Query 005723
Match_columns 681
No_of_seqs 263 out of 1677
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 05:39:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005723.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005723hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u3d_A Cryptochrome 1 apoprote 100.0 1E-126 4E-131 1078.7 45.0 499 4-502 11-509 (509)
2 3fy4_A 6-4 photolyase; DNA rep 100.0 1E-120 5E-125 1028.2 44.6 476 1-488 1-500 (537)
3 3tvs_A Cryptochrome-1; circadi 100.0 3E-117 9E-122 1003.4 35.6 473 4-484 3-511 (538)
4 1np7_A DNA photolyase; protein 100.0 3E-116 1E-120 988.7 42.1 466 2-481 3-483 (489)
5 2wq7_A RE11660P; lyase-DNA com 100.0 9E-116 3E-120 995.3 43.9 469 5-488 29-524 (543)
6 1dnp_A DNA photolyase; DNA rep 100.0 1E-116 4E-121 986.3 31.1 458 6-485 2-468 (471)
7 1owl_A Photolyase, deoxyribodi 100.0 6E-115 2E-119 977.0 40.6 458 5-486 3-473 (484)
8 2e0i_A 432AA long hypothetical 100.0 4E-113 1E-117 948.9 33.7 424 7-485 3-429 (440)
9 2j4d_A Cryptochrome 3, cryptoc 100.0 4E-111 1E-115 953.7 36.8 459 4-482 39-515 (525)
10 2j07_A Deoxyribodipyrimidine p 100.0 3E-108 9E-113 907.1 37.7 417 5-485 2-418 (420)
11 3umv_A Deoxyribodipyrimidine p 100.0 9.5E-91 3.2E-95 780.4 23.5 414 3-442 36-495 (506)
12 2xry_A Deoxyribodipyrimidine p 100.0 1.2E-86 4.1E-91 747.6 23.4 401 5-431 37-481 (482)
13 3zxs_A Cryptochrome B, rscryb; 100.0 2.5E-68 8.5E-73 592.0 20.0 424 6-473 16-480 (522)
14 3dlo_A Universal stress protei 73.8 29 0.001 31.2 11.4 112 14-129 32-154 (155)
15 3tnj_A Universal stress protei 70.1 45 0.0015 29.2 11.6 127 1-130 3-146 (150)
16 3s3t_A Nucleotide-binding prot 67.0 25 0.00084 30.8 9.0 115 14-129 13-145 (146)
17 3fdx_A Putative filament prote 64.6 46 0.0016 28.8 10.4 115 14-129 9-142 (143)
18 3hgm_A Universal stress protei 63.4 31 0.001 30.1 8.9 88 14-102 10-118 (147)
19 3rjz_A N-type ATP pyrophosphat 63.3 19 0.00065 35.9 8.1 98 21-128 19-121 (237)
20 3fg9_A Protein of universal st 57.7 88 0.003 27.5 11.1 110 20-129 31-155 (156)
21 2dum_A Hypothetical protein PH 56.7 54 0.0018 29.5 9.6 116 14-130 13-155 (170)
22 3olq_A Universal stress protei 48.7 2.1E+02 0.0072 28.3 15.3 103 30-133 194-307 (319)
23 3loq_A Universal stress protei 48.4 1.6E+02 0.0053 29.1 12.3 99 18-130 182-289 (294)
24 2lnd_A De novo designed protei 44.4 35 0.0012 28.0 5.2 64 57-123 37-103 (112)
25 3mt0_A Uncharacterized protein 43.9 1.7E+02 0.0059 28.7 11.8 115 1-130 4-127 (290)
26 1jmv_A USPA, universal stress 41.4 1.3E+02 0.0046 25.6 9.4 115 14-130 10-137 (141)
27 3fvv_A Uncharacterized protein 39.9 85 0.0029 29.4 8.4 66 57-123 94-172 (232)
28 1sur_A PAPS reductase; assimil 38.9 94 0.0032 29.6 8.5 73 58-132 31-106 (215)
29 3lwz_A 3-dehydroquinate dehydr 37.3 1.1E+02 0.0038 28.2 8.0 77 59-140 33-116 (153)
30 3kip_A 3-dehydroquinase, type 37.1 1.7E+02 0.0057 27.4 9.2 68 68-140 55-126 (167)
31 3l49_A ABC sugar (ribose) tran 36.9 1.8E+02 0.006 28.2 10.5 73 55-132 19-95 (291)
32 1ym0_B Fibrinotic enzyme compo 36.8 13 0.00045 23.2 1.2 14 634-647 2-19 (27)
33 3i8o_A KH domain-containing pr 35.0 1.8E+02 0.0063 26.4 9.2 89 31-131 32-132 (142)
34 2uyg_A 3-dehydroquinate dehydr 34.5 2.7E+02 0.0092 25.6 10.0 74 62-140 32-109 (149)
35 3n8k_A 3-dehydroquinate dehydr 33.7 1E+02 0.0036 28.9 7.3 77 59-140 54-137 (172)
36 2z08_A Universal stress protei 33.5 1.9E+02 0.0066 24.5 9.0 59 70-129 73-136 (137)
37 2gvs_A Chemosensory protein CS 32.4 11 0.00037 33.0 0.4 22 416-437 87-108 (109)
38 3mt0_A Uncharacterized protein 32.4 2.1E+02 0.0073 28.0 10.3 110 20-130 155-275 (290)
39 2gm3_A Unknown protein; AT3G01 31.3 1.5E+02 0.0051 26.6 8.3 73 57-130 86-162 (175)
40 1vp8_A Hypothetical protein AF 31.0 61 0.0021 31.2 5.3 76 48-128 23-103 (201)
41 3jy6_A Transcriptional regulat 30.0 2.2E+02 0.0075 27.4 9.8 71 55-132 21-94 (276)
42 3loq_A Universal stress protei 29.8 2.8E+02 0.0094 27.2 10.6 117 14-132 30-163 (294)
43 1mjh_A Protein (ATP-binding do 29.7 84 0.0029 27.8 6.1 116 14-130 13-158 (162)
44 1tq8_A Hypothetical protein RV 29.3 1.1E+02 0.0037 27.6 6.8 72 58-130 81-157 (163)
45 3h75_A Periplasmic sugar-bindi 28.3 1.6E+02 0.0054 29.7 8.6 73 55-132 18-95 (350)
46 3olq_A Universal stress protei 28.2 4.3E+02 0.015 25.9 13.2 130 1-132 4-151 (319)
47 1pq4_A Periplasmic binding pro 28.2 1.4E+02 0.0047 30.3 8.0 42 60-101 226-267 (291)
48 1gqo_A Dehydroquinase; dehydra 27.1 3.6E+02 0.012 24.5 9.8 71 65-140 36-109 (143)
49 2c4w_A 3-dehydroquinate dehydr 26.5 3.5E+02 0.012 25.4 9.6 68 69-140 51-121 (176)
50 1zun_A Sulfate adenylyltransfe 26.4 2E+02 0.0068 29.6 9.0 75 55-131 31-111 (325)
51 3lgb_A DNA primase large subun 26.0 89 0.003 30.0 5.6 64 335-399 20-87 (194)
52 1h05_A 3-dehydroquinate dehydr 24.9 3.3E+02 0.011 24.9 8.8 73 63-140 36-111 (146)
53 3qk7_A Transcriptional regulat 24.9 2.5E+02 0.0086 27.3 9.2 72 55-132 24-97 (294)
54 3l6u_A ABC-type sugar transpor 24.9 2E+02 0.0069 27.8 8.4 73 55-132 22-98 (293)
55 3u80_A 3-dehydroquinate dehydr 24.8 2.1E+02 0.007 26.4 7.5 78 58-137 29-113 (151)
56 2iel_A Hypothetical protein TT 24.3 2.4E+02 0.0082 25.5 7.7 70 57-129 57-133 (138)
57 3uug_A Multiple sugar-binding 23.6 2.7E+02 0.0093 27.4 9.3 72 55-131 17-92 (330)
58 3egc_A Putative ribose operon 23.2 1.7E+02 0.0057 28.5 7.4 71 55-131 22-95 (291)
59 8abp_A L-arabinose-binding pro 23.1 2.7E+02 0.0091 27.0 9.0 72 55-131 16-90 (306)
60 3nkl_A UDP-D-quinovosamine 4-d 22.7 3E+02 0.01 23.6 8.3 46 84-131 55-100 (141)
61 3p6l_A Sugar phosphate isomera 21.4 2.6E+02 0.0089 26.8 8.4 66 58-128 63-133 (262)
62 1uqr_A 3-dehydroquinate dehydr 21.2 4.4E+02 0.015 24.2 9.0 73 63-140 35-110 (154)
63 2nyt_A Probable C->U-editing e 20.5 1.1E+02 0.0036 29.4 5.0 72 55-129 69-145 (190)
64 3dbi_A Sugar-binding transcrip 20.2 4.7E+02 0.016 25.8 10.4 72 55-131 77-151 (338)
No 1
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=100.00 E-value=1e-126 Score=1078.73 Aligned_cols=499 Identities=88% Similarity=1.481 Sum_probs=431.3
Q ss_pred CCeEEEEEcCCCCCCCCHHHHHHHHcCCeEEEEEEcCCCCCCCCCchhhHHHHHHhHHHHHHHHHhCCCceEEEeCCChH
Q 005723 4 RGCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRSTDSV 83 (681)
Q Consensus 4 ~~~~LvWFRrDLRl~DN~AL~aA~~~~~vlpVfI~dP~~~~~~~~~r~~r~FL~esL~dL~~~L~~~G~~L~v~~~g~~~ 83 (681)
++++|||||||||++||+||.+|++.++|+||||+||.++..+..++.+++||++||++|+++|+++|++|++++.|++.
T Consensus 11 ~~~~l~WfrrDLRl~DN~aL~~A~~~~~v~pvfi~dp~~~~~~~~~~~~~~fl~~sL~~L~~~L~~~G~~L~v~~~g~~~ 90 (509)
T 1u3d_A 11 GGCSIVWFRRDLRVEDNPALAAAVRAGPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSLGTCLITKRSTDSV 90 (509)
T ss_dssp --CEEEEESSCCCSTTCHHHHHHHHHSCEEEEEEECGGGGTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSCHH
T ss_pred CCcEEEEECCCCccchhHHHHHHHhCCCEEEEEEECchhcccCCcchHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHH
Confidence 46789999999999999999999988899999999998876656678888899999999999999999999998656899
Q ss_pred HHHHHHHHHcCCCEEEEecccChhhHHHHHHHHHHHHhCCeEEEEecCCeeeCCcccccccCCcccchHHHHHHHHcCCC
Q 005723 84 SSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPF 163 (681)
Q Consensus 84 ~~L~~L~~~~~~~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~~g~~~~~f~~f~~~~~~~~~ 163 (681)
++|.+|+++++|++|++|++|+|+++.||++|+++|++.||+++++++++|++|+++.++.|++|++|++||+++++.++
T Consensus 91 ~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~g~~~~vftpf~r~~~~~~~ 170 (509)
T 1u3d_A 91 ASLLDVVKSTGASQIFFNHLYDPLSLVRDHRAKDVLTAQGIAVRSFNADLLYEPWEVTDELGRPFSMFAAFWERCLSMPY 170 (509)
T ss_dssp HHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGCCCSSSCCCSSHHHHHHHHHTCSS
T ss_pred HHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHHcCcEEEEECCCEEEcCCcccCCCCCCchhHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999988755
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCccccchhchhhhhcCCCCcCHHHHHHHHHHHhcCcCCcccccccCCCCCCCCCC
Q 005723 164 DPDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243 (681)
Q Consensus 164 ~p~~p~~~p~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~tS~L 243 (681)
.|..+.+.|..+++..+...+++++++.+.............|+|||++|+++|++|+++++.+|+++||.|..++||+|
T Consensus 171 ~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~~l~~Y~~~Rd~p~~~~tS~L 250 (509)
T 1u3d_A 171 DPESPLLPPKKIISGDVSKCVADPLVFEDDSEKGSNALLARAWSPGWSNGDKALTTFINGPLLEYSKNRRKADSATTSFL 250 (509)
T ss_dssp CCCCCCCCCSCCCBTTGGGSSCCCCCCCCHHHHHHHTTHHHHCCCSHHHHHHHHHHHHTTGGGGTTTTTTCSSSTTSCCC
T ss_pred CCCCCCCCccccCccccCCCChhHhCCCcccccchhhhccccCCCcHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCC
Confidence 44333444433322211112344555443211111111123489999999999999999999999999999999999999
Q ss_pred chhhhCCCCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccccCCCCcCchhH
Q 005723 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGY 323 (681)
Q Consensus 244 SPyL~fG~LSpReV~~~v~~~~~~~~~~~~~~~~~s~~~fl~eL~WREf~~~l~~~~p~~~~~~~~~~~~~~pW~~d~~~ 323 (681)
||||||||||||+|++++.+.+..+..++...+.++++.|++||+||||++++++++|.+.+.++.++++.+||..|++.
T Consensus 251 SPyL~~G~LSpR~v~~~~~~~~~~~~~~~~~~~~~s~~~fl~eL~WREf~~~~~~~~p~~~~~~~~~~~~~lpW~~d~~~ 330 (509)
T 1u3d_A 251 SPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENY 330 (509)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSSTTTTTSCSCCTTTTCCCCCCHHH
T ss_pred ChhhccCCCCHHHHHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHhCccccccchhhhhccCCCcCChHH
Confidence 99999999999999999976431111122222345789999999999999999999999888888888999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHHHHHHhhccCCCchHHHHHHHHhcccccCCCCccchhhhhcCCCCC
Q 005723 324 FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDG 403 (681)
Q Consensus 324 ~~aW~~G~TG~P~VDAaMRqL~~TGwmHnr~Rm~vAsfl~k~L~idWr~G~~~F~~~LlD~D~a~n~g~Wqw~aG~g~d~ 403 (681)
|++|++|+|||||||||||||++|||||||+||||||||||+|+||||+|++||+++|||||+++|+|||||+||+|+|+
T Consensus 331 ~~aW~~G~TG~P~VDAaMrqL~~tG~mHnr~Rm~vasfl~k~L~idWr~G~~~F~~~liD~D~a~n~g~wqw~ag~g~d~ 410 (509)
T 1u3d_A 331 FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDS 410 (509)
T ss_dssp HHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHTCSTTC
T ss_pred HHHHHcCCCCCHhHHHHHHHHHHhCCccHHHHHHHHHHHHHccCCCchHHHHHHHHHhccCCcccchHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCccccccccCCchhhHHhhchhccCCCCCcccCCCCCChhHHHHhCCccCCCCCCCCcCHHHHHHHHHHHHHH
Q 005723 404 RAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSE 483 (681)
Q Consensus 404 ~~~~RifNP~~q~~k~Dp~G~yIr~wvPeL~~~p~~~ih~pw~~~~~~~~~~g~~~~~~YP~Pivd~~~~~~~~~~~~~~ 483 (681)
+||||||||++|++||||+|+|||||||||+++|+++||+||+++..+|+++||.+|.+||.|||||+++|++++++|+.
T Consensus 411 ~py~RifNP~~Q~~kfDp~G~yIrrwvPEL~~~p~~~ih~Pw~~~~~~~~~~~~~~g~~YP~PiVd~~~~r~~a~~~~~~ 490 (509)
T 1u3d_A 411 REFDRIDNPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQ 490 (509)
T ss_dssp CCSSCCCCHHHHHHHHCTTSHHHHHHCGGGTTCCHHHHTCTTTSCHHHHHHHTCCBTTTBCCCSSCHHHHHHHHHHHHHH
T ss_pred CccccccCHHHHHHhcCCCchhHHHhCHHhhccccccccCcccCChHHHHHhccccCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCccc
Q 005723 484 MWQQEAASRAAIENGTEEG 502 (681)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~ 502 (681)
+++..++.+|+..+|.+||
T Consensus 491 ~~~~~~~~~~~~~~~~~~~ 509 (509)
T 1u3d_A 491 MWQLEAASRAAIENGSEEG 509 (509)
T ss_dssp HHHHHCC------------
T ss_pred HHhhHHHHHHHhhcCccCC
Confidence 9999999999999998875
No 2
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=100.00 E-value=1.3e-120 Score=1028.23 Aligned_cols=476 Identities=27% Similarity=0.437 Sum_probs=413.4
Q ss_pred CCCCCeEEEEEcCCCCCCCCHHHHHHHHcC-CeEEEEEEcCCCCCCC---------CCchhhHHHHHHhHHHHHHHHHhC
Q 005723 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPY---------YPGRVSRWWLKHSLSHLDSSLRSL 70 (681)
Q Consensus 1 m~~~~~~LvWFRrDLRl~DN~AL~aA~~~~-~vlpVfI~dP~~~~~~---------~~~r~~r~FL~esL~dL~~~L~~~ 70 (681)
|++++++||||||||||+||+||.+|++.+ +||||||+||.++... ..+..+.+||++||.+|+++|+++
T Consensus 1 ~~~~~~~lvWFRrDLRl~DN~AL~~A~~~~~~vlpvfi~dp~~~~~~~~~~~~g~~~~g~~r~~Fl~~sL~~L~~~L~~~ 80 (537)
T 3fy4_A 1 MATGSGSLIWFRKGLRVHDNPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKL 80 (537)
T ss_dssp ---CCEEEEEESSCCCSTTCHHHHHHHTTCSCEEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcEEEEeCCCcccchhHHHHHHHhcCCCEEEEEEeChhhhcccccccccccccCCHHHHHHHHHHHHHHHHHHHHc
Confidence 777889999999999999999999999875 8999999999865432 356677789999999999999999
Q ss_pred CCceEEEeCCChHHHHHHHHHHcCCCEEEEecccChhhHHHHHHHHHHHHhCCeEEEEecCCeeeCCcccccc-cCCccc
Q 005723 71 GTSLVTKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDA-QGQPFA 149 (681)
Q Consensus 71 G~~L~v~~~g~~~~~L~~L~~~~~~~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~-~g~~~~ 149 (681)
|++|+|++ |++.++|.+|+++++|++|++|++|+|++++||++|+++|++.||.+++|++++|++|++|.++ .|++|+
T Consensus 81 G~~L~v~~-G~~~~vl~~L~~~~~~~~V~~n~~~~p~~~~RD~~v~~~l~~~gI~~~~~~~~~L~~p~~v~~~~~~~~y~ 159 (537)
T 3fy4_A 81 GSRLLVFK-GEPGEVLVRCLQEWKVKRLCFEYDTDPYYQALDVKVKDYASSTGVEVFSPVSHTLFNPAHIIEKNGGKPPL 159 (537)
T ss_dssp TCCCEEEE-SCHHHHHHHHHTTSCEEEEEECCCCSHHHHHHHHHHHHHHHHTTCEEECCCCSSSSCHHHHHHHTSSSCCS
T ss_pred CCceEEEE-CCHHHHHHHHHHHcCCCEEEEeccccHHHHHHHHHHHHHHHHcCCeEEEecCCEEEchhhcccCCCCCCCC
Confidence 99999987 7999999999999999999999999999999999999999999999999999999999999754 567999
Q ss_pred chHHHHHHHHcCCCCCCCCCCCCCCCCC-CC------CCCCCCCCCCccccchhchhhhhcCCCCcCHHHHHHHHHHHhc
Q 005723 150 TFAAFWEKCLSMPFDPDAPLLPPKRINS-GD------MSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFIN 222 (681)
Q Consensus 150 ~f~~f~~~~~~~~~~p~~p~~~p~~~~~-~~------i~~~~~~~l~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~ 222 (681)
||++|++++....+.+.+....|..+++ .. .....++++++...... ....|+|||++|+++|++|+.
T Consensus 160 vftpf~k~~~~~~~~~~p~~~~p~~~~~~~~~~~~~~~~~p~l~~l~~~~~~~~-----~~~~~~~Ge~~A~~~L~~Fl~ 234 (537)
T 3fy4_A 160 SYQSFLKVAGEPSCAKSELVMSYSSLPPIGDIGNLGISEVPSLEELGYKDDEQA-----DWTPFRGGESEALKRLTKSIS 234 (537)
T ss_dssp SHHHHHHHHCCCTTTTCCCCCCCSCCCCCCCCCSSCCCCCCCTTTTTCCGGGSS-----CCCSCCCSHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHhhcCCcCCCCCccccCCCcccccccccccCCcHHhcCCCccccc-----ccCCCCccHHHHHHHHHHHHh
Confidence 9999999987764211111111211211 00 00112344554321100 012489999999999999998
Q ss_pred C--cCCcccccccCCC---CCCCCCCchhhhCCCCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHH
Q 005723 223 G--PLIEYSKNRRKAD---SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMS 297 (681)
Q Consensus 223 ~--~l~~Y~~~Rn~p~---~~~tS~LSPyL~fG~LSpReV~~~v~~~~~~~~~~~~~~~~~s~~~fl~eL~WREf~~~l~ 297 (681)
+ .+.+|++.||.|. .++||+|||||+|||||||+|++++.+.+. ......++++.|++||+|||||++++
T Consensus 235 ~~~~l~~Y~~~rd~p~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~~-----~~~~~~~~~~~f~~eL~WRef~~~~~ 309 (537)
T 3fy4_A 235 DKAWVANFEKPKGDPSAFLKPATTVMSPYLKFGCLSSRYFYQCLQNIYK-----DVKKHTSPPVSLLGQLLWREFFYTTA 309 (537)
T ss_dssp CHHHHHTCCGGGCCTTCCSSCSSCCCHHHHHTTSSCHHHHHHHHHHHHH-----TTSCCCCTTTSHHHHHHHHHHHHHHH
T ss_pred CchHHhhhcccccCccccCCCCCccCCHHHhCCCcCHHHHHHHHHHHHh-----hcccccccHHHHHHHHHHHHHHHHHH
Confidence 8 6999999999997 479999999999999999999999976431 11223456788999999999999999
Q ss_pred HhCCCCCCCcccccccCCCCcCchhHHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHHHHHHhh-ccCCCchHHHHH
Q 005723 298 FNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK-VLQLPWRWGMKY 376 (681)
Q Consensus 298 ~~~p~~~~~~~~~~~~~~pW~~d~~~~~aW~~G~TG~P~VDAaMRqL~~TGwmHnr~Rm~vAsfl~k-~L~idWr~G~~~ 376 (681)
+++|.+...++.+.+..++|..|++.|++|++|+|||||||||||||++|||||||+|||||||||| +|+||||+|++|
T Consensus 310 ~~~p~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~vDA~MrqL~~tG~mHnr~Rm~vAsfl~k~~L~idWr~G~~~ 389 (537)
T 3fy4_A 310 FGTPNFDKMKGNRICKQIPWNEDHAMLAAWRDGKTGYPWIDAIMVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDV 389 (537)
T ss_dssp HTCTTTTSSTTCTTSCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCBCHHHHHHH
T ss_pred HHCcchhcccCChhhhcCCchhhhHHHHHHHcCCCCCHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 9999988788888888999999999999999999999999999999999999999999999999997 999999999999
Q ss_pred HHHhcccccCCCCccchhhhhcCCCCCCCcccccCccccccccCCchhhHHhhchhccCCCCCcccCCCCCChhHHHHhC
Q 005723 377 FWDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAG 456 (681)
Q Consensus 377 F~~~LlD~D~a~n~g~Wqw~aG~g~d~~~~~RifNP~~q~~k~Dp~G~yIr~wvPeL~~~p~~~ih~pw~~~~~~~~~~g 456 (681)
|+++|||||+++|+|||||+||+|+|+. |||||||++|++||||+|+|||||||||++||+++||+||+++..+|+++|
T Consensus 390 F~~~liD~D~a~n~g~Wqw~ag~g~d~~-~fRifNP~~Q~~kfDp~G~yIr~wvPEL~~lp~~~Ih~Pw~~~~~~~~~~g 468 (537)
T 3fy4_A 390 FERLLIDSDWAINNGNWMWLSCSSFFYQ-FNRIYSPISFGKKYDPDGKYIRHFLPVLKDMPKQYIYEPWTAPLSVQTKAN 468 (537)
T ss_dssp HHHHCTTCCHHHHHHHHHHHTTSSSCCC-TTCCCCTTTTGGGTCTTCHHHHHHCGGGTTCCTTTTTCGGGSCHHHHHHHT
T ss_pred HHHHccccccccChHhhhhhcccCCCcc-cccccCHHHHHHHhCCCchHHHHhCHhhcCCCHHhhCCcccCCHHHHHhcC
Confidence 9999999999999999999999999987 999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCcCHHHHHHHHHHHHHHHHHHH
Q 005723 457 IELGSNYPFPIVRIDAAKCRLDEALSEMWQQE 488 (681)
Q Consensus 457 ~~~~~~YP~Pivd~~~~~~~~~~~~~~~~~~~ 488 (681)
|.+|.+||.|||||+++|++++++|++.++.-
T Consensus 469 ~~~g~~YP~PIVdh~~ar~~a~~~~~~~~~~~ 500 (537)
T 3fy4_A 469 CIVGKDYPKPMVLHDSASKECKRKMGEAYALN 500 (537)
T ss_dssp CCBTTTBCCCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998877544
No 3
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=100.00 E-value=2.6e-117 Score=1003.38 Aligned_cols=473 Identities=25% Similarity=0.391 Sum_probs=407.9
Q ss_pred CCeEEEEEcCCCCCCCCHHHHHHHHc-C---CeEEEEEEcCCCCCCCCCchhhHHHHHHhHHHHHHHHHhC---CCceEE
Q 005723 4 RGCSIVWFRRDLRVEDNPALAAGVRA-G---AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSL---GTSLVT 76 (681)
Q Consensus 4 ~~~~LvWFRrDLRl~DN~AL~aA~~~-~---~vlpVfI~dP~~~~~~~~~r~~r~FL~esL~dL~~~L~~~---G~~L~v 76 (681)
.+++||||||||||+||+||.+|++. . +||||||+||.++.....+..+.+||++||.+|+++|+++ |++|+|
T Consensus 3 ~~~~lvWFRrDLRl~DN~AL~~A~~~~~~g~~vl~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~~~~G~~L~v 82 (538)
T 3tvs_A 3 RGANVIWFRHGLRLHDNPALLAALADKDQGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLV 82 (538)
T ss_dssp SCEEEEEESSCCCSSSCHHHHTTTGGGTTTCBCCEEEEECSSSSCSTTCCHHHHHHHHHHHHHHHHHGGGSCSSSSCCEE
T ss_pred CCcEEEEeCCCcchhhhHHHHHHHHhCCCCCCEEEEEecChhhhccCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEE
Confidence 46899999999999999999999876 3 7999999999987655566666679999999999999999 999999
Q ss_pred EeCCChHHHHHHHHHHcCCCEEEEecccChhhHHHHHHHHHHHHhCCeEEEEecCCeeeCCccccccc-CCcccchHHHH
Q 005723 77 KRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQ-GQPFATFAAFW 155 (681)
Q Consensus 77 ~~~g~~~~~L~~L~~~~~~~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~~-g~~~~~f~~f~ 155 (681)
++ |++.++|.+|+++++|++||+|++|+|++++||++|+++|++.||.+++|++++|++|++|.+++ |.+|.+|++|+
T Consensus 83 ~~-G~~~~vl~~L~~~~~a~~V~~n~~~~~~~~~RD~~v~~~l~~~gi~~~~~~~~~l~~p~~v~~~~~~~~~~~f~~f~ 161 (538)
T 3tvs_A 83 FE-GEPAYIFRRLHEQVRLHRICIEQDCEPIWNERDESIRSLCRELNIDFVEKVSHTLWDPQLVIETNGGIPPLTYQMFL 161 (538)
T ss_dssp EE-SCHHHHHHHHHHHHCEEEECEECCCCGGGHHHHHHHHHHHHHSSCCCCEECCSSSSCTTHHHHHTTTSCCCSHHHHH
T ss_pred Ee-CCHHHHHHHHHHHcCCCEEEEccCCCHHHHHHHHHHHHHHHhCCceEEEecCCEEEChhhcccCCCCCCCcchHHHH
Confidence 87 89999999999999999999999999999999999999999999999999999999999997764 57899999999
Q ss_pred HHHHcCCCCCCCCCCCCCC--CCCCCCC------------CCCCCCCCccccchhchhhhhcCCCCcCHHHHHHHHHHHh
Q 005723 156 EKCLSMPFDPDAPLLPPKR--INSGDMS------------RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFI 221 (681)
Q Consensus 156 ~~~~~~~~~p~~p~~~p~~--~~~~~i~------------~~~~~~l~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl 221 (681)
+++..+. .+..|.+.|.. +.....+ ...++++++..... .......|+|||++|+++|++|+
T Consensus 162 ~~~~~~~-~~~~p~~~p~~~~~~~~~~p~~~~~~~~~~~~~p~l~~l~~~~~~~---~~~~~~~~~~Ge~~A~~~L~~Fl 237 (538)
T 3tvs_A 162 HTVQIIG-LPPRPTADARLEDATFVELDPEFCRSLKLFEQLPTPEHFNVYGDNM---GFLAKINWRGGETQALLLLDERL 237 (538)
T ss_dssp HHHTTTT-CSSCCCCCCCCCCCCCCCCCTTTTTTSCCBSSCCCTTTTSCCCCCS---SCCCCCCCCCCHHHHHHHHHHHH
T ss_pred HHHHhhC-CCCCCCCCccccccccccCCcccccccccccCCCCHHHcCCCcccc---cccccCCCCCCHHHHHHHHHHHH
Confidence 8876543 22223333211 1100000 01234444432210 00012358999999999999999
Q ss_pred cC----cCCcccccccCCC--CCCCCCCchhhhCCCCCHHHHHHHHHHHHhhhhhcCCCC-----CcchHHHHHHHHHHH
Q 005723 222 NG----PLIEYSKNRRKAD--SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKA-----GDESVNLFLKSIGLR 290 (681)
Q Consensus 222 ~~----~l~~Y~~~Rn~p~--~~~tS~LSPyL~fG~LSpReV~~~v~~~~~~~~~~~~~~-----~~~s~~~fl~eL~WR 290 (681)
.+ .+.+|++.||.+. .++||+|||||+|||||||+|++++.+... ...... ...+++.|++||+||
T Consensus 238 ~~~~~~~l~~y~~~r~~~~~~~~~tS~LSpyL~~G~lS~r~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~f~~eL~WR 314 (538)
T 3tvs_A 238 KVEQHAFERGFYLPNQALPNIHDSPKSMSAHLRFGCLSVRRFYWSVHDLFK---NVQLRACVRGVQMTGGAHITGQLIWR 314 (538)
T ss_dssp HHHHHHHHSCCCCTTTTSCCSSCCSCCCHHHHHTTSSCHHHHHHHHHHHTC---SSSCCCCCSSSCCTTTTTTHHHHHHH
T ss_pred HhhhhhhHhhhcccccCcccccCCCcCCCHHHhCCCcCHHHHHHHHHHHHh---hhcccccccccccchHHHHHHHHHHH
Confidence 42 3899999999986 578999999999999999999999976531 000000 224567899999999
Q ss_pred HHHHHHHHhCCCCCCCcccccccCCCCcC-chhHHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHHHHHHhh-ccCC
Q 005723 291 EYSRYMSFNHPYSHERPLLGHLKFFSWVV-DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK-VLQL 368 (681)
Q Consensus 291 Ef~~~l~~~~p~~~~~~~~~~~~~~pW~~-d~~~~~aW~~G~TG~P~VDAaMRqL~~TGwmHnr~Rm~vAsfl~k-~L~i 368 (681)
|||+++++++|.+...++++.++.++|.. |++.|++|++|+|||||||||||||++|||||||+|||||||||| +|+|
T Consensus 315 ef~~~~~~~~p~~~~~~~~~~~~~~~w~~~~~~~~~aW~~G~TG~P~VDA~MrqL~~tG~mHnr~Rm~vAsfl~k~~L~i 394 (538)
T 3tvs_A 315 EYFYTMSVNNPNYDRMEGNDICLSIPWAKPNENLLQSWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQ 394 (538)
T ss_dssp HHHHHHHHHSSCTTSSSSCSSCCCCCCCCCCSSHHHHHHTTCSSCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTTTTCC
T ss_pred HHHHHHHHhCcchhhccCChhhhcCCccccCHHHHHHHHhCCCCCHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhhhCC
Confidence 99999999999998788888888999988 889999999999999999999999999999999999999999999 9999
Q ss_pred CchHHHHHHHHhcccccCCCCccchhhhhcCCC-CCCCcccccCccccccccCCchhhHHhhchhccCCCCCcccCCCCC
Q 005723 369 PWRWGMKYFWDTLLDADLESDALGWQYISGTIP-DGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNA 447 (681)
Q Consensus 369 dWr~G~~~F~~~LlD~D~a~n~g~Wqw~aG~g~-d~~~~~RifNP~~q~~k~Dp~G~yIr~wvPeL~~~p~~~ih~pw~~ 447 (681)
||++|++||+++|||||+++|+|||||+||+|+ |+.||||||||++|++||||+|+|||||||||++||+++||+||++
T Consensus 395 dWr~G~~~F~~~llD~D~a~n~g~Wqw~ag~g~Dd~~pyfRifNP~~Q~~kfDp~G~YIrrwvPEL~~lp~~~Ih~Pw~~ 474 (538)
T 3tvs_A 395 SWEHGLQHFLKYLLDADWSVCAGNWMWVSSSAFERLLDSSLVTCPVALAKRLDPDGTYIKQYVPELMNVPKEFVHEPWRM 474 (538)
T ss_dssp CHHHHHHHHHHHCTTCCHHHHHHHHHHHSCCCSSCCCTHHHHCSTTTHHHHSCTTCTTGGGTCGGGSSSCCSSCCSHHHH
T ss_pred CchHHHHHHHHHcccCchhhchhhhhhhhcCCCcCCCCceeeeCHHHHHHHhCCCcchHHHhChhhcCCCHHhhcCcccC
Confidence 999999999999999999999999999999999 5899999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhCCccCCCCCCCCcCHHHHHHHHHHHHHHH
Q 005723 448 PESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484 (681)
Q Consensus 448 ~~~~~~~~g~~~~~~YP~Pivd~~~~~~~~~~~~~~~ 484 (681)
+..+|+++||.+|.+||.|||||+++|++++++|+++
T Consensus 475 ~~~~~~~~~~~~g~~YP~PIVdh~~ar~~al~~~~~~ 511 (538)
T 3tvs_A 475 SAEQQEQYECLIGVHYPERIIDLSMAVKRNMLAMKSL 511 (538)
T ss_dssp HTTHHHHSSCCSSSSSCCCSSCSHHHHHHHHHHHHTT
T ss_pred CHHHHHHcCCccCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998644
No 4
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=3.4e-116 Score=988.72 Aligned_cols=466 Identities=26% Similarity=0.423 Sum_probs=403.8
Q ss_pred CCCCeEEEEEcCCCCCCCCHHHHHHHHcC-CeEEEEEEcCCCCCC-----CCCchhhHHHHHHhHHHHHHHHHhCCCceE
Q 005723 2 SGRGCSIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGP-----YYPGRVSRWWLKHSLSHLDSSLRSLGTSLV 75 (681)
Q Consensus 2 ~~~~~~LvWFRrDLRl~DN~AL~aA~~~~-~vlpVfI~dP~~~~~-----~~~~r~~r~FL~esL~dL~~~L~~~G~~L~ 75 (681)
.+++++|||||||||++||+||.+|++.+ +|+||||+||.++.. ...+..+.+||++||++|+++|+++|++|+
T Consensus 3 m~~~~~l~WfrrDLRl~DN~aL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~ 82 (489)
T 1np7_A 3 HVPPTVLVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLL 82 (489)
T ss_dssp CCCCEEEEEESSCCCSTTCHHHHHHHHTTSEEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCcEEEEeCCCCCcchHHHHHHHHhcCCCEEEEEEECchhhcccccccCCCCHHHHHHHHHHHHHHHHHHHHCCCcEE
Confidence 34568999999999999999999999875 899999999987652 235666677999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHcCCCEEEEecccChhhHHHHHHHHHHHHhCCeEEEEecCCeeeCCcccccccCCcccchHHHH
Q 005723 76 TKRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFW 155 (681)
Q Consensus 76 v~~~g~~~~~L~~L~~~~~~~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~~g~~~~~f~~f~ 155 (681)
++. |++.++|.+|+++++|++|++|++|+|++++||++|+++|++.||+++++++++|++|+++.+..|++|++|++|+
T Consensus 83 v~~-g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~~~~~g~~~~vft~F~ 161 (489)
T 1np7_A 83 VTT-GLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFR 161 (489)
T ss_dssp EEE-SCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCGGGSSSCGGGCCSSHHHHH
T ss_pred EEE-CCHHHHHHHHHHHcCCCEEEEecccCHHHHHHHHHHHHHHHhcCCeEEEecCCeeeCccccccCCCCCCchHHHHH
Confidence 986 7999999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred HHHH-cCCCCCCCCCCCCCCCCCC--CCC---CCCCCCCCccccchhchhhhhcCCCCcCHHHHHHHHHHHh--cCcCCc
Q 005723 156 EKCL-SMPFDPDAPLLPPKRINSG--DMS---RCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFI--NGPLIE 227 (681)
Q Consensus 156 ~~~~-~~~~~p~~p~~~p~~~~~~--~i~---~~~~~~l~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl--~~~l~~ 227 (681)
+++. +.. .+..|.+.|..+++. .+. ...++++++... +......|+|||++|+++|++|+ ++++.+
T Consensus 162 ~~~~~~~~-~~~~p~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~Ge~~A~~~L~~Fl~~~~~l~~ 235 (489)
T 1np7_A 162 KDIEKKKI-SIRPCFFAPSQLLPSPNIKLELTAPPPEFFPQINF-----DHRSVLAFQGGETAGLARLQDYFWHGDRLKD 235 (489)
T ss_dssp HHHHTTTC-CCCCCCCCCSCCCCCCCCCCCCCCCCGGGSCCCCC-----CTTSSCCCCCSHHHHHHHHHHHHTTSCCGGG
T ss_pred HHHHHhcc-CCCCCCCCcccccCccccccccCCCCHhhcCCCCc-----CccccCCCCCcHHHHHHHHHHHHhcchhHhh
Confidence 9987 432 111223333222110 000 012233333210 00112358999999999999999 678999
Q ss_pred ccccccCCC-CCCCCCCchhhhCCCCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 005723 228 YSKNRRKAD-SATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHER 306 (681)
Q Consensus 228 Y~~~Rn~p~-~~~tS~LSPyL~fG~LSpReV~~~v~~~~~~~~~~~~~~~~~s~~~fl~eL~WREf~~~l~~~~p~~~~~ 306 (681)
|++.||.|. .++||+|||||||||||||+|++++.+... . ....+++++|++||+|||||+++++++|.+...
T Consensus 236 Y~~~Rd~~~~~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~----~--~~~~~~~~~f~~eL~WRef~~~~~~~~p~~~~~ 309 (489)
T 1np7_A 236 YKETRNGMVGADYSSKFSPWLALGCLSPRFIYQEVKRYEQ----E--RVSNDSTHWLIFELLWRDFFRFVAQKYGNKLFN 309 (489)
T ss_dssp HHHHTTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHH----H--TCCSHHHHHHHHHHHHHHHHHHHHHHHGGGGGS
T ss_pred hhhcccCCccccCCcCcChhhcCCCCCHHHHHHHHHHHhh----c--ccccchHHHHHHHHHHHHHHHHHHHHCcchhhh
Confidence 999999875 589999999999999999999999976321 1 123457889999999999999999999987644
Q ss_pred cccccccCCCCcCchhHHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHHHHHHhhccCCCchHHHHHHHHhcccccC
Q 005723 307 PLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADL 386 (681)
Q Consensus 307 ~~~~~~~~~pW~~d~~~~~aW~~G~TG~P~VDAaMRqL~~TGwmHnr~Rm~vAsfl~k~L~idWr~G~~~F~~~LlD~D~ 386 (681)
++...++.++|..|++.|++|++|+|||||||||||||++|||||||+||||||||||+|+||||+|++||+++|||||+
T Consensus 310 ~~~~~~~~~~W~~d~~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~G~~~F~~~LiD~D~ 389 (489)
T 1np7_A 310 RGGLLNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDYDV 389 (489)
T ss_dssp TTTTTTCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHCTTCCH
T ss_pred hcCcccccCCCccCHHHHHHHHcCCCCChhHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCCChhHHHHHHHHhcccCh
Confidence 55445677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccchhhhhcCCCCCCCcccccCccccccccCCchhhHHhhchhccCCCCCcccCCCCCChhHHHHhCCccCCCCCCC
Q 005723 387 ESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFP 466 (681)
Q Consensus 387 a~n~g~Wqw~aG~g~d~~~~~RifNP~~q~~k~Dp~G~yIr~wvPeL~~~p~~~ih~pw~~~~~~~~~~g~~~~~~YP~P 466 (681)
++|+|||||+||+|+|+. |||||||++|++||||+|+|||||||||+++|+++||+||+++..+++++||.+|.+||.|
T Consensus 390 a~N~g~wqw~ag~g~d~~-~~RifNp~~q~~kfDp~g~yIr~wvPeL~~~p~~~ih~pw~~~~~~~~~~~~~~g~~YP~P 468 (489)
T 1np7_A 390 CSNWGNWNYTAGIGNDAR-DFRYFNIPKQSQQYDPQGTYLRHWLPELKNLPGDKIHQPWLLSATEQKQWGVQLGVDYPRP 468 (489)
T ss_dssp HHHHHHHHHHHTSSCCTT-SCCCCCHHHHHHHHSTTSHHHHHHCGGGTTCCSGGGGCGGGCCHHHHHHTTCCBTTTBCCC
T ss_pred hcChHhhhhhhccCCCcc-cccccCHHHHhhhcCCCCccHHHhCHHhhccCcccccCCccCCHHHHHHhccccCCCCCCC
Confidence 999999999999999988 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHH
Q 005723 467 IVRIDAAKCRLDEAL 481 (681)
Q Consensus 467 ivd~~~~~~~~~~~~ 481 (681)
||||+++|+++++++
T Consensus 469 iVd~~~~r~~a~~~~ 483 (489)
T 1np7_A 469 CVNFHQSVEARRKIE 483 (489)
T ss_dssp SSCHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999988755
No 5
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=100.00 E-value=8.7e-116 Score=995.27 Aligned_cols=469 Identities=26% Similarity=0.404 Sum_probs=410.6
Q ss_pred CeEEEEEcCCCCCCCCHHHHHHHHcC-C------eEEEEEEcCCCCCCCCCchhhHHHHHHhHHHHHHHHHhCCCceEEE
Q 005723 5 GCSIVWFRRDLRVEDNPALAAGVRAG-A------VIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTK 77 (681)
Q Consensus 5 ~~~LvWFRrDLRl~DN~AL~aA~~~~-~------vlpVfI~dP~~~~~~~~~r~~r~FL~esL~dL~~~L~~~G~~L~v~ 77 (681)
..+|||||||||++||+||.+|++.+ + |+||||+||.++.....+..+.+||++||++|+++|+++|++|+++
T Consensus 29 ~~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~ 108 (543)
T 2wq7_A 29 STLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKLNSRLFVV 108 (543)
T ss_dssp EEEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGCTTSCHHHHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred ceEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhcccCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 34599999999999999999998753 4 9999999998776545666677799999999999999999999998
Q ss_pred eCCChHHHHHHHHHHcCCCEEEEecccChhhHHHHHHHHHHHHhCCeEEEEecCCeeeCCccccc-ccCCcccchHHHHH
Q 005723 78 RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVND-AQGQPFATFAAFWE 156 (681)
Q Consensus 78 ~~g~~~~~L~~L~~~~~~~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~-~~g~~~~~f~~f~~ 156 (681)
+ |++.++|.+|+++++|++|+++++|+|+++.||++|+++|++.||+++++++++|++|+++.. ..|++|++|++|++
T Consensus 109 ~-g~~~~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~~~~~gi~~~~~~~~~l~~p~~v~~~~~g~~~~vft~F~~ 187 (543)
T 2wq7_A 109 R-GKPAEVFPRIFKSWRVEMLTFETDIEPYSVTRDAAVQKLAKAEGVRVETHCSHTIYNPELVIAKNLGKAPITYQKFLG 187 (543)
T ss_dssp E-SCHHHHHHHHHHHTTEEEEEEECCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSSCHHHHHHHTTTSCCCSHHHHHH
T ss_pred e-CCHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHHHHHHHHHcCCEEEEecCCEEECccccccccCCCCCccHHHHHH
Confidence 6 799999999999999999999999999999999999999999999999999999999999554 56899999999999
Q ss_pred HHHcCCCCCCCCCCCCCCCCCCCCCC--------------CCCCCCCccccchhchhhhhcCCCCcCHHHHHHHHHHHhc
Q 005723 157 KCLSMPFDPDAPLLPPKRINSGDMSR--------------CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFIN 222 (681)
Q Consensus 157 ~~~~~~~~p~~p~~~p~~~~~~~i~~--------------~~~~~l~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~ 222 (681)
++... ..+. |.+.|..++....+. ..++++++.. . ......|+|||++|+++|++||+
T Consensus 188 ~~~~~-~~~~-p~~~p~~~~~~~~p~~~~~~~~~~~~~~~p~l~~l~~~~-----~-~~~~~~~~~Ge~~A~~~L~~Fl~ 259 (543)
T 2wq7_A 188 IVEQL-KVPK-VLGVPEKLKNMPTPPKDEVEQKDSAAYDCPTMKQLVKRP-----E-ELGPNKFPGGETEALRRMEESLK 259 (543)
T ss_dssp HHTTS-CCCC-CCCCCCCCSSCCCCCCCHHHHHCTTTTSCCCHHHHCSCG-----G-GCCCCCSCCSHHHHHHHHHHHHT
T ss_pred HHHHc-cCCC-CCCcchhccccccccccccccccccccCCCCHHHcCCCc-----c-ccccCCCCCCHHHHHHHHHHHHh
Confidence 98653 2222 333332222110000 0011111111 0 11123599999999999999999
Q ss_pred Cc--CCcccccccCCCC--CCCCCCchhhhCCCCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 005723 223 GP--LIEYSKNRRKADS--ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSF 298 (681)
Q Consensus 223 ~~--l~~Y~~~Rn~p~~--~~tS~LSPyL~fG~LSpReV~~~v~~~~~~~~~~~~~~~~~s~~~fl~eL~WREf~~~l~~ 298 (681)
++ +.+|++.||.|.. ++||+|||||||||||||+|++++.+.+. +.....++++.|++||+|||||+++++
T Consensus 260 ~~~~l~~Y~~~Rd~p~~~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~-----~~~~~~~~~~~f~~eL~WREf~~~~~~ 334 (543)
T 2wq7_A 260 DEIWVARFEKPNTAPNSLEPSTTVLSPYLKFGCLSARLFNQKLKEIIK-----RQPKHSQPPVSLIGQLMWREFYYTVAA 334 (543)
T ss_dssp CHHHHHHCCGGGSCSSCSSCSSCCCHHHHHHTSSCHHHHHHHHHHHHH-----HCSSCCCTTTSHHHHHHHHHHHHHHHH
T ss_pred CChhhhhhcccccCccccccCCCCcCHhHhCCCCCHHHHHHHHHHHHh-----ccccccccHHHHHHHHHHHHHHHHHHH
Confidence 99 9999999999985 89999999999999999999999976431 111234567889999999999999999
Q ss_pred hCCCCCCCcccccccCCCCcCchhHHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHHHHHHhh-ccCCCchHHHHHH
Q 005723 299 NHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK-VLQLPWRWGMKYF 377 (681)
Q Consensus 299 ~~p~~~~~~~~~~~~~~pW~~d~~~~~aW~~G~TG~P~VDAaMRqL~~TGwmHnr~Rm~vAsfl~k-~L~idWr~G~~~F 377 (681)
++|.+...++.+.++.++|..+++.|++|++|+|||||||||||||++|||||||+|||||||||| +|+|||++|++||
T Consensus 335 ~~P~~~~~~~~~~~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMrqL~~tG~mHnr~Rm~vASFL~kg~L~idWr~G~~~F 414 (543)
T 2wq7_A 335 AEPNFDRMLGNVYCMQIPWQEHPDHLEAWTHGRTGYPFIDAIMRQLRQEGWIHHLARHAVACFLTRGDLWISWEEGQRVF 414 (543)
T ss_dssp TCTTTTSSTTCTTCCCCCCCCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTTTTCCCHHHHHHHH
T ss_pred hCCccccccCChHhhcCCCccCHHHHHHHHcCCCCCHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhCCCCchHHHHH
Confidence 999998778888889999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHhcccccCCCCccchhhhhcCCCCCCCcccccCccccccccCCchhhHHhhchhccCCCCCcccCCCCCChhHHHHhCC
Q 005723 378 WDTLLDADLESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGI 457 (681)
Q Consensus 378 ~~~LlD~D~a~n~g~Wqw~aG~g~d~~~~~RifNP~~q~~k~Dp~G~yIr~wvPeL~~~p~~~ih~pw~~~~~~~~~~g~ 457 (681)
+++|||||+++|+|||||+||+|+|+. |||||||++|++||||+|+|||||||||+++|+++||+||+++..+|+++||
T Consensus 415 ~~~LiD~D~a~n~g~Wqw~aG~g~D~~-~~RifNP~~q~~kfDp~g~yIr~wvPEL~~~p~~~ih~Pw~~~~~~~~~~~~ 493 (543)
T 2wq7_A 415 EQLLLDQDWALNAGNWMWLSASAFFHQ-YFRVYSPVAFGKKTDPQGHYIRKYVPELSKYPAGCIYEPWKASLVDQRAYGC 493 (543)
T ss_dssp HHHCTTCCHHHHHHHHHHHTTSSSCCC-TTCCCCTTTGGGGTCTTCHHHHHHSGGGTTSCHHHHTSGGGSCHHHHHHTTC
T ss_pred HHHhccCCcccCHHHHHHHhcCCCcCc-cccccCHHHHhhhcCCCchhHHHhCHHhhccccccccCcccCChHHHHhhcc
Confidence 999999999999999999999999988 9999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHH
Q 005723 458 ELGSNYPFPIVRIDAAKCRLDEALSEMWQQE 488 (681)
Q Consensus 458 ~~~~~YP~Pivd~~~~~~~~~~~~~~~~~~~ 488 (681)
.+|.+||.|||||+++|++++++|+.+++..
T Consensus 494 ~~g~~YP~PiVd~~~~r~~al~~~~~~~~~~ 524 (543)
T 2wq7_A 494 VLGTDYPHRIVKHEVVHKENIKRMGAAYKVN 524 (543)
T ss_dssp CBTTTBCCCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999887644
No 6
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=100.00 E-value=1.3e-116 Score=986.29 Aligned_cols=458 Identities=31% Similarity=0.525 Sum_probs=399.3
Q ss_pred eEEEEEcCCCCCCCCHHHHHHHH--cCCeEEEEEEcCCCCCCCCCchhhHHHHHHhHHHHHHHHHhCCCceEEE----eC
Q 005723 6 CSIVWFRRDLRVEDNPALAAGVR--AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTK----RS 79 (681)
Q Consensus 6 ~~LvWFRrDLRl~DN~AL~aA~~--~~~vlpVfI~dP~~~~~~~~~r~~r~FL~esL~dL~~~L~~~G~~L~v~----~~ 79 (681)
.+|||||||||++||+||.+|++ .++|+||||+||.+++....+..+.+||++||++|+++|+++|++|+++ .
T Consensus 2 ~~l~WfrrDLRl~DN~aL~~A~~~~~~~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~~~~~- 80 (471)
T 1dnp_A 2 THLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDF- 80 (471)
T ss_dssp EEEEECSSCCCSTTCHHHHHHSSSTTSEEEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCEEEEECSSH-
T ss_pred CEEEEeCCCCcccchHHHHHHHhCCCCCEEEEEEECchhhccCCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEccCC-
Confidence 57999999999999999999998 5699999999998654344566777799999999999999999999998 5
Q ss_pred CChHHHHHHHHHHcCCCEEEEecccChhhHHHHHHHHHHHHhCCeEEEEecCCeeeCCcccccccCCcccchHHHHHHHH
Q 005723 80 TDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCL 159 (681)
Q Consensus 80 g~~~~~L~~L~~~~~~~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~~g~~~~~f~~f~~~~~ 159 (681)
|++.++|.+|+++++|++|++|++|+|++..||++|+++|.+ |.++++++++|++|+++.++.|++|++|++|++++.
T Consensus 81 g~~~~~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l~~--i~~~~~~~~~l~~~~~~~~~~g~~~~vft~f~~~~~ 158 (471)
T 1dnp_A 81 VASVEIVKQVCAENSVTHLFYNYQYEVNERARDVEVERALRN--VVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWL 158 (471)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECCCSHHHHHHHHHHHHHCTT--SEEEEECCSSSSCTTSSCCTTSCCCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEecccCchHHHHHHHHHHHhcC--cEEEEecCCEEEchhhcccCCCCCCcchHHHHHHHH
Confidence 689999999999999999999999999999999999999976 999999999999999999988999999999999876
Q ss_pred cCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCccccchhchhhhhcCCCCcCHHHHHHHHHHHhcCcCCcccccccCCCCC
Q 005723 160 SMPFD-PDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSA 238 (681)
Q Consensus 160 ~~~~~-p~~p~~~p~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~ 238 (681)
+...+ ++.+.+.|..+...++....++++++... ......|+|||++|+++|++|+++++.+|++.||.|..+
T Consensus 159 ~~l~~~~p~~~~~p~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~Ge~~A~~~L~~Fl~~~l~~Y~~~rd~p~~~ 232 (471)
T 1dnp_A 159 KRLREGMPECVAAPKVRSSGSIEPSPSITLNYPRQ------SFDTAHFPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVE 232 (471)
T ss_dssp HHHHTCCCCCCCCCCCCTTCCCCCCCCCCCCSCCC------CCCTTTSCCSHHHHHHHHHHHHHTHHHHHHHHTTCTTSC
T ss_pred HhccccCCCCCCCccccCcccccCCCCcccCCCcc------ccccccCCCCHHHHHHHHHHHHHHHHHHhhhccCCcCcc
Confidence 54221 11223333222211111111222222110 011235899999999999999999999999999999999
Q ss_pred CCCCCchhhhCCCCCHHHHHHHHHHHHhhhhhcCCCCCcch-HHHHHHHHHHHHHHHHHHHhCCCCCCC-cccccccCCC
Q 005723 239 TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDES-VNLFLKSIGLREYSRYMSFNHPYSHER-PLLGHLKFFS 316 (681)
Q Consensus 239 ~tS~LSPyL~fG~LSpReV~~~v~~~~~~~~~~~~~~~~~s-~~~fl~eL~WREf~~~l~~~~p~~~~~-~~~~~~~~~p 316 (681)
+||+|||||+|||||||+|++++.+... + ...++ .+.|++||+|||||+++++++|.+... ++.+.++.++
T Consensus 233 ~tS~LSpyL~~G~lSpr~v~~~~~~~~~-----~--~~~~~~~~~fl~eL~WREf~~~~~~~~P~~~~~~~~~~~~~~l~ 305 (471)
T 1dnp_A 233 GTSRLSASLATGGLSPRQCLHRLLAEQP-----Q--ALDGGAGSVWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQ 305 (471)
T ss_dssp CSCCCHHHHHHTSSCHHHHHHHHHHHCG-----G--GGGTSTTHHHHHHHHHHHHHHHHHHHCGGGGGTCCSSGGGGGSC
T ss_pred CCCCCCHhHcCCCcCHHHHHHHHHHHhc-----c--ccccccHHHHHHHHHHHHHHHHHHHhCCchhccCCcchhhhcCC
Confidence 9999999999999999999999976431 1 11245 788999999999999999999998765 8888888899
Q ss_pred CcCchhHHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHHHHHHhhccCCCchHHHHHHHHhcccccCCCCccchhhh
Q 005723 317 WVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYI 396 (681)
Q Consensus 317 W~~d~~~~~aW~~G~TG~P~VDAaMRqL~~TGwmHnr~Rm~vAsfl~k~L~idWr~G~~~F~~~LlD~D~a~n~g~Wqw~ 396 (681)
|..|++.|++|++|+|||||||||||||++|||||||+||+|||||||+|+|||++|++||+++|||||+++|+|||||+
T Consensus 306 w~~d~~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~RMivAsFL~k~L~idWr~g~~~F~~~llD~d~a~n~g~wqw~ 385 (471)
T 1dnp_A 306 WQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWA 385 (471)
T ss_dssp CCCCHHHHHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcCHHHHHHHHHHHHHhcCCCchHHHHHHHHhccCCCcccCHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCcccccCccccccccCCchhhHHhhchhccCCCCCcccCCCCCChhHHHHhCCccCCCCCCCCcCHHHHHHH
Q 005723 397 SGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCR 476 (681)
Q Consensus 397 aG~g~d~~~~~RifNP~~q~~k~Dp~G~yIr~wvPeL~~~p~~~ih~pw~~~~~~~~~~g~~~~~~YP~Pivd~~~~~~~ 476 (681)
||+|+|++||||||||++|++||||+|+|||||||||+++|+++||+||++ ++.+||.+ +||.|||||+++|++
T Consensus 386 ag~G~d~~py~RifNp~~q~~kfDp~G~YIrrwvPeL~~~p~~~ih~Pw~~----~~~~~~~~--~YP~PiVd~~~~r~~ 459 (471)
T 1dnp_A 386 ASTGTDAAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKW----AQKAGVTL--DYPQPIVEHKEARVQ 459 (471)
T ss_dssp TTCSTTCCCTTCCCCHHHHHHHHTTTCHHHHHHCGGGTTSCTTGGGSHHHH----HHTTTCCC--SSCCCSSCHHHHHHH
T ss_pred cCCCCCCCCcceecCHHHHHHhcCCCchhHHHhChhhccCChhhcCCchhh----HHhcCCCC--CCCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999986 45688877 899999999999999
Q ss_pred HHHHHHHHH
Q 005723 477 LDEALSEMW 485 (681)
Q Consensus 477 ~~~~~~~~~ 485 (681)
++++|+.+.
T Consensus 460 al~~~~~~~ 468 (471)
T 1dnp_A 460 TLAAYEAAR 468 (471)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999997764
No 7
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=100.00 E-value=5.5e-115 Score=977.02 Aligned_cols=458 Identities=27% Similarity=0.491 Sum_probs=401.6
Q ss_pred CeEEEEEcCCCCCCCCHHHHHHHH-cCCeEEEEEEcCCCCCCCCCchhhHHHHHHhHHHHHHHHHhCCCceEEEeCCChH
Q 005723 5 GCSIVWFRRDLRVEDNPALAAGVR-AGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRSTDSV 83 (681)
Q Consensus 5 ~~~LvWFRrDLRl~DN~AL~aA~~-~~~vlpVfI~dP~~~~~~~~~r~~r~FL~esL~dL~~~L~~~G~~L~v~~~g~~~ 83 (681)
+.+|||||||||++||+||.+|++ .++|+||||+||.+++....+..+.+||++||++|+++|+++|++|++++ |++.
T Consensus 3 ~~~l~WfrrDLRl~Dn~aL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~G~~L~v~~-g~~~ 81 (484)
T 1owl_A 3 APILFWHRRDLRLSDNIGLAAARAQSAQLIGLFCLDPQILQSADMAPARVAYLQGCLQELQQRYQQAGSRLLLLQ-GDPQ 81 (484)
T ss_dssp CCEEEEESSCCCSSSCHHHHHHHHHCSCEEEEEEECHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEE-SCHH
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCCEEEEEEEcchhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEe-CCHH
Confidence 478999999999999999999997 46999999999987655456777777999999999999999999999986 7999
Q ss_pred HHHHHHHHHcCCCEEEEecccChhhHHHHHHHHHHHHhCCeEEEEecCCeeeCCcccccccCCcccchHHHHHHHHcCCC
Q 005723 84 SSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPF 163 (681)
Q Consensus 84 ~~L~~L~~~~~~~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~~g~~~~~f~~f~~~~~~~~~ 163 (681)
++|.+|+++++|++|++|++|+|+++.||++|+++|++.||+++++++++|++|+++.++.|++|++|++|++++.+..
T Consensus 82 ~~l~~l~~~~~~~~v~~~~~~~p~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~~~~~g~~~~vft~f~~~~~~~~- 160 (484)
T 1owl_A 82 HLIPQLAQQLQAEAVYWNQDIEPYGRDRDGQVAAALKTAGIRAVQLWDQLLHSPDQILSGSGNPYSVYGPFWKNWQAQP- 160 (484)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEECCSSSSCTTTCCCTTSCCCSSHHHHHHHHHHSC-
T ss_pred HHHHHHHHHcCCCEEEEeccCChhHHHHHHHHHHHHHHcCcEEEEecCCEEEchhhhcccCCCCchhhHHHHHHHHHhc-
Confidence 9999999999999999999999999999999999999999999999999999999999988999999999999987753
Q ss_pred CCCCCCCCCCCCCCC------------CCCCCCCCCCCccccchhchhhhhcCCCCcCHHHHHHHHHHHhcCcCCccccc
Q 005723 164 DPDAPLLPPKRINSG------------DMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKN 231 (681)
Q Consensus 164 ~p~~p~~~p~~~~~~------------~i~~~~~~~l~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~ 231 (681)
.+ .|++.|..++.. ......++.+++.. .+. . .|+|||++|+++|++|+++++.+|++.
T Consensus 161 ~~-~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~--~-~~~~Ge~~A~~~L~~Fl~~~l~~Y~~~ 231 (484)
T 1owl_A 161 KP-TPVATPTELVDLSPEQLTAIAPLLLSELPTLKQLGFDW-----DGG--F-PVEPGETAAIARLQEFCDRAIADYDPQ 231 (484)
T ss_dssp CC-CCCCCCCSCCCCCHHHHHHHGGGCCSSCCCTGGGTCCC-----CSC--C-SSCSSHHHHHHHHHHHHHTGGGGHHHH
T ss_pred CC-CCCCCccccccccccccccccccccCCCCCHHHcCCCc-----ccc--C-cCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence 22 233333322210 00000111112211 011 2 599999999999999999999999999
Q ss_pred ccCCCCCCCCCCchhhhCCCCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhCCCCCCCccccc
Q 005723 232 RRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGH 311 (681)
Q Consensus 232 Rn~p~~~~tS~LSPyL~fG~LSpReV~~~v~~~~~~~~~~~~~~~~~s~~~fl~eL~WREf~~~l~~~~p~~~~~~~~~~ 311 (681)
||.|..++||+|||||||||||||+|++++.+.... .......++++.|++||+|||||+++++++|.+...++.+.
T Consensus 232 rd~p~~~~tS~LSpyL~~G~lSpr~v~~~~~~~~~~---~~~~~~~~~~~~fl~eL~WREf~~~~~~~~P~~~~~~~~~~ 308 (484)
T 1owl_A 232 RNFPAEAGTSGLSPALKFGAIGIRQAWQAASAAHAL---SRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSL 308 (484)
T ss_dssp TTCTTSCCSCCCHHHHHTTSSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSCCSTG
T ss_pred cCCCCccCCcCccHhHcCCCcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHHHHHHHHhCCccccccCChh
Confidence 999999999999999999999999999999764310 00011135788999999999999999999999888888888
Q ss_pred ccCCCCcCchhHHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHHHHHHhhccCCCchHHHHHHHHhcccccCCCCcc
Q 005723 312 LKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDAL 391 (681)
Q Consensus 312 ~~~~pW~~d~~~~~aW~~G~TG~P~VDAaMRqL~~TGwmHnr~Rm~vAsfl~k~L~idWr~G~~~F~~~LlD~D~a~n~g 391 (681)
++.++|..|++.|++|++|+|||||||||||||++|||||||+||||||||||+|+|||++|++||+++|||||+++|+|
T Consensus 309 ~~~l~w~~d~~~~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~g~~~F~~~llD~d~a~n~g 388 (484)
T 1owl_A 309 WQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCRMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAANNG 388 (484)
T ss_dssp GGGCCCCCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCTHHHHHHHHTTCTTCCHHHHHH
T ss_pred hhcCCCcCCHHHHHHHHcCCCCChhHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCCCCcHHHHHHHHhcccCCcccCHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcCCCCCCCcccccCccccccccCCchhhHHhhchhccCCCCCcccCCCCCChhHHHHhCCccCCCCCCCCcCHH
Q 005723 392 GWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRID 471 (681)
Q Consensus 392 ~Wqw~aG~g~d~~~~~RifNP~~q~~k~Dp~G~yIr~wvPeL~~~p~~~ih~pw~~~~~~~~~~g~~~~~~YP~Pivd~~ 471 (681)
||||+||+|+|++| ||||||++|++||||+|+|||||||||+++|+++||+||+++ +.+| +||.|||||+
T Consensus 389 ~wqw~ag~G~d~~p-fRifNp~~q~~kfDp~g~yIr~wvPeL~~~p~~~ih~Pw~~~----~~~~-----~YP~PiVd~~ 458 (484)
T 1owl_A 389 GWQWSASSGMDPKP-LRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITP----IERR-----GYPAPIVNHN 458 (484)
T ss_dssp HHHHTTTCSSSCCC-CCCCCHHHHHHHHSTTCHHHHHHCGGGTTSCHHHHHHTCCCH----HHHT-----TSCCCSSCHH
T ss_pred HHHHhhCcCCCCCc-cceeCHHHHhhhcCCCchhHHHhChhhhcCChhhcCCcccch----hhhc-----CCCCCCCCHH
Confidence 99999999999999 999999999999999999999999999999999999999983 2333 8999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 005723 472 AAKCRLDEALSEMWQ 486 (681)
Q Consensus 472 ~~~~~~~~~~~~~~~ 486 (681)
++|++++++|+++.+
T Consensus 459 ~~r~~a~~~~~~~~~ 473 (484)
T 1owl_A 459 LRQKQFKALYNQLKA 473 (484)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988764
No 8
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=100.00 E-value=4e-113 Score=948.88 Aligned_cols=424 Identities=27% Similarity=0.470 Sum_probs=379.7
Q ss_pred EEEEEcCCCCCCCCHHHHHHHHcC-CeEEEEEEcCCCCCCCC-CchhhHHHHHHhHHHHHHHHHhCCCceEEEeCCChHH
Q 005723 7 SIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGPYY-PGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRSTDSVS 84 (681)
Q Consensus 7 ~LvWFRrDLRl~DN~AL~aA~~~~-~vlpVfI~dP~~~~~~~-~~r~~r~FL~esL~dL~~~L~~~G~~L~v~~~g~~~~ 84 (681)
+|||||||||++||+||.+|++.+ +|+||||+||.+++... .+..+.+||++||++|+++|+++|++|++++ |++.+
T Consensus 3 ~l~WfrrDLRl~DN~aL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~-g~~~~ 81 (440)
T 2e0i_A 3 CIFIFRRDLRLEDNTGLNYALSECDRVIPVFIADPRQLINNPYKSEFAVSFMINSLLELDDELRKKGSRLNVFF-GEAEK 81 (440)
T ss_dssp EEEEESSCCCSSSCHHHHHHHHHSSEEEEEEEECHHHHSSCTTCCHHHHHHHHHHHHHHHHHHHTTTCCCEEEE-SCHHH
T ss_pred EEEEeCCCCccchhHHHHHHHhcCCCEEEEEEeChhhhccCCcCCHHHHHHHHHHHHHHHHHHHHcCCeEEEEE-CCHHH
Confidence 899999999999999999999864 89999999998765433 5777777999999999999999999999986 79999
Q ss_pred HHHHHHHHcCCCEEEEecccChhhHHHHHHHHHHHHhCCeEEEEecCCeeeCCcccccccCCcccchHHHHHHHHcCCCC
Q 005723 85 SLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFD 164 (681)
Q Consensus 85 ~L~~L~~~~~~~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~~g~~~~~f~~f~~~~~~~~~~ 164 (681)
+|.+|++ +|++|++|++|+|++.+||++|+++|++.||+++++++++|++|+++ +|++|++|++++.+..+.
T Consensus 82 ~l~~l~~--~~~~v~~~~~~~~~~~~rd~~v~~~l~~~gi~~~~~~~~~l~~~~~~------~y~vftpf~~~~~~~~~~ 153 (440)
T 2e0i_A 82 VVSRFFN--KVDAIYVNEDYTPFSISRDEKIRKVCEENGIEFKAYEDYLLTPKSLF------HHRNFTSFYNEVSKVKVR 153 (440)
T ss_dssp HHHHHCT--TCSEEEEECCCSHHHHHHHHHHHHHHHTTTCEEEEECCSCSSCGGGC------CCSSHHHHHHHHTTSCCC
T ss_pred HHHHHHc--CCCEEEEecccChHHHHHHHHHHHHHHHcCceEEEecCCEEEccccc------CcccCcHHHHHHHHhccc
Confidence 9999999 99999999999999999999999999999999999999999999988 689999999998876333
Q ss_pred C-CCCCCCCCCCCCCCCCCCCCCCCCccccchhchhhhhcCCCCcCHHHHHHHHHHHhcCcCCcccccccCCCCCCCCCC
Q 005723 165 P-DAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFL 243 (681)
Q Consensus 165 p-~~p~~~p~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~tS~L 243 (681)
+ ..+++.|..++. + +.+ .. .+. ....|+|||++|+++|+ |+++++.+| +.||.|+.++||+|
T Consensus 154 ~p~~~~~~~~~~~~------p-~~~--~~-lp~-----~~~~~~~Ge~~A~~~L~-Fl~~~l~~Y-~~rd~p~~~~tS~L 216 (440)
T 2e0i_A 154 EPETMEGSFDVTDS------S-MNV--DF-LLT-----FKKIESPLFRGGRREGL-YLLHRNVDF-RRRDYPAENNNYRL 216 (440)
T ss_dssp CCCCCCCCBCCCSS------S-BCG--GG-GGG-----TCCCCCTTCCCSHHHHH-HHHTCCCCG-GGTTCTTTTCCCCC
T ss_pred ccccCCCCcccCCC------c-chh--hh-CCc-----cccCCCCCHHHHHHHHH-HHHhhhhcC-CcCCCccccCCCCc
Confidence 2 211222211110 0 011 00 000 12348999999999999 999999999 99999999999999
Q ss_pred chhhhCCCCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccccCCCCcCchhH
Q 005723 244 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGY 323 (681)
Q Consensus 244 SPyL~fG~LSpReV~~~v~~~~~~~~~~~~~~~~~s~~~fl~eL~WREf~~~l~~~~p~~~~~~~~~~~~~~pW~~d~~~ 323 (681)
||||+|||||||+|++++ ++++.|++||+|||||+++++++|.+...++.+.++.++|..|++.
T Consensus 217 SPyL~~G~lSpr~v~~~~----------------~~~~~fl~eL~WREf~~~~~~~~P~~~~~~~~~~~~~l~W~~d~~~ 280 (440)
T 2e0i_A 217 SPHLKFGTISMREAYYTQ----------------KGKEEFVRELYWRDFFTLLAYYNPHVFGHCYRREYDNISWENNESY 280 (440)
T ss_dssp HHHHHTTSSCHHHHHHHS----------------TTCHHHHHHHHHHHHHHHHHHHCGGGTTSCSSGGGGGCCCCCCHHH
T ss_pred cHhHhCCCCCHHHHHHHh----------------cCHHHHHHHHHHHHHHHHHHHhCCCccccccchhhhcCCcccchHH
Confidence 999999999999999886 1456799999999999999999999988889888899999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHHHHHHhhccCCCchHHHHHHHHhcccccCCCCccchhhhhcCCCCC
Q 005723 324 FKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDG 403 (681)
Q Consensus 324 ~~aW~~G~TG~P~VDAaMRqL~~TGwmHnr~Rm~vAsfl~k~L~idWr~G~~~F~~~LlD~D~a~n~g~Wqw~aG~g~d~ 403 (681)
|++|++|+|||||||||||||++|||||||+||||||||||+|+|||++|++||+++|||||+++|+|||||+||+|+|+
T Consensus 281 ~~aW~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~g~~~F~~~llD~d~a~n~g~wqw~aG~g~d~ 360 (440)
T 2e0i_A 281 FEAWKEGRTGYPIIDAGMRMLNSTGYINGRVRMLVAFFLVKVLFVDWRWGERYFATKLVDYDPAINNGNWQWIASTGVDY 360 (440)
T ss_dssp HHHHHHTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSSCC
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHhCCCccHHHHHHHHHcccCCccccHHHHHHHhCcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcccccCccccccccCCchhhHHhhchhccCCCCCcccCCCCCChhHHHHhCCccCCCCCCCCcCHHHHHHHHHHHHHH
Q 005723 404 RAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSE 483 (681)
Q Consensus 404 ~~~~RifNP~~q~~k~Dp~G~yIr~wvPeL~~~p~~~ih~pw~~~~~~~~~~g~~~~~~YP~Pivd~~~~~~~~~~~~~~ 483 (681)
|||||||++|++||||+|+|||||||||+++|+++||+||++ +|.+||.|||||+++|++++++|++
T Consensus 361 --~~RifNp~~q~~kfDp~g~yIr~wvPeL~~~p~~~ih~pw~~-----------~~~~YP~PiVd~~~~r~~a~~~~~~ 427 (440)
T 2e0i_A 361 --MFRVFNPWKQQEKFDPEAKFIKEWVEELKDVPPSIIHSIYKT-----------KVPGYPSPIVNWLERVNYVKSEYKN 427 (440)
T ss_dssp --SCCCCCHHHHHHHHCTTCHHHHHHCGGGGGSCHHHHTTTTTS-----------CCTTSCCCSSCHHHHHHHHHHHHHH
T ss_pred --CCCccCHHHHHHHhCCCcHhHHHhCHHhhccCcccccCchhh-----------cCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999986 3679999999999999999999977
Q ss_pred HH
Q 005723 484 MW 485 (681)
Q Consensus 484 ~~ 485 (681)
+.
T Consensus 428 ~~ 429 (440)
T 2e0i_A 428 VK 429 (440)
T ss_dssp C-
T ss_pred HH
Confidence 64
No 9
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=100.00 E-value=3.7e-111 Score=953.72 Aligned_cols=459 Identities=24% Similarity=0.319 Sum_probs=376.9
Q ss_pred CCeEEEEEcCCCCCCCCHHHHHHHHcC-CeEEEEEEcCCCCCC------CCCchhhHHHHHHhHHHHHHHHHhCCCceEE
Q 005723 4 RGCSIVWFRRDLRVEDNPALAAGVRAG-AVIAVFIWAPEEEGP------YYPGRVSRWWLKHSLSHLDSSLRSLGTSLVT 76 (681)
Q Consensus 4 ~~~~LvWFRrDLRl~DN~AL~aA~~~~-~vlpVfI~dP~~~~~------~~~~r~~r~FL~esL~dL~~~L~~~G~~L~v 76 (681)
++++|||||+|||++||+||.+|++.+ +|+||||+||.++.. ...+..+.+||++||++|+++|+++|++|++
T Consensus 39 ~~~~l~WfrrDLRl~DN~AL~~A~~~~~~v~~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v 118 (525)
T 2j4d_A 39 KGVTILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLI 118 (525)
T ss_dssp CCEEEEEESSCCCSTTCHHHHHHHHTCSEEEEEEEECGGGGSBCTTTCCBSSCHHHHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCeEEEEeCCCcCcchhHHHHHHHhcCCcEEEEEEECchhhcccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 467899999999999999999999875 899999999986542 2356667779999999999999999999999
Q ss_pred EeCCChHHHHHHHHHHcCCCEEEEecccChhhHHHHHHHHHHHHhCC--eEEEEecCCeeeCCcccccccCCcccchHHH
Q 005723 77 KRSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG--IAVRSFNADLLYEPWDVNDAQGQPFATFAAF 154 (681)
Q Consensus 77 ~~~g~~~~~L~~L~~~~~~~~V~~n~~y~p~~~~rD~~v~~~l~~~g--I~v~~~~~~~L~~p~~i~~~~g~~~~~f~~f 154 (681)
++ |++.++|.+|+++++|++|+++++|+|+++.||++|+++|++.| |+++++++++|++|++|.+..|++|++|++|
T Consensus 119 ~~-g~~~~~l~~l~~~~~~~~V~~~~~~~p~~~~rd~~v~~~l~~~gv~i~~~~~~~~~L~~p~~v~~~~g~~~~vft~F 197 (525)
T 2j4d_A 119 RS-GKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQF 197 (525)
T ss_dssp EE-SCHHHHHHHHHHHHTCSEEEEECCCSHHHHHHHHHHHHHHHTTCSSCEEEEECCSCSSCGGGSSSCGGGCCSSHHHH
T ss_pred Ee-CCHHHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHHHhcCCceEEEEecCCEEEccccccccCCCCcccHHHH
Confidence 86 79999999999999999999999999999999999999999999 8999999999999999998889999999999
Q ss_pred HHHHHcCCCCCCCCCCCCCCCCCCC----CCC-CCCCCCCccccchhchhhhhcCCCCcCHHHHHHHHHHHh-c-CcCCc
Q 005723 155 WEKCLSMPFDPDAPLLPPKRINSGD----MSR-CPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFI-N-GPLIE 227 (681)
Q Consensus 155 ~~~~~~~~~~p~~p~~~p~~~~~~~----i~~-~~~~~l~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl-~-~~l~~ 227 (681)
++++.+.. .+..|++.|..++... ... ..++++++.... ......|+|||++|+++|++|| + +++.+
T Consensus 198 ~r~~~~~~-~~~~p~~~p~~~~~~~~~~~~~~~~~l~~l~~~~~~-----~~~~~~~~~Ge~~A~~~L~~Fl~~~~~l~~ 271 (525)
T 2j4d_A 198 RKSVEAKC-SIRSSTRIPLSLGPTPSVDDWGDVPTLEKLGVEPQE-----VTRGMRFVGGESAGVGRVFEYFWKKDLLKV 271 (525)
T ss_dssp HHHHHHHC-CCCCCCCBCSCCCCCCCCSCCCCCCCTTTTTCCCCC-----CCSEEEECCSHHHHHHHHHHHHTTSCCGGG
T ss_pred HHHHHHhc-CCCCCCCCccccCCccccccccCCCCHHHcCCCccc-----ccccCCCCCcHHHHHHHHHHHHhhCchHhh
Confidence 99987632 1112233332222100 000 123334433210 0111248999999999999999 6 58999
Q ss_pred ccccccCC-CCCCCCCCchhhhCCCCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhCC-CCCC
Q 005723 228 YSKNRRKA-DSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP-YSHE 305 (681)
Q Consensus 228 Y~~~Rn~p-~~~~tS~LSPyL~fG~LSpReV~~~v~~~~~~~~~~~~~~~~~s~~~fl~eL~WREf~~~l~~~~p-~~~~ 305 (681)
|++.||.+ +.++||+|||||||||||||+|++++.+... . ....+++++|++||+|||||+++++++| .+..
T Consensus 272 Y~~~Rd~~~~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~~----~--~~~~~~~~~f~~EL~WREf~~~~~~~~~~~~~~ 345 (525)
T 2j4d_A 272 YKETRNGMLGPDYSTKFSPWLAFGCISPRFIYEEVQRYEK----E--RVANNSTYWVLFELIWRDYFRFLSIKCGNSLFH 345 (525)
T ss_dssp HHHHTTCCSSSTTSCCCHHHHHTTSSCHHHHHHHHHHHHH----H--TCCSHHHHHHHHHHHHHHHHHHHHHHHGGGGTS
T ss_pred hcccCCCccccccCCCcChhhcCCcCCHHHHHHHHHHHhh----c--ccccccHHHHHHHHHHHHHHHHHHHHcCchhhh
Confidence 99999986 6789999999999999999999999976421 1 1234678899999999999999988775 3322
Q ss_pred CcccccccCCCCcCchhHHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHHHHHHhhccCCCchHHHHHHHHhccccc
Q 005723 306 RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDAD 385 (681)
Q Consensus 306 ~~~~~~~~~~pW~~d~~~~~aW~~G~TG~P~VDAaMRqL~~TGwmHnr~Rm~vAsfl~k~L~idWr~G~~~F~~~LlD~D 385 (681)
.+... ...++|..+++.|++|++|+|||||||||||||++|||||||+||||||||||+|+||||+|++||+++|||||
T Consensus 346 ~~~~~-~~~~~w~~~~~~~~aW~~G~TG~P~VDAaMrqL~~tG~mHnr~Rm~vAsfL~k~L~idWr~G~~~F~~~LiD~D 424 (525)
T 2j4d_A 346 LGGPR-NVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYD 424 (525)
T ss_dssp TTTTT-TCCCCCBCCHHHHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCBCHHHHHHHHHHHCTTCC
T ss_pred ccCch-hhcCCCCCCHHHHHHHHcCCCCChHHHHHHHHHHHHCCcCHHHHHHHHHHHHHhcCCCcHHHHHHHHHhccccc
Confidence 22122 35688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccchhhhhcCCCCCCCcccccCccccccccCCchhhHHhhchhccCCCCCcccCCCCCChhHHHHhCCccCCCCCC
Q 005723 386 LESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPF 465 (681)
Q Consensus 386 ~a~n~g~Wqw~aG~g~d~~~~~RifNP~~q~~k~Dp~G~yIr~wvPeL~~~p~~~ih~pw~~~~~~~~~~g~~~~~~YP~ 465 (681)
+++|+|||||+||+|+|+.| ||||||++|++||||+|+|||||||||+++|.++||+||+++ .++|.+|.+||.
T Consensus 425 ~a~n~g~WQw~aG~g~D~~~-~RifNP~~q~kk~Dp~G~YIrrwvPEL~~~p~~~ih~Pw~~~-----~~~~~~g~~Yp~ 498 (525)
T 2j4d_A 425 PCSNYGNWTYGAGVGNDPRE-DRYFSIPKQAQNYDPEGEYVAFWLQQLRRLPKEKRHWPGRLM-----YMDTVVPLKHGN 498 (525)
T ss_dssp HHHHHHHHHHHHTCSSCGGG-CCCCCHHHHHHHHCTTCHHHHHHSGGGTTSCTTTTTSCHHHH-----TCCCSSCCSCCC
T ss_pred hhcChHHHHhhcCCCCCccc-cccCCHHHHhhhcCCCchhHHHhChhhhcCChhcccCCccCc-----ccccccCCCCCC
Confidence 99999999999999999998 799999999999999999999999999999999999999874 478999999999
Q ss_pred CCcCHHHHHHHHHHHHH
Q 005723 466 PIVRIDAAKCRLDEALS 482 (681)
Q Consensus 466 Pivd~~~~~~~~~~~~~ 482 (681)
||||++++|++.+++..
T Consensus 499 Pi~~~~~~~~~~~~~~~ 515 (525)
T 2j4d_A 499 GPMAGGSKSGGGFRGSH 515 (525)
T ss_dssp -----------------
T ss_pred Ccccchhhhhccchhhh
Confidence 99999999998887664
No 10
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=100.00 E-value=2.7e-108 Score=907.13 Aligned_cols=417 Identities=28% Similarity=0.464 Sum_probs=374.4
Q ss_pred CeEEEEEcCCCCCCCCHHHHHHHHcCCeEEEEEEcCCCCCCCCCchhhHHHHHHhHHHHHHHHHhCCCceEEEeCCChHH
Q 005723 5 GCSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRSTDSVS 84 (681)
Q Consensus 5 ~~~LvWFRrDLRl~DN~AL~aA~~~~~vlpVfI~dP~~~~~~~~~r~~r~FL~esL~dL~~~L~~~G~~L~v~~~g~~~~ 84 (681)
+.+|||||||||++||+||.+|++.++|+||||+||.++. . +..+.+||++||++|+++|+++|++|+++. |++.+
T Consensus 2 ~~~l~WfrrDlRl~Dn~aL~~A~~~~~v~~vfi~d~~~~~--~-~~~r~~fl~~sL~~l~~~L~~~g~~l~~~~-g~~~~ 77 (420)
T 2j07_A 2 GPLLVWHRGDLRLHDHPALLEALARGPVVGLVVLDPNNLK--T-TPRRRAWFLENVRALREAYRARGGALWVLE-GLPWE 77 (420)
T ss_dssp CCEEEEESSCCCSTTCHHHHHHHTTSCEEEEEEECHHHHS--S-CHHHHHHHHHHHHHHHHHHHHTTCCEEEEE-SCHHH
T ss_pred ceEEEEeCCCCCccccHHHHHHHhCCCEEEEEEECCcccc--C-CHHHHHHHHHHHHHHHHHHHHCCCeEEEEe-CCHHH
Confidence 3689999999999999999999976799999999998664 3 666777999999999999999999999986 79999
Q ss_pred HHHHHHHHcCCCEEEEecccChhhHHHHHHHHHHHHhCCeEEEEecCCeeeCCcccccccCCcccchHHHHHHHHcCCCC
Q 005723 85 SLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCLSMPFD 164 (681)
Q Consensus 85 ~L~~L~~~~~~~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~~g~~~~~f~~f~~~~~~~~~~ 164 (681)
+|.+|+++++|+.|++|++|+|++..||++|+++| ||+++++++++|++|++ |++|.+|++|++++. . +.
T Consensus 78 ~l~~l~~~~~~~~v~~~~~~~~~~~~rd~~v~~~l---~i~~~~~~~~~l~~~~~-----~~~~~~~t~f~k~~~-~-~~ 147 (420)
T 2j07_A 78 KVPEAARRLKAKAVYALTSHTPYGRYRDGRVREAL---PVPLHLLPAPHLLPPDL-----PRAYRVYTPFSRLYR-G-AA 147 (420)
T ss_dssp HHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC---SSCEEEECCCCSSCTTC-----SSCCSSHHHHHTTCC-C-CC
T ss_pred HHHHHHHHcCCCEEEEecccChhHHHHHHHHHHHc---CCeEEEeCCCEEEccCC-----CCccccccHHHHHHh-h-cc
Confidence 99999999999999999999999999999999988 99999999999999987 789999999999876 3 22
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCccccchhchhhhhcCCCCcCHHHHHHHHHHHhcCcCCcccccccCCCCCCCCCCc
Q 005723 165 PDAPLLPPKRINSGDMSRCPSDTLVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS 244 (681)
Q Consensus 165 p~~p~~~p~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~gGe~~A~~~L~~Fl~~~l~~Y~~~Rn~p~~~~tS~LS 244 (681)
.|.+.|..+. + ++++..+.. . ......|+|||++|+++|++|+++++.+|++.||.|+.++||+||
T Consensus 148 --~p~~~p~~~~---~---p~~~~~l~~-~-----~~~~~~~~~Ge~~A~~~L~~Fl~~~l~~Y~~~rd~p~~~~tS~LS 213 (420)
T 2j07_A 148 --PPLPPPEALP---K---GPEEGEIPR-E-----DPGLPLPEPGEEAALAGLRAFLEAKLPRYAEERDRLDGEGGSRLS 213 (420)
T ss_dssp --CCCCCCSSCC---C---CCCCCCCCC-C-----CCSSCCCCCSHHHHHHHHHHHHHHTGGGHHHHTTCTTCTTSCCCH
T ss_pred --CCCCCccccC---C---CCccccCCC-c-----ccccccCCCcHHHHHHHHHHHHHHHHhhhhhccCCCCccCCCCcc
Confidence 2233332221 1 111111211 0 011235899999999999999999999999999999999999999
Q ss_pred hhhhCCCCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccccCCCCcCchhHH
Q 005723 245 PHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYF 324 (681)
Q Consensus 245 PyL~fG~LSpReV~~~v~~~~~~~~~~~~~~~~~s~~~fl~eL~WREf~~~l~~~~p~~~~~~~~~~~~~~pW~~d~~~~ 324 (681)
|||||||||||+|++++.+.. .++++.|++||+|||||+++++++|.+...++.+.++.++|..|++.|
T Consensus 214 pyL~~G~lSpr~v~~~~~~~~-----------~~~~~~f~~eL~WREf~~~~~~~~p~~~~~~~~~~~~~l~w~~d~~~~ 282 (420)
T 2j07_A 214 PYFALGVLSPRLAAWEAERRG-----------GEGARKWVAELLWRDFSYHLLYHFPWMAERPLDPRFQAFPWQEDEALF 282 (420)
T ss_dssp HHHHTTSSCHHHHHHHHHHHC-----------SHHHHHHHHHHHHHHHHHHHHHHCGGGGTSCSSGGGTTCCCCCCHHHH
T ss_pred hhhcCCccCHHHHHHHHHHHh-----------ccCHHHHHHHHHHHHHHHHHHHhCCcccccccchhhhcCCcccCHHHH
Confidence 999999999999999987531 347888999999999999999999998888888888889999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHHHHHHhhccCCCchHHHHHHHHhcccccCCCCccchhhhhcCCCCCC
Q 005723 325 KAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 404 (681)
Q Consensus 325 ~aW~~G~TG~P~VDAaMRqL~~TGwmHnr~Rm~vAsfl~k~L~idWr~G~~~F~~~LlD~D~a~n~g~Wqw~aG~g~d~~ 404 (681)
++|++|+|||||||||||||++|||||||+||||||||||+|+|||++|++||+++|||||+++|+|||||+||+|+|++
T Consensus 283 ~~w~~G~TG~P~vDAaMrqL~~tG~mHnr~Rm~vasfl~k~L~idWr~g~~~F~~~llD~d~a~n~g~wqw~aG~g~d~~ 362 (420)
T 2j07_A 283 QAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAA 362 (420)
T ss_dssp HHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHTTSSGGGC
T ss_pred HHHHcCCCCcHhHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCCCChHHHHHHHHHhhcCCccccHHHHHHHHccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCccccccccCCchhhHHhhchhccCCCCCcccCCCCCChhHHHHhCCccCCCCCCCCcCHHHHHHHHHHHHHHH
Q 005723 405 AFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPFPIVRIDAAKCRLDEALSEM 484 (681)
Q Consensus 405 ~~~RifNP~~q~~k~Dp~G~yIr~wvPeL~~~p~~~ih~pw~~~~~~~~~~g~~~~~~YP~Pivd~~~~~~~~~~~~~~~ 484 (681)
||||||||++|++||||+|+|||||||||+++| ||.|||||+++|++++++|+++
T Consensus 363 pyfR~fNp~~q~~kfDp~g~yir~w~pel~~~p-------------------------YP~Pivd~~~~r~~a~~~~~~~ 417 (420)
T 2j07_A 363 PYFRVFNPVLQGERHDPEGRWLKRWAPEYPSYA-------------------------PKDPVVDLEEARRRYLRLARDL 417 (420)
T ss_dssp CTTCCCCHHHHHHHHSTTSHHHHHHCTTCSSSS-------------------------CSSCSSCHHHHHHHHHHHHHHH
T ss_pred CCceeeCHHHHHHHhCCCchhHHHhChhhcCCC-------------------------CCCCccCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998 9999999999999999999776
Q ss_pred H
Q 005723 485 W 485 (681)
Q Consensus 485 ~ 485 (681)
.
T Consensus 418 ~ 418 (420)
T 2j07_A 418 A 418 (420)
T ss_dssp H
T ss_pred h
Confidence 4
No 11
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=100.00 E-value=9.5e-91 Score=780.42 Aligned_cols=414 Identities=20% Similarity=0.218 Sum_probs=329.5
Q ss_pred CCCeEEEEEcCCCCCCCCHHHHHHHH----cC-CeEEEEEEcCCCCCCCCCchhhHHHHHHhHHHHHHHHHhCCCceEEE
Q 005723 3 GRGCSIVWFRRDLRVEDNPALAAGVR----AG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTK 77 (681)
Q Consensus 3 ~~~~~LvWFRrDLRl~DN~AL~aA~~----~~-~vlpVfI~dP~~~~~~~~~r~~r~FL~esL~dL~~~L~~~G~~L~v~ 77 (681)
.|+++||||||||||+||+||.+|++ .+ +|+||||+||.++. ...+..+.+||++||.+|+++|+++|++|+|+
T Consensus 36 ~~~~vlvWFRrDLRl~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~-~~~~~~r~~FL~~sL~dL~~~L~~lG~~L~v~ 114 (506)
T 3umv_A 36 PGGPVVYWMLRDQRLADNWALLHAAGLAAASASPLAVAFALFPRPFL-LSARRRQLGFLLRGLRRLAADAAARHLPFFLF 114 (506)
T ss_dssp TTSCEEEEESSCCCSTTCHHHHHHHHHHHHHTCCEEEEEECCCTTCG-GGCCHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEEeCCCcchhhcHHHHHHHHhhhhcCCCEEEEEeccchhhc-cCCCHHHHHHHHHHHHHHHHHHHHcCCceEEE
Confidence 35789999999999999999999986 24 89999999998542 23466667799999999999999999999998
Q ss_pred eCCChHHHHHHHHHHcCCCEEEEecccChhhHHHHHHHHHHHH--hCCeEEEEecCCeeeCCcccccccCCcccchHHHH
Q 005723 78 RSTDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALT--AQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFW 155 (681)
Q Consensus 78 ~~g~~~~~L~~L~~~~~~~~V~~n~~y~p~~~~rD~~v~~~l~--~~gI~v~~~~~~~L~~p~~i~~~~g~~~~~f~~f~ 155 (681)
+ |++.++ .+|+++++|++||++.++...++.||++|+++|+ +.||.+++|++++|++|+.+.++.|.++.+|.+++
T Consensus 115 ~-G~p~~v-~~L~~~~~a~~V~~d~ep~~~~r~rD~~V~~~l~~~~~gi~~~~~~~~~l~~p~~v~~~~~~~~~t~~~~~ 192 (506)
T 3umv_A 115 T-GGPAEI-PALVQRLGASTLVADFSPLRPVREALDAVVGDLRREAPGVAVHQVDAHNVVPVWTASAKMEYSAKTFRGKV 192 (506)
T ss_dssp S-SCTTHH-HHHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHCTTSEEEEECCSCSSCHHHHCSSCCSSHHHHHHHH
T ss_pred e-cChHHH-HHHHHhcCCCEEEeccChhHHHHHHHHHHHHHHhhccCCeEEEEeCCcEEECcccccCCCCCCccCHHHHH
Confidence 6 889999 9999999999999976555555588999999997 78999999999999999999887776665665555
Q ss_pred HHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccch---hchhhhhc-CCCCcCHHHHHHHH----HHHhcCcCCc
Q 005723 156 EKCLSMPFDPDAPLLPPKRINSGDMSRCPSDTLVFEDESE---KGSNALLA-RAWSPGWSNADKAL----TTFINGPLIE 227 (681)
Q Consensus 156 ~~~~~~~~~p~~p~~~p~~~~~~~i~~~~~~~l~~~~~~~---~~~~~~~~-~~~~gGe~~A~~~L----~~Fl~~~l~~ 227 (681)
.+.+..++.+.+.++++.... ...+ ..+.+..... ........ ..|+|||++|+++| +.|+++++.+
T Consensus 193 ~~~~~~~~~~~p~~~~~~~~~-~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~Ge~~A~~~L~~~~~~Fl~~~l~~ 267 (506)
T 3umv_A 193 SKVMDEYLVEFPELPAVVPWD-REQP----EGVDWDALIARVCSEAENVPEIDWCEPGEEAAIEALLGSKDGFLTKRIKS 267 (506)
T ss_dssp HTTHHHHSCCCCCCCCCCCCC-SCCC----CCCCHHHHHHHHHHTSCCCCCCCSSCCSHHHHHHHHHCTTTCHHHHTGGG
T ss_pred HHhccccccCCCCCCCccccc-cccc----cccChhhhhhhhccccccccccCCCCCCHHHHHHHHHhhHHHHHHhHHhh
Confidence 544332222211111111000 0000 0011110000 00000111 23689999999999 9999999999
Q ss_pred ccccccCCCC-CCCCCCchhhhCCCCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHHHHH-HHHHHHHHhCCCCCC
Q 005723 228 YSKNRRKADS-ATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLR-EYSRYMSFNHPYSHE 305 (681)
Q Consensus 228 Y~~~Rn~p~~-~~tS~LSPyL~fG~LSpReV~~~v~~~~~~~~~~~~~~~~~s~~~fl~eL~WR-Ef~~~l~~~~p~~~~ 305 (681)
|++.||.|.. ++||+|||||+|||||||+|++++.+... ...++++.|++||+|| |||+++++++|.+..
T Consensus 268 Y~~~Rd~p~~~~~tS~LSPyL~~G~lS~r~v~~~~~~~~~--------~~~~~~~~f~~eL~WRREf~~~~~~~~p~~~~ 339 (506)
T 3umv_A 268 YETDRNDPTKPRALSGLSPYLHFGHISAQRCALEAKKCRH--------LSPKSVDAFLEELVVRRELADNFCYYQPQYDS 339 (506)
T ss_dssp HHHHTTCTTCGGGSCCCHHHHHHTSSCHHHHHHHHHHHGG--------GSHHHHHHHHHHHTHHHHHHHHHHHHCTTTTS
T ss_pred hccccCCccccCCCccCCHHHhCCCcCHHHHHHHHHHHHh--------hccccHHHHHHHHHHhHHHHHHHHHhCcchhh
Confidence 9999999988 89999999999999999999999876531 1346789999999996 999999999998753
Q ss_pred CcccccccCCCCcC--------ch-h---HHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHHHHHHhhccCCCchHH
Q 005723 306 RPLLGHLKFFSWVV--------DE-G---YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWG 373 (681)
Q Consensus 306 ~~~~~~~~~~pW~~--------d~-~---~~~aW~~G~TG~P~VDAaMRqL~~TGwmHnr~Rm~vAsfl~k~L~idWr~G 373 (681)
. ...++|.. |. + .|++|++|+|||||||||||||++|||||||+||||| |+| |||++|
T Consensus 340 ~-----~~~~~w~~~~l~~~~~d~~~~~~~~~~w~~G~TG~p~vDA~mrqL~~tG~mHnr~Rm~~a----k~l-l~W~~g 409 (506)
T 3umv_A 340 L-----SGAWEWARKTLMDHAADKREHIYTREQLENAKTHDPLWNASQLEMVHHGKMHGFMRMYWA----KKI-LEWTSG 409 (506)
T ss_dssp G-----GGSCHHHHHHHHHTTTSCCSCCCCHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHH----HHH-HHTSSS
T ss_pred h-----hccchhhhhhhhhhcccchhhhccHHHHHcCCCCCHHHHHHHHHHHHhCchhHHHHHHHH----Hhh-ccCCCC
Confidence 2 23456742 22 2 4999999999999999999999999999999999997 888 999999
Q ss_pred HH-------HHHHh-cccccCCCCccchhhhh-cC---CCCCCCcc---cccCccccccccCCch--hhHHhhchhccCC
Q 005723 374 MK-------YFWDT-LLDADLESDALGWQYIS-GT---IPDGRAFD---RIDNPQFEGYKFDPNG--EYVRRWLPELARL 436 (681)
Q Consensus 374 ~~-------~F~~~-LlD~D~a~n~g~Wqw~a-G~---g~d~~~~~---RifNP~~q~~k~Dp~G--~yIr~wvPeL~~~ 436 (681)
++ ||+++ |||||+++|++||||+| |+ |+|.+||| |||||++|++||||+| +|||+|||||+++
T Consensus 410 ~~~~~~~a~~f~~~~llD~d~~~n~~~wqw~a~G~~~~g~~~~p~fg~iR~~np~~q~~k~Dp~gyi~yir~wvpel~~~ 489 (506)
T 3umv_A 410 PEEALSTAIYLNDKYEIDGRDPSGYVGCMWSICGLHDQGWKERPVFGKIRYMNYAGCKRKFDVDAYISYVKRLAGQSKKR 489 (506)
T ss_dssp HHHHHHHHHHHHHHHCTTCSSHHHHHHHHHHHHCTTSCCCCCBTTTBTSCCCCHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCcccCccccccceeEEecCCCCCCCccccccCcceeECHHHHHHHhCCCchHHHHHHhCHHhcCC
Confidence 99 99996 99999999999999999 65 88899998 9999999999999999 9999999999999
Q ss_pred CCCccc
Q 005723 437 PTEWIH 442 (681)
Q Consensus 437 p~~~ih 442 (681)
|++--+
T Consensus 490 ~~~~~~ 495 (506)
T 3umv_A 490 NAEESP 495 (506)
T ss_dssp C-----
T ss_pred Cccccc
Confidence 987544
No 12
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=100.00 E-value=1.2e-86 Score=747.55 Aligned_cols=401 Identities=22% Similarity=0.230 Sum_probs=313.4
Q ss_pred CeEEEEEcCCCCCCCCHHHHHHHHc-----CCeEEEEEEcCCCCCCCCCchhhHHHHHHhHHHHHHHHHhCCCceEEEeC
Q 005723 5 GCSIVWFRRDLRVEDNPALAAGVRA-----GAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRS 79 (681)
Q Consensus 5 ~~~LvWFRrDLRl~DN~AL~aA~~~-----~~vlpVfI~dP~~~~~~~~~r~~r~FL~esL~dL~~~L~~~G~~L~v~~~ 79 (681)
+++|||||||||++||+||.+|++. .+|+||||+||.++. .+..+.+||++||++|+++|+++|++|+++.
T Consensus 37 g~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~---~~~~r~~Fl~~sL~~L~~~L~~~G~~L~v~~- 112 (482)
T 2xry_A 37 GPVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLE---AGIRQYEFMLKGLQELEVSLSRKKIPSFFLR- 112 (482)
T ss_dssp SCEEEECSSCCCSSSCHHHHHHHHHHHHHTSCEEEEEEECTTGGG---SCHHHHHHHHHHHHHHHHHHHHTTCCEEEEE-
T ss_pred CcEEEEecCCCCccccHHHHHHHHHHHHcCCcEEEEEEeChhhhc---cCHHHHHHHHHHHHHHHHHHHHcCCcEEEEe-
Confidence 3889999999999999999999852 489999999998653 4566677999999999999999999999986
Q ss_pred CChHHHHHHHHHHcCCCEEEEecccChhhHHHHHHHHHHHHhCCeEEEEecCCeeeCCcccccccCCcccchHHHHHHHH
Q 005723 80 TDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDVNDAQGQPFATFAAFWEKCL 159 (681)
Q Consensus 80 g~~~~~L~~L~~~~~~~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~~~~~~L~~p~~i~~~~g~~~~~f~~f~~~~~ 159 (681)
|++.++|.+|+++++|++|+++++|++.+.+||+++++.| ||+++++++++|++|+++.++.+ |++|+.| +++.
T Consensus 113 g~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~~~~~v~~~l---gi~~~~~~~~~l~~~~~~~~~~~--~~v~tf~-~~~~ 186 (482)
T 2xry_A 113 GDPGEKISRFVKDYNAGTLVTDFSPLRIKNQWIEKVISGI---SIPFFEVDAHNVVPCWEASQKHE--YAAHTFR-PKLY 186 (482)
T ss_dssp SCHHHHHHHHHHHTTCSEEEEECCCSHHHHHHHHHHHHHC---CSCEEEECCSSSSCHHHHCSSCC--SSHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHc---CCEEEEEeCCEEccccccccCCC--Cceecch-HHHH
Confidence 7999999999999999999999999999999998887655 99999999999999999877654 7888744 3333
Q ss_pred c---CCCCCCC---CCCCCCCCCC-CCCCCCCCCCCCccccchhch-------hhhhcC--CCCcCHHHHHHHHHHHhcC
Q 005723 160 S---MPFDPDA---PLLPPKRINS-GDMSRCPSDTLVFEDESEKGS-------NALLAR--AWSPGWSNADKALTTFING 223 (681)
Q Consensus 160 ~---~~~~p~~---p~~~p~~~~~-~~i~~~~~~~l~~~~~~~~~~-------~~~~~~--~~~gGe~~A~~~L~~Fl~~ 223 (681)
+ ..+++.+ |.+.|..+++ ..++ ..++.+......+... .....+ .|+|||++|+++|++|+++
T Consensus 187 ~~~~~~~~~~p~~~p~~~~~~lp~~~~~~-~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Ge~~A~~~L~~Fl~~ 265 (482)
T 2xry_A 187 ALLPEFLEEFPELEPNSVTPELSAGAGMV-ETLSDVLETGVKALLPERALLKNKDPLFEPWHFEPGEKAAKKVMESFIAD 265 (482)
T ss_dssp HHHHHHCCCCCCCCCCSSCCC----------CHHHHHHHHHHHHGGGCCBCTTSCBCCCTTSCCCSHHHHHHHHHHHHHH
T ss_pred HHHHhhccccCCCCCCCCccccCCccchh-hhhhhhcccCCCCCcchhhhccccccccccCCCCCcHHHHHHHHHHHHHH
Confidence 2 1122211 1111111110 0000 0000010000000000 000001 5899999999999999999
Q ss_pred cCCcccccccCCCCCCCCCCchhhhCCCCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHHH-HHHHHHHHHHhCCC
Q 005723 224 PLIEYSKNRRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIG-LREYSRYMSFNHPY 302 (681)
Q Consensus 224 ~l~~Y~~~Rn~p~~~~tS~LSPyL~fG~LSpReV~~~v~~~~~~~~~~~~~~~~~s~~~fl~eL~-WREf~~~l~~~~p~ 302 (681)
++.+|++.||.|..++||+|||||+|||||||+|++++.+.. . ..++++.|++||+ ||||++++++++|.
T Consensus 266 ~l~~Y~~~Rd~p~~~~tS~LSPyL~~G~LSpR~v~~~~~~~~------~---~~~~~e~fl~ELi~WREf~~~~~~~~P~ 336 (482)
T 2xry_A 266 RLDSYGALRNDPTKNMLSNLSPYLHFGQISSQRVVLEVEKAE------S---NPGSKKAFLDEILIWKEISDNFCYYNPG 336 (482)
T ss_dssp THHHHHHHTTCTTSCCSCCCHHHHHTTSSCHHHHHHHHHHCC------C---CTTHHHHHHHHHTHHHHHHHHHHHHCTT
T ss_pred HHhhhccccCCCCccCCCCcCHHHhCCccCHHHHHHHHHHhh------c---ccccHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999999999999999999999999999999999999987531 1 3468899999997 99999999999998
Q ss_pred CCCCcccccccC--CC-CcCch-h---HHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHHHHHHhhccCCCc-hHHH
Q 005723 303 SHERPLLGHLKF--FS-WVVDE-G---YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPW-RWGM 374 (681)
Q Consensus 303 ~~~~~~~~~~~~--~p-W~~d~-~---~~~aW~~G~TG~P~VDAaMRqL~~TGwmHnr~Rm~vAsfl~k~L~idW-r~G~ 374 (681)
+...+....+.. ++ |..|+ + .|++|++|+|||||||||||||++|||||||+||||| |+| ||| +.|+
T Consensus 337 ~~~~~~~~~w~~~~~~~~~~d~~~~~~~~~aw~~G~TG~P~VDAaMrqL~~tG~mHnr~RM~va----k~L-idW~~~ge 411 (482)
T 2xry_A 337 YDGFESFPSWAKESLNAHRNDVRSHIYTLEEFEAGKTHDPLWNASQMELLSTGKMHGYTRMYWA----KKI-LEWSESPE 411 (482)
T ss_dssp TTSGGGSCHHHHHHHHHTTTSCCSCCCCHHHHHTTCSSCHHHHHHHHHHHHHSCCCHHHHHHHH----HHH-HHTSSSHH
T ss_pred ccccccchHHHhhhhhhcccCchhhhHHHHHHHhCCcCCHHHHHHHHHHHHhCccccHHHHHHH----ccc-CCCCchHH
Confidence 864332211100 01 22342 2 6999999999999999999999999999999999997 667 999 8999
Q ss_pred HHHHHh-------cccccCCCCccchhhhhcCCCC----CCCcc---cccCccccccccCCchhhHHhhch
Q 005723 375 KYFWDT-------LLDADLESDALGWQYISGTIPD----GRAFD---RIDNPQFEGYKFDPNGEYVRRWLP 431 (681)
Q Consensus 375 ~~F~~~-------LlD~D~a~n~g~Wqw~aG~g~d----~~~~~---RifNP~~q~~k~Dp~G~yIr~wvP 431 (681)
+||+++ |||||+|+|+|||||+||++.| .+||| |||||++|++||||+| |||||||
T Consensus 412 ~~f~~~l~Lnd~y~iD~d~ann~ggwqw~agG~~~~~~~~~p~fg~~R~fnp~~q~~kfD~~~-yir~w~~ 481 (482)
T 2xry_A 412 KALEIAICLNDRYELDGRDPNGYAGIAWSIGGVHDRAWGEREVTGKIRYMSYEGCKRKFDVKL-YIEKYSA 481 (482)
T ss_dssp HHHHHHHHHHHHHCTTCSSHHHHHHHHHHHHCTTSCCCCCBTTTBTSCCCCHHHHHHHSCHHH-HHHHTC-
T ss_pred HHHHHHHHhcCceeccCCCccchhHhhhhhcCCCCCCcccccccccceeechhHhhhhcCHHH-HHHHHhc
Confidence 999999 4999999999999999984333 36888 9999999999999998 9999985
No 13
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=100.00 E-value=2.5e-68 Score=591.98 Aligned_cols=424 Identities=16% Similarity=0.144 Sum_probs=331.2
Q ss_pred eEEEEEcCCCCCCCCHHHHHHHHcCCeEEEEEEcCCCCC-CCCCchhhHHHHHHhHHHHHHHHHhCCCceEEEe------
Q 005723 6 CSIVWFRRDLRVEDNPALAAGVRAGAVIAVFIWAPEEEG-PYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKR------ 78 (681)
Q Consensus 6 ~~LvWFRrDLRl~DN~AL~aA~~~~~vlpVfI~dP~~~~-~~~~~r~~r~FL~esL~dL~~~L~~~G~~L~v~~------ 78 (681)
++++|.--|.-..++++|..+- ....+|++.+-..+. ....++.+.+|++.||++|+++|+++|.+|++++
T Consensus 16 ~~~~~ilgdQL~~~~~~~~~~~--~~~~~~~~~E~~~~~~~~~~h~~Ki~~l~saMr~fa~~L~~~G~~v~y~~~~~~~~ 93 (522)
T 3zxs_A 16 TRLILVLGDQLSDDLPALRAAD--PAADLVVMAEVMEEGTYVPHHPQKIALILAAMRKFARRLQERGFRVAYSRLDDPDT 93 (522)
T ss_dssp CCEEECCTTCCCTTCHHHHTCC--TTTCEEEEECCHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTTCCEEEECTTCTTC
T ss_pred heeEEeecccCCCccchhhhcC--CCCCEEEEEEechHhccCCcHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeccCccc
Confidence 4689999999999999996431 123356666544332 2334667778999999999999999999999876
Q ss_pred CCChHHHHHHHHHHcCCCEEEEecccChhhHHHHHHHHHHHHhCCeEEEEecCC-eeeCCccccc--ccCCcccchHHHH
Q 005723 79 STDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNAD-LLYEPWDVND--AQGQPFATFAAFW 155 (681)
Q Consensus 79 ~g~~~~~L~~L~~~~~~~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~~~~~-~L~~p~~i~~--~~g~~~~~f~~f~ 155 (681)
.|++.++|.+++++++++.|+++ +|.+..+|++|+++ ||+++.+++. .|++|+++.+ ..+++|++ ++||
T Consensus 94 ~g~~~~~L~~l~~~~~~~~v~~~---~P~e~r~~~~l~~~----gi~v~~~~~~~fL~~~~e~~~~~~~~k~~~m-e~FY 165 (522)
T 3zxs_A 94 GPSIGAELLRRAAETGAREAVAT---RPGDWRLIEALEAM----PLPVRFLPDDRFLCPADEFARWTEGRKQLRM-EWFY 165 (522)
T ss_dssp CSSHHHHHHHHHHHHTCCCEEEE---CCSCHHHHHHHHHS----SSCEEEECCCCSSSCHHHHHHHHTTCSSCCH-HHHH
T ss_pred cCCHHHHHHHHHHHcCCCEEEEe---CcchHHHHHHHHHc----CCcEEEeCCCCcccCHHHHHHhhcCCCCeEe-eHHH
Confidence 36789999999999999999999 89999999998744 9999999986 7999999987 56788877 5999
Q ss_pred HHHHcC---CCCCCCCCC------------CCCCCCCCCCCCCCCCCC-----C-ccccchhchhhhhcCCCCcCHHHHH
Q 005723 156 EKCLSM---PFDPDAPLL------------PPKRINSGDMSRCPSDTL-----V-FEDESEKGSNALLARAWSPGWSNAD 214 (681)
Q Consensus 156 ~~~~~~---~~~p~~p~~------------~p~~~~~~~i~~~~~~~l-----~-~~~~~~~~~~~~~~~~~~gGe~~A~ 214 (681)
+.+++. .|+...|.. .|..+.....+....+++ . ++..+..+.+....+.|++||.+|+
T Consensus 166 R~~Rkr~~iLm~~~~P~GG~WnfD~~NRk~~p~~~~~p~~~~~~~d~~~~~v~~~v~~~~~~~~G~~~~~~~~~ge~~A~ 245 (522)
T 3zxs_A 166 REMRRRTGLLMEGDEPAGGKWNFDTENRKPAAPDLLRPRPLRFEPDAEVRAVLDLVEARFPRHFGRLRPFHWATDRAEAL 245 (522)
T ss_dssp HHHHHHHTTTEETTEEGGGSSCCGGGSCCCCCCCTTCCCCCCCCCCHHHHHHHHHHHHHCTTSSSCCCSCCCCCSHHHHH
T ss_pred HHHHHHhCcCCCCCCCCCCccCccccccccCCCCCCCCCCCCCCCchhHHHHHHHHHHhccCCcCccccCCCCCCHHHHH
Confidence 987642 233212221 111111000000000000 0 0001111122223456999999999
Q ss_pred HHHHHHhcCcCCcccccccCCCCC----CCCCCchhhhCCCCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHHH-H
Q 005723 215 KALTTFINGPLIEYSKNRRKADSA----TTSFLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIG-L 289 (681)
Q Consensus 215 ~~L~~Fl~~~l~~Y~~~Rn~p~~~----~tS~LSPyL~fG~LSpReV~~~v~~~~~~~~~~~~~~~~~s~~~fl~eL~-W 289 (681)
++|++|+++++.+|++.||.|+.+ +||+|||||+||+||||+|++++.+.+. ....+.+++++||+||+ |
T Consensus 246 ~~L~~Fl~~rl~~Y~~~rD~~~~~~~~~~tS~LSpyL~~G~LSpRev~~~~~~~~~-----~~~~~~~~~e~firellgW 320 (522)
T 3zxs_A 246 RALDHFIRESLPRFGDEQDAMLADDPFLSHALLSSSMNLGLLGPMEVCRRAETEWR-----EGRAPLNAVEGFIRQILGW 320 (522)
T ss_dssp HHHHHHHHHTGGGTTTTTTCCBTTBSSTTCCCCHHHHHHTSSCHHHHHHHHHHHHH-----TTSSCHHHHHHHHHHHHTH
T ss_pred HHHHHHHHhhhhhhhhhccCcccCCCCCCcccccHHHhCCCcCHHHHHHHHHHHHH-----hcCCchhhHHHHHHHHHHH
Confidence 999999999999999999999876 5999999999999999999999886541 22344568899999996 9
Q ss_pred HHHHHHHHHhC-CCCCCCcccccccCCCCcCchhHHHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHHHHHHhhccCC
Q 005723 290 REYSRYMSFNH-PYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQL 368 (681)
Q Consensus 290 REf~~~l~~~~-p~~~~~~~~~~~~~~pW~~d~~~~~aW~~G~TG~P~VDAaMRqL~~TGwmHnr~Rm~vAsfl~k~L~i 368 (681)
|||++++++++ |.+...++....+.+| ++|++|+|||||||||||||++|||||||+||||||||||+|+|
T Consensus 321 REF~~~l~~~~~P~~~~~n~~~~~~~l~--------~~~w~G~TG~P~VDA~MRqL~~TGwmHnr~RmmVasfl~k~L~i 392 (522)
T 3zxs_A 321 REYVRGIWTLSGPDYIRSNGLGHSAALP--------PLYWGKPTRMACLSAAVAQTRDLAYAHHIQRLMVTGNFALLAGV 392 (522)
T ss_dssp HHHHHHHHHHHGGGGGGCCTTCCCBCCC--------GGGGTCCCSCHHHHHHHHHHHHHSCCCHHHHHHTHHHHHHHTTB
T ss_pred HHHHHHHHHHhCccccccccccccccch--------HHHhcCCCCCHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHcCC
Confidence 99999999885 8776555544433333 45669999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhcccc-c---CCCCccchhhhhcCCCCCCCcccccCccccccccCCchhhHHhhchhccCCCCCcccCC
Q 005723 369 PWRWGMKYFWDTLLDA-D---LESDALGWQYISGTIPDGRAFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHP 444 (681)
Q Consensus 369 dWr~G~~~F~~~LlD~-D---~a~n~g~Wqw~aG~g~d~~~~~RifNP~~q~~k~Dp~G~yIr~wvPeL~~~p~~~ih~p 444 (681)
||++|++||+++|||| | .+|++|||||++|++++++|| ...|.||+|+ ++.+..-++.|
T Consensus 393 dWr~G~~wF~~~LiD~~~Wv~~~N~~Gm~q~a~Gg~~~~KPY-------------~~~~~yI~km----s~yc~~c~y~~ 455 (522)
T 3zxs_A 393 DPAEVHEWYLSVYIDALEWVEAPNTIGMSQFADHGLLGSKPY-------------VSSGAYIDRM----SDYCRGCAYAV 455 (522)
T ss_dssp CHHHHHHHHHHHCTTCCHHHHHHHHHTTTTCCSSSTTCSSCC-------------CCCHHHHHHH----CSCGGGSSSBT
T ss_pred ChHHHHHHHHHHhcchhhhhhccccccchheecCCccCCCCC-------------CCchHHHHHH----hccccCCccCc
Confidence 9999999999999999 4 567889999999999887775 6899999999 68999999999
Q ss_pred CCCChhHHHHhCCccCCCCCCCCcCHHHH
Q 005723 445 WNAPESVLQAAGIELGSNYPFPIVRIDAA 473 (681)
Q Consensus 445 w~~~~~~~~~~g~~~~~~YP~Pivd~~~~ 473 (681)
++...+ ..|.++..|...|..|.+.
T Consensus 456 ~~~~g~----~~cp~~~lYW~Fl~rh~~~ 480 (522)
T 3zxs_A 456 KDRTGP----RACPFNLLYWHFLNRHRAR 480 (522)
T ss_dssp TCSSST----TBCHHHHHHHHHHHHTHHH
T ss_pred cccCCC----ccCCCccchHHHHHHHHHH
Confidence 998764 6788889999999988764
No 14
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=73.84 E-value=29 Score=31.21 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=67.2
Q ss_pred CC-CCCCCHHHHHHHHc-----CCeEEEEEEcCCCCCCCCCchhhHHHHHHhHHHHHHHHHhCCCceEE---EeCCChHH
Q 005723 14 DL-RVEDNPALAAGVRA-----GAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVT---KRSTDSVS 84 (681)
Q Consensus 14 DL-Rl~DN~AL~aA~~~-----~~vlpVfI~dP~~~~~~~~~r~~r~FL~esL~dL~~~L~~~G~~L~v---~~~g~~~~ 84 (681)
|. --....||..|+.. ..|..|+|+++... . ......-..+.|.++.+.|++.|+++.+ ...|++.+
T Consensus 32 D~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~---~-~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~v~~G~~~~ 107 (155)
T 3dlo_A 32 DKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGR---T-KDEDIIEAKETLSWAVSIIRKEGAEGEEHLLVRGKEPPD 107 (155)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTT---S-CHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEESSSCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCc---c-cHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCCCHHH
Confidence 44 33344566666432 47999999875421 1 1111123456778888888989988643 23488999
Q ss_pred HHHHHHHHcCCCEEEEecc-cChhhH-HHHHHHHHHHHhCCeEEEEe
Q 005723 85 SLLEVVKATGATQLFFNHL-YDPLSL-VRDHRAKEALTAQGIAVRSF 129 (681)
Q Consensus 85 ~L~~L~~~~~~~~V~~n~~-y~p~~~-~rD~~v~~~l~~~gI~v~~~ 129 (681)
.|.+.+++.+++-|+.-.. ...... ..-....+.+....|+|..+
T Consensus 108 ~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 108 DIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVICI 154 (155)
T ss_dssp HHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHhCCCCEEEe
Confidence 9999999999999998532 121111 11122334455666766543
No 15
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=70.13 E-value=45 Score=29.21 Aligned_cols=127 Identities=12% Similarity=0.064 Sum_probs=67.2
Q ss_pred CCCCCeEEEEEcCCCCCCCCHHHHHHHHc-----CCeEEEEEEcCCCC-----CCCC---CchhhHHHHHHhHHHHHHHH
Q 005723 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRA-----GAVIAVFIWAPEEE-----GPYY---PGRVSRWWLKHSLSHLDSSL 67 (681)
Q Consensus 1 m~~~~~~LvWFRrDLRl~DN~AL~aA~~~-----~~vlpVfI~dP~~~-----~~~~---~~r~~r~FL~esL~dL~~~L 67 (681)
|...+++|+=. |.--....||..|++. ..+..|+|+++... .... ..........++.+.|++-+
T Consensus 3 m~~~~~ILv~v--D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (150)
T 3tnj_A 3 MSVYHHILLAV--DFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIG 80 (150)
T ss_dssp -CCCSEEEEEC--CCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCccceEEEEe--CCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 44444555433 5555556777776542 47889999886421 1000 01111223334444444444
Q ss_pred HhCCCc---eEEEeCCChHHHHHHHHHHcCCCEEEEecc-cChhhHHHHHHHHHHHHhCCeEEEEec
Q 005723 68 RSLGTS---LVTKRSTDSVSSLLEVVKATGATQLFFNHL-YDPLSLVRDHRAKEALTAQGIAVRSFN 130 (681)
Q Consensus 68 ~~~G~~---L~v~~~g~~~~~L~~L~~~~~~~~V~~n~~-y~p~~~~rD~~v~~~l~~~gI~v~~~~ 130 (681)
++.|++ ..+. .|++.+.|.+++++.+++-|+.-.. ........-....+.+...+|+|..+.
T Consensus 81 ~~~~~~~~~~~~~-~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~ 146 (150)
T 3tnj_A 81 NTLGIDPAHRWLV-WGEPREEIIRIAEQENVDLIVVGSHGRHGLALLLGSTANSVLHYAKCDVLAVR 146 (150)
T ss_dssp HHHTCCGGGEEEE-ESCHHHHHHHHHHHTTCSEEEEEEC--------CCCHHHHHHHHCSSEEEEEE
T ss_pred HHcCCCcceEEEe-cCCHHHHHHHHHHHcCCCEEEEecCCCCCcCeEecchHHHHHHhCCCCEEEEe
Confidence 555655 4554 4789999999999999999988632 222111111123445666778877654
No 16
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=67.01 E-value=25 Score=30.77 Aligned_cols=115 Identities=6% Similarity=-0.007 Sum_probs=67.4
Q ss_pred CCCCCCCHHHHHHHHc-----CCeEEEEEEcCCCCCCCCCc-------hhhHHHHHHhHHHHHHHHHhCCC-ce--EEEe
Q 005723 14 DLRVEDNPALAAGVRA-----GAVIAVFIWAPEEEGPYYPG-------RVSRWWLKHSLSHLDSSLRSLGT-SL--VTKR 78 (681)
Q Consensus 14 DLRl~DN~AL~aA~~~-----~~vlpVfI~dP~~~~~~~~~-------r~~r~FL~esL~dL~~~L~~~G~-~L--~v~~ 78 (681)
|.--....||..|++. ..+..|+|+++........+ .....-..+.|..+.+.+.+.|+ +. .+..
T Consensus 13 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~ 92 (146)
T 3s3t_A 13 DSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATTSAPNLKTEISY 92 (146)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEec
Confidence 4444445667666532 37888999887533211110 00111344667777788888888 54 4444
Q ss_pred CCChHHHHHH-HHHHcCCCEEEEecc-cChhhH-HHHHHHHHHHHhCCeEEEEe
Q 005723 79 STDSVSSLLE-VVKATGATQLFFNHL-YDPLSL-VRDHRAKEALTAQGIAVRSF 129 (681)
Q Consensus 79 ~g~~~~~L~~-L~~~~~~~~V~~n~~-y~p~~~-~rD~~v~~~l~~~gI~v~~~ 129 (681)
|++.+.|.+ .+++.+++-|+.-.. ...... ..-....+.+...+|+|..+
T Consensus 93 -g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 93 -GIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp -ECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEEEEE
T ss_pred -CChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCEEEe
Confidence 788999999 999999999998633 222111 11122344556667777553
No 17
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=64.62 E-value=46 Score=28.79 Aligned_cols=115 Identities=9% Similarity=0.036 Sum_probs=65.8
Q ss_pred CCCCC--CCHHHHHHHHc-----CCeEEEEEEcCCCCCC-C---CCc--hhhHHHHHHhHHHHHHHHHhCCCc-----eE
Q 005723 14 DLRVE--DNPALAAGVRA-----GAVIAVFIWAPEEEGP-Y---YPG--RVSRWWLKHSLSHLDSSLRSLGTS-----LV 75 (681)
Q Consensus 14 DLRl~--DN~AL~aA~~~-----~~vlpVfI~dP~~~~~-~---~~~--r~~r~FL~esL~dL~~~L~~~G~~-----L~ 75 (681)
|.--. ...||..|+.. ..+..|+|+++..... . ... ........+.++.|++.+++.|.+ ..
T Consensus 9 D~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~ 88 (143)
T 3fdx_A 9 DISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIPEDRMHFH 88 (143)
T ss_dssp CTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCCGGGEEEE
T ss_pred cCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCCCCceEEE
Confidence 44444 56677776532 3788999988642110 0 000 001123456777788878888753 34
Q ss_pred EEeCCChHHHHHHHHHHcCCCEEEEecccChhh-HHHHHHHHHHHHhCCeEEEEe
Q 005723 76 TKRSTDSVSSLLEVVKATGATQLFFNHLYDPLS-LVRDHRAKEALTAQGIAVRSF 129 (681)
Q Consensus 76 v~~~g~~~~~L~~L~~~~~~~~V~~n~~y~p~~-~~rD~~v~~~l~~~gI~v~~~ 129 (681)
+. .|++.+.|.+.+++.+++-|+.-..-.... ...-....+.+...+|+|..+
T Consensus 89 ~~-~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 89 VA-EGSPKDKILALAKSLPADLVIIASHRPDITTYLLGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp EE-ESCHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSCHHHHHHHHHCSSEEEEE
T ss_pred EE-ecChHHHHHHHHHHhCCCEEEEeCCCCCCeeeeeccHHHHHHHhCCCCEEEe
Confidence 44 478999999999999999999875422211 111122344556667777553
No 18
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=63.43 E-value=31 Score=30.09 Aligned_cols=88 Identities=10% Similarity=0.121 Sum_probs=55.4
Q ss_pred CCCCCCCHHHHHHHHc-----CCeEEEEEEcCCC-C-C-----CC-C---CchhhHHHHHHhHHHHHHHHHhCCCce---
Q 005723 14 DLRVEDNPALAAGVRA-----GAVIAVFIWAPEE-E-G-----PY-Y---PGRVSRWWLKHSLSHLDSSLRSLGTSL--- 74 (681)
Q Consensus 14 DLRl~DN~AL~aA~~~-----~~vlpVfI~dP~~-~-~-----~~-~---~~r~~r~FL~esL~dL~~~L~~~G~~L--- 74 (681)
|.--....||..|++. ..+..|+|+++.. . . .. . .......-..+.|..+.+.+++.|++.
T Consensus 10 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~ 89 (147)
T 3hgm_A 10 DGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATELGVPADKV 89 (147)
T ss_dssp CSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCccce
Confidence 3333344566666532 3788899987542 0 0 00 0 011111234567788888888888654
Q ss_pred --EEEeCCChHHHHHHHHHHcCCCEEEEec
Q 005723 75 --VTKRSTDSVSSLLEVVKATGATQLFFNH 102 (681)
Q Consensus 75 --~v~~~g~~~~~L~~L~~~~~~~~V~~n~ 102 (681)
.+. .|++.+.|.+.+++.+++-|+.-.
T Consensus 90 ~~~~~-~g~~~~~I~~~a~~~~~dliV~G~ 118 (147)
T 3hgm_A 90 RAFVK-GGRPSRTIVRFARKRECDLVVIGA 118 (147)
T ss_dssp EEEEE-ESCHHHHHHHHHHHTTCSEEEECS
T ss_pred EEEEe-cCCHHHHHHHHHHHhCCCEEEEeC
Confidence 334 478999999999999999999863
No 19
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=63.33 E-value=19 Score=35.89 Aligned_cols=98 Identities=19% Similarity=0.208 Sum_probs=51.9
Q ss_pred HHHHHHHHcC-CeEEEEEEcCCCCCCCCCchhhHHHHHHhHHHHHHHHHhCCCceEEEeC-C---ChHHHHHHHHHHcCC
Q 005723 21 PALAAGVRAG-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRS-T---DSVSSLLEVVKATGA 95 (681)
Q Consensus 21 ~AL~aA~~~~-~vlpVfI~dP~~~~~~~~~r~~r~FL~esL~dL~~~L~~~G~~L~v~~~-g---~~~~~L~~L~~~~~~ 95 (681)
-||..|.+.+ .|+.|+..-+.....+. |-...+..++..-+.+|++|++... + +..+.|.+++++.++
T Consensus 19 ~al~~l~~~G~eV~~L~~~~~~~~~s~~-------~h~~~~e~a~~~A~~LGIpl~~v~~~g~~~~e~e~l~~~l~~~~i 91 (237)
T 3rjz_A 19 YALYWAIKNRFSVKFLVTMVSENEESYM-------YHTINANLTDLQARALGIPLVKGFTQGEKEKEVEDLKRVLSGLKI 91 (237)
T ss_dssp HHHHHHHHTTCEEEEEEEEECC---------------CCSSSHHHHHHHHHTCCEEEEEC------CHHHHHHHHTTSCC
T ss_pred HHHHHHHHcCCeEEEEEEEcCCCCCccc-------cCCccHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHHhcCC
Confidence 3455566666 67777665443211100 1011123333344556999987652 1 235667778888899
Q ss_pred CEEEEecccChhhHHHHHHHHHHHHhCCeEEEE
Q 005723 96 TQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRS 128 (681)
Q Consensus 96 ~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~ 128 (681)
+.|++-.-...+.+. ++.+.|.+.|+....
T Consensus 92 ~~vv~Gdi~s~yqr~---r~e~vc~~~gl~~~~ 121 (237)
T 3rjz_A 92 QGIVAGALASKYQRK---RIEKVAKELGLEVYT 121 (237)
T ss_dssp SEEECC---CCSHHH---HHHHHHHHTTCEEEC
T ss_pred cEEEECCcchHHHHH---HHHHHHHHcCCEEEc
Confidence 999886444333333 455567777776544
No 20
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=57.73 E-value=88 Score=27.51 Aligned_cols=110 Identities=11% Similarity=0.018 Sum_probs=64.2
Q ss_pred CHHHHHHHHc-----CCeEEEEEEcCCCCCCCC--Cchh---hHHHHHHhHHHHHHHHHhCCCc-e--EEEeCCChHHHH
Q 005723 20 NPALAAGVRA-----GAVIAVFIWAPEEEGPYY--PGRV---SRWWLKHSLSHLDSSLRSLGTS-L--VTKRSTDSVSSL 86 (681)
Q Consensus 20 N~AL~aA~~~-----~~vlpVfI~dP~~~~~~~--~~r~---~r~FL~esL~dL~~~L~~~G~~-L--~v~~~g~~~~~L 86 (681)
..||..|++. ..+..|+|+++.....+. .... ...-..+.|..+.+.+++.|++ . .+...|++.+.|
T Consensus 31 ~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I 110 (156)
T 3fg9_A 31 ERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGVNQVEPLVYEGGDVDDVI 110 (156)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSEEEEEEECSCHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCCHHHHH
Confidence 4556655432 479999999875321111 0000 1113456677777888888883 4 444337899999
Q ss_pred HHH-HHHcCCCEEEEecc-cChhhHHHHHHHHHHHHhCCeEEEEe
Q 005723 87 LEV-VKATGATQLFFNHL-YDPLSLVRDHRAKEALTAQGIAVRSF 129 (681)
Q Consensus 87 ~~L-~~~~~~~~V~~n~~-y~p~~~~rD~~v~~~l~~~gI~v~~~ 129 (681)
.+. +++.+++-|+.-.. ........-....+.+...+|+|..+
T Consensus 111 ~~~~a~~~~~DlIV~G~~g~~~~~~~~Gs~~~~vl~~a~~PVlvV 155 (156)
T 3fg9_A 111 LEQVIPEFKPDLLVTGADTEFPHSKIAGAIGPRLARKAPISVIVV 155 (156)
T ss_dssp HHTHHHHHCCSEEEEETTCCCTTSSSCSCHHHHHHHHCSSEEEEE
T ss_pred HHHHHHhcCCCEEEECCCCCCccceeecchHHHHHHhCCCCEEEe
Confidence 998 99999999998643 22221111112234556667776543
No 21
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=56.67 E-value=54 Score=29.48 Aligned_cols=116 Identities=10% Similarity=0.030 Sum_probs=67.0
Q ss_pred CCCCCCCHHHHHHHHc-----CCeEEEEEEcCCCCC--C--C---------CCchh---hHHHHHHhHHHHHHHHHhCCC
Q 005723 14 DLRVEDNPALAAGVRA-----GAVIAVFIWAPEEEG--P--Y---------YPGRV---SRWWLKHSLSHLDSSLRSLGT 72 (681)
Q Consensus 14 DLRl~DN~AL~aA~~~-----~~vlpVfI~dP~~~~--~--~---------~~~r~---~r~FL~esL~dL~~~L~~~G~ 72 (681)
|.--....||..|+.. ..|..|+|+++.... . . ..... ...-..+.|..+.+.++..|+
T Consensus 13 D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 92 (170)
T 2dum_A 13 DFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKAEEVKRAFR 92 (170)
T ss_dssp CSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4444455677777653 268888888764210 0 0 00011 111234556677777777787
Q ss_pred ce----EEEeCCChHHHHHHHHHHcCCCEEEEecc-cChhh-HHHHHHHHHHHHhCCeEEEEec
Q 005723 73 SL----VTKRSTDSVSSLLEVVKATGATQLFFNHL-YDPLS-LVRDHRAKEALTAQGIAVRSFN 130 (681)
Q Consensus 73 ~L----~v~~~g~~~~~L~~L~~~~~~~~V~~n~~-y~p~~-~~rD~~v~~~l~~~gI~v~~~~ 130 (681)
+. .+. .|++.+.|.+++++.+++-|+.-.. ..... ...-....+.+...+|+|..+.
T Consensus 93 ~~~~~~~~~-~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv~ 155 (170)
T 2dum_A 93 AKNVRTIIR-FGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIK 155 (170)
T ss_dssp CSEEEEEEE-EECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEEC
T ss_pred ceeeeeEEe-cCChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEEc
Confidence 65 333 4789999999999999999998643 22211 1111223445566778887764
No 22
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=48.73 E-value=2.1e+02 Score=28.29 Aligned_cols=103 Identities=10% Similarity=0.014 Sum_probs=63.3
Q ss_pred CCeEEEEEEcCCCCCCC--CC----chhhHHHHHHhHHHHHHHHHhCCCc---eEEEeCCChHHHHHHHHHHcCCCEEEE
Q 005723 30 GAVIAVFIWAPEEEGPY--YP----GRVSRWWLKHSLSHLDSSLRSLGTS---LVTKRSTDSVSSLLEVVKATGATQLFF 100 (681)
Q Consensus 30 ~~vlpVfI~dP~~~~~~--~~----~r~~r~FL~esL~dL~~~L~~~G~~---L~v~~~g~~~~~L~~L~~~~~~~~V~~ 100 (681)
..+..|+|+++...... .+ .........+....|++-+++.|+. .++.. |++.+.|.+++++.+++-|+.
T Consensus 194 a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~-g~~~~~I~~~a~~~~~dLiV~ 272 (319)
T 3olq_A 194 PDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQHLIAMKELRQKFSIPEEKTHVKE-GLPEQVIPQVCEELNAGIVVL 272 (319)
T ss_dssp CCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEE-SCHHHHHHHHHHHTTEEEEEE
T ss_pred CeEEEEEeecCcchhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCcccEEEec-CCcHHHHHHHHHHhCCCEEEE
Confidence 47889999886532210 01 1111123344455566666777763 55554 789999999999999999888
Q ss_pred ecc-cChh-hHHHHHHHHHHHHhCCeEEEEecCCe
Q 005723 101 NHL-YDPL-SLVRDHRAKEALTAQGIAVRSFNADL 133 (681)
Q Consensus 101 n~~-y~p~-~~~rD~~v~~~l~~~gI~v~~~~~~~ 133 (681)
-.. -... ....-....+.+....|+|-.+....
T Consensus 273 G~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~~~~ 307 (319)
T 3olq_A 273 GILGRTGLSAAFLGNTAEQLIDHIKCDLLAIKPDG 307 (319)
T ss_dssp ECCSCCSTHHHHHHHHHHHHHTTCCSEEEEECCTT
T ss_pred eccCccCCccccccHHHHHHHhhCCCCEEEECCCC
Confidence 632 2222 22333445567778889888876543
No 23
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=48.37 E-value=1.6e+02 Score=29.05 Aligned_cols=99 Identities=11% Similarity=0.160 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHc----C-CeEEEEEEcCCCCCCCCCchhhHHHHHHhHHHHHHHHHhCCCce--EEEeCCChHHHHHHHH
Q 005723 18 EDNPALAAGVRA----G-AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSL--VTKRSTDSVSSLLEVV 90 (681)
Q Consensus 18 ~DN~AL~aA~~~----~-~vlpVfI~dP~~~~~~~~~r~~r~FL~esL~dL~~~L~~~G~~L--~v~~~g~~~~~L~~L~ 90 (681)
....||..|... + .+..|+|+++.. -.+.+.++.+.|++.|++. .+. .|++.+.|.+++
T Consensus 182 ~s~~al~~a~~la~~~~~~l~ll~v~~~~~-------------~~~~l~~~~~~l~~~~~~~~~~~~-~g~~~~~I~~~a 247 (294)
T 3loq_A 182 WADRALEYAKFVVKKTGGELHIIHVSEDGD-------------KTADLRVMEEVIGAEGIEVHVHIE-SGTPHKAILAKR 247 (294)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEECSSSC-------------CHHHHHHHHHHHHHTTCCEEEEEE-CSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCEEEEEEEccCch-------------HHHHHHHHHHHHHHcCCcEEEEEe-cCCHHHHHHHHH
Confidence 344566655432 3 688888877542 1245777788888889874 333 478999999999
Q ss_pred HHcCCCEEEEecc-cChh-hHHHHHHHHHHHHhCCeEEEEec
Q 005723 91 KATGATQLFFNHL-YDPL-SLVRDHRAKEALTAQGIAVRSFN 130 (681)
Q Consensus 91 ~~~~~~~V~~n~~-y~p~-~~~rD~~v~~~l~~~gI~v~~~~ 130 (681)
++.+++-|+.-.. .... ....-...++++....|+|-.+.
T Consensus 248 ~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv~ 289 (294)
T 3loq_A 248 EEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVCK 289 (294)
T ss_dssp HHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEEC
T ss_pred HhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEEC
Confidence 9999999887632 2222 22223334556777788877664
No 24
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=44.45 E-value=35 Score=28.01 Aligned_cols=64 Identities=23% Similarity=0.328 Sum_probs=42.5
Q ss_pred HHhHHHHHHHHHhCCCceEEEeCCCh---HHHHHHHHHHcCCCEEEEecccChhhHHHHHHHHHHHHhCC
Q 005723 57 KHSLSHLDSSLRSLGTSLVTKRSTDS---VSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQG 123 (681)
Q Consensus 57 ~esL~dL~~~L~~~G~~L~v~~~g~~---~~~L~~L~~~~~~~~V~~n~~y~p~~~~rD~~v~~~l~~~g 123 (681)
-+-++++-++++..|-+|+++..|.. +..+..-+++.|+.-=+. ...+|.++. ++|+++++..|
T Consensus 37 sqdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvl-kstdpeelt--qrvreflktag 103 (112)
T 2lnd_A 37 SQDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVL-KSTDPEELT--QRVREFLKTAG 103 (112)
T ss_dssp HHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEE-ECCCHHHHH--HHHHHHHHHTT
T ss_pred hhhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhh-ccCCHHHHH--HHHHHHHHhcc
Confidence 36688888899999999988765544 444555566667653222 234677653 57888887666
No 25
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=43.89 E-value=1.7e+02 Score=28.69 Aligned_cols=115 Identities=17% Similarity=0.119 Sum_probs=74.4
Q ss_pred CCCCCeEEEEEcCCCCCCCCHHHHHHHHc-----CCeEEEEEEcCCCCCCCCCchhhHHHHHHhHHHHHHHHHhCCCceE
Q 005723 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRA-----GAVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLV 75 (681)
Q Consensus 1 m~~~~~~LvWFRrDLRl~DN~AL~aA~~~-----~~vlpVfI~dP~~~~~~~~~r~~r~FL~esL~dL~~~L~~~G~~L~ 75 (681)
|..-++.|+=. |.--....||..|+.. ..+..|+|.+|. ... +.|+++.+.++..|+++.
T Consensus 4 M~~~~~ILv~~--D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~--------~~~-----~~l~~~~~~~~~~~~~~~ 68 (290)
T 3mt0_A 4 MQAIRSILVVI--EPDQLEGLALKRAQLIAGVTQSHLHLLVCEKRR--------DHS-----AALNDLAQELREEGYSVS 68 (290)
T ss_dssp TTTCCEEEEEC--CSSCSCCHHHHHHHHHHHHHCCEEEEEEECSSS--------CCH-----HHHHHHHHHHHHTTCCEE
T ss_pred hhhhceEEEEe--CCCccchHHHHHHHHHHHhcCCeEEEEEeeCcH--------HHH-----HHHHHHHHHHhhCCCeEE
Confidence 44445555544 7777888899887643 367788887651 111 335666777778888864
Q ss_pred E--EeCCChHHHHHHHHHHcCCCEEEEeccc-Chhh-HHHHHHHHHHHHhCCeEEEEec
Q 005723 76 T--KRSTDSVSSLLEVVKATGATQLFFNHLY-DPLS-LVRDHRAKEALTAQGIAVRSFN 130 (681)
Q Consensus 76 v--~~~g~~~~~L~~L~~~~~~~~V~~n~~y-~p~~-~~rD~~v~~~l~~~gI~v~~~~ 130 (681)
. ...|++.+.|.+.+++.+++-|+.-... .... ...-....+++...+++|-.+.
T Consensus 69 ~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PVlvv~ 127 (290)
T 3mt0_A 69 TNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVLMTK 127 (290)
T ss_dssp EEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEEEEC
T ss_pred EEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCEEEec
Confidence 4 2247789999999999999999986432 1111 1112234456677889988876
No 26
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=41.40 E-value=1.3e+02 Score=25.63 Aligned_cols=115 Identities=13% Similarity=0.017 Sum_probs=62.8
Q ss_pred CCCCCCCHHHHHHHHc-----CCeEEEEEEcC-CCCCCCCCchhhHHH----HHHhHHHHHHHHHhCCCce---EEEeCC
Q 005723 14 DLRVEDNPALAAGVRA-----GAVIAVFIWAP-EEEGPYYPGRVSRWW----LKHSLSHLDSSLRSLGTSL---VTKRST 80 (681)
Q Consensus 14 DLRl~DN~AL~aA~~~-----~~vlpVfI~dP-~~~~~~~~~r~~r~F----L~esL~dL~~~L~~~G~~L---~v~~~g 80 (681)
|.--....||..|++. ..+..|+|+++ ..............+ ..++...|++-+++.|++. .+. .|
T Consensus 10 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~g 88 (141)
T 1jmv_A 10 DLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYPISEKLSG-SG 88 (141)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHSSSCCCCEEEE-EE
T ss_pred cCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEe-cC
Confidence 4444455677766532 36888888843 110010000000000 1122333444445567653 444 47
Q ss_pred ChHHHHHHHHHHcCCCEEEEecccChhhHHHHHHHHHHHHhCCeEEEEec
Q 005723 81 DSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFN 130 (681)
Q Consensus 81 ~~~~~L~~L~~~~~~~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~~~ 130 (681)
++.+.|.+.+++.+++-|+.-........ .-....+.+...+|+|..+.
T Consensus 89 ~~~~~I~~~a~~~~~dliV~G~~~~~~~~-lgs~~~~vl~~~~~pVlvv~ 137 (141)
T 1jmv_A 89 DLGQVLSDAIEQYDVDLLVTGHHQDFWSK-LMSSTRQVMNTIKIDMLVVP 137 (141)
T ss_dssp CHHHHHHHHHHHTTCCEEEEEECCCCHHH-HHHHHHHHHTTCCSEEEEEE
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCchhhh-hcchHHHHHhcCCCCEEEee
Confidence 89999999999999999988644222222 22334456677788887664
No 27
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=39.88 E-value=85 Score=29.35 Aligned_cols=66 Identities=11% Similarity=0.033 Sum_probs=44.8
Q ss_pred HHhHHHHHHHHHhCCCceEEEeCCChHHHHHHHHHHcCCCEEEEecc-------------cChhhHHHHHHHHHHHHhCC
Q 005723 57 KHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFNHL-------------YDPLSLVRDHRAKEALTAQG 123 (681)
Q Consensus 57 ~esL~dL~~~L~~~G~~L~v~~~g~~~~~L~~L~~~~~~~~V~~n~~-------------y~p~~~~rD~~v~~~l~~~g 123 (681)
...+.++-+.|++.|+++.|.. +.....+..+++..|+..++.+.. ........-..+++++++.|
T Consensus 94 ~~g~~~~l~~l~~~g~~~~ivS-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~K~~~~~~~~~~~~ 172 (232)
T 3fvv_A 94 TVQAVDVVRGHLAAGDLCALVT-ATNSFVTAPIARAFGVQHLIATDPEYRDGRYTGRIEGTPSFREGKVVRVNQWLAGMG 172 (232)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEE-SSCHHHHHHHHHHTTCCEEEECEEEEETTEEEEEEESSCSSTHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHCCCEEEEEe-CCCHHHHHHHHHHcCCCEEEEcceEEECCEEeeeecCCCCcchHHHHHHHHHHHHcC
Confidence 4566777788899999998875 556777888889999987765421 01122233345667777777
No 28
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=38.87 E-value=94 Score=29.59 Aligned_cols=73 Identities=11% Similarity=0.034 Sum_probs=50.0
Q ss_pred HhHHHHHHHHHhCCCceEE-EeCCChHHHHHHHHHHcC--CCEEEEecccChhhHHHHHHHHHHHHhCCeEEEEecCC
Q 005723 58 HSLSHLDSSLRSLGTSLVT-KRSTDSVSSLLEVVKATG--ATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNAD 132 (681)
Q Consensus 58 esL~dL~~~L~~~G~~L~v-~~~g~~~~~L~~L~~~~~--~~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~~~~~ 132 (681)
+++.-|+..+++.|-+++| +.+|..-.+|..++.+.+ +..|++++...+.+. .+.++++|++.||+++.+..+
T Consensus 31 ~~~~~l~~~~~~~~~~v~Va~SGGkDS~vLL~ll~~~~~~v~~v~vd~g~~~~e~--~~~v~~~~~~~gi~~~v~~~~ 106 (215)
T 1sur_A 31 DAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPET--YRFIDELTDKLKLNLKVYRAT 106 (215)
T ss_dssp CHHHHHHHHHHHCCSEEEEECCCCTTHHHHHHHHHHHSTTCEEEEEECSCBCHHH--HHHHHHHHHHTTCEEEEEECS
T ss_pred CHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCeEEEeeCCCCCHHH--HHHHHHHHHHhCCcEEEEeCC
Confidence 4566677778887767655 345666667888887754 667778876653222 346778889999999887543
No 29
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=37.33 E-value=1.1e+02 Score=28.19 Aligned_cols=77 Identities=14% Similarity=0.225 Sum_probs=46.2
Q ss_pred hHHHHHHHHH----hCCCceEEEeCCChHHHHHHHHHHc--CCCEEEEecc-cChhhHHHHHHHHHHHHhCCeEEEEecC
Q 005723 59 SLSHLDSSLR----SLGTSLVTKRSTDSVSSLLEVVKAT--GATQLFFNHL-YDPLSLVRDHRAKEALTAQGIAVRSFNA 131 (681)
Q Consensus 59 sL~dL~~~L~----~~G~~L~v~~~g~~~~~L~~L~~~~--~~~~V~~n~~-y~p~~~~rD~~v~~~l~~~gI~v~~~~~ 131 (681)
+|.++.+.|+ ++|+.+.++.. +.+..|.+.+++. +++.|+.|.. |+-.+.. +++++...++++..++-
T Consensus 33 Tl~di~~~l~~~a~~~g~~~~~~QS-N~EgeLId~Ih~a~~~~dgiiINpgA~THtSvA----lrDAl~~~~~P~VEVHi 107 (153)
T 3lwz_A 33 TLAEIVSQLEIQAQGMDVALSHLQS-NAEHALIDSIHQARGNTDFILINPAAFTHTSVA----LRDALLGVQIPFIEIHL 107 (153)
T ss_dssp CHHHHHHHHHHHHHHTTEEEEEEEC-SCHHHHHHHHHHHTTTCSEEEEECGGGGGTCHH----HHHHHHHHTCCEEEEES
T ss_pred CHHHHHHHHHHHHHHcCCEEEEEec-CCHHHHHHHHHHhhhcCceEEEccccceechHH----HHHHHHhcCCCEEEEEc
Confidence 3444444444 47889988864 4444444444432 4788999944 4444443 44455566899999887
Q ss_pred CeeeCCccc
Q 005723 132 DLLYEPWDV 140 (681)
Q Consensus 132 ~~L~~p~~i 140 (681)
..++..+.+
T Consensus 108 SNi~aRE~F 116 (153)
T 3lwz_A 108 SNVHAREPF 116 (153)
T ss_dssp SCGGGSCGG
T ss_pred CCccccchh
Confidence 666655443
No 30
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=37.08 E-value=1.7e+02 Score=27.39 Aligned_cols=68 Identities=12% Similarity=0.172 Sum_probs=42.8
Q ss_pred HhCCCceEEEeCCChHHHHHHHHHH---cCCCEEEEecc-cChhhHHHHHHHHHHHHhCCeEEEEecCCeeeCCccc
Q 005723 68 RSLGTSLVTKRSTDSVSSLLEVVKA---TGATQLFFNHL-YDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDV 140 (681)
Q Consensus 68 ~~~G~~L~v~~~g~~~~~L~~L~~~---~~~~~V~~n~~-y~p~~~~rD~~v~~~l~~~gI~v~~~~~~~L~~p~~i 140 (681)
.++|+.+.++.. +.+..|.+.+++ .+++.|+.|.. |+-.+. ++++++...++++..++-..++..+.+
T Consensus 55 ~~~g~~v~~~QS-N~EGeLId~Ih~A~~~~~dgIIINpgAyTHtSv----AlrDAL~~v~~P~VEVHiSNihaRE~F 126 (167)
T 3kip_A 55 KNNDSEVLVFQS-NTEGFIIDRIHEAKRQGVGFVVINAGAYTHTSV----GIRDALLGTAIPFIEVHITNVHQREPF 126 (167)
T ss_dssp TCSSCEEEEEEC-SCHHHHHHHHHHHHHTTCCEEEEECGGGGGTCH----HHHHHHHHTTCCEEEEESSCGGGSCGG
T ss_pred ccCCcEEEEEec-CCHHHHHHHHHHhhhcCccEEEEccccceeccH----HHHHHHHhcCCCEEEEEcCCccccccc
Confidence 346788888764 444444444433 25889999944 444444 345556677899999887766655443
No 31
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=36.88 E-value=1.8e+02 Score=28.16 Aligned_cols=73 Identities=12% Similarity=0.138 Sum_probs=46.1
Q ss_pred HHHHhHHHHHHHHHhCCCceEEEeCCC-h---HHHHHHHHHHcCCCEEEEecccChhhHHHHHHHHHHHHhCCeEEEEec
Q 005723 55 WLKHSLSHLDSSLRSLGTSLVTKRSTD-S---VSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFN 130 (681)
Q Consensus 55 FL~esL~dL~~~L~~~G~~L~v~~~g~-~---~~~L~~L~~~~~~~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~~~ 130 (681)
|..+-+..+.+.+++.|..+++..... . .+.+..+ ...+++.|++.-. .....+..+ +.+.+.||++..++
T Consensus 19 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiIi~~~---~~~~~~~~~-~~~~~~~iPvV~~~ 93 (291)
T 3l49_A 19 WDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTL-IAQKPDAIIEQLG---NLDVLNPWL-QKINDAGIPLFTVD 93 (291)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHH-HHHCCSEEEEESS---CHHHHHHHH-HHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHH-HHcCCCEEEEeCC---ChhhhHHHH-HHHHHCCCcEEEec
Confidence 556778888889999999998765332 2 2334443 3468999887621 111222233 45667899999886
Q ss_pred CC
Q 005723 131 AD 132 (681)
Q Consensus 131 ~~ 132 (681)
..
T Consensus 94 ~~ 95 (291)
T 3l49_A 94 TA 95 (291)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 32
>1ym0_B Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Probab=36.79 E-value=13 Score=23.24 Aligned_cols=14 Identities=50% Similarity=1.058 Sum_probs=10.7
Q ss_pred ccccCCC----CCCcccc
Q 005723 634 VPVWSPA----TSSYSEQ 647 (681)
Q Consensus 634 vp~ws~~----~s~~~~~ 647 (681)
-|||-|- .|+|||.
T Consensus 2 ppvwypggqcgvsqysda 19 (27)
T 1ym0_B 2 PPVWYPGGQCGVSQYSDA 19 (27)
T ss_dssp CCCSCTTSCCSCCSSTTT
T ss_pred CceeccCCcccceecccc
Confidence 3899886 7888873
No 33
>3i8o_A KH domain-containing protein MJ1533; APC89320.5, methanocaldococcus jannaschii DSM 2661, structural genomics, PSI-2; 2.64A {Methanocaldococcus jannaschii}
Probab=35.03 E-value=1.8e+02 Score=26.37 Aligned_cols=89 Identities=18% Similarity=0.081 Sum_probs=55.1
Q ss_pred CeEEEEEEcCCCCCCCCCchhhHHHHHHhHHHHHHHHHhCCCceEEEeC------------CChHHHHHHHHHHcCCCEE
Q 005723 31 AVIAVFIWAPEEEGPYYPGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRS------------TDSVSSLLEVVKATGATQL 98 (681)
Q Consensus 31 ~vlpVfI~dP~~~~~~~~~r~~r~FL~esL~dL~~~L~~~G~~L~v~~~------------g~~~~~L~~L~~~~~~~~V 98 (681)
-++|-||++.-+. ....++.+-+.=++=|+.|++.-.+.++++.+... ++.-..|.++|++.++. |
T Consensus 32 iiIP~~Vl~EL~~-~a~~~r~~GrrGLe~L~~L~~~~~~~~i~vei~~~r~~~~~i~~~~~~~vD~~l~~lA~~~~a~-l 109 (142)
T 3i8o_A 32 IIIPEAVVSELEY-QANMGREIGYKGIEELRKLIEKASEHNIKVEYYGERPTREEIFLAKSGEIDAMIRKVAKETNSI-L 109 (142)
T ss_dssp EEEEHHHHHHHHH-HHTTTCHHHHHHHHHHHHHHHHHHHTTCCEEEESCCCCHHHHHSCCSSSHHHHHHHHHHHTTCE-E
T ss_pred EEehHHHHHHHHH-HHHccchhhHHHHHHHHHHHHHhhccCceEEEecccCchhhhccccCCcHHHHHHHHHHHhCCE-E
Confidence 3677777753211 11123444334456666666655567888877531 34456688999998864 4
Q ss_pred EEecccChhhHHHHHHHHHHHHhCCeEEEEecC
Q 005723 99 FFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNA 131 (681)
Q Consensus 99 ~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~~~~ 131 (681)
+++ |..+++.|..+||+|.....
T Consensus 110 vTn----------D~~l~kvA~~~GI~V~~l~~ 132 (142)
T 3i8o_A 110 LTS----------DWIQYNLAKAQGIEAYFLEA 132 (142)
T ss_dssp EES----------CHHHHHHHHHTTCCEEECCC
T ss_pred EcC----------CHHHHHHHHHcCCEEEEecc
Confidence 455 23677788899999987643
No 34
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=34.50 E-value=2.7e+02 Score=25.56 Aligned_cols=74 Identities=18% Similarity=0.141 Sum_probs=47.3
Q ss_pred HHHHHHHhCCCceEEEeCCChHHHHHHHHHHc-C--CCEEEEecc-cChhhHHHHHHHHHHHHhCCeEEEEecCCeeeCC
Q 005723 62 HLDSSLRSLGTSLVTKRSTDSVSSLLEVVKAT-G--ATQLFFNHL-YDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEP 137 (681)
Q Consensus 62 dL~~~L~~~G~~L~v~~~g~~~~~L~~L~~~~-~--~~~V~~n~~-y~p~~~~rD~~v~~~l~~~gI~v~~~~~~~L~~p 137 (681)
.|++.-.++|+.|.++.. +.+..|.+.+++. + ++.|+.|.. |+-.+. ++++++...++++..++-+.++.+
T Consensus 32 ~l~~~a~~~g~~v~~~QS-N~EgeLId~Ih~a~~~~~dgiIINpgA~THtSv----AlrDAl~~v~~P~VEVHiSNi~aR 106 (149)
T 2uyg_A 32 LCEAWGAELGLGVVFRQT-NYEGQLIEWVQQAHQEGFLAIVLNPGALTHYSY----ALLDAIRAQPLPVVEVHLTNLHAR 106 (149)
T ss_dssp HHHHHHHHTTCCEEEEEC-SCHHHHHHHHHHTTTTTCSEEEEECGGGGGTCH----HHHHHHHTSCSCEEEEESSCGGGS
T ss_pred HHHHHHHHcCCEEEEEee-CCHHHHHHHHHHhccCCeeEEEEccchhccccH----HHHHHHHhCCCCEEEEEecCcccc
Confidence 334444566999988874 4454555444443 2 678999944 444454 456677788999999987766655
Q ss_pred ccc
Q 005723 138 WDV 140 (681)
Q Consensus 138 ~~i 140 (681)
+++
T Consensus 107 E~F 109 (149)
T 2uyg_A 107 EEF 109 (149)
T ss_dssp CGG
T ss_pred ccc
Confidence 443
No 35
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=33.73 E-value=1e+02 Score=28.91 Aligned_cols=77 Identities=17% Similarity=0.202 Sum_probs=46.8
Q ss_pred hHHHHHHHHH----hCCCceEEEeCCChHHHHHHHHHHc--CCCEEEEecc-cChhhHHHHHHHHHHHHhCCeEEEEecC
Q 005723 59 SLSHLDSSLR----SLGTSLVTKRSTDSVSSLLEVVKAT--GATQLFFNHL-YDPLSLVRDHRAKEALTAQGIAVRSFNA 131 (681)
Q Consensus 59 sL~dL~~~L~----~~G~~L~v~~~g~~~~~L~~L~~~~--~~~~V~~n~~-y~p~~~~rD~~v~~~l~~~gI~v~~~~~ 131 (681)
+|.++.+.|+ ++|+.+.++.. +.+..|.+.+++. +++.|+.|.. |+-.+. ++++++...++++..++-
T Consensus 54 TL~dI~~~l~~~a~~~G~~l~~~QS-N~EGeLId~Ih~A~~~~dgIIINPgAyTHtSv----AlrDAL~~v~~P~VEVHi 128 (172)
T 3n8k_A 54 THDELVALIEREAAELGLKAVVRQS-DSEAQLLDWIHQAADAAEPVILNAGGLTHTSV----ALRDACAELSAPLIEVHI 128 (172)
T ss_dssp CHHHHHHHHHHHHHHTTCEEEEEEC-SCHHHHHHHHHHHHHHTCCEEEECGGGGGTCH----HHHHHHTTCCSCEEEEES
T ss_pred CHHHHHHHHHHHHHHcCCEEEEEec-CCHHHHHHHHHHhhhcCcEEEECcchhhhhhH----HHHHHHHhCCCCEEEEEc
Confidence 3444444443 47999988864 3444444433332 4678999843 443444 455667778999999887
Q ss_pred CeeeCCccc
Q 005723 132 DLLYEPWDV 140 (681)
Q Consensus 132 ~~L~~p~~i 140 (681)
..++..+.+
T Consensus 129 SNihaRE~F 137 (172)
T 3n8k_A 129 SNVHAREEF 137 (172)
T ss_dssp SCTTSSCGG
T ss_pred CCchhcccc
Confidence 666655443
No 36
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=33.48 E-value=1.9e+02 Score=24.52 Aligned_cols=59 Identities=12% Similarity=0.131 Sum_probs=35.9
Q ss_pred CCC-c--eEEEeCCChHHHHHHHHHHcCCCEEEEeccc-Chhh-HHHHHHHHHHHHhCCeEEEEe
Q 005723 70 LGT-S--LVTKRSTDSVSSLLEVVKATGATQLFFNHLY-DPLS-LVRDHRAKEALTAQGIAVRSF 129 (681)
Q Consensus 70 ~G~-~--L~v~~~g~~~~~L~~L~~~~~~~~V~~n~~y-~p~~-~~rD~~v~~~l~~~gI~v~~~ 129 (681)
.|+ + ..+.. |++.+.|.+++++.+++-|+.-... .... ...-....+.+...+|+|..+
T Consensus 73 ~g~~~~~~~~~~-g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 73 TGVPKEDALLLE-GVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp HCCCGGGEEEEE-SSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCSSCEEEE
T ss_pred cCCCccEEEEEe-cCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcCCCCEEEe
Confidence 566 4 45554 7899999999999999999986432 2111 111122334455566766543
No 37
>2gvs_A Chemosensory protein CSP-SG4; alpha-coil, lipid binding protein; NMR {Schistocerca gregaria}
Probab=32.45 E-value=11 Score=33.04 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=18.2
Q ss_pred ccccCCchhhHHhhchhccCCC
Q 005723 416 GYKFDPNGEYVRRWLPELARLP 437 (681)
Q Consensus 416 ~~k~Dp~G~yIr~wvPeL~~~p 437 (681)
..||||+|.|.+++--+++.++
T Consensus 87 ~~KyDP~g~y~~ky~~~~~~~~ 108 (109)
T 2gvs_A 87 KAKYDPDGTYSKKYEDREKELH 108 (109)
T ss_dssp HHHHCTTCTTTHHHHTTTCCSC
T ss_pred HHHHCCCchHHHHHHHHHHHcc
Confidence 3589999999999988887654
No 38
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=32.42 E-value=2.1e+02 Score=27.99 Aligned_cols=110 Identities=10% Similarity=-0.005 Sum_probs=59.0
Q ss_pred CHHHHHHHHc-----CCeEEEEEEcCCCCCCCCCc-hhhHHHHHHhHHHHHHHHHhCCCc---eEEEeCCChHHHHHHHH
Q 005723 20 NPALAAGVRA-----GAVIAVFIWAPEEEGPYYPG-RVSRWWLKHSLSHLDSSLRSLGTS---LVTKRSTDSVSSLLEVV 90 (681)
Q Consensus 20 N~AL~aA~~~-----~~vlpVfI~dP~~~~~~~~~-r~~r~FL~esL~dL~~~L~~~G~~---L~v~~~g~~~~~L~~L~ 90 (681)
..||..|+.. ..+..|+|+++.......+. ........+....|++-+++.|++ ..+.. |++.+.|.+++
T Consensus 155 ~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~v~~-g~~~~~I~~~a 233 (290)
T 3mt0_A 155 AGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQAEYGFSDEQLHIEE-GPADVLIPRTA 233 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHHHHHHHTCCTTTEEEEE-SCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHHHHHHcCCCcceEEEec-cCHHHHHHHHH
Confidence 4566666432 36888999886432111111 111112223344444445555763 45554 78999999999
Q ss_pred HHcCCCEEEEecc-cChhh-HHHHHHHHHHHHhCCeEEEEec
Q 005723 91 KATGATQLFFNHL-YDPLS-LVRDHRAKEALTAQGIAVRSFN 130 (681)
Q Consensus 91 ~~~~~~~V~~n~~-y~p~~-~~rD~~v~~~l~~~gI~v~~~~ 130 (681)
++.+++-|+.-.. ..... ...-....+.+....|+|-.+.
T Consensus 234 ~~~~~dLiVmG~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~ 275 (290)
T 3mt0_A 234 QKLDAVVTVIGTVARTGLSGALIGNTAEVVLDTLESDVLVLK 275 (290)
T ss_dssp HHHTCSEEEEECCSSCCGGGCCSCHHHHHHHTTCSSEEEEEC
T ss_pred HhcCCCEEEECCCCCcCCcceecchHHHHHHhcCCCCEEEEC
Confidence 9999999988532 22221 1112233456677778877664
No 39
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=31.33 E-value=1.5e+02 Score=26.56 Aligned_cols=73 Identities=12% Similarity=0.110 Sum_probs=46.6
Q ss_pred HHhHHHHHHHHHhCCCce--EEEeCCChHHHHHHHHHHcCCCEEEEecc-cChhh-HHHHHHHHHHHHhCCeEEEEec
Q 005723 57 KHSLSHLDSSLRSLGTSL--VTKRSTDSVSSLLEVVKATGATQLFFNHL-YDPLS-LVRDHRAKEALTAQGIAVRSFN 130 (681)
Q Consensus 57 ~esL~dL~~~L~~~G~~L--~v~~~g~~~~~L~~L~~~~~~~~V~~n~~-y~p~~-~~rD~~v~~~l~~~gI~v~~~~ 130 (681)
.+.|..+.+.+.+.|++. ++. .|++.+.|.+++++.+++-|+.-.. ..... ...-....+.+...+|+|..+.
T Consensus 86 ~~~l~~~~~~~~~~g~~~~~~v~-~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~~pVlvv~ 162 (175)
T 2gm3_A 86 LHLLEFFVNKCHEIGVGCEAWIK-TGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIK 162 (175)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEE-ESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHHCCCceEEEEe-cCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCCCCEEEEc
Confidence 345666666777778775 344 3789999999999999999988643 22221 1112223455667788887764
No 40
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=30.97 E-value=61 Score=31.23 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=51.1
Q ss_pred CchhhHHHHHHhHHHHHHHHHhCCCceEEEeC--CChHHHHHHHHHHcCCCEEEEeccc---ChhhHHHHHHHHHHHHhC
Q 005723 48 PGRVSRWWLKHSLSHLDSSLRSLGTSLVTKRS--TDSVSSLLEVVKATGATQLFFNHLY---DPLSLVRDHRAKEALTAQ 122 (681)
Q Consensus 48 ~~r~~r~FL~esL~dL~~~L~~~G~~L~v~~~--g~~~~~L~~L~~~~~~~~V~~n~~y---~p~~~~rD~~v~~~l~~~ 122 (681)
+|+.+- -++|+-..+..+++|++-+|... |.+...+.+.+ .++.-|++.+.+ +|.....+..+++.|++.
T Consensus 23 ~G~eNT---~~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~ 97 (201)
T 1vp8_A 23 PGRENT---EETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKR 97 (201)
T ss_dssp CSGGGH---HHHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHT
T ss_pred CCcccH---HHHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhC
Confidence 455542 46677777888888999666543 44544444444 356666666554 466666777888899999
Q ss_pred CeEEEE
Q 005723 123 GIAVRS 128 (681)
Q Consensus 123 gI~v~~ 128 (681)
|+++.+
T Consensus 98 G~~V~t 103 (201)
T 1vp8_A 98 GAKIVR 103 (201)
T ss_dssp TCEEEE
T ss_pred CCEEEE
Confidence 998876
No 41
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=30.03 E-value=2.2e+02 Score=27.35 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=46.9
Q ss_pred HHHHhHHHHHHHHHhCCCceEEEeCCChHH---HHHHHHHHcCCCEEEEecccChhhHHHHHHHHHHHHhCCeEEEEecC
Q 005723 55 WLKHSLSHLDSSLRSLGTSLVTKRSTDSVS---SLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNA 131 (681)
Q Consensus 55 FL~esL~dL~~~L~~~G~~L~v~~~g~~~~---~L~~L~~~~~~~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~~~~ 131 (681)
|..+-+..+.+.++++|..+.+.......+ .+.+.+.+.+++.|++.-... +..+ +.+.+.||++..++.
T Consensus 21 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~------~~~~-~~l~~~~iPvV~i~~ 93 (276)
T 3jy6_A 21 FSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN------PQTV-QEILHQQMPVVSVDR 93 (276)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC------HHHH-HHHHTTSSCEEEESC
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc------HHHH-HHHHHCCCCEEEEec
Confidence 566777888899999999998765432222 233444566899988863221 2333 456778999998865
Q ss_pred C
Q 005723 132 D 132 (681)
Q Consensus 132 ~ 132 (681)
.
T Consensus 94 ~ 94 (276)
T 3jy6_A 94 E 94 (276)
T ss_dssp C
T ss_pred c
Confidence 3
No 42
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=29.82 E-value=2.8e+02 Score=27.16 Aligned_cols=117 Identities=10% Similarity=0.045 Sum_probs=67.8
Q ss_pred CCCCCCCHHHHHHHHc-----CCeEEEEEEcCCCCCCCC----Cchh---hHHHHHHhHHHHHHHHHhCCCceEE--Ee-
Q 005723 14 DLRVEDNPALAAGVRA-----GAVIAVFIWAPEEEGPYY----PGRV---SRWWLKHSLSHLDSSLRSLGTSLVT--KR- 78 (681)
Q Consensus 14 DLRl~DN~AL~aA~~~-----~~vlpVfI~dP~~~~~~~----~~r~---~r~FL~esL~dL~~~L~~~G~~L~v--~~- 78 (681)
|.--....||..|+.. ..+..|+|+++....... .... ...-..+.|.++.+.+++.|++... ..
T Consensus 30 D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~v~~ 109 (294)
T 3loq_A 30 DLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEVAQKIEAAGIKAEVIKPFP 109 (294)
T ss_dssp CSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECSSCC
T ss_pred CCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceeEeec
Confidence 4444445556555432 378888888765321110 1111 1113456677888888888988765 22
Q ss_pred CCChHHHHHHHHHHcCCCEEEEeccc-ChhhH-HHHHHHHHHHHhCCeEEEEecCC
Q 005723 79 STDSVSSLLEVVKATGATQLFFNHLY-DPLSL-VRDHRAKEALTAQGIAVRSFNAD 132 (681)
Q Consensus 79 ~g~~~~~L~~L~~~~~~~~V~~n~~y-~p~~~-~rD~~v~~~l~~~gI~v~~~~~~ 132 (681)
.|++.+.| ++++.+++-|+.-... ..... ..-....+.+...+|+|..+...
T Consensus 110 ~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~ 163 (294)
T 3loq_A 110 AGDPVVEI--IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVYIFKHD 163 (294)
T ss_dssp EECHHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEEEECCC
T ss_pred cCChhHhe--eeccCCCCEEEEcCCCCccccceeeccHHHHHHhcCCCCEEEecCc
Confidence 47788888 8899999999987432 22111 11122345667778888776543
No 43
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=29.75 E-value=84 Score=27.82 Aligned_cols=116 Identities=9% Similarity=0.091 Sum_probs=66.7
Q ss_pred CCCCCCCHHHHHHHHc-----CCeEEEEEEcCC-----CCCCC------C-Cch------hh---HHHHHHhHHHHHHHH
Q 005723 14 DLRVEDNPALAAGVRA-----GAVIAVFIWAPE-----EEGPY------Y-PGR------VS---RWWLKHSLSHLDSSL 67 (681)
Q Consensus 14 DLRl~DN~AL~aA~~~-----~~vlpVfI~dP~-----~~~~~------~-~~r------~~---r~FL~esL~dL~~~L 67 (681)
|.--....||..|++. ..+..|+|+++. ....+ . +.. .. +.-..+.|.++.+.+
T Consensus 13 D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (162)
T 1mjh_A 13 DFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNKMENIKKEL 92 (162)
T ss_dssp CSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455678777754 268889998764 11011 0 110 00 012345567777778
Q ss_pred HhCCCce--EEEeCCChHHHHHHHHHHcCCCEEEEecc-cChhhH-HHHHHHHHHHHhCCeEEEEec
Q 005723 68 RSLGTSL--VTKRSTDSVSSLLEVVKATGATQLFFNHL-YDPLSL-VRDHRAKEALTAQGIAVRSFN 130 (681)
Q Consensus 68 ~~~G~~L--~v~~~g~~~~~L~~L~~~~~~~~V~~n~~-y~p~~~-~rD~~v~~~l~~~gI~v~~~~ 130 (681)
+..|++. .+. .|++.+.|.+++++.+++-|+.-.. ...... ..-....+.+....|+|..+.
T Consensus 93 ~~~g~~~~~~v~-~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~~pVlvv~ 158 (162)
T 1mjh_A 93 EDVGFKVKDIIV-VGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVK 158 (162)
T ss_dssp HHTTCEEEEEEE-EECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEEC
T ss_pred HHcCCceEEEEc-CCCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCCCCEEEEe
Confidence 8888875 344 3789999999999999999988633 222111 111123344556678777664
No 44
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=29.31 E-value=1.1e+02 Score=27.56 Aligned_cols=72 Identities=10% Similarity=0.111 Sum_probs=47.8
Q ss_pred HhHHHHHHHHHhCCCc-e--EEEeCCChHHHHHHHHHHcCCCEEEEecc-cChhhH-HHHHHHHHHHHhCCeEEEEec
Q 005723 58 HSLSHLDSSLRSLGTS-L--VTKRSTDSVSSLLEVVKATGATQLFFNHL-YDPLSL-VRDHRAKEALTAQGIAVRSFN 130 (681)
Q Consensus 58 esL~dL~~~L~~~G~~-L--~v~~~g~~~~~L~~L~~~~~~~~V~~n~~-y~p~~~-~rD~~v~~~l~~~gI~v~~~~ 130 (681)
+-|.++.+.+++.|++ + .+. .|++.+.|.+++++.+++-|+.-.. ...... ..-....+.+....|+|..+.
T Consensus 81 ~~l~~~~~~~~~~gv~~v~~~v~-~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlvV~ 157 (163)
T 1tq8_A 81 EILHDAKERAHNAGAKNVEERPI-VGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVH 157 (163)
T ss_dssp HHHHHHHHHHHTTTCCEEEEEEE-CSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHcCCCeEEEEEe-cCCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEEEe
Confidence 5567777788888887 4 444 4789999999999999999998643 222211 111122445566778887764
No 45
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=28.26 E-value=1.6e+02 Score=29.72 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=47.6
Q ss_pred HHHHhHHHHHHHHHhCCCceEEEeCC-Ch---HHHHHHHHHH-cCCCEEEEecccChhhHHHHHHHHHHHHhCCeEEEEe
Q 005723 55 WLKHSLSHLDSSLRSLGTSLVTKRST-DS---VSSLLEVVKA-TGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSF 129 (681)
Q Consensus 55 FL~esL~dL~~~L~~~G~~L~v~~~g-~~---~~~L~~L~~~-~~~~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~~ 129 (681)
|..+-+..+++.++++|..+.+.... +. .+.+..+++. .+++.|++.-... . ...+.+.+.+.||+|..+
T Consensus 18 f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~----~-~~~~~~~~~~~giPvV~~ 92 (350)
T 3h75_A 18 FWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQY----V-APQILRLSQGSGIKLFIV 92 (350)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSS----H-HHHHHHHHTTSCCEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchh----h-HHHHHHHHHhCCCcEEEE
Confidence 55566777788888889999776543 22 2346666665 6899988863111 1 123334567889999998
Q ss_pred cCC
Q 005723 130 NAD 132 (681)
Q Consensus 130 ~~~ 132 (681)
+..
T Consensus 93 ~~~ 95 (350)
T 3h75_A 93 NSP 95 (350)
T ss_dssp ESC
T ss_pred cCC
Confidence 754
No 46
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=28.24 E-value=4.3e+02 Score=25.87 Aligned_cols=130 Identities=15% Similarity=0.039 Sum_probs=75.3
Q ss_pred CCCCCeEEEEEcCCCCCCCCHHHHHHHHc-----CCeEEEEEEcCCCCC--CCCCchhhHH-------HHHHhHHHHHHH
Q 005723 1 MSGRGCSIVWFRRDLRVEDNPALAAGVRA-----GAVIAVFIWAPEEEG--PYYPGRVSRW-------WLKHSLSHLDSS 66 (681)
Q Consensus 1 m~~~~~~LvWFRrDLRl~DN~AL~aA~~~-----~~vlpVfI~dP~~~~--~~~~~r~~r~-------FL~esL~dL~~~ 66 (681)
|..-++.|+=. |.--....||..|+.. ..|..|+|+++.... .......... -..+.|+++.+.
T Consensus 4 M~~~k~ILv~~--D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (319)
T 3olq_A 4 MEKYQNLLVVI--DPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARY 81 (319)
T ss_dssp -CCSCEEEEEC--CTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEE--CCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555544 7777778888877643 368888887542111 1110111100 123456666677
Q ss_pred HHhCCCceE--EEeCCChHHHHHHHHHHcCCCEEEEeccc-Chhh-HHHHHHHHHHHHhCCeEEEEecCC
Q 005723 67 LRSLGTSLV--TKRSTDSVSSLLEVVKATGATQLFFNHLY-DPLS-LVRDHRAKEALTAQGIAVRSFNAD 132 (681)
Q Consensus 67 L~~~G~~L~--v~~~g~~~~~L~~L~~~~~~~~V~~n~~y-~p~~-~~rD~~v~~~l~~~gI~v~~~~~~ 132 (681)
++..|++.. +...|++.+.|.+.+++.+++-|+.-... .... ...-....+++...+++|..+...
T Consensus 82 ~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~ 151 (319)
T 3olq_A 82 YLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMVKDK 151 (319)
T ss_dssp HHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEEESS
T ss_pred HhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEecCc
Confidence 777788763 33258899999999999999999886432 1111 001122345667778998887654
No 47
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=28.21 E-value=1.4e+02 Score=30.25 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=24.2
Q ss_pred HHHHHHHHHhCCCceEEEeCCChHHHHHHHHHHcCCCEEEEe
Q 005723 60 LSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKATGATQLFFN 101 (681)
Q Consensus 60 L~dL~~~L~~~G~~L~v~~~g~~~~~L~~L~~~~~~~~V~~n 101 (681)
|..|.+.+++.|++.++............|+++.|+..++.+
T Consensus 226 l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~v~~ld 267 (291)
T 1pq4_A 226 LKQLIDTAKENNLTMVFGETQFSTKSSEAIAAEIGAGVELLD 267 (291)
T ss_dssp HHHHHHHHHTTTCCEEEEETTSCCHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEEEEc
Confidence 556666666666666655433334455555666666655554
No 48
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=27.12 E-value=3.6e+02 Score=24.53 Aligned_cols=71 Identities=15% Similarity=0.198 Sum_probs=45.0
Q ss_pred HHHHhCCCceEEEeCCChHHHHHHHHH-Hc-CCCEEEEecc-cChhhHHHHHHHHHHHHhCCeEEEEecCCeeeCCccc
Q 005723 65 SSLRSLGTSLVTKRSTDSVSSLLEVVK-AT-GATQLFFNHL-YDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDV 140 (681)
Q Consensus 65 ~~L~~~G~~L~v~~~g~~~~~L~~L~~-~~-~~~~V~~n~~-y~p~~~~rD~~v~~~l~~~gI~v~~~~~~~L~~p~~i 140 (681)
+.-.++|..+.++.. +.+..|.+.++ .. +.+.|+.|.. |+-.+. ++++++...++++..++-..++.++++
T Consensus 36 ~~a~~~g~~~~~~QS-N~EgeLid~Ih~a~~~~dgiiiNpgA~THtSv----AlrDAl~~v~~P~VEVHiSNi~aRE~F 109 (143)
T 1gqo_A 36 QFAEALHIQLTFFQS-NHEGDLIDAIHEAEEQYSGIVLNPGALSHYSY----AIRDAVSSISLPVVEVHLSNLYAREEF 109 (143)
T ss_dssp HHHHHHTCEEEEEEC-SCHHHHHHHHHHHTTTCSEEEEECGGGGGTCH----HHHHHHHTSCSCEEEEESSCGGGSCGG
T ss_pred HHHHHcCCEEEEEee-CCHHHHHHHHHHhhhcCcEEEEccchhccccH----HHHHHHHhCCCCEEEEEecCccccccc
Confidence 333456899988865 44444444443 33 4778999944 444444 455667778999999987766655444
No 49
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=26.45 E-value=3.5e+02 Score=25.41 Aligned_cols=68 Identities=12% Similarity=0.103 Sum_probs=43.3
Q ss_pred hCCCceEEEeCCChHHHHHHHHHHcC--CCEEEEecc-cChhhHHHHHHHHHHHHhCCeEEEEecCCeeeCCccc
Q 005723 69 SLGTSLVTKRSTDSVSSLLEVVKATG--ATQLFFNHL-YDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWDV 140 (681)
Q Consensus 69 ~~G~~L~v~~~g~~~~~L~~L~~~~~--~~~V~~n~~-y~p~~~~rD~~v~~~l~~~gI~v~~~~~~~L~~p~~i 140 (681)
++|+.|.++.....-+.+..+.+..+ ++.|+.|.. |+-.+. .+++++...++++..++-..++..+++
T Consensus 51 ~~g~~l~~~QSN~EGeLId~Ih~a~~~~~dgIIINpgAyTHtSv----AlrDAl~~v~~P~VEVHiSNi~aRE~F 121 (176)
T 2c4w_A 51 NLDVELEFFQTNFEGEIIDKIQESVGSEYEGIIINPGAFSHTSI----AIADAIMLAGKPVIEVHLTNIQAREEF 121 (176)
T ss_dssp TCCEEEEEEECSCHHHHHHHHHHHHSSSCCEEEEECGGGGGTCH----HHHHHHHTSSSCEEEEESSCGGGSCGG
T ss_pred cCCCEEEEEeeCcHHHHHHHHHHhccCCeeEEEECcchhccchH----HHHHHHHhCCCCEEEEEecCccccccc
Confidence 56778888764333333444443332 778999944 444444 456677788999999987777665544
No 50
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=26.40 E-value=2e+02 Score=29.60 Aligned_cols=75 Identities=4% Similarity=0.043 Sum_probs=51.9
Q ss_pred HHHHhHHHHHHHHHhCCCceEEEeCCChHHHHHHHHHHc------CCCEEEEecccChhhHHHHHHHHHHHHhCCeEEEE
Q 005723 55 WLKHSLSHLDSSLRSLGTSLVTKRSTDSVSSLLEVVKAT------GATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRS 128 (681)
Q Consensus 55 FL~esL~dL~~~L~~~G~~L~v~~~g~~~~~L~~L~~~~------~~~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~ 128 (681)
+..+++.-|++.+++.+-.++.+.+|..-.+|+.|+.+. .+..|+++..+.+.+ -..-+.++|++.||++..
T Consensus 31 le~~a~~ilr~~~~~~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~~e--t~~~v~~~~~~~gi~l~v 108 (325)
T 1zun_A 31 LEAESIHIIREVAAEFDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQE--MYRFRDQMVEEMGLDLIT 108 (325)
T ss_dssp HHHHHHHHHHHHHHHCSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCCHH--HHHHHHHHHHTTTCCEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCCHH--HHHHHHHHHHHcCCCEEE
Confidence 556788888888888764344444566666777787775 577888887665322 234566788899999988
Q ss_pred ecC
Q 005723 129 FNA 131 (681)
Q Consensus 129 ~~~ 131 (681)
+..
T Consensus 109 ~~~ 111 (325)
T 1zun_A 109 HIN 111 (325)
T ss_dssp ECC
T ss_pred EeC
Confidence 764
No 51
>3lgb_A DNA primase large subunit; Fe-S cluster, DNA-binding, DNA-directed RNA POL iron, iron-sulfur, metal-binding, nucleotidyltransferase; HET: DNA MSE EPE; 1.54A {Saccharomyces cerevisiae}
Probab=25.95 E-value=89 Score=30.04 Aligned_cols=64 Identities=16% Similarity=0.112 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHhhccCCCchHHHHHHHHhcc--cccC--CCCccchhhhhcC
Q 005723 335 PLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLL--DADL--ESDALGWQYISGT 399 (681)
Q Consensus 335 P~VDAaMRqL~~TGwmHnr~Rm~vAsfl~k~L~idWr~G~~~F~~~Ll--D~D~--a~n~g~Wqw~aG~ 399 (681)
||+-+.+..|++..-+-|-.|+.++.|| |.++++=.+...+|...+. +.|. -.-.-+.+...|.
T Consensus 20 pCM~~l~~~Lr~~~hL~h~gR~ql~lFL-kgiGls~ee~l~f~r~~F~k~~~d~F~K~y~Y~IrH~yG~ 87 (194)
T 3lgb_A 20 LCIKNLMEGLKKNHHLRYYGRQQLSLFL-KGIGLSADEALKFWSEAFTNMTMEKFNKEYRYSFRHNYGL 87 (194)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHH-HHTTCCHHHHHHHHHHHSTTSCHHHHHHHTHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCCCchhHHHHHHHH-HhCCCCHHHHHHHHHHHcccCChhhhccceeeeeeeecCC
Confidence 6888888999999999999999999999 6678888888888877653 3321 1223456667764
No 52
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=24.92 E-value=3.3e+02 Score=24.89 Aligned_cols=73 Identities=18% Similarity=0.225 Sum_probs=45.3
Q ss_pred HHHHHHhCCCceEEEeCCChHHHHHHHHH-Hc-CCCEEEEecc-cChhhHHHHHHHHHHHHhCCeEEEEecCCeeeCCcc
Q 005723 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVK-AT-GATQLFFNHL-YDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWD 139 (681)
Q Consensus 63 L~~~L~~~G~~L~v~~~g~~~~~L~~L~~-~~-~~~~V~~n~~-y~p~~~~rD~~v~~~l~~~gI~v~~~~~~~L~~p~~ 139 (681)
+++.-+++|+.+.++.. +.+..|.+.++ .. .++.|+.|.. |+-.+. ++++++...++++..++-..++.+++
T Consensus 36 l~~~a~~~g~~~~~~QS-N~EgeLId~Ih~a~~~~dgiiINpgA~THtSv----AlrDAl~~v~~P~VEVHiSNi~aRE~ 110 (146)
T 1h05_A 36 IEREAAELGLKAVVRQS-DSEAQLLDWIHQAADAAEPVILNAGGLTHTSV----ALRDACAELSAPLIEVHISNVHAREE 110 (146)
T ss_dssp HHHHHHHTTCEEEEEEC-SCHHHHHHHHHHHHHHTCCEEEECGGGGGTCH----HHHHHHHTCCSCEEEEESSCGGGSCG
T ss_pred HHHHHHHcCCEEEEEee-CCHHHHHHHHHHhhhcCcEEEECchhhccccH----HHHHHHHhCCCCEEEEEecCcccccc
Confidence 33344556899988864 33444443333 32 3678899843 444444 45667778899999998776665544
Q ss_pred c
Q 005723 140 V 140 (681)
Q Consensus 140 i 140 (681)
+
T Consensus 111 F 111 (146)
T 1h05_A 111 F 111 (146)
T ss_dssp G
T ss_pred c
Confidence 4
No 53
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=24.89 E-value=2.5e+02 Score=27.32 Aligned_cols=72 Identities=17% Similarity=0.214 Sum_probs=48.8
Q ss_pred HHHHhHHHHHHHHHhCCCceEEEeCC--ChHHHHHHHHHHcCCCEEEEecccChhhHHHHHHHHHHHHhCCeEEEEecCC
Q 005723 55 WLKHSLSHLDSSLRSLGTSLVTKRST--DSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNAD 132 (681)
Q Consensus 55 FL~esL~dL~~~L~~~G~~L~v~~~g--~~~~~L~~L~~~~~~~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~~~~~ 132 (681)
|..+-+..+.+.++++|..+++.... +....+.+++.+.+++.|++.-.... . ..+ +.+.+.||++..++..
T Consensus 24 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~-~----~~~-~~l~~~~iPvV~~~~~ 97 (294)
T 3qk7_A 24 TFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPE-D----FRL-QYLQKQNFPFLALGRS 97 (294)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSS-C----HHH-HHHHHTTCCEEEESCC
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCC-h----HHH-HHHHhCCCCEEEECCC
Confidence 66677888889999999998776432 23345666777789999988632211 1 123 3466789999888643
No 54
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=24.85 E-value=2e+02 Score=27.77 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=45.4
Q ss_pred HHHHhHHHHHHHHHhCCCceEEEeCCChH----HHHHHHHHHcCCCEEEEecccChhhHHHHHHHHHHHHhCCeEEEEec
Q 005723 55 WLKHSLSHLDSSLRSLGTSLVTKRSTDSV----SSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFN 130 (681)
Q Consensus 55 FL~esL~dL~~~L~~~G~~L~v~~~g~~~----~~L~~L~~~~~~~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~~~ 130 (681)
|..+-+..+.+.+++.|..+++....... +.+..+ .+.+++.|++.-. .+... ...+ +.+.+.||++..++
T Consensus 22 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l-~~~~vdgiI~~~~-~~~~~--~~~~-~~~~~~~iPvV~~~ 96 (293)
T 3l6u_A 22 FAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEF-VHLKVDAIFITTL-DDVYI--GSAI-EEAKKAGIPVFAID 96 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHH-HHTTCSEEEEECS-CTTTT--HHHH-HHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHH-HHcCCCEEEEecC-ChHHH--HHHH-HHHHHcCCCEEEec
Confidence 55677788888899999999876543222 233333 3468998888632 11111 1123 34567799999886
Q ss_pred CC
Q 005723 131 AD 132 (681)
Q Consensus 131 ~~ 132 (681)
..
T Consensus 97 ~~ 98 (293)
T 3l6u_A 97 RM 98 (293)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 55
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=24.84 E-value=2.1e+02 Score=26.38 Aligned_cols=78 Identities=12% Similarity=0.176 Sum_probs=43.8
Q ss_pred HhHHHHHHHHH----hCCCceEEEeCCChHHHHHHHHHHc--CCCEEEEecc-cChhhHHHHHHHHHHHHhCCeEEEEec
Q 005723 58 HSLSHLDSSLR----SLGTSLVTKRSTDSVSSLLEVVKAT--GATQLFFNHL-YDPLSLVRDHRAKEALTAQGIAVRSFN 130 (681)
Q Consensus 58 esL~dL~~~L~----~~G~~L~v~~~g~~~~~L~~L~~~~--~~~~V~~n~~-y~p~~~~rD~~v~~~l~~~gI~v~~~~ 130 (681)
.+|.++.+.|+ ++|..+.++.. +.+..|.+.+++. +++.|+.|.. |+-.+......++. +...++++..++
T Consensus 29 ~Tl~di~~~l~~~a~~~g~~v~~~QS-N~EgeLId~Ih~a~~~~dgiiINpgA~THtSvAlrDAl~~-l~~~~~P~VEVH 106 (151)
T 3u80_A 29 QDLDTLRKLCAEWGKDLGLEVEVRQT-DDEAEMVRWMHQAADEKTPVVMNPAAFTHYSYALADAAHM-VIDENLPLMEVH 106 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEEEEC-SCHHHHHHHHHHHHHHTCCEEEECTTCCSCCHHHHHHHHH-HHHTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEEec-CCHHHHHHHHHHhhhcCcEEEECcchhhhhhHHHHHHHHH-HhhcCCCEEEEE
Confidence 34555554444 46888988764 3344444433332 3678899844 45455542223321 455689999988
Q ss_pred CCeeeCC
Q 005723 131 ADLLYEP 137 (681)
Q Consensus 131 ~~~L~~p 137 (681)
-..++.+
T Consensus 107 iSNi~aR 113 (151)
T 3u80_A 107 ISNPSAR 113 (151)
T ss_dssp SSCCC--
T ss_pred cCCcccc
Confidence 6665544
No 56
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=24.35 E-value=2.4e+02 Score=25.54 Aligned_cols=70 Identities=13% Similarity=0.087 Sum_probs=47.9
Q ss_pred HHhHHHHHHHHHhCCCceE---EEeCCChHHHHHHHHHHcC--CCEEEEecccCh--hhHHHHHHHHHHHHhCCeEEEEe
Q 005723 57 KHSLSHLDSSLRSLGTSLV---TKRSTDSVSSLLEVVKATG--ATQLFFNHLYDP--LSLVRDHRAKEALTAQGIAVRSF 129 (681)
Q Consensus 57 ~esL~dL~~~L~~~G~~L~---v~~~g~~~~~L~~L~~~~~--~~~V~~n~~y~p--~~~~rD~~v~~~l~~~gI~v~~~ 129 (681)
.+.|..--+.|++.|+... +.. +++...|.+.+.+++ ++.|+..-..-. ..+.||.. .-++..|++|..+
T Consensus 57 ~~~l~~sl~aL~~~G~~a~~G~v~d-~~Pl~AL~~~v~~~~~~~deiIV~T~Ph~vs~~fh~Dwa--srAr~~gvPVlhl 133 (138)
T 2iel_A 57 EEEAAAAKRALEAQGIPVEEAKAGD-ISPLLAIEEELLAHPGAYQGIVLSTLPPGLSRWLRLDVH--TQAERFGLPVIHV 133 (138)
T ss_dssp HHHHHHHHHHHHTTTCCCSEEEEEE-SSHHHHHHHHHHHSTTSCSEEEEEECCTTTCHHHHTTHH--HHGGGGSSCEEEE
T ss_pred HHHHHHHHHHHHHcCCcccccccCC-CChHHHHHHHHHhcCCCCceEEEEcCCchHHHHHhccHH--HHHHhcCCCEEEE
Confidence 4667777777888998864 443 689999999999999 999888743222 22344432 3344489988654
No 57
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=23.56 E-value=2.7e+02 Score=27.39 Aligned_cols=72 Identities=17% Similarity=0.206 Sum_probs=45.0
Q ss_pred HHHHhHHHHHHHHHhCCCceEEEeCC-Ch---HHHHHHHHHHcCCCEEEEecccChhhHHHHHHHHHHHHhCCeEEEEec
Q 005723 55 WLKHSLSHLDSSLRSLGTSLVTKRST-DS---VSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFN 130 (681)
Q Consensus 55 FL~esL~dL~~~L~~~G~~L~v~~~g-~~---~~~L~~L~~~~~~~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~~~ 130 (681)
|..+-+..+.+.++++|..+.+.... +. .+.+..++. .+++.|++.-. ++.. .+..+ +.+.+.||++..++
T Consensus 17 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~-~~vdgiIi~~~-~~~~--~~~~~-~~~~~~giPvV~~~ 91 (330)
T 3uug_A 17 RWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVT-KGVKVLVIASI-DGTT--LSDVL-KQAGEQGIKVIAYD 91 (330)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHH-HTCSEEEECCS-SGGG--GHHHH-HHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHH-cCCCEEEEEcC-Cchh--HHHHH-HHHHHCCCCEEEEC
Confidence 55667778888899999998776533 22 223444444 58999987621 1111 11223 34667899999886
Q ss_pred C
Q 005723 131 A 131 (681)
Q Consensus 131 ~ 131 (681)
.
T Consensus 92 ~ 92 (330)
T 3uug_A 92 R 92 (330)
T ss_dssp S
T ss_pred C
Confidence 4
No 58
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=23.16 E-value=1.7e+02 Score=28.46 Aligned_cols=71 Identities=11% Similarity=0.149 Sum_probs=45.7
Q ss_pred HHHHhHHHHHHHHHhCCCceEEEeCCChHH---HHHHHHHHcCCCEEEEecccChhhHHHHHHHHHHHHhCCeEEEEecC
Q 005723 55 WLKHSLSHLDSSLRSLGTSLVTKRSTDSVS---SLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNA 131 (681)
Q Consensus 55 FL~esL~dL~~~L~~~G~~L~v~~~g~~~~---~L~~L~~~~~~~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~~~~ 131 (681)
|..+-+..+.+.+++.|..+++.......+ .+.+.+.+.+++.|++.-... ...+.+.+.+.||++..++.
T Consensus 22 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~------~~~~~~~~~~~~iPvV~~~~ 95 (291)
T 3egc_A 22 FFAEVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG------EHDYLRTELPKTFPIVAVNR 95 (291)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS------CCHHHHHSSCTTSCEEEESS
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC------ChHHHHHhhccCCCEEEEec
Confidence 566778888889999999998765432222 233445566899988763211 11233456678999988764
No 59
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=23.07 E-value=2.7e+02 Score=27.04 Aligned_cols=72 Identities=15% Similarity=0.256 Sum_probs=45.1
Q ss_pred HHHHhHHHHHHHHHhCCCceEEEeCCChH---HHHHHHHHHcCCCEEEEecccChhhHHHHHHHHHHHHhCCeEEEEecC
Q 005723 55 WLKHSLSHLDSSLRSLGTSLVTKRSTDSV---SSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNA 131 (681)
Q Consensus 55 FL~esL~dL~~~L~~~G~~L~v~~~g~~~---~~L~~L~~~~~~~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~~~~ 131 (681)
|..+-+..+.+.++++|..+++....+.. +.+..++ +.+++.|++... ++.. ....+ +.+.+.||+|..++.
T Consensus 16 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~-~~~vdgiii~~~-~~~~--~~~~~-~~~~~~~iPvV~~~~ 90 (306)
T 8abp_A 16 WFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLA-ASGAKGFVICTP-DPKL--GSAIV-AKARGYDMKVIAVDD 90 (306)
T ss_dssp HHHHHHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHH-HTTCCEEEEECS-CGGG--HHHHH-HHHHHTTCEEEEESS
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHH-HcCCCEEEEeCC-Cchh--hHHHH-HHHHHCCCcEEEeCC
Confidence 66677778888888899998776544332 2344444 358999887632 1111 11223 345678999998874
No 60
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=22.73 E-value=3e+02 Score=23.63 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=32.3
Q ss_pred HHHHHHHHHcCCCEEEEecccChhhHHHHHHHHHHHHhCCeEEEEecC
Q 005723 84 SSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNA 131 (681)
Q Consensus 84 ~~L~~L~~~~~~~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~~~~ 131 (681)
+.|.+++++++++.|+..-.. ....+-+++.+.|.+.|+.+....+
T Consensus 55 ~~l~~~~~~~~id~viia~~~--~~~~~~~~i~~~l~~~gv~v~~vP~ 100 (141)
T 3nkl_A 55 KYLERLIKKHCISTVLLAVPS--ASQVQKKVIIESLAKLHVEVLTIPN 100 (141)
T ss_dssp GGHHHHHHHHTCCEEEECCTT--SCHHHHHHHHHHHHTTTCEEEECCC
T ss_pred HHHHHHHHHCCCCEEEEeCCC--CCHHHHHHHHHHHHHcCCeEEECCC
Confidence 458889999999999887321 1223334566778899999887653
No 61
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=21.45 E-value=2.6e+02 Score=26.78 Aligned_cols=66 Identities=9% Similarity=0.071 Sum_probs=47.0
Q ss_pred HhHHHHHHHHHhCCCceEEEeC-----CChHHHHHHHHHHcCCCEEEEecccChhhHHHHHHHHHHHHhCCeEEEE
Q 005723 58 HSLSHLDSSLRSLGTSLVTKRS-----TDSVSSLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRS 128 (681)
Q Consensus 58 esL~dL~~~L~~~G~~L~v~~~-----g~~~~~L~~L~~~~~~~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~ 128 (681)
+.++++++.|++.|+.+..... .+......++++..|+..|++.-. ...+ +.+.+.+++.||.+-.
T Consensus 63 ~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~~~--~~~~---~~l~~~a~~~gv~l~~ 133 (262)
T 3p6l_A 63 QTQKEIKELAASKGIKIVGTGVYVAEKSSDWEKMFKFAKAMDLEFITCEPA--LSDW---DLVEKLSKQYNIKISV 133 (262)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECCSSTTHHHHHHHHHHHTTCSEEEECCC--GGGH---HHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHcCCeEEEEeccCCccHHHHHHHHHHHHHcCCCEEEecCC--HHHH---HHHHHHHHHhCCEEEE
Confidence 4588899999999999765431 234556778899999999998732 2222 3567778888987643
No 62
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=21.20 E-value=4.4e+02 Score=24.22 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=45.0
Q ss_pred HHHHHHhCCCceEEEeCCChHHHHHHHHHHc--CCCEEEEecc-cChhhHHHHHHHHHHHHhCCeEEEEecCCeeeCCcc
Q 005723 63 LDSSLRSLGTSLVTKRSTDSVSSLLEVVKAT--GATQLFFNHL-YDPLSLVRDHRAKEALTAQGIAVRSFNADLLYEPWD 139 (681)
Q Consensus 63 L~~~L~~~G~~L~v~~~g~~~~~L~~L~~~~--~~~~V~~n~~-y~p~~~~rD~~v~~~l~~~gI~v~~~~~~~L~~p~~ 139 (681)
|++.-.++|+.|.++.. +.+..|.+.+++. +++.|+.|.. |+-.+. ++++++...++++..++-+.++.+++
T Consensus 35 l~~~a~~~g~~l~~~QS-N~EGeLId~Ih~a~~~~dgiIINpgA~THtSv----AlrDAl~~v~~P~VEVHiSNi~aRE~ 109 (154)
T 1uqr_A 35 LQQSAQAQGYELDYFQA-NGEESLINRIHQAFQNTDFIIINPGAFTHTSV----AIRDALLAVSIPFIEVHLSNVHAREP 109 (154)
T ss_dssp HHHHHHHTTCEEEEEEC-SSHHHHHHHHHHTTTTCCEEEEECTTHHHHCH----HHHHHHHHHTCCEEEEESSCGGGSCG
T ss_pred HHHHHHHCCCEEEEEee-CCHHHHHHHHHHhhhcCcEEEECcchhccchH----HHHHHHHhCCCCEEEEEecCcccccc
Confidence 33444556999988864 4455555444443 4778999843 333343 45556666789999988766665443
Q ss_pred c
Q 005723 140 V 140 (681)
Q Consensus 140 i 140 (681)
+
T Consensus 110 F 110 (154)
T 1uqr_A 110 F 110 (154)
T ss_dssp G
T ss_pred c
Confidence 3
No 63
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=20.54 E-value=1.1e+02 Score=29.35 Aligned_cols=72 Identities=14% Similarity=0.210 Sum_probs=37.1
Q ss_pred HHHHhHHHHHHHHHhCCCceEEEeCCCh---HHHHHHH-HHHcCCCEEEE-ecccChhhHHHHHHHHHHHHhCCeEEEEe
Q 005723 55 WLKHSLSHLDSSLRSLGTSLVTKRSTDS---VSSLLEV-VKATGATQLFF-NHLYDPLSLVRDHRAKEALTAQGIAVRSF 129 (681)
Q Consensus 55 FL~esL~dL~~~L~~~G~~L~v~~~g~~---~~~L~~L-~~~~~~~~V~~-n~~y~p~~~~rD~~v~~~l~~~gI~v~~~ 129 (681)
+|.++...|...+ ..|..|++.- .+. ...|.+. .+.-||+.|++ ..+|....-.-. .-.+.|++.||+|...
T Consensus 69 Ai~~a~~~l~~~~-~~g~TlYvTl-ePC~~Ca~aIi~al~~~~gI~rVV~~~~d~~~~~p~~~-~g~~~L~~aGI~V~~~ 145 (190)
T 2nyt_A 69 FFNTILPAFDPAL-RYNVTWYVSS-SPCAACADRIIKTLSKTKNLRLLILVGRLFMWEEPEIQ-AALKKLKEAGCKLRIM 145 (190)
T ss_pred HHHHHHHhcCccc-cCCeEEEEEc-ChHHHHHHHHHHhhhhcCCccEEEEEeecCCcCChHHH-HHHHHHHHCCCEEEEe
Confidence 5555443332232 2388888753 232 2222222 12228999888 455532111112 3445788999999864
No 64
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=20.19 E-value=4.7e+02 Score=25.83 Aligned_cols=72 Identities=10% Similarity=0.150 Sum_probs=46.4
Q ss_pred HHHHhHHHHHHHHHhCCCceEEEeCCChHH---HHHHHHHHcCCCEEEEecccChhhHHHHHHHHHHHHhCCeEEEEecC
Q 005723 55 WLKHSLSHLDSSLRSLGTSLVTKRSTDSVS---SLLEVVKATGATQLFFNHLYDPLSLVRDHRAKEALTAQGIAVRSFNA 131 (681)
Q Consensus 55 FL~esL~dL~~~L~~~G~~L~v~~~g~~~~---~L~~L~~~~~~~~V~~n~~y~p~~~~rD~~v~~~l~~~gI~v~~~~~ 131 (681)
|..+-+..+.+.+++.|..+++.......+ .+.+.+.+.+++.|++.-.... +..+.+.+++.||++..++.
T Consensus 77 ~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-----~~~~~~~~~~~~iPvV~~~~ 151 (338)
T 3dbi_A 77 YFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLS-----VDEIDDIIDAHSQPIMVLNR 151 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSC-----HHHHHHHHHHCSSCEEEESS
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC-----hHHHHHHHHcCCCCEEEEcC
Confidence 666778888889999999998765332222 1334445568999888632111 12355667778998887753
Done!