BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005723
(681 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q43125|CRY1_ARATH Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=2
Length = 681
Score = 1035 bits (2675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/681 (79%), Positives = 591/681 (86%), Gaps = 21/681 (3%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSL 67
IVWFRRDLRVEDNPALAA VRAG VIA+F+WAPEEEG Y+PGRVSRWWLK+SL+ LDSSL
Sbjct: 15 IVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSL 74
Query: 68 RSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVR 127
RSLGT L+TKRSTDSV+SLL+VVK+TGA+Q+FFNHLYDPLSLVRDHRAK+ LTAQGIAVR
Sbjct: 75 RSLGTCLITKRSTDSVASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVR 134
Query: 128 SFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCPSDT 187
SFNADLLYEPW+V D G+PF+ FAAFWE+CLSMP+DP++PLLPPK+I SGD+S+C +D
Sbjct: 135 SFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPYDPESPLLPPKKIISGDVSKCVADP 194
Query: 188 LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHL 247
LVFED+SEKGSNALLARAWSPGWSN DKALTTFINGPL+EYSKNRRKADSATTSFLSPHL
Sbjct: 195 LVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFLSPHL 254
Query: 248 HFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERP 307
HFGEVSVRKVFHLVRIKQV+WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHERP
Sbjct: 255 HFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERP 314
Query: 308 LLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 367
LLGHLKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ
Sbjct: 315 LLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQ 374
Query: 368 LPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVR 427
LPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRIDNPQFEGYKFDPNGEYVR
Sbjct: 375 LPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRIDNPQFEGYKFDPNGEYVR 434
Query: 428 RWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQ 487
RWLPEL+RLPT+WIHHPWNAPESVLQAAGIELGSNYP PIV +D AK RL EALS+MWQ
Sbjct: 435 RWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQL 494
Query: 488 EAASRAAIENGTEEGLGDSS--DSAPIAFPPDIQMEEIPEPARNNLPTTARRYEDQMVPS 545
EAASRAAIENG+EEGLGDS+ + API FP DI MEE EP R N RRYEDQMVPS
Sbjct: 495 EAASRAAIENGSEEGLGDSAEVEEAPIEFPRDITMEET-EPTRLN---PNRRYEDQMVPS 550
Query: 546 MTTSLVRVEE-EESSLELRNSAEESRAEVPRN-ANVNQEPRRDTLNQGVLQTVHNNNAFQ 603
+T+SL+R EE EESSL LRNS +SRAEVPRN N NQ +R T
Sbjct: 551 ITSSLIRPEEDEESSLNLRNSVGDSRAEVPRNMVNTNQAQQRRAEPASNQVTA----MIP 606
Query: 604 QFNAAIVLANAEDSTAESSSTSRRERDGGVVPVWSPATSSYSEQLVGDENGIG---TSSS 660
+FN IV + EDSTAESSS+ RRER GG+VP WSP YSEQ +ENGIG T+SS
Sbjct: 607 EFNIRIVAESTEDSTAESSSSGRRERSGGIVPEWSPG---YSEQFPSEENGIGGGSTTSS 663
Query: 661 YLQRHPQSHQIMNCRRLSQTG 681
YLQ H H+I+N RRLSQTG
Sbjct: 664 YLQNH---HEILNWRRLSQTG 681
>sp|Q96524|CRY2_ARATH Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2
Length = 612
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/534 (57%), Positives = 391/534 (73%), Gaps = 12/534 (2%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+IVWFRRDLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SL+HL S
Sbjct: 7 TIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSLAHLSQS 66
Query: 67 LRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAV 126
L++LG+ L ++ +++S++L+ ++ TGAT++ FNHLYDP+SLVRDH KE L +GI+V
Sbjct: 67 LKALGSDLTLIKTHNTISAILDCIRVTGATKVVFNHLYDPVSLVRDHTVKEKLVERGISV 126
Query: 127 RSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI-----NSGDMS 181
+S+N DLLYEPW++ +G+PF +F ++W+KCL M + L PP R+ + +
Sbjct: 127 QSYNGDLLYEPWEIYCEKGKPFTSFNSYWKKCLDMSIE-SVMLPPPWRLMPITAAAEAIW 185
Query: 182 RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K +TS
Sbjct: 186 ACSIEELGLENEAEKPSNALLTRAWSPGWSNADKLLNEFIEKQLIDYAKNSKKVVGNSTS 245
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+LHFGE+SVR VF R+KQ+ WA + N G+ES +LFL+ IGLREYSRY+ FN P
Sbjct: 246 LLSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNFP 305
Query: 302 YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSF 361
++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF
Sbjct: 306 FTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSF 365
Query: 362 FVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDP 421
VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG+IPDG DR+DNP +G K+DP
Sbjct: 366 AVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYDP 425
Query: 422 NGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEAL 481
GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+ L +A+
Sbjct: 426 EGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVDIDTARELLAKAI 485
Query: 482 SEMWQQEAASRAA---IENGTEEGLGDSSDSAPIAFPPDIQM--EEIPEPARNN 530
S + + AA I + E LG ++ P P + +++P R N
Sbjct: 486 SRTREAQIMIGAAPDEIVADSFEALGANTIKEP-GLCPSVSSNDQQVPSAVRYN 538
>sp|P40115|CRY1_SINAL Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1
Length = 501
Score = 608 bits (1567), Expect = e-173, Method: Compositional matrix adjust.
Identities = 286/486 (58%), Positives = 357/486 (73%), Gaps = 5/486 (1%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSL 60
MS +IVWFRRDLR+EDNPALAA G+V VFIW PEEEG +YPGR SRWW+K SL
Sbjct: 1 MSTNKKTIVWFRRDLRIEDNPALAAAAHEGSVFPVFIWCPEEEGQFYPGRASRWWMKQSL 60
Query: 61 SHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
+HL SL++LG+ L ++ +VS++L+ V+ATGAT++ FNHLYDP+SLVRDH KE L
Sbjct: 61 AHLRQSLKALGSELTLIKTHSTVSAILDCVRATGATKVVFNHLYDPVSLVRDHTVKEKLV 120
Query: 121 AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
+GI+V+S+N DL P + +KCL M + L PP R+
Sbjct: 121 ERGISVQSYNGDLCMSPGRYTVKRANLLLVLILTGKKCLDMSVE-SVVLPPPWRLMPLSA 179
Query: 181 SR----CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
+ C + L E+E+EK SNALL RAWSPGWSNADK L FI LI+Y+KN +K
Sbjct: 180 AETVWACSVEELGLENEAEKPSNALLTRAWSPGWSNADKILNEFIEKQLIDYAKNSKKVV 239
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
+TS LSP+LHFGE+SVR+VF R+KQ+ WA + N G+ES +LFL+ IGLR+YSR +
Sbjct: 240 GNSTSLLSPYLHFGEISVRRVFQCARMKQIIWARDKNGEGEESADLFLRGIGLRDYSRII 299
Query: 297 SFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRV 356
FN P++HE+ LL HL+FF W D FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV
Sbjct: 300 CFNFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRV 359
Query: 357 VVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEG 416
+VSSF VK L LPW+WGMKYFWDTLLDADLE D +GWQYISG++PDG DR+DNP +G
Sbjct: 360 IVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLDNPAIQG 419
Query: 417 YKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
K+DP GEY+R+WLPELARLPTEWIHHPW+AP +VL+A+G+ELG+NY PIV ID A+
Sbjct: 420 AKYDPEGEYIRQWLPELARLPTEWIHHPWDAPLTVLKASGVELGTNYAKPIVVIDTAREL 479
Query: 477 LDEALS 482
L +A+S
Sbjct: 480 LTKAIS 485
>sp|Q9KNA8|PHR_VIBCH Deoxyribodipyrimidine photo-lyase OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=phrA PE=1
SV=1
Length = 469
Score = 215 bits (547), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 143/448 (31%), Positives = 227/448 (50%), Gaps = 18/448 (4%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSS 66
+VWFRRDLR DN AL A + +G V A++I PE+ ++ + + L+ L
Sbjct: 3 LVWFRRDLRSFDNTALTAALNSGDPVAAMYIATPEQWHQHHLAPIQADLIWRRLAELQQE 62
Query: 67 LRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123
L +L L ++ D + ++ ++ K ATQ+ N Y+ RD A++ L+ QG
Sbjct: 63 LAALNVPLFYQQVADFQAAAVAVSQLAKTLNATQVLANRDYELDEQQRDQLAQQLLSEQG 122
Query: 124 IAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
I +F+ + P V QG+ F F F L++ F P P++ R + +
Sbjct: 123 IIWSAFDDKCVLPPGSVRTKQGEFFKVFTPFKRAWLTL-FQP--PVIGKNRPVA--LWNV 177
Query: 184 PSDT--LVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTS 241
PS LV+ E + + W+ + L F + +Y + R TS
Sbjct: 178 PSALAELVWHPEQAFDYPRIDSTPWAADFETVRAQLRDFCRERVQDYHQARDFPAREGTS 237
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LSP+L G +S R+ + R+ S E + E ++L + RE+ +++ P
Sbjct: 238 SLSPYLAIGVLSARQC--VARLYHESSMGELS----EGAQVWLSELIWREFYQHLVAIEP 291
Query: 302 -YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
S R + W D F+ W +G+TGYP+VDA MR+L TGW+H+R+R++V+S
Sbjct: 292 NLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVAS 351
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F K L + WRWG +YF L+D D ++ GWQ+ + T DG+ + RI NP +G KFD
Sbjct: 352 FLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRIFNPVSQGEKFD 411
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAP 448
PNG+++RRW+PEL + + +IH PW P
Sbjct: 412 PNGDFIRRWVPELRSVSSAYIHQPWTYP 439
>sp|P00914|PHR_ECOLI Deoxyribodipyrimidine photo-lyase OS=Escherichia coli (strain K12)
GN=phrB PE=1 SV=1
Length = 472
Score = 214 bits (544), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 154/481 (32%), Positives = 238/481 (49%), Gaps = 37/481 (7%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFR+DLR+ DN ALAA R + V+A++I P + + + L+ L
Sbjct: 5 LVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQI 64
Query: 66 SLRSLGTSLVTKRSTDSVSSLLEVVKATGA----TQLFFNHLYDPLSLVRDHRAKEALTA 121
+L G L+ + D V+S+ E+VK A T LF+N+ Y+ RD + AL
Sbjct: 65 ALAEKGIPLLFREVDDFVASV-EIVKQVCAENSVTHLFYNYQYEVNERARDVEVERAL-- 121
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAF---WEKCL--SMPFDPDAPLLPPKRIN 176
+ + F+ ++ P V + + F F W K L MP + PK +
Sbjct: 122 RNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLKRLREGMP----ECVAAPKVRS 177
Query: 177 SGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKAD 236
SG + PS TL + +S ++ + A L F EY + R
Sbjct: 178 SGSIEPSPSITLNYPRQSFDTAHFPVEE------KAAIAQLRQFCQNGAGEYEQQRDFPA 231
Query: 237 SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYM 296
TS LS L G +S R+ H + +Q + G AG +++L + RE+ R++
Sbjct: 232 VEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLNELIWREFYRHL 285
Query: 297 SFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
HP RP + W + + +AW++G+TGYP+VDA MR+L +TGW+H+R+R
Sbjct: 286 ITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLR 345
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
++ +SF VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +
Sbjct: 346 MITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQ 405
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKC 475
G KFD GE++R+WLPEL +P + +H PW Q AG+ L +YP PIV A+
Sbjct: 406 GEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWA----QKAGVTL--DYPQPIVEHKEARV 459
Query: 476 R 476
+
Sbjct: 460 Q 460
>sp|Q55081|PHR_SYNY3 Deoxyribodipyrimidine photo-lyase OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=phrA PE=1 SV=1
Length = 488
Score = 202 bits (514), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 144/475 (30%), Positives = 232/475 (48%), Gaps = 37/475 (7%)
Query: 8 IVWFRRDLRVEDNPALA-AGVRAGAVIAVF-----IWAPEEEGPYYPGRVSRWWLKHSLS 61
++W RRDLR+ D+ ALA A + ++ VF I E+ P RV+ +L L
Sbjct: 20 LLWHRRDLRLNDHLALAKARQKTAKIVGVFCLDNKILQAEDMAP---ARVA--YLLGCLQ 74
Query: 62 HLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTA 121
L + LG+ L+ ++ D V L ++ GA + + +P + RD +AL
Sbjct: 75 SLQDHYQRLGSELLVFQA-DPVQLLPKLANTLGAHGVTWTLDTEPYAQKRDLAVAQALRE 133
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRIN----S 177
+G+A+ + L++ P +V G P+ + FW+ +P +P+ PK + +
Sbjct: 134 RGLAIATEWDQLMHHPGEVLTQAGSPYTVYTPFWKNWSQLP--KTSPVPTPKDLQGLTPA 191
Query: 178 GDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADS 237
P + L ++ G +PG A++ L F+ L EY +NR
Sbjct: 192 EKEKLAPLEPLAIPQLADLGFIWDQPLPLTPGEEAAEQRLDWFVAHGLEEYQQNRNFPAL 251
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
TS LS L FG +S R ++ + +W ++ S+ + + + RE+ ++
Sbjct: 252 DGTSQLSAALKFGVISPRTLW---QTTLEAWEQSRSEEARASIETWQQELAWREFYQHCL 308
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
++ P + P + F W ++ +F+AW +GRTGYP++DA M +L TGW+H+R R++
Sbjct: 309 YSFPALAQGPYRSPFQEFPWEENQDHFQAWCEGRTGYPIIDAAMAQLNQTGWMHNRCRMI 368
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V+SF +K L L W+WG YF TL D DL ++ GWQ+ + + D + RI NP +
Sbjct: 369 VASFLIKDLILNWQWGELYFMQTLYDGDLAANNGGWQWSASSGMDPKPL-RIFNPHTQAQ 427
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGS----NYPFPIV 468
KFDP GEY+R WLP+LAR T L + GS NYP PIV
Sbjct: 428 KFDPEGEYIRTWLPQLARFDT-----------GDLLTGKLTPGSRRSVNYPEPIV 471
>sp|P25078|PHR_SALTY Deoxyribodipyrimidine photo-lyase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=phrB PE=1 SV=2
Length = 473
Score = 202 bits (513), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 146/474 (30%), Positives = 229/474 (48%), Gaps = 26/474 (5%)
Query: 8 IVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDS 65
+VWFRRDLR++DN ALAA R + V+A++I P + + ++ L+ L +
Sbjct: 5 LVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQAHDMAPRQAAFISAQLNALQT 64
Query: 66 SLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+L G L+ D S+ ++ V + + LF+N+ Y+ RD ++ L +
Sbjct: 65 ALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFYNYQYEFNERQRDAAVEKTLPS- 123
Query: 123 GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR 182
+ F+ ++ P V + + F F L + P +P +I
Sbjct: 124 -VICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLKRLKEDIPPCVPAPKIRVSGALS 182
Query: 183 CPSDTLVFEDESEKGSNALLARAWSPGWSNADKA-LTTFINGPLIEYSKNRRKADSATTS 241
P + + AL P NA A L F EY+ R TS
Sbjct: 183 TPLTPVSLNYPQQAFDAALF-----PVEENAVIAQLRQFCAQGADEYALRRDFPAVDGTS 237
Query: 242 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP 301
LS L G +S R+ H + +Q + G SV +L + RE+ R++ +P
Sbjct: 238 RLSASLATGGLSPRQCLHRLLAEQ----PQALDGGPGSV--WLNELIWREFYRHLMTWYP 291
Query: 302 -YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
+P + K +W + YF+AW++G TGYP+VDA MR+L ATGW+H+R+R++ +S
Sbjct: 292 ALCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITAS 351
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F VK L + WR G +YF L+D DL ++ GWQ+ + T D + RI NP +G +FD
Sbjct: 352 FLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIFNPTTQGERFD 411
Query: 421 PNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAK 474
+GE++R+WLP L +P + IH PW E AG+ L +YP PIV A+
Sbjct: 412 RDGEFIRQWLPALRDIPGKAIHEPWRWAEK----AGVVL--DYPRPIVEHKQAR 459
>sp|P12768|PHR_STRGR Deoxyribodipyrimidine photo-lyase OS=Streptomyces griseus GN=phr
PE=3 SV=1
Length = 455
Score = 202 bits (513), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 153/483 (31%), Positives = 234/483 (48%), Gaps = 42/483 (8%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVR-AGAVIAVFIW--APEEEGPYYPGRVSRWWLKHSLSH 62
++V F DLR+ DNP L A +R A V+ +F+ A G P ++ +L L+
Sbjct: 3 VAVVLFTSDLRLHDNPVLRAALRDADEVVPLFVRDDAVHRAGFDAPNPLA--FLADCLAA 60
Query: 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
LD+ LR G L+ +R ++ + + V + TGA ++ + R+ R +EAL
Sbjct: 61 LDAGLRHRGGRLIVRRG-EAATEVRRVAEETGAARVHIAAGVSRYAARREQRIREALADS 119
Query: 123 GIAVRSFNADLL-YEPWDVNDAQGQP-FATFAAFWEKCLSMPFDPDAPLLPPKRINSGDM 180
G + +A + P V G+ FA F ++ + + R+ G
Sbjct: 120 GRELHVHDAVVTALAPGRVVPTGGKDHFAVFTPYFRRWEAEGVRGTQTAPRTVRVPDG-- 177
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
SD L D E S L AR G K +T+++NGP+ +Y T
Sbjct: 178 --VASDPLPDRDCVENLSPGL-ARG---GEEAGRKLVTSWLNGPMADYEDGHDDLAGDAT 231
Query: 241 SFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNH 300
S LSPHLHFG VS ++ H R K G G+ F++ + R++ + +
Sbjct: 232 SRLSPHLHFGTVSAAELVHRAREK-------GGLGGEA----FVRQLAWRDFHHQVLADR 280
Query: 301 P---YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
P +S RP + W D AW+ G TGYPLVDA MR+L GW+H+R R++
Sbjct: 281 PDASWSDYRP-----RHDRWRSDADEMHAWKSGLTGYPLVDAAMRQLAHEGWMHNRARML 335
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
+SF K L + WR G ++F D L+D D+ ++ L WQ+++GT D R +R+ NP +G
Sbjct: 336 AASFLTKTLYVDWREGARHFLDLLVDGDVANNQLNWQWVAGTGTDTRP-NRVLNPVIQGK 394
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
+FD G+YVR W+PELA + IH PW L AG+ +YP P+V + A+ R
Sbjct: 395 RFDARGDYVRGWVPELAEVEGSAIHEPWKL--QGLDRAGL----DYPDPVVDLAEARARF 448
Query: 478 DEA 480
+ A
Sbjct: 449 ERA 451
>sp|Q04449|PHR_BACPE Deoxyribodipyrimidine photo-lyase OS=Bacillus pseudofirmus (strain
OF4) GN=phr PE=3 SV=2
Length = 479
Score = 194 bits (492), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 142/485 (29%), Positives = 222/485 (45%), Gaps = 34/485 (7%)
Query: 9 VWFRRDLRVEDNPALAAGVRA-----GAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHL 63
VWFRRD R+ D+ AL + A G +A F P+ V + ++
Sbjct: 10 VWFRRDFRLHDHTALKHAIEAIEKHGGKWLAFFYLDPKTASV---EPVHHDYFFQTVMQF 66
Query: 64 DSSLRSLGTSL--VTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTA 121
L++ G L +T ++S LL+ A + + D +RD A+ L
Sbjct: 67 KQMLKTNGGDLYIITGTIEGALSKLLQAFPEIDAVYANDDRVGD--GRLRDEAAEHFLAK 124
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMS 181
Q I +F L EP V G P+ F +++ P + + + G +
Sbjct: 125 QSIPFYTFEDAYLTEPDQVLKKDGTPYKVFTPYYKAWAKER--KRTPAVIKRDVLLGSVH 182
Query: 182 RCPSDTLVFEDESEKGSNALLARA---WSP-GWSNADKALTTFINGPLIEYSKNRRKADS 237
+ + + E+E N L+ + WS G +A K L F L Y NR
Sbjct: 183 KGTAP----DREAETLFNNLIKKCSYDWSAIGEEHAIKRLQMFTKKRLSGYKANRDFPSI 238
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
TS LSP++ G VS R +++ + +A S FLK + R++ R +
Sbjct: 239 TGTSRLSPYIKTGAVSSRSIYYHIL---------NAEADSYSAETFLKELAWRDFYRMVH 289
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
F P +R ++ + +W D+ +W++G TG+P+VDAGMR+L GW+H+R+R++
Sbjct: 290 FYEPDCKDREIMEGYRELNWSHDQDDLTSWKRGETGFPIVDAGMRQLLNEGWMHNRLRMI 349
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
+SF K L + WR G +YF L+D D S+ GWQ+ + D + RI NP +
Sbjct: 350 TASFLTKDLLIDWRLGERYFERMLIDYDPSSNIGGWQWAASVGTDAVPYFRIFNPVTQSK 409
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRL 477
+FD NG Y+R ++PEL +P +IH PW E L +YP PIV D +K R
Sbjct: 410 RFDENGTYIRTYIPELNHVPDHYIHEPWKMSEEEQVKYKCRLDEDYPLPIV--DHSKQR- 466
Query: 478 DEALS 482
+ALS
Sbjct: 467 KKALS 471
>sp|Q9HQ46|PHR_HALSA Deoxyribodipyrimidine photo-lyase OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=phr PE=3
SV=2
Length = 481
Score = 191 bits (485), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 146/477 (30%), Positives = 225/477 (47%), Gaps = 30/477 (6%)
Query: 6 CSIVWFRRDLRVEDNPALAA---GVRA-------GAVIAVFIWAPEEEGPYYPGRVSRWW 55
+ W RRDLR DN LAA GV A G V AVF + E P RV+ +
Sbjct: 1 MQLFWHRRDLRTTDNRGLAAAAPGVTAVDGGHDQGPVAAVFCFDDEVLAHAAPPRVA--F 58
Query: 56 LKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRA 115
+ +L+ L R LG+ L+ R D + L V AT++ +NH Y L+ RD
Sbjct: 59 MLDALAALRERYRDLGSDLIV-RHGDPAAVLPAVANDLDATRVVWNHDYSGLATDRDAGV 117
Query: 116 KEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRI 175
++AL A G+A F+ + + P ++ G P++ + FW K +P AP P +
Sbjct: 118 RDALDAAGVAHAQFHDAVHHRPGEIRTNAGDPYSVYTYFWRKWQDREKNPPAPEPEPADL 177
Query: 176 NSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFI-NGPLIEYSKNRRK 234
+ S ++ A + A G + A L F +G + Y R
Sbjct: 178 AADTALADTSPLPSVQELGFAEPEAAVPDA---GTAAARSLLDAFRESGDIYRYEDRRDY 234
Query: 235 ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLRE-YS 293
TS LSPHL FG + +R V+ R + + + E+V F+ + RE Y+
Sbjct: 235 PHEEPTSRLSPHLKFGTIGIRTVYEAARAAKSDADTDDER---ENVAAFIGQLAWREFYA 291
Query: 294 RYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDR 353
+ + FN E + W D +AW+ G TGYP+VDAGMR+L A ++H+R
Sbjct: 292 QVLYFNQNVVSEN-FKAYEHPIEWRDDPAALQAWKDGETGYPIVDAGMRQLRAEAYMHNR 350
Query: 354 IRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQ 413
+R++V++F K L + WR G +F + L D D +D GWQ+ + T D + + R+ NP
Sbjct: 351 VRMIVAAFLTKDLLVDWRAGYDWFREKLADHDTANDNGGWQWAASTGTDAQPYFRVFNPM 410
Query: 414 FEGYKFDPNGEYVRRWLPELARLPTEWIH--HPWNAPESVLQAAGIELGSNYPFPIV 468
+G ++DP+ +Y+ ++PEL +P + IH H + E A YP PIV
Sbjct: 411 TQGERYDPDADYITEFVPELRDVPADAIHSWHELSLSERRRHA------PEYPDPIV 461
>sp|Q89AJ9|PHR_BUCBP Deoxyribodipyrimidine photo-lyase OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=phrB PE=3 SV=1
Length = 478
Score = 189 bits (481), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 133/484 (27%), Positives = 227/484 (46%), Gaps = 41/484 (8%)
Query: 7 SIVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
+++WFR DLR+ DN AL R A V+A+FI P++ + + + ++ L
Sbjct: 4 NLMWFRNDLRLSDNSALHFSCRNNASTVLALFIATPKQWERHCLAPKKKMLIYKNIVALK 63
Query: 65 SSLRSLGTSLVTKRSTDSVSS---LLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTA 121
+ LG STD + S ++E K T +FFN Y+ RD K+ L
Sbjct: 64 KKITELGIIFYYYESTDYLESTNYIIEFCKIHKVTSIFFNLEYEFYERQRDKIIKKKLKK 123
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLS-MPFDPDAPLLPPKRINSGDM 180
I + F+ +L P + ++ G+ + F+ F KC+ + + + P+ N D
Sbjct: 124 NNIIINCFHDSVLITPGSIKNSYGKMYKKFSYFKYKCIKQLQLNIPSCFPKPQNKNLHDH 183
Query: 181 SRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT 240
+F EK A + G + L FI +Y+ ++ + +T
Sbjct: 184 YSLDFTIPIFHTYLEKFD----ANIFPIGEDIVYEKLKFFIKYAFNKYNFDQEIFELNST 239
Query: 241 SFLSPHLHFGEVSVRKVFHLV---------RIKQVSWANEGNKAGDESVNLFLKSIGLRE 291
S LS HL G +S R+ L+ ++++ W NE + RE
Sbjct: 240 SMLSAHLSIGVISPRQCVTLLFKEYPDIIHKLEECKWINE---------------LLWRE 284
Query: 292 YSRYMSFNHPYSHERPLLGHLKF-FSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWL 350
+ +++ + +P + L H + W + Y W+QG TGYP++DAGMR+L GW+
Sbjct: 285 FYQHLLYFYPNIGQNQSLYHWENRIKWDNNLYYLNLWKQGNTGYPIIDAGMRQLKQLGWI 344
Query: 351 HDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRID 410
+R+R++ +SF VK L + WR G +YF L+D D S+ WQ+I+ D + RI
Sbjct: 345 SNRLRMITASFLVKNLLIDWRKGEEYFMSQLIDGDFASNNGNWQWIASVGTDSMPYFRIF 404
Query: 411 NPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRI 470
NP + KFD N +++R+++PEL+ + T IH+P + ++ ++ S YP PI+
Sbjct: 405 NPMLQSKKFDINAKFIRKYIPELSNVSTYNIHNPCDNNKTN------KIHSKYPQPIINY 458
Query: 471 DAAK 474
+K
Sbjct: 459 YHSK 462
>sp|P57386|PHR_BUCAI Deoxyribodipyrimidine photo-lyase OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=phrB PE=3 SV=1
Length = 483
Score = 183 bits (465), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 134/478 (28%), Positives = 219/478 (45%), Gaps = 42/478 (8%)
Query: 7 SIVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
+++WFR DLRV DN AL + VI++FI P++ + ++ + L L
Sbjct: 4 NLIWFRNDLRVYDNTALHQACQNDTDKVISLFISTPKQWHNQSVSKKKISFMYYHLISLQ 63
Query: 65 SSLRSLGTSLVTKRSTD---SVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTA 121
L L L STD S+ L+ K LF+N+ Y RD+ K+ L+
Sbjct: 64 KELLKLNIILYYHESTDFLNSIEYLIFFCKKHKVNNLFYNYEYAINERYRDYLVKKKLSQ 123
Query: 122 QGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFD--PDAPLLPPKRINSGD 179
+G V+ F+ +LL+ + + + + + F F +K + + P +P KR + D
Sbjct: 124 KGFLVKGFHDNLLFSNRQIRNQKNETYKVFTFFKKKVIQNLHNNIPQCFPVPSKRKSDRD 183
Query: 180 MSRCPSDTLVFEDESEKGSNALLARAWSP-GWSNADKALTTFINGPLIEYSKNRRKADSA 238
+ S K N + + P G A L F +Y R
Sbjct: 184 --------IFLTSISLKNVNLNFNKNFFPVGEKEAINRLKNFCIYKFNDYFLKRDYPFLD 235
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKS-----IGLREYS 293
TS LSP+L G +S R ++ + S +N+ L S I RE+
Sbjct: 236 ATSMLSPYLSAGIISSRYCLKVLLKTKNSLP----------LNVLLTSPWFDQILWREFY 285
Query: 294 RYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHD 352
++ P S L+ K W+ + +F AW++G TG+P++DAGMR+L GW+H+
Sbjct: 286 YHLLIGFPKISRSESLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHN 345
Query: 353 RIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNP 412
R+R++ SSF VK L + WR G ++F L+D DL + GWQ+ + D + RI NP
Sbjct: 346 RLRMITSSFLVKNLLINWREGEEHFISNLIDGDLALNNGGWQWSASVGCDSVPYIRIFNP 405
Query: 413 QFEGYKFDPNGEYVRRWLPELARLPTEWIHHP--WNAPESVLQAAGIELGSNYPFPIV 468
+ FD +G ++++++PEL +P IH P W+ ++ +YP PI+
Sbjct: 406 LHQSKTFDESGNFIKKFIPELKNVPNHHIHQPHEWSKQKN--------FKIDYPNPII 455
>sp|P27526|PHR_NEUCR Deoxyribodipyrimidine photo-lyase OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=phr-1 PE=3 SV=1
Length = 642
Score = 178 bits (451), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 134/512 (26%), Positives = 239/512 (46%), Gaps = 47/512 (9%)
Query: 4 RGCSIVWFRRDLRVEDNPAL----AAGVRAGA-VIAVFIWAPEEEGPYYPGRVSRWWLKH 58
R + WF+ DLR+ DN +L AG +I +++ +PE+ + + ++
Sbjct: 134 RQAVVHWFKMDLRLHDNRSLWLASQKAKEAGVPLICLYVLSPEDLEAHLRAPIRVDFMLR 193
Query: 59 SLSHLDSSLRSLGTSL---VTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRA 115
+L L + L LG L ++ + + + E++K+ GA+ LF Y+ L R+ +
Sbjct: 194 TLEVLKTDLEDLGIPLWVETVEKRKEVPTKIKELMKSWGASHLFCAMEYEVDELRREAKL 253
Query: 116 KEALTAQGIAVRSFNADLLYE-----PWDVNDAQGQPFATFAAFWE----------KCLS 160
+ L A+G AD++++ P + G +A ++ ++ +CL
Sbjct: 254 VK-LLAEGEKGEKMAADVVHDTCVVMPGALQSGSGGQYAVYSPWFRAWIKHIEENPECLE 312
Query: 161 MPFDPDAPLLPPKRINSGDMSRC-----PSDTLVFEDESEKGSNALLARAWSPGWSNADK 215
+ ++ P P + ++ C P + +DE A W G A K
Sbjct: 313 I-YEKPGPNPPGTKEKHENLFACSIPEAPEGKRLRDDE-----KARYHSLWPAGEHEALK 366
Query: 216 ALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKA 275
L F + + +Y++ R TS LS H G +S R R + + G
Sbjct: 367 RLEKFCDEAIGKYAERRNIPAMQGTSNLSVHFASGTLSARTAIRTARDRNNTKKLNG--- 423
Query: 276 GDESVNLFLKSIGLREYSRYMSFNHPY-SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGY 334
G+E + ++ + R++ +++ + PY +P W + +F AW QGRTG+
Sbjct: 424 GNEGIQRWISEVAWRDFYKHVLVHWPYVCMNKPFKPTYSNIEWSYNVDHFHAWTQGRTGF 483
Query: 335 PLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQ 394
P++DA MR++ +TG++H+R+R++V+SF K L + WR G +YF + L+D D S+ GW
Sbjct: 484 PIIDAAMRQVLSTGYMHNRLRMIVASFLAKDLLVDWRMGERYFMEHLIDGDFASNNGGWG 543
Query: 395 YISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPT------EWIHHPWNAP 448
+ + D + + R+ NP + KFDP+G+Y+R+W+ EL LP IH P+
Sbjct: 544 FAASVGVDPQPYFRVFNPLLQSEKFDPDGDYIRKWVEELRDLPELKGGKGGEIHDPYGRG 603
Query: 449 ESVLQAAGIELGSNYPFPIVRIDAAKCRLDEA 480
++ E G YP PIV A+ R +A
Sbjct: 604 SEKVKKKLEEKG--YPRPIVEHSGARDRALDA 633
>sp|P05327|PHR_SYNP6 Deoxyribodipyrimidine photo-lyase OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=phr PE=1 SV=4
Length = 484
Score = 177 bits (449), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 132/472 (27%), Positives = 217/472 (45%), Gaps = 33/472 (6%)
Query: 8 IVWFRRDLRVEDNPALAAG-VRAGAVIAVFIWAPE--EEGPYYPGRVSRWWLKHSLSHLD 64
+ W RRDLR+ DN LAA ++ +I +F P+ + P RV+ +L+ L L
Sbjct: 6 LFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVA--YLQGCLQELQ 63
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ G+ L+ + D + ++ + A +++N +P RD + AL GI
Sbjct: 64 QRYQQAGSRLLLLQG-DPQHLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGI 122
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRCP 184
LL+ P + G P++ + FW+ + P P P + ++
Sbjct: 123 RAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQP-KPTPVATPTELVDLSPEQLTA 181
Query: 185 SDTLVFEDESEKGSNALLARAWS------PGWSNADKALTTFINGPLIEYSKNRRKADSA 238
L+ SE + L W PG + A L F + + +Y R A
Sbjct: 182 IAPLLL---SELPTLKQLGFDWDGGFPVEPGETAAIARLQEFCDRAIADYDPQRNFPAEA 238
Query: 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQ-VSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297
TS LSP L FG + +R+ + +S ++E S+ ++ + + RE+ ++
Sbjct: 239 GTSGLSPALKFGAIGIRQAWRAASAAHALSRSDEARN----SIRVWQQELAWREFYQHAL 294
Query: 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVV 357
++ P + P + F W E F AW Q +TGYP+VDA MR+L TGW+H+R ++
Sbjct: 295 YHFPSLADGPYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCWMI 354
Query: 358 VSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGY 417
V+SF K L + WR G ++F L+D DL ++ GWQ+ + + D + RI NP +
Sbjct: 355 VASFLTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQWSASSGMDPKPL-RIFNPASQAK 413
Query: 418 KFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELG-SNYPFPIV 468
KFD Y++RWLPEL +H P+ ++ +G YP PIV
Sbjct: 414 KFDATATYIKRWLPELRH-----VH-----PKDLISGEITPIGRRGYPAPIV 455
>sp|Q8QG60|CRY2_CHICK Cryptochrome-2 OS=Gallus gallus GN=CRY2 PE=2 SV=2
Length = 582
Score = 169 bits (429), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 159/533 (29%), Positives = 248/533 (46%), Gaps = 46/533 (8%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVI-AVFIWAPEEEGPYYPGRVSRW-WLKHSLSHLD 64
S+ WFRR LR+ DNPAL A +R A + ++I P G ++RW +L SL LD
Sbjct: 14 SVHWFRRGLRLHDNPALQAALRGAASLRCIYILDPWFAASSAVG-INRWRFLLQSLEDLD 72
Query: 65 SSLRSLGTSLVTKRS--TDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQ 122
+SLR L + L R TD L K G T+L F + +P RD +
Sbjct: 73 NSLRKLNSRLFVVRGQPTDVFPRLF---KEWGVTRLAFEYDSEPFGKERDAAIIKLAKEA 129
Query: 123 GIAVRSFNADLLYEPWDVNDAQG-QPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMS 181
G+ V N+ LY + + G +P T+ F M + P P I S M
Sbjct: 130 GVEVVIENSHTLYNLDRIIELNGNKPPLTYKRFQAIISRM----ELPKKPVSSIVSQQME 185
Query: 182 RCPSDTLVFEDE-------SEKG--SNALLARAWSPGWSNADKALTTFINGP--LIEYSK 230
C D D+ E G ++ L W G + A L + + Y +
Sbjct: 186 TCKVDIQENHDDVYGVPSLEELGFPTDGLAPAVWQGGETEALARLDKHLERKAWVANYER 245
Query: 231 NRRKADS--ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIG 288
R A+S A+ + LSP+L FG +S R ++ R+ ++ + N S+ +
Sbjct: 246 PRMNANSLLASPTGLSPYLRFGCLSCRLFYY--RLWELYKKVKRNSTPPLSL---YGQLL 300
Query: 289 LREYSRYMSFNHPY---SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELW 345
RE+ + N+P P+ + W + W +G+TG+P +DA M +L
Sbjct: 301 WREFFYTAATNNPKFDRMEGNPICIQI---PWDKNPEALAKWAEGKTGFPWIDAIMTQLR 357
Query: 346 ATGWLHDRIRVVVSSFFVKV-LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 404
GW+H R V+ F + L + W G++ F + LLDAD +A W ++S + +
Sbjct: 358 QEGWIHHLARHAVACFLTRGDLWISWESGVRVFDELLLDADFSVNAGSWMWLSCSA-FFQ 416
Query: 405 AFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
F P G + DP+G+YV+R+LP+L P+ +I+ PWNAPESV +AA +G +YP
Sbjct: 417 QFFHCYCPVGFGRRTDPSGDYVKRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYP 476
Query: 465 FPIVRIDAAKCRLD-EALSEMWQQEAASR-----AAIENGTEEGLGDSSDSAP 511
P+V A RL+ E + +++QQ + R A++ + E+ G +DSAP
Sbjct: 477 KPMVN-HAETSRLNIERMKQIYQQLSRYRGLCLLASVPSCVEDLSGPVTDSAP 528
>sp|Q3IPX9|CRYD_NATPD Cryptochrome DASH OS=Natronomonas pharaonis (strain DSM 2160 / ATCC
35678) GN=cry PE=3 SV=1
Length = 474
Score = 169 bits (428), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 143/477 (29%), Positives = 213/477 (44%), Gaps = 20/477 (4%)
Query: 6 CSIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPE-----EEGPYYPGRVSRWWLKHS 59
++VWFR DLRV DNP LA V A VI V+ + P+ E GP G + + +
Sbjct: 3 TAVVWFRDDLRVTDNPTLADAVAAAETVIPVYTFDPDRYTESEYGPPKTGGHRAVFRRQA 62
Query: 60 LSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
++ L +SLR G L+ RS + + E+ + GA ++ R AL
Sbjct: 63 VADLRASLRDRGGDLLV-RSGRPATVVPELAQRAGADAVYAQTKPATEERRRAADVASAL 121
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGD 179
GIA+R LY P D+ TF W K P P+ + + D
Sbjct: 122 DDAGIALRQRWTHTLYHPDDLPTPPTDIDDTFTP-WRKETEAAATVRDPRSAPETVPTPD 180
Query: 180 -MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFI--NGPLIEYSKNRRKAD 236
++ P T+ SE ++ + G S + + ++I L EY R
Sbjct: 181 GLTPGPVPTVESLGVSEPPTDDRAVLEFEGGESAGKRRVESYIWEGDHLREYKTTRNGLL 240
Query: 237 SAT-TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
A +S SP L G +S R + V E + +E + + R++ ++
Sbjct: 241 GADYSSKFSPWLAAGCLSPRWLHREVE------RYEDERVANEDTYWLVFELAWRDFFQF 294
Query: 296 MSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIR 355
+ + +P + W D F+ W G TG P VDA MREL TG++ +R R
Sbjct: 295 QFEKYGATFFKPGGIRERNIDWDRDRALFERWADGETGVPFVDANMRELNRTGYMSNRGR 354
Query: 356 VVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFE 415
V+SF VL + WRWG YF L+D D+ S+ W Y +G D R DR + + +
Sbjct: 355 QNVASFLAGVLGIDWRWGAAYFEARLIDYDVASNWGNWAYQAGVGNDSR--DRYFDVRSQ 412
Query: 416 GYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDA 472
++D + EY+ WLPELA LP H PW E+ + G+ELG +YP P+V IDA
Sbjct: 413 AERYDSDAEYITTWLPELAALPATIAHQPWQLSEAEQREYGVELGVDYPEPVVDIDA 469
>sp|P77967|CRYD_SYNY3 Cryptochrome DASH OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=cry PE=1 SV=2
Length = 489
Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 142/487 (29%), Positives = 229/487 (47%), Gaps = 51/487 (10%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYYPG--RVSRW---WLKHSLS 61
+VWFR DLR+ D+ L +++G A+ AV+ + P + + G + W +L+ S+
Sbjct: 9 LVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQ 68
Query: 62 HLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTA 121
+L SL+ +G L+ + ++ K A ++++ L + + LT
Sbjct: 69 NLAESLQKVGNKLLVTTGLPE-QVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTI 127
Query: 122 QGIAVRSFNADLLYEPWDVN-DAQGQP--FATFAAFWEK-------CLSMPFDPDAPLLP 171
GI + + L P D+ Q P F F EK C P + LLP
Sbjct: 128 LGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKISIRPCFFAP----SQLLP 183
Query: 172 PKRINSGDMSRCPSD---TLVFEDES----EKGSNALLARAWSPGWSNADKALTTFINGP 224
I +++ P + + F+ S + G A LAR W + D+
Sbjct: 184 SPNIKL-ELTAPPPEFFPQINFDHRSVLAFQGGETAGLARLQDYFW-HGDR--------- 232
Query: 225 LIEYSKNRRKADSAT-TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLF 283
L +Y + R A +S SP L G +S R ++ V+ E + ++S +
Sbjct: 233 LKDYKETRNGMVGADYSSKFSPWLALGCLSPRFIYQEVK------RYEQERVSNDSTHWL 286
Query: 284 LKSIGLREYSRYMSFNHPYSHERPLLGHL--KFFSWVVDEGYFKAWRQGRTGYPLVDAGM 341
+ + R++ R+++ Y ++ G L K F W D+ F+ WR G+TGYPLVDA M
Sbjct: 287 IFELLWRDFFRFVA--QKYGNKLFNRGGLLNKNFPWQEDQVRFELWRSGQTGYPLVDANM 344
Query: 342 RELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIP 401
REL TG++ +R R V+SF K L + WRWG ++F L+D D+ S+ W Y +G
Sbjct: 345 RELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDYDVCSNWGNWNYTAGIGN 404
Query: 402 DGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGS 461
D R F + P+ + ++DP G Y+R WLPEL LP + IH PW + + G++LG
Sbjct: 405 DARDFRYFNIPK-QSQQYDPQGTYLRHWLPELKNLPGDKIHQPWLLSATEQKQWGVQLGV 463
Query: 462 NYPFPIV 468
+YP P V
Sbjct: 464 DYPRPCV 470
>sp|Q9R194|CRY2_MOUSE Cryptochrome-2 OS=Mus musculus GN=Cry2 PE=1 SV=1
Length = 592
Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 152/510 (29%), Positives = 241/510 (47%), Gaps = 41/510 (8%)
Query: 7 SIVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPEEEGPYYPGRVSRW-WLKHSLSHLD 64
S+ WFR+ LR+ DNPAL A VR A V V+I P G ++RW +L SL LD
Sbjct: 23 SVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVG-INRWRFLLQSLEDLD 81
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+SLR L + L R + + K G T+L F + +P RD + G+
Sbjct: 82 TSLRKLNSRLFVVRGQPA-DVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGV 140
Query: 125 AVRSFNADLLYEPWDVNDAQGQ-PFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
V + N+ LY+ + + GQ P T+ F M + P P ++S M C
Sbjct: 141 EVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRM----ELPKKPAVAVSSQQMESC 196
Query: 184 PSDTLVFEDES-------EKG--SNALLARAWSPGWSNADKALTTFINGP--LIEYSKNR 232
++ D++ E G + L W G + A L + + Y + R
Sbjct: 197 RAEIQENHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPR 256
Query: 233 RKADS--ATTSFLSPHLHFGEVSVRKVFHLV--RIKQVSWANEGNKAGDESVNLFLKSIG 288
A+S A+ + LSP+L FG +S R ++ + K+V + ++LF + +
Sbjct: 257 MNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKV------KRNSTPPLSLFGQLL- 309
Query: 289 LREYSRYMSFNHPY---SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELW 345
RE+ + N+P P+ + W + W +G+TG+P +DA M +L
Sbjct: 310 WREFFYTAATNNPRFDRMEGNPICIQI---PWDRNPEALAKWAEGKTGFPWIDAIMTQLR 366
Query: 346 ATGWLHDRIRVVVSSFFVKV-LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 404
GW+H R V+ F + L + W G++ F + LLDAD +A W ++S + +
Sbjct: 367 QEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSA-FFQ 425
Query: 405 AFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
F P G + DP+G+Y+RR+LP+L P+ +I+ PWNAPESV +AA +G +YP
Sbjct: 426 QFFHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAAKCIIGVDYP 485
Query: 465 FPIVRIDAAKCRLD-EALSEMWQQEAASRA 493
PIV A RL+ E + +++QQ + R
Sbjct: 486 RPIVN-HAETSRLNIERMKQIYQQLSRYRG 514
>sp|Q49AN0|CRY2_HUMAN Cryptochrome-2 OS=Homo sapiens GN=CRY2 PE=1 SV=2
Length = 593
Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 152/510 (29%), Positives = 240/510 (47%), Gaps = 41/510 (8%)
Query: 7 SIVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPEEEGPYYPGRVSRW-WLKHSLSHLD 64
S+ WFR+ LR+ DNPAL A VR A V V+I P G ++RW +L SL LD
Sbjct: 24 SVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVG-INRWRFLLQSLEDLD 82
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+SLR L + L R + + K G T+L F + +P RD + G+
Sbjct: 83 TSLRKLNSRLFVVRGQPA-DVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGV 141
Query: 125 AVRSFNADLLYEPWDVNDAQGQ-PFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
V + N+ LY+ + + GQ P T+ F M + P P + S M C
Sbjct: 142 EVVTENSHTLYDLDRIIELNGQKPPLTYKRFQAIISRM----ELPKKPVGLVTSQQMESC 197
Query: 184 PSDTLVFEDES-------EKG--SNALLARAWSPGWSNADKALTTFINGP--LIEYSKNR 232
++ DE+ E G + L W G + A L + + Y + R
Sbjct: 198 RAEIQENHDETYGVPSLEELGFPTEGLGPAVWQGGETEALARLDKHLERKAWVANYERPR 257
Query: 233 RKADS--ATTSFLSPHLHFGEVSVRKVFHLV--RIKQVSWANEGNKAGDESVNLFLKSIG 288
A+S A+ + LSP+L FG +S R ++ + K+V + ++LF + +
Sbjct: 258 MNANSLLASPTGLSPYLRFGCLSCRLFYYRLWDLYKKV------KRNSTPPLSLFGQLL- 310
Query: 289 LREYSRYMSFNHPY---SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELW 345
RE+ + N+P P+ + W + W +G+TG+P +DA M +L
Sbjct: 311 WREFFYTAATNNPRFDRMEGNPICIQI---PWDRNPEALAKWAEGKTGFPWIDAIMTQLR 367
Query: 346 ATGWLHDRIRVVVSSFFVKV-LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 404
GW+H R V+ F + L + W G++ F + LLDAD +A W ++S + +
Sbjct: 368 QEGWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSA-FFQ 426
Query: 405 AFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
F P G + DP+G+Y+RR+LP+L P+ +I+ PWNAPES+ +AA +G +YP
Sbjct: 427 QFFHCYCPVGFGRRTDPSGDYIRRYLPKLKAFPSRYIYEPWNAPESIQKAAKCIIGVDYP 486
Query: 465 FPIVRIDAAKCRLD-EALSEMWQQEAASRA 493
PIV A RL+ E + +++QQ + R
Sbjct: 487 RPIVN-HAETSRLNIERMKQIYQQLSRYRG 515
>sp|Q923I8|CRY2_RAT Cryptochrome-2 OS=Rattus norvegicus GN=Cry2 PE=2 SV=1
Length = 594
Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 150/508 (29%), Positives = 239/508 (47%), Gaps = 37/508 (7%)
Query: 7 SIVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPEEEGPYYPGRVSRW-WLKHSLSHLD 64
S+ WFR+ LR+ DNPAL A VR A V V+I P G ++RW +L SL LD
Sbjct: 23 SVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVG-INRWRFLLQSLEDLD 81
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+SLR L + L R + + K G T+L F + +P RD + G+
Sbjct: 82 TSLRKLNSRLFVVRGQPA-DVFPRLFKEWGVTRLTFEYDSEPFGKERDAAIMKMAKEAGV 140
Query: 125 AVRSFNADLLYEPWDVNDAQGQ-PFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSRC 183
V + N+ LY+ + + GQ P T+ F M + P P ++S M C
Sbjct: 141 EVVTENSHTLYDLDRIIELNGQKPPLTYKRFQALISRM----ELPKKPVGAVSSQHMENC 196
Query: 184 PSDTLVFEDES-------EKG--SNALLARAWSPGWSNADKALTTFINGP--LIEYSKNR 232
++ D++ E G + L W G + A L + + Y + R
Sbjct: 197 RAEIQENHDDTYGVPSLEELGFPTEGLGPAVWQGGETEALVRLDKHLERKAWVANYERPR 256
Query: 233 RKADS--ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLR 290
A+S A+ + LSP+L FG +S R ++ + + + ++LF + + R
Sbjct: 257 MNANSLLASPTGLSPYLRFGCLSCRLFYY----RLWDLYRKVKRNSTPPLSLFGQLL-WR 311
Query: 291 EYSRYMSFNHPY---SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWAT 347
E+ + N+P P+ + W + W +G+TG+P +DA M +L
Sbjct: 312 EFFYTAATNNPRFDRMEGNPICIQI---PWDRNPEALAKWAEGKTGFPWIDAIMTQLRQE 368
Query: 348 GWLHDRIRVVVSSFFVKV-LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAF 406
GW+H R V+ F + L + W G++ F + LLDAD +A W ++S + + F
Sbjct: 369 GWIHHLARHAVACFLTRGDLWVSWESGVRVFDELLLDADFSVNAGSWMWLSCSA-FFQQF 427
Query: 407 DRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFP 466
P G + DP+G+Y+RR+LP+L P+ +I+ PWNAPESV +AA +G +YP P
Sbjct: 428 FHCYCPVGFGRRTDPSGDYIRRYLPKLKGFPSRYIYEPWNAPESVQKAANCIIGVDYPRP 487
Query: 467 IVRIDAAKCRLD-EALSEMWQQEAASRA 493
IV A RL+ E + +++QQ + R
Sbjct: 488 IVN-HAETSRLNIERMKQIYQQLSRYRG 514
>sp|Q5IZC5|CRY1_ERIRU Cryptochrome-1 OS=Erithacus rubecula GN=CRY1 PE=2 SV=2
Length = 620
Score = 166 bits (420), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 151/511 (29%), Positives = 237/511 (46%), Gaps = 43/511 (8%)
Query: 7 SIVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPEEEGPYYPGRVSRW-WLKHSLSHLD 64
++ WFR+ LR+ DNPAL +R A V V+I P G G ++RW +L L LD
Sbjct: 5 AVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAGSSNVG-INRWRFLLQCLEDLD 63
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
++LR L + L R + + K +L + +P RD K+ + G+
Sbjct: 64 ANLRKLNSRLFVIRGQPA-DVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKKLASEAGV 122
Query: 125 AVRSFNADLLYEPWDVNDAQG-QPFATFAAFWEKCLSMPFDPDAPL-LPPKRINSGDMSR 182
V + LY+ + + G QP T+ F M PL +P + I M +
Sbjct: 123 EVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRM-----EPLEMPVETITPEVMKK 177
Query: 183 CPSDTLVFEDESEK-----------GSNALLARAWSPGWSNADKALTTFI--NGPLIEYS 229
C T VF+D EK ++ L + W G + A L + + +
Sbjct: 178 C--TTPVFDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKASVANFE 235
Query: 230 KNRRKADS--ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSI 287
+ R A+S A+ + LSP+L FG +S R L K + K ++L+ + +
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCR----LFYFKLTDLYKKVKKNSSPPLSLYGQLL 291
Query: 288 GLREYSRYMSFNHPYSHE---RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMREL 344
RE+ + N+P + P+ + W + W +GRTG+P +DA M +L
Sbjct: 292 -WREFFYTAATNNPRFDKMEGNPICVQI---PWDKNPEALAKWAEGRTGFPWIDAIMTQL 347
Query: 345 WATGWLHDRIRVVVSSFFVKV-LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDG 403
GW+H R V+ F + L + W GMK F + LLDAD +A W ++S +
Sbjct: 348 RQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCS-SFF 406
Query: 404 RAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNY 463
+ F P G + DPNG+Y+RR+LP L P ++I+ PWNAPES+ +AA +G NY
Sbjct: 407 QQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNY 466
Query: 464 PFPIVRIDAAKCRLD-EALSEMWQQEAASRA 493
P P+V A RL+ E + +++QQ + R
Sbjct: 467 PKPMVN-HAEASRLNIERMKQIYQQLSRYRG 496
>sp|O48652|UVR3_ARATH (6-4)DNA photolyase OS=Arabidopsis thaliana GN=UVR3 PE=1 SV=2
Length = 556
Score = 163 bits (413), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 153/531 (28%), Positives = 245/531 (46%), Gaps = 46/531 (8%)
Query: 2 SGRGCSIVWFRRDLRVEDNPALAAGVRAGAVI-AVFIWAPE--EEGP--YYPGR----VS 52
+G G S++WFR+ LRV DNPAL + + VF+ P E P + PG V+
Sbjct: 22 TGSG-SLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVN 80
Query: 53 RW-WLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVR 111
R +L SL LDSSL+ LG+ L+ + + L+ ++ +L F + DP
Sbjct: 81 RIRFLLESLKDLDSSLKKLGSRLLVFKG-EPGEVLVRCLQEWKVKRLCFEYDTDPYYQAL 139
Query: 112 DHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQG-QPFATFAAFWE-----KCLSMPFDP 165
D + K+ ++ G+ V S + L+ P + + G +P ++ +F + C
Sbjct: 140 DVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPLSYQSFLKVAGEPSCAKSELVM 199
Query: 166 DAPLLPP-KRINSGDMSRCPS-DTLVFEDESEKGSNALLARAWSP---GWSNADKALTTF 220
LPP I + +S PS + L ++D+ + W+P G S A K LT
Sbjct: 200 SYSSLPPIGDIGNLGISEVPSLEELGYKDDEQAD--------WTPFRGGESEALKRLTKS 251
Query: 221 INGPLIEYSKNRRKADSAT-----TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKA 275
I+ + + K D + T+ +SP+L FG +S R + ++ + + K
Sbjct: 252 ISDKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQ----NIYKDVKKH 307
Query: 276 GDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYP 335
V+L L + RE+ +F P + K W D AWR G+TGYP
Sbjct: 308 TSPPVSL-LGQLLWREFFYTTAFGTPNFDKMKGNRICKQIPWNEDHAMLAAWRDGKTGYP 366
Query: 336 LVDAGMRELWATGWLHDRIRVVVSSFFVKV-LQLPWRWGMKYFWDTLLDADLESDALGWQ 394
+DA M +L GW+H R V+ F + L + W G F L+D+D + W
Sbjct: 367 WIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVFERLLIDSDWAINNGNWM 426
Query: 395 YISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQA 454
++S + F+RI +P G K+DP+G+Y+R +LP L +P ++I+ PW AP SV
Sbjct: 427 WLSCS-SFFYQFNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTK 485
Query: 455 AGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGLGD 505
A +G +YP P+V D+A E +M + A ++ EE L D
Sbjct: 486 ANCIVGKDYPKPMVLHDSAS---KECKRKMGEAYALNKKMDGKVDEENLRD 533
>sp|Q8QG61|CRY1_CHICK Cryptochrome-1 OS=Gallus gallus GN=CRY1 PE=2 SV=1
Length = 621
Score = 162 bits (410), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 150/508 (29%), Positives = 233/508 (45%), Gaps = 37/508 (7%)
Query: 7 SIVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPEEEGPYYPGRVSRW-WLKHSLSHLD 64
++ WFR+ LR+ DNPAL +R A V V+I P G G ++RW +L L LD
Sbjct: 5 AVHWFRKGLRLHDNPALRECIRGADTVRCVYILDPWFAGSSNVG-INRWRFLLQCLEDLD 63
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
++LR L + L R + + K +L + +P RD K+ + G+
Sbjct: 64 ANLRKLNSRLFVIRGQPA-DVFPRLFKEWSIAKLSIEYDSEPFGKERDAAIKKLASEAGV 122
Query: 125 AVRSFNADLLYEPWDVNDAQG-QPFATFAAFWEKCLSMPFDPDAPL-LPPKRINSGDMSR 182
V + LY+ + + G QP T+ F M PL +P + I M +
Sbjct: 123 EVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRM-----EPLEMPVETITPEVMQK 177
Query: 183 CPSDTLVFEDESEK-----------GSNALLARAWSPGWSNADKALTTFINGP--LIEYS 229
C T V +D EK ++ L + W G + A L + + +
Sbjct: 178 C--TTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235
Query: 230 KNRRKADS--ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSI 287
+ R A+S A+ + LSP+L FG +S R L K + K ++L+ + +
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCR----LFYFKLTDLYKKVKKNSSPPLSLYGQLL 291
Query: 288 GLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWAT 347
RE+ + N+P + W + W +GRTG+P +DA M +L
Sbjct: 292 -WREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350
Query: 348 GWLHDRIRVVVSSFFVKV-LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAF 406
GW+H R V+ F + L + W GMK F + LLDAD +A W ++S + + F
Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCS-SFFQQF 409
Query: 407 DRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFP 466
P G + DPNG+Y+RR+LP L P ++I+ PWNAPESV +AA +G NYP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESVQKAAKCVIGVNYPKP 469
Query: 467 IVRIDAAKCRLD-EALSEMWQQEAASRA 493
+V A RL+ E + +++QQ + R
Sbjct: 470 MVN-HAEASRLNIERMKQIYQQLSRYRG 496
>sp|Q16526|CRY1_HUMAN Cryptochrome-1 OS=Homo sapiens GN=CRY1 PE=1 SV=1
Length = 586
Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 153/537 (28%), Positives = 246/537 (45%), Gaps = 51/537 (9%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVI-AVFIWAPEEEGPYYPGRVSRW-WLKHSLSHLD 64
++ WFR+ LR+ DNPAL ++ I V+I P G G ++RW +L L LD
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVG-INRWRFLLQCLEDLD 63
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
++LR L + L R + + K T+L + +P RD K+ T G+
Sbjct: 64 ANLRKLNSRLFVIRGQPA-DVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGV 122
Query: 125 AVRSFNADLLYEPWDVNDAQG-QPFATFAAFWEKCLSMPFDPDAPL-LPPKRINSGDMSR 182
V + LY+ + + G QP T+ F M PL +P + I S + +
Sbjct: 123 EVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM-----EPLEIPVETITSEVIEK 177
Query: 183 CPSDTLVFEDESEK-----------GSNALLARAWSPGWSNADKALTTFINGP--LIEYS 229
C T + +D EK ++ L + W G + A L + + +
Sbjct: 178 C--TTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFE 235
Query: 230 KNRRKADS--ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSI 287
+ R A+S A+ + LSP+L FG +S R L K + K ++L+ + +
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCR----LFYFKLTDLYKKVKKNSSPPLSLYGQLL 291
Query: 288 GLREYSRYMSFNHPYSHE---RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMREL 344
RE+ + N+P + P+ + W + W +GRTG+P +DA M +L
Sbjct: 292 -WREFFYTAATNNPRFDKMEGNPICVQI---PWDKNPEALAKWAEGRTGFPWIDAIMTQL 347
Query: 345 WATGWLHDRIRVVVSSFFVKV-LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDG 403
GW+H R V+ F + L + W GMK F + LLDAD +A W ++S +
Sbjct: 348 RQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCS-SFF 406
Query: 404 RAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNY 463
+ F P G + DPNG+Y+RR+LP L P ++I+ PWNAPE + + A +G NY
Sbjct: 407 QQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNY 466
Query: 464 PFPIVRIDAAKCRLD-EALSEMWQQEA--------ASRAAIENGTEEGLGDSSDSAP 511
P P+V A RL+ E + +++QQ + AS + NG +G S+++ P
Sbjct: 467 PKPMVN-HAEASRLNIERMKQIYQQLSRYRGLGLLASVPSNPNGNGGFMGYSAENIP 522
>sp|Q32Q86|CRY1_RAT Cryptochrome-1 OS=Rattus norvegicus GN=Cry1 PE=2 SV=1
Length = 588
Score = 160 bits (405), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 147/511 (28%), Positives = 234/511 (45%), Gaps = 43/511 (8%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVI-AVFIWAPEEEGPYYPGRVSRW-WLKHSLSHLD 64
++ WFR+ LR+ DNPAL ++ I V+I P G G ++RW +L L LD
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVG-INRWRFLLQCLEDLD 63
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
++LR L + L R + + K T+L + +P RD K+ T G+
Sbjct: 64 ANLRKLNSRLFVIRGQPA-DVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGV 122
Query: 125 AVRSFNADLLYEPWDVNDAQG-QPFATFAAFWEKCLSMPFDPDAPL-LPPKRINSGDMSR 182
V + LY+ + + G QP T+ F M PL +P I S + +
Sbjct: 123 EVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKM-----EPLEMPADTITSDVIGK 177
Query: 183 CPSDTLVFEDESEK-----------GSNALLARAWSPGWSNADKALTTFINGP--LIEYS 229
C T + +D EK ++ L + W G + A L + + +
Sbjct: 178 C--TTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFE 235
Query: 230 KNRRKADS--ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSI 287
+ R A+S A+ + LSP+L FG +S R L K + K ++L+ + +
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCR----LFYFKLTDLYKKVKKNSSPPLSLYGQLL 291
Query: 288 GLREYSRYMSFNHPYSHE---RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMREL 344
RE+ + N+P + P+ + W + W +GRTG+P +DA M +L
Sbjct: 292 -WREFFYTAATNNPRFDKMEGNPICVQI---PWDKNPEALAKWAEGRTGFPWIDAIMTQL 347
Query: 345 WATGWLHDRIRVVVSSFFVKV-LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDG 403
GW+H R V+ F + L + W GMK F + LLDAD +A W ++S +
Sbjct: 348 RQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCS-SFF 406
Query: 404 RAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNY 463
+ F P G + DPNG+Y+RR+LP L P ++I+ PWNAPE + + A +G NY
Sbjct: 407 QQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNY 466
Query: 464 PFPIVRIDAAKCRLD-EALSEMWQQEAASRA 493
P P+V A RL+ E + +++QQ + R
Sbjct: 467 PKPMVN-HAEASRLNIERMKQIYQQLSRYRG 496
>sp|Q6ZZY0|CRY1_SYLBO Cryptochrome-1 OS=Sylvia borin GN=CRY1 PE=2 SV=1
Length = 620
Score = 159 bits (402), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 148/508 (29%), Positives = 233/508 (45%), Gaps = 37/508 (7%)
Query: 7 SIVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPEEEGPYYPGRVSRW-WLKHSLSHLD 64
++ WFR+ LR+ DNPAL ++ A V V+I P G G ++RW +L L LD
Sbjct: 5 AVHWFRKGLRLHDNPALRECIQGADTVRCVYILDPWFAGSSNVG-INRWRFLLQCLEDLD 63
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
++LR L + L R + + K +L + +P RD K+ + G+
Sbjct: 64 ANLRKLNSRLFVIRGQPA-DVFPRLFKEWNIAKLSIEYDSEPFGKERDAAIKKLASEAGV 122
Query: 125 AVRSFNADLLYEPWDVNDAQG-QPFATFAAFWEKCLSMPFDPDAPL-LPPKRINSGDMSR 182
V + LY+ + + G QP T+ F M PL +P + I M +
Sbjct: 123 EVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISRM-----EPLEMPVETITPEVMKK 177
Query: 183 CPSDTLVFEDESEK-----------GSNALLARAWSPGWSNADKALTTFINGP--LIEYS 229
C T V +D EK ++ L + W G + A L + + +
Sbjct: 178 C--TTPVSDDHDEKYGVPSLEELGFDTDGLPSAVWPGGETEALTRLERHLERKAWVANFE 235
Query: 230 KNRRKADS--ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSI 287
+ R A+S A+ + LSP+L FG +S R L K + K ++L+ + +
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCR----LFYFKLTDLYKKVKKNSSPPLSLYGQLL 291
Query: 288 GLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWAT 347
RE+ + N+P + W + W +GRTG+P +DA M +L
Sbjct: 292 -WREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350
Query: 348 GWLHDRIRVVVSSFFVKV-LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAF 406
GW+H R V+ F + L + W GMK F + LLDAD +A W ++S + + F
Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLSCS-SFFQQF 409
Query: 407 DRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFP 466
P G + DPNG+Y+RR+LP L P ++I+ PWNAPES+ +AA +G NYP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPESIQKAAKCIIGVNYPKP 469
Query: 467 IVRIDAAKCRLD-EALSEMWQQEAASRA 493
+V A RL+ E + +++QQ + R
Sbjct: 470 MVN-HAEASRLNIERMKQIYQQLSRYRG 496
>sp|Q8WP19|CRY1_MACFA Cryptochrome-1 OS=Macaca fascicularis GN=CRY1 PE=2 SV=1
Length = 586
Score = 159 bits (402), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 152/537 (28%), Positives = 246/537 (45%), Gaps = 51/537 (9%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVI-AVFIWAPEEEGPYYPGRVSRW-WLKHSLSHLD 64
++ WFR+ LR+ DNPAL ++ I V+I P G G ++RW +L L LD
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVG-INRWRFLLQCLEDLD 63
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
++LR L + L R + + K T+L + +P RD K+ T G+
Sbjct: 64 ANLRKLNSRLFVIRGQPA-DVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGV 122
Query: 125 AVRSFNADLLYEPWDVNDAQG-QPFATFAAFWEKCLSMPFDPDAPL-LPPKRINSGDMSR 182
V + LY+ + + G QP T+ F M PL +P + I S + +
Sbjct: 123 EVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM-----EPLEIPVETITSEVIEK 177
Query: 183 CPSDTLVFEDESEK-----------GSNALLARAWSPGWSNADKALTTFINGP--LIEYS 229
C T + +D EK ++ L + W G + A L + + +
Sbjct: 178 C--TTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFE 235
Query: 230 KNRRKADS--ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSI 287
+ R A+S A+ + LSP+L FG +S R L K + + ++L+ + +
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCR----LFYFKLTDLYKKVKRNSSPPLSLYGQLL 291
Query: 288 GLREYSRYMSFNHPYSHE---RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMREL 344
RE+ + N+P + P+ + W + W +GRTG+P +DA M +L
Sbjct: 292 -WREFFYTAATNNPRFDKMEGNPICVQI---PWDKNPEALAKWAEGRTGFPWIDAIMTQL 347
Query: 345 WATGWLHDRIRVVVSSFFVKV-LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDG 403
GW+H R V+ F + L + W GMK F + LLDAD +A W ++S +
Sbjct: 348 RQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCS-SFF 406
Query: 404 RAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNY 463
+ F P G + DPNG+Y+RR+LP L P ++I+ PWNAPE + + A +G NY
Sbjct: 407 QQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGINY 466
Query: 464 PFPIVRIDAAKCRLD-EALSEMWQQEA--------ASRAAIENGTEEGLGDSSDSAP 511
P P+V A RL+ E + +++QQ + AS + NG +G S+++ P
Sbjct: 467 PKPMVN-HAEASRLNIERMKQIYQQLSRYRGLGLLASVPSNPNGNGGFMGYSTENIP 522
>sp|P97784|CRY1_MOUSE Cryptochrome-1 OS=Mus musculus GN=Cry1 PE=1 SV=1
Length = 606
Score = 159 bits (402), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 146/508 (28%), Positives = 231/508 (45%), Gaps = 37/508 (7%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVI-AVFIWAPEEEGPYYPGRVSRW-WLKHSLSHLD 64
++ WFR+ LR+ DNPAL ++ I V+I P G G ++RW +L L LD
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVG-INRWRFLLQCLEDLD 63
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
++LR L + L R + + K T+L + +P RD K+ T G+
Sbjct: 64 ANLRKLNSRLFVIRGQPA-DVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGV 122
Query: 125 AVRSFNADLLYEPWDVNDAQG-QPFATFAAFWEKCLSMPFDPDAPL-LPPKRINSGDMSR 182
V + LY+ + + G QP T+ F M PL +P I S + +
Sbjct: 123 EVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLVSKM-----EPLEMPADTITSDVIGK 177
Query: 183 CPSDTLVFEDESEK-----------GSNALLARAWSPGWSNADKALTTFINGP--LIEYS 229
C T + +D EK ++ L + W G + A L + + +
Sbjct: 178 CM--TPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERKAWVANFE 235
Query: 230 KNRRKADS--ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSI 287
+ R A+S A+ + LSP+L FG +S R L K + K ++L+ + +
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCR----LFYFKLTDLYKKVKKNSSPPLSLYGQLL 291
Query: 288 GLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWAT 347
RE+ + N+P + W + W +GRTG+P +DA M +L
Sbjct: 292 -WREFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQE 350
Query: 348 GWLHDRIRVVVSSFFVKV-LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAF 406
GW+H R V+ F + L + W GMK F + LLDAD +A W ++S + + F
Sbjct: 351 GWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCS-SFFQQF 409
Query: 407 DRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFP 466
P G + DPNG+Y+RR+LP L P ++I+ PWNAPE + + A +G NYP P
Sbjct: 410 FHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNYPKP 469
Query: 467 IVRIDAAKCRLD-EALSEMWQQEAASRA 493
+V A RL+ E + +++QQ + R
Sbjct: 470 MVN-HAEASRLNIERMKQIYQQLSRYRG 496
>sp|Q70AD6|CRY1_SPAJD Cryptochrome-1 OS=Spalax judaei GN=CRY1 PE=2 SV=1
Length = 587
Score = 159 bits (401), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 147/511 (28%), Positives = 235/511 (45%), Gaps = 43/511 (8%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVI-AVFIWAPEEEGPYYPGRVSRW-WLKHSLSHLD 64
++ WFR+ LR+ DNPAL ++ I V+I P G G ++RW +L L LD
Sbjct: 5 AVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVG-INRWRFLLQCLEDLD 63
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
++LR L + L+ R + + K T+L + +P RD K+ T G+
Sbjct: 64 ANLRKLNSRLLVIRGQPA-DVFPRLFKEWNITKLSIEYDSEPFGKERDAAIKKLATEAGV 122
Query: 125 AVRSFNADLLYEPWDVNDAQG-QPFATFAAFWEKCLSMPFDPDAPL-LPPKRINSGDMSR 182
V + LY+ + + G QP T+ F M PL +P + I S + +
Sbjct: 123 EVIVRISHTLYDLDKIIELNGGQPPLTYKRFQTLISKM-----EPLEIPVETITSEVIEK 177
Query: 183 CPSDTLVFEDESEK-----------GSNALLARAWSPGWSNADKALTTFIN--GPLIEYS 229
C T + +D EK ++ L + W G + A L + + +
Sbjct: 178 C--TTPLSDDHDEKYGVPSLEELGFDTDGLSSAVWPGGETEALTRLERHLERRAWVANFE 235
Query: 230 KNRRKADS--ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSI 287
+ R A+S A+ + LSP+L FG +S R L K + K ++L+ + +
Sbjct: 236 RPRMNANSLLASPTGLSPYLRFGCLSCR----LFYFKLTDLYKKVKKNSSPPLSLYGQLL 291
Query: 288 GLREYSRYMSFNHPYSHE---RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMREL 344
RE+ + N+P + P+ + W + W +GRTG+P +DA M +L
Sbjct: 292 -WREFFYTAATNNPRFDKMEGNPICVQI---PWDKNPEALAKWAEGRTGFPWIDAIMTQL 347
Query: 345 WATGWLHDRIRVVVSSFFVKV-LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDG 403
GW+H R V+ F L + W GMK F + LLDAD +A W ++S +
Sbjct: 348 RQEGWIHHLARHAVACFLTGSDLWISWEEGMKVFEELLLDADWSINAGSWMWLSCS-SFF 406
Query: 404 RAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNY 463
+ F P G + DPNG+Y+RR+LP L P ++I+ PWNAPE + + A +G NY
Sbjct: 407 QQFFHCYCPVGFGRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNAPEGIQKVAKCLIGVNY 466
Query: 464 PFPIVRIDAAKCRLD-EALSEMWQQEAASRA 493
P P+V A RL+ E + +++QQ + R
Sbjct: 467 PKPMVN-HAEASRLNIERMKQIYQQLSRYRG 496
>sp|Q17DK5|CRY1_AEDAE Cryptochrome-1 OS=Aedes aegypti GN=cry PE=3 SV=1
Length = 545
Score = 157 bits (396), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 130/505 (25%), Positives = 223/505 (44%), Gaps = 50/505 (9%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGA-------VIAVFIWAPEEEGPYYPGRVSRWWLKHS 59
+I+WFR LR+ DNP+L +R + +FI+ E G G +L S
Sbjct: 5 NILWFRHGLRLHDNPSLLEALRNDGTGSESVRLYPIFIFDGESAGTKLVGFNRMKFLLES 64
Query: 60 LSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEAL 119
L+ LD LR +G L + ++V+ + + + +L F +P+ RD +
Sbjct: 65 LADLDRQLREIGGQLYVFKG-NAVNVMRRLFEELNIRKLCFEQDCEPIWKARDDAIQNLC 123
Query: 120 TAQGIAVRSFNADLLYEPWDVNDAQGQ-PFATFAAFWEKCLSMPFDPDAPLLPP--KRIN 176
+ + L++P + G P T+ F + + P P+ P + +
Sbjct: 124 RMMDVKCVEKVSHTLWDPQQIIRTNGGIPPLTYQMFLHT-VDIIGKPPRPVAAPSFEFVE 182
Query: 177 SGDMSRCPSDTLVFEDESE----------KGSNALLARAWSPGWSNADKALTTFINGPLI 226
G + + + + +G+ + + W G + A + L +
Sbjct: 183 FGSIPSILAQEVKLQQVRNLSPEDFGIYYEGNPDISHQQWMGGETKALECLGHRLKQEEE 242
Query: 227 EYSKNRRKADSATTSFLSP------HLHFGEVSVRKVFHLVR--IKQVSWANEGNKAGDE 278
+ A FL P L FG +SVR + V ++V N+ G +
Sbjct: 243 AFLGGYFLPTQAKPEFLVPPTSMSAALRFGCLSVRMFYWCVHDLYEKVQANNQYRNPGGQ 302
Query: 279 SVNLFLKSIGLREYSRYMSFNHPYSHE---RPLLGHLKFFSWVVDEGYFKAWRQGRTGYP 335
+ + REY MS ++P+ E P+ ++ ++ D W++GRTG+P
Sbjct: 303 HIT---GQLIWREYFYTMSVHNPHYAEMEANPICLNIPWYEPKDDS--LDRWKEGRTGFP 357
Query: 336 LVDAGMRELWATGWLHDRIRVVVSSFFVK-VLQLPWRWGMKYFWDTLLDADLESDALGWQ 394
++DA MR+L A GWLH +R + ++F + L + W G+++F LLDAD A W
Sbjct: 358 MIDAAMRQLLAEGWLHHILRNITATFLTRGALWISWEAGVQHFLKYLLDADWSVCAGNWM 417
Query: 395 YISGTIPDGRAFDRI------DNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAP 448
++S + AF+++ +P + DP GEYVRR+LPEL LPT ++H PW AP
Sbjct: 418 WVSSS-----AFEKLLDSSSCTSPIALARRLDPKGEYVRRYLPELKNLPTLYVHEPWKAP 472
Query: 449 ESVLQAAGIELGSNYPFPIVRIDAA 473
V + G +G +YP P++ + AA
Sbjct: 473 LDVQKECGCIVGRDYPAPMIDLAAA 497
>sp|Q7PYI7|CRY1_ANOGA Cryptochrome-1 OS=Anopheles gambiae GN=Cry1 PE=2 SV=4
Length = 545
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 140/556 (25%), Positives = 233/556 (41%), Gaps = 74/556 (13%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAV---------IAVFIWAPEEEGPYYPGRVSRWWLK 57
+I+WFR LR+ DNP+L +++ V +FI+ E G G +L
Sbjct: 5 NILWFRHGLRLHDNPSLLEALKSDCVNQSSEAVKLFPIFIFDGESAGTRIVGYNRMKFLL 64
Query: 58 HSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKE 117
SL+ LD R LG L+ R DSV+ L + + +L + +P+ RD +
Sbjct: 65 ESLADLDRQFRDLGGQLLVFRG-DSVTVLRRLFEELNIKKLCYEQDCEPIWKERDDAVAK 123
Query: 118 ALTAQGIAVRSFNADLLYEPWDVNDAQGQ-PFATFAAFWEKCLSMPFDPDAPLLPPK--- 173
+ + L+ P +V G P T+ F +++ DP P+ P
Sbjct: 124 LCRTMDVRCVENVSHTLWNPIEVIQTNGDIPPLTYQMFLHT-VNIIGDPPRPVGAPNFEY 182
Query: 174 -------RINSGDMSRC-----PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFI 221
+ + ++ C P D + D G+ + + W G + A +AL +
Sbjct: 183 VEFGRVPALLASELKLCQQMPAPDDFGIHYD----GNARIAFQKWIGGETRALEALGARL 238
Query: 222 NGPLIEYSKNRRKADSATTSFLSPH------LHFGEVSVRKVFHLVR--IKQVSWANEGN 273
+ + A L P L FG +SVR + V +V ++
Sbjct: 239 KQEEEAFREGYYLPTQAKPEILGPATSMSAALRFGCLSVRMFYWCVHDLFAKVQSNSQFK 298
Query: 274 KAGDESVNLFLKSIGLREYSRYMSFNHPYSHE---RPLLGHLKFFSWVVDEGYFKAWRQG 330
G + + REY MS +P+ E P+ ++ ++ ++ W++G
Sbjct: 299 YPGGHHIT---GQLIWREYFYTMSVQNPHYGEMERNPICLNIPWYK--PEDDSLTRWKEG 353
Query: 331 RTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKV-LQLPWRWGMKYFWDTLLDADLESD 389
RTG+P++DA MR+L A GWLH +R + ++F + L L W G+++F LLDAD
Sbjct: 354 RTGFPMIDAAMRQLLAEGWLHHILRNITATFLTRGGLWLSWEEGLQHFLKYLLDADWSVC 413
Query: 390 ALGWQYISGTIPDGRAFDRIDN------PQFEGYKFDPNGEYVRRWLPELARLPTEWIHH 443
A W ++S + AF+R+ + P + DP G+YV+R+LPELA P +++H
Sbjct: 414 AGNWMWVSSS-----AFERLLDSSKCTCPIALARRLDPKGDYVKRYLPELANYPAQFVHE 468
Query: 444 PWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASRAAIENGTEEGL 503
PW A G +G YP P+V + R ++ + E L
Sbjct: 469 PWKASREQQIEYGCVIGEKYPAPMVDLAIVSKRNAHTMASL---------------REKL 513
Query: 504 GDSSDSAPIAFPPDIQ 519
D + P P DI+
Sbjct: 514 VDGGSTPPHCRPSDIE 529
>sp|Q7UJB1|CRYD_RHOBA Cryptochrome DASH OS=Rhodopirellula baltica (strain SH1) GN=cry
PE=3 SV=2
Length = 488
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 149/501 (29%), Positives = 209/501 (41%), Gaps = 63/501 (12%)
Query: 7 SIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPE-----EEGPYYPGRVSRWWLKHSLS 61
++VWFR DLR D+ A AV P E G G +L +L+
Sbjct: 4 ALVWFRNDLRTIDHEPFLRASTADRCFAVHCIDPRQFETTELGFQRTGPFRARFLIENLT 63
Query: 62 HLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDH-----RAK 116
L S LRSLG L+ + G + HL L++ H R +
Sbjct: 64 DLRSRLRSLGGELIVR---------------VGRPETVLQHLLPSLAIDAVHFHHEPRTE 108
Query: 117 EALTAQ---------GIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDA 167
EA TA+ GIA D L P ++ F F K + + +
Sbjct: 109 EADTAESVQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPELFTDF-RKEIEKQCEARS 167
Query: 168 PLLPPKRI--------NSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTT 219
PL P RI N+GD+ S L ++ N + G + A + +
Sbjct: 168 PLEEPIRIHGTLPEEVNAGDIPTLESLGLSTPPLDDRCLNQF-----TGGQNAAQQRMEE 222
Query: 220 FI-NGPLIEYSKNRRKA--DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAG 276
+I N + K R +S SP L G +S R + VR E +
Sbjct: 223 YIWNEDRLRVYKETRNGMLHPNDSSKFSPWLAQGCLSPRMIADHVR------RYEEERVK 276
Query: 277 DESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFS--WVVDEGYFKAWRQGRTGY 334
++S + + R+Y R++S H + R G L+ + W D F+ W+ G TGY
Sbjct: 277 NKSTYWMIFELLWRDYFRWISRKHGATLFRA--GGLRGVNVDWKSDRELFRRWQDGTTGY 334
Query: 335 PLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQ 394
PLVDA MREL TG++ +R R V+SF K L + WRWG ++F L+D D+ S+ W
Sbjct: 335 PLVDANMRELRTTGYMSNRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWN 394
Query: 395 YISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQA 454
Y +G D R F R N + +D GEY + WLPEL L IH PW Q
Sbjct: 395 YAAGVGNDARGF-RFFNITKQSRDYDSQGEYAKHWLPELRDLDVTEIHEPWKMSPERQQE 453
Query: 455 AGIELGSNYPFPIVRI-DAAK 474
G LG YP PIV + D+AK
Sbjct: 454 VGATLGKEYPHPIVDLFDSAK 474
>sp|P61496|PHR_THET2 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB27 / ATCC BAA-163 / DSM 7039) GN=phr PE=1 SV=1
Length = 420
Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 123/429 (28%), Positives = 187/429 (43%), Gaps = 41/429 (9%)
Query: 5 GCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
G +VW R DLR+ D+PAL + G V+ + + P P R R W ++ L
Sbjct: 2 GPLLVWHRGDLRLHDHPALLEALARGPVVGLVVLDPNNLK-TTPRR--RAWFLENVRALR 58
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ R+ G +L + E + A ++ Y P RD + +EAL
Sbjct: 59 EAYRARGGALWVLEGL-PWEKVPEAARRLKAKAVYALTSYTPYGRYRDAKVQEALPVPLH 117
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR-C 183
+ + + + + + + F + L + AP PK G++ R
Sbjct: 118 LLPAPHL--------LPPDLPRAYRVYTPFARRFLGVEAPLPAPEALPKGPEEGEIPRED 169
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
P L E G A LA L F+ L Y++ R + D S L
Sbjct: 170 PGLPL-----PEPGEEAALA------------GLRAFLEAKLPRYAEERDRLDGEGGSRL 212
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SP+ G +S R A E + G E ++ + R++S ++ ++ P+
Sbjct: 213 SPYFALGVLSPRLA-----------AWEAERRGGEGARKWVAELLWRDFSYHLLYHFPWM 261
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
ERPL + W DE F+AW +GRTG PLVDA MREL ATG+L +R R+ + F V
Sbjct: 262 AERPLDPRFQALPWQEDEALFRAWYEGRTGVPLVDAAMRELHATGFLSNRARMNAAQFAV 321
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L LPW+ + F LLD D + GWQ+ G D + R+ NP +G + DP G
Sbjct: 322 KHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEG 381
Query: 424 EYVRRWLPE 432
+++RW PE
Sbjct: 382 RWLKRWAPE 390
>sp|Q0E2Y1|UVR3_ORYSJ (6-4)DNA photolyase OS=Oryza sativa subsp. japonica GN=UVR3 PE=3
SV=1
Length = 551
Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 154/539 (28%), Positives = 245/539 (45%), Gaps = 64/539 (11%)
Query: 8 IVWFRRDLRVEDNPAL---AAGVRAGAVIAVFIWAPE----EEGPYYPGR----VSRW-W 55
+VWFR+ LRV DNPAL G A + VF+ P ++ PG V+R +
Sbjct: 16 MVWFRKGLRVHDNPALDAARRGGAAARLYPVFVLDPRYLRPDQAAPSPGSARAGVARVRF 75
Query: 56 LKHSLSHLDSSLRSLGTSLVTKRSTDS---VSSLLEVVKATGATQLFFNHLYDPLSLVRD 112
L SLS LD+ LR LG+ L+ R+ D ++ +K +L F +P +L RD
Sbjct: 76 LLESLSDLDARLRRLGSRLLLLRARDDGDVAGTVCAALKDWNIGKLCFESDTEPYALARD 135
Query: 113 HRAKEALTAQGIAVRSFNADLLYEPWDVNDAQG-QPFATFAAFWEKCLSMPFDPDAPL-- 169
+ + A GI V S + L++P ++ + G +P T+ +F +++ +P P+
Sbjct: 136 KKVMDFAAASGIDVFSPVSHTLFDPAEIIEKNGGRPPMTYQSF----VAIAGEPPEPIME 191
Query: 170 ----LPPKRINSGDMSRCPS---DTLVFEDESEK-------GSNALLARAWSPGWSNADK 215
LPP ++G+ P + L + D S++ G L R S DK
Sbjct: 192 EYSELPPVG-DTGEYELLPVPRVEELGYGDISQEDLSLFRGGETEALKRMRE---SLHDK 247
Query: 216 ALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKA 275
P + S + A T+ LSP+L FG +S R +H ++ S N
Sbjct: 248 EWVAKFEKPKGDPSAFLKPA----TTVLSPYLKFGCLSSRYFYHCIQDIYRSTKKHTNPP 303
Query: 276 GDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYP 335
+ L R++ ++F P + K W +E F AWR GRTGYP
Sbjct: 304 VSLTGQLLW-----RDFFYTVAFGTPNFDQMKGNKICKQIPWTENEELFPAWRDGRTGYP 358
Query: 336 LVDAGMRELWATGWLHDRIRVVVSSFFVKV-LQLPWRWGMKYFWDTLLDADLESDALGWQ 394
+DA M +L GW+H R V+ F + L + W G F L+D+D + W
Sbjct: 359 WIDAIMIQLRKWGWMHHLARHSVACFLTRGDLFIHWEKGRDVFERLLIDSDWAINNGNWM 418
Query: 395 YISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQA 454
++S + + RI +P G K+DPNG Y+R ++P L +P E+I+ PW AP S+ +
Sbjct: 419 WLSCS-SFFYQYHRIYSPTSFGKKYDPNGNYIRHFIPVLKDMPKEYIYEPWTAPLSIQKK 477
Query: 455 AGIELGSNYPFPIV--RIDAAKC-----------RLDEALSEMWQQEAASRAAIENGTE 500
A +G +YP P+V I + +C RLD+ + + +SR + G++
Sbjct: 478 ANCIIGKDYPKPVVDHAIASKECKKMMGEAYASNRLDDDKPDKGKSSNSSRRKLSAGSQ 536
>sp|Q7NMD1|CRYD_GLOVI Cryptochrome DASH OS=Gloeobacter violaceus (strain PCC 7421) GN=cry
PE=3 SV=1
Length = 500
Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 145/516 (28%), Positives = 224/516 (43%), Gaps = 61/516 (11%)
Query: 8 IVWFRRDLRVEDNPALAAGVRAGA-VIAVFIWAPEEEG--PY---YPGRVSRWWLKHSLS 61
+VW+R DLRV D+ L + + A V+A++ + P + G P+ G +L S++
Sbjct: 7 LVWYRNDLRVHDHEPLTSALHKNARVVALYCFDPRQFGKAPFGFEKTGPFRARFLLESVA 66
Query: 62 HLDSSLRSLGTSLVTKRST-DSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT 120
L SLR LG+ L+ +R + V L A + L + RD +A AL
Sbjct: 67 DLRRSLRQLGSDLLVRRGHPEEVIPALVSELEIAAVHYHGEVTSEELVVERDLQA--ALA 124
Query: 121 AQGIAVRSFNADLLYEPWDVN---DAQGQPFATFAAFWEKCLSMPFDPDA---------- 167
+ VRSF L P D+ +A + F F E+ ++ A
Sbjct: 125 PLNVPVRSFWGTTLVHPDDLPFAIEAIPELFTDFRKQVERSAAINPPLPAPAKLPPLPAV 184
Query: 168 -PLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLI 226
P P+ + G S + V + + G + LAR W K+L L
Sbjct: 185 DPGEIPQLADLGLESPVTDERAVLQFKG--GETSGLARLEEYFWQ---KSL-------LK 232
Query: 227 EYSKNRRKADSAT-TSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
Y + R A +S S L G +S R + V+ E + ++S +
Sbjct: 233 SYKQTRNGMLGADYSSKFSAWLALGCLSARYIHEQVQ------TYETKRIKNDSTYWLIF 286
Query: 286 SIGLREYSRYMSFNHPYSHERPLLGHLKFFS---------WVVDEGYFKAWRQGRTGYPL 336
+ R+Y R+++ H G F++ W D F+ WR G+TG+PL
Sbjct: 287 ELLWRDYFRFIAAKH---------GDRLFYTAGLRGLDIPWKEDWERFELWRTGQTGFPL 337
Query: 337 VDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYI 396
VDA MREL ATG++ +R R V+SF K L + W G ++F L+D D+ S+ W Y
Sbjct: 338 VDANMRELAATGFMSNRGRQNVASFLTKNLGIHWHMGAEWFESRLIDYDVASNWGNWNYT 397
Query: 397 SGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAG 456
+G D R F R N + +DP+G YV+ WLPELA LP +H PW + G
Sbjct: 398 AGVGNDARGF-RFFNILKQARDYDPDGAYVKHWLPELAGLPPARVHEPWKLLPVEQKRFG 456
Query: 457 IELGSNYPFPIVRIDAAKCRLDEALSEMWQQEAASR 492
+ LG +YP P+V + + + + W+ R
Sbjct: 457 VRLGVDYPQPVVDLFQSAAANEAIYNAAWEHHHRKR 492
>sp|P61497|PHR_THET8 Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain
HB8 / ATCC 27634 / DSM 579) GN=phr PE=1 SV=1
Length = 420
Score = 143 bits (360), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 121/429 (28%), Positives = 184/429 (42%), Gaps = 41/429 (9%)
Query: 5 GCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLD 64
G +VW R DLR+ D+PAL + G V+ + + P P R R W ++ L
Sbjct: 2 GPLLVWHRGDLRLHDHPALLEALARGPVVGLVVLDPNNLK-TTPRR--RAWFLENVRALR 58
Query: 65 SSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGI 124
+ R+ G +L + E + A ++ + P RD R +EAL
Sbjct: 59 EAYRARGGALWVLEGL-PWEKVPEAARRLKAKAVYALTSHTPYGRYRDGRVREALPVPLH 117
Query: 125 AVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPLLPPKRINSGDMSR-C 183
+ + + + + + + F P PK G++ R
Sbjct: 118 LLPAPHL--------LPPDLPRAYRVYTPFSRLYRGAAPPLPPPEALPKGPEEGEIPRED 169
Query: 184 PSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243
P L E G A LA L F+ L Y++ R + D S L
Sbjct: 170 PGLPL-----PEPGEEAALA------------GLRAFLEAKLPRYAEERDRLDGEGGSRL 212
Query: 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYS 303
SP+ G +S R A E + G E ++ + R++S ++ ++ P+
Sbjct: 213 SPYFALGVLSPRLA-----------AWEAERRGGEGARKWVAELLWRDFSYHLLYHFPWM 261
Query: 304 HERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFV 363
ERPL + F W DE F+AW +G+TG PLVDA MREL ATG+L +R R+ + F V
Sbjct: 262 AERPLDPRFQAFPWQEDEALFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAV 321
Query: 364 KVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNG 423
K L LPW+ + F LLD D + GWQ+ G D + R+ NP +G + DP G
Sbjct: 322 KHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRVFNPVLQGERHDPEG 381
Query: 424 EYVRRWLPE 432
+++RW PE
Sbjct: 382 RWLKRWAPE 390
>sp|Q293P8|CRY1_DROPS Cryptochrome-1 OS=Drosophila pseudoobscura pseudoobscura GN=cry
PE=3 SV=2
Length = 540
Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 145/535 (27%), Positives = 222/535 (41%), Gaps = 74/535 (13%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGV----RAGAVIAVFIWAPEEEGPYYPGRVSRWWL 56
M RG +++WFR LR+ DNPAL A + + +I VFI+ E G G +L
Sbjct: 1 MVPRGANVLWFRHGLRLHDNPALLAALEEKDQGIPLIPVFIFDGESAGTKSVGYNRMRFL 60
Query: 57 KHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSL------- 109
SL LD L+S +T+ L G L F L++ + L
Sbjct: 61 LDSLQDLDEQLQS---------ATEGRGRLFVF---EGEPTLIFRRLHEQVRLHKICAEL 108
Query: 110 -------VRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQ-PFATFAAFWE--KCL 159
RD A+ GI + L++P V + G P T+ F + +
Sbjct: 109 DCEPIWNERDESARLLCRELGIEYVEKVSHTLWDPRLVIETNGGIPPLTYQMFLHTVQII 168
Query: 160 SMPFDP-------DAPLL---PPKRINSGDMSRCPSDTL--VFEDESEKGSNALLARA-W 206
+P P DA + P R + G + P+ ++ D + LA+ W
Sbjct: 169 GVPPRPAIDAHINDATFIQLAPELRQHLGCFDQVPNPEHFNIYSD-----NMGFLAKINW 223
Query: 207 SPGWSNADKALTTFINGPLIEYSKNRRKADSATTSF------LSPHLHFGEVSVRKVFHL 260
G + A L + + + + A + +S HL FG +SVR+ +
Sbjct: 224 RGGETQALALLEERLKVERNAFERGYYLPNQANPNIQEAPKSMSAHLRFGCLSVRRFYWS 283
Query: 261 VR--IKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKF-FSW 317
V + V A E + REY MS N+P +++R + W
Sbjct: 284 VHDLFENVQLAACVRGVQIEGGAHITGQLIWREYFYTMSVNNP-NYDRMEGNEICLTIPW 342
Query: 318 VV-DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK-VLQLPWRWGMK 375
DE + WR G+TG+PL+D MR+L A GWLH +R V++F + L W G+K
Sbjct: 343 AKPDENLLQRWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEPGLK 402
Query: 376 YFWDTLLDADLESDALGWQYISGTIPDGRAFDR------IDNPQFEGYKFDPNGEYVRRW 429
+F LLDAD A W ++S + AF+R + P + DP G Y+RR+
Sbjct: 403 HFLKYLLDADWSVCAGNWMWVSSS-----AFERLLDSSLVTCPVALAKRLDPEGVYIRRY 457
Query: 430 LPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484
+PEL LP E+IH PW +G +YP I+ + A R A++ +
Sbjct: 458 VPELKNLPKEYIHEPWRLSAEQQVKFECLIGVHYPERIIDLSKAVKRNMMAMTAL 512
>sp|Q4KML2|CRYD_DANRE Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 SV=2
Length = 520
Score = 130 bits (328), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 130/492 (26%), Positives = 212/492 (43%), Gaps = 43/492 (8%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPEE-EGPYY-----PGRVSR 53
MS I R DLR+ DN R A +I ++ + P +G Y+ G
Sbjct: 1 MSASRTVICLLRNDLRLHDNEVFHWAQRNAEHIIPLYCFDPRHYQGTYHYNFPKTGPFRL 60
Query: 54 WWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGA-TQLFFNHLYDPLSLVRD 112
+L S+ L + L+ G++L+ ++ + E++K G+ + + F+ +
Sbjct: 61 RFLLDSVKDLRALLKKHGSTLLVRQGKPE-DVVCELIKQLGSVSTVAFHEEVASEEKSVE 119
Query: 113 HRAKEALTAQGIAVRSFNADLLYEPWDV--NDAQGQP--FATFAAFWE---KCLSMPFDP 165
+ KE + V++F LY D+ + G P + F E + + P
Sbjct: 120 EKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVEAQGRVRPVLSTP 179
Query: 166 DAPLLPPKRINSGDMSRC-------PSDTLVFEDESEKGSNALLARAWSPGWSNADKALT 218
+ PP + G + P D G LAR W A+
Sbjct: 180 EQVKSPPSGLEEGPIPTFDSLGQTEPLDDCRSAFPCRGGETEALARLKHYFWDT--NAVA 237
Query: 219 TFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDE 278
T+ + ++N +T F SP L G +S R ++ ++ +V + ++
Sbjct: 238 TY------KETRNGMIGVDFSTKF-SPWLALGCISPRYIYEQIKKYEVE------RTANQ 284
Query: 279 SVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHL--KFFSWVVDEGYFKAWRQGRTGYPL 336
S + + R+Y ++++ Y + + L K W D F AW++GRTG P
Sbjct: 285 STYWVIFELLWRDYFKFVALK--YGNRIFYMNGLQDKHVPWNTDMKMFDAWKEGRTGVPF 342
Query: 337 VDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYI 396
VDA MREL TG++ +R R V+SF K L L WR G ++F L+D D+ S+ W Y
Sbjct: 343 VDANMRELALTGFMSNRGRQNVASFLTKDLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYS 402
Query: 397 SGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAG 456
+G D R +R N +G +D NG+YVR+W+PEL + +H PW S L A
Sbjct: 403 AGIGNDPRE-NRKFNMIKQGLDYDNNGDYVRQWVPELRGIKGGDVHTPWTLSNSALSHAQ 461
Query: 457 IELGSNYPFPIV 468
+ L YP PI+
Sbjct: 462 VSLNQTYPCPII 473
>sp|O77059|CRY1_DROME Cryptochrome-1 OS=Drosophila melanogaster GN=cry PE=1 SV=1
Length = 542
Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 142/529 (26%), Positives = 223/529 (42%), Gaps = 78/529 (14%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPALAAGV----RAGAVIAVFIWAPEEEGPYYPGRVSRWWL 56
M+ RG +++WFR LR+ DNPAL A + + A+I VFI+ E G G +L
Sbjct: 1 MATRGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFL 60
Query: 57 KHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAK 116
SL +D L++ +TD LL G F L++ VR HR
Sbjct: 61 LDSLQDIDDQLQA---------ATDGRGRLLVF---EGEPAYIFRRLHEQ---VRLHRIC 105
Query: 117 EALTAQGI----------AVRSFNADLL----YEPWD----VNDAQGQPFATFAAFWE-- 156
+ I R N D + + WD + G P T+ F
Sbjct: 106 IEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFLHTV 165
Query: 157 KCLSMPFDPDAPL-LPPKRINSGDMSRCPSDTLVFEDESEKGSNA------LLARA-WSP 208
+ + +P P A L D C S L + + + N LA+ W
Sbjct: 166 QIIGLPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNMGFLAKINWRG 225
Query: 209 GWSNADKALTTFINGPLIEYSKNRRKADSATTSF------LSPHLHFGEVSVRK----VF 258
G + A L + + + + A + +S HL FG +SVR+ V
Sbjct: 226 GETQALLLLDERLKVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVH 285
Query: 259 HLVRIKQVSWANEG-NKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFS- 316
L + Q+ G G + + REY MS N+P +++R + G+ S
Sbjct: 286 DLFKNVQLRACVRGVQMTGGAHIT---GQLIWREYFYTMSVNNP-NYDR-MEGNDICLSI 340
Query: 317 -WVV-DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK-VLQLPWRWG 373
W +E ++WR G+TG+PL+D MR+L A GWLH +R V++F + L W G
Sbjct: 341 PWAKPNENLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEHG 400
Query: 374 MKYFWDTLLDADLESDALGWQYISGTIPDGRAFDR------IDNPQFEGYKFDPNGEYVR 427
+++F LLDAD A W ++S + AF+R + P + DP+G Y++
Sbjct: 401 LQHFLKYLLDADWSVCAGNWMWVSSS-----AFERLLDSSLVTCPVALAKRLDPDGTYIK 455
Query: 428 RWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476
+++PEL +P E++H PW + +G +YP I+ + A R
Sbjct: 456 QYVPELMNVPKEFVHEPWRMSAEQQEQYECLIGVHYPERIIDLSMAVKR 504
>sp|B0WRR9|CRY1_CULQU Cryptochrome-1 OS=Culex quinquefasciatus GN=cry PE=3 SV=1
Length = 499
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 131/255 (51%), Gaps = 23/255 (9%)
Query: 238 ATTSFLSPHLHFGEVSVRKVFHLVR--IKQVSWANEGNKAGDESVNLFLKSIGLREYSRY 295
A S +S L FG +SVR + V +V N+ G + + REY
Sbjct: 214 APPSSMSAALRFGCLSVRMFYWCVHDLFARVQANNQLKHPGGHHIT---GQLIWREYFYT 270
Query: 296 MSFNHPY---SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHD 352
MS ++P+ P+ ++ ++ + W++GRTG+PL+DA MR+L A GWLH
Sbjct: 271 MSVHNPHYAVMELNPICLNIPWYE--AKDDSLDRWKEGRTGFPLIDAAMRQLMAEGWLHH 328
Query: 353 RIRVVVSSFFVKV-LQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRI-- 409
+R + ++F + L + W G+++F LLDAD A W ++S + AF+++
Sbjct: 329 ILRNITATFLTRGGLWISWEAGVQHFLKYLLDADWSVCAGNWMWVSSS-----AFEKLLD 383
Query: 410 ----DNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPF 465
+P + DP GEYV+R+LPEL + P ++H PW AP + + G +G +YP
Sbjct: 384 SSSCTSPVALARRLDPKGEYVKRYLPELEKFPALYVHEPWKAPPELQEQYGCVIGKDYPA 443
Query: 466 PIVRI-DAAKCRLDE 479
P+V + + KC ++
Sbjct: 444 PMVNLAEVNKCNANK 458
>sp|Q75WS4|CRYD_XENLA Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE=2 SV=1
Length = 523
Score = 125 bits (315), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 138/518 (26%), Positives = 222/518 (42%), Gaps = 67/518 (12%)
Query: 8 IVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPEEE-GPYY-------PGRVSRWWLKH 58
I R DLR+ DN L R A ++ ++ + P G +Y P R+ +L
Sbjct: 9 ICLLRNDLRLHDNEVLHWAHRNADQIVPLYCFDPRHYVGTHYFNFPKTGPHRLK--FLLE 66
Query: 59 SLSHLDSSLRSLGTSLVTKRST--DSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAK 116
S+ L +L+ G++L+ +R + + L++ + A L + + + K
Sbjct: 67 SVRDLRITLKKKGSNLLLRRGKPEEVIEDLVKQLGNVSAVTLHEEATKEETDV--ESAVK 124
Query: 117 EALTAQGIAVRSFNADLLYEPWDVN------------------DAQGQPFATFAAFWEKC 158
+A T GI ++F LY D+ + QG+ TF
Sbjct: 125 QACTRLGIKYQTFWGSTLYHREDLPFRHISSLPDVYTQFRKAVETQGKVRPTF------- 177
Query: 159 LSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALT 218
MP D PL P + G + PS D+ + ++ A S G S A + L
Sbjct: 178 -QMP-DKLKPL--PSGLEEGSV---PSHEDF--DQQDPLTDPRTAFPCSGGESQALQRLE 228
Query: 219 TFI-NGPLIEYSKNRRKA----DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGN 273
+ L+ K+ R D +T +P L G VS R ++ + E
Sbjct: 229 HYFWETNLVASYKDTRNGLIGLDYSTK--FAPWLALGCVSPRYIYEQIG------KYEKE 280
Query: 274 KAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHL--KFFSWVVDEGYFKAWRQGR 331
+ ++S + + R+Y R+++ Y L L K W D F AW++GR
Sbjct: 281 RTANQSTYWVIFELLWRDYFRFVALK--YGRRIFFLRGLQDKDIPWKRDPKLFDAWKEGR 338
Query: 332 TGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDAL 391
TG P VDA MREL TG++ +R R V+SF K L + WR G ++F L+D D+ S+
Sbjct: 339 TGVPFVDANMRELAMTGFMSNRGRQNVASFLTKDLGIDWRMGAEWFEYLLVDYDVCSNYG 398
Query: 392 GWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESV 451
W Y +G D R +R N +G +D G+Y+R W+PEL ++ H PW +
Sbjct: 399 NWLYSAGIGNDPRE-NRKFNMIKQGLDYDSGGDYIRLWVPELQQIKGGDAHTPWALSNAS 457
Query: 452 LQAAGIELGSNYPFPIVRIDAAKCRLDEALSEMWQQEA 489
L A + LG YP+PIV +++ + W++ A
Sbjct: 458 LAHANLSLGETYPYPIVMAPEWSRHINQKPAGSWEKSA 495
>sp|Q38JU2|CRYD_SOLLC Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum
lycopersicum GN=CRYD PE=3 SV=2
Length = 577
Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 130/484 (26%), Positives = 204/484 (42%), Gaps = 75/484 (15%)
Query: 7 SIVWFRRDLRVEDNPALA-AGVRAGAVIAVFIWAPEEEGPYY------PGRVSRWWLKHS 59
+IVWFR DLRV DN AL A V + A++ V+ P G + G + ++
Sbjct: 80 AIVWFRNDLRVLDNEALLRAWVSSEAILPVYCVDPRLFGTTHYFGMPKTGALRAQFIIEC 139
Query: 60 LSHLDSSLRSLGTSLVTK--RSTDSVSSLLEVVKA-------------TGATQLFFNHLY 104
L+ L +L G L+ + + D V SL + KA ++ +L
Sbjct: 140 LNDLKRNLVKRGLDLLIQHGKPEDIVPSLAKAYKAHTVYAHKETCSEEVKVEKMVTRNLQ 199
Query: 105 DPLSLVRDHRAKEALTAQGIAVRSFNADLLYE----PWDVND-----AQGQPFATFAAFW 155
+S + + + +Y P+D Q + + +
Sbjct: 200 KLVSPSSGGIGNDPGSGNTTKLELVWGSTMYHIDDLPFDCESLPDVYTQFRKSVEYKSKV 259
Query: 156 EKCLSMPFDPDAPLLPPKRINSGDMSRCP--SDTLVFEDESEKGSNALLARAWSPGWSNA 213
C +P PP + GD P S+ + +++ KG N + + + G
Sbjct: 260 RNCTKLP----TSFGPPPEV--GDWGHVPQVSELGLQQEKVSKGMNFVGGESAALG---- 309
Query: 214 DKALTTFINGPLIEYSKNRRK----ADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWA 269
+ F L++ K R AD +T SP L G +S R ++ V+
Sbjct: 310 -RVHDYFWKKDLLKVYKETRNGMLGADYSTK--FSPWLASGSLSPRFIYEEVK------R 360
Query: 270 NEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKF---------FSWVVD 320
E + ++S L + R+Y R++S L +L F +W D
Sbjct: 361 YEKERLSNDSTYWVLFELIWRDYFRFLSIK---------LANLLFQAGGPQKVNINWSQD 411
Query: 321 EGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDT 380
+ F AWR+G+TGYPL+DA M+EL ATG++ +R R +V SF V+ + + WR G ++F
Sbjct: 412 QTMFDAWRRGQTGYPLIDANMKELAATGYMSNRGRQIVCSFLVRDMGIDWRMGAEWFETC 471
Query: 381 LLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEW 440
LLD D S+ W Y +G D R DR + + +DP GE+V WLPEL LP E
Sbjct: 472 LLDYDPCSNYGNWTYGAGVGNDPRE-DRYFSIPKQAQNYDPEGEFVAYWLPELRALPREK 530
Query: 441 IHHP 444
H P
Sbjct: 531 RHSP 534
>sp|Q84KJ5|CRYD_ARATH Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis
thaliana GN=CRYD PE=1 SV=2
Length = 569
Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 130/478 (27%), Positives = 195/478 (40%), Gaps = 69/478 (14%)
Query: 3 GRGCSIVWFRRDLRVEDNPAL-AAGVRAGAVIAVFIWAPEEEGPYY------PGRVSRWW 55
G+G +I+WFR DLRV DN AL A + ++ V+ P + G + +
Sbjct: 82 GKGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGF 141
Query: 56 LKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRA 115
L L L +L G +L+ RS L + K GA +F + + +
Sbjct: 142 LMECLVDLRKNLMKRGLNLLI-RSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLV 200
Query: 116 KEALTAQGIAVR---------SFNADLLYEPWDVNDAQGQPFATFAAFWEKC-------- 158
+ L G + + DL ++ +D+ D Q + A KC
Sbjct: 201 NQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVEA---KCSIRSSTRI 257
Query: 159 -LSMPFDP------DAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWS 211
LS+ P D P L + +++R + F G + W
Sbjct: 258 PLSLGPTPSVDDWGDVPTLEKLGVEPQEVTR----GMRFVGGESAGVGRVFEYFWKKDLL 313
Query: 212 NADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANE 271
K + GP +YS SP L FG +S R ++ V+ E
Sbjct: 314 KVYKETRNGMLGP--DYSTK-----------FSPWLAFGCISPRFIYEEVQ------RYE 354
Query: 272 GNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKF-----FSWVVDEGYFKA 326
+ + S L + R+Y R++S S L HL W D+ F++
Sbjct: 355 KERVANNSTYWVLFELIWRDYFRFLSIKCGNS-----LFHLGGPRNVQGKWSQDQKLFES 409
Query: 327 WRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADL 386
WR +TGYPL+DA M+EL TG++ +R R +V SF V+ + L WR G ++F LLD D
Sbjct: 410 WRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDP 469
Query: 387 ESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHP 444
S+ W Y +G D R DR + + +DP GEYV WL +L RLP E H P
Sbjct: 470 CSNYGNWTYGAGVGNDPRE-DRYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWP 526
>sp|P05066|PHR_YEAST Deoxyribodipyrimidine photo-lyase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PHR1 PE=1
SV=1
Length = 565
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 119/474 (25%), Positives = 196/474 (41%), Gaps = 71/474 (14%)
Query: 10 WFRRDLRVEDNPALAAGVR----------AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHS 59
WFR DLR+ DN L V + AV++ ++ + ++ +
Sbjct: 80 WFRNDLRLYDNVGLYKSVALFQQLRQKNAKAKLYAVYVINEDDWRAHMDSGWKLMFIMGA 139
Query: 60 LSHLDSSLRSLGTSLV-----TKRSTDSVSS---------LLEVVKATGATQLFFNHLYD 105
L +L SL L L+ T +ST S S + V TG T + N Y
Sbjct: 140 LKNLQQSLAELHIPLLLWEFHTPKSTLSNSKEFVEFFKEKCMNVSSGTG-TIITANIEYQ 198
Query: 106 PLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEK-------- 157
L RD R E + ++ ++ + P + +G ++ F +++K
Sbjct: 199 TDELYRDIRLLEN-EDHRLQLKYYHDSCIVAPGLITTDRGTNYSVFTPWYKKWVLYVNNY 257
Query: 158 -------CLSMPFDP----DAPLLPPKRINSGD--MSRCPSDTLVFEDESEKGSNALLAR 204
C +P + L P + + D + P D SE+ A L+R
Sbjct: 258 KKSTSEICHLHIIEPLKYNETFELKPFQYSLPDEFLQYIPKSKWCLPDVSEE---AALSR 314
Query: 205 AWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKV----FHL 260
L F+ +Y+ + TS LS ++ G +S R + F
Sbjct: 315 ------------LKDFLGTKSSKYNNEKDMLYLGGTSGLSVYITTGRISTRLIVNQAFQS 362
Query: 261 VRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY-SHERPLLGHLKFFSWVV 319
+ +S A + N S F+K + R++ R+ N PY S P W
Sbjct: 363 CNGQIMSKALKDN----SSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWEN 418
Query: 320 DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWD 379
+ F+ W G TG P+VDA MR+L TG++++R R++ +SF K L + WRWG ++F
Sbjct: 419 NPVAFEKWCTGNTGIPIVDAIMRKLLYTGYINNRSRMITASFLSKNLLIDWRWGERWFMK 478
Query: 380 TLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPEL 433
L+D D S+ GW + S T D + + R+ N + K+DP +V++W+PEL
Sbjct: 479 HLIDGDSSSNVGGWGFCSSTGIDAQPYFRVFNMDIQAKKYDPQMIFVKQWVPEL 532
>sp|Q5IFN2|CRYD_OSTTA Cryptochrome DASH, chloroplastic/mitochondrial OS=Ostreococcus
tauri GN=Ot01g06320 PE=3 SV=1
Length = 546
Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 132/512 (25%), Positives = 209/512 (40%), Gaps = 72/512 (14%)
Query: 3 GRGCSIVWFRRDLRVEDNPALAAGVRAGA------VIAVFIW-----APEEEGPYYPGRV 51
GR ++WFR DLR+ DN +A + V+ V+++ P + G G
Sbjct: 2 GRTRVVIWFRNDLRLLDNACVARAATLASESSDVEVVPVYVFDETYFKPSKRGLARFGAG 61
Query: 52 SRWWLKHSLSHLDSSLRSLGTSLVTK--RSTDSVSSLLEVVKATGA---------TQLFF 100
+ + L +SLR+LG+ L+ + +S D ++ L TGA T++
Sbjct: 62 RGKFTLECVGDLKTSLRALGSDLLVRCGKSRDVIAEL----TLTGANDRTIILTQTEVTS 117
Query: 101 NHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYE----PWDVNDAQGQPFATFAAFWE 156
+++ R R + A + LY P+DV F F
Sbjct: 118 EETEMDVAVERATRERARGGAASATMERHWGSTLYHIDDVPFDVTSGLSDLPDVFTPFRN 177
Query: 157 KCLSMPFDPDAPLLP--------PKRINSGDMSRCPSD-----TLVFEDESEKGSNALLA 203
K S D P P + + PSD + + D ++ + L
Sbjct: 178 KVESKCKVRDVIPAPTANELGHVPASVEGFEWMPKPSDLPFASSEIAMDCDKRIKDCLDE 237
Query: 204 RA---WSPGWSNADKALTTFI--NGPLIEYSKNRRKADSATTSF-LSPHLHFGEVSVRKV 257
R+ + G SNA + ++ + L Y + R S L+P L G VS R V
Sbjct: 238 RSVLDFKGGESNALARVKYYLWESDRLATYFETRNGMLGGDYSTKLAPWLALGCVSPRHV 297
Query: 258 FHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHL----- 312
+R E + ++S + + R++ ++ + H + HL
Sbjct: 298 VSEIR------RYESERVENKSTYWVIFELIWRDFFKFFALKHGNK-----IFHLDGTAG 346
Query: 313 KFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRW 372
+ SW DE KAW+ G TGYPL+DA MREL ATG++ +R R V+S+ + WR
Sbjct: 347 RRASWKRDEKILKAWKTGTTGYPLIDANMRELAATGFMSNRGRQNVASWLALDAGIDWRH 406
Query: 373 GMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPE 432
G +F LLD D S+ W +G G +R N + +DP GEY++ W+ E
Sbjct: 407 GADWFEHHLLDYDTASNWGNWCAAAGMT--GGRINRF-NIAKQTKDYDPAGEYIKTWVKE 463
Query: 433 LARLPTEWIHHPWNAPESVLQAAGIELGSNYP 464
LA +P +I P AP + +G NYP
Sbjct: 464 LAEVPAAYIADPNQAPRELRD----RIGLNYP 491
>sp|Q651U1|CRYD_ORYSJ Cryptochrome DASH, chloroplastic/mitochondrial OS=Oryza sativa
subsp. japonica GN=CRYD PE=2 SV=1
Length = 582
Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 106/204 (51%), Gaps = 11/204 (5%)
Query: 243 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY 302
SP L G +S R + V+ E + ++S L + R+Y R++S Y
Sbjct: 350 FSPWLASGSLSPRYICEEVK------RYEKQRIANDSTYWVLFELIWRDYFRFISAK--Y 401
Query: 303 SHERPLLGHLKFF--SWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS 360
+ LG + W D+ F++WR GRTGYPL+DA M+EL ATG++ +R R +V S
Sbjct: 402 GNSIFHLGGPRNVESKWSQDQALFESWRDGRTGYPLIDANMKELLATGFMSNRGRQIVCS 461
Query: 361 FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFD 420
F V+ + + WR G ++F LLD D S+ W Y +G D R DR + + +D
Sbjct: 462 FLVRDMGIDWRMGAEWFETCLLDYDPASNYGNWTYGAGVGNDPRE-DRYFSIPKQAKTYD 520
Query: 421 PNGEYVRRWLPELARLPTEWIHHP 444
P+GEYV WLPEL + E + P
Sbjct: 521 PDGEYVAYWLPELRSIAKERRNFP 544
Score = 35.4 bits (80), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 18/119 (15%)
Query: 3 GRGCSIVWFRRDLRVEDNPALA-AGVRAGAVIAVFIWAPEEEGP---YY----PGRVSRW 54
G G +IVWFR DLRV DN A+ A + AV+ V+ P Y+ G +
Sbjct: 82 GGGVAIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRAQ 141
Query: 55 WLKHSLSHLDSSLRSLGTSLVTK--RSTDSVSSLLEVV--------KATGATQLFFNHL 103
+L L L +L G L+ + + D + S+ + V K T + +L HL
Sbjct: 142 FLIECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHKETCSEELLVEHL 200
>sp|Q5QXE0|CRYD_IDILO Cryptochrome DASH OS=Idiomarina loihiensis (strain ATCC BAA-735 /
DSM 15497 / L2-TR) GN=cry PE=3 SV=1
Length = 449
Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 132/468 (28%), Positives = 200/468 (42%), Gaps = 68/468 (14%)
Query: 1 MSGRGCSIVWFRRDLRVEDNPAL-AAGVRAGAVIAVFIWAPEEE--GPY---YPGRVSRW 54
M+ + FR DLRVEDN AL A R+ +I F + P + G Y G+
Sbjct: 11 MADYRLGLFVFRNDLRVEDNLALYEAAQRSETLICCFCFNPTQNKYGHYGIPAMGKHRFT 70
Query: 55 WLKHSLSHLDSSLRSLGTSLVTKRST-DSVSSLLEVVKATGATQLFFNH---LYDPLSLV 110
+L+ SL L + L G L+ T D + L E++ +F + Y+ L L
Sbjct: 71 FLQQSLKQLRTELEMRGQKLIVLTGTFDRI--LTELISERQVDAIFLSQHQGYYERLQL- 127
Query: 111 RDHRAKEALTAQGIAVRSF----NADLLYE---PWDVNDAQGQPFATFAAFWEKC--LSM 161
L Q F N L E P+++ D TF+ F +K LS
Sbjct: 128 -------GLLQQRFPFLPFHETPNNTLFSEQELPFELADLP----ETFSQFRKKVEPLSR 176
Query: 162 PFDPD-APLLP--PKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALT 218
F LP PK I+ + L D+ E G A L LT
Sbjct: 177 NFSVQPVNALPSLPKNISYPGFKAETLNELA-SDDFEGGERAALTH------------LT 223
Query: 219 TFINGPLIEYSKNRRKA--DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAG 276
++ +G K R A D ++++ SP L G +SVR++ +R A E
Sbjct: 224 SYFSGESAGTYKQTRNALDDFSSSTKFSPWLAQGCLSVRQIMAALR------AYETEFGE 277
Query: 277 DESVNLFLKSIGLREYSRYMSFNH-----PYSHERPLLGHLKFFSWVVDEGYFKAWRQGR 331
+ES + REY + + H +S F+S F+ W G
Sbjct: 278 NESSYWISFELLWREYFFWYALKHGKRLFAFSGLSGKSPKTSFYS-----ERFQKWCSGN 332
Query: 332 TGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDAL 391
T YP+V+A M++L ATG++ +R R +V+S FV L L WR+G YF L+D D+ S+
Sbjct: 333 TPYPIVNACMKQLNATGYMSNRGRQLVASCFVHELSLDWRYGAAYFEQQLIDYDVSSNWG 392
Query: 392 GWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTE 439
WQY++G D R R N + + ++DP+ E++ RW +L+ P +
Sbjct: 393 NWQYLAGVGADPRG-HRQFNLEKQTERYDPDNEFIERWAGDLSGQPID 439
>sp|Q7SI68|CRYD_NEUCR Putative cryptochrome DASH, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=B22I21.260 PE=3 SV=1
Length = 745
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 77/130 (59%), Gaps = 1/130 (0%)
Query: 330 GRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESD 389
G TG L+DA REL TG+ +R R V+SF K L++ WR+G +++ L+D D+ S+
Sbjct: 421 GTTGMGLIDASQRELIHTGYTSNRTRQNVASFLAKHLEIDWRYGAEWYEMLLVDYDVSSN 480
Query: 390 ALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPT-EWIHHPWNAP 448
WQY++G D R RI NP + + +D +G YVR W+PE+A+ E + W A
Sbjct: 481 WANWQYVAGVGNDPRGAARIFNPVKQAFDYDKDGTYVRTWVPEVAKFENLENVFQAWTAS 540
Query: 449 ESVLQAAGIE 458
+ L+ AG+E
Sbjct: 541 KEDLKTAGLE 550
>sp|Q87JP5|CRYD_VIBPA Cryptochrome DASH OS=Vibrio parahaemolyticus serotype O3:K6 (strain
RIMD 2210633) GN=cry PE=3 SV=1
Length = 445
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 110/448 (24%), Positives = 180/448 (40%), Gaps = 55/448 (12%)
Query: 4 RGCSIVWFRRDLRVEDNPALAAGVRAGAVI--AVFIWAPEEEGPYYP--------GRVSR 53
+ + WF DLR+ DN L V A + + V ++ P+ GR +
Sbjct: 3 KKIGLYWFTFDLRLHDNSLL---VDASSFLDELVCLYCRPSVTPFLHHFAQEVTLGRARQ 59
Query: 54 WWLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDH 113
++ SL L+ +L LG L T +L ++ T L+ + + H
Sbjct: 60 KFIDASLCELNDALGQLGQRLWT-LDLPPYQALKYAIQYLSVTHLYSDAMAGSDEQSILH 118
Query: 114 RAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFA------TFAAFWEKCLSMPFDPDA 167
+ ++ I S + + D PF TF F KC+ D
Sbjct: 119 KLQDEYPHLVIVQHSVRS--------LFDESKLPFTLPDLPETFTQF-RKCVE-GIDIAH 168
Query: 168 PLLPPKRINSG-DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLI 226
P+ P R+ ++ P+ + + DES S WS F +G
Sbjct: 169 PIDAPSRLPPMPKGAQLPTLSSFYFDESALFSGG--------EWSGLAHCRRYFFSGLAS 220
Query: 227 EYSKNRRKADS-ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLK 285
Y + R D A ++ SP L G VS R + +++ E + ++S
Sbjct: 221 SYKETRNGLDGMAYSTKFSPWLALGCVSPRMIHAMLK------QYEQTQGANDSTYWIYF 274
Query: 286 SIGLREYSRYMSFNHPYSHERPLLGHLK----FFSWVVDEGYFKAWRQGRTGYPLVDAGM 341
+ REY + + Y G ++ S+ F+ W+ G T YP+V+A M
Sbjct: 275 ELLWREY--FYWYARCYQQRLFRFGGIRNQPPLTSFYAHR--FQQWKNGTTPYPIVNACM 330
Query: 342 RELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIP 401
+L TG++ +R R +V+S V L L WR+G YF L+D D+ S+ WQY++G
Sbjct: 331 HQLNHTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLIDYDVGSNWGNWQYLAGVGA 390
Query: 402 DGRAFDRIDNPQFEGYKFDPNGEYVRRW 429
D R R N + + +DPN E++ RW
Sbjct: 391 DPRG-SRQFNLEKQTQMYDPNHEFIERW 417
>sp|Q9KR33|CRYD_VIBCH Cryptochrome DASH OS=Vibrio cholerae serotype O1 (strain ATCC 39315
/ El Tor Inaba N16961) GN=cry1 PE=1 SV=1
Length = 461
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 117/452 (25%), Positives = 193/452 (42%), Gaps = 63/452 (13%)
Query: 4 RGCSIVWFRRDLRVEDNPAL-AAGVRAGAVIAVFIWAPEEEGPYYP--------GRVSRW 54
+ + WF DLRV DNP L A + +I ++ + P+ G +
Sbjct: 3 KKIGLYWFTNDLRVNDNPLLEQASQQVDRLICLYCYP--SITPFLARYAQQTQWGEAKKR 60
Query: 55 WLKHSLSHLDSSLRSLGTSL-VTKR-STDSVSSLLEVVKATGATQLFFNHLYDPLSLVRD 112
+L +L+ LD SL +LG L VT ++ LL V+ T + ++ R
Sbjct: 61 FLNQTLADLDHSLSTLGQKLWVTPLLPYQALRHLLTQVEITDIYVDAVAGSDERQAIARI 120
Query: 113 HRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFDPDAPL--- 169
H+ ++ A+ S LL EP + P +TF F ++ ++ AP+
Sbjct: 121 HQDFSSVHIHQQALHS----LLSEPQLPFALEALP-STFTQFRKQVETISLS--APMGYP 173
Query: 170 --LPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIE 227
LPP I G L D + +++ G ++ ++ +
Sbjct: 174 HVLPP--IEQGWQ-------LPLMDIVTEPNHSAFVGGEQAGLTHCQNYFSSLLPS---R 221
Query: 228 YSKNRRKADSATTSF-LSPHLHFGEVSVRKVFHLV-RIKQVSWANEGNKAGDESVNLFLK 285
Y + R D S SP L G VS + ++ ++ R + V AN D + +F +
Sbjct: 222 YKETRNGLDGMDYSTKFSPWLALGAVSPKTIYAMLQRYEAVHGAN------DSTYWIFFE 275
Query: 286 SIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEG--------YFKAWRQGRTGYPLV 337
+ REY Y + R L FS + ++ F W+ G T +P+V
Sbjct: 276 LL-WREYF--------YWYARRYGAKLFRFSGIGEKKPLTSFYAQRFLQWKHGETPFPIV 326
Query: 338 DAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYIS 397
+A MR+L TG++ +R R +V+S V L L WR+G YF L+D D+ S+ WQY++
Sbjct: 327 NACMRQLNQTGYMSNRGRQLVASCLVHELGLDWRYGAAYFETQLVDYDVGSNWGNWQYLA 386
Query: 398 GTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRW 429
G D R R N + + + +DP GE+V +W
Sbjct: 387 GVGADPRG-SRQFNLEKQAHTYDPKGEFVAKW 417
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 265,459,907
Number of Sequences: 539616
Number of extensions: 11560677
Number of successful extensions: 29062
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 28835
Number of HSP's gapped (non-prelim): 132
length of query: 681
length of database: 191,569,459
effective HSP length: 124
effective length of query: 557
effective length of database: 124,657,075
effective search space: 69433990775
effective search space used: 69433990775
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)