Query 005724
Match_columns 681
No_of_seqs 257 out of 855
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 05:40:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005724.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005724hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rip_A Gamma-tubulin complex c 100.0 6.8E-91 2.3E-95 799.4 53.8 589 35-680 1-651 (677)
2 3t98_B Nucleoporin NUP58/NUP45 49.6 84 0.0029 25.1 8.1 55 111-165 6-64 (93)
3 3obv_E Protein diaphanous homo 14.9 8.5E+02 0.029 25.4 10.9 27 143-169 279-305 (457)
4 1w53_A Phosphoserine phosphata 10.7 5E+02 0.017 20.1 5.5 47 534-584 32-80 (84)
5 4e17_B Catenin alpha-1; four h 10.5 2.2E+02 0.0076 18.7 2.8 16 115-130 21-36 (40)
6 2wx4_A DCP1, decapping protein 8.5 2.5E+02 0.0086 19.1 2.5 19 544-562 25-43 (46)
7 2j6y_A Phosphoserine phosphata 8.2 8.5E+02 0.029 19.9 7.0 47 539-589 38-85 (111)
8 2wx3_A MRNA-decapping enzyme 1 8.2 3.3E+02 0.011 19.0 3.0 18 544-561 27-44 (51)
9 2rpa_A Katanin P60 ATPase-cont 8.1 4E+02 0.014 20.4 3.9 35 335-369 10-44 (78)
10 4a64_A Cullin-4B, CUL4B, CUL-4 7.4 1.4E+03 0.046 22.6 9.0 73 501-579 269-346 (354)
No 1
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.8e-91 Score=799.35 Aligned_cols=589 Identities=22% Similarity=0.356 Sum_probs=480.6
Q ss_pred HHHHHHHHhcCCCCCceeeecccccCCCCCCCCCccceEecC---CCCHHHHHHHHHHHHHHhHHHHHHHHhhhccC---
Q 005724 35 VIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDA---SMDLALQEMAKRIFPLCESFVLTGQFVESRSQ--- 108 (681)
Q Consensus 35 lv~dlL~~L~G~~g~~~~~~~~~~~~~~~~~~~~~~~f~i~~---~~~~sl~~l~~~ll~~g~~~~~l~~fv~~~~~--- 108 (681)
||+|+|++|+|++|.+|++++ .++|+|++ .+++|+++++++++++|.+|++|++|++....
T Consensus 1 Ml~dlL~~L~G~~g~~i~~~~-------------~~~f~v~~~~~~l~~s~r~ll~~l~~lg~~y~~l~~fv~~~~~~~~ 67 (677)
T 3rip_A 1 MIHELLLALSGYPGSIFTWNK-------------RSGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQ 67 (677)
T ss_dssp CHHHHHHHHTTCCCSSSEEET-------------TTEEECCSCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC--
T ss_pred ChHHHHHHHcCCCCCceEecC-------------CCceeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 689999999999999999876 14788988 56799999999999999999999999996432
Q ss_pred -----C-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCcHHHHHHhhhhHHHHHHHHHHHHHHhhcCC
Q 005724 109 -----F-------KNGLVNHAFAASLRALLLDYEAMVAQLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANN 175 (681)
Q Consensus 109 -----~-------~~g~~~~Al~~~l~~~L~~y~~~i~~lE~~~~~-~~lsL~~L~~~~~~~~~~l~~L~~iv~~~~~~~ 175 (681)
+ ..|+|.+|||++|+++|++|+..|+++|+++.. +.+||..++..++|+...|+.|++|+.++..+.
T Consensus 68 ~~~~~~~~~~~~~~~g~v~~Al~~~i~~~L~~Y~~~i~~lE~~~l~~~~~sL~~l~~~l~~~~~~l~~L~~l~~~~~~~~ 147 (677)
T 3rip_A 68 QQDHHPSQQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQK 147 (677)
T ss_dssp -----------CCSCSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1 169999999999999999999999999999854 579999999999999999999999999887667
Q ss_pred CchhhHHHHHHHHHHHccCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceecCCCCcceeeeCcccccccc---------
Q 005724 176 FTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESL--------- 246 (681)
Q Consensus 176 ~~g~~lL~~L~~~~~~~~g~~~~~~~l~~ll~~~~~p~~~~l~~Wl~~G~l~D~~~EFfI~~~~~~~~~~l--------- 246 (681)
++||++|+.||+.+ .+|||.+++++.+|+..|++||+++|..||.+|+|.|||+||||++++..++...
T Consensus 148 ~~G~~lL~~L~~~~--~~Gd~~~~~~~~~Ll~~~~~~~~~~L~~Wl~~G~L~Dp~~EFFI~~~~~~~~~~~~~~~~~~~~ 225 (677)
T 3rip_A 148 IHGCQILETVYKHS--CGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDL 225 (677)
T ss_dssp CCTHHHHHHHHHHH--HSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSCSSEEEC-----------------
T ss_pred CCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCCcchheeEecccccccccccccccccc
Confidence 89999999999987 4999999999999999999999999999999999999999999998864321100
Q ss_pred -----c--------------cccchhhhhccccc-ccCCCcchHH-HHHHHHHhhhHHHHHHHhcCCCC-----CCCccc
Q 005724 247 -----T--------------QDYDAKYWRQRYSL-KDGIPSFLAN-IAGKILTTGKYLNVMRECGHSAQ-----VPTSEN 300 (681)
Q Consensus 247 -----~--------------~~~~~~~W~~~y~l-~~~vP~Fl~~-~a~~Il~~GK~l~~Lr~~~~~~~-----~p~~e~ 300 (681)
. ++....+|..+|.| .+++|+|+++ +|+|||.|||++|+||.++.... ++..+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~e~~~~~~w~~~y~l~~~~lP~Fl~~~~A~kIl~~GKsln~lr~~~~~~~~~~~~~~~~~~ 305 (677)
T 3rip_A 226 GIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESVQMFENQNVNLTRKGSILKNQED 305 (677)
T ss_dssp ---------------------------CCCCEEECGGGSCTTSCHHHHHHHHHHHHHHHTCCC-CCSCC---CTTCSHHH
T ss_pred ccccccccccchhhhhhcccccccccchhcceeecHhhCcCccCHHHHHHHHHhhHHHHHHHccCCCCCcccccccchHH
Confidence 0 00012479999999 7889999987 99999999999999999764311 000000
Q ss_pred ------ccccccC--CccchHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhccCc
Q 005724 301 ------SKLLSFG--SNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLD 372 (681)
Q Consensus 301 ------~~~~~f~--~~~~~~~~I~~~~~~~s~~l~~ll~~~~~L~~hL~~l~~~fLL~~Gdf~~~f~~~l~~~L~~~~~ 372 (681)
..+.... +...|...|+++|..+|+.|+++++++++|.+||+++|+||||++|||+..|++.++++|.+|+.
T Consensus 306 ~~~~~l~~L~~~~~~~~~~~e~~I~~~~~~as~~Ll~lL~~~~~L~~hL~~Lk~yfLL~~Gdf~~~f~~~~~~~L~~~~~ 385 (677)
T 3rip_A 306 TFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPT 385 (677)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCc
Confidence 0011110 11467889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHhhhcccCCCCCccceeeccccHHHHHHhhhccccccCCCCCCCCCCCCCcccceEEeeeecCCC
Q 005724 373 EITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWP 452 (681)
Q Consensus 373 ~~~~~~L~~~l~~al~~s~~~~d~~~~~l~~~~~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~d~l~L~Y~v~wP 452 (681)
+++..+|+..++.|++.+....++..+.+.+.+........ ..-... ...+ ......+.+..|||+|.|+|+||||
T Consensus 386 ~~~~~~L~~~L~~a~~~~~~~~~~~~~~L~~~i~~~~~~~~-~~~~~~--~~~~-~~~~~~~~~~~~~d~l~L~Y~v~~P 461 (677)
T 3rip_A 386 AVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHK-DATQAR--EGPS-RETSPREAPASGWAALGLSYKVQWP 461 (677)
T ss_dssp TTHHHHHHHHHHHHHHHTTCCCTTTGGGEEEEECCCC---------------------------CCTTTTEEEEECCCTT
T ss_pred ccCHHHHHHHHHHHHHHccCCchhhHhcceEEeeccccccc-cccccc--cccc-cccccccCCccchheEEEEEeCCCh
Confidence 99999999999999998766555666667666554321100 000000 0000 0011223457899999999999999
Q ss_pred cceeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchhhHHhHHHHHHHHHHHHHHHHHHHhhhcccccH
Q 005724 453 LSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNW 532 (681)
Q Consensus 453 L~liit~~~l~~Y~~iFr~Ll~lk~~~~~L~~~w~~~~~~r~~~~~~~~~~~~~~lr~~m~~Fv~~l~~Y~~~~VIe~~~ 532 (681)
|++|||+++|.+|++||+|||++||+++.|+++|+.++..+..........+ +.+|++|+|||+++++|++++||+++|
T Consensus 462 L~liit~~~l~~Y~~iF~~Ll~lkr~~~~L~~~w~~~~~~~~~~~~~~~~~~-~~lr~~m~~Fv~~l~~Y~~~~Vie~~w 540 (677)
T 3rip_A 462 LHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLKSNQTDAIK-WRLRNHMAFLVDNLQYYLQVDVLESQF 540 (677)
T ss_dssp GGGTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGCCSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987754433222223334 899999999999999999999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCChh
Q 005724 533 HVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSE 612 (681)
Q Consensus 533 ~~~~~~l~~a~~ld~l~~~H~~fL~~i~~~cfL~~~~l~~~l~~il~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (681)
.+|++++++++|+|+|+++|++||++|+++|||+.+++.++|.+|+++|++||..+++.. .. .
T Consensus 541 ~~~~~~l~~~~~~d~l~~~H~~~L~~i~~~c~L~~~~v~~~l~~il~~~~~F~~~~~~~~------~~-~---------- 603 (677)
T 3rip_A 541 SQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLCHSFCSLVSQNL------GP-L---------- 603 (677)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCC---------C----------
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhhc------cc-c----------
Confidence 999999999999999999999999999999999999999999999999999999986321 00 0
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHhcccccccchHHHHHHHHhccCCC
Q 005724 613 KFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFD 680 (681)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~F~~~~~~l~~~l~~~~~~~~~~~~L~~ll~rld~n 680 (681)
.+...+++++++++|++++..|+++|++++ +.++.++|++||+|||||
T Consensus 604 -------------------~~~~~~~~~~l~~~F~~~~~~L~~~l~~l~-~~~~~~~l~~Ll~rLd~N 651 (677)
T 3rip_A 604 -------------------DERGAAQLSILVKGFSRQSSLLFKILSSVR-NHQINSDLAQLLLRLDYN 651 (677)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSCCHHHHHHHHHHHHH
T ss_pred -------------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCchHHHHHHHHhCch
Confidence 011246799999999999999999999984 467789999999999998
No 2
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=49.56 E-value=84 Score=25.12 Aligned_cols=55 Identities=15% Similarity=0.217 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----CCCcHHHHHHhhhhHHHHHHHHH
Q 005724 111 NGLVNHAFAASLRALLLDYEAMVAQLEHQFRL----GRLSIQGLWFYCQPMLGSMQAVS 165 (681)
Q Consensus 111 ~g~~~~Al~~~l~~~L~~y~~~i~~lE~~~~~----~~lsL~~L~~~~~~~~~~l~~L~ 165 (681)
+..+.+-++.-.++.|..|+..|.++|+.+.. ...|.+.|..-++.....+-.|+
T Consensus 6 P~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLA 64 (93)
T 3t98_B 6 PADYFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALA 64 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999999999988643 35666666655555555544443
No 3
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=14.85 E-value=8.5e+02 Score=25.36 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=16.4
Q ss_pred CCCcHHHHHHhhhhHHHHHHHHHHHHH
Q 005724 143 GRLSIQGLWFYCQPMLGSMQAVSAVIH 169 (681)
Q Consensus 143 ~~lsL~~L~~~~~~~~~~l~~L~~iv~ 169 (681)
..+++..|...+......+..+..-+.
T Consensus 279 akvs~~~l~~dl~~L~~~l~~v~~~l~ 305 (457)
T 3obv_E 279 SRVSAENLQKSLDQMKKQIADVERDVQ 305 (457)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467787777666665555555544443
No 4
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=10.71 E-value=5e+02 Score=20.15 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=31.5
Q ss_pred HHHHHh-ccCCCHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHH
Q 005724 534 VMHNRL-QTAKSIDEVIQHHDFFLDKCLRECLLH-LPDLLKKVERLKSLCLQY 584 (681)
Q Consensus 534 ~~~~~l-~~a~~ld~l~~~H~~fL~~i~~~cfL~-~~~l~~~l~~il~~~~~F 584 (681)
+|-+.+ ++.-..++++..|.+++..+ ..+ ...+...++=++.+..-|
T Consensus 32 ~fs~~~iek~i~PEeiV~iHk~~i~el----~~~l~e~v~~Sfd~L~Evm~gy 80 (84)
T 1w53_A 32 KFSRKTIEHQIPPEEIISIHRKVLKEL----YPSLPEDVFHSLDFLIEVMIGY 80 (84)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH----CTTSCHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHcCCCHHHHHHHHHHHHHHh----cCCChHHHHHHHHHHHHHHHHh
Confidence 444443 45668999999999887765 444 566777666666655544
No 5
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=10.51 E-value=2.2e+02 Score=18.72 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 005724 115 NHAFAASLRALLLDYE 130 (681)
Q Consensus 115 ~~Al~~~l~~~L~~y~ 130 (681)
++|+-.+++.+|.+|.
T Consensus 21 CnavrqALQdLlseY~ 36 (40)
T 4e17_B 21 CNAVRQALQDLLSEYM 36 (40)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4566666666777665
No 6
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=8.48 E-value=2.5e+02 Score=19.08 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=10.6
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 005724 544 SIDEVIQHHDFFLDKCLRE 562 (681)
Q Consensus 544 ~ld~l~~~H~~fL~~i~~~ 562 (681)
|-+-+...|+.||..+.+.
T Consensus 25 D~~Fl~~iHeAYl~sl~~~ 43 (46)
T 2wx4_A 25 DKEFANKLHKAYLNGCSNL 43 (46)
T ss_dssp CTTHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 3455778899999887654
No 7
>2j6y_A Phosphoserine phosphatase RSBU; hydrolase, partner switching, protein phosphatase, RSBT, stress; 1.85A {Bacillus subtilis} PDB: 2j70_A 2j6z_A
Probab=8.22 E-value=8.5e+02 Score=19.94 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=36.0
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHH
Q 005724 539 LQTAKSIDEVIQHHDFFLDKCLRECLLH-LPDLLKKVERLKSLCLQYAAATQ 589 (681)
Q Consensus 539 l~~a~~ld~l~~~H~~fL~~i~~~cfL~-~~~l~~~l~~il~~~~~F~~~~~ 589 (681)
+++.-.+++++..|..++..+ +.+ ...+...++=++.+..-|.-.-+
T Consensus 38 iek~I~PEeiV~iHk~~i~~l----~~~l~e~v~~s~d~L~Evm~gyGlayr 85 (111)
T 2j6y_A 38 IEHQIPPEEIISIHRKVLKEL----YPSLPEDVFHSLDFLIEVMIGYGMAYQ 85 (111)
T ss_dssp HHTTCCHHHHHHHHHHHHHHH----CTTSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHHHHHHhHhHH
Confidence 345668999999999999887 566 56788877778888877776443
No 8
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=8.18 E-value=3.3e+02 Score=18.96 Aligned_cols=18 Identities=11% Similarity=0.194 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 005724 544 SIDEVIQHHDFFLDKCLR 561 (681)
Q Consensus 544 ~ld~l~~~H~~fL~~i~~ 561 (681)
|-+-+...|+.||..+.+
T Consensus 27 D~~Fl~~IHeAYl~sl~~ 44 (51)
T 2wx3_A 27 DSSFLSTLHEVYLQVLTK 44 (51)
T ss_dssp CHHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 456677788888887654
No 9
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=8.10 E-value=4e+02 Score=20.38 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=30.2
Q ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhc
Q 005724 335 YDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMK 369 (681)
Q Consensus 335 ~~L~~hL~~l~~~fLL~~Gdf~~~f~~~l~~~L~~ 369 (681)
..+.++++.-|.|-|+|+-|-...+++.+-..+.+
T Consensus 10 ~~i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k 44 (78)
T 2rpa_A 10 QMIVENVKLAREYALLGNYDSAMVYYQGVLDQMNK 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999888876655
No 10
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=7.37 E-value=1.4e+03 Score=22.59 Aligned_cols=73 Identities=11% Similarity=0.104 Sum_probs=46.7
Q ss_pred hHHhHHHHHH----HHHHHHHHHHHHHhhhcccccHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 005724 501 AISRSSLLCR----SMLKFINSLLHYLTFEVLEPNWHVMHNRL-QTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVE 575 (681)
Q Consensus 501 ~~~~~~~lr~----~m~~Fv~~l~~Y~~~~VIe~~~~~~~~~l-~~a~~ld~l~~~H~~fL~~i~~~cfL~~~~l~~~l~ 575 (681)
.+.+++.|.. .+-.+...+..|+...+.+- .... +...=+++|++.|+.| +.+...||-.++...+++.
T Consensus 269 dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~i-----v~~~~~~~~~V~~LL~l~~k~-~~iv~~~F~~d~~f~~al~ 342 (354)
T 4a64_A 269 DLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTI-----VINPEKDKTMRQELDDFKDKV-DHIIDICFLKNEKFINAMK 342 (354)
T ss_dssp HHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHH-----HHSCCSSSCHHHHHHHHHHHH-HHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHccccccHHHHHHHHHHHHHHHHHHH-----HcCccchHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHH
Confidence 3445554443 24467777777876654321 1111 2234579999999976 5667789999988888887
Q ss_pred HHHH
Q 005724 576 RLKS 579 (681)
Q Consensus 576 ~il~ 579 (681)
+-+.
T Consensus 343 ~af~ 346 (354)
T 4a64_A 343 EAFE 346 (354)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7644
Done!