BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005727
(680 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
Saccharomyces Cerevisiae Nab2
Length = 852
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Query: 231 LVPYYADILGAILPCISDKEEKIRVVARET-NEELRAIKADPADGFDVGPILSIATRQLS 289
++PY +++ ++ C+SDK+ +R + T + + + P D + + P+++ +++
Sbjct: 394 MIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELLKRIL 452
Query: 290 SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349
+ + A +TL TE++ +L I DTL+ A S + +L++ + +A
Sbjct: 453 DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 512
Query: 350 DLQH 353
+ H
Sbjct: 513 SVGH 516
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
pdb|2Z5J|A Chain A, Free Transportin 1
pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
Length = 890
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Query: 231 LVPYYADILGAILPCISDKEEKIRVVARET-NEELRAIKADPADGFDVGPILSIATRQLS 289
++PY +++ ++ C+SDK+ +R + T + + + P D + + P+++ +++
Sbjct: 432 MIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELLKRIL 490
Query: 290 SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349
+ + A +TL TE++ +L I DTL+ A S + +L++ + +A
Sbjct: 491 DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 550
Query: 350 DLQH 353
+ H
Sbjct: 551 SVGH 554
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
Length = 865
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Query: 231 LVPYYADILGAILPCISDKEEKIRVVARET-NEELRAIKADPADGFDVGPILSIATRQLS 289
++PY +++ ++ C+SDK+ +R + T + + + P D + + P+++ +++
Sbjct: 407 MIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELLKRIL 465
Query: 290 SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349
+ + A +TL TE++ +L I DTL+ A S + +L++ + +A
Sbjct: 466 DSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD 525
Query: 350 DLQH 353
+ H
Sbjct: 526 SVGH 529
>pdb|2Z23|A Chain A, Crystal Structure Of Y.Pestis Oligo Peptide Binding
Protein Oppa With Tri-Lysine Ligand
Length = 517
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 21/88 (23%)
Query: 451 ASWC---HSPMAIISLCLLA---QTYHHASAVIQSLVEEDLNVK-----------FLVQL 493
A+WC + P + +++ L T H+ S+V L+E+ L VK +QL
Sbjct: 414 AAWCADYNEPSSFLNMMLSNSSNNTTHYKSSVFDKLIEDTLKVKSEKERADLYQQAEIQL 473
Query: 494 DKLIRLLETPIFAYLRLQLLEP--GRYT 519
DK ++ P+F Y+ +L++P G YT
Sbjct: 474 DKDSAIV--PVFYYVSARLVKPYVGGYT 499
>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 890
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 232 VPYYADILGAILPCISDKEEKIRVVARET-NEELRAIKADPADGFDVGPILSIATRQLSS 290
+PY +++ ++ C+SDK+ +R + T + + + P D + + P+ + +++
Sbjct: 433 IPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLXTELLKRILD 491
Query: 291 EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD 350
+ + A +TL TE++ +L I DTL+ A S + +L++ + +A
Sbjct: 492 SNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADS 551
Query: 351 LQH 353
+ H
Sbjct: 552 VGH 554
>pdb|4AFK|A Chain A, In Meso Structure Of Alginate Transporter, Alge, From
Pseudomonas Aeruginosa, Pao1
Length = 458
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 286 RQLSSEWEATRIEALHWI--STLLNRH 310
R+ S +W+ T IEAL+W +TLLN H
Sbjct: 122 REDSGQWQDTNIEALNWSFETTLLNAH 148
>pdb|3RBH|A Chain A, Structure Of Alginate Export Protein Alge From Pseudomonas
Aeruginosa
pdb|3RBH|B Chain B, Structure Of Alginate Export Protein Alge From Pseudomonas
Aeruginosa
pdb|3RBH|C Chain C, Structure Of Alginate Export Protein Alge From Pseudomonas
Aeruginosa
pdb|3RBH|D Chain D, Structure Of Alginate Export Protein Alge From Pseudomonas
Aeruginosa
Length = 479
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 286 RQLSSEWEATRIEALHWI--STLLNRH 310
R+ S +W+ T IEAL+W +TLLN H
Sbjct: 143 REDSGQWQDTNIEALNWSFETTLLNAH 169
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSA 92
++P + + D+ RVRY + + K V + I + A L D +A V++A
Sbjct: 237 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAA 294
Query: 93 A-HLLDRLVKDIVTESDQFSI-EEFIPLLRERMNVLNPYVRQFLVGWITVLDSV 144
A H + +++ + + I + +P ++E ++ N +V+ L I L +
Sbjct: 295 ASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPI 348
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSA 92
++P + + D+ RVRY + + K V + I + A L D +A V++A
Sbjct: 235 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAA 292
Query: 93 A-HLLDRLVKDIVTESDQFSI-EEFIPLLRERMNVLNPYVRQFLVGWITVLDSV 144
A H + +++ + + I + +P ++E ++ N +V+ L I L +
Sbjct: 293 ASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPI 346
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSA 92
++P + + D+ RVRY + + K V + I + A L D +A V++A
Sbjct: 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAA 300
Query: 93 A-HLLDRLVKDIVTESDQFSI-EEFIPLLRERMNVLNPYVRQFLVGWITVLDSV 144
A H + +++ + + I + +P ++E ++ N +V+ L I L +
Sbjct: 301 ASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPI 354
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSA 92
++P + + D+ RVRY + + K V + I + A L D +A V++A
Sbjct: 244 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAA 301
Query: 93 A-HLLDRLVKDIVTESDQFSI-EEFIPLLRERMNVLNPYVRQFLVGWITVLDSV 144
A H + +++ + + I + +P ++E ++ N +V+ L I L +
Sbjct: 302 ASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPI 355
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSA 92
++P + + D+ RVRY + + K V + I + A L D +A V++A
Sbjct: 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAA 300
Query: 93 A-HLLDRLVKDIVTESDQFSI-EEFIPLLRERMNVLNPYVRQFLVGWITVLDSV 144
A H + +++ + + I + +P ++E ++ N +V+ L I L +
Sbjct: 301 ASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPI 354
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 589
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 4/114 (3%)
Query: 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSA 92
++P + + D+ RVRY + + K V + I + A L D +A V++A
Sbjct: 244 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--ITKTDLVPAFQNLMKDCEAEVRAA 301
Query: 93 A-HLLDRLVKDIVTESDQFSI-EEFIPLLRERMNVLNPYVRQFLVGWITVLDSV 144
A H + +++ + + I + +P ++E ++ N +V+ L I L +
Sbjct: 302 ASHKVKEFCENLSADCRENVIMTQILPCIKELVSDANQHVKSALASVIMGLSPI 355
>pdb|2DCH|X Chain X, Crystal Structure Of Archaeal Intron-Encoded Homing
Endonuclease I- Tsp061i
Length = 216
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 219 WINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL--RAIKADPADGFD 276
W+ + VK GD+ YY +G I K +++R +T +L RA +AD +DG++
Sbjct: 128 WVEQVVKRAGDK--SYYYIRIG-----IKTKSKELRDWIAQTLNDLGIRASRADKSDGYE 180
Query: 277 V 277
V
Sbjct: 181 V 181
>pdb|2X49|A Chain A, Crystal Structure Of The C-Terminal Domain Of Inva
pdb|2X4A|A Chain A, Crystal Structure Of The C-Terminal Domain Of Inva
Length = 333
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 13/130 (10%)
Query: 10 EIIVEQFLLYADLF----FYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG 65
EI VEQF +Y DL + E + I P + S Q V + E L + V+R
Sbjct: 65 EIRVEQFTVYFDLMRVVNYSDEVVSFGINPTIHQQGSSQYFWVTHEEGEKLRELGYVLRN 124
Query: 66 DFIIFFNQIFDALCKLSADSDANVQSAAHLLDR-------LVKDIVTESDQFSIEEFIP- 117
++ + L + + + +Q H+LD+ L+K+++ + I E +
Sbjct: 125 ALDELYHCLAVTLAR-NVNEYFGIQETKHMLDQLEAKFPDLLKEVLRHATVQRISEVLQR 183
Query: 118 LLRERMNVLN 127
LL ER++V N
Sbjct: 184 LLSERVSVRN 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,137,304
Number of Sequences: 62578
Number of extensions: 621293
Number of successful extensions: 2188
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2170
Number of HSP's gapped (non-prelim): 43
length of query: 680
length of database: 14,973,337
effective HSP length: 105
effective length of query: 575
effective length of database: 8,402,647
effective search space: 4831522025
effective search space used: 4831522025
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)