L +R+R+V SF V
Sbjct: 348 ATQPLQKGRPEIAWREDPSSLLAWQKGRTGIPLVDAGMRQLRRLGFLPNRVRMVAGSFLV 407
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WR G ++F D L+D D ++A WQ+ISG D + RI NP +G KFDP G
Sbjct: 408 KNLLIDWRKGREWFSDNLVDHDPANNAASWQWISGYGADAAPWFRIFNPVLQGEKFDPEG 467
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
YV+ +LPELAR+P ++H PW AP S+L AGI S Y PIV + ++ R +A
Sbjct: 468 RYVKTYLPELARIPPRYLHCPWTAPSSLLDNAGIGKDSPYRNPIVDLGLSRKRALQA 524
>gi|108859877|emb|CAK26675.1| putative cryptochrome [Picea abies]
gi|108859895|emb|CAK26684.1| putative cryptochrome [Picea abies]
gi|108859905|emb|CAK26689.1| putative cryptochrome [Picea abies]
gi|108859913|emb|CAK26693.1| putative cryptochrome [Picea abies]
gi|108859919|emb|CAK26696.1| putative cryptochrome [Picea abies]
gi|108859947|emb|CAK26710.1| putative cryptochrome [Picea abies]
gi|108859971|emb|CAK26722.1| putative cryptochrome [Picea abies]
Length = 259
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 122/194 (62%), Positives = 147/194 (75%), Gaps = 2/194 (1%)
Query: 385 DLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHP 444
DLE DALGWQYISG +PDGR DRIDNPQFEGYKFDP GEYVRRWLPELARLPTEWIHHP
Sbjct: 1 DLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHP 60
Query: 445 WNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLG 504
W+AP +VLQAAG+ELGSNYP PIV I AK RL E LSEMWQ+EA +RA++ENGTEEGLG
Sbjct: 61 WDAPRAVLQAAGVELGSNYPLPIVEISTAKERLQEGLSEMWQREADARASLENGTEEGLG 120
Query: 505 DSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSLELRN 564
+S ++A + P QM+ EP RNN AR +DQ+VPS++ ++ R + + +
Sbjct: 121 ESLENANASLPD--QMDVDREPVRNNTHLAARSQDDQLVPSISNAVQRAYVGYTLSQAAS 178
Query: 565 SAEESRAEVPRNAN 578
S+ +AEVP N +
Sbjct: 179 SSPSEQAEVPSNTD 192
>gi|301617517|ref|XP_002938187.1| PREDICTED: cryptochrome-2-like [Xenopus (Silurana) tropicalis]
Length = 862
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 161/483 (33%), Positives = 236/483 (48%), Gaps = 41/483 (8%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEG----PYYPGRVSRWWLKHSLSH 62
+VWFRRDLR+ DNPAL + + G VI VF+W EE G +++WL H+L
Sbjct: 233 LVWFRRDLRLHDNPALISALEHGVPVIPVFLWCINEETGQNFTLATGGATKYWLHHALLK 292
Query: 63 LDSSL-RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTA 121
L+ SL + G+ ++ + + L+ +V TGA + N +Y+P RD E L
Sbjct: 293 LNQSLIQRFGSHIIFRVARSCEEELVSLVHETGADTIIINAVYEPWLKERDDLISETLRR 352
Query: 122 QGIAVRSFNADLLYEPWDVNDAQG---QPFATFAAFWEKC-------LSMPFDPDAPLLP 171
G+ ++ ++ LYEP D +G + + + F C + MP D AP
Sbjct: 353 HGVELKKHHSYCLYEP-DSVSTEGVGLRGIGSVSHFMSCCKRNNSAPIGMPLD--APRCL 409
Query: 172 PKRINSGDMSRCPSDTLVFEDESEKGSNALL------ARAWSPGWSNADKALTTFINGPL 225
P N + DTL + L+ +W A L F+ +
Sbjct: 410 PAPCNWPESDHL--DTLELGKMPHRKDGTLIDWAVTIRESWDFSEDGAYTCLANFLQDGV 467
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
Y K +AD TS +SP+LHFG++S R V H + ++V FL+
Sbjct: 468 KHYEKESGRADKPYTSHISPYLHFGQISPRTVLHEAYFTK------------KNVPKFLR 515
Query: 286 SIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELW 345
+ R+ + ++ P P+ K W D + +AW++G TGYPLVDA MRELW
Sbjct: 516 KLAWRDLAYWLLILFPDMPSEPVRPAYKSQRWSSDLNHLRAWQKGLTGYPLVDAAMRELW 575
Query: 346 ATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRA 405
TGW+ + R VV+SF V L + W G ++F DTLLDAD+ +A+ WQ +G +
Sbjct: 576 LTGWMCNYSRHVVASFLVAYLHIHWVHGYRWFQDTLLDADVAINAMMWQ--NGGMSGLDH 633
Query: 406 FDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPF 465
++ + +P DP G YVR+W PELA LP E+IH PW S L+ AG+ LG NYP
Sbjct: 634 WNFVMHPVDSALTCDPYGSYVRKWCPELAGLPDEYIHKPWKCAPSQLRRAGVILGRNYPH 693
Query: 466 PIV 468
IV
Sbjct: 694 RIV 696
>gi|119960573|ref|YP_946305.1| deoxyribodipyrimidine photolyase [Arthrobacter aurescens TC1]
gi|119947432|gb|ABM06343.1| putative deoxyribodipyrimidine photolyase [Arthrobacter aurescens
TC1]
Length = 465
Score = 249 bits (635), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 161/451 (35%), Positives = 226/451 (50%), Gaps = 41/451 (9%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
SIVWFR DLRV DNPAL A V GA +A+++ E G G +RWWL HSL+ L
Sbjct: 4 SIVWFRDDLRVADNPALRAAVDDGAAVALYVLDEESPGIRPHGGAARWWLHHSLTALRGD 63
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L LG L+ +R + L E A GA L++N Y D K G+ V
Sbjct: 64 LDKLGVPLLLRRGP-ATDVLRETTTAIGAGGLYWNRRYGSAERTVDADIKAWAGEAGLHV 122
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP-- 184
SF A LL+EPW+V G + F FW + F PL P+ G + P
Sbjct: 123 SSFQASLLHEPWEVTTKTGGQYKVFTPFWRTVSAQDFR--EPLAVPE-AGHGFTGKLPVY 179
Query: 185 ----SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
S L+ G LA W+PG + K L F+ L YS+ R + D+ +
Sbjct: 180 DQLESWQLLPTKPDWSGG---LAEMWTPGAAAGHKRLARFVADGLSNYSEGRNRPDTDGS 236
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP+L +GE+S +V+H + K+ ES +++ +G RE+ + F++
Sbjct: 237 SCLSPYLRWGELSPFEVWHALGSKR-----------SESASIYASELGWREFCWHQYFHN 285
Query: 301 PYSHERPLLGHLKFFSWVVDEGY-----------------FKAWRQGRTGYPLVDAGMRE 343
P L F W F+AW+QGRTG+P+VDAG R+
Sbjct: 286 PQLATANLRPEFDRFPWAWPGKNGNGNGGRHPGHESAPEEFRAWQQGRTGFPMVDAGQRQ 345
Query: 344 LWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDG 403
LW TGW+H+R+R+V +SF VK L + W+ G ++FWDTL+DAD S+ WQ+++G+ D
Sbjct: 346 LWHTGWMHNRVRMVAASFLVKNLGIHWQLGEQWFWDTLVDADPASNPANWQWVAGSGADA 405
Query: 404 RAFDRIDNPQFEGYKFDPNGEYVRRWLPELA 434
F RI NP+ + KFDP G Y+ WLP+
Sbjct: 406 SPFFRIFNPEAQRVKFDPQGRYIAHWLPDFG 436
>gi|395493322|ref|ZP_10424901.1| deoxyribodipyrimidine photo-lyase [Sphingomonas sp. PAMC 26617]
Length = 456
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 155/443 (34%), Positives = 230/443 (51%), Gaps = 29/443 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
I+W RRDLR+ D PAL A + G VI V+I + Y G SRWWL HSL LDS L
Sbjct: 5 ILWLRRDLRLADQPALLAAINDGPVIPVYILDDDTPEKYAMGGASRWWLHHSLEGLDSDL 64
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
R G+ L+ +R V L ++ + TGATQ+ ++P R E A+ + +
Sbjct: 65 REKGSRLILRRGK-CVEVLAQLAEETGATQVHCIRHFEPW-----WRKAEEAVAKHLDLV 118
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
+ + L P + G + + FW + L P AP+ P +I + S+ P
Sbjct: 119 CHDGNYLARPGSITTGSGGQYKIYTPFW-RALKQHMPPPAPIHKPAKIPAP--SKWPKSD 175
Query: 188 LVFE---DESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
++ + ++ + + W+PG A L F +Y R +S LS
Sbjct: 176 VLADWTLLPTKPDWSTGFSDDWTPGEDAAHNRLNAF-KKQADDYDDTRNFPSQEGSSRLS 234
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP--- 301
PHLHFGE+S +V+H V A+ G SV++FL IG R+Y++ + +P
Sbjct: 235 PHLHFGELSAAQVWHAV-------ADVGG-----SVDVFLSEIGWRDYAQNVILQYPEYG 282
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ R + + S KAW+QGRTGYP+VDAGMR+LW TGW+H+R+R++ +SF
Sbjct: 283 SKNAREKYDAMPWRSGKDAHADLKAWQQGRTGYPIVDAGMRQLWKTGWMHNRVRMITASF 342
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
+K L + WR G ++FWD L+D D S+++ WQ+ +GT D F RI P + KFD
Sbjct: 343 LIKHLLIDWREGERWFWDCLVDGDYGSNSVNWQWTAGTGIDSNMFVRIMAPLVQSPKFD- 401
Query: 422 NGEYVRRWLPELARLPTEWIHHP 444
G Y+R W+PELA + + IH P
Sbjct: 402 AGAYIREWVPELADVKGDAIHDP 424
>gi|226315066|ref|YP_002774962.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
gi|226098016|dbj|BAH46458.1| deoxyribodipyrimidine photolyase [Brevibacillus brevis NBRC 100599]
Length = 484
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 163/495 (32%), Positives = 257/495 (51%), Gaps = 23/495 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLK---HSLSH 62
+IVWFRRDLR+ D+ AL A + G +I V+I E+ V L +++
Sbjct: 3 AIVWFRRDLRLHDHAALHAAMLTGDPIIPVYI---VEDSLCLSAAVGDKRLHAHFSAIAA 59
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
LD +L LG L+ +R + L ++ + TGA +LFFN Y P + RD E L+
Sbjct: 60 LDDALVQLGGRLLIRRG-EPQQVLCQLAQETGAEKLFFNRDYTPDARKRDELVSEVLSRH 118
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
G+ V + +L+EP ++ Q P+A F + ++P D P P + I +
Sbjct: 119 GVFVHACKDLVLHEPGEIMTKQRTPYAVFTPYRRVWQTLPKDRPFPQ-PTEWILFDRLKE 177
Query: 183 CPSDTLVFEDESEKGSNALLARAWSP---GWSNADKALTTFINGPLIEYSKNRRKADSAT 239
PS+ + + G N + W G A K L F++ + Y + R
Sbjct: 178 LPSEPVPTVEAF--GRNRPMGTEWEMEQFGERAARKRLQQFLDRDIYTYKEKRDMPGVNA 235
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LS L+ G +S+R V+H R+++V + G + S+ FL + RE+ + + +
Sbjct: 236 TSRLSFALNAGTLSIRTVYH--RVQEVLASARGEQVT--SIEAFLTELIWREFYQQVLYF 291
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
HP++ L + +W + F W QG TGYP+VDA M++L TGW+H+R+R++ +
Sbjct: 292 HPHTTNHAYLPQFEEVAWENKKDLFVRWCQGETGYPIVDAAMKQLNETGWMHNRLRMITA 351
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF K L + WRWGM YF L+D D ++ GWQ+ + T D + + RI NP +G KF
Sbjct: 352 SFLTKDLLVDWRWGMAYFAQQLIDFDEAANIGGWQWSASTGTDAQPYFRIFNPVTQGEKF 411
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
D +G +V+++LP L +P ++IH PW+ PE + + AG ++G +YP P V D A+ R
Sbjct: 412 DRDGVFVKKYLPVLREVPLQYIHKPWDMPEHIQEQAGCKIGFDYPLPCV--DHAQRR--- 466
Query: 480 ALSEMWQQEAASRAA 494
L+ QEA R A
Sbjct: 467 KLAMALFQEAKDRHA 481
>gi|108859915|emb|CAK26694.1| putative cryptochrome [Picea abies]
gi|108859929|emb|CAK26701.1| putative cryptochrome [Picea abies]
gi|108859931|emb|CAK26702.1| putative cryptochrome [Picea abies]
gi|108859945|emb|CAK26709.1| putative cryptochrome [Picea abies]
gi|108859969|emb|CAK26721.1| putative cryptochrome [Picea abies]
Length = 259
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 137/257 (53%), Positives = 172/257 (66%), Gaps = 14/257 (5%)
Query: 385 DLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHP 444
DLE DALGWQYISG +PDGR DRIDNPQFEGYKFDP GEYVRRWLPELARLPTEWIHHP
Sbjct: 1 DLECDALGWQYISGCLPDGREMDRIDNPQFEGYKFDPAGEYVRRWLPELARLPTEWIHHP 60
Query: 445 WNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLG 504
W+AP +VLQAAG+ELGSNYP PIV I AK RL E LSEMWQ+E +RA++ENGTEEGLG
Sbjct: 61 WDAPRAVLQAAGVELGSNYPLPIVEISTAKERLQEGLSEMWQRETDARASLENGTEEGLG 120
Query: 505 DSSDSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPSMTTSLVRVEEEESSLELRN 564
+S ++A + P QM+ EP RNN AR +DQ+VPS++ ++ R + + +
Sbjct: 121 ESLENANASLPD--QMDVDREPVRNNTHLAARSQDDQLVPSISNAVQRAYVGYTLSQAAS 178
Query: 565 SAEESRAEVPRN--------ANVNQEPRRDT--LNQGVLQTVHN-NNAFQQFNAAIVLAN 613
S+ +AEVP N A+ Q + T + +G+++ + N N + Q + N
Sbjct: 179 SSPSEQAEVPSNTDSGIASAASSQQFLGQSTWSMTRGLIEDLPNVTNDYAQMQ-VLDEQN 237
Query: 614 AEDSTAESSSTSRRERD 630
STA+SSS R D
Sbjct: 238 ESHSTADSSSILRGRDD 254
>gi|444370664|ref|ZP_21170306.1| FAD binding domain of DNA photolyase, partial [Burkholderia
cenocepacia K56-2Valvano]
gi|443596999|gb|ELT65453.1| FAD binding domain of DNA photolyase, partial [Burkholderia
cenocepacia K56-2Valvano]
Length = 435
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 160/421 (38%), Positives = 222/421 (52%), Gaps = 12/421 (2%)
Query: 54 WWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDH 113
WWL SL+ LD++L G L+ R D+ + +V+ TGA +++N Y D
Sbjct: 1 WWLHGSLAGLDAALARHGGRLLLLRG-DAQREIERLVRDTGAAAVYWNRRYAQPQRDADA 59
Query: 114 RAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPK 173
K +L A+G+AV S N LL EPW+V G P+ F A+ + APL P
Sbjct: 60 ALKTSLKARGVAVESSNGSLLNEPWEVLTGSGGPYQVFTAY-WRAARRDRAVAAPLPAPG 118
Query: 174 RINSGDMSRCPSDTLVFEDESEKGSNAL-----LARAW-SPGWSNADKALTTFINGPLIE 227
+I + D + D +A L AW +P + A L F+ L
Sbjct: 119 QIVFHSWPKAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGAHAQLDAFLTTSLAG 178
Query: 228 YSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSI 287
Y+ R + D TS LSP L FG VS R+V+H V+ + D+ FL +
Sbjct: 179 YADARDRPDRPATSRLSPFLRFGNVSPRQVWHAVQGAASAGGAAYAADADK----FLSEL 234
Query: 288 GLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWAT 347
G RE+S + ++ P W D +AW++GRTGYPLVDAG+RELW T
Sbjct: 235 GWREFSYTLLYHFPTLATDNFRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELWTT 294
Query: 348 GWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFD 407
GW+H+R+R+VV+SF +K L + WR G +F DTL+DAD ++A WQ+++G D +
Sbjct: 295 GWMHNRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAPYF 354
Query: 408 RIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPI 467
RI NP +G KFDP+G YVRRW+PELA L IH PW A L+AAGI LG +YP P+
Sbjct: 355 RIFNPVAQGQKFDPDGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGIRLGIDYPAPL 414
Query: 468 V 468
V
Sbjct: 415 V 415
>gi|262277239|ref|ZP_06055032.1| deoxyribodipyrimidine photo-lyase [alpha proteobacterium HIMB114]
gi|262224342|gb|EEY74801.1| deoxyribodipyrimidine photo-lyase [alpha proteobacterium HIMB114]
Length = 470
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 148/466 (31%), Positives = 237/466 (50%), Gaps = 24/466 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
I W R D R+ DN AL+ + + VF +E+ + + +WWL +L D L
Sbjct: 6 IYWLRNDFRLNDNEALSYLLSSENNDFVFFSYDKEKYKFRSAQ--KWWLYKTLKIFDKKL 63
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+G + + + S L +++K T++ +N ++ P + ++ + L I +
Sbjct: 64 SEIGVKFIVENDLE-YSFLEKIIKNKKITEVCWNKIFSPEEIAIENNIIKLLEKNNIKYK 122
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFW---EKCLSMPFDPDAPLLPPKR-INSGDMSRC 183
F+++LL P PF F FW E + L+ K+ + + + S+
Sbjct: 123 IFSSNLLQNPDQCRKKDNTPFQVFTPFWKNAEMIYLKNYKYKKNLIKSKKSLKNNNQSKI 182
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
+T++ +K + W PG A K + +F + + Y KNR TS L
Sbjct: 183 --ETIL----PKKKWYEKFEKYWFPGEDIALKKIKSFNSEKINFYDKNRDFPSIEGTSKL 236
Query: 244 SPHLHFGEVSVRKVF-HLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
SPHL FGE+S +K++ +IK K G V FL IG RE++ ++ + P
Sbjct: 237 SPHLAFGEISPKKIYDECTKIK-------NKKIG---VTKFLNEIGWREFAYHLINHFPI 286
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
++ L + F W ++ + W++G TGYP+VDA M++L+ TGW+H+R+R+VV SF
Sbjct: 287 MLKKNLRKNFDKFPWSENKKFLDKWKKGNTGYPIVDAAMKQLYETGWMHNRLRMVVGSFL 346
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L++ W G KYF DTLLD D ++ GWQ+I+G D + RI NP +G KFDPN
Sbjct: 347 VKHLRINWTEGEKYFKDTLLDYDTANNVSGWQWIAGCGADAAPYFRIFNPITQGEKFDPN 406
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
GE+V+ W+P L ++P ++IH PW PE + L +Y PIV
Sbjct: 407 GEFVKYWIPNLKKVPKKFIHKPWELPEEQAKLINFNLIKDYFEPIV 452
>gi|56552346|ref|YP_163185.1| deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
ZM4]
gi|56543920|gb|AAV90074.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
ZM4]
Length = 469
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 156/490 (31%), Positives = 253/490 (51%), Gaps = 30/490 (6%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRA-GAVIAVFIWAPEEEGPYYPGRVSRWWLKHS 59
MS ++WFR D R+ DN A+ A +++ VI +I +E + WW+ S
Sbjct: 1 MSDTRPILIWFRHDFRLRDNAAITAAIQSRNPVICFYI---QESADAKTESAADWWVAES 57
Query: 60 LSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
L L+ L+ G L D+ + E+V+ + A +LF+N YD D K+++
Sbjct: 58 LLALNRQLKEKGGQLHLFEG-DAEKIIPEIVQQSHACKLFWNRRYDFKGKETDQILKKSI 116
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKR--INS 177
A G+ V+SF +LL EPW V + +GQPF F+A+W + + + A L P+ ++
Sbjct: 117 RAMGLEVQSFPNNLLNEPWTVKNDKGQPFRIFSAYW-RAVQRHMNIQAVLPCPENWVFST 175
Query: 178 GDMSRCP--SDTLVFEDESEKGSNAL-LARAWSPGWSNADKALTTFINGPLIEYSKNRRK 234
++ C D + E++ S + L ++ G + A K L +FI L Y+K R
Sbjct: 176 REIRHCLGYKDIAILAKETQDSSWKIKLKQSHRFGENEAHKQLKSFIENDLAHYAKERDF 235
Query: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSR 294
TS LS L G++S ++++H V N +G E + FL+ +G RE++
Sbjct: 236 PAKDGTSLLSAFLRSGQISSKQIWHEV---------TKNGSG-EGTSKFLEELGWREFAW 285
Query: 295 YMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
+ + HP ++ L W + W++G+TGYP +DAGMR LW TG++ +R+
Sbjct: 286 SVLWEHPDLNQHNLRPEFDKMPWKKASDNLQRWKEGQTGYPFIDAGMRALWQTGFMPNRL 345
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R+V +SF VK L + WR G K+F TL+D D +A WQ+++G+ + + RI NP
Sbjct: 346 RMVTASFLVKHLLIDWREGKKWFAQTLVDYDPACNATNWQWVAGSGIESAPYFRIMNPIL 405
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
+ KFDP+G+Y+R W+ ELA + T +IH PW A + +NYP PI+ + +
Sbjct: 406 QSQKFDPDGQYIREWVKELADVSTAFIHTPWKADKQ---------PANYPLPIIAHEEGR 456
Query: 475 CRLDEALSEM 484
R A E+
Sbjct: 457 NRALRAWKEI 466
>gi|343403457|dbj|BAK61538.1| cryptochrome1b [Glycine soja]
gi|343403460|dbj|BAK61540.1| cryptochrome1b [Glycine soja]
gi|343403463|dbj|BAK61542.1| cryptochrome1b [Glycine soja]
gi|343403466|dbj|BAK61544.1| cryptochrome1b [Glycine soja]
gi|343403469|dbj|BAK61546.1| cryptochrome1b [Glycine soja]
gi|343403472|dbj|BAK61548.1| cryptochrome1b [Glycine soja]
gi|343403475|dbj|BAK61550.1| cryptochrome1b [Glycine soja]
Length = 145
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/145 (82%), Positives = 130/145 (89%)
Query: 414 FEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAA 473
FEGYKFDPNGEYVRRWLPEL+RLPTEWIHHPWNAPESVLQAAGIELGSNYP PIV IDAA
Sbjct: 1 FEGYKFDPNGEYVRRWLPELSRLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAA 60
Query: 474 KCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEIPEPARNNLPT 533
K RL EALS+MWQQEAASRAA+ENGTEEGLGDSS+S P AFP D +MEE EP RNN
Sbjct: 61 KNRLLEALSKMWQQEAASRAAMENGTEEGLGDSSESVPAAFPQDTRMEETHEPVRNNPLP 120
Query: 534 TARRYEDQMVPSMTTSLVRVEEEES 558
ARRY+DQMVPS+T+SL+RVEEEE+
Sbjct: 121 IARRYQDQMVPSITSSLLRVEEEET 145
>gi|219847792|ref|YP_002462225.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
gi|219542051|gb|ACL23789.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aggregans DSM 9485]
Length = 479
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 166/479 (34%), Positives = 249/479 (51%), Gaps = 32/479 (6%)
Query: 8 IVWFRRDLRVEDNPAL--AAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
I WFRRDLR+ DN AL AA GAVI VFI+ G + +L SL+ LD
Sbjct: 3 IHWFRRDLRLRDNTALLAAADASGGAVIPVFIFDDAILGGRFASPARTQFLLDSLTALDG 62
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
LRSLG LV +R + +++L+ +++ +GA + +N Y P ++ RD K L A G
Sbjct: 63 ELRSLGLHLVLRRG-EPLTTLMALLRESGAHGVTWNRDYTPYAVQRDSTIKRELRAAGYR 121
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSMPFDPDAPLLPPKRINS-GDMS 181
S+ +++E +V A GQP+ + + W L P R+ +++
Sbjct: 122 AESYKDAVIFEMNEVVTAAGQPYTVYTPYAKRWRARLESE---------PVRVQGVPELT 172
Query: 182 RCP---SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
P SD L ++ + + R ++ G + A AL FI+ + Y+ R A
Sbjct: 173 AIPLPASDPLPALNDLLPTAPTSVPR-FATGETAARAALEHFIHNAIANYATARDLVAIA 231
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LSP+L FG +S R+ R + G ES ++ + RE+ + +
Sbjct: 232 GTSRLSPYLRFGVLSPRQCVVAARAAP-------SGPGPES---WIGELIWREFYIQVLY 281
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
+ P++ W D F AW+QGRTGYP+VDA MR+L GW+H+R R++V
Sbjct: 282 HFPHALRGSFKPVYDRIVWPNDPALFAAWQQGRTGYPIVDAAMRQLQQEGWMHNRARMIV 341
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF K L + WRWG ++F L+D D ++ GWQ+ +GT D + + RI NP +G K
Sbjct: 342 ASFLTKDLLIDWRWGERHFMHLLIDGDPAANNGGWQWAAGTGTDAQPYFRIFNPVSQGQK 401
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
FDP+G YVRR++PELA +PT +IH P P S AG+++G +Y P+V D A RL
Sbjct: 402 FDPDGAYVRRYVPELAGVPTRYIHEPHKMPPSEQVRAGVQIGRDYSAPVV--DHATQRL 458
>gi|260753965|ref|YP_003226858.1| deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|258553328|gb|ACV76274.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 469
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 156/490 (31%), Positives = 253/490 (51%), Gaps = 30/490 (6%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRA-GAVIAVFIWAPEEEGPYYPGRVSRWWLKHS 59
MS ++WFR D R+ DN A+ A +++ VI +I +E + WW+ S
Sbjct: 1 MSDTRPILIWFRHDFRLRDNAAITAAIQSRNPVICFYI---QESADAKTENAADWWVAES 57
Query: 60 LSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
L L+ L+ G L D+ + E+V+ + A +LF+N YD D K+++
Sbjct: 58 LLALNRQLKEKGGQLHLFEG-DAEKIIPEIVQQSHACKLFWNRRYDFKGKETDQILKKSI 116
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKR--INS 177
A G+ V+SF +LL EPW V + +GQPF F+A+W + + + A L P+ ++
Sbjct: 117 RAMGLEVQSFPNNLLNEPWTVKNDKGQPFRIFSAYW-RAVQRHMNIQAVLPCPENWVFST 175
Query: 178 GDMSRCP--SDTLVFEDESEKGSNAL-LARAWSPGWSNADKALTTFINGPLIEYSKNRRK 234
++ C D + E++ S + L ++ G + A + L +FI L Y+K R
Sbjct: 176 REIRHCLGYKDIAILAKETQDSSWKIKLKQSHRFGENEAHERLKSFIENDLAHYAKERDF 235
Query: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSR 294
TS LS L G++S ++++H V N +G E + FL +G RE++
Sbjct: 236 PAKDGTSLLSAFLRSGQISSKQIWHEV---------TKNGSG-EGTSKFLAELGWREFAW 285
Query: 295 YMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
+ + HP ++R L W + W++G+TGYP +DAGMR LW TG++ +R+
Sbjct: 286 SVLWEHPDLNQRNLRPEFDKMPWEKASDNLQRWKEGQTGYPFIDAGMRALWQTGFMPNRL 345
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R+V +SF VK L + WR G K+F TL+D D +A WQ+++G+ + + RI NP
Sbjct: 346 RMVTASFLVKHLLIDWREGEKWFAQTLVDYDPACNATNWQWVAGSGIESAPYFRIMNPIL 405
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
+ KFDP+G+Y+R W+ ELA + T +IH PW A + +NYP PI+ + +
Sbjct: 406 QSQKFDPDGQYIREWVKELADVSTAFIHTPWKADKQ---------PANYPLPIIAHEEGR 456
Query: 475 CRLDEALSEM 484
R A E+
Sbjct: 457 DRALRAWKEI 466
>gi|320160751|ref|YP_004173975.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
gi|319994604|dbj|BAJ63375.1| deoxyribodipyrimidine photolyase [Anaerolinea thermophila UNI-1]
Length = 466
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 155/473 (32%), Positives = 249/473 (52%), Gaps = 25/473 (5%)
Query: 10 WFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRS 69
W RRDLR+ D+PAL ++ G VI VFI ++ + +L L LD LR
Sbjct: 7 WIRRDLRLHDHPALEYALQKGRVIPVFIL--DDRLLQKEASKRKQFLFSGLRQLDEDLRK 64
Query: 70 LGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRD-HRAKEALTAQGIAVRS 128
G+ L+ +R + ++ L +++ TGA ++ Y P + RD H A+E + +
Sbjct: 65 RGSQLIIRRG-EPLAELTRLIQETGAEEIVALEDYSPYARRRDSHIARE------LPLHL 117
Query: 129 FNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTL 188
F + +Y P V G P+ F F ++PF + + P+R + P D L
Sbjct: 118 FAGETVYPPSLVLKPDGSPYTVFTPFSRAWKALPFASPSVVSLPERFPA-----VP-DKL 171
Query: 189 VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLH 248
V S A+ + + PG A + L F++GP EY+ R + D TSFLSP+
Sbjct: 172 V----SLPIPEAIFLQDFPPGELEALRRLENFLSGPAREYADGRNRLDQPGTSFLSPYFR 227
Query: 249 FGEVSVR-KVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERP 307
FG +S R VF + ++ Q++ ++ K G E+ +L + RE+ + +++P+
Sbjct: 228 FGMLSPRWAVFQVRKMIQIT-SSPDEKRGYEA---WLNELIWREFYISILYHYPHVLAMA 283
Query: 308 LLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 367
L+ W +AW++G+TGYP+VDA MR+L ATGW+H+R R++V+SF K L
Sbjct: 284 FNPALRAIEWRDAPSELQAWKEGKTGYPVVDAAMRQLKATGWMHNRARMIVASFLTKDLL 343
Query: 368 LPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVR 427
+ W+ G ++F L+D D ++ GWQ+ +G D + RI NP + KFDP G Y++
Sbjct: 344 INWQEGEQWFMQNLVDGDPAANNGGWQWTAGVGTDAAPYFRIFNPVLQSAKFDPQGRYIK 403
Query: 428 RWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
W+PEL +PTE+IH PW P S+ + G+ +G +YP P+V + R+ EA
Sbjct: 404 TWVPELTSVPTEFIHAPWTMPLSLQISLGVRIGRDYPTPMVDHQEVRGRVLEA 456
>gi|385653609|ref|ZP_10048162.1| deoxyribodipyrimidine photo-lyase [Leucobacter chromiiresistens JG
31]
Length = 465
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 154/438 (35%), Positives = 222/438 (50%), Gaps = 18/438 (4%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLS 61
G +++WFR DLR+ D+ AL+AG R G V+A+++ E + G ++WWL SL+
Sbjct: 15 GLMTALIWFRDDLRLADHAALSAGARDEGGVVALYVLDEESDETRPLGGAAKWWLHESLT 74
Query: 62 HLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTA 121
L +L G LV +R + S + V GA +++N Y + D R KE L
Sbjct: 75 RLGEALHERGVPLVLRRGA-AESVVPAVAAEVGADHVYWNRRYGAERHI-DARIKERLHG 132
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMS 181
G+ SF LL+EPW V G + ++ FW CL+MP P PL P+ + + S
Sbjct: 133 DGVDAHSFPGGLLFEPWTVETQSGGHYRVYSPFWRACLAMP-GPAEPLPIPEPLRGAEPS 191
Query: 182 RCPSDTLVFEDESEKGSNAL-LARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
+ +S+ A +A W PG A L F++ Y+ R
Sbjct: 192 AASDALDDWRLQSKHPDWATGIAERWQPGEDQALARLERFLSSRAGAYAGRRDFPSEEVC 251
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP+L +GE+S R V+H G AG FL +G RE++ + +F++
Sbjct: 252 SELSPYLRWGEISPRTVWHRALAS-------GADAG-----AFLSELGWREFAWHTTFHN 299
Query: 301 PYSHERPLLGHLKFFSWV-VDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
H R L F W DE +AW++G TGY LVDAGMRELW TG++H+R+R+V +
Sbjct: 300 SPLHLRELNPQFAHFPWKDPDEQQLRAWQRGETGYGLVDAGMRELWQTGYMHNRVRMVTA 359
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF K L WR G +FWDTL+DAD S+ WQ+++G D + RI NP + KF
Sbjct: 360 SFLTKNLLTDWRIGEAWFWDTLVDADTASNPFNWQWVAGCGADAAPYFRIFNPVTQQKKF 419
Query: 420 DPNGEYVRRWLPELARLP 437
DP+G YV W + P
Sbjct: 420 DPDGHYVSLWASDSVLFP 437
>gi|432863497|ref|XP_004070096.1| PREDICTED: cryptochrome-2-like [Oryzias latipes]
Length = 806
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 158/470 (33%), Positives = 235/470 (50%), Gaps = 56/470 (11%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEE-GP---YYPGRVSRWWLKHSLSH 62
++WFRRDLR+ DNPAL A + A VI +FIW+PEEE GP G S++WL +L+
Sbjct: 223 LLWFRRDLRLCDNPALNAALEMDAPVIPIFIWSPEEEEGPGVTVAAGGASKYWLHQALAC 282
Query: 63 LDSSLRSLGTSLVTKRSTD----SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEA 118
+ +SL +G+ L ++ S+ +L ++VK TGA L N LY+P RD +
Sbjct: 283 ICTSLNHIGSRLTFLKADGEEKCSLPTLKQLVKETGAKTLLANALYEPWLKERDDMVEST 342
Query: 119 LTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSG 178
L +G+ R F + L +P+ V + G P
Sbjct: 343 LQKEGVQCRIFPSYCLRDPYSV--STGVPLEALG-------------------------- 374
Query: 179 DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
++R P +D + A + ++W A L F+ + Y K +AD+
Sbjct: 375 -LARMPRR----KDGTTIDWAANIRKSWDFSEDGAHARLDNFLRDGVYRYEKESGRADAP 429
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LSP+LHFG++S R + W +G + L L + +
Sbjct: 430 NTSSLSPYLHFGQLSPRWLL---------WDAKGARCRSPKFQRKLAWRDLAYWQLTLFP 480
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
+ P+ RP K W D + KAW++G+TGYPLVDA MR+LW TGW+++ +R VV
Sbjct: 481 DLPWESIRP---PYKALRWNTDRSHLKAWQRGKTGYPLVDAAMRQLWLTGWMNNYMRHVV 537
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF + L LPW+ G ++F DTL+DAD+ DA+ WQ +G + ++ + +P
Sbjct: 538 ASFLIAYLHLPWQEGYRWFQDTLVDADVAIDAMMWQ--NGGMCGLDHWNFVMHPVDAALT 595
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
DP G YVR+W PELA LP E IH PW P S+L+ A + G +P IV
Sbjct: 596 CDPYGHYVRKWCPELADLPDELIHKPWKCPASMLRRAKVVFGETFPERIV 645
>gi|398817002|ref|ZP_10575637.1| deoxyribodipyrimidine photolyase [Brevibacillus sp. BC25]
gi|398031514|gb|EJL24900.1| deoxyribodipyrimidine photolyase [Brevibacillus sp. BC25]
Length = 484
Score = 244 bits (624), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 163/492 (33%), Positives = 254/492 (51%), Gaps = 17/492 (3%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFRRDLR+ D+ AL A + AG +I V+I G + +++ L
Sbjct: 3 AIVWFRRDLRLHDHAALHAAMLAGDPIIPVYIVEDSLCRSAAVGDKRLYAHFAAIAALGD 62
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L LG L+ R + L ++ + TGA +L FN Y P + RD E L++QG+
Sbjct: 63 ALAQLGGRLLI-RHGNPQQVLCQLAQETGADKLLFNRDYAPEARKRDELVSEVLSSQGVV 121
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
V + +L+EP ++ Q P+A F + ++P D P P R N D + +
Sbjct: 122 VHTCKDLILHEPGEIMTKQRTPYAVFTPYRRVWQTLP--KDRPFPQPTRWNLFDRLKELA 179
Query: 186 DTLVFEDESEKGSNALLARAWSP---GWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
V E+ G + W G A K L F+NG + Y + R TS
Sbjct: 180 SEPVPTVEA-FGRKRPIGTEWEMEQFGERAAQKRLQQFLNGDIYTYKEKRDMPGVNATSR 238
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LS L+ G +S+R V+H +++V G + S+ FL + RE+ + + + HP+
Sbjct: 239 LSFALNTGTLSIRTVYH--SVQEVLARARGEQV--TSIEAFLTELIWREFYQQVLYFHPH 294
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ + L + +W + F W G TGYP+VDA M++L TGW+H+R+R++ +SF
Sbjct: 295 TTDHAYLPQFETVAWENRKDLFTRWCHGETGYPIVDAAMKQLNETGWMHNRLRMITASFL 354
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
K L + WRWGM YF L+D D ++ GWQ+ + T D + + RI NP +G KFDP+
Sbjct: 355 TKDLLVDWRWGMAYFAQQLVDFDEAANIGGWQWSASTGTDAQPYFRIFNPVTQGEKFDPD 414
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
G +V+++LP L +P ++IH PW+ PE + + AG ++G +YP P V D A+ R L+
Sbjct: 415 GAFVKKYLPVLREVPLQYIHKPWDMPEQIQEQAGCKIGFDYPIPCV--DHAQRR---KLA 469
Query: 483 EMWQQEAASRAA 494
QEA R A
Sbjct: 470 MALFQEAKDRHA 481
>gi|384412560|ref|YP_005621925.1| deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|335932934|gb|AEH63474.1| Deoxyribodipyrimidine photo-lyase [Zymomonas mobilis subsp. mobilis
ATCC 10988]
Length = 467
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 156/489 (31%), Positives = 251/489 (51%), Gaps = 30/489 (6%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRA-GAVIAVFIWAPEEEGPYYPGRVSRWWLKHS 59
MS ++WFR D R+ DN A+ A +++ VI +I +E + WW+ S
Sbjct: 1 MSDTRPILIWFRHDFRLRDNAAVTAAIQSRNPVICFYI---QESADAKTESAADWWVAES 57
Query: 60 LSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
L L+ L+ G L D+ + E+V+ + A +LF+N YD D K+++
Sbjct: 58 LLALNRQLKEKGGQLHLFEG-DAEKIIPEIVQQSHACKLFWNRRYDFKGKETDQILKKSI 116
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKR--INS 177
A G+ V+SF +LL EPW V + +GQPF F+A+W + + + A L P+ ++
Sbjct: 117 RAMGLEVQSFPNNLLNEPWTVKNDKGQPFRIFSAYW-RAVQRYMNIQAVLPCPENWVFST 175
Query: 178 GDMSRCP--SDTLVFEDESEKGSNAL-LARAWSPGWSNADKALTTFINGPLIEYSKNRRK 234
++ C D + E++ S + L ++ G + A K L +FI L Y+K R
Sbjct: 176 REIRHCLGYKDIAILAKETQDSSWKIKLKQSHRFGENEAHKQLKSFIENDLAHYAKERDF 235
Query: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSR 294
TS LS L G++S ++++H V N +G E + FL +G RE++
Sbjct: 236 PAKDGTSLLSAFLRSGQISSKQIWHEV---------TKNGSG-EGTSKFLAELGWREFAW 285
Query: 295 YMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
+ + HP ++ L W + W++G+TGYP +DAGMR LW TG++ +R+
Sbjct: 286 SVLWEHPDLNQHNLRPEFDKMPWKKASDNLQRWKEGQTGYPFIDAGMRALWQTGFMPNRL 345
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R+V +SF VK L + WR G K+F TL+D D +A WQ+++G+ + + RI NP
Sbjct: 346 RMVTASFLVKHLLIDWREGEKWFAQTLVDYDPACNATNWQWVAGSGIESAPYFRIMNPIL 405
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
+ KFDP+G+Y+R W+ ELA + T +IH PW A + +NYP PI+ + +
Sbjct: 406 QSQKFDPDGQYIREWVKELADVSTAFIHTPWKADKQ---------PANYPLPIIAHEEGR 456
Query: 475 CRLDEALSE 483
R A E
Sbjct: 457 DRALRAWKE 465
>gi|402823473|ref|ZP_10872896.1| deoxyribodipyrimidine photo-lyase [Sphingomonas sp. LH128]
gi|402262964|gb|EJU12904.1| deoxyribodipyrimidine photo-lyase [Sphingomonas sp. LH128]
Length = 455
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 164/442 (37%), Positives = 225/442 (50%), Gaps = 30/442 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IVW RRDLR+ D PA+A R G VI V+I E G SRWWL HSL L ++L
Sbjct: 6 IVWLRRDLRLSDQPAIAEAARKGPVIPVYILDDETPRHRAMGGASRWWLHHSLESLGAAL 65
Query: 68 RSLGTSLVTKRS-TDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
+ G+ L+ +R +D V L ++ + TGA ++ H Y+P R E + + +
Sbjct: 66 QEKGSRLILRRGRSDEV--LAKLAEETGAQEVHALHHYEPWW-----RNAEKAVGKVLTL 118
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP-S 185
+ + L P V G + + FW + L P P P+ I S+ P S
Sbjct: 119 CLHHGNYLAPPGSVTTGSGGLYKIYTPFW-RALRERMPPHDPQRRPQTIAV--PSKWPES 175
Query: 186 DTL---VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
DTL + + + A W PG A K L F+ Y R TS
Sbjct: 176 DTLPDWKLLPTTPDWAGGMRA-MWEPGEKGARKRLHAFVE-EASAYEGQRNLPGVEGTSM 233
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHLHFGE+S +V+H V A+ G SV FL IG R+Y++ + +P
Sbjct: 234 LSPHLHFGEISPAQVWHAV-------ADAGG-----SVATFLGEIGWRDYAQNVILQYPD 281
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
R F W +AW+QGRTGYP+VDAGMR+LW TGW+H+R+R++ +SF
Sbjct: 282 YGGRYARDPFGAFPWRTSTRDLEAWQQGRTGYPIVDAGMRQLWHTGWMHNRVRMIAASFL 341
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L + WR G ++FWDTL+DAD S+A+ WQ+ +G+ D F RI P + KFD
Sbjct: 342 VKHLLIDWRAGEQWFWDTLVDADYGSNAVNWQWTAGSGVDANMFVRIMAPLTQSEKFDAA 401
Query: 423 GEYVRRWLPELARLPTEWIHHP 444
G Y+R W+PELA L IH P
Sbjct: 402 G-YIREWVPELADLSDADIHDP 422
>gi|410694724|ref|YP_003625346.1| putative Deoxyribodipyrimidine photo-lyase PhrB [Thiomonas sp. 3As]
gi|294341149|emb|CAZ89550.1| putative Deoxyribodipyrimidine photo-lyase PhrB [Thiomonas sp. 3As]
Length = 497
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 163/482 (33%), Positives = 259/482 (53%), Gaps = 31/482 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAV-FIWAPE------EEGPYYPGRVSRWWLKHSL 60
+VW RRDLR+ DN AL A +RA +A+ F++ + + G RV ++ ++
Sbjct: 21 LVWLRRDLRLHDNAALHAALRACDKVALAFVFDRDILDPLLQRGLQADRRVE--FILAAV 78
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+ +D++LR G +L+ + ++ + ++ + GA +F +P +L RD + AL
Sbjct: 79 AEIDAALREHGAALIVRHAS-AREAIPALAAELGAQTVFCGRDDEPEALARDAAVERALR 137
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDP-DAPLLPPKRI 175
G A+R+ +++E +V AQG+P++ F A+ + + P P D+ + +
Sbjct: 138 QDGRALRTVKEHMIFERDEVLTAQGKPYSVFTPYRTAWLARYAAQPQQPVDSAVTSARLA 197
Query: 176 NSGDMSRCPSDTLVFEDESEKG--SNALLARAWSPGWSNADKALTTFINGPLIEYSKNRR 233
R P TL SE G + L A G S A AL + + +Y + R
Sbjct: 198 ALPAALRQPLPTL-----SELGFAPSNLHALKLPLGASGA-AALVDDFSRRIDDYDQARD 251
Query: 234 KADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYS 293
S+LS HL FG VSVR++ + +WA + +AG E ++L + R++
Sbjct: 252 YPARKGPSYLSVHLRFGTVSVRELVAM------AWARQ--QAGSEGARVWLSELVWRDFY 303
Query: 294 RYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDR 353
+ F+HP+ W D F AW +GRTGYPLVDA MR++ TG++H+R
Sbjct: 304 FQILFHHPHVVNAAFKPVYDRIQWRNDPAQFAAWCEGRTGYPLVDAAMRQINQTGYMHNR 363
Query: 354 IRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQ 413
+R+VV+SF K L + WRWG +YF D L D DL ++ GWQ+ + + D + + RI NP
Sbjct: 364 LRMVVASFLTKDLGIDWRWGERYFADHLNDFDLAANNGGWQWAASSGCDAQPYFRIFNPV 423
Query: 414 FEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAA 473
+ KFD G+++RR++PELA+ ++ IH PW AP ++LQAAG+ LGS YP PIVR D A
Sbjct: 424 AQSEKFDAGGDFIRRYVPELAQFASKDIHAPWKAPAALLQAAGVRLGSTYPVPIVRHDLA 483
Query: 474 KC 475
+
Sbjct: 484 RA 485
>gi|433458983|ref|ZP_20416854.1| deoxyribodipyrimidine photolyase [Arthrobacter crystallopoietes
BAB-32]
gi|432192475|gb|ELK49337.1| deoxyribodipyrimidine photolyase [Arthrobacter crystallopoietes
BAB-32]
Length = 475
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 156/447 (34%), Positives = 220/447 (49%), Gaps = 28/447 (6%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S+VWFR DLR+ DNPAL A A A++ E EG G +RWWL H+L L S
Sbjct: 3 TSLVWFRDDLRIRDNPALLAATADSAAAALYTLDEESEGIRPLGAAARWWLHHALEDLRS 62
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L LG L+ +R + L EV G +++N Y D K+ GI
Sbjct: 63 ELDRLGIPLLLRRGP-AAEVLTEVAAELGVAAVYWNRRYGGAERQVDAEMKQRAAEAGIH 121
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM---SR 182
SF A LL+EPW ++ QG P+ F F + + P P + G +
Sbjct: 122 AESFQASLLHEPWRISTGQGTPYKVFTPFRKALSELGLRPPLGAPEPGQRFGGPLPHSDE 181
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
S LV + G L AW+PG + + L F++G L +Y + R + TS
Sbjct: 182 LDSWQLVPQRPDWAGG---LRDAWTPGEAAGHELLEDFVDGALADYEQGRDRPAVQGTSR 238
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSP+L +G VS +V V ++ + G +V +L +G RE+ + ++HP
Sbjct: 239 LSPYLRWGHVSPFQVRAAVLAREA-------ERGSSAVRAYLGELGWREFCWHQLYHHPL 291
Query: 303 SHERPLLGHLKFFSW--------------VVDEGYFKAWRQGRTGYPLVDAGMRELWATG 348
++ L F W AW++GRTG PLVDAG RELWATG
Sbjct: 292 LAKQNLRPEFDAFPWQRPGSGGGDGNDGGASPSVRLLAWQRGRTGVPLVDAGQRELWATG 351
Query: 349 WLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDR 408
W+H+R+R+V +SF VK L + WR G +FWDTL+DAD ++ WQ+++G+ D F R
Sbjct: 352 WMHNRVRMVSASFLVKNLGIDWRLGEHWFWDTLVDADPATNPASWQWVAGSGADAAPFFR 411
Query: 409 IDNPQFEGYKFDPNGEYVRRWLPELAR 435
I NP + KFDP G YV RW+PE +
Sbjct: 412 IFNPLSQQAKFDPEGRYVARWVPEYGQ 438
>gi|195995819|ref|XP_002107778.1| hypothetical protein TRIADDRAFT_19715 [Trichoplax adhaerens]
gi|190588554|gb|EDV28576.1| hypothetical protein TRIADDRAFT_19715, partial [Trichoplax
adhaerens]
Length = 384
Score = 243 bits (619), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 133/382 (34%), Positives = 210/382 (54%), Gaps = 7/382 (1%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
C++VW RRDLR+ DNPAL + G +I V+I+ + G G+ WWL HSL L +
Sbjct: 7 CTLVWLRRDLRLIDNPALFHAAKRGQLITVYIFDEDCSGRRKTGQACLWWLYHSLKSLHN 66
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L L+ K D+ + L E++ + A +++N Y+P RD +E L + +
Sbjct: 67 QLSQWNIPLIMKSGNDAFTILKELLDSYNADTIYWNRCYEPFEYNRDCSIEEKLKMENVT 126
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRIN-SGDMSRCP 184
V ++ +L+EPW + A+G P + FW +CLS+P P P PK N +G S+C
Sbjct: 127 VETYQDRVLFEPWTIKTAKGGPVQIYIHFWNQCLSLP-QPRKPYDKPKFKNQTGCQSKC- 184
Query: 185 SDTLVFEDESEKGSN--ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+ V++ ++ + L W PG A L +FI L Y++ + TTS
Sbjct: 185 DEPAVWQRLAKLSQDMPMKLQDFWHPGEEQAISKLKSFIKNSLNAYAEKSQCLRLNTTSN 244
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSP+LHFGE+S V+H VR S + E ES+ +L+S+G REY+ ++ F++P
Sbjct: 245 LSPYLHFGEISPFTVWHSVR--HASSSAEPPAVKSESLKQYLRSLGWREYTCHLLFHYPD 302
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
++ + VD ++W+QG TGYP+VDAGMR+L G + +R+R++V+SF
Sbjct: 303 LPQKCFRSSFEQLKLQVDPVKLQSWQQGNTGYPVVDAGMRQLSVAGIMPNRLRMIVASFL 362
Query: 363 VKVLQLPWRWGMKYFWDTLLDA 384
+K L +PW+ G ++FW L+DA
Sbjct: 363 IKHLLVPWQKGEEWFWSKLIDA 384
>gi|399064694|ref|ZP_10747561.1| deoxyribodipyrimidine photolyase [Novosphingobium sp. AP12]
gi|398030435|gb|EJL23848.1| deoxyribodipyrimidine photolyase [Novosphingobium sp. AP12]
Length = 455
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 162/451 (35%), Positives = 222/451 (49%), Gaps = 48/451 (10%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IVW RRDLR+ D PA+A R G VI V+I E G SRWWL HSLS LD++L
Sbjct: 6 IVWLRRDLRLSDQPAIAEAARKGPVIPVYICDDETPRHRAMGGASRWWLHHSLSSLDAAL 65
Query: 68 RSLGTSLVTKRS-TDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
R G+ L+ +R +D V L ++ + GAT++ H Y+P R E A+ + +
Sbjct: 66 RDQGSRLILRRGRSDEV--LAKLAEEVGATEVDALHHYEPW-----WRNAEKAVAKHLTL 118
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKC-------------LSMPFDPDAPLLPPK 173
+ + L P V G + + FW S+P AP PK
Sbjct: 119 CLHHGNYLAPPGSVTTGSGGLYKIYTPFWRALRERMPPPEPQRRPQSIP----APTKWPK 174
Query: 174 RINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRR 233
D PS + L W PG A K L F+ Y R
Sbjct: 175 SDRLEDWGLLPS---------KPDWAGGLRGMWEPGEGGARKRLHAFVE-EASAYEAQRN 224
Query: 234 KADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYS 293
TS LSPHLHFGEVS +V+H V A+ G SV FL +G R+Y+
Sbjct: 225 LPGVDGTSMLSPHLHFGEVSPSQVWHAV-------ADAGG-----SVGTFLSEVGWRDYA 272
Query: 294 RYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDR 353
+ + P + F W + +AW+ GRTGYP+VDAGMR+LW TGW+H+R
Sbjct: 273 QNVILQFPDYGSKYARDPFGDFPWRTSKADLEAWQLGRTGYPVVDAGMRQLWHTGWMHNR 332
Query: 354 IRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQ 413
+R++ +SF +K L + WR G K+FWDTL+DAD ++++ WQ+ +G+ D + F RI P
Sbjct: 333 VRMIAASFLIKHLLIDWREGEKWFWDTLVDADYGNNSVNWQWTAGSGIDAQMFVRIMAPL 392
Query: 414 FEGYKFDPNGEYVRRWLPELARLPTEWIHHP 444
+ KFD Y+R W+PELA L E IH P
Sbjct: 393 TQSEKFD-AASYIREWVPELADLSDEDIHDP 422
>gi|308178900|ref|YP_003918306.1| deoxyribodipyrimidine photo-lyase [Arthrobacter arilaitensis Re117]
gi|307746363|emb|CBT77335.1| deoxyribodipyrimidine photo-lyase [Arthrobacter arilaitensis Re117]
Length = 464
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 148/441 (33%), Positives = 232/441 (52%), Gaps = 21/441 (4%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++WFR DLR DNPAL++ + AG VIAVFI + G G ++WWL H L L +
Sbjct: 8 LQLMWFRDDLRTADNPALSSALAAGPVIAVFILDQQSPGIRPLGGAAKWWLHHGLKSLRA 67
Query: 66 SLRSLGTSLVTKRS-TDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+L LG LV ++ DS+ + E+ + T A + +N Y D RAK AL G
Sbjct: 68 ALEDLGIPLVLRKGPADSI--MTELARQTNAQAVHWNRRYGQPERAVDTRAKTALRGLGR 125
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
RS+ LL+EPW++ +G + F F+ P PL P ++ + P
Sbjct: 126 EARSYPGTLLHEPWELLTKKGTGYKVFTPFYNALGDSAIRP--PLPAPLGQDTFSAAGIP 183
Query: 185 SDTLVFEDESEKGS---NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
+ + + E + A LA W PG + A L + +Y ++ + D TS
Sbjct: 184 NGLELEDLELLPATAQWTAGLAAQWEPGEAPARHRLENVLESIAQDYPEHHDRPDLDGTS 243
Query: 242 FLSPHLHFGEVSVRKVFH-LVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
LSP L +G + +++ L R+ A E KAG + + + + R++ ++ ++H
Sbjct: 244 ALSPALRWGHLGAHEMWDALGRL-----AAENPKAGAGATAM-RRQLAWRDFCWHLYYHH 297
Query: 301 PYSHERPLLGHLKFFSWVVDE------GYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
P +R L F WV E Y + W++GRTG+ LVDAGM++LW TGW+H+R+
Sbjct: 298 PQLPDRNLRTDFDHFDWVWPEQDQQVASYVQLWQKGRTGFGLVDAGMQQLWQTGWMHNRV 357
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R+V +S VK LQ+ W+ G ++FWDTL+DAD+ S+ WQ+++G+ D + R+ NP+
Sbjct: 358 RMVAASLLVKNLQVHWKVGERWFWDTLVDADIASNTANWQWVAGSGADAAPYFRVFNPEL 417
Query: 415 EGYKFDPNGEYVRRWLPELAR 435
+ KFDP G YV ++ P A+
Sbjct: 418 QAKKFDPQGSYVSQFAPLAAQ 438
>gi|296136973|ref|YP_003644215.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
gi|295797095|gb|ADG31885.1| DNA photolyase FAD-binding protein [Thiomonas intermedia K12]
Length = 497
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 167/484 (34%), Positives = 259/484 (53%), Gaps = 35/484 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAV-FIWAPE------EEGPYYPGRVSRWWLKHSL 60
+VW RRDLR+ DN AL A +RA +A+ F++ + + G RV ++ ++
Sbjct: 21 LVWLRRDLRLHDNAALHAALRACDKVALAFVFDRDILDPLLQRGLQADRRVE--FILAAV 78
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKA-TGATQLFFNHLYDPLSLVRDHRAKEAL 119
+ +D++LR G +L+ + + S + V+ A GA +F +P +L RD + AL
Sbjct: 79 AEIDAALRERGAALIVRHA--SAREAIPVLAAELGAQAVFCGRDDEPAALARDAAVERAL 136
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDP-DAPLLPPKR 174
G A+ S +++E +V AQ +P++ F A+ + + P P D+ + +
Sbjct: 137 RQDGRALHSVKEHMIFERDEVLTAQDKPYSVFTPYRTAWLARYAAQPQQPVDSAVTSARL 196
Query: 175 INSGDMSRCPSDTLVFEDESEKG---SNALLARAWSPGWSNADKALTTFINGPLIEYSKN 231
+ P TL SE G SN L A G S A AL + + +Y +
Sbjct: 197 AALPAALQQPLPTL-----SELGFAPSN-LHALKLPLGASGA-SALVDDFSRRIDDYDQA 249
Query: 232 RRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLRE 291
R S+LS HL FG VSVR++ + +WA + +AG E ++L + R+
Sbjct: 250 RDYPARKGPSYLSVHLRFGTVSVRELVAM------AWARQ--QAGSEGARVWLSELVWRD 301
Query: 292 YSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLH 351
+ + F+HP+ W D F AW +GRTGYPLVDA MR++ TG++H
Sbjct: 302 FYFQILFHHPHVVNAAFKPVYDRIQWRNDPAQFAAWCEGRTGYPLVDAAMRQINQTGYMH 361
Query: 352 DRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDN 411
+R+R+VV+SF K L + WRWG +YF D L D DL ++ GWQ+ + + D + + RI N
Sbjct: 362 NRLRMVVASFLTKDLGIDWRWGERYFADHLNDFDLAANNGGWQWAASSGCDAQPYFRIFN 421
Query: 412 PQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRID 471
P + KFD G+++RR++PELA+L ++ IH PW AP ++LQAAG+ LGS YP PIVR D
Sbjct: 422 PVAQSEKFDAGGDFIRRYVPELAQLASKDIHAPWKAPAALLQAAGVRLGSTYPAPIVRHD 481
Query: 472 AAKC 475
A+
Sbjct: 482 LARA 485
>gi|206603959|gb|EDZ40439.1| Deoxyribodipyrimidine photolyase [Leptospirillum sp. Group II
'5-way CG']
Length = 534
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 165/476 (34%), Positives = 237/476 (49%), Gaps = 15/476 (3%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
SIVWFR +LR+ DNP L G ++ VF+ E G P +WW SL LD
Sbjct: 61 SSIVWFRNNLRLLDNPPLREAAERGPLLPVFV--GEHPGKQPPEGARQWWQARSLRRLDH 118
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SL G L+ R D + L ++ A ++ DP R + AL+ + +
Sbjct: 119 SLSRRGAPLLFLRG-DPATLLPDLATRLKADKILAMEAIDPDGRRTQSRLQGALSGKPVE 177
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
+ F AD L P D+ + P+ F FW++ S P P R++ R +
Sbjct: 178 LHLFPADYLISPADLPAGRRSPWKVFTPFWQRAQSHLPPPLPLPAP-DRLDGIPFPRTET 236
Query: 186 -DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
D +E E+ + + W PG A + L F+ L Y R + T+S LS
Sbjct: 237 PDDWGWEPENPDWATEMRG-FWDPGEEGAWRRLHAFLEKRLENYRVRRDFLEEDTSSLLS 295
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
PHL GE+S+R V+ WA + + A D+ FL +G RE+S ++ ++HP
Sbjct: 296 PHLANGEISIRSVW---------WAIKESTAPDKDREKFLSELGWREFSAHLMWHHPDLA 346
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
L W D AW++GRTG PLVDAGMR+L G+L +R+R+V +SF VK
Sbjct: 347 SERLHKERPEIRWREDPFSLLAWQKGRTGIPLVDAGMRQLRRLGFLPNRVRMVAASFLVK 406
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L + WR G ++F D L+D D ++A WQ+ISG D + RI NP +G KFDP G
Sbjct: 407 NLLIDWRKGREWFADNLVDHDPANNAASWQWISGYGADAAPWFRIFNPVLQGEKFDPEGR 466
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
YV+ +LPEL L +IH PW AP ++L +AGI S Y PIV + ++ R +A
Sbjct: 467 YVKTYLPELHGLSPRYIHCPWTAPAALLDSAGIGEQSPYRNPIVDLGLSRKRALQA 522
>gi|251772673|gb|EES53237.1| Deoxyribodipyrimidine photo-lyase [Leptospirillum
ferrodiazotrophum]
Length = 468
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 167/478 (34%), Positives = 238/478 (49%), Gaps = 37/478 (7%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
SIVWFR +LR+ DN L+ + GAV+ V++ P +P RV + W K SL LD S
Sbjct: 3 SIVWFRHNLRLSDNRPLSLAAKEGAVLPVYVHDPTLS--LFPDRVRQRWRKRSLWELDRS 60
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
LR LG L S S LL+V A +++ + R + L G+++
Sbjct: 61 LRKLGNRLHVF-SGSSCEILLKVATRVRAERVYAFRGLTGEDRALEERLENELRKAGVSL 119
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS- 185
D LY P + + P+ F + C F P+ PL P R++S PS
Sbjct: 120 HLTGFDTLYPPDLAAEGRSSPWKIFTPYHRFC-RQSFLPEHPLPAPSRVDS-----LPSL 173
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
+L E+E + + PG + A L F+ L Y+ R TS LSP
Sbjct: 174 ASLGGEEEVGGAGEVVSFVGFEPGEAGAMHCLREFLENSLAGYASRRDYPAEEGTSRLSP 233
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
HL GE+SVR++ V E + G + FL+ +G RE+S ++ F HP
Sbjct: 234 HLASGEISVREI--------VQRLQESDAPGKDREK-FLEELGWREFSAHLLFFHPEMLV 284
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGM-RELWATGWLHDRIRVVVSSFFVK 364
PL W DE F AW++GRTG+PLVDAGM REL TGW+H+R+R+V +SF VK
Sbjct: 285 DPLKKEWATMEWTSDEAGFLAWKEGRTGFPLVDAGMMRELAETGWMHNRVRMVAASFLVK 344
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L + W+ G ++F + LLD D ++A WQ+++G D + RI NP +G ++DP+G+
Sbjct: 345 NLGVSWQSGSRWFAERLLDYDPANNAASWQWVAGCGIDAAPYFRIFNPVLQGQRYDPHGK 404
Query: 425 YVRRWLPELARLPTEWIHHP--------WNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
YVRR+LPEL+ LP E IH P W P S YP PIV + ++
Sbjct: 405 YVRRFLPELSALPDEKIHLPRKQSSSADWERPAS---------SQGYPEPIVDLSESR 453
>gi|110679555|ref|YP_682562.1| deoxyribodipyrimidine photolyase [Roseobacter denitrificans OCh
114]
gi|109455671|gb|ABG31876.1| deoxyribodipyrimidine photolyase, putative [Roseobacter
denitrificans OCh 114]
Length = 472
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 172/484 (35%), Positives = 258/484 (53%), Gaps = 35/484 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFRRDLR+ D+PAL A V++G VI VFI + E G RW L + HL +
Sbjct: 7 LVWFRRDLRLSDHPALDAAVKSGNPVIPVFIHDDQVE---TLGAAPRWRLGLGIGHLSET 63
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L L + L+ +R ++ +L ++ TGA +F++ LYDP ++ RD K AL GI
Sbjct: 64 LEGLNSRLILRRGP-ALETLRTLILETGAGAVFWSRLYDPAAVERDTEVKAALKQDGIDA 122
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
RSF L++EPW V G + + FW + D DAPL P RI++ + SD
Sbjct: 123 RSFGGHLMFEPWTVETKTGGFYKVYTPFWNMVKNR--DVDAPLSAPSRIDA-PAAWPGSD 179
Query: 187 TLV---FEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
TL ++G+ A++A G + A L TFI+ + Y R + TS L
Sbjct: 180 TLSDWNMGAAMDRGA-AVVAPYVRLGEAAAQTRLNTFIDKIVAGYDTTRDQPAIDGTSGL 238
Query: 244 SPHLHFGEVSVRKVFHL-VRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
S +L GE+S + ++ +R A E K G E+ FLK + RE++ ++ + P
Sbjct: 239 SENLALGEISPHQCWYAGLR------AREEEKPGAET---FLKELVWREFAYHLMHHTP- 288
Query: 303 SHERPLLGHLK----FFSWVVDEGY--FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
R L G+ K F W DE + W+QGRTG VDA MRE++ TG +H+R R+
Sbjct: 289 ---RILTGNWKEDWDSFPWNRDETTQAVRRWQQGRTGIQFVDAAMREMYVTGRMHNRGRM 345
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+V+S+ K L W+ G+K+F D L+D D S+A+GWQ+ +G+ PD + R+ NP +
Sbjct: 346 IVASYLTKHLLSDWKIGLKWFEDCLIDWDPASNAMGWQWSAGSGPDATPYFRVFNPVTQL 405
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFD N +YV+RW+ E R PT+ ++A + +A G+ +YP P+V D + R
Sbjct: 406 DKFDKNRQYVKRWVAEERRAPTQTALSYFDA---IPRAWGLSADQDYPAPVVAADEGRKR 462
Query: 477 LDEA 480
EA
Sbjct: 463 ALEA 466
>gi|84684767|ref|ZP_01012667.1| deoxyribodipyrimidine photolyase [Maritimibacter alkaliphilus
HTCC2654]
gi|84667102|gb|EAQ13572.1| deoxyribodipyrimidine photolyase [Maritimibacter alkaliphilus
HTCC2654]
Length = 475
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 159/473 (33%), Positives = 245/473 (51%), Gaps = 26/473 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
I+WFRRDLR+ D+PAL A AG VI +FI +G G ++W L L +L
Sbjct: 7 ILWFRRDLRLSDHPALWAAANAGLVIPLFIRDQSVDGL---GAAAKWRLGEGLRVFGEAL 63
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
G L+ +R ++ L EV++ TGAT++ ++ LYDP ++ RD K AL GI
Sbjct: 64 EDRGLKLILRRG-NARDVLREVIEETGATEVHWSRLYDPEAIERDTDVKSALKEAGIVAE 122
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
S L++EPW V G P+ ++ FW D D PL P +G S SD
Sbjct: 123 SHPGHLIFEPWTVETQTGGPYKVYSPFWRAVKDR--DVDEPLPTPDL--TGPESWPDSDD 178
Query: 188 LV---FEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
L + +G+ +LA+ +PG A L +F+ + Y +R TS +S
Sbjct: 179 LADWALGADMNRGAG-VLAKYCNPGERAATSRLGSFVAQKIDAYKADRDLPAEDATSRMS 237
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
+L +GE+S R+++ + A + KAG E +LK + RE++ ++ ++ P
Sbjct: 238 EYLTYGEISPRQLW-----AAGARAMDAGKAGAEH---YLKEVVWREFAYHLLYHFPQML 289
Query: 305 ERPLLGHLKFFSWVVDE--GYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
F W DE KAW+QGRTG P VDA +RE++ TG++H+R R++V+S+
Sbjct: 290 TENWREGWDDFPWREDERLAEVKAWKQGRTGVPFVDAALREMYVTGYMHNRARMIVASYL 349
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
K + WR G +F D L D D S+A+GWQ+++G PD + R+ NP+ +G KFDP
Sbjct: 350 TKHCMIHWRVGQAWFDDCLTDWDPASNAMGWQWVAGCGPDAAPYFRVFNPETQGEKFDPK 409
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPF-PIVRIDAAK 474
G Y +RW+ E P E + E++ ++ +E G NYP P+V + +
Sbjct: 410 GTYQKRWIAEGQTSPPETAT---DYFEAIPRSWKMEPGGNYPREPVVGLKEGR 459
>gi|421852148|ref|ZP_16284838.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
gi|371479515|dbj|GAB30041.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus subsp.
pasteurianus LMG 1262 = NBRC 106471]
Length = 473
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 159/482 (32%), Positives = 235/482 (48%), Gaps = 26/482 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
+V R D RV DNPAL A G + + R++ W + + + L +SL
Sbjct: 11 LVLLRDDYRVADNPALHAACATGQPVLCAYVQDAALQDAFGTRIADW-AQAACAQLAASL 69
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
G +L S + S+ + +A AT +F+N YD + D +L QG+ V
Sbjct: 70 HEQGQTLFML-SGPTRLSVPTLAQAVHATDVFWNRRYDAPGIAADTDVHASLKKQGVTVH 128
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
S LL+EPW + GQP+ F A+W ++P P P R + P+ T
Sbjct: 129 SCTGRLLFEPWAIRTQAGQPYRVFTAWWRAARNLPEPPPPLPAPDMR----GKNYAPART 184
Query: 188 LVFEDESEKGSNALLARAWSPGWSNADKA----LTTFINGPLIEYSKNRRKADSA-TTSF 242
L D A PGW++ +KA L FI L +Y R +AD+ TS
Sbjct: 185 LTLPDGMRLHRVGTKPPALPPGWTSGEKAAHANLHRFIENALADYETQRDRADAPHGTSL 244
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSP++ G++SVR+++H +R A N + FL +G R+++ F P
Sbjct: 245 LSPYIRVGQISVRQIWHAIRH-----AEHQNPHLATAAEKFLAELGWRDFAWMQMFTTPD 299
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
R L W D AW+QG+TG+PLVDAGMR+L TGW+H+R+R+VV+SF
Sbjct: 300 LATRNLRAEFDHMPWRADAADLAAWQQGQTGFPLVDAGMRQLARTGWMHNRVRMVVASFL 359
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
K L WR G ++F+ LLDAD +A+ WQ+ +GT D + RI NP + K+DP
Sbjct: 360 TKHLLTDWREGERWFYAQLLDADAAVNAMNWQWGAGTGIDAAPWFRIFNPVGQSEKYDPA 419
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
G+Y+R W+PELA L + IH PW + + + YP PIV + + R E+
Sbjct: 420 GQYIRTWVPELAALDNKTIHTPWKSTQHL----------KYPAPIVDLKLGRLRALESWK 469
Query: 483 EM 484
+
Sbjct: 470 NL 471
>gi|332185330|ref|ZP_08387079.1| DNA photolyase family protein [Sphingomonas sp. S17]
gi|332015054|gb|EGI57110.1| DNA photolyase family protein [Sphingomonas sp. S17]
Length = 455
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 155/447 (34%), Positives = 223/447 (49%), Gaps = 40/447 (8%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IVWFR+DLR+ D PAL A AG V+ V+I E G + G RWWL HSL L L
Sbjct: 6 IVWFRQDLRLHDQPALLAAAEAGPVLPVYILDDETPGDWKMGGAQRWWLHHSLEALAKDL 65
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
++LG+ L+ +R +V L + K GA + Y+P ++A G +
Sbjct: 66 KALGSRLILRRGR-AVEVLQALSKEAGAEAIHAIRHYEPWW-------RKAEDELGDRLC 117
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS-- 185
++ + L P V G+PF ++AFW K L P+ PL P + + D R P+
Sbjct: 118 LYDGNHLARPELVTTGSGKPFRIYSAFW-KGLQGHMPPEHPLEAPDALTAPD--RWPASD 174
Query: 186 -----DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
D L + + G +A W+PG + A + + F+ Y R +
Sbjct: 175 KLADWDLLPTKPDWSTGFDA----DWTPGEATARERMADFV-AKAAAYDTARNMPSEEGS 229
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSPHLHFGEVS R V+H + K F K + R+++ +
Sbjct: 230 SRLSPHLHFGEVSPRAVWHALDRKA-------------ETETFRKELAWRDFTDGVVMAI 276
Query: 301 PYSHERPLLGHLKFFSW---VVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
P +R W E KAWR G TGYP+VDAGMR+LW TGW+H+R+R++
Sbjct: 277 PDYADRNGREAFDKMPWRKGAEAEADLKAWRTGHTGYPIVDAGMRQLWTTGWMHNRVRMI 336
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
+SF +K L + WR G ++FWD L+DAD ++++ WQ+++GT D F RI P +
Sbjct: 337 TASFLIKHLLIDWREGERWFWDCLVDADYGNNSVNWQWVAGTGIDANMFGRIMAPLSQSE 396
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHP 444
KFD G+Y+R W+PEL L IH P
Sbjct: 397 KFD-AGDYIREWVPELKDLSDAAIHDP 422
>gi|410479530|ref|YP_006767167.1| deoxyribodipyrimidine photolyase [Leptospirillum ferriphilum ML-04]
gi|406774782|gb|AFS54207.1| deoxyribodipyrimidine photolyase [Leptospirillum ferriphilum ML-04]
Length = 576
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 164/476 (34%), Positives = 236/476 (49%), Gaps = 15/476 (3%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
SIVWFR +LR+ DNP L G ++ VF+ E G P +WW SL LD
Sbjct: 103 SSIVWFRNNLRLLDNPPLREAAERGPLLPVFV--GEHPGKQPPEGARQWWQARSLKRLDH 160
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SL G L+ R D + L ++ A ++ DP R + AL+ + +
Sbjct: 161 SLSRRGAPLLFLRG-DPATLLPDLATRLKADKILAMEAIDPDGRRTQSRLQGALSGKPVE 219
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
+ F A L P D+ + P+ F FW++ S P P R++ R +
Sbjct: 220 LHLFPAGYLISPADLPAERRSPWKVFTPFWQRAQSHLPPPLPLPAP-DRLDGIPFPRTET 278
Query: 186 -DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
D +E E+ + + W PG A + L F+ L Y R + T+S LS
Sbjct: 279 PDDWGWEPENPDWATEMRG-FWDPGEEGAWRRLHAFLEKRLENYRVRRDFLEEDTSSLLS 337
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
PHL GE+S+R V+ WA + + A D+ FL +G RE+S ++ ++HP
Sbjct: 338 PHLANGEISIRSVW---------WAIKESTAPDKDREKFLSELGWREFSAHLMWHHPDLA 388
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
L W D AW++GRTG PLVDAGMR+L G+L +R+R+V +SF VK
Sbjct: 389 SERLHKERPEIRWREDPFSLLAWQKGRTGIPLVDAGMRQLRRLGFLPNRVRMVAASFLVK 448
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L + WR G ++F D L+D D ++A WQ+ISG D + RI NP +G KFDP G
Sbjct: 449 NLLIDWRKGREWFADNLVDHDPANNAASWQWISGYGADAAPWFRIFNPVLQGEKFDPEGR 508
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
YV+ +LPEL L +IH PW AP ++L +AGI S Y PIV + ++ R +A
Sbjct: 509 YVKTYLPELHGLSPRYIHCPWTAPAALLDSAGIGEQSPYRNPIVDLGLSRKRALQA 564
>gi|193216116|ref|YP_001997315.1| deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC
35110]
gi|193089593|gb|ACF14868.1| Deoxyribodipyrimidine photo-lyase [Chloroherpeton thalassium ATCC
35110]
Length = 477
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 144/468 (30%), Positives = 236/468 (50%), Gaps = 19/468 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPE---EEGPYYPGRVSRWWLKHSLSHL 63
IVW RRDLR+ D+ ALA + A +I +FI + + P V ++ SL L
Sbjct: 5 IVWHRRDLRIFDHSALAEAAKFADEIIPIFILDDDILLRREDFSPACVG--FMLESLEAL 62
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
S ++G L+ +R + L +V T A ++FN Y+P + +RD + G
Sbjct: 63 ALSYANIGGKLIVRRG-QVLEVLKSLVGETRAQAIYFNEDYEPFAKMRDQAVQSEFEKLG 121
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
+ V++F + + P V GQP+ F + +K L++ + P RI++ ++
Sbjct: 122 VRVKAFTDQVCFHPQRVLKDNGQPYTVFTPYQKKWLALSGNIPTPQPALTRISTPELPSI 181
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
P D +K S + + P K L F++ + Y + R + TS L
Sbjct: 182 PLPKT--SDIRKKFSVQPIVQGGEP---KGLKRLRAFLSQNIYHYKELRDFPATNATSLL 236
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
S L FG +S+R VFH + + + ++ E + F+ + RE+ + + P+
Sbjct: 237 SADLRFGTLSIRHVFH----ESMRLVPQASEPAREGIQTFISELIWREFYFQILDHFPHV 292
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
+ + W +E +F+AW+ G+TGYP+VDA MR L TGW+H+R+R++V+SF
Sbjct: 293 EKHSFKPEFENLKWENNEVFFEAWKNGQTGYPIVDAAMRALRQTGWMHNRLRMIVASFLT 352
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WRWG YF L+D DL ++ GWQ+ + T D + + RI NP + KFDP G
Sbjct: 353 KDLLIDWRWGELYFMQHLIDGDLAANNGGWQWSASTGTDAQPYFRIFNPVLQSQKFDPKG 412
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPES---VLQAAGIELGSNYPFPIV 468
E++R+++PEL +P +IH P + + G+ LG +YP PIV
Sbjct: 413 EFIRKYVPELQAVPVRYIHFPAEILRKSPLLAREIGVALGKDYPHPIV 460
>gi|254511542|ref|ZP_05123609.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium KLH11]
gi|221535253|gb|EEE38241.1| deoxyribodipyrimidine photolyase [Rhodobacteraceae bacterium KLH11]
Length = 479
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 149/473 (31%), Positives = 243/473 (51%), Gaps = 22/473 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I+WFRRDLR+ D+PAL+A +R G ++ VFI ++ G +W L L
Sbjct: 11 ILWFRRDLRLSDHPALSAAMRTGRPIVPVFI---LDDAVQALGAAPKWRLGLGLEAFAKG 67
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L +G+ L+ ++ ++ L +++ TGA +F++ Y+P+S+ RD R K ALT QGI V
Sbjct: 68 LSQIGSRLILRQGA-ALDVLESLIRDTGAGTVFWSRGYEPVSIARDTRIKSALTGQGIEV 126
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
RSF LL+EPW + GQPF F W D P P R+ + +
Sbjct: 127 RSFAGHLLFEPWTIATKSGQPFRMFTPMWRAVQGR--DVPTPEPGPARLMAPEGWPGSDQ 184
Query: 187 TLVFEDESEKGSNALLARAW-SPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
++ + A +AR + PG A L F++ + +Y++ R + D TS LS
Sbjct: 185 LADWQLGRDMRRGARIARPFIRPGEVAARDQLDGFLHR-IDQYAEQRDRVDKTGTSDLSE 243
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
+L GE+ R ++H V + G + +L+ + RE++ ++ ++ P+
Sbjct: 244 YLSLGEIGPRMIWHRV--------QNAARTGAPGADAYLRQLVWREFAYHLMYHWPHLLT 295
Query: 306 RPLLGHLKFFSWVVDEGY--FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
F W D +AWRQ RTG PLVDAG+R+++ TG +H+R R++V+S+
Sbjct: 296 DNWKPEWDTFPWGTDPDTPEIRAWRQARTGIPLVDAGLRQMYVTGRMHNRARMIVASYLT 355
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L W+ G +F D L D D ++A+GWQ+++G+ PD + RI NPQ + +FDP+
Sbjct: 356 KHLMTHWKLGADWFADCLTDWDPAANAMGWQWVAGSGPDAAPYFRIFNPQTQRVRFDPDE 415
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
Y+RRW+ E P ++A + ++ G+ YP P+V + + R
Sbjct: 416 GYIRRWIAEGQARPEATALAYFDA---IPRSWGLSPDDPYPEPVVGLKQGRTR 465
>gi|152981216|ref|YP_001354641.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille]
gi|151281293|gb|ABR89703.1| deoxyribodipyrimidine photo-lyase [Janthinobacterium sp. Marseille]
Length = 495
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 161/482 (33%), Positives = 246/482 (51%), Gaps = 23/482 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIW--APEEEGPYYPGRVSRWWLKHSLSHL 63
++VWFRRDLR D+ AL +R G V FI+ A +E P RV ++ SL L
Sbjct: 7 TLVWFRRDLRSFDHAALHHALRQGRQVYCAFIFDRAILDELPSTDRRVE--FIHASLQEL 64
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
D++LR+LG L+ R + ++ ++ G +F NH Y+P ++ RD AL G
Sbjct: 65 DTALRALGGGLIV-RHARAEQAIPQLAAELGVDAVFCNHDYEPQAIARDGAVAAALATDG 123
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSMPFDPDAPLLPPKRINS--G 178
++++ +++E +V G+PF+ F + W K L P +P I++
Sbjct: 124 RKLQTYKDHVIFEKDEVLSQSGKPFSVFTPYKNAWLKKLHTELAPAD--MPAYEIDTLRA 181
Query: 179 DMSRCPSDTLVFEDESEKG-SNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
+ P++ SE G L P +AL + +Y R
Sbjct: 182 HFAPLPANLSGIPALSELGFEKTNLTELNIPTGMQGGQALFDDFIDRMPDYDSTRDFPAV 241
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
S+LS HL FG VS+R LVR + + G AG ++L + R++ +
Sbjct: 242 KGPSYLSVHLRFGTVSIRA---LVR-RALDAMRIG--AGGTGAAVWLSELVWRDFYFMIL 295
Query: 298 FNHPYSHERPLLGHLKFFSWVVD---EGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
+ HP+ ER W E F+AW GRTGYPLVDA M +L TG++H+R+
Sbjct: 296 YQHPHVRERAFKPDYDAIIWENGPHAEELFQAWCDGRTGYPLVDAAMAQLNQTGYMHNRL 355
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R+V +SF +K L + WRWG +YF + L D DL ++ GWQ+ S + D + + RI NP
Sbjct: 356 RMVTASFLIKDLGIDWRWGERYFAEKLNDFDLAANNGGWQWASSSGCDAQPYFRIFNPLT 415
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
+ KFDP+G+++RR+LP+L +L + IH PW P LQ AGI LG +YP P+++ D A+
Sbjct: 416 QSEKFDPDGKFIRRYLPQLGKLSGKQIHAPWRVPALELQMAGITLGRDYPHPLLQHDEAR 475
Query: 475 CR 476
R
Sbjct: 476 AR 477
>gi|289580258|ref|YP_003478724.1| deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099]
gi|448281497|ref|ZP_21472802.1| deoxyribodipyrimidine photolyase [Natrialba magadii ATCC 43099]
gi|289529811|gb|ADD04162.1| Deoxyribodipyrimidine photo-lyase [Natrialba magadii ATCC 43099]
gi|445578544|gb|ELY32948.1| deoxyribodipyrimidine photolyase [Natrialba magadii ATCC 43099]
Length = 468
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 157/465 (33%), Positives = 239/465 (51%), Gaps = 25/465 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
+ W RRDLR DN +L+A G+VI FI+ P P RV+ ++ SLS L +
Sbjct: 5 VHWHRRDLRATDNHSLSAAAETGSVIPAFIFDPAVLEFASPPRVA--FMLESLSELRAWY 62
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
R G LV + D L + + GA ++ +N Y L+ RD +EALT GI
Sbjct: 63 RERGGDLVVA-TGDPREELPRIAREHGAERVSWNRDYSGLASKRDEEVREALTDAGIEAT 121
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPP--KRINSGDMSRCPS 185
S + LL+EP + QG+ +A ++ FW+K + ++P+ P +++ S PS
Sbjct: 122 SVDDALLFEPGSITTQQGETYAVYSYFWKKWRDR--EKESPVSAPDGEQLASVSGDSLPS 179
Query: 186 -DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
+ L F+D +A G A + L TF P+ Y+ R + TS LS
Sbjct: 180 QEALGFDDPEATIPDA--------GMEAARRRLETFCADPIYRYADQRDDPAADATSGLS 231
Query: 245 PHLHFGEVSVRKVFH-LVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
PHL +G + +R V+ L R K + ++A +S F + R + ++ +P++
Sbjct: 232 PHLKWGTIGIRTVYEALDRAK----SEAPDEAAADSCEEFESQLAWRAFYAHVLDTNPHT 287
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
+ W D +AW+ G+TGYP+VDAGMR+L A ++H+R+R++V+SF
Sbjct: 288 VTANYRSYENPIQWQTDAAALQAWKDGKTGYPIVDAGMRQLRAEAFMHNRLRMIVASFLT 347
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L L WR G +F + L D D SD GWQ+ SGT D + + RI NP +G + DP+
Sbjct: 348 KDLMLDWREGYAWFREKLADHDTASDVGGWQWASGTGTDAQPYFRIFNPMTQGERHDPDA 407
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
EY+R ++PELA +P E IH W A E +A+ + YP PIV
Sbjct: 408 EYIRTYVPELADVPAETIHE-WVALEPDERAS---VAPEYPDPIV 448
>gi|421851103|ref|ZP_16284024.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus NBRC
101655]
gi|371458034|dbj|GAB29227.1| deoxyribodipyrimidine photolyase [Acetobacter pasteurianus NBRC
101655]
Length = 473
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 158/485 (32%), Positives = 234/485 (48%), Gaps = 32/485 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRW--WLKHSLSHLD 64
+V R D RV DNPAL A G V+ ++ ++ +R W + + + L
Sbjct: 11 LVLLRDDYRVADNPALHAACATGQPVLCAYV----QDAALQDASGTRIADWAQAACAQLA 66
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+SL G +L S + S+ + +A AT +F+N YD + D +L QG+
Sbjct: 67 TSLHEQGQTLFML-SGPTRLSVPALAQAVHATDVFWNRRYDAPGIAADTDVHASLKKQGV 125
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V S LL+EPW + GQP+ F A+W ++P P P R + P
Sbjct: 126 TVHSCTGRLLFEPWAIRTQAGQPYRVFTAWWRAARNLPEPPPPLPAPDIR----GKNYAP 181
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKA----LTTFINGPLIEYSKNRRKADSA-T 239
+ TL D A GW++ +KA L FI L +Y R +AD+
Sbjct: 182 ARTLTLPDGVRLHRVGTQPPALPSGWTSGEKAAHANLHRFIENALADYETQRDRADAPHG 241
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP++ G++SVR+++H +R A N FL +G R+++ F
Sbjct: 242 TSLLSPYIRVGQISVRQIWHAIRH-----AEHQNPHLATPAEKFLAELGWRDFAWMQMFT 296
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P R L W D AW+QG+TG+PLVDAGMR+L TGW+H+R+R+VV+
Sbjct: 297 TPDLATRNLRAEFDHMPWRADAADLAAWQQGQTGFPLVDAGMRQLARTGWMHNRVRMVVA 356
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF K L WR G ++F+ LLDAD +A+ WQ+ +GT D + RI NP + K+
Sbjct: 357 SFLTKHLLTDWREGERWFYAQLLDADAAVNAMNWQWGAGTGIDAAPWFRIFNPVGQSEKY 416
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP G+Y+R W+PEL L + IH PW + + + YP PIV + + R E
Sbjct: 417 DPAGQYIRTWVPELVALDNKTIHTPWKSTQRL----------KYPAPIVDLKLGRLRALE 466
Query: 480 ALSEM 484
+
Sbjct: 467 CWKNL 471
>gi|452751360|ref|ZP_21951106.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium JLT2015]
gi|451961510|gb|EMD83920.1| Deoxyribodipyrimidine photolyase [alpha proteobacterium JLT2015]
Length = 468
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 160/480 (33%), Positives = 237/480 (49%), Gaps = 32/480 (6%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+I+WFR DLR+ D A+ A G V+ V++ G + G RWWL HSL L
Sbjct: 2 TTIIWFREDLRLSDQAAVRAAAEDGPVVPVYVLDDTSPGKWKMGGAQRWWLHHSLKSLSE 61
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SLR G L+ + SV + + G ++ Y+P +A+E + +
Sbjct: 62 SLREKGLRLILLKGEASVK-IGALADKLGIERVHAVQHYEPWW-----KAQEEKLSNRLE 115
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGD----MS 181
+ LL P V G P+ + FW + L P P+ P+ + + D
Sbjct: 116 LCLHPGRLLAPPGSVTTKSGDPYKIYTPFW-RSLQGIMPPPEPVRRPRTMQAPDEWPGFD 174
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
L+ +D G W+PG A F + + +Y++ R TS
Sbjct: 175 ELDDWNLLPKDPDWAGGFDF----WTPGEHGARSRAHNFAD-EVEDYNEGRNLPSRELTS 229
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSPHLH GE+S V+H+V K W ++V FL + R++S + P
Sbjct: 230 RLSPHLHMGEISPADVWHIVS-KNRQW---------QTVEPFLSELAWRDFSTQVIDMFP 279
Query: 302 YSHERPLLGHLKFFSWV---VDEGY--FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
+ H + W EG +AW++GRTGYP+VDAGMRELWATGW+H+R+R+
Sbjct: 280 DYGDTSGRDHFRNMEWTDHREGEGREALRAWQRGRTGYPIVDAGMRELWATGWMHNRVRM 339
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+ + F +K L + WR G ++FWDTL+DAD +++ WQ+ +G+ D F R+ NP+ +
Sbjct: 340 IAAQFLIKHLLIDWREGERWFWDTLVDADYGNNSQNWQWSAGSGIDSHPFYRMMNPKTQS 399
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
K+D +Y+R W+PEL LP IH PW A E L+AAG+ LG YP PIV AA+ R
Sbjct: 400 PKWDA-ADYIREWVPELKDLPDGAIHVPWEADEGALEAAGVTLGDTYPEPIVEHRAARER 458
>gi|347754095|ref|YP_004861659.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
gi|347586613|gb|AEP11143.1| deoxyribodipyrimidine photo-lyase type I [Candidatus
Chloracidobacterium thermophilum B]
Length = 475
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 157/465 (33%), Positives = 235/465 (50%), Gaps = 24/465 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+ WFRRDLR++DN AL A A V+ VFI+ G V +L SL +LD +
Sbjct: 6 LCWFRRDLRLDDNTALLAAYAAAEEVVPVFIFDDAILSRPDTGAVRVAFLLESLRNLDEN 65
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
LR+ G+ L+ +R L ++V T A+ ++FN +P +L RD R + L + AV
Sbjct: 66 LRARGSRLLLRRGRPE-HVLAQLVTETAASAVYFNRDVEPFALARDARVRAHLEGR-CAV 123
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
F+ L P V G P+ F + + L+ P +P R+ M R P+D
Sbjct: 124 EGFDDGGLTAPEAVRTKAGTPYTVFTPYRQAVLAQP-------IPRPRLAPA-MLRTPAD 175
Query: 187 TLVFEDESEKGSNALLARAWSP---GWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
V D + A + SP G ++A L FI L Y+ R + TS L
Sbjct: 176 --VPSDPWPSLKDLGFATSVSPPPGGETSAQARLQGFIQNGLARYATERDVLSADGTSRL 233
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SP+L FG +S R+ + R E G + ++ + R++ R + F+ PY
Sbjct: 234 SPYLRFGCLSPRRAYWAAR--------EAVPEGSPGMESWIAELIWRDFYRQILFHFPYV 285
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
+W + +F W QG+TG+P+VDA MR+L TGW+H+R R++V+SF
Sbjct: 286 ETGAFRRAYDDLAWENNASWFDLWCQGKTGFPIVDAAMRQLLTTGWMHNRARMIVASFLT 345
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WRWG ++F L+D DL ++ GWQ+ + T D + + RI NP +G KFDP G
Sbjct: 346 KDLLIDWRWGERHFMKHLVDGDLAANNGGWQWAASTGTDAQPYFRIFNPTAQGKKFDPTG 405
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
YVR+++PEL +P WIH P P V +A +G +YP P+V
Sbjct: 406 AYVRQYVPELRAVPDRWIHEPSRMPPDVQRAFRCVIGVDYPAPLV 450
>gi|323358558|ref|YP_004224954.1| deoxyribodipyrimidine photolyase [Microbacterium testaceum StLB037]
gi|323274929|dbj|BAJ75074.1| deoxyribodipyrimidine photolyase [Microbacterium testaceum StLB037]
Length = 456
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 156/482 (32%), Positives = 239/482 (49%), Gaps = 38/482 (7%)
Query: 7 SIVWFRRDLRVEDNPALAAGV-RAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S+VWFR DLR+ DNPAL A + R ++A+++ E +G G +RWWL SL+ L
Sbjct: 5 SVVWFRDDLRLTDNPALRAALDREEPIVALYLLDEESDGVRSIGGAARWWLHGSLASLGE 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L G LV +R + + VV+ GA +F+N Y + D KE L G+
Sbjct: 65 RLEERGGRLVLRRGR-AAEVVPAVVEEVGAGAVFWNRRYGGVEREIDAGIKEKLRGDGVT 123
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
V SF A+LLYEPW V +P+ ++ F +P P +P R G
Sbjct: 124 VASFAANLLYEPWTVRTQADKPYGVYSPFARAVQKLP--APRPPMPEARKVPGFDGHVDG 181
Query: 186 DTLVFED--ESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
D L D ++ L W PG L F++ L +YSK R + TS L
Sbjct: 182 DDLAAWDLLPTKPDWAGGLRETWEPGEPAGKARLKEFLDDDLGDYSKYRDEFAGGATSNL 241
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SP L +GE+S +V+H + A+ G+ +S + FL + RE++ +++++ P
Sbjct: 242 SPRLRWGELSPYEVWH------ETIAHRGSGEHAQSASGFLSELVWREFAWHVTYHSPDI 295
Query: 304 HERPLLGHLKFFSWV-VDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ F W ++ + + W+QG+TG +VDAGMR+LW TG +H+R+R+V +SF
Sbjct: 296 ATVNWRRNFDAFPWPRLNRAHLETWQQGKTGVAVVDAGMRQLWHTGVMHNRVRMVTASFL 355
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
+K L + WR G ++FWD L+DAD S+ WQ+++G+ D + R+ NP + KFDP+
Sbjct: 356 IKNLLIDWRHGEQWFWDCLVDADAASNPFNWQWVAGSGADAAPYFRVFNPDTQRKKFDPH 415
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
YVR W PE LG N P P+V + + R +A +
Sbjct: 416 DAYVREWAPEY-------------------------LGENPPEPMVDLGETRKRALDAYA 450
Query: 483 EM 484
E+
Sbjct: 451 EV 452
>gi|71084006|ref|YP_266726.1| deoxyribodipyrimidine photo-lyase [Candidatus Pelagibacter ubique
HTCC1062]
gi|71063119|gb|AAZ22122.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
(Photoreactivating enzyme) [Candidatus Pelagibacter
ubique HTCC1062]
Length = 473
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/477 (27%), Positives = 233/477 (48%), Gaps = 21/477 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVI-AVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVW R D R+E N ALA + + A++I+ P+ +WWL SL +L
Sbjct: 5 AIVWIREDFRIEYNEALATATQNHEYVSAIYIYNPKNFDK--KREAQKWWLSKSLENLSI 62
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L+ L +L + + +L ++K ++++ +Y+P + + + ++ I
Sbjct: 63 DLKKLNITLEVQLGDEL--EVLSILKKKDDVTVYWSKVYEPDVINKGKKIRDLFIKNEIQ 120
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
+ F ++L E ++ G P+ F FW+K L + ++ +
Sbjct: 121 YKYFKGNILVEFQEMTKDDGTPYKVFTPFWKKTEQHYISKAPSKLIRVKSKIKKINIFKN 180
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
+ E +K + + W P A K L IN + +Y R TS LSP
Sbjct: 181 SISIKEILPKKNWHKKFEKYWDPSEKEAKKYLQELINNKIEDYGDARDIPGVNGTSKLSP 240
Query: 246 HLHFGEVSVRKVFHL---VRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
L FG++ V ++ +++K++ + ++ +G RE+S + P
Sbjct: 241 FLKFGQIHVETIWKKCQDIKVKKIGYRK------------YINELGWREFSHSLINYFPQ 288
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ L F WV ++ + KAW+ G TGYP+VDAGMREL+ TGW+H+R+R++V+SF
Sbjct: 289 MLKGNLRKDFDNFPWVKNDKFLKAWKAGMTGYPIVDAGMRELYETGWMHNRVRMIVASFL 348
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L++ W G K+F + L+D + S+ WQ+++G D + RI NP +G KFD +
Sbjct: 349 VKHLRIHWMEGEKHFKNCLVDYNEASNVAQWQWVAGCGADAAPYFRIFNPILQGEKFDKD 408
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV-RIDAAKCRLD 478
G Y ++W+PEL +P ++++ PW + + +G NYP PI+ ++A LD
Sbjct: 409 GIYTKKWVPELKNMPNKFLYKPWELETKYQEQIKVIVGINYPKPIIDHVEARNAALD 465
>gi|91762930|ref|ZP_01264895.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
(Photoreactivating enzyme) [Candidatus Pelagibacter
ubique HTCC1002]
gi|91718732|gb|EAS85382.1| Deoxyribodipyrimidine photolyase (DNA photolyase)
(Photoreactivating enzyme) [Candidatus Pelagibacter
ubique HTCC1002]
Length = 473
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 134/477 (28%), Positives = 232/477 (48%), Gaps = 21/477 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVI-AVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVW R D R+E N ALA + + A++I+ P+ +WWL SL +L
Sbjct: 5 AIVWIREDFRIEYNEALATATQNHEYVSAIYIYNPKNFDK--KREAQKWWLSKSLENLSI 62
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L+ L +L + + +L ++K ++++ +Y+P + + + ++ I
Sbjct: 63 DLKKLNITLEVQLGDEL--EVLSILKKKDDVTVYWSKVYEPDVINKGKKIRDLFIKNEIQ 120
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
+ F ++L E ++ G P+ F FW+K L + ++ +
Sbjct: 121 YKYFKGNILIEFQEMTKDDGTPYKVFTPFWKKTEQHYISKAPSKLIRVKSKIKKINIFKN 180
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
+ E +K + + W P A K L IN + +Y R TS LSP
Sbjct: 181 SISIKEILPKKNWHKKFEKYWDPSEKEAKKYLQELINNKIEDYGDARDIPGVNGTSKLSP 240
Query: 246 HLHFGEVSVRKVFHL---VRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
L FG++ V ++ +++K++ + ++ +G RE+S + P
Sbjct: 241 FLKFGQIHVETIWKKCQDIKVKKIGYRK------------YINELGWREFSHSLINYFPQ 288
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ L F WV ++ + KAW+ G TGYP+VDAGMREL+ TGW+H+R+R++V+SF
Sbjct: 289 MLKGNLRKDFDNFPWVKNDKFLKAWKAGMTGYPIVDAGMRELYETGWMHNRVRMIVASFL 348
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L++ W G K+F + L+D + S+ WQ+++G D + RI NP +G KFD
Sbjct: 349 VKHLRIHWMEGEKHFKNCLVDYNEASNVAQWQWVAGCGADAAPYFRIFNPILQGEKFDKA 408
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV-RIDAAKCRLD 478
G Y ++W+PEL +P ++++ PW + + +G NYP PIV ++A LD
Sbjct: 409 GIYTKKWVPELKNMPNKFLYKPWELETKYQEQIKVIVGINYPKPIVDHVEARNAALD 465
>gi|184201932|ref|YP_001856139.1| deoxyribodipyrimidine photo-lyase [Kocuria rhizophila DC2201]
gi|183582162|dbj|BAG30633.1| deoxyribodipyrimidine photo-lyase [Kocuria rhizophila DC2201]
Length = 441
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 151/427 (35%), Positives = 215/427 (50%), Gaps = 17/427 (3%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
++V FR DLRV D+PAL V G V+ +++ E EG G ++WWL HSL+ L
Sbjct: 2 TTVVLFRDDLRVTDHPALHEAVSHGEPVVCLYVLDEESEGVRPLGGAAKWWLHHSLTSLA 61
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
S L LG L +R + + VV+ TGA +L +N Y D KE G+
Sbjct: 62 SDLSELGVPLTLRRGP-AGKVVPHVVRETGADRLLWNRRYGGPERAVDAGLKEWAGENGV 120
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
S+ L++EPW V+ G P+ F FW C S P + P I+ D +
Sbjct: 121 EAHSYAGSLMFEPWTVSTQNGDPYRVFTPFWRACTSGPPPREPYPAP-SSIDHADPAPAS 179
Query: 185 SDTLVFED-ESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
D + +E + + LAR W+ G A + L F++ L Y+++R TS L
Sbjct: 180 EDLVDWELLPTHPDWSGGLARTWTVGERAAHERLDEFLDERLPRYTQDRDVPARPATSGL 239
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SPHL +GE+S V+H + E+ FL +G RE+S Y + HP
Sbjct: 240 SPHLRWGEISPYTVWHTALERA------------ENPGKFLTEVGWREFSWYNLYVHPDM 287
Query: 304 HERPLLGHLKFFSWV-VDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ F W +DE AW+ GRTG PLVDAGM ELW TG + +R+R+VV+S
Sbjct: 288 ATENINPKFDAFPWPPLDEDVLAAWQMGRTGIPLVDAGMHELWETGAMQNRVRMVVASLL 347
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
K L + WR G ++FWDTL+DAD S+ WQ+++G D + RI N + + KFDP+
Sbjct: 348 AKNLLIDWRLGEQWFWDTLVDADPASNPHNWQWVAGCGTDAAPYFRIFNAETQQKKFDPD 407
Query: 423 GEYVRRW 429
YV RW
Sbjct: 408 FVYVDRW 414
>gi|329115122|ref|ZP_08243877.1| Deoxyribodipyrimidine photo-lyase [Acetobacter pomorum DM001]
gi|326695565|gb|EGE47251.1| Deoxyribodipyrimidine photo-lyase [Acetobacter pomorum DM001]
Length = 522
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 155/484 (32%), Positives = 235/484 (48%), Gaps = 30/484 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIW-APEEEGPYYPGRVSRWWLKHSLSHLDS 65
+V R D RV DNPAL A G V+ ++ A ++ P R++ W + + + L +
Sbjct: 60 LVLLRDDYRVADNPALHAACATGQPVLCAYVQDAALQDAPT--TRIAGW-AQAACAQLAT 116
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SL G +L+ S + S+ + +A AT +F+N YD + D +L QG+
Sbjct: 117 SLHKQGQTLLML-SGPTRLSVPALAQAINATDVFWNRRYDAPGIAADTDVHASLKKQGVT 175
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
V S LL+EPW + GQP+ F A+W D P P + S P+
Sbjct: 176 VHSCTGRLLFEPWAIRTQAGQPYRVFTAWWRAAR----DLPEPPPPLPAPDMHGKSYVPA 231
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTT----FINGPLIEYSKNRRKADSA-TT 240
L + PGW++ ++ T FI L +Y R + D+ T
Sbjct: 232 RALNLPEGVRLARVGTQMPPALPGWTSGEQCAHTNLHRFIENALEDYETQRDRTDATHGT 291
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP++ G++SVR+++H +R A + FL +G R+++ F
Sbjct: 292 SLLSPYIRVGQISVRQIWHAIRH-----AAHLHPQLATDAEKFLAELGWRDFAWMQMFTT 346
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P R L W D AW+QG+TG+PLVDAGMR+L TGW+H+R+R+VV+S
Sbjct: 347 PDLATRNLRAEFNHMPWRTDATDLAAWQQGQTGFPLVDAGMRQLARTGWMHNRVRMVVAS 406
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L W+ G ++F+ LLDAD +A+ WQ+ +GT D + RI NP + K+D
Sbjct: 407 FLTKHLLTDWQKGERWFYAHLLDADAAVNAMNWQWGAGTGIDAAPWFRIFNPVGQSEKYD 466
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P G+Y+R W+PELA L + IH PW + + + NYP PIV + + R E
Sbjct: 467 PLGQYIRTWVPELAALDNKTIHTPWKSAQRL----------NYPPPIVDLKLGRLRALEC 516
Query: 481 LSEM 484
+
Sbjct: 517 WKNL 520
>gi|94498268|ref|ZP_01304828.1| Deoxyribodipyrimidine photolyase [Sphingomonas sp. SKA58]
gi|94422270|gb|EAT07311.1| Deoxyribodipyrimidine photolyase [Sphingomonas sp. SKA58]
Length = 458
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 151/445 (33%), Positives = 220/445 (49%), Gaps = 33/445 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
++WFR+DLR+ D AL A G V+ V++ + + G SRWWL HSL+ LD +L
Sbjct: 6 LLWFRQDLRLSDQAALIAAASEGPVVPVYVLDDDTPRQWVMGGASRWWLHHSLASLDRAL 65
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
R G+ L +R S L + K GA ++ H Y+P R E A+ + +
Sbjct: 66 REKGSRLTLRRGK-SADVLQALAKECGAGRVHALHHYEPW-----WRNAEKAVAKALDLC 119
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCL-SMPFDPDAPLLPPKRINSGD----MSR 182
+ LL P V G + + F + MP P AP P I++ + R
Sbjct: 120 LHDGILLLPPGAVRTGSGGIYKIYTPFARAVMEQMP--PAAPNRTPATIDAPESWPETDR 177
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
L+ G + W+PG A + FI+ + +Y R TS
Sbjct: 178 LSDWGLLPTKPDWAGG---FKKDWTPGEDGARANVAAFID-EVGDYPTGRNLPSVEGTSR 233
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHLH+GEVS V+H V A + +FLK + R+Y+ P
Sbjct: 234 LSPHLHYGEVSPAYVWHRV------------TASNADAEIFLKELIWRDYTHTQICEMPA 281
Query: 303 SHERPLLGHLKFFSWV---VDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
+ W G F AW++GRTGYP+VDAGMR+LW TGW+H+R+R++ +
Sbjct: 282 YGSKNARDDFDRMDWRDLREARGDFVAWKKGRTGYPIVDAGMRQLWTTGWMHNRVRMIAA 341
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF +K L + WR G K+FWDTL+DAD ++++ WQ+++G+ D F RI P + KF
Sbjct: 342 SFLIKHLLIDWRHGAKWFWDTLVDADYANNSVNWQWVAGSGIDANMFSRIMAPLTQSEKF 401
Query: 420 DPNGEYVRRWLPELARLPTEWIHHP 444
D G+Y+R+W+PELA L E IH P
Sbjct: 402 DA-GDYIRQWVPELAALSNEVIHDP 425
>gi|414588985|tpg|DAA39556.1| TPA: hypothetical protein ZEAMMB73_155634 [Zea mays]
Length = 546
Score = 231 bits (589), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 113/171 (66%), Positives = 130/171 (76%), Gaps = 20/171 (11%)
Query: 154 FWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNA 213
FW +CL MP DP APLLPPKRINSGD+SRCP D LVFEDESE+GSNALLARAWSPGW NA
Sbjct: 2 FWNRCLCMP-DPTAPLLPPKRINSGDLSRCPWDELVFEDESERGSNALLARAWSPGWQNA 60
Query: 214 DKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGN 273
DKALT F+NG L++YS NR+K DSA+TS LSP+LHF E+SVRKVFH VR+K++ W+N+GN
Sbjct: 61 DKALTAFLNGSLMDYSVNRKKIDSASTSLLSPYLHFSELSVRKVFHQVRMKRLMWSNDGN 120
Query: 274 KAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYF 324
AG+ES LFL SIGLREYSR FF WVV+E Y
Sbjct: 121 HAGEESCTLFLCSIGLREYSR-------------------FFPWVVNEVYI 152
>gi|384261840|ref|YP_005417026.1| Deoxyribodipyrimidine photo-lyase type I [Rhodospirillum
photometricum DSM 122]
gi|378402940|emb|CCG08056.1| Deoxyribodipyrimidine photo-lyase type I [Rhodospirillum
photometricum DSM 122]
Length = 369
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/352 (39%), Positives = 191/352 (54%), Gaps = 21/352 (5%)
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
+A +S LL++P + G P+ F FW + DP P P R+ +
Sbjct: 1 MAFQSHAGLLLHDPERLTTRSGTPYGVFTPFWNTLVKT-VDPGRPEPAPTRVPAPPT--L 57
Query: 184 PSDTLVFEDESEKGSN----ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
P+ + ED + + S A L AW+PG ++A + L F+ L Y+ R + D
Sbjct: 58 PASERL-EDWALRPSAPDWAAGLRAAWTPGEASAQERLDAFLAAGLEGYADLRDRPDRPA 116
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS L+P L +GE+S R+++ +++ S EG FL+ +G RE+ +
Sbjct: 117 TSKLAPSLAWGEISPRQIWSACQMRPPSPGREG----------FLRQLGWREFCYHGLHR 166
Query: 300 HPYSHERPLLGHLKFFSWVVDE---GYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
P ERPL F W E WR+G TGYPLVDAGMR LWATGW+H+R+R+
Sbjct: 167 FPDMAERPLKAPFARFPWAGPEESQAALARWRRGLTGYPLVDAGMRALWATGWMHNRVRM 226
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
VV+SF VK L + WR G+ +F DTL+DAD ++ GWQ+++G D + RI NP +
Sbjct: 227 VVASFLVKHLLVDWRAGLAWFHDTLVDADPANNPAGWQWVAGCGSDAAPYFRIFNPVTQA 286
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
+FDP G YVRRW+PELARLP IH PW A L AAG+ LG NYP P V
Sbjct: 287 ERFDPEGAYVRRWVPELARLPAPVIHRPWTASALDLAAAGVRLGQNYPRPQV 338
>gi|296775719|gb|ADH42995.1| Deoxyribodipyrimidine photolyase [uncultured SAR11 cluster alpha
proteobacterium H17925_38M03]
Length = 466
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 142/491 (28%), Positives = 231/491 (47%), Gaps = 37/491 (7%)
Query: 4 RGCSIVWFRRDLR-VEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSH 62
+ + W R D R V+++ + A + V+ +++ ++ Y +WWL SLS+
Sbjct: 3 KKIGLFWLRDDFRFVKNHGLIEATTKHNQVVVFYLY---KKNIYNDQEAQKWWLSKSLSN 59
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L L L T+S + + +++N +Y+P L D
Sbjct: 60 FKKKLNELNIVLEI-VETNSFKIFFDALIKKKDFXIYWNKVYEPDYLKFDEYLLNIFKNN 118
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
I + F + L E ++ G PF F FW F P +R+ + +
Sbjct: 119 NIYXKRFKGNALNEINEIKKGDGTPFKVFTPFWRTAEKF-FSEKIP--SKERV----IKK 171
Query: 183 CPSDTLVFEDE-------SEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
C + T F++ EK + W P +A K L FI ++ YS+ R
Sbjct: 172 CKNKTNFFKNSISVEKILPEKDWFKNFEKIWLPDEQHAFKELQKFIKERIVNYSEGRNFP 231
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNL--FLKSIGLREYS 293
TS LSP + FG++ V ++ NE K + + FL IG RE++
Sbjct: 232 SIKGTSKLSPFIKFGQLHVETIW-----------NECIKKKPKKIGTSKFLTEIGWREFN 280
Query: 294 RYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDR 353
+ + P+ + F W + + W++G TGYP+VDAGMREL++TGW+H+R
Sbjct: 281 HSLINHFPHMLKSNYSKKFDKFPWEKNSKFLDKWKKGMTGYPIVDAGMRELYSTGWMHNR 340
Query: 354 IRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQ 413
+R++V SF VK L + W++G KYF + LLD S+ GWQ+++G D + RI NP
Sbjct: 341 VRMIVGSFLVKHLLIDWKYGEKYFKNCLLDYSPASNVSGWQWVAGCGADAAPYFRIFNPI 400
Query: 414 FEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAA 473
+G KFD +GEYV++W+PEL L ++IH PW +LG +YP+PIV+ + A
Sbjct: 401 LQGEKFDKDGEYVKKWVPELKNLSKKFIHKPWE-----FNNEKFKLGRDYPYPIVKHEEA 455
Query: 474 KCRLDEALSEM 484
+ + A ++
Sbjct: 456 REKALNAFKKI 466
>gi|448357813|ref|ZP_21546508.1| deoxyribodipyrimidine photolyase [Natrialba chahannaoensis JCM
10990]
gi|445648121|gb|ELZ01083.1| deoxyribodipyrimidine photolyase [Natrialba chahannaoensis JCM
10990]
Length = 466
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 150/463 (32%), Positives = 229/463 (49%), Gaps = 17/463 (3%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++ W RRDLR DN +L+A G+VI F++ P P RV+ ++ SLS L +
Sbjct: 1 MTVHWHRRDLRAADNRSLSAAAETGSVIPAFVFDPAVLEYASPPRVA--FMLESLSELRA 58
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
R G+ LV + D L + + A + +N Y L+ RD +EALT G+
Sbjct: 59 WYRERGSDLVVA-TGDPRDELPRIAREHDAESVSWNRDYSGLASKRDEAVREALTDAGLE 117
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
S + LL+EP + QG+ +A ++ FW+K + P +++ S PS
Sbjct: 118 ATSVDDALLFEPGSITTQQGETYAVYSYFWKKWRDREKESPVPAPNGEQLASVSGDPLPS 177
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
+ DE E A G A + L TF P+ Y+ R + TS LSP
Sbjct: 178 QEALGFDEPE-------ANIPDTGMEAARRRLETFCADPIYRYADQRDDPAADATSGLSP 230
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
HL +G + +R V+ V + + + A +S F + R + ++ +P++
Sbjct: 231 HLKWGTIGIRTVYEAVERAK---SEAPDDATADSCEEFESQLAWRAFYAHVLATNPHTVT 287
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
+ W D +AW+ G TGYP+VDAGMR+L A ++H+R+R++V+SF K
Sbjct: 288 TNYRSYENPIQWRTDAAALQAWKDGTTGYPIVDAGMRQLRAEAFMHNRLRMIVASFLTKD 347
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
L L WR G +F + L D D SD GWQ+ SGT D + + RI NP +G + DP+ EY
Sbjct: 348 LLLDWREGYAWFREKLADHDTASDVGGWQWASGTGTDAQPYFRIFNPMTQGERHDPDAEY 407
Query: 426 VRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
+R ++PEL +P E IH W A E +A+ + YP PIV
Sbjct: 408 IRTYVPELEDVPAETIHE-WVALEPDERAS---VAPEYPDPIV 446
>gi|347528151|ref|YP_004834898.1| deoxyribodipyrimidine photo-lyase [Sphingobium sp. SYK-6]
gi|345136832|dbj|BAK66441.1| deoxyribodipyrimidine photo-lyase [Sphingobium sp. SYK-6]
Length = 458
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 161/477 (33%), Positives = 240/477 (50%), Gaps = 42/477 (8%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
I+W RRDLR+ D AL A G V+ V++ E G SRWWL SL+ L L
Sbjct: 6 ILWLRRDLRLGDQAALLAACAEGPVVPVYVLDDETPDHRRMGAASRWWLHGSLASLAGDL 65
Query: 68 RSLGTSLVTKRS-TDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
R+ G+ LV +R D V L + + GA ++ H Y+P R E A+ + +
Sbjct: 66 RASGSRLVLRRGRADEV--LPALAREVGARRVHALHHYEPWW-----RNAERAIARVLDL 118
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
+ + L+ P + G P+ F FW + L P P+ P +I + S P+
Sbjct: 119 VLHDGNYLHPPGLLKSGSGSPYRIFTPFW-RALRETMPPPEPMARPDKIPAP--SSWPAS 175
Query: 187 TLVFEDESEKGSN----ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+ +D S + S+ +ARAW PG A L F + +Y R +S
Sbjct: 176 EHL-DDWSLRPSSPDWATGMARAWQPGEQGALDRLEAFADS-AGDYDIARNLPSVEGSSR 233
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSPHLHFGE+S ++H + + D +L+ + R+Y++ + HP
Sbjct: 234 LSPHLHFGEISPSLIWHRIARR------------DGRTEPYLRELAWRDYAQTVILQHPR 281
Query: 303 SHERPLLGHLKFFSWV-VDEGY--FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
F W + E F+AW++GRTGYP+VDAGMR+LW TGW+H+R+R++ +
Sbjct: 282 HGSANGRAQFDDFPWRDLREAASDFEAWKRGRTGYPIVDAGMRQLWTTGWMHNRVRMIAA 341
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L + WR G ++FWDTL+DAD ++++ WQ+++GT D F RI P + KF
Sbjct: 342 SFLVKHLLIDWRHGEQWFWDTLIDADYGNNSVNWQWVAGTGIDSSMFVRIMAPLGQSAKF 401
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
D +Y+RRW+PELA LP +H P ++ G S YP I+ AA+ R
Sbjct: 402 D-AADYIRRWVPELAGLPDGVVHDP--------ESHGFR-PSGYPVRIIDHRAARER 448
>gi|339503748|ref|YP_004691168.1| deoxyribodipyrimidine photo-lyase PhrB [Roseobacter litoralis Och
149]
gi|338757741|gb|AEI94205.1| deoxyribodipyrimidine photo-lyase PhrB [Roseobacter litoralis Och
149]
Length = 472
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 170/484 (35%), Positives = 255/484 (52%), Gaps = 35/484 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFRRDLR+ D+PAL A V++G VI VFI + E G +W L + HL +
Sbjct: 7 LVWFRRDLRLSDHPALNAAVKSGNPVIPVFIHDDQVE---TLGAAPKWRLGLGIDHLSET 63
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L L + L+ +R ++ +L +V+ TGA +F+ LYDP ++ RD K AL GI
Sbjct: 64 LEGLNSRLILRRGP-ALETLRTLVQETGAGAVFWTRLYDPAAVDRDTELKAALKQDGIDA 122
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM---SRC 183
RSF L++EPW V G + + FW + D DAPL P +I + D S
Sbjct: 123 RSFGGHLMFEPWTVETKTGGFYKVYTPFWNMVKNR--DVDAPLSAPAKIPAPDAWPSSEA 180
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
SD ++G+ A++A G + A L+TFI+ + Y R + TS L
Sbjct: 181 LSD-WNMGAAMDRGA-AVVAPYVRLGEAAAQTRLSTFIDKIVARYDTTRDQPAVDGTSGL 238
Query: 244 SPHLHFGEVSVRKVFHL-VRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
S +L GE+S + +H +R +Q EG K G E+ FLK + RE++ ++ + P
Sbjct: 239 SENLALGEISPHQCWHAGLRARQ-----EG-KPGAET---FLKELVWREFAYHLMHHTP- 288
Query: 303 SHERPLLGHLK----FFSWVVDEGY--FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
R L + K F W DE W+QGRTG VDA MREL+ TG +H+R R+
Sbjct: 289 ---RILTDNWKEGWDSFPWNRDETTEAVMRWQQGRTGIQFVDAAMRELYVTGRMHNRGRM 345
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+V+S+ K L W+ G+K+F L+D D S+A+GWQ+ +G+ PD + R+ NP +
Sbjct: 346 IVASYLTKHLLSDWKIGLKWFEGCLIDWDPASNAMGWQWSAGSGPDATPYFRVFNPVTQL 405
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFD + +YV+RW+ + R P+E ++A + +A G+ YP P+V D + R
Sbjct: 406 DKFDKDRQYVKRWIAQGRRAPSETALSFYDA---IPRAWGLSGDQEYPAPVVAADEGRKR 462
Query: 477 LDEA 480
EA
Sbjct: 463 ALEA 466
>gi|414588984|tpg|DAA39555.1| TPA: hypothetical protein ZEAMMB73_155634 [Zea mays]
Length = 618
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/171 (66%), Positives = 130/171 (76%), Gaps = 20/171 (11%)
Query: 154 FWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNA 213
FW +CL MP DP APLLPPKRINSGD+SRCP D LVFEDESE+GSNALLARAWSPGW NA
Sbjct: 2 FWNRCLCMP-DPTAPLLPPKRINSGDLSRCPWDELVFEDESERGSNALLARAWSPGWQNA 60
Query: 214 DKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGN 273
DKALT F+NG L++YS NR+K DSA+TS LSP+LHF E+SVRKVFH VR+K++ W+N+GN
Sbjct: 61 DKALTAFLNGSLMDYSVNRKKIDSASTSLLSPYLHFSELSVRKVFHQVRMKRLMWSNDGN 120
Query: 274 KAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYF 324
AG+ES LFL SIGLREYSR FF WVV+E Y
Sbjct: 121 HAGEESCTLFLCSIGLREYSR-------------------FFPWVVNEVYI 152
>gi|254465900|ref|ZP_05079311.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium Y4I]
gi|206686808|gb|EDZ47290.1| deoxyribodipyrimidine photolyase [Rhodobacterales bacterium Y4I]
Length = 474
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 153/435 (35%), Positives = 226/435 (51%), Gaps = 17/435 (3%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHS 59
MS R I W RRDLR+ DNPAL A +GA V+ V+I ++E G ++ L
Sbjct: 1 MSSRAPVIWWIRRDLRLCDNPALTAAAESGAPVLPVYILDEQDEAL---GAAPKFRLGLG 57
Query: 60 LSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
L H L G+ L+ +R ++ L ++++ TGA + ++ LYDP ++ RD K+ L
Sbjct: 58 LDHFGQELAKAGSCLILRRGK-ALRVLQDLIEETGAGAVHWSRLYDPQAIRRDSEIKQTL 116
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGD 179
QG+AV+S LL+EPW V G + + FW+ S D D+ L P +I + D
Sbjct: 117 KEQGVAVKSHGGRLLFEPWTVETKAGGMYKVYTPFWKAVRSR--DVDSLLPAPGKIAAPD 174
Query: 180 MSRCPSDTLVFEDESEKGSNA-LLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
D + + A ++AR G + A + L TF+ + Y R
Sbjct: 175 NWPASEDLADWRMAAAMRRGADVVARYCRVGETAALERLETFLEDSVDAYKARRDYPAED 234
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LS +L +GE+S +++H Q S A E G E FLK I RE++ ++ +
Sbjct: 235 ATSGLSENLAWGEISPHRMWH-----QGSAAMERGSQGAEH---FLKEIVWREFAYHLMY 286
Query: 299 NHPYSHERPLLGHLKFFSWVVD-EGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
N P+ + F W +AW++G TGY VDA MREL+ TG +H+R R++
Sbjct: 287 NSPHILTESWREEWQEFPWSQKITPQVQAWQRGLTGYGFVDAAMRELYVTGKMHNRARMI 346
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V+SF K L W+ GM +F DTL+D D S+ALGWQ+++G+ PD F R+ NP +
Sbjct: 347 VASFLTKHLMTHWKIGMDWFADTLVDWDPASNALGWQWVAGSGPDAAPFFRVFNPSGQLE 406
Query: 418 KFDPNGEYVRRWLPE 432
KFDP G Y RW+ E
Sbjct: 407 KFDPEGAYTSRWIAE 421
>gi|390167728|ref|ZP_10219708.1| deoxyribodipyrimidine photo-lyase [Sphingobium indicum B90A]
gi|389589593|gb|EIM67608.1| deoxyribodipyrimidine photo-lyase [Sphingobium indicum B90A]
Length = 458
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 150/441 (34%), Positives = 230/441 (52%), Gaps = 25/441 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
++WFR+DLR+ D ALAA V+ G VI +++ + + G SRWWL HSL LD L
Sbjct: 6 LLWFRQDLRLGDQAALAAAVQEGPVIPLYVLDDQAPRQWKMGGASRWWLHHSLRSLDDDL 65
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
R G+ LV R + V ++++ + TGA ++ H Y+P R E + + +
Sbjct: 66 RKKGSRLVL-RQGNCVDQIVQIAEETGARRVHALHHYEPWW-----RNAEKALGKRLDLC 119
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS-GDMSRCPSD 186
+ LL P V G + + F + + P P+ P RI++ G + S
Sbjct: 120 LHDGALLLPPGAVRTGGGNSYRIYTPF-ARAVMHHMPPAEPVRAPSRIDAPGQWPKGDSL 178
Query: 187 TLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPH 246
+ A +R W+PG + A + F++ +Y + R +S LSPH
Sbjct: 179 DRWGLLPTAPDWAAAFSRDWTPGEAGARANVDAFLD-EAADYDRARNLPSREGSSRLSPH 237
Query: 247 LHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP-YSHE 305
LHFGEVS +V+ +QV+ A GN FLK + R+Y+ + P Y E
Sbjct: 238 LHFGEVSPAQVW-----RQVAGA-PGN------ATTFLKELIWRDYAHTQIWAMPAYGSE 285
Query: 306 --RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
RP + + G F AW+ GRTGYP+VDAGMR+LW TGW+H+R+R++ +SF +
Sbjct: 286 NARPAFDAMPWRDLREAGGDFTAWKTGRTGYPIVDAGMRQLWTTGWMHNRVRMIAASFLI 345
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WR G ++FWDTL+DA ++++ WQ+++G+ D F RI P + KF+
Sbjct: 346 KHLLIDWRHGARWFWDTLVDASYANNSVNWQWVAGSGVDANIFSRIMAPLTQSEKFE-AA 404
Query: 424 EYVRRWLPELARLPTEWIHHP 444
Y+R+W+PELA L + IH P
Sbjct: 405 HYIRKWVPELAHLNDDVIHDP 425
>gi|126728554|ref|ZP_01744369.1| Deoxyribodipyrimidine photolyase [Sagittula stellata E-37]
gi|126710484|gb|EBA09535.1| Deoxyribodipyrimidine photolyase [Sagittula stellata E-37]
Length = 472
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 163/473 (34%), Positives = 232/473 (49%), Gaps = 36/473 (7%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
++VWFRRDLR+ D+ AL G VI VFI +G G +W L L +
Sbjct: 7 TLVWFRRDLRLSDHAALTEAASGGPVIPVFIRDALVDGL---GTAPQWRLGLGLKSFAEA 63
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L + G+ L+ RS +V L E+V TGA ++++ YDP S+ RD R KE L GI
Sbjct: 64 LEAKGSRLIL-RSGPAVEVLSELVNETGAKAVYWSRAYDPDSVDRDTRVKETLKGDGIDA 122
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEK--------CLSMPFDPDAPLLPPKRINSG 178
+SF LL+EPW V QG + + FW+ LS P D AP P
Sbjct: 123 QSFTGHLLFEPWTVETGQGGFYKVYTPFWKAVRGCDVPAALSSPSDLQAPATWPDGETLA 182
Query: 179 DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
D +G++ + G A L F+ + +Y+ R +
Sbjct: 183 DWE--------LGKGMRRGADVVRPYV-QLGEQAAQTRLGVFMRDKVADYATTRDEVSKD 233
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LS +L GE+S + +H A E K G E+ FLK + RE++ ++ +
Sbjct: 234 GTSCLSENLSLGEISPAQCWH-----AGCRAIEDGKPGAET---FLKELVWREFAYHLMW 285
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGY--FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
+ P + F W DE KAW+QGRTG P VDA MREL+ TG +H+R R+
Sbjct: 286 HTPRLLDGNWRQEWDGFPWKTDERLREVKAWKQGRTGIPFVDAAMRELYVTGRMHNRARM 345
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+V+S+ K L W+ GM +F D L+D D S+ALGWQ+ +G+ PD + R+ NP +
Sbjct: 346 IVASYLTKHLMCHWKIGMAWFEDCLIDWDPASNALGWQWSAGSGPDATPYFRVFNPVTQR 405
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNA-PESVLQAAGIELGSNYPFPIV 468
KFDP+ YV RW+ E + P++ ++A PES A G YP PIV
Sbjct: 406 EKFDPDCAYVTRWIAEGRKSPSDTALSYFDAIPESWPMAP----GDAYPDPIV 454
>gi|156744316|ref|YP_001434445.1| deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
13941]
gi|156235644|gb|ABU60427.1| Deoxyribodipyrimidine photo-lyase [Roseiflexus castenholzii DSM
13941]
Length = 487
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 146/478 (30%), Positives = 245/478 (51%), Gaps = 16/478 (3%)
Query: 8 IVWFRRDLRVEDNPAL-AAGVRA-GAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
I WFRRDLR+ DNPAL A +R+ G VI +FI G ++ +L LD+
Sbjct: 4 IHWFRRDLRLHDNPALHTASIRSDGRVIPLFILDDAILHAPRTGAARIAFMIAALRDLDA 63
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LR+ G+ LV +R ++ + +V+ TGAT + +N Y P + RD + + AL +
Sbjct: 64 NLRARGSRLVIRRGR-TLDVIRAMVQETGATGVAWNRDYTPFARRRDAQVEAALRDLNVE 122
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
+++ P DV G+P+ + + + ++ A +L R + R
Sbjct: 123 TSIAEDAVVFSPDDVRTGDGRPYTVYTPYRRRWRALTEQRRAEVL---RAIEPPLLRPAP 179
Query: 186 DTLVFEDESEKGSNALLARAWSP--GWSNADKALTTFIN----GPLIEYSKNRRKADSAT 239
+ + + + ++ P G ++ L F++ + Y++ R
Sbjct: 180 EAVADQTVPDHADLGIVVSQRIPPGGETHGAARLAAFVDLAAAHSIAGYAEGRDLLAEPA 239
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP+L FG V+ R+ ++ + + ++ S+ ++ + R++ + ++
Sbjct: 240 TSRLSPYLRFGCVAPRQALRAA-LRLLDIVGDDHRTV-RSIETWIGELAWRDFYYQILWH 297
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
+P+ R +W D F AW++GRTGYP++DA M +L W+H+R R++V+
Sbjct: 298 YPHVVRRSFKPQYDALAWENDPALFDAWKEGRTGYPIIDAAMHQLRQEAWMHNRARMIVA 357
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF K L + WRWG +YF L+D D ++ GWQ+ +GT D + + RI NP +G KF
Sbjct: 358 SFLTKDLLIDWRWGERYFMQQLVDGDHAANNGGWQWSAGTGTDAQPYFRIFNPVSQGQKF 417
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
DP G YVRR+LPELA++P +IH PW P + Q G+ +G +YP PIV D A+ R+
Sbjct: 418 DPKGLYVRRYLPELAQVPDRYIHAPWTMPRAEQQRCGVVIGRDYPAPIV--DHAERRM 473
>gi|332557576|ref|ZP_08411898.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N]
gi|332275288|gb|EGJ20603.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides WS8N]
Length = 471
Score = 229 bits (584), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 159/480 (33%), Positives = 239/480 (49%), Gaps = 37/480 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I+WFRRDLR+ DNP LA G +I +FI PE E G +W L + +
Sbjct: 8 ILWFRRDLRLADNPMLAEAAATGRPLIPLFILDPETEAL---GAAPKWRLGLGVEAFARA 64
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L LG+ LV +R +++ L +V TGA + ++ L++P RD K L GI
Sbjct: 65 LEGLGSRLVLRRGP-ALAVLEALVAETGAAGVHWSRLWEPAWRARDEGVKAGLRQAGIEA 123
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMP----FDPDAPLLPP------KRIN 176
S ++EPW+V QG + + FW+ P F P A L P +R+
Sbjct: 124 ASHAGHTIFEPWEVETGQGGFYRVYTPFWKAVKDRPVAASFPPPARLPSPAEWPVSERLA 183
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
S D+ R +G+ A++A + G + A + LT F++GPL Y+ R + D
Sbjct: 184 SWDLGRA----------MNRGA-AVVAPHLAVGEAAAAERLTRFMSGPLDRYAAERDRPD 232
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
+ TS LS +L +GE+S R ++H + +AG E FL+ + RE+ ++
Sbjct: 233 APVTSRLSENLTYGEISARSLWHAGMRARAE-----GRAGAEK---FLQELAWREFGWHL 284
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
++ P R G F W D + WR+G TG P VDA MREL+ TG +H+R R+
Sbjct: 285 LYHTPEIARRNWRGDWDAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARL 344
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+ S+ K L WR G +F D L+D D S+ALGWQ+++G+ PD + RI NP +
Sbjct: 345 IAGSYLTKHLLTDWRVGKAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQA 404
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFDP Y +R+L E+AR P E+V ++ G+ YP P+V + + R
Sbjct: 405 EKFDPESAYRQRFLAEIARRPGP---EALAFLEAVPRSWGLRPDRCYPRPVVGLAEGRER 461
>gi|99081282|ref|YP_613436.1| deoxyribodipyrimidine photo-lyase type I [Ruegeria sp. TM1040]
gi|99037562|gb|ABF64174.1| Deoxyribodipyrimidine photo-lyase type I [Ruegeria sp. TM1040]
Length = 474
Score = 229 bits (584), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 150/454 (33%), Positives = 228/454 (50%), Gaps = 33/454 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I W RRDLR+ DNPAL A AG +I ++I +EE G ++ L L +
Sbjct: 8 IWWIRRDLRLRDNPALRAAQEAGGPIIPLYIHDAQEEAL---GAAPKFRLGLGLERFAKT 64
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L G+ L+ +R D++ L EV+ +GA + ++ LYDP + RD + KEAL A I
Sbjct: 65 LEEKGSRLIVRRG-DALEVLREVIAESGAGHVIWSRLYDPAATKRDAKIKEALKASDIKA 123
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
+S LL+EPW V+ G + + FW+ + D P R+ + + PS
Sbjct: 124 KSTGGRLLFEPWTVDTKDGGMYRVYTPFWKAVRTR--DVAELTAAPSRLAAPE--SWPSG 179
Query: 187 TLVFE---DESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
+ + D + + A++A+ G A L F+ + Y +R A TS L
Sbjct: 180 EALADLGMDAAMRRGGAIVAQHCRVGEDAALAQLDDFLTERVSNYKAHRDFPARAATSEL 239
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
S +L +GE+S +++HL + + G FLK + RE++ ++ P
Sbjct: 240 SENLAWGEISPHRMWHL--------GAQAMQDGQPGAEHFLKEVVWREFAYHLMHRSPRI 291
Query: 304 HERPLLGHLKFFSWVVDEG-YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
R F W D G + W+QG+TGY VDA MREL+ TG +H+R R++V+SF
Sbjct: 292 LTRNWREEWDGFPWQDDPGDALQRWQQGQTGYDFVDAAMRELYVTGKMHNRARMIVASFL 351
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
K L + W++G+++F D L+D D S+A+GWQ+++G+ PD F RI NP + KFDP
Sbjct: 352 TKHLMIHWKYGLQWFEDCLVDWDPASNAMGWQWVAGSGPDAAPFFRIFNPDGQLEKFDPK 411
Query: 423 GEYVRRWLPE------------LARLPTEWIHHP 444
G+Y RRWLPE +P W HP
Sbjct: 412 GDYARRWLPEGQANPPETAMAYFEAIPRRWSLHP 445
>gi|259506660|ref|ZP_05749562.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314]
gi|259165744|gb|EEW50298.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314]
Length = 476
Score = 229 bits (583), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 159/456 (34%), Positives = 223/456 (48%), Gaps = 34/456 (7%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
+S +IVWFR DLR+ DN ALA G VI +FI +E+ P G +RWW SL
Sbjct: 3 LSTASPTIVWFRDDLRIRDNAALAWAADRGPVIGLFI---DEDQPRALGGAARWWRDRSL 59
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+ L +L + G L+ +RS D V L EVV+ TGA + +N Y RD K L
Sbjct: 60 TLLVDALATHGVPLL-RRSGDPVVLLTEVVRETGAAAVTWNRRYHGPLRERDAEIKTQLR 118
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
QG+ V S LL EPW+V G + + F + + + A L P
Sbjct: 119 EQGLEVHSHAGFLLTEPWEVTSGAGTGYKVYTPFSKAAFPLADESAARLGDPMPAQLTGP 178
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIE--YSKNRRKADSA 238
+DT D + A +A PG A L F++ Y+ R + A
Sbjct: 179 DTPVADTGGI-DAPDPFWAAEMATHCRPGEQAALDRLGDFLDRMRERGGYADGRDEMARA 237
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LSPHL FGE+SV +V+ ++++ A + +F K + R+++ + +
Sbjct: 238 VTSGLSPHLRFGEISVHRVW-----EEITAAADAGDIDATDAQVFRKELLWRDFAWHRLY 292
Query: 299 NHPYSHERPLLGHLKFFSWVVDEG----------------------YFKAWRQGRTGYPL 336
P + F W DE AWR GRTG PL
Sbjct: 293 ALPDMATTNVREQFNRFGWAWDEHEAARLVDGRHPLSPTSSDEFHVALAAWRAGRTGIPL 352
Query: 337 VDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYI 396
VDAGMRELWATG +H+R R+VV+SF K LQ+ WR G ++FW+TL+DAD S+A WQ+
Sbjct: 353 VDAGMRELWATGSMHNRSRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWA 412
Query: 397 SGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPE 432
+G+ D + RI NP+ + KFDP+ Y+RRW+PE
Sbjct: 413 AGSGDDASPYFRIFNPETQARKFDPDETYIRRWIPE 448
>gi|25027203|ref|NP_737257.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314]
gi|23492484|dbj|BAC17457.1| deoxyribodipyrimidine photolyase [Corynebacterium efficiens YS-314]
Length = 492
Score = 229 bits (583), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 159/456 (34%), Positives = 223/456 (48%), Gaps = 34/456 (7%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
+S +IVWFR DLR+ DN ALA G VI +FI +E+ P G +RWW SL
Sbjct: 19 LSTASPTIVWFRDDLRIRDNAALAWAADRGPVIGLFI---DEDQPRALGGAARWWRDRSL 75
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+ L +L + G L+ +RS D V L EVV+ TGA + +N Y RD K L
Sbjct: 76 TLLVDALATHGVPLL-RRSGDPVVLLTEVVRETGAAAVTWNRRYHGPLRERDAEIKTQLR 134
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
QG+ V S LL EPW+V G + + F + + + A L P
Sbjct: 135 EQGLEVHSHAGFLLTEPWEVTSGAGTGYKVYTPFSKAAFPLADESAARLGDPMPAQLTGP 194
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIE--YSKNRRKADSA 238
+DT D + A +A PG A L F++ Y+ R + A
Sbjct: 195 DTPVADTGGI-DAPDPFWAAEMATHCRPGEQAALDRLGDFLDRMRERGGYADGRDEMARA 253
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LSPHL FGE+SV +V+ ++++ A + +F K + R+++ + +
Sbjct: 254 VTSGLSPHLRFGEISVHRVW-----EEITAAADAGDIDATDAQVFRKELLWRDFAWHRLY 308
Query: 299 NHPYSHERPLLGHLKFFSWVVDEG----------------------YFKAWRQGRTGYPL 336
P + F W DE AWR GRTG PL
Sbjct: 309 ALPDMATTNVREQFNRFGWAWDEHEAARLVDGRHPLSPTSSDEFHVALAAWRAGRTGIPL 368
Query: 337 VDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYI 396
VDAGMRELWATG +H+R R+VV+SF K LQ+ WR G ++FW+TL+DAD S+A WQ+
Sbjct: 369 VDAGMRELWATGSMHNRSRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQWA 428
Query: 397 SGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPE 432
+G+ D + RI NP+ + KFDP+ Y+RRW+PE
Sbjct: 429 AGSGDDASPYFRIFNPETQARKFDPDETYIRRWIPE 464
>gi|440229885|ref|YP_007343678.1| deoxyribodipyrimidine photolyase [Serratia marcescens FGI94]
gi|440051590|gb|AGB81493.1| deoxyribodipyrimidine photolyase [Serratia marcescens FGI94]
Length = 476
Score = 229 bits (583), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 153/467 (32%), Positives = 229/467 (49%), Gaps = 22/467 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VW R DLR+ DN AL A R V+A+FI P++ + ++ +L L S
Sbjct: 5 LVWLRNDLRITDNKALYAACRDPQAQVVALFIATPQQWRRHEMAPRQAAFIYANLLQLRS 64
Query: 66 SLRSLGTSLVTKRSTDSVSS---LLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L G LV ++ D ++ L + +ATG LF+N Y+ RD + + AL A+
Sbjct: 65 QLAQRGIPLVVQQCDDFAAAARWLTDYCRATGVDALFYNRQYELNERRRDRQVESAL-AE 123
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
+ +F+ LL P V G+ + F F + L D LP + +G
Sbjct: 124 TLTCHAFDDALLLPPGSVQTGSGEMYQVFTPFRKAFLQRLLSVDVHSLPAPSVRAGGAIA 183
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
P+ E +A A+ PG +A + L F + +Y + R TS
Sbjct: 184 EPA-----APEPFAYPDAEWDAAFPPGEEHALRRLRAFCREQVEDYRQQRDFPALDATSG 238
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP- 301
LSP+L G +S R+ F+ +R+ + + +L + RE+ R++ HP
Sbjct: 239 LSPYLALGVLSPRQCFNRLRLTCPDLLTQP----ESGAFTWLNELIWREFYRHLLVAHPA 294
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
RP +G W D +AW+QGRTGYP+VDA MR+L TGW+H+R+R++V+SF
Sbjct: 295 LCRHRPFIGWTDAVRWNPDAEALQAWQQGRTGYPIVDAAMRQLNHTGWMHNRLRMIVASF 354
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L + WR G +YF LLD D ++ GWQ+ + T D + RI NP +G +FDP
Sbjct: 355 LVKDLLIDWRAGERYFMRQLLDGDFAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDP 414
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
G ++R+WLPELA +P +HHP E G+ L YP PIV
Sbjct: 415 QGAFIRKWLPELADVPDNELHHPHRWAEQ----QGVALA--YPPPIV 455
>gi|163849034|ref|YP_001637078.1| deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222527000|ref|YP_002571471.1| deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
gi|163670323|gb|ABY36689.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus aurantiacus
J-10-fl]
gi|222450879|gb|ACM55145.1| Deoxyribodipyrimidine photo-lyase [Chloroflexus sp. Y-400-fl]
Length = 479
Score = 229 bits (583), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 153/469 (32%), Positives = 236/469 (50%), Gaps = 28/469 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA--VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
I WFRRDLR+ DN AL A A V+ VFI+ + +L L+ LD+
Sbjct: 3 IHWFRRDLRLRDNTALMAAATAAGGAVVPVFIFDDAILRGRFASPARTQFLLDCLAALDA 62
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
LR+ G LV +R D + +L +V++ +GA+ + +N Y P ++ RD K+AL G
Sbjct: 63 ELRTFGLHLVVRRG-DPLRTLFDVLRESGASGVTWNRDYTPYAVRRDTAIKQALREAGYE 121
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
SF +++E +V A G+P+ + + ++ S L + + DM R +
Sbjct: 122 AHSFKDTVIFEMKEVATADGRPYTVYTPYAKRWRSR--------LAAEPVTVQDMPRLAT 173
Query: 186 DTLVFEDESEKGSNAL------LARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
L + ++ L L R + G + A +AL F+ GPL Y++ R A
Sbjct: 174 IPLPVSEPLPHLTDLLPDAPATLPR-FPAGEAVALEALERFVRGPLASYAQGRDLMAVAG 232
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LSP+L G +S R+ E ++ + R++ + ++
Sbjct: 233 TSRLSPYLRLGVLSPRQCVAAALAAPPGPGPES----------WIGELIWRDFYVQVLYH 282
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P++ W D F AW+QG TGYP+VDA MR+L GW+H+R R++V+
Sbjct: 283 FPHALRGSFKPAYNRIDWPNDPVLFAAWQQGLTGYPIVDAAMRQLQREGWMHNRARMIVA 342
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF K L + WRWG ++F L+D D ++ GWQ+ +GT D + F RI NP +G KF
Sbjct: 343 SFLTKDLLIDWRWGERHFMHLLIDGDPAANNGGWQWAAGTGTDAQPFFRIFNPVSQGQKF 402
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
DP G YVRR++PEL +PT +IH P + + AG+ +G +YP PIV
Sbjct: 403 DPEGAYVRRYVPELVNVPTRYIHEPHKMSLAEQRKAGVLIGRDYPAPIV 451
>gi|84502965|ref|ZP_01001067.1| deoxyribodipyrimidine photolyase [Oceanicola batsensis HTCC2597]
gi|84388710|gb|EAQ01581.1| deoxyribodipyrimidine photolyase [Oceanicola batsensis HTCC2597]
Length = 472
Score = 229 bits (583), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 153/478 (32%), Positives = 241/478 (50%), Gaps = 32/478 (6%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+++WFRRDLR+ D+PAL G VI VFI ++ G +W L L+ +
Sbjct: 8 TLLWFRRDLRLSDHPALTQAAARGPVIPVFI---HDDSVAGLGAAPKWRLGEGLAVFRDA 64
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L G L+ +R + L ++ TGAT +++ YDP ++ RD R K AL +G
Sbjct: 65 LAERGARLILRRGP-AREVLERLIDETGATAVYWTRAYDPDAIERDSRVKAALADRGTEA 123
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS- 185
SF L++EPW+V QG+ + ++ +W + D PL P D+S PS
Sbjct: 124 CSFPGHLIFEPWEVETQQGKMYQVYSPYWRAVKDR--EVDRPLRAP------DLS-APSK 174
Query: 186 --DTLVFED-ESEKGSN---ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
D+ ED G N A++AR +PG A L F L +Y + R
Sbjct: 175 WPDSEALEDWHLGAGMNRGAAIVARHCTPGEGAAQSRLGAFSAQRLEDYKERRDMPAEDA 234
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS +S +L GE+S R+++H A G G F K + RE++ ++ ++
Sbjct: 235 TSDMSQYLTLGEISPRQLWHA--------ALRGEAEGKSGAEHFRKEVVWREFAYHLMYH 286
Query: 300 HPYSHERPLLGHLKFFSWVV-DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
P + + F W D + W+QGRTG VDA MRE++ TG +H+R R+VV
Sbjct: 287 TPRLLDENWREGWEAFCWSEEDSEAVRRWKQGRTGVRFVDAAMREMYVTGRMHNRSRMVV 346
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+S+ K + + WR G K+F D L+D D S+++GWQ+++G PD + R+ NP + K
Sbjct: 347 ASYLTKHMLVHWRIGQKWFQDCLIDWDPASNSMGWQWVAGCGPDASPYFRVFNPDTQLEK 406
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
FD +G YV RWL E +R P++ ++A + ++ G+ +YP P+V + + R
Sbjct: 407 FDRDGRYVARWLAECSRSPSDTALSYFDA---IPESWGLSPEDDYPEPVVDLKEGRRR 461
>gi|319993041|emb|CBY94069.1| cryptochrome [Fagus sylvatica]
Length = 126
Score = 228 bits (582), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 109/126 (86%), Positives = 114/126 (90%)
Query: 404 RAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNY 463
R FDRIDNPQF+GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVL AAGIELGSNY
Sbjct: 1 REFDRIDNPQFQGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLHAAGIELGSNY 60
Query: 464 PFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLGDSSDSAPIAFPPDIQMEEI 523
P PIV IDAAK RL +ALSEMWQQEAASRAAIENGTEEGLGDS++S PIAFP DIQM E
Sbjct: 61 PLPIVEIDAAKARLQQALSEMWQQEAASRAAIENGTEEGLGDSAESTPIAFPQDIQMAEN 120
Query: 524 PEPARN 529
EP R+
Sbjct: 121 HEPVRD 126
>gi|346992466|ref|ZP_08860538.1| deoxyribodipyrimidine photo-lyase [Ruegeria sp. TW15]
Length = 477
Score = 228 bits (581), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 147/482 (30%), Positives = 243/482 (50%), Gaps = 22/482 (4%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLS 61
G I+WFRRDLR+ D PAL A VR+G ++ VFI + + G +W L L
Sbjct: 4 GHSPIILWFRRDLRLRDYPALTAAVRSGRPIVPVFILDDQVQAL---GAAPKWRLGLGLE 60
Query: 62 HLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTA 121
+L +G++L+ +R T ++ L +++ TGA +F++ YDP ++ RD K +L
Sbjct: 61 AFAKALDQIGSNLILRRGT-ALRVLKDLIHETGAGAVFWSRAYDPKAINRDKHIKASLNE 119
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMS 181
QGI VRSF LL+EPW + GQPF F W D P P RI D+
Sbjct: 120 QGIEVRSFAGHLLFEPWTIATKAGQPFRVFTPMWRSVSGR--DVAMPEPTPARIAKPDLW 177
Query: 182 RCPSDTLVFEDESEKGSNALLARAW-SPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
+ + + A + R + PG + A L F+ + Y + R + D T
Sbjct: 178 PASDRLSDWNLDRDMQRGATIVRPFVRPGEAAALDQLDRFLEN-IDHYQEARDRLDQVGT 236
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LS +L GE+ R ++H V+ ++ G FL+ + RE++ ++ ++
Sbjct: 237 SDLSEYLSLGEIGPRTIWHRVQ--------NADRTGSRGGEAFLRQLVWREFAYHLMYHW 288
Query: 301 PYSHERPLLGHLKFFSWVVDEGY--FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
P+ F W D +AW+ RTG PLVDAG+R+++ TG +H+R R++V
Sbjct: 289 PHLLTDNWKPEWDAFPWNTDPDTPEVRAWKLARTGVPLVDAGLRQMYVTGRMHNRARMIV 348
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+S+ K L W+ G +F + L+D D ++A+GWQ+++G PD + RI NP+ + +
Sbjct: 349 ASYLTKHLMTHWKIGADWFAECLIDWDPAANAMGWQWVAGCGPDAAPYFRIFNPETQRER 408
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FDP+ Y++RW+ E P+ ++A + ++ G+ +Y P+V + + R
Sbjct: 409 FDPHSTYLKRWIAEGRSDPSPTARAYFSA---IPRSWGLSHEDSYGAPVVGLKEGRIRAL 465
Query: 479 EA 480
+A
Sbjct: 466 DA 467
>gi|296283766|ref|ZP_06861764.1| deoxyribodipyrimidine photolyase [Citromicrobium bathyomarinum
JL354]
Length = 467
Score = 228 bits (581), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 159/445 (35%), Positives = 230/445 (51%), Gaps = 24/445 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IVW RRDLR+ DNPAL A +AG +I VF+ E G G SRWWL HSL L S
Sbjct: 6 IVWLRRDLRLADNPALYAAAQAGPIIPVFVLDDERTGDRKYGDASRWWLHHSLESLARSF 65
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
SL+ +R DSV+ L ++ TGA+ + N Y+P K+AL +G +
Sbjct: 66 GRHNASLILRRG-DSVNILADLAAKTGASAIHANRHYEPWWRKAQGDLKKALP-EGCDLE 123
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS-GDMSRCPSD 186
+ + L G P+ + F + + P L P+ I+ GD+ PSD
Sbjct: 124 LHDGNYLMPLGTATTGSGDPYKIYTPF-SRTMRDLMPPRDDLPAPETISQPGDLP--PSD 180
Query: 187 TLVFEDESEKGSN----ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
L D S +N +A+ WS G A + L + + + EY + R TS
Sbjct: 181 DLA--DWSLLPTNPDWSTEMAKFWSIGEDAAHERLDWWADH-VGEYDEGRNLPSVDQTSQ 237
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVS-WANEGNKA--GDESVNLFLKSIGLREYSRYMSFN 299
+SPHLH+GE+S +++H ++ K+ W ++ D + N+ + E S + +
Sbjct: 238 MSPHLHWGEISPVQIWHRMKDKRSDGWRTYESELIWRDYAQNVLCQFPRYPEESYRDAID 297
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P GH V+ E +AW+ GRTGYP+VDAGMR+LWA GW+H+R+R++ +
Sbjct: 298 DAKLWRNPNRGH------VIQEE-LEAWQYGRTGYPIVDAGMRQLWAIGWMHNRVRMIAA 350
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF +K L + WR G ++FWDTL+DAD S+ WQ+++GT D F RI P + KF
Sbjct: 351 SFLIKHLLIDWRHGERWFWDTLVDADYASNGTNWQWVAGTGVDSNMFPRIMAPLSQSEKF 410
Query: 420 DPNGEYVRRWLPELARLPTEWIHHP 444
D Y+R W+PELA LP IH P
Sbjct: 411 D-AASYIREWVPELADLPDSEIHDP 434
>gi|294011743|ref|YP_003545203.1| deoxyribodipyrimidine photo-lyase [Sphingobium japonicum UT26S]
gi|292675073|dbj|BAI96591.1| deoxyribodipyrimidine photo-lyase [Sphingobium japonicum UT26S]
Length = 500
Score = 228 bits (581), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 150/442 (33%), Positives = 230/442 (52%), Gaps = 27/442 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
++WFR+DLR+ D AL A V+ G VI +++ + + G SRWWL HSL LD L
Sbjct: 38 LLWFRQDLRLADQAALGAAVQEGPVIPLYVLDDQAPRQWKMGGASRWWLHHSLRSLDDDL 97
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
R G+ LV R + V ++++ + TGA ++ H Y+P R E + + +
Sbjct: 98 RKKGSRLVL-RQGNCVDQIVQIAEETGARRVHALHHYEPWW-----RNAEKALGKRLDLC 151
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS-MPFDPDAPLLPPKRINS-GDMSRCPS 185
+ LL P V G + + F + MP P P+ P RI++ G + S
Sbjct: 152 LHDGALLLPPGAVRTGGGNSYRIYTPFARAVMDHMP--PAEPVRAPSRIDAPGQWPKGDS 209
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
+ A +R W+PG + A + F++ +Y + R +S LSP
Sbjct: 210 LDRWGLLPTAPDWAAAFSRDWTPGEAGARANVAAFLD-EAADYDRARNLPSREGSSRLSP 268
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP-YSH 304
HLHFGEVS +V+ +QV+ A GN FLK + R+Y+ + P Y
Sbjct: 269 HLHFGEVSPAQVW-----RQVAGA-PGN------ATTFLKELIWRDYAHTQIWAMPAYGS 316
Query: 305 E--RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
E RP + + F AW+ GRTGYP+VDAGMR+LW TGW+H+R+R++ +SF
Sbjct: 317 ENARPAFDAMPWRDLREAGVDFTAWKTGRTGYPIVDAGMRQLWTTGWMHNRVRMIAASFL 376
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
+K L + WR G ++FWDTL+DA ++++ WQ+++G+ D F RI P + KF+
Sbjct: 377 IKHLLIDWRHGARWFWDTLVDASYANNSVNWQWVAGSGVDANIFSRIMAPLTQSEKFEA- 435
Query: 423 GEYVRRWLPELARLPTEWIHHP 444
+Y+R+W+PELA L + IH P
Sbjct: 436 ADYIRKWVPELAHLNDDVIHDP 457
>gi|34498936|ref|NP_903151.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC
12472]
gi|34104785|gb|AAQ61142.1| deoxyribodipyrimidine photo-lyase [Chromobacterium violaceum ATCC
12472]
Length = 471
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 154/469 (32%), Positives = 236/469 (50%), Gaps = 25/469 (5%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPEEEG--PYYPGRVSRWWLKHSLSH 62
++VW RRDLR++D+ A ++ + AV+ VF++ P RV W S +
Sbjct: 7 TALVWLRRDLRLDDHAAFYHALKHSEAVLPVFVFDASILAALPRDDRRVDFIW--QSAAA 64
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L + L LG L+ + + + GA +F N Y+P + RD + L Q
Sbjct: 65 LKAELNQLGGDLLIRHGLPQ-HEIPRLAAELGAEAVFCNRDYEPAARARDAEVAQRLAEQ 123
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSMPFDPDAPLLPPKRINSGD 179
G+A R +++E +V G+PF+ F + W K L+ PF A P +R
Sbjct: 124 GVAFRDSKDQVIFETDEVLTGAGKPFSVFTPYKNAWLKKLT-PFHLQA--YPVRRYLDAL 180
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
M R P D S+ L + G + A+ F G + Y R
Sbjct: 181 MPREPQSMPSLADIGFLPSD-LASLPVKAGAAGAEALFADF-AGRIERYKAQRDFPGVKG 238
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
S+LS HL FG +S+R R+ +W + G E +L + R++ + + ++
Sbjct: 239 VSYLSVHLRFGTLSIR------RLAAYAWHD-----GGEGAMTWLSELIWRDFYQQVLWH 287
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P + + + D +F AWR+GRTGYPLVDA MR+L +G++H+R+R+V +
Sbjct: 288 RPDAAKHAFKPEYDALPFPNDPEWFDAWREGRTGYPLVDAAMRQLNRSGYMHNRLRMVAA 347
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L + WRWG +YF + LLD DL ++ GWQ+ + T D + + RI NP + KF
Sbjct: 348 SFLVKDLLIDWRWGEQYFAEKLLDFDLAANNGGWQWAASTGCDAQPYFRIFNPVSQSEKF 407
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
DP+G ++RR++PELA LP + IH PW A L +AG+ LG +YP PIV
Sbjct: 408 DPDGRFIRRYVPELAALPDKLIHAPWQAKPEQLMSAGVRLGRDYPHPIV 456
>gi|227502618|ref|ZP_03932667.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
accolens ATCC 49725]
gi|227076658|gb|EEI14621.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
accolens ATCC 49725]
Length = 445
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 153/446 (34%), Positives = 221/446 (49%), Gaps = 38/446 (8%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA--------VIAVFIWAPEEEGPYYP-----GRVS 52
S++WFR DLR+ DN AL A ++AV + + P YP G +
Sbjct: 2 TSLMWFRDDLRLSDNQALTRAAEAATDKNGSKPELVAVVL-----DEPAYPSTRPLGGAT 56
Query: 53 RWWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYD-PLSLVR 111
WW + SL L L S G L+ + + D+ + + + GA + +N Y PL V
Sbjct: 57 HWWRERSLHALAQELASRGVKLL-RATGDARTVIPRIAHEVGADTVTWNRRYHGPLREV- 114
Query: 112 DHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLP 171
D R K L GI S L EPW+V +AQG P+ F F S D + PL
Sbjct: 115 DARVKATLADAGINAISCPGFTLVEPWEVTNAQGNPYKVFTPFAAAARSQLAD-EEPLPV 173
Query: 172 PKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKN 231
P+ + +M S + E A LA+ W+PG + A + L L Y++
Sbjct: 174 PELLAGREMGASASSSWPNPSADEPQWAASLAQYWTPGEAGARERLAQL---DLAHYAEE 230
Query: 232 RRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLRE 291
R TS LSPHL FGEVS R+V+ V+ A E + F + R+
Sbjct: 231 RDIPARNATSLLSPHLRFGEVSPREVW-------VAAAEEPD------AEKFQSELLWRD 277
Query: 292 YSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLH 351
++ + ++ P R + F W ++ K W++G TG PLVDAGMRELW TG++H
Sbjct: 278 FAWHRLYHLPDLATRNVRQKFNRFDWSWNDPRLKDWQEGTTGIPLVDAGMRELWHTGYMH 337
Query: 352 DRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDN 411
+R+R+VV SF K L + WR G ++FWDTL+DAD S+ WQ+++G D F RI N
Sbjct: 338 NRVRMVVGSFLTKNLGIHWRLGEEWFWDTLVDADAASNPFNWQWVAGCGDDAAPFFRIFN 397
Query: 412 PQFEGYKFDPNGEYVRRWLPELARLP 437
P+ + +FDP+G Y+R+W P L+ P
Sbjct: 398 PETQAQRFDPDGAYIRQWAPTLSAPP 423
>gi|87199776|ref|YP_497033.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium
aromaticivorans DSM 12444]
gi|87135457|gb|ABD26199.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium
aromaticivorans DSM 12444]
Length = 454
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 169/488 (34%), Positives = 228/488 (46%), Gaps = 50/488 (10%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IVWFRRDLR+ D AL A G VI V+I + G SRWWL HSL+ LD+SL
Sbjct: 6 IVWFRRDLRLADQAALLAAAAEGPVIPVYILDDDTPRHCRMGGASRWWLHHSLAELDASL 65
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
R LG+ L+ +R L V + GA + Y+P R E A+ I +
Sbjct: 66 RKLGSRLILRRGK-CHEELAAVRREAGARVVHALQHYEPWW-----RNAEKAVAKTIRLV 119
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDP---------DAPLLPPKRINSG 178
+ L V G+P+ + FW L +AP + P
Sbjct: 120 LHEGNYLAPAGSVRTGMGRPYKIYTPFWHALLERMPPAPPLPAPERLEAPAVWPTSDALD 179
Query: 179 DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
D P+ W+PG + A++ L F + + Y + R
Sbjct: 180 DWKLLPT---------APDWAGGFRETWTPGENGAEERLQDFADR-VARYGETRNLPSIE 229
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LSPHLHFGE+S ++H V N G SV++FL +G R+Y++ +
Sbjct: 230 GTSRLSPHLHFGEISPATIWHRV-------VNAGG-----SVDVFLGELGWRDYAQNVIV 277
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
P R W D +AW+QGRTGYP+VDAGMRELW TGW+H+R+R++
Sbjct: 278 QFPDYGSRNAREAYDRLEWRDDPEALRAWQQGRTGYPIVDAGMRELWHTGWMHNRVRMIA 337
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L + WR G ++FWDTL+DAD S+A+ WQ+ +GT D F RI P + K
Sbjct: 338 ASFLVKHLLIDWREGERWFWDTLVDADYASNAVNWQWTAGTGVDSNMFVRIMAPLTQSPK 397
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
FD G Y+R+W+PELA L IH P P YP IV A+ R
Sbjct: 398 FDAAG-YIRQWVPELAHLSDRDIHDPAVPPR------------GYPAKIVSHSEARARAL 444
Query: 479 EALSEMWQ 486
A M Q
Sbjct: 445 AAHDRMKQ 452
>gi|428220832|ref|YP_007105002.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 7502]
gi|427994172|gb|AFY72867.1| deoxyribodipyrimidine photolyase [Synechococcus sp. PCC 7502]
Length = 481
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 157/479 (32%), Positives = 239/479 (49%), Gaps = 36/479 (7%)
Query: 7 SIVWFRRDLRVEDNPALA--AGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
SIVW RRDLR++DNPALA A + + +FI+ P+ G ++ L L
Sbjct: 5 SIVWHRRDLRLQDNPALAKAAVIPNSETVGIFIFDPDILKSPETGGGKVDFMLGCLKELQ 64
Query: 65 SSLRSLGTSLVT--KRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
S R LG+ L+ + ++ L +V+K +LFFN +P ++ RD + L+A
Sbjct: 65 QSYRELGSELLCFYGNPKEVLAKLAQVLKPQ---RLFFNQDVEPSAIKRDQAVIQELSAI 121
Query: 123 GIAVRSFNADLLYEPWDV-NDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI----NS 177
GI V+ F L+ P + + G+P+ ++ FW+ ++ P +PL P+++ N
Sbjct: 122 GIEVKGFLDIALHAPQAIATKSTGEPYKVYSPFWKNWITQP--KPSPLPKPQKLLGLKNC 179
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFING-PLIEYSKNRRKAD 236
+ P +L E N + + G A K LT F + L Y K+R
Sbjct: 180 DGLDAIPLPSLA---ELGFSHNQTIP---ASGEEIAQKLLTEFCDSQKLYNYKKDRDFPA 233
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQV-------SWANEGNKAGDESVNLFLKSIGL 289
TS LSPHL FG + +R + + S ++ N E + + + +
Sbjct: 234 IDGTSNLSPHLRFGTIGIRDCWAATVAVMIDAEADITSEQDQRNAQKLEGIQTWRQELAW 293
Query: 290 REYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGW 349
RE+ +++ F+ P + ++ F+W + YF+AW GRTGYP+VDA MR+L TGW
Sbjct: 294 REFYQHVLFHFPQLSQSAYRPQMQRFAWDQNHEYFQAWSNGRTGYPIVDAAMRQLNQTGW 353
Query: 350 LHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRI 409
+H+R R++V+SF K L L W+WG YF L+D DL ++ GWQ+ + + D + RI
Sbjct: 354 MHNRCRMIVASFLTKDLILNWQWGELYFMQKLIDGDLAANNGGWQWSASSGMDTQPL-RI 412
Query: 410 DNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
NP + KFDP G Y+RRWLPEL L T + N LQ SNYP PIV
Sbjct: 413 FNPSSQALKFDPEGTYIRRWLPELVHLTTAELLSG-NISNYQLQK------SNYPAPIV 464
>gi|73540409|ref|YP_294929.1| deoxyribodipyrimidine photo-lyase type I [Ralstonia eutropha
JMP134]
gi|72117822|gb|AAZ60085.1| deoxyribodipyrimidine photo-lyase type I [Ralstonia eutropha
JMP134]
Length = 525
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 157/488 (32%), Positives = 247/488 (50%), Gaps = 36/488 (7%)
Query: 7 SIVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPEEEGPYY----PGRVSRWWLKHSLS 61
+VWFRRDLR D+ AL ++ V VF++ + P G +++ SL
Sbjct: 36 GLVWFRRDLRSTDHAALHYALKHCREVWCVFVFDRDILDPLLARGLKGDRRVDFIRASLI 95
Query: 62 HLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTA 121
LD++LR+ G L+ + + S++ + + G +F NH Y+P ++ RD +++L
Sbjct: 96 ELDATLRAAGGGLIVMNDS-AASAIPALARELGVQAVFANHDYEPDAVARDAAVRDSLAG 154
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSMPFD----PDAPLLPPKR 174
+ +F +++E ++ +QG+PFA F + W K + PFD P P L
Sbjct: 155 DARVLFTFKDQVIFERDEILTSQGKPFAVFTPYKNAWLKTIQ-PFDLRPYPIEPYLHA-- 211
Query: 175 INSGDMSRCPSDTLV----FEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSK 230
++ PS LV ED SN LA P S+ +AL + +Y +
Sbjct: 212 -----LAPLPSKRLVPLPSLEDLGFAPSN--LAEVAMPTGSSGGQALFEEFTSRMGDYGR 264
Query: 231 NRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLR 290
R S+LS HL FG VS+R L R + G A +L + R
Sbjct: 265 RRDYPALRGPSYLSVHLRFGTVSIRT---LARAAHGAVLRGG--ADSAGAATWLSELVWR 319
Query: 291 EYSRYMSFNHPYSHE----RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWA 346
++ + +HP P +++ + YF++WR TGYPLVDA M ++
Sbjct: 320 DFYFMILHHHPRVAAGEAFHPAYDIIRWRDGETGDRYFESWRDAATGYPLVDAAMLQIRQ 379
Query: 347 TGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAF 406
+G++H+R+R+V +SF VK L + WR G YF D L D D ++ GWQ+ + T D + +
Sbjct: 380 SGYMHNRLRMVTASFLVKDLGVDWRRGEHYFADQLNDFDFAANNGGWQWAASTGCDAQPW 439
Query: 407 DRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFP 466
RI NP + KFDP G ++R++LP+LA LP +++H PW AP+ VL AAG+ LG NYP P
Sbjct: 440 FRIFNPVTQSEKFDPQGRFIRKYLPQLAALPDKYVHAPWTAPQDVLLAAGVRLGENYPRP 499
Query: 467 IVRIDAAK 474
+V+ D A+
Sbjct: 500 LVQHDVAR 507
>gi|306835185|ref|ZP_07468221.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
accolens ATCC 49726]
gi|304568940|gb|EFM44469.1| possible deoxyribodipyrimidine photo-lyase [Corynebacterium
accolens ATCC 49726]
Length = 445
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 153/446 (34%), Positives = 221/446 (49%), Gaps = 38/446 (8%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA--------VIAVFIWAPEEEGPYYP-----GRVS 52
S++WFR DLR+ DN AL A ++AV + + P YP G +
Sbjct: 2 TSLMWFRDDLRLSDNQALTRAAEAATDKNGSKPELVAVVL-----DEPAYPSTRPLGGAT 56
Query: 53 RWWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYD-PLSLVR 111
WW + SL L L S G L+ + + D+ + + + GA + +N Y PL V
Sbjct: 57 HWWRERSLHALAQELASRGVKLL-RATGDARTVIPSIAHEVGADTVTWNRRYHGPLREV- 114
Query: 112 DHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLP 171
D R K L GI S L EPW+V +AQG P+ F F S D + PL
Sbjct: 115 DARVKATLADAGINAISCPGFTLVEPWEVTNAQGNPYKVFTPFAAAARSQLAD-EEPLPV 173
Query: 172 PKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKN 231
P+ + +M S + E A LA+ W+PG + A + L L Y++
Sbjct: 174 PELLAGREMGASASSSWPNPSADEPQWAASLAQYWTPGEAGARERLGQL---DLAHYAEE 230
Query: 232 RRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLRE 291
R TS LSPHL FGEVS R+V+ V+ A E + F + R+
Sbjct: 231 RDIPARNATSLLSPHLRFGEVSPREVW-------VAAAEEPD------AEKFQSELLWRD 277
Query: 292 YSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLH 351
++ + ++ P R + F W ++ K W++G TG PLVDAGMRELW TG++H
Sbjct: 278 FAWHRLYHLPDLATRNVRQKFNRFDWSWNDPRLKDWQEGTTGIPLVDAGMRELWHTGYMH 337
Query: 352 DRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDN 411
+R+R+VV SF K L + WR G ++FWDTL+DAD S+ WQ+++G D F RI N
Sbjct: 338 NRVRMVVGSFLTKNLGIHWRLGEEWFWDTLVDADAASNPFNWQWVAGCGDDAAPFFRIFN 397
Query: 412 PQFEGYKFDPNGEYVRRWLPELARLP 437
P+ + +FDP+G Y+R+W P L+ P
Sbjct: 398 PETQAQRFDPDGAYIRQWAPTLSAPP 423
>gi|393725140|ref|ZP_10345067.1| deoxyribodipyrimidine photo-lyase [Sphingomonas sp. PAMC 26605]
Length = 457
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 148/431 (34%), Positives = 223/431 (51%), Gaps = 27/431 (6%)
Query: 19 DNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKR 78
D PAL A GAVI V++ Y G SRWWL HSL+ LD++LR G+ L+ +R
Sbjct: 17 DQPALVAAAAEGAVIPVYVLDNAAAKQYAMGGASRWWLHHSLTSLDAALRGKGSRLILRR 76
Query: 79 STDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPW 138
D+ L +V + GA ++ ++P R E + + + + + L P
Sbjct: 77 G-DAAEELAKVAEDAGAKRVHAIRHFEPW-----WRNAERAVGKALDLVCHDGNYLARPG 130
Query: 139 DVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFED--ESEK 196
+ G + + FW + L P P P I + + SD+L D ++
Sbjct: 131 TITTGSGGQYKIYTPFW-RALKATLPPPEPTRVPAHI-AAPKTWPESDSLADWDLLPTKP 188
Query: 197 GSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRK 256
+ +AW+PG A K L F + Y + R +S LSPHLHFGE+S +
Sbjct: 189 DWSTGFGKAWTPGEDAAHKRLNAFRD-QAARYDETRNLPSIDGSSRLSPHLHFGELSAAQ 247
Query: 257 VFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP---YSHERPLLGHLK 313
V+H V AG SV++FL IG R+Y++ + +P + R LG L+
Sbjct: 248 VWHAV-----------TDAGG-SVDVFLSEIGWRDYAQNVILQYPDYGTRNGRDALGGLE 295
Query: 314 FFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWG 373
+ + KAW+QGRTGYP+VDAGMR+LW TGW+H+R+R++ +SF +K L + WR G
Sbjct: 296 WRTGKEANADLKAWQQGRTGYPIVDAGMRQLWTTGWMHNRVRMITASFLIKHLLIDWRAG 355
Query: 374 MKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPEL 433
++FWD L+D D S+++ WQ+ +GT D F R+ P + KFD G+Y+R W+PEL
Sbjct: 356 ERWFWDCLVDGDYGSNSVNWQWTAGTGIDSNMFSRVMAPLVQSPKFDA-GDYIREWVPEL 414
Query: 434 ARLPTEWIHHP 444
A + + IH P
Sbjct: 415 AGVKGDAIHDP 425
>gi|311739236|ref|ZP_07713073.1| deoxyribodipyrimidine photolyase [Corynebacterium pseudogenitalium
ATCC 33035]
gi|311305662|gb|EFQ81728.1| deoxyribodipyrimidine photolyase [Corynebacterium pseudogenitalium
ATCC 33035]
Length = 477
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 154/443 (34%), Positives = 217/443 (48%), Gaps = 32/443 (7%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPAL-----AAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWW 55
M+ C ++WFR DLR+ DN AL AA + ++AV + P G G + WW
Sbjct: 41 MTAMTC-LMWFRDDLRLHDNQALSRAATAASLGDAPLVAVVLDEPAYPGTRPLGGATTWW 99
Query: 56 LKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYD-PLSLVRDHR 114
+ SL L L G L+ + + D+ + + GAT + + Y PL V D
Sbjct: 100 RERSLYALAHDLADHGVELI-RAAGDAREEIPRLAAELGATTVTWTRRYHGPLREV-DAT 157
Query: 115 AKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKR 174
KE LT+QG S L EPW+V + QGQP+ F F K + D P P
Sbjct: 158 VKETLTSQGTTATSLPGFTLVEPWEVTNGQGQPYKVFTPF-SKAAASQVAGDEPEGVP-- 214
Query: 175 INSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRK 234
+M S + +E A LA W+PG + A + L L Y++ R
Sbjct: 215 ----EMGASASSASAWPKPTEPAWAASLAEHWTPGEAGARERLAQL---DLANYAEERDI 267
Query: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSR 294
TS LSPHL FGEVS R+V+ + + F + R+++
Sbjct: 268 PALNATSLLSPHLRFGEVSPREVWFAAAEEPEA-------------AKFHSELLWRDFAW 314
Query: 295 YMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
+ ++ P + F W D+ K W+ G TG PLVDAGMRELWATG++H+R+
Sbjct: 315 HRLYHLPNLATENVREKFDRFDWSWDDPRLKDWQAGTTGIPLVDAGMRELWATGYMHNRV 374
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R+VV SF K L + WR G ++FWDTL+DAD S+ WQ+++G D F RI NP+
Sbjct: 375 RMVVGSFLTKNLGIHWRLGEEWFWDTLVDADAASNPFNWQWVAGCGDDAAPFFRIFNPET 434
Query: 415 EGYKFDPNGEYVRRWLPELARLP 437
+ +FDP+GEYVRRW P L+ P
Sbjct: 435 QAKRFDPDGEYVRRWAPALSAPP 457
>gi|393759561|ref|ZP_10348374.1| deoxyribodipyrimidine photo-lyase [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393162122|gb|EJC62183.1| deoxyribodipyrimidine photo-lyase [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 514
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 155/495 (31%), Positives = 246/495 (49%), Gaps = 42/495 (8%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG---AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
+ W RRDLR++D+ AL +++G A + VF + P RV+ ++ SL L
Sbjct: 49 LCWLRRDLRLQDHAALHHALQSGLPVACVFVFDSTILDSLPADDVRVA--FILDSLQSLQ 106
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
LR G+ L+T D V + + A ++ N Y+P +L RDH ++L AQG
Sbjct: 107 EQLRQHGSELITVHG-DPVQQIPLLANHLNAQTVYANEDYEPAALTRDHAVSQSLAAQGR 165
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR-- 182
++ F +++ ++ Q QP+ F + L+ + P I + D S+
Sbjct: 166 VLKLFKDQVIFARDEILTQQKQPYTVFTPYKRNWLAR--------IQPSDIQAYDCSQGQ 217
Query: 183 ---CPSDTLVFEDE---SEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
P+ L E E+ LL+ A GW A L F P I RR
Sbjct: 218 WAPLPAQALPCLKELGFHEEARTKLLSPA---GWQGAQTLLQQF--EPRIHAYHERRDFP 272
Query: 237 SAT-TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
+ S+L+PHL FG +S+R+ L +W ++ A +L + RE+ +
Sbjct: 273 AKRGVSYLAPHLRFGTLSIRQAVAL------AWPSDSEGAAT-----WLSELIWREFYQQ 321
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
++HP + + K + + +F+AW+ G+TGYP+VDA MR+L +G++H+R+R
Sbjct: 322 FLWHHPETAQESFKPAYKNLPFPNRDDWFQAWKDGQTGYPIVDAAMRQLNQSGYMHNRLR 381
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WRWG +YF LLD D+ S+ GWQ+ + T D + + RI NP +
Sbjct: 382 MISASFLVKDLLIDWRWGEQYFAQKLLDYDMASNVGGWQWAASTGCDAQPYFRIFNPITQ 441
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
KFDP G+++RR++PELA L + IH PW A + L LG +YP PIV D +
Sbjct: 442 SRKFDPEGQFIRRYVPELASLDKQAIHAPWQAKQLPL---AFRLGQHYPAPIVDHDTQRH 498
Query: 476 RLDEALSEMWQQEAA 490
+ +QEAA
Sbjct: 499 LALALFKQAGEQEAA 513
>gi|171913802|ref|ZP_02929272.1| Deoxyribodipyrimidine photo-lyase [Verrucomicrobium spinosum DSM
4136]
Length = 475
Score = 226 bits (575), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 148/468 (31%), Positives = 234/468 (50%), Gaps = 23/468 (4%)
Query: 6 CSIVWFRRDLRVEDNPAL-AAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
S+ WFRRDLR+ DN AL AA + VI ++ + ++ + G + +L +L L
Sbjct: 7 VSLHWFRRDLRLTDNTALHAAQTASTQVIPFYVLSSWKKAHAWTGPNRQHFLCGNLESLA 66
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+L ++G+ L+ RS ++VS + +++ TGAT L+ N DP + G+
Sbjct: 67 KNLEAIGSRLII-RSGETVSEIERLIRETGATALYTNRDPDPYGQTIETHVIALCNKLGV 125
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMP-FDPDAPLLPPKRINSGDMSRC 183
A + +L++P +V G P+ F + + LS+P P + + S +
Sbjct: 126 AFHTCKDAVLHQPQEVLTGNGGPYRVFTPYSKNWLSLPKAQPLSKVRTLGDAPSPKIKSL 185
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGP-LIEYSKNRRKADSATTSF 242
P T+V E + +PG A + TF++ L Y + R TS
Sbjct: 186 PLPTVVHWHLPEPTATLP-----TPGEKAARDRMKTFVDSVRLPRYEETRNFPSVPGTSQ 240
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSP L +G +S+R+++H R +Q G A +N ++K + RE+ YM+ H Y
Sbjct: 241 LSPDLRYGLISIRELYH--RCQQALAQAGGQPAAQSGINTYIKELAWREF--YMAVLHFY 296
Query: 303 SH--ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
E L+ SW D AW++GRTG+PLVDAGMR+L ATGW+H+R+R++VS
Sbjct: 297 PEVLETDFNPDLRGVSWHQDPAGLAAWKEGRTGFPLVDAGMRQLLATGWMHNRVRMIVSM 356
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L + W G +F L+D ++ S+ GWQ+ +GT D + RI NP + ++D
Sbjct: 357 FLTKDLHVHWMEGESHFMQLLVDGEIASNNGGWQWSAGTGADAAPWFRIQNPWTQTKRYD 416
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
P G+Y++ W+PEL +P E P G+ L YP PIV
Sbjct: 417 PEGKYIKTWVPELKDVPAEMFFAP--------PTNGLPLAKGYPLPIV 456
>gi|325568101|ref|ZP_08144542.1| deoxyribodipyrimidine photolyase [Enterococcus casseliflavus ATCC
12755]
gi|325158302|gb|EGC70453.1| deoxyribodipyrimidine photolyase [Enterococcus casseliflavus ATCC
12755]
Length = 473
Score = 225 bits (573), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 150/496 (30%), Positives = 235/496 (47%), Gaps = 42/496 (8%)
Query: 5 GCSIVWFRRDLRVEDNPALAAGVRA----GAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
++WFR+DLR+EDN AL + + ++ VF E + P S + ++
Sbjct: 2 AIHVMWFRKDLRLEDNTALTEALLSLQANDQLLCVFHL---NEKQFLPDAPSHDYFFSAV 58
Query: 61 SHLDSSLR--SLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEA 118
+H +++ +L L+T T++ L +QL+FN RD KE
Sbjct: 59 AHFIEAVKKQNLTIHLLTGTLTEAFDQLFACYPEW--SQLYFNFDNRGYGRKRDLYIKEL 116
Query: 119 LTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSG 178
+ +G+ V SF L++P +V G + F +++K + +P P + +
Sbjct: 117 VEKKGVTVHSFEEHHLHQPTEVTKEDGTYYKKFTPYYKKWIQLP-------KPVYQKQAL 169
Query: 179 DMSRCPSDTLVFEDESE-KGSNALLARAWS---------PGWSNADKALTTFINGPLIEY 228
D + F D K ALLA + G A K L F+ L Y
Sbjct: 170 DFEKAAH----FNDAPHFKAGTALLAEVLNNRKTDFSTIVGEDYAHKQLQAFVQKRLAAY 225
Query: 229 SKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIG 288
K+R TS LSP L FG++S+RKV WA FLK +
Sbjct: 226 EKDRDLPSIKGTSRLSPFLSFGQISIRKV----------WAACQGMPPSTGKATFLKELA 275
Query: 289 LREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATG 348
R++ + F HP L+ + W DE F W+ G+TGYP++DA MR+L TG
Sbjct: 276 WRDFYHMIYFTHPEQKNYELIEKYRNMDWQKDEEAFNKWQAGQTGYPIIDAAMRQLNQTG 335
Query: 349 WLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDR 408
W+H+R+R++V+SF K L + WR G YF L+D D S+ GWQ+ + T D + R
Sbjct: 336 WMHNRLRMIVASFLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDAVPYFR 395
Query: 409 IDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
I NP +G KFD G Y+++++PELA+LP ++IH P+ + + LG++YP PIV
Sbjct: 396 IFNPITQGKKFDKEGTYIKQFVPELAQLPLKFIHEPYLMTDEEQADLKVVLGTDYPLPIV 455
Query: 469 RIDAAKCRLDEALSEM 484
+ A+ R + S++
Sbjct: 456 DHNEARKRALDLYSKI 471
>gi|429207044|ref|ZP_19198304.1| Deoxyribodipyrimidine photolyase [Rhodobacter sp. AKP1]
gi|428190039|gb|EKX58591.1| Deoxyribodipyrimidine photolyase [Rhodobacter sp. AKP1]
Length = 470
Score = 225 bits (573), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 155/473 (32%), Positives = 238/473 (50%), Gaps = 23/473 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I+WFRRDLR+ DNP LA G +I +FI PE E G +W L + +
Sbjct: 7 ILWFRRDLRLADNPMLAEAAATGRPLIPLFILDPETEAL---GAAPKWRLGLGVEAFARA 63
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L LG+ LV +R +++ L +V TGA + ++ L++P RD K L GI
Sbjct: 64 LEGLGSRLVLRRGP-ALAVLEALVAETGAAGVHWSRLWEPAWRARDEGVKAGLRQAGIEA 122
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
S ++EPW+V QG + + FW+ P +P PP R+ S ++ P+
Sbjct: 123 ASHAGHTIFEPWEVETGQGGFYRVYTPFWKAVKDRPVAASSP--PPARLPS--PAKWPAS 178
Query: 187 TLVFEDESEKGSN---ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
+ + + N A++A + G + A + L F++GPL Y+ R + D+ TS L
Sbjct: 179 ERLASWDLGRAMNRGAAVVAPHLAVGEAAAAERLARFLSGPLDRYAAERDRPDAPLTSRL 238
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
S +L +GE+S R ++H + +AG E FL+ I RE+ ++ ++ P
Sbjct: 239 SENLTYGEISARSLWHAGMRARAE-----GRAGAEK---FLQEIAWREFGWHLLYHTPEI 290
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
R G F W D + WR+G TG P VDA MREL+ TG +H+R R++ S+
Sbjct: 291 ARRNWRGDWDAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYLT 350
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L WR G +F D L+D D S+ALGWQ+++G+ PD + RI NP + KFDP
Sbjct: 351 KHLLTDWRVGQAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPES 410
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
Y +R++ E+AR P E+V ++ G+ YP P+V + + R
Sbjct: 411 AYRQRFVAEIARRPGP---EALAFFEAVPRSWGLAPDRCYPGPVVGLAEGRER 460
>gi|443475122|ref|ZP_21065081.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena biceps PCC 7429]
gi|443020045|gb|ELS34048.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena biceps PCC 7429]
Length = 489
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 156/476 (32%), Positives = 241/476 (50%), Gaps = 28/476 (5%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRA----GAVIAVFIWAPE--EEGPYYPGRVSRW 54
+SG+ ++VW RRDLR++DNPAL+ + G V+ +FI+ P+ ++G +V
Sbjct: 15 LSGQ-IALVWHRRDLRIDDNPALSEAIAQVGDQGKVLGLFIFDPDILDDGVTEGSKVD-- 71
Query: 55 WLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHR 114
++ L L ++ R LG+ L+ + ++SL + KA + LFFN +P ++ RD
Sbjct: 72 FMLGCLRELQTNYRRLGSDLLFMYG-EPITSLCSLAKAINTSHLFFNQDVEPFAIKRDRE 130
Query: 115 AKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKR 174
A +AL G+ V+SF L P + G+P+ + FW S P PL P++
Sbjct: 131 ATQALQEIGVKVQSFVDIGLIAPDAIATQAGEPYKVYTPFWRNWQSKP--KPQPLDAPQK 188
Query: 175 INS-GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFING-PLIEYSKNR 232
+ P L E + ++ L + G S A L F +G ++ Y R
Sbjct: 189 LTGLASYENLPVIPLPSLRELKFINDITLPES---GESAALALLEAFCDGNGILRYQTER 245
Query: 233 RKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREY 292
A TS LSPHL FG V +R+V+ Q ++ + AG + ++ + + RE+
Sbjct: 246 DFPAHAGTSTLSPHLRFGTVGIRRVWEKAIAAQQLVRSDEDLAG---ITIWQQELAWREF 302
Query: 293 SRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHD 352
+++ F+ P ++ F W D F+AW G TGYP+VDA MR+L TGW+H+
Sbjct: 303 YQHVLFHFPALATGAYRPQMQSFPWDDDPEKFEAWCAGLTGYPIVDAAMRQLNQTGWMHN 362
Query: 353 RIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNP 412
R R++V+SF K L + W+ G +YF LLD DL ++ GWQ+ + + D + RI NP
Sbjct: 363 RCRMIVASFLTKDLIINWQLGERYFMQKLLDGDLAANNGGWQWSASSGMDPKPL-RIFNP 421
Query: 413 QFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
+ K+DP GEY+ RWLPEL L T + N P Q NYP PIV
Sbjct: 422 ASQARKYDPEGEYILRWLPELQGLTTAELLSG-NIPPHQCQR------RNYPLPIV 470
>gi|294678477|ref|YP_003579092.1| deoxyribodipyrimidine photo-lyase [Rhodobacter capsulatus SB 1003]
gi|294477297|gb|ADE86685.1| deoxyribodipyrimidine photo-lyase [Rhodobacter capsulatus SB 1003]
Length = 483
Score = 224 bits (572), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 149/473 (31%), Positives = 242/473 (51%), Gaps = 24/473 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
++W RRD R+ D+P L+A +G V+A+FI P E G +W L+ +L+ +
Sbjct: 8 LLWLRRDFRLSDHPMLSAAAASGRPVLALFILDPLAEAY---GAAPKWRLEQALAAFAPA 64
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L + G LV +R +++ L +V+ +GA ++++ DP ++ RD K AL A+G+
Sbjct: 65 LAACGVPLVLRRGP-ALAVLRQVLAESGAGAVWWSRDLDPAAIARDTEVKTALRAEGLEA 123
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
RSF+ LL+ PW V QG P+ + +W + P PL P + G + R S
Sbjct: 124 RSFDGQLLFAPWAVQTGQGGPYRVYTPYWRAVRGLTVAP--PLAPVTALRPGPVLRGESL 181
Query: 187 TLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPH 246
+ + + A++A+ G + A L F+ + Y R TS LS H
Sbjct: 182 DALGLGRAMRRGGAVVAKYARVGEAAAQARLERFLREGIETYQARRDFLAENATSELSEH 241
Query: 247 LHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHER 306
L +GE+S R ++H + A +AG E+ FLK + RE++ ++ F +P
Sbjct: 242 LAWGEISPRVIWH-----AGAQAMAEGRAGAET---FLKELVWREFAWHLMFYYPRLATE 293
Query: 307 PLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVL 366
F W + + WR+G+TG P+VDA MRE++ TG +H+R R++V+S+ K L
Sbjct: 294 NWRPDWDSFPWAGESAAAERWRRGQTGEPIVDAAMREMYVTGRMHNRARMIVASYLTKHL 353
Query: 367 QLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYV 426
WR G+ +F D L+D D ++A+GWQ+++G PD + RI NP + KFDP G Y
Sbjct: 354 LTDWRIGLAWFEDCLIDHDPAANAMGWQWVAGCGPDAAPYFRIFNPASQAEKFDPEGRYR 413
Query: 427 RRWLPELARLPTEWIHHPWNAPE---SVLQAAGIELGSNYPFPIVRIDAAKCR 476
R WL E R H P A + +V ++ G+ G+ P++ + A + R
Sbjct: 414 RAWLAEGNR------HAPQTAQDFFAAVPRSWGLVPGAALSAPLIDLAAGRDR 460
>gi|163746389|ref|ZP_02153747.1| deoxyribodipyrimidine photolyase, putative [Oceanibulbus indolifex
HEL-45]
gi|161380274|gb|EDQ04685.1| deoxyribodipyrimidine photolyase, putative [Oceanibulbus indolifex
HEL-45]
Length = 473
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 156/487 (32%), Positives = 243/487 (49%), Gaps = 35/487 (7%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHS 59
MS IVWFRRDLR+ D+PALAA + G VI +FI + + G ++ L +
Sbjct: 1 MSENAPLIVWFRRDLRLSDHPALAAACKTGRPVIPLFIHDNQSDAL---GAAPKFRLGLA 57
Query: 60 LSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
L+ L +L+ G+ L+ +R D++ L +V++ TGA ++++ LYDP ++ RD + K+AL
Sbjct: 58 LACLGDTLKEKGSRLILRRG-DALDVLRDVIEQTGAGAVYWSRLYDPAAIDRDTKVKDAL 116
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGD 179
G+ SF L++EPW V G + F +W+ D PL P I
Sbjct: 117 KEDGVEACSFAGHLMFEPWTVETKTGGFYKVFTPYWKSVRGR--DVAEPLATPSEI---- 170
Query: 180 MSRCPSD---TLVFED-----ESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKN 231
R P D + V +D E ++G + + G + A L +FI + Y ++
Sbjct: 171 --RAPEDWPDSDVLDDWQMDAEMQRGRDVVRPYV-RLGEAAAQARLGSFIADIVDGYDES 227
Query: 232 RRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLRE 291
R TS LS +L GE+S +H + G FLK + RE
Sbjct: 228 RDMPGEDGTSGLSENLSLGEISPAHCWHA--------GQRAMQEGKRGAETFLKELAWRE 279
Query: 292 YSRYMSFNHPYSHERPLLGHLKFFSWVVDE--GYFKAWRQGRTGYPLVDAGMRELWATGW 349
++ ++ ++ P ++ + F W DE AW+QGRTG P VDA MREL TG
Sbjct: 280 FAYHLMYHTPRILDQNWREEWQAFPWNEDERCAEVLAWKQGRTGMPFVDAAMRELQVTGR 339
Query: 350 LHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRI 409
+H+R R++V+S+ K L WR G K+F + L+D D ++A+GWQ+ +G+ PD F RI
Sbjct: 340 MHNRGRMIVASYLTKHLMCHWRIGQKWFEEHLIDWDPANNAMGWQWAAGSGPDATPFFRI 399
Query: 410 DNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVR 469
NP+ + +FD Y RRW+ E P+E ++A + + G +YP PIV
Sbjct: 400 FNPETQLDRFDKGRNYTRRWIAEGREKPSEDALEYFDA---IPRRWGRRPDDDYPDPIVD 456
Query: 470 IDAAKCR 476
+ + R
Sbjct: 457 LSEGRAR 463
>gi|334344458|ref|YP_004553010.1| DNA photolyase FAD-binding protein [Sphingobium chlorophenolicum
L-1]
gi|334101080|gb|AEG48504.1| DNA photolyase FAD-binding protein [Sphingobium chlorophenolicum
L-1]
Length = 458
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 157/447 (35%), Positives = 232/447 (51%), Gaps = 37/447 (8%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
++W R+DLR+ D ALAA VR G VI V++ + + G SRWWL HSL++LD+SL
Sbjct: 6 LLWLRQDLRLADQAALAAAVREGPVIPVYVLDDQAPRQWKMGGASRWWLHHSLANLDASL 65
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
R G+ L+ R DSV L+ + + GA ++ H Y+P R E A+ + +
Sbjct: 66 REKGSRLIL-RQGDSVEQLVAIAEEVGAGRVHALHHYEPWW-----RNAEKAVAKRLDLC 119
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
+ LL P V G + + F + + P P+ P RI++ PSD
Sbjct: 120 LHDGGLLLPPGVVRTGGGSSYRIYTPF-ARAVMEQMPPATPVRAPSRIDA------PSDW 172
Query: 188 LVFEDESEKGS-------NALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
+ ++ G + W+PG + A + F++ +Y R T
Sbjct: 173 PKSDSLADWGLLPVKPDWAVAFSSDWTPGEAGARTNVAAFLD-EAADYDVARNLPSQEGT 231
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSPHLHFGEVS V+H + GD++ FLK + R+Y+ +
Sbjct: 232 SRLSPHLHFGEVSPAYVWHRI-----------VGTGDDATT-FLKELIWRDYAHTQIWAM 279
Query: 301 P-YSHE--RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
P Y E RP + + FKAW+ GRTGYP+VDAGMR+LWATGW+H+R+R++
Sbjct: 280 PTYGSENARPAFDAMPWRDLREAGEDFKAWQSGRTGYPIVDAGMRQLWATGWMHNRVRMI 339
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
+SF +K L + WR G ++FWDTL+DA ++++ WQ+++G+ D F RI P +
Sbjct: 340 AASFLIKHLLIDWRHGARWFWDTLVDASYANNSVNWQWVAGSGVDANIFSRIMAPLTQSE 399
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHP 444
KFD G Y+R W+PELA L E IH P
Sbjct: 400 KFDAAG-YIRTWVPELAHLDDEHIHDP 425
>gi|388257421|ref|ZP_10134600.1| deoxyribodipyrimidine photolyase [Cellvibrio sp. BR]
gi|387938588|gb|EIK45140.1| deoxyribodipyrimidine photolyase [Cellvibrio sp. BR]
Length = 469
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 141/445 (31%), Positives = 218/445 (48%), Gaps = 18/445 (4%)
Query: 9 VWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
+W R DLR+ DNPAL GA V+AV+I + R +++ L L + L
Sbjct: 1 MWLRHDLRLRDNPALFKAAELGAGVVAVYIHCDAYVRLHDQSAAQRDFIRRHLHILRNEL 60
Query: 68 RSLGTSLVTKRSTDSVS---SLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
L +L+ R LL + ++ + FFN Y L RD A + L QGI
Sbjct: 61 ARLNITLLVSRVEKPAQIAPELLRLAQSVNGSHCFFNAEYPVNELNRDMAANQLLREQGI 120
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS--MPFDPDAPLLPPKRINSGDMSR 182
AV+ + + P V + QG+P+ F AF +K L MP LP + +
Sbjct: 121 AVKRCHDRCIVPPGMVRNGQGEPYKVFTAFKKKWLQTVMPLSLTPLALPQSQTLDSVIKA 180
Query: 183 CPSDTL--VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
C D + +F + +AL W G A + L FI L +Y R T
Sbjct: 181 CSPDAIDQLFSGHDLRDLSAL----WPAGEQEAYRRLDDFIANGLTQYLDQRDYPAIEGT 236
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP+ G +S R+ + V G+ +G+ ++ + RE+ +++ ++
Sbjct: 237 STLSPYFAVGSLSPRQA-----LSAVLAYTYGDWSGNAGAACWISELIWREFYQHVVVDY 291
Query: 301 PYSHERPLL-GHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P +R + H + F W D F+AW +G TG P+VDA MR+L ATGW+H+R+R+VV+
Sbjct: 292 PQVCKRKAMQAHTEAFPWQKDTALFEAWCKGMTGIPIVDAAMRQLNATGWMHNRLRMVVA 351
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
F K Q+ WRWG +YF L+D D ++ GWQ+ + T D + RI NP + +F
Sbjct: 352 MFLTKNCQIDWRWGEQYFMSQLIDGDFAANNGGWQWSASTGTDAAPYFRIFNPCSQSERF 411
Query: 420 DPNGEYVRRWLPELARLPTEWIHHP 444
DP G+++R+W+ E+A L + IH+P
Sbjct: 412 DPKGDFIRKWVSEVAHLSAKEIHNP 436
>gi|192360182|ref|YP_001982413.1| deoxyribodipyrimidine photolyase [Cellvibrio japonicus Ueda107]
gi|190686347|gb|ACE84025.1| deoxyribodipyrimidine photolyase [Cellvibrio japonicus Ueda107]
Length = 476
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 145/455 (31%), Positives = 221/455 (48%), Gaps = 34/455 (7%)
Query: 7 SIVWFRRDLRVEDNPAL-AAGVRAGAVIAVFIWAPEEEG--PYYPGRVSRWWLKHSLSHL 63
++VWFR DLRV DNPAL A V+AV++ G P P R+ +++ L L
Sbjct: 3 ALVWFRNDLRVRDNPALYKAAEEKQGVLAVYVHCEAYVGRFPIAPARLD--FIRRHLLVL 60
Query: 64 DSSLRSLGTSL---VTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
L L L R+ +L +V + FFN Y L RDH+ + L
Sbjct: 61 VRELAQLNIPLRLIAVNRAEQIAPALAALVTQYNIDKCFFNAEYPLDELARDHQVNQLLR 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS--MPF--------DPDAPLL 170
AQG+ V+ + ++ P + G+P+ F AF K L MP D A +
Sbjct: 121 AQGVLVKRCHDRVIVPPGMIRTGNGEPYKVFTAFKRKWLQTVMPLHLQPLGLPDKQAQPM 180
Query: 171 PPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSK 230
P K + D++R +F + S + L W G A L +FI L Y
Sbjct: 181 PVKPVTQADINR------LFGEHSVRD----LEHLWPAGEDEACARLDSFIESGLTHYQD 230
Query: 231 NRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLR 290
R TS LSP+L G +S R+ I V +G+ + + ++ + R
Sbjct: 231 KRDFPALQGTSTLSPYLAIGSLSPRQA-----ISSVLCYTQGDWESNAGASCWISELIWR 285
Query: 291 EYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGW 349
E+ +++ + P R + H + F W D+ F W QG TG PLVDA MR+L TGW
Sbjct: 286 EFYQHVVVDFPQVCKHRAMQVHTEAFPWKKDKKQFSRWCQGNTGIPLVDAAMRQLVMTGW 345
Query: 350 LHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRI 409
+H+R+R+VV+ F K LQ+ WR G ++F + L+D D ++ GWQ+ + T D + R+
Sbjct: 346 MHNRLRMVVAMFLTKNLQIDWRLGERFFMEHLIDGDFAANNGGWQWSASTGTDAAPYFRV 405
Query: 410 DNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHP 444
NP + +FDP G+++R W+PELA +P ++IH+P
Sbjct: 406 FNPISQSERFDPQGDFIRSWIPELADVPLKYIHNP 440
>gi|383645238|ref|ZP_09957644.1| deoxyribodipyrimidine photo-lyase [Sphingomonas elodea ATCC 31461]
Length = 457
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 152/442 (34%), Positives = 224/442 (50%), Gaps = 27/442 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
++WFRRDLR+ D PALAA + AG VI V++ E G SRWWL HSL+ LD+ L
Sbjct: 6 LLWFRRDLRLADQPALAAALAAGTVIPVYVLDDETAKHRAMGGASRWWLHHSLASLDADL 65
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
R G+ L+ +R S L + + GA + Y+P R E A+ + +
Sbjct: 66 REKGSRLILRRGK-SDEELARLAEEVGAATVHCIRHYEPW-----WRNAERAVAKRLTLC 119
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWE--KCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
+ + L P V G P+ F FW + P P + S
Sbjct: 120 CHDGNYLLPPGAVTSGAGTPYRIFTPFWRSLRDRLPPAPPLRAPARIAAPATWPASDALD 179
Query: 186 DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
D + + + W PG + A K L F + Y R +S LSP
Sbjct: 180 DWKLLPTKPDWAEG--FRAEWEPGEAGAHKRLRRFKDHA-ARYDDTRNLPSIEGSSRLSP 236
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP---Y 302
HLHFGEVS +V+H + AG + V +L+ +G R++++ + P
Sbjct: 237 HLHFGEVSPAQVWHAL-----------EDAGGQ-VEEYLRELGWRDFAQNLICQFPDYAA 284
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ RP + + S E +AW++G+TGYP+VDAGMR+LWATGW+H+R+R++ +SF
Sbjct: 285 KNGRPSFDAMAWRSGKEAEADLRAWQRGQTGYPIVDAGMRQLWATGWMHNRVRMIAASFL 344
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
+K L + WR G ++FWDTL+DAD S+A+ WQ++SG+ D + R+ P + KFD
Sbjct: 345 IKHLLIDWREGERWFWDTLVDADYGSNAVNWQWVSGSGVDSSQWSRVMAPLSQSEKFDAA 404
Query: 423 GEYVRRWLPELARLPTEWIHHP 444
G Y+R W+PELA+LP IH P
Sbjct: 405 G-YIRHWVPELAKLPDAAIHDP 425
>gi|77462693|ref|YP_352197.1| deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
2.4.1]
gi|77387111|gb|ABA78296.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
2.4.1]
Length = 471
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 157/473 (33%), Positives = 237/473 (50%), Gaps = 23/473 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I+WFRRDLR+ DNP LA G +I +FI PE E G +W L + +
Sbjct: 8 ILWFRRDLRLADNPMLAEAAATGRPLIPLFILDPETEAL---GAAPKWRLGLGVEAFARA 64
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L LG+ LV +R +++ L +V TGA + ++ L++P RD K L GI
Sbjct: 65 LEGLGSRLVLRRGP-ALAVLEALVAETGAAGVHWSRLWEPDWRARDEGVKAGLRQAGIEA 123
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP-S 185
S ++EP +V QG + + FW+ P +P PP R+ S + P S
Sbjct: 124 ASHAGHTIFEPREVETGQGGFYRVYTPFWKAVKDRPVAASSP--PPARLLS--PAEWPVS 179
Query: 186 DTLVFED--ESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
+ L D + A++A + G + A + LT F++GPL Y+ R + D+ TS L
Sbjct: 180 ERLACWDLGRAMHRGAAVVAPHLAVGEAAAAERLTRFLSGPLDRYAAERDRPDAPVTSRL 239
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
S +L +GE+S R ++H + +AG E FL+ + RE+ ++ ++ P
Sbjct: 240 SENLTYGEISARSLWHAGMRARAE-----GRAGAEK---FLQELAWREFGWHLLYHTPEI 291
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
R G F W D + WR+G TG P VDA MREL+ TG +H+R R++ S+
Sbjct: 292 ARRNWRGDWDAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYLT 351
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L WR G +F D L+D D S+ALGWQ+++G+ PD + RI NP + KFDP
Sbjct: 352 KHLLTDWRVGQAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPES 411
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
Y +R+L E+AR P E+V ++ G+ YP P+V + + R
Sbjct: 412 AYRQRFLAEIARRPGP---EALAFFEAVPRSWGLRPDRCYPRPVVGLAEGRER 461
>gi|398384297|ref|ZP_10542330.1| deoxyribodipyrimidine photolyase [Sphingobium sp. AP49]
gi|397722893|gb|EJK83422.1| deoxyribodipyrimidine photolyase [Sphingobium sp. AP49]
Length = 458
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 159/451 (35%), Positives = 231/451 (51%), Gaps = 45/451 (9%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGP--YYPGRVSRWWLKHSLSHLDS 65
IVWFR+DLR+ D ALAA AG VI V++ +++GP + G +RWWL HSL LD
Sbjct: 6 IVWFRQDLRLSDQAALAAAAHAGPVIPVYV--LDDDGPRQWAMGGAARWWLHHSLRSLDE 63
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SLR+ G+ L+ R S L +V TGA ++ Y P R E Q +
Sbjct: 64 SLRARGSRLIL-RCGRSADVLAQVAAETGAKSVYALTHYAPWW-----RNAEKAVGQRLD 117
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS---------MPFDPDAPLLPPKRIN 176
+ + LL V G P+ + F + +P APL P+
Sbjct: 118 LCLHDGTLLLPAGAVRTGGGTPYRIYTPFARALMEHMPPAVPQPVPAQIQAPLRWPRSDA 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
D P S ++A A W+PG A+ L+ F++ L EY R
Sbjct: 178 LDDWPLLP--------RSPDWASAFHAD-WTPGEKGAEAHLSAFMD-ELDEYPDARNLPS 227
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LSPHLHFGE+S +V+H N GD + FL+ + R+Y+
Sbjct: 228 REGTSRLSPHLHFGEISPAQVWH----------QAANAQGDAMI--FLRELIWRDYAHNQ 275
Query: 297 SFNHP-YSHE--RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDR 353
+ P Y E +P + + +G F AW++GRTGYP+VDAGMR+LW TGW+H+R
Sbjct: 276 IWTMPTYGSENAQPAFDGMGWRDLEAAKGDFYAWKRGRTGYPIVDAGMRQLWQTGWMHNR 335
Query: 354 IRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQ 413
+R++ +SF +K L + WR G ++FWDTL+DAD ++++ WQ+++G+ D F RI P
Sbjct: 336 VRMIAASFLIKHLLIDWRHGARWFWDTLVDADYANNSVNWQWVAGSGVDANLFTRIMAPL 395
Query: 414 FEGYKFDPNGEYVRRWLPELARLPTEWIHHP 444
+ KFD +Y+R+W+PELA+L IH P
Sbjct: 396 SQSEKFD-AAQYIRQWVPELAQLDDHMIHDP 425
>gi|444362622|ref|ZP_21163126.1| FAD binding domain of DNA photolyase, partial [Burkholderia
cenocepacia BC7]
gi|443596438|gb|ELT64943.1| FAD binding domain of DNA photolyase, partial [Burkholderia
cenocepacia BC7]
Length = 387
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 142/363 (39%), Positives = 193/363 (53%), Gaps = 11/363 (3%)
Query: 112 DHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLP 171
D K +L A+G+AV S N LL EPW+V G P+ F A+ + APL
Sbjct: 10 DAALKTSLKARGVAVESSNGSLLNEPWEVLTGSGGPYQVFTAY-WRAARRDRAVAAPLPA 68
Query: 172 PKRINSGDMSRCPSDTLVFEDESEKGSNAL-----LARAW-SPGWSNADKALTTFINGPL 225
P +I + D + D +A L AW +P + A L F+ L
Sbjct: 69 PGQIVFHSWPKAVRDRALALDALALRPHAPDWAGGLRDAWPAPDEAGAHAQLDAFLTTSL 128
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
Y+ R + D TS LSP L FG VS R+V+H V+ + D+ FL
Sbjct: 129 AGYADARDRPDRPATSRLSPFLRFGNVSPRQVWHAVQGAASAGGAAYAADADK----FLS 184
Query: 286 SIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELW 345
+G RE+S + ++ P W D +AW++GRTGYPLVDAG+RELW
Sbjct: 185 ELGWREFSYTLLYHFPTLATDNFRAQFDAMPWRDDPAALRAWQRGRTGYPLVDAGLRELW 244
Query: 346 ATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRA 405
TGW+H+R+R+VV+SF +K L + WR G +F DTL+DAD ++A WQ+++G D
Sbjct: 245 TTGWMHNRVRMVVASFLIKHLLIDWRAGEAWFRDTLVDADPANNAASWQWVAGCGADAAP 304
Query: 406 FDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPF 465
+ RI NP +G KFDP+G YVRRW+PELA L IH PW A L+AAGI LG +YP
Sbjct: 305 YFRIFNPVAQGQKFDPDGAYVRRWVPELAGLDDASIHAPWEASPLALEAAGIRLGIDYPA 364
Query: 466 PIV 468
P+V
Sbjct: 365 PLV 367
>gi|326332769|ref|ZP_08199030.1| deoxyribodipyrimidine photolyase [Nocardioidaceae bacterium
Broad-1]
gi|325949468|gb|EGD41547.1| deoxyribodipyrimidine photolyase [Nocardioidaceae bacterium
Broad-1]
Length = 446
Score = 223 bits (568), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 161/492 (32%), Positives = 233/492 (47%), Gaps = 53/492 (10%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S++WFRRDLR+ D+PAL A G V+ +F+ P G GR RW + L+ L +
Sbjct: 3 TSLMWFRRDLRLGDHPALQAAAAEGQVVPLFVLDPRLAGS---GR--RW--ERLLASL-A 54
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LR + R D + +V GA+Q+ + P RD ++ L A GI
Sbjct: 55 ALREETDGALVIRQGDPAEVVADVAAEAGASQVHVSTETTPYGRRRDAAVEQRLAAAGIG 114
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGD-----M 180
+ + P V +A G P+ F F + R +GD M
Sbjct: 115 LVGTGSPYAVTPGRVRNASGAPYRVFTPFLRAWREHGW----------RAPAGDPEVEWM 164
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
++ SD L + E G A L R W + F L Y+++R + D T
Sbjct: 165 TKLESDPLPSHSDQEAGERAALHR-----WED-------FCAEDLAGYAESRDRPDLDRT 212
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LS L +GE+ R + G A E V F+ + RE+ + ++
Sbjct: 213 SRLSVALKYGEIHPRTLL-------ADLGTHGTGASGEDVERFVAELAWREFYADVLWHD 265
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P S R L L + D +AW+ G TGYP VDAGMR+L A GW+H+R+R+VV+S
Sbjct: 266 PGSAWRDLKDGLDGMRYEDDPELLEAWKSGTTGYPFVDAGMRQLLAEGWMHNRVRMVVAS 325
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F VK L + W G ++F D LLD D+ S++ GWQ+ +GT D + R+ NP +G +FD
Sbjct: 326 FLVKDLHMWWPVGARHFMDHLLDGDMASNSHGWQWAAGTGTDAAPYFRVFNPVTQGIRFD 385
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P G+YVRRW+PEL LP H PW E L YP P+V D A+ R EA
Sbjct: 386 PQGDYVRRWVPELRHLPGAAAHEPWRHSEG--------LAHGYPEPVV--DHAEER-REA 434
Query: 481 LSEMWQQEAASR 492
L + + + ++R
Sbjct: 435 LDRLAELKESTR 446
>gi|259416145|ref|ZP_05740065.1| deoxyribodipyrimidine photo-lyase type I [Silicibacter sp.
TrichCH4B]
gi|259347584|gb|EEW59361.1| deoxyribodipyrimidine photo-lyase type I [Silicibacter sp.
TrichCH4B]
Length = 474
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 147/431 (34%), Positives = 222/431 (51%), Gaps = 23/431 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I W RRDLR+ DNPAL A + G +I ++I P++E G ++ L L +
Sbjct: 8 IWWIRRDLRLRDNPALTAALETGGPIIPLYIHDPQDEAL---GAAPKFRLGLGLERFAKT 64
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L G+ L T R D++ L EV+K +GA + ++ LYDP ++ RD KE L A I V
Sbjct: 65 LEGHGSRL-TLRKGDALEVLREVIKESGAGHVVWSRLYDPEAIKRDTEIKEQLKAADITV 123
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDP--DAPLLPPKRINSGDMSRCP 184
+S L++EPW V G + + FW+ + DAP PK +
Sbjct: 124 KSTGGRLMFEPWTVETKDGGMYKVYTPFWKAVRDREVEGLIDAPANLPK-----PDAWPA 178
Query: 185 SDTLVFEDESE--KGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+D L + S + ++A G A + L F+ + Y +R A TS
Sbjct: 179 TDELADYNISAAMRRGAEIVAGYCRVGDDAALEQLDRFLEERVQTYKADRDFPSRAATSE 238
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LS +L +GE+S +++HL + + G + FLK + RE++ ++ ++ P+
Sbjct: 239 LSENLAWGEISPHRMWHL--------GAQAMRDGKQGAEHFLKEVVWREFAYHLMYHSPH 290
Query: 303 SHERPLLGHLKFFSWVVDEG-YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
R F W D G W+QG+TGY VDA MREL+ TG +H+R R++V+SF
Sbjct: 291 ILTRNWREEWDGFPWQDDPGEALLRWQQGQTGYDFVDAAMRELYVTGKMHNRARMIVASF 350
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L + W++GM++F D L+D D S+A+GWQ+++G+ PD F RI NP + KFDP
Sbjct: 351 LTKHLMIHWKFGMQWFEDCLVDWDPASNAMGWQWVAGSGPDAAPFFRIFNPDGQLEKFDP 410
Query: 422 NGEYVRRWLPE 432
G YVR WL E
Sbjct: 411 KGRYVRNWLAE 421
>gi|260433957|ref|ZP_05787928.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
ITI-1157]
gi|260417785|gb|EEX11044.1| deoxyribodipyrimidine photo-lyase [Silicibacter lacuscaerulensis
ITI-1157]
Length = 474
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 149/474 (31%), Positives = 240/474 (50%), Gaps = 24/474 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
++WFR+DLR+ D+PAL+A VR+G VI VFI + G +W L L+ L +
Sbjct: 9 LIWFRQDLRLSDHPALSAAVRSGRPVIPVFI---RDSLVDDLGAAPKWRLSLGLAALAQN 65
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L G+ LV RS ++ +L ++ TGA +++++ YDP ++ RD K LT G+
Sbjct: 66 LEHKGSKLVL-RSGPALDALKALIDETGAREVYWSRAYDPDAIARDTHIKSVLTELGLTA 124
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS- 185
+SF LL+EPW V G+PF F W D +P P+R+ + +
Sbjct: 125 KSFPGHLLFEPWTVATKTGKPFRVFTPMWRAVAQR--DVPSPDPAPERLAAPPLWPASEH 182
Query: 186 -DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
D +G+ ++ + G + A+ L F+ L Y R TS LS
Sbjct: 183 LDDWGLGHAMRRGAG-IVGQHVQAGETAAEARLDAFMER-LDAYPAQRDALADDGTSHLS 240
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
+L GE+ R V+H V+ + G + FL+ + RE++ ++ ++ P+
Sbjct: 241 EYLALGEIGPRTVWHRVKGAAL--------IGSIGADAFLRQLVWREFAYHLMYHTPHLL 292
Query: 305 ERPLLGHLKFFSWV--VDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ F W ++ +AW RTG P+VDAG+RE++ TG +H+R R++V+S+
Sbjct: 293 TQNWRPEWDGFPWNEDIETPEVRAWMTARTGIPVVDAGLREMYVTGRMHNRARMIVASYL 352
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
K L W+ GM +F D L+D D S+A+GWQ+++G+ PD F RI NPQ + KFDP
Sbjct: 353 TKHLMTHWKIGMDWFADCLVDWDAASNAMGWQWVAGSGPDASPFFRIFNPQTQAEKFDPT 412
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
G YVRRW+ E P + + E++ ++ + YP P+V + + R
Sbjct: 413 GAYVRRWVAEGQSDPPK---TALSYFEAIPRSWNLSPDDAYPQPVVDLKVGRER 463
>gi|372281898|ref|ZP_09517934.1| deoxyribodipyrimidine photo-lyase [Oceanicola sp. S124]
Length = 472
Score = 223 bits (567), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 165/498 (33%), Positives = 239/498 (47%), Gaps = 48/498 (9%)
Query: 7 SIVWFRRDLRVEDNPALAAGV-RAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++W RRDLR D+ ALAA R G VI VFI ++ G L L+ +
Sbjct: 5 CLLWIRRDLRTTDHEALAAACKRGGPVIPVFI---RDDSVTGLGAAPALRLDLGLAAFAA 61
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L+ G+ L+ RS + + L ++ K TGA +++ LYDP ++ RD R K AL G+
Sbjct: 62 RLKEKGSRLIL-RSGNPLEVLRDLAKETGAGAVYWQRLYDPAAIKRDSRVKTALREDGLD 120
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEK--------CLSMPFDPDAPLLPPKRINS 177
SF LL+EPW V QG + ++ FW+ LS P D AP P
Sbjct: 121 AESFAGHLLFEPWTVETGQGGFYKVYSPFWKAVRGRDVGPALSAPSDIPAPDAWPDSEAL 180
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
D + A++A +PG A + L F + +Y R D
Sbjct: 181 ADWQLS---------APMRRGRAVVAAHVTPGEQAAQQQLALFARDRIADYKDQRDFPDR 231
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSW-ANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS HL GE+S R+ +H W A E K G E+ FLK + RE++ ++
Sbjct: 232 EGTSDLSHHLTVGEISPRQCWH------AGWRALEEGKPGAET---FLKEVVWREFAYHL 282
Query: 297 SFNHPYSHERPLLGHLKFFSWVV-DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
++ P+ R F W D+ AW+QGRTG VDA MREL+ TG +H+R R
Sbjct: 283 MYHSPHILTRNWREDWDGFDWREEDDARVLAWKQGRTGVAFVDAAMRELFVTGRMHNRAR 342
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++V+S+ K + + W+ G +F D L+D D S+A+GWQ+++G+ PD + RI NP+ +
Sbjct: 343 MIVASYLTKHMLVHWKIGQAWFEDCLVDWDPASNAMGWQWVAGSGPDAAPYFRIFNPETQ 402
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPE--SVLQAA----GIELGSNYPFPIVR 469
KFDP Y RRWL E P PE S +AA G+ G P +V
Sbjct: 403 AEKFDPKARYRRRWLAEGQSDP---------GPEALSFYEAAPLSWGLSPGDAPPRALVD 453
Query: 470 IDAAKCRLDEALSEMWQQ 487
+ A + R A S + +Q
Sbjct: 454 LKAGRERALAAYSSLKEQ 471
>gi|15675407|ref|NP_269581.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes SF370]
gi|71911049|ref|YP_282599.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS5005]
gi|410680903|ref|YP_006933305.1| deoxyribodipyrimidine photo-lyase [Streptococcus pyogenes A20]
gi|13622594|gb|AAK34302.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
M1 GAS]
gi|71853831|gb|AAZ51854.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS5005]
gi|395454290|dbj|BAM30629.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes M1 476]
gi|409693492|gb|AFV38352.1| deoxyribodipyrimidine photo-lyase [Streptococcus pyogenes A20]
Length = 469
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 142/491 (28%), Positives = 228/491 (46%), Gaps = 30/491 (6%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
S++WFRRDLR++D ALA + + + + VF + E+ + S S+
Sbjct: 2 VSVMWFRRDLRIDDQKALAHAIASQSPTLCVFQFNKEQLNLLHSRNQSS--FITSVLAFR 59
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
L+ G L + + T ++FN+ +RD +A + GI
Sbjct: 60 KLLKCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGI 119
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
AV ++ L+ ++ + GQP+ F ++ + P + P+ P
Sbjct: 120 AVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYP--KETPIKVELSQGRWLNLETP 177
Query: 185 SDTL----VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
D L F+DE + A K L FI L Y NR T
Sbjct: 178 DDVLRTVESFKDEKYQDVATF---------DEASKQLNRFIQDQLAAYHANRDFPAQLGT 228
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP L G + +R V+H VR N G + FLK + R++ + +
Sbjct: 229 SRLSPFLRIGAIGIRTVYHAVR-------QAPNSLGQAT---FLKELAWRDFYNMVYVAY 278
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P +P+ WV + +F+ W++G+TGYP+VDA M +L TGW+H+R+R++V+S
Sbjct: 279 PDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVAS 338
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L WR G +YF L+D D S+ GWQ+ + T D + RI NP +G +FD
Sbjct: 339 FLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFD 398
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P GE+++ +LP+L +P +++H PW P+++ ++ +G++YP PIV D AK R
Sbjct: 399 PKGEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIV--DHAKQREQAI 456
Query: 481 LSEMWQQEAAS 491
W +E A
Sbjct: 457 AKYEWAKEKAK 467
>gi|255261881|ref|ZP_05341223.1| deoxyribodipyrimidine photo-lyase [Thalassiobium sp. R2A62]
gi|255104216|gb|EET46890.1| deoxyribodipyrimidine photo-lyase [Thalassiobium sp. R2A62]
Length = 473
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 167/487 (34%), Positives = 244/487 (50%), Gaps = 30/487 (6%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHS 59
M+ I+WFRRDLR+ D+PALAA V G ++ +FI EG G + L S
Sbjct: 1 MTDNSPIILWFRRDLRLGDHPALAAAVATGRPIVPLFIHDEVVEGQ---GAAPKMRLGFS 57
Query: 60 LSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
+ LD SL G+ LV +R ++ L +V+ TGA ++++ LYDPLS RD K AL
Sbjct: 58 VEALDRSLHGTGSRLVLRRGR-ALDVLRKVITETGAGAVYWSRLYDPLSKERDTAVKSAL 116
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWE--KCLSMPFDPDAP--LLPPKRI 175
G+ +SF LL+EPW V G + F W+ + +P AP L P+
Sbjct: 117 KDDGVTAQSFAGHLLFEPWTVETKTGGFYKVFTPMWKAVRGTDLPVSTPAPNRLEAPQEW 176
Query: 176 NSGD-MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRK 234
+ D ++ D + +G + L A + G A L TFIN + Y NR
Sbjct: 177 PASDALADWAMDAAMM-----RGRDVLAAFC-TVGEQAALSRLETFINERVGNYQTNRDL 230
Query: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSR 294
TS LS +L +GE++ +H WA + GD +FLK + RE++
Sbjct: 231 PRVDGTSRLSENLTYGEIAPLTCWH------AGWAALNH--GDADAEVFLKELVWREFAY 282
Query: 295 YMSFNHPYSHERPLLGHLKFFSWVVDEGYFKA--WRQGRTGYPLVDAGMRELWATGWLHD 352
++ + P+ F+W DE KA W+QGRTG VDA MRE++ TG +H+
Sbjct: 283 HLVHHTPHITTDNWKPDWDGFAWNTDETDPKAVAWKQGRTGIRFVDAAMREMYVTGTMHN 342
Query: 353 RIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNP 412
R R++V+S+ K L W+ G+K+F D L+D D S+A+GWQ+ SG+ PD + R+ NP
Sbjct: 343 RGRMIVASYLTKHLMCHWKIGLKWFEDCLVDWDPASNAMGWQWSSGSGPDATPYFRVFNP 402
Query: 413 QFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRI-D 471
+ KFD N EYV RW+ E P ++A V + I+ +YP P+V D
Sbjct: 403 VTQLDKFDKNREYVDRWIAEGRSQPHADALRYFDA---VPEHWAIKPTDDYPAPVVSAED 459
Query: 472 AAKCRLD 478
K LD
Sbjct: 460 GRKAALD 466
>gi|428218359|ref|YP_007102824.1| deoxyribodipyrimidine photo-lyase [Pseudanabaena sp. PCC 7367]
gi|427990141|gb|AFY70396.1| Deoxyribodipyrimidine photo-lyase [Pseudanabaena sp. PCC 7367]
Length = 489
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 146/481 (30%), Positives = 235/481 (48%), Gaps = 42/481 (8%)
Query: 7 SIVWFRRDLRVEDNPALAAGV-RAGAVIAVFIWAPE------EEGPYYPGRVSRWWLKHS 59
+IVW RRDLR+ DNPAL + + GA I +FI+ P+ E+ G+V ++
Sbjct: 12 TIVWHRRDLRIADNPALDQAIAQNGATIGIFIFDPQILESKAEDQTTGAGQVD--FMLGC 69
Query: 60 LSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
L L ++ + LG+ L+ D ++ ++ + A ++FFN +P + RD +A AL
Sbjct: 70 LQELQAAYQDLGSDLLFFHG-DPAKTIRDIAQTLNAARVFFNQDVEPFARERDRQACAAL 128
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGD 179
G+ V+SF L+ P ++ G P+ + FW ++ PL P ++
Sbjct: 129 AEIGVEVKSFLDLALHAPDAISTNSGTPYKVYTPFWRSWIAKA--KPQPLPSPAKL---- 182
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSN-----------ADKALTTFIN-GPLIE 227
D E S + L R G+S A++ L F + +
Sbjct: 183 ---VGLDGRTSESRSIEAKAIALPRLADLGFSCDQDIPTAGIKAAEQCLQDFCDTNKIFN 239
Query: 228 YSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSI 287
Y + R + TS LSPHL FG + +R+V+ ++ KAG + + + +
Sbjct: 240 YQQERNFPANPGTSMLSPHLRFGTIGIRQVWQATVAATEHIRSDEEKAG---LQTWRQEL 296
Query: 288 GLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWAT 347
RE+ +++ F+ P ++ F W DE F AW +G TGYP+VDA MR+L T
Sbjct: 297 AWREFYQHVLFHFPDLATGAYRSQMQVFEWDDDEAKFAAWCKGETGYPIVDAAMRQLNQT 356
Query: 348 GWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFD 407
GW+H+R R++V+SF K L + W+WG +YF + L+D D ++ GWQ+ + + D +
Sbjct: 357 GWMHNRCRMIVASFLTKDLIINWQWGERYFMEKLVDGDQAANNGGWQWSASSGMDPKPL- 415
Query: 408 RIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPI 467
RI NP + K+D +GEY+RRW+PELA L T + P+ + YP PI
Sbjct: 416 RIFNPASQARKYDKDGEYIRRWIPELAGLTTAELLSGNITPQQCKE-------RGYPMPI 468
Query: 468 V 468
V
Sbjct: 469 V 469
>gi|393721719|ref|ZP_10341646.1| deoxyribodipyrimidine photo-lyase [Sphingomonas echinoides ATCC
14820]
Length = 458
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 154/446 (34%), Positives = 226/446 (50%), Gaps = 57/446 (12%)
Query: 19 DNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKR 78
D PALAA + GA++ V++ E Y G SRWWL HSL+ LD+ LR++G+ L+ +R
Sbjct: 18 DQPALAAAIGEGAIVPVYVLDDETPKHYAMGGASRWWLHHSLASLDADLRAVGSRLILRR 77
Query: 79 S-TDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEP 137
D+V L E+ TGA ++ ++P R E A+ + + + + L P
Sbjct: 78 GKCDAV--LAELATETGANRVHCIRHFEPW-----WRNAERAVAKRLDLICHDGNYLAPP 130
Query: 138 WDVNDAQGQPFATFAAFWEKCL-------------SMPFDPDAPLLPPK--RINS-GDMS 181
+ G + F FW S+P AP P+ R+N G +
Sbjct: 131 GSITTGSGGQYKIFTPFWRALQQQMPPPAPLPKPSSIP----APAHWPRSERLNEWGLLP 186
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
P + F + WSPG + A L F Y + R +S
Sbjct: 187 TKPDWSTGFGAD------------WSPGEAGAHHKLNGFKRH-AATYGETRNLPSVEGSS 233
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+LHFGEVS +V+H V A G SV+ FL +G R+Y++ + P
Sbjct: 234 RLSPYLHFGEVSAAQVWHAV-------AGAGG-----SVDTFLGELGWRDYAQTVILQLP 281
Query: 302 ---YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
+ RP L L + + KAW+ GRTGYP+VDAGMR+LWATGW+H+R+R++
Sbjct: 282 DYGSRNGRPTLDTLPWRTGPDAAADLKAWQLGRTGYPIVDAGMRQLWATGWMHNRVRMIT 341
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF +K L + WR G ++FWD L+DAD S+A+ WQ+ +GT D F RI P + K
Sbjct: 342 ASFLIKHLLIDWREGERWFWDCLVDADYGSNAVNWQWTAGTGIDANMFVRIMAPLVQSPK 401
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHP 444
F+ G+Y+R+W+PELA++ E IH P
Sbjct: 402 FE-AGDYIRQWVPELAQVRGEAIHDP 426
>gi|326387639|ref|ZP_08209245.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium
nitrogenifigens DSM 19370]
gi|326207685|gb|EGD58496.1| deoxyribodipyrimidine photo-lyase type I [Novosphingobium
nitrogenifigens DSM 19370]
Length = 455
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 158/441 (35%), Positives = 217/441 (49%), Gaps = 28/441 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
+VW R+DLR+ D A A G V+ V++ E G SRWWL HSL LD L
Sbjct: 6 LVWLRQDLRLADQAAFLAAAAEGPVVPVYVLDDETPRHRRMGGASRWWLHHSLKSLDEGL 65
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
R G+ L+ +R + L E+ + GA ++ +P R E A+ + +
Sbjct: 66 RQRGSRLILRRGP-AHRELAELAREVGARRVHALAHVEPWW-----RNAERAVAKTLDLV 119
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSG----DMSRC 183
L P V G P+ + FW + LS P+ P RI++ D R
Sbjct: 120 LHEGQYLAPPGTVLTGSGLPYKIYTPFW-RALSERMPTHRPVPAPGRIDAPASWPDGDRL 178
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
TLV + A W+PG A + L FI G Y + R TS L
Sbjct: 179 DDWTLV---PTRPDWAAGFRTRWTPGEVGAHERLDMFI-GKASRYGEWRNFPSVEGTSRL 234
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SPHLHFGE+S V+H V A+ G SV+ FL +G R+Y+ + P
Sbjct: 235 SPHLHFGEISAATVWHSV-------ADAGG-----SVSTFLGEVGWRDYAANVLLQMPDY 282
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
R + F W D +AW+ G TGYP+VDAGMRELWATGW+H+R+R++ +SF V
Sbjct: 283 AGRSAREAFERFPWREDADDLRAWQTGMTGYPIVDAGMRELWATGWMHNRVRMIAASFLV 342
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WR G ++FWDTL+DAD +A+ WQ+ +GT D F RI P + KFD G
Sbjct: 343 KHLLIDWREGERWFWDTLVDADHAINAVNWQWTAGTGVDSNMFVRIMAPLTQSPKFDAAG 402
Query: 424 EYVRRWLPELARLPTEWIHHP 444
Y+RRW+PEL+ + IH P
Sbjct: 403 -YIRRWVPELSDVADADIHDP 422
>gi|94544269|gb|ABF34317.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10270]
Length = 477
Score = 222 bits (566), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 142/491 (28%), Positives = 229/491 (46%), Gaps = 30/491 (6%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
S++WFRRDLR++D ALA + + + + VF + E+ + S S+
Sbjct: 10 VSVMWFRRDLRIDDQKALAHVIASQSPTLCVFQFNKEQLNLLHSRNQSS--FITSVLAFR 67
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
L+ G L + + T ++FN+ +RD +A + GI
Sbjct: 68 KLLKCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGI 127
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
AV ++ L+ ++ + GQP+ F ++ + P + P+ + P
Sbjct: 128 AVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYP--KETPIKVELSQDRWLNLETP 185
Query: 185 SDTL----VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
D L F+DE + A K L FI L Y NR T
Sbjct: 186 DDVLRTVESFKDEKYQDVATF---------DEASKQLNRFIQDQLAAYHANRDFPAQLGT 236
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP L G + +R V+H VR N G + FLK + R++ + +
Sbjct: 237 SRLSPFLRIGAIGIRTVYHAVR-------QAPNSLGQAT---FLKELAWRDFYNMVYVAY 286
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P +P+ WV + +F+ W++G+TGYP+VDA M +L TGW+H+R+R++V+S
Sbjct: 287 PDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVAS 346
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L WR G +YF L+D D S+ GWQ+ + T D + RI NP +G +FD
Sbjct: 347 FLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFD 406
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P GE+++ +LP+L +P +++H PW P+++ ++ +G++YP PIV D AK R
Sbjct: 407 PKGEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIV--DHAKQREQAI 464
Query: 481 LSEMWQQEAAS 491
W +E A
Sbjct: 465 AKYEWAKEKAK 475
>gi|420263503|ref|ZP_14766140.1| deoxyribodipyrimidine photolyase [Enterococcus sp. C1]
gi|394769460|gb|EJF49316.1| deoxyribodipyrimidine photolyase [Enterococcus sp. C1]
Length = 473
Score = 222 bits (566), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 149/496 (30%), Positives = 234/496 (47%), Gaps = 42/496 (8%)
Query: 5 GCSIVWFRRDLRVEDNPALAAGVRA----GAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
++WFR+DLR+EDN AL + + ++ VF E + P S + ++
Sbjct: 2 AIHVMWFRKDLRLEDNTALTEALLSLQANDQLLCVFHL---NEKQFLPDAPSHDYFFSAV 58
Query: 61 SHLDSSLR--SLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEA 118
+H + + +L L+T T++ L +QL+FN RD KE
Sbjct: 59 AHFIEAAKKQNLTIHLLTGTLTEAFDQLF--AHYPEWSQLYFNFDNRGFGRKRDLYIKEL 116
Query: 119 LTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSG 178
+ +G+ V SF L++P +V G + F +++K + +P P + +
Sbjct: 117 VEKKGVTVHSFEEHHLHQPTEVTKEDGTYYKKFTPYYKKWIQLP-------KPVYQKQAL 169
Query: 179 DMSRCPSDTLVFEDESE-KGSNALLARAWS---------PGWSNADKALTTFINGPLIEY 228
D + F D K ALLA+ G A K L F+ L Y
Sbjct: 170 DFEKAAH----FNDAPHFKAGTALLAKLLKNRKTDFSTIVGEDYAHKQLQAFVQKRLAAY 225
Query: 229 SKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIG 288
K+R TS LSP L FG++S+RKV WA FLK +
Sbjct: 226 EKDRDLPSIKGTSRLSPFLSFGQLSIRKV----------WAACQGMPPSTGKATFLKELA 275
Query: 289 LREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATG 348
R++ + F HP L+ + W DE F W+ G+TGYP++DA MR+L TG
Sbjct: 276 WRDFYHMIYFTHPEQKNYELIEKYRNMDWQKDEEAFNKWQAGQTGYPIIDAAMRQLNQTG 335
Query: 349 WLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDR 408
W+H+R+R++V+SF K L + WR G YF L+D D S+ GWQ+ + T D + R
Sbjct: 336 WMHNRLRMIVASFLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDAVPYFR 395
Query: 409 IDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
I NP +G KFD G ++++++PELA+LP ++IH P+ + + LG++YP PIV
Sbjct: 396 IFNPITQGKKFDKEGTFIKQFVPELAQLPLKFIHEPYLMTDEEQADLKVVLGTDYPLPIV 455
Query: 469 RIDAAKCRLDEALSEM 484
+ A+ R + S++
Sbjct: 456 DHNEARKRALDLYSKI 471
>gi|254797170|ref|YP_003082010.1| deoxyribodipyrimidine photolyase [Neorickettsia risticii str.
Illinois]
gi|254590408|gb|ACT69770.1| deoxyribodipyrimidine photolyase [Neorickettsia risticii str.
Illinois]
Length = 469
Score = 222 bits (566), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 136/443 (30%), Positives = 225/443 (50%), Gaps = 32/443 (7%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
MS ++VWFR+D R +DNPAL + ++I V+I PG+ +R W+ SL
Sbjct: 1 MSISQIAVVWFRKDFRTDDNPALFEATKIRSIIPVYIIDENNCSIRKPGKAARIWIAESL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
L+ SL + S ++++ L ++ A L++N YDP D + + +
Sbjct: 61 IDLNKSL----DHHLKIYSGNTITILKTLLSRYKAEALYWNTTYDPEQDKYDEQIRTEIL 116
Query: 121 AQ--GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPP------ 172
I +R+FNA LL+EP ++ G + F AF K + +P P+ P
Sbjct: 117 KDHPNIIIRNFNARLLWEPSELRKKNGDTYRLFTAFKNKVMEEKLEPRFPIPSPPKIRYC 176
Query: 173 KRINSGDMSRCPSDTLVFEDES--EKGSNALLARAWSPGWSNADKALTTFINGPLIEYSK 230
K IN +++ + ++ + + E+G + + W +A L F++ L Y
Sbjct: 177 KEINIPELASVTPEKIIKDKDHCFEQG----IYKQWKISEQDAHVLLQEFVDKKLDNYHI 232
Query: 231 NRRKADSATTSFLSPHLHFGEVSVRKV-FHLVRIKQVSWANEGNKAGDESVNLFLKSIGL 289
+R TS LSP+++FG++S ++ F LVR S FL +
Sbjct: 233 DRDYPGKNGTSTLSPYINFGQISPNRIWFALVRFLPQSIQ-------------FLTELLW 279
Query: 290 REYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGW 349
RE++ + +P + L +F W D+ FK W +G TGYP+VDAG+REL +TG+
Sbjct: 280 REFAYNILNTNPELGSQNLQQKFDYFPWENDKQKFKLWSRGETGYPIVDAGIRELLSTGY 339
Query: 350 LHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRI 409
+H+R+R++V SF K L + W++G ++FW+ L+DAD S+ WQ+I+G+ D + RI
Sbjct: 340 MHNRVRMIVGSFLTKNLLIHWKYGEEFFWEYLVDADPASNTFNWQWIAGSGADSVPYFRI 399
Query: 410 DNPQFEGYKFDPNGEYVRRWLPE 432
+P + KFDP +Y +WLPE
Sbjct: 400 FSPTTQTKKFDPQLQYSDKWLPE 422
>gi|71903837|ref|YP_280640.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS6180]
gi|71802932|gb|AAX72285.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS6180]
Length = 477
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 143/491 (29%), Positives = 228/491 (46%), Gaps = 30/491 (6%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
S++WFRRDLR++D ALA + + + + VF + E+ + S +
Sbjct: 10 VSVMWFRRDLRIDDQKALAHAIASQSPTLCVFQFNKEQLNLLHSRNQSSFITSVLAFRKL 69
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
S+ L+ LL +K T ++FN+ +RD +A + GI
Sbjct: 70 LKCESIDLYLMYGDLMTCFEQLLTQLK--DWTDVYFNYDESGYGRLRDQKAAQFFKKNGI 127
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
AV ++ L+ ++ + GQP+ F ++ + P + P+ P
Sbjct: 128 AVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYP--KETPIKVELSQGRWLNLETP 185
Query: 185 SDTL----VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
D L F+DE + A K L FI L Y NR T
Sbjct: 186 DDVLRTVESFKDEKYQDVATF---------DEASKQLNRFIQDQLAAYHANRDFPAQLGT 236
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP L G + +R V+H VR N G + FLK + R++ + +
Sbjct: 237 SRLSPFLRIGAIGIRTVYHAVR-------QAPNSLGQAT---FLKELAWRDFYNMVYVAY 286
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P +P+ WV + +F+ W++G+TGYP+VDA M +L TGW+H+R+R++V+S
Sbjct: 287 PDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVAS 346
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L WR G +YF L+D D S+ GWQ+ + T D + RI NP +G +FD
Sbjct: 347 FLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFD 406
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P GE+++ +LP+L +P +++H PW P+ + ++ +G++YP PIV D AK R
Sbjct: 407 PKGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIV--DHAKQREQAI 464
Query: 481 LSEMWQQEAAS 491
W +E A
Sbjct: 465 AKYEWAKEKAK 475
>gi|347541255|ref|YP_004848681.1| deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania sp. NH8B]
gi|345644434|dbj|BAK78267.1| deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania sp. NH8B]
Length = 469
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 157/473 (33%), Positives = 247/473 (52%), Gaps = 38/473 (8%)
Query: 7 SIVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPE--EEGPYYPGRVSRWWLKHSLSHL 63
++ WFRRDLR++D+ AL A +R + VI VF++ + + P RV W HSL L
Sbjct: 5 ALCWFRRDLRLDDHAALHAALRHSERVICVFVFDRDILDHLPAQDHRVDFIW--HSLMEL 62
Query: 64 DSSLRSLGTSLV--TKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTA 121
LR+LG+ LV + R D + +L + GA+ ++ + Y+P + RD E L+
Sbjct: 63 KEHLRALGSDLVVASGRPVDCIPAL---AQEHGASTVWASRDYEPAACQRDAAVAERLSR 119
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSMPFDPDAPLLPPKRINS- 177
G + + +++E +V G+P+ F + W K L +PF A P R +
Sbjct: 120 HGTRLETVKDQVIFEQDEVLTVNGKPYTVFTPYRNAWLKKL-IPFFLQA--YPSTRYLNR 176
Query: 178 -GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
++ P +L ++ G L RA G + A F G IE+ + R
Sbjct: 177 LARLAETPLPSLADLGFTDTGLGRLGIRA---GMAGAAAVFADF--GQRIEHYQQWRDFP 231
Query: 237 SAT-TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
+A S+LS HL FG +S+R+ + Q +W + G +L + RE+ +
Sbjct: 232 AAKGVSYLSVHLRFGTISIRQ------LAQFAW-----QQGSAGATTWLNELIWREFYQQ 280
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+ +++P+ E + + D+ F AW GRTGYPLVDA MR+L +G++H+R+R
Sbjct: 281 LLWHYPHVVEESFKPEYRQLGFPNDDSLFVAWCAGRTGYPLVDAAMRQLEYSGYMHNRLR 340
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
+V +SF VK L + WRWG +YF + L+D DL ++ GWQ+ + T D + + RI NP +
Sbjct: 341 MVTASFLVKDLLVDWRWGERYFAEKLIDYDLAANNGGWQWAASTGCDAQPWFRIFNPVTQ 400
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
KFDP G+++RR++PELA L + IH PW A + G LG +YP PIV
Sbjct: 401 SQKFDPEGKFIRRYVPELAALDNKAIHAPWQAK---VLPGGFLLGRDYPRPIV 450
>gi|288919996|ref|ZP_06414317.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EUN1f]
gi|288348649|gb|EFC82905.1| Deoxyribodipyrimidine photo-lyase [Frankia sp. EUN1f]
Length = 472
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 146/447 (32%), Positives = 210/447 (46%), Gaps = 29/447 (6%)
Query: 10 WFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRS 69
W RRDLR++DNPAL A G V+A+F+ P P R++ +L L LD L
Sbjct: 3 WLRRDLRLDDNPALIAAAGQGPVLALFVLDEALCRPAGPVRLA--FLYRCLRDLDRRL-- 58
Query: 70 LGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSF 129
+ R+ D + V GA + + P RD R AL A G +R
Sbjct: 59 --AGRLCVRAGDPEQVVPAVAGEIGADVVHIAADHGPYGRRRDERVARALLAGGRELRRT 116
Query: 130 NADLLYEPWDVNDAQGQPFATFAAFW---------EKCLSMPFDPDAPLLPPKRINSGDM 180
+ EP + G P+ F F+ E P +PD L P ++ G
Sbjct: 117 GSAYAVEPGRLVKPDGSPYRVFTPFYRAWKAHGWPEPVAPAPTEPD--WLDPASLSGGSE 174
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
P L L PG A L F+ GPL +Y+++R + + T
Sbjct: 175 EIPPDPVL---------DGVTLP---PPGEQAAHDRLHAFLRGPLGDYARHRDEPAADVT 222
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP+L +G + R V VR + E+ F I RE+ + +
Sbjct: 223 SRLSPYLKWGCIHPRTVLDGVRTATAPSTDGATDGATEAAEKFRSEIAWREFYADVLAAN 282
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P S L L S+ F+AW+ GRTGYP+VDAGMR+L A GW+H+R+R++ +S
Sbjct: 283 PSSARSDLSETLARMSYEPPGESFEAWKWGRTGYPIVDAGMRQLLAEGWVHNRVRMIEAS 342
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L + W G +++ + L+D DL S+ GWQ+ +GT D + R+ NP +G +FD
Sbjct: 343 FVCKDLHVHWAHGARWYLERLVDGDLASNNHGWQWTAGTGTDAAPYFRVFNPVSQGRRFD 402
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNA 447
P+GEY+RRW+PEL LP E +H PW
Sbjct: 403 PDGEYIRRWVPELRGLPAELVHEPWKC 429
>gi|19551863|ref|NP_599865.1| deoxyribodipyrimidine photolyase [Corynebacterium glutamicum ATCC
13032]
gi|62389521|ref|YP_224923.1| deoxyribodipyrimidine photolyase [Corynebacterium glutamicum ATCC
13032]
gi|41324855|emb|CAF19337.1| DEOXYRIBODIPYRIMIDINE PHOTOLYASE [Corynebacterium glutamicum ATCC
13032]
gi|385142786|emb|CCH23825.1| deoxyribodipyrimidine photolyase [Corynebacterium glutamicum K051]
Length = 482
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 155/457 (33%), Positives = 223/457 (48%), Gaps = 50/457 (10%)
Query: 4 RGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHL 63
R +++WFR DLR+ DN AL G VI +FI +E G +RWW + SL+ L
Sbjct: 20 RSPTLLWFRDDLRLSDNAALKWAADHGPVIGLFI---DETINRSIGAAARWWREQSLNAL 76
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLY-DPLSLVRDHRAKEALTAQ 122
L G L+ +R+ + + L ++V + +N Y PL V D K+ L +
Sbjct: 77 AQDLSFYGVPLL-RRTGNPLEILPKIVSEMEVKAVTWNRRYHQPLCEV-DATLKKNLRDK 134
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAF----WEKCLSMPFDPDAPLLP-PKRINS 177
GI V S LL EPW+V+ A G P+ F F WE ++ +P P +
Sbjct: 135 GIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARVHAYETVKNNVPVPSHLTG 194
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
+ P + E E S L+ +PG NA + L F+ L +Y + R
Sbjct: 195 PEDVELP----ILEMEQPFWSTTLVKEC-APGEKNASEKLFDFLEH-LQDYPQARDSLAR 248
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
+ TS LS HL FGE+S+ +V WA E E LFLK + R+++ +
Sbjct: 249 SATSKLSAHLRFGEISIHRV----------WA-ETAAIDSEGTELFLKELLWRDFAWHRL 297
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGY----------------------FKAWRQGRTGYP 335
+ P+ + + F W D AWR G+TG P
Sbjct: 298 YALPHMDTQNVRMQFNRFGWSWDPSEKDKLNTPSTPLIPTKADQFHEDLAAWRAGKTGIP 357
Query: 336 LVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQY 395
LVDAGMRELWATG +H+R+R+VV+SF K LQ+ WR G ++FW+TL+DAD S+A WQ+
Sbjct: 358 LVDAGMRELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQW 417
Query: 396 ISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPE 432
+G+ D + RI NP + KFDP+ Y+RRW+PE
Sbjct: 418 AAGSGDDASPYFRIFNPVTQAKKFDPDETYIRRWVPE 454
>gi|94994739|ref|YP_602837.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10750]
gi|94548247|gb|ABF38293.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS10750]
Length = 477
Score = 222 bits (565), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 142/491 (28%), Positives = 228/491 (46%), Gaps = 30/491 (6%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
S++WFRRDLR++D ALA + + + + VF + E+ + S S+
Sbjct: 10 VSVMWFRRDLRIDDQKALAHVIASQSPTLCVFQFNKEQLNLLHSRNQSS--FITSVLAFR 67
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
L+ G L + + T ++FN+ +RD +A + GI
Sbjct: 68 KLLKCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGI 127
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
AV ++ L+ ++ + GQP+ F ++ + P + P+ P
Sbjct: 128 AVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYP--KETPIKVELSQGRWLNLETP 185
Query: 185 SDTL----VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
D L F+DE + A K L FI L Y NR T
Sbjct: 186 DDVLRTVESFKDEKYQDVATF---------DEASKQLNRFIQDQLAAYHANRDFPAQLGT 236
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP L G + +R V+H VR N G + FLK + R++ + +
Sbjct: 237 SRLSPFLRIGAIGIRTVYHAVR-------QAPNSLGQAT---FLKELAWRDFYNMVYVAY 286
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P +P+ WV + +F+ W++G+TGYP+VDA M +L TGW+H+R+R++V+S
Sbjct: 287 PDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVAS 346
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L WR G +YF L+D D S+ GWQ+ + T D + RI NP +G +FD
Sbjct: 347 FLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFD 406
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P GE+++ +LP+L +P +++H PW P+++ ++ +G++YP PIV D AK R
Sbjct: 407 PKGEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIV--DHAKQREQAI 464
Query: 481 LSEMWQQEAAS 491
W +E A
Sbjct: 465 AKYEWAKEKAK 475
>gi|386363038|ref|YP_006072369.1| deoxyribodipyrimidine photo-lyase [Streptococcus pyogenes Alab49]
gi|421892494|ref|ZP_16323147.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes NS88.2]
gi|350277447|gb|AEQ24815.1| deoxyribodipyrimidine photo-lyase [Streptococcus pyogenes Alab49]
gi|379981746|emb|CCG26869.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes NS88.2]
Length = 469
Score = 221 bits (564), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 142/491 (28%), Positives = 227/491 (46%), Gaps = 30/491 (6%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
S++WFRRDLR++D ALA + + + + VF + E+ + S S+
Sbjct: 2 VSVMWFRRDLRIDDQKALAHAIASQSPTLCVFQFNKEQLNLLHSRNQSS--FITSVLAFR 59
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
L+ G L + + T ++FN+ +RD +A + GI
Sbjct: 60 KLLKCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGI 119
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
AV ++ L+ ++ + GQP+ F ++ + P + P+ P
Sbjct: 120 AVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYP--KETPIKVELSQGRWLNLETP 177
Query: 185 SDTL----VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
D L F+DE + A K L FI L Y NR T
Sbjct: 178 DDVLRTVESFKDEKYQDVATF---------DEASKQLNRFIQDQLAAYHANRDFPAQLGT 228
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP L G + +R V+H VR N G + FLK + R++ + +
Sbjct: 229 SRLSPFLRIGAIGIRTVYHAVR-------QAPNSLGQAT---FLKELAWRDFYNMVYVAY 278
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P +P+ WV + +F+ W++G+TGYP+VDA M +L TGW+H+R+R++V+S
Sbjct: 279 PDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVAS 338
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L WR G +YF L+D D S+ GWQ+ + T D + RI NP +G +FD
Sbjct: 339 FLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFD 398
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P GE+++ +LP+L +P +++H PW P+ + ++ +G++YP PIV D AK R
Sbjct: 399 PKGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIV--DHAKQREQAI 456
Query: 481 LSEMWQQEAAS 491
W +E A
Sbjct: 457 AKYEWAKEKAK 467
>gi|148657549|ref|YP_001277754.1| deoxyribodipyrimidine photolyase [Roseiflexus sp. RS-1]
gi|148569659|gb|ABQ91804.1| Deoxyribodipyrimidine photo-lyase type I [Roseiflexus sp. RS-1]
Length = 491
Score = 221 bits (564), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 153/486 (31%), Positives = 232/486 (47%), Gaps = 42/486 (8%)
Query: 8 IVWFRRDLRVEDNPAL--AAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
I WFRRDLR+ DNPAL AA G VI +FI G ++ +L LD+
Sbjct: 4 IHWFRRDLRLRDNPALSGAAARSGGRVIPLFILDDAILHAPRTGMARVAFMIAALRDLDA 63
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SLR+ G+ LV +R S L ++V ATGA + +N Y P + RD + L +A
Sbjct: 64 SLRARGSRLVVRRGRPS-DVLRDLVGATGAVGVSWNRDYTPFARQRDQHIEAMLRDLNVA 122
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSMPFDP-----DAPLLPPKRINS 177
++ EP DV G+P+ + + W + D + P+L P
Sbjct: 123 TFIAADAVIMEPDDVRTDDGRPYTVYTPYRRRWRALVEQRRDDVLRAYEPPVLQPVPDGV 182
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFIN----GPLIEYSKNRR 233
D+ + L +++ R + G + L F++ + Y+ R
Sbjct: 183 ADLPIPDNPDL---------DVSVIQRIPAGGETTGAARLAAFLDPRATHGIAGYADGRN 233
Query: 234 KADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDE-----------SVNL 282
TS LSP+L FG V+ R + N ++AG+E S+
Sbjct: 234 LLAEPATSRLSPYLRFGCVAPRA-------ALRAALNLLDRAGEEQDAECAATLTRSIET 286
Query: 283 FLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMR 342
++ + R++ + ++HP+ W D F AW++GRTGYP+VDA MR
Sbjct: 287 WIGELAWRDFYYQILWHHPHVLRSAFKPQYDALEWENDPALFDAWKEGRTGYPVVDAAMR 346
Query: 343 ELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPD 402
+L W+H+R R++V+SF K L + WRWG +YF L+D D ++ GWQ+ +GT D
Sbjct: 347 QLNREAWMHNRARMIVASFLTKDLLIDWRWGERYFMQQLVDGDHAANNGGWQWSAGTGTD 406
Query: 403 GRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSN 462
+ + RI NP +G FDP G YVRR+LPEL +P +IH PW P + Q G+ +G +
Sbjct: 407 AQPYFRIFNPVSQGQTFDPKGAYVRRYLPELEAVPDRYIHAPWTMPYAEQQRCGVIIGRD 466
Query: 463 YPFPIV 468
YP P+V
Sbjct: 467 YPAPVV 472
>gi|417969890|ref|ZP_12610826.1| deoxyribodipyrimidine photolyase [Corynebacterium glutamicum S9114]
gi|344045994|gb|EGV41663.1| deoxyribodipyrimidine photolyase [Corynebacterium glutamicum S9114]
Length = 468
Score = 221 bits (564), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 155/457 (33%), Positives = 223/457 (48%), Gaps = 50/457 (10%)
Query: 4 RGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHL 63
R +++WFR DLR+ DN AL G VI +FI +E G +RWW + SL+ L
Sbjct: 6 RSLTLLWFRDDLRLSDNAALKWAADHGPVIGLFI---DETINRSIGAAARWWREQSLNAL 62
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLY-DPLSLVRDHRAKEALTAQ 122
L G L+ +R+ + + L ++V + +N Y PL V D K+ L Q
Sbjct: 63 AQDLSFYGVPLL-RRTGNPLEILPKIVSEMEVKAVTWNRRYHQPLCEV-DATLKKNLRDQ 120
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAF----WEKCLSMPFDPDAPLLP-PKRINS 177
GI V S LL EPW+V+ A G P+ F F WE ++ +P P +
Sbjct: 121 GIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARGHAYETVKNNVPVPSHLTG 180
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
+ P + E E + L+ +PG NA + L F+ L +Y + R
Sbjct: 181 PEGVELP----IPEMEQPFWATTLVKEC-APGEKNASEKLFDFLEH-LQDYPQARDSLAR 234
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
+ TS LS HL FGE+S+ +V WA E E LFLK + R+++ +
Sbjct: 235 SATSKLSAHLRFGEISIHRV----------WA-ETAAIDSEGTELFLKELLWRDFAWHRL 283
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGY----------------------FKAWRQGRTGYP 335
+ P+ + + F W D AWR G+TG P
Sbjct: 284 YALPHMDTQNVRMQFNRFGWSWDPSEKDKLNTPSTPLLPTKADQFHEDLAAWRAGKTGIP 343
Query: 336 LVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQY 395
LVDAGMRELWATG +H+R+R+VV+SF K LQ+ WR G ++FW+TL+DAD S+A WQ+
Sbjct: 344 LVDAGMRELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLIDADPASNAFNWQW 403
Query: 396 ISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPE 432
+G+ D + RI NP + KFDP+ Y+RRW+PE
Sbjct: 404 AAGSGDDASPYFRIFNPVTQAKKFDPDETYIRRWVPE 440
>gi|19746457|ref|NP_607593.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS8232]
gi|306827047|ref|ZP_07460345.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes ATCC
10782]
gi|19748660|gb|AAL98092.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
MGAS8232]
gi|304430793|gb|EFM33804.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes ATCC
10782]
Length = 469
Score = 221 bits (564), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 142/491 (28%), Positives = 228/491 (46%), Gaps = 30/491 (6%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
S++WFRRDLR++D ALA + + + + VF + E+ + S S+
Sbjct: 2 VSVMWFRRDLRIDDQKALAHVIASQSPTLCVFQFNKEQLNLLHSRNQSS--FITSVLAFR 59
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
L+ G L + + T ++FN+ +RD +A + GI
Sbjct: 60 KLLKCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGI 119
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
AV ++ L+ ++ + GQP+ F ++ + P + P+ P
Sbjct: 120 AVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYP--KETPIKVELSQGRWLNLETP 177
Query: 185 SDTL----VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
D L F+DE + A K L FI L Y NR T
Sbjct: 178 DDVLRTVESFKDEKYQDVATF---------DEASKQLNRFIQDQLAAYHANRDFPAQLGT 228
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP L G + +R V+H VR N G + FLK + R++ + +
Sbjct: 229 SRLSPFLRIGAIGIRTVYHAVR-------QAPNSLGQAT---FLKELAWRDFYNMVYVAY 278
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P +P+ WV + +F+ W++G+TGYP+VDA M +L TGW+H+R+R++V+S
Sbjct: 279 PDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVAS 338
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L WR G +YF L+D D S+ GWQ+ + T D + RI NP +G +FD
Sbjct: 339 FLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFD 398
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P GE+++ +LP+L +P +++H PW P+++ ++ +G++YP PIV D AK R
Sbjct: 399 PKGEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIV--DHAKQREQAI 456
Query: 481 LSEMWQQEAAS 491
W +E A
Sbjct: 457 AKYEWAKEKAK 467
>gi|254476074|ref|ZP_05089460.1| deoxyribodipyrimidine photolyase [Ruegeria sp. R11]
gi|214030317|gb|EEB71152.1| deoxyribodipyrimidine photolyase [Ruegeria sp. R11]
Length = 478
Score = 221 bits (564), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 147/430 (34%), Positives = 218/430 (50%), Gaps = 20/430 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I W RRDLR+ DN AL A V +GA V+ VFI+ ++E G R+ L L HL
Sbjct: 12 IWWIRRDLRLSDNAALTAAVDSGAPVLPVFIFDSQDEDL---GAAPRFRLGLGLEHLAQR 68
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L LG+ L+ +R + ++ L +++K TGA + + YDP S RD KE L +QG+A
Sbjct: 69 LERLGSRLILRRGS-ALQVLQDLLKETGAQAVHWTRAYDPASRARDTLIKETLKSQGVAA 127
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM--SRCP 184
S++ +LL+EPW V G + + FW D L+ P I + + +
Sbjct: 128 HSYSGNLLFEPWTVETKTGGMYRVYTPFWRAVRGR--DVPGLLVAPGTIPAPEQWPNSDQ 185
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
DT +G+ L A G A L FI + Y R TS LS
Sbjct: 186 LDTWKLAAAMRRGAPVLAAHC-RVGEEAAQDRLDEFIETGIARYQDLRDLPAVDGTSGLS 244
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
+L +GE+S ++++H E G FLK + RE++ ++ F+ P+
Sbjct: 245 ENLAWGEISPQRMWHR--------GAEAMAQGAAGAETFLKEVVWREFAYHLMFHTPHIL 296
Query: 305 ERPLLGHLKFFSWVVDEGY--FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ + F+W +E AW+QGRTGY VDA MREL+ TG +H+R R++V+SF
Sbjct: 297 TKSWREEWQSFAWSENEDTPEVLAWKQGRTGYRFVDAAMRELYVTGKMHNRARMIVASFL 356
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
K + WR G K+F L+D D S+A+GWQ+++G+ PD F R+ NP + KFDP
Sbjct: 357 TKHMLTHWRIGQKWFEHCLVDWDPASNAMGWQWVAGSGPDAAPFFRVFNPDGQLDKFDPK 416
Query: 423 GEYVRRWLPE 432
G Y +W+ E
Sbjct: 417 GRYQAQWIAE 426
>gi|85374236|ref|YP_458298.1| hypothetical protein ELI_07045 [Erythrobacter litoralis HTCC2594]
gi|84787319|gb|ABC63501.1| hypothetical protein ELI_07045 [Erythrobacter litoralis HTCC2594]
Length = 463
Score = 221 bits (564), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 159/495 (32%), Positives = 243/495 (49%), Gaps = 57/495 (11%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IVW RRDLR+ DNPAL +AG V+AV++ E + G +RWWL HSL L S
Sbjct: 6 IVWLRRDLRMADNPALYHAAKAGPVVAVYVLDDERPKDHKLGGAARWWLHHSLESLGKSF 65
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+ + +V +R D+V L V A GA + N Y+P R + A+ + ++
Sbjct: 66 GARNSRIVLRRG-DAVEELKTVANAVGAETVHANRHYEPWW-----RKAQGELAEELELK 119
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS---------- 177
++ + L+ P V G P+ + F K + P + P+ ++S
Sbjct: 120 LYDGNYLFPPGHVTTGSGDPYKIYTPF-SKAMLQEMPPRDEVPEPETLSSPGEWPASDDL 178
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
GD + P+ + L W+ G A + L + + + +Y R
Sbjct: 179 GDWNLLPT---------KPDWAGGLRDFWTVGEDAAHERLDWWSD-EVDKYDDGRNMPSV 228
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
TS +SPHLH GE+S +++H + K+ ++G K + K + R+Y++ +
Sbjct: 229 DETSQMSPHLHHGEISPVQIWHRFKDKR----SDGWKT-------YEKELIWRDYAQNVI 277
Query: 298 FNHP-YSHERPLLGHLKFFSW-------VVDEGYFKAWRQGRTGYPLVDAGMRELWATGW 349
P Y E G +W ++ E K W++G+TGYP+VDAGMR+LW TGW
Sbjct: 278 CQFPAYPKESYRDGWDADMAWRNPNRGHIIQEE-LKRWQKGQTGYPIVDAGMRQLWQTGW 336
Query: 350 LHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRI 409
+H+R+R++ +SF +K L + WR G K+FWDTL+DAD S+ WQ++SGT D F RI
Sbjct: 337 MHNRVRMIAASFLIKHLLIDWRHGEKWFWDTLVDADYASNGTNWQWVSGTGVDSNMFSRI 396
Query: 410 DNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVR 469
P + KFD G Y+R ++PELA LP E IH P + G + +YP I+
Sbjct: 397 MAPLTQSEKFDAAG-YIREYVPELADLPDETIHDP--------EEHGCK-PDDYPSKIIA 446
Query: 470 IDAAKCRLDEALSEM 484
+ R EA SE
Sbjct: 447 HKEGRERALEAYSEF 461
>gi|21323395|dbj|BAB98023.1| Deoxyribodipyrimidine photolyase [Corynebacterium glutamicum ATCC
13032]
Length = 468
Score = 221 bits (564), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 155/457 (33%), Positives = 223/457 (48%), Gaps = 50/457 (10%)
Query: 4 RGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHL 63
R +++WFR DLR+ DN AL G VI +FI +E G +RWW + SL+ L
Sbjct: 6 RSPTLLWFRDDLRLSDNAALKWAADHGPVIGLFI---DETINRSIGAAARWWREQSLNAL 62
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLY-DPLSLVRDHRAKEALTAQ 122
L G L+ +R+ + + L ++V + +N Y PL V D K+ L +
Sbjct: 63 AQDLSFYGVPLL-RRTGNPLEILPKIVSEMEVKAVTWNRRYHQPLCEV-DATLKKNLRDK 120
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAF----WEKCLSMPFDPDAPLLP-PKRINS 177
GI V S LL EPW+V+ A G P+ F F WE ++ +P P +
Sbjct: 121 GIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARVHAYETVKNNVPVPSHLTG 180
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
+ P + E E S L+ +PG NA + L F+ L +Y + R
Sbjct: 181 PEDVELP----ILEMEQPFWSTTLVKEC-APGEKNASEKLFDFLEH-LQDYPQARDSLAR 234
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
+ TS LS HL FGE+S+ +V WA E E LFLK + R+++ +
Sbjct: 235 SATSKLSAHLRFGEISIHRV----------WA-ETAAIDSEGTELFLKELLWRDFAWHRL 283
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGY----------------------FKAWRQGRTGYP 335
+ P+ + + F W D AWR G+TG P
Sbjct: 284 YALPHMDTQNVRMQFNRFGWSWDPSEKDKLNTPSTPLIPTKADQFHEDLAAWRAGKTGIP 343
Query: 336 LVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQY 395
LVDAGMRELWATG +H+R+R+VV+SF K LQ+ WR G ++FW+TL+DAD S+A WQ+
Sbjct: 344 LVDAGMRELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQW 403
Query: 396 ISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPE 432
+G+ D + RI NP + KFDP+ Y+RRW+PE
Sbjct: 404 AAGSGDDASPYFRIFNPVTQAKKFDPDETYIRRWVPE 440
>gi|383480261|ref|YP_005389155.1| deoxyribodipyrimidine photolyase protein PhrB [Streptococcus
pyogenes MGAS15252]
gi|383494243|ref|YP_005411919.1| deoxyribodipyrimidine photolyase protein PhrB [Streptococcus
pyogenes MGAS1882]
gi|378928251|gb|AFC66457.1| deoxyribodipyrimidine photolyase protein PhrB [Streptococcus
pyogenes MGAS15252]
gi|378929970|gb|AFC68387.1| deoxyribodipyrimidine photolyase protein PhrB [Streptococcus
pyogenes MGAS1882]
Length = 469
Score = 221 bits (564), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 141/491 (28%), Positives = 228/491 (46%), Gaps = 30/491 (6%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
S++WFRRDLR++D ALA + + + + VF + E+ + S S+
Sbjct: 2 VSVMWFRRDLRIDDQKALAHAIASQSPTLCVFQFNKEQLNLLHSRNQSS--FITSVLAFR 59
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
L+ G L + + T ++FN+ +RD +A + GI
Sbjct: 60 KLLKCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGI 119
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
AV ++ L+ ++ + GQP+ F ++ + P + P+ P
Sbjct: 120 AVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYP--KETPIKVELSQGRWLNLETP 177
Query: 185 SDTL----VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
D L F+D+ + A K L FI L Y NR T
Sbjct: 178 DDVLRTVESFKDKKYQDVATF---------DEASKQLNRFIQDQLAAYHANRDFPAQLGT 228
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP L G + +R V+H VR N G + FLK + R++ + +
Sbjct: 229 SRLSPFLRIGAIGIRTVYHAVR-------QAPNSLGQAT---FLKELAWRDFYNMVYVAY 278
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P +P+ WV + +F+ W++G+TGYP+VDA M +L TGW+H+R+R++V+S
Sbjct: 279 PDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVAS 338
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L WR G +YF L+D D S+ GWQ+ + T D + RI NP +G +FD
Sbjct: 339 FLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFD 398
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P GE+++ +LP+L +P +++H PW P+++ ++ +G++YP PIV D AK R
Sbjct: 399 PKGEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIV--DHAKQREQAI 456
Query: 481 LSEMWQQEAAS 491
W +E A
Sbjct: 457 AKYEWAKEKAK 467
>gi|21910695|ref|NP_664963.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS315]
gi|28895615|ref|NP_801965.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes SSI-1]
gi|21904898|gb|AAM79766.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
MGAS315]
gi|28810864|dbj|BAC63798.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
SSI-1]
Length = 469
Score = 221 bits (563), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 142/491 (28%), Positives = 227/491 (46%), Gaps = 30/491 (6%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
S++WFRRDLR++D ALA + + + + VF + E+ + S S+
Sbjct: 2 VSVMWFRRDLRIDDQKALAHAIASQSPTLCVFQFNNEQLNLLHSRNQSS--FITSVLAFR 59
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
L+ G L + + T ++FN+ +RD +A + GI
Sbjct: 60 KLLKCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGI 119
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
AV ++ L+ ++ + GQP+ F ++ + P + P+ P
Sbjct: 120 AVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYP--KETPIKVELSQGRWLNLETP 177
Query: 185 SDTL----VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
D L F+DE + A K L FI L Y NR T
Sbjct: 178 DDVLRTVESFKDEKYQDVATF---------DEASKQLNRFIQDQLAAYHANRDFPAQLGT 228
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP L G + +R V+H VR N G + FLK + R++ + +
Sbjct: 229 SRLSPFLRIGAIGIRTVYHAVR-------QAPNSLGQAT---FLKELAWRDFYNMVYVAY 278
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P +P+ WV + +F+ W++G+TGYP+VDA M +L TGW+H+R+R++V+S
Sbjct: 279 PDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVAS 338
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L WR G +YF L+D D S+ GWQ+ + T D + RI NP +G +FD
Sbjct: 339 FLTKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFD 398
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P GE+++ +LP+L +P +++H PW P+ + ++ +G++YP PIV D AK R
Sbjct: 399 PKGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIV--DHAKQREQAI 456
Query: 481 LSEMWQQEAAS 491
W +E A
Sbjct: 457 AKYEWAKEKAK 467
>gi|406707087|ref|YP_006757439.1| FAD-binding protein, DNA photolyase family,DNA photolyase [alpha
proteobacterium HIMB59]
gi|406652863|gb|AFS48262.1| FAD-binding protein, DNA photolyase family,DNA photolyase [alpha
proteobacterium HIMB59]
Length = 447
Score = 221 bits (563), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 133/405 (32%), Positives = 204/405 (50%), Gaps = 17/405 (4%)
Query: 34 AVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRS-LGTSLVTKRSTDSVSSLLEVVKA 92
A+F++ + G WWL SL L S ++ G SL+ ++ L +++K
Sbjct: 11 ALFVYIYDSVECNATGEAGHWWLHESLKQLQESYKARFGASLIVLEGK-ALDVLQKLIKK 69
Query: 93 TGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFA 152
Q+ +N LY P ++ RD K+AL QG+ V +FN LL EPW+V + GQ F F
Sbjct: 70 YQIHQVLWNRLYSPETIKRDTIIKKALQEQGVDVETFNGHLLNEPWEVQNNSGQYFKVFT 129
Query: 153 AFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSN 212
+W K + L K IN + L+F +K ++ W+PG
Sbjct: 130 PYWRKAFEVYQSKKEKLEKIKSINV----LSHQENLIFNFLPKKKWYQKFSKYWTPGEKA 185
Query: 213 ADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKV-FHLVRIKQVSWANE 271
A L+ ++ + Y R + D TS LSP+L FGE+S R V ++++ K +S
Sbjct: 186 AQDQLSRYLKTDIDIYKDARDRPDLDQTSKLSPYLRFGEISPRTVVLNILKSKNLS---- 241
Query: 272 GNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGR 331
SV +L IG RE+S + + P+ + F W W+ G+
Sbjct: 242 ------TSVLTYLSEIGWREFSYSLLYYSKNLSSVPINLKFQNFPWRKSVKDLDLWKSGK 295
Query: 332 TGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDAL 391
TG PLVDA MR+++ GW+H+R+R+VV SF VK L L W G +YF +TLLD D S+A
Sbjct: 296 TGIPLVDAAMRQIYEKGWMHNRLRMVVGSFLVKNLLLNWTLGEQYFQETLLDYDEASNAA 355
Query: 392 GWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARL 436
GWQ+I+G D + R+ NP + +FDP +++ ++LP+L L
Sbjct: 356 GWQWIAGCGADASPYFRVFNPILQSERFDPQAKFILQYLPQLQIL 400
>gi|388567569|ref|ZP_10154000.1| deoxyribodipyrimidine photo-lyase [Hydrogenophaga sp. PBC]
gi|388265174|gb|EIK90733.1| deoxyribodipyrimidine photo-lyase [Hydrogenophaga sp. PBC]
Length = 496
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 158/489 (32%), Positives = 248/489 (50%), Gaps = 39/489 (7%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVI-AVFIWAPEEEGPYYPGRVSRWWLKHS 59
MS ++WFRRDLR DN AL +R + VF++ E P +++ S
Sbjct: 1 MSHFDTGLMWFRRDLRANDNAALHHALRHCRRLWCVFVFDREILDPLPRADRRVEFIRES 60
Query: 60 LSHLDSSLRSLG-------TSLVT--KRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLV 110
L LD+ LR LG T L+ R+ ++ +L + + GA +F NH +P +L
Sbjct: 61 LVALDARLRELGAEHGQANTGLIVLHDRAQHAIPALAQRL---GAQAVFANHDDEPAALT 117
Query: 111 RDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSMPFDPDA 167
RD + AL QG+ +R+ +++E +V + F F + W K L+ PF A
Sbjct: 118 RDAQVLGALAHQGVLLRTHKDHVIFERREVLTQAERAFGVFTPYKNAWLKALT-PFHLKA 176
Query: 168 PLLPPKRINSGDMSRCPSDT-----LVFEDESEKGSNALLARAWSPGWSNADKALTTFIN 222
P ++G ++ P + E E+ + A L G A + F+
Sbjct: 177 Y---PITKHAGALAPLPEGLSRPVPTLAEIGFERTNLAQLP--LPTGEDGAHQLFDDFLQ 231
Query: 223 GPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNL 282
+ Y + R S+LS HL FG VS+R + S A+E + G+ +
Sbjct: 232 R-IDRYDEARDYPAIKGPSYLSAHLRFGTVSIRAL--------ASIAHELHAQGNPGAST 282
Query: 283 FLKSIGLREYSRYMSFNHPY---SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDA 339
+L + R++ + N P+ S +P +++ + FKAW +GRTGYPLVDA
Sbjct: 283 WLSELIWRDFYHQILSNFPHVAQSAFKPAYDAVRYEHGKAADALFKAWCEGRTGYPLVDA 342
Query: 340 GMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGT 399
M ++ TG++H+R+R+VV+SF VK L + W+WG +YF + L+D DL ++ GWQ+ S +
Sbjct: 343 AMAQINQTGYMHNRLRMVVASFLVKDLGIHWQWGERYFAEHLIDYDLAANNGGWQWASSS 402
Query: 400 IPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIEL 459
D + + RI NP + +FDP G ++RR+LP+LA LP IH PW A L AAG+E+
Sbjct: 403 GCDAQPWFRIFNPVTQSERFDPQGRFIRRYLPQLAELPDHAIHAPWKATPVELAAAGVEI 462
Query: 460 GSNYPFPIV 468
G +YP P+V
Sbjct: 463 GVHYPAPLV 471
>gi|413922772|gb|AFW62704.1| hypothetical protein ZEAMMB73_163109 [Zea mays]
Length = 199
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 125/192 (65%), Positives = 149/192 (77%), Gaps = 7/192 (3%)
Query: 1 MSGRG----CSIVWFRRDLRVEDNPALAAGVRA-GAVIAVFIWAPEEEGPYYPGRVSRWW 55
MSG G ++VWFRRDLRVEDNPALAA R G V+ ++W+PEE+GPYYPGRVSRWW
Sbjct: 8 MSGGGEPGVRTVVWFRRDLRVEDNPALAAAARTAGEVVPAYVWSPEEDGPYYPGRVSRWW 67
Query: 56 LKHSLSHLDSSLRSLGTS-LVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHR 114
L SL HLD+SLR LG LVT+RS+D+V +L+++V++TGAT LFFN LYDPLSLVRDHR
Sbjct: 68 LSQSLKHLDASLRRLGACRLVTRRSSDAVVALIDLVRSTGATHLFFNRLYDPLSLVRDHR 127
Query: 115 AKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKR 174
KE L+A+GI V+SFNADLLYEPW+V D G PF FA FW +CL M DP APLLPPKR
Sbjct: 128 VKEQLSAEGITVQSFNADLLYEPWEVLDDDGFPFTMFAPFWNRCLCM-PDPAAPLLPPKR 186
Query: 175 INSGDMSRCPSD 186
INSG P++
Sbjct: 187 INSGIQMHLPTE 198
>gi|103486487|ref|YP_616048.1| deoxyribodipyrimidine photolyase [Sphingopyxis alaskensis RB2256]
gi|98976564|gb|ABF52715.1| Deoxyribodipyrimidine photo-lyase type I [Sphingopyxis alaskensis
RB2256]
Length = 457
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 156/435 (35%), Positives = 223/435 (51%), Gaps = 25/435 (5%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S++W R+DLRV D+PAL A + GAVI VFI E G + G RWWL HSL+ L +
Sbjct: 3 ASLLWLRQDLRVHDHPALLAAIAGGAVIPVFILDDETPGTWKIGAAQRWWLHHSLTALGA 62
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
SL+ G+ L+ +R + + L + + TG+ ++ H Y+P + E IA
Sbjct: 63 SLKKRGSKLILRRGA-AHTELARIARETGSRRIHATHAYEPWW-----KHSEERLPTDIA 116
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
+ + + L P + + QG + F ++ + L P S S
Sbjct: 117 LVLHDGNYLAAPDSIVNGQGARYRVFTPWYRRLLDHM--PPTLPQAAPDAVPAPASWPRS 174
Query: 186 DTLVFEDESEKGSN-ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
D L D N A AW PG A +A +++ + +Y R TS LS
Sbjct: 175 DDLADWDLLPTRPNWAAGFGAWCPGEKGAWRAARDWLDA-IGDYKARRDYPAQPATSRLS 233
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
PHLHFGE+S R ++H + E + AG ES + +G RE+ + P
Sbjct: 234 PHLHFGEISPRALWHAI--------GERDDAGAES---YRSELGWREHGINLVDQMPDYA 282
Query: 305 ERPLLGHLKFFSWVVD---EGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+R F+W + F AW +GRTGYP+VDAGMRELW TGW+H+R+R+V +SF
Sbjct: 283 DRNGRELFDRFAWRTGADADRDFAAWTRGRTGYPVVDAGMRELWQTGWMHNRVRMVTASF 342
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L + WR G ++FWDTLLDADL S+A+ WQY++GT D F RI +P + +F
Sbjct: 343 LVKHLLIDWRRGERWFWDTLLDADLGSNAMNWQYVAGTGVDAPVFSRIMSPLLQCERF-A 401
Query: 422 NGEYVRRWLPELARL 436
+YVR +PELA L
Sbjct: 402 MADYVRAHVPELAHL 416
>gi|359401211|ref|ZP_09194182.1| deoxyribodipyrimidine photo-lyase [Novosphingobium
pentaromativorans US6-1]
gi|357597460|gb|EHJ59207.1| deoxyribodipyrimidine photo-lyase [Novosphingobium
pentaromativorans US6-1]
Length = 469
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 154/443 (34%), Positives = 218/443 (49%), Gaps = 29/443 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IVWFRRDLR+ D ALAA G V+ V++ E G SRWWL +SL+ LD++L
Sbjct: 18 IVWFRRDLRLSDQAALAAAAAQGPVLPVYVLDDETPRHRAMGGASRWWLHYSLASLDATL 77
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
R G+ L+ ++ L + + TGA+++ H Y+P R E + + +
Sbjct: 78 REKGSRLILRKGK-CEDVLAALAQETGASEVHALHHYEPWW-----RNAEKSVGKRLTLH 131
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGD---MSRCP 184
+ + L P V G P+ + FW + L P P P+ I S D S
Sbjct: 132 LHHGNYLAPPGTVTTGSGSPYKIYTPFW-RALIERMPPPEPQRRPQNIASPDSWPASDAL 190
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
D + + + + W PG A K L F + Y R TSFLS
Sbjct: 191 DDWGLLPTQPDWAGG--MRDMWEPGEEGAKKRLRAFADHA-SHYEGQRNLPAVEGTSFLS 247
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
PHLHFGEVS +V+H + SV FL IG R+Y++ + P
Sbjct: 248 PHLHFGEVSPAQVWH------------ATSSAGGSVATFLGEIGWRDYAQNVIVQFPDYG 295
Query: 305 ERPLLGHLKFFSWVVDEGY---FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
R F W + +AW+ G TGYP+VDAGMR+LW TGW+H+R+R++ +SF
Sbjct: 296 SRSARDTFDHFPWRSGKEAQEDLRAWQMGMTGYPIVDAGMRQLWHTGWMHNRVRMIAASF 355
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
+K L + W+ G ++FWDTL+DAD S+A+ WQ+ +G+ D F RI P + KFD
Sbjct: 356 LIKHLLIDWQEGEQWFWDTLVDADYASNAVNWQWTAGSGVDSNMFVRIMAPLTQSEKFD- 414
Query: 422 NGEYVRRWLPELARLPTEWIHHP 444
Y+R W+PELA LP IH P
Sbjct: 415 AAAYIREWVPELADLPDAEIHDP 437
>gi|224823842|ref|ZP_03696951.1| Deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania ferrooxidans
2002]
gi|224604297|gb|EEG10471.1| Deoxyribodipyrimidine photo-lyase [Pseudogulbenkiania ferrooxidans
2002]
Length = 469
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 163/495 (32%), Positives = 259/495 (52%), Gaps = 41/495 (8%)
Query: 7 SIVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPE--EEGPYYPGRVSRWWLKHSLSHL 63
++ WFRRDLR++D+ AL A +R + V+ VF++ + + P RV W HSL L
Sbjct: 5 ALCWFRRDLRLDDHAALYAALRHSERVVCVFVFDRDILKHLPAQDRRVDFIW--HSLVEL 62
Query: 64 DSSLRSLGTSLV--TKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTA 121
L +LG+ LV + R D + +L + GA+ ++ + Y+P + +RD E L+
Sbjct: 63 KEQLCALGSDLVVVSGRPVDCIPAL---AQEHGASTVWASRDYEPAACLRDAAVAERLSR 119
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSMPFDPDAPLLPPKRINS- 177
G + + +++E +V +P+ F + W K L+ PF A P R +
Sbjct: 120 HGTRLETVKDQVIFEQDEVLTVNSKPYTVFTPYRNAWLKKLT-PFFLQA--YPSTRYLNR 176
Query: 178 -GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
++ P +L ++ G L RA G + A T F G IE+ + R
Sbjct: 177 LARLAETPLPSLADLGFTDTGLGRLGIRA---GMAGAAAVFTDF--GQRIEHYQQWRDFP 231
Query: 237 SAT-TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
+A S+LS HL FG +S+R+ + Q +W + G +L + RE+ +
Sbjct: 232 AAKGVSYLSVHLRFGTISIRQ------LAQFAW-----QQGSAGATTWLSELIWREFYQQ 280
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+ +++P+ E + + DE F AW GRTGYPLVDA MR+L +G++H+R+R
Sbjct: 281 LLWHYPHVVEESFKPEYRQLGFPNDETLFAAWCAGRTGYPLVDAAMRQLAYSGYMHNRLR 340
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
+V +SF VK L + WRWG +YF + L+D DL ++ GWQ+ + T D + + RI NP +
Sbjct: 341 MVTASFLVKDLLVDWRWGERYFAEKLIDYDLAANNGGWQWAASTGCDAQPWFRIFNPVTQ 400
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
KFDP G+++RR++PELA L + IH PW A + G LG +YP PIV D A+
Sbjct: 401 SQKFDPEGKFIRRYVPELAALDNKAIHAPWQAK---VLPGGFLLGRDYPRPIV--DHAEQ 455
Query: 476 RLDEALSEMWQQEAA 490
R +AL+ Q++ A
Sbjct: 456 R-TQALALFGQRQKA 469
>gi|251782896|ref|YP_002997199.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242391526|dbj|BAH81985.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
Length = 474
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 138/488 (28%), Positives = 241/488 (49%), Gaps = 26/488 (5%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
S++WFRRDLRVED ALA + + + + VF + E+ P ++ + S+
Sbjct: 2 VSVMWFRRDLRVEDQKALARAIASQSPTLCVFQFNQEQLSQ--PPSRNQSAVVASVLAFK 59
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGA-TQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L+ G L D ++ ++ + T ++FN+ RD +A + A+
Sbjct: 60 EELKEKGIDLYVMHG-DLITCFEQLAQQLDQWTDVYFNYDESGFGRRRDQQAAQWFRAKK 118
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I + ++ L+ ++ + GQ + F ++ +P + P++ + +
Sbjct: 119 INIHAYQDHYLHGSQEIKNQSGQYYKIFTPYYRVWQCLP--KETPVVVDLSRGNWLSLKI 176
Query: 184 PSDTL-VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
P TL + E + N ++ A + L F++ L +Y R TSF
Sbjct: 177 PQATLELIETLKDTTFNDVMTV------KEAKERLNHFVDNQLADYDTTRDFPSRCGTSF 230
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSP+L G VS+R V+ V ++ + ++V FLK + R++ + +P
Sbjct: 231 LSPYLRLGMVSIRTVYQAV--------SQAPASSGQAV--FLKELAWRDFYHMVYVANPN 280
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ + + W + FKAW++G+TGYP++DA M++L ATGW+H+R+R+VV+SF
Sbjct: 281 QKKLAIQEAFRHLEWDENPAAFKAWKEGQTGYPIIDAAMKQLLATGWMHNRLRMVVASFL 340
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
K LQ+ WR G YF + L+D D S+ GWQ+ + D + RI NP +G +FDP+
Sbjct: 341 TKDLQIDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFDPD 400
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
GE++R +LP L +P +++ PW PE++ ++ +G +YP P+V D A+ R
Sbjct: 401 GEFIRSYLPSLVSVPQTYLYEPWKMPEALQESIACIIGKDYPHPLV--DHAEQRKRAIAR 458
Query: 483 EMWQQEAA 490
W +E A
Sbjct: 459 YEWAKEKA 466
>gi|417927065|ref|ZP_12570453.1| putative deoxyribodipyrimidine photo-lyase [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
gi|340764939|gb|EGR87465.1| putative deoxyribodipyrimidine photo-lyase [Streptococcus
dysgalactiae subsp. equisimilis SK1250]
Length = 474
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 137/487 (28%), Positives = 239/487 (49%), Gaps = 24/487 (4%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S++WFRRDLRVED ALA + + + +E+ P R ++ + S+
Sbjct: 2 VSVMWFRRDLRVEDQKALARAIASQSPTLCVFQFNQEQFSQPPSR-NQSAVVASVLAFKE 60
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA-TQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
L+ G L D ++ ++ + T ++FN+ RD +A + A+ I
Sbjct: 61 ELKEKGIDLYVMHG-DLITCFEQLAQQLDQWTDVYFNYDESGFGRRRDQQAAQWFRAKKI 119
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
+ ++ L+ ++ + GQ + F ++ +P + P++ + + P
Sbjct: 120 NIHAYQDHYLHGSQEIKNQSGQYYKIFTPYYRVWQCLP--KETPVVVDLSRGNWLSLKIP 177
Query: 185 SDTL-VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
TL + E + N ++ A + L F++ L +Y R TSFL
Sbjct: 178 QATLELIETLKDTTFNDVMTV------KEAKERLNHFVDNQLADYDTTRDFPSRCGTSFL 231
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SP+L G VS+R V+ V ++ + ++V FLK + R++ + +P
Sbjct: 232 SPYLRLGMVSIRTVYQAV--------SQAPASSGQAV--FLKELAWRDFYHMVYVANPNQ 281
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
+ + + W + FKAW++G+TGYP++DA M++L ATGW+H+R+R+VV+SF
Sbjct: 282 KKLAIQEAFRHLEWDENPAAFKAWKEGQTGYPIIDAAMKQLLATGWMHNRLRMVVASFLT 341
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K LQ+ WR G YF + L+D D S+ GWQ+ + D + RI NP +G +FDP+G
Sbjct: 342 KDLQIDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFDPDG 401
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSE 483
E++R +LP L +P +++ PW PE++ ++ +G +YP P+V D A+ R
Sbjct: 402 EFIRSYLPSLVSVPQTYLYEPWKMPEALQESIACIIGEDYPHPLV--DHAEQRKRAIARY 459
Query: 484 MWQQEAA 490
W +E A
Sbjct: 460 EWAKEKA 466
>gi|339327951|ref|YP_004687643.1| deoxyribodipyrimidine photo-lyase PhrA [Cupriavidus necator N-1]
gi|338170552|gb|AEI81605.1| deoxyribodipyrimidine photo-lyase PhrA [Cupriavidus necator N-1]
Length = 511
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 158/484 (32%), Positives = 247/484 (51%), Gaps = 30/484 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPEEEGPYYP-GR-VSRW--WLKHSLSH 62
+VWFRRDLR +D+ AL ++ V VF++ E P GR V R ++ SL
Sbjct: 29 LVWFRRDLRADDHAALHYALKHCRQVWCVFVFDREILDPLIARGRKVDRRVEFILRSLEP 88
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L +L G L+ T + ++ + A +F NH Y+P + RD +AL +
Sbjct: 89 LRRTLTDAGGGLIVLDDT-ARDAIPRLAAELDAEAVFTNHDYEPAAKRRDTAVSQALASD 147
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS--MPFDPDAPLLPPKRINS--G 178
+ +F +++E D+ QGQPF+ F + L PFD L P ++ G
Sbjct: 148 FRVLFTFKDQVIFEADDLMTGQGQPFSVFTPYKNAWLRGVQPFD-----LRPYPVDKYLG 202
Query: 179 DMSRCPSD----TLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRK 234
++ P + + +D SN L P S+ +AL + +Y R
Sbjct: 203 ALAPVPRQYQKVSPMLDDLGFAVSN--LVEIAMPTGSDGARALFDEFIDRIGDYGNRRDF 260
Query: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSR 294
S+LS HL FG +S+R L R + G+K+ +V +L + R++
Sbjct: 261 PSLRGPSYLSVHLRFGTISIRT---LARAALDAVLRGGSKSAGAAV--WLSELIWRDFYF 315
Query: 295 YMSFNHPYSHE----RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWL 350
+ +HP + RP L++ V + YF+AW +TGYPLVDA M ++ +G++
Sbjct: 316 MILHHHPRVADGKSFRPEYDALRWVDSVTGDRYFQAWCDAQTGYPLVDAAMLQIHQSGYM 375
Query: 351 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRID 410
H+R+R+V +SF VK L + WR G +YF D L D D ++ GWQ+ + T D + + RI
Sbjct: 376 HNRLRMVTASFLVKDLGVDWRRGEQYFADQLNDFDFSANNGGWQWAASTGCDAQPYFRIF 435
Query: 411 NPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRI 470
NP + KFDP G ++R++LP LA++P ++IH PW AP +VL AG++LG NYP PIV+
Sbjct: 436 NPVMQSEKFDPQGRFIRKYLPVLAQMPDKYIHAPWTAPVNVLATAGVKLGENYPPPIVQH 495
Query: 471 DAAK 474
D A+
Sbjct: 496 DVAR 499
>gi|386317413|ref|YP_006013577.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|410495305|ref|YP_006905151.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|417752618|ref|ZP_12400804.1| putative deoxyribodipyrimidine photo-lyase [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
gi|323127700|gb|ADX24997.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
gi|333771615|gb|EGL48541.1| putative deoxyribodipyrimidine photo-lyase [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
gi|410440465|emb|CCI63093.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
Length = 474
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 138/488 (28%), Positives = 241/488 (49%), Gaps = 26/488 (5%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
S++WFRRDLRVED ALA + + + + VF + E+ P ++ + S+
Sbjct: 2 VSVMWFRRDLRVEDQKALARAIASQSPTLCVFQFNQEQLSQ--PPSRNQSAVVASVLAFK 59
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGA-TQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L+ G L D ++ ++ + T ++FN+ RD +A + A+
Sbjct: 60 EELKEKGIDLYVMHG-DLITCFEQLAQQLDQWTDVYFNYDESGFGRRRDQQAAQWFRAKK 118
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I + ++ L+ ++ + GQ + F ++ +P + P++ + +
Sbjct: 119 INIHAYQDHYLHGSQEIKNQSGQYYKIFTPYYRVWQCLP--KETPVVVDLSRGNWLSLKI 176
Query: 184 PSDTL-VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
P TL + E + N ++ A + L F++ L +Y R TSF
Sbjct: 177 PQATLELIETLKDTTFNDVMTV------KEAKERLNHFVDNQLADYDTTRDFPSRCGTSF 230
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSP+L G VS+R V+ V ++ + ++V FLK + R++ + +P
Sbjct: 231 LSPYLRLGMVSIRTVYQAV--------SQAPASSGQAV--FLKELAWRDFYHMVYVANPN 280
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ + + W + FKAW++G+TGYP++DA M++L ATGW+H+R+R+VV+SF
Sbjct: 281 QKKLAIQEAFRHLEWDENPAAFKAWKEGQTGYPIIDAAMKQLLATGWMHNRLRMVVASFL 340
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
K LQ+ WR G YF + L+D D S+ GWQ+ + D + RI NP +G +FDP+
Sbjct: 341 TKDLQIDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFDPD 400
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
GE++R +LP L +P +++ PW PE++ ++ +G +YP P+V D A+ R
Sbjct: 401 GEFIRSYLPSLVSVPQTYLYEPWKMPEALQESIACIIGEDYPHPLV--DHAEQRKRAIAR 458
Query: 483 EMWQQEAA 490
W +E A
Sbjct: 459 YEWAKEKA 466
>gi|254485504|ref|ZP_05098709.1| deoxyribodipyrimidine photolyase [Roseobacter sp. GAI101]
gi|214042373|gb|EEB83011.1| deoxyribodipyrimidine photolyase [Roseobacter sp. GAI101]
Length = 465
Score = 220 bits (561), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 143/431 (33%), Positives = 215/431 (49%), Gaps = 24/431 (5%)
Query: 9 VWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
+WFRRDLR+ D+PAL+A + G VI VFI ++ G +W L + D +L
Sbjct: 1 MWFRRDLRLTDHPALSAAAQTGRPVIPVFI---RDDAVAGLGAAPKWRLGLGIGAFDDAL 57
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
R + L+ ++ D++ L +++K TGA ++++ LYDP + RD KEAL + R
Sbjct: 58 REKSSRLILRKG-DALEVLQDLIKETGAGAVYWSRLYDPQATARDADIKEALKGADVEAR 116
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
SF L++EPW V G + + FW + D APL PK + + D D
Sbjct: 117 SFGGHLMFEPWTVETKTGGNYKVYTPFWNAVKNTGVD--APLSAPKNLTAPDTWPRSDDL 174
Query: 188 LVFEDESEKGSNALLARAWSP-GWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPH 246
+ A + R + G +A L F+ + +Y NR TS LS +
Sbjct: 175 AEWTMGGAMQRGADVVRPFVQLGEKSAQSRLGAFMAHGVADYKANRDLPGVDGTSNLSEN 234
Query: 247 LHFGEVSVRKVFHLVRIKQVSWANEGNKA---GDESVNLFLKSIGLREYSRYMSFNHPYS 303
L GE+S + +H G +A G + FLK + RE++ ++ + P
Sbjct: 235 LALGEISPHQCWH-----------AGQRALHDGKQGAETFLKELVWREFAYHLMHHSPRI 283
Query: 304 HERPLLGHLKFFSWVVDE--GYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ F W DE KAW+ GRTG P VDA MREL+ TG +H+R R++V+S+
Sbjct: 284 LTDNWREEWQAFPWNEDERLAEVKAWKHGRTGEPFVDAAMRELYVTGRMHNRGRMIVASY 343
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L WR G K+F D L+D D S+A+GWQ+ +G+ PD + R+ NP + KFD
Sbjct: 344 LTKHLMCHWRIGQKWFEDCLIDWDPASNAMGWQWAAGSGPDATPYFRVFNPATQLDKFDK 403
Query: 422 NGEYVRRWLPE 432
N +Y RW+ E
Sbjct: 404 NRDYTSRWIAE 414
>gi|425735042|ref|ZP_18853358.1| deoxyribodipyrimidine photo-lyase [Brevibacterium casei S18]
gi|425480486|gb|EKU47652.1| deoxyribodipyrimidine photo-lyase [Brevibacterium casei S18]
Length = 497
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 148/462 (32%), Positives = 223/462 (48%), Gaps = 43/462 (9%)
Query: 4 RGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEE---GPYYPGRVSRWWLKHSL 60
R +++WFR DLRV D+ AL+A G V+A+++ +E GP G +RWW+ SL
Sbjct: 7 RHLTLLWFRDDLRVSDHGALSAARADGDVVAIWVREVRDEESRGPRPLGAAARWWVHESL 66
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+ L+ L SLG L+ + GA + ++ Y P S D +AL
Sbjct: 67 TVLERELDSLGIPLLVAAGRAAEIIPAAAAD-LGAGTVRWSRRYAPASRALDEVVTDALG 125
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPF-ATFAAFWEKCLSMPFDPDAPLLPPKRINSGD 179
GIAV + LL EPW V + + F FW +P P+ P + ++S
Sbjct: 126 ENGIAVEASPGALLVEPWQVEPSSASAYYKVFTPFWNAAREVPVASPLPIPPAQTLDSDT 185
Query: 180 MSRCPS------------DTLVF--------EDESEKGSNA--------LLARAWSPGWS 211
+R D L D S +GS +A W+PG
Sbjct: 186 AARIEQVRESDSHLVATIDDLALLSPAGPAGGDSSTEGSRTSPFPWWKDTIAGHWTPGCV 245
Query: 212 NADKALTTFINGPLIEYSKNRR-KADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWAN 270
A++ + + + Y+++R AD TS LSP L FGEVS R++ V
Sbjct: 246 TAEEEVDD-LGARVDGYAEDRDIPADRDGTSRLSPRLRFGEVSPRQLLAAV--------T 296
Query: 271 EGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQG 330
G +++ + RE++ +++F+ P RP+ F + D AW+QG
Sbjct: 297 ALTDVGASDREAWVRQLYWREFAWHLTFHVPDLDRRPMRPEFAEFPYEDDPEALAAWQQG 356
Query: 331 RTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDA 390
RTG LVDAGMR+LW TGW+H+R+R+V +S K L LPW+ G ++FWDTL+DAD ++
Sbjct: 357 RTGIALVDAGMRQLWQTGWMHNRVRMVTASLLTKNLLLPWQSGEQWFWDTLVDADEANNP 416
Query: 391 LGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPE 432
+ WQ+++G D F R+ NP+ + +FDP YV RWL E
Sbjct: 417 VSWQWVAGCGADASPFFRVFNPERQRARFDPERVYVTRWLKE 458
>gi|399992584|ref|YP_006572824.1| deoxyribodipyrimidine photo-lyase PhrB [Phaeobacter gallaeciensis
DSM 17395 = CIP 105210]
gi|398657139|gb|AFO91105.1| deoxyribodipyrimidine photo-lyase PhrB [Phaeobacter gallaeciensis
DSM 17395 = CIP 105210]
Length = 479
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 151/434 (34%), Positives = 226/434 (52%), Gaps = 29/434 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I W RRDLR+ DNPALAA V AG VI VFI+ +E G R+ L L+HL
Sbjct: 12 IWWVRRDLRLADNPALAAAVAAGVPVIPVFIFETLDEDL---GAAPRFRLGLGLAHLAKE 68
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L G L+ +R + L +++ TGA + + YDP ++ RD KE L QGIA
Sbjct: 69 LEQRGARLILRRGP-AQEVLTQLITETGAGAVHWTRAYDPQAIARDTGIKEQLKGQGIAA 127
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-------NSGD 179
+SF LL+EPW V G + ++ +W+ D D + P RI S D
Sbjct: 128 KSFGGHLLFEPWTVETKTGGMYRVYSPYWKSVRDR--DVDGLIAAPSRIPAPAHWPTSDD 185
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
+ D+ +G++ ++A+ G A + L F++ + +Y ++R
Sbjct: 186 L-----DSWQMAAAMRRGAD-VVAQYCRVGEDAAQERLAEFLDTRVADYKQDRDFPAVDA 239
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LS +L +GE+S R+++H E +AG FLK I RE++ ++ F+
Sbjct: 240 TSGLSENLAWGEISPRRMWHH--------GLEARRAGKSGAEHFLKEIVWREFAYHLMFH 291
Query: 300 HPYSHERPLLGHLKFFSWVV-DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
P+ R + F+W D+ AWR+G+TGY VDA MREL+ TG +H+R R++V
Sbjct: 292 TPHILTRNWRPEWEHFNWSERDDDKVDAWRRGQTGYNFVDAAMRELYVTGKMHNRARMIV 351
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF K + WR G ++F + L+D D S+A+GWQ+++G+ PD F RI NP + K
Sbjct: 352 ASFLTKHMLTHWRIGQQWFEECLVDWDPASNAMGWQWVAGSGPDASPFFRIFNPDGQLEK 411
Query: 419 FDPNGEYVRRWLPE 432
FDP G Y W+ E
Sbjct: 412 FDPKGRYQSAWIAE 425
>gi|257877829|ref|ZP_05657482.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC20]
gi|257811995|gb|EEV40815.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC20]
Length = 473
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 148/496 (29%), Positives = 239/496 (48%), Gaps = 42/496 (8%)
Query: 5 GCSIVWFRRDLRVEDNPALAAGVRA----GAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
++WFR+DLR+EDN AL + + ++ VF ++ P P S + ++
Sbjct: 2 AIHVMWFRKDLRLEDNTALTEALVSLQENDHLLCVFHLNDKQFLPEAP---SHDYFFSAV 58
Query: 61 SHLDSSLR--SLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEA 118
+H + + +L L+T T++ L +QL+FN RD KE
Sbjct: 59 AHFIKAAKKQNLTIHLLTGTLTEAFDQLFACYPEW--SQLYFNFDNRGFGRKRDLYIKEL 116
Query: 119 LTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSG 178
+ +GI V SF L++P +V G + F +++K + +P P + +
Sbjct: 117 VEKKGITVHSFEDHHLHQPTEVTKEDGTYYKKFTPYYKKWIQLP-------KPVYQKQAL 169
Query: 179 DMSRCPSDTLVFEDESE-KGSNALLARAWS---------PGWSNADKALTTFINGPLIEY 228
D + ++ F+D K ALLA+ G A K L F+ L Y
Sbjct: 170 DFEK----SVHFDDAPHFKAGTALLAKLLENRKTDFSTIVGEDYAHKQLQAFVQKRLAAY 225
Query: 229 SKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIG 288
K+R TS LSP L FG++S+RKV WA FLK +
Sbjct: 226 EKDRDIPSIKGTSRLSPFLSFGQISIRKV----------WAACQGMPSSTGKATFLKELA 275
Query: 289 LREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATG 348
R++ + F+HP L+ + W +E W+ G+TGYP++DA MR+L TG
Sbjct: 276 WRDFYHMIYFSHPEQKNYELIEKYRNMDWRKNEEELTKWQAGQTGYPIIDAAMRQLNQTG 335
Query: 349 WLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDR 408
W+H+R+R++V+SF K L + WR G YF L+D D S+ GWQ+ + T D + R
Sbjct: 336 WMHNRLRMIVASFLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDAVPYFR 395
Query: 409 IDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
I NP +G KFD +G ++++++PELA+LP ++IH P+ + + LG++YP PIV
Sbjct: 396 IFNPITQGKKFDKDGTFIKQFVPELAQLPLKFIHEPYLMTDEEQADLKVVLGTDYPLPIV 455
Query: 469 RIDAAKCRLDEALSEM 484
+ A+ R + S++
Sbjct: 456 DHNEARKRALDLYSKI 471
>gi|258624237|ref|ZP_05719186.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus VM603]
gi|258583388|gb|EEW08188.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus VM603]
Length = 469
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 153/472 (32%), Positives = 239/472 (50%), Gaps = 32/472 (6%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFRRDLR DN AL A + +G V AV++ AP++ ++ + ++ L+ L
Sbjct: 2 KLVWFRRDLRSFDNTALTAAIESGETVAAVYVAAPQQWHQHHLAPIQADFIWRRLAALQQ 61
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L ++ L ++ D + +++ ++ KA A Q+ N Y+ RD R ++ L Q
Sbjct: 62 ELAAINVPLFYQQVADFREAATAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLAEQ 121
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
GI+ +F+ + P V QG+ F F F LS+ F P P++P R +S
Sbjct: 122 GISWSAFDDKCILPPGSVRTKQGEFFKVFTPFKRAWLSL-FQP--PVIP--RNHSAAPWD 176
Query: 183 CPSD--TLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
P++ LV+ + + + W + L F + +Y + R T
Sbjct: 177 VPNEFSHLVWHTDQMFNYPRVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFPAREGT 236
Query: 241 SFLSPHLHFGEVSVRK-VFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
S LSP+L G +S R+ V L R +S +EG ++L + RE+ +++
Sbjct: 237 SVLSPYLAIGALSARQCVARLYRESAMSALSEG-------AQVWLSELIWREFYQHLVAI 289
Query: 300 HP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
P S R L W D F+ W +G TGYP+VDA MR+L TGW+H+R+R++V
Sbjct: 290 EPNISKSRDFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIV 349
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP +G K
Sbjct: 350 ASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEK 409
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAP--ESVLQAAGIELGSNYPFPIV 468
FDPNG+++RRW+PEL + + +IH PW P SVL YP P+V
Sbjct: 410 FDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVNSVL----------YPPPLV 451
>gi|85708828|ref|ZP_01039894.1| hypothetical protein NAP1_06295 [Erythrobacter sp. NAP1]
gi|85690362|gb|EAQ30365.1| hypothetical protein NAP1_06295 [Erythrobacter sp. NAP1]
Length = 463
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 150/442 (33%), Positives = 231/442 (52%), Gaps = 23/442 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
I+W RRDLR+ DNPAL +AG V+ V++ E + G SRWWL HSL L SL
Sbjct: 6 ILWLRRDLRMADNPALYHAAKAGPVVCVYVLDDEAPEHHRMGGASRWWLHHSLESLSKSL 65
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
+ L+ +R D+V L V A GA + N Y+P +A++ L + I ++
Sbjct: 66 GTRNAKLILRRG-DAVEELTTVANAVGADTIHANTHYEPWW----RKAQKKLKDE-IDLQ 119
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
++ L+ V G P+ + F+ K L P L P+ ++S D SD
Sbjct: 120 LYDGVYLFPAGHVTTGSGDPYKIYTPFY-KALRQELPPRDVLPEPETLSSPD-DWPASDE 177
Query: 188 LVFED--ESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSP 245
L + ++ + +A W G A + L+ + + + +Y R TS LSP
Sbjct: 178 LADWNLLPTKPDWSGGIADFWEVGEDAAHERLSEWEDH-VADYEDKRNFPSVDKTSRLSP 236
Query: 246 HLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE 305
HLHFGE+S +V+H ++ K+ ++ N E + + + EY Y S N+ ++
Sbjct: 237 HLHFGEISPVQVWHALKHKR---SDGWNSFESELIWRDYAANVICEYPAYASENYREDYD 293
Query: 306 RPLLGHLKFFSWVVDEGY---FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ L++ DE K W++G+TGYP+VDAGMR+LW TGW+H+R+R++ +SF
Sbjct: 294 K-----LEWRDPDSDEKAAKDLKKWQEGKTGYPIVDAGMRQLWQTGWMHNRVRMITASFL 348
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
+K L + WR G ++FWD L+DAD S+A+ WQ+ +GT D F RI P + KFD
Sbjct: 349 IKHLLIDWRKGEQWFWDCLVDADYSSNAVNWQWNAGTGVDSNMFSRIMAPLTQSEKFDA- 407
Query: 423 GEYVRRWLPELARLPTEWIHHP 444
Y+R ++PELA L +IH P
Sbjct: 408 AAYIREYVPELADLDEPYIHDP 429
>gi|327342154|gb|AEA50864.1| cry2-2 [Populus tremula]
Length = 177
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 101/172 (58%), Positives = 128/172 (74%), Gaps = 1/172 (0%)
Query: 4 RGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHL 63
R +IVWFRRDLR+EDNPALAA R G V VFIW P+EEG +YPGRVSRWWLK SL+HL
Sbjct: 3 RSKTIVWFRRDLRIEDNPALAAAARDGCVFPVFIWCPKEEGQFYPGRVSRWWLKQSLAHL 62
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
SL+SLG LV ++ +V +LL+ ++ GAT++ FNHLYDP+SLVRDH KE L G
Sbjct: 63 GQSLKSLGAELVLIKTHSTVVALLDCIETIGATRVVFNHLYDPVSLVRDHNIKEKLVELG 122
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI 175
I+V+S+N DLLYEPW++ D +G F TF A+W+KCL M +P + LPP R+
Sbjct: 123 ISVQSYNGDLLYEPWEIYDERGYAFTTFEAYWDKCLHMQMEPVSH-LPPWRL 173
>gi|183179740|ref|ZP_02957951.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae MZO-3]
gi|183013151|gb|EDT88451.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae MZO-3]
Length = 469
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 147/463 (31%), Positives = 233/463 (50%), Gaps = 28/463 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFRRDLR DN AL A + +G V A++I PE+ ++ + + L+ L
Sbjct: 3 LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQE 62
Query: 67 LRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L +L L ++ D + ++ ++ K ATQ+ N Y+ RD A++ L+ QG
Sbjct: 63 LAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLSEQG 122
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I +F+ + P V QG+ F F F L++ F P P++ R +
Sbjct: 123 ITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTL-FQP--PVIGKNR--PAALWNV 177
Query: 184 PSDT--LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
PS LV+ E G + + W+ + L F + +Y + R TS
Sbjct: 178 PSALAELVWHPEQTFGYPRVDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGTS 237
Query: 242 FLSPHLHFGEVSVR----KVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
LSP+L G +S R +++H + ++S E ++L + RE+ +++
Sbjct: 238 SLSPYLAIGVLSARQCVARLYHESSMGELS----------EGAQVWLSELIWREFYQHLV 287
Query: 298 FNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
P S R + W D F+ W +G+TGYP+VDA MR+L TGW+H+R+R+
Sbjct: 288 AIEPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+V+SF K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP +G
Sbjct: 348 IVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQG 407
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAP--ESVLQAAGI 457
KFDPNG+++RRW+PEL + + +IH PW P SVL A +
Sbjct: 408 EKFDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVNSVLYPARL 450
>gi|419828231|ref|ZP_14351722.1| DNA photolyase family protein [Vibrio cholerae HC-1A2]
gi|419833153|ref|ZP_14356614.1| DNA photolyase family protein [Vibrio cholerae HC-61A2]
gi|422918665|ref|ZP_16952966.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-02A1]
gi|423779915|ref|ZP_17713999.1| DNA photolyase family protein [Vibrio cholerae HC-55C2]
gi|423839645|ref|ZP_17717748.1| DNA photolyase family protein [Vibrio cholerae HC-59A1]
gi|423867628|ref|ZP_17721422.1| DNA photolyase family protein [Vibrio cholerae HC-60A1]
gi|423999226|ref|ZP_17742419.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-02C1]
gi|424011242|ref|ZP_17754110.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-55B2]
gi|424021069|ref|ZP_17760839.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-59B1]
gi|424626283|ref|ZP_18064733.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-50A1]
gi|424627178|ref|ZP_18065542.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-51A1]
gi|424630973|ref|ZP_18069196.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-52A1]
gi|424637890|ref|ZP_18075887.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-55A1]
gi|424641791|ref|ZP_18079663.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-56A1]
gi|424646307|ref|ZP_18084035.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-57A1]
gi|443525106|ref|ZP_21091302.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-78A1]
gi|341634315|gb|EGS59075.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-02A1]
gi|408010060|gb|EKG47937.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-50A1]
gi|408021264|gb|EKG58528.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-56A1]
gi|408021477|gb|EKG58729.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-55A1]
gi|408029047|gb|EKG65873.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-52A1]
gi|408041001|gb|EKG77142.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-57A1]
gi|408061060|gb|EKG95655.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-51A1]
gi|408623304|gb|EKK96258.1| DNA photolyase family protein [Vibrio cholerae HC-1A2]
gi|408638621|gb|EKL10508.1| DNA photolyase family protein [Vibrio cholerae HC-55C2]
gi|408647223|gb|EKL18751.1| DNA photolyase family protein [Vibrio cholerae HC-60A1]
gi|408648057|gb|EKL19488.1| DNA photolyase family protein [Vibrio cholerae HC-59A1]
gi|408650477|gb|EKL21752.1| DNA photolyase family protein [Vibrio cholerae HC-61A2]
gi|408849615|gb|EKL89628.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-02C1]
gi|408864943|gb|EKM04356.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-59B1]
gi|408870969|gb|EKM10231.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-55B2]
gi|443456469|gb|ELT20140.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-78A1]
Length = 469
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 148/459 (32%), Positives = 231/459 (50%), Gaps = 20/459 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFRRDLR DN AL A + +G V A++I PE+ ++ + + L+ L
Sbjct: 3 LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQE 62
Query: 67 LRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L +L L ++ D + ++ ++ K ATQ+ N Y+ RD A++ LT QG
Sbjct: 63 LVALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQHRDQSAQQLLTEQG 122
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I +F+ + P V QG+ F F F L++ F P P++ R +
Sbjct: 123 ITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTL-FQP--PVIGKNR--PAALWNV 177
Query: 184 PSDT--LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
PS LV+ E + + W+ + L F + +Y + R TS
Sbjct: 178 PSTLAELVWHPEQTFDYPRVDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGTS 237
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+L G +S R+ + R+ S E + E ++L + RE+ +++ P
Sbjct: 238 SLSPYLAIGVLSARQC--VARLYHESSMGELS----EGAQVWLSELIWREFYQHLVAIEP 291
Query: 302 -YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
S R + W D F+ W +G+TGYP+VDA MR+L TGW+H+R+R++V+S
Sbjct: 292 NLSKSRDFVKWGARLEWCNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVAS 351
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP +G KFD
Sbjct: 352 FLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFD 411
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAP--ESVLQAAGI 457
PNG+++RRW+PEL + + +IH PW P SVL A +
Sbjct: 412 PNGDFIRRWVPELRSVSSAYIHQPWTYPAVNSVLYPARL 450
>gi|406658770|ref|ZP_11066910.1| deoxyribodipyrimidine photolyase [Streptococcus iniae 9117]
gi|405578985|gb|EKB53099.1| deoxyribodipyrimidine photolyase [Streptococcus iniae 9117]
Length = 470
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 139/474 (29%), Positives = 231/474 (48%), Gaps = 24/474 (5%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
+++WFRRDLR++DN AL + +G ++AVF P++ VS+ SL H
Sbjct: 2 VAVIWFRRDLRIQDNKALKHAIDSGGPLLAVFHLNPKQLRDV--ATVSQSAFIQSLQHFR 59
Query: 65 SSLRSLGTSL--VTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L G L + L + + T ++FN+ RD A +
Sbjct: 60 RTLDEKGIFLHVIFGELQYCFEHLQQAL--PDWTDVYFNYDDAGFGRKRDQEAAHFFREK 117
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
GIA+ ++ L+ +V + P+ F +++K L +P + P++ + D
Sbjct: 118 GIAIHAYQDHYLHGSQEVINQASLPYKVFTPYYKKWLQLP--KETPIVID--YSQVDWLF 173
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
P+ V +S+ + PG A + L FI L Y +R + TS
Sbjct: 174 VPNAKTV---DSKLNTLFRPLPYHKPGEEAALEQLHLFIEEGLEAYDVSRDYPEYDGTSR 230
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LS +L GE+++R V+ + + S + +F+K + RE+ + NHP+
Sbjct: 231 LSVYLRTGEINIRTVYAAISKAKAS----------KGKAVFIKELVWREFYHMIYVNHPH 280
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ PL W D+ F+ W+ G TGYP+VDA MR+L TGW+H+R+R++V+SF
Sbjct: 281 QKQEPLQAQFAAIEWENDQALFEQWKAGTTGYPMVDAAMRQLSQTGWMHNRLRMIVASFL 340
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L + WRWG +YF + L+D D S+ GWQ+ + T D + RI NP + +FDP
Sbjct: 341 VKDLLIDWRWGEEYFQEALMDYDSASNIGGWQWAASTGTDAVPYFRIFNPTTQAKRFDPK 400
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
G +++ ++P+L LP +W++ PW P + G + +YP PIV D + +
Sbjct: 401 GHFIKTYVPQLEALPLKWLYEPWKLPLDLQDDLGFKPERDYPLPIVSHDIQRKK 454
>gi|334142421|ref|YP_004535629.1| deoxyribodipyrimidine photo-lyase [Novosphingobium sp. PP1Y]
gi|333940453|emb|CCA93811.1| deoxyribodipyrimidine photo-lyase [Novosphingobium sp. PP1Y]
Length = 469
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 152/443 (34%), Positives = 220/443 (49%), Gaps = 29/443 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IVWFRRDLR+ D ALAA G V+ V++ E G SRWWL +SL+ LD++L
Sbjct: 18 IVWFRRDLRLSDQAALAAAAAQGPVLPVYVLDDETPRHRAMGSASRWWLHYSLASLDATL 77
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
R G+ L+ ++ L + + +GA+++ H Y+P R E + + +
Sbjct: 78 REKGSRLILRKGK-CEDVLAALAQESGASEVHALHHYEPWW-----RNAEKSVGKRLTLH 131
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI---NSGDMSRCP 184
+ + L P V G P+ + FW + L+ P P P+ I +S S
Sbjct: 132 LHHGNYLAPPGTVTTGSGSPYKIYTPFW-RALNERMPPPDPQRRPQNIALPDSWPASDAL 190
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
D + + + + W PG A K L F + Y R TSFLS
Sbjct: 191 DDWRLLPTQPDWAGG--MRDMWEPGEEGAKKRLRAFADH-ASRYEGQRNLPAVEGTSFLS 247
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
PHLHFGEVS +V+H + SV FL IG R+Y++ + P
Sbjct: 248 PHLHFGEVSPAQVWH------------ATSSAGGSVATFLGEIGWRDYAQNVIVQFPDYG 295
Query: 305 ERPLLGHLKFFSWVVDEGY---FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
R + F W + +AW+ G TGYP+VDAGMR+LW TGW+H+R+R++ +SF
Sbjct: 296 SRSARDTFEHFPWRSGKEAQEDLRAWQMGMTGYPIVDAGMRQLWHTGWMHNRVRMIAASF 355
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
+K L + W+ G ++FWDTL+DAD S+A+ WQ+ +G+ D F RI P + KFD
Sbjct: 356 LIKHLLIDWQEGEQWFWDTLVDADYASNAVNWQWTAGSGVDSNMFVRIMAPLTQSEKFD- 414
Query: 422 NGEYVRRWLPELARLPTEWIHHP 444
Y+R W+PELA LP IH P
Sbjct: 415 AAAYIREWVPELADLPDAEIHDP 437
>gi|221638553|ref|YP_002524815.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
KD131]
gi|221159334|gb|ACM00314.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
KD131]
Length = 471
Score = 219 bits (558), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 156/473 (32%), Positives = 236/473 (49%), Gaps = 23/473 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I+WFRRDLR+ DNP LA G +I +FI PE E G +W L + +
Sbjct: 8 ILWFRRDLRLADNPMLAEAAATGRPLIPLFILDPETEAL---GAAPKWRLGLGVEAFARA 64
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L LG+ LV +R +++ L +V TGA + ++ L++P RD K L GI
Sbjct: 65 LEGLGSRLVLRRGP-ALAVLEALVAETGAAGVHWSRLWEPAWRARDEGVKAGLRQAGIEA 123
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP-S 185
S ++EP +V QG + + FW+ P +P PP R+ S + P S
Sbjct: 124 ASHAGHTIFEPREVETGQGGFYRVYTPFWKAVKDRPVAASSP--PPARLPS--PAEWPVS 179
Query: 186 DTLVFED--ESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
+ L D + A++A + G + A + L F++GPL Y+ R + D+ TS L
Sbjct: 180 ERLACWDLGRAMNRGAAVVAPHLAVGEAAAAERLARFLSGPLDRYAAERDRPDAPVTSRL 239
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
S +L +GE+S R ++H + +AG E FL+ I RE+ ++ ++ P
Sbjct: 240 SENLTYGEISARSLWHAGMRARAE-----GRAGAEK---FLQEIAWREFGWHLLYHTPEI 291
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
R G F W D + WR+G TG P VDA MREL+ TG +H+R R++ S+
Sbjct: 292 ARRNWRGDWDAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYLT 351
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L WR G +F D L+D D S+ALGWQ+++G+ PD + RI NP + KFDP
Sbjct: 352 KHLLTDWRVGQAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQAEKFDPES 411
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
Y +R++ E+AR P E+V ++ G+ YP P+V + + R
Sbjct: 412 AYRQRFVAEIARRPGP---EALAFFEAVPRSWGLRPDRCYPGPVVGLAEGRER 461
>gi|406706534|ref|YP_006756887.1| FAD-binding protein, DNA photolyase family,DNA photolyase [alpha
proteobacterium HIMB5]
gi|406652310|gb|AFS47710.1| FAD-binding protein, DNA photolyase family,DNA photolyase [alpha
proteobacterium HIMB5]
Length = 474
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 136/466 (29%), Positives = 227/466 (48%), Gaps = 19/466 (4%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRA-GAVIAVFIWAPEEEGPYYPGRVSR-WWLKHSLSHLD 64
+IVW R D R+ NPAL+ + V+A++I+ P+ + R ++ WW+ SL
Sbjct: 5 AIVWIREDFRINLNPALSHACQNHNEVVALYIFNPKN---FINKREAQLWWISKSLESYS 61
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKE-ALTAQG 123
L + +L ++ D + L ++ K T L++N +Y+P + + ++ L
Sbjct: 62 KELSNFNINLEIQKG-DEIEVLSKIKKKDNIT-LYWNKIYEPEIINLGKKIRDNILLKNE 119
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I + F ++L E DV PF F FW + + P K
Sbjct: 120 INFKYFKGNILNEFQDVTKKDQTPFKVFTPFWRVAEEIYLN-SVPSKNSKIKKMKKKFNY 178
Query: 184 PSDTLVFEDE-SEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
D + +D +K + W + + L I + Y +R + TS
Sbjct: 179 FKDNINSKDLLPKKNWYKKFDKYWKISENESQNLLNDLIKNKINNYGTDRDIPSVSGTSK 238
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSP++ G++ V ++ + ++ K + ++ + +G RE+S + P
Sbjct: 239 LSPYIKHGQIHVENIYK--KCSEI-------KPKNINIKKYTNELGWREFSHSLINYFPE 289
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ L F WV ++ + KAW+QG TGYP+VDAGMREL+ TGW+H+R+R++V SF
Sbjct: 290 MLKGNLRKEFDRFPWVKNDKFLKAWKQGMTGYPIVDAGMRELYETGWMHNRVRMIVGSFL 349
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
VK L++ W+ G K+F + LLD + ++ WQ+++G D + RI NP +G KFD
Sbjct: 350 VKHLRIDWKEGEKHFRNCLLDFNEANNVAQWQWVAGCGADAAPYFRIFNPILQGEKFDKA 409
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
G YV++W+PEL ++P ++IH PW A +G NYP PIV
Sbjct: 410 GLYVKKWVPELNKVPEKFIHKPWEMDIKYQTALDTIIGKNYPKPIV 455
>gi|407804385|ref|ZP_11151209.1| DNA photolyase [Alcanivorax sp. W11-5]
gi|407021678|gb|EKE33442.1| DNA photolyase [Alcanivorax sp. W11-5]
Length = 488
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 149/492 (30%), Positives = 237/492 (48%), Gaps = 41/492 (8%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VW+R DLRV D+ ALAA V +G V A+++ P + + + RW++ SL L
Sbjct: 3 ALVWYRNDLRVHDHQALAAAVSSGLPVRALYLLCPGQWEAHQVAPLRRWYVLSSLRELGQ 62
Query: 66 SLRSLGTSLVTKRSTDSVS---SLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L +LG L D +L + + +QLF Y L RD + L
Sbjct: 63 ALAALGIVLDVIDCGDFAGVPQALADYCRRHQVSQLFCTREYPLNELRRDRAVADVLGGL 122
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSMPFDPDAPLLPPKRINSGD 179
GIA++ F+ +L P + QG P+ F + W+ L + +
Sbjct: 123 GIALQGFDDSVLVPPRALKTGQGTPYTVFTPYRRRWQHYLD------------EHPPAPP 170
Query: 180 MSRCPSDTLVFEDES--EKGSNAL-----LARAWSPGWSNADKALTTFINGPLIEYSKNR 232
+ + F D++ K AL L W PG + A + L F+ L Y R
Sbjct: 171 ARPRKREAVAFRDDNSLRKALAALDVPASLQAHWQPGEAAARRRLQGFVREGLAGYKAQR 230
Query: 233 RKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREY 292
A TS LS L G +SV++ + + R + A E + +E +++ + R++
Sbjct: 231 DFPAQAGTSLLSVALSAGTLSVQRCYLMAR---EAMAREADT--EEGALVWIGELAWRDF 285
Query: 293 SRYMSFNHPY-SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLH 351
R + N P+ + P K+ W DE F+AW +GRTGYPLVDA MR+L TGW+H
Sbjct: 286 YRQIMANFPHLAWGAPFREETKWLQWQRDEQCFQAWCEGRTGYPLVDAAMRQLNQTGWMH 345
Query: 352 DRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDN 411
+R+R+V + F K L + WRWG YF LLD D ++ GWQ+ + T D + R+ +
Sbjct: 346 NRLRMVTAMFLTKHLFIDWRWGEAYFMRQLLDGDFAANNGGWQWSASTGTDAAPYFRVFS 405
Query: 412 PQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRID 471
P + +FDP+G ++++++PEL L + +H PW AP L +YP PIV+ +
Sbjct: 406 PIRQSERFDPDGVFIKQYVPELHGLTGKALHQPWLAP---------MLAPDYPSPIVQHE 456
Query: 472 AAKCRLDEALSE 483
+ R+ A +
Sbjct: 457 GVRERVTAAFQQ 468
>gi|254875029|ref|ZP_05247739.1| phrB, deoxyribodipyrimidine photolyase [Francisella tularensis
subsp. tularensis MA00-2987]
gi|254841028|gb|EET19464.1| phrB, deoxyribodipyrimidine photolyase [Francisella tularensis
subsp. tularensis MA00-2987]
Length = 355
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 123/364 (33%), Positives = 195/364 (53%), Gaps = 24/364 (6%)
Query: 119 LTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSM------PFDPDAPLLPP 172
+ I V SFN LL EPW G + + F+++ + + P+ L
Sbjct: 1 MQQHKINVNSFNGSLLIEPWQCKKDDGTHYKVYTPFYKELIKIRKYRSNIAKPNFSYL-- 58
Query: 173 KRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNR 232
+++N+ + D+L + N + + W G S + + L F++ + EY R
Sbjct: 59 RKLNNSE----NLDSLKLIEPKHSWQNII--KQWQIGESASHQILEEFLDNKVKEYKTAR 112
Query: 233 RKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREY 292
+ +TS LSP+LHFGE+S ++F+ V+ NE + F+K + R++
Sbjct: 113 DFMSTDSTSKLSPYLHFGEISPNQIFNAVQSLDYIGNNEEH---------FIKELVWRDF 163
Query: 293 SRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHD 352
S Y + +P H + + F W D K W++G+TG P+VDAGMRELW G++H+
Sbjct: 164 SYYQIYYYPELHNKNINQKFDSFKWDNDPTLLKKWQKGQTGIPIVDAGMRELWQAGYMHN 223
Query: 353 RIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNP 412
R+R++V+SF +K + W++G K+F+DTL DAD S+ WQ+++G D + RI NP
Sbjct: 224 RVRMIVASFLIKNCLIHWKYGEKWFFDTLFDADFASNNANWQWVAGCGLDAAPYFRIFNP 283
Query: 413 QFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDA 472
+ KF+ EY+R+++PEL LP + I PW A E VLQ AGI LG NYP PIV +
Sbjct: 284 VLQAEKFEA-YEYIRKYVPELKLLPNKLIAKPWEASELVLQEAGITLGQNYPKPIVDLKK 342
Query: 473 AKCR 476
++ R
Sbjct: 343 SRDR 346
>gi|422920343|ref|ZP_16953666.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae BJG-01]
gi|341650406|gb|EGS74272.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae BJG-01]
Length = 469
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 147/463 (31%), Positives = 232/463 (50%), Gaps = 28/463 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFRRDLR DN AL A + +G V A++I PE+ ++ + + L L
Sbjct: 3 LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLVELQQE 62
Query: 67 LRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L +L L ++ D + ++ ++ K ATQ+ N Y+ RD A++ L+ QG
Sbjct: 63 LAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLSEQG 122
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I +F+ + P V QG+ F F F L++ F P P++ R +
Sbjct: 123 ITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTL-FQP--PVIGKNR--PAALWNV 177
Query: 184 PSDT--LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
PS LV+ E + + W+ + L F G + +Y + R TS
Sbjct: 178 PSALAELVWHPEQAFDYPRIDSTPWAADFETVRAQLRDFCRGRVQDYHQARDFPAREGTS 237
Query: 242 FLSPHLHFGEVSVR----KVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
LSP+L G +S R +++H + ++S E ++L + RE+ +++
Sbjct: 238 SLSPYLAIGVLSARQCVARLYHESSMGELS----------EGAQVWLSELIWREFYQHLV 287
Query: 298 FNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
P S R + W D F+ W +G+TGYP+VDA MR+L TGW+H+R+R+
Sbjct: 288 AIEPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+V+SF K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP +G
Sbjct: 348 IVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQG 407
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAP--ESVLQAAGI 457
KFDPNG+++RRW+PEL + + +IH PW P SVL A +
Sbjct: 408 EKFDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVNSVLYPARL 450
>gi|408402028|ref|YP_006859992.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|407968257|dbj|BAM61495.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
Length = 474
Score = 219 bits (557), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 137/488 (28%), Positives = 240/488 (49%), Gaps = 26/488 (5%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
S++WFRRDLRVED AL + + + + VF + E+ P ++ + S+
Sbjct: 2 VSVMWFRRDLRVEDQKALVRAIASQSPTLCVFQFNQEQLSQ--PPSRNQSAVVASVLAFK 59
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGA-TQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L+ G L D ++ ++ + T ++FN+ RD +A + A+
Sbjct: 60 EELKEKGIDLYVMHG-DLITCFEQLAQQLDQWTDVYFNYDESGFGRRRDQQAAQWFRAKK 118
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I + ++ L+ ++ + GQ + F ++ +P + P++ + +
Sbjct: 119 INIHAYQDHYLHGSQEIKNQSGQYYKIFTPYYRVWQCLP--KETPVVVDLSRGNWLSLKI 176
Query: 184 PSDTL-VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
P TL + E + N ++ A + L F++ L +Y R TSF
Sbjct: 177 PQATLELIETLKDTTFNDVMTV------KEAKERLNHFVDNQLADYDTTRDFPSRCGTSF 230
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSP+L G VS+R V+ V ++ + ++V FLK + R++ + +P
Sbjct: 231 LSPYLRLGMVSIRTVYQAV--------SQAPASSGQAV--FLKELAWRDFYHMVYVANPN 280
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ + + W + FKAW++G+TGYP++DA M++L ATGW+H+R+R+VV+SF
Sbjct: 281 QKKLAIQEAFRHLEWDENPAAFKAWKEGQTGYPIIDAAMKQLLATGWMHNRLRMVVASFL 340
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
K LQ+ WR G YF + L+D D S+ GWQ+ + D + RI NP +G +FDP+
Sbjct: 341 TKDLQIDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFDPD 400
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
GE++R +LP L +P +++ PW PE++ ++ +G +YP P+V D A+ R
Sbjct: 401 GEFIRSYLPSLVSVPQTYLYEPWKMPEALQESIACIIGEDYPHPLV--DHAEQRKRAIAR 458
Query: 483 EMWQQEAA 490
W +E A
Sbjct: 459 YEWAKEKA 466
>gi|429886347|ref|ZP_19367906.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae PS15]
gi|429226676|gb|EKY32756.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae PS15]
Length = 469
Score = 218 bits (556), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 146/463 (31%), Positives = 233/463 (50%), Gaps = 28/463 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFRRDLR DN AL A + +G V A++I PE+ ++ + + L+ L
Sbjct: 3 LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQE 62
Query: 67 LRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L +L L ++ D + ++ ++ K ATQ+ N Y+ RD A++ L+ QG
Sbjct: 63 LAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQFLSEQG 122
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I +F+ + P V QG+ F F F L++ F P P++ R +
Sbjct: 123 ITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTL-FQP--PVIGKNR--PAALWDV 177
Query: 184 PSDT--LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
PS LV+ E + + W+ + L F + +Y + R TS
Sbjct: 178 PSALAELVWHPEQAFDYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQTRDFPAQEGTS 237
Query: 242 FLSPHLHFGEVSVR----KVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
LSP+L G +S R +++H + ++S E ++L + RE+ +++
Sbjct: 238 SLSPYLAIGVLSARQCVARLYHESSMGEIS----------EGAQVWLSELIWREFYQHLV 287
Query: 298 FNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
P S R + W D F+ W +G+TGYP+VDA MR+L TGW+H+R+R+
Sbjct: 288 AIEPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+V+SF +K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP +G
Sbjct: 348 IVASFLIKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQG 407
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAP--ESVLQAAGI 457
KFDPNG+++RRW+PEL + + +IH PW P SVL A +
Sbjct: 408 EKFDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVNSVLYPARL 450
>gi|365866676|ref|ZP_09406283.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. W007]
gi|364003865|gb|EHM24998.1| deoxyribodipyrimidine photo-lyase [Streptomyces sp. W007]
Length = 451
Score = 218 bits (556), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 161/482 (33%), Positives = 242/482 (50%), Gaps = 44/482 (9%)
Query: 8 IVWFRRDLRVEDNPALAAGVR-AGAVIAVFIW--APEEEGPYYPGRVSRWWLKHSLSHLD 64
+V F DLR+ DNP L A +R A V+ +F+ A G P R++ +L L+ LD
Sbjct: 1 MVLFTSDLRLHDNPVLRAALRDADEVVPLFVRDDAVHRAGFDAPNRLA--FLADCLAALD 58
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ LR G LV +R ++ + + V + TGA + + R+ R +EAL G
Sbjct: 59 AGLRHRGGRLVVRRG-EAAAVVRRVAEETGAASVHVAAGVSRYAARREERIREALAGTGC 117
Query: 125 AVRSFNADLL-YEPWDVNDAQGQP-FATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
+R +A + P V G+ FA F ++ + + L P+ + D
Sbjct: 118 ELRVHDAVVTALAPGRVVPTGGKDHFAVFTPYFRRWEAAGVR--GTLTAPREVRVPDG-- 173
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
D+L D + K + LAR G K +T ++NGP+ +Y TS
Sbjct: 174 VSGDSLPDRD-TVKNLSPGLARG---GEDAGRKLVTAWLNGPMADYEDGHDDLAGDATSR 229
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP- 301
LSPHLHFG VS ++ H R K G G+ F++ + R++ + + P
Sbjct: 230 LSPHLHFGTVSAAELVHRAREK-------GGSGGEA----FVRQLAWRDFHHQVLADRPD 278
Query: 302 --YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
+S RP + W DE AWR GRTGYPLVDA MR+L GW+H+R R++ +
Sbjct: 279 ASWSDYRP-----RHDRWRSDEDEIDAWRTGRTGYPLVDAAMRQLAHEGWMHNRGRMLAA 333
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF K L + WR G ++F D L+D D+ ++ L WQ+++GT D R +R+ NP +G +F
Sbjct: 334 SFLTKTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPVIQGKRF 392
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGS-NYPFPIVRIDAAKCRLD 478
DP G+YVRRW+PELA L IH PW LQ G++ + +YP P+V + A+ R +
Sbjct: 393 DPRGDYVRRWVPELAGLAGSAIHEPWK-----LQ--GLDRAALDYPDPVVDLAEARSRFE 445
Query: 479 EA 480
A
Sbjct: 446 RA 447
>gi|139473471|ref|YP_001128187.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes str.
Manfredo]
gi|134271718|emb|CAM29951.1| putative deoxyribodipyrimidine photolyase [Streptococcus pyogenes
str. Manfredo]
Length = 469
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 141/489 (28%), Positives = 227/489 (46%), Gaps = 26/489 (5%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
S++WFRRDLR++D ALA + + + + VF + E+ + S S+
Sbjct: 2 VSVMWFRRDLRIDDQKALAHAIASQSPTLCVFQFNKEQLNLLHSRNQSS--FITSVLAFR 59
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
L+ G L + + T ++FN+ +RD +A + GI
Sbjct: 60 KLLKCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGI 119
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
AV ++ L+ ++ + GQP+ F ++ + P + P+ P
Sbjct: 120 AVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYP--KETPIKVELSQGRWLNLETP 177
Query: 185 SDTL--VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
D L V + EK + + A K L FI L Y NR TS
Sbjct: 178 DDVLRTVESIKDEKYQDV-------ATFDEASKQLNRFIQDQLAAYHANRDFPAQLGTSR 230
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSP L G + +R V+H VR N G + FLK + R++ + +P
Sbjct: 231 LSPFLRIGAIGIRTVYHAVR-------QAPNSLGQAT---FLKELAWRDFYNMVYVAYPD 280
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+P+ WV + +F+ W++G+TGYP+VDA M +L TGW+H+R+R++V+SF
Sbjct: 281 QKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFL 340
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
K L WR G +YF L+D D S+ GWQ+ + T D + RI NP + +FDP
Sbjct: 341 TKDLLCDWRLGEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQSKRFDPK 400
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
GE+++ +LP+L +P +++H PW P+ + ++ +G++YP PIV D AK R
Sbjct: 401 GEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIV--DHAKQREQAIAK 458
Query: 483 EMWQQEAAS 491
W +E A
Sbjct: 459 YEWAKEKAK 467
>gi|27804353|gb|AAO22533.1| cryptochrome 2 [Brassica rapa subsp. pekinensis]
Length = 157
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 101/156 (64%), Positives = 122/156 (78%)
Query: 211 SNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWAN 270
SNADK LT FI LI+Y+KN +K +TS LSP+LHFGE+SVR+VF R+KQ+ WA
Sbjct: 1 SNADKLLTEFIEKQLIDYAKNSKKVVGNSTSLLSPYLHFGEISVRRVFQCARMKQIIWAR 60
Query: 271 EGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQG 330
+ N G+ES LFL+ IGLR+YSRY+ FN P++HE+ LL HL+FF W D FKAWRQG
Sbjct: 61 DKNGQGEESAVLFLRGIGLRDYSRYICFNFPFTHEQSLLSHLRFFPWDADVEKFKAWRQG 120
Query: 331 RTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVL 366
RTGYPLVDAGMRELWATGW+H+RIRV+VSSF VK L
Sbjct: 121 RTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKFL 156
>gi|317052654|ref|YP_004113770.1| deoxyribodipyrimidine photo-lyase [Desulfurispirillum indicum S5]
gi|316947738|gb|ADU67214.1| Deoxyribodipyrimidine photo-lyase [Desulfurispirillum indicum S5]
Length = 469
Score = 218 bits (555), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 148/487 (30%), Positives = 240/487 (49%), Gaps = 36/487 (7%)
Query: 7 SIVWFRRDLRVEDN-PALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++VW R DLR+ D AA G+V+AVF + ++ V R +L +L L
Sbjct: 2 NLVWLRNDLRISDQRALGAAAAEGGSVLAVFCLCQRQWQRHHMAAVRRDFLLRNLECLRL 61
Query: 66 SLRSLGTSLVTKRSTDSVS---SLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L+++G L D + +LL++ + TGA +LFFN Y RD +
Sbjct: 62 QLQAVGIPLFVLDCHDFAAVPEALLKLARTTGARRLFFNEEYAIDEWRRDMAVERCFREN 121
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS----- 177
G+ VR ++ + +G+ + F F + L + + A L P +N+
Sbjct: 122 GMEVRRCCDHVVVPAGQLRSGRGECYRVFTPFQKAWLKLVVENPALLAPAPIVNTQPHPF 181
Query: 178 -GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
GD + P+D LA W G + A + L F++GP+ Y +R
Sbjct: 182 PGDGAALPTDI-----------PHPLAHLWPAGEAEAQRRLQAFLDGPIRRYHLDRDFPA 230
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LSP+L G +S+R+ VS A E G E ++L + RE+ +++
Sbjct: 231 IEGTSALSPYLACGVLSIRQC--------VSAALELANGGSEGARVWLSELIWREFFQHI 282
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
P S R H + +W DEG F AW +GRTGYP+VDA M +L +TGW+H+R+R
Sbjct: 283 LRAFPRVSTNRAFQEHTETVAWRYDEGEFAAWCEGRTGYPIVDAAMAQLHSTGWMHNRLR 342
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ + F K L + WRWG +YF + L+D DL ++ GWQ+ + T D + R+ +P +
Sbjct: 343 MICAMFLTKDLLIDWRWGERYFMEHLVDGDLAANNGGWQWAASTGTDAVPYFRVFHPTTQ 402
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
+FDP+G+++R +LP+LA L ++IH P ++ + + +YP P+V A+
Sbjct: 403 SKRFDPHGQFIRHFLPQLAELDEKYIHEPHDS------SGLLRPNIDYPRPMVDHKVARQ 456
Query: 476 RLDEALS 482
R +A S
Sbjct: 457 RAIDAFS 463
>gi|83942471|ref|ZP_00954932.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. EE-36]
gi|83846564|gb|EAP84440.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. EE-36]
Length = 473
Score = 218 bits (555), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 144/438 (32%), Positives = 223/438 (50%), Gaps = 22/438 (5%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHS 59
MS + ++W+RRDLR+ D+PAL+A AG VI VFI +++ G +W L
Sbjct: 1 MSDKSPILLWYRRDLRLSDHPALSAAANAGRPVIPVFI---KDKSVNALGAAPKWRLGLG 57
Query: 60 LSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
+ L SL + + L+ R D++ +L ++K TGA ++++ LYDP S+ RD + KE L
Sbjct: 58 VGALADSLEGVSSRLIL-REGDALEALQALIKETGAGTVYWSRLYDPDSVQRDSKIKETL 116
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGD 179
GI +SF +++EPW V G + + FW + +P PL P + + +
Sbjct: 117 CNDGIEAKSFGGHVMFEPWTVETKAGDCYKVYTPFWNNVKTRDVEP--PLSAPSDLPAPE 174
Query: 180 MSRCPSDTL---VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
S SD L ++G++ ++ R G A L F+ + +Y R
Sbjct: 175 -SWPDSDALDGWGLGAAMDRGAD-VVRRFVCLGEKAAQSRLGAFMAHGVADYKLTRDIPG 232
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
+ TS LS +L GE+S + +H A G + FLK + RE++ ++
Sbjct: 233 TDGTSNLSENLSLGEISPHQCWHA--------AQRALHDGKQGAETFLKELVWREFAYHL 284
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDE--GYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
+ P F W DE KAW+QGRTG P VDA MREL+ TG +H+R
Sbjct: 285 MHHTPRMLTDNWREEWDAFPWNEDERRAEVKAWKQGRTGEPFVDAAMRELYVTGRMHNRG 344
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R++V+S+ K L WR G K+F L+D D S+A+GWQ+ +G+ PD + R+ NP+
Sbjct: 345 RMIVASYLTKHLMCHWRIGQKWFEHCLIDWDPASNAMGWQWAAGSGPDASPYFRVFNPET 404
Query: 415 EGYKFDPNGEYVRRWLPE 432
+ KFD N +Y RW+ E
Sbjct: 405 QLDKFDKNRDYASRWIAE 422
>gi|91774946|ref|YP_544702.1| deoxyribodipyrimidine photo-lyase type I [Methylobacillus
flagellatus KT]
gi|91708933|gb|ABE48861.1| deoxyribodipyrimidine photo-lyase type I [Methylobacillus
flagellatus KT]
Length = 481
Score = 218 bits (555), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 153/471 (32%), Positives = 238/471 (50%), Gaps = 30/471 (6%)
Query: 7 SIVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPE--EEGPYYPGRVSRWWLKHSLSHL 63
S+VWFRRDLR D+ AL ++ + V+ F++ + + P RV W S+ L
Sbjct: 4 SLVWFRRDLRDYDHAALYHALKDSEQVVCAFVFDTDILDGLPRDDRRVEFIW--ESVREL 61
Query: 64 DSSLRSLGTSLVTK--RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTA 121
+L+ G L+ + ++T+ + +L V+ G ++ N Y+P ++ RD + L
Sbjct: 62 KLALQERGGDLLVRHGKATEEIPALASVL---GVECVYCNRDYEPAAVKRDDTVSQQLGT 118
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMS 181
QGIA +SF +++E ++ G PF+ F + CL D P R
Sbjct: 119 QGIAFKSFKDQVIFERDEIMTKSGTPFSVFTPYKNACLRKLDDFHLKAYPVDRYIHHLAQ 178
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
P E + SN L + P + AL + + Y R S
Sbjct: 179 SAPQPMPSLESLAFARSN--LKQLRLPTGMSGGMALFEDFSERMPRYRDARDFPALKGPS 236
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
+LS HL FG VS+R HL R +W G AG E+ +L + R++ + ++HP
Sbjct: 237 YLSVHLRFGTVSIR---HLAR---TAWQQGG--AGAET---WLNELLWRDFYFQVLYHHP 285
Query: 302 YSHE----RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
E +P H+ F + E FKAW +GRTGYPLVDA MR++ TG++H+R+R+V
Sbjct: 286 QVAEGHSFKPEFEHIPFPN---GESLFKAWCEGRTGYPLVDAAMRQINQTGYMHNRLRMV 342
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
+ F VK L + WRWG +YF + L+D DL ++ GWQ+ + T D + + RI NP +
Sbjct: 343 AAGFLVKDLLIDWRWGERYFAEKLIDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSE 402
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
KFDP G+++R+++PEL + IH PW P QA G+ +G +YP P+V
Sbjct: 403 KFDPEGKFIRKYVPELQPCDDKEIHAPWLIPPLRQQALGLVIGKDYPAPVV 453
>gi|262173169|ref|ZP_06040846.1| deoxyribodipyrimidine photolyase [Vibrio mimicus MB-451]
gi|261890527|gb|EEY36514.1| deoxyribodipyrimidine photolyase [Vibrio mimicus MB-451]
Length = 469
Score = 218 bits (555), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 151/472 (31%), Positives = 239/472 (50%), Gaps = 32/472 (6%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFRRDLR DN AL A + +G V AV++ P++ ++ + ++ L+ L
Sbjct: 2 KLVWFRRDLRSFDNTALTAAIESGETVAAVYVATPQQWLQHHLAPIQADFIWRRLAALQQ 61
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L ++ L ++ D + +++ ++ KA A Q+ N Y+ RD R ++ L Q
Sbjct: 62 ELAAINVPLFYQQVADFREAANAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLAEQ 121
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
GI+ +F+ + P + QG+ F F F LS+ F P P++P R +S
Sbjct: 122 GISWSAFDDKCILPPGSLRTKQGEFFKVFTPFKRAWLSL-FQP--PVIP--RNHSAAPWN 176
Query: 183 CPSD--TLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
P++ LV+ + + + W + L F + +Y + R T
Sbjct: 177 VPNEFSHLVWNTDQMFNYPRVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFPAREGT 236
Query: 241 SFLSPHLHFGEVSVRK-VFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
S LSP+L G +S R+ V L R ++S +EG ++L + RE+ +++
Sbjct: 237 SILSPYLAIGALSARQCVARLYRESEMSALSEG-------AQVWLSELIWREFYQHLVAI 289
Query: 300 HP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
P S R L W D F+ W +G TGYP+VDA MR+L TGW+H+R+R++V
Sbjct: 290 EPNISKSRDFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIV 349
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP +G K
Sbjct: 350 ASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEK 409
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAP--ESVLQAAGIELGSNYPFPIV 468
FDPNG+++RRW+PEL + + +IH PW P SVL YP P+V
Sbjct: 410 FDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVNSVL----------YPPPLV 451
>gi|254828345|ref|ZP_05233032.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
N3-165]
gi|258600738|gb|EEW14063.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
N3-165]
Length = 467
Score = 218 bits (555), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 141/464 (30%), Positives = 228/464 (49%), Gaps = 23/464 (4%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S++WFRRDLRV DN AL + ++ +F P + G S S++H
Sbjct: 2 TSVMWFRRDLRVSDNKALYHACKEDDLLLLFQVNP---AQFITGSPSHQAFFASVAHFKQ 58
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA-TQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ T+L+ + V L ++ + + +++FN RD AK Q I
Sbjct: 59 EVDK--TALLQIMFGEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFFDEQEI 116
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V++F+ L+ +V + + + F +++K + + P K D R
Sbjct: 117 EVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKK-----WREEIKETPFKVTLKADNIR-- 169
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
+ L + E + G A+ L FI + +Y K R + TS LS
Sbjct: 170 KENLFPKYEEQFAEMTCDLPILDSGEKTANTRLANFIKHDVADYDKARDFPELDKTSHLS 229
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
+L GE+SVR ++ + Q + A EG +F K + R++ + + P
Sbjct: 230 RYLRTGEISVRTIWQAL---QENEATEGRA-------IFEKELCWRDFYNMIYVSFPNQK 279
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
P+ + +F W + +FKAW++G+TG+PLVDA MR+L TGW+H+R+R+V +SF K
Sbjct: 280 NEPIQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTK 339
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L + WR+G KYF L+D D S+ GWQ+ + T D + RI NP + KFDP G+
Sbjct: 340 DLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTIQSQKFDPTGK 399
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
++R+++ ELA LP ++IH P E+ + G+ LG +YPFPIV
Sbjct: 400 FIRKYVKELANLPDKYIHQPEKMSETEQKEYGLLLGKDYPFPIV 443
>gi|238786314|ref|ZP_04630253.1| Deoxyribodipyrimidine photo-lyase [Yersinia bercovieri ATCC 43970]
gi|238712773|gb|EEQ04846.1| Deoxyribodipyrimidine photo-lyase [Yersinia bercovieri ATCC 43970]
Length = 481
Score = 218 bits (555), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 151/469 (32%), Positives = 219/469 (46%), Gaps = 24/469 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VW R DLRV DN AL A + VIAVFI P++ + +L+ +L L
Sbjct: 5 LVWLRNDLRVTDNLALYAACQDEHARVIAVFIATPKQWAAHDMAPRQAAFLRQNLQLLQG 64
Query: 66 SLRSLGTSLVTKRS---TDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L S G L + DS+ L + LF+N Y+ RD L Q
Sbjct: 65 ALASRGIPLHYHQCDDFQDSIVWLDNFCQQQQVDALFYNQQYELNERRRDEAFTAQLNRQ 124
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPP--KRINSGDM 180
IA SF+ +L P V + + F F + D +P R NSG +
Sbjct: 125 SIACHSFHDSVLLPPGSVQTGNHEMYKIFTPFRRAFIQRLMMSDCRCVPAPQARQNSGAV 184
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
P + + S S + G A + L +F + +Y + R + A T
Sbjct: 185 ELSPLEPFDYPQHSADNS------LFPAGEEAALQRLRSFCREQVQDYLQQRDRPAIAGT 238
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP+L G VS R+ F+ +R + + + D +L + RE+ R++ +
Sbjct: 239 SCLSPYLALGIVSPRQCFNRLRAE----CPDLLERSDSGAFTWLNELIWREFYRHLLVAY 294
Query: 301 P-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P P +G W E AW+QG+TGYP+VDA MR+L TGW+H+R+R++ +
Sbjct: 295 PRLCQHHPFIGWTDAVRWNHSEQQLIAWQQGQTGYPIVDAAMRQLNETGWMHNRLRMISA 354
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L + WR G +YF LLD DL ++ GWQ+ + T D + RI NP +G +F
Sbjct: 355 SFLVKDLLIDWRHGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERF 414
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
D G ++RRWLPELA +P IH PW + Q NYP P+V
Sbjct: 415 DKEGTFIRRWLPELAAVPDSDIHQPWRWAQRQQQHL------NYPPPLV 457
>gi|14517649|gb|AAK64295.1|AF159509_2 DNA-photolyase [[Brevibacterium] flavum]
Length = 482
Score = 218 bits (555), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 154/457 (33%), Positives = 222/457 (48%), Gaps = 50/457 (10%)
Query: 4 RGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHL 63
R +++WFR DLR+ DN AL G VI +FI +E G +RWW + SL+ L
Sbjct: 20 RPPTLLWFRDDLRLSDNAALKWAADHGPVIGLFI---DETINRSIGAAARWWREQSLNAL 76
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLY-DPLSLVRDHRAKEALTAQ 122
L G L+ +R+ + + L ++V + +N Y PL V D K+ L Q
Sbjct: 77 AQDLSFYGVPLL-RRTGNPLEILPKIVSEMEVKAVTWNRRYHQPLCEV-DATLKKNLRDQ 134
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAF----WEKCLSMPFDP-DAPLLPPKRINS 177
GI V S LL EPW+V+ A G P+ F F WE ++ + P +
Sbjct: 135 GIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARGHAYETVKNNVTVPSHLTG 194
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
+ P + E E + L+ +PG NA + L F+ L +Y + R
Sbjct: 195 PEGVELP----IPEMEQPFWATTLVKEC-APGEKNASEKLFDFLEH-LQDYPQARDSLAR 248
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
+ TS LS HL FGE+S+ +V WA E E LFLK + R+++ +
Sbjct: 249 SATSKLSAHLRFGEISIHRV----------WA-ETAAIDSEGTELFLKELLWRDFAWHRL 297
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGY----------------------FKAWRQGRTGYP 335
+ P+ + + F W D AWR G+TG P
Sbjct: 298 YALPHMDTQNVRMQFNRFGWSWDPSEKDKLNTPSTPLIPTKADQFHEDLAAWRAGKTGIP 357
Query: 336 LVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQY 395
LVDAGMRELWATG +H+R+R+VV+SF K LQ+ WR G ++FW+TL+DAD S+A WQ+
Sbjct: 358 LVDAGMRELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQW 417
Query: 396 ISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPE 432
+G+ D + RI NP + KFDP+ Y+RRW+PE
Sbjct: 418 AAGSGDDASPYFRIFNPVTQAKKFDPDETYIRRWVPE 454
>gi|145294801|ref|YP_001137622.1| hypothetical protein cgR_0748 [Corynebacterium glutamicum R]
gi|140844721|dbj|BAF53720.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 482
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 154/457 (33%), Positives = 222/457 (48%), Gaps = 50/457 (10%)
Query: 4 RGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHL 63
R +++WFR DLR+ DN AL G VI +FI +E G +RWW + SL+ L
Sbjct: 20 RPPTLLWFRDDLRLSDNAALKWAADHGPVIGLFI---DETINRSIGAAARWWREQSLNAL 76
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLY-DPLSLVRDHRAKEALTAQ 122
L G L+ +R+ + + L ++V + +N Y PL V D K+ L Q
Sbjct: 77 AQDLSFYGVPLL-RRTGNPLEILPKIVSEMEVKAVTWNRRYHQPLCEV-DATLKKNLRDQ 134
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAF----WEKCLSMPFDP-DAPLLPPKRINS 177
GI V S LL EPW+V+ A G P+ F F WE ++ + P +
Sbjct: 135 GIEVHSHPGFLLTEPWEVSTATGTPYKVFTPFSKAAWEVARGHAYETVKNNVTVPSHLTG 194
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
+ P + E E + L+ +PG NA + L F+ L +Y + R
Sbjct: 195 PEGVELP----IPEMEQPFWATTLVKEC-APGEKNASEKLFDFLEH-LQDYPQARDSLAR 248
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
+ TS LS HL FGE+S+ +V WA E E LFLK + R+++ +
Sbjct: 249 SATSKLSAHLRFGEISIHRV----------WA-ETAAIDSEGTELFLKELLWRDFAWHRL 297
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGY----------------------FKAWRQGRTGYP 335
+ P+ + + F W D AWR G+TG P
Sbjct: 298 YALPHMDTQNVRMQFNRFGWSWDPSEKDKLNTPSTPLIPTKADQFHEDLAAWRAGKTGIP 357
Query: 336 LVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQY 395
LVDAGMRELWATG +H+R+R+VV+SF K LQ+ WR G ++FW+TL+DAD S+A WQ+
Sbjct: 358 LVDAGMRELWATGSMHNRVRMVVASFLTKNLQIHWRHGEEWFWETLVDADPASNAFNWQW 417
Query: 396 ISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPE 432
+G+ D + RI NP + KFDP+ Y+RRW+PE
Sbjct: 418 AAGSGDDASPYFRIFNPVTQAKKFDPDETYIRRWVPE 454
>gi|449145685|ref|ZP_21776486.1| deoxyribodipyrimidine photolyase [Vibrio mimicus CAIM 602]
gi|449078633|gb|EMB49566.1| deoxyribodipyrimidine photolyase [Vibrio mimicus CAIM 602]
Length = 469
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 153/472 (32%), Positives = 238/472 (50%), Gaps = 32/472 (6%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFRRDLR DN AL A + +G V AV++ P++ ++ + ++ LS L
Sbjct: 2 KLVWFRRDLRSFDNTALTAAIESGETVAAVYVATPQQWLQHHLAPIQADFIWRRLSALQQ 61
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L ++ L ++ D + ++ ++ KA A Q+ N Y+ RD R ++ L Q
Sbjct: 62 ELAAINIPLFYQQVADFREAAHAVNQLAKALNANQVLANRDYELDEQQRDLRTEQFLAEQ 121
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
GI+ +F+ + P V QG+ F F F LS+ F P P++P R +S
Sbjct: 122 GISWSAFDDKCILPPGSVRTKQGEFFKVFTPFKRAWLSL-FQP--PVIP--RNHSAAPWD 176
Query: 183 CPSD--TLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
P++ LV+ + + + W + L F + +Y + R T
Sbjct: 177 VPNEFSHLVWNTDQVFNYPRVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFPAREGT 236
Query: 241 SFLSPHLHFGEVSVRK-VFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
S LSP+L G +S R+ V L R +S +EG ++L + RE+ +++
Sbjct: 237 SVLSPYLAIGALSARQCVARLYRESAMSALSEG-------AQVWLSELIWREFYQHLVAI 289
Query: 300 HP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
P S R L W D F+ W +G+TGYP+VDA MR+L TGW+H+R+R++V
Sbjct: 290 EPNISKSRDFLEWGARLEWWNDSEKFQRWCEGQTGYPIVDAAMRQLNQTGWMHNRLRMIV 349
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP +G K
Sbjct: 350 ASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEK 409
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAP--ESVLQAAGIELGSNYPFPIV 468
FDPNG+++RRW+PEL + + +IH PW P SVL YP P+V
Sbjct: 410 FDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVNSVL----------YPAPLV 451
>gi|83953690|ref|ZP_00962411.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. NAS-14.1]
gi|83841635|gb|EAP80804.1| deoxyribodipyrimidine photolyase [Sulfitobacter sp. NAS-14.1]
Length = 473
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 144/438 (32%), Positives = 222/438 (50%), Gaps = 22/438 (5%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHS 59
MS + ++W+RRDLR+ D+PAL+A AG VI VFI +++ G +W L
Sbjct: 1 MSDKSPILLWYRRDLRLSDHPALSAAANAGRPVIPVFI---KDKSVDALGAAPKWRLGLG 57
Query: 60 LSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
+ L SL + + L+ R D++ L ++K TGA ++++ LYDP S+ RD + KE L
Sbjct: 58 IGALADSLEGVSSRLIL-REGDALEVLQALIKETGAGTVYWSRLYDPDSVKRDSKIKETL 116
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGD 179
GI +SF +++EPW V G + + FW + +P PL P + + +
Sbjct: 117 CNDGIEAKSFGGHVMFEPWTVETKAGDCYKVYTPFWNNVKTRDVEP--PLSAPSDLPAPE 174
Query: 180 MSRCPSDTLVFED---ESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
S SD L D ++G++ + G A L F+ + +Y + R
Sbjct: 175 -SWPDSDALDGWDLGAAMDRGADVVRPFV-CLGEKAAQSRLGAFMAHGVADYKQTRDIPG 232
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
+ TS LS +L GE+S + +H A G + FLK + RE++ ++
Sbjct: 233 TDGTSNLSENLSLGEISPHQCWHA--------AQRALHDGKQGAETFLKELVWREFAYHL 284
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDE--GYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
+ P F W DE KAW+QGRTG P VDA MREL+ TG +H+R
Sbjct: 285 MHHTPRMLTDNWREEWDAFPWNEDERRAEVKAWKQGRTGEPFVDAAMRELYVTGRMHNRG 344
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R++V+S+ K L WR G K+F L+D D S+A+GWQ+ +G+ PD + R+ NP+
Sbjct: 345 RMIVASYLTKHLMCHWRIGQKWFEHCLIDWDPASNAMGWQWAAGSGPDASPYFRVFNPET 404
Query: 415 EGYKFDPNGEYVRRWLPE 432
+ KFD N +Y RW+ E
Sbjct: 405 QLDKFDKNRDYASRWIAE 422
>gi|393775732|ref|ZP_10364042.1| deoxyribodipyrimidine photo-lyase [Ralstonia sp. PBA]
gi|392717262|gb|EIZ04826.1| deoxyribodipyrimidine photo-lyase [Ralstonia sp. PBA]
Length = 533
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 154/477 (32%), Positives = 240/477 (50%), Gaps = 33/477 (6%)
Query: 8 IVWFRRDLRVEDNPALA-AGVRAGAVIAVFIWAPE-----EEGPYYPGRVSRWWLKHSLS 61
+VWFRRDLR D+ AL A + V+ VF++ P+ P G +L ++
Sbjct: 32 LVWFRRDLRCVDHAALHHALAQCETVLCVFVFDPDLLEPLARAPDRAGHRRVAFLHGCVA 91
Query: 62 HLDSSLRSLGTSLVTK--RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
LD++L G L+ + R+ +S++SL+E + G LF+N Y+P ++ RD L
Sbjct: 92 ALDAALAVSGNRLIVQHGRAVESLASLVETL---GIDALFYNRDYEPAAIARDEAVTARL 148
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSMPFDPDAPLLPPKRIN 176
A F +++E +V AQGQPF+ F + W + L+ A L P +
Sbjct: 149 QALSCVCFDFKDQVIFERGEVLTAQGQPFSVFTPYKNAWLRRLT-----PADLAPRDVVL 203
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARA-WSPGWSNADKALTTFINGPLIEYSKNRRKA 235
+ P+ ++ G +A +PG + A+ L F+ L +Y R
Sbjct: 204 RAAPAAEPTAAATMPTLAQLGFDAAPETPPLAPGSAAAEALLDDFL-ARLDDYHVRRDFP 262
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
S+LS HL FG VS+R + + A++ AG +L + RE+
Sbjct: 263 AVRGPSYLSAHLRFGTVSIRTL--------AACAHQRMLAGSRGAETWLSELIWREFYMM 314
Query: 296 MSFNHPYSHE----RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLH 351
+ +HP +P +++ E F AW GRTGYPLVDA M +L TG++H
Sbjct: 315 ILAHHPRVAAGESFKPEYDRIRWAEGTAAEEAFAAWCAGRTGYPLVDAAMLQLNTTGYMH 374
Query: 352 DRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDN 411
+R+R+V +SF K L + WR G YF L D D ++ GWQ+ S + D + + RI N
Sbjct: 375 NRLRMVTASFLCKDLGIDWRRGEAYFAARLTDHDFAANNGGWQWASSSGCDAQPYFRIFN 434
Query: 412 PQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
P + +FDP G+++RR+LP+LA+LP IH PW A +VL AG++LG +YP+P+V
Sbjct: 435 PVTQSTRFDPQGKFIRRYLPQLAKLPDRDIHAPWAASATVLAEAGVKLGKDYPYPLV 491
>gi|315499875|ref|YP_004088678.1| DNA photolyase fad-binding protein [Asticcacaulis excentricus CB
48]
gi|315417887|gb|ADU14527.1| DNA photolyase FAD-binding protein [Asticcacaulis excentricus CB
48]
Length = 484
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 150/487 (30%), Positives = 240/487 (49%), Gaps = 35/487 (7%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYP-GRVSRWWLKHSLSHL 63
+I+WFR DLR++D+ + A + +G+ V+ V+I+ +E+ P G S+WWL SL L
Sbjct: 4 TTILWFRSDLRLQDHEGVEATLNSGSPVVPVYIY--DEQLAQRPLGAASKWWLDRSLRSL 61
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
D SLR+ G L+ + + +++ L ++ AT+L + ++P D + +AL G
Sbjct: 62 DQSLRARGARLIVLKGS-ALAQLKRLIGQVSATRLIASRTFEPKIDAFDAQLSKAL---G 117
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWE-------------KCLSMPFDPDAPLL 170
I V FN LL +P + G P+ F F+ K L+ P+ AP
Sbjct: 118 IPVEIFNTHLLSDPTQIRTGDGNPYKVFTPFYRALLARGAARGHARKALATPWP--APAE 175
Query: 171 PPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSK 230
P+ ++ + P+ TL D SE W+PG A + L+ F+ L Y+
Sbjct: 176 WPESVDIDALGLKPALTLSGHDWSEGFD------VWTPGEDGAHQRLSAFLRSGLKGYAP 229
Query: 231 NRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLR 290
+R + D TS LSPHL FGE+S +V + + + A + + F + R
Sbjct: 230 DRDRPDLDITSRLSPHLRFGEISPHRV-----LHEAEAHAAAHPALSDDLEKFRAELAWR 284
Query: 291 EYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWL 350
++S + P W D +AW++G TGY LVDAGMR+LW TG++
Sbjct: 285 DFSYNILQLQPELDRVNFKSAFDAMPWRDDPAGLRAWQRGETGYSLVDAGMRQLWRTGFM 344
Query: 351 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRID 410
H+R+R+V +SF K L + WR G ++FWDTL+DAD S+ WQ+++G+ D + RI
Sbjct: 345 HNRVRMVCASFLSKHLLIDWRQGEQWFWDTLVDADPASNTASWQWVAGSGADAAPYFRIF 404
Query: 411 NPQFEGYKFDPNGEYVRRWLPELA-RLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVR 469
NP + KFDP G Y RR++ ++ H + AG+ ++ P +
Sbjct: 405 NPLTQAEKFDPKGAYRRRFVSGFTEKIAGAASAHHQKFERDLFDFAGVSASNSKGAPRLI 464
Query: 470 IDAAKCR 476
+D A R
Sbjct: 465 VDHAVAR 471
>gi|113867687|ref|YP_726176.1| deoxyribodipyrimidine photolyase [Ralstonia eutropha H16]
gi|113526463|emb|CAJ92808.1| deoxyribodipyrimidine photolyase [Ralstonia eutropha H16]
Length = 513
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 157/487 (32%), Positives = 252/487 (51%), Gaps = 36/487 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPEEEGPYYP-GR-VSRW--WLKHSLSH 62
+VWFRRDLR +D+ AL ++ V VF++ E P GR V R ++ SL
Sbjct: 29 LVWFRRDLRADDHAALHYALKHCRQVWCVFVFDREILDPLIARGRKVDRRVEFILRSLEP 88
Query: 63 LDSSLRSLGTSLVTKRSTDSVS--SLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
L +L G L+ D ++ ++ + A +F NH Y+P + RD ++AL
Sbjct: 89 LRRTLTDAGGGLIV---LDDIARDAIPRLAAELDADAVFTNHDYEPAAKRRDTAVRQALA 145
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSMPFDPDAPLLPPKRINS 177
+ + +F +++E ++ QGQPF+ FA + W + + PFD L P ++
Sbjct: 146 SDSRVLFTFKDQVIFEADELLTGQGQPFSVFAPYKNAWLRAVQ-PFD-----LRPYPVDQ 199
Query: 178 --GDMSRCPSD----TLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKN 231
G ++ P + + D SN LA P S+ +AL + +Y
Sbjct: 200 YLGALAPVPRQYQKASPMLHDLGFAASN--LAEIAMPTGSDGARALFDEFIDRIGDYGYR 257
Query: 232 RRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLRE 291
R S+LS HL FG +S+R L R + G+++ +V +L + R+
Sbjct: 258 RDFPSLRGPSYLSVHLRFGTISIRT---LARAALDAVLRGGSESAGAAV--WLSELIWRD 312
Query: 292 YSRYMSFNHPYSHE----RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWAT 347
+ + +HP + RP L++ V + YF+AW +TGYPLVDA M ++ +
Sbjct: 313 FYFMILHHHPRVADGKSFRPEYDALQWVDSVTGDKYFQAWCDAQTGYPLVDAAMLQIRQS 372
Query: 348 GWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFD 407
G++H+R+R+V +SF VK L + WR G +YF D L D D ++ GWQ+ + T D + +
Sbjct: 373 GYMHNRLRMVTASFLVKDLGVDWRRGEQYFADQLNDFDFSANNGGWQWAASTGCDAQPYF 432
Query: 408 RIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPI 467
RI NP + KFDP G ++R++LP LA++P ++IH PW AP +VL AG++LG NYP PI
Sbjct: 433 RIFNPVKQSEKFDPQGRFIRKYLPVLAQMPDQYIHAPWTAPVNVLATAGVKLGENYPPPI 492
Query: 468 VRIDAAK 474
V+ + A+
Sbjct: 493 VQHEVAR 499
>gi|332529962|ref|ZP_08405912.1| deoxyribodipyrimidine photolyase [Hylemonella gracilis ATCC 19624]
gi|332040435|gb|EGI76811.1| deoxyribodipyrimidine photolyase [Hylemonella gracilis ATCC 19624]
Length = 501
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 161/515 (31%), Positives = 249/515 (48%), Gaps = 38/515 (7%)
Query: 7 SIVWFRRDLRVEDNPAL--AAGVRAGAVIAVFIW--APEEEGPYYPGRVSRWWLKHSLSH 62
++VW R DLR+ DNPAL AA +R G VIAV++ A P P R+ + + L
Sbjct: 3 ALVWLRNDLRLHDNPALHAAAELRQG-VIAVYVHCDAYVTRFPIAPSRLD--FARRHLHL 59
Query: 63 LDSSLRSLGTSLVTKRS---TDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
L + L +L R ++ +L + + G + FFN Y L RD + + L
Sbjct: 60 LTTELARHHIALQVLRVAQVSEIAPALARLARDHGISHCFFNAEYPLDELNRDQQVNQLL 119
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGD 179
AQG+ V+ + ++ P V + G P+ F + K L + A LLP + + +
Sbjct: 120 RAQGVTVKRCHDRVVIPPGKVRNEAGTPYKVFTPYKRKWLQL-----ASLLPLRPVEAPA 174
Query: 180 MSR---CPSDTLVFEDESEKGSNAL-LARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
CPS + D +G L+ W G + A L F+ L Y R
Sbjct: 175 HQAALPCPSASAQDIDHLFEGQELRDLSTPWPAGEAVARARLQRFVAQDLDHYQTQRDLP 234
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
A TS LSP+L G +S R+ V + G+ + V+ ++ + RE+ ++
Sbjct: 235 AVAGTSGLSPYLAIGALSPRQALAAVLSR-----TGGDWNANAGVSTWISELIWREFYQH 289
Query: 296 MSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
+ ++P R + H + F W F WRQGRTG P++DA MR+L ATGW+H+R+
Sbjct: 290 LVVDYPQVCMHRAMQVHTEAFPWRQAPEDFALWRQGRTGIPIIDAAMRQLNATGWMHNRL 349
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R++V+ F K LQ+ WRWG +YF + L+D D ++ GWQ+ + T D + RI NP
Sbjct: 350 RMLVAMFLTKNLQIDWRWGERYFMEQLIDGDFAANNGGWQWSASTGTDAAPYFRIFNPIT 409
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
+ +FDP G+++R W+PELA L + IH P AP +G G YP P+V + A++
Sbjct: 410 QSQRFDPRGQFIRLWVPELAGLSDKAIHAPHLAP------SGPPPG--YPAPMVDLGASR 461
Query: 475 CRLDEALSEMWQQEAASRAAIEN-----GTEEGLG 504
+ + Q A A ++ GT G G
Sbjct: 462 KATIALFASLGQAPAGGSDAADDIPAAPGTGAGPG 496
>gi|343403429|dbj|BAK61519.1| cryptochrome1a [Glycine soja]
gi|343403432|dbj|BAK61521.1| cryptochrome1a [Glycine soja]
gi|343403435|dbj|BAK61523.1| cryptochrome1a [Glycine soja]
gi|343403438|dbj|BAK61525.1| cryptochrome1a [Glycine soja]
gi|343403441|dbj|BAK61527.1| cryptochrome1a [Glycine soja]
gi|343403444|dbj|BAK61529.1| cryptochrome1a [Glycine soja]
gi|343403447|dbj|BAK61531.1| cryptochrome1a [Glycine soja]
gi|343403450|dbj|BAK61533.1| cryptochrome1a [Glycine soja]
gi|343403453|dbj|BAK61535.1| cryptochrome1a [Glycine soja]
Length = 119
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 103/119 (86%), Positives = 113/119 (94%)
Query: 12 RRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLG 71
RRDLR+EDNPAL AGVRAGAV+AVF+WAPEEEG YYPGRVSRWWLK+SL+HL SSLR+LG
Sbjct: 1 RRDLRIEDNPALTAGVRAGAVVAVFVWAPEEEGQYYPGRVSRWWLKNSLAHLHSSLRNLG 60
Query: 72 TSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFN 130
T L+TKRSTD++SSLLEVVK+TGATQLFFNHLYDPLSLVRDHRAKE LTAQGI VRSFN
Sbjct: 61 TPLITKRSTDTLSSLLEVVKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQGITVRSFN 119
>gi|383763855|ref|YP_005442837.1| deoxyribodipyrimidine photolyase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
gi|381384123|dbj|BAM00940.1| deoxyribodipyrimidine photolyase [Caldilinea aerophila DSM 14535 =
NBRC 104270]
Length = 475
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 157/484 (32%), Positives = 229/484 (47%), Gaps = 29/484 (5%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+I W RRDLR+ DN AL A + A ++ F+ P Y G + +L L LD+
Sbjct: 4 AIWWIRRDLRLTDNQALTAALTRAAQIVPCFVLDPRLLNSSYAGERRKAFLFSGLRVLDA 63
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL-----T 120
LR G L+ R D + L + +GA ++ Y P + RD AL
Sbjct: 64 DLRRRGGRLIV-RCGDPAAVLSRLAAESGACAVYAERDYSPYARCRDEAVARALPIPLVL 122
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLP-PKRINSGD 179
G+ +R +A L G P+ F + + S P +LP P R+
Sbjct: 123 TDGLTIRRPDALL--------KDDGTPYTVFTPYSRRWRSYPPVGAHEILPAPARLAV-- 172
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFING---PLIEYSKNRRKAD 236
+++V E ++ + G + A L F G P+ Y++ R D
Sbjct: 173 -----PESIVGEPIPKQPHLDDDTGPFPSGEAEAQARLRRFTTGDEAPIYAYAQARDFPD 227
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
+TS LSP+L FG +S R+ + AN + G E+ +L + R++ +
Sbjct: 228 LDSTSKLSPYLRFGMLSARQAALAAYQAMDAAANAEQRTGAET---WLTELIWRDFYYSI 284
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
++ P+ W + +F AW G TGYP +DA MR+L ATGW+H+R R+
Sbjct: 285 LYHFPHVARGCFQRAYDAIIWENNPTHFAAWCAGLTGYPFIDAAMRQLAATGWMHNRARM 344
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
V+SF VK L + WRWG K+F LLD DL ++ GWQ+ +G D + RI NP +G
Sbjct: 345 AVASFLVKDLLIDWRWGEKWFMQRLLDGDLAANNGGWQWSAGVGTDAAPYFRIFNPTAQG 404
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFDP G Y+RRW+PEL +P +IH PW P S AG +G NYP PIV A+ R
Sbjct: 405 QKFDPRGVYIRRWVPELRLVPDRYIHEPWRMPRSEQMRAGCIIGQNYPAPIVDHAVARQR 464
Query: 477 LDEA 480
+ EA
Sbjct: 465 VLEA 468
>gi|238756042|ref|ZP_04617366.1| Deoxyribodipyrimidine photo-lyase [Yersinia ruckeri ATCC 29473]
gi|238705767|gb|EEP98160.1| Deoxyribodipyrimidine photo-lyase [Yersinia ruckeri ATCC 29473]
Length = 479
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 148/477 (31%), Positives = 229/477 (48%), Gaps = 24/477 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++WFR DLRV DN AL A + VIAVFI P++ + +++ +L L
Sbjct: 5 LIWFRHDLRVTDNLALHAACQDPQAQVIAVFIATPQQWAAHNMSPKQATFIQQNLQCLQQ 64
Query: 66 SLRSLGTSLVTKRSTDSVSS---LLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L L + D +S L + +LF+NH Y+ RD +++L Q
Sbjct: 65 ALALRSIPLYYHQCHDFDASRRWLAAFSREKQVDKLFYNHQYELNERRRDAELEDSLRGQ 124
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
+A + ++ LL P V G + + F + D +P R G+
Sbjct: 125 -VACQGYHDSLLLAPGSVLTGNGDMYKIYTPFRRAFIQRLLISDCQCVPAPRAR-GEPIT 182
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
F+ +E + L G A + L F P+ +Y + R A TS
Sbjct: 183 TIQPLAPFDYPTENVDSVLF----PAGEEAALQRLRQFCREPVRDYHQQRDLPAIAGTSQ 238
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP- 301
LSP+L G++S R+ F+ +R++ + + D +L + RE+ R++ +P
Sbjct: 239 LSPYLAIGQLSPRQCFNRLRVE----CPDMLEQPDSGAFSWLNELIWREFYRHLLVAYPR 294
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
RP +G W D +AW+QG TGYP+VDA MR++ ATGW+H+R+R++ +SF
Sbjct: 295 LCQHRPFIGWTDEVRWNTDAERLQAWQQGMTGYPIVDAAMRQMNATGWMHNRLRMITASF 354
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L + WR G +YF LLD DL ++ GWQ+ + T D + RI NP +G +FD
Sbjct: 355 LVKDLLVDWRQGERYFMSKLLDGDLAANNGGWQWAASTGTDSAPYFRIFNPTTQGERFDK 414
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
+G ++R WLPELA +P IH PW + Q +YP P+V D + RLD
Sbjct: 415 HGVFIRHWLPELAAVPASDIHQPWRWAQRQQQHL------DYPLPMV--DHKQARLD 463
>gi|254284783|ref|ZP_04959750.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae AM-19226]
gi|417818812|ref|ZP_12465432.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE39]
gi|421349744|ref|ZP_15800113.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-25]
gi|423938868|ref|ZP_17732353.1| DNA photolyase family protein [Vibrio cholerae HE-40]
gi|423968686|ref|ZP_17735903.1| DNA photolyase family protein [Vibrio cholerae HE-46]
gi|150425568|gb|EDN17344.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae AM-19226]
gi|340043526|gb|EGR04484.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE39]
gi|395956361|gb|EJH66955.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-25]
gi|408664649|gb|EKL35479.1| DNA photolyase family protein [Vibrio cholerae HE-40]
gi|408667250|gb|EKL38000.1| DNA photolyase family protein [Vibrio cholerae HE-46]
Length = 469
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 146/463 (31%), Positives = 232/463 (50%), Gaps = 28/463 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFRRDLR DN AL A + +G V A++I PE+ ++ + + L+ L
Sbjct: 3 LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQE 62
Query: 67 LRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L +L L ++ D + ++ ++ K ATQ+ N Y+ RD A++ L+ QG
Sbjct: 63 LAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLSEQG 122
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I +F+ + P V QG+ F F F L++ F P P++ R +
Sbjct: 123 ITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTL-FQP--PVIGKNR--PAALWNV 177
Query: 184 PSDT--LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
PS LV+ E + + W+ + L F + +Y + R TS
Sbjct: 178 PSALAELVWHPEQTFDYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTS 237
Query: 242 FLSPHLHFGEVSVR----KVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
LSP+L G +S R +++H + ++S E ++L + RE+ +++
Sbjct: 238 SLSPYLAIGVLSARQCVARLYHESSMGELS----------EGAQVWLSELIWREFYQHLV 287
Query: 298 FNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
P S R + W D F+ W +G+TGYP+VDA MR+L TGW+H+R+R+
Sbjct: 288 AIEPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+V+SF K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP +G
Sbjct: 348 IVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQG 407
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAP--ESVLQAAGI 457
KFDPNG+++RRW+PEL + + +IH PW P SVL A +
Sbjct: 408 EKFDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVNSVLYPARL 450
>gi|309791051|ref|ZP_07685587.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG-6]
gi|308226906|gb|EFO80598.1| Deoxyribodipyrimidine photo-lyase [Oscillochloris trichoides DG6]
Length = 459
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 156/468 (33%), Positives = 226/468 (48%), Gaps = 33/468 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA--VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
I WFRRDLR+ DNPAL+A A V+ V+I P + +L L LD+
Sbjct: 3 IHWFRRDLRLSDNPALSAAALASGGHVLPVYILDPTLLNGLWASPARSAFLIAGLRALDA 62
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L+ G L+ R + V++LL +V TGA+ + +N Y P S RD + AL A G A
Sbjct: 63 QLQHHGLRLIV-RHGEPVATLLHLVAETGASAVTWNRDYSPYSRRRDQAIEAALHAAGCA 121
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSMP-FDP-DAPLLPPKRINSGDM 180
V+ + + P + P++ + + W L+ P AP+L P R +
Sbjct: 122 VQHTHDVAICPPDQILTKNATPYSVYTPYARQWRTWLAHADLRPVAAPILQPCR--DLPV 179
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
S D L G A A L F L Y+ R T
Sbjct: 180 SHAIPDLLAPHPLPPAGELA------------AQTILDEFTRTSLRTYATQRDLPAVPGT 227
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP+L FG ++VR+ V+ A+ G A + ++ + R++ + F+H
Sbjct: 228 SRLSPYLRFGMIAVRQCL------AVAQAHPGPGA-----DTWIAELAWRDFYIQVLFHH 276
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P+ +W D F AW G TGYP+VDA MR+L GW+H+R R++V+S
Sbjct: 277 PHVLRGAFKPQYDDLAWENDPDLFAAWCAGHTGYPMVDAAMRQLQQEGWMHNRARMIVAS 336
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L + WRWG +YF LLD D ++ GWQ+ + T D + + RI NP +G KFD
Sbjct: 337 FLTKDLLIDWRWGERYFMQMLLDGDPAANNGGWQWAASTGTDAQPYFRIFNPTCQGQKFD 396
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
P+G+Y+RR+LPELA +P IH P S AG+ +G +YP P+V
Sbjct: 397 PHGDYIRRYLPELAGVPNHKIHTPHLLSASEQMRAGVRIGHDYPAPLV 444
>gi|262164645|ref|ZP_06032383.1| deoxyribodipyrimidine photolyase [Vibrio mimicus VM223]
gi|262027025|gb|EEY45692.1| deoxyribodipyrimidine photolyase [Vibrio mimicus VM223]
Length = 469
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 153/472 (32%), Positives = 236/472 (50%), Gaps = 32/472 (6%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFRRDLR DN AL A + +G V AV++ P++ ++ + ++ LS L
Sbjct: 2 KLVWFRRDLRSFDNTALTAAIESGETVAAVYVATPQQWLQHHLAPIQADFIWRRLSALQQ 61
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L ++ L ++ D + ++ ++ KA A Q+ N Y+ RD R ++ L Q
Sbjct: 62 ELAAINIPLFYQQVADFREAAHAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLAEQ 121
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
GI+ +F+ + P V QG F F F LS+ F P P++P R +S
Sbjct: 122 GISWSAFDDKCILPPGSVRTKQGDFFKVFTPFKRAWLSL-FQP--PVIP--RNHSAAPWD 176
Query: 183 CPSD--TLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
P++ LV+ + + + W + L F + +Y + R T
Sbjct: 177 VPNEFSHLVWNTDQVFNYPRVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFPAREGT 236
Query: 241 SFLSPHLHFGEVSVRK-VFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
S LSP+L G +S R+ V L R +S +EG ++L + RE+ +++
Sbjct: 237 SVLSPYLAIGALSARQCVARLYRESAMSALSEG-------AQVWLSELIWREFYQHLVAI 289
Query: 300 HP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
P S R L W D F+ W +G TGYP+VDA MR+L TGW+H+R+R++V
Sbjct: 290 EPNISKSRDFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMIV 349
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP +G K
Sbjct: 350 ASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEK 409
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAP--ESVLQAAGIELGSNYPFPIV 468
FDPNG+++RRW+PEL + + +IH PW P SVL YP P+V
Sbjct: 410 FDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVNSVL----------YPAPLV 451
>gi|417856580|ref|ZP_12501639.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes HKU
QMH11M0907901]
gi|387933535|gb|EIK41648.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes HKU
QMH11M0907901]
Length = 469
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 139/491 (28%), Positives = 226/491 (46%), Gaps = 30/491 (6%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
S++WFRRDLR++D ALA + + + + VF + E+ + S S+
Sbjct: 2 VSVMWFRRDLRIDDQKALAHAIASQSPTLCVFQFNKEQLNLLHSRNQSS--FITSVLAFR 59
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
L+ G L + + T ++FN+ +RD +A + GI
Sbjct: 60 KLLKCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGI 119
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
AV ++ L+ ++ + GQP+ F ++ + P + P+ P
Sbjct: 120 AVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYP--KETPIKVELSQGRWLNLETP 177
Query: 185 SDTL----VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
D L F+DE + A K L FI L Y NR T
Sbjct: 178 DDVLRTVESFKDEKYQDVATF---------DEASKQLNRFIQDQLAAYHANRDFPAQLGT 228
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP L G + +R V+H VR N G + FLK + R++ + +
Sbjct: 229 SRLSPFLRIGAIGIRTVYHAVR-------QAPNSLGQAT---FLKELAWRDFYNMVYVAY 278
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P +P+ WV + +F+ W++G+TGYP+VDA M +L TGW+H+R+R++V+S
Sbjct: 279 PDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVAS 338
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L WR G ++F L+D D S+ GWQ+ + T D + R+ NP + +FD
Sbjct: 339 FLTKDLLCDWRLGEQHFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRVFNPVTQSKRFD 398
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P GE+++ +LP+L +P +++H PW P+ + ++ +G++YP PIV D AK R
Sbjct: 399 PKGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIV--DHAKQREQAI 456
Query: 481 LSEMWQQEAAS 491
W +E A
Sbjct: 457 AKYEWAKEKAK 467
>gi|153212812|ref|ZP_01948448.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae 1587]
gi|422306345|ref|ZP_16393526.1| DNA photolyase family protein [Vibrio cholerae CP1035(8)]
gi|124116325|gb|EAY35145.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae 1587]
gi|408626618|gb|EKK99461.1| DNA photolyase family protein [Vibrio cholerae CP1035(8)]
Length = 469
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 147/459 (32%), Positives = 231/459 (50%), Gaps = 20/459 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFRRDLR DN AL A + +G V A++I PE+ ++ + + L+ L
Sbjct: 3 LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQE 62
Query: 67 LRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L +L L ++ D + ++ ++ K ATQ+ N Y+ RD A++ L+ QG
Sbjct: 63 LAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLSEQG 122
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I +F+ + P V QG+ F F F L++ F P P++ R +
Sbjct: 123 ITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTL-FQP--PVIGKNR--PAALWNV 177
Query: 184 PSDT--LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
PS LV+ E + + W+ + L F + +Y + R TS
Sbjct: 178 PSALAELVWHPEQTFDYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGTS 237
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+L G +S R+ + R+ S E + E ++L + RE+ +++ P
Sbjct: 238 SLSPYLAIGVLSARQC--VARLYHESSMGELS----EGAQVWLSELIWREFYQHLVAIEP 291
Query: 302 -YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
S R + W D F+ W +G+TGYP+VDA MR+L TGW+H+R+R++V+S
Sbjct: 292 NLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVAS 351
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP +G KFD
Sbjct: 352 FLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFD 411
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAP--ESVLQAAGI 457
PNG+++RRW+PEL + + +IH PW P SVL A +
Sbjct: 412 PNGDFIRRWVPELRSVSSAYIHQPWTYPAVNSVLYPARL 450
>gi|116871975|ref|YP_848756.1| deoxyribodipyrimidine photolyase [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|116740853|emb|CAK19973.1| deoxyribodipyrimidine photolyase [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 470
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 141/469 (30%), Positives = 226/469 (48%), Gaps = 30/469 (6%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S++WFRRDLR+ DN AL + +I +F PE+ + G S S+++
Sbjct: 2 TSVMWFRRDLRINDNKALYHASKENDLILLFQVNPEQ---FISGSPSHQAFFSSVANFKK 58
Query: 66 SL-RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ ++ ++ + + L + + A ++FFN RD A+ I
Sbjct: 59 EIDKNAHLQIMFGEPIELLKRLKDAIPAWD--KVFFNQDETGYGAKRDKAARAFFEYNNI 116
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS-MPFDPDAPLLPPKRINSGDMSRC 183
V +++ L+ +V + + F +++K + P +L P+ I ++
Sbjct: 117 TVHAYHDAYLHSAEEVKKTSTEYYKIFTPYYKKWREEIKETPFKSVLTPENIIKKEL--F 174
Query: 184 PSDTLVFE----DESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
P D FE D E L G A+ L FI L EY+K R DS
Sbjct: 175 PHDEEQFEKLIQDLPELDLKVL-------GEEAANTRLKNFIKRDLAEYAKARDIPDSDQ 227
Query: 240 TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFN 299
TS LS +L GE+S+R V W E +F K + R++ + +
Sbjct: 228 TSHLSRYLRTGEISIRTV----------WQALQQTKPTEGRAIFEKELCWRDFYNMIYVS 277
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P P+ + +F W + +FK W++G+TGYPLVDA MR+L TGW+H+R+R++ +
Sbjct: 278 FPNQKNEPIQENYRFIEWENNREFFKQWQEGKTGYPLVDAAMRQLKETGWMHNRLRMITA 337
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF K L + WR+G KYF L+D D S+ GWQ+ + T D + RI NP + KF
Sbjct: 338 SFLTKDLLIDWRYGEKYFQQMLIDYDPASNISGWQWAASTGTDAVPYFRIFNPTTQSEKF 397
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
DP+G+++R+++ EL+ LP ++IH P ES + + LG +YP PIV
Sbjct: 398 DPSGKFIRKYVEELSNLPDKFIHQPEKMSESQQKEHNLILGDDYPLPIV 446
>gi|331694491|ref|YP_004330730.1| deoxyribodipyrimidine photo-lyase [Pseudonocardia dioxanivorans
CB1190]
gi|326949180|gb|AEA22877.1| Deoxyribodipyrimidine photo-lyase [Pseudonocardia dioxanivorans
CB1190]
Length = 462
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 161/493 (32%), Positives = 232/493 (47%), Gaps = 46/493 (9%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S+VWFRRDLRV D P A +G A +A+F+ P P P R R +L L LD
Sbjct: 5 SVVWFRRDLRVRDQPIFLAAADSGPAALALFVLDPALLDPSGPAR--RTFLYGCLRALDD 62
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+L G L+ R D + V A GA + + P RD +EAL G
Sbjct: 63 AL---GGRLLVVRG-DPADVVPRVAAAVGAGTVHVAADFGPYGTRRDQAVEEALAVDGRE 118
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSM----PFDPDAPLLPPKRINSGDMS 181
+ + P V G PF F F P D A + + I+ D
Sbjct: 119 LVRTGSPYAVAPGRVTKDDGDPFRVFTPFRRTWSRQRRRGPADTSAATV--RWIDPSDEG 176
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
P + +DE L A PG A + F++ + Y ++R + D TS
Sbjct: 177 SGPRAVRIPDDEP------LDAALPDPGEDAAHRQWKAFLSDAVDRYGEDRNRPDVEGTS 230
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
+S +L +G + R + H +S G S + + RE+ + F P
Sbjct: 231 RMSVYLKWGCIHPRTMLH-----DLSRHRSG------SAETYRTELAWREFYADVLFRRP 279
Query: 302 ----YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
++++R DE F AWR+GRTG+P+VDAGMR+L A W+H+R+R++
Sbjct: 280 DSARHNYDRAFDALPSASGKRADE-LFAAWREGRTGFPIVDAGMRQLRAQAWMHNRLRMI 338
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V+SF VK L LPW WG ++F L+D DL S+ GWQ+ +G+ D + RI NP +G
Sbjct: 339 VASFLVKDLHLPWWWGARHFMQLLVDGDLASNQHGWQWTAGSGTDPAPYFRIFNPVTQGE 398
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
+FDP+G+YVRR++PELA +P +H PW P+ V YP PIV A +
Sbjct: 399 RFDPDGDYVRRFVPELADVPGRAVHQPWKLPDGV--------PDGYPQPIVDHRAER--- 447
Query: 478 DEALSEMWQQEAA 490
DEAL+ + +AA
Sbjct: 448 DEALARYERVKAA 460
>gi|153827504|ref|ZP_01980171.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae MZO-2]
gi|149738567|gb|EDM52922.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae MZO-2]
Length = 469
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 146/463 (31%), Positives = 232/463 (50%), Gaps = 28/463 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFRRDLR DN AL A + +G V A++I PE+ ++ + + L+ L
Sbjct: 3 LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQE 62
Query: 67 LRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L +L L ++ D + ++ ++ K ATQ+ N Y+ RD A++ L+ QG
Sbjct: 63 LAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLSEQG 122
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I +F+ + P V QG+ F F F L++ F P P++ R +
Sbjct: 123 ITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTL-FQP--PVIGKNR--PAALWDV 177
Query: 184 PSDT--LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
PS LV+ E + + W+ + L F + +Y + R TS
Sbjct: 178 PSTLAELVWHPEQTFDYPRVDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTS 237
Query: 242 FLSPHLHFGEVSVR----KVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
LSP+L G +S R +++H + ++S E ++L + RE+ +++
Sbjct: 238 SLSPYLAIGVLSARQCVARLYHESSMGELS----------EGAQVWLSELIWREFYQHLV 287
Query: 298 FNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
P S R + W D F+ W +G+TGYP+VDA MR+L TGW+H+R+R+
Sbjct: 288 AIEPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+V+SF K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP +G
Sbjct: 348 IVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQG 407
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAP--ESVLQAAGI 457
KFDPNG+++RRW+PEL + + +IH PW P SVL A +
Sbjct: 408 EKFDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVNSVLYPARL 450
>gi|238797755|ref|ZP_04641249.1| Deoxyribodipyrimidine photo-lyase [Yersinia mollaretii ATCC 43969]
gi|238718396|gb|EEQ10218.1| Deoxyribodipyrimidine photo-lyase [Yersinia mollaretii ATCC 43969]
Length = 481
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 147/469 (31%), Positives = 226/469 (48%), Gaps = 24/469 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR DLR+ DN AL A + V+AVFI P++ + +L+ +L L +
Sbjct: 5 LVWFRHDLRITDNLALHAACQDEQAKVMAVFIATPKQWAAHDMAPRQAAFLRQNLHLLQA 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLL---EVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L G L + D S+L + + LF+N Y+ + RD L +
Sbjct: 65 ALADRGIPLHYHQCADFQDSILWLADFCQQQQVDALFYNQQYELNEMRRDEAFTVQLNRR 124
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLP-PK-RINSGDM 180
IA SF+ +L P V + + F F + D +P PK R N+G +
Sbjct: 125 SIACHSFHDSVLLPPGSVQTGNNEMYKIFTPFRRAFIQRLMMSDCRSVPAPKARQNAGAI 184
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
+ P + + +S ++ + G A + L +F + +Y + R A T
Sbjct: 185 TLTPLEPFDYPQQSVD------SQLFPAGEEAALQRLRSFCREQVQDYLQQRDLPAVAGT 238
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP+L G +S R+ F+ +R + + ++ D +L + RE+ R++ +
Sbjct: 239 SGLSPYLALGILSPRQCFNRLRAE----CPDLLESSDSGAFTWLNELIWREFYRHLLVAY 294
Query: 301 P-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P P +G W E AW+QG TGYP+VDA MR+L TGW+H+R+R++ +
Sbjct: 295 PRLCQHHPFMGWTDAVRWNHSEPQLIAWQQGLTGYPIVDAAMRQLNETGWMHNRLRMITA 354
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L + WR G +YF LLD DL ++ GWQ+ + T D + RI NP +G +F
Sbjct: 355 SFLVKDLLIDWRLGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERF 414
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
D G ++RRWLPELA +P IH PW + Q NYP P+V
Sbjct: 415 DKEGTFIRRWLPELAAVPDRDIHQPWRWAQQQQQHL------NYPPPLV 457
>gi|94988861|ref|YP_596962.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS9429]
gi|94992751|ref|YP_600850.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS2096]
gi|94542369|gb|ABF32418.1| deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS9429]
gi|94546259|gb|ABF36306.1| Deoxyribodipyrimidine photolyase [Streptococcus pyogenes MGAS2096]
Length = 480
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 139/491 (28%), Positives = 226/491 (46%), Gaps = 30/491 (6%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
S++WFRRDLR++D ALA + + + + VF + E+ + S S+
Sbjct: 13 VSVMWFRRDLRIDDQKALAHAIASQSPTLCVFQFNKEQLNLLHSRNQSS--FITSVLAFR 70
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
L+ G L + + T ++FN+ +RD +A + GI
Sbjct: 71 KLLKCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDESGYGRLRDQKAAQFFKKNGI 130
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
AV ++ L+ ++ + GQP+ F ++ + P + P+ P
Sbjct: 131 AVHTYQDHYLHGSQEIINQSGQPYKVFTPYYRIWQNYP--KETPIKVELSQGRWLNLETP 188
Query: 185 SDTL----VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
D L F+DE + A K L FI L Y NR T
Sbjct: 189 DDVLRTVESFKDEKYQDVATF---------DEASKQLNRFIQDQLAAYHANRDFPAQLGT 239
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP L G + +R V+H VR N G + FLK + R++ + +
Sbjct: 240 SRLSPFLRIGAIGIRTVYHAVR-------QAPNSLGQAT---FLKELAWRDFYNMVYVAY 289
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P +P+ WV + +F+ W++G+TGYP+VDA M +L TGW+H+R+R++V+S
Sbjct: 290 PDQKTQPIQKAFSQIEWVNNPDWFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVAS 349
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L WR G ++F L+D D S+ GWQ+ + T D + R+ NP + +FD
Sbjct: 350 FLTKDLLCDWRLGEQHFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRVFNPVTQSKRFD 409
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
P GE+++ +LP+L +P +++H PW P+ + ++ +G++YP PIV D AK R
Sbjct: 410 PKGEFIKAYLPQLEHVPEKYLHEPWKMPKYLQESVSCIIGTDYPQPIV--DHAKQREQAI 467
Query: 481 LSEMWQQEAAS 491
W +E A
Sbjct: 468 AKYEWAKEKAK 478
>gi|417822869|ref|ZP_12469467.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE48]
gi|419836871|ref|ZP_14360311.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-46B1]
gi|421343000|ref|ZP_15793404.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-43B1]
gi|421355393|ref|ZP_15805724.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-45]
gi|423734313|ref|ZP_17707526.1| DNA photolyase family protein [Vibrio cholerae HC-41B1]
gi|424008597|ref|ZP_17751545.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-44C1]
gi|340048999|gb|EGR09915.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE48]
gi|395941567|gb|EJH52244.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-43B1]
gi|395950063|gb|EJH60682.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-45]
gi|408631158|gb|EKL03717.1| DNA photolyase family protein [Vibrio cholerae HC-41B1]
gi|408857421|gb|EKL97109.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-46B1]
gi|408865383|gb|EKM04786.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-44C1]
Length = 469
Score = 216 bits (551), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 147/459 (32%), Positives = 231/459 (50%), Gaps = 20/459 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFRRDLR DN AL A + +G V A++I PE+ ++ + + L+ L
Sbjct: 3 LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQE 62
Query: 67 LRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L +L L ++ D + ++ ++ K ATQ+ N Y+ RD A++ L+ QG
Sbjct: 63 LAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLSEQG 122
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I +F+ + P V QG+ F F F L++ F P P++ R +
Sbjct: 123 ITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTL-FQP--PVIGKNR--PAALWNV 177
Query: 184 PSDT--LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
PS LV+ E + + W+ + L F + +Y + R TS
Sbjct: 178 PSALAELVWHPEQTFDYPRVDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPVREGTS 237
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+L G +S R+ + R+ S E + E ++L + RE+ +++ P
Sbjct: 238 SLSPYLAIGVLSARQC--VARLYHESSMGELS----EGAQVWLSELIWREFYQHLVAIEP 291
Query: 302 -YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
S R + W D F+ W +G+TGYP+VDA MR+L TGW+H+R+R++V+S
Sbjct: 292 NLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVAS 351
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP +G KFD
Sbjct: 352 FLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFD 411
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAP--ESVLQAAGI 457
PNG+++RRW+PEL + + +IH PW P SVL A +
Sbjct: 412 PNGDFIRRWVPELRSVSSAYIHQPWTYPAVNSVLYPARL 450
>gi|422759394|ref|ZP_16813156.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322412229|gb|EFY03137.1| deoxyribodipyrimidine photolyase [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 474
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 134/488 (27%), Positives = 242/488 (49%), Gaps = 26/488 (5%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
S++WFRRDLR+ED ALA + + + + VF + ++ P ++ + S+
Sbjct: 2 VSVMWFRRDLRIEDQKALARAIASQSPTLCVFQFNQKQLSQ--PPSRNQSAVVASVLAFK 59
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGA-TQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L+ G L D ++ ++ + T ++FN+ RD +A + A+
Sbjct: 60 EELKERGIDLYVMHG-DLITCFEQLAQQLDQWTDVYFNYDESGFGRRRDQQAAQWFRAKK 118
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I + ++ L+ ++ + G+ + F ++ +P + P++ + +
Sbjct: 119 INIHAYQDHYLHGSQEIKNQSGEYYKVFTPYYRVWQCLP--KETPVVVDLSRGNWLSLKT 176
Query: 184 PSDTL-VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
P TL + E + N ++ A + L F++ L +Y R TSF
Sbjct: 177 PQATLELIETLKDTTFNDVMTV------KEAKERLNHFVDNQLADYDTTRDFPSRCGTSF 230
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSP+L G VS+R V+ V ++ + ++V FLK + R++ + +P
Sbjct: 231 LSPYLRLGMVSIRTVYQAV--------SQAPASSGQAV--FLKELAWRDFYHMVYVANPN 280
Query: 303 SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFF 362
+ + + W + FKAW++G+TGYP++DA M++L ATGW+H+R+R+VV+SF
Sbjct: 281 QKKLAIQEAFRHLEWDENPATFKAWKEGQTGYPIIDAAMKQLRATGWMHNRLRMVVASFL 340
Query: 363 VKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPN 422
K LQ+ WR G YF + L+D D S+ GWQ+ + D + RI NP +G +FDP+
Sbjct: 341 TKDLQIDWRLGEAYFQEQLIDYDAASNIGGWQWAASVGTDAVPYFRIFNPVTQGKRFDPD 400
Query: 423 GEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALS 482
G+++R +LP L +P ++++ PW PE++ ++ +G +YP P+V D A+ R
Sbjct: 401 GDFIRSYLPSLVSVPQKYLYEPWKMPEALQESIACIIGKDYPHPLV--DHAEQRKRAIAR 458
Query: 483 EMWQQEAA 490
W +E A
Sbjct: 459 YEWAKEKA 466
>gi|398794137|ref|ZP_10554321.1| deoxyribodipyrimidine photolyase [Pantoea sp. YR343]
gi|398209097|gb|EJM95781.1| deoxyribodipyrimidine photolyase [Pantoea sp. YR343]
Length = 475
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 158/490 (32%), Positives = 230/490 (46%), Gaps = 47/490 (9%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VW R DLR+ DN ALAA R VIA+FI P++ ++ +++ +L L +
Sbjct: 5 LVWLRNDLRINDNMALAAACRDSQATVIALFIATPQQWQQHHMAPKQAAFIQQNLLLLQT 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
SL G L + D S+ L E + LF+N+ Y+ RD RA++ L AQ
Sbjct: 65 SLAERGIPLHFHQCDDFAASIDYLAEFCQQQQVDALFYNYQYEINERERDARAEKRLDAQ 124
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAF-----------WEKCLSMPFDPD-APLL 170
G+ + F+ LL P V F F F +C P D AP+
Sbjct: 125 GVICQGFDDSLLLPPGSVQTGSNTMFKVFTPFSRAFVRRLHQGLPECYHAPKARDGAPIS 184
Query: 171 PPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSK 230
K+I + D C + F+D + G A K L F + Y
Sbjct: 185 IKKKIPAFDYP-CEA----FDDS-----------LFPAGEEAALKQLRHFAKQAVQHYPD 228
Query: 231 NRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLR 290
R TS LS +L G +S R+ H V + NEG +L + R
Sbjct: 229 QRDLPAIDGTSRLSAYLAIGVLSPRQCLHRVLKEHPDALNEG------KAFTWLNELIWR 282
Query: 291 EYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGW 349
E+ R++ P +P + + W +E + KAW+QG+TGYP+VDA MR+L GW
Sbjct: 283 EFYRHLMVAFPALCKHQPFVDWTRNVDWQQNEAHLKAWQQGKTGYPIVDAAMRQLNTLGW 342
Query: 350 LHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRI 409
+H+R+R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI
Sbjct: 343 MHNRLRMITASFLVKDLLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFRI 402
Query: 410 DNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV- 468
NP +G +FD GE++R+WLPEL +P IH P+ Q +L +YP PIV
Sbjct: 403 FNPTTQGERFDKQGEFIRQWLPELKEVPDSDIHQ----PQVWAQKNNKKL--DYPAPIVD 456
Query: 469 RIDAAKCRLD 478
DA K LD
Sbjct: 457 HKDARKKTLD 466
>gi|381201670|ref|ZP_09908795.1| deoxyribodipyrimidine photo-lyase [Sphingobium yanoikuyae XLDN2-5]
Length = 458
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 156/444 (35%), Positives = 234/444 (52%), Gaps = 29/444 (6%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+I+WFR+DLR+ D ALAA +AG VI ++I E + G SRWWL HSL+ L+
Sbjct: 5 TIIWFRQDLRLSDQAALAAAAQAGPVIPLYILDDESPRQWAMGGASRWWLHHSLASLNER 64
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
LR G+ L+ +R L +V K +GA + ++P R E A+ I +
Sbjct: 65 LRGKGSRLILRRGR-CADVLAQVAKDSGAQVVHAIRHHEPWW-----RNAEKAVARQIDL 118
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGD---MSRC 183
R + LL V G P+ + F + + + P P P+RI + +S
Sbjct: 119 RLHDGGLLLPVEAVRTGGGTPYRIYTPF-SRAVMLHMPPAPPQPAPQRIEAPSHWPVSDR 177
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
D + + + S WSPG A + L +F+ G + +Y+ R TS L
Sbjct: 178 LEDWKLLPRDPDWASG--FPTDWSPGEEGAKRYLDSFL-GEVGDYAVARDLPSQEGTSRL 234
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP-Y 302
SPHLHFGE+S KV+H R+ Q GD +V +LK + R+Y+ + P Y
Sbjct: 235 SPHLHFGEISPAKVWH--RVAQAP--------GDATV--YLKELIWRDYAHNQVWALPTY 282
Query: 303 SHE--RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
E +P + + G + AW++GRTGYP+VDAGMR+LW TGW+H+R+R++ +S
Sbjct: 283 GSENAQPAFDAMHWRDLREARGDWTAWKRGRTGYPIVDAGMRQLWQTGWMHNRVRMIAAS 342
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F +K L + WR G +FWDTL+DAD ++++ WQ+++G+ D F RI P + KFD
Sbjct: 343 FLIKHLLIDWRHGACWFWDTLVDADYANNSVNWQWVAGSGVDANLFTRIMAPLTQSDKFD 402
Query: 421 PNGEYVRRWLPELARLPTEWIHHP 444
+Y+R+W+PELA L IH P
Sbjct: 403 -AADYIRQWVPELAHLDDRVIHDP 425
>gi|229527954|ref|ZP_04417345.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 12129(1)]
gi|229334316|gb|EEN99801.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 12129(1)]
Length = 469
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 147/459 (32%), Positives = 231/459 (50%), Gaps = 20/459 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFRRDLR DN AL A + +G V A++I PE+ ++ + + L+ L
Sbjct: 3 LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQE 62
Query: 67 LRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L +L L ++ D + ++ ++ K ATQ+ N Y+ RD A++ L+ QG
Sbjct: 63 LAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLSEQG 122
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I +F+ + P V QG+ F F F L++ F P P++ R +
Sbjct: 123 ITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTL-FQP--PVIGKNR--PAALWDV 177
Query: 184 PSD--TLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
PS LV+ E + + W+ + L F + +Y + R TS
Sbjct: 178 PSAFAELVWHPEQTFDYPRVDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGTS 237
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+L G +S R+ + R+ S E + E ++L + RE+ +++ P
Sbjct: 238 SLSPYLAIGVLSARQC--VARLYHESSMGELS----EGAQVWLSELIWREFYQHLVAIEP 291
Query: 302 -YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
S R + W D F+ W +G+TGYP+VDA MR+L TGW+H+R+R++V+S
Sbjct: 292 NLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVAS 351
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP +G KFD
Sbjct: 352 FLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFD 411
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAP--ESVLQAAGI 457
PNG+++RRW+PEL + + +IH PW P SVL A +
Sbjct: 412 PNGDFIRRWVPELRSVSSAYIHQPWTYPAVNSVLYPARL 450
>gi|257868228|ref|ZP_05647881.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC30]
gi|257874499|ref|ZP_05654152.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC10]
gi|257802342|gb|EEV31214.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC30]
gi|257808663|gb|EEV37485.1| deoxyribodipyrimidine photo-lyase type I [Enterococcus
casseliflavus EC10]
Length = 469
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 150/489 (30%), Positives = 241/489 (49%), Gaps = 34/489 (6%)
Query: 8 IVWFRRDLRVEDNPALA---AGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHL 63
++WFR+DLR+EDN AL A ++A ++ VF ++ + P S + +++H
Sbjct: 1 MMWFRKDLRLEDNTALTEALASLQANDQLLCVFHLNDKQ---FLPDAPSHDYFFSAVAHF 57
Query: 64 DSSLR--SLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTA 121
+ + +L L+T T++ L +QL+FN RD E +
Sbjct: 58 IEAAKKQNLTIHLLTGTLTEAFDQLFACYPEW--SQLYFNFDNRGYGRKRDLYITELVEQ 115
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMP---FDPDAPLLPPKRINSG 178
+GI V SF L++P +V G + F +++K + +P + A L K +
Sbjct: 116 KGITVHSFEDHHLHQPTEVTKEDGTYYKKFTPYYKKWIQLPKPVYQKHA-LDFEKAAHFN 174
Query: 179 DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
D + T++ +E N + G A K L F+ L Y K+R
Sbjct: 175 DAPHFKAGTMLL---AELIKNRKTDFSTIVGEDYAHKQLQAFVQKRLAAYEKDRDIPSIK 231
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LSP L FG++S+RKV WA FLK + R++ + F
Sbjct: 232 GTSRLSPFLSFGQISIRKV----------WAACQEMPSSTGKATFLKELAWRDFYHMIYF 281
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
HP L+ + W DE W+ G+TGYP++DA MR+L TGW+H+R+R++V
Sbjct: 282 THPEQKNYELIEKYRNMDWQKDEEALNKWQAGQTGYPIIDAAMRQLNQTGWMHNRLRMIV 341
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF K L + WR G YF L+D D S+ GWQ+ + T D + RI NP +G K
Sbjct: 342 ASFLTKDLLIDWRQGEAYFARQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPITQGKK 401
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPW---NAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
FD +G ++++++PELA+LP +++H P+ N ++ LQ I LG++YP PIV + A+
Sbjct: 402 FDKDGTFIKQFVPELAQLPLKFVHEPYLMTNQEQADLQ---IVLGTDYPLPIVDHNEARK 458
Query: 476 RLDEALSEM 484
R + S++
Sbjct: 459 RALDLYSKI 467
>gi|22297968|ref|NP_681215.1| DNA photolyase [Thermosynechococcus elongatus BP-1]
gi|22294146|dbj|BAC07977.1| DNA photolyase [Thermosynechococcus elongatus BP-1]
Length = 480
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 145/437 (33%), Positives = 215/437 (49%), Gaps = 14/437 (3%)
Query: 8 IVWFRRDLRVEDNPALAAG-VRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+ W RRDLR+ DN LAA R V+ +F + P V +L L L +
Sbjct: 5 LFWHRRDLRLNDNLGLAAAYTRTPKVVGLFCFDPAILSASDIAAVRVAYLVGCLQALQEA 64
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
R LG S + R D L +V K GA + ++ +P RD AL +GIAV
Sbjct: 65 YRRLGGSFLIFRG-DPRQILPQVAKGLGAVAVHWHEDVEPYGRERDRAVAAALKEKGIAV 123
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEK--CLSMPFDPDAP--LLPPKRINSGDMSR 182
+ LL+ P + QGQP+ ++ FW L+ P AP L P I
Sbjct: 124 ETAWDQLLHPPEAIQTKQGQPYTVYSPFWRNWSSLAKPEPVSAPRHLEPLTEIEQATAGT 183
Query: 183 CPSDTL-VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
+ L +D S L+ +PG + A L TFI+ + +Y + R TS
Sbjct: 184 LGAICLPTAKDLGFHWSGDLIL---APGEAAAQAQLETFIDQHIQDYGEQRNYPAQPGTS 240
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP L FG + +R+V+ + + +E S+ + + + RE+ ++ + P
Sbjct: 241 LLSPALKFGVIGIRRVWTATQAAMAAARSE---EAQRSIRTWQQELAWREFYQHALYWFP 297
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ ERP F W+ +E +F AW +GRTGYP+VDA MR+L TGW+H+R R++V+SF
Sbjct: 298 HLAERPHREGFATFPWLNNEAHFAAWCEGRTGYPIVDAAMRQLNETGWMHNRCRMIVASF 357
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L + +WG +YF L+D DL ++ GWQ+ + + D + RI NP + KFDP
Sbjct: 358 LTKDLIINPQWGERYFMQKLIDGDLAANNGGWQWSASSGMDPKPL-RIFNPASQAQKFDP 416
Query: 422 NGEYVRRWLPELARLPT 438
EY+RRWLPE+ L T
Sbjct: 417 EAEYIRRWLPEVRSLDT 433
>gi|229514567|ref|ZP_04404028.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TMA 21]
gi|229348547|gb|EEO13505.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TMA 21]
Length = 469
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 146/463 (31%), Positives = 233/463 (50%), Gaps = 28/463 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFRRDLR DN AL A + +G V A++I PE+ ++ + + L+ L
Sbjct: 3 LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQE 62
Query: 67 LRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L +L L ++ D + ++ ++ K ATQ+ N Y+ RD A++ L+ QG
Sbjct: 63 LAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLSEQG 122
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I +F+ + P V QG+ F F F L++ F P P++ R + +
Sbjct: 123 IIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTL-FQP--PVIGKNRPVA--LWNV 177
Query: 184 PSDT--LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
PS LV+ E + + W+ + L F + +Y + R TS
Sbjct: 178 PSALAELVWHPEQTFDYPRVDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTS 237
Query: 242 FLSPHLHFGEVSVR----KVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
LSP+L G +S R +++H + ++S E ++L + RE+ +++
Sbjct: 238 SLSPYLAIGVLSARQCVARLYHESSMGELS----------EGAQVWLSELIWREFYQHLV 287
Query: 298 FNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
P S R + W D F+ W +G+TGYP+VDA MR+L TGW+H+R+R+
Sbjct: 288 AIEPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+V+SF K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP +G
Sbjct: 348 IVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQG 407
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAP--ESVLQAAGI 457
KFDPNG+++RRW+PEL + + +IH PW P SVL A +
Sbjct: 408 EKFDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVNSVLYPARL 450
>gi|229526306|ref|ZP_04415710.1| deoxyribodipyrimidine photolyase [Vibrio cholerae bv. albensis
VL426]
gi|229336464|gb|EEO01482.1| deoxyribodipyrimidine photolyase [Vibrio cholerae bv. albensis
VL426]
Length = 469
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 147/459 (32%), Positives = 231/459 (50%), Gaps = 20/459 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFRRDLR DN AL A + +G V A++I PE+ ++ + + L+ L
Sbjct: 3 LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQE 62
Query: 67 LRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L +L L ++ D + ++ ++ K ATQ+ N Y+ RD A++ L+ QG
Sbjct: 63 LAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQFLSEQG 122
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I +F+ + P V QG+ F F F L++ F P P++ R +
Sbjct: 123 ITWFAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTL-FQP--PVIGKNR--PAALWNV 177
Query: 184 PSDT--LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
PS LV+ E + + W+ + L F + +Y + R TS
Sbjct: 178 PSALAELVWHPEQTFDYPRVDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTS 237
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+L G +S R+ + R+ S E + E ++L + RE+ +++ P
Sbjct: 238 SLSPYLAIGVLSARQC--VARLYHESSMGELS----EGAQVWLSELIWREFYQHLVAIEP 291
Query: 302 -YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
S R + W D F+ W +G+TGYP+VDA MR+L TGW+H+R+R++V+S
Sbjct: 292 NLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVAS 351
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP +G KFD
Sbjct: 352 FLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFD 411
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAP--ESVLQAAGI 457
PNG+++RRW+PEL + + +IH PW P SVL A +
Sbjct: 412 PNGDFIRRWVPELRSVSSAYIHQPWTYPAINSVLYPARL 450
>gi|258622171|ref|ZP_05717197.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus VM573]
gi|424808742|ref|ZP_18234131.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus SX-4]
gi|258585495|gb|EEW10218.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus VM573]
gi|342323694|gb|EGU19477.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio mimicus SX-4]
Length = 469
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 151/476 (31%), Positives = 234/476 (49%), Gaps = 40/476 (8%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFRRDLR DN AL + +G V AV++ P++ ++ + ++ L+ L
Sbjct: 2 KLVWFRRDLRSFDNTALTVAIESGETVAAVYVATPQQWQQHHLAPIQADFIWRRLAALQQ 61
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L ++ L ++ D + +++ ++ KA A Q+ N Y+ RD R ++ L Q
Sbjct: 62 ELAAINVPLFYQQVADFREAANAVNQLAKALNANQVLANRDYELDEQQRDLRTEQLLAEQ 121
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
GI +F+ + P V QG+ F F F LS+ F P P++P + S
Sbjct: 122 GILWSAFDDKCILPPGSVRTKQGEFFKVFTPFKRAWLSL-FQP--PVIP------RNHSA 172
Query: 183 CPSDT------LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
P D LV+ + + + W + L F + +Y + R
Sbjct: 173 APWDVSNEFSHLVWHTDQIFDYTRVDSSQWPVEFEVIRTQLRDFCRERVQDYHQWRDFPA 232
Query: 237 SATTSFLSPHLHFGEVSVRK-VFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
TS LSP+L G +S R+ V L R +S +EG ++L + RE+ ++
Sbjct: 233 REGTSVLSPYLAIGALSARQCVARLYRESAMSALSEG-------AQVWLSELIWREFYQH 285
Query: 296 MSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
+ P S R L W D F+ W +G TGYP+VDA MR+L TGW+H+R+
Sbjct: 286 LVAIEPNISKSRDFLEWGARLEWWNDSEKFQRWCEGNTGYPIVDAAMRQLNQTGWMHNRL 345
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R++V+SF K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP
Sbjct: 346 RMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVS 405
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAP--ESVLQAAGIELGSNYPFPIV 468
+G KFDPNG+++RRW+PEL + + +IH PW P SVL YP P+V
Sbjct: 406 QGEKFDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVNSVL----------YPAPLV 451
>gi|126461586|ref|YP_001042700.1| deoxyribodipyrimidine photo-lyase [Rhodobacter sphaeroides ATCC
17029]
gi|126103250|gb|ABN75928.1| Deoxyribodipyrimidine photo-lyase type I [Rhodobacter sphaeroides
ATCC 17029]
Length = 471
Score = 215 bits (548), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 156/480 (32%), Positives = 235/480 (48%), Gaps = 37/480 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I+WFRRDLR+ DNP LA G +I +FI PE E G +W L + +
Sbjct: 8 ILWFRRDLRLADNPMLAEAAATGRPLIPLFILDPETEAL---GAAPKWRLGLGVEAFAQA 64
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L LG+ LV +R +++ L +V TGA + ++ L++P RD L GI
Sbjct: 65 LEGLGSRLVLRRGP-ALAVLKTLVAETGAAGVHWSRLWEPDWRARDEGVTAGLRQAGIEA 123
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMP----FDPDAPLLPP------KRIN 176
++EP +V QG + + FW+ P F P A L P +R+
Sbjct: 124 ARHAGHTIFEPREVETGQGGFYRVYTPFWKAVKDRPVAASFPPPARLPSPAEWPVSERLA 183
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
S D+ R +G+ A++A + G + A + L F++GPL Y+ R + D
Sbjct: 184 SWDLGRA----------MNRGA-AVVAPHLAVGEAAAAERLARFLSGPLDRYAAERDRPD 232
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
+ TS LS +L +GE+S R ++H + +AG E FL+ + RE+ ++
Sbjct: 233 APVTSRLSENLTYGEISARSLWHAGMRARAE-----GRAGAEK---FLQELAWREFGWHL 284
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
++ P R G F W D + WR+G TG P VDA MREL+ TG +H+R R+
Sbjct: 285 LYHTPEIARRNWRGDWDAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARL 344
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+ S+ K L WR G +F D L+D D S+ALGWQ+++G+ PD + RI NP +
Sbjct: 345 IAGSYLTKHLLTDWRVGKAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNPATQA 404
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFDP Y RR+L E+AR P E+V ++ G+ YP P+V + + R
Sbjct: 405 EKFDPESAYRRRFLAEIARRPGP---EALAFFEAVPRSWGLRPDRCYPRPVVGLAEGRER 461
>gi|422909456|ref|ZP_16944104.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-09]
gi|424658839|ref|ZP_18096090.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-16]
gi|341635145|gb|EGS59869.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-09]
gi|408053914|gb|EKG88912.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HE-16]
Length = 469
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 147/463 (31%), Positives = 231/463 (49%), Gaps = 28/463 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFRRDLR DN AL A + +G V A++I PE+ ++ + + L+ L
Sbjct: 3 LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQE 62
Query: 67 LRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L +L L ++ D + ++ ++ K ATQ+ N Y+ RD A++ LT QG
Sbjct: 63 LAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQTAQQLLTEQG 122
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
IA +F+ + P V QG+ F F F L++ F P P++ R S +
Sbjct: 123 IAWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTL-FQP--PVIGKNR--SAALWDV 177
Query: 184 PSDTL--VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
PS V+ E + + W+ + L F + +Y + R TS
Sbjct: 178 PSALAEWVWNPEQTFDYPRVDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGTS 237
Query: 242 FLSPHLHFGEVSVR----KVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
LSP+L G +S R +++H + ++S E ++L + RE+ +++
Sbjct: 238 SLSPYLAIGVLSARQCVARLYHESSMGELS----------EGAQVWLSELIWREFYQHLV 287
Query: 298 FNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
P S R + W D F+ W +G TGYP+VDA MR+L GW+H+R+R+
Sbjct: 288 AIEPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGNTGYPIVDAAMRQLNQIGWMHNRLRM 347
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+V+SF K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP +G
Sbjct: 348 IVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQG 407
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAP--ESVLQAAGI 457
KFDPNG+++RRW+PEL + + +IH PW P SVL A +
Sbjct: 408 EKFDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVNSVLYPARL 450
>gi|417139698|ref|ZP_11983120.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0259]
gi|417307171|ref|ZP_12094045.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli PCN033]
gi|338771226|gb|EGP25972.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli PCN033]
gi|386157426|gb|EIH13768.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0259]
Length = 472
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 159/499 (31%), Positives = 244/499 (48%), Gaps = 59/499 (11%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLS---- 61
+VWFR+DLR+ DN ALAA R + V+A++I P R W H++S
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATP------------RQWATHNMSPRQA 52
Query: 62 -HLDSSLRSLGTSLVTK------RSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLV 110
+++ L L +L K R D ++ +E++K A T LF+N+ Y+
Sbjct: 53 KLINAQLNGLRIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERA 112
Query: 111 RDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDP 165
RD + + L + + F+ ++ P V + + F F W K L MP
Sbjct: 113 RDVQVERTL--RNVLCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP--- 167
Query: 166 DAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPL 225
+ PK +SG + PS TL + +S ++ + A L F
Sbjct: 168 -ECVAAPKVRSSGSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGA 220
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
EY + R TS LS L G +S R+ H + +Q + G AG +++L
Sbjct: 221 GEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLN 274
Query: 286 SIGLREYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMREL 344
+ RE+ R++ +P RP + W + +FKAW++G+TGYP+VDA MR+L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHRPFIVWTDRVQWQRNPAHFKAWQEGKTGYPIVDAAMRQL 334
Query: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 404
+TGW+H+R+R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 405 AFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
+ RI NP +G KFD GE++RRWLPEL +P + +H PW +Q AG+ L +YP
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWK----WVQKAGVTL--DYP 448
Query: 465 FPIVRIDAAKCRLDEALSE 483
PIV A+ R A E
Sbjct: 449 QPIVDHKEARLRTLAAYEE 467
>gi|15600828|ref|NP_232458.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121585968|ref|ZP_01675761.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae 2740-80]
gi|153820061|ref|ZP_01972728.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae NCTC 8457]
gi|227811685|ref|YP_002811695.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
gi|229506767|ref|ZP_04396276.1| deoxyribodipyrimidine photolyase [Vibrio cholerae BX 330286]
gi|229510438|ref|ZP_04399918.1| deoxyribodipyrimidine photolyase [Vibrio cholerae B33]
gi|229517431|ref|ZP_04406876.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC9]
gi|229605241|ref|YP_002875945.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MJ-1236]
gi|254850324|ref|ZP_05239674.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae MO10]
gi|255746116|ref|ZP_05420063.1| deoxyribodipyrimidine photolyase [Vibrio cholera CIRS 101]
gi|262158603|ref|ZP_06029717.1| deoxyribodipyrimidine photolyase [Vibrio cholerae INDRE 91/1]
gi|298499922|ref|ZP_07009728.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MAK 757]
gi|360038062|ref|YP_004939824.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae O1 str.
2010EL-1786]
gi|379743509|ref|YP_005334561.1| deoxyribodipyrimidine photolyase [Vibrio cholerae IEC224]
gi|417812104|ref|ZP_12458765.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-49A2]
gi|417816596|ref|ZP_12463226.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HCUF01]
gi|418329963|ref|ZP_12940997.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-06A1]
gi|418337496|ref|ZP_12946391.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-23A1]
gi|418339492|ref|ZP_12948380.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-28A1]
gi|418349168|ref|ZP_12953900.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-43A1]
gi|418353785|ref|ZP_12956510.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-61A1]
gi|419824099|ref|ZP_14347628.1| DNA photolyase family protein [Vibrio cholerae CP1033(6)]
gi|421316788|ref|ZP_15767358.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1032(5)]
gi|421319836|ref|ZP_15770394.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1038(11)]
gi|421323878|ref|ZP_15774405.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1041(14)]
gi|421326850|ref|ZP_15777368.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1042(15)]
gi|421331937|ref|ZP_15782416.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1046(19)]
gi|421335570|ref|ZP_15786033.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1048(21)]
gi|421341106|ref|ZP_15791536.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-20A2]
gi|421346109|ref|ZP_15796493.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-46A1]
gi|422885232|ref|ZP_16931672.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-40A1]
gi|422897943|ref|ZP_16935363.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-48A1]
gi|422904100|ref|ZP_16939052.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-70A1]
gi|422915375|ref|ZP_16949824.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HFU-02]
gi|422926998|ref|ZP_16960003.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-38A1]
gi|423146338|ref|ZP_17133906.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-19A1]
gi|423148099|ref|ZP_17135477.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-21A1]
gi|423151885|ref|ZP_17139116.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-22A1]
gi|423158508|ref|ZP_17145521.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-32A1]
gi|423162314|ref|ZP_17149186.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-33A2]
gi|423162508|ref|ZP_17149374.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-48B2]
gi|423732330|ref|ZP_17705627.1| DNA photolyase family protein [Vibrio cholerae HC-17A1]
gi|423736965|ref|ZP_17710078.1| DNA photolyase family protein [Vibrio cholerae HC-50A2]
gi|423900591|ref|ZP_17727949.1| DNA photolyase family protein [Vibrio cholerae HC-62A1]
gi|423912133|ref|ZP_17728649.1| DNA photolyase family protein [Vibrio cholerae HC-77A1]
gi|423999959|ref|ZP_17743116.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-17A2]
gi|424004591|ref|ZP_17747596.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-37A1]
gi|424021751|ref|ZP_17761460.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-62B1]
gi|424028401|ref|ZP_17767998.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-69A1]
gi|424587687|ref|ZP_18027259.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1030(3)]
gi|424592498|ref|ZP_18031913.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1040(13)]
gi|424596361|ref|ZP_18035668.1| deoxyribodipyrimidine photo-lyase [Vibrio Cholerae CP1044(17)]
gi|424603214|ref|ZP_18042348.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1047(20)]
gi|424605046|ref|ZP_18044033.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1050(23)]
gi|424607951|ref|ZP_18046885.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-39A1]
gi|424614591|ref|ZP_18053371.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-41A1]
gi|424617076|ref|ZP_18055761.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-42A1]
gi|424620972|ref|ZP_18059501.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-47A1]
gi|424643041|ref|ZP_18080819.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-56A2]
gi|424650106|ref|ZP_18087709.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-57A2]
gi|424654938|ref|ZP_18092256.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-81A2]
gi|440711204|ref|ZP_20891845.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 4260B]
gi|443505134|ref|ZP_21072075.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-64A1]
gi|443509033|ref|ZP_21075783.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-65A1]
gi|443512877|ref|ZP_21079500.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-67A1]
gi|443516423|ref|ZP_21082923.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-68A1]
gi|443521124|ref|ZP_21087454.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-71A1]
gi|443521284|ref|ZP_21087606.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-72A2]
gi|443530056|ref|ZP_21096073.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-7A1]
gi|443532706|ref|ZP_21098709.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-80A1]
gi|443537421|ref|ZP_21103279.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-81A1]
gi|449057517|ref|ZP_21735813.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae O1 str. Inaba
G4222]
gi|81858027|sp|Q9KNA8.1|PHR_VIBCH RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|9657440|gb|AAF95971.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121549904|gb|EAX59924.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae 2740-80]
gi|126509396|gb|EAZ71990.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae NCTC 8457]
gi|227010827|gb|ACP07038.1| deoxyribodipyrimidine photolyase [Vibrio cholerae M66-2]
gi|229345467|gb|EEO10440.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC9]
gi|229352883|gb|EEO17823.1| deoxyribodipyrimidine photolyase [Vibrio cholerae B33]
gi|229357118|gb|EEO22036.1| deoxyribodipyrimidine photolyase [Vibrio cholerae BX 330286]
gi|229371727|gb|ACQ62149.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MJ-1236]
gi|254846029|gb|EET24443.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae MO10]
gi|255735870|gb|EET91268.1| deoxyribodipyrimidine photolyase [Vibrio cholera CIRS 101]
gi|262029483|gb|EEY48133.1| deoxyribodipyrimidine photolyase [Vibrio cholerae INDRE 91/1]
gi|297541903|gb|EFH77954.1| deoxyribodipyrimidine photolyase [Vibrio cholerae MAK 757]
gi|340039746|gb|EGR00719.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HCUF01]
gi|340044924|gb|EGR05872.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-49A2]
gi|341630144|gb|EGS55247.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-70A1]
gi|341631059|gb|EGS56000.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-40A1]
gi|341631141|gb|EGS56081.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-48A1]
gi|341631864|gb|EGS56740.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HFU-02]
gi|341645075|gb|EGS69231.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-38A1]
gi|356421241|gb|EHH74744.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-19A1]
gi|356424231|gb|EHH77646.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-21A1]
gi|356426470|gb|EHH79778.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-06A1]
gi|356430880|gb|EHH84085.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-23A1]
gi|356434968|gb|EHH88128.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-32A1]
gi|356436434|gb|EHH89548.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-22A1]
gi|356440411|gb|EHH93352.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-33A2]
gi|356442892|gb|EHH95725.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-28A1]
gi|356446030|gb|EHH98830.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-43A1]
gi|356454850|gb|EHI07497.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-61A1]
gi|356457717|gb|EHI10224.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-48B2]
gi|356649216|gb|AET29270.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae O1 str.
2010EL-1786]
gi|378796103|gb|AFC59573.1| deoxyribodipyrimidine photolyase [Vibrio cholerae IEC224]
gi|395919246|gb|EJH30069.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1032(5)]
gi|395921892|gb|EJH32711.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1041(14)]
gi|395924724|gb|EJH35526.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1038(11)]
gi|395930735|gb|EJH41481.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1046(19)]
gi|395933775|gb|EJH44514.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1042(15)]
gi|395935252|gb|EJH45987.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1048(21)]
gi|395938590|gb|EJH49282.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-20A2]
gi|395947636|gb|EJH58291.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-46A1]
gi|395964476|gb|EJH74693.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-42A1]
gi|395966295|gb|EJH76422.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-56A2]
gi|395969260|gb|EJH79147.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-57A2]
gi|395971527|gb|EJH81187.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1030(3)]
gi|395973176|gb|EJH82746.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1047(20)]
gi|395975239|gb|EJH84735.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-47A1]
gi|408009783|gb|EKG47676.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-41A1]
gi|408015828|gb|EKG53399.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-39A1]
gi|408043105|gb|EKG79126.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1040(13)]
gi|408048055|gb|EKG83526.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1050(23)]
gi|408049864|gb|EKG85052.1| deoxyribodipyrimidine photo-lyase [Vibrio Cholerae CP1044(17)]
gi|408058760|gb|EKG93545.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-81A2]
gi|408613762|gb|EKK87048.1| DNA photolyase family protein [Vibrio cholerae CP1033(6)]
gi|408620829|gb|EKK93833.1| DNA photolyase family protein [Vibrio cholerae HC-17A1]
gi|408652134|gb|EKL23366.1| DNA photolyase family protein [Vibrio cholerae HC-50A2]
gi|408653028|gb|EKL24205.1| DNA photolyase family protein [Vibrio cholerae HC-62A1]
gi|408664204|gb|EKL35043.1| DNA photolyase family protein [Vibrio cholerae HC-77A1]
gi|408850645|gb|EKL90594.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-37A1]
gi|408854708|gb|EKL94456.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-17A2]
gi|408877826|gb|EKM16851.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-69A1]
gi|408880773|gb|EKM19691.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-62B1]
gi|439972691|gb|ELP48934.1| deoxyribodipyrimidine photolyase [Vibrio cholerae 4260B]
gi|443430432|gb|ELS73001.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-64A1]
gi|443434270|gb|ELS80427.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-65A1]
gi|443438064|gb|ELS87794.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-67A1]
gi|443442174|gb|ELS95487.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-68A1]
gi|443445153|gb|ELT01875.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-71A1]
gi|443452607|gb|ELT12789.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-72A2]
gi|443459626|gb|ELT27020.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-7A1]
gi|443464052|gb|ELT35000.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-80A1]
gi|443467430|gb|ELT42086.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae HC-81A1]
gi|448263228|gb|EMB00475.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae O1 str. Inaba
G4222]
Length = 469
Score = 215 bits (547), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 143/448 (31%), Positives = 227/448 (50%), Gaps = 18/448 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFRRDLR DN AL A + +G V A++I PE+ ++ + + L+ L
Sbjct: 3 LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQE 62
Query: 67 LRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L +L L ++ D + ++ ++ K ATQ+ N Y+ RD A++ L+ QG
Sbjct: 63 LAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQLLSEQG 122
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I +F+ + P V QG+ F F F L++ F P P++ R + +
Sbjct: 123 IIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTL-FQP--PVIGKNRPVA--LWNV 177
Query: 184 PSDT--LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
PS LV+ E + + W+ + L F + +Y + R TS
Sbjct: 178 PSALAELVWHPEQAFDYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGTS 237
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+L G +S R+ + R+ S E + E ++L + RE+ +++ P
Sbjct: 238 SLSPYLAIGVLSARQC--VARLYHESSMGELS----EGAQVWLSELIWREFYQHLVAIEP 291
Query: 302 -YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
S R + W D F+ W +G+TGYP+VDA MR+L TGW+H+R+R++V+S
Sbjct: 292 NLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVAS 351
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP +G KFD
Sbjct: 352 FLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFD 411
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAP 448
PNG+++RRW+PEL + + +IH PW P
Sbjct: 412 PNGDFIRRWVPELRSVSSAYIHQPWTYP 439
>gi|340785990|ref|YP_004751455.1| deoxyribodipyrimidine photolyase [Collimonas fungivorans Ter331]
gi|340551257|gb|AEK60632.1| Deoxyribodipyrimidine photolyase [Collimonas fungivorans Ter331]
Length = 510
Score = 215 bits (547), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 157/493 (31%), Positives = 250/493 (50%), Gaps = 44/493 (8%)
Query: 7 SIVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPEEEGPYYPG------RVSRWWLKHS 59
S+VWFRRDLR+ D+ AL ++ + AV VF++ + P RV +++ S
Sbjct: 21 SLVWFRRDLRMSDHAALHHALKNSAAVFCVFVFDTDILQPLLDAGLGADRRVE--FIRGS 78
Query: 60 LSHLDSSLRSLGTSLVTKR--STDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKE 117
++ LD LR LG L+ + + D + +L + G +F NH Y+P + RD
Sbjct: 79 VTELDLELRKLGGGLLVRHGPAHDVIPAL---ARQLGVNAVFSNHDYEPQARQRDAGVAR 135
Query: 118 ALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLS----------MPFD 164
L A G A S+ +++E +V GQPF+ F + W K L+ P +
Sbjct: 136 TLAADGRAWHSYKDQVIFECEEVLTMAGQPFSVFTPYKNAWMKRLAAADGSFFLKPYPIE 195
Query: 165 PDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGP 224
A L P S + PS + K +N L +PG S A L F+
Sbjct: 196 KYAARLAPP--PSSPPEKIPSLAAL----GFKKTN-LRELKIAPGMSGACGLLEDFMPR- 247
Query: 225 LIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFL 284
L +Y ++R S+LS HL FG +S+R + ++++ A ++L
Sbjct: 248 LGQYGQSRDFPAVKGPSYLSIHLRFGTISIRT------LARLAYQALHQGAAAGGAAIWL 301
Query: 285 KSIGLREYSRYMSFNHPY---SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGM 341
+ R++ + +HP+ + +P +++ S F AW GRTGYPLVDA M
Sbjct: 302 SELIWRDFYFMILHHHPHVAGAAFKPEYDAIRWESGERAHSLFLAWCDGRTGYPLVDAAM 361
Query: 342 RELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIP 401
+L +G++H+R+R+V +SF +K L + WRWG +YF + L D DL ++ GWQ+ + +
Sbjct: 362 LQLNQSGYMHNRLRMVTASFLIKDLGIDWRWGERYFAERLNDFDLAANNGGWQWAASSGC 421
Query: 402 DGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGS 461
D + + RI NP + KFD +G+++RR+LP+L+ L IH PW AP L+ AGI LG
Sbjct: 422 DAQPYFRIFNPITQSEKFDADGKFIRRYLPQLSALGDRHIHAPWLAPAQELERAGIRLGQ 481
Query: 462 NYPFPIVRIDAAK 474
+YP P+V+ D A+
Sbjct: 482 DYPLPLVQHDEAR 494
>gi|401676526|ref|ZP_10808510.1| deoxyribodipyrimidine photolyase [Enterobacter sp. SST3]
gi|400216210|gb|EJO47112.1| deoxyribodipyrimidine photolyase [Enterobacter sp. SST3]
Length = 470
Score = 215 bits (547), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 150/467 (32%), Positives = 226/467 (48%), Gaps = 26/467 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRA--GAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR DLRV DN ALAA R+ +V+A+FI PE+ + +LK L+ L
Sbjct: 5 LVWFRADLRVHDNFALAAACRSDDASVLALFIATPEQWQQHDMAPRQAAYLKSHLNDLQH 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
SL G L+ K +D + L EV + G T LF+N+ Y+ +RD + + L
Sbjct: 65 SLAEKGIPLIYKEVSDFAAQLKMLREVCQQNGVTHLFYNYQYELNERLRDRQLENILGE- 123
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
+ F+ ++ P V + + F F + + +P ++
Sbjct: 124 -VVCEGFDDSVMLAPGSVMTGGHEMYKVFTPFKNAFVKRLKEALPECVPAPAARGEAITT 182
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
P T + ++ + LL A A L F EY R TS
Sbjct: 183 LPELTFNY---PQQAFDELLFPA---NEKAAIAKLRQFCKQGAGEYDARRDFPAIEGTSR 236
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP- 301
LS L G +S R+ H + +Q + G AG +++L + RE+ R++ HP
Sbjct: 237 LSASLALGVLSPRQCLHRLLAEQPQAMDGG--AG----SVWLNELIWREFYRHLMTYHPD 290
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
RP + W DE +AW++G TGYP+VDA MR+L TGW+H+R+R++ +SF
Sbjct: 291 LCKHRPFIPWTDNVKWQHDEARLQAWQKGETGYPIVDAAMRQLNETGWMHNRLRMITASF 350
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +G KFD
Sbjct: 351 LVKDLLIDWRIGERYFISQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQKFDA 410
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
NG+++RRWLP L +P + IH PW + G++L +YP PIV
Sbjct: 411 NGDFIRRWLPALRNVPAKAIHDPWTWADK----QGVKL--DYPRPIV 451
>gi|452825173|gb|EME32171.1| deoxyribodipyrimidine photo-lyase / cryptochrome [Galdieria
sulphuraria]
Length = 865
Score = 215 bits (547), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 146/494 (29%), Positives = 241/494 (48%), Gaps = 26/494 (5%)
Query: 7 SIVWFR-RDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
SIVWFR DLRVEDN AL+A V G ++ +FIW E G +WWL SL L
Sbjct: 19 SIVWFRGHDLRVEDNHALSAAVERGCGILPLFIWDEELLRDAGYGNWWKWWLFTSLRCLH 78
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ LG LV + +L+ +V+ GA +F+N +DP S+ D + E + +
Sbjct: 79 KQILKLGNRLVFLEG-NIQDTLVSLVQKVGADAIFWNRDFDPSSMSLDRKVIEKMKMLQL 137
Query: 125 AVRSFNADLLYEPWDVNDAQG-----QPFATFAAFWEKCLSM-PFDPDAPLLPPKRINSG 178
+ + W+ D Q + F+ F W L + P D +L P +
Sbjct: 138 KISIHEGNAWSRQWERIDNQQTKCLPETFSGFMKLWVSSLRLKPIDKPKTILKPIIPHMN 197
Query: 179 DMSRCPSDTLVFEDESEKG---SNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
M + D+SE+ S A WSPG A AL +I YS+N +
Sbjct: 198 GMK------IFHLDDSERENEISTTTEAAKWSPGCVAAKYALKKLQIHHIINYSENYFRK 251
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
D S SP++ FGE++ +V+H + S N N + E FL+++ LR++ RY
Sbjct: 252 DMPIWSQFSPYVRFGEITSHQVYHELNEISESTLNINNSSLREYP--FLRNLCLRDFFRY 309
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+ +HP + + F D+ + ++ QG+TGYP++DA +R L GW+H +R
Sbjct: 310 LFIHHPELSRSSFMEYFSRFPSKFDKYLYDSFVQGQTGYPIIDAAVRALRFRGWIHTCLR 369
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDG--RAFDRIDNPQ 413
++ FFV L LP +F+ + +DA+ ++ + +I T+ + + I
Sbjct: 370 SLLVKFFVFSLMLPSEILSHWFYSSFIDAEFYTNTV---FIENTLESSVRSSLNNITYHS 426
Query: 414 FEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAA 473
+ DP G++++RW+ EL+++ + +IH PW A + L A ++LG +YP+PI+ A
Sbjct: 427 AASRRIDPLGKFIKRWVSELSKMDSRYIHSPWKASKDYLNACSVKLGISYPYPIIYPRLA 486
Query: 474 KCRLDEALSEMWQQ 487
+ R +A+ E +Q+
Sbjct: 487 RKRARDAI-EFFQE 499
>gi|126735833|ref|ZP_01751578.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. CCS2]
gi|126715020|gb|EBA11886.1| deoxyribodipyrimidine photolyase, putative [Roseobacter sp. CCS2]
Length = 472
Score = 215 bits (547), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 155/479 (32%), Positives = 238/479 (49%), Gaps = 25/479 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
++WFRRDLR+ D+ AL A A VI VFI+ E G + L S++ L +S
Sbjct: 7 LMWFRRDLRLGDHEALTAACDADRPVIPVFIYDELTESM---GAAPKMRLGLSVADLAAS 63
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L G+ L+ +R ++ L E++K TGA ++++ LYDP RD K AL GI
Sbjct: 64 LNEKGSKLILRRGK-ALDVLRELIKDTGADTVYWSRLYDPDGKTRDTDVKAALKDDGITA 122
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
SF +L+EPW V G + + W+ D A L P I D S SD
Sbjct: 123 ESFKGHVLFEPWTVETKIGGFYKVYTPMWKSVRGN--DVPAALPTPGTIPVPD-SWPKSD 179
Query: 187 TLV---FEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
+ + +G++ L + + G + A L FI + Y KNR TS L
Sbjct: 180 DIADWQMDAAMHRGADTLKSHC-TVGEAAASHRLGAFIANHVANYVKNRDLPAVDGTSGL 238
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
S +L +GE+S RK +H W + GD FLK + RE++ +++++ P
Sbjct: 239 SENLTYGEISPRKCWH------SGWQALNDGKGDAET--FLKELVWREFAYHLAYHTPRI 290
Query: 304 HERPLLGHLKFFSWVVDE--GYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
F W DE KAW+QGRTG VDA MRE++ TG +H+R R++V+S+
Sbjct: 291 TTDNWKEDWDAFPWNTDERLAEVKAWKQGRTGIRFVDAAMREMYVTGTMHNRGRMIVASY 350
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L W+ GM +F D L+D D S+A+GWQ+ +G+ PD + R+ NP + KFD
Sbjct: 351 LTKHLLCHWKIGMNWFADCLIDWDPCSNAMGWQWSAGSGPDATPYFRVFNPVTQLDKFDK 410
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
+ Y+++W+ E + P+ + + + ++ G+ +YP PIV D + R +A
Sbjct: 411 DRAYIKKWIAEGTKRPSA---TALSYYDMIPESWGMTAQDSYPDPIVPADVGRSRALDA 466
>gi|291443506|ref|ZP_06582896.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL
15998]
gi|291346453|gb|EFE73357.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL
15998]
Length = 456
Score = 215 bits (547), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 155/483 (32%), Positives = 238/483 (49%), Gaps = 42/483 (8%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVR-AGAVIAVFIW--APEEEGPYYPGRVSRWWLKHSLSH 62
++V F DLR+ D+P L A +R A V+ +F+ A G P R++ +L L+
Sbjct: 4 VAVVLFTSDLRLHDHPVLRAALRDADEVVPLFVRDDAVHRAGFDAPNRLA--FLADCLAD 61
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
LD+ LR G L+ +R + + VV+ TGA + + R+ R +EAL
Sbjct: 62 LDTGLRDRGGRLIVRRGG-TAREVKRVVEQTGADSVHIAAGVSGYAAQREERIREALAGT 120
Query: 123 GIAVRSFNADLL-YEPWDVNDAQGQP-FATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
G +R +A + P V G+ FA F ++ + + L P+ + D
Sbjct: 121 GCELRVHDAVVTALAPGRVVPTGGKDHFAVFTPYFRRWEAEGVR--GTLAAPRTVRVPDG 178
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
D L D + KG + LAR G K +T++++GP+ Y T
Sbjct: 179 --VSGDALPDRD-AVKGVSPGLARG---GEEAGRKLVTSWLHGPMAAYEDGHDDLAGDAT 232
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSPHLHFG VS ++ AN + G F++ + R++ +
Sbjct: 233 SRLSPHLHFGTVSAAEL-----------ANRAREKGGPGGEAFVRQLAWRDFHHQVLAAR 281
Query: 301 P---YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
P +S RP + W DE +AW+ GRTGYPLVDA MR+L GW+H+R R++
Sbjct: 282 PDASWSDYRP-----RHDRWRSDEDEIEAWKSGRTGYPLVDAAMRQLAHEGWMHNRGRML 336
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
+SF K L + WR G ++F D L+D D+ ++ L WQ+++GT D R +R+ NP +G
Sbjct: 337 TASFLTKTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPVIQGK 395
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
+FDP+G YVRRW+PELA + +H PW L AG+ +YP P+V + A+ R
Sbjct: 396 RFDPDGAYVRRWVPELAEVEGPAVHEPWKL--EGLDRAGV----DYPDPVVDLAEARSRF 449
Query: 478 DEA 480
+ A
Sbjct: 450 ERA 452
>gi|425287290|ref|ZP_18678214.1| deoxyribodipyrimidine photolyase [Escherichia coli 3006]
gi|432530039|ref|ZP_19767080.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE233]
gi|408218054|gb|EKI42287.1| deoxyribodipyrimidine photolyase [Escherichia coli 3006]
gi|431056782|gb|ELD66275.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE233]
Length = 472
Score = 215 bits (547), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 157/488 (32%), Positives = 240/488 (49%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPSPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLNELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
HP RP + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 ITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++R+WLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 406 GEKFDLEGEFIRQWLPELRNVPGKSVHEPWKWA----QKAGVML--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|229522729|ref|ZP_04412145.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TM 11079-80]
gi|229340714|gb|EEO05720.1| deoxyribodipyrimidine photolyase [Vibrio cholerae TM 11079-80]
Length = 469
Score = 215 bits (547), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 149/464 (32%), Positives = 231/464 (49%), Gaps = 30/464 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFRRDLR DN AL A + +G V A++I PE+ ++ + + L+ L
Sbjct: 3 LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLMWRRLAELQQE 62
Query: 67 LRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L +L L ++ D + ++ ++ K ATQ+ N Y+ RD A++ L+ QG
Sbjct: 63 LAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLSEQG 122
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I +F+ + P V QG+ F F F L++ F P P++ R +
Sbjct: 123 ITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTL-FQP--PVIGKNR--PAALWGV 177
Query: 184 PSDT--LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
PS LV+ E + + W+ + L F + +Y + R TS
Sbjct: 178 PSALAELVWHPEQAFDYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGTS 237
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+L G +S R+ + R+ S E + E ++L + RE+ + H
Sbjct: 238 SLSPYLAIGVLSARQC--VARLYHESSMGEPS----EGAQVWLSELIWREF-----YQHL 286
Query: 302 YSHERPLLGHLKFFSWVV------DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+ E L L F W D F+ W +G+TGYP+VDA MR+L TGW+H+R+R
Sbjct: 287 VAIEPNLSKSLDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLR 346
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++V+SF K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP +
Sbjct: 347 MIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQ 406
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAP--ESVLQAAGI 457
G KFDPNG+++RRW+PEL + + +IH PW P SVL A +
Sbjct: 407 GEKFDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVNSVLYPARL 450
>gi|94311677|ref|YP_584887.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Cupriavidus
metallidurans CH34]
gi|93355529|gb|ABF09618.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Cupriavidus
metallidurans CH34]
Length = 513
Score = 215 bits (547), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 154/487 (31%), Positives = 234/487 (48%), Gaps = 34/487 (6%)
Query: 7 SIVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPEEEGPY-----YPGRVSRWWLKHSL 60
+VW RRDLR +DN AL ++ V VF++ E P + R + L+ SL
Sbjct: 27 GLVWLRRDLRTDDNAALHYALKHCRQVWCVFVFDREILAPLLARGLHADRRVEFILR-SL 85
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
L +L G L+ T + ++ + +F NH Y+P + RD + L
Sbjct: 86 EPLRRALEDSGGGLIVLDGT-ARQAIPRLAAELEVEAVFANHDYEPAANDRDEAVRRTLA 144
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSMPFDPDAPLLPPKRINS 177
A + +F +++E ++ QG+PF+ F + W + + PFD L P I
Sbjct: 145 ADSRVLLTFKDQVIFERDEILTGQGRPFSVFTPYKNAWLRTVR-PFD-----LRPYPIEK 198
Query: 178 GDMSRCP------SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKN 231
+ P D +N LA P S+ AL + +Y +
Sbjct: 199 HQETLAPVPQRYRGQLPTLADLGFTATN--LAGIAMPTGSDGAHALFDEFLSRIGDYGRR 256
Query: 232 RRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLRE 291
R S+LS HL FG +S+R L R + G A E ++L + R+
Sbjct: 257 RDFPAVRGPSYLSVHLRFGTISIRT---LARAAHDTMLRGG--AASEGATVWLSELIWRD 311
Query: 292 YSRYMSFNHPYSHE-RPLLGHLKFFSWV---VDEGYFKAWRQGRTGYPLVDAGMRELWAT 347
+ + +HP E + W+ + YF AW RTGYPL+DA M ++ +
Sbjct: 312 FYFMILHHHPRVAEGKSFHAEYDGLRWIAPATGDRYFAAWCDARTGYPLIDAAMLQIRQS 371
Query: 348 GWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFD 407
G++H+R+R+V +SF VK L + WR G +YF D L D DL ++ GWQ+ + T D + +
Sbjct: 372 GYMHNRLRMVTASFLVKDLGVDWRRGEQYFADQLNDFDLAANNGGWQWAASTGCDAQPYF 431
Query: 408 RIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPI 467
RI NP + KFDP G+++RR+LP LA LP +IH PW AP VL+AAG+ LG +YP PI
Sbjct: 432 RIFNPVTQSEKFDPQGQFIRRYLPMLAALPDRYIHAPWTAPNEVLRAAGVTLGKDYPRPI 491
Query: 468 VRIDAAK 474
V+ D A+
Sbjct: 492 VQHDVAR 498
>gi|238790472|ref|ZP_04634241.1| Deoxyribodipyrimidine photo-lyase [Yersinia frederiksenii ATCC
33641]
gi|238721416|gb|EEQ13087.1| Deoxyribodipyrimidine photo-lyase [Yersinia frederiksenii ATCC
33641]
Length = 481
Score = 215 bits (547), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 148/473 (31%), Positives = 224/473 (47%), Gaps = 20/473 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR DLR+ DN AL A + VIAVF+ P + + +L +L L +
Sbjct: 5 LVWFRNDLRLTDNLALHAACQDPQATVIAVFVATPTQWATHDMAPRQAAFLLQNLQQLQT 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L + L + D S+ L + + LF+N Y+ +RD+ L +
Sbjct: 65 ALAARAIPLHYHQCDDFQGSIDWLDDFCQQHQVNVLFYNQQYELNEQLRDNALVARLNGR 124
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
IA SF+ +L P V + + F F + D +P + S M
Sbjct: 125 DIACNSFHDSVLLPPGSVLTGNNEMYKVFTPFRRAFIQRLIMSDCGSVPAPKARSASMEI 184
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
P F+ + N L G A + L TF + +Y + R A TS
Sbjct: 185 VPQPLTPFDYPQQPLDNVLF----PAGEEAALQRLRTFCREQVQDYQQQRDFPAIAATSC 240
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP- 301
LSP+L G +S R+ + +R + E + D ++L + RE+ R++ +P
Sbjct: 241 LSPYLALGILSPRQCVNRLRAE----CPEVLENADGGAFIWLNELIWREFYRHLLVAYPR 296
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
RP +G W + AW+QG+TGYP+VDA MR+L TGW+H+R+R++ +SF
Sbjct: 297 LCQHRPFIGWTDAVVWNHSQQQLIAWQQGQTGYPIVDAAMRQLNETGWMHNRLRMISASF 356
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L + WR G +YF LLD DL ++ GWQ+ + T D + RI NP +G +FD
Sbjct: 357 LVKDLLIDWRQGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDK 416
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
+G ++RRWLPELA +P IH PWN + Q +YP P+V AA+
Sbjct: 417 DGVFIRRWLPELAMVPDSDIHQPWNWAQRQQQPL------DYPLPLVDHKAAR 463
>gi|254224596|ref|ZP_04918212.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae V51]
gi|125622659|gb|EAZ50977.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae V51]
Length = 469
Score = 214 bits (546), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 145/463 (31%), Positives = 231/463 (49%), Gaps = 28/463 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFRRDLR DN AL + +G V A++I PE+ ++ + + L+ L
Sbjct: 3 LVWFRRDLRSFDNTALTTALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQE 62
Query: 67 LRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L +L L ++ D + ++ ++ K ATQ+ N Y+ RD A++ L+ QG
Sbjct: 63 LAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQSAQQLLSEQG 122
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I +F+ + P V QG+ F F F L++ F P P++ R +
Sbjct: 123 ITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTL-FQP--PVIGKNR--PAALWDV 177
Query: 184 PSDT--LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
PS LV+ E + + W+ + L F + +Y + R TS
Sbjct: 178 PSALAELVWHPEQTFDYPRVDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAQEGTS 237
Query: 242 FLSPHLHFGEVSVR----KVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
LSP+L G +S R +++H + ++S E ++L + RE+ +++
Sbjct: 238 SLSPYLAIGVLSARQCVARLYHESSMGELS----------EGAQVWLSELIWREFYQHLV 287
Query: 298 FNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
P S R + W D F+ W +G+TGYP+VDA MR+L TGW+H+R+R+
Sbjct: 288 AIEPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+V+SF K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP +G
Sbjct: 348 IVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQG 407
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAP--ESVLQAAGI 457
KFDPNG+++RRW+PEL + + +IH PW P SVL A +
Sbjct: 408 EKFDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVNSVLYPARL 450
>gi|404412670|ref|YP_006698257.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC7179]
gi|404238369|emb|CBY59770.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC7179]
Length = 467
Score = 214 bits (546), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 140/464 (30%), Positives = 227/464 (48%), Gaps = 23/464 (4%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S++WFRRDLRV DN AL + ++ +F P + + G S S++H
Sbjct: 2 TSVMWFRRDLRVSDNKALYHACKEDDLLLLFQVNPAQ---FITGSPSHQAFFASVAHFKQ 58
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA-TQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ T+L+ + V L ++ + + +++FN RD AK Q I
Sbjct: 59 EVDK--TALLQIMFGEPVGCLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFFDEQEI 116
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V++F+ L+ +V + + + F +++K + + P K D R
Sbjct: 117 EVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKK-----WREEIKETPFKVTLKADNIR-- 169
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
+ L + E + G A+ L FI + +Y K R + TS LS
Sbjct: 170 KENLFPKYEEQFAEMTCDLPILDSGEKTANTRLANFIKHDVADYDKARDFPELDKTSHLS 229
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
+L GE+SVR ++ + Q + A EG +F K + R++ + + P
Sbjct: 230 RYLRTGEISVRTIWQAL---QENEATEGRA-------IFEKELCWRDFYNMIYVSFPNQK 279
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
P+ + +F W + +FKAW+ G+TG+PLVDA MR+L TGW+H+R+R+V +SF K
Sbjct: 280 NEPIQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTK 339
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L + WR+G KYF L+D D S+ GWQ+ + T D + RI NP + KFDP G+
Sbjct: 340 DLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGK 399
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
++R+++ ELA LP ++IH P E + G+ LG NYPFP++
Sbjct: 400 FIRKYVKELANLPDKYIHQPEKMSEIEQKEYGLLLGKNYPFPLI 443
>gi|422408691|ref|ZP_16485652.1| deoxyribodipyrimidine photo-lyase, partial [Listeria monocytogenes
FSL F2-208]
gi|313610351|gb|EFR85579.1| deoxyribodipyrimidine photo-lyase [Listeria monocytogenes FSL
F2-208]
Length = 467
Score = 214 bits (546), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 137/465 (29%), Positives = 225/465 (48%), Gaps = 25/465 (5%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S++WFRRDLRV DN AL + ++ +F P + G S S++H
Sbjct: 2 TSVMWFRRDLRVNDNKALYNACKEDDLLLLFQVNP---AQFITGSPSHQAFFTSVAHFKQ 58
Query: 66 SL-RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ ++ ++ + L + + + +++FN RD A+ Q I
Sbjct: 59 EIDKTAHLQIMFGEPIECFQQLKDTLPSWD--KVYFNRDETGYGAERDEAAQAFFDEQKI 116
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS-MPFDPDAPLLPPKRINSGDMSRC 183
V+SF+ L+ +V + + + F +++K + P L P+ I
Sbjct: 117 EVQSFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKPENIRK------ 170
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
++L + E + G A+ L FI + +Y K R + TS L
Sbjct: 171 --ESLFPKYEEQFAEMTCDLPILDSGERAANTRLANFIKHDIADYDKARDFPELDKTSHL 228
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
S +L GE+S+R ++ + Q + A EG F K + R++ + + P
Sbjct: 229 SRYLRTGEISIRTIWQAL---QETEATEGRAT-------FEKELCWRDFYNMIYVSFPNQ 278
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
P+ + +F W + +FKAW++G TG+PLVDA MR+L TGW+H+R+R++ +SF
Sbjct: 279 KNEPIQENYRFIEWENNREFFKAWQEGETGFPLVDAAMRQLKETGWMHNRLRMITASFLT 338
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WR+G KYF L+D D S+ GWQ+ + T D + RI NP + KFDP G
Sbjct: 339 KDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTG 398
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
E++R+++ ELA LP ++IH P E+ + G+ LG +YPFPIV
Sbjct: 399 EFIRKYVKELANLPDKYIHQPEKMTETEQKEHGLLLGKDYPFPIV 443
>gi|300816355|ref|ZP_07096577.1| FAD binding domain of DNA photolyase [Escherichia coli MS 107-1]
gi|415878911|ref|ZP_11544480.1| deoxyribodipyrimidine photolyase [Escherichia coli MS 79-10]
gi|432804787|ref|ZP_20038729.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE91]
gi|432933174|ref|ZP_20132895.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE184]
gi|433192652|ref|ZP_20376667.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE90]
gi|300531045|gb|EFK52107.1| FAD binding domain of DNA photolyase [Escherichia coli MS 107-1]
gi|342927077|gb|EGU95799.1| deoxyribodipyrimidine photolyase [Escherichia coli MS 79-10]
gi|431356972|gb|ELG43656.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE91]
gi|431455962|gb|ELH36312.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE184]
gi|431720608|gb|ELJ84634.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE90]
Length = 472
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 157/488 (32%), Positives = 241/488 (49%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P RP + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW Q AG++L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVKL--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|387606186|ref|YP_006095042.1| deoxyribodipyrimidine photolyase [Escherichia coli 042]
gi|284920486|emb|CBG33548.1| deoxyribodipyrimidine photolyase [Escherichia coli 042]
Length = 472
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 159/499 (31%), Positives = 243/499 (48%), Gaps = 59/499 (11%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLS---- 61
+VWFR+DLR+ DN ALAA R + V+A++I P R W H++S
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATP------------RQWATHNMSPRQA 52
Query: 62 -HLDSSLRSLGTSLVTK------RSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLV 110
+++ L L +L K R D ++ +E++K A T LF+N+ Y+
Sbjct: 53 KLINAQLNGLRIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERA 112
Query: 111 RDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDP 165
RD + + L + + F+ ++ P V + + F F W K L MP
Sbjct: 113 RDVQVERTL--RNVLCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP--- 167
Query: 166 DAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPL 225
+ PK +SG + PS TL + +S ++ + A L F
Sbjct: 168 -ECVAAPKVRSSGSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGA 220
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
EY + R TS LS L G +S R+ H + +Q + G AG +++L
Sbjct: 221 GEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLN 274
Query: 286 SIGLREYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMREL 344
+ RE+ R++ +P RP + W + +FKAW++G+TGYP+VDA MR+L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHRPFIVWTDRVQWQRNPAHFKAWQEGKTGYPIVDAAMRQL 334
Query: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 404
+TGW+H+R+R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 405 AFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
+ RI NP +G KFD GE++RRWLPEL +P + +H PW Q AG+ L +YP
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVTL--DYP 448
Query: 465 FPIVRIDAAKCRLDEALSE 483
PIV A+ R A E
Sbjct: 449 QPIVDHKEARLRTLAAYEE 467
>gi|323496501|ref|ZP_08101559.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
gi|323318778|gb|EGA71731.1| deoxyribodipyrimidine photolyase [Vibrio sinaloensis DSM 21326]
Length = 474
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 148/473 (31%), Positives = 232/473 (49%), Gaps = 36/473 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFRRDLR DN A A + + V+A FI P+ ++ + +K L L +
Sbjct: 3 LVWFRRDLRTIDNTAFIAAINSNEPVVAAFIATPDSWSQHHMAPMQADLIKRRLFELQND 62
Query: 67 LRSLGTSLVTKRSTDSVSSLLEV---VKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L SLG L+ ++D SS+ V VK T + N Y+ + RD +A++ALT
Sbjct: 63 LASLGVPLIYAETSDYASSVDVVCNWVKQYSVTSVHLNKEYEINEVRRDDKAEQALTRLD 122
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFA----AFWEKCLSMPFDPDAPLLPPKRINSGD 179
+ + + + P V + QG F F A+ +K P + +++ + +
Sbjct: 123 VVLHRHDDKCQFIPGSVVNKQGHYFKVFTPYKRAYLQKLEQFP-------VQVQKVTAVN 175
Query: 180 MSRCPSDTL-VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
+ D +F + ++A+ L +F+ +Y R
Sbjct: 176 GQKAKVDECDLFSKDCSFRYPTEESQAYQVSTEQILDQLRSFVKEHSDDYQDERDFPAIE 235
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LSP+L G +SVR+ + +Q + +EG + +L + RE+ +++ +
Sbjct: 236 GTSRLSPYLAIGALSVRQCMARLLYQQTAPLSEGRQT-------WLSELIWREFYQHLLY 288
Query: 299 NHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
P S L W KAW+QG+TGYP+VDA MR+L TGW+H+R+R++
Sbjct: 289 FEPKLSRGESFLPWGVHLRWENCPRRIKAWQQGQTGYPIVDAAMRQLNQTGWMHNRLRMI 348
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V+SF VK LQ+ WR G YF L+D + ++ GWQ+ + T DG+ + RI NP +G
Sbjct: 349 VASFLVKDLQVDWRVGEDYFMSKLVDGEYAANNGGWQWCASTGCDGQPYFRIFNPTTQGE 408
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHP--WNAPESVLQAAGIELGSNYPFPIV 468
+FDP GE+VRRW+PELA LP + IH P W + + GS+YP PIV
Sbjct: 409 RFDPKGEFVRRWVPELADLPDKQIHQPSKWLSVK----------GSSYPAPIV 451
>gi|424590980|ref|ZP_18030413.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1037(10)]
gi|408033486|gb|EKG70033.1| deoxyribodipyrimidine photo-lyase [Vibrio cholerae CP1037(10)]
Length = 469
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 147/463 (31%), Positives = 233/463 (50%), Gaps = 28/463 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFRRDLR DN AL A + +G V A++I PE+ ++ + + L+ L
Sbjct: 3 LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQE 62
Query: 67 LRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L +L L ++ D + ++ ++ K A Q+ N Y+ RD A++ L+ QG
Sbjct: 63 LAALNVPLFYQQVADFQAAAVAVSQLAKTLNAKQVLANRDYELDEQQRDQSAQQLLSEQG 122
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I +F+ + P V QG+ F F F L++ F P P++ R +
Sbjct: 123 ITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTL-FQP--PVIGKNR--PAALWNV 177
Query: 184 PSDT--LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
PS LV+ E + + W+ + L F + +Y + R TS
Sbjct: 178 PSALAELVWHPEQAFDYPRIDSTPWAADFETVRAQLREFCRERVQDYHQARDFPAQEGTS 237
Query: 242 FLSPHLHFGEVSVR----KVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
LSP+L G +S R +++H + ++S EG +A +L + RE+ +++
Sbjct: 238 SLSPYLAIGVLSARQCVARLYHESSMGELS---EGAQA-------WLSELIWREFYQHLV 287
Query: 298 FNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
P S R + W D F+ W +G+TGYP+VDA MR+L TGW+H+R+R+
Sbjct: 288 AIEPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+V+SF K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP +G
Sbjct: 348 IVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQG 407
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAP--ESVLQAAGI 457
KFDPNG+++RRW+PEL + + +IH PW P SVL A +
Sbjct: 408 EKFDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVNSVLYPARL 450
>gi|74311231|ref|YP_309650.1| deoxyribodipyrimidine photolyase [Shigella sonnei Ss046]
gi|383177275|ref|YP_005455280.1| deoxyribodipyrimidine photolyase [Shigella sonnei 53G]
gi|414574906|ref|ZP_11432114.1| deoxyribodipyrimidine photo-lyase [Shigella sonnei 3233-85]
gi|415852664|ref|ZP_11529001.1| deoxyribodipyrimidine photo-lyase [Shigella sonnei 53G]
gi|418262740|ref|ZP_12884110.1| deoxyribodipyrimidine photolyase [Shigella sonnei str. Moseley]
gi|420357235|ref|ZP_14858251.1| deoxyribodipyrimidine photo-lyase [Shigella sonnei 3226-85]
gi|420362190|ref|ZP_14863113.1| deoxyribodipyrimidine photolyase [Shigella sonnei 4822-66]
gi|73854708|gb|AAZ87415.1| deoxyribodipyrimidine photolyase (photoreactivation) [Shigella
sonnei Ss046]
gi|323163860|gb|EFZ49670.1| deoxyribodipyrimidine photo-lyase [Shigella sonnei 53G]
gi|391288522|gb|EIQ47023.1| deoxyribodipyrimidine photo-lyase [Shigella sonnei 3233-85]
gi|391288971|gb|EIQ47470.1| deoxyribodipyrimidine photo-lyase [Shigella sonnei 3226-85]
gi|391296578|gb|EIQ54667.1| deoxyribodipyrimidine photolyase [Shigella sonnei 4822-66]
gi|397902948|gb|EJL19256.1| deoxyribodipyrimidine photolyase [Shigella sonnei str. Moseley]
Length = 472
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 154/482 (31%), Positives = 240/482 (49%), Gaps = 39/482 (8%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPSPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESV-NLFLKSIGLREYSRY 295
TS LS L G +S R+ H + +Q +A D V +++L + RE+ R+
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQ-------PQALDGGVGSVWLNELIWREFYRH 284
Query: 296 MSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
+ HP RP++ W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+
Sbjct: 285 LITYHPSLCKHRPIIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRL 344
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP
Sbjct: 345 RMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTT 404
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
+G KFD GE++R+WLPEL +P + +H PW Q AG++L +YP PIV A+
Sbjct: 405 QGEKFDLEGEFIRQWLPELRNVPGKSVHEPWKWA----QKAGVKL--DYPQPIVEHKEAR 458
Query: 475 CR 476
+
Sbjct: 459 VQ 460
>gi|417275265|ref|ZP_12062602.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.2303]
gi|425271411|ref|ZP_18662912.1| deoxyribodipyrimidine photo-lyase [Escherichia coli TW15901]
gi|425282067|ref|ZP_18673178.1| deoxyribodipyrimidine photo-lyase [Escherichia coli TW00353]
gi|386241918|gb|EII78831.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.2303]
gi|408197852|gb|EKI23101.1| deoxyribodipyrimidine photo-lyase [Escherichia coli TW15901]
gi|408205618|gb|EKI30474.1| deoxyribodipyrimidine photo-lyase [Escherichia coli TW00353]
Length = 472
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 154/481 (32%), Positives = 238/481 (49%), Gaps = 37/481 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPSPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLNELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
HP RP + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 ITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 IITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++R+WLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 406 GEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGVTL--DYPQPIVEHKEARV 459
Query: 476 R 476
+
Sbjct: 460 Q 460
>gi|301647446|ref|ZP_07247253.1| FAD binding domain of DNA photolyase [Escherichia coli MS 146-1]
gi|301074420|gb|EFK89226.1| FAD binding domain of DNA photolyase [Escherichia coli MS 146-1]
Length = 472
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 154/481 (32%), Positives = 238/481 (49%), Gaps = 37/481 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPSPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLNELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
HP RP + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 ITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++R+WLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 406 GEKFDQGGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGVTL--DYPQPIVEHKEARV 459
Query: 476 R 476
+
Sbjct: 460 Q 460
>gi|284046106|ref|YP_003396446.1| deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
gi|283950327|gb|ADB53071.1| Deoxyribodipyrimidine photo-lyase [Conexibacter woesei DSM 14684]
Length = 476
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 152/469 (32%), Positives = 233/469 (49%), Gaps = 25/469 (5%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+IVWFRRDLR+ D+P L + A A V+ VF+ P + ++ L LD+
Sbjct: 6 AIVWFRRDLRLHDHPPLVRALAAHARVVPVFVLDPAIVRGRFASGARTAFMLDCLRELDA 65
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
LR G+ LV + L + + GA + + P ++ RD R + AL A A
Sbjct: 66 DLRERGSGLVVREGRPE-RELPALAREIGAAAVHWASDATPYAIARDRRVRSALAAAQPA 124
Query: 126 VRSFNA--DLLYEPWDVNDAQGQPFATFAAF---WEKCLSMPFDPDAPLLPPKRINSGDM 180
V + + + + G P+ F F W++ +LPP + +G +
Sbjct: 125 VAAVPGPGNFVADVGRPRTRAGGPYTVFTPFHRAWQQLERRTVHRTPAVLPP--LPAG-L 181
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
R +L +++ S ARA PG A +A +++G L +Y+++ + + T
Sbjct: 182 RRGALPSLAALGLTDELSPT--ARAVEPGERAARRAAERWLDGHLGDYARDHDRL-AGGT 238
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP+LH G +S R+ + G E F++ + R++ ++ +H
Sbjct: 239 SALSPYLHHGCLSAREC-----------EQRAVRRGGEGAEAFVRQLAWRDFYAHVLLHH 287
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P R ++ W D+ AW+ GRTG+PLVDAGMR+L A+GW+H+R R+V S
Sbjct: 288 PEDVRREHQERMRALRWERDDELLAAWQDGRTGFPLVDAGMRQLRASGWMHNRARLVTGS 347
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPD-GRAFDRIDNPQFEGYKF 419
F K LQL WR G +F LLD D+ S+ WQ+I+ D AF RI NP + +
Sbjct: 348 FLTKDLQLDWRAGEAWFMRWLLDGDVASNNGNWQWIASVGVDPAPAFRRILNPALQQRRH 407
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
DP+G YVRRW+PELAR+P + PW E +AAG +G++YP PIV
Sbjct: 408 DPDGAYVRRWVPELARVPDALLTEPWLMSEQQQRAAGCRIGADYPAPIV 456
>gi|145588429|ref|YP_001155026.1| deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145046835|gb|ABP33462.1| deoxyribodipyrimidine photo-lyase type I [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 492
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 154/490 (31%), Positives = 230/490 (46%), Gaps = 37/490 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPEEEGPYYPGRVSRWWLKH-------- 58
+VW RRDLR+ DN AL ++ + V FI+ E P G + LKH
Sbjct: 5 LVWLRRDLRLYDNAALHYALKESKQVWVTFIFDEEILKPLLKGELDAQRLKHDRRVDFIW 64
Query: 59 -SLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKE 117
L +D LR G L+ R V + ++ K G +F NH Y+P ++ RD K
Sbjct: 65 QGLEQIDEELRKQGGGLIV-RFGKPVECIPQIAKDLGVDTVFTNHDYEPSAIARDEAVKT 123
Query: 118 ALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINS 177
L I SF +++E ++ F+ F + L + D +
Sbjct: 124 LLAKSDIQFESFKDQVIFEKKEILTNSNTVFSIFTPYKNNWLKTLQEKDL-VAYECSAKP 182
Query: 178 GDMSRCPSD------TLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLI-EYSK 230
G + P TL + G A L PG L F+ P I +Y
Sbjct: 183 GQFAAIPKKLAQEIPTLESMGFCKTGIEAYL----PPGAEGGQAFLEDFL--PRIDQYQV 236
Query: 231 NRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLR 290
R S+LS HL FG +S+R + V A+ AG ++L + R
Sbjct: 237 GRDFPAIKGVSYLSTHLRFGMLSIRGL--------VREAHRRMLAGSMGATIWLSELIWR 288
Query: 291 EYSRYMSFNHPYSHE----RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWA 346
++ + NHP + +P ++ + V + F AW +G+TGYPLVDA M +L
Sbjct: 289 DFYFMILANHPRLAKGASFKPDYDNIVWEQGSVAKKLFAAWCEGKTGYPLVDAAMHQLNQ 348
Query: 347 TGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAF 406
+G++H+R+R+VV+SF K L + WRWG YF + L D +L S+ GWQ+ S + D + +
Sbjct: 349 SGYMHNRLRMVVASFLTKDLGVDWRWGEAYFAEHLNDFELSSNNGGWQWASSSGCDAQPY 408
Query: 407 DRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFP 466
RI NP + KFDP G+++RR+LP+L L + IH PW A L+AAGI LG +YP P
Sbjct: 409 FRIFNPITQSEKFDPEGKFIRRYLPQLNHLSKKSIHAPWKAGHIELEAAGITLGRDYPLP 468
Query: 467 IVRIDAAKCR 476
+V D A+ +
Sbjct: 469 VVDHDEARKK 478
>gi|149202510|ref|ZP_01879482.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035]
gi|149143792|gb|EDM31826.1| Deoxyribodipyrimidine photolyase [Roseovarius sp. TM1035]
Length = 473
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 141/444 (31%), Positives = 219/444 (49%), Gaps = 24/444 (5%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHS 59
M+ SIVW RRDLR+ D+PAL A + G AVI VFI +E G +W L S
Sbjct: 1 MTDIAPSIVWLRRDLRLADHPALCAALAGGGAVIPVFI---HDESVEALGAAPKWRLGLS 57
Query: 60 LSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
L+ L L + G+ L+ +R ++ L +V TGA + ++ LYDP S+ RD K AL
Sbjct: 58 LASLARDLAACGSRLILRRGA-ALDVLRALVAETGAGAVHWSRLYDPQSIARDKAVKSAL 116
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFW----EKCLSMPFDPDAPLLPPKRI 175
G+ +S +++EPW V G + ++ W ++ +++P + PK
Sbjct: 117 REAGVDAQSHPGHVMFEPWTVETKTGGFYRVYSPMWRAVKDRDVAVPLTAPGQIPAPKVW 176
Query: 176 NSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
+ D D +G++ L G + A + L F +G + EY R
Sbjct: 177 PASD----SLDDWQMGAAMYRGADVCLPYQ-RVGEAAAMERLHAFADGAIAEYQDARNFP 231
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
TS LS +L +GE+S R+ +H G + +LK + RE++ +
Sbjct: 232 AVDATSALSENLTYGEISPRQCWHA--------GQRALHGGAKGAETWLKELVWREFAYH 283
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVDEGY--FKAWRQGRTGYPLVDAGMRELWATGWLHDR 353
+ ++ P+ F W D + AW+QGRTG P VDA MRE++ TG +H+R
Sbjct: 284 LMYHTPHILSGNWRTDWDAFPWSTDADHPEVIAWKQGRTGEPFVDAAMREMYVTGKMHNR 343
Query: 354 IRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQ 413
R++V+S+ K L W+ G+ +F + L D D S+A+GWQ+ +G PD + R+ NP+
Sbjct: 344 ARMIVASYLTKHLMTHWKIGLDWFAECLTDWDPASNAMGWQWAAGCGPDAAPYFRVFNPE 403
Query: 414 FEGYKFDPNGEYVRRWLPELARLP 437
+ KFD G Y RRW+ E R P
Sbjct: 404 TQLDKFDRGGAYTRRWIAEGQRTP 427
>gi|424817110|ref|ZP_18242261.1| deoxyribodipyrimidine photolyase [Escherichia fergusonii ECD227]
gi|325498130|gb|EGC95989.1| deoxyribodipyrimidine photolyase [Escherichia fergusonii ECD227]
Length = 472
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 158/499 (31%), Positives = 241/499 (48%), Gaps = 59/499 (11%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLS---- 61
+VWFR+DLR+ DN ALAA R + V+A++I P R W H++S
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSAHVLALYIATP------------RQWAAHNMSPRQA 52
Query: 62 -HLDSSLRSLGTSLVTK------RSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLV 110
+++ L L +L K D ++ +E+VK A T LF+N+ Y+
Sbjct: 53 EFINAQLNGLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERA 112
Query: 111 RDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDP 165
RD + AL + + F+ ++ P V + + F F W K L MP
Sbjct: 113 RDVEVERAL--RNVVCEGFDDCVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP--- 167
Query: 166 DAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPL 225
+ PK +SG + PS TL + +S ++ + A L F
Sbjct: 168 -ECVAAPKVRSSGSLDPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGA 220
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
+Y + R TS LS L G +S R+ H + +Q + G AG +++L
Sbjct: 221 SQYDQQRDFPAVEGTSRLSASLATGRLSPRQCLHRLLAEQPQALDGG--AG----SVWLN 274
Query: 286 SIGLREYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMREL 344
+ RE+ R++ HP RP + W + + KAW++G+TGYP+VDA MR+L
Sbjct: 275 ELIWREFYRHLMTYHPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQL 334
Query: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 404
+TGW+H+R+R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 405 AFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
+ RI NP +G KFD GE++R+WLPEL +P + +H PW Q AG+ L +YP
Sbjct: 395 PYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKAVHEPWKWA----QKAGVML--DYP 448
Query: 465 FPIVRIDAAKCRLDEALSE 483
PIV A+ R A E
Sbjct: 449 QPIVDHKEARLRTLAAYEE 467
>gi|212711667|ref|ZP_03319795.1| hypothetical protein PROVALCAL_02742 [Providencia alcalifaciens DSM
30120]
gi|212685769|gb|EEB45297.1| hypothetical protein PROVALCAL_02742 [Providencia alcalifaciens DSM
30120]
Length = 477
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 153/498 (30%), Positives = 238/498 (47%), Gaps = 30/498 (6%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHL 63
C +VWFR DLRV DN AL VI V+I PE+ + +L +L L
Sbjct: 4 CHLVWFRNDLRVTDNKALTFACEDPTATVIGVYIATPEQWATHNVSPRQIAFLHQNLVEL 63
Query: 64 DSSLRSLGTSLVTKRST---DSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+L G L+ + DSV LL+ + AT L+FNH Y+ +RD + ++
Sbjct: 64 QHALAKRGIPLICHTAATFADSVKWLLDFAQQQNATGLYFNHQYELNERLRDEQLRQ--Q 121
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
+Q + + +++ LL P V +G + + F LS D P + +
Sbjct: 122 SQHLNILTYDDALLLPPGSVTTQKGDMYQVYTPFRRAFLSQLMMSDFRSFPAPKPRGAAL 181
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
+ + L F +S + S +A G A L F + + +Y ++R T
Sbjct: 182 AVENTHPL-FVHQSVETSPQFIA-----GEHAALAKLRQFCSERVQDYQRDRDIPAINGT 235
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP+L G +S R+ + + + + + ++G S +L + RE+ ++
Sbjct: 236 SQLSPYLALGVLSPRQCVNRL-LAENPQVFDSQESGGFS---WLNELIWREFYSHLLVAF 291
Query: 301 P-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P +P + + W D+ F AW+ G+TGYP+VDA MR+L TGW+H+R+R++V+
Sbjct: 292 PRLCRHQPFIKWTQHIQWNPDDAIFSAWKSGQTGYPIVDAAMRQLNQTGWMHNRLRMIVA 351
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L + WR G YF L+D L ++ GWQ+ + T D + RI NP +G KF
Sbjct: 352 SFLVKDLLVDWRKGEHYFMSQLIDGTLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKF 411
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP G ++R WLPEL +P ++IH P ES ++ NYP PIV A+ E
Sbjct: 412 DPQGTFIREWLPELRDVPEKFIHEPHTWAESH------QVSLNYPTPIVDHKQARLMTLE 465
Query: 480 ALSEMWQQEAASRAAIEN 497
A EA R +I+
Sbjct: 466 AF------EAGKRKSIKK 477
>gi|386052851|ref|YP_005970409.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes Finland
1998]
gi|346645502|gb|AEO38127.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes Finland
1998]
Length = 467
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 138/464 (29%), Positives = 227/464 (48%), Gaps = 23/464 (4%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S++WFRRDLRV DN AL + ++ +F P + + G S S++H
Sbjct: 2 TSVMWFRRDLRVSDNKALYHACKEDDLLLLFQVNPAQ---FITGSPSHQAFFASVAHFKQ 58
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA-TQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ T+L+ + V L ++ + + +++FN RD AK Q I
Sbjct: 59 EVDK--TALLQIMFGEPVGCLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFFDEQEI 116
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V++F+ L+ +V + + + F +++K + + P K D R
Sbjct: 117 EVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKK-----WREEIKETPFKVTLKADNIR-- 169
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
+ L + E + G A+ L FI + +Y K R + TS LS
Sbjct: 170 KENLFPKYEEQFAEMTCDFPILDSGEKTANTRLANFIKHDIADYDKARDFPELDKTSHLS 229
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
+L GE+S+R ++ + Q + A EG F K + R++ + + P
Sbjct: 230 RYLRTGEISIRTIWQAL---QETEATEGRAT-------FEKELCWRDFYNMIYVSFPNQK 279
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
P+ + +F W + +FKAW+ G+TG+PLVDA MR+L TGW+H+R+R+V +SF K
Sbjct: 280 NEPIQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTK 339
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L + WR+G KYF L+D D S+ GWQ+ + T D + RI NP + KFDP G+
Sbjct: 340 DLLIDWRFGEKYFQQMLIDYDSASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGK 399
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
++R+++ ELA LP ++IH P E+ + G+ LG +YPFP++
Sbjct: 400 FIRKYVKELANLPDKYIHQPEKMSETEQKEYGLLLGKDYPFPLI 443
>gi|423099697|ref|ZP_17087404.1| putative deoxyribodipyrimidine photo-lyase [Listeria innocua ATCC
33091]
gi|370793782|gb|EHN61607.1| putative deoxyribodipyrimidine photo-lyase [Listeria innocua ATCC
33091]
Length = 467
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 141/468 (30%), Positives = 230/468 (49%), Gaps = 31/468 (6%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S++WFRRDLRV DN AL + +I +F PE+ + G S S++H
Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEEDLILLFQVNPEQ---FIKGSPSHQAFFASVAHFQQ 58
Query: 66 SL-RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
L R+ ++ + + L E K ++FFN RD A+ + I
Sbjct: 59 ELNRNSHLQIMFGEPIELLKQLKE--KIPTWDKVFFNRDETGYGASRDEAARAFFADKEI 116
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEK----CLSMPFDPDAPLLPPKRINSGDM 180
V S++ L+ +V + + + F +++K MP L P++I +
Sbjct: 117 TVHSYHDSYLHSAEEVKKSATEYYKIFTPYYKKWREEIKEMPL---KVTLKPEKIRKESL 173
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
P+ +E++ + L A+ G A+ L F+ L +Y K R T
Sbjct: 174 --FPN----YEEQFRELIQDL--PAFDSGEKAANTRLANFVKEDLADYDKARDVPALDKT 225
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LS +L GE+S+R V+ ++ ++ A EG F K + R++ + +
Sbjct: 226 SHLSRYLRTGEISIRTVWQALQKEE---ATEGRAT-------FEKELCWRDFYNMIYVSF 275
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P P+ + +F W + +FK W+ G+TG+PLVDA MR+L TGW+H+R+R++ +S
Sbjct: 276 PKQKNEPIQENYRFIEWENNREFFKKWQDGQTGFPLVDAAMRQLKETGWMHNRLRMITAS 335
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L + WR+G KYF L+D D S+ GWQ+ + T D + RI NP + KFD
Sbjct: 336 FLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFD 395
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
P+G ++R+++ EL LP ++IH P E+ + G+ LG +YPFPI+
Sbjct: 396 PDGTFIRKYVKELQDLPNKFIHQPEKMSETEQKEHGLILGKDYPFPII 443
>gi|384422583|ref|YP_005631942.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae LMA3984-4]
gi|327485291|gb|AEA79697.1| Deoxyribodipyrimidine photolyase [Vibrio cholerae LMA3984-4]
Length = 469
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 145/463 (31%), Positives = 231/463 (49%), Gaps = 28/463 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFRRDLR DN AL A + +G V A++I PE+ ++ + + L+ L
Sbjct: 3 LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQE 62
Query: 67 LRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L +L L ++ D + ++ ++ K A Q+ N Y+ RD A++ L+ QG
Sbjct: 63 LAALNVPLFYQQVADFQAAAVAVSQLAKTLNAIQVLANRDYELDEQQRDQSAQQLLSEQG 122
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I +F+ + P V QG+ F F F L++ F P P++ R +
Sbjct: 123 ITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTL-FQP--PVIGKNR--PAALWDV 177
Query: 184 PSDT--LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
PS LV+ E + + W+ + L F + +Y + R TS
Sbjct: 178 PSALAELVWHPEQTFDYPRVDSTPWAADFETVRAQLRGFCRERVQDYHQARDFPAREGTS 237
Query: 242 FLSPHLHFGEVSVR----KVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
LSP+L G +S R +++H + ++S E ++L + RE+ +++
Sbjct: 238 SLSPYLAIGVLSARQCVARLYHESSMGELS----------EGAQVWLSELIWREFYQHLV 287
Query: 298 FNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
P S R + W D F+ W +G+TGYP+VDA MR+L TGW+H+R+R+
Sbjct: 288 AIEPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+V+SF K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP +G
Sbjct: 348 IVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQG 407
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAP--ESVLQAAGI 457
KFDPNG+++RRW+PEL + + +IH PW P SVL A +
Sbjct: 408 EKFDPNGDFIRRWVPELRSVSSAYIHQPWTYPAVNSVLYPARL 450
>gi|428320773|ref|YP_007118655.1| deoxyribodipyrimidine photo-lyase type I [Oscillatoria
nigro-viridis PCC 7112]
gi|428244453|gb|AFZ10239.1| deoxyribodipyrimidine photo-lyase type I [Oscillatoria
nigro-viridis PCC 7112]
Length = 484
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 140/445 (31%), Positives = 218/445 (48%), Gaps = 22/445 (4%)
Query: 8 IVWFRRDLRVEDNPALAAG-VRAGAVIAVFIWAPE--EEGPYYPGRVSRWWLKHSLSHLD 64
+ W RRDLR+ DN LAA ++ V+ +F P RV+ ++ L L
Sbjct: 9 LFWHRRDLRISDNIGLAAARQQSPKVVGIFCLDRNILNRDDVAPARVT--YMIGCLQKLS 66
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
S R G+ L+ + D + + ++ A A +F+N +P + RD AL GI
Sbjct: 67 SRYREAGSQLLIIQD-DPILGIPKLATAINAQAVFWNWDVEPYAKQRDRSVSNALQQAGI 125
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V++F +L+ P ++ G P+ + FW+K S P LP + M+
Sbjct: 126 QVQNFWDQVLHAPDEIRSGTGTPYTVYTPFWKKWNSKPKAQPVETLPITYLEL--MTGLT 183
Query: 185 SDTLVFEDES---EKGSNAL-LARAWS------PGWSNADKALTTFINGPLIEYSKNRRK 234
++ +++ E AL L W PG A + L F + + EY R
Sbjct: 184 AEEQAIANQAGAMETVPTALSLGFIWENPLVIEPGEDAAQQKLEEFCDRAIYEYQGQRNF 243
Query: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSR 294
TS LS L FG + +R V+ +I + +E S+ + + I RE+ +
Sbjct: 244 PAINGTSQLSAALKFGAIGIRTVWQATQIVMDTCRSE---EACTSIRTWQQEIAWREFYQ 300
Query: 295 YMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
+ +N P + P K F W DE F+AW +G+TGYP++DA MR+L TGW+H+R
Sbjct: 301 HAMYNFPELADGPYRQAFKDFPWENDEKLFQAWCRGKTGYPIIDAAMRQLNQTGWMHNRC 360
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R++V+SF K L + W+WG KYF L+D DL ++ GWQ+ + + D + RI NP
Sbjct: 361 RMIVASFLTKDLMINWQWGEKYFMQKLIDGDLSANNGGWQWSASSGMDPKPL-RIFNPGS 419
Query: 415 EGYKFDPNGEYVRRWLPELARLPTE 439
+ KFDP GEY+R W+PEL R+ T+
Sbjct: 420 QAQKFDPEGEYIRHWVPELRRVDTK 444
>gi|417152493|ref|ZP_11991284.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0497]
gi|417579974|ref|ZP_12230792.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_B2F1]
gi|345343163|gb|EGW75553.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_B2F1]
gi|386169217|gb|EIH35725.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.0497]
Length = 472
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 242/488 (49%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F +Y + R
Sbjct: 178 SGSIEPSPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGDYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P RP + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D ++ RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAASYFRIFNPITQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW Q AG++L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVKL--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|16128683|ref|NP_415236.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
str. K-12 substr. MG1655]
gi|157160187|ref|YP_001457505.1| deoxyribodipyrimidine photolyase [Escherichia coli HS]
gi|170080375|ref|YP_001729695.1| deoxyribodipyrimidine photolyase [Escherichia coli str. K-12
substr. DH10B]
gi|188495323|ref|ZP_03002593.1| deoxyribodipyrimidine photolyase [Escherichia coli 53638]
gi|238899973|ref|YP_002925769.1| deoxyribodipyrimidine photolyase [Escherichia coli BW2952]
gi|300947213|ref|ZP_07161423.1| FAD binding domain of DNA photolyase [Escherichia coli MS 116-1]
gi|301027120|ref|ZP_07190490.1| FAD binding domain of DNA photolyase [Escherichia coli MS 196-1]
gi|331641209|ref|ZP_08342344.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
H736]
gi|386279721|ref|ZP_10057398.1| deoxyribodipyrimidine photo-lyase [Escherichia sp. 4_1_40B]
gi|386596450|ref|YP_006092850.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DH1]
gi|386612874|ref|YP_006132540.1| deoxyribodipyrimidine photo-lyase [Escherichia coli UMNK88]
gi|386703878|ref|YP_006167725.1| deoxyribodipyrimidine photo-lyase [Escherichia coli P12b]
gi|387611194|ref|YP_006114310.1| deoxyribodipyrimidine photolyase [Escherichia coli ETEC H10407]
gi|387620441|ref|YP_006128068.1| deoxyribodipyrimidine photolyase [Escherichia coli DH1]
gi|388476800|ref|YP_488988.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
str. K-12 substr. W3110]
gi|404374035|ref|ZP_10979256.1| deoxyribodipyrimidine photo-lyase [Escherichia sp. 1_1_43]
gi|415779760|ref|ZP_11490368.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3431]
gi|417263831|ref|ZP_12051227.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2.3916]
gi|417289733|ref|ZP_12077016.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B41]
gi|417611744|ref|ZP_12262216.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_EH250]
gi|417617145|ref|ZP_12267575.1| deoxyribodipyrimidine photo-lyase [Escherichia coli G58-1]
gi|417633312|ref|ZP_12283531.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_S1191]
gi|417978300|ref|ZP_12619070.1| deoxyribodipyrimidine photolyase [Escherichia coli XH001]
gi|418301560|ref|ZP_12913354.1| deoxyribodipyrimidine photo-lyase [Escherichia coli UMNF18]
gi|418959002|ref|ZP_13510908.1| FAD binding domain of DNA photolyase [Escherichia coli J53]
gi|419141228|ref|ZP_13685982.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC6A]
gi|419147934|ref|ZP_13692616.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC6B]
gi|419152587|ref|ZP_13697171.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC6C]
gi|419158032|ref|ZP_13702550.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC6D]
gi|419162948|ref|ZP_13707425.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC6E]
gi|419174310|ref|ZP_13718163.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC7B]
gi|419813054|ref|ZP_14337911.1| deoxyribodipyrimidine photolyase [Escherichia coli O32:H37 str. P4]
gi|419941134|ref|ZP_14457838.1| deoxyribodipyrimidine photolyase [Escherichia coli 75]
gi|421777685|ref|ZP_16214278.1| FAD binding domain of DNA photolyase [Escherichia coli AD30]
gi|422765233|ref|ZP_16818960.1| DNA photolyase [Escherichia coli E1520]
gi|422769902|ref|ZP_16823593.1| DNA photolyase [Escherichia coli E482]
gi|422816682|ref|ZP_16864897.1| deoxyribodipyrimidine photo-lyase [Escherichia coli M919]
gi|423701454|ref|ZP_17675913.1| deoxyribodipyrimidine photo-lyase [Escherichia coli H730]
gi|432368655|ref|ZP_19611757.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE10]
gi|432415634|ref|ZP_19658260.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE44]
gi|432484405|ref|ZP_19726326.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE212]
gi|432562581|ref|ZP_19799205.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE51]
gi|432579359|ref|ZP_19815791.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE56]
gi|432635985|ref|ZP_19871868.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE81]
gi|432669615|ref|ZP_19905157.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE119]
gi|432684517|ref|ZP_19919830.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE156]
gi|432690605|ref|ZP_19925845.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE161]
gi|432703246|ref|ZP_19938368.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE171]
gi|432736214|ref|ZP_19970985.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE42]
gi|432953923|ref|ZP_20146099.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE197]
gi|433046837|ref|ZP_20234252.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE120]
gi|433172540|ref|ZP_20357095.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE232]
gi|442592298|ref|ZP_21010276.1| Deoxyribodipyrimidine photolyase [Escherichia coli O10:K5(L):H4
str. ATCC 23506]
gi|450240361|ref|ZP_21899301.1| deoxyribodipyrimidine photolyase [Escherichia coli S17]
gi|130152|sp|P00914.1|PHR_ECOLI RecName: Full=Deoxyribodipyrimidine photo-lyase; AltName: Full=DNA
photolyase; AltName: Full=Photoreactivating enzyme
gi|147268|gb|AAA24388.1| deoxyribopyrimidine photolyase [Escherichia coli]
gi|1651311|dbj|BAA35367.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
str. K12 substr. W3110]
gi|1786926|gb|AAC73802.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
str. K-12 substr. MG1655]
gi|6006450|emb|CAB56782.1| DNA photolyase [Escherichia coli str. K-12 substr. W3110]
gi|157065867|gb|ABV05122.1| deoxyribodipyrimidine photolyase [Escherichia coli HS]
gi|169888210|gb|ACB01917.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
str. K-12 substr. DH10B]
gi|188490522|gb|EDU65625.1| deoxyribodipyrimidine photolyase [Escherichia coli 53638]
gi|238860746|gb|ACR62744.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
BW2952]
gi|260450139|gb|ACX40561.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli DH1]
gi|299879409|gb|EFI87620.1| FAD binding domain of DNA photolyase [Escherichia coli MS 196-1]
gi|300453199|gb|EFK16819.1| FAD binding domain of DNA photolyase [Escherichia coli MS 116-1]
gi|309700930|emb|CBJ00227.1| deoxyribodipyrimidine photolyase [Escherichia coli ETEC H10407]
gi|315135364|dbj|BAJ42523.1| deoxyribodipyrimidine photolyase [Escherichia coli DH1]
gi|315614653|gb|EFU95294.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3431]
gi|323938286|gb|EGB34543.1| DNA photolyase [Escherichia coli E1520]
gi|323942969|gb|EGB39132.1| DNA photolyase [Escherichia coli E482]
gi|331038007|gb|EGI10227.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
H736]
gi|332342043|gb|AEE55377.1| deoxyribodipyrimidine photo-lyase [Escherichia coli UMNK88]
gi|339413658|gb|AEJ55330.1| deoxyribodipyrimidine photo-lyase [Escherichia coli UMNF18]
gi|344192086|gb|EGV46186.1| deoxyribodipyrimidine photolyase [Escherichia coli XH001]
gi|345365093|gb|EGW97202.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_EH250]
gi|345380317|gb|EGX12216.1| deoxyribodipyrimidine photo-lyase [Escherichia coli G58-1]
gi|345390026|gb|EGX19825.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_S1191]
gi|359331407|dbj|BAL37854.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
str. K-12 substr. MDS42]
gi|377998038|gb|EHV61135.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC6B]
gi|377998843|gb|EHV61930.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC6A]
gi|378002822|gb|EHV65871.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC6C]
gi|378012496|gb|EHV75425.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC6D]
gi|378016090|gb|EHV78978.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC6E]
gi|378037167|gb|EHV99702.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC7B]
gi|383102046|gb|AFG39555.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli P12b]
gi|384378258|gb|EIE36143.1| FAD binding domain of DNA photolyase [Escherichia coli J53]
gi|385154056|gb|EIF16075.1| deoxyribodipyrimidine photolyase [Escherichia coli O32:H37 str. P4]
gi|385539770|gb|EIF86600.1| deoxyribodipyrimidine photo-lyase [Escherichia coli M919]
gi|385712409|gb|EIG49361.1| deoxyribodipyrimidine photo-lyase [Escherichia coli H730]
gi|386123138|gb|EIG71738.1| deoxyribodipyrimidine photo-lyase [Escherichia sp. 4_1_40B]
gi|386222388|gb|EII44815.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2.3916]
gi|386255771|gb|EIJ05459.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B41]
gi|388401489|gb|EIL62132.1| deoxyribodipyrimidine photolyase [Escherichia coli 75]
gi|404292392|gb|EJZ49216.1| deoxyribodipyrimidine photo-lyase [Escherichia sp. 1_1_43]
gi|408457311|gb|EKJ81109.1| FAD binding domain of DNA photolyase [Escherichia coli AD30]
gi|430888371|gb|ELC11090.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE10]
gi|430943211|gb|ELC63336.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE44]
gi|431017951|gb|ELD31402.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE212]
gi|431098727|gb|ELE04039.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE51]
gi|431108027|gb|ELE12189.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE56]
gi|431173356|gb|ELE73435.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE81]
gi|431213145|gb|ELF11062.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE119]
gi|431224426|gb|ELF21651.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE156]
gi|431229344|gb|ELF25994.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE161]
gi|431246573|gb|ELF40832.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE171]
gi|431285754|gb|ELF76589.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE42]
gi|431469865|gb|ELH49791.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE197]
gi|431571310|gb|ELI44199.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE120]
gi|431695760|gb|ELJ61054.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE232]
gi|441607957|emb|CCP95723.1| Deoxyribodipyrimidine photolyase [Escherichia coli O10:K5(L):H4
str. ATCC 23506]
gi|449324524|gb|EMD14453.1| deoxyribodipyrimidine photolyase [Escherichia coli S17]
Length = 472
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 154/481 (32%), Positives = 238/481 (49%), Gaps = 37/481 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPSPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLNELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
HP RP + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 ITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++R+WLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 406 GEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGVTL--DYPQPIVEHKEARV 459
Query: 476 R 476
+
Sbjct: 460 Q 460
>gi|432626253|ref|ZP_19862235.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE77]
gi|431164965|gb|ELE65345.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE77]
Length = 472
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 154/481 (32%), Positives = 238/481 (49%), Gaps = 37/481 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPSPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLTTGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLNELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
HP RP + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 ITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++R+WLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 406 GEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGVTL--DYPQPIVEHKEARV 459
Query: 476 R 476
+
Sbjct: 460 Q 460
>gi|331645860|ref|ZP_08346963.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
M605]
gi|417661241|ref|ZP_12310822.1| deoxyribodipyrimidine photolyase [Escherichia coli AA86]
gi|432396599|ref|ZP_19639385.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE25]
gi|432722229|ref|ZP_19957153.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE17]
gi|432726771|ref|ZP_19961653.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE18]
gi|432740457|ref|ZP_19975179.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE23]
gi|432893435|ref|ZP_20105447.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE165]
gi|432989770|ref|ZP_20178437.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE217]
gi|433109992|ref|ZP_20295867.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE150]
gi|330910459|gb|EGH38969.1| deoxyribodipyrimidine photolyase [Escherichia coli AA86]
gi|331044612|gb|EGI16739.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
M605]
gi|430917571|gb|ELC38615.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE25]
gi|431268028|gb|ELF59542.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE17]
gi|431275480|gb|ELF66509.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE18]
gi|431286586|gb|ELF77412.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE23]
gi|431424415|gb|ELH06511.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE165]
gi|431498007|gb|ELH77223.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE217]
gi|431630927|gb|ELI99251.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE150]
Length = 472
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 155/488 (31%), Positives = 239/488 (48%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLNALQN 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ R D ++ +E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLF-REVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIDPAPSITLNYPCQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P RP + W + + KAW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++R+WLPEL +P + +H PW E G+ L +YP PIV A+
Sbjct: 406 GEKFDHEGEFIRQWLPELRDVPGKAVHEPWKWAEKT----GVTL--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|375133173|ref|YP_005049581.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio furnissii NCTC 11218]
gi|315182348|gb|ADT89261.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio furnissii NCTC 11218]
Length = 475
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 149/473 (31%), Positives = 223/473 (47%), Gaps = 36/473 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VW RRDLR DN AL + + AV A+F+ P + + + ++ L L +
Sbjct: 3 LVWLRRDLRSVDNTALNEALASDEAVCALFVATPTQWQQHDMAPMQADFIHRRLFALQTE 62
Query: 67 LRSLGTSLVTKRS---TDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L +L L+ + T++V ++ EV A A Q+ N Y+ RD +A E L QG
Sbjct: 63 LAALNVPLLYREVVTFTEAVDAVTEVASALHANQVLANRDYELNEQQRDAQAAERLHQQG 122
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I +SF+ + P V + QG F F F L+ P RI + ++
Sbjct: 123 IEWQSFDDKCVMPPGSVRNKQGDYFKVFTPFKRAWLTQ--------FSPPRIQASRAAKP 174
Query: 184 PS-----DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
S +L++ + + + AW + L F L +Y + R
Sbjct: 175 WSLPEALQSLLWCESQPFTHPRVSSDAWPVDFDTIRGRLRAFCQEQLDDYKQQRDFPAQD 234
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLRE-YSRYMS 297
TS LSP+L G +S R+ V +A A + +L + RE Y ++
Sbjct: 235 GTSSLSPYLAIGALSPRQCIARV------YAESAMGALSDGAQTWLSELIWREFYQHLLT 288
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
F S + L +W DE F W +G TGYP+VDA MR+L TGW+H+R+R++
Sbjct: 289 FEPKLSKSKDFLAWGARLTWWTDEAKFARWCEGNTGYPIVDAAMRQLNQTGWMHNRLRMI 348
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V+SF K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP +G
Sbjct: 349 VASFLTKDLHIDWRWGERYFMQHLVDGDYAANNGGWQWCASTGCDGQPYFRIFNPTTQGE 408
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHP--WNAPESVLQAAGIELGSNYPFPIV 468
KFDP G ++R+W+PELA +P IH P W S+L YP PIV
Sbjct: 409 KFDPQGRFIRQWVPELATVPEAHIHAPSNWGGVNSLL----------YPQPIV 451
>gi|386042915|ref|YP_005961720.1| deoxyribodipyrimidine photo-lyase [Listeria monocytogenes 10403S]
gi|404409820|ref|YP_006695408.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC5850]
gi|345536149|gb|AEO05589.1| deoxyribodipyrimidine photo-lyase [Listeria monocytogenes 10403S]
gi|404229646|emb|CBY51050.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC5850]
Length = 467
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 141/464 (30%), Positives = 225/464 (48%), Gaps = 23/464 (4%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S++WFRRDLRV DN AL + ++ +F P + G S S++H
Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEDDLLLLFQVNP---AQFITGSPSHQAFFASVAHFKQ 58
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA-TQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ T+L+ + V L ++ + + +++FN RD AK Q I
Sbjct: 59 EVDK--TALLQIMFGEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFFDEQEI 116
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V++F+ L+ +V + + + F +++K + + P K D R
Sbjct: 117 EVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKK-----WREEIKETPFKVTLKADNIR-- 169
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
+ L + E + G A+ L FI + +Y K R + TS LS
Sbjct: 170 KENLFPKYEEQFAEMTCDLPILDSGEKTANTRLANFIKHDVADYDKARDFPELDKTSHLS 229
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
+L GE+SVR ++ + Q + A EG +F K + R++ + + P
Sbjct: 230 RYLRTGEISVRTIWQAL---QENEATEGRA-------IFEKELCWRDFYNMIYVSFPNQK 279
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
P+ + +F W + +FKAW+ G+TG+PLVDA MR+L TGW+H+R+R+V +SF K
Sbjct: 280 NEPIQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTK 339
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L + WR+G KYF L+D D S+ GWQ+ + T D + RI NP + KFDP G+
Sbjct: 340 DLLIDWRFGEKYFQQMLIDYDSASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGK 399
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
++R ++ ELA LP ++IH P E + G+ LG +YPFPIV
Sbjct: 400 FIREYVKELANLPDKFIHQPEKMSEIEQKEHGLLLGKDYPFPIV 443
>gi|121730224|ref|ZP_01682610.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae V52]
gi|147672153|ref|YP_001214921.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae O395]
gi|227119239|ref|YP_002821134.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395]
gi|262168985|ref|ZP_06036679.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC27]
gi|121628028|gb|EAX60578.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae V52]
gi|146314536|gb|ABQ19076.1| deoxyribodipyrimidine photolyase, cyclobutane pyrimidine
dimer-specific [Vibrio cholerae O395]
gi|227014689|gb|ACP10898.1| deoxyribodipyrimidine photolyase [Vibrio cholerae O395]
gi|262022684|gb|EEY41391.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC27]
Length = 469
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 143/452 (31%), Positives = 228/452 (50%), Gaps = 26/452 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFRRDLR DN AL A + +G V A++I PE+ ++ + + L+ L
Sbjct: 3 LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQE 62
Query: 67 LRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L +L L ++ D + ++ ++ K A Q+ N Y+ RD A++ L+ QG
Sbjct: 63 LAALNVPLFYQQVADFQAAAVAVSQLAKTLNAKQVLANRDYELDEQQRDQSAQQLLSEQG 122
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I +F+ + P V QG+ F F F L++ F P P++ R +
Sbjct: 123 ITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTL-FQP--PVIGKNR--PAALWNV 177
Query: 184 PSDT--LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
PS LV+ E + + W+ + L F + +Y + R TS
Sbjct: 178 PSALAELVWHPEQAFDYPRIDSTPWAADFETVRAQLREFCRERVQDYHQARDFPAQEGTS 237
Query: 242 FLSPHLHFGEVSVR----KVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
LSP+L G +S R +++H + ++S EG +A +L + RE+ +++
Sbjct: 238 SLSPYLAIGVLSARQCVARLYHESSMGELS---EGAQA-------WLSELIWREFYQHLV 287
Query: 298 FNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
P S R + W D F+ W +G+TGYP+VDA MR+L TGW+H+R+R+
Sbjct: 288 AIEPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRM 347
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+V+SF K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP +G
Sbjct: 348 IVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQG 407
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAP 448
KFDPNG+++RRW+PEL + + +IH PW P
Sbjct: 408 EKFDPNGDFIRRWVPELRSVSSAYIHQPWAYP 439
>gi|16802631|ref|NP_464116.1| hypothetical protein lmo0588 [Listeria monocytogenes EGD-e]
gi|386049515|ref|YP_005967506.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
R2-561]
gi|404283027|ref|YP_006683924.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2372]
gi|405757582|ref|YP_006686858.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2479]
gi|16409964|emb|CAC98667.1| lmo0588 [Listeria monocytogenes EGD-e]
gi|346423361|gb|AEO24886.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
R2-561]
gi|404232529|emb|CBY53932.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2372]
gi|404235464|emb|CBY56866.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2479]
Length = 467
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 139/464 (29%), Positives = 227/464 (48%), Gaps = 23/464 (4%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S++WFRRDLRV DN AL + ++ +F P + G S S++H
Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEDDLLLLFQVNP---AQFITGSPSHQAFFASVAHFKQ 58
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA-TQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ T+L+ + V L ++ + + +++FN RD AK Q I
Sbjct: 59 EVDK--TALLQIMFGEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFFDEQEI 116
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V++F+ L+ +V + + + F +++K + + P K D R
Sbjct: 117 EVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKK-----WREEIKETPFKVTLKADNIR-- 169
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
+ L + E + G A+ L FI + +Y K R + TS LS
Sbjct: 170 KENLFPKYEEQFAEMTCDLPILDSGEKTANTRLANFIKHDVADYDKARDFPELDKTSHLS 229
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
+L GE+SVR ++ + Q + A EG +F K + R++ + + P
Sbjct: 230 RYLRTGEISVRTIWQAL---QENEATEGRA-------IFEKELCWRDFYNMIYVSFPNQK 279
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
P+ + +F W + +FKAW++G+TG+PLVDA MR+L TGW+H+R+R+V +SF K
Sbjct: 280 NEPIQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTK 339
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L + WR+G KYF L+D D S+ GWQ+ + T D + RI NP + KFDP G+
Sbjct: 340 DLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGK 399
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
++R+++ ELA LP ++IH P E + G+ LG +YPFP++
Sbjct: 400 FIRKYVKELANLPDKFIHQPEKMSEIEQKEYGLLLGKDYPFPLI 443
>gi|194290487|ref|YP_002006394.1| deoxyribodipyrimidine photolyase (photoreactivation), fad-binding
[Cupriavidus taiwanensis LMG 19424]
gi|193224322|emb|CAQ70333.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Cupriavidus taiwanensis LMG 19424]
Length = 519
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 164/504 (32%), Positives = 260/504 (51%), Gaps = 37/504 (7%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVI-AVFIWAPE------EEGPYYPGRVSRWWLKHS 59
+VWFRRDLR D+ AL +R A + VF++ + G R+ +++ S
Sbjct: 23 GLVWFRRDLRATDHAALHYALRHCAQVWCVFVFDRDILEPLLARGLQADRRIE--FIRQS 80
Query: 60 LSHLDSSLRSLGTSLVT--KRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKE 117
L L +L + G L+ R+ ++ +L +A A +F NH Y+P + RD ++
Sbjct: 81 LVELAGTLAAAGGGLIVLHDRAQTAIPAL---ARALDAEAVFANHDYEPAANARDEAVRQ 137
Query: 118 ALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCL--SMPFD----PDAPLLP 171
AL AQ A+ +F ++E ++ + QG+PF+ F + L + PFD P P LP
Sbjct: 138 ALAAQACALFTFKDQAIFERDEILNGQGKPFSVFTPYKNAWLRAAEPFDLRPYPVEPYLP 197
Query: 172 PKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKN 231
R P T+ + SN LA P ++ +AL G + +Y +
Sbjct: 198 ALAPVPA-AYRLPVPTIA--QLGFRASN--LAEIAMPTGASGAQALFEEFTGRMGDYGRR 252
Query: 232 RRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLRE 291
R S+LS HL FG +S+R L R+ + G + +V +L + R+
Sbjct: 253 RDYPALRGPSYLSVHLRFGTISIRT---LARVAHEAMLRGGADSAGAAV--WLSELIWRD 307
Query: 292 YSRYMSFNHPY----SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWAT 347
+ + +HP + P +++ E YF AWR TGYPL+DA M ++ +
Sbjct: 308 FYFMILHHHPRVAAGAAFHPAYDAIRWQDGDTGERYFHAWRDAATGYPLIDAAMLQIRQS 367
Query: 348 GWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFD 407
G++H+R+R+V +SF VK L + WR G +YF D L D DL ++ GWQ+ + T D + +
Sbjct: 368 GYMHNRLRMVTASFLVKDLGVDWRRGEQYFADQLNDFDLAANNGGWQWAASTGCDAQPWF 427
Query: 408 RIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPI 467
RI NP + KFDP G ++R++LP+LA LP +++H PW APE+VL AG+ LG NYP P+
Sbjct: 428 RIFNPVTQSQKFDPQGRFIRKYLPQLAALPDKYLHAPWTAPEAVLAEAGVRLGDNYPRPL 487
Query: 468 VRIDAAK---CRLDEALSEMWQQE 488
V+ D A+ R EA+ ++ +QE
Sbjct: 488 VQHDVARQQTLRRYEAVKQVVKQE 511
>gi|82775975|ref|YP_402322.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae Sd197]
gi|309786366|ref|ZP_07680992.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 1617]
gi|81240123|gb|ABB60833.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae Sd197]
gi|308925760|gb|EFP71241.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 1617]
Length = 472
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 154/492 (31%), Positives = 242/492 (49%), Gaps = 59/492 (11%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLS---- 61
+VWFR+DLR+ DN ALAA R + V+A++I P R W H++S
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATP------------RQWAAHNMSPRQA 52
Query: 62 -HLDSSLRSLGTSLVTK------RSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLV 110
+++ L L +L K R D ++ +E++K A T LF+N+ Y+
Sbjct: 53 ELINAQLNGLQIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERA 112
Query: 111 RDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDP 165
RD + AL + + F+ ++ P V + + F F W K L MP
Sbjct: 113 RDVEVERAL--RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFQNAWLKRLREGMP--- 167
Query: 166 DAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPL 225
+ PK +SG + PS TL + +S ++ L+ A L F
Sbjct: 168 -ECVAAPKVRSSGSIKPAPSITLNYPRQSFDTAHFLVEE------KAAIAQLRQFCQNGA 220
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
EY + R + TS LS L G +S R+ H + +Q + G AG +++L
Sbjct: 221 GEYEQQRDFPAAEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLS 274
Query: 286 SIGLREYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMREL 344
+ RE+ R++ +P P + W + + +AW++G+TGYP+VDA MR+L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL 334
Query: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 404
+TGW+H+R+R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 405 AFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
+ RI NP +G KFD GE++R+WLPEL +P + +H PW E AG++L +YP
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWAEK----AGVKL--DYP 448
Query: 465 FPIVRIDAAKCR 476
PIV A+ +
Sbjct: 449 QPIVEHKEARVQ 460
>gi|89073732|ref|ZP_01160246.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34]
gi|89050507|gb|EAR55999.1| deoxyribodipyrimidine photolyase [Photobacterium sp. SKA34]
Length = 489
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 150/482 (31%), Positives = 224/482 (46%), Gaps = 33/482 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I+WFR DLRV DN AL + +G +IA+FI P + + V ++ L L
Sbjct: 12 IIWFRSDLRVVDNTALNHAIESGLPIIALFIATPMQWHQHNMAAVQVDFIHRRLQVLKQQ 71
Query: 67 LRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L L D SV + +V A +F N Y RD+ E L +
Sbjct: 72 LAKRNIPLQVIEVNDFSESVYLIEQVCIDYNAVHVFANKQYPINEHKRDNSVGELLAKKS 131
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSMPFDPDAPLLPPKRINSGDM 180
I F+ + + +P V G+ F F F W K S + P INS +
Sbjct: 132 IKFSIFDDNYILQPEMVLTRDGELFKVFTPFRNAWIKRFS------SSTCYPVTINSDIV 185
Query: 181 SRCPSDTLVFEDESEKGSNALLARA--WSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
+ L+ + K N + + W + L TF Y +NR
Sbjct: 186 TSGVVSKLLSDSSQIKAFNYPIIDSVLWPVDEETIAQRLETFCETKAETYHQNRDFPAID 245
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LSP+L G +S R+ H + Q + N D+ +L I RE+ ++
Sbjct: 246 GTSCLSPYLAIGALSARQCLHQL---QQYFPNAFEINKDDGAFTWLNEIVWREFYGHLLH 302
Query: 299 NHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
+P S +P +F W DE KAW++G+TG+P+VDAGMR+L ATGW+H+R+R++
Sbjct: 303 RYPELSKHQPFQKFTQFVKWKDDEALLKAWQEGKTGFPIVDAGMRQLRATGWMHNRLRMI 362
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
+SF K L WR G ++F L+D D S+ GWQ+ + T D + + R+ NP +G
Sbjct: 363 TASFLTKDLLCDWRVGEQWFMQHLIDGDFSSNNGGWQWAASTGTDAQPYFRVFNPTLQGQ 422
Query: 418 KFDPNGEYVRRWLPELARLPTEWIH--HPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
+FDP G+++R W+ EL +P ++IH H W + ES+ NYP PIV D +
Sbjct: 423 RFDPKGDFIRTWVKELEHVPDKYIHTPHQWASEESL----------NYPLPIV--DHKEA 470
Query: 476 RL 477
RL
Sbjct: 471 RL 472
>gi|1827916|pdb|1DNP|A Chain A, Structure Of Deoxyribodipyrimidine Photolyase
gi|1827917|pdb|1DNP|B Chain B, Structure Of Deoxyribodipyrimidine Photolyase
Length = 471
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 154/481 (32%), Positives = 238/481 (49%), Gaps = 37/481 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 4 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 63
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 64 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 120
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 121 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 176
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 177 SGSIEPSPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 230
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 231 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLNELIWREFYRHL 284
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
HP RP + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 285 ITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 344
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 345 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 404
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++R+WLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 405 GEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGVTL--DYPQPIVEHKEARV 458
Query: 476 R 476
+
Sbjct: 459 Q 459
>gi|257095136|ref|YP_003168777.1| Deoxyribodipyrimidine photo-lyase [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047660|gb|ACV36848.1| Deoxyribodipyrimidine photo-lyase [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 482
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 151/478 (31%), Positives = 230/478 (48%), Gaps = 17/478 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPE-EEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFRRDLR D+ AL +R G V F++ E + + +++ SL LD+
Sbjct: 5 LVWFRRDLRDSDHAALCEALRRGRRVFCAFVFDREILDALDHEADRRVEFIRESLVELDA 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
+LR+ G +L+ + + + ++ + G +F N Y+P + RD AL A GIA
Sbjct: 65 ALRTRGGALLVRHGW-ATREIPDLARGLGVAAVFVNRDYEPGAKQRDAAVSAALKADGIA 123
Query: 126 VRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS 185
SF + + +V G+P+ F + L D D P + SG ++ P+
Sbjct: 124 FESFKDQAILDGDEVLSQAGRPYTVFTPYRNAWLKRLTDDD---WYPHQAGSGVLAATPA 180
Query: 186 DTLVFEDESEKGSNALLAR-AWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
V S L R PG + L F+ G + Y + R S+LS
Sbjct: 181 ADGVPPLAKIGFSGTDLRRLGIVPGMRGGRQLLADFL-GRIGRYRQQRDFPAVKGVSYLS 239
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
HL FG VSVR + + A + G E +L + R++ + P+
Sbjct: 240 VHLRFGTVSVRDLV------AKAIAAGAFREGGEGAATWLSELVWRDFYFMILDRFPHVV 293
Query: 305 ERPLLGHLKFFSWVVD---EGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
ER +W E F AW GRTGYPLVDA MR+L ++G++H+R+R++V+SF
Sbjct: 294 ERAFKPAYDLINWQAGAQAEDAFSAWCAGRTGYPLVDAAMRQLNSSGYMHNRLRMLVASF 353
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L + WR G +YF L D DL ++ GWQ+ + T D + + RI NP + +FDP
Sbjct: 354 LTKDLGIDWRLGERYFARQLNDYDLSANNGGWQWAASTGCDAQPYFRIFNPVTQSERFDP 413
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
G+++RR+LPELA +P +IH PW A G+ +G P P+V D A+ R E
Sbjct: 414 AGKFIRRYLPELANVPDRFIHAPWRMSSVEQSACGVLIGRTTPAPLVDHDQARQRTLE 471
>gi|425070372|ref|ZP_18473485.1| hypothetical protein HMPREF1311_03580 [Proteus mirabilis WGLW6]
gi|404595155|gb|EKA95708.1| hypothetical protein HMPREF1311_03580 [Proteus mirabilis WGLW6]
Length = 476
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 153/485 (31%), Positives = 229/485 (47%), Gaps = 29/485 (5%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPAL--AAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKH 58
M +VWFR DLRV DN AL A V A+F P + ++ + ++
Sbjct: 1 MHSAPVHLVWFRHDLRVTDNKALFYACQNTQAQVHAIFTVTPAQWKAHHMALSQQAFIHD 60
Query: 59 SLSHLDSSLRSLG---TSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRA 115
+L +L SL L T +++ D+ S+++ + T LFFNH Y RD +
Sbjct: 61 ALLNLSHSLAKLNIPLTLIISDTYADAAQSIVDYCQQHQVTALFFNHQYALNEQNRDKKV 120
Query: 116 KEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI 175
E L A V ++ ++ P +V QG+ + F F L + D LPP I
Sbjct: 121 ME-LLAHNTTVYCYHDNVFVPPGNVVTQQGEMYKVFTPFRTAFLRLFLSQDNASLPPPEI 179
Query: 176 NSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
+ + P +F + + A + L F +I Y+K R
Sbjct: 180 RAHQKAVSPLSAPLFALPISS------TKMFPASEQAALQRLKQFCYERVIHYAKWRDIP 233
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
TS LSP+L G VSVR+ F+ R+ Q + + S ++ + RE+ ++
Sbjct: 234 AIDGTSKLSPYLAIGLVSVRQCFN--RLYQTE--PDFLENNHSSAFVWFNELVWREFYQH 289
Query: 296 MSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
+ +P S + + W D+ F AW QG TG+P++DA MR+L TGW+H+R+
Sbjct: 290 LIVANPSLSKQIAFQPWTENIRWRNDQTEFTAWTQGLTGFPIIDAAMRQLNQTGWMHNRL 349
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R++ +SF VK L + WRWG YF L+D D S+ GWQ+ + T D + RI NP
Sbjct: 350 RMLTASFLVKDLLIDWRWGENYFMSQLIDGDFASNNGGWQWAASTGTDAVPYFRIFNPTT 409
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGS--NYPFPIVRIDA 472
+G KFDP+GE++R WLPELA +P IH P I+ G +YP PIV D
Sbjct: 410 QGRKFDPDGEFIRHWLPELADVPDRDIHTP--------SEWAIKTGHYLDYPQPIV--DH 459
Query: 473 AKCRL 477
AK R+
Sbjct: 460 AKARV 464
>gi|358638826|dbj|BAL26123.1| deoxyribodipyrimidine photo-lyase [Azoarcus sp. KH32C]
Length = 480
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 150/492 (30%), Positives = 232/492 (47%), Gaps = 46/492 (9%)
Query: 5 GCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRW--WLKHSLSH 62
++VWFRRDLR D+ AL +R A + E P R R ++ S+
Sbjct: 3 AAALVWFRRDLRCFDHAALHHALRRFARVHCVFVFDREILDALPRREDRRIEFIWRSIRE 62
Query: 63 LDSSLRSL-------GTSLVTK--RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDH 113
LD+ L L G L+ + R+ ++V L G +F N Y+P ++ RD
Sbjct: 63 LDAELDRLSRQAGGAGAGLIVRHARADEAVPQL---ASELGVAAVFANRDYEPAAIARDR 119
Query: 114 RAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS---------MPFD 164
R + L GIA F +++E ++ G P++ F + L+ P
Sbjct: 120 RVAQRLVEAGIAFEDFRDQVIFERDELLTQAGAPYSVFTPYKNAWLARFDSARMEAFPIA 179
Query: 165 PDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGP 224
A L PK D R P + + G L A G S L F+
Sbjct: 180 EAAAGLAPK----ADGERIPELAEIGFLPTNLGQLRLPA-----GMSGGRALLGDFVR-R 229
Query: 225 LIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFL 284
+ +Y++ R S+LS HL FG +S+R+ + ++W G +L
Sbjct: 230 IGDYAEARDYPSRKGVSYLSTHLRFGTLSIRE------LASLAWTE-----GSAGAQTWL 278
Query: 285 KSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMREL 344
+ RE+ + + ++HP + W F AW +GRTGYPLVDA MR+L
Sbjct: 279 SELIWREFYQMILYHHPRVVDACFRPEYDRIVWDDAPELFAAWCEGRTGYPLVDAAMRQL 338
Query: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 404
TG++H+R+R+V +SF K L + WR G +YF L D DL ++ GWQ+ + T D +
Sbjct: 339 NGTGYMHNRLRMVAASFLTKDLGIDWRRGERYFAAQLNDYDLAANNGGWQWAASTGCDAQ 398
Query: 405 AFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
+ RI NP + +FDP+G ++RR++PELAR+ + +IH PW PE+ A G+ +G +YP
Sbjct: 399 PYFRIFNPVTQSERFDPDGAFIRRYVPELARVASRYIHAPWKMPEAEQAACGVRIGRDYP 458
Query: 465 FPIVRIDAAKCR 476
P+V D A+ R
Sbjct: 459 APVV--DHAQAR 468
>gi|124265897|ref|YP_001019901.1| deoxyribodipyrimidine photo-lyase type I [Methylibium
petroleiphilum PM1]
gi|124258672|gb|ABM93666.1| Deoxyribodipyrimidine photo-lyase type I [Methylibium
petroleiphilum PM1]
Length = 497
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 154/491 (31%), Positives = 246/491 (50%), Gaps = 36/491 (7%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAV-FIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
++VW RRDLR D+ AL +RA + V F++ E P +++ SL LD
Sbjct: 11 AALVWCRRDLRAHDHAALYHALRAARRVWVAFVFDTEILDPLPRTDRRVEFIRDSLVDLD 70
Query: 65 SSLRSLGTSLVTK------RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEA 118
+ L +LG S T+ R + + + A ++ N Y+P ++ RD + + A
Sbjct: 71 AQLHTLGRSHGTEGVGLIVRHGRARDEIPRLAAALHVQAVYANTDYEPAAVARDAQVRGA 130
Query: 119 LTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL------SMPFDPDAPL 169
L GIA ++++ +V G P+ F + W K L + P A
Sbjct: 131 LAQTGIAFHPAKDQVVFDTDEVLTGAGTPYGVFTPYKNAWLKKLEPFYLQAYPVGRHAGA 190
Query: 170 LPPKRINSGDMSRCPSDTLV-FEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEY 228
L P+ +G+ + P+ + FE + L A +PG + L F + + Y
Sbjct: 191 LAPR--PAGEAAGVPTLAAIGFEPTN------LAALKLAPGTAGGRALLEDFGDERIDRY 242
Query: 229 SKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIG 288
+ R S+LS HL FG +S+R+ + +++W + +AG ++L +
Sbjct: 243 DQTRDFPAVKGPSYLSVHLRFGTLSIRE------LARLAW--DRARAGSRGAEVWLSELI 294
Query: 289 LREYSRYMSFNHPYSHER---PLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELW 345
R++ + +HP ER P +K+ + F AW +GRTGYPLVDA M ++
Sbjct: 295 WRDFYHQVLHHHPQVVERSFKPEYDKIKWEHGKHADALFAAWCEGRTGYPLVDAAMLQIN 354
Query: 346 ATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRA 405
TG++H+R+R+VV+SF K L L WR G +YF + L D DL ++ GWQ+ S + D +
Sbjct: 355 QTGYMHNRLRMVVASFLCKDLGLDWRRGERYFAEKLNDYDLAANNGGWQWASSSGCDAQP 414
Query: 406 FDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPF 465
+ RI NP + KFD G+++RR+LP+LA LP +H PW+A L AAG+ LG +YP
Sbjct: 415 YFRIFNPVSQSQKFDAQGKFIRRYLPQLAALPDAALHAPWDAKPLDLVAAGLVLGRDYPE 474
Query: 466 PIVRIDAAKCR 476
PIVR + A+ R
Sbjct: 475 PIVRHELARER 485
>gi|425421356|ref|ZP_18802564.1| deoxyribodipyrimidine photolyase [Escherichia coli 0.1288]
gi|408347197|gb|EKJ61427.1| deoxyribodipyrimidine photolyase [Escherichia coli 0.1288]
Length = 472
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 241/488 (49%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F +Y + R
Sbjct: 178 SGSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGDYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P RP + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW Q AG++L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVKL--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|386618155|ref|YP_006137735.1| Deoxyribodipyrimidine photolyase [Escherichia coli NA114]
gi|387828689|ref|YP_003348626.1| deoxyribodipyrimidine photolyase [Escherichia coli SE15]
gi|432420783|ref|ZP_19663339.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE178]
gi|432498919|ref|ZP_19740696.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE216]
gi|432557689|ref|ZP_19794379.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE49]
gi|432693459|ref|ZP_19928671.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE162]
gi|432709505|ref|ZP_19944572.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE6]
gi|432917851|ref|ZP_20122334.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE173]
gi|432925157|ref|ZP_20127248.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE175]
gi|432980177|ref|ZP_20168956.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE211]
gi|433095601|ref|ZP_20281813.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE139]
gi|433104810|ref|ZP_20290830.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE148]
gi|281177846|dbj|BAI54176.1| deoxyribodipyrimidine photolyase [Escherichia coli SE15]
gi|333968656|gb|AEG35461.1| Deoxyribodipyrimidine photolyase [Escherichia coli NA114]
gi|430947255|gb|ELC66962.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE178]
gi|431031820|gb|ELD44553.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE216]
gi|431094124|gb|ELD99774.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE49]
gi|431236696|gb|ELF31901.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE162]
gi|431251674|gb|ELF45681.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE6]
gi|431446725|gb|ELH27469.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE173]
gi|431448629|gb|ELH29344.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE175]
gi|431494172|gb|ELH73762.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE211]
gi|431619115|gb|ELI88040.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE139]
gi|431634109|gb|ELJ02365.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE148]
Length = 472
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 155/488 (31%), Positives = 239/488 (48%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLNALQN 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ R D ++ +E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLF-REVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGAIDPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P RP + W + + KAW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++R+WLPEL +P + +H PW E G+ L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRQWLPELRDVPGKAVHEPWKWAEKT----GVTL--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|239986566|ref|ZP_04707230.1| deoxyribodipyrimidine photo-lyase [Streptomyces roseosporus NRRL
11379]
Length = 451
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 155/481 (32%), Positives = 237/481 (49%), Gaps = 42/481 (8%)
Query: 8 IVWFRRDLRVEDNPALAAGVR-AGAVIAVFIW--APEEEGPYYPGRVSRWWLKHSLSHLD 64
+V F DLR+ D+P L A +R A V+ +F+ A G P R++ +L L+ LD
Sbjct: 1 MVLFTSDLRLHDHPVLRAALRDADEVVPLFVRDDAVHRAGFDAPNRLA--FLADCLADLD 58
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ LR G L+ +R + + VV+ TGA + + R+ R +EAL G
Sbjct: 59 TGLRDRGGRLIVRRGG-TAREVKRVVEQTGADSVHIAAGVSGYAAQREERIREALAGTGC 117
Query: 125 AVRSFNADLL-YEPWDVNDAQGQP-FATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
+R +A + P V G+ FA F ++ + + L P+ + D
Sbjct: 118 ELRVHDAVVTALAPGRVVPTGGKDHFAVFTPYFRRWEAEGVR--GTLAAPRTVRVPDG-- 173
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
D L D + KG + LAR G K +T++++GP+ Y TS
Sbjct: 174 VSGDALPDRD-AVKGVSPGLARG---GEEAGRKLVTSWLHGPMAAYEDGHDDLAGDATSR 229
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP- 301
LSPHLHFG VS ++ AN + G F++ + R++ + P
Sbjct: 230 LSPHLHFGTVSAAEL-----------ANRAREKGGPGGEAFVRQLAWRDFHHQVLAARPD 278
Query: 302 --YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
+S RP + W DE +AW+ GRTGYPLVDA MR+L GW+H+R R++ +
Sbjct: 279 ASWSDYRP-----RHDRWRSDEDEIEAWKSGRTGYPLVDAAMRQLAHEGWMHNRGRMLTA 333
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF K L + WR G ++F D L+D D+ ++ L WQ+++GT D R +R+ NP +G +F
Sbjct: 334 SFLTKTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPVIQGKRF 392
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP+G YVRRW+PELA + +H PW L AG+ +YP P+V + A+ R +
Sbjct: 393 DPDGAYVRRWVPELAEVEGPAVHEPWKL--EGLDRAGV----DYPDPVVDLAEARSRFER 446
Query: 480 A 480
A
Sbjct: 447 A 447
>gi|262403201|ref|ZP_06079761.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC586]
gi|262350700|gb|EEY99833.1| deoxyribodipyrimidine photolyase [Vibrio sp. RC586]
Length = 469
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 147/473 (31%), Positives = 228/473 (48%), Gaps = 36/473 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VW RRDLR DN AL+A + +G V+AV++ P++ ++ + ++ L L
Sbjct: 3 LVWLRRDLRCVDNSALSAAIASGDPVVAVYLATPKQWQQHHLAPIQADFIWRRLGALQQE 62
Query: 67 LRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L L L+ ++ D + + ++ K A Q+F N Y+ RD R ++ L Q
Sbjct: 63 LAKLNVPLLYRQVADFHDAAEVICQLAKTLKAKQVFANRDYELDEQQRDLRTEQRLAEQQ 122
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR- 182
IA +F+ + P V QG+ F F F LS+ PP + + +
Sbjct: 123 IAWWAFDDKCILPPGSVRTQQGEFFKVFTPFKRAWLSL-------FQPPTIVKNSPALKG 175
Query: 183 -CPSDTL--VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSAT 239
PS+ ++ E + + W + L F + +Y + R
Sbjct: 176 IIPSELTDWIWNSEQAFDYERVDSSQWPVEFETIRNQLRDFCRERVQDYHQWRDFPARTG 235
Query: 240 TSFLSPHLHFGEVSVRK-VFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LSP+L G +S R+ V L R + EG ++L + RE+ +++
Sbjct: 236 TSSLSPYLAIGALSARQCVARLYRESAMGVLGEG-------AQVWLSELIWREFYQHLVA 288
Query: 299 NHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
P S R W D F+ W +G+TGYP+VDA MR+L TGW+H+R+R++
Sbjct: 289 REPNLSKSRDFHEWGSHLEWWNDHEKFQRWCEGQTGYPIVDAAMRQLNQTGWMHNRLRMI 348
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V+SF K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP +G
Sbjct: 349 VASFLTKDLHIDWRWGERYFMSQLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGE 408
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAP--ESVLQAAGIELGSNYPFPIV 468
KFDPNG+++RRW+PEL L + +IH PW P SVL YP P+V
Sbjct: 409 KFDPNGDFIRRWVPELRGLSSAYIHQPWTYPAVNSVL----------YPAPLV 451
>gi|417128682|ref|ZP_11975469.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0246]
gi|386143638|gb|EIG90114.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 97.0246]
Length = 472
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 158/499 (31%), Positives = 243/499 (48%), Gaps = 59/499 (11%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLS---- 61
+VWFR+DLR+ DN ALAA R + V+A++I P R W H++S
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATP------------RQWATHNMSPRQA 52
Query: 62 -HLDSSLRSLGTSLVTK------RSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLV 110
+++ L L +L K R D ++ +E++K A T LF+N+ Y+
Sbjct: 53 ELINAQLNGLQIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERA 112
Query: 111 RDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDP 165
RD + AL + + F+ ++ P V + + F F W K L MP
Sbjct: 113 RDVDVERAL--RNVLCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP--- 167
Query: 166 DAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPL 225
+ PK +SG + PS TL + +S ++ + A L F
Sbjct: 168 -ECVAAPKVRSSGSIEPSPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGA 220
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
EY + R TS LS L G +S R+ H + +Q + G AG +++L
Sbjct: 221 GEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLS 274
Query: 286 SIGLREYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMREL 344
+ RE+ R++ +P RP + W + + +AW++G+TGYP+VDA MR+L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQL 334
Query: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 404
+TGW+H+R+R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 405 AFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
+ RI NP +G KFD GE++RRWLPEL +P + +H PW Q AG++L +YP
Sbjct: 395 PYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVKL--DYP 448
Query: 465 FPIVRIDAAKCRLDEALSE 483
PIV A+ R A E
Sbjct: 449 QPIVDHKEARLRTLAAYEE 467
>gi|417665850|ref|ZP_12315412.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_O31]
gi|422775474|ref|ZP_16829130.1| DNA photolyase [Escherichia coli H120]
gi|433091036|ref|ZP_20277334.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE138]
gi|323947030|gb|EGB43044.1| DNA photolyase [Escherichia coli H120]
gi|397786401|gb|EJK97237.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_O31]
gi|431614035|gb|ELI83199.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE138]
Length = 472
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 241/488 (49%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F +Y + R
Sbjct: 178 SGSIEPSPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGDYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P RP + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW Q AG++L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVKL--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|47096881|ref|ZP_00234460.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 1/2a
F6854]
gi|254911267|ref|ZP_05261279.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J2818]
gi|254935594|ref|ZP_05267291.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes F6900]
gi|386046246|ref|YP_005964578.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J0161]
gi|47014746|gb|EAL05700.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype
1/2a str. F6854]
gi|258608175|gb|EEW20783.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes F6900]
gi|293589198|gb|EFF97532.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J2818]
gi|345533237|gb|AEO02678.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J0161]
Length = 467
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 139/464 (29%), Positives = 226/464 (48%), Gaps = 23/464 (4%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S++WFRRDLRV DN AL + ++ +F P + G S S++H
Sbjct: 2 TSVMWFRRDLRVSDNKALYHACKEDDLLLLFQVNP---AQFITGSPSHQAFFASVAHFKQ 58
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA-TQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ T+L+ + V L ++ + + +++FN RD AK Q I
Sbjct: 59 EVDK--TALLQIMFGEPVECLKQLKETLPSWDKVYFNRDETGYGAERDEAAKTFFDEQEI 116
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V++F+ L+ +V + + + F +++K + + P K D R
Sbjct: 117 EVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKK-----WREEIKETPFKVTLKADNIR-- 169
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
+ L + E + G A+ L FI + +Y K R + TS LS
Sbjct: 170 KENLFPKYEEQFAEMTCDLPILDSGEKTANTRLANFIKHDVADYDKARDFPELDKTSHLS 229
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
+L GE+SVR ++ + Q + A EG +F K + R++ + + P
Sbjct: 230 RYLRTGEISVRTIWQAL---QENEATEGRA-------IFEKELCWRDFYNMIYVSFPNQK 279
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
P+ + +F W + +FKAW+ G+TG+PLVDA MR+L TGW+H+R+R+V +SF K
Sbjct: 280 NEPIQENYRFIEWENNREFFKAWQDGKTGFPLVDAAMRQLKETGWMHNRLRMVTASFLTK 339
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L + WR+G KYF L+D D S+ GWQ+ + T D + RI NP + KFDP G+
Sbjct: 340 DLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTGK 399
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
++R+++ ELA LP ++IH P E + G+ LG +YPFP++
Sbjct: 400 FIRKYVKELANLPDKYIHQPEKMSEIEQKEYGLLLGKDYPFPLI 443
>gi|186896329|ref|YP_001873441.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis
PB1/+]
gi|186699355|gb|ACC89984.1| DNA photolyase FAD-binding [Yersinia pseudotuberculosis PB1/+]
Length = 487
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 150/479 (31%), Positives = 231/479 (48%), Gaps = 30/479 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR DLRV DN AL A + +VIAVFI P + + +L+ +L HL +
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQHLQA 64
Query: 66 SLRSLGTSLVTKRSTDSVSS---LLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L + G L + D +S L++ + LF++ Y+ +RD L+ +
Sbjct: 65 ALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQLSGR 124
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLP-PKRINSGDMS 181
I +SF+ +L P V + + F F + D +P PK ++ +
Sbjct: 125 AITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKTRHAPPVL 184
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
P L F+ + + L G A + L F + +Y + R TS
Sbjct: 185 LSP---LPFDYPQQSVDSQLF----PAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTS 237
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWAN--EGNKAGDESVNLFLKSIGLREYSRYMSFN 299
LSP+L G +S R+ F+ + WA E ++ D +L + RE+ R++
Sbjct: 238 CLSPYLVLGVLSPRQCFNRL------WAESPEMLESADSGAFTWLNELIWREFYRHLLVA 291
Query: 300 HP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
+P P +G W E KAW+QG+TGYP+VDA MR++ TGW+H+R+R++
Sbjct: 292 YPRLCQHHPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMIS 351
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +G +
Sbjct: 352 ASFLVKDLLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGER 411
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
FD +G ++RRWLPELA +P IH PW E Q +YP P+V D + RL
Sbjct: 412 FDKDGVFIRRWLPELAAVPDSDIHQPWRWAERQQQHL------DYPVPLV--DHKQARL 462
>gi|171060633|ref|YP_001792982.1| deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6]
gi|170778078|gb|ACB36217.1| Deoxyribodipyrimidine photo-lyase [Leptothrix cholodnii SP-6]
Length = 511
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 154/485 (31%), Positives = 237/485 (48%), Gaps = 49/485 (10%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPE--EEGPYYPGRVSRWWLKHSLSH 62
++VW RRDLR++D+ AL +R A V FI+ + P RV ++ H +
Sbjct: 32 AALVWLRRDLRLDDHAALHHALRSAKKVWCAFIFDTTILDALPRADRRVE--FIHHGIVE 89
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
LD LR+ G+ L+ R D + + + A G + N Y+P ++ RD + + AL
Sbjct: 90 LDGLLRAHGSGLIV-RHGDPLQEIPAIAGALGVQAVHINRDYEPAAVARDAQVRGALAHA 148
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSMPFDPDAP-------LLP- 171
GIA+ S +++E ++ G PF+ F + W K L + P L P
Sbjct: 149 GIALHSHKDQVIFETDEILTMAGSPFSVFTPYKNAWLKKLDGYYLRAYPVQRHIGALAPV 208
Query: 172 PKRINSG-----DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLI 226
P ++ G D+ P+D +A PG S L F+ +
Sbjct: 209 PAALDRGVPTLNDLDFLPTD---------------MAARLHPGASGGATLLLDFLE-RID 252
Query: 227 EYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKS 286
Y+ R S+LS HL FG VS+R++ L A+E G ++L
Sbjct: 253 RYADTRDFPAIKGPSYLSVHLRFGTVSIRQLARL--------AHERMVGGSRGAEVWLSE 304
Query: 287 IGLREYSRYMSFNHP--YSH-ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRE 343
+ R++ + +HP +H +P L++ E F AW +GRTGYP++DA M +
Sbjct: 305 LIWRDFYHQILHHHPRVVTHCYKPEYEALRWEHGKHAEQLFAAWCEGRTGYPIIDAAMLQ 364
Query: 344 LWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDG 403
L TG++H+R+R+VV+SF K L + WR G YF L D DL ++ GWQ+ + T D
Sbjct: 365 LNRTGYMHNRLRMVVASFLTKDLGIDWRRGEAYFALQLNDYDLAANNGGWQWAASTGCDA 424
Query: 404 RAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNY 463
+ + RI NP + +FD G ++RR+LP+LA L IH PW A LQAAG++LG +Y
Sbjct: 425 QPYFRIFNPISQSLRFDAEGRFIRRYLPQLADLSRAAIHAPWQAKPLELQAAGVKLGRDY 484
Query: 464 PFPIV 468
P P+V
Sbjct: 485 PMPVV 489
>gi|421782185|ref|ZP_16218644.1| deoxyribodipyrimidine photolyase [Serratia plymuthica A30]
gi|407755741|gb|EKF65865.1| deoxyribodipyrimidine photolyase [Serratia plymuthica A30]
Length = 476
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 150/478 (31%), Positives = 230/478 (48%), Gaps = 26/478 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VW R DLR+ DN AL A A V+AVFI P + + ++ +L +
Sbjct: 5 LVWLRNDLRITDNKALHAACCDPAARVLAVFIATPGQWRQHEMAPCQAAFIHANLLQVQQ 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L G LV + D +V L+ LF+N Y+ L RD +A+ L+ Q
Sbjct: 65 ALADRGIPLVCHQCDDFSAAVDWLVAYCAQERVNALFYNRQYEINELKRDQQAQRRLSGQ 124
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLP-PKRINSGDMS 181
I +SF+ LL P V G+ + + F + + + D LP PKR G +
Sbjct: 125 VI-CQSFDDSLLLPPGSVQTGGGEMYKIYTPFRKAFIQRLTESDVRSLPAPKRREGGALP 183
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
+ + E G++ + G A + L F + +Y + R A TS
Sbjct: 184 VSVAPAAFDYPQVEAGAD------FPAGEDAALQRLRAFCREQVQDYLQQRDFPAIAGTS 237
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+L G +S R+ F+ +R + + + D +L + RE+ R++ +P
Sbjct: 238 SLSPYLAIGVLSPRQCFNRLRAE----CPQVLENSDSGAFGWLNELIWREFYRHLMVAYP 293
Query: 302 -YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
RP + W D+ AW++G TGYP+VDA MR+L TGW+H+R+R++ +S
Sbjct: 294 ALCRHRPFIEWTDRVRWRNDDALLLAWQKGATGYPIVDAAMRQLNKTGWMHNRLRMISAS 353
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F VK L + WR G +YF LLD DL ++ GWQ+ + T D + RI NP +G +FD
Sbjct: 354 FLVKDLLIDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFD 413
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
P G ++R+WLPELA +P +H P L A + +YP PIV D + RL+
Sbjct: 414 PQGTFIRKWLPELADVPDNALHQP------HLWAEKQQRTLDYPVPIV--DHKQARLE 463
>gi|260769655|ref|ZP_05878588.1| deoxyribodipyrimidine photolyase [Vibrio furnissii CIP 102972]
gi|260614993|gb|EEX40179.1| deoxyribodipyrimidine photolyase [Vibrio furnissii CIP 102972]
Length = 475
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 148/474 (31%), Positives = 224/474 (47%), Gaps = 36/474 (7%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VW RRDLR DN AL + + AV A+F+ P + + + ++ L L +
Sbjct: 2 KLVWLRRDLRSVDNTALNEALASDEAVCALFVATPTQWQQHDMAPMQADFIHRRLFVLQT 61
Query: 66 SLRSLGTSLVTKRS---TDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L +L L+ + T++V ++ EV A A Q+ N Y+ RD +A E L Q
Sbjct: 62 ELAALNVPLLYREVATFTEAVDAVTEVASALHANQVLANRDYELNEQQRDAQAAERLHQQ 121
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
GI +SF+ + P + + QG F F F L+ P RI + ++
Sbjct: 122 GIEWQSFDDKCVMPPGSLRNKQGDYFKVFTPFKRAWLTQ--------FSPPRIQASRAAK 173
Query: 183 CPS-----DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
S +L++ + + + AW + + L F L +Y + R
Sbjct: 174 PWSLPEALQSLLWCEAQPFTHPRVSSDAWPVDFDTIRRRLRAFCQEQLDDYKQQRDFPAQ 233
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLRE-YSRYM 296
TS LSP+L G +S R+ V +A A + +L + RE Y +
Sbjct: 234 DGTSSLSPYLAIGALSPRQCIARV------YAESAMGALSDGAQTWLSELIWREFYQHLL 287
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
+F S + L +W DE F W +G TGYP+VDA MR+L TGW+H+R+R+
Sbjct: 288 TFEPKLSKSKDFLAWGARLTWWTDEAKFARWCEGNTGYPIVDAAMRQLNQTGWMHNRLRM 347
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+V+SF K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP +G
Sbjct: 348 IVASFLTKDLHIDWRWGERYFMQHLVDGDYAANNGGWQWCASTGCDGQPYFRIFNPTTQG 407
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHP--WNAPESVLQAAGIELGSNYPFPIV 468
KFDP G ++R+W+PELA +P IH P W S+L YP PIV
Sbjct: 408 EKFDPQGRFIRQWVPELATVPEAHIHAPSNWGGVNSLL----------YPQPIV 451
>gi|317491170|ref|ZP_07949606.1| DNA photolyase [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920717|gb|EFV42040.1| DNA photolyase [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 476
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 141/443 (31%), Positives = 217/443 (48%), Gaps = 17/443 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR DLR+ DN AL A + VIAV+I PE+ + ++ +L L
Sbjct: 6 VVWFRNDLRITDNRALHAACQDPQAKVIAVYIATPEQWKQHDMAPRQAAFIHQNLQCLVH 65
Query: 66 SLRSLGTSLVTKRSTDSVSS---LLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L L + TD +S L++ + T LF+N Y+ RD E L A
Sbjct: 66 ALAGKNIPLFYHQCTDFTASAKWLVDFCQKNEVTDLFYNRQYELNERRRDDAVTE-LLAG 124
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
+ SF+ LL P V G+ + F F L D LP +
Sbjct: 125 VCGIHSFDDALLLPPGSVVTGSGEMYKVFTPFRNAFLQRLTHSDVRSLPAPKTRE---QA 181
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
C + D S++G +++L A G A + L F + +Y++ R TS
Sbjct: 182 CEMSEIKPFDYSQQGLDSVLFPA---GEEAALQRLRVFCREHVQDYAQQRDIPAVDGTSV 238
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP- 301
LSP+L G +S R+ + + ++ + + G+ ++L + RE+ R++ HP
Sbjct: 239 LSPYLAVGVLSPRQCLN----RLLAECPDTLEDGESGAFVWLNELVWREFYRHLLVAHPK 294
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+P + W D + AW+QG TGYP+VDA MR+L TGW+H+R+R++V+SF
Sbjct: 295 LCRHKPFIAWTDHVHWSGDIEHLTAWQQGETGYPIVDAAMRQLNHTGWMHNRLRMIVASF 354
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L + WR G +YF L+D DL ++ GWQ+ + + D + RI NP +G +FD
Sbjct: 355 LVKDLLINWRAGERYFMSQLIDGDLAANNGGWQWAASSGTDAAPYFRIFNPTTQGERFDK 414
Query: 422 NGEYVRRWLPELARLPTEWIHHP 444
G+++RRWLPELA +P IHHP
Sbjct: 415 KGDFIRRWLPELADVPDSDIHHP 437
>gi|62910844|gb|AAY21157.1| deoxyribopyrimidine photolyase [Prochloron didemni]
Length = 475
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 136/443 (30%), Positives = 223/443 (50%), Gaps = 20/443 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPE--EEGPYYPGRVSRWWLKHSLSHLD 64
+ W RRDLR+ DN LAA + + ++ +F P P RV+ ++ L L
Sbjct: 6 LFWHRRDLRISDNMGLAAARKQSSKIVGLFCLDPNILNSNEVAPARVT--YMLGCLQELK 63
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
S +G+ L+ R + + ++ ++ A T +F++ +P + RD + ++ L QGI
Sbjct: 64 ESYSKIGSQLLIVRG-EPIEAIPQLAVALQVTGVFWHKDGEPYARERDGKVEQELLKQGI 122
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
AV ++ LL+ P D+ G+P+ + FW+ P A L + + + +
Sbjct: 123 AVTNYWDQLLHPPEDILTQSGKPYTVYTPFWKNWSQKPKLEVAEKLDRIQGLTAEEIKIA 182
Query: 185 SDTLVFEDESEKGSNALLARAW------SPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
+T V + K L W +PG + A + L F + +Y + R
Sbjct: 183 QETGVVSLPTGKD----LGYYWDGELILTPGETAAREQLEEFSERAIAQYQEQRNFPAVE 238
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LSP L FG + +R V+ + +E +A E+ + K + RE+ ++ +
Sbjct: 239 GTSLLSPALRFGVIGIRTVWQATLEATKNSYSEEVRANIET---WQKELAWREFYQHALY 295
Query: 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
+ P P K F W + +F+AW +G+TGYP+VDA MR+L TGW+H+R R++V
Sbjct: 296 HFPQLTVEPYRQQFKDFPWDNNPEHFQAWCEGKTGYPMVDAAMRQLNETGWMHNRCRMIV 355
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF K L + W+WG +YF L D DL S+ GWQ+ + D + RI NP + K
Sbjct: 356 ASFLTKDLIINWQWGEQYFMQKLCDGDLASNNGGWQWSASCGMDPKPL-RIFNPASQAKK 414
Query: 419 FDPNGEYVRRWLPELARLPTEWI 441
FDP GEY+R+WLPEL+ + TE++
Sbjct: 415 FDPEGEYIRQWLPELSSIDTEYL 437
>gi|422804668|ref|ZP_16853100.1| DNA photolyase [Escherichia fergusonii B253]
gi|324114816|gb|EGC08784.1| DNA photolyase [Escherichia fergusonii B253]
Length = 472
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 158/482 (32%), Positives = 237/482 (49%), Gaps = 39/482 (8%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLNGLRI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + A
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENRVTHLFYNYQYEVNERARDVEVERA--R 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKA-LTTFINGPLIEYSKNRRKA 235
SG + PS TL + +S A P A A L F EY + R
Sbjct: 178 SGSLDPAPSITLNYPRQS-------FDTAHFPVEEKAVIAQLRQFCQSGAGEYEQQRDFP 230
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R+
Sbjct: 231 AVEGTSRLSASLATGRLSPRQCLHRLLAEQPQALDGG--AG----SVWLNELIWREFYRH 284
Query: 296 MSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
+ HP RP + W + + KAW++G+TGYP+VDA MR+L +TGW+H+R+
Sbjct: 285 LMTYHPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRL 344
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP
Sbjct: 345 RMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTT 404
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
+G KFD GE++R+WLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 405 QGEKFDHEGEFIRQWLPELRDVPGKAVHEPWKWA----QKAGVTL--DYPQPIVDHKEAR 458
Query: 475 CR 476
R
Sbjct: 459 LR 460
>gi|56696791|ref|YP_167152.1| deoxyribodipyrimidine photolyase [Ruegeria pomeroyi DSS-3]
gi|56678528|gb|AAV95194.1| deoxyribodipyrimidine photolyase [Ruegeria pomeroyi DSS-3]
Length = 481
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 151/494 (30%), Positives = 239/494 (48%), Gaps = 27/494 (5%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHS 59
MS I W RRDLR+ D+P LAA +G V+ VFI +E G + L
Sbjct: 1 MSETRAIIYWLRRDLRLADHPGLAAAAASGRPVVPVFI---HDESVAALGAAPAFRLGLG 57
Query: 60 LSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
L ++L +G+ L+ +R + + + L ++ TGA +++ Y P ++ RD K AL
Sbjct: 58 LERFGATLGDMGSRLILRRGS-APAVLQALIAETGAGAVWWTREYTPQAITRDSALKTAL 116
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFW----EKCLSMPFDPDAPLLPPKRI 175
GI RSF LL+EPW V G + + FW ++ +S P A + PP+
Sbjct: 117 QQAGIEARSFGGALLFEPWTVETGAGGFYKVYTPFWRAVSQREVSAPDPAPARVRPPEAW 176
Query: 176 NSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
S SD + + A++A +PG + A + L FI + +Y R
Sbjct: 177 PG---SEALSDWGL--GAPMRRGAAVVATHQAPGEAAALERLDRFIATGIGQYDACRDLP 231
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
TS LS L GE+ R ++H A E G + FLK + R+++ +
Sbjct: 232 AGDGTSTLSDALSLGEIGPRTLWHR--------AGEAAHKGAQGAETFLKQLVWRDFAYH 283
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVD--EGYFKAWRQGRTGYPLVDAGMRELWATGWLHDR 353
+ ++ P+ + F W D + F AW +GRTG PLVDA MRE++ TG +H+R
Sbjct: 284 LMYHTPHLLSENWRPGWEVFPWATDPADPGFVAWTRGRTGVPLVDAAMREMYVTGRMHNR 343
Query: 354 IRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQ 413
R++ +S+ K L + W+ GM +F D L D D ++A+GWQ+++G PD + RI NP+
Sbjct: 344 ARMIAASYLTKHLMVHWKLGMDWFADCLTDWDPAANAMGWQWVAGCGPDAAPYFRIFNPE 403
Query: 414 FEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAA 473
+ KFDP G Y W+ E P ++A V ++ + ++YP PI+ +D
Sbjct: 404 TQAKKFDPKGRYRNHWIAEGQAEPPRAALSYFDA---VPRSWNLRPDASYPPPIMALDQG 460
Query: 474 KCRLDEALSEMWQQ 487
+ R A + + Q
Sbjct: 461 RRRALSAYASAFSQ 474
>gi|222155443|ref|YP_002555582.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli LF82]
gi|387615975|ref|YP_006118997.1| deoxyribodipyrimidine photolyase [Escherichia coli O83:H1 str. NRG
857C]
gi|222032448|emb|CAP75187.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli LF82]
gi|312945236|gb|ADR26063.1| deoxyribodipyrimidine photolyase [Escherichia coli O83:H1 str. NRG
857C]
Length = 472
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 153/487 (31%), Positives = 237/487 (48%), Gaps = 35/487 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR DN ALAA R + V+A++I P + + + L+ L +
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLNALQN 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L G L+ + D SV ++ +V T LF+N+ Y+ RD +A+ L +
Sbjct: 65 ALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERTL--R 122
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRINS 177
+ F+ ++ P V + + F F W K L MP + PK +S
Sbjct: 123 NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRSS 178
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
G + PS TL + +S ++ + A L F EY + R
Sbjct: 179 GSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAV 232
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 233 EGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHLM 286
Query: 298 FNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
+P RP + W + + KAW++G+TGYP+VDA MR+L +TGW+H+R+R+
Sbjct: 287 TYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +G
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFD GE++R+WLPEL +P + +H PW E G+ L +YP PIV A+ R
Sbjct: 407 EKFDREGEFIRQWLPELRDVPGKAVHEPWKWAEKT----GVTL--DYPQPIVDHKEARLR 460
Query: 477 LDEALSE 483
A E
Sbjct: 461 TLAAYEE 467
>gi|427407608|ref|ZP_18897810.1| hypothetical protein HMPREF9718_00284 [Sphingobium yanoikuyae ATCC
51230]
gi|425714112|gb|EKU77123.1| hypothetical protein HMPREF9718_00284 [Sphingobium yanoikuyae ATCC
51230]
Length = 458
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 155/445 (34%), Positives = 233/445 (52%), Gaps = 31/445 (6%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+I+WFR+DLR+ D ALAA +AG VI ++I E + G SRWWL HSL+ LD
Sbjct: 5 TIIWFRQDLRLSDQAALAAAAQAGPVIPLYILDDESPRQWAMGGASRWWLHHSLASLDER 64
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L + G+ L+ +R L +V + +GA + ++P R E A+ I +
Sbjct: 65 LGTKGSRLILRRGR-CADVLAQVAEESGAQVVHAIRHHEPWW-----RNAEKAVARQIDL 118
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM----SR 182
R + LL V G P+ + F+ + + + P P P+RI + R
Sbjct: 119 RLHDGGLLLPVEAVRTGGGTPYRIYTPFF-RAVMLHMPPAPPQPAPQRIAAPSHWPVSDR 177
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
TL+ D WSPG A + L +F+ G + +Y+ R TS
Sbjct: 178 LEDWTLLPRDPDWASG---FPADWSPGEEGAKRYLDSFL-GEVGDYAVARDLPSQEGTSR 233
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP- 301
LSPHLHFGE+S KV+H R+ Q GD +V +LK + R+Y+ P
Sbjct: 234 LSPHLHFGEISPAKVWH--RVAQAP--------GDATV--YLKELIWRDYAHNQVSALPT 281
Query: 302 YSHE--RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
Y E +P + + G + AW++G+TGYP+VDAGMR+LW TGW+H+R+R++ +
Sbjct: 282 YGSENAQPAFDAMHWRDLREARGDWTAWKRGQTGYPIVDAGMRQLWQTGWMHNRVRMIAA 341
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF +K L + WR G ++FWDTL+DAD ++++ WQ+++G+ D F RI P + KF
Sbjct: 342 SFLIKHLLIDWRHGARWFWDTLVDADYANNSVNWQWVAGSGVDANLFTRIMAPLTQSDKF 401
Query: 420 DPNGEYVRRWLPELARLPTEWIHHP 444
D +Y+R+W+PELA L IH P
Sbjct: 402 D-AADYIRQWVPELAHLDDRVIHDP 425
>gi|401762812|ref|YP_006577819.1| deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp.
cloacae ENHKU01]
gi|400174346|gb|AFP69195.1| deoxyribodipyrimidine photolyase [Enterobacter cloacae subsp.
cloacae ENHKU01]
Length = 470
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 147/467 (31%), Positives = 223/467 (47%), Gaps = 26/467 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRA--GAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR DLRV DN ALAA R+ +V+A+FI PE+ + +LK L+ L
Sbjct: 5 LVWFRADLRVHDNIALAAACRSEDASVLALFIATPEQWQQHDMAPRQAAYLKSHLNVLQH 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
SL G L+ K +D + L + + G T LF+N+ Y+ RD + + L
Sbjct: 65 SLAEKGIPLIYKEVSDFAAQLQMLQAICQQNGVTHLFYNYQYELNEQRRDRQLENML--D 122
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
G+ F+ ++ P V + + F F + + + + ++
Sbjct: 123 GVVCEGFDDSVMLAPGSVMTGSHEMYKVFTPFKNAFVKRLKEALPECVAAPAVRGDAITD 182
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
P T + +S + LL A +A L F EY R TS
Sbjct: 183 LPELTFNYPQQS---FDDLLFPASE---KSAIAKLRQFCKQGAGEYDARRDFPAVEGTSR 236
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP- 301
LS L G +S R+ H + +Q + G + ++L + RE+ R++ HP
Sbjct: 237 LSACLALGVLSPRQCLHRLLAEQPQALDGGTGS------VWLNELIWREFYRHLMTYHPD 290
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
RP + W DE AW++G TGYP+VDA MR+L TGW+H+R+R++ +SF
Sbjct: 291 LCKHRPFIPWTDNVKWQHDEARLLAWKKGETGYPIVDAAMRQLNETGWMHNRLRMITASF 350
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +G KFD
Sbjct: 351 LVKDLLIDWRVGERYFISQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGQKFDA 410
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
NG+++RRWLP L +P + IH PW + G++L +YP PIV
Sbjct: 411 NGDFIRRWLPALRHVPAKAIHDPWAWADK----QGVKL--DYPRPIV 451
>gi|417274897|ref|ZP_12062237.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2.4168]
gi|425114064|ref|ZP_18515887.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 8.0566]
gi|425120593|ref|ZP_18522289.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 8.0569]
gi|432659940|ref|ZP_19895591.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE111]
gi|386233325|gb|EII65310.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2.4168]
gi|408568638|gb|EKK44664.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 8.0569]
gi|408572263|gb|EKK48183.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 8.0566]
gi|431202291|gb|ELF00984.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE111]
Length = 472
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 152/479 (31%), Positives = 236/479 (49%), Gaps = 33/479 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSMPFDPDAPLLPPKRINSG 178
+ + F+ ++ P V + + F F W K L + PK +SG
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMS--ECVAAPKVRSSG 179
Query: 179 DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
+ PS TL + +S ++ + A L F EY + R
Sbjct: 180 SIEPSPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAVE 233
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 234 GTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLNELIWREFYRHLIT 287
Query: 299 NHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
HP RP + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R++
Sbjct: 288 YHPSLCKHRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMI 347
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
+SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +G
Sbjct: 348 TASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGE 407
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFD GE++R+WLPEL +P + +H PW Q AG+ L +YP PIV A+ +
Sbjct: 408 KFDHEGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGVTL--DYPQPIVEHKEARVQ 460
>gi|334132216|ref|ZP_08505977.1| Deoxyribodipyrimidine photolyase [Methyloversatilis universalis
FAM5]
gi|333442862|gb|EGK70828.1| Deoxyribodipyrimidine photolyase [Methyloversatilis universalis
FAM5]
Length = 483
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 155/477 (32%), Positives = 240/477 (50%), Gaps = 29/477 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPE------EEGPYYPGRVSRWWLKHSL 60
+VWFRRDLR++D+ AL +RAG V VF++ + EG RV ++ S+
Sbjct: 9 LVWFRRDLRIDDHAALYHALRAGGPVWCVFVFDTDILNELLAEGLSADRRVE--FIHASV 66
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
S LD++LR+LG L+ R + + + + G + N Y+P +L RD +AL
Sbjct: 67 SELDAALRALGGGLIV-RHGRARGLIPRLARQLGVAAVLANRDYEPGALARDRAVHDALA 125
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSMPFDPDAPLLPPKRINS 177
GI +F +++E +V G+PF+ F + W K L+ PF A P R +
Sbjct: 126 QDGIGFDTFKDQVIFECDEVLTQGGKPFSVFTPYKNAWLKKLT-PFHLKAY---PVRTYA 181
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
G ++ P+ T+ + L G S AD F + + Y R +
Sbjct: 182 GALAAPPAGTIPSLADMGFAPTNLPTLKLPTGMSGADTLFDGFCD-RIDRYKVLRDFPAA 240
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
S+LS HL FG VS+R++ A E + G +L + R++ +
Sbjct: 241 KGPSYLSVHLRFGTVSIRRL-----------AREAHARGGAGAETWLSELIWRDFYFQIL 289
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
+++P+ WV D+ F+AW +GRTGYPLVDA R+L TG++H+R+R+V
Sbjct: 290 WHNPHVLTGSFRPEYDAVHWVDDDEKFRAWCEGRTGYPLVDAAQRQLAQTGYMHNRLRMV 349
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
+SF K L + WR G +F L D DL ++ GWQ+ + T D + + RI NP +
Sbjct: 350 SASFLTKDLGIHWRRGEHWFARQLNDFDLAANNGGWQWAASTGCDAQPWFRIFNPVTQSE 409
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
KFD +G+++RR+ PELA+ + IH PW A + AG +GS+YP PIV AA+
Sbjct: 410 KFDADGQFIRRYCPELAKFDKKRIHAPWLATPLEQKMAGCVIGSDYPAPIVDHAAAR 466
>gi|430807586|ref|ZP_19434701.1| deoxyribodipyrimidine photo-lyase [Cupriavidus sp. HMR-1]
gi|429500109|gb|EKZ98493.1| deoxyribodipyrimidine photo-lyase [Cupriavidus sp. HMR-1]
Length = 518
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 152/487 (31%), Positives = 238/487 (48%), Gaps = 34/487 (6%)
Query: 7 SIVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPEEEGPY-----YPGRVSRWWLKHSL 60
+VW RRDLR +DN AL ++ V VF++ E P + R + L+ +L
Sbjct: 27 GLVWLRRDLRTDDNAALHYALKHCRQVWCVFVFDREILAPLLARGLHADRRVEFILR-TL 85
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
L +L G L+ T + ++ + +F NH Y+P + RD + L
Sbjct: 86 EPLRRALEDSGGGLIVLDGT-ARQAIPRLAAELEVEAVFANHDYEPAANARDDAVRRTLA 144
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSMPFDPDAPLLPPKRINS 177
A + +F +++E ++ QG+PF+ F + W + + PFD L P I
Sbjct: 145 ADSRVLLTFKDQVIFERDEILTGQGRPFSVFTPYKNAWLRTVR-PFD-----LRPYPIGK 198
Query: 178 GDMSRCPSDTL------VFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKN 231
+ P D +N LA P S+ AL + +Y +
Sbjct: 199 YLEALAPVPQRYRGQWPTLADLGFTATN--LAGIAMPTGSDGAHALFDEFLPRIGDYGRR 256
Query: 232 RRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLRE 291
R S+LS HL FG +S+R L R + G A E ++L + R+
Sbjct: 257 RDFPAVRGPSYLSVHLRFGTISIRT---LARAAHDAMLRGG--AASEGAAVWLSELIWRD 311
Query: 292 YSRYMSFNHPYSHE----RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWAT 347
+ + +HP E P L++ + + YF AW +TGYPL+DA M ++ +
Sbjct: 312 FYFMILHHHPRVAEGKSFHPEYDALRWIAPATGDRYFAAWCDAQTGYPLIDAAMLQIRQS 371
Query: 348 GWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFD 407
G++H+R+R+V +SF VK L + WR G +YF D L D DL ++ GWQ+ + T D + +
Sbjct: 372 GYMHNRLRMVTASFLVKDLGVDWRRGEQYFADQLNDFDLAANNGGWQWAASTGCDAQPYF 431
Query: 408 RIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPI 467
RI NP + KFDP G+++R++LP LA LP ++H PW APE VL+AAG++LG +YP PI
Sbjct: 432 RIFNPVTQSEKFDPQGQFIRKYLPMLAALPDRYVHAPWTAPEEVLRAAGVKLGEDYPRPI 491
Query: 468 VRIDAAK 474
V+ D A+
Sbjct: 492 VQHDVAR 498
>gi|215485731|ref|YP_002328162.1| deoxyribodipyrimidine photolyase [Escherichia coli O127:H6 str.
E2348/69]
gi|312965140|ref|ZP_07779377.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2362-75]
gi|417754463|ref|ZP_12402558.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC2B]
gi|418995580|ref|ZP_13543194.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC1A]
gi|419000853|ref|ZP_13548412.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC1B]
gi|419006364|ref|ZP_13553820.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC1C]
gi|419012229|ref|ZP_13559594.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC1D]
gi|419017135|ref|ZP_13564461.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC1E]
gi|419022825|ref|ZP_13570067.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC2A]
gi|419027634|ref|ZP_13574833.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC2C]
gi|419033400|ref|ZP_13580498.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC2D]
gi|419038415|ref|ZP_13585474.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC2E]
gi|215263803|emb|CAS08139.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
O127:H6 str. E2348/69]
gi|312290231|gb|EFR18114.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2362-75]
gi|377848970|gb|EHU13946.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC1A]
gi|377851165|gb|EHU16120.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC1C]
gi|377853500|gb|EHU18399.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC1B]
gi|377862994|gb|EHU27801.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC1D]
gi|377867109|gb|EHU31873.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC1E]
gi|377868463|gb|EHU33207.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC2A]
gi|377879409|gb|EHU43982.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC2B]
gi|377883819|gb|EHU48337.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC2D]
gi|377885517|gb|EHU50012.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC2C]
gi|377898016|gb|EHU62379.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC2E]
Length = 472
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 240/488 (49%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR DN ALAA R + V+A++I P + + + L+ L +
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAVHNVSPRQAELINTQLNALQN 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ R D ++ +E+VK A T LF+N+ Y+ RD +A+ AL
Sbjct: 65 ALAEKGIPLLF-REVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVQAERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDGVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + + ++ + A L F EY + R
Sbjct: 178 SGSIDPAPSITLNYPRQPFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SIWLNELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P RP + W + + KAW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 ITYYPSLCKHRPFIVWTDRVQWQSNSAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++R+WLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGVTL--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|293413984|ref|ZP_06656633.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B185]
gi|291434042|gb|EFF07015.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B185]
Length = 472
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 153/481 (31%), Positives = 239/481 (49%), Gaps = 37/481 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-ELVKQVCAENSVTHLFYNYQYEVNERARDVDVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIKPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLNELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
HP RP + W + + +AW++G+TGYP+VDA MR+L ++GW+H+R+R
Sbjct: 286 ITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSSGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLINWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++R+WLPEL +P + +H PW E AG++L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRQWLPELRNVPGKSVHEPWKWAEK----AGVKL--DYPQPIVEHKEARV 459
Query: 476 R 476
+
Sbjct: 460 Q 460
>gi|411010414|ref|ZP_11386743.1| deoxyribodipyrimidine photolyase [Aeromonas aquariorum AAK1]
Length = 473
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 157/487 (32%), Positives = 230/487 (47%), Gaps = 26/487 (5%)
Query: 7 SIVWFRRDLRVEDNPALAAGV-RAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR DLR+ DNPAL G G V A++I +P + + V + +L + L
Sbjct: 2 KLVWFRNDLRLADNPALRHGCANDGPVAALYILSPTQWRQHKLAPVRQRFLLAQVDALGR 61
Query: 66 SLRSLGTSLVTKRS---TDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L +LG L R + ++L ++ + G TQL+ N + RD AL Q
Sbjct: 62 DLAALGIPLHLLRVETFAEVPAALADLCRELGVTQLYANQTIEIDEQRRDQAVTTALAEQ 121
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSMPFDPDAPLLPPKRINSGD 179
GI N + P V G+ F F F W K L D D ++ R+ +
Sbjct: 122 GIGCHWLNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKAL----DEDGFVI--HRVPAPR 175
Query: 180 MSRCPSDTLVFEDESEKGSNALLARA-WSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
P L D + L A W G + A + L F+ +++Y + R A
Sbjct: 176 GEPLPWQPLAERDFVDAALGELAADPRWPVGEAEASRRLNDFLEQAVLDYGETRDFPAIA 235
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LSP+L G +S R+ + ++Q +KA V +L + RE+ R++
Sbjct: 236 GTSVLSPYLAAGIISPRQC--VAALQQRLGYRPQSKAQPGFV--WLNELIWREFYRHLLV 291
Query: 299 NHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
P S RP W D F AW +GRTGYP+VDA MR L ATGW+H+R+R++
Sbjct: 292 LIPTLSMNRPFKPETSALPWSWDPDAFAAWCEGRTGYPIVDAAMRCLNATGWMHNRLRMI 351
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V+SF K L + WR G YF L+D DL ++ GWQ+ +GT D + R+ NP +G
Sbjct: 352 VASFLTKDLHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQ 411
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
+FDP GE++R W+ ELA LP ++H P L+ G +YP P+V A+ R
Sbjct: 412 RFDPQGEFIRTWVSELADLPAAYLHQ----PHDWLRLKG---RRDYPAPMVDHAVARVRA 464
Query: 478 DEALSEM 484
E +
Sbjct: 465 IEMFRAL 471
>gi|390569912|ref|ZP_10250187.1| deoxyribodipyrimidine photo-lyase [Burkholderia terrae BS001]
gi|420254982|ref|ZP_14757945.1| deoxyribodipyrimidine photolyase [Burkholderia sp. BT03]
gi|389938145|gb|EIM99998.1| deoxyribodipyrimidine photo-lyase [Burkholderia terrae BS001]
gi|398047192|gb|EJL39755.1| deoxyribodipyrimidine photolyase [Burkholderia sp. BT03]
Length = 504
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 161/506 (31%), Positives = 245/506 (48%), Gaps = 64/506 (12%)
Query: 7 SIVWFRRDLRVEDNPALAAGVR-AGAVIAVFI-----------WAPEEE---GPYYPGRV 51
+VWFRRDLR DN AL ++ V VF+ WA E + G R+
Sbjct: 14 GLVWFRRDLRTGDNAALYYALKHCERVWCVFVFDTTILQPLIDWANEHDDHKGKVQDRRI 73
Query: 52 SRWWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVR 111
++ SL LD SL+ G L+ D + + A +F NH Y+P+++ R
Sbjct: 74 E--FILASLEELDRSLKEGGGGLIVLHG-DPHEEIPRLAAQLEAEAVFTNHDYEPVAIER 130
Query: 112 DHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSMPFD---- 164
D E L G + +F +++E ++ + QG+PFA F + W K L+ PFD
Sbjct: 131 DESVAERLRDDGRQLLTFKDQVIFEREELLNGQGKPFAVFTPYKNAWLKKLT-PFDLKPY 189
Query: 165 -----PDAPLLPPKRINS-----GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNAD 214
+ PP++++ G M P + LL G S A
Sbjct: 190 PVERYAKSLARPPRKLDHAWPTLGQMGFAPG---------KLAETKLLT-----GMSGAQ 235
Query: 215 KALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNK 274
L F+ + Y+ R + TS LS HL FG VS+R + L ++S +G
Sbjct: 236 TLLEDFVTR-IDSYADRRDFPAARGTSHLSVHLRFGTVSIRTLARLAH--EMSLQPDGQG 292
Query: 275 AGDESVNLFLKSIGLREYSRYMSFNHPYSHER----PLLGHLKFFSWVVDEGYFKAWRQG 330
A +L + R++ + +HP+ +R P L++ + + F AW +G
Sbjct: 293 AA-----TWLSELIWRDFYFMILAHHPHIAKRASFKPEFDTLRWETGKQADALFAAWCKG 347
Query: 331 RTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDA 390
RTGYPLVDA M +L TG++H+R+R+V +SF K L + WR G +YF + L D D ++
Sbjct: 348 RTGYPLVDAAMLQLNQTGFMHNRLRMVTASFLAKDLGIDWRRGERYFEEKLNDFDFSANN 407
Query: 391 LGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPES 450
GWQ+ + T D + + RI NP + KFDP G +++R+LPEL ++P +WIH PW A
Sbjct: 408 GGWQWAASTGCDAQPWFRIFNPVTQSEKFDPQGLFIKRFLPELEKVPAKWIHAPWQANPD 467
Query: 451 VLQAAGIELGSNYPFPIVRIDAAKCR 476
L+ G+ LG +YP P+V D AK R
Sbjct: 468 DLKDWGVVLGKDYPQPVV--DHAKAR 491
>gi|417945000|ref|ZP_12588237.1| deoxyribodipyrimidine photolyase [Escherichia coli XH140A]
gi|342363174|gb|EGU27284.1| deoxyribodipyrimidine photolyase [Escherichia coli XH140A]
Length = 472
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 154/481 (32%), Positives = 238/481 (49%), Gaps = 37/481 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAARRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPSPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLNELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
HP RP + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 ITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++R+WLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 406 GEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGVTL--DYPQPIVEHKEARV 459
Query: 476 R 476
+
Sbjct: 460 Q 460
>gi|386334355|ref|YP_006030526.1| deoxyribodipyrimidine photolyase [Ralstonia solanacearum Po82]
gi|334196805|gb|AEG69990.1| deoxyribodipyrimidine photolyase [Ralstonia solanacearum Po82]
Length = 548
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 157/505 (31%), Positives = 247/505 (48%), Gaps = 32/505 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPEEEGPYYPG--RVSRW--WLKHSLSH 62
+VWFRRDLR D+ AL +R V F++ + P R R +++ ++
Sbjct: 54 LVWFRRDLRHIDHAALHYALRHCREVFCAFVFDRDILDPLLARGLRADRRLEFIRAAVEA 113
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L +LR G L+ + ++ + + G +F NH +P +L RD ++AL Q
Sbjct: 114 LRGALREAGGELIVLHD-HAHHAIPSLAQQLGVEAVFANHDEEPAALARDAVVRDALARQ 172
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSMPFDPDAPLLPPKRINSGD 179
A F +++E +V + QG+P+ F + W +S PFD A + P +
Sbjct: 173 PCAWFDFKDQVIFERAEVLNGQGKPYGVFTPYKNAWLAAVS-PFDLRAYPIEP---HLHA 228
Query: 180 MSRCPSD----TLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
++R P T E SN L A A G S A+ L F + +Y R
Sbjct: 229 LARPPQGLAPATPSLEAMGFARSN-LSAIALPTGMSGAEALLDDFATR-MDDYHARRDYP 286
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
S+LS HL FG VS+R + + A+ G +L + R++
Sbjct: 287 AMRGPSYLSTHLRFGTVSIRTL--------AARAHAAMLHGSRGAATWLSELIWRDFYFM 338
Query: 296 MSFNHPYSHE----RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLH 351
+ + P E RP +++ + F AWR RTGYPLVDA M ++ +G++H
Sbjct: 339 ILHHRPDLAEGASFRPEFDRIRWVEGETGDARFAAWRDARTGYPLVDAAMLQIRQSGYMH 398
Query: 352 DRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDN 411
+R+R+V +SF +K L + WR G YF D L D DL ++ GWQ+ + + D + + RI N
Sbjct: 399 NRLRMVAASFLIKDLGVDWRRGEHYFADALNDFDLAANNGGWQWAASSGCDAQPWFRIFN 458
Query: 412 PQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRID 471
P + KFDP G ++R++LP+LA+LP ++H PW AP VL+ AG+ LG YP PIV
Sbjct: 459 PVTQSEKFDPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKTAGVALGETYPRPIVEHA 518
Query: 472 AAK-CRLDEALSEMWQQEAASRAAI 495
AA+ L+ ++ + +RAA+
Sbjct: 519 AARAATLERYAPAKVERTSGARAAV 543
>gi|171463059|ref|YP_001797172.1| deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171192597|gb|ACB43558.1| Deoxyribodipyrimidine photo-lyase [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 490
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 148/500 (29%), Positives = 240/500 (48%), Gaps = 55/500 (11%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKH------- 58
++VW RRDLR+ DN AL ++ V FI+ E P G++ LKH
Sbjct: 4 ALVWLRRDLRLYDNSALHHALKESRQVWLAFIFDTEILKPLLRGKLDANGLKHDRRVDFI 63
Query: 59 --SLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAK 116
+ +D LR+ G L+ R ++ + ++ G +F NH Y+P ++ RD
Sbjct: 64 WQGIKQIDDQLRAQGGGLIV-RFSNPTECIPQLASELGVNAVFANHDYEPSAIERDEVVT 122
Query: 117 EALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL------SMPFDPDA 167
L +GI +F +++E ++ F+ F + W K L + +P
Sbjct: 123 AKLEKEGIEFLTFKDQVIFEKKEILTNSNTVFSIFTPYKNNWFKTLQEKDLAAYECNPKP 182
Query: 168 PLLP--PKRINS-----GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTF 220
L PK+I+ M CP+ + +G A L + T
Sbjct: 183 GQLAAIPKKISKPLPSLESMGFCPTGIESYLPPGSEGGQAFL------------EDFLTR 230
Query: 221 INGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESV 280
I+ +Y +R S+LS HL FG +S+R + V A+ AG
Sbjct: 231 ID----QYQISRDFPAIKGVSYLSTHLRFGMLSIRGL--------VREAHRRMLAGSMGA 278
Query: 281 NLFLKSIGLREYSRYMSFNHPYSHE----RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPL 336
++L + R++ + NHP + +P ++ + S + F AW +G+TGYPL
Sbjct: 279 TIWLSELIWRDFYFMILANHPRLAKGASFKPDYDNIVWESGATAKKLFTAWCEGKTGYPL 338
Query: 337 VDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYI 396
VDA M +L +G++H+R+R+VV+SF K L + WRWG YF + L D +L S+ GWQ++
Sbjct: 339 VDAAMHQLNQSGYMHNRLRMVVASFLTKDLGIDWRWGEAYFAEHLNDFELSSNNGGWQWV 398
Query: 397 SGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAG 456
S + D + + RI NP + KFDP G++++R+LP+L +L + +H PW A L+AAG
Sbjct: 399 SSSGCDAQPYFRIFNPITQSEKFDPEGKFIKRYLPQLEKLSKKSVHTPWKAGHIELEAAG 458
Query: 457 IELGSNYPFPIVRIDAAKCR 476
I L +YP P+V D A+ +
Sbjct: 459 ISLDKDYPLPVVDHDEARKK 478
>gi|422808697|ref|ZP_16857108.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J1-208]
gi|378752311|gb|EHY62896.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J1-208]
Length = 467
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 139/476 (29%), Positives = 226/476 (47%), Gaps = 47/476 (9%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S++WFRRDLRV DN AL + ++ +F P + G S S++H
Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEDDLLLLFQVNP---AQFITGSPSHQAFFASVAHFKQ 58
Query: 66 SL-RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ ++ ++ + L + + + +++FN RD A+ Q I
Sbjct: 59 EIDKTAHLQIMFGEPVECFKQLKDTLPSWD--KVYFNRDETGYGAERDEVAQAFFDEQKI 116
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEK----CLSMPFDP--------DAPLLPP 172
V+SF+ L+ +V + + + F +++K PF L P
Sbjct: 117 EVQSFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKTENIWKEDLFPK 176
Query: 173 KRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNR 232
+M+ C L D E+ +N LA FI + +Y K R
Sbjct: 177 YEEQFAEMT-CDLPIL---DSGERAANTRLA---------------NFIKHDIADYDKAR 217
Query: 233 RKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREY 292
+ TS LS +L GE+S+R ++ + Q + A EG F K + R++
Sbjct: 218 DFPELDKTSHLSRYLRTGEISIRTIWQAL---QETEATEGRAT-------FEKELCWRDF 267
Query: 293 SRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHD 352
+ + P P+ + +F W + +FKAW++G TG+PLVDA MR+L TGW+H+
Sbjct: 268 YNMIYVSFPNQKNEPIQENYRFIEWENNREFFKAWQEGETGFPLVDAAMRQLKETGWMHN 327
Query: 353 RIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNP 412
R+R++ +SF K L + WR+G KYF L+D D S+ GWQ+ + T D + RI NP
Sbjct: 328 RLRMITASFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNP 387
Query: 413 QFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
+ KFDP G+++R+++ ELA LP ++IH P E+V + G+ LG +YPFP+V
Sbjct: 388 TTQAQKFDPTGKFIRKYVKELANLPDKYIHQPEKMSETVQKEHGLILGKDYPFPLV 443
>gi|341615188|ref|ZP_08702057.1| deoxyribodipyrimidine photo-lyase [Citromicrobium sp. JLT1363]
Length = 470
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 150/450 (33%), Positives = 220/450 (48%), Gaps = 31/450 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIW---APEEEGPYYPGRVSRWWLKHSLSHLD 64
IVW RRDLR+ D PAL A +AG V+ VFI P+ + G RWWL HSL L
Sbjct: 6 IVWLRRDLRLADQPALHAAAQAGPVVPVFILDDERPKGDDDRTYGGAHRWWLHHSLESLS 65
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+V ++ DSVS L + A + N Y+P + K+AL G
Sbjct: 66 RGFGRHNARIVLRKG-DSVSVLAGLAHELEAEAVHANRHYEPWWREAEEELKDAL-PDGT 123
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
+ + + L P G P+ + F+ L + D +P DM
Sbjct: 124 RLCLHDGNYLMPPGTATTGSGDPYKIYTPFYRAMLEIMPPRDELPVPSTISQPSDMPE-- 181
Query: 185 SDTLVFEDESEKGSN--ALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
SD L D N + W+ G A + L + + + EY R TS
Sbjct: 182 SDALADWDLLPTSPNWATQMEDFWTVGEDAAHERLGWWADH-VAEYEDGRNLPSVDQTSQ 240
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP- 301
+SPHLH+GE+S ++H ++ K+ ++G K F + R+Y++ + + P
Sbjct: 241 MSPHLHWGEISPVTIWHALKDKR----SDGWKT-------FESELIWRDYAQNIVYQFPD 289
Query: 302 YSHE--RPLLGHLKFF-----SWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
Y E R + K + ++ E +AW+ GRTGYP+VDAGMR+LWA GW+H+R+
Sbjct: 290 YPRETYRDAIDDTKLWRNPNRGHIIQEE-LEAWQMGRTGYPIVDAGMRQLWALGWMHNRV 348
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R++ +SF +K L + WR G ++FWDTL+D D S+ WQ+++GT D F RI P
Sbjct: 349 RMIAASFLIKHLLIDWRHGERWFWDTLVDGDYASNGTNWQWVAGTGVDSNMFPRIMAPLK 408
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHP 444
+ KFD G Y+R+W+PELA LP IH P
Sbjct: 409 QSEKFDAAG-YIRKWVPELADLPDGEIHDP 437
>gi|312970785|ref|ZP_07784964.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1827-70]
gi|310336546|gb|EFQ01713.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1827-70]
Length = 472
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 239/488 (48%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDGSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P P + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVML--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|421889155|ref|ZP_16320215.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Ralstonia solanacearum K60-1]
gi|378965575|emb|CCF96963.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Ralstonia solanacearum K60-1]
Length = 522
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 152/474 (32%), Positives = 233/474 (49%), Gaps = 25/474 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPEEEGPYYPG--RVSRW--WLKHSLSH 62
+VWFRRDLR D+ AL +R V F++ P R R +++ ++
Sbjct: 28 LVWFRRDLRHIDHAALHYALRHCREVFCAFVFDRGILDPLLARGLRADRRVEFIRAAVEA 87
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L +LR G L+ + ++ + + G +F NH +P +L RD ++AL Q
Sbjct: 88 LRGALREAGGELIVLHD-HAHHAIPSLAQQLGVEAVFANHDEEPAALARDAAVRDALARQ 146
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSMPFDPDA-PLLPPKRINSG 178
A F +++E +V + QG+P+ F + W +S PFD A P+ P +
Sbjct: 147 PCAWFDFKDQVIFERAEVLNGQGKPYGVFTPYKNAWLAAVS-PFDLRAYPIEPHLHALAR 205
Query: 179 DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
R T E SN L A A G S A+ L F + +Y R
Sbjct: 206 PPQRLAPATPSLEAIGFARSN-LSAIALPTGMSGAEALLDDFATR-MDDYHARRDYPAVR 263
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
S+LS HL FG VS+R + + A+ G +L + R++ +
Sbjct: 264 GPSYLSTHLRFGTVSIRTL--------AARAHSAMLHGSRGAATWLSELIWRDFYFMILH 315
Query: 299 NHPYSHE----RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
+ P E RP +++ S + F AWR RTGYPLVDA M ++ +G++H+R+
Sbjct: 316 HRPDLAEGASFRPEFDRIRWVSGETGDVRFAAWRDARTGYPLVDAAMLQIGQSGYMHNRL 375
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R+V +SF +K L + WR G YF D L D D ++ GWQ+ + + D + + RI NP
Sbjct: 376 RMVAASFLIKDLGVDWRRGEHYFADALNDFDFAANNGGWQWAASSGCDAQPWFRIFNPVT 435
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
+ KFDP G ++R++LP+LA+LP ++H PW AP VL+AAG+ LG+ YP PIV
Sbjct: 436 QSEKFDPQGHFIRKYLPQLAKLPDRYLHAPWTAPADVLKAAGVALGATYPRPIV 489
>gi|336451322|ref|ZP_08621760.1| deoxyribodipyrimidine photolyase [Idiomarina sp. A28L]
gi|336281693|gb|EGN74965.1| deoxyribodipyrimidine photolyase [Idiomarina sp. A28L]
Length = 497
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 148/483 (30%), Positives = 244/483 (50%), Gaps = 28/483 (5%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWL-KHSLSHLD 64
++VWF++DLR+ DN A+ + + I + + + +W L + L+ L
Sbjct: 2 TALVWFKQDLRLLDNDAVLHACKNNSAIRFLVTPTLSQFAEHHWAAIKWDLYQRQLNELG 61
Query: 65 SSLRSLGTSL-VTK--RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTA 121
L LG SL V K R + L + G T ++FN Y + RD E L A
Sbjct: 62 FDLAELGHSLEVVKLDRFSQCAEFLQQYCAEQGITDVYFNRDYALDEVRRDKEVAETLQA 121
Query: 122 Q-GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPK---RINS 177
+ G+ V SF+++LL P + + +G+ + F F++ L + P P+ +I
Sbjct: 122 KNGLTVHSFDSNLLVPPEQIKNGKGEYYKVFTPFFKVWLKYIREHGVPAPYPRCALKIEG 181
Query: 178 --GDMSRCPSDTLVFEDESEKGSNAL----LARAWSPGWSNADKALTTFINGPLIEYSKN 231
G + ++ + +D+S N + ++ W G +N K F+ + +Y
Sbjct: 182 IEGVGAYKTTELDLPKDKSNLPGNRIGQLKSSKKWLVGEANLRKKTQEFVRELVDDYKAK 241
Query: 232 RRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLRE 291
R TS LS + G +S R HL +++VS E + + +L + RE
Sbjct: 242 RDFPAIDGTSTLSAYFEIGALSPRVAVHL--LQRVS--PEFPEGLSDGAYTWLSELAWRE 297
Query: 292 YSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWL 350
+ +++ F+ P + P F WV D+ F AW +GRTG+P+VDAGMR+L ATGW+
Sbjct: 298 FYQHLMFHEPRLAMGEPFQAEQSAFPWVNDKAQFVAWSEGRTGFPIVDAGMRQLNATGWM 357
Query: 351 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRID 410
H+R+R++V+SF VK L + W+WG +YF L+D ++ GWQ+ +GT D + R+
Sbjct: 358 HNRVRMIVASFLVKDLHINWQWGEEYFMQRLIDGSFPANNGGWQWSAGTGTDAAPYFRVF 417
Query: 411 NPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGI---ELGSN--YPF 465
NP +G KFDP+G Y+R+W+ EL +P++ IH+ P + L+ G+ E +N YP
Sbjct: 418 NPTSQGEKFDPDGNYIRKWVEELRDVPSKHIHN----PHAYLKQQGMFAEEKAANETYPK 473
Query: 466 PIV 468
PIV
Sbjct: 474 PIV 476
>gi|339050708|ref|ZP_08647576.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC2047]
gi|330722082|gb|EGG99998.1| Deoxyribodipyrimidine photolyase [gamma proteobacterium IMCC2047]
Length = 463
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 154/482 (31%), Positives = 240/482 (49%), Gaps = 28/482 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VW R DLR++DNPAL A A V AV+I P++ + + +L+ L S
Sbjct: 3 LVWLRNDLRLDDNPALYAACHGTAPVRAVYIATPKQWLQHDESAAKLGFRSAALTDLKSK 62
Query: 67 LRSLGTS---LVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L LG L +D L + + T L+FN + RD++ + LTA
Sbjct: 63 LAELGIGFELLQASYFSDIADLLADYCQRHAVTDLYFNREFPLHEQDRDNQVCQRLTALN 122
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPD-APLLPPKRINSGDMSR 182
I + NADLL + + QGQP+ F +++ L + D PL PK + S S
Sbjct: 123 INCHTSNADLLICA-PIQNLQGQPYKVFTPWYKAWLKQLNNQDNTPLTAPKAVGSALNS- 180
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
P++ E S A W +A + L F L YS R TS
Sbjct: 181 -PNN----EHVKLPNSGAFRDDLWPASEQDALQHLAQFCQRRLHHYSDTRDFPAINGTST 235
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LSP+L G VS R+ L+ I+Q ++ + D + +L+ +G RE+ RY+ + P+
Sbjct: 236 LSPYLASGLVSPRRC--LMAIQQTAF----EQGWDWRESAWLRELGWREFYRYLMISFPH 289
Query: 303 -SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
SH +P + + W + AW+ G TG+P++DA MR+L +T W+H+R+R++V+SF
Sbjct: 290 ISHGKPFKTTPQQWPWRENPALLSAWQTGNTGFPIIDAAMRQLVSTSWMHNRLRMLVASF 349
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K++ + WR G ++F L+D D S+ GWQ+ + T D + RI NP + KFD
Sbjct: 350 LCKLMLIDWREGERFFMQQLIDGDFTSNNGGWQWSASTGCDASPWFRIFNPTTQSQKFDA 409
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
G+++R++LPELA L + IH+P N ++ Q G YP PI+ A+ R AL
Sbjct: 410 EGKFIRKFLPELAELDNKQIHNPSN---TLRQKLG------YPDPIIDYKTARERAISAL 460
Query: 482 SE 483
++
Sbjct: 461 NK 462
>gi|297579803|ref|ZP_06941730.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC385]
gi|297535449|gb|EFH74283.1| deoxyribodipyrimidine photolyase [Vibrio cholerae RC385]
Length = 469
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 148/459 (32%), Positives = 231/459 (50%), Gaps = 20/459 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFRRDLR DN AL A + +G V A++I PE+ ++ + + L+ L
Sbjct: 3 LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQE 62
Query: 67 LRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L +L L ++ D + ++ +V K ATQ+ N Y+ RD A++ L+ QG
Sbjct: 63 LAALNVPLFYQQVADFQAAAVAVSQVAKTLNATQVLANRDYELDEQQRDQSAQQLLSEQG 122
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I +F+ + P V QG+ F F F L++ F P P++ R +
Sbjct: 123 ITWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTL-FQP--PVIGKNR--PAALWDV 177
Query: 184 PSDT--LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
PS LV+ E + + W+ + L F + +Y + R TS
Sbjct: 178 PSALAELVWHPEQTFDYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGTS 237
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+L G +S R+ + R+ S E + E ++L + RE+ +++ P
Sbjct: 238 SLSPYLAIGVLSARQC--VARLYHESSMGELS----EGAQVWLSELIWREFYQHLVAIEP 291
Query: 302 -YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
S R + W D F+ W +G+TGYP+VDA MR+L TGW+H+R+R++V+S
Sbjct: 292 NLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVAS 351
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP +G KFD
Sbjct: 352 FLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFD 411
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAP--ESVLQAAGI 457
PNG+++RRW+PEL + + +IH PW P SVL A +
Sbjct: 412 PNGDFIRRWVPELRSVSSAYIHQPWTYPAVNSVLYPARL 450
>gi|153947154|ref|YP_001400093.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
31758]
gi|152958649|gb|ABS46110.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
31758]
Length = 487
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 150/479 (31%), Positives = 230/479 (48%), Gaps = 30/479 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR DLRV DN AL A + +VIAVFI P + + +L+ +L HL +
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHVMAPRQAAFLRQNLQHLQA 64
Query: 66 SLRSLGTSLVTKRSTDSVSS---LLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L + G L + D +S L++ + LF++ Y+ +RD L+ +
Sbjct: 65 ALSARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQLSER 124
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLP-PKRINSGDMS 181
I +SF+ +L P V + + F F + D +P PK ++ +
Sbjct: 125 AITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHAPPVL 184
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
P L F+ + + L G A + L F + +Y + R TS
Sbjct: 185 LSP---LPFDYPQQSVDSQLF----PAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTS 237
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWAN--EGNKAGDESVNLFLKSIGLREYSRYMSFN 299
LSP+L G +S R+ F+ + WA E + D +L + RE+ R++
Sbjct: 238 CLSPYLVLGVLSPRQCFNRL------WAESPEMLENADSGAFTWLNELIWREFYRHLLVA 291
Query: 300 HP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
+P P +G W E KAW+QG+TGYP+VDA MR++ TGW+H+R+R++
Sbjct: 292 YPRLCQHHPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMIS 351
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +G +
Sbjct: 352 ASFLVKDLLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGER 411
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
FD +G ++RRWLPELA +P IH PW E Q +YP P+V D + RL
Sbjct: 412 FDKDGVFIRRWLPELAAVPDSDIHQPWRWAERQQQHL------DYPVPLV--DHKQARL 462
>gi|428178658|gb|EKX47532.1| hypothetical protein GUITHDRAFT_137315 [Guillardia theta CCMP2712]
Length = 1209
Score = 212 bits (539), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 156/493 (31%), Positives = 230/493 (46%), Gaps = 53/493 (10%)
Query: 8 IVWFRRDLRVEDNPAL-AAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+V FR DLR+EDNPAL A V+ VF+W PE + R + +D
Sbjct: 726 VVLFRNDLRLEDNPALFHAASLCRPVLPVFVWDPEIGSEHSLERSAAAKSLTDKYGIDII 785
Query: 67 LRSLGTSL-VTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
R + + ++ +L+V+K AT L+ N LY+P +D K + A+G +
Sbjct: 786 FRKVSSKPDAAEQEKSYCRQVLDVMKEAQATALYANRLYEPWLRDQDEEMKCLVEAEGSS 845
Query: 126 VRSFNADLLYEPWDVN-----DAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
V F+A LLY P D+ D +G + T F C S PL PK +
Sbjct: 846 VHLFDASLLYRPEDIAIPPGYDGRGH-WGTLTPFLRAC-SRLPPLRRPLPQPKTLTRARQ 903
Query: 181 SRCP--------SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNR 232
+ C + V D A + +W G A + + FI LI+Y +R
Sbjct: 904 APCSLRLEELEMAKMPVGRDGRMIDWGAGVKSSWKFGEEAAMEEMNKFIKSKLIKYESSR 963
Query: 233 RKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREY 292
+AD S LSP+L FG +S R + V ++S +K+ R +
Sbjct: 964 SRADVPVVSRLSPYLRFGILSPRTLHFAVVDTRLSQDK-------------IKTFSRRLF 1010
Query: 293 SRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHD 352
R +++ H H P + H W DE AW+QGRTG+P+VDAGMREL+ATGW+H
Sbjct: 1011 WRDLAYFH--LHTFPDMSHW----WREDEELLSAWKQGRTGFPMVDAGMRELYATGWMHQ 1064
Query: 353 RIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPD----GRAFDR 408
+R++ +SF + L + W G+++F +TL+D D +A+ WQ + D R
Sbjct: 1065 NVRMIAASFLCEYLCISWVKGLEWFHETLVDLDHAINAMMWQNAGRSGIDQASRSRGGRN 1124
Query: 409 IDNPQFEGYKF-------------DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAA 455
++ Q G DP G YVRRW+PELA+L + IH PW A E L AA
Sbjct: 1125 TESEQSGGRMVQWNFIMSPENGSQDPTGAYVRRWVPELAQLSNKHIHAPWTASEKDLSAA 1184
Query: 456 GIELGSNYPFPIV 468
G++LG YP ++
Sbjct: 1185 GVKLGETYPHRVI 1197
>gi|197287042|ref|YP_002152914.1| deoxyribodipyrimidine photolyase [Proteus mirabilis HI4320]
gi|194684529|emb|CAR46324.1| deoxyribodipyrimidine photolyase [Proteus mirabilis HI4320]
Length = 476
Score = 212 bits (539), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 151/485 (31%), Positives = 229/485 (47%), Gaps = 29/485 (5%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPAL--AAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKH 58
M +VWFR DLRV DN AL A V A+F P + ++ + ++
Sbjct: 1 MHSAPVHLVWFRHDLRVTDNKALFYACQNTQAQVHAIFTVTPAQWKAHHMALSQQAFIHD 60
Query: 59 SLSHLDSSLRSLG---TSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRA 115
+L +L +L L T +++ D+ S+++ + T LFFNH Y RD +
Sbjct: 61 ALLNLSHALAKLNIPLTLIISDTYADAAQSIVDYCQQHQVTALFFNHQYALNEQNRDKKV 120
Query: 116 KEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI 175
E L A V ++ ++ P +V QG+ + F F L + D LP I
Sbjct: 121 ME-LLAHNTTVYCYHDNVFVPPGNVVTQQGEMYKVFTPFRTAFLRLFLSQDNASLPAPEI 179
Query: 176 NSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
+ + P +F + + A + L F +I Y+K R
Sbjct: 180 RAHQKAVSPLSAPLFALPISS------TKMFPASEQAALQRLKQFCYERVIHYAKWRDIP 233
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
TS LSP+L G VSVR+ F+ R+ Q + + S ++ + RE+ ++
Sbjct: 234 AIDGTSQLSPYLAIGLVSVRQCFN--RLYQTE--PDFLENNHSSTFVWFNELVWREFYQH 289
Query: 296 MSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
+ +P S + + W D+ F AW QG TG+P++DA MR+L TGW+H+R+
Sbjct: 290 LIVANPSLSKQIAFQPWTENIRWRNDQTEFTAWTQGLTGFPIIDAAMRQLNQTGWMHNRL 349
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R++ +SF VK L + WRWG YF L+D D S+ GWQ+ + T D + RI NP
Sbjct: 350 RMLTASFLVKDLLIDWRWGENYFMSQLIDGDFASNNGGWQWAASTGTDAVPYFRIFNPTT 409
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGS--NYPFPIVRIDA 472
+G KFDP+GE++R WLPELA +P +IH P I+ G +YP PIV D
Sbjct: 410 QGRKFDPDGEFIRHWLPELADVPDRYIHTP--------SEWAIKTGHYLDYPQPIV--DH 459
Query: 473 AKCRL 477
AK R+
Sbjct: 460 AKARV 464
>gi|119899747|ref|YP_934960.1| deoxyribodipyrimidine photo-lyase [Azoarcus sp. BH72]
gi|119672160|emb|CAL96074.1| deoxyribodipyrimidine photo-lyase [Azoarcus sp. BH72]
Length = 503
Score = 212 bits (539), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 142/482 (29%), Positives = 238/482 (49%), Gaps = 44/482 (9%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRW--WLKHSLSHLD 64
++VWFRRDLR D+ AL +R + + P R R ++ ++ LD
Sbjct: 27 ALVWFRRDLRCVDHAALYHALREHERVYCAFVFDTDILDALPTRADRRVEFIHAAVVELD 86
Query: 65 SSLRSL-------GTSLVTK--RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRA 115
+L +L G+ L+ + R+ +++ +L +A G ++ N Y+P ++ RD
Sbjct: 87 RALEALSREAGGSGSGLIVRHGRAQEAIPAL---AQALGVDAVYVNRDYEPAAIARDRAV 143
Query: 116 KEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL------SMPFDPD 166
E L G +R F ++++ +V GQPF+ F + W + L + P P
Sbjct: 144 AERLAEHGRTLRDFKDQVIFDRDEVLTQAGQPFSVFTPYKNAWLRKLDPFYLQAYPIAPR 203
Query: 167 APLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLI 226
A L PK G P+ + + ++ AL P ++ +AL G +
Sbjct: 204 ARRLAPKPAGEG----VPALGRIGFEPTDLRGLAL------PTGASGARALFGDFCGRIE 253
Query: 227 EYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKS 286
+Y R S+LS HL FG + VR++ ++A AG ++ +L
Sbjct: 254 DYRIARDFPAVKGVSYLSTHLRFGTIPVREL--------AAYAVHQGGAGAQT---WLSE 302
Query: 287 IGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWA 346
+ R++ + + ++HP ++ W F AWR+GRTGYP+VDAGMR+L
Sbjct: 303 LIWRDFYQMILWHHPRVVDQAFRPEFDRIRWDDAPALFDAWREGRTGYPIVDAGMRQLLR 362
Query: 347 TGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAF 406
+G++H+R+R++V+SF K L + WR G ++F L D DL ++ GWQ+ + T D + +
Sbjct: 363 SGYMHNRLRMIVASFLTKDLGVDWRLGERHFAAHLNDYDLAANNGGWQWAASTGCDAQPY 422
Query: 407 DRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFP 466
RI NP + KFDP G ++RR++PELAR+P IH PW + A +++G +YP P
Sbjct: 423 FRIFNPVTQSQKFDPEGRFIRRYVPELARVPDRHIHAPWQMDAATQSRACVQIGRDYPAP 482
Query: 467 IV 468
+V
Sbjct: 483 VV 484
>gi|270263757|ref|ZP_06192026.1| deoxyribodipyrimidine photolyase [Serratia odorifera 4Rx13]
gi|270042641|gb|EFA15736.1| deoxyribodipyrimidine photolyase [Serratia odorifera 4Rx13]
Length = 476
Score = 212 bits (539), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 150/478 (31%), Positives = 230/478 (48%), Gaps = 26/478 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VW R DLR+ DN AL A A V+AVFI P + + ++ +L +
Sbjct: 5 LVWLRNDLRITDNKALHAACCDPAARVLAVFIATPGQWRQHEMAPRQAAFIHANLLQVQQ 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L G LV + D +V L+ LF+N Y+ L RD +A+ L+ Q
Sbjct: 65 ALADRGIPLVCHQCDDFSAAVDWLVAYCAQERVNALFYNRQYEINELKRDQQAQRRLSGQ 124
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLP-PKRINSGDMS 181
I +SF+ LL P V G+ + + F + + + D LP PKR G +
Sbjct: 125 VI-CQSFDDSLLLPPGSVQTGGGEMYKIYTPFRKAFIQRLTESDVRSLPAPKRREGGALP 183
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
+ + E G++ + G A K L F + +Y + R A TS
Sbjct: 184 VSVAPAAFDYPQVEAGAD------FPAGEDAALKRLRAFCREQVQDYLQQRDFPAIAGTS 237
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+L G +S R+ F+ +R + + + D +L + RE+ R++ +P
Sbjct: 238 SLSPYLAIGVLSPRQCFNRLRAE----CPQVLENSDSGAFGWLNELIWREFYRHLMVAYP 293
Query: 302 -YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
RP + W ++ AW++G TGYP+VDA MR+L TGW+H+R+R++ +S
Sbjct: 294 ALCRHRPFIEWTDRVRWRNNDALLLAWQKGATGYPIVDAAMRQLNKTGWMHNRLRMISAS 353
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F VK L + WR G +YF LLD DL ++ GWQ+ + T D + RI NP +G +FD
Sbjct: 354 FLVKDLLIDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFD 413
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
P G ++R+WLPELA +P +H P L A + +YP PIV D + RL+
Sbjct: 414 PQGTFIRKWLPELADVPDNALHQP------HLWAEKQQRTLDYPLPIV--DHKQARLE 463
>gi|51597229|ref|YP_071420.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis IP
32953]
gi|51590511|emb|CAH22151.1| putative deoxyribodipyrimidine photolyase [Yersinia
pseudotuberculosis IP 32953]
Length = 487
Score = 212 bits (539), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 150/479 (31%), Positives = 230/479 (48%), Gaps = 30/479 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR DLRV DN AL A + +VIAVFI P + + +L+ +L HL +
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQHLQA 64
Query: 66 SLRSLGTSLVTKRSTDSVSS---LLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L + G L + D +S L++ + LF++ Y+ +RD L+ +
Sbjct: 65 ALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQLSGR 124
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLP-PKRINSGDMS 181
I +SF+ +L P V + + F F + D +P PK ++ +
Sbjct: 125 AITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHAPPVL 184
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
P L F+ + + L G A + L F + +Y + R TS
Sbjct: 185 LSP---LPFDYPQQSVDSQLF----PAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTS 237
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWAN--EGNKAGDESVNLFLKSIGLREYSRYMSFN 299
LSP+L G +S R+ F+ + WA E + D +L + RE+ R++
Sbjct: 238 CLSPYLVLGVLSPRQCFNRL------WAESPEMLENADSGAFTWLNELIWREFYRHLLVA 291
Query: 300 HP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
+P P +G W E KAW+QG+TGYP+VDA MR++ TGW+H+R+R++
Sbjct: 292 YPRLCQHHPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMIS 351
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +G +
Sbjct: 352 ASFLVKDLLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGER 411
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
FD +G ++RRWLPELA +P IH PW E Q +YP P+V D + RL
Sbjct: 412 FDKDGVFIRRWLPELAAVPDSDIHQPWRWAERQQQHL------DYPVPLV--DHKQARL 462
>gi|422369015|ref|ZP_16449418.1| FAD binding domain of DNA photolyase [Escherichia coli MS 16-3]
gi|432897527|ref|ZP_20108436.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE192]
gi|433027697|ref|ZP_20215572.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE109]
gi|315299251|gb|EFU58505.1| FAD binding domain of DNA photolyase [Escherichia coli MS 16-3]
gi|431429573|gb|ELH11501.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE192]
gi|431545767|gb|ELI20414.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE109]
Length = 472
Score = 212 bits (539), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 151/487 (31%), Positives = 235/487 (48%), Gaps = 35/487 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR DN ALAA R + V+A++I P + + + L+ L +
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLNALQN 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L G L+ + D SV ++ +V T LF+N+ Y+ RD +A+ L +
Sbjct: 65 ALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERTL--R 122
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRINS 177
+ F+ ++ P V + + F +F W K L MP + PK +S
Sbjct: 123 NVVCEGFDDSVILPPGAVMTGNHEMYKVFTSFKNAWLKRLREGMP----ECVAAPKVRSS 178
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
G + PS TL + +S ++ + A L F EY + R
Sbjct: 179 GSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAV 232
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
TS LS L G +S R+ H + +Q G + ++L + RE+ R++
Sbjct: 233 EGTSRLSASLATGGLSPRQCLHRLLAEQPQVLEGGPGS------VWLNELIWREFYRHLM 286
Query: 298 FNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
+P RP + W + + KAW++G+TGYP+VDA MR+L +TGW+H+R+R+
Sbjct: 287 TYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +G
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFD GE++R+WLPEL +P + +H PW E G+ L +YP PIV A+ R
Sbjct: 407 EKFDREGEFIRQWLPELRDVPGKAVHEPWKWAEKT----GVTL--DYPQPIVDHKEARLR 460
Query: 477 LDEALSE 483
A E
Sbjct: 461 TLAAYEE 467
>gi|238898396|ref|YP_002924077.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|229466155|gb|ACQ67929.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 484
Score = 212 bits (539), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 148/473 (31%), Positives = 219/473 (46%), Gaps = 22/473 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VW R DLRV DN AL A + V+AVFI P + ++ +L L + +
Sbjct: 5 LVWLRHDLRVTDNRALNAACQHSEAKVLAVFIATPIQWKTHHMAPRQAAFLLAHLKAVQA 64
Query: 66 SLRSLGTSLVTKRS---TDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L L L D+V L++ +LF+NH Y+ RDH ++ L+ Q
Sbjct: 65 RLAELNIPLHYHECDDFQDAVKWLIDFCDHHKVDKLFYNHQYEINESRRDHALEKKLSHQ 124
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
I + F+ +L P V GQ + F F L F + +P + G
Sbjct: 125 VIC-QGFHDAVLLPPEKVLKENGQMYQVFTPFRRAFLKQLFLTNLSCIPVPKKRDGPQVS 183
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
L F+ L G + A K LT F + + YS R TS
Sbjct: 184 ISLTELSFDYPLLDFDTELF----PIGEAAAQKQLTRFCDAKVSAYSHARDMLAIKGTSG 239
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP- 301
LSP+L G +S R+ +R + A D +L + R++ R++ +P
Sbjct: 240 LSPYLTLGILSPRQCLGCLREAFPEGIEDHKGAFD-----WLNELIWRDFYRHLLIAYPR 294
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
S P +G F W + + W+QG+TGYP+VDA MR+L TGW+H+R+R++ +SF
Sbjct: 295 LSKGHPFIGWTTFVQWHHSDSLLEKWQQGQTGYPIVDAAMRQLNTTGWMHNRLRMITASF 354
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +G +FDP
Sbjct: 355 LVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDP 414
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
GE++R WLPEL +P IH PW+ E + +YP PIV A+
Sbjct: 415 KGEFIRHWLPELNPVPESEIHQPWSWAEKNHKQL------DYPTPIVDHQQAR 461
>gi|209917958|ref|YP_002292042.1| deoxyribodipyrimidine photolyase [Escherichia coli SE11]
gi|293432976|ref|ZP_06661404.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B088]
gi|300823005|ref|ZP_07103140.1| FAD binding domain of DNA photolyase [Escherichia coli MS 119-7]
gi|331667072|ref|ZP_08367937.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
TA271]
gi|331676388|ref|ZP_08377085.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
H591]
gi|417224714|ref|ZP_12028005.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.154]
gi|417268307|ref|ZP_12055668.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.3884]
gi|417601042|ref|ZP_12251624.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_94C]
gi|418042784|ref|ZP_12680971.1| FAD binding domain of DNA photolyase [Escherichia coli W26]
gi|419390104|ref|ZP_13930941.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15A]
gi|419395276|ref|ZP_13936059.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15B]
gi|419400630|ref|ZP_13941361.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15C]
gi|419405803|ref|ZP_13946505.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15D]
gi|419411294|ref|ZP_13951965.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15E]
gi|419952321|ref|ZP_14468492.1| deoxyribodipyrimidine photolyase [Escherichia coli CUMT8]
gi|422351612|ref|ZP_16432424.1| FAD binding domain of DNA photolyase [Escherichia coli MS 117-3]
gi|423708633|ref|ZP_17683011.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B799]
gi|432375819|ref|ZP_19618828.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE12]
gi|432480087|ref|ZP_19722050.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE210]
gi|432830684|ref|ZP_20064268.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE135]
gi|432833730|ref|ZP_20067273.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE136]
gi|432966809|ref|ZP_20155726.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE203]
gi|209911217|dbj|BAG76291.1| deoxyribodipyrimidine photolyase [Escherichia coli SE11]
gi|291323795|gb|EFE63217.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B088]
gi|300524546|gb|EFK45615.1| FAD binding domain of DNA photolyase [Escherichia coli MS 119-7]
gi|324020349|gb|EGB89568.1| FAD binding domain of DNA photolyase [Escherichia coli MS 117-3]
gi|331065428|gb|EGI37321.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
TA271]
gi|331075881|gb|EGI47178.1| deoxyribodipyrimidine photo-lyase (DNA
photolyase)(Photoreactivating enzyme) [Escherichia coli
H591]
gi|345353048|gb|EGW85284.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_94C]
gi|378242867|gb|EHY02815.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15A]
gi|378250753|gb|EHY10656.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15B]
gi|378250935|gb|EHY10836.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15C]
gi|378257086|gb|EHY16928.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15D]
gi|378260971|gb|EHY20768.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC15E]
gi|383474279|gb|EID66271.1| FAD binding domain of DNA photolyase [Escherichia coli W26]
gi|385707354|gb|EIG44385.1| deoxyribodipyrimidine photo-lyase [Escherichia coli B799]
gi|386199762|gb|EIH98753.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 96.154]
gi|386230665|gb|EII58020.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.3884]
gi|388412776|gb|EIL72813.1| deoxyribodipyrimidine photolyase [Escherichia coli CUMT8]
gi|430900924|gb|ELC22938.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE12]
gi|431009754|gb|ELD24364.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE210]
gi|431379712|gb|ELG64637.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE135]
gi|431387713|gb|ELG71535.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE136]
gi|431474001|gb|ELH53824.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE203]
Length = 472
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 241/488 (49%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F +Y + R
Sbjct: 178 SGSIEPSPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGDYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P RP + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW Q AG++L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVKL--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|170023409|ref|YP_001719914.1| deoxyribodipyrimidine photolyase [Yersinia pseudotuberculosis
YPIII]
gi|169749943|gb|ACA67461.1| Deoxyribodipyrimidine photo-lyase [Yersinia pseudotuberculosis
YPIII]
Length = 487
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 150/479 (31%), Positives = 230/479 (48%), Gaps = 30/479 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR DLRV DN AL A + +VIAVFI P + + +L+ +L HL +
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWATHGMAPRQAAFLRQNLQHLQA 64
Query: 66 SLRSLGTSLVTKRSTDSVSS---LLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L + G L + D +S L++ + LF++ Y+ +RD L+ +
Sbjct: 65 ALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQLSGR 124
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLP-PKRINSGDMS 181
I +SF+ +L P V + + F F + D +P PK ++ +
Sbjct: 125 AITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHAPPVL 184
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
P L F+ + + L G A + L F + +Y + R TS
Sbjct: 185 LSP---LPFDYPQQSVDSQLF----PAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTS 237
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWAN--EGNKAGDESVNLFLKSIGLREYSRYMSFN 299
LSP+L G +S R+ F+ + WA E + D +L + RE+ R++
Sbjct: 238 CLSPYLVLGVLSPRQCFNRL------WAESPEMLENADSGAFTWLNELIWREFYRHLLVA 291
Query: 300 HP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
+P P +G W E KAW+QG+TGYP+VDA MR++ TGW+H+R+R++
Sbjct: 292 YPRLCQHHPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMIS 351
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +G +
Sbjct: 352 ASFLVKDLLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGER 411
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
FD +G ++RRWLPELA +P IH PW E Q +YP P+V D + RL
Sbjct: 412 FDKDGVFIRRWLPELAAVPDSDIHQPWRWAERQQQHL------DYPVPLV--DHKQARL 462
>gi|218549732|ref|YP_002383523.1| deoxyribodipyrimidine photolyase [Escherichia fergusonii ATCC
35469]
gi|218357273|emb|CAQ89908.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia
fergusonii ATCC 35469]
Length = 472
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 239/488 (48%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A+ I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALNIATPRQWAAHNMSPRQAELINAQLNGLRI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENRVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIETAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGRLSPRQCLHRLLAEQPQALDGG--AG----SVWLNELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P RP + W + + KAW++G+TGYP+VDA MR+L ++GW+H+R+R
Sbjct: 286 MTYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSSGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++R+WLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 406 GEKFDHEGEFIRQWLPELRDVPGKAVHEPWKWA----QKAGVTL--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|218699057|ref|YP_002406686.1| deoxyribodipyrimidine photolyase [Escherichia coli IAI39]
gi|386623078|ref|YP_006142806.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia
coli O7:K1 str. CE10]
gi|218369043|emb|CAR16797.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
IAI39]
gi|349736816|gb|AEQ11522.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia
coli O7:K1 str. CE10]
Length = 472
Score = 211 bits (538), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 159/499 (31%), Positives = 242/499 (48%), Gaps = 59/499 (11%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAV--IAVFIWAPEEEGPYYPGRVSRWWLKHSLS---- 61
+VWFR+DLR DN ALAA R +V +A++I P R W H++S
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSVRVLALYIATP------------RQWAAHNMSPRQA 52
Query: 62 -HLDSSLRSLGTSLVTK------RSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLV 110
+++ L L +L K D ++ +E+VK A T LF+N+ Y+
Sbjct: 53 EFINAQLNGLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERA 112
Query: 111 RDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDP 165
RD +A+ AL + + F+ ++ P V + + F F W K L MP
Sbjct: 113 RDVQAERAL--RNVVCEGFDDGVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP--- 167
Query: 166 DAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPL 225
+ PK +SG + PS TL + + ++ + A L F
Sbjct: 168 -ECVAAPKVRSSGSIDPAPSITLNYPRQPFDTAHFPVEE------KAAIAQLRQFCQNGA 220
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
EY + R TS LS L G +S R+ H + +Q + G AG +++L
Sbjct: 221 GEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLN 274
Query: 286 SIGLREYSRYMSFNHPY-SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMREL 344
+ RE+ R++ +P RP + W + +FKAW++G+TGYP+VDA MR+L
Sbjct: 275 ELIWREFYRHLMTYYPLLCKHRPFIVWTDRVQWQRNPAHFKAWQEGKTGYPIVDAAMRQL 334
Query: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 404
+TGW+H+R+R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 405 AFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
+ RI NP +G KFD GE++R+WLPEL +P + +H PW Q AG+ L +YP
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGVTL--DYP 448
Query: 465 FPIVRIDAAKCRLDEALSE 483
PIV A+ R A E
Sbjct: 449 QPIVDHKEARLRTLAAYEE 467
>gi|432615535|ref|ZP_19851663.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE75]
gi|431156919|gb|ELE57580.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE75]
Length = 472
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 158/499 (31%), Positives = 242/499 (48%), Gaps = 59/499 (11%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLS---- 61
+VWFR+DLR DN ALAA R + +V+A++I P R W H++S
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSASVLALYIATP------------RQWAAHNMSPRQA 52
Query: 62 -HLDSSLRSLGTSLVTK------RSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLV 110
+++ L L +L K D ++ +E+VK A T LF+N+ Y+
Sbjct: 53 EFINAQLNGLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERA 112
Query: 111 RDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDP 165
RD +A+ AL + + F+ ++ P V + + F F W K L MP
Sbjct: 113 RDVQAERAL--RNVVCEGFDDGVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP--- 167
Query: 166 DAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPL 225
+ PK +SG + PS TL + + ++ + A L F
Sbjct: 168 -ECVAAPKVRSSGSIDPAPSITLNYPRQPFDTAHFPVEE------KAAIAQLRQFCQNGA 220
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
EY + R TS LS L G +S R+ H + +Q + G AG +++L
Sbjct: 221 GEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SIWLN 274
Query: 286 SIGLREYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMREL 344
+ RE+ R++ +P RP + W + + KAW++G+TGYP+VDA MR+L
Sbjct: 275 ELIWREFYRHLITYYPSLCKHRPFIVWTDRVQWQSNSAHLKAWQEGKTGYPIVDAAMRQL 334
Query: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 404
+TGW+H+R+R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 405 AFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
+ RI NP +G KFD GE++R+WLPEL +P + +H PW Q AG+ L +YP
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGVTL--DYP 448
Query: 465 FPIVRIDAAKCRLDEALSE 483
PIV A+ R A E
Sbjct: 449 QPIVDHKEARLRTLAAYEE 467
>gi|134095905|ref|YP_001100980.1| deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans]
gi|133739808|emb|CAL62859.1| Deoxyribodipyrimidine photolyase [Herminiimonas arsenicoxydans]
Length = 493
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 157/490 (32%), Positives = 247/490 (50%), Gaps = 39/490 (7%)
Query: 7 SIVWFRRDLRVEDNPALA-AGVRAGAVIAVFIW--APEEEGPYYPGRVSRWWLKHSLSHL 63
++VWFRRDLR D+ AL A ++ V VFI+ A + P RV ++ SL L
Sbjct: 7 TLVWFRRDLRSVDHAALHHALAQSRQVYCVFIFDRAILDALPRADRRVE--FIHASLLEL 64
Query: 64 DSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
+LR+LG L+ + + + +++ E+ G +F NH Y+P ++ RD AL A G
Sbjct: 65 AQALRALGGGLIVQHAW-AETAIPELAIELGVDAVFANHDYEPQAITRDAHVAAALQAAG 123
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSM--------PFDPDAPLLPP 172
++ +F +++E +V +PF+ F + W K L P++ DA
Sbjct: 124 RSLHTFKDQVVFEKNEVLTQAEKPFSVFTPYKNAWLKKLYAESNEATLRPYEIDAY---A 180
Query: 173 KRINSGDMSRCPSDTLV---FEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYS 229
R + S+ P +L FE + N G A L F + + Y
Sbjct: 181 DRFVNLPESKFPIPSLTDLGFEKTNLPDLNI------PTGMQGAQDLLDAFAD-RMQRYD 233
Query: 230 KNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGL 289
+ R S+LS H+ FG VS+R + + + GN A ++L +
Sbjct: 234 QTRDFPALKGPSYLSVHVRFGTVSIRALARRA-LDAMRTGTGGNGAA-----VWLSELVW 287
Query: 290 REYSRYMSFNHPYSHERPLLGHLKFFSWVVDEG---YFKAWRQGRTGYPLVDAGMRELWA 346
R++ + F HP+ + +W + F+AW G+TGYPLVDA M +L
Sbjct: 288 RDFYFMILFQHPHVVDHAFKADYDAITWESGDHARRLFQAWCDGQTGYPLVDAAMAQLNQ 347
Query: 347 TGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAF 406
TG++H+R+R+V +SF +K L + WRWG YF + L D DL ++ GWQ+ S + D + +
Sbjct: 348 TGYMHNRLRMVTASFLIKDLGIDWRWGEHYFAEKLNDFDLAANNGGWQWASSSGCDAQPY 407
Query: 407 DRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFP 466
RI NP + KFD G+++RR+LP+LA+L IH PW AP L+ AG+E+G+NYP P
Sbjct: 408 FRIFNPITQSEKFDQQGKFIRRYLPQLAKLSDRHIHAPWCAPALELRMAGVEIGNNYPGP 467
Query: 467 IVRIDAAKCR 476
+V+ D A+ R
Sbjct: 468 LVQHDEARAR 477
>gi|170020947|ref|YP_001725901.1| deoxyribodipyrimidine photolyase [Escherichia coli ATCC 8739]
gi|169755875|gb|ACA78574.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli ATCC 8739]
Length = 472
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 239/488 (48%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P P + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVML--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|157154932|ref|YP_001461868.1| deoxyribodipyrimidine photolyase [Escherichia coli E24377A]
gi|218553235|ref|YP_002386148.1| deoxyribodipyrimidine photolyase [Escherichia coli IAI1]
gi|218694131|ref|YP_002401798.1| deoxyribodipyrimidine photolyase [Escherichia coli 55989]
gi|300926110|ref|ZP_07141923.1| FAD binding domain of DNA photolyase [Escherichia coli MS 182-1]
gi|301327896|ref|ZP_07221069.1| FAD binding domain of DNA photolyase [Escherichia coli MS 78-1]
gi|332282445|ref|ZP_08394858.1| deoxyribodipyrimidine photolyase [Shigella sp. D9]
gi|407468122|ref|YP_006785436.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407483147|ref|YP_006780296.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
2011C-3493]
gi|410483700|ref|YP_006771246.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
2009EL-2050]
gi|415827891|ref|ZP_11514660.1| deoxyribodipyrimidine photo-lyase [Escherichia coli OK1357]
gi|417135783|ref|ZP_11980568.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 5.0588]
gi|417144606|ref|ZP_11986412.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1.2264]
gi|417804024|ref|ZP_12451058.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
LB226692]
gi|417831779|ref|ZP_12478300.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
01-09591]
gi|417863934|ref|ZP_12508981.1| hypothetical protein C22711_0867 [Escherichia coli O104:H4 str.
C227-11]
gi|419276924|ref|ZP_13819185.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10E]
gi|419374372|ref|ZP_13915423.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC14B]
gi|419379648|ref|ZP_13920624.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC14C]
gi|419384859|ref|ZP_13925758.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC14D]
gi|422959160|ref|ZP_16971091.1| deoxyribodipyrimidine photo-lyase [Escherichia coli H494]
gi|422991385|ref|ZP_16982156.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
C227-11]
gi|422993327|ref|ZP_16984091.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
C236-11]
gi|422998537|ref|ZP_16989293.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
09-7901]
gi|423006999|ref|ZP_16997742.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
04-8351]
gi|423008645|ref|ZP_16999383.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-3677]
gi|423022833|ref|ZP_17013536.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4404]
gi|423027985|ref|ZP_17018678.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4522]
gi|423033819|ref|ZP_17024503.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4623]
gi|423036686|ref|ZP_17027360.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423041804|ref|ZP_17032471.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423048493|ref|ZP_17039150.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423052076|ref|ZP_17040884.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423059042|ref|ZP_17047838.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C5]
gi|429722875|ref|ZP_19257766.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429775046|ref|ZP_19307047.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02030]
gi|429780233|ref|ZP_19312185.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02033-1]
gi|429784283|ref|ZP_19316196.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02092]
gi|429789621|ref|ZP_19321496.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02093]
gi|429795851|ref|ZP_19327677.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02281]
gi|429801779|ref|ZP_19333556.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02318]
gi|429805411|ref|ZP_19337157.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02913]
gi|429810220|ref|ZP_19341922.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-03439]
gi|429815980|ref|ZP_19347639.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-04080]
gi|429821568|ref|ZP_19353181.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-03943]
gi|429907241|ref|ZP_19373209.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429911437|ref|ZP_19377393.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429917275|ref|ZP_19383215.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429922313|ref|ZP_19388234.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429923166|ref|ZP_19389082.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429932061|ref|ZP_19397955.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429933662|ref|ZP_19399552.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429939321|ref|ZP_19405195.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429946963|ref|ZP_19412818.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429949595|ref|ZP_19415443.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429957875|ref|ZP_19423704.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432764032|ref|ZP_19998481.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE48]
gi|432880293|ref|ZP_20096984.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE154]
gi|450212067|ref|ZP_21894440.1| deoxyribodipyrimidine photolyase [Escherichia coli O08]
gi|157076962|gb|ABV16670.1| deoxyribodipyrimidine photolyase [Escherichia coli E24377A]
gi|218350863|emb|CAU96561.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
55989]
gi|218360003|emb|CAQ97550.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
IAI1]
gi|300417809|gb|EFK01120.1| FAD binding domain of DNA photolyase [Escherichia coli MS 182-1]
gi|300845580|gb|EFK73340.1| FAD binding domain of DNA photolyase [Escherichia coli MS 78-1]
gi|323185134|gb|EFZ70500.1| deoxyribodipyrimidine photo-lyase [Escherichia coli OK1357]
gi|332104797|gb|EGJ08143.1| deoxyribodipyrimidine photolyase [Shigella sp. D9]
gi|340735435|gb|EGR64492.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
01-09591]
gi|340741430|gb|EGR75577.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
LB226692]
gi|341917223|gb|EGT66839.1| hypothetical protein C22711_0867 [Escherichia coli O104:H4 str.
C227-11]
gi|354856387|gb|EHF16845.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
04-8351]
gi|354857634|gb|EHF18087.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
C227-11]
gi|354864402|gb|EHF24831.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
C236-11]
gi|354874714|gb|EHF35080.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
09-7901]
gi|354878675|gb|EHF39022.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4404]
gi|354882467|gb|EHF42789.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-3677]
gi|354885191|gb|EHF45497.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4522]
gi|354887800|gb|EHF48067.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4623]
gi|354900902|gb|EHF61033.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354904083|gb|EHF64178.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354906540|gb|EHF66615.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354917501|gb|EHF77465.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C5]
gi|354921619|gb|EHF81541.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-4632 C4]
gi|371595434|gb|EHN84284.1| deoxyribodipyrimidine photo-lyase [Escherichia coli H494]
gi|378132093|gb|EHW93445.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10E]
gi|378224435|gb|EHX84637.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC14B]
gi|378233031|gb|EHX93123.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC14C]
gi|378236451|gb|EHX96497.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC14D]
gi|386153637|gb|EIH04926.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 5.0588]
gi|386164489|gb|EIH26275.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 1.2264]
gi|406778862|gb|AFS58286.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407055444|gb|AFS75495.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
2011C-3493]
gi|407064157|gb|AFS85204.1| deoxyribodipyrimidine photolyase [Escherichia coli O104:H4 str.
2009EL-2071]
gi|429350547|gb|EKY87276.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02030]
gi|429351917|gb|EKY88636.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02033-1]
gi|429353245|gb|EKY89954.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02092]
gi|429367158|gb|EKZ03759.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02093]
gi|429368069|gb|EKZ04661.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02281]
gi|429369806|gb|EKZ06380.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02318]
gi|429381851|gb|EKZ18326.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-02913]
gi|429385184|gb|EKZ21638.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-03943]
gi|429385707|gb|EKZ22160.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-03439]
gi|429397400|gb|EKZ33747.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
11-04080]
gi|429398353|gb|EKZ34695.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429398402|gb|EKZ34741.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429409129|gb|EKZ45359.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429417589|gb|EKZ53736.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429421257|gb|EKZ57378.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429422998|gb|EKZ59106.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429426999|gb|EKZ63084.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429434487|gb|EKZ70513.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429439472|gb|EKZ75455.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429443740|gb|EKZ79688.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429450520|gb|EKZ86415.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429456737|gb|EKZ92582.1| deoxyribodipyrimidine photo-lyase [Escherichia coli O104:H4 str.
Ec11-9941]
gi|431312921|gb|ELG00905.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE48]
gi|431413248|gb|ELG96040.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE154]
gi|449322152|gb|EMD12152.1| deoxyribodipyrimidine photolyase [Escherichia coli O08]
Length = 472
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 240/488 (49%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P P + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW Q AG++L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVKL--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|432945847|ref|ZP_20141629.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE196]
gi|433042201|ref|ZP_20229726.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE117]
gi|431462534|gb|ELH42745.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE196]
gi|431559550|gb|ELI33098.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE117]
Length = 472
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 155/492 (31%), Positives = 240/492 (48%), Gaps = 59/492 (11%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLS---- 61
+VWFR+DLR+ DN ALAA R + V+A++I P R W H++S
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATP------------RQWAAHNMSPRQA 52
Query: 62 -HLDSSLRSLGTSLVTK------RSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLV 110
+++ L L +L K R D ++ +E++K A T LF+N+ Y+
Sbjct: 53 ELINAQLNGLQIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERA 112
Query: 111 RDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDP 165
RD + AL + + F+ ++ P V + + F F W K L MP
Sbjct: 113 RDVEVERAL--RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP--- 167
Query: 166 DAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPL 225
+ PK +SG + PS TL + +S ++ + A L F
Sbjct: 168 -ECVAAPKVRSSGSIKPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGA 220
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
EY + R TS LS L G +S R+ H + +Q + G AG +++L
Sbjct: 221 GEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLN 274
Query: 286 SIGLREYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMREL 344
+ RE+ R++ +P RP + W + + KAW++G TGYP+VDA MR+L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGITGYPIVDAAMRQL 334
Query: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 404
+TGW+H+R+R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 405 AFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
+ RI NP +G KFD GE++R+WLPEL +P + +H PW E AG++L +YP
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWAEK----AGVKL--DYP 448
Query: 465 FPIVRIDAAKCR 476
PIV A+ +
Sbjct: 449 QPIVEHKEARVQ 460
>gi|419305250|ref|ZP_13847161.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC11D]
gi|419310306|ref|ZP_13852178.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC11E]
gi|378152384|gb|EHX13481.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC11D]
gi|378160613|gb|EHX21606.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC11E]
Length = 472
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 240/488 (49%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P P + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++++SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MIIASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVML--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|159898493|ref|YP_001544740.1| deoxyribodipyrimidine photo-lyase [Herpetosiphon aurantiacus DSM
785]
gi|159891532|gb|ABX04612.1| Deoxyribodipyrimidine photo-lyase [Herpetosiphon aurantiacus DSM
785]
Length = 486
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 152/484 (31%), Positives = 239/484 (49%), Gaps = 29/484 (5%)
Query: 8 IVWFRRDLRVEDN--PALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
I WFRRDLR+ D+ AA AGAVI VFI Y G L LD
Sbjct: 4 ICWFRRDLRLTDHRALYAAAEASAGAVIPVFILDDTILHDGYVGAALIAVTLAMLEALDH 63
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIA 125
L+ G+ L+ R ++ L +V T A+ +++N Y P ++ RD K L QG+
Sbjct: 64 DLQQRGSRLIV-RHGQPLAELQRLVSETQASGVYWNRDYLPYAIKRDSAVKHWLREQGLQ 122
Query: 126 VRSFNADLLYEPWDVN-DAQGQPFATFAAFWEKCLSMPFDPDAPLLP-PKRINS--GDMS 181
SF+ +L EP + + +P+ + ++ ++ + + L+P P + + D++
Sbjct: 123 AHSFHDSVLVEPEGLKTKTEQKPYVVYGSYVKRWSELAYHQAEQLVPAPSKFVAPPSDLA 182
Query: 182 RCPSDTLV---FEDESEKGSNALLARAWSPGWSNADKALTTFING----PLIEYSKNRRK 234
P +L FE L G + A + L F + +++Y+K R
Sbjct: 183 SLPIPSLADLGFE---------LQQTIPQVGETIAQQRLAQFFDRRQKLSVLKYTKAREV 233
Query: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEG-NKAGDESVNLFLKSIGLREYS 293
A TS LS L G +S+R+ + V E N + V+ +LK + R+Y
Sbjct: 234 PAEAGTSQLSVDLRMGTISIRQCLK----QAVDLLTEPLNAEQRQGVDTWLKELAWRDYY 289
Query: 294 RYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDR 353
+ +++PY L W D F AW+QG+TGYP+VDAG R+L W+H+R
Sbjct: 290 TQLIYHNPYMLNGSLDPRYDQIIWRNDPSEFLAWQQGQTGYPIVDAGQRQLNQMAWMHNR 349
Query: 354 IRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTI-PDGRAFDRIDNP 412
+R++ +SF +K L + WRWG +YF L D D ++ GWQ+ +G+ P + + RI NP
Sbjct: 350 VRMISASFLIKDLLIDWRWGERYFMQQLCDGDPTANNGGWQWAAGSSGPSAQPYFRIFNP 409
Query: 413 QFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDA 472
+ K DP+G+Y+RR++PELA +P +IH PW P +V G +G +YP P+V
Sbjct: 410 IAQSKKHDPDGQYIRRFVPELANVPDHYIHEPWTMPPAVQAHVGCVIGRDYPAPLVEHSF 469
Query: 473 AKCR 476
A+ R
Sbjct: 470 ARER 473
>gi|170769095|ref|ZP_02903548.1| deoxyribodipyrimidine photolyase [Escherichia albertii TW07627]
gi|170122167|gb|EDS91098.1| deoxyribodipyrimidine photolyase [Escherichia albertii TW07627]
Length = 472
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 155/492 (31%), Positives = 239/492 (48%), Gaps = 59/492 (11%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLS---- 61
+VWFR+DLR+ DN ALA R + V+A++I P + W HS+S
Sbjct: 5 LVWFRQDLRLHDNLALAVACRNSSARVLALYIATPCQ------------WAAHSMSPRQA 52
Query: 62 -HLDSSLRSLGTSLVTK------RSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLV 110
+++ L L +L K R D ++ +E+VK A T LF+N+ Y+
Sbjct: 53 EFINAQLNGLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERA 112
Query: 111 RDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDP 165
RD + + AL + + F+ ++ P V + + F F W K L MP
Sbjct: 113 RDVQVERAL--RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP--- 167
Query: 166 DAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPL 225
+ PK +SG + PS TL + +S ++ + A L F +
Sbjct: 168 -ECVAAPKVRSSGSIDPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGV 220
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
+Y + R TS LS L G S R+ H + +Q A EG +++L
Sbjct: 221 GQYEQQRDFPAVEGTSRLSASLATGGGSPRQCLHRLLAEQPQ-ALEGGAG-----SVWLN 274
Query: 286 SIGLREYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMREL 344
+ RE+ R++ +P RP + W + + KAW++G+TGYP+VDA MR+L
Sbjct: 275 ELIWREFYRHLITYYPTLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQL 334
Query: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 404
+TGW+H+R+R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 405 AFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
+ RI NP +G KFD GE++R+WLPEL +P + +H PW Q AG+ L +YP
Sbjct: 395 PYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKAVHEPWKWA----QKAGVRL--DYP 448
Query: 465 FPIVRIDAAKCR 476
PIV A+ R
Sbjct: 449 EPIVDHKEARLR 460
>gi|422791486|ref|ZP_16844189.1| DNA photolyase [Escherichia coli TA007]
gi|323971992|gb|EGB67212.1| DNA photolyase [Escherichia coli TA007]
Length = 472
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 154/481 (32%), Positives = 237/481 (49%), Gaps = 37/481 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPSPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLNELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
HP RP + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 ITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLNDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++R+WLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 406 GEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGVTL--DYPQPIVEHKEARV 459
Query: 476 R 476
+
Sbjct: 460 Q 460
>gi|415814897|ref|ZP_11506495.1| deoxyribodipyrimidine photo-lyase [Escherichia coli LT-68]
gi|323170823|gb|EFZ56473.1| deoxyribodipyrimidine photo-lyase [Escherichia coli LT-68]
Length = 472
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 239/488 (48%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPSPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P P + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVML--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|254824139|ref|ZP_05229140.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J1-194]
gi|254932137|ref|ZP_05265496.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HPB2262]
gi|255521880|ref|ZP_05389117.1| DNA photolyase [Listeria monocytogenes FSL J1-175]
gi|405748953|ref|YP_006672419.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes ATCC
19117]
gi|417316860|ref|ZP_12103492.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J1-220]
gi|424822329|ref|ZP_18247342.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes str. Scott
A]
gi|293583693|gb|EFF95725.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HPB2262]
gi|293593371|gb|EFG01132.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
J1-194]
gi|328475764|gb|EGF46505.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J1-220]
gi|332311009|gb|EGJ24104.1| Deoxyribodipyrimidine photolyase [Listeria monocytogenes str. Scott
A]
gi|404218153|emb|CBY69517.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes ATCC
19117]
Length = 467
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 136/464 (29%), Positives = 229/464 (49%), Gaps = 23/464 (4%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S++WFRRDLRV DN AL + ++ +F P + G S S++H
Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEDDLLLLFQVNP---AQFITGSPSHQAFFASVAHFKQ 58
Query: 66 SL-RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ ++ ++ + L + + + +++FN RD A+ Q I
Sbjct: 59 EIDKTAHLQIMFGEPIECFQQLKDTLPSWD--KVYFNRDETGYGAKRDEAAQAFFDEQKI 116
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V++F+ L+ +V + + + F +++K + + P K + R
Sbjct: 117 EVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKK-----WREEIKETPFKVTLKHENIRKE 171
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
S L +E++ + ++ L G A+ L FI + +Y K R + TS LS
Sbjct: 172 SLFLKYEEQFAEMTSDL--PILDIGERAANTRLANFIKHDVADYDKARDFPELDKTSHLS 229
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
+L GE+S+R ++ + Q + A EG F K + R++ + + P
Sbjct: 230 RYLRTGEISIRTIWQTL---QETEATEGRAT-------FEKELCWRDFYNMIYVSFPNQK 279
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
P+ + +F W + YFKAW++G+TG+PLVDA MR+L TGW+H+R+R++ +SF K
Sbjct: 280 NEPIQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTK 339
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L + WR+G KYF L+D D S+ GWQ+ + T D + RI NP + KFD G+
Sbjct: 340 DLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGK 399
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
++R+++ ELA LP ++IH P E+ + G+ LG +YPFPIV
Sbjct: 400 FIRKYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIV 443
>gi|194439253|ref|ZP_03071333.1| deoxyribodipyrimidine photolyase [Escherichia coli 101-1]
gi|253774322|ref|YP_003037153.1| deoxyribodipyrimidine photolyase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254160778|ref|YP_003043886.1| deoxyribodipyrimidine photolyase [Escherichia coli B str. REL606]
gi|254287566|ref|YP_003053314.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
BL21(DE3)]
gi|300929490|ref|ZP_07144958.1| FAD binding domain of DNA photolyase [Escherichia coli MS 187-1]
gi|387823318|ref|YP_002998501.2| deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia
coli BL21(DE3)]
gi|422785304|ref|ZP_16838043.1| DNA photolyase [Escherichia coli H489]
gi|442599566|ref|ZP_21017284.1| Deoxyribodipyrimidine photolyase [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
gi|194421838|gb|EDX37845.1| deoxyribodipyrimidine photolyase [Escherichia coli 101-1]
gi|253325366|gb|ACT29968.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972679|gb|ACT38350.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli B
str. REL606]
gi|253976873|gb|ACT42543.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
BL21(DE3)]
gi|300462599|gb|EFK26092.1| FAD binding domain of DNA photolyase [Escherichia coli MS 187-1]
gi|313848579|emb|CAQ31174.2| deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia
coli BL21(DE3)]
gi|323963088|gb|EGB58658.1| DNA photolyase [Escherichia coli H489]
gi|441651836|emb|CCQ02781.1| Deoxyribodipyrimidine photolyase [Escherichia coli O5:K4(L):H4 str.
ATCC 23502]
Length = 473
Score = 211 bits (538), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 239/488 (48%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P P + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVML--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|419924461|ref|ZP_14442350.1| deoxyribodipyrimidine photolyase [Escherichia coli 541-15]
gi|388389960|gb|EIL51464.1| deoxyribodipyrimidine photolyase [Escherichia coli 541-15]
Length = 472
Score = 211 bits (538), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 155/492 (31%), Positives = 241/492 (48%), Gaps = 59/492 (11%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLS---- 61
+VWFR+DLR+ DN ALAA R + V+A++I P R W H++S
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATP------------RQWATHNMSPRQA 52
Query: 62 -HLDSSLRSLGTSLVTK------RSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLV 110
+++ L L +L K R D ++ +E++K A T LF+N+ Y+
Sbjct: 53 ELINAQLNGLQIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERA 112
Query: 111 RDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDP 165
RD + AL + + F+ ++ P V + + F F W K L MP
Sbjct: 113 RDVDVERAL--RNVLCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP--- 167
Query: 166 DAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPL 225
+ PK +SG + PS TL + +S ++ + A L F
Sbjct: 168 -ECVAAPKVRSSGSIKPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCENGA 220
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
EY + R TS LS L G +S R+ H + +Q + G AG +++L
Sbjct: 221 GEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLS 274
Query: 286 SIGLREYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMREL 344
+ RE+ R++ +P RP + W + + +AW++G+TGYP+VDA MR+L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQL 334
Query: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 404
+TGW+H+R+R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 405 AFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
+ RI NP +G KFD GE++RRWLPEL +P + +H PW Q AG++L +YP
Sbjct: 395 PYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVKL--DYP 448
Query: 465 FPIVRIDAAKCR 476
PIV A+ +
Sbjct: 449 QPIVEHKEARVQ 460
>gi|22125169|ref|NP_668592.1| deoxyribodipyrimidine photolyase [Yersinia pestis KIM10+]
gi|45442282|ref|NP_993821.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Microtus
str. 91001]
gi|108811346|ref|YP_647113.1| deoxyribodipyrimidine photolyase [Yersinia pestis Nepal516]
gi|149365412|ref|ZP_01887447.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis
CA88-4125]
gi|162421421|ref|YP_001607911.1| deoxyribodipyrimidine photolyase [Yersinia pestis Angola]
gi|165925225|ref|ZP_02221057.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165937153|ref|ZP_02225718.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. IP275]
gi|166008496|ref|ZP_02229394.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166212293|ref|ZP_02238328.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167421168|ref|ZP_02312921.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167423664|ref|ZP_02315417.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167468999|ref|ZP_02333703.1| deoxyribodipyrimidine photolyase [Yersinia pestis FV-1]
gi|218929768|ref|YP_002347643.1| deoxyribodipyrimidine photolyase [Yersinia pestis CO92]
gi|229838256|ref|ZP_04458415.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229895550|ref|ZP_04510721.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Pestoides A]
gi|229898820|ref|ZP_04513965.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. India 195]
gi|229901594|ref|ZP_04516716.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Nepal516]
gi|270489781|ref|ZP_06206855.1| FAD binding domain of DNA photolyase [Yersinia pestis KIM D27]
gi|294504486|ref|YP_003568548.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis Z176003]
gi|384122926|ref|YP_005505546.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D106004]
gi|384126809|ref|YP_005509423.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D182038]
gi|384139466|ref|YP_005522168.1| deoxyribodipyrimidine photolyase [Yersinia pestis A1122]
gi|384415591|ref|YP_005624953.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|420553020|ref|ZP_15050328.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-02]
gi|420558580|ref|ZP_15055192.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-03]
gi|420564034|ref|ZP_15060048.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-04]
gi|420569077|ref|ZP_15064628.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-05]
gi|420574726|ref|ZP_15069742.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-06]
gi|420580056|ref|ZP_15074582.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-07]
gi|420585384|ref|ZP_15079413.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-08]
gi|420590518|ref|ZP_15084031.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-09]
gi|420595913|ref|ZP_15088884.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-10]
gi|420601535|ref|ZP_15093889.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-11]
gi|420606977|ref|ZP_15098798.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-12]
gi|420612394|ref|ZP_15103667.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-13]
gi|420617756|ref|ZP_15108361.1| DNA photolyase family protein [Yersinia pestis PY-14]
gi|420623037|ref|ZP_15113090.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-15]
gi|420628142|ref|ZP_15117725.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-16]
gi|420633265|ref|ZP_15122327.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-19]
gi|420638464|ref|ZP_15126998.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-25]
gi|420643927|ref|ZP_15131964.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-29]
gi|420649220|ref|ZP_15136767.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-32]
gi|420654878|ref|ZP_15141852.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-34]
gi|420660347|ref|ZP_15146762.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-36]
gi|420665638|ref|ZP_15151502.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-42]
gi|420670533|ref|ZP_15155959.1| DNA photolyase family protein [Yersinia pestis PY-45]
gi|420675883|ref|ZP_15160827.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-46]
gi|420681492|ref|ZP_15165902.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-47]
gi|420686803|ref|ZP_15170634.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-48]
gi|420697804|ref|ZP_15180306.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-53]
gi|420703521|ref|ZP_15184921.1| DNA photolyase family protein [Yersinia pestis PY-54]
gi|420708992|ref|ZP_15189669.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-55]
gi|420714448|ref|ZP_15194540.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-56]
gi|420719947|ref|ZP_15199279.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-58]
gi|420725437|ref|ZP_15204083.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-59]
gi|420731042|ref|ZP_15209109.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-60]
gi|420736060|ref|ZP_15213644.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-61]
gi|420741538|ref|ZP_15218567.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-63]
gi|420747183|ref|ZP_15223377.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-64]
gi|420752691|ref|ZP_15228251.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-65]
gi|420758346|ref|ZP_15232871.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-66]
gi|420763706|ref|ZP_15237496.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-71]
gi|420768947|ref|ZP_15242208.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-72]
gi|420773944|ref|ZP_15246722.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-76]
gi|420779527|ref|ZP_15251652.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-88]
gi|420785120|ref|ZP_15256548.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-89]
gi|420790313|ref|ZP_15261192.1| DNA photolyase family protein [Yersinia pestis PY-90]
gi|420795823|ref|ZP_15266149.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-91]
gi|420800878|ref|ZP_15270687.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-92]
gi|420806252|ref|ZP_15275550.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-93]
gi|420811580|ref|ZP_15280347.1| DNA photolyase family protein [Yersinia pestis PY-94]
gi|420817125|ref|ZP_15285344.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-95]
gi|420827514|ref|ZP_15294673.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-98]
gi|420833231|ref|ZP_15299841.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-99]
gi|420838075|ref|ZP_15304220.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-100]
gi|420843257|ref|ZP_15308919.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-101]
gi|420848911|ref|ZP_15314004.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-102]
gi|420854494|ref|ZP_15318773.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-103]
gi|420859777|ref|ZP_15323386.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-113]
gi|421764191|ref|ZP_16200983.1| deoxyribodipyrimidine photolyase [Yersinia pestis INS]
gi|21958032|gb|AAM84843.1|AE013730_2 deoxyribodipyrimidine photolyase (photoreactivation) [Yersinia
pestis KIM10+]
gi|45437146|gb|AAS62698.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis biovar
Microtus str. 91001]
gi|108774994|gb|ABG17513.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Nepal516]
gi|115348379|emb|CAL21314.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis CO92]
gi|149291825|gb|EDM41899.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis
CA88-4125]
gi|162354236|gb|ABX88184.1| deoxyribodipyrimidine photolyase [Yersinia pestis Angola]
gi|165915016|gb|EDR33628.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. IP275]
gi|165922832|gb|EDR39983.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165992878|gb|EDR45179.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166206224|gb|EDR50704.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166960657|gb|EDR56678.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167057834|gb|EDR67580.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229681523|gb|EEO77617.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Nepal516]
gi|229688368|gb|EEO80439.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. India 195]
gi|229694622|gb|EEO84669.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
biovar Orientalis str. PEXU2]
gi|229701356|gb|EEO89384.1| deoxyribodipyrimidine photolyase, FAD-binding [Yersinia pestis
Pestoides A]
gi|262362522|gb|ACY59243.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D106004]
gi|262366473|gb|ACY63030.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis D182038]
gi|270338285|gb|EFA49062.1| FAD binding domain of DNA photolyase [Yersinia pestis KIM D27]
gi|294354945|gb|ADE65286.1| putative deoxyribodipyrimidine photolyase [Yersinia pestis Z176003]
gi|320016095|gb|ADV99666.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Medievalis
str. Harbin 35]
gi|342854595|gb|AEL73148.1| deoxyribodipyrimidine photolyase [Yersinia pestis A1122]
gi|391425862|gb|EIQ88096.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-02]
gi|391426528|gb|EIQ88704.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-03]
gi|391439765|gb|EIR00390.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-04]
gi|391441270|gb|EIR01775.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-05]
gi|391444732|gb|EIR04924.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-06]
gi|391456609|gb|EIR15620.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-07]
gi|391457600|gb|EIR16526.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-08]
gi|391459970|gb|EIR18708.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-09]
gi|391472759|gb|EIR30190.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-10]
gi|391474551|gb|EIR31831.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-11]
gi|391475170|gb|EIR32394.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-12]
gi|391488956|gb|EIR44747.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-13]
gi|391490139|gb|EIR45813.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-15]
gi|391491571|gb|EIR47119.1| DNA photolyase family protein [Yersinia pestis PY-14]
gi|391504403|gb|EIR58496.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-16]
gi|391505077|gb|EIR59114.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-19]
gi|391509951|gb|EIR63528.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-25]
gi|391520393|gb|EIR72946.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-29]
gi|391522601|gb|EIR74982.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-34]
gi|391523660|gb|EIR75952.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-32]
gi|391535615|gb|EIR86673.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-36]
gi|391538245|gb|EIR89065.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-42]
gi|391540465|gb|EIR91089.1| DNA photolyase family protein [Yersinia pestis PY-45]
gi|391553518|gb|EIS02837.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-46]
gi|391553991|gb|EIS03271.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-47]
gi|391554886|gb|EIS04092.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-48]
gi|391569662|gb|EIS17221.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-53]
gi|391575381|gb|EIS22105.1| DNA photolyase family protein [Yersinia pestis PY-54]
gi|391582438|gb|EIS28195.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-55]
gi|391585186|gb|EIS30620.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-56]
gi|391595896|gb|EIS39892.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-58]
gi|391598485|gb|EIS42198.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-60]
gi|391599985|gb|EIS43553.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-59]
gi|391612885|gb|EIS54907.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-61]
gi|391613474|gb|EIS55439.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-63]
gi|391617393|gb|EIS58941.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-64]
gi|391625715|gb|EIS66174.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-65]
gi|391632048|gb|EIS71614.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-66]
gi|391636532|gb|EIS75549.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-71]
gi|391638938|gb|EIS77685.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-72]
gi|391648656|gb|EIS86143.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-76]
gi|391652615|gb|EIS89658.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-88]
gi|391657171|gb|EIS93708.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-89]
gi|391661578|gb|EIS97608.1| DNA photolyase family protein [Yersinia pestis PY-90]
gi|391669556|gb|EIT04679.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-91]
gi|391678828|gb|EIT13013.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-93]
gi|391679816|gb|EIT13915.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-92]
gi|391680593|gb|EIT14621.1| DNA photolyase family protein [Yersinia pestis PY-94]
gi|391692750|gb|EIT25559.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-95]
gi|391697437|gb|EIT29832.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-98]
gi|391708633|gb|EIT39878.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-99]
gi|391713085|gb|EIT43895.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-100]
gi|391713730|gb|EIT44474.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-101]
gi|391725197|gb|EIT54686.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-102]
gi|391726962|gb|EIT56244.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-103]
gi|391729089|gb|EIT58115.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-113]
gi|411175505|gb|EKS45531.1| deoxyribodipyrimidine photolyase [Yersinia pestis INS]
Length = 487
Score = 211 bits (538), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 150/479 (31%), Positives = 230/479 (48%), Gaps = 30/479 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR DLRV DN AL A + +VIAVFI P + + +L+ +L HL +
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQHLQA 64
Query: 66 SLRSLGTSLVTKRSTDSVSS---LLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L + G L + D +S L++ + LF++ Y+ +RD L+ +
Sbjct: 65 ALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQLSER 124
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLP-PKRINSGDMS 181
I +SF+ +L P V + + F F + D +P PK ++ +
Sbjct: 125 AITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHAPPVL 184
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
P L F+ + + L G A + L F + +Y + R TS
Sbjct: 185 LSP---LPFDYPQQSVDSQLF----PAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTS 237
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWAN--EGNKAGDESVNLFLKSIGLREYSRYMSFN 299
LSP+L G +S R+ F+ + WA E + D +L + RE+ R++
Sbjct: 238 CLSPYLVLGVLSPRQCFNRL------WAESPEMLENADSGAFTWLNELIWREFYRHLLVA 291
Query: 300 HP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
+P P +G W E KAW+QG+TGYP+VDA MR++ TGW+H+R+R++
Sbjct: 292 YPRLCQHHPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMIS 351
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +G +
Sbjct: 352 ASFLVKDLLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGER 411
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
FD +G ++RRWLPELA +P IH PW E Q +YP P+V D + RL
Sbjct: 412 FDKDGVFIRRWLPELAAVPDSDIHQPWRWAERQQQHL------DYPVPLV--DHKQARL 462
>gi|417627628|ref|ZP_12277875.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_MHI813]
gi|345377932|gb|EGX09863.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_MHI813]
Length = 472
Score = 211 bits (537), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 153/481 (31%), Positives = 239/481 (49%), Gaps = 37/481 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-ELVKQVCAENSVTHLFYNYQYEVNERARDVDVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIKPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLNELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
HP P + + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 ITYHPSLCKHCPFIAWTERVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLINWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++R+WLPEL +P + +H PW E AG++L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRQWLPELRNVPGKSVHEPWKWAEK----AGVKL--DYPQPIVEHKEARV 459
Query: 476 R 476
+
Sbjct: 460 Q 460
>gi|416267586|ref|ZP_11641904.1| Deoxyribodipyrimidine photolyase [Shigella dysenteriae CDC 74-1112]
gi|420378972|ref|ZP_14878465.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 225-75]
gi|320175355|gb|EFW50459.1| Deoxyribodipyrimidine photolyase [Shigella dysenteriae CDC 74-1112]
gi|391305965|gb|EIQ63732.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 225-75]
Length = 472
Score = 211 bits (537), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 239/488 (48%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPSPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P P + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVML--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|340793620|ref|YP_004759083.1| deoxyribodipyrimidine photo-lyase [Corynebacterium variabile DSM
44702]
gi|340533530|gb|AEK36010.1| deoxyribodipyrimidine photo-lyase [Corynebacterium variabile DSM
44702]
Length = 492
Score = 211 bits (537), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 151/459 (32%), Positives = 210/459 (45%), Gaps = 41/459 (8%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYP-GRVSRWWLKHSLSHLDS 65
++VWFR DLR+ DN AL + G VIAV I P G + WW + SLS L
Sbjct: 8 TLVWFRDDLRLADNAALEWAAQGGEVIAVVIDEDAAATGVRPRGAAASWWRERSLSQLAG 67
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYD-PLSLVRDHRAKEALTAQGI 124
L G ++ + D V + + + +N Y+ PL V D R KE L A G
Sbjct: 68 RLLEHGVPML-HLAGDPVDIMTALPGLLAVDAVVWNRRYEEPLRFV-DSRIKETLQAGGT 125
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPK-------RINS 177
V SF LL EPW V +G+P+ F + + D A L+ R
Sbjct: 126 EVHSFPGHLLTEPWQVTTGEGRPYRVFTPYSRAATPVAEDAVAQLVEAAAQVPADLRGPE 185
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIE-------YSK 230
D+ P + D + ++ LA W+PG L F+ G Y+
Sbjct: 186 KDLPEVPFPPVRPVDPAPWAAS--LADHWTPGEEAGQATLAAFVTGDRRTTATGSPGYAD 243
Query: 231 NRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLR 290
R D+ T+ LSPHL FGEVS +V++ V + G+ + L + + R
Sbjct: 244 GRDIPDADATTGLSPHLRFGEVSPHRVWYAVARA----VDAGDVPAADGSALHSELL-WR 298
Query: 291 EYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGY----------------FKAWRQGRTGY 334
+++ ++ P R + F W D AWR G TG
Sbjct: 299 DFAWQRLYHRPDLASRCVREQFTQFPWRWDNSLPGDVKHLGDATALAQDLSAWRSGTTGI 358
Query: 335 PLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQ 394
PLVDAGMRELW TGW+H+R+R+VV SF K L WR G ++FWDTL+DAD S+ WQ
Sbjct: 359 PLVDAGMRELWTTGWMHNRVRMVVGSFLTKNLLADWRHGEQWFWDTLVDADPASNPFNWQ 418
Query: 395 YISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPEL 433
+++G D + RI NP+ + KFDP YV RW+PE
Sbjct: 419 WVAGCGDDASPYFRIFNPETQRKKFDPELGYVNRWVPEF 457
>gi|432749144|ref|ZP_19983759.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE29]
gi|431299336|gb|ELF88908.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE29]
Length = 472
Score = 211 bits (537), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 240/488 (49%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPSPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P P + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MISASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW Q AG++L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVKL--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|417230088|ref|ZP_12031674.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 5.0959]
gi|386206578|gb|EII11084.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 5.0959]
Length = 472
Score = 211 bits (537), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 239/488 (48%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P P + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MISASFLVKELLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVML--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|392421255|ref|YP_006457859.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri CCUG 29243]
gi|390983443|gb|AFM33436.1| deoxyribodipyrimidine photolyase [Pseudomonas stutzeri CCUG 29243]
Length = 476
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 149/494 (30%), Positives = 244/494 (49%), Gaps = 33/494 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPY--YPGRVSRWWLKHSLSHLDS 65
++W R DLR DN ALAA + G +A+++ P + + P +V+ +WL++ L+ L +
Sbjct: 4 LLWLRSDLRTSDNTALAAAMACGPTVALYLVTPGQWLAHDDAPCKVN-FWLRN-LAELST 61
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L +L L+ + D +LL+V + G +L +N Y RD L A
Sbjct: 62 RLGALNVPLLIREVDDWQAVPDALLKVCREQGVQRLHYNDEYGVNEQRRDRAVTTHLEAA 121
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCL-----SMP-FDPDAPLLPPKRIN 176
GI+VR + LL+ P V G F F+ F + CL S+P +P P I
Sbjct: 122 GISVRGYLDQLLFTPGSVRTQSGSYFKVFSQFRKACLAHLSVSLPACEPVPAAQAPLGIT 181
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
S + P+ F ++ L W G + A + L F+ L EY + R
Sbjct: 182 SDPI---PTTVTGFPRPTD-----YLRALWPAGEAFAQRRLAAFVEDDLNEYHQRRDLPA 233
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS +L G +S+R+ H + + +G V ++ + RE+ +++
Sbjct: 234 EPGTSQLSAYLAAGVISIRQCLH----AALGYNQGELDSGSTGVTTWINELLWREFYKHI 289
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P S R + W +AW+QGRTG+P++DA MR++ TGW+H+R+R
Sbjct: 290 LVGYPRVSMYRAFRPETEALPWRRAPYELEAWQQGRTGFPIIDAAMRQMQETGWMHNRLR 349
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
+VV+ F K L + WR G ++F L+D DL ++ GWQ+ + T D + R+ NP +
Sbjct: 350 MVVAMFLSKNLLIDWREGERWFMRHLIDGDLAANNGGWQWSASTGTDSVPYFRLFNPISQ 409
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
+FDP+G+++RRWLPEL L +H+P +A S+ G+ + YP PIV + A++
Sbjct: 410 SQRFDPDGQFLRRWLPELQHLSRRDVHNP-SAHRSLF---GV---TEYPAPIVDLGASRA 462
Query: 476 RLDEALSEMWQQEA 489
R +A + +A
Sbjct: 463 RALDAFRNLQDAQA 476
>gi|422020244|ref|ZP_16366784.1| deoxyribodipyrimidine photolyase [Providencia alcalifaciens Dmel2]
gi|414101839|gb|EKT63436.1| deoxyribodipyrimidine photolyase [Providencia alcalifaciens Dmel2]
Length = 477
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 152/498 (30%), Positives = 233/498 (46%), Gaps = 30/498 (6%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHL 63
C +VWFR DLRV DN AL VI V+I PE+ + +L +L L
Sbjct: 4 CHLVWFRNDLRVTDNKALTFACEDPTATVIGVYIATPEQWAAHNVSPRQIAFLHQNLVEL 63
Query: 64 DSSLRSLGTSLV---TKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+L G L+ T DSV LL + AT L+FNH Y+ +RD + ++
Sbjct: 64 QHTLAKRGIPLICHTTATFADSVKWLLNFAQQQNATGLYFNHQYELNERLRDEQLRQQ-- 121
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
AQ + + +++ LL P V +G + + F LS D P + +
Sbjct: 122 AQHLNIFTYDDALLLPPGSVTTQKGDMYQVYTPFRRAFLSQLMMSDFCSFPAPKPRGAAL 181
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
+ + L E ++ ++ G A L F + + +Y ++R T
Sbjct: 182 AVENTHPLFVHQSVE------ISPQFTAGEHAALAKLRQFCSERVQDYQRDRDIPAIDGT 235
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP+L G +S R+ + + + + + ++G S +L + RE+ ++
Sbjct: 236 SQLSPYLALGVLSPRQCVNRL-LAENPQVFDSQESGGFS---WLNELIWREFYSHLLVAF 291
Query: 301 P-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
P +P + + W DE AW+ G+TGYP+VDA MR+L TGW+H+R+R++V+
Sbjct: 292 PRLCRHQPFIEWTQHIQWNPDETALTAWKNGQTGYPIVDAAMRQLNQTGWMHNRLRMIVA 351
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L + WR G YF L+D L ++ GWQ+ + T D + RI NP +G KF
Sbjct: 352 SFLVKDLLVDWRKGEHYFMSQLIDGTLAANNGGWQWSASTGVDASPWFRIFNPTTQGKKF 411
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP G ++R WLPEL +P +IH P ES ++ NYP PIV A+ E
Sbjct: 412 DPQGTFIREWLPELRDVPETFIHEPHTWAESH------QVSLNYPTPIVDHKQARLMTLE 465
Query: 480 ALSEMWQQEAASRAAIEN 497
A EA R +I+
Sbjct: 466 AF------EAEKRKSIKK 477
>gi|432873386|ref|ZP_20093013.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE147]
gi|431404632|gb|ELG87880.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE147]
Length = 472
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 158/505 (31%), Positives = 241/505 (47%), Gaps = 71/505 (14%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLS---- 61
+VWFR+DLR+ DN ALAA R + V+A++I P R W H++S
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATP------------RQWAAHNMSPRQA 52
Query: 62 -HLDSSLRSLGTSLVTK------RSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLV 110
+++ L L +L K D ++ +E+VK A T LF+N+ Y+
Sbjct: 53 EFINAQLNGLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERA 112
Query: 111 RDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEK--------CL 159
RD + + L + + F+ ++ P V + + F F W K C+
Sbjct: 113 RDVQVERTL--RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECV 170
Query: 160 SMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTT 219
+ P + + P + + R P DT F E EK + A L
Sbjct: 171 AAPKVRSSESIDPAPSITLNYPRQPFDTAHFPVE-EKAAIA---------------QLRQ 214
Query: 220 FINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDES 279
F EY + R TS LS L G +S R+ H + +Q + G AG
Sbjct: 215 FCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG--- 269
Query: 280 VNLFLKSIGLREYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVD 338
+++L + RE+ R++ +P RP + W + +FKAW++G+TGYP+VD
Sbjct: 270 -SVWLNELIWREFYRHLMTYYPSLCKHRPFIVWTDRVQWQRNPAHFKAWQEGKTGYPIVD 328
Query: 339 AGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISG 398
A MR+L +TGW+H+R+R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ +
Sbjct: 329 AAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAAS 388
Query: 399 TIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIE 458
T D + RI NP +G KFD GE++RRWLPEL +P + +H PW +Q AG+
Sbjct: 389 TGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWK----WVQKAGVT 444
Query: 459 LGSNYPFPIVRIDAAKCRLDEALSE 483
L +YP PIV A+ R A E
Sbjct: 445 L--DYPQPIVDHKEARLRTLAAYEE 467
>gi|104780105|ref|YP_606603.1| deoxyribodipyrimidine photolyase [Pseudomonas entomophila L48]
gi|95109092|emb|CAK13789.1| deoxyribodipyrimidine photolyase (photoreactivation), FAD-binding
[Pseudomonas entomophila L48]
Length = 484
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 150/498 (30%), Positives = 246/498 (49%), Gaps = 31/498 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVS-RWWLKHSLSHLDSS 66
++W R DLR++DN AL+A + G +A++I +P + + +WL+ +L L +
Sbjct: 3 LIWLRSDLRIDDNTALSAACQGGPAVALWIASPGQWQRHDDAACKVDFWLR-NLRLLSQA 61
Query: 67 LRSLGTSLVTKRSTDS----VSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L +L L+ R+TD+ LLE + + +N Y +RD A+ L
Sbjct: 62 LEALNIPLLV-RTTDTWREVPQVLLEACREHQIGTVHWNEEYGVNETLRDSAARALLEQS 120
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCL-----SMPFDPDAPLLPPKRINS 177
G+A + LL++P V GQ F F+ F CL S+P A PKR
Sbjct: 121 GVATHTHLDQLLFKPGSVLTRGGQYFQVFSQFKRVCLEHLHRSLP----ARAQRPKRQAP 176
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
D++ SD + + + L W G A + L+ FI+ + +Y + R
Sbjct: 177 LDIA---SDPIPEQIDGFAIPPQSLRDHWPAGEEEAQRRLSRFIDETVEDYPQLRDLPAK 233
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGN-KAGDESVNLFLKSIGLREYSRYM 296
A TS LSP+L G +S R+ H +N G +G+ V ++ + RE+ +++
Sbjct: 234 AGTSQLSPYLAAGVISPRQCLHAALA-----SNHGEFDSGNAGVQTWVNELLWREFYKHI 288
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P S R H + W +AW+QGRTG+P++DA MR+L TGW+H+R+R
Sbjct: 289 LVGYPQVSRHRAFRVHTEALPWRNAPDDLEAWKQGRTGFPIIDAAMRQLLETGWMHNRLR 348
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++V+ F K L + WR G ++F L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 349 MIVAMFLSKNLLIDWREGERHFMRHLIDGDLAANNGGWQWSASTGTDAVPYFRIFNPTTQ 408
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
+FDP G ++R+WLPEL + + IH P + + + SNY PIV +D+++
Sbjct: 409 SQRFDPKGTFIRQWLPELQAMDEKTIHRPVKSADLFVTN---NYSSNYTSPIVDLDSSRQ 465
Query: 476 RLDEALSEM--WQQEAAS 491
R +A + WQ + +
Sbjct: 466 RALDAFKGLSTWQNQRGT 483
>gi|336249301|ref|YP_004593011.1| deoxyribodipyrimidine photolyase [Enterobacter aerogenes KCTC 2190]
gi|334735357|gb|AEG97732.1| deoxyribodipyrimidine photolyase [Enterobacter aerogenes KCTC 2190]
Length = 469
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 147/488 (30%), Positives = 236/488 (48%), Gaps = 49/488 (10%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR DLR+ DN ALAA R V+A++I PE+ ++ ++ L L +
Sbjct: 5 LVWFRMDLRLNDNLALAAACREPQAQVLALYIATPEQWRQHHMAPRQAAFIASHLRSLHA 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L G L+ + + + S+ L + K + LF+N+ Y+ RD ++ L +
Sbjct: 65 ALAERGIPLLVEEADNFAASIELLTRICKQHQVSHLFYNYQYEFNERQRDAGVEKIL--K 122
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAF-----------WEKCLSMPFDPDAPLLP 171
+ + F+ +L P V + + F F +C++ P + +
Sbjct: 123 EVTCQGFDDSVLLPPGSVMTGNREMYKVFTPFKNAFIRRLREGLPECVAAPKPRQSAIRQ 182
Query: 172 PKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKN 231
+ + + P DT +F + + LAR L F P +Y +
Sbjct: 183 ASPLPEINYPQTPFDTDLFAADEKTA----LAR------------LRAFCQQPAADYDQQ 226
Query: 232 RRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLRE 291
R TS LSP L G +S R+ H + +++ A +G +L I RE
Sbjct: 227 RDFPAIEGTSRLSPCLAVGVLSPRQCLHRL-LREQPGALDGEAGAS-----WLNEIIWRE 280
Query: 292 YSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWL 350
+ R++ +P RP + +W +E +AW+QG+TG+P+VDA MR+L ATGW+
Sbjct: 281 FYRHLMVYYPKLCKGRPFVAWTDKVAWRSNEDELQAWQQGQTGFPIVDAAMRQLNATGWM 340
Query: 351 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRID 410
H+R+R++V+SF K L+L WR G +YF L+D DL ++ GWQ+ + T D + RI
Sbjct: 341 HNRLRMIVASFLAKDLRLDWRQGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIF 400
Query: 411 NPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRI 470
NP +G KFD GE++RRWLPELA +P + +H PW L A + YP P+V
Sbjct: 401 NPTTQGEKFDKQGEFIRRWLPELAEVPEKALHQPW------LWADKQGVTLRYPRPLV-- 452
Query: 471 DAAKCRLD 478
D + RL+
Sbjct: 453 DHKQARLE 460
>gi|218704025|ref|YP_002411544.1| deoxyribodipyrimidine photolyase [Escherichia coli UMN026]
gi|293403952|ref|ZP_06647946.1| deoxyribodipyrimidine photolyase [Escherichia coli FVEC1412]
gi|298379728|ref|ZP_06989333.1| deoxyribodipyrimidine photo-lyase [Escherichia coli FVEC1302]
gi|300900701|ref|ZP_07118851.1| FAD binding domain of DNA photolyase [Escherichia coli MS 198-1]
gi|419936438|ref|ZP_14453451.1| deoxyribodipyrimidine photolyase [Escherichia coli 576-1]
gi|432352605|ref|ZP_19595890.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE2]
gi|432400842|ref|ZP_19643597.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE26]
gi|432424895|ref|ZP_19667412.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE181]
gi|432459718|ref|ZP_19701876.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE204]
gi|432474755|ref|ZP_19716764.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE208]
gi|432521392|ref|ZP_19758549.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE228]
gi|432536704|ref|ZP_19773623.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE235]
gi|432630320|ref|ZP_19866265.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE80]
gi|432639863|ref|ZP_19875704.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE83]
gi|432664931|ref|ZP_19900518.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE116]
gi|432773876|ref|ZP_20008163.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE54]
gi|432884970|ref|ZP_20099650.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE158]
gi|432910975|ref|ZP_20117539.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE190]
gi|433017674|ref|ZP_20205936.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE105]
gi|433052012|ref|ZP_20239242.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE122]
gi|433066948|ref|ZP_20253776.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE128]
gi|433157671|ref|ZP_20342540.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE177]
gi|433177181|ref|ZP_20361633.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE82]
gi|218431122|emb|CAR11998.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
UMN026]
gi|291428538|gb|EFF01563.1| deoxyribodipyrimidine photolyase [Escherichia coli FVEC1412]
gi|298279426|gb|EFI20934.1| deoxyribodipyrimidine photo-lyase [Escherichia coli FVEC1302]
gi|300355813|gb|EFJ71683.1| FAD binding domain of DNA photolyase [Escherichia coli MS 198-1]
gi|388401262|gb|EIL61920.1| deoxyribodipyrimidine photolyase [Escherichia coli 576-1]
gi|430878322|gb|ELC01752.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE2]
gi|430928609|gb|ELC49157.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE26]
gi|430958804|gb|ELC77381.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE181]
gi|430991670|gb|ELD08073.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE204]
gi|431009160|gb|ELD23784.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE208]
gi|431044746|gb|ELD55005.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE228]
gi|431073021|gb|ELD80758.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE235]
gi|431173903|gb|ELE73973.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE80]
gi|431184819|gb|ELE84565.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE83]
gi|431203672|gb|ELF02265.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE116]
gi|431320426|gb|ELG08068.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE54]
gi|431419449|gb|ELH01799.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE158]
gi|431444324|gb|ELH25347.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE190]
gi|431536549|gb|ELI12718.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE105]
gi|431575209|gb|ELI47956.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE122]
gi|431590068|gb|ELI61176.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE128]
gi|431681423|gb|ELJ47212.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE177]
gi|431709446|gb|ELJ73909.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE82]
Length = 472
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 157/505 (31%), Positives = 240/505 (47%), Gaps = 71/505 (14%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLS---- 61
+VWFR+DLR+ DN ALAA R + V+A++I P R W H++S
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATP------------RQWATHNMSPRQA 52
Query: 62 -HLDSSLRSLGTSLVTK------RSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLV 110
+++ L L +L K R D ++ +E++K A T LF+N+ Y+
Sbjct: 53 KLINAQLNGLRIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERA 112
Query: 111 RDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEK--------CL 159
RD + AL + + F+ ++ P V + + F F W K C+
Sbjct: 113 RDVEVERAL--RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMPECV 170
Query: 160 SMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTT 219
+ P + ++ P + + R P DT F E EK + A L
Sbjct: 171 AAPKVRSSGMIEPAPSITLNYPRQPFDTAHFPVE-EKAAIA---------------QLRQ 214
Query: 220 FINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDES 279
F EY + R TS LS L G +S R+ H + +Q A EG
Sbjct: 215 FCQSGAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQ-ALEGGAG---- 269
Query: 280 VNLFLKSIGLREYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVD 338
+++L + RE+ R++ +P RP + W + + +AW++G+TGYP+VD
Sbjct: 270 -SVWLNELIWREFYRHLMTYYPSLCKHRPFIVWTDRVQWQRNPAHLQAWQEGKTGYPIVD 328
Query: 339 AGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISG 398
A MR+L +TGW+H+R+R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ +
Sbjct: 329 AAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAAS 388
Query: 399 TIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIE 458
T D + RI NP +G KFD GE++RRWLPEL +P + +H PW Q AG+
Sbjct: 389 TGTDAAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVT 444
Query: 459 LGSNYPFPIVRIDAAKCRLDEALSE 483
L +YP PIV A+ R A E
Sbjct: 445 L--DYPQPIVDHKEARLRTLAAYEE 467
>gi|254438207|ref|ZP_05051701.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus
307]
gi|198253653|gb|EDY77967.1| deoxyribodipyrimidine photolyase family [Octadecabacter antarcticus
307]
Length = 533
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 156/484 (32%), Positives = 229/484 (47%), Gaps = 36/484 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
I W RRD R+ DN AL+A G VI VFI +E G ++ L + ++
Sbjct: 69 IYWVRRDFRIGDNAALSAACATGRPVIPVFI---CDEVVESHGAAPKFRLGEGVRVFGAA 125
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L +G+ LV +R D+++ L EVV TGAT +++N LYDP S RD K AL A G+ V
Sbjct: 126 LAVVGSRLVLRRG-DALAVLREVVAQTGATGVYWNRLYDPASKARDTGVKAALKADGVEV 184
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM--SRCP 184
SF LL+EPW V G + F W+ D P+ P + + D+ +
Sbjct: 185 ASFTGHLLFEPWTVETKTGGFYRVFTPLWKTVRGR--DVATPIPAPASVPAPDVWPTSDR 242
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
D +G + L A G + A L TFI G + Y NR TS LS
Sbjct: 243 LDDWALGAAMVRGRDVLAAHI-CVGEAAARTRLETFIEGRVQSYQTNRDLPGVDGTSRLS 301
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
+L +GE+S +H WA +G +F K + RE++ ++ + P+
Sbjct: 302 ENLTYGEISPAVCWH------AGWA--AIHSGKGQAEIFCKELVWREFAYHLVHHTPHIV 353
Query: 305 ERPLLGHLKFFSW-VVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
+R F W D AW+QGRTG VDA MRE++ +G +H+R R++V+S+
Sbjct: 354 DRNWKEGWDSFPWNTEDTAEVIAWKQGRTGIAFVDAAMREMYVSGTMHNRGRMIVASYLT 413
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L W+ G +F D L D D S+A+GWQ+ +G+ PD + R+ NP + KFD G
Sbjct: 414 KHLMTHWKVGQAWFDDCLTDWDPASNAMGWQWAAGSGPDAAPYFRVFNPVTQLDKFDRAG 473
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVL-------QAAGIELGSNYPFPIVRIDAAKCR 476
Y R W+ E +AP++ L + G+ YP P+V + + R
Sbjct: 474 LYARTWIAEGQG----------DAPDTALSYFDAIPKNWGLAATDQYPAPVVDMATGRQR 523
Query: 477 LDEA 480
EA
Sbjct: 524 ALEA 527
>gi|400754263|ref|YP_006562631.1| deoxyribodipyrimidine photo-lyase PhrB [Phaeobacter gallaeciensis
2.10]
gi|398653416|gb|AFO87386.1| deoxyribodipyrimidine photo-lyase PhrB [Phaeobacter gallaeciensis
2.10]
Length = 479
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 147/429 (34%), Positives = 225/429 (52%), Gaps = 23/429 (5%)
Query: 10 WFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLR 68
W RRDLR+ +NPAL A V AGA VI VFI+ +E G R+ L L+HL L
Sbjct: 14 WVRRDLRLAENPALDAAVAAGAPVIPVFIFDTLDEDL---GAAPRFRLGLGLAHLAKGLE 70
Query: 69 SLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRS 128
G L+ +R + L +++ TGA + + YDP ++ RD K+ L QGIA +S
Sbjct: 71 RRGARLILRRGP-AQEVLTQLITETGAGAIHWTRAYDPQAIARDTAIKKQLKGQGIAAKS 129
Query: 129 FNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPS--- 185
F LL+EPW V G + ++ +W+ D D + P RI + ++ P+
Sbjct: 130 FGGHLLFEPWTVETKTGGMYRVYSPYWKSVRDR--DVDGLIAAPSRIPAP--AQWPASDD 185
Query: 186 -DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
D+ +G++ ++A+ G A L F++ + +Y ++R TS LS
Sbjct: 186 LDSWQLAAGMRRGAD-VVAQYCRVGEDAAQARLAEFLDTRVADYKQDRDFPAVDATSGLS 244
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
+L +GE+S R+++H E +AG FLK I RE++ ++ F+ P+
Sbjct: 245 ENLAWGEISPRRMWHH--------GLEARRAGKSGAEHFLKEIVWREFAYHLMFHTPHIL 296
Query: 305 ERPLLGHLKFFSWV-VDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
R + F W D+ AWR+G+TGY VDA MREL+ TG +H+R R++V+SF
Sbjct: 297 TRNWRPEWESFRWSEQDDDRVDAWRRGQTGYNFVDAAMRELYVTGKMHNRARMIVASFLT 356
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K + WR G ++F + L+D D S+A+GWQ+++G+ PD F RI NP + KFDP G
Sbjct: 357 KHMLTHWRIGQQWFEECLVDWDPASNAMGWQWVAGSGPDASPFFRIFNPDGQLEKFDPKG 416
Query: 424 EYVRRWLPE 432
Y W+ E
Sbjct: 417 RYQSAWIAE 425
>gi|217965318|ref|YP_002350996.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HCC23]
gi|386007316|ref|YP_005925594.1| phr [Listeria monocytogenes L99]
gi|386025906|ref|YP_005946682.1| putative deoxyribodipyrimidine photolyase [Listeria monocytogenes
M7]
gi|217334588|gb|ACK40382.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes HCC23]
gi|307570126|emb|CAR83305.1| phr [Listeria monocytogenes L99]
gi|336022487|gb|AEH91624.1| putative deoxyribodipyrimidine photolyase [Listeria monocytogenes
M7]
Length = 467
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 134/465 (28%), Positives = 226/465 (48%), Gaps = 25/465 (5%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S++WFRRDLRV DN AL + ++ +F P + + G S S++H
Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEDDLLLLFQVNPAQ---FITGSPSHQAFFASVAHFKQ 58
Query: 66 SL-RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ ++ ++ + L + + + +++FN RD A+ Q I
Sbjct: 59 EIDKTAHVQIMFGEPIECFQQLKDTLPSWD--KVYFNRDETGYGAKRDEAAQAFFDEQKI 116
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS-MPFDPDAPLLPPKRINSGDMSRC 183
V+SF+ L+ +V + + + F +++K + P L P+ I
Sbjct: 117 EVQSFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFKVTLKPENIRK------ 170
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
++L + E + G A+ L FI + +Y K R + TS L
Sbjct: 171 --ESLFPKYEEQFAEMTCDLPILDSGERAANTRLANFIKHDIADYDKARDFPELDKTSHL 228
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
S +L GE+S+R V+ + Q + A EG F K + R++ + + P
Sbjct: 229 SRYLRTGEISIRTVWQAL---QETKATEGRAT-------FEKELCWRDFYNMIYVSFPNQ 278
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
P+ + +F W + +FKAW++G+TG+PLVDA MR+L TGW+H+R+R++ +SF
Sbjct: 279 KNEPIQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLT 338
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WR+G KYF L+D D S+ GWQ+ + T D + RI NP + KFDP
Sbjct: 339 KDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDPTA 398
Query: 424 EYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
+++R+++ ELA LP ++IH P E+ + G+ LG +YPFP++
Sbjct: 399 KFIRKYVKELANLPDKYIHQPEKMSETEQKEYGLVLGKDYPFPLI 443
>gi|440288513|ref|YP_007341278.1| deoxyribodipyrimidine photolyase [Enterobacteriaceae bacterium
strain FGI 57]
gi|440048035|gb|AGB79093.1| deoxyribodipyrimidine photolyase [Enterobacteriaceae bacterium
strain FGI 57]
Length = 472
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 144/469 (30%), Positives = 229/469 (48%), Gaps = 28/469 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG--AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
++WFR DLR+ DN AL+A R+ VIA++I P++ + ++ L+ L +
Sbjct: 5 LMWFRHDLRLNDNLALSAACRSADATVIALYIATPKQWQQHAMSPRQAAYIHAHLTALRA 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
SL G L D SV +L + LF+N+ Y+ RD ++AL
Sbjct: 65 SLEEKGIPLAFVEVDDFAASVEALKIFCDEHEVSSLFYNYQYEVNERQRDAAVEKAL--D 122
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFD--PDAPLLPPKRINSGDM 180
G+ + F+ ++ P V + + F F + L+ D P+ P KR N+
Sbjct: 123 GVRCQGFDDSVILPPGAVMTGNHEMYKVFTPFKKAWLTRLDDGMPECVAAPAKRKNAAHS 182
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
T + + S+ + +A + L F EY+ R T
Sbjct: 183 VTSAPITFSYPQQDFDASH------FPADEKSAIRQLRQFCQQGAGEYASQRDFPAIEGT 236
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY-MSFN 299
S LS L G +S R+ H + +Q ++G +++L + RE+ R+ M++N
Sbjct: 237 SRLSAALAIGAISPRQCLHRLLTEQPKTLDDGPG------SVWLNELIWREFYRHLMTYN 290
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
RP +G + W V + KAW++G+TGYP+VDA MR+L ATGW+H+R+R++ +
Sbjct: 291 PALCKHRPFIGWTERVKWRVSPEHLKAWQEGQTGYPIVDAAMRQLNATGWMHNRLRMIAA 350
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +G +F
Sbjct: 351 SFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERF 410
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
D GE++R+W+ ELA +P + IH PW + G+ L YP PIV
Sbjct: 411 DKEGEFIRQWVSELAEVPQKAIHEPWKWADK----EGVTLA--YPRPIV 453
>gi|432371439|ref|ZP_19614495.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE11]
gi|430899652|gb|ELC21746.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE11]
Length = 472
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 152/481 (31%), Positives = 235/481 (48%), Gaps = 37/481 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + ++ L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNPSARVLALYIATPRQWATHNMSPRQAEFINAQLNTLQI 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL--- 119
L G L+ D SV + +V + T LF+N+ Y+ + RA++AL
Sbjct: 65 MLAEKGIPLLFHEVDDFAASVEMVKQVCEENRVTHLFYNYQYEV-----NERARDALVEK 119
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSMPFDPDAPLLPPKRIN 176
T + F+ ++ P V + + F F W K L P+ + PK +
Sbjct: 120 TLHNVVCEGFDGSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGI-PEC-VAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG ++ S TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIAPPSSITLNYPRQSFDTAHFPVEE------KTAIAQLRQFCQSGAGEYEQQRNFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q A EG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGVLSPRQCLHRLLAEQPQ-ALEGGAG-----SVWLNELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
HP RP + W + + KAW++G+TGYP+VDA MR+L TGW+H+R+R
Sbjct: 286 MTYHPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNGTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++R+WLPEL +P + +H PW E AG++L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRQWLPELRDVPGKLVHEPWKWAEK----AGVKL--DYPQPIVDHKEARV 459
Query: 476 R 476
R
Sbjct: 460 R 460
>gi|187734160|ref|YP_001879362.1| deoxyribodipyrimidine photolyase [Shigella boydii CDC 3083-94]
gi|187431152|gb|ACD10426.1| deoxyribodipyrimidine photolyase [Shigella boydii CDC 3083-94]
Length = 472
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 155/488 (31%), Positives = 239/488 (48%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D ++S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFIASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPSPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P P + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVML--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|260853943|ref|YP_003227834.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
11368]
gi|415789825|ref|ZP_11494736.1| deoxyribodipyrimidine photo-lyase [Escherichia coli EPECa14]
gi|417294504|ref|ZP_12081778.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 900105 (10e)]
gi|419207874|ref|ZP_13750999.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC8C]
gi|419214311|ref|ZP_13757339.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC8D]
gi|419225421|ref|ZP_13768308.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC9A]
gi|419231285|ref|ZP_13774075.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC9B]
gi|419236591|ref|ZP_13779340.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC9C]
gi|419242166|ref|ZP_13784814.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC9D]
gi|419253376|ref|ZP_13795921.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10A]
gi|419259425|ref|ZP_13801877.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10B]
gi|419265422|ref|ZP_13807807.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10C]
gi|419271099|ref|ZP_13813427.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10D]
gi|419282623|ref|ZP_13824839.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10F]
gi|419879000|ref|ZP_14400452.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CVM9534]
gi|419881262|ref|ZP_14402597.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CVM9545]
gi|419904183|ref|ZP_14423188.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM9942]
gi|419906819|ref|ZP_14425687.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM10026]
gi|420101941|ref|ZP_14612988.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CVM9455]
gi|420109394|ref|ZP_14619538.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CVM9553]
gi|420112587|ref|ZP_14622384.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM10021]
gi|420121952|ref|ZP_14630984.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM10030]
gi|420126811|ref|ZP_14635513.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM10224]
gi|420134473|ref|ZP_14642579.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM9952]
gi|424748500|ref|ZP_18176643.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424759470|ref|ZP_18187135.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CFSAN001630]
gi|425377578|ref|ZP_18761958.1| deoxyribodipyrimidine photo-lyase [Escherichia coli EC1865]
gi|257752592|dbj|BAI24094.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
O26:H11 str. 11368]
gi|323153779|gb|EFZ40026.1| deoxyribodipyrimidine photo-lyase [Escherichia coli EPECa14]
gi|378061864|gb|EHW24044.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC8C]
gi|378067633|gb|EHW29746.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC8D]
gi|378081009|gb|EHW42965.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC9A]
gi|378081731|gb|EHW43680.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC9B]
gi|378089814|gb|EHW51655.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC9C]
gi|378094429|gb|EHW56227.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC9D]
gi|378106210|gb|EHW67841.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10A]
gi|378115368|gb|EHW76908.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10B]
gi|378118196|gb|EHW79702.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10C]
gi|378121121|gb|EHW82579.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10D]
gi|378138593|gb|EHW99846.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC10F]
gi|386262219|gb|EIJ17666.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 900105 (10e)]
gi|388333213|gb|EIK99850.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CVM9534]
gi|388365745|gb|EIL29522.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CVM9545]
gi|388368135|gb|EIL31785.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM9942]
gi|388378192|gb|EIL40950.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM10026]
gi|394390868|gb|EJE67797.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM10224]
gi|394406905|gb|EJE81818.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CVM9553]
gi|394413302|gb|EJE87344.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CVM9455]
gi|394414257|gb|EJE88206.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM10021]
gi|394421411|gb|EJE94883.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM9952]
gi|394424170|gb|EJE97344.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CVM10030]
gi|408309331|gb|EKJ26525.1| deoxyribodipyrimidine photo-lyase [Escherichia coli EC1865]
gi|421944397|gb|EKU01651.1| deoxyribodipyrimidine photolyase [Escherichia coli O26:H11 str.
CFSAN001629]
gi|421947289|gb|EKU04368.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H11 str.
CFSAN001630]
Length = 472
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 239/488 (48%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVKTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPSPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P P + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MISASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVML--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|418253998|ref|ZP_12878900.1| deoxyribodipyrimidine photolyase [Shigella flexneri 6603-63]
gi|397900751|gb|EJL17107.1| deoxyribodipyrimidine photolyase [Shigella flexneri 6603-63]
Length = 472
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 152/481 (31%), Positives = 239/481 (49%), Gaps = 37/481 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+ WFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L +G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEIGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVDVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIKPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCENGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P RP + W + + +AW++G+TGYP++DA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW Q AG++L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVKL--DYPQPIVEHKEARV 459
Query: 476 R 476
+
Sbjct: 460 Q 460
>gi|385787736|ref|YP_005818845.1| deoxyribodipyrimidine photolyase (photoreactivation) [Erwinia sp.
Ejp617]
gi|310767008|gb|ADP11958.1| deoxyribodipyrimidine photolyase (photoreactivation) [Erwinia sp.
Ejp617]
Length = 477
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 144/444 (32%), Positives = 214/444 (48%), Gaps = 17/444 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRA--GAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VW R DLR+ DN AL A R+ VIA+FI P + + ++ SL +
Sbjct: 5 LVWLRNDLRINDNHALYAACRSKQANVIALFIATPGQWRTHLMAPKQAEFIWQSLQDVQQ 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
SL + G L + D SV+ L E + +LF+N+ Y+ RD + L
Sbjct: 65 SLAAKGIVLHVAQCDDFSASVTLLQEFCREHRVNRLFYNYQYEVNERQRDAAVERTLQHD 124
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAP-LLPPKRINSGDMS 181
+ V+ F+ LL P V + + F F K P LP + G
Sbjct: 125 NVVVQGFDDSLLLPPGSVLTGNREMYKVFTPF-SKAFVKRLQQGLPECLPAPAVRPGGAV 183
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
+D+LV D + +A L + G A L F + +Y R TS
Sbjct: 184 EARADSLVALDYPREDIDAGL---FPSGEKAAIARLREFCQQAVADYPDKRNLPACDGTS 240
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LS +L G +S R+ H + +KQ A E D V ++L + RE+ R++ P
Sbjct: 241 RLSVYLATGVLSPRQCLHRL-LKQHPGALE-----DSRVFVWLNELIWREFYRHLLVAFP 294
Query: 302 -YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
+P + K W VD AW+QG+TGYP+VDA MR+L + GW+H+R+R++ +S
Sbjct: 295 ALCRHQPFMRWTKSVKWRVDSQQLTAWQQGKTGYPIVDAAMRQLNSLGWMHNRLRMITAS 354
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +G +FD
Sbjct: 355 FLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFD 414
Query: 421 PNGEYVRRWLPELARLPTEWIHHP 444
+GE++R WLPEL +P E+IH P
Sbjct: 415 KDGEFIRHWLPELRHVPPEYIHQP 438
>gi|420822431|ref|ZP_15290112.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-96]
gi|391695682|gb|EIT28232.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-96]
Length = 480
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 150/479 (31%), Positives = 230/479 (48%), Gaps = 30/479 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR DLRV DN AL A + +VIAVFI P + + +L+ +L HL +
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQHLQA 64
Query: 66 SLRSLGTSLVTKRSTDSVSS---LLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L + G L + D +S L++ + LF++ Y+ +RD L+ +
Sbjct: 65 ALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQLSER 124
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLP-PKRINSGDMS 181
I +SF+ +L P V + + F F + D +P PK ++ +
Sbjct: 125 AITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHAPPVL 184
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
P L F+ + + L G A + L F + +Y + R TS
Sbjct: 185 LSP---LPFDYPQQSVDSQLF----PAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTS 237
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWAN--EGNKAGDESVNLFLKSIGLREYSRYMSFN 299
LSP+L G +S R+ F+ + WA E + D +L + RE+ R++
Sbjct: 238 CLSPYLVLGVLSPRQCFNRL------WAESPEMLENADSGAFTWLNELIWREFYRHLLVA 291
Query: 300 HP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
+P P +G W E KAW+QG+TGYP+VDA MR++ TGW+H+R+R++
Sbjct: 292 YPRLCQHHPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMIS 351
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +G +
Sbjct: 352 ASFLVKDLLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGER 411
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
FD +G ++RRWLPELA +P IH PW E Q +YP P+V D + RL
Sbjct: 412 FDKDGVFIRRWLPELAAVPDSDIHQPWRWAERQQQHL------DYPVPLV--DHKQARL 462
>gi|420547711|ref|ZP_15045581.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-01]
gi|391424563|gb|EIQ86924.1| deoxyribodipyrimidine photo-lyase [Yersinia pestis PY-01]
Length = 487
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 150/479 (31%), Positives = 230/479 (48%), Gaps = 30/479 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR DLRV DN AL A + +VIAVFI P + + +L+ +L HL +
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQHLQA 64
Query: 66 SLRSLGTSLVTKRSTDSVSS---LLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L + G L + D +S L++ + LF++ Y+ +RD L+ +
Sbjct: 65 ALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQLSER 124
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLP-PKRINSGDMS 181
I +SF+ +L P V + + F F + D +P PK ++ +
Sbjct: 125 AIPCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHAPPVL 184
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
P L F+ + + L G A + L F + +Y + R TS
Sbjct: 185 LSP---LPFDYPQQSVDSQLF----PAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTS 237
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWAN--EGNKAGDESVNLFLKSIGLREYSRYMSFN 299
LSP+L G +S R+ F+ + WA E + D +L + RE+ R++
Sbjct: 238 CLSPYLVLGVLSPRQCFNRL------WAESPEMLENADSGAFTWLNELIWREFYRHLLVA 291
Query: 300 HP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
+P P +G W E KAW+QG+TGYP+VDA MR++ TGW+H+R+R++
Sbjct: 292 YPRLCQHHPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMIS 351
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +G +
Sbjct: 352 ASFLVKDLLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGER 411
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
FD +G ++RRWLPELA +P IH PW E Q +YP P+V D + RL
Sbjct: 412 FDKDGVFIRRWLPELAAVPDSDIHQPWRWAERQQQHL------DYPVPLV--DHKQARL 462
>gi|307315377|ref|ZP_07594947.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli W]
gi|378713928|ref|YP_005278821.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KO11FL]
gi|386608033|ref|YP_006123519.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia
coli W]
gi|386702523|ref|YP_006166360.1| deoxyribodipyrimidine photolyase [Escherichia coli KO11FL]
gi|386708475|ref|YP_006172196.1| deoxyribodipyrimidine photolyase [Escherichia coli W]
gi|306905271|gb|EFN35815.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli W]
gi|315059950|gb|ADT74277.1| deoxyribodipyrimidine photolyase, FAD-binding protein [Escherichia
coli W]
gi|323379489|gb|ADX51757.1| Deoxyribodipyrimidine photo-lyase [Escherichia coli KO11FL]
gi|383394050|gb|AFH19008.1| deoxyribodipyrimidine photolyase [Escherichia coli KO11FL]
gi|383404167|gb|AFH10410.1| deoxyribodipyrimidine photolyase [Escherichia coli W]
Length = 472
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 239/488 (48%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P P + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MISASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVML--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|293191025|ref|ZP_06609069.1| deoxyribodipyrimidine photolyase family protein [Actinomyces
odontolyticus F0309]
gi|292820712|gb|EFF79678.1| deoxyribodipyrimidine photolyase family protein [Actinomyces
odontolyticus F0309]
Length = 475
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 142/451 (31%), Positives = 211/451 (46%), Gaps = 33/451 (7%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPE---------EEGPYYPGRVSRWWL 56
+++W R DLR+ D+PAL A A V +W E GP G +RWW
Sbjct: 2 TTLIWLRDDLRLADHPALTAACSAADGPVVALWIHETRRTDEDNNRHGPRPLGAATRWWY 61
Query: 57 KHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAK 116
SL L L LG LV R D+ + + VV A T + + Y P + D K
Sbjct: 62 HRSLQQLAPRLADLGIPLVFTRG-DAANVMRRVVDALQPTVVHWTRRYAPAACRLDAAIK 120
Query: 117 EALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRIN 176
+ LT++ V S LL EPW + G + F F +P P P
Sbjct: 121 QELTSR-TEVHSHPGSLLAEPWLMQTVNGSHYQVFTPFSHAVADLPLTSLLPEPSPIGER 179
Query: 177 SGDMSRCPS----------DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLI 226
G + + + + DE LA+ W PG A + L I+ L
Sbjct: 180 GGADTALATLREDGVLQNLEDIGLLDEGPAWWEETLAQHWEPGELAARQQLDA-IDSWLP 238
Query: 227 EYSKNRR-KADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
Y+ R + +TS +SP L GE+S R+ R + A E + + +
Sbjct: 239 GYATRRDLPGEETSTSRISPRLRCGELSPRQAVAAART---------STASGEDIVAWTR 289
Query: 286 SIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELW 345
+ RE+S ++ + + + P+ F + D+ +AWRQGRTG LVDAGMR+LW
Sbjct: 290 QLYWREFSWHLLHHREHLEDTPMRPAFAEFPYYPDDHLARAWRQGRTGIDLVDAGMRQLW 349
Query: 346 ATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRA 405
TGW+H+R+R+V +S K + PW+ G ++FW+TL+DAD ++ + WQ+++G D
Sbjct: 350 QTGWMHNRVRMVAASLLTKNMLQPWQDGEQWFWETLVDADEANNPISWQWVAGCGADAAP 409
Query: 406 FDRIDNPQFEGYKFDPNGEYVRRWLPE-LAR 435
+ RI NP + +FDP YVRRW+PE LAR
Sbjct: 410 YFRIFNPDLQRTRFDPRSRYVRRWIPEGLAR 440
>gi|110640918|ref|YP_668646.1| deoxyribodipyrimidine photolyase [Escherichia coli 536]
gi|191174072|ref|ZP_03035588.1| deoxyribodipyrimidine photolyase [Escherichia coli F11]
gi|300996480|ref|ZP_07181454.1| FAD binding domain of DNA photolyase [Escherichia coli MS 200-1]
gi|422378314|ref|ZP_16458537.1| FAD binding domain of DNA photolyase [Escherichia coli MS 60-1]
gi|432470086|ref|ZP_19712139.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE206]
gi|432712376|ref|ZP_19947426.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE8]
gi|433076876|ref|ZP_20263440.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE131]
gi|110342510|gb|ABG68747.1| deoxyribodipyrimidine photolyase [Escherichia coli 536]
gi|190905680|gb|EDV65303.1| deoxyribodipyrimidine photolyase [Escherichia coli F11]
gi|300304534|gb|EFJ59054.1| FAD binding domain of DNA photolyase [Escherichia coli MS 200-1]
gi|324010431|gb|EGB79650.1| FAD binding domain of DNA photolyase [Escherichia coli MS 60-1]
gi|431000153|gb|ELD16227.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE206]
gi|431259327|gb|ELF51701.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE8]
gi|431600596|gb|ELI70264.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE131]
Length = 472
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 157/499 (31%), Positives = 241/499 (48%), Gaps = 59/499 (11%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLS---- 61
+VWFR+DLR+ DN ALAA R + V+A++I P R W H++S
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATP------------RQWAAHNVSPRQA 52
Query: 62 -HLDSSLRSLGTSLVTK------RSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLV 110
+++ L +L +L K R D ++ +E+VK A T LF+N+ Y+
Sbjct: 53 ELINTQLNALQIALAEKGIPLLFREVDDFAASVEIVKQVCAEYRVTHLFYNYQYEVNERA 112
Query: 111 RDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDP 165
RD +A+ L + + F+ ++ P V + + F F W K L MP
Sbjct: 113 RDVQAERTL--RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP--- 167
Query: 166 DAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPL 225
+ PK +SG + PS TL + +S ++ + A L F
Sbjct: 168 -ECVAAPKVRSSGSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCLNGA 220
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
EY + R TS LS L G +S R+ H + +Q EG +++L
Sbjct: 221 GEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQ-VLEGGPG-----SVWLN 274
Query: 286 SIGLREYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMREL 344
+ RE+ R++ +P RP + W + + KAW++G+TGYP+VDA MR+L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQL 334
Query: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 404
+TGW+H+R+R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 405 AFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
+ RI NP +G KFD GE++R+WLPEL +P + +H PW E G+ L +YP
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKAVHEPWKWAEKT----GVTL--DYP 448
Query: 465 FPIVRIDAAKCRLDEALSE 483
PIV A+ R A E
Sbjct: 449 QPIVDHKEARLRTLAAYEE 467
>gi|386080190|ref|YP_005993715.1| deoxyribodipyrimidine photo-lyase PhrB [Pantoea ananatis PA13]
gi|354989371|gb|AER33495.1| deoxyribodipyrimidine photo-lyase PhrB [Pantoea ananatis PA13]
Length = 475
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 151/491 (30%), Positives = 232/491 (47%), Gaps = 49/491 (9%)
Query: 8 IVWFRRDLRVEDNPALAAGVRA--GAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VW R DLR+ DN AL A VIA+FI P + + ++ SL L S
Sbjct: 5 LVWLRNDLRINDNLALHAACTQPDARVIALFIATPGQWQQHEMAARQVAFIHQSLDMLQS 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
SL G L + D S+ L+ + +LF+N+ Y+ RD A++ L
Sbjct: 65 SLAERGIPLHFHQCDDFAASIDFLVGFCQKQQVDKLFYNYQYEVNERERDASAEKRLHEA 124
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWE-----------KCLSMPFDPD-APLL 170
+ + F+ LL P + G+ + F F + +C+ P + APL
Sbjct: 125 NVVCQGFDDSLLLPPGSIQTGDGEMYKVFTPFSKAFLRRLQQGLPECVPAPKAREGAPLK 184
Query: 171 PPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSK 230
PK + D + DT +F PG A K L F +++Y+K
Sbjct: 185 EPKSLPPFDYPKADIDTSLF----------------PPGEQAAVKRLREFAKQAVLDYAK 228
Query: 231 NRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDES-VNLFLKSIGL 289
R +TS LS +L G +S R+ H + +E KA + S +++ +
Sbjct: 229 QRDLPALDSTSRLSVYLSTGVLSPRQCLHRI-------LHEQPKALESSPAAVWINELIW 281
Query: 290 REYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATG 348
RE+ R++ HP +P + + +W + +F AW+ G+TGYP+VDA MR++ G
Sbjct: 282 REFYRHLIVAHPRLCKHQPFVHWTRNVAWQRNSAHFDAWKAGKTGYPIVDAAMRQMQTIG 341
Query: 349 WLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDR 408
W+H+R+R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + R
Sbjct: 342 WMHNRLRMITASFLVKDLLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFR 401
Query: 409 IDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
I NP +G +FD GE++RR+LPEL +P IH P Q +L +YP PIV
Sbjct: 402 IFNPTTQGERFDKEGEFIRRYLPELKEVPDSDIHQ----PHQWAQKNNKKL--DYPAPIV 455
Query: 469 -RIDAAKCRLD 478
DA K LD
Sbjct: 456 EHKDARKKTLD 466
>gi|432717737|ref|ZP_19952735.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE9]
gi|431266356|gb|ELF57917.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE9]
Length = 472
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 236/488 (48%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAV--IAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR DN ALAA R +V +A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSVRVLALYIATPRQWAAHNVSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ D +S+ E+VK A T LF+N+ Y+ RD + + L
Sbjct: 65 ALAEKGIPLLFHEVDDFAASV-EIVKQVCAENRVTHLFYNYQYEVNERARDVQVERTL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + + ++ + A L F EY + R
Sbjct: 178 SGSIDPAPSITLNYPRQPFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L GE+S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGELSPRQCLHRLLAEQPQALDGG--AG----SIWLNELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P RP + W + + KAW++G+TGYP+VDA MR+L TGW+H+R+R
Sbjct: 286 ITYYPSLCKHRPFIVWTDRVQWQSNSAHLKAWQEGKTGYPIVDAAMRQLNTTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKVVHEPWKWA----QKAGVTL--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|425298869|ref|ZP_18688918.1| DNA photolyase [Escherichia coli 07798]
gi|408221285|gb|EKI45239.1| DNA photolyase [Escherichia coli 07798]
Length = 472
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 151/487 (31%), Positives = 234/487 (48%), Gaps = 35/487 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR DN ALAA R + V+A++I P + + + L+ L +
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLNALQN 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L G L+ + D SV ++ +V T LF+N+ Y+ RD +A+ L +
Sbjct: 65 ALAEQGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERTL--R 122
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRINS 177
+ F+ ++ P V + + F F W K L MP + PK +S
Sbjct: 123 NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRSS 178
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
G + PS TL + +S ++ + A L F EY + R
Sbjct: 179 GSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAV 232
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
TS LS L G +S R+ H + +Q G + ++L + RE+ R++
Sbjct: 233 EGTSRLSASLATGGLSPRQCLHRLLAEQPQVLEGGPGS------VWLNELIWREFYRHLM 286
Query: 298 FNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
+P RP + W + + KAW++G+TGYP+VDA MR+L +TGW+H+R+R+
Sbjct: 287 TYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +G
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFD GE++R+WLPEL +P + +H PW E G+ L +YP PIV A+ R
Sbjct: 407 EKFDREGEFIRQWLPELRDVPGKAVHEPWKWAEKT----GVTL--DYPQPIVDHKEARLR 460
Query: 477 LDEALSE 483
A E
Sbjct: 461 TLAAYEE 467
>gi|291616713|ref|YP_003519455.1| PhrB [Pantoea ananatis LMG 20103]
gi|291151743|gb|ADD76327.1| PhrB [Pantoea ananatis LMG 20103]
Length = 475
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 149/490 (30%), Positives = 230/490 (46%), Gaps = 47/490 (9%)
Query: 8 IVWFRRDLRVEDNPALAAGVRA--GAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VW R DLR+ DN AL A VIA+FI P + + ++ SL L S
Sbjct: 5 LVWLRNDLRINDNLALHAACTQPDARVIALFIATPGQWQQHEMAARQVAFIHQSLDMLQS 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
SL G L + D S+ L+ + +LF+N+ Y+ RD A++ L
Sbjct: 65 SLAERGIPLHFHQCDDFAASIDFLVGFCQKQQVDKLFYNYQYEVNERERDASAEKRLHEA 124
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWE-----------KCLSMPFDPDA-PLL 170
+ + F+ LL P + G+ + F F + +C+ P + PL
Sbjct: 125 NVVCQGFDDSLLLPPGSIQTGDGEMYKVFTPFSKAFLRRLQQGLPECVPAPKAREGTPLK 184
Query: 171 PPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSK 230
PK + D + DT +F PG A K L F +++Y+K
Sbjct: 185 EPKSLPPFDYPKADIDTSLF----------------PPGEQAAVKRLREFAKQAVLDYAK 228
Query: 231 NRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLR 290
R +TS LS +L G +S R+ H + +Q + G A +++ + R
Sbjct: 229 QRDLPALDSTSRLSVYLSTGVLSPRQCLHRILHEQPKALDSGPAA------VWINELIWR 282
Query: 291 EYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGW 349
E+ R++ HP +P + + +W + +F AW+ G+TGYP+VDA MR++ GW
Sbjct: 283 EFYRHLIVAHPRLCKHQPFVHWTRNVAWQRNSAHFDAWKAGKTGYPIVDAAMRQMQTIGW 342
Query: 350 LHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRI 409
+H+R+R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI
Sbjct: 343 MHNRLRMITASFLVKDLLIDWREGERYFIQQLIDGDLAANNGGWQWAASTGTDAAPYFRI 402
Query: 410 DNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV- 468
NP +G +FD GE++RR+LPEL +P IH P Q +L +YP PIV
Sbjct: 403 FNPTTQGERFDKEGEFIRRYLPELKEVPDSDIHQ----PHQWAQKNNKKL--DYPAPIVE 456
Query: 469 RIDAAKCRLD 478
DA K LD
Sbjct: 457 HKDARKKTLD 466
>gi|191167217|ref|ZP_03029036.1| deoxyribodipyrimidine photolyase [Escherichia coli B7A]
gi|309797420|ref|ZP_07691812.1| FAD binding domain of DNA photolyase [Escherichia coli MS 145-7]
gi|190902765|gb|EDV62495.1| deoxyribodipyrimidine photolyase [Escherichia coli B7A]
gi|308118944|gb|EFO56206.1| FAD binding domain of DNA photolyase [Escherichia coli MS 145-7]
Length = 472
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 239/488 (48%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P P + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MISASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVML--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|432601239|ref|ZP_19837489.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE66]
gi|431143355|gb|ELE45088.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE66]
Length = 472
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 158/499 (31%), Positives = 240/499 (48%), Gaps = 59/499 (11%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLS---- 61
+VWFR+DLR DN ALAA R + V+A++I P R W H++S
Sbjct: 5 LVWFRQDLRQHDNLALAAACRYSSARVLALYIATP------------RQWAAHNVSPRQA 52
Query: 62 -HLDSSLRSLGTSLVTK------RSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLV 110
+++ L L +L K R D ++ +E+VK A T LF+N+ Y+
Sbjct: 53 ELINAQLNGLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERA 112
Query: 111 RDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDP 165
RD + + L + + F+ ++ P V + + F F W K L MP
Sbjct: 113 RDVQVERTL--RNVVCEGFDDSVILPPGTVMTGNHEMYKVFTPFKNAWLKRLREGMP--- 167
Query: 166 DAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPL 225
+ PK +SG + PS TL + + ++ + A L F
Sbjct: 168 -ECVAAPKVRSSGSIDPAPSITLNYPRQPFDTAHFPVEE------KAAIAQLRQFCQNGA 220
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
EY + R TS LS L G +S R+ H + +Q + G AG +++L
Sbjct: 221 GEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLN 274
Query: 286 SIGLREYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMREL 344
+ RE+ R++ +P RP + W + + KAW++G+TGYP+VDA MR+L
Sbjct: 275 ELIWREFYRHLITYYPSLCKHRPFIVWTDRVQWQSNSAHLKAWQEGKTGYPIVDAAMRQL 334
Query: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 404
+TGW+H+R+R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 405 AFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
+ RI NP +G KFD GE++RRWLPEL +P + +H PW Q AG+ L +YP
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVTL--DYP 448
Query: 465 FPIVRIDAAKCRLDEALSE 483
PIV A+ R A E
Sbjct: 449 QPIVDHKEARLRTLAAYEE 467
>gi|433197274|ref|ZP_20381199.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE94]
gi|431725146|gb|ELJ89056.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE94]
Length = 472
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 152/487 (31%), Positives = 235/487 (48%), Gaps = 35/487 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR DN ALAA R + V+A++I P + + + L+ L +
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSARVLALYIATPHQWAAHNVSPRQAELINTQLNALQN 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L G L+ + D SV ++ +V T LF+N+ Y+ RD +A+ L +
Sbjct: 65 ALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERTL--R 122
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRINS 177
+ F+ ++ P V + + F F W K L MP + PK +S
Sbjct: 123 NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRSS 178
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
G + PS TL + +S ++ + A L F EY + R
Sbjct: 179 GSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAV 232
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
TS LS L G +S R+ H + +Q EG +++L + RE+ R++
Sbjct: 233 EGTSRLSASLATGGLSPRQCLHRLLAEQPQ-VLEGGPG-----SVWLNELIWREFYRHLM 286
Query: 298 FNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
+P RP + W + + KAW++G+TGYP+VDA MR+L +TGW+H+R+R+
Sbjct: 287 TYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +G
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFD GE++R+WLPEL +P + +H PW E G+ L +YP PIV A+ R
Sbjct: 407 EKFDREGEFIRQWLPELRDVPGKAVHEPWKWAEKT----GVTL--DYPQPIVDHKEARLR 460
Query: 477 LDEALSE 483
A E
Sbjct: 461 TLAAYEE 467
>gi|306812880|ref|ZP_07447073.1| deoxyribodipyrimidine photolyase [Escherichia coli NC101]
gi|419699576|ref|ZP_14227191.1| deoxyribodipyrimidine photolyase [Escherichia coli SCI-07]
gi|419911562|ref|ZP_14430034.1| deoxyribodipyrimidine photolyase [Escherichia coli KD1]
gi|422382541|ref|ZP_16462701.1| FAD binding domain of DNA photolyase, partial [Escherichia coli MS
57-2]
gi|432380341|ref|ZP_19623298.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE15]
gi|432386111|ref|ZP_19629009.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE16]
gi|432430765|ref|ZP_19673210.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE187]
gi|432440036|ref|ZP_19682391.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE189]
gi|432445149|ref|ZP_19687457.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE191]
gi|432464677|ref|ZP_19706785.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE205]
gi|432512912|ref|ZP_19750148.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE224]
gi|432582775|ref|ZP_19819185.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE57]
gi|432610388|ref|ZP_19846560.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE72]
gi|432645146|ref|ZP_19880946.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE86]
gi|432654944|ref|ZP_19890657.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE93]
gi|432698024|ref|ZP_19933191.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE169]
gi|432731380|ref|ZP_19966218.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE45]
gi|432744644|ref|ZP_19979344.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE43]
gi|432758459|ref|ZP_19992962.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE46]
gi|432800938|ref|ZP_20034925.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE84]
gi|432842936|ref|ZP_20076357.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE141]
gi|432903049|ref|ZP_20112666.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE194]
gi|432942664|ref|ZP_20139923.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE183]
gi|432970830|ref|ZP_20159708.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE207]
gi|432984346|ref|ZP_20173084.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE215]
gi|433012889|ref|ZP_20201267.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE104]
gi|433022514|ref|ZP_20210529.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE106]
gi|433037650|ref|ZP_20225266.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE113]
gi|433071764|ref|ZP_20258460.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE129]
gi|433081600|ref|ZP_20268074.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE133]
gi|433100226|ref|ZP_20286336.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE145]
gi|433119266|ref|ZP_20304974.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE157]
gi|433143294|ref|ZP_20328461.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE168]
gi|433182252|ref|ZP_20366549.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE85]
gi|433187502|ref|ZP_20371621.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE88]
gi|433206833|ref|ZP_20390531.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE97]
gi|433323395|ref|ZP_20400744.1| deoxyribodipyrimidine photolyase [Escherichia coli J96]
gi|305853643|gb|EFM54082.1| deoxyribodipyrimidine photolyase [Escherichia coli NC101]
gi|324006250|gb|EGB75469.1| FAD binding domain of DNA photolyase [Escherichia coli MS 57-2]
gi|380349280|gb|EIA37553.1| deoxyribodipyrimidine photolyase [Escherichia coli SCI-07]
gi|388393275|gb|EIL54660.1| deoxyribodipyrimidine photolyase [Escherichia coli KD1]
gi|430909617|gb|ELC30983.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE16]
gi|430911450|gb|ELC32736.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE15]
gi|430956387|gb|ELC75063.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE187]
gi|430969268|gb|ELC86418.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE189]
gi|430975871|gb|ELC92755.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE191]
gi|430997428|gb|ELD13695.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE205]
gi|431044470|gb|ELD54743.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE224]
gi|431119791|gb|ELE22790.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE57]
gi|431151206|gb|ELE52241.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE72]
gi|431183924|gb|ELE83697.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE86]
gi|431194338|gb|ELE93603.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE93]
gi|431246512|gb|ELF40776.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE169]
gi|431278288|gb|ELF69282.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE45]
gi|431294926|gb|ELF85103.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE43]
gi|431311423|gb|ELF99586.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE46]
gi|431350896|gb|ELG37699.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE84]
gi|431397464|gb|ELG80920.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE141]
gi|431436579|gb|ELH18094.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE194]
gi|431453716|gb|ELH34100.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE183]
gi|431485967|gb|ELH65624.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE207]
gi|431506089|gb|ELH84693.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE215]
gi|431535160|gb|ELI11543.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE104]
gi|431540033|gb|ELI15665.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE106]
gi|431554966|gb|ELI28830.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE113]
gi|431592855|gb|ELI63424.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE129]
gi|431605435|gb|ELI74824.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE133]
gi|431622349|gb|ELI91130.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE145]
gi|431648491|gb|ELJ15887.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE157]
gi|431665690|gb|ELJ32404.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE168]
gi|431708936|gb|ELJ73438.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE88]
gi|431711340|gb|ELJ75693.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE85]
gi|431732643|gb|ELJ96094.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE97]
gi|432348098|gb|ELL42550.1| deoxyribodipyrimidine photolyase [Escherichia coli J96]
Length = 472
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 151/487 (31%), Positives = 234/487 (48%), Gaps = 35/487 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR DN ALAA R + V+A++I P + + + L+ L +
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLNALQN 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L G L+ + D SV ++ +V T LF+N+ Y+ RD +A+ L +
Sbjct: 65 ALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERTL--R 122
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRINS 177
+ F+ ++ P V + + F F W K L MP + PK +S
Sbjct: 123 NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRSS 178
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
G + PS TL + +S ++ + A L F EY + R
Sbjct: 179 GSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAV 232
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
TS LS L G +S R+ H + +Q G + ++L + RE+ R++
Sbjct: 233 EGTSRLSASLATGGLSPRQCLHRLLAEQPQVLEGGPGS------VWLNELIWREFYRHLM 286
Query: 298 FNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
+P RP + W + + KAW++G+TGYP+VDA MR+L +TGW+H+R+R+
Sbjct: 287 TYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +G
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFD GE++R+WLPEL +P + +H PW E G+ L +YP PIV A+ R
Sbjct: 407 EKFDREGEFIRQWLPELRDVPGKAVHEPWKWAEKT----GVTL--DYPQPIVDHKEARLR 460
Query: 477 LDEALSE 483
A E
Sbjct: 461 TLAAYEE 467
>gi|300765347|ref|ZP_07075330.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
N1-017]
gi|404280146|ref|YP_006681044.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2755]
gi|404285957|ref|YP_006692543.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype 7
str. SLCC2482]
gi|300513908|gb|EFK40972.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes FSL
N1-017]
gi|404226781|emb|CBY48186.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2755]
gi|404244886|emb|CBY03111.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype 7
str. SLCC2482]
Length = 467
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 136/464 (29%), Positives = 229/464 (49%), Gaps = 23/464 (4%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S++WFRRDLRV DN AL + ++ +F P + G S S++H
Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEDDLLLLFQVNP---AQFITGSPSHQGFFASVAHFKQ 58
Query: 66 SL-RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ ++ ++ + L + + + +++FN RD A+ Q I
Sbjct: 59 EIDKTAHLQIMFGEPIECFQQLKDSLPSWD--KVYFNRDETGYGAKRDEAAQAFFDEQKI 116
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V++F+ L+ +V + + + F +++K + + P K + R
Sbjct: 117 EVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKK-----WREEIKETPFKVTLKHENIRKE 171
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
S L +E++ + ++ L G A+ L FI + +Y K R + TS LS
Sbjct: 172 SLFLKYEEQFAEMTSDL--PILDIGERAANTRLANFIKHDVADYDKARDFPELDKTSHLS 229
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
+L GE+S+R ++ + Q + A EG F K + R++ + + P
Sbjct: 230 RYLRTGEISIRTIWQTL---QETEATEGRAT-------FEKELCWRDFYNMIYVSFPNQK 279
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
P+ + +F W + YFKAW++G+TG+PLVDA MR+L TGW+H+R+R++ +SF K
Sbjct: 280 NEPIQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTK 339
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L + WR+G KYF L+D D S+ GWQ+ + T D + RI NP + KFD G+
Sbjct: 340 DLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGK 399
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
++R+++ ELA LP ++IH P E+ + G+ LG +YPFPIV
Sbjct: 400 FIRKYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIV 443
>gi|170681516|ref|YP_001742812.1| deoxyribodipyrimidine photolyase [Escherichia coli SMS-3-5]
gi|300937834|ref|ZP_07152629.1| FAD binding domain of DNA photolyase [Escherichia coli MS 21-1]
gi|432679123|ref|ZP_19914523.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE143]
gi|170519234|gb|ACB17412.1| deoxyribodipyrimidine photolyase [Escherichia coli SMS-3-5]
gi|300457153|gb|EFK20646.1| FAD binding domain of DNA photolyase [Escherichia coli MS 21-1]
gi|431224521|gb|ELF21742.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE143]
Length = 472
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 158/499 (31%), Positives = 241/499 (48%), Gaps = 59/499 (11%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAV--IAVFIWAPEEEGPYYPGRVSRWWLKHSLS---- 61
+VWFR+DLR DN ALAA R +V +A++I P R W H++S
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSVRVLALYIATP------------RQWAAHNMSPRQA 52
Query: 62 -HLDSSLRSLGTSLVTK------RSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLV 110
+++ L L +L K D ++ +E+VK A T LF+N+ Y+
Sbjct: 53 EFINAQLNGLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERA 112
Query: 111 RDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDP 165
RD +A+ AL + + F+ ++ P V + + F F W K L MP
Sbjct: 113 RDVQAERAL--RNVVCEGFDDGVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP--- 167
Query: 166 DAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPL 225
+ PK +SG + PS TL + + ++ + A L F
Sbjct: 168 -ECVAAPKVRSSGSIDPAPSITLNYPRQPFDTAHFPVEE------KAAIAQLRQFCQNGA 220
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
EY + R TS LS L G +S R+ H + +Q + G AG +++L
Sbjct: 221 GEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SIWLN 274
Query: 286 SIGLREYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMREL 344
+ RE+ R++ +P RP + W + + KAW++G+TGYP+VDA MR+L
Sbjct: 275 ELIWREFYRHLITYYPSLCKHRPFIVWTDRVQWQSNSAHLKAWQEGKTGYPIVDAAMRQL 334
Query: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 404
+TGW+H+R+R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 405 AFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
+ RI NP +G KFD GE++R+WLPEL +P + +H PW Q AG+ L +YP
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGVTL--DYP 448
Query: 465 FPIVRIDAAKCRLDEALSE 483
PIV A+ R A E
Sbjct: 449 QPIVDHKEARLRTLAAYEE 467
>gi|47093329|ref|ZP_00231098.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes str. 4b
H7858]
gi|226223217|ref|YP_002757324.1| DNA photolyase [Listeria monocytogenes serotype 4b str. CLIP 80459]
gi|386731355|ref|YP_006204851.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes 07PF0776]
gi|405754672|ref|YP_006678136.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2540]
gi|406703371|ref|YP_006753725.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes L312]
gi|417314672|ref|ZP_12101366.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J1816]
gi|47018298|gb|EAL09062.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype
4b str. H7858]
gi|225875679|emb|CAS04382.1| Putative DNA photolyase [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|328467416|gb|EGF38492.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes J1816]
gi|384390113|gb|AFH79183.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes 07PF0776]
gi|404223872|emb|CBY75234.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2540]
gi|406360401|emb|CBY66674.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes L312]
Length = 467
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 136/464 (29%), Positives = 229/464 (49%), Gaps = 23/464 (4%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S++WFRRDLRV DN AL + ++ +F P + G S S++H
Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEDDLLLLFQVNP---AQFITGSPSHQAFFASVAHFKQ 58
Query: 66 SL-RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ ++ ++ + L + + + +++FN RD A+ Q I
Sbjct: 59 EIDKTAHLQIMFGEPIECFQQLKDSLPSWD--KVYFNRDETGYGAKRDEAAQAFFDEQKI 116
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V++F+ L+ +V + + + F +++K + + P K + R
Sbjct: 117 EVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKK-----WREEIKETPFKVTLKHENIRKE 171
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
S L +E++ + ++ L G A+ L FI + +Y K R + TS LS
Sbjct: 172 SLFLKYEEQFAEMTSDL--PILDIGERAANTRLANFIKHDVADYDKARDFPELDKTSHLS 229
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
+L GE+S+R ++ + Q + A EG F K + R++ + + P
Sbjct: 230 RYLRTGEISIRTIWQTL---QETEATEGRAT-------FEKELCWRDFYNMIYVSFPNQK 279
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
P+ + +F W + YFKAW++G+TG+PLVDA MR+L TGW+H+R+R++ +SF K
Sbjct: 280 NEPIQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTK 339
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L + WR+G KYF L+D D S+ GWQ+ + T D + RI NP + KFD G+
Sbjct: 340 DLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGK 399
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
++R+++ ELA LP ++IH P E+ + G+ LG +YPFPIV
Sbjct: 400 FIRKYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIV 443
>gi|456062579|ref|YP_007501549.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium CB]
gi|455439876|gb|AGG32814.1| deoxyribodipyrimidine photo-lyase [beta proteobacterium CB]
Length = 496
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 151/491 (30%), Positives = 237/491 (48%), Gaps = 37/491 (7%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVI-AVFIWAPEEEGPY-----------YPGRVSRW 54
++VW RRDLR+ DN AL + A + FI+ E P + RV
Sbjct: 4 ALVWLRRDLRLYDNAALHHALTNNAQVWMTFIFDTEILEPLKVDDQASGALTHDRRVDFI 63
Query: 55 WLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHR 114
W L +D+ LR G L+ + + + + ++ K G ++ NH Y+P ++ RD+
Sbjct: 64 W--QGLQQIDAQLRKQGGGLIVQFGKPT-TCIPKIAKTLGVNTVYTNHDYEPSAIARDNS 120
Query: 115 AKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSMPFDPDAPLLP 171
L GI +F +++E ++ F+ F + W K L D A
Sbjct: 121 VATLLEKLGIDFETFKDQVIFEKKEILTNSNTVFSIFTPYKNNWLKTLQEK-DIAAYDCT 179
Query: 172 PKRINSGDMSRCPS--DTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYS 229
PK+ G + PS ++ + ES S + G L F++ + +Y
Sbjct: 180 PKK---GQFAAIPSTLESPLPSLESMGFSPTGIETYLPSGSEGGQSFLEDFLH-RIDQYQ 235
Query: 230 KNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGL 289
R S+LS HL FG +S+R + V A+ AG ++L +
Sbjct: 236 IGRDFPAIKGVSYLSTHLRFGMLSIRGL--------VREAHRRMLAGSMGATIWLSELIW 287
Query: 290 REYSRYMSFNHPYSHE----RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELW 345
R++ + NHP E +P ++++ + FKAW G+TGYPLVDA M +L
Sbjct: 288 RDFYFMILANHPRLAEGAAFKPDYDNIEWEGGATAKKLFKAWCDGKTGYPLVDAAMHQLN 347
Query: 346 ATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRA 405
+G++H+R+R+VV+SF K L + WRWG YF L D +L S+ GWQ+ S + D +
Sbjct: 348 QSGYMHNRLRMVVASFLTKDLGIDWRWGEMYFAKHLNDFELSSNNGGWQWASSSGCDAQP 407
Query: 406 FDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPF 465
+ RI NP + KFDP G+++RR+LP+L +L + IH PW A L+AAGI LG +YP
Sbjct: 408 YFRIFNPITQSQKFDPEGKFIRRYLPQLDKLSKKSIHAPWEAGHIELEAAGILLGRDYPL 467
Query: 466 PIVRIDAAKCR 476
P+V D A+ +
Sbjct: 468 PVVNHDEARKK 478
>gi|366158602|ref|ZP_09458464.1| deoxyribodipyrimidine photolyase [Escherichia sp. TW09308]
Length = 472
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 152/481 (31%), Positives = 234/481 (48%), Gaps = 37/481 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + ++ L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNPSARVLALYIATPRQWATHNMSPRQAEFINAQLNTLQI 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL--- 119
L G L+ D SV + +V + T LF+N+ Y+ + RA++AL
Sbjct: 65 MLAEKGIPLLFHEVDDFAASVEMVKQVCEENRVTHLFYNYQYEV-----NERARDALVEK 119
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSMPFDPDAPLLPPKRIN 176
T + F+ ++ P V + + F F W K L P+ + PK +
Sbjct: 120 TLHNVVCEGFDGSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGI-PEC-VAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG ++ S TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIAPPSSITLNYPRQSFDTAHFPVEE------KTAIAQLRQFCQSGAGEYEQQRNFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q A EG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQ-ALEGGAG-----SVWLNELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
HP RP + W + + KAW++G+TGYP+VDA MR+L TGW+H+R+R
Sbjct: 286 MTYHPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNGTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++R+WLPEL +P + +H PW E AG+ L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRQWLPELRDVPGKLVHEPWKWAEK----AGVRL--DYPQPIVDHKEARV 459
Query: 476 R 476
R
Sbjct: 460 R 460
>gi|145598860|ref|YP_001162936.1| deoxyribodipyrimidine photolyase [Yersinia pestis Pestoides F]
gi|145210556|gb|ABP39963.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Pestoides
F]
Length = 487
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 150/479 (31%), Positives = 230/479 (48%), Gaps = 30/479 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR DLRV DN AL A + +VIAVFI P + + +L+ +L HL +
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQHLQA 64
Query: 66 SLRSLGTSLVTKRSTDSVSS---LLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L + G L + D +S L++ + LF++ Y+ +RD L+ +
Sbjct: 65 ALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQLSER 124
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLP-PKRINSGDMS 181
I +SF+ +L P V + + F F + D +P PK ++ +
Sbjct: 125 AITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHAPPVL 184
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
P L F+ + + L G A + L F + +Y + R TS
Sbjct: 185 LSP---LPFDYPQQSVDSQLF----PAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTS 237
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWAN--EGNKAGDESVNLFLKSIGLREYSRYMSFN 299
LSP+L G +S R+ F+ + WA E + D +L + RE+ R++
Sbjct: 238 CLSPYLVLGVLSPRQCFNRL------WAESPEMLENADSGAFTWLNELIWREFYRHLLVA 291
Query: 300 HP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
+P P +G W E KAW+QG+TGYP+VDA MR++ TGW+H+R+R++
Sbjct: 292 YPRLCQHHPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMIS 351
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +G +
Sbjct: 352 ASFLVKDLLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGER 411
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
FD +G ++RRWLPELA +P IH PW E Q +YP P+V D + RL
Sbjct: 412 FDKDGVFIRRWLPELAAVPDSDIHQPWRWAERQQQHL------DYPAPLV--DHKQARL 462
>gi|46906833|ref|YP_013222.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype
4b str. F2365]
gi|405751816|ref|YP_006675281.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2378]
gi|424713475|ref|YP_007014190.1| Deoxyribodipyrimidine photo-lyase [Listeria monocytogenes serotype
4b str. LL195]
gi|46880099|gb|AAT03399.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes serotype
4b str. F2365]
gi|404221016|emb|CBY72379.1| deoxyribodipyrimidine photolyase [Listeria monocytogenes SLCC2378]
gi|424012659|emb|CCO63199.1| Deoxyribodipyrimidine photo-lyase [Listeria monocytogenes serotype
4b str. LL195]
Length = 467
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 136/464 (29%), Positives = 229/464 (49%), Gaps = 23/464 (4%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S++WFRRDLRV DN AL + ++ +F P + G S S++H
Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKENDLLLLFQVNP---AQFITGSPSHQAFFASVAHFKQ 58
Query: 66 SL-RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ ++ ++ + L + + + +++FN RD A+ Q I
Sbjct: 59 EIDKTAHLQIMFGEPIECFQQLKDSLPSWD--KVYFNRDETGYGAKRDEAAQAFFDEQKI 116
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V++F+ L+ +V + + + F +++K + + P K + R
Sbjct: 117 EVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKK-----WREEIKETPFKVTLKHENIRKE 171
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
S L +E++ + ++ L G A+ L FI + +Y K R + TS LS
Sbjct: 172 SLFLKYEEQFAEMTSDL--PILDIGERAANTRLANFIKHDVADYDKARDFPELDKTSHLS 229
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
+L GE+S+R ++ + Q + A EG F K + R++ + + P
Sbjct: 230 RYLRTGEISIRTIWQSL---QETEATEGRAT-------FEKELCWRDFYNMIYVSFPNQK 279
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
P+ + +F W + YFKAW++G+TG+PLVDA MR+L TGW+H+R+R++ +SF K
Sbjct: 280 NEPIQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTK 339
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L + WR+G KYF L+D D S+ GWQ+ + T D + RI NP + KFD G+
Sbjct: 340 DLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQKFDSTGK 399
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
++R+++ ELA LP ++IH P E+ + G+ LG +YPFPIV
Sbjct: 400 FIRKYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIV 443
>gi|432673671|ref|ZP_19909166.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE142]
gi|431218003|gb|ELF15489.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE142]
Length = 472
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 239/488 (48%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPSPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P P + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MISASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVML--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|293409079|ref|ZP_06652655.1| conserved hypothetical protein [Escherichia coli B354]
gi|291469547|gb|EFF12031.1| conserved hypothetical protein [Escherichia coli B354]
Length = 472
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 154/487 (31%), Positives = 236/487 (48%), Gaps = 35/487 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + ++ L+ L
Sbjct: 5 LVWFRQDLRLHDNFALAAACRYSSARVLALYIATPRQWAAHNMSPRQAEFINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L G L+ D SV + +V T LF+N+ Y+ RD + + L +
Sbjct: 65 ALAEKGIPLLFHEVDDFAASVEIVEQVCAENRVTHLFYNYQYEVNERARDVQVERTL--R 122
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRINS 177
+ F+ ++ P V + + F F W K L MP + PK +S
Sbjct: 123 NVVCEGFDDSVILPPGTVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRSS 178
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
G + PS TL + + ++ + A L F EY + R
Sbjct: 179 GSIDPAPSITLNYPRQPFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAV 232
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 233 EGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLNELIWREFYRHLI 286
Query: 298 FNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
HP RP + W + +FKAW++G+TGYP+VDA MR+L +TGW+H+R+R+
Sbjct: 287 TYHPSLCKHRPFIVWTDRVQWQRNPTHFKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +G
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFD GE++R+WLPEL +P + +H PW E AG+ L +YP PIV A+ R
Sbjct: 407 EKFDREGEFIRQWLPELRNVPGKAVHEPWKWAEK----AGVTL--DYPQPIVDHKEARLR 460
Query: 477 LDEALSE 483
A E
Sbjct: 461 TLAAYEE 467
>gi|193070647|ref|ZP_03051584.1| deoxyribodipyrimidine photolyase [Escherichia coli E110019]
gi|260866839|ref|YP_003233241.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
O111:H- str. 11128]
gi|300906963|ref|ZP_07124633.1| FAD binding domain of DNA photolyase [Escherichia coli MS 84-1]
gi|301305193|ref|ZP_07211291.1| FAD binding domain of DNA photolyase [Escherichia coli MS 124-1]
gi|415818897|ref|ZP_11508513.1| deoxyribodipyrimidine photo-lyase [Escherichia coli OK1180]
gi|415860594|ref|ZP_11534309.1| FAD binding domain of DNA photolyase [Escherichia coli MS 85-1]
gi|417193165|ref|ZP_12015012.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 4.0522]
gi|417219176|ref|ZP_12024018.1| deoxyribodipyrimidine photo-lyase [Escherichia coli JB1-95]
gi|417590394|ref|ZP_12241111.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2534-86]
gi|417606816|ref|ZP_12257340.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_DG131-3]
gi|417638029|ref|ZP_12288197.1| deoxyribodipyrimidine photo-lyase [Escherichia coli TX1999]
gi|419168695|ref|ZP_13713089.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC7A]
gi|419179678|ref|ZP_13723301.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC7C]
gi|419185236|ref|ZP_13728758.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC7D]
gi|419190689|ref|ZP_13734155.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC7E]
gi|419195815|ref|ZP_13739220.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC8A]
gi|419201869|ref|ZP_13745094.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC8B]
gi|419219971|ref|ZP_13762924.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC8E]
gi|419368973|ref|ZP_13910101.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC14A]
gi|419805391|ref|ZP_14330528.1| FAD binding domain of DNA photolyase [Escherichia coli AI27]
gi|419866126|ref|ZP_14388497.1| deoxyribodipyrimidine photolyase [Escherichia coli O103:H25 str.
CVM9340]
gi|419889567|ref|ZP_14409952.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CVM9570]
gi|419896132|ref|ZP_14415872.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CVM9574]
gi|419928868|ref|ZP_14446573.1| deoxyribodipyrimidine photolyase [Escherichia coli 541-1]
gi|420090248|ref|ZP_14602021.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CVM9602]
gi|420096405|ref|ZP_14607796.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CVM9634]
gi|420384331|ref|ZP_14883717.1| deoxyribodipyrimidine photo-lyase [Escherichia coli EPECa12]
gi|424771442|ref|ZP_18198585.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CFSAN001632]
gi|427803769|ref|ZP_18970836.1| deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia
coli chi7122]
gi|427808359|ref|ZP_18975424.1| deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia
coli]
gi|433129063|ref|ZP_20314533.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE163]
gi|433133877|ref|ZP_20319252.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE166]
gi|443616732|ref|YP_007380588.1| deoxyribodipyrimidine photolyase [Escherichia coli APEC O78]
gi|192956035|gb|EDV86501.1| deoxyribodipyrimidine photolyase [Escherichia coli E110019]
gi|257763195|dbj|BAI34690.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
O111:H- str. 11128]
gi|300401266|gb|EFJ84804.1| FAD binding domain of DNA photolyase [Escherichia coli MS 84-1]
gi|300839505|gb|EFK67265.1| FAD binding domain of DNA photolyase [Escherichia coli MS 124-1]
gi|315257624|gb|EFU37592.1| FAD binding domain of DNA photolyase [Escherichia coli MS 85-1]
gi|323180055|gb|EFZ65611.1| deoxyribodipyrimidine photo-lyase [Escherichia coli OK1180]
gi|345344925|gb|EGW77284.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 2534-86]
gi|345364221|gb|EGW96347.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_DG131-3]
gi|345395156|gb|EGX24907.1| deoxyribodipyrimidine photo-lyase [Escherichia coli TX1999]
gi|378017913|gb|EHV80780.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC7A]
gi|378026863|gb|EHV89495.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC7C]
gi|378032654|gb|EHV95235.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC7D]
gi|378040752|gb|EHW03215.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC7E]
gi|378052010|gb|EHW14321.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC8A]
gi|378056269|gb|EHW18516.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC8B]
gi|378071823|gb|EHW33890.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC8E]
gi|378221634|gb|EHX81879.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC14A]
gi|384471571|gb|EIE55645.1| FAD binding domain of DNA photolyase [Escherichia coli AI27]
gi|386190346|gb|EIH79094.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 4.0522]
gi|386192938|gb|EIH87246.1| deoxyribodipyrimidine photo-lyase [Escherichia coli JB1-95]
gi|388336307|gb|EIL02854.1| deoxyribodipyrimidine photolyase [Escherichia coli O103:H25 str.
CVM9340]
gi|388357206|gb|EIL21798.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CVM9570]
gi|388358887|gb|EIL23271.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CVM9574]
gi|388404913|gb|EIL65356.1| deoxyribodipyrimidine photolyase [Escherichia coli 541-1]
gi|391309167|gb|EIQ66844.1| deoxyribodipyrimidine photo-lyase [Escherichia coli EPECa12]
gi|394386486|gb|EJE63986.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CVM9602]
gi|394389156|gb|EJE66347.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CVM9634]
gi|412961951|emb|CCK45864.1| deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia
coli chi7122]
gi|412968538|emb|CCJ43163.1| deoxyribodipyrimidine photolyase (photoreactivation) [Escherichia
coli]
gi|421940301|gb|EKT97775.1| deoxyribodipyrimidine photolyase [Escherichia coli O111:H8 str.
CFSAN001632]
gi|431651007|gb|ELJ18312.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE163]
gi|431662120|gb|ELJ28905.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE166]
gi|443421240|gb|AGC86144.1| deoxyribodipyrimidine photolyase [Escherichia coli APEC O78]
Length = 472
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 239/488 (48%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPSPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P P + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MISASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVML--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|193065554|ref|ZP_03046622.1| deoxyribodipyrimidine photolyase [Escherichia coli E22]
gi|194429065|ref|ZP_03061596.1| deoxyribodipyrimidine photolyase [Escherichia coli B171]
gi|260842916|ref|YP_003220694.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
O103:H2 str. 12009]
gi|415804922|ref|ZP_11501153.1| deoxyribodipyrimidine photo-lyase [Escherichia coli E128010]
gi|416346215|ref|ZP_11679486.1| Deoxyribodipyrimidine photolyase [Escherichia coli EC4100B]
gi|417161485|ref|ZP_11997721.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0741]
gi|417173694|ref|ZP_12003490.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.2608]
gi|417179431|ref|ZP_12007421.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 93.0624]
gi|417242575|ref|ZP_12037792.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 9.0111]
gi|417622024|ref|ZP_12272350.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_H.1.8]
gi|419298986|ref|ZP_13841000.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC11C]
gi|419315583|ref|ZP_13857408.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC12A]
gi|419321430|ref|ZP_13863166.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC12B]
gi|419327648|ref|ZP_13869277.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC12C]
gi|419333082|ref|ZP_13874641.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC12D]
gi|419338484|ref|ZP_13879970.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC12E]
gi|419344334|ref|ZP_13885716.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13A]
gi|419348772|ref|ZP_13890125.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13B]
gi|419353685|ref|ZP_13894968.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13C]
gi|419359015|ref|ZP_13900245.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13D]
gi|419364042|ref|ZP_13905223.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13E]
gi|419871209|ref|ZP_14393269.1| deoxyribodipyrimidine photolyase [Escherichia coli O103:H2 str.
CVM9450]
gi|420390115|ref|ZP_14889383.1| deoxyribodipyrimidine photolyase [Escherichia coli EPEC C342-62]
gi|432812811|ref|ZP_20046657.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE101]
gi|192926843|gb|EDV81469.1| deoxyribodipyrimidine photolyase [Escherichia coli E22]
gi|194412896|gb|EDX29187.1| deoxyribodipyrimidine photolyase [Escherichia coli B171]
gi|257758063|dbj|BAI29560.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
O103:H2 str. 12009]
gi|320198176|gb|EFW72780.1| Deoxyribodipyrimidine photolyase [Escherichia coli EC4100B]
gi|323158756|gb|EFZ44769.1| deoxyribodipyrimidine photo-lyase [Escherichia coli E128010]
gi|345385472|gb|EGX15316.1| deoxyribodipyrimidine photo-lyase [Escherichia coli STEC_H.1.8]
gi|378155774|gb|EHX16830.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC11C]
gi|378173681|gb|EHX34515.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC12B]
gi|378174037|gb|EHX34865.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC12A]
gi|378175651|gb|EHX36466.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC12C]
gi|378188762|gb|EHX49356.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13A]
gi|378190279|gb|EHX50864.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC12D]
gi|378193388|gb|EHX53927.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC12E]
gi|378204434|gb|EHX64850.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13B]
gi|378207663|gb|EHX68052.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13D]
gi|378207976|gb|EHX68361.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13C]
gi|378218790|gb|EHX79060.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC13E]
gi|386174021|gb|EIH46022.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 99.0741]
gi|386176386|gb|EIH53865.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3.2608]
gi|386186093|gb|EIH68810.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 93.0624]
gi|386211563|gb|EII22019.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 9.0111]
gi|388337681|gb|EIL04178.1| deoxyribodipyrimidine photolyase [Escherichia coli O103:H2 str.
CVM9450]
gi|391314439|gb|EIQ71989.1| deoxyribodipyrimidine photolyase [Escherichia coli EPEC C342-62]
gi|431356931|gb|ELG43617.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE101]
Length = 472
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 239/488 (48%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P P + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVML--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|425070683|ref|ZP_18473789.1| hypothetical protein HMPREF1310_00074 [Proteus mirabilis WGLW4]
gi|404600130|gb|EKB00579.1| hypothetical protein HMPREF1310_00074 [Proteus mirabilis WGLW4]
Length = 476
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 152/485 (31%), Positives = 228/485 (47%), Gaps = 29/485 (5%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPAL--AAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKH 58
M +VWFR DLRV DN AL A V A+F P + ++ + ++
Sbjct: 1 MHSAPVHLVWFRHDLRVTDNKALFYACQNTQAQVHAIFTVTPAQWKAHHMALSQQAFIHD 60
Query: 59 SLSHLDSSLRSLG---TSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRA 115
+L +L SL L T +++ D+ S+++ + T LFFNH Y RD +
Sbjct: 61 ALLNLSHSLAKLNIPLTLIISDTYADAAQSIVDYCQQHQVTALFFNHQYALNEQNRDKKV 120
Query: 116 KEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI 175
E L A V ++ ++ P +V QG+ + F F L + D LP I
Sbjct: 121 ME-LLAHNTTVYCYHDNVFVPPGNVVTQQGEMYKVFTPFRTAFLRLFLSQDNASLPAPEI 179
Query: 176 NSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
+ + P +F + + A + L F +I Y+K R
Sbjct: 180 RAHQKTVSPLSAPLFALPISS------TKMFPASEQAALQRLKQFCYERVIHYAKWRDIP 233
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
TS LSP+L G VSVR+ F+ R+ Q + + S ++ + RE+ ++
Sbjct: 234 AIDGTSQLSPYLAIGLVSVRQCFN--RLYQTE--PDFLENNHSSAFVWFNELVWREFYQH 289
Query: 296 MSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
+ +P S + + W D+ F AW QG TG+P++DA MR+L TGW+H+R+
Sbjct: 290 LIVANPSLSKQIAFQPWTENIRWRNDQTEFTAWTQGLTGFPIIDAAMRQLNQTGWMHNRL 349
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R++ +SF VK L + WRWG YF L+D D S+ GWQ+ + T D + RI NP
Sbjct: 350 RMLTASFLVKDLLIDWRWGENYFMSQLIDGDFASNNGGWQWAASTGTDAVPYFRIFNPTT 409
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGS--NYPFPIVRIDA 472
+G KFDP+GE++R WLPELA +P IH P I+ G +YP PIV D
Sbjct: 410 QGRKFDPDGEFIRHWLPELADVPDRDIHTP--------SEWAIKTGHYLDYPQPIV--DH 459
Query: 473 AKCRL 477
AK R+
Sbjct: 460 AKARV 464
>gi|351729025|ref|ZP_08946716.1| deoxyribodipyrimidine photo-lyase [Acidovorax radicis N35]
Length = 496
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 163/493 (33%), Positives = 239/493 (48%), Gaps = 42/493 (8%)
Query: 8 IVWFRRDLRVEDNPALA-AGVRAGAVIAVFIWAPE--EEGPYYPGRVSRWWLKHSLSHLD 64
+VWFRRDLR D AL A + V F++ E P RV +++ SL LD
Sbjct: 15 LVWFRRDLRANDQAALYRALTQCQQVHCAFVFDREILNALPRTDRRVE--FIRESLVELD 72
Query: 65 SSLRSL------GTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEA 118
+LR L G ++ ++D++ +L A G +F NH +P +L RD + +
Sbjct: 73 ETLRMLSGHAQGGLIVLHAVASDAIPAL---ANALGVQAVFANHDDEPQALERDSQVRTQ 129
Query: 119 LTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL------SMPFDPDAPL 169
L G A +F + E +V G P++ F + W K + S P + A
Sbjct: 130 LATAGRAFHTFKDHTILERSEVLTQTGNPYSVFTPYKNAWLKKVDAFQLTSYPVERHAHR 189
Query: 170 LPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYS 229
L P R + +L FE + AL G S A + F+ G + Y
Sbjct: 190 LAP-RPQEHRQAVPTLASLGFE------ATALSQLKLPTGASGAQQLFDDFL-GRIERYE 241
Query: 230 KNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGL 289
R S+LS HL FG +S R L R A+ G+ +L +
Sbjct: 242 DTRNFPAVKGPSYLSVHLRFGTISPRL---LART-----AHGLMLQGNPGATTWLSELIW 293
Query: 290 REYSRYMSFNHPY--SHE-RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWA 346
R++ + +HP+ H +P +++ S + F AW +GRTGYPLVDA M ++
Sbjct: 294 RDFYFQILHHHPHVVGHSFKPAYDAIQWESGPEADALFAAWCEGRTGYPLVDAAMAQINQ 353
Query: 347 TGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAF 406
TG++H+R+R+VV+SF VK L + WRWG YF L D DL ++ GWQ+ S + D + +
Sbjct: 354 TGYMHNRLRMVVASFLVKDLGIDWRWGEAYFATHLNDFDLAANNGGWQWASSSGCDAQPY 413
Query: 407 DRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFP 466
RI NP + KFDP G+++RR LP+LA LPT+ +H PW A LQ AG+ LG YP P
Sbjct: 414 FRIFNPVSQSEKFDPEGKFIRRCLPQLAGLPTKALHAPWLARPMELQGAGVRLGDTYPLP 473
Query: 467 IVRIDAAKCRLDE 479
+V D A+ R E
Sbjct: 474 VVEHDTARHRTLE 486
>gi|453062216|gb|EMF03207.1| deoxyribodipyrimidine photolyase [Serratia marcescens VGH107]
Length = 476
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 150/486 (30%), Positives = 226/486 (46%), Gaps = 42/486 (8%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VW R DLR+ DN AL A V+AVFI P++ + + SL +
Sbjct: 5 LVWLRNDLRITDNKALHAACSDPKARVLAVFIATPQQWRQHEMSPRQAALIHTSLRAVQQ 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L G +L TD S+ L + + LF+N Y+ RD R ++ L +
Sbjct: 65 ALAQKGIALHCHAGTDFAASIDWLADYCRREQVDALFYNRQYELNERRRDARLEQQLNGR 124
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
+ F+ LL P V G+ + + F + + D LP +I +
Sbjct: 125 -VTCHGFDDSLLLPPGSVLTGGGEMYKVYTPFRNAFIQRLTESDVSCLPAPKIRADGALP 183
Query: 183 CPSDTLVFE-------DESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
P F+ D+ G A L R L F + +Y + R
Sbjct: 184 APEAPAAFDYPAADIGDDYPAGEEAALQR------------LRAFCREQVQDYLRQRDLP 231
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
A TS LSP+L G +S R+ F+ +R + E ++G + +L + RE+ R+
Sbjct: 232 AIAGTSSLSPYLAIGMLSPRQCFNRLR-AECPQLLEDRESGAFA---WLNELIWREFYRH 287
Query: 296 MSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
+ +P RP + W D +AW++G TGYP+VDA MR+L ATGW+H+R+
Sbjct: 288 LLVAYPELCRHRPFIAWTDKVRWCDDAAKLQAWQRGETGYPIVDAAMRQLNATGWMHNRL 347
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R++ +SF VK L + WR G +YF LLD DL ++ GWQ+ + T D + RI NP
Sbjct: 348 RMISASFLVKDLLIDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTT 407
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHP--WNAPESVLQAAGIELGSNYPFPIVRIDA 472
+G +FDP G ++R+WLPELA +P IHHP W + + NYP PIV D
Sbjct: 408 QGERFDPQGTFIRKWLPELADVPDNDIHHPHRWAEKQPCV--------LNYPLPIV--DH 457
Query: 473 AKCRLD 478
+ RL+
Sbjct: 458 KQARLE 463
>gi|409989683|ref|ZP_11273203.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis str.
Paraca]
gi|409939453|gb|EKN80597.1| deoxyribodipyrimidine photo-lyase [Arthrospira platensis str.
Paraca]
Length = 474
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 149/475 (31%), Positives = 230/475 (48%), Gaps = 38/475 (8%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPE--EEGPYYPGRVSRWWLKHSLSHLD 64
+ W RRDLR+ DN LAA R + V+ VF PE P RV+ ++ L L
Sbjct: 6 LFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDPEILSGDDIAPVRVA--YMLGCLQCLQ 63
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ G+ L+ + + L ++ A GA +++N +PL RD +E+LT GI
Sbjct: 64 EDYQRGGSQLLIIQD-NPAQGLRKLAVALGAIAIYWNRDVEPLPRQRDRSVEESLTEVGI 122
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V +F +L+ P + +P+ + +W K + P P+ P +R+ S ++
Sbjct: 123 KVETFWDQVLHSPEAIFTGSKEPYKVYTPYWRKWIQQP-KPE----PCQRLKSTGLTEAQ 177
Query: 185 SDTLVFEDESEKGSNAL-----LARAWS------PGWSNADKALTTFINGPLIEYSKNRR 233
+ E G+ AL L WS PG + A L F + + EY + R
Sbjct: 178 EKAAL-----EAGAIALPTAKDLGFIWSEPFILEPGETAASDRLEIFCDRAIYEYDEGRN 232
Query: 234 KADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYS 293
TS LSP L FG + +R ++ + +++ ++A + + + + RE+
Sbjct: 233 FPAIDGTSVLSPALRFGAIGIRTLWQ--KTQEIMALTRSDEA-RHHIQTWQQELAWREFY 289
Query: 294 RYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDR 353
+ ++ P F W ++ +F+AW QGRTGYP+VDA MR+L TGW+H+R
Sbjct: 290 QQALYHFPALATGAFRQPFDRFPWSDNQEHFQAWCQGRTGYPIVDAAMRQLNETGWMHNR 349
Query: 354 IRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQ 413
R++V+SF K L + W+WG KYF TL+D DL S+ GWQ+ S + D + RI NP
Sbjct: 350 CRMIVASFLTKDLIINWQWGEKYFMQTLIDGDLASNNGGWQWSSSSGMDPKPL-RIFNPA 408
Query: 414 FEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
+ K+DP EY+R+WLPEL L T H S +G YP PIV
Sbjct: 409 SQTQKYDPEAEYIRQWLPELRNLDTA---HLVTGKIS----SGDRQACGYPQPIV 456
>gi|375289840|ref|YP_005124380.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae 241]
gi|376244673|ref|YP_005134912.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae HC01]
gi|371579511|gb|AEX43178.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae 241]
gi|372107303|gb|AEX73364.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae HC01]
Length = 446
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 153/442 (34%), Positives = 215/442 (48%), Gaps = 43/442 (9%)
Query: 8 IVWFRRDLRVEDNPALAAG---VRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
+VWFR DLRV DNPAL VRA ++ E G G +WWL HSL L
Sbjct: 6 VVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLALS 65
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
L G L S D ++ L ++V + GAT + N YDP + D +A G+
Sbjct: 66 EQLAQRGVRLHVL-SGDPLTLLPQLVTSCGATAVTMNRRYDPAARSIDDAFVADASAHGV 124
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAF----WEKCLSMPFDPDAPLLPPKRINSGDM 180
V F LL EP ++ G + F F + +P D A PPK D
Sbjct: 125 EVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLDTLAA--PPKSAQPID- 181
Query: 181 SRCPSDTLVFEDESEKGSNAL----LARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
DT ++ G +A +++AW+PG A +AL ++ L Y ++R + D
Sbjct: 182 -----DTETQAAIADLGWDAWWAASISKAWTPGEPAAREALAE-LDDILPRYLEDRDRPD 235
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LSP L FGE+SV +V W + G F + + R+++ +
Sbjct: 236 IDGTSRLSPRLRFGELSVAEV----------WNHAHTSEG------FRRQLMWRDFAWHR 279
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKA----WRQGRTGYPLVDAGMRELWATGWLHD 352
HP + F W D G F+A WR GRTG LVD GMRELWATG +H+
Sbjct: 280 LDAHPDMATANIRPEFDRFPW--DGGDFEAELNAWRHGRTGIALVDTGMRELWATGTMHN 337
Query: 353 RIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNP 412
R+R+V +S VK L + WR G ++FWDTL+DAD S+ WQ+++G+ D + RI NP
Sbjct: 338 RVRMVAASLLVKNLGIHWRHGEQWFWDTLVDADPASNPFNWQWVAGSGDDAAPYFRIFNP 397
Query: 413 QFEGYKFDPNGEYVRRWLPELA 434
+ +FDP+G Y RWLP ++
Sbjct: 398 DTQARRFDPDGTYRTRWLPIMS 419
>gi|16799672|ref|NP_469940.1| hypothetical protein lin0597 [Listeria innocua Clip11262]
gi|16413037|emb|CAC95829.1| lin0597 [Listeria innocua Clip11262]
Length = 467
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 139/468 (29%), Positives = 229/468 (48%), Gaps = 31/468 (6%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S++WFRRDLRV DN AL + +I +F PE+ + G S S++H
Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEEDLILLFQVNPEQ---FIKGSPSHQAFFASVAHFQQ 58
Query: 66 SL-RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
L ++ ++ + + L E K ++FFN RD A+ + I
Sbjct: 59 ELNKNTHLQIMFGEPIELLKQLKE--KIPTWDKVFFNRDETGYGASRDEAARAFFADKEI 116
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEK----CLSMPFDPDAPLLPPKRINSGDM 180
V S++ L+ +V + + + F +++K MP L P++I +
Sbjct: 117 TVHSYHDSYLHSAEEVKKSATEYYKIFTPYYKKWREEIKEMPL---KVTLKPEKIRKESL 173
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
P+ +E++ + L A+ G A+ L F+ L +Y K R T
Sbjct: 174 --FPN----YEEQFRELIQDL--PAFDSGEKAANTRLANFVKEDLADYDKARDVPALDKT 225
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LS +L GE+S+R V+ ++ ++ A EG F K + R++ + +
Sbjct: 226 SHLSRYLRTGEISIRTVWQALQKEE---ATEGRAT-------FEKELCWRDFYNMIYVSF 275
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
P P+ + +F W + +FK W+ G+TG+PLVDA MR+L TGW+H+R+R++ +S
Sbjct: 276 PKQKNEPIQENYRFIEWENNREFFKKWQDGQTGFPLVDAAMRQLKETGWMHNRLRMITAS 335
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L + WR+G KYF L+D D S+ GWQ+ + T D + RI NP + KFD
Sbjct: 336 FLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSEKFD 395
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
P+G ++R+++ EL LP ++IH P E+ + G+ LG +YP PI+
Sbjct: 396 PDGTFIRKYVKELRDLPDKFIHQPEKMSETEQKEHGLILGKDYPLPII 443
>gi|448240986|ref|YP_007405039.1| FAD-binding deoxyribodipyrimidine photolyase [Serratia marcescens
WW4]
gi|445211350|gb|AGE17020.1| FAD-binding deoxyribodipyrimidine photolyase [Serratia marcescens
WW4]
Length = 476
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 147/479 (30%), Positives = 226/479 (47%), Gaps = 28/479 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VW R DLR+ DN AL A V+AVFI P++ + + SL +
Sbjct: 5 LVWLRNDLRITDNKALHAACSDPKARVLAVFIATPQQWRQHEMAPRQAALIHASLRAVQQ 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L G +L +D S+ L + + LF+N Y+ RD R ++ L +
Sbjct: 65 ALAQKGIALHCHACSDFAASIDWLADYCRREQVDALFYNRQYELNERRRDARLEQQLNGR 124
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
+ F+ LL P V G+ + + F + + D LP +I +
Sbjct: 125 -VTCHGFDDSLLLPPGSVLTGGGEMYKVYTPFRNAFIQRLTESDVSCLPAPKIRADGALL 183
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
P F+ + N + G A + L F + +Y + R A TS
Sbjct: 184 APEAPAAFDYPAADIGND-----YPAGEEAALQRLRAFCREQVQDYLRQRDLPAIAGTSS 238
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP- 301
LSP+L G +S R+ F+ +R + E ++G + +L + RE+ R++ +P
Sbjct: 239 LSPYLAIGALSPRQCFNRLR-AECPQLLEDRESGAFA---WLNELIWREFYRHLLVAYPE 294
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
RP + W D +AW++G TGYP+VDA MR+L ATGW+H+R+R++ +SF
Sbjct: 295 LCRHRPFIAWTDKVRWCDDAAKLQAWQRGETGYPIVDAAMRQLNATGWMHNRLRMISASF 354
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L + WR G +YF LLD DL ++ GWQ+ + T D + RI NP +G +FDP
Sbjct: 355 LVKDLLIDWRAGERYFMSQLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFDP 414
Query: 422 NGEYVRRWLPELARLPTEWIHHP--WNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLD 478
G ++R+WLPELA +P IHHP W + + NYP PIV D + RL+
Sbjct: 415 QGTFIRKWLPELADVPDNDIHHPHLWAEKQPCV--------LNYPLPIV--DHKQARLE 463
>gi|194433989|ref|ZP_03066260.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae 1012]
gi|417671427|ref|ZP_12320918.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 155-74]
gi|194417754|gb|EDX33852.1| deoxyribodipyrimidine photolyase [Shigella dysenteriae 1012]
gi|332096470|gb|EGJ01466.1| deoxyribodipyrimidine photo-lyase [Shigella dysenteriae 155-74]
Length = 472
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 153/481 (31%), Positives = 239/481 (49%), Gaps = 37/481 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+ WFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVDVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIKPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCENGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSVSLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P RP + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW +Q AG++L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAVHEPWK----WVQKAGVKL--DYPQPIVEHKEARV 459
Query: 476 R 476
+
Sbjct: 460 Q 460
>gi|117622905|ref|YP_851818.1| deoxyribodipyrimidine photolyase [Escherichia coli APEC O1]
gi|218557628|ref|YP_002390541.1| deoxyribodipyrimidine photolyase [Escherichia coli S88]
gi|237707328|ref|ZP_04537809.1| deoxyribodipyrimidine photolyase [Escherichia sp. 3_2_53FAA]
gi|386598434|ref|YP_006099940.1| deoxyribodipyrimidine photo-lyase [Escherichia coli IHE3034]
gi|386605390|ref|YP_006111690.1| deoxyribodipyrimidine photolyase [Escherichia coli UM146]
gi|416337796|ref|ZP_11674110.1| Deoxyribodipyrimidine photolyase [Escherichia coli WV_060327]
gi|419945326|ref|ZP_14461772.1| deoxyribodipyrimidine photolyase [Escherichia coli HM605]
gi|422359050|ref|ZP_16439699.1| FAD binding domain of DNA photolyase [Escherichia coli MS 110-3]
gi|422748275|ref|ZP_16802188.1| DNA photolyase [Escherichia coli H252]
gi|422753323|ref|ZP_16807150.1| DNA photolyase [Escherichia coli H263]
gi|422839181|ref|ZP_16887153.1| deoxyribodipyrimidine photo-lyase [Escherichia coli H397]
gi|432357002|ref|ZP_19600249.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE4]
gi|432361474|ref|ZP_19604659.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE5]
gi|432572651|ref|ZP_19809142.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE55]
gi|432586956|ref|ZP_19823327.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE58]
gi|432596598|ref|ZP_19832881.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE62]
gi|432753455|ref|ZP_19988022.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE22]
gi|432777594|ref|ZP_20011845.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE59]
gi|432786383|ref|ZP_20020549.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE65]
gi|432819975|ref|ZP_20053689.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE118]
gi|432826190|ref|ZP_20059846.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE123]
gi|433004183|ref|ZP_20192621.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE227]
gi|433011392|ref|ZP_20199797.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE229]
gi|433152807|ref|ZP_20337774.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE176]
gi|433162508|ref|ZP_20347267.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE179]
gi|433167517|ref|ZP_20352185.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE180]
gi|115512029|gb|ABJ00104.1| deoxyribodipyrimidine photolyase [Escherichia coli APEC O1]
gi|218364397|emb|CAR02076.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
S88]
gi|226898538|gb|EEH84797.1| deoxyribodipyrimidine photolyase [Escherichia sp. 3_2_53FAA]
gi|294490015|gb|ADE88771.1| deoxyribodipyrimidine photo-lyase [Escherichia coli IHE3034]
gi|307627874|gb|ADN72178.1| deoxyribodipyrimidine photolyase [Escherichia coli UM146]
gi|315287176|gb|EFU46588.1| FAD binding domain of DNA photolyase [Escherichia coli MS 110-3]
gi|320194132|gb|EFW68764.1| Deoxyribodipyrimidine photolyase [Escherichia coli WV_060327]
gi|323952730|gb|EGB48598.1| DNA photolyase [Escherichia coli H252]
gi|323958455|gb|EGB54161.1| DNA photolyase [Escherichia coli H263]
gi|371611202|gb|EHN99728.1| deoxyribodipyrimidine photo-lyase [Escherichia coli H397]
gi|388415881|gb|EIL75789.1| deoxyribodipyrimidine photolyase [Escherichia coli HM605]
gi|430879812|gb|ELC03143.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE4]
gi|430889992|gb|ELC12639.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE5]
gi|431110989|gb|ELE14906.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE55]
gi|431123428|gb|ELE26166.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE58]
gi|431133501|gb|ELE35491.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE62]
gi|431305065|gb|ELF93581.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE22]
gi|431330194|gb|ELG17476.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE59]
gi|431341512|gb|ELG28519.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE65]
gi|431370977|gb|ELG56770.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE118]
gi|431374386|gb|ELG59978.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE123]
gi|431517504|gb|ELH95026.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE227]
gi|431519604|gb|ELH97056.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE229]
gi|431678188|gb|ELJ44196.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE176]
gi|431691178|gb|ELJ56638.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE179]
gi|431693517|gb|ELJ58930.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE180]
Length = 472
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 151/487 (31%), Positives = 234/487 (48%), Gaps = 35/487 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR DN ALAA R + V+A++I P + + + L+ L +
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLNALQN 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L G L+ + D SV ++ +V T LF+N+ Y+ RD +A+ L +
Sbjct: 65 ALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERTL--R 122
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRINS 177
+ F+ ++ P V + + F F W K L MP + PK +S
Sbjct: 123 NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKFRSS 178
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
G + PS TL + +S ++ + A L F EY + R
Sbjct: 179 GSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAV 232
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
TS LS L G +S R+ H + +Q G + ++L + RE+ R++
Sbjct: 233 EGTSRLSASLATGGLSPRQCLHRLLAEQPQVLEGGPGS------VWLNELIWREFYRHLM 286
Query: 298 FNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
+P RP + W + + KAW++G+TGYP+VDA MR+L +TGW+H+R+R+
Sbjct: 287 TYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +G
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFD GE++R+WLPEL +P + +H PW E G+ L +YP PIV A+ R
Sbjct: 407 EKFDREGEFIRQWLPELRDVPGKAVHEPWKWAEKT----GVTL--DYPQPIVDHKEARLR 460
Query: 477 LDEALSE 483
A E
Sbjct: 461 TLAAYEE 467
>gi|399020171|ref|ZP_10722310.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. CF444]
gi|398095823|gb|EJL86155.1| deoxyribodipyrimidine photolyase [Herbaspirillum sp. CF444]
Length = 498
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 163/497 (32%), Positives = 249/497 (50%), Gaps = 50/497 (10%)
Query: 7 SIVWFRRDLRVEDNPALAAGVR-AGAVIAVFIW------APEEEGPYYPGRVSRWWLKHS 59
++VWFRRDLR+ D+ AL +R + V VF++ A +G R+ ++
Sbjct: 7 ALVWFRRDLRISDHAALYYALRQSKQVYCVFVYDRDILDALLTDGLQADRRIE--FILAC 64
Query: 60 LSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
++ LD++LR+ G +L+ R + + + GA +F NH Y+P ++ RD K+ L
Sbjct: 65 IAELDAALRAAGGALIV-RHAPAQQDIPALAAELGADAVFANHDYEPQAIKRDAAVKKQL 123
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLS--------MPFDPDA- 167
G + ++ +++E +V +PF+ F + W LS P+ DA
Sbjct: 124 EQDGRQLLTYKDQVIFEKDEVLSLASRPFSVFTPYKNAWMNKLSGPGGDFYLKPYPVDAY 183
Query: 168 --PLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPL 225
L PP + + + D L F + K G S A + L F+ L
Sbjct: 184 FAQLAPPSKQHHKALPTL--DDLGFLPTNLKDLRI------PTGMSGAAQLLEDFLPR-L 234
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
+Y R S+LS HL FG +++R LVR V G AG ++L
Sbjct: 235 GKYGDTRDFPAVKGPSYLSVHLRFGTIAIRT---LVR-AAVDAMRIG--AGRRGAPVWLS 288
Query: 286 SIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEG------YFKAWRQGRTGYPLVDA 339
+ R++ + F+HP ER W EG F AW +GRTGYPLVDA
Sbjct: 289 ELVWRDFYFMILFHHPRVVERSFKSDYDAIQW---EGGKRARESFAAWCEGRTGYPLVDA 345
Query: 340 GMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGT 399
M +L TG++H+R+R+V +SF K L + WRWG KYF D L D DL ++ GWQ+ S +
Sbjct: 346 AMLQLNQTGYMHNRLRMVTASFLTKDLGIDWRWGEKYFADQLNDFDLSANNGGWQWASSS 405
Query: 400 IPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIEL 459
D + + RI NP + +FD G+++RR+LP+LA LP ++IH PW P +L+AAG+ L
Sbjct: 406 GCDAQPYFRIFNPITQSERFDAEGKFIRRYLPQLAGLPDKYIHAPWLCPADLLKAAGVTL 465
Query: 460 GSNYPFPIVRIDAAKCR 476
G +YP P+V D A+ R
Sbjct: 466 GKDYPLPLV--DHAEAR 480
>gi|386015078|ref|YP_005933356.1| deoxyribodipyrimidine photo-lyase PhrB [Pantoea ananatis AJ13355]
gi|327393138|dbj|BAK10560.1| deoxyribodipyrimidine photo-lyase PhrB [Pantoea ananatis AJ13355]
Length = 475
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 151/491 (30%), Positives = 232/491 (47%), Gaps = 49/491 (9%)
Query: 8 IVWFRRDLRVEDNPALAAGVRA--GAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VW R DLR+ DN AL A VIA+FI P + + ++ SL L S
Sbjct: 5 LVWLRNDLRINDNLALHAACTQPDARVIALFIATPGQWQQHEMAARQVAFIHQSLDMLQS 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
SL G L + D S+ L+ + +LF+N+ Y+ RD A++ L
Sbjct: 65 SLAERGFPLHFHQCDDFAASIDFLVGFCQKQQVDKLFYNYQYEVNERERDASAEKRLHEA 124
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWE-----------KCLSMPFDPD-APLL 170
+ + F+ LL P + G+ + F F + +C+ P + APL
Sbjct: 125 NVVCQGFDDSLLLPPGSIQTGDGEMYKVFTPFSKAFLRRLQQGLPECVPAPKAREGAPLK 184
Query: 171 PPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSK 230
PK + D + DT +F PG A K L F +++Y+K
Sbjct: 185 EPKSLPPFDYPKADIDTSLF----------------PPGEQAAVKRLREFAKQAVLDYAK 228
Query: 231 NRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDES-VNLFLKSIGL 289
R +TS LS +L G +S R+ H + +E KA + S +++ +
Sbjct: 229 QRDLPALDSTSRLSVYLSTGVLSPRQCLHRI-------LHEQPKALESSPAAVWINELIW 281
Query: 290 REYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATG 348
RE+ R++ HP +P + + +W + +F AW+ G+TGYP+VDA MR++ G
Sbjct: 282 REFYRHLIVAHPRLCKHQPFVHWTRNVAWQRNSAHFDAWKAGKTGYPIVDAAMRQMQTIG 341
Query: 349 WLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDR 408
W+H+R+R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + R
Sbjct: 342 WMHNRLRMITASFLVKDLLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFR 401
Query: 409 IDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
I NP +G +FD GE++RR+LPEL +P IH P Q +L +YP PIV
Sbjct: 402 IFNPTTQGERFDKEGEFIRRYLPELKEVPDSDIHQ----PHQWAQKNNKKL--DYPAPIV 455
Query: 469 -RIDAAKCRLD 478
DA K LD
Sbjct: 456 EHKDARKKTLD 466
>gi|422782518|ref|ZP_16835303.1| DNA photolyase [Escherichia coli TW10509]
gi|323976322|gb|EGB71412.1| DNA photolyase [Escherichia coli TW10509]
Length = 472
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 153/490 (31%), Positives = 239/490 (48%), Gaps = 55/490 (11%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLS---- 61
+VWFR+DLR+ DN ALAA R + V+A++I P R W H++S
Sbjct: 5 LVWFRQDLRLHDNLALAAACRYSSARVLALYIATP------------RQWAAHNMSPRQA 52
Query: 62 -HLDSSLRSLGTSLVTK------RSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLV 110
+++ L L +L K D ++ +E+VK A T LF+N+ Y+
Sbjct: 53 EFINAQLNGLQIALAEKGIPLLFHEVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERA 112
Query: 111 RDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSMPFDPDA 167
RD + + L + + F+ ++ P V + + F F W K L P+
Sbjct: 113 RDVQVERTL--RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREG-GPEC 169
Query: 168 PLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIE 227
+ PK +SG + PS TL + +S ++ + A L F E
Sbjct: 170 -VAAPKVRSSGSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGE 222
Query: 228 YSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSI 287
Y + R TS LS L G +S R+ H + +Q + G AG +++L +
Sbjct: 223 YEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLNEL 276
Query: 288 GLREYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWA 346
RE+ R++ HP RP + W + + KAW++G+TGYP+VDA MR+L +
Sbjct: 277 IWREFYRHLMTYHPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNS 336
Query: 347 TGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAF 406
+GW+H+R+R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D +
Sbjct: 337 SGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPY 396
Query: 407 DRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFP 466
RI NP +G KFD GE++RRWLPEL +P + +H PW + +G+ L +YP P
Sbjct: 397 FRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWADK----SGVTL--DYPQP 450
Query: 467 IVRIDAAKCR 476
IV A+ R
Sbjct: 451 IVDHKEARVR 460
>gi|271499741|ref|YP_003332766.1| Deoxyribodipyrimidine photo-lyase [Dickeya dadantii Ech586]
gi|270343296|gb|ACZ76061.1| Deoxyribodipyrimidine photo-lyase [Dickeya dadantii Ech586]
Length = 481
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 156/492 (31%), Positives = 235/492 (47%), Gaps = 28/492 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRA--GAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR DLR+ DN AL A + V AVFI P++ + +L +L L
Sbjct: 5 LVWFRHDLRLTDNLALHAACQDPDARVEAVFIATPQQWASHDMAPCQAAFLLGNLRCLQQ 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L+ G L ++ D SV L + + TQLF+N Y+ RD + +AL
Sbjct: 65 ALQEKGIPLHYQQCDDFAASVRWLADFCRERQVTQLFYNRQYEWNERQRDGQLTQALA-- 122
Query: 123 GIAV-RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLP-PKRINSGDM 180
G+ V R F+ LL P V G+ + F F + D LP P GD+
Sbjct: 123 GVTVCREFDDSLLLPPGSVVTGSGEMYKVFTPFRTAFIKRLQLQDVSSLPAPVTRQQGDV 182
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
+ P + + G + A + L F + Y R T
Sbjct: 183 TLAPLAPFDYPQAEVHADFPV-------GEAAAVQRLRQFCREQVAFYHALRDLPARPAT 235
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM-SFN 299
S LSP+L G +S R+ F+ +R++ W ++ N + RE+ R++ F+
Sbjct: 236 SKLSPYLALGILSPRQCFNRLRMEHPDWLSQPEGGAFTWFN----ELVWREFYRHLLVFS 291
Query: 300 HPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVS 359
+P +G + +W AW++G TGYP+VDA MR+L TGW+H+R+R++ +
Sbjct: 292 PSLCRHQPFIGWTRRVAWRHAPDELAAWQRGETGYPIVDAAMRQLNQTGWMHNRLRMICA 351
Query: 360 SFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKF 419
SF VK L + WR G +YF LLD DL ++ GWQ+ + T D + RI NP +G +F
Sbjct: 352 SFLVKDLLIDWREGERYFMSRLLDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERF 411
Query: 420 DPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDE 479
DP+GE++R W+PELA++P + +H P + AA +YP PIV A+ R
Sbjct: 412 DPDGEFIRHWIPELAQIPGKAVHQPHD------WAACQHRRIDYPAPIVDHKQARTRTLA 465
Query: 480 ALSEMWQQEAAS 491
A E +QEAAS
Sbjct: 466 AF-EAAKQEAAS 476
>gi|419288166|ref|ZP_13830281.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC11A]
gi|419293503|ref|ZP_13835562.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC11B]
gi|378135668|gb|EHW96971.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC11A]
gi|378145700|gb|EHX06856.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC11B]
Length = 472
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 239/488 (48%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P P + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAMHEPWKWA----QKAGVML--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|332524149|ref|ZP_08400379.1| deoxyribodipyrimidine photo-lyase [Rubrivivax benzoatilyticus JA2]
gi|332107488|gb|EGJ08712.1| deoxyribodipyrimidine photo-lyase [Rubrivivax benzoatilyticus JA2]
Length = 505
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 160/492 (32%), Positives = 245/492 (49%), Gaps = 43/492 (8%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPE--EEGPYYPGRVSRWWLKHSLSHL 63
++VW RRDLR EDN AL +RA V VF++ PE E P RV +++ S+ +
Sbjct: 8 ALVWLRRDLRTEDNAALYHALRAARRVWCVFVFDPEILEPLPRADRRVE--FIRDSVVGV 65
Query: 64 DSSLRSL-------GTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAK 116
D+ LR+L G L+ R + + + A GA ++ +H +P +L RD R +
Sbjct: 66 DAELRALAASHGIDGAGLIV-RHGRPLQEIPRLAAALGAQAVYASHDDEPEALARDARVR 124
Query: 117 EALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL------SMPFDPDA 167
AL GIA +++E +V G PF+ F + W K L S P + A
Sbjct: 125 GALADAGIAFHGSKDHVIFERDEVLTQGGGPFSVFTPYRNAWLKKLDDFYLSSYPVERHA 184
Query: 168 PLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIE 227
L PK +G+ +D + FE S L A G + + L F+ +
Sbjct: 185 GALAPK--PAGETLPTLAD-IGFE------STNLHALKLPSGPAGGRELLADFLE-RVDH 234
Query: 228 YSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSI 287
Y+ R S+L PHL FG VS+R++ A++ AG ++L +
Sbjct: 235 YADWRDFPAVKGPSYLGPHLRFGTVSIRRL--------AREAHQRLTAGSRGAEVWLSEL 286
Query: 288 GLREYSRYMSFNHPY---SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMREL 344
R++ + +HP +P L + + F AW +GRTGYP+VDA M +L
Sbjct: 287 VWRDFYHQLLHHHPRVVGGCFKPEYDRLHWEHGKHADELFAAWCEGRTGYPIVDAAMHQL 346
Query: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 404
TG++H+R+R++ +SF K L + WR G +F L D DL S+ GWQ+ + T D +
Sbjct: 347 TRTGYMHNRLRMISASFLTKDLGIDWRRGEAWFARHLNDFDLASNNGGWQWAASTGCDAQ 406
Query: 405 AFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
+ RI NP + +FDP G ++RR+LP+LA+LP +H PW A + L AAG+ LG +YP
Sbjct: 407 PYFRIFNPVSQSERFDPEGRFIRRYLPQLAKLPDTLLHAPWRARPADLAAAGVVLGRDYP 466
Query: 465 FPIVRIDAAKCR 476
P+V + A+ R
Sbjct: 467 APVVAHEEARER 478
>gi|432552665|ref|ZP_19789396.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE47]
gi|431086950|gb|ELD92966.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE47]
Length = 472
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 151/487 (31%), Positives = 234/487 (48%), Gaps = 35/487 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR DN ALAA R + V+A++I P + + + L+ L +
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAVHNVSPRQAELINTQLNALQN 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L G L+ + D SV ++ +V T LF+N+ Y+ RD +A+ L +
Sbjct: 65 ALAEKGIPLLFREVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERTL--R 122
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRINS 177
+ F+ ++ P V + + F F W K L MP + PK +S
Sbjct: 123 NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRSS 178
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
G + PS TL + +S ++ + A L F EY + R
Sbjct: 179 GSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAV 232
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
TS LS L G +S R+ H + +Q G + ++L + RE+ R++
Sbjct: 233 EGTSRLSASLATGGLSPRQCLHRLLAEQPQVLEGGPGS------VWLNELIWREFYRHLM 286
Query: 298 FNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
+P RP + W + + KAW++G+TGYP+VDA MR+L +TGW+H+R+R+
Sbjct: 287 TYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +G
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFD GE++R+WLPEL +P + +H PW E G+ L +YP PIV A+ R
Sbjct: 407 EKFDREGEFIRQWLPELRDVPGKAVHEPWKWAEKT----GVTL--DYPQPIVDHKEARLR 460
Query: 477 LDEALSE 483
A E
Sbjct: 461 TLAAYEE 467
>gi|432849009|ref|ZP_20080379.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE144]
gi|431401751|gb|ELG85085.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE144]
Length = 472
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 156/499 (31%), Positives = 242/499 (48%), Gaps = 59/499 (11%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLS---- 61
+VWFR+DLR+ DN ALAA R + V+A++I P R W H++S
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATP------------RQWATHNMSPRQA 52
Query: 62 -HLDSSLRSLGTSLVTK------RSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLV 110
+++ L L +L K R D ++ +E++K A T LF+N+ Y+
Sbjct: 53 KLINAQLNGLRIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERA 112
Query: 111 RDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDP 165
RD + + L + + F+ ++ P V + + F F W K L MP
Sbjct: 113 RDVQVERTL--RNVLCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP--- 167
Query: 166 DAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPL 225
+ PK +SG + PS TL + +S ++ + A L F
Sbjct: 168 -ECVAAPKVRSSGSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGA 220
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
EY + R TS LS L G +S R+ H + +Q + G AG +++L
Sbjct: 221 GEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLN 274
Query: 286 SIGLREYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMREL 344
+ RE+ R++ +P RP + W + + +AW++G+TGYP+VDA MR+L
Sbjct: 275 ELIWREFYRHLITYYPSLCKHRPFIVWTDRVQWQSNSAHLQAWQEGKTGYPIVDAAMRQL 334
Query: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 404
+TGW+H+R+R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 405 AFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
+ RI NP +G KFD GE++R+WLPEL +P + +H PW Q AG+ L +YP
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGVTL--DYP 448
Query: 465 FPIVRIDAAKCRLDEALSE 483
PIV A+ R A E
Sbjct: 449 QPIVDHKEARLRTLAAYEE 467
>gi|420691989|ref|ZP_15175191.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-52]
gi|391568598|gb|EIS16299.1| deoxyribodipyrimidine photo-lyase, partial [Yersinia pestis PY-52]
Length = 467
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 150/479 (31%), Positives = 230/479 (48%), Gaps = 30/479 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR DLRV DN AL A + +VIAVFI P + + +L+ +L HL +
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQHLQA 64
Query: 66 SLRSLGTSLVTKRSTDSVSS---LLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L + G L + D +S L++ + LF++ Y+ +RD L+ +
Sbjct: 65 ALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQLSER 124
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLP-PKRINSGDMS 181
I +SF+ +L P V + + F F + D +P PK ++ +
Sbjct: 125 AITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHAPPVL 184
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
P L F+ + + L G A + L F + +Y + R TS
Sbjct: 185 LSP---LPFDYPQQSVDSQLF----PAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTS 237
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWAN--EGNKAGDESVNLFLKSIGLREYSRYMSFN 299
LSP+L G +S R+ F+ + WA E + D +L + RE+ R++
Sbjct: 238 CLSPYLVLGVLSPRQCFNRL------WAESPEMLENADSGAFTWLNELIWREFYRHLLVA 291
Query: 300 HP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
+P P +G W E KAW+QG+TGYP+VDA MR++ TGW+H+R+R++
Sbjct: 292 YPRLCQHHPFIGWADGVVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMIS 351
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +G +
Sbjct: 352 ASFLVKDLLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGER 411
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
FD +G ++RRWLPELA +P IH PW E Q +YP P+V D + RL
Sbjct: 412 FDKDGVFIRRWLPELAAVPDSDIHQPWRWAERQQQHL------DYPVPLV--DHKQARL 462
>gi|91209744|ref|YP_539730.1| deoxyribodipyrimidine photolyase [Escherichia coli UTI89]
gi|91071318|gb|ABE06199.1| deoxyribodipyrimidine photolyase [Escherichia coli UTI89]
Length = 472
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 153/488 (31%), Positives = 235/488 (48%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR DN ALAA R + V+A++I P + + + L+ L +
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLNALQN 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ R D ++ +E VK A T LF+N+ Y+ RD +A+ L
Sbjct: 65 ALAEKGIPLLF-REVDDFAASVETVKQMCAENRITHLFYNYQYEVNERARDVQAERTL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKFRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q G + ++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQVLEGGPGS------VWLNELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P RP + W + + KAW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++R+WLPEL +P + +H PW E G+ L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRQWLPELRDVPGKAVHEPWKWAEKT----GVTL--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|448343517|ref|ZP_21532441.1| deoxyribodipyrimidine photolyase [Natrinema gari JCM 14663]
gi|445622861|gb|ELY76302.1| deoxyribodipyrimidine photolyase [Natrinema gari JCM 14663]
Length = 469
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 149/465 (32%), Positives = 231/465 (49%), Gaps = 24/465 (5%)
Query: 8 IVWFRRDLRVEDNPALA-AGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+ W RRDLR DN LA A V+ +F+ P P RV+ L +L L S
Sbjct: 3 VHWHRRDLRPGDNRGLARAASTDEPVVPLFVLDPSVLEHASPIRVA--CLLEALESLRSW 60
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
R+ G+ L+ R ++ +++ V A A + +N Y L+ RD + ALT +GIA
Sbjct: 61 YRAHGSDLLVVRG-EASTAVPRVATAHDAATVVWNEDYSGLARKRDQAVRTALTDEGIAA 119
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
S + + +EP + QG ++ F+ FW+K P P + D++ D
Sbjct: 120 ESVHDAIHHEPGSITPNQGDHYSVFSYFWKKWRDRDKRP-----PADEPEASDLAAVSGD 174
Query: 187 TLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPH 246
+ DE G + A + + A + + F +GP+ EY+ R + TS LSPH
Sbjct: 175 PIPSLDEV--GFDDPEATPPTVTTAAARERVADFCSGPIYEYAALRDYPAESGTSRLSPH 232
Query: 247 LHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLRE-YSRYMSFNHPYSHE 305
L +G + R+++ A++G++ ESV F + + RE Y+ ++FN P +
Sbjct: 233 LKWGTIGPRELYAATERAAERAASDGDR---ESVREFQRQLAWREFYAHVLAFN-PNTVT 288
Query: 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV 365
G+ W D +AW+ G TGYP+VDAGMR+L A GW+H+R+R++V+SF K
Sbjct: 289 EDFSGYDNEIDWHDDPDALEAWKAGTTGYPIVDAGMRQLRADGWMHNRVRMLVASFLTKD 348
Query: 366 LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEY 425
L WR G +F + L D D +D GWQ+ T D + + R+ NP +G ++DP+ EY
Sbjct: 349 LLTDWRAGYAWFREKLADHDTANDVGGWQWAGSTGTDAQPYFRVFNPMKQGREYDPDAEY 408
Query: 426 VRRWLPELARLPTEWIH--HPWNAPESVLQAAGIELGSNYPFPIV 468
+R ++PELA E IH H PE + +YP PIV
Sbjct: 409 IREYVPELADATAEEIHGWHDLEPPERE------RIAPDYPGPIV 447
>gi|432405530|ref|ZP_19648252.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE28]
gi|430932447|gb|ELC52870.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE28]
Length = 470
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 155/488 (31%), Positives = 238/488 (48%), Gaps = 39/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L +
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLNALQN 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ R D ++ +E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLF-REVDDFAASVEIVKQVCAENRVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGAIDPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P RP + W + + KAW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++R+WLPEL +P +H PW E G+ L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRQWLPELRDVPA--VHEPWKWAEKT----GVTL--DYPQPIVDHKEARL 457
Query: 476 RLDEALSE 483
R A E
Sbjct: 458 RTLAAYEE 465
>gi|26246677|ref|NP_752717.1| deoxyribodipyrimidine photolyase [Escherichia coli CFT073]
gi|227884323|ref|ZP_04002128.1| deoxyribodipyrimidine photolyase [Escherichia coli 83972]
gi|300989880|ref|ZP_07179009.1| FAD binding domain of DNA photolyase [Escherichia coli MS 45-1]
gi|301046034|ref|ZP_07193214.1| FAD binding domain of DNA photolyase [Escherichia coli MS 185-1]
gi|386628250|ref|YP_006147970.1| deoxyribodipyrimidine photolyase [Escherichia coli str. 'clone D
i2']
gi|386633170|ref|YP_006152889.1| deoxyribodipyrimidine photolyase [Escherichia coli str. 'clone D
i14']
gi|386638069|ref|YP_006104867.1| deoxyribodipyrimidine photolyase PhrB [Escherichia coli ABU 83972]
gi|422365262|ref|ZP_16445764.1| FAD binding domain of DNA photolyase [Escherichia coli MS 153-1]
gi|432435293|ref|ZP_19677694.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE188]
gi|432455579|ref|ZP_19697780.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE201]
gi|432494518|ref|ZP_19736336.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE214]
gi|432503357|ref|ZP_19745094.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE220]
gi|432522802|ref|ZP_19759941.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE230]
gi|432567488|ref|ZP_19804015.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE53]
gi|432591767|ref|ZP_19828096.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE60]
gi|432606534|ref|ZP_19842729.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE67]
gi|432650177|ref|ZP_19885939.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE87]
gi|432782556|ref|ZP_20016742.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE63]
gi|432977374|ref|ZP_20166199.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE209]
gi|432994445|ref|ZP_20183061.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE218]
gi|432998863|ref|ZP_20187403.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE223]
gi|433057009|ref|ZP_20244093.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE124]
gi|433086323|ref|ZP_20272720.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE137]
gi|433114600|ref|ZP_20300416.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE153]
gi|433124259|ref|ZP_20309848.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE160]
gi|433138278|ref|ZP_20323565.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE167]
gi|433148106|ref|ZP_20333172.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE174]
gi|433211578|ref|ZP_20395193.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE99]
gi|442606929|ref|ZP_21021724.1| Deoxyribodipyrimidine photolyase [Escherichia coli Nissle 1917]
gi|26107076|gb|AAN79260.1|AE016757_164 Deoxyribodipyrimidine photolyase [Escherichia coli CFT073]
gi|227838409|gb|EEJ48875.1| deoxyribodipyrimidine photolyase [Escherichia coli 83972]
gi|300301951|gb|EFJ58336.1| FAD binding domain of DNA photolyase [Escherichia coli MS 185-1]
gi|300407283|gb|EFJ90821.1| FAD binding domain of DNA photolyase [Escherichia coli MS 45-1]
gi|307552561|gb|ADN45336.1| deoxyribodipyrimidine photolyase PhrB [Escherichia coli ABU 83972]
gi|315292023|gb|EFU51375.1| FAD binding domain of DNA photolyase [Escherichia coli MS 153-1]
gi|355419149|gb|AER83346.1| deoxyribodipyrimidine photolyase [Escherichia coli str. 'clone D
i2']
gi|355424069|gb|AER88265.1| deoxyribodipyrimidine photolyase [Escherichia coli str. 'clone D
i14']
gi|430966872|gb|ELC84235.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE188]
gi|430984902|gb|ELD01519.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE201]
gi|431028034|gb|ELD41079.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE214]
gi|431042359|gb|ELD52851.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE220]
gi|431054922|gb|ELD64491.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE230]
gi|431103321|gb|ELE07991.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE53]
gi|431133211|gb|ELE35209.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE60]
gi|431140433|gb|ELE42204.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE67]
gi|431193548|gb|ELE92884.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE87]
gi|431332268|gb|ELG19511.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE63]
gi|431482478|gb|ELH62181.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE209]
gi|431509446|gb|ELH87697.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE218]
gi|431514432|gb|ELH92274.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE223]
gi|431573996|gb|ELI46785.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE124]
gi|431609359|gb|ELI78684.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE137]
gi|431637100|gb|ELJ05219.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE153]
gi|431649572|gb|ELJ16919.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE160]
gi|431665247|gb|ELJ31974.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE167]
gi|431676999|gb|ELJ43082.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE174]
gi|431736233|gb|ELJ99575.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE99]
gi|441712236|emb|CCQ07701.1| Deoxyribodipyrimidine photolyase [Escherichia coli Nissle 1917]
Length = 472
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 157/499 (31%), Positives = 240/499 (48%), Gaps = 59/499 (11%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLS---- 61
+VWFR+DLR DN ALAA R + V+A++I P R W H++S
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSARVLALYIATP------------RQWAAHNVSPRQA 52
Query: 62 -HLDSSLRSLGTSLVTK------RSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLV 110
+++ L +L +L K R D ++ +E+VK A T LF+N+ Y+
Sbjct: 53 ELINTQLNALQIALAEKGIPLLFREVDDFAASVEIVKQVCAEYRVTHLFYNYQYEVNERA 112
Query: 111 RDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDP 165
RD +A+ L + + F+ ++ P V + + F F W K L MP
Sbjct: 113 RDVQAERTL--RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP--- 167
Query: 166 DAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPL 225
+ PK +SG + PS TL + +S ++ + A L F
Sbjct: 168 -ECVAAPKVRSSGSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCLNGA 220
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
EY + R TS LS L G +S R+ H + +Q EG +++L
Sbjct: 221 GEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQ-VLEGGPG-----SVWLN 274
Query: 286 SIGLREYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMREL 344
+ RE+ R++ +P RP + W + + KAW++G+TGYP+VDA MR+L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQL 334
Query: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 404
+TGW+H+R+R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 405 AFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
+ RI NP +G KFD GE++R+WLPEL +P + +H PW E G+ L +YP
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKAVHEPWKWAEKT----GVTL--DYP 448
Query: 465 FPIVRIDAAKCRLDEALSE 483
PIV A+ R A E
Sbjct: 449 QPIVDHKEARLRTLAAYEE 467
>gi|378768089|ref|YP_005196559.1| deoxyribodipyrimidine photo-lyase [Pantoea ananatis LMG 5342]
gi|365187572|emb|CCF10522.1| deoxyribodipyrimidine photo-lyase [Pantoea ananatis LMG 5342]
Length = 475
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 151/491 (30%), Positives = 232/491 (47%), Gaps = 49/491 (9%)
Query: 8 IVWFRRDLRVEDNPALAAGVRA--GAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VW R DLR+ DN AL A VIA+FI P + + ++ SL L S
Sbjct: 5 LVWLRNDLRINDNLALHAACTQPDARVIALFIATPGQWQQHEMAARQVAFIHQSLDMLQS 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
SL G L + D S+ L+ + +LF+N+ Y+ RD A++ L
Sbjct: 65 SLAERGIPLHFHQCDDFAASIDFLVGFCQKQQVDKLFYNYQYEVNERERDASAEKRLHEA 124
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWE-----------KCLSMPFDPD-APLL 170
+ + F+ LL P + G+ + F F + +C+ P + APL
Sbjct: 125 NVVCQGFDDSLLLPPGSIQTGDGEMYKVFTPFSKAFLRQLQQGLPECVPAPKAREGAPLK 184
Query: 171 PPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSK 230
PK + D + DT +F PG A K L F +++Y+K
Sbjct: 185 EPKSLPPFDYPKADIDTSLF----------------PPGEQAAVKRLREFAKQAVLDYAK 228
Query: 231 NRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDES-VNLFLKSIGL 289
R +TS LS +L G +S R+ H + +E KA + S +++ +
Sbjct: 229 QRDLPALDSTSRLSVYLSTGVLSPRQCLHRI-------LHEQPKALESSPAAVWINELIW 281
Query: 290 REYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATG 348
RE+ R++ HP +P + + +W + +F AW+ G+TGYP+VDA MR++ G
Sbjct: 282 REFYRHLIVAHPRLCKHQPFVHWTRNVAWQRNSVHFDAWKAGKTGYPIVDAAMRQMQTIG 341
Query: 349 WLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDR 408
W+H+R+R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + R
Sbjct: 342 WMHNRLRMITASFLVKDLLIDWREGERYFMQQLIDGDLAANNGGWQWAASTGTDAAPYFR 401
Query: 409 IDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
I NP +G +FD GE++RR+LPEL +P IH P Q +L +YP PIV
Sbjct: 402 IFNPTTQGERFDKEGEFIRRYLPELKEVPDSDIHQ----PHQWAQKNNKKL--DYPAPIV 455
Query: 469 -RIDAAKCRLD 478
DA K LD
Sbjct: 456 EHKDARKKTLD 466
>gi|108808420|ref|YP_652336.1| deoxyribodipyrimidine photolyase [Yersinia pestis Antiqua]
gi|167398528|ref|ZP_02304052.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|108780333|gb|ABG14391.1| Deoxyribodipyrimidine photo-lyase type I [Yersinia pestis Antiqua]
gi|167051032|gb|EDR62440.1| deoxyribodipyrimidine photolyase [Yersinia pestis biovar Antiqua
str. UG05-0454]
Length = 485
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 149/479 (31%), Positives = 229/479 (47%), Gaps = 32/479 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR DLRV DN AL A + +VIAVFI P + + +L+ +L HL +
Sbjct: 5 LVWFRNDLRVTDNLALHAACQDPQASVIAVFIATPVQWAAHGMAPRQAAFLRQNLQHLQA 64
Query: 66 SLRSLGTSLVTKRSTDSVSS---LLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L + G L + D +S L++ + LF++ Y+ +RD L+ +
Sbjct: 65 ALAARGIPLHYHQCDDFQASNTWLVDFCQQQQVDSLFYSQQYELNERLRDDALAVQLSER 124
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLP-PKRINSGDMS 181
I +SF+ +L P V + + F F + D +P PK ++ +
Sbjct: 125 AITCQSFHDSVLLAPGTVLTGNNEMYKVFTPFRRAFIQRLLMSDNHCVPAPKARHAPPVL 184
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
P L F+ + + L G A + L F + +Y + R TS
Sbjct: 185 LSP---LPFDYPQQSVDSQLF----PAGEDAALQRLRRFCREQVQDYRQYRDLPAVPGTS 237
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWAN--EGNKAGDESVNLFLKSIGLREYSRYMSFN 299
LSP+L G +S R+ F+ + WA E + D +L + RE+ R++
Sbjct: 238 CLSPYLVLGVLSPRQCFNRL------WAESPEMLENADSGAFTWLNELIWREFYRHLLVA 291
Query: 300 HP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVV 358
+P P +G W E KAW+QG+TGYP+VDA MR++ TGW+H+R+R++
Sbjct: 292 YPRLCQHHPFIGWTDGLVWNRSESQLKAWQQGQTGYPIVDAAMRQMNETGWMHNRLRMIS 351
Query: 359 SSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYK 418
+SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +G +
Sbjct: 352 ASFLVKDLLIDWRQGERYFMSQLVDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGER 411
Query: 419 FDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
FD +G ++RRWLPELA +P IH PW E +YP P+V D + RL
Sbjct: 412 FDKDGVFIRRWLPELAAVPDSDIHQPWRWAE--------RQHLDYPVPLV--DHKQARL 460
>gi|227354710|ref|ZP_03839129.1| deoxyribodipyrimidine photolyase [Proteus mirabilis ATCC 29906]
gi|227165220|gb|EEI50045.1| deoxyribodipyrimidine photolyase [Proteus mirabilis ATCC 29906]
Length = 476
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 151/485 (31%), Positives = 228/485 (47%), Gaps = 29/485 (5%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPAL--AAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKH 58
M +VWFR DLRV DN AL A V A+F P + ++ + ++
Sbjct: 1 MHSAPVHLVWFRHDLRVTDNKALFYACQNTQAQVHAIFTVTPAQWKAHHMALSQQAFIHD 60
Query: 59 SLSHLDSSLRSLG---TSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRA 115
+L +L +L L T +++ D+ S+++ + T LFFNH Y RD +
Sbjct: 61 ALLNLSHALAKLNIPLTLIISDTYADAAQSIVDYCQQHQVTALFFNHQYALNEQNRDKKV 120
Query: 116 KEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI 175
E L A V ++ ++ P +V QG+ + F F L + D LP I
Sbjct: 121 ME-LLAHNTTVYCYHDNVFVPPGNVVTQQGEMYKVFTPFRTAFLRLFLSQDNASLPAPEI 179
Query: 176 NSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKA 235
+ + P +F + + A + L F +I Y+K R
Sbjct: 180 RAHQKTVSPLSAPLFALPISS------TKMFPASEQAALQRLKQFCYERVIHYAKWRDIP 233
Query: 236 DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
TS LSP+L G VSVR+ F+ R+ Q + + S ++ + RE+ ++
Sbjct: 234 AIDGTSQLSPYLAIGLVSVRQCFN--RLYQTE--PDFLENNHSSAFVWFNELVWREFYQH 289
Query: 296 MSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRI 354
+ +P S + + W D+ F AW QG TG+P++DA MR+L TGW+H+R+
Sbjct: 290 LIVANPSLSKQIAFQPWTENIRWRNDQTEFTAWTQGLTGFPIIDAAMRQLNQTGWMHNRL 349
Query: 355 RVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQF 414
R++ +SF VK L + WRWG YF L+D D S+ GWQ+ + T D + RI NP
Sbjct: 350 RMLTASFLVKDLLIDWRWGENYFMSQLIDGDFASNNGGWQWAASTGTDAVPYFRIFNPTT 409
Query: 415 EGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGS--NYPFPIVRIDA 472
+G KFDP+GE++R WLPELA +P IH P I+ G +YP PIV D
Sbjct: 410 QGRKFDPDGEFIRHWLPELADVPDRDIHTP--------SEWAIKTGHYLDYPQPIV--DH 459
Query: 473 AKCRL 477
AK R+
Sbjct: 460 AKARV 464
>gi|218688505|ref|YP_002396717.1| deoxyribodipyrimidine photolyase [Escherichia coli ED1a]
gi|218426069|emb|CAR06886.1| deoxyribodipyrimidine photolyase, FAD-binding [Escherichia coli
ED1a]
Length = 472
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 152/487 (31%), Positives = 234/487 (48%), Gaps = 35/487 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR DN ALAA R + V+A++I P + + + L+ L +
Sbjct: 5 LVWFRQDLRQHDNLALAAACRNSSARVLALYIATPRQWAAHNVSPRQAELINTQLNALQN 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L G L+ D SV ++ +V T LF+N+ Y+ RD +A+ L +
Sbjct: 65 ALAEKGIPLLFHEVDDFAASVETVKQVCAENRITHLFYNYQYEVNERARDVQAERTL--R 122
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRINS 177
+ F+ ++ P V + + F F W K L MP + PK +S
Sbjct: 123 NVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRSS 178
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
G + PS TL + +S ++ + A L F EY + R
Sbjct: 179 GSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPAV 232
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
TS LS L G +S R+ H + +Q EG +++L + RE+ R++
Sbjct: 233 EGTSRLSASLATGGLSPRQCLHRLLAEQPQ-VLEGGPG-----SVWLNELIWREFYRHLM 286
Query: 298 FNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
+P RP + W + + KAW++G+TGYP+VDA MR+L +TGW+H+R+R+
Sbjct: 287 TYYPSLCKHRPFIAWTDRVQWQSNPAHLKAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRM 346
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +G
Sbjct: 347 ITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQG 406
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFD GE++R+WLPEL +P + +H PW E G+ L +YP PIV A+ R
Sbjct: 407 EKFDREGEFIRQWLPELRDVPGKAVHEPWKWAEKT----GVTL--DYPQPIVDHKEARLR 460
Query: 477 LDEALSE 483
A E
Sbjct: 461 TLAAYEE 467
>gi|291281640|ref|YP_003498458.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
CB9615]
gi|387505751|ref|YP_006158007.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
RM12579]
gi|416814990|ref|ZP_11891700.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
3256-97]
gi|416825006|ref|ZP_11896295.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str. USDA
5905]
gi|419118062|ref|ZP_13663061.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC5A]
gi|419119196|ref|ZP_13664175.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC5B]
gi|419124923|ref|ZP_13669823.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC5C]
gi|419135172|ref|ZP_13679979.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC5E]
gi|425247236|ref|ZP_18640449.1| deoxyribodipyrimidine photolyase [Escherichia coli 5905]
gi|209776604|gb|ACI86614.1| deoxyribodipyrimidine photolyase [Escherichia coli]
gi|290761513|gb|ADD55474.1| Deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
CB9615]
gi|320654283|gb|EFX22336.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320659916|gb|EFX27458.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str. USDA
5905]
gi|374357745|gb|AEZ39452.1| deoxyribodipyrimidine photolyase [Escherichia coli O55:H7 str.
RM12579]
gi|377953948|gb|EHV17509.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC5A]
gi|377971814|gb|EHV35167.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC5B]
gi|377979980|gb|EHV43250.1| deoxyribodipyrimidine photolyase [Escherichia coli DEC5C]
gi|377987482|gb|EHV50668.1| deoxyribodipyrimidine photo-lyase [Escherichia coli DEC5E]
gi|408173922|gb|EKI00920.1| deoxyribodipyrimidine photolyase [Escherichia coli 5905]
Length = 472
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 153/492 (31%), Positives = 240/492 (48%), Gaps = 59/492 (11%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLS---- 61
+VWFR+DLR+ DN ALAA R + V+A++I P R W H++S
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATP------------RQWAAHNMSPRQA 52
Query: 62 -HLDSSLRSLGTSLVTK------RSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLV 110
+++ L L +L K R D ++ +E+VK A T LF+N+ Y+
Sbjct: 53 ELINAQLNGLQIALAEKGIPLLFREVDDFAASVEIVKQVCAENSVTHLFYNYQYEVNERA 112
Query: 111 RDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDP 165
RD + + L + + F+ ++ P V + + F F W K L MP
Sbjct: 113 RDVQVERTL--RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP--- 167
Query: 166 DAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPL 225
+ PK +SG + PS TL + +S ++ + A L F
Sbjct: 168 -ECVAAPKVRSSGSIKPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGA 220
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
EY + R TS LS L G +S R+ H + +Q + G AG +++L
Sbjct: 221 GEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLN 274
Query: 286 SIGLREYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMREL 344
+ RE+ R++ +P P + W + + +AW++G+TGYP+VDA MR+L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL 334
Query: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 404
+TGW+H+R+R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 405 AFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
+ RI NP +G KFD GE++R+WLPEL +P + +H PW E AG++L +YP
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRQWLPELRNVPGKSVHEPWKWAEK----AGVKL--DYP 448
Query: 465 FPIVRIDAAKCR 476
PIV A+ +
Sbjct: 449 QPIVEHKEARVQ 460
>gi|417252936|ref|ZP_12044695.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 4.0967]
gi|386216867|gb|EII33356.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 4.0967]
Length = 472
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 158/493 (32%), Positives = 240/493 (48%), Gaps = 47/493 (9%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHPYSHERPLLGHLKFFSWV------VDEGYFKAWRQGRTGYPLVDAGMRELWATGWL 350
+P L H F W + + +AW++G+TGYP+VDA MR+L +TGW+
Sbjct: 286 MTYYP-----SLCKHCPFIVWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWM 340
Query: 351 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRID 410
H+R+R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI
Sbjct: 341 HNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIF 400
Query: 411 NPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRI 470
NP +G KFD GE++RRWLPEL +P + +H PW Q AG+ L +YP PIV
Sbjct: 401 NPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVML--DYPQPIVDH 454
Query: 471 DAAKCRLDEALSE 483
A+ R A E
Sbjct: 455 KEARLRTLAAYEE 467
>gi|417595633|ref|ZP_12246296.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3030-1]
gi|345359953|gb|EGW92126.1| deoxyribodipyrimidine photo-lyase [Escherichia coli 3030-1]
Length = 472
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 156/488 (31%), Positives = 239/488 (48%), Gaps = 37/488 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPSPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P P + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MISASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVML--DYPQPIVDHKEARL 459
Query: 476 RLDEALSE 483
R A E
Sbjct: 460 RTLAAYEE 467
>gi|420345922|ref|ZP_14847350.1| deoxyribodipyrimidine photo-lyase [Shigella boydii 965-58]
gi|391275301|gb|EIQ34091.1| deoxyribodipyrimidine photo-lyase [Shigella boydii 965-58]
Length = 472
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 153/481 (31%), Positives = 238/481 (49%), Gaps = 37/481 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+ WFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVDVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIKPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCENGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSVSLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P RP + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW Q AG++L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVKL--DYPQPIVEHKEARV 459
Query: 476 R 476
+
Sbjct: 460 Q 460
>gi|395005572|ref|ZP_10389447.1| deoxyribodipyrimidine photolyase [Acidovorax sp. CF316]
gi|394316499|gb|EJE53223.1| deoxyribodipyrimidine photolyase [Acidovorax sp. CF316]
Length = 487
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 160/496 (32%), Positives = 238/496 (47%), Gaps = 51/496 (10%)
Query: 8 IVWFRRDLRVEDNPAL-AAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFRRDLR D+ AL A V F++ E P +++ SL+ LD
Sbjct: 9 LVWFRRDLRASDHAALYHALTECRKVHCAFVFDTEILDPLPKKDRRVEFIRASLAELDER 68
Query: 67 LRSL------GTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
LR+L G ++ ++D++ +L G +F NH +P +L RD R + L
Sbjct: 69 LRTLSGHATGGLIVLHAVASDAIPAL---AVELGVDAVFTNHDDEPQALARDSRVRTRLA 125
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFA-----------AFWEKCLSMPFDPDAPL 169
A G A ++ ++E +V G+P++ F AF+ K P + A
Sbjct: 126 AAGRAFHTYKDHTVFERGEVLTQTGKPYSVFTPYKNAWLRKVDAFYLK--GYPVERHAHR 183
Query: 170 LPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYS 229
L P+ G + P L FE AL P + +AL + Y
Sbjct: 184 LAPRPKAHGH-AVPPLAALGFE----PAGMAL------PAGESGAQALFEDFQQRIGRYE 232
Query: 230 KNRRKADSATTSFLSPHLHFGEVSVR---KVFHLVRIKQVSWANEGNKAGDESVNLFLKS 286
R S+LS HL FG +S R + H + IK G++ +L
Sbjct: 233 DARNFPAVKGPSYLSVHLRFGTISPRLLARTAHGLAIK-----------GNQGAATWLSE 281
Query: 287 IGLREYSRYMSFNHPYSHE---RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRE 343
+ R++ + +HP+ E +P + + S + F AW +GRTGYPLVDA M +
Sbjct: 282 LVWRDFYHQILAHHPHVVEHSFKPAYDAIAWESGPEAQELFAAWCEGRTGYPLVDAAMAQ 341
Query: 344 LWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDG 403
+ TG++H+R+R+VV+SF VK L + WRWG YF L D DL ++ GWQ+ S + D
Sbjct: 342 INQTGYMHNRLRMVVASFLVKDLGIDWRWGEAYFATHLNDFDLAANNGGWQWASSSGCDA 401
Query: 404 RAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNY 463
+ + RI NP + KFD G+++R++LP+LA LP +H PW A LQAAG+ LGS Y
Sbjct: 402 QPYFRIFNPVSQSEKFDARGQFIRKYLPQLATLPDAALHAPWKAKPLELQAAGVVLGSTY 461
Query: 464 PFPIVRIDAAKCRLDE 479
P PIV D A+ R E
Sbjct: 462 PHPIVDHDEARQRTLE 477
>gi|85702996|ref|ZP_01034100.1| deoxyribodipyrimidine photolyase [Roseovarius sp. 217]
gi|85671924|gb|EAQ26781.1| deoxyribodipyrimidine photolyase [Roseovarius sp. 217]
Length = 473
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 141/432 (32%), Positives = 214/432 (49%), Gaps = 24/432 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFRRDLR+ D+PAL A + G +I VFI ++ G +W L SL+ L
Sbjct: 8 LVWFRRDLRLADHPALCAAIEGGGPIIPVFI---HDDSVAGLGAAPKWRLGLSLASLARD 64
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L G+ L+ +R + ++ L +V TGA + ++ LYDP ++ RD K AL G A
Sbjct: 65 LEDRGSRLILRRGS-ALEVLRALVAETGAGAVHWSRLYDPQAIERDKAVKSALREDGAAA 123
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSD 186
+S +++EPW V G + ++ W + PL P I + DM SD
Sbjct: 124 QSHAGHVMFEPWTVETKTGGFYRVYSPMWRAVKDR--EVAVPLRAPSTILAPDMWPV-SD 180
Query: 187 TLVFEDESEKGSNALLARAWSP----GWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
L +D + A P G + A L F +G + +Y R TS
Sbjct: 181 GL--DDWHMGAAMVRGAEVCLPYQRVGEAAAMDRLHAFTDGAISDYKDARNFPAVEATSS 238
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
LS +L +GEVS R+ +H AG + +LK + RE++ ++ ++ P+
Sbjct: 239 LSENLTYGEVSPRQCWHA--------GQRALHAGAQGAEHWLKELVWREFAYHLMYHTPH 290
Query: 303 SHERPLLGHLKFFSWVVDEGY--FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
F W D + AW+QGRTG P VDA MRE++ TG +H+R R++V+S
Sbjct: 291 ILTDNWRTDWDAFPWSTDADHPDVIAWKQGRTGEPFVDAAMREMYVTGKMHNRARMIVAS 350
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
+ K L W+ G+ +F D L D D S+A+GWQ+ +G PD + R+ NP+ + KFD
Sbjct: 351 YLTKHLMTHWKVGLDWFADCLTDWDPASNAMGWQWAAGCGPDAAPYFRVFNPETQLEKFD 410
Query: 421 PNGEYVRRWLPE 432
+G Y RRW+ E
Sbjct: 411 RDGAYTRRWIAE 422
>gi|182439675|ref|YP_001827394.1| deoxyribodipyrimidine photo-lyase [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|178468191|dbj|BAG22711.1| deoxyribodipyrimidine photo-lyase [Streptomyces griseus subsp.
griseus NBRC 13350]
Length = 455
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 156/484 (32%), Positives = 240/484 (49%), Gaps = 44/484 (9%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVR-AGAVIAVFIW--APEEEGPYYPGRVSRWWLKHSLSH 62
++V F DLR+ DNP L A +R A V+ +F+ A G P R++ +L L+
Sbjct: 3 VAVVLFTSDLRLHDNPVLRAALRDADEVVPLFVRDDAVHRAGFDAPNRLA--FLADCLAA 60
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
LD+ LR G L+ +R ++ + + V + TGA ++ + R+ R +EAL
Sbjct: 61 LDAGLRHRGGRLIVRRG-EAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREALADT 119
Query: 123 GIAVRSFNADLL-YEPWDVNDAQGQP-FATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
G + +A + P V G+ FA F ++ + + L P+ + D
Sbjct: 120 GRELHVHDAVVTALAPGRVVPTGGKDHFAVFTPYFRRWEAEGVR--GTLTAPRTVRVPDG 177
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
SD L D E S L AR G K +T+++NGP+ +Y T
Sbjct: 178 --VASDPLPDRDSVENLSPGL-ARG---GEEAGRKLVTSWLNGPMADYEDGHDDLAGDAT 231
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSPHLHFG VS ++ H R K G G+ F++ + R++ + +
Sbjct: 232 SRLSPHLHFGTVSAAELVHRAREK-------GGLGGEA----FVRQLAWRDFHHQVLADR 280
Query: 301 P---YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
P +S RP + W D AW+ G TGYPLVDA MR+L GW+H+R R++
Sbjct: 281 PDASWSDYRP-----RHDRWRSDADEIDAWKSGLTGYPLVDAAMRQLAHEGWMHNRARML 335
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
+SF K L + WR G ++F D L+D D+ ++ L WQ+++GT D R +R+ NP +G
Sbjct: 336 AASFLTKTLYVDWRVGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPVIQGK 394
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGS-NYPFPIVRIDAAKCR 476
+FD G+YVRRW+PELA + IH PW LQ G++ + +YP P+V + A+ R
Sbjct: 395 RFDARGDYVRRWVPELAEVEGSAIHEPWK-----LQ--GLDRAALDYPDPVVDLAEARAR 447
Query: 477 LDEA 480
+ A
Sbjct: 448 FERA 451
>gi|422834749|ref|ZP_16882809.1| deoxyribodipyrimidine photo-lyase [Escherichia coli E101]
gi|432453458|ref|ZP_19695696.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE193]
gi|433032198|ref|ZP_20219973.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE112]
gi|371613933|gb|EHO02421.1| deoxyribodipyrimidine photo-lyase [Escherichia coli E101]
gi|430974091|gb|ELC91029.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE193]
gi|431558805|gb|ELI32389.1| deoxyribodipyrimidine photo-lyase [Escherichia coli KTE112]
Length = 472
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 153/492 (31%), Positives = 240/492 (48%), Gaps = 59/492 (11%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLS---- 61
+VWFR+DLR+ DN ALAA R + V+A++I P R W H++S
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATP------------RQWAAHNMSPRQA 52
Query: 62 -HLDSSLRSLGTSLVTK------RSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLV 110
+++ L L +L K R D ++ +E++K A T LF+N+ Y+
Sbjct: 53 ELINAQLNGLQIALAEKGIPLLFREVDDFAASVEIIKQVCAENSVTHLFYNYQYEVNERA 112
Query: 111 RDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDP 165
RD + AL + + F+ ++ P V + + F F W K L MP
Sbjct: 113 RDVEVERAL--RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP--- 167
Query: 166 DAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPL 225
+ PK +SG + PS TL + +S ++ + A L F
Sbjct: 168 -ECVAAPKVRSSGSIKPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGA 220
Query: 226 IEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
EY + R TS LS L G +S R+ H + +Q + G AG +++L
Sbjct: 221 GEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLS 274
Query: 286 SIGLREYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMREL 344
+ RE+ R++ +P P + W + + +AW++G+TGYP+VDA MR+L
Sbjct: 275 ELIWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL 334
Query: 345 WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 404
+TGW+H+R+R++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D
Sbjct: 335 NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAA 394
Query: 405 AFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
+ RI NP +G KFD GE++R+WLPEL +P + +H PW E AG++L +YP
Sbjct: 395 PYFRIFNPTTQGEKFDREGEFIRQWLPELRDVPGKVVHEPWKWAEK----AGVKL--DYP 448
Query: 465 FPIVRIDAAKCR 476
PIV A+ +
Sbjct: 449 QPIVEHKEARVQ 460
>gi|291570180|dbj|BAI92452.1| deoxyribopyrimidine photolyase [Arthrospira platensis NIES-39]
Length = 474
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 149/475 (31%), Positives = 230/475 (48%), Gaps = 38/475 (8%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPE--EEGPYYPGRVSRWWLKHSLSHLD 64
+ W RRDLR+ DN LAA R + V+ VF PE P RV+ ++ L L
Sbjct: 6 LFWHRRDLRISDNWGLAAARRVTSQVVGVFCLDPEILSGDDIAPVRVA--YMLGCLQCLQ 63
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ G+ L+ + + L ++ A GA +++N +PL RD +E+LT GI
Sbjct: 64 EDYQRGGSQLLIIQD-NPAQGLRKLAVALGAIAVYWNQDVEPLPRQRDRSVEESLTEVGI 122
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V +F +L+ P + +P+ + +W K + P P+ P +R+ S ++
Sbjct: 123 KVETFWDQVLHSPEAIFTGSKEPYKVYTPYWRKWIQQP-KPE----PCQRLKSTGLTEAQ 177
Query: 185 SDTLVFEDESEKGSNAL-----LARAWS------PGWSNADKALTTFINGPLIEYSKNRR 233
+ E G+ AL L WS PG + A L F + + EY + R
Sbjct: 178 EKAAL-----EAGAIALPTAKDLGFIWSEPFILEPGETAASDRLEIFCDRAIYEYDEGRN 232
Query: 234 KADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYS 293
TS LSP L FG + +R ++ + +++ ++A + + + + RE+
Sbjct: 233 FPAIDGTSVLSPALRFGAIGIRTLWQ--KTQEIIALTRSDEA-RHHIQTWQQELAWREFY 289
Query: 294 RYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDR 353
+ ++ P F W ++ +F+AW QGRTGYP+VDA MR+L TGW+H+R
Sbjct: 290 QQALYHFPALAIGAFRQPFDRFPWSDNQEHFQAWCQGRTGYPIVDAAMRQLNQTGWMHNR 349
Query: 354 IRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQ 413
R++V+SF K L + W+WG KYF TL+D DL S+ GWQ+ S + D + RI NP
Sbjct: 350 CRMIVASFLTKDLIINWQWGEKYFMQTLIDGDLASNNGGWQWSSSSGMDPKPL-RIFNPA 408
Query: 414 FEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
+ K+DP EY+R+WLPEL L T H S +G YP PIV
Sbjct: 409 SQTQKYDPEAEYIRQWLPELRNLDTA---HLVTGKIS----SGDRQACGYPQPIV 456
>gi|376283622|ref|YP_005156832.1| putative riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Corynebacterium diphtheriae 31A]
gi|371577137|gb|AEX40805.1| putative riboflavin biosynthesis protein [Corynebacterium
diphtheriae 31A]
Length = 446
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 154/446 (34%), Positives = 216/446 (48%), Gaps = 36/446 (8%)
Query: 8 IVWFRRDLRVEDNPALAAG---VRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
+VWFR DLRV DNPAL VRA ++ E G G +WWL HSL L
Sbjct: 6 VVWFRDDLRVHDNPALMKAWELVRANPADLHAVYIANEVGVRPLGGAVKWWLHHSLLALS 65
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
L G L S D ++ L ++V + GAT + N YDP + D +A G+
Sbjct: 66 EQLAQRGVRLHVL-SGDPLTLLPQLVTSCGATAVTMNRRYDPAARSIDDAFVADASAHGV 124
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAF----WEKCLSMPFDPDAPLLPPKRINSGDM 180
V F LL EP ++ G + F F + +P D A PPK D
Sbjct: 125 EVYDFPCHLLAEPGEITTTTGGSYKVFTPFSRNLRDAIGDLPLDTLAA--PPKSAQPIDD 182
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
+ + + + A +++AW+PG A +AL ++ L Y ++R + D T
Sbjct: 183 RE--TQAAIADLGWDAWWAASISKAWTPGEPAAREALAE-LDDILPRYLEDRDRPDIDGT 239
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSP L FGE+SV +V W + G F + + R+++ + H
Sbjct: 240 SRLSPRLRFGELSVAEV----------WNHAHTSEG------FRRQLMWRDFAWHRLDAH 283
Query: 301 PYSHERPLLGHLKFFSWVVDEGYFKA----WRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
P + F W D G F+A WR GRTG LVDAGMRELWA G +H+R+R+
Sbjct: 284 PDMATANIRPEFDRFPW--DGGDFEAELNAWRHGRTGIALVDAGMRELWAIGTMHNRVRM 341
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
V +S VK L + WR G ++FWDTL+DAD S+ WQ+++G+ D + RI NP +
Sbjct: 342 VAASLLVKNLGIHWRHGEQWFWDTLVDADPASNPFNWQWVAGSGDDAAPYFRIFNPDTQA 401
Query: 417 YKFDPNGEYVRRWLPEL-ARLPTEWI 441
+FDP+G Y RWLP + A P E I
Sbjct: 402 RRFDPDGTYRNRWLPIMSADYPVEAI 427
>gi|110804662|ref|YP_688182.1| deoxyribodipyrimidine photolyase [Shigella flexneri 5 str. 8401]
gi|417700631|ref|ZP_12349771.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-218]
gi|417737461|ref|ZP_12386067.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 4343-70]
gi|417826662|ref|ZP_12473238.1| deoxyribodipyrimidine photolyase [Shigella flexneri J1713]
gi|420318976|ref|ZP_14820832.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 2850-71]
gi|420370575|ref|ZP_14871118.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 1235-66]
gi|424837129|ref|ZP_18261766.1| deoxyribodipyrimidine photolyase [Shigella flexneri 5a str. M90T]
gi|110614210|gb|ABF02877.1| deoxyribodipyrimidine photolyase [Shigella flexneri 5 str. 8401]
gi|332760931|gb|EGJ91219.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 4343-70]
gi|333008008|gb|EGK27484.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri K-218]
gi|335576862|gb|EGM63100.1| deoxyribodipyrimidine photolyase [Shigella flexneri J1713]
gi|383466181|gb|EID61202.1| deoxyribodipyrimidine photolyase [Shigella flexneri 5a str. M90T]
gi|391254269|gb|EIQ13431.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 2850-71]
gi|391320117|gb|EIQ77022.1| deoxyribodipyrimidine photo-lyase [Shigella flexneri 1235-66]
Length = 472
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 152/481 (31%), Positives = 238/481 (49%), Gaps = 37/481 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+ WFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVDVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIKPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCENGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+P RP + W + + +AW++G+TGYP++DA MR+L +TGW+H+R+R
Sbjct: 286 MTYYPSLCKHRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++RRWLPEL +P + +H PW Q AG++L +YP PIV A+
Sbjct: 406 GEKFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVKL--DYPQPIVEHKEARV 459
Query: 476 R 476
+
Sbjct: 460 Q 460
>gi|254991721|ref|ZP_05273911.1| DNA photolyase [Listeria monocytogenes FSL J2-064]
Length = 467
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 135/464 (29%), Positives = 229/464 (49%), Gaps = 23/464 (4%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
S++WFRRDLRV DN AL + ++ +F P + G S S++H
Sbjct: 2 TSVMWFRRDLRVNDNKALYHACKEDDLLLLFQVNP---AQFITGSPSHQAFFASVAHFKQ 58
Query: 66 SL-RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ ++ ++ + L + + + +++FN RD A+ Q I
Sbjct: 59 EIDKTAHLQIMFGEPIECFQQLKDTLPSWD--KVYFNRDETGYGAERDEAAQAFFDEQKI 116
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
V++F+ L+ +V + + + F +++K + + P K + R
Sbjct: 117 EVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKK-----WREEIKETPFKVTLKHENIRKE 171
Query: 185 SDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244
S L +E++ + ++ L G A+ L FI + +Y K R + TS LS
Sbjct: 172 SLFLKYEEQFAEMTSDL--PILDIGERAANTRLANFIKHDVADYDKARDFPELDKTSHLS 229
Query: 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSH 304
+L GE+S+R ++ + Q + A EG F K + R++ + + P
Sbjct: 230 RYLRTGEISIRTIWQSL---QETEATEGRAT-------FEKELCWRDFYNMIYVSFPNQK 279
Query: 305 ERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK 364
P+ + +F W + +FKAW++G+TG+PLVDA MR+L TGW+H+R+R++ +SF K
Sbjct: 280 NEPIQENYRFIEWENNREFFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITASFLTK 339
Query: 365 VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGE 424
L + WR+G KYF L+D D S+ GWQ+ + T D + RI NP + KFD G+
Sbjct: 340 DLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDSVPYFRIFNPTTQSQKFDSTGK 399
Query: 425 YVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
++R+++ ELA LP ++IH P E+ + G+ LG +YPFPIV
Sbjct: 400 FIRKYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIV 443
>gi|407693949|ref|YP_006818737.1| Deoxyribodipyrimidine photolyase family [Alcanivorax dieselolei B5]
gi|407251287|gb|AFT68394.1| Deoxyribodipyrimidine photolyase family [Alcanivorax dieselolei B5]
Length = 486
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 148/509 (29%), Positives = 231/509 (45%), Gaps = 33/509 (6%)
Query: 8 IVWFRRDLRVEDN-PALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFR DLR + P A AG V+A+++ P + + + RW++ SL L
Sbjct: 5 LVWFRNDLRCHGHTPLRQALAGAGPVLALYVLCPGQWDAHDVAPLRRWYVLESLRELGEE 64
Query: 67 LRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L + G L D +V + V G T++F N Y L RD +L G
Sbjct: 65 LAARGVDLHVIDGGDFAGAVEVVQRFVADRGVTEVFCNREYPVNELNRDRAVARSLENTG 124
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
+ +R F+ +L P +N +G P+ F A+ ++ + P LP G
Sbjct: 125 VRIRGFDDGVLVPPRALNTGKGTPYTVFTAY-KRRWDAWMEEKGPPLPETPRWPGGQGDF 183
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
V + +E + L W PG + A + L F+ L Y R A TS L
Sbjct: 184 VGRATVRKALAELSVSPRLTELWQPGEAAAARQLERFVARDLAHYKNRRDIPCEAGTSGL 243
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAG-DESVNLFLKSIGLREYSRYMSFNHPY 302
S L G ++ + + + R+ AG E ++ + R++ R + P
Sbjct: 244 SAALSAGTLAPAQAWWVARLAM-------RDAGVREGAACWIGELAWRDFYRQILHRFPM 296
Query: 303 -SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
+ P + W +E F AW QGRTGYPLVDA MR+L +TGW+H+R+R++ + F
Sbjct: 297 LAKGAPFRPETRLLQWNDNETLFNAWCQGRTGYPLVDAAMRQLLSTGWMHNRLRMLTAMF 356
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L + WR G ++F L+D D+ ++ GWQ+ + T D + R+ +P + +FDP
Sbjct: 357 LTKHLFIDWRKGERFFMQHLIDGDVAANNGGWQWSASTGTDAAPYFRVFSPVRQSRRFDP 416
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
G ++ R++PELA L + +H PW P L +YP P+V + K R+
Sbjct: 417 QGHFIARYVPELAELDNDSVHEPWKQP---------LLSGDYPPPVVAHEGVKQRV---- 463
Query: 482 SEMWQQEAASRAAIENGTEEGLGDSSDSA 510
EAA RAA + +G G S A
Sbjct: 464 ------EAAFRAARDTWRRQGEGAGSSGA 486
>gi|423197809|ref|ZP_17184392.1| hypothetical protein HMPREF1171_02424 [Aeromonas hydrophila SSU]
gi|404630927|gb|EKB27571.1| hypothetical protein HMPREF1171_02424 [Aeromonas hydrophila SSU]
Length = 473
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 159/487 (32%), Positives = 229/487 (47%), Gaps = 26/487 (5%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR DLR+ DNPAL G V A+FI +P + + V + +L + L
Sbjct: 2 KLVWFRNDLRLADNPALRHGCANDEPVAALFIISPTQWRQHKLAPVRQRFLLAQVDALGR 61
Query: 66 SLRSLGTSLVTKRS---TDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L +LG L R + ++L + + G TQL+ N + L RD AL Q
Sbjct: 62 ELAALGIPLHLLRVETFAEVPAALAGLCRELGVTQLYANQAIEIDELRRDLAVTTALAEQ 121
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCLSMPFDPDAPLLPPKRINSGD 179
GI FN + P V G+ F F F W K L D D ++ R +
Sbjct: 122 GIGCHWFNGCCVLPPGRVLTGSGEMFKVFTPFSRAWLKAL----DEDGFVI--HRAPAPR 175
Query: 180 MSRCPSDTLVFEDESEKGSNALLARA-WSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
P L D + L A W G + A + L F+ +++Y + R A
Sbjct: 176 GEPLPWQPLAERDFVDAVLGELAADPRWPVGEAEASRRLNDFLEQAVLDYGETRDFPAIA 235
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LSP+L G +S R+ + ++Q +KA V +L + RE+ R++
Sbjct: 236 GTSVLSPYLAAGIISPRQC--VAALQQRLGYRPQSKAQPGFV--WLNELIWREFYRHLLV 291
Query: 299 NHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
P S RP W D F AW +GRTGYP+VDA MR L ATGW+H+R+R++
Sbjct: 292 LIPTLSMNRPFKPETSALPWSWDPDAFAAWCEGRTGYPIVDAAMRCLNATGWMHNRLRMI 351
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V+SF K L + WR G YF L+D DL ++ GWQ+ +GT D + R+ NP +G
Sbjct: 352 VASFLTKDLHIHWRLGEDYFMSRLIDGDLAANNGGWQWAAGTGADAAPYFRVFNPTTQGQ 411
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
+FDP GE++R W+ ELA LP ++H P L+ G +YP P+V A+ R
Sbjct: 412 RFDPQGEFIRIWVSELADLPAAYLHQ----PHDWLRLKG---RRDYPAPMVDHAVARVRA 464
Query: 478 DEALSEM 484
E +
Sbjct: 465 IEMFRAL 471
>gi|416285588|ref|ZP_11647810.1| Deoxyribodipyrimidine photolyase [Shigella boydii ATCC 9905]
gi|320179459|gb|EFW54416.1| Deoxyribodipyrimidine photolyase [Shigella boydii ATCC 9905]
Length = 472
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 153/479 (31%), Positives = 238/479 (49%), Gaps = 33/479 (6%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+ WFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWETHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVDVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDV---NDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSG 178
+ + F+ ++ P V N + F F W K L P+ +P R +SG
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMHKVFTPFKNAWLKRLREGM-PECVAVPKVR-SSG 179
Query: 179 DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238
+ PS TL + +S ++ + A L F EY + R
Sbjct: 180 SIKPAPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCENGAGEYEQQRDFPAVE 233
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 234 GTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLSELIWREFYRHLMT 287
Query: 299 NHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
+P RP + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R++
Sbjct: 288 YYPSLCKHRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIVDAAMRQLNSTGWMHNRLRMI 347
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
+SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +G
Sbjct: 348 TASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPITQGE 407
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
KFD GE++RRWLPEL +P + +H PW Q AG++L +YP PIV A+ +
Sbjct: 408 KFDREGEFIRRWLPELRDVPGKAVHEPWKWA----QKAGVKL--DYPQPIVEHKEARVQ 460
>gi|374702505|ref|ZP_09709375.1| deoxyribodipyrimidine photolyase [Pseudomonas sp. S9]
Length = 481
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 144/483 (29%), Positives = 235/483 (48%), Gaps = 21/483 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPY--YPGRVSRWWLKHSLSHLDS 65
++WFR DLRV DN ALAA + G +AVF+ +P + + P ++ +WL+ +LSHL +
Sbjct: 4 LMWFRTDLRVHDNTALAAAMAQGPTVAVFLLSPAQWQAHDDAPCKID-FWLR-NLSHLST 61
Query: 66 SLRSLGTSLVTKRST--DSVSSLL-EVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
L L L+ + + D + ++ E+ + Q+ N Y +RD + +AL A
Sbjct: 62 ELGKLNVPLLVRTAEHWDQAAGVISELCQQFDIGQVHLNQEYGVNESLRDDQVGQALDAL 121
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
I +R L ++P V G F ++ F + C D L+ + +
Sbjct: 122 DIGLRRHLDQLFFQPGSVLTKTGTYFQVYSQFRKVCYQRLHDNIPGLI--AKPAAQAALA 179
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF 242
+D + + E + L + W G A + L F++ P+ +Y R S TS
Sbjct: 180 IEADPVPLQVEPFATPSKQLQQLWPAGEDEAMRRLARFVDEPIADYQAERDIPSSPGTSQ 239
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP- 301
LS +L G +S R+ H + GN +N L RE+ +++ +P
Sbjct: 240 LSAYLAAGVISPRQCLHAALAFNRGEFDSGNARATTWINELL----WREFYKHILVGYPR 295
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
S R W AW+QGRTG P++DA +R+L +TGW+H+R+R+VV+ F
Sbjct: 296 VSKHRAFRVETDLLKWRKAPAELDAWQQGRTGIPIIDAAIRQLLSTGWMHNRLRMVVAMF 355
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
K L + WR G ++F L+D DL ++ GWQ+ + T D + RI NP + +FDP
Sbjct: 356 LTKNLLIDWREGERFFMRHLIDGDLAANNGGWQWSASTGTDAAPYFRIFNPVSQSQRFDP 415
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
+G ++R+WLPEL L + IH P S L G+ ++YP PIV + +++ R A
Sbjct: 416 DGRFIRQWLPELDGLGKKEIHDP-----SAL--GGLFGMADYPSPIVDLKSSRERAINAF 468
Query: 482 SEM 484
++
Sbjct: 469 RDL 471
>gi|218437085|ref|YP_002375414.1| deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
gi|218169813|gb|ACK68546.1| Deoxyribodipyrimidine photo-lyase [Cyanothece sp. PCC 7424]
Length = 475
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 144/471 (30%), Positives = 229/471 (48%), Gaps = 29/471 (6%)
Query: 8 IVWFRRDLRVEDNPALA-AGVRAGAVIAVFIWAPE--EEGPYYPGRVSRWWLKHSLSHLD 64
+ W RRDLR+ DN L+ A R+ V+ +F P+ E+ P RV+ +L L L
Sbjct: 6 LFWHRRDLRISDNIGLSTARQRSPHVVGIFCLDPDILEKDDVAPARVT--YLIGCLQELQ 63
Query: 65 SSLRSLGTSLVTKRS--TDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+ + G+ L+ + + ++ L E +KA +F+N +P + RD + AL +
Sbjct: 64 QNYQQAGSQLLILKGKPSQAIPILAESLKAQA---VFWNLDVEPYAQTRDEQVSNALQEK 120
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEK-CLSMPFDPDAPLLPPKRINSGDMS 181
GIA F LL+ P + +P+ + FW + P L + +N +S
Sbjct: 121 GIATEKFWDQLLHAPGKILTLSKEPYKVYTPFWRNWSQELKKSPVQALEDVQGLNQQQIS 180
Query: 182 RCPSDTLV----FEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
++ +D N L+ +PG + A + L F + Y + R
Sbjct: 181 LAKEAGIIDLPTAKDLGYLWENPLML---NPGETAAKERLQEFCKTSINNYQEQRDLPAI 237
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
TS LS L FG + +R V+ + N + ES+ + + + RE+ ++
Sbjct: 238 DGTSRLSAALKFGAIGIRTVWQATL---ELYENSRSDEVRESIQTWQQELAWREFYQHCM 294
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
+ P + P + F W DE F+AW +G+TGYP+VDA MR+L TGW+H+R R++
Sbjct: 295 YFFPELADGPYRKEFREFPWDNDEDLFQAWCEGKTGYPIVDAAMRQLNETGWMHNRCRMI 354
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V+SF K L + W+WG KYF L D DL ++ GWQ+ + + D + RI NP +
Sbjct: 355 VASFLTKDLIINWQWGEKYFMQKLYDGDLSANNGGWQWSASSGMDPKPL-RIFNPASQSQ 413
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIV 468
K+DP+GEY+R+W+PEL L TE++ P S L+ G YP PIV
Sbjct: 414 KYDPDGEYIRQWIPELKSLDTEYLVTG-KIPTSELRQCG------YPEPIV 457
>gi|427420013|ref|ZP_18910196.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 7375]
gi|425762726|gb|EKV03579.1| deoxyribodipyrimidine photolyase [Leptolyngbya sp. PCC 7375]
Length = 482
Score = 209 bits (531), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 138/435 (31%), Positives = 213/435 (48%), Gaps = 12/435 (2%)
Query: 8 IVWFRRDLRVEDNPALAAG-VRAGAVIAVFIWAPE--EEGPYYPGRVSRWWLKHSLSHLD 64
+ W RRDLR+ DN LAA R+ V+ F P E P RV+ ++ ++ L
Sbjct: 6 LFWHRRDLRISDNLGLAAARERSPKVVGFFCLDPGILEADDVAPARVA--YMLGCVAQLQ 63
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+++G+ L+ + + V + + GA +++N +P S RD+ ALT +GI
Sbjct: 64 ERYQAVGSELLILKG-NPVEQIPQTASTLGAMAVYWNRDVEPYSRQRDNAVAAALTEKGI 122
Query: 125 AVRSFNAD-LLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
+R+ D LL+ P DV G+P+ + FW ++ P A L + D R
Sbjct: 123 EMRTKTWDQLLHAPGDVLTGAGKPYTVYGPFWRNWQNLVKLPPAATLQGA-VGLSDAERG 181
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
D + G PG A L F + + Y + R TS L
Sbjct: 182 LVDEIALPSAKALGFTWAAPLPLEPGERAARAQLEFFGHKAIEAYDEQRNFPAVTGTSLL 241
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
S L FG V +R+V+ + ++ + G +V ++K + RE+ +++ F P
Sbjct: 242 SAALKFGAVGMREVW---QTAMTAYDACNSDEGRTNVQTWMKELAWREFYQHVMFFFPEL 298
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
P K F W DE F AW +GRTGYP+VDA MR+L TGW+H+R R++V+SF
Sbjct: 299 AHGPYRDAWKDFPWDNDEEKFAAWCEGRTGYPIVDAAMRQLNETGWMHNRCRMIVASFLT 358
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L + WRWG KYF L+D DL ++ GWQ+ + + D + RI NP + KFD +
Sbjct: 359 KDLIIDWRWGEKYFMQKLVDGDLSANNGGWQWSASSGMDPKPL-RIFNPASQAKKFDADA 417
Query: 424 EYVRRWLPELARLPT 438
+Y+R+WLPE+ + T
Sbjct: 418 DYIRQWLPEIRHVDT 432
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.132 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,426,165,725
Number of Sequences: 23463169
Number of extensions: 503037073
Number of successful extensions: 1248694
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4143
Number of HSP's successfully gapped in prelim test: 214
Number of HSP's that attempted gapping in prelim test: 1233551
Number of HSP's gapped (non-prelim): 5850
length of query: 681
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 531
effective length of database: 8,839,720,017
effective search space: 4693891329027
effective search space used: 4693891329027
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 81 (35.8 bits)