Query 005724
Match_columns 681
No_of_seqs 257 out of 855
Neff 8.9
Searched_HMMs 13730
Date Mon Mar 25 05:40:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005724.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005724hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rkta2 a.121.1.1 (A:83-205) H 28.5 1.2E+02 0.0085 23.4 8.5 67 158-227 4-70 (123)
2 d1kxpd3 a.126.1.1 (D:405-473) 22.8 35 0.0025 23.4 3.2 40 529-571 8-57 (69)
3 d2hyja2 a.121.1.1 (A:83-200) P 19.2 1.7E+02 0.012 21.7 8.3 48 177-227 25-72 (118)
4 d2hyec2 a.118.17.1 (C:55-401) 11.5 4.2E+02 0.031 23.7 9.7 64 512-581 279-343 (347)
5 d1pb6a2 a.121.1.1 (A:86-211) H 10.2 88 0.0064 24.0 3.3 35 193-227 35-69 (126)
6 d2id3a2 a.121.1.1 (A:81-203) P 9.8 3.4E+02 0.024 20.3 6.9 50 175-227 23-72 (123)
7 d2i10a2 a.121.1.1 (A:79-194) P 8.9 92 0.0067 23.4 2.8 52 174-228 22-73 (116)
8 d1ldja2 a.118.17.1 (A:17-410) 8.5 3.3E+02 0.024 25.1 7.6 76 501-582 302-387 (394)
9 d1w53a_ a.186.1.2 (A:) Phospho 6.8 4.1E+02 0.03 18.8 5.8 42 539-584 38-80 (84)
10 d1v9da_ a.207.1.1 (A:) Diaphan 5.6 1.2E+02 0.009 27.8 2.3 19 79-97 125-143 (332)
No 1
>d1rkta2 a.121.1.1 (A:83-205) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=28.53 E-value=1.2e+02 Score=23.36 Aligned_cols=67 Identities=9% Similarity=0.052 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHccCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceec
Q 005724 158 LGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 227 (681)
Q Consensus 158 ~~~l~~L~~iv~~~~~~~~~g~~lL~~L~~~~~~~~g~~~~~~~l~~ll~~~~~p~~~~l~~Wl~~G~l~ 227 (681)
...+.++..++..+... +-.+-...++...+..-||.++..+.+.+.....-+...|..++..|.+.
T Consensus 4 ~~~~~~~d~~~~~l~~~---~~~~~~~~~E~~~~a~Rdpeir~~~~~~~~~~~~~l~~~i~~g~~~Ge~~ 70 (123)
T d1rkta2 4 ASISSYLDELTEGLRDV---ADTLAPVQFEYLVTAWRNEERRQYLEKRYDLFVERFSRLLQKGIDQGEFQ 70 (123)
T ss_dssp HHHHHHHHHHHHHTTTG---GGSSHHHHHHHHHGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHhc---CcchHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 34455566666665422 22233344444433467999999999999998888888888888888763
No 2
>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.80 E-value=35 Score=23.38 Aligned_cols=40 Identities=20% Similarity=0.527 Sum_probs=29.1
Q ss_pred cccHHHHHHHhcc----------CCCHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 005724 529 EPNWHVMHNRLQT----------AKSIDEVIQHHDFFLDKCLRECLLHLPDLL 571 (681)
Q Consensus 529 e~~~~~~~~~l~~----------a~~ld~l~~~H~~fL~~i~~~cfL~~~~l~ 571 (681)
+..|.+|.++|.+ ...+.+|.+.|.+|-..| |-+++|+++
T Consensus 8 e~tFte~kkkL~e~lr~k~P~as~~~l~~mVekrsdfASkC---CsiNsPPlY 57 (69)
T d1kxpd3 8 ENTFTEYKKKLAERLKAKLPDATPKELAKLVNKRSDFASNC---CSINSPPLY 57 (69)
T ss_dssp TSCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHH---SSTTCCHHH
T ss_pred hccHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhHHHHHh---hcCCCCchh
Confidence 4456666666652 347899999999998875 778888863
No 3
>d2hyja2 a.121.1.1 (A:83-200) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=19.21 E-value=1.7e+02 Score=21.72 Aligned_cols=48 Identities=15% Similarity=0.060 Sum_probs=39.1
Q ss_pred chhhHHHHHHHHHHHccCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceec
Q 005724 177 TGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 227 (681)
Q Consensus 177 ~g~~lL~~L~~~~~~~~g~~~~~~~l~~ll~~~~~p~~~~l~~Wl~~G~l~ 227 (681)
.||.+.+..-+. ...++.+++.+...+.....-+.+.|......|.+.
T Consensus 25 ~GC~~~~~~~E~---~~~~~~ir~~l~~~~~~~~~~l~~~l~~a~~~G~i~ 72 (118)
T d2hyja2 25 GGCLLTAALSEY---DGRPGRVRDAVAEVWSRWREQLRADLTAAVDKGELP 72 (118)
T ss_dssp TSCHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CCChhHhHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 478777777664 467889999999999998888888888888888763
No 4
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.53 E-value=4.2e+02 Score=23.70 Aligned_cols=64 Identities=6% Similarity=0.127 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhhhcccccHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 005724 512 MLKFINSLLHYLTFEVLEPNWHVMHNRLQ-TAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLC 581 (681)
Q Consensus 512 m~~Fv~~l~~Y~~~~VIe~~~~~~~~~l~-~a~~ld~l~~~H~~fL~~i~~~cfL~~~~l~~~l~~il~~~ 581 (681)
+..+...+..|+...+-+ .....+ ...=+++++..|+.| +.+...||-.++.+.+++.+.+.-+
T Consensus 279 ~~~l~~~f~~~i~~~G~~-----~v~~~~~~~~~V~~ll~l~~k~-~~li~~~F~~d~~f~~~l~~af~~~ 343 (347)
T d2hyec2 279 QQALLQHWSEYIKTFGTA-----IVINPEKDKDMVQDLLDFKDKV-DHVIEVCFQKNERFVNLMKESFETF 343 (347)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHSCGGGTTTHHHHHHHHHHHH-HHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----HHhCcccchHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 345666666676655421 111111 122378899999975 5667789999998888888876544
No 5
>d1pb6a2 a.121.1.1 (A:86-211) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=10.20 E-value=88 Score=24.04 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=27.5
Q ss_pred cCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceec
Q 005724 193 AGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 227 (681)
Q Consensus 193 ~g~~~~~~~l~~ll~~~~~p~~~~l~~Wl~~G~l~ 227 (681)
+|.+.+...+...+........+.|..|+..|.+.
T Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~il~~g~~~G~~r 69 (126)
T d1pb6a2 35 AGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLA 69 (126)
T ss_dssp TTCTTTHHHHHTHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 56666667777777777788888999999999774
No 6
>d2id3a2 a.121.1.1 (A:81-203) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=9.84 E-value=3.4e+02 Score=20.27 Aligned_cols=50 Identities=10% Similarity=0.169 Sum_probs=37.4
Q ss_pred CCchhhHHHHHHHHHHHccCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceec
Q 005724 175 NFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 227 (681)
Q Consensus 175 ~~~g~~lL~~L~~~~~~~~g~~~~~~~l~~ll~~~~~p~~~~l~~Wl~~G~l~ 227 (681)
...++.++-.+.... ..+|.....+.+++...-.-+-.++...+-.|++.
T Consensus 23 ~p~~~~~~~~l~ae~---~~~p~l~~~~~~~~~~r~~~~~~il~rA~~RGEl~ 72 (123)
T d2id3a2 23 DPRQGRLFRALIAAS---LCNEQAAEALHRFYAVRVDEWAGCVRDAVARGEVP 72 (123)
T ss_dssp SHHHHHHHHHHHHHH---HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CcchHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 345666666555433 46678888888888888888888999999999884
No 7
>d2i10a2 a.121.1.1 (A:79-194) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=8.87 E-value=92 Score=23.41 Aligned_cols=52 Identities=12% Similarity=0.099 Sum_probs=40.7
Q ss_pred CCCchhhHHHHHHHHHHHccCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceecC
Q 005724 174 NNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDD 228 (681)
Q Consensus 174 ~~~~g~~lL~~L~~~~~~~~g~~~~~~~l~~ll~~~~~p~~~~l~~Wl~~G~l~D 228 (681)
...+||-+.+...+. ...++.+++.+...+......+...+......|.+.+
T Consensus 22 ~~p~GCl~~~~~~E~---~~~d~~i~~~l~~~~~~~~~~l~~~l~~a~~~Gel~~ 73 (116)
T d2i10a2 22 GQPFGCMTVQAGLAS---GEPHHEIVDLLTAAREQMRQTVLDRFEKALADGDLPA 73 (116)
T ss_dssp ----CCCCSSCBTTT---BCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCT
T ss_pred CCCCCCHHHHhHhhc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 355788887776553 3578999999999999999999999999999998854
No 8
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.49 E-value=3.3e+02 Score=25.12 Aligned_cols=76 Identities=9% Similarity=0.087 Sum_probs=47.9
Q ss_pred hHHhHHHHHHH----HHHHHHHHHHHHhhhcccccHHHHHHHhccC--C----CHHHHHHHHHHHHHHHHHHhcCCChHH
Q 005724 501 AISRSSLLCRS----MLKFINSLLHYLTFEVLEPNWHVMHNRLQTA--K----SIDEVIQHHDFFLDKCLRECLLHLPDL 570 (681)
Q Consensus 501 ~~~~~~~lr~~----m~~Fv~~l~~Y~~~~VIe~~~~~~~~~l~~a--~----~ld~l~~~H~~fL~~i~~~cfL~~~~l 570 (681)
.+.+++.|..+ +-.+...+..|+...+.+ ........ . =+++|+..|+. .+.+...||-.++.+
T Consensus 302 ~L~~lY~L~~rv~~~~~~l~~~~~~~I~~~G~~-----~i~~~~~~~~~~~~~~V~~ll~l~~~-~~~ii~~~F~~d~~f 375 (394)
T d1ldja2 302 DLGRMYNLVSRIQDGLGELKKLLETHIHNQGLA-----AIEKCGEAALNDPKMYVQTVLDVHKK-YNALVMSAFNNDAGF 375 (394)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-----HHHHHTTSGGGCHHHHHHHHHHHHHH-HHHHHHTTTTTCHHH
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-----HHHhhhhcccCChHHHHHHHHHHHHH-HHHHHHHHcCCCHHH
Confidence 34555544433 456667777777665422 22222211 1 26888998886 567788999999988
Q ss_pred HHHHHHHHHHHH
Q 005724 571 LKKVERLKSLCL 582 (681)
Q Consensus 571 ~~~l~~il~~~~ 582 (681)
.+++.+-+.-++
T Consensus 376 ~~~l~~af~~fi 387 (394)
T d1ldja2 376 VAALDKACGRFI 387 (394)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888765443
No 9
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=6.78 E-value=4.1e+02 Score=18.79 Aligned_cols=42 Identities=17% Similarity=0.284 Sum_probs=30.0
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHH
Q 005724 539 LQTAKSIDEVIQHHDFFLDKCLRECLLH-LPDLLKKVERLKSLCLQY 584 (681)
Q Consensus 539 l~~a~~ld~l~~~H~~fL~~i~~~cfL~-~~~l~~~l~~il~~~~~F 584 (681)
|++--+.++|+..|.+++..+ ..+ ...+...++=++.+..-|
T Consensus 38 iek~IsPEeIV~iHk~~l~el----~~~~~e~v~~Sfd~LlEVm~gy 80 (84)
T d1w53a_ 38 IEHQIPPEEIISIHRKVLKEL----YPSLPEDVFHSLDFLIEVMIGY 80 (84)
T ss_dssp HHTTCCHHHHHHHHHHHHHHH----CTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHH----CCCChHHHHHHHHHHHHHHHHc
Confidence 345568999999999988764 444 466777777776665544
No 10
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.55 E-value=1.2e+02 Score=27.80 Aligned_cols=19 Identities=0% Similarity=-0.038 Sum_probs=4.6
Q ss_pred CHHHHHHHHHHHHHHhHHH
Q 005724 79 DLALQEMAKRIFPLCESFV 97 (681)
Q Consensus 79 ~~sl~~l~~~ll~~g~~~~ 97 (681)
+..++.++.-+|.+|++..
T Consensus 125 S~~l~~~L~~iL~~GN~mN 143 (332)
T d1v9da_ 125 SENFSSLLELTLLVGNYMN 143 (332)
T ss_dssp CHHHHHCC-----------
T ss_pred ChhHHHHHHHHHHhcchhc
Confidence 3455666667777776644
Done!