Query 005727
Match_columns 680
No_of_seqs 284 out of 685
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 12:50:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005727.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005727hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0212 Uncharacterized conser 100.0 3E-144 7E-149 1160.2 55.5 573 26-658 78-657 (675)
2 PF11916 Vac14_Fig4_bd: Vacuol 100.0 1.4E-71 3E-76 535.5 20.0 182 368-584 1-182 (182)
3 KOG2023 Nuclear transport rece 100.0 2.4E-40 5.1E-45 362.1 31.2 445 28-480 86-615 (885)
4 KOG0212 Uncharacterized conser 100.0 7.1E-30 1.5E-34 276.7 38.2 523 35-590 3-580 (675)
5 PF12755 Vac14_Fab1_bd: Vacuol 99.8 1.2E-20 2.7E-25 167.4 10.2 78 25-102 20-97 (97)
6 KOG2171 Karyopherin (importin) 99.8 5.4E-17 1.2E-21 189.7 39.5 316 27-349 74-418 (1075)
7 KOG0915 Uncharacterized conser 99.8 3.8E-16 8.3E-21 185.0 32.0 313 4-365 976-1324(1702)
8 KOG2171 Karyopherin (importin) 99.7 4.3E-14 9.3E-19 165.7 45.7 352 8-366 371-786 (1075)
9 KOG2023 Nuclear transport rece 99.7 4.8E-14 1E-18 156.5 30.8 345 30-374 213-765 (885)
10 KOG1242 Protein containing ada 99.7 9.7E-14 2.1E-18 154.7 32.0 390 5-402 69-500 (569)
11 KOG1242 Protein containing ada 99.7 6.4E-14 1.4E-18 156.1 29.2 320 33-368 175-504 (569)
12 PRK09687 putative lyase; Provi 99.6 6.5E-13 1.4E-17 140.1 26.1 260 27-347 18-280 (280)
13 KOG1241 Karyopherin (importin) 99.5 1.9E-12 4.1E-17 146.0 24.7 333 32-371 90-464 (859)
14 PRK13800 putative oxidoreducta 99.5 4.3E-12 9.4E-17 153.6 28.4 244 33-348 622-866 (897)
15 KOG0915 Uncharacterized conser 99.5 1.9E-11 4.1E-16 145.9 31.3 360 25-389 1032-1431(1702)
16 PF01602 Adaptin_N: Adaptin N 99.4 6.2E-10 1.3E-14 126.7 34.0 263 26-312 108-373 (526)
17 PRK13800 putative oxidoreducta 99.4 8.9E-11 1.9E-15 142.3 26.6 244 31-345 651-895 (897)
18 PF01602 Adaptin_N: Adaptin N 99.4 1.5E-09 3.3E-14 123.4 34.0 367 27-426 37-411 (526)
19 KOG1824 TATA-binding protein-i 99.3 2.5E-10 5.4E-15 131.2 25.8 291 27-360 890-1202(1233)
20 PRK09687 putative lyase; Provi 99.3 8.1E-10 1.8E-14 116.7 26.5 239 75-366 25-265 (280)
21 KOG1824 TATA-binding protein-i 99.3 8E-08 1.7E-12 111.1 43.7 492 29-530 171-781 (1233)
22 KOG1241 Karyopherin (importin) 99.2 1.8E-08 3.9E-13 114.5 31.9 294 112-420 362-732 (859)
23 KOG0213 Splicing factor 3b, su 99.2 1.5E-08 3.2E-13 114.4 29.3 370 25-401 546-970 (1172)
24 COG5215 KAP95 Karyopherin (imp 99.2 2.8E-07 6.1E-12 102.0 36.7 313 22-348 87-436 (858)
25 KOG0213 Splicing factor 3b, su 99.1 4.1E-08 8.9E-13 110.9 30.1 390 26-435 435-926 (1172)
26 PF12755 Vac14_Fab1_bd: Vacuol 99.1 1.5E-10 3.1E-15 103.1 8.1 95 88-184 1-96 (97)
27 PLN03200 cellulose synthase-in 99.1 4.9E-08 1.1E-12 123.3 31.5 343 37-393 409-772 (2102)
28 PLN03200 cellulose synthase-in 99.1 2E-08 4.4E-13 126.7 26.9 350 33-389 447-864 (2102)
29 PTZ00429 beta-adaptin; Provisi 99.0 5.1E-06 1.1E-10 98.3 43.3 217 33-264 106-324 (746)
30 KOG0166 Karyopherin (importin) 99.0 1.7E-07 3.6E-12 104.9 27.6 392 34-483 68-487 (514)
31 PF12348 CLASP_N: CLASP N term 99.0 6.9E-09 1.5E-13 105.7 15.3 192 73-270 7-210 (228)
32 PF12348 CLASP_N: CLASP N term 99.0 1.6E-08 3.5E-13 102.9 18.0 190 112-348 5-205 (228)
33 PF10508 Proteasom_PSMB: Prote 99.0 7.5E-07 1.6E-11 101.7 32.7 259 78-349 43-319 (503)
34 PTZ00429 beta-adaptin; Provisi 99.0 3E-06 6.5E-11 100.2 38.1 358 38-424 38-400 (746)
35 PF10508 Proteasom_PSMB: Prote 98.9 1.4E-06 3E-11 99.6 31.3 331 30-370 75-447 (503)
36 COG5181 HSH155 U2 snRNP splice 98.9 1.8E-07 3.8E-12 104.2 21.7 366 26-401 352-775 (975)
37 KOG0211 Protein phosphatase 2A 98.9 4.2E-06 9.2E-11 98.4 32.8 383 9-402 212-603 (759)
38 PF12460 MMS19_C: RNAPII trans 98.9 2.7E-06 5.8E-11 95.0 30.1 330 27-363 33-413 (415)
39 COG5215 KAP95 Karyopherin (imp 98.8 1.5E-05 3.3E-10 88.7 34.4 333 27-368 257-692 (858)
40 KOG0211 Protein phosphatase 2A 98.8 1.3E-06 2.9E-11 102.5 26.9 322 14-348 298-624 (759)
41 KOG0891 DNA-dependent protein 98.7 7.7E-06 1.7E-10 105.1 32.0 450 32-515 480-997 (2341)
42 KOG0166 Karyopherin (importin) 98.7 4.5E-07 9.6E-12 101.5 17.1 348 32-402 109-483 (514)
43 COG5181 HSH155 U2 snRNP splice 98.6 3.4E-05 7.3E-10 86.6 28.5 301 31-348 520-869 (975)
44 KOG4224 Armadillo repeat prote 98.6 3.2E-06 6.9E-11 89.8 18.1 332 27-361 80-458 (550)
45 TIGR02270 conserved hypothetic 98.5 1.2E-05 2.7E-10 89.2 23.4 241 32-349 54-296 (410)
46 COG1413 FOG: HEAT repeat [Ener 98.5 3.8E-05 8.2E-10 82.8 25.6 248 32-349 43-304 (335)
47 KOG1943 Beta-tubulin folding c 98.5 0.00036 7.9E-09 83.0 34.0 352 26-390 335-748 (1133)
48 KOG1248 Uncharacterized conser 98.4 0.00059 1.3E-08 82.0 32.9 388 8-397 490-910 (1176)
49 KOG2259 Uncharacterized conser 98.3 0.00015 3.2E-09 82.3 25.3 271 73-366 198-493 (823)
50 KOG1967 DNA repair/transcripti 98.3 1.6E-05 3.6E-10 92.6 17.4 191 72-263 814-1021(1030)
51 KOG1060 Vesicle coat complex A 98.3 0.0002 4.3E-09 82.6 25.0 308 35-365 146-550 (968)
52 KOG1248 Uncharacterized conser 98.2 0.0018 3.8E-08 78.1 30.9 284 72-365 611-916 (1176)
53 KOG4224 Armadillo repeat prote 98.2 9.8E-05 2.1E-09 78.7 18.3 222 34-264 210-444 (550)
54 KOG1061 Vesicle coat complex A 98.2 0.0014 3.1E-08 75.9 29.0 401 33-492 87-500 (734)
55 KOG1240 Protein kinase contain 98.2 0.00048 1E-08 82.6 25.6 283 27-338 457-771 (1431)
56 KOG1060 Vesicle coat complex A 98.1 0.0031 6.6E-08 73.2 29.8 326 53-402 53-477 (968)
57 KOG1059 Vesicle coat complex A 98.1 0.013 2.8E-07 67.7 33.6 84 72-160 143-227 (877)
58 COG1413 FOG: HEAT repeat [Ener 98.0 0.0017 3.6E-08 70.1 24.8 245 31-345 73-331 (335)
59 KOG2274 Predicted importin 9 [ 98.0 0.017 3.6E-07 68.3 33.6 436 33-504 91-626 (1005)
60 KOG1062 Vesicle coat complex A 98.0 0.0017 3.7E-08 75.4 25.2 287 30-370 105-399 (866)
61 KOG1058 Vesicle coat complex C 98.0 0.0035 7.5E-08 72.4 27.1 321 27-388 129-466 (948)
62 COG5096 Vesicle coat complex, 98.0 0.016 3.4E-07 68.5 32.9 279 41-346 28-309 (757)
63 PF12460 MMS19_C: RNAPII trans 98.0 0.0046 1E-07 69.2 27.5 213 111-328 186-414 (415)
64 KOG2259 Uncharacterized conser 97.9 0.00072 1.6E-08 76.9 19.9 254 36-317 202-520 (823)
65 PF13513 HEAT_EZ: HEAT-like re 97.9 2.1E-05 4.5E-10 62.2 5.4 55 293-347 1-55 (55)
66 KOG1061 Vesicle coat complex A 97.9 0.0019 4E-08 75.0 22.7 365 34-426 15-384 (734)
67 KOG1240 Protein kinase contain 97.9 0.0019 4.1E-08 77.8 22.8 248 112-366 420-706 (1431)
68 cd00020 ARM Armadillo/beta-cat 97.8 6.1E-05 1.3E-09 67.5 8.2 111 32-142 7-119 (120)
69 KOG2025 Chromosome condensatio 97.8 0.016 3.4E-07 66.9 28.7 328 10-367 56-448 (892)
70 PF11865 DUF3385: Domain of un 97.8 9.3E-05 2E-09 72.0 9.3 112 274-388 5-157 (160)
71 TIGR02270 conserved hypothetic 97.8 0.0025 5.4E-08 71.1 21.6 208 33-307 87-295 (410)
72 PF12717 Cnd1: non-SMC mitotic 97.8 0.0014 2.9E-08 64.8 17.5 135 168-309 1-140 (178)
73 KOG1943 Beta-tubulin folding c 97.8 0.049 1.1E-06 65.5 32.7 319 16-348 196-610 (1133)
74 cd00020 ARM Armadillo/beta-cat 97.7 0.00038 8.2E-09 62.3 10.9 106 279-384 7-119 (120)
75 KOG1991 Nuclear transport rece 97.6 0.23 4.9E-06 59.6 35.1 230 13-247 328-599 (1010)
76 KOG1062 Vesicle coat complex A 97.6 0.0093 2E-07 69.6 22.6 244 28-310 138-416 (866)
77 COG5096 Vesicle coat complex, 97.6 0.075 1.6E-06 63.0 30.4 46 321-366 356-404 (757)
78 PF13513 HEAT_EZ: HEAT-like re 97.6 0.00013 2.9E-09 57.5 5.5 55 128-182 1-55 (55)
79 KOG1967 DNA repair/transcripti 97.6 0.00053 1.2E-08 80.4 12.2 171 5-178 833-1018(1030)
80 COG5064 SRP1 Karyopherin (impo 97.6 0.00068 1.5E-08 72.0 11.9 307 33-349 158-496 (526)
81 KOG1059 Vesicle coat complex A 97.5 0.2 4.3E-06 58.3 31.6 230 114-368 144-383 (877)
82 KOG1820 Microtubule-associated 97.5 0.0031 6.8E-08 75.2 18.2 192 73-270 253-447 (815)
83 KOG1820 Microtubule-associated 97.5 0.0027 5.8E-08 75.8 17.7 197 27-230 248-448 (815)
84 COG5240 SEC21 Vesicle coat com 97.5 0.052 1.1E-06 61.5 26.2 365 35-426 68-447 (898)
85 KOG2274 Predicted importin 9 [ 97.5 0.065 1.4E-06 63.5 27.9 278 27-348 485-779 (1005)
86 PF05804 KAP: Kinesin-associat 97.5 0.051 1.1E-06 64.4 27.3 321 37-370 255-634 (708)
87 PF13646 HEAT_2: HEAT repeats; 97.5 0.0005 1.1E-08 58.9 8.1 85 34-139 1-88 (88)
88 PF13646 HEAT_2: HEAT repeats; 97.5 0.0011 2.4E-08 56.7 10.2 86 116-221 1-88 (88)
89 COG5240 SEC21 Vesicle coat com 97.3 0.035 7.5E-07 62.8 22.1 289 71-384 262-554 (898)
90 PF12717 Cnd1: non-SMC mitotic 97.3 0.013 2.7E-07 57.9 16.9 111 250-368 1-113 (178)
91 KOG2956 CLIP-associating prote 97.3 0.0097 2.1E-07 65.8 16.5 151 27-187 324-480 (516)
92 COG5064 SRP1 Karyopherin (impo 97.2 0.0025 5.5E-08 67.8 11.6 228 115-350 158-399 (526)
93 PF05918 API5: Apoptosis inhib 97.2 0.13 2.8E-06 59.2 26.0 290 74-389 24-349 (556)
94 PLN03076 ARF guanine nucleotid 97.2 0.2 4.4E-06 64.9 30.0 315 49-368 1109-1514(1780)
95 PF02985 HEAT: HEAT repeat; I 97.2 0.0004 8.7E-09 48.6 3.6 30 33-62 1-30 (31)
96 KOG1020 Sister chromatid cohes 97.1 0.42 9.1E-06 59.7 29.6 39 290-328 1048-1087(1692)
97 KOG1992 Nuclear export recepto 97.1 0.32 7E-06 57.4 27.5 362 33-402 89-600 (960)
98 KOG2032 Uncharacterized conser 97.1 0.62 1.3E-05 52.4 28.5 215 75-298 183-406 (533)
99 KOG1020 Sister chromatid cohes 97.1 0.49 1.1E-05 59.2 29.8 152 211-370 791-945 (1692)
100 PF08623 TIP120: TATA-binding 97.0 0.0069 1.5E-07 59.4 10.7 127 231-361 3-166 (169)
101 KOG1058 Vesicle coat complex C 96.9 0.21 4.6E-06 58.3 23.3 257 74-365 100-361 (948)
102 KOG1525 Sister chromatid cohes 96.9 0.34 7.4E-06 60.7 26.7 343 27-389 47-454 (1266)
103 KOG2021 Nuclear mRNA export fa 96.8 0.7 1.5E-05 54.2 26.3 346 38-400 92-585 (980)
104 COG5218 YCG1 Chromosome conden 96.8 0.76 1.6E-05 52.6 25.9 184 10-213 61-254 (885)
105 PF04118 Dopey_N: Dopey, N-ter 96.7 0.23 5E-06 53.4 21.2 186 114-348 54-253 (307)
106 PF08167 RIX1: rRNA processing 96.7 0.042 9E-07 53.8 14.3 134 111-246 22-164 (165)
107 KOG2032 Uncharacterized conser 96.7 0.21 4.5E-06 56.0 20.9 266 28-309 254-532 (533)
108 PF05918 API5: Apoptosis inhib 96.7 0.5 1.1E-05 54.6 24.7 149 167-332 34-190 (556)
109 PF10521 DUF2454: Protein of u 96.7 0.029 6.2E-07 59.6 13.9 145 24-168 111-278 (282)
110 PF05004 IFRD: Interferon-rela 96.6 0.25 5.5E-06 53.2 20.7 208 80-288 50-282 (309)
111 PF04826 Arm_2: Armadillo-like 96.6 0.052 1.1E-06 56.9 14.6 176 33-216 55-253 (254)
112 KOG1078 Vesicle coat complex C 96.6 0.31 6.8E-06 57.2 21.8 255 112-384 243-531 (865)
113 PF05004 IFRD: Interferon-rela 96.5 0.27 6E-06 53.0 20.2 187 157-348 45-256 (309)
114 PF05804 KAP: Kinesin-associat 96.5 1 2.2E-05 53.7 26.2 131 31-172 289-429 (708)
115 KOG1993 Nuclear transport rece 96.5 0.93 2E-05 53.5 24.9 271 72-354 525-818 (978)
116 PF08167 RIX1: rRNA processing 96.5 0.14 3E-06 50.1 16.1 139 27-202 20-161 (165)
117 KOG1992 Nuclear export recepto 96.5 0.35 7.6E-06 57.1 21.6 274 49-326 379-686 (960)
118 KOG2025 Chromosome condensatio 96.4 1.6 3.5E-05 51.1 26.2 206 129-348 61-293 (892)
119 KOG2956 CLIP-associating prote 96.4 0.32 6.9E-06 54.3 19.4 188 151-348 283-476 (516)
120 KOG4653 Uncharacterized conser 96.3 0.2 4.4E-06 59.2 18.6 219 122-348 735-963 (982)
121 KOG0168 Putative ubiquitin fus 96.3 0.57 1.2E-05 55.6 21.9 189 198-389 169-369 (1051)
122 PF13251 DUF4042: Domain of un 96.3 0.051 1.1E-06 54.1 11.8 138 47-184 1-174 (182)
123 PF02985 HEAT: HEAT repeat; I 96.3 0.007 1.5E-07 42.3 4.1 29 156-184 1-29 (31)
124 PF08506 Cse1: Cse1; InterPro 96.2 0.12 2.5E-06 57.2 15.2 210 128-342 110-368 (370)
125 PF04826 Arm_2: Armadillo-like 96.1 0.1 2.2E-06 54.7 13.7 185 199-389 15-209 (254)
126 KOG4653 Uncharacterized conser 96.1 0.36 7.8E-06 57.3 19.1 227 34-268 729-966 (982)
127 PLN03076 ARF guanine nucleotid 96.1 0.97 2.1E-05 58.9 24.6 239 29-267 1179-1490(1780)
128 KOG1993 Nuclear transport rece 96.0 4.8 0.0001 47.9 28.6 307 165-488 497-833 (978)
129 PF14500 MMS19_N: Dos2-interac 96.0 0.64 1.4E-05 49.0 19.0 204 37-243 4-256 (262)
130 COG5218 YCG1 Chromosome conden 95.8 0.45 9.8E-06 54.3 17.8 211 30-261 47-261 (885)
131 KOG0392 SNF2 family DNA-depend 95.8 0.13 2.8E-06 62.9 14.2 175 49-269 750-928 (1549)
132 PF10274 ParcG: Parkin co-regu 95.7 0.15 3.4E-06 50.6 12.3 96 273-369 32-136 (183)
133 KOG0414 Chromosome condensatio 95.6 0.33 7.1E-06 59.3 16.7 160 194-370 917-1106(1251)
134 PF14500 MMS19_N: Dos2-interac 95.6 1.3 2.7E-05 46.8 19.6 206 118-326 3-256 (262)
135 KOG0889 Histone acetyltransfer 95.6 1.3 2.7E-05 59.9 22.5 295 33-372 985-1334(3550)
136 PF14664 RICTOR_N: Rapamycin-i 95.5 5.1 0.00011 44.4 26.0 232 109-348 20-268 (371)
137 KOG0392 SNF2 family DNA-depend 95.5 0.13 2.7E-06 63.0 12.7 290 9-348 624-924 (1549)
138 PF03378 CAS_CSE1: CAS/CSE pro 95.5 4.3 9.4E-05 45.9 24.3 222 144-370 15-256 (435)
139 KOG0413 Uncharacterized conser 95.4 2.3 5E-05 51.3 21.9 66 280-349 969-1035(1529)
140 PF12231 Rif1_N: Rap1-interact 95.3 6.2 0.00013 43.7 26.5 214 128-348 60-302 (372)
141 PF12719 Cnd3: Nuclear condens 95.2 0.72 1.6E-05 49.3 16.5 144 217-365 4-161 (298)
142 PF11865 DUF3385: Domain of un 95.1 0.16 3.4E-06 49.5 10.1 115 152-267 7-158 (160)
143 KOG4524 Uncharacterized conser 95.1 9.6 0.00021 46.4 26.0 71 279-349 803-876 (1014)
144 KOG1991 Nuclear transport rece 94.9 12 0.00027 45.5 31.5 288 14-306 484-798 (1010)
145 KOG0168 Putative ubiquitin fus 94.9 3.1 6.8E-05 49.7 21.2 203 274-526 206-423 (1051)
146 PF13251 DUF4042: Domain of un 94.8 0.2 4.3E-06 49.9 10.0 139 129-267 1-175 (182)
147 PF10521 DUF2454: Protein of u 94.8 0.97 2.1E-05 48.0 15.7 171 127-333 92-278 (282)
148 KOG2062 26S proteasome regulat 94.7 0.34 7.3E-06 56.6 12.6 125 115-253 555-681 (929)
149 KOG4413 26S proteasome regulat 94.7 7.8 0.00017 41.9 24.6 313 31-348 81-438 (524)
150 KOG1293 Proteins containing ar 94.7 1.4 3E-05 51.1 17.3 156 27-184 371-533 (678)
151 KOG4413 26S proteasome regulat 94.5 3.2 7E-05 44.7 18.4 182 160-348 48-242 (524)
152 KOG4535 HEAT and armadillo rep 94.4 4.9 0.00011 45.3 20.2 306 42-348 6-461 (728)
153 KOG0567 HEAT repeat-containing 94.3 1.7 3.7E-05 45.5 15.6 171 32-222 67-277 (289)
154 COG5116 RPN2 26S proteasome re 94.3 0.74 1.6E-05 52.5 13.8 160 72-252 514-677 (926)
155 KOG2160 Armadillo/beta-catenin 94.3 2.1 4.5E-05 46.6 16.8 175 206-390 93-284 (342)
156 KOG2933 Uncharacterized conser 94.1 0.88 1.9E-05 48.6 13.2 125 277-401 86-215 (334)
157 KOG1525 Sister chromatid cohes 94.0 24 0.00052 45.0 36.3 199 112-317 257-481 (1266)
158 KOG1077 Vesicle coat complex A 93.9 18 0.00038 42.9 29.0 217 125-368 159-416 (938)
159 KOG2149 Uncharacterized conser 93.7 0.7 1.5E-05 50.8 12.1 129 35-163 61-190 (393)
160 PF10274 ParcG: Parkin co-regu 93.7 0.28 6.1E-06 48.8 8.3 122 109-230 33-169 (183)
161 PF08569 Mo25: Mo25-like; Int 93.6 13 0.00029 40.6 25.9 228 115-386 77-333 (335)
162 KOG2062 26S proteasome regulat 93.6 1.4 3.1E-05 51.7 14.7 175 35-230 522-700 (929)
163 PF04118 Dopey_N: Dopey, N-ter 93.6 7.4 0.00016 42.0 19.4 178 73-258 54-246 (307)
164 PF08389 Xpo1: Exportin 1-like 93.4 0.55 1.2E-05 43.8 9.6 127 47-179 3-148 (148)
165 PF01347 Vitellogenin_N: Lipop 93.4 5.7 0.00012 46.7 20.1 161 155-342 431-615 (618)
166 KOG0946 ER-Golgi vesicle-tethe 93.3 22 0.00048 42.6 23.6 334 26-368 20-419 (970)
167 COG5656 SXM1 Importin, protein 93.1 24 0.00052 42.1 39.0 350 12-374 325-744 (970)
168 KOG0803 Predicted E3 ubiquitin 93.1 6.5 0.00014 49.9 20.3 219 116-334 43-289 (1312)
169 PF08623 TIP120: TATA-binding 93.0 0.41 9E-06 47.0 8.1 95 150-247 4-116 (169)
170 KOG0567 HEAT repeat-containing 92.8 2.7 5.9E-05 44.0 14.0 165 157-349 69-249 (289)
171 KOG2021 Nuclear mRNA export fa 92.7 27 0.00059 41.7 33.3 151 192-348 185-363 (980)
172 PF08767 CRM1_C: CRM1 C termin 92.5 18 0.00038 39.3 20.7 157 112-269 65-247 (319)
173 PF03224 V-ATPase_H_N: V-ATPas 92.5 0.86 1.9E-05 49.0 10.6 151 197-350 106-270 (312)
174 KOG0414 Chromosome condensatio 92.3 38 0.00082 42.3 33.0 106 82-188 321-432 (1251)
175 KOG1949 Uncharacterized conser 92.0 5.6 0.00012 46.8 16.3 180 199-384 177-369 (1005)
176 smart00638 LPD_N Lipoprotein N 91.9 21 0.00046 41.6 22.0 121 209-347 410-543 (574)
177 COG5098 Chromosome condensatio 91.9 2.1 4.6E-05 50.0 12.9 192 195-400 891-1088(1128)
178 KOG2149 Uncharacterized conser 91.9 1.8 3.9E-05 47.7 12.0 128 198-325 60-187 (393)
179 PF12719 Cnd3: Nuclear condens 91.8 20 0.00044 38.2 24.1 130 152-291 23-164 (298)
180 PF08767 CRM1_C: CRM1 C termin 91.8 15 0.00032 39.8 19.1 141 130-270 43-198 (319)
181 PF08569 Mo25: Mo25-like; Int 91.6 23 0.00051 38.7 20.3 194 28-228 72-286 (335)
182 PF12830 Nipped-B_C: Sister ch 91.5 11 0.00023 37.6 16.3 62 34-99 10-72 (187)
183 KOG2933 Uncharacterized conser 91.4 3.7 7.9E-05 44.0 13.2 143 112-260 127-271 (334)
184 KOG2160 Armadillo/beta-catenin 91.2 19 0.0004 39.4 18.6 177 3-188 55-244 (342)
185 KOG2085 Serine/threonine prote 91.0 25 0.00054 39.2 19.4 272 70-385 148-450 (457)
186 PF12530 DUF3730: Protein of u 91.0 21 0.00046 36.8 21.8 202 116-334 2-217 (234)
187 KOG1243 Protein kinase [Genera 90.8 1.3 2.9E-05 51.7 10.1 191 70-270 327-519 (690)
188 cd08050 TAF6 TATA Binding Prot 90.7 3.4 7.4E-05 45.3 12.9 147 147-307 174-339 (343)
189 PF01603 B56: Protein phosphat 90.6 8.7 0.00019 43.1 16.4 220 113-363 132-385 (409)
190 KOG2081 Nuclear transport regu 90.6 38 0.00083 39.1 31.3 300 71-387 151-497 (559)
191 PF05536 Neurochondrin: Neuroc 90.5 41 0.00089 39.3 32.2 180 128-313 71-266 (543)
192 KOG1293 Proteins containing ar 90.4 43 0.00093 39.4 28.3 347 73-423 95-535 (678)
193 PF13001 Ecm29: Proteasome sta 90.4 2.5 5.5E-05 48.7 12.1 98 125-223 385-486 (501)
194 KOG0413 Uncharacterized conser 90.4 14 0.00031 45.0 17.9 89 111-204 1003-1091(1529)
195 PF10363 DUF2435: Protein of u 90.4 2.6 5.5E-05 37.3 9.5 87 280-369 4-90 (92)
196 PF10363 DUF2435: Protein of u 90.2 1.2 2.6E-05 39.4 7.3 84 157-248 5-88 (92)
197 KOG1078 Vesicle coat complex C 90.1 50 0.0011 39.7 30.5 183 234-428 242-428 (865)
198 PF03224 V-ATPase_H_N: V-ATPas 90.0 11 0.00023 40.6 15.8 186 200-389 62-273 (312)
199 KOG1517 Guanine nucleotide bin 89.8 5.8 0.00013 48.5 14.3 109 116-224 601-731 (1387)
200 PF01347 Vitellogenin_N: Lipop 89.7 20 0.00044 42.0 19.3 162 236-410 430-611 (618)
201 cd00256 VATPase_H VATPase_H, r 89.6 41 0.0009 38.1 23.7 272 74-348 102-424 (429)
202 PF03378 CAS_CSE1: CAS/CSE pro 89.3 24 0.00053 40.0 18.6 196 133-332 45-254 (435)
203 KOG1949 Uncharacterized conser 89.2 20 0.00042 42.5 17.5 152 27-180 168-327 (1005)
204 COG5116 RPN2 26S proteasome re 89.0 1.4 3E-05 50.4 8.2 58 113-170 620-677 (926)
205 cd08050 TAF6 TATA Binding Prot 88.6 7.4 0.00016 42.6 13.6 143 66-222 175-337 (343)
206 KOG0889 Histone acetyltransfer 88.4 1.3E+02 0.0028 42.2 30.0 278 28-314 1029-1352(3550)
207 PF01603 B56: Protein phosphat 87.8 52 0.0011 36.9 23.4 242 27-316 127-378 (409)
208 PF14664 RICTOR_N: Rapamycin-i 87.6 51 0.0011 36.6 19.8 154 152-310 22-178 (371)
209 PF05536 Neurochondrin: Neuroc 87.6 64 0.0014 37.7 28.7 159 110-269 94-264 (543)
210 KOG1243 Protein kinase [Genera 87.3 8.1 0.00017 45.5 13.2 137 203-349 261-398 (690)
211 KOG1851 Uncharacterized conser 86.9 27 0.00058 44.8 17.9 154 112-269 1524-1681(1710)
212 KOG1877 Putative transmembrane 86.9 11 0.00023 45.6 14.1 234 133-367 75-350 (819)
213 COG5032 TEL1 Phosphatidylinosi 86.7 78 0.0017 43.1 23.4 252 7-266 247-510 (2105)
214 KOG2153 Protein involved in th 86.6 53 0.0012 38.6 18.9 144 75-244 212-389 (704)
215 PF08064 UME: UME (NUC010) dom 86.5 7.2 0.00016 35.4 10.0 67 280-348 12-82 (107)
216 COG5095 TAF6 Transcription ini 86.4 14 0.0003 39.6 13.1 152 149-313 195-364 (450)
217 KOG1077 Vesicle coat complex A 86.3 81 0.0018 37.7 39.5 409 24-465 103-542 (938)
218 PF00514 Arm: Armadillo/beta-c 86.3 1.2 2.6E-05 32.7 4.0 29 320-348 12-40 (41)
219 cd03568 VHS_STAM VHS domain fa 86.2 11 0.00023 36.2 11.5 76 114-189 37-115 (144)
220 PF08064 UME: UME (NUC010) dom 86.0 3.3 7.2E-05 37.5 7.6 78 167-246 27-105 (107)
221 PF13001 Ecm29: Proteasome sta 85.9 74 0.0016 36.7 28.1 169 164-348 246-442 (501)
222 KOG1851 Uncharacterized conser 85.7 1E+02 0.0022 39.9 21.9 114 231-348 1476-1597(1710)
223 KOG2549 Transcription initiati 85.6 42 0.00091 38.8 17.3 168 66-246 204-392 (576)
224 cd03561 VHS VHS domain family; 85.2 17 0.00037 34.1 12.2 76 113-188 36-116 (133)
225 PF08506 Cse1: Cse1; InterPro 85.1 10 0.00022 42.0 12.3 130 46-179 225-370 (370)
226 KOG2973 Uncharacterized conser 85.0 62 0.0013 35.0 18.8 51 119-169 8-58 (353)
227 PF14663 RasGEF_N_2: Rapamycin 84.1 11 0.00023 34.7 10.0 95 320-420 8-109 (115)
228 KOG1517 Guanine nucleotide bin 83.7 43 0.00093 41.5 17.0 252 115-374 473-755 (1387)
229 KOG2973 Uncharacterized conser 83.6 70 0.0015 34.6 18.6 131 35-170 6-144 (353)
230 COG5098 Chromosome condensatio 82.8 45 0.00099 39.6 16.2 105 79-184 305-415 (1128)
231 PF00514 Arm: Armadillo/beta-c 82.6 1.9 4.1E-05 31.7 3.7 29 32-60 12-40 (41)
232 PF12830 Nipped-B_C: Sister ch 82.2 44 0.00096 33.2 14.5 129 236-369 7-143 (187)
233 PF11864 DUF3384: Domain of un 82.1 99 0.0022 35.3 24.6 282 45-346 3-327 (464)
234 PF11707 Npa1: Ribosome 60S bi 81.7 84 0.0018 34.1 20.9 215 135-386 7-238 (330)
235 smart00638 LPD_N Lipoprotein N 81.2 1.2E+02 0.0025 35.5 23.5 178 99-304 345-541 (574)
236 COG5656 SXM1 Importin, protein 81.0 1.4E+02 0.003 36.1 31.5 331 22-364 449-827 (970)
237 smart00802 UME Domain in UVSB 80.9 6.6 0.00014 35.8 7.2 83 162-246 18-105 (107)
238 KOG2122 Beta-catenin-binding p 80.8 1.9E+02 0.0041 37.7 21.6 70 320-389 530-605 (2195)
239 cd03572 ENTH_epsin_related ENT 80.4 4.6 9.9E-05 37.7 6.2 72 193-264 35-117 (122)
240 PF12530 DUF3730: Protein of u 80.4 75 0.0016 32.8 19.0 169 199-386 3-183 (234)
241 COG5095 TAF6 Transcription ini 80.2 45 0.00098 35.9 13.9 145 65-221 193-355 (450)
242 PF12074 DUF3554: Domain of un 80.1 33 0.00072 37.2 13.9 154 30-184 59-235 (339)
243 smart00288 VHS Domain present 80.0 24 0.00052 33.2 11.1 75 115-189 38-116 (133)
244 KOG2549 Transcription initiati 80.0 21 0.00047 41.0 12.3 155 149-348 205-369 (576)
245 KOG3961 Uncharacterized conser 79.1 5.4 0.00012 40.6 6.6 92 147-242 110-204 (262)
246 KOG1848 Uncharacterized conser 78.8 24 0.00052 44.7 13.0 120 71-190 995-1138(1610)
247 KOG2137 Protein kinase [Signal 78.3 40 0.00086 40.1 14.1 111 27-143 384-496 (700)
248 smart00185 ARM Armadillo/beta- 78.2 2.5 5.3E-05 30.3 3.0 28 33-60 13-40 (41)
249 KOG2011 Sister chromatid cohes 78.0 2E+02 0.0043 36.2 23.7 293 118-420 82-434 (1048)
250 KOG2137 Protein kinase [Signal 77.6 1.4E+02 0.003 35.8 18.2 202 134-348 272-495 (700)
251 PF04078 Rcd1: Cell differenti 77.5 81 0.0018 33.3 14.9 134 126-262 7-164 (262)
252 KOG0803 Predicted E3 ubiquitin 77.5 1E+02 0.0023 39.6 18.4 257 138-402 25-331 (1312)
253 KOG1822 Uncharacterized conser 77.5 2.6E+02 0.0056 37.3 22.9 246 35-309 879-1128(2067)
254 COG5221 DOP1 Dopey and related 77.4 55 0.0012 40.6 15.0 130 216-352 125-260 (1618)
255 smart00802 UME Domain in UVSB 77.2 7.4 0.00016 35.5 6.4 60 209-270 28-87 (107)
256 KOG3961 Uncharacterized conser 76.7 6.9 0.00015 39.9 6.5 77 192-268 110-186 (262)
257 PF09324 DUF1981: Domain of un 76.6 12 0.00027 32.5 7.4 65 29-93 14-79 (86)
258 PF08161 NUC173: NUC173 domain 76.2 73 0.0016 32.2 13.9 40 66-105 34-74 (198)
259 PF08713 DNA_alkylation: DNA a 75.6 48 0.0011 32.9 12.6 91 113-216 119-209 (213)
260 cd03567 VHS_GGA VHS domain fam 75.4 27 0.00059 33.3 10.0 74 116-189 40-121 (139)
261 KOG2022 Nuclear transport rece 74.9 2.1E+02 0.0046 35.1 27.2 365 49-432 441-858 (982)
262 PF12054 DUF3535: Domain of un 74.9 1.6E+02 0.0034 33.6 19.3 234 128-387 101-363 (441)
263 KOG1789 Endocytosis protein RM 74.8 2.4E+02 0.0052 35.6 26.4 124 50-184 1743-1883(2235)
264 KOG3036 Protein involved in ce 74.3 1.2E+02 0.0026 31.9 16.0 135 125-262 35-193 (293)
265 PF11864 DUF3384: Domain of un 73.3 1.7E+02 0.0038 33.3 24.3 126 69-203 213-351 (464)
266 PF00790 VHS: VHS domain; Int 73.0 49 0.0011 31.3 11.2 76 113-188 41-122 (140)
267 smart00145 PI3Ka Phosphoinosit 73.0 10 0.00022 37.9 6.7 76 72-160 43-119 (184)
268 PF07571 DUF1546: Protein of u 72.3 19 0.00042 31.7 7.6 63 42-104 16-81 (92)
269 cd03569 VHS_Hrs_Vps27p VHS dom 72.0 58 0.0012 31.1 11.4 76 114-189 41-119 (142)
270 PF12765 Cohesin_HEAT: HEAT re 71.7 6.3 0.00014 29.6 3.8 40 303-344 3-42 (42)
271 KOG1822 Uncharacterized conser 71.6 3.5E+02 0.0077 36.1 21.0 192 137-330 808-1010(2067)
272 PF08713 DNA_alkylation: DNA a 71.1 21 0.00045 35.6 8.7 133 195-349 50-184 (213)
273 cd00256 VATPase_H VATPase_H, r 70.2 2E+02 0.0043 32.7 19.7 179 209-387 67-260 (429)
274 PF12231 Rif1_N: Rap1-interact 69.5 1.9E+02 0.004 32.1 26.8 91 295-389 150-243 (372)
275 PF14750 INTS2: Integrator com 69.3 3.2E+02 0.0069 34.7 23.1 48 342-389 179-229 (1049)
276 PF12397 U3snoRNP10: U3 small 68.8 73 0.0016 29.1 11.1 70 277-351 4-76 (121)
277 PF12726 SEN1_N: SEN1 N termin 68.7 2.7E+02 0.0059 33.7 34.3 161 72-237 80-259 (727)
278 smart00185 ARM Armadillo/beta- 68.1 8.2 0.00018 27.5 3.7 29 320-348 12-40 (41)
279 PF08389 Xpo1: Exportin 1-like 67.7 27 0.00058 32.3 8.1 124 129-260 3-147 (148)
280 PF14631 FancD2: Fanconi anaem 67.4 4E+02 0.0086 35.1 22.9 143 149-297 429-572 (1426)
281 PF12612 TFCD_C: Tubulin foldi 66.8 24 0.00053 35.2 8.1 36 151-186 83-118 (193)
282 cd03565 VHS_Tom1 VHS domain fa 66.5 79 0.0017 30.1 11.1 75 115-189 39-120 (141)
283 PF04388 Hamartin: Hamartin pr 66.1 38 0.00083 40.6 10.7 86 278-365 69-161 (668)
284 cd03568 VHS_STAM VHS domain fa 65.9 51 0.0011 31.6 9.6 72 277-348 35-109 (144)
285 KOG1837 Uncharacterized conser 65.7 61 0.0013 41.8 12.5 71 112-182 1539-1609(1621)
286 KOG3036 Protein involved in ce 65.5 1.9E+02 0.004 30.6 13.9 107 291-401 137-260 (293)
287 PF12765 Cohesin_HEAT: HEAT re 64.8 11 0.00024 28.2 3.9 29 150-178 13-41 (42)
288 PF11935 DUF3453: Domain of un 64.6 1.8E+02 0.0039 30.1 14.3 147 163-328 1-161 (239)
289 KOG1048 Neural adherens juncti 64.2 3.3E+02 0.0071 33.0 19.5 108 34-144 235-350 (717)
290 KOG2759 Vacuolar H+-ATPase V1 63.4 2.6E+02 0.0057 31.6 18.3 270 75-347 116-436 (442)
291 PF14745 WASH-7_N: WASH comple 63.3 47 0.001 39.0 10.6 68 419-515 167-239 (567)
292 PF12074 DUF3554: Domain of un 63.1 2.3E+02 0.0049 30.7 20.2 108 130-247 3-113 (339)
293 cd07064 AlkD_like_1 A new stru 62.8 1.8E+02 0.0039 29.5 17.1 180 150-358 7-189 (208)
294 PF14961 BROMI: Broad-minded p 62.2 4.4E+02 0.0095 33.8 19.4 69 278-349 160-231 (1296)
295 cd07064 AlkD_like_1 A new stru 62.1 1.3E+02 0.0028 30.5 12.4 81 150-236 110-190 (208)
296 cd00864 PI3Ka Phosphoinositide 61.9 30 0.00066 33.4 7.4 46 110-160 69-114 (152)
297 cd00872 PI3Ka_I Phosphoinositi 61.9 25 0.00055 34.7 6.9 46 111-161 70-115 (171)
298 cd03567 VHS_GGA VHS domain fam 60.7 1.1E+02 0.0024 29.1 10.8 71 278-348 37-115 (139)
299 cd03561 VHS VHS domain family; 60.7 57 0.0012 30.5 8.8 72 277-348 35-111 (133)
300 PF11698 V-ATPase_H_C: V-ATPas 60.4 16 0.00034 34.0 4.8 83 137-224 30-114 (119)
301 KOG1837 Uncharacterized conser 59.2 41 0.00089 43.2 9.4 77 30-106 1539-1615(1621)
302 PF09324 DUF1981: Domain of un 59.2 55 0.0012 28.4 7.8 69 279-347 17-86 (86)
303 cd00197 VHS_ENTH_ANTH VHS, ENT 59.0 69 0.0015 28.9 8.9 72 276-347 34-113 (115)
304 PF12783 Sec7_N: Guanine nucle 58.6 1.8E+02 0.0038 28.1 12.3 115 209-355 35-152 (168)
305 KOG4500 Rho/Rac GTPase guanine 57.5 3.4E+02 0.0073 31.0 18.1 232 113-349 314-564 (604)
306 cd00870 PI3Ka_III Phosphoinosi 56.5 29 0.00064 34.1 6.3 46 111-161 77-122 (166)
307 PF11698 V-ATPase_H_C: V-ATPas 56.5 32 0.0007 32.0 6.2 70 195-265 42-114 (119)
308 KOG1566 Conserved protein Mo25 56.5 3E+02 0.0065 30.0 15.7 222 157-386 81-336 (342)
309 KOG3687 Tuberin - Rap/ran-GTPa 55.8 5.1E+02 0.011 32.5 26.8 229 165-402 483-781 (1697)
310 KOG0891 DNA-dependent protein 55.4 7.5E+02 0.016 34.3 34.9 196 34-230 7-209 (2341)
311 cd03569 VHS_Hrs_Vps27p VHS dom 54.5 1.1E+02 0.0025 29.0 9.9 72 277-348 39-113 (142)
312 PF14911 MMS22L_C: S-phase gen 54.4 3.5E+02 0.0076 30.2 20.2 54 216-269 231-290 (373)
313 KOG4535 HEAT and armadillo rep 53.3 4.1E+02 0.009 30.7 22.2 320 36-367 257-657 (728)
314 KOG1823 DRIM (Down-regulated i 52.3 1.8E+02 0.004 37.4 13.4 297 24-335 964-1291(1364)
315 smart00145 PI3Ka Phosphoinosit 51.7 36 0.00077 34.0 6.1 77 153-242 42-119 (184)
316 PF11919 DUF3437: Domain of un 51.7 29 0.00063 30.6 4.9 54 130-184 5-58 (90)
317 PF00790 VHS: VHS domain; Int 51.5 1.2E+02 0.0025 28.7 9.4 72 277-348 40-117 (140)
318 cd00872 PI3Ka_I Phosphoinositi 51.1 38 0.00081 33.5 6.1 78 154-243 38-115 (171)
319 cd00871 PI4Ka Phosphoinositide 51.0 17 0.00038 36.0 3.7 35 124-161 81-115 (175)
320 KOG2005 26S proteasome regulat 50.9 4.1E+02 0.0088 31.9 14.9 86 74-170 416-502 (878)
321 PF14225 MOR2-PAG1_C: Cell mor 50.8 3.3E+02 0.0071 28.8 22.0 177 112-303 62-252 (262)
322 COG5234 CIN1 Beta-tubulin fold 50.6 1.5E+02 0.0032 35.6 11.4 181 125-309 207-417 (993)
323 PF04499 SAPS: SIT4 phosphatas 50.3 1.6E+02 0.0035 33.8 11.9 110 191-313 29-153 (475)
324 PF12333 Ipi1_N: Rix1 complex 50.1 39 0.00084 30.3 5.6 58 192-249 7-65 (102)
325 PF00613 PI3Ka: Phosphoinositi 50.1 13 0.00029 37.0 2.8 78 71-161 43-121 (184)
326 PF06371 Drf_GBD: Diaphanous G 49.7 12 0.00026 36.6 2.4 92 213-307 93-186 (187)
327 KOG2199 Signal transducing ada 49.2 2.3E+02 0.005 31.7 12.0 79 115-193 46-127 (462)
328 PF14631 FancD2: Fanconi anaem 49.0 7.7E+02 0.017 32.6 31.1 116 228-348 426-541 (1426)
329 smart00567 EZ_HEAT E-Z type HE 48.5 20 0.00044 24.3 2.7 28 47-84 2-29 (30)
330 PF02847 MA3: MA3 domain; Int 48.0 67 0.0015 28.6 6.9 75 27-101 31-108 (113)
331 smart00288 VHS Domain present 47.8 1.5E+02 0.0032 27.8 9.4 72 277-348 35-110 (133)
332 PF12333 Ipi1_N: Rix1 complex 47.7 45 0.00097 29.9 5.6 56 112-167 9-65 (102)
333 cd00864 PI3Ka Phosphoinositide 47.5 55 0.0012 31.6 6.5 76 155-242 39-114 (152)
334 KOG4199 Uncharacterized conser 47.3 4.4E+02 0.0095 29.2 20.0 237 240-501 59-338 (461)
335 KOG3723 PH domain protein Melt 46.5 5.6E+02 0.012 30.2 16.6 66 299-368 182-248 (851)
336 PF04510 DUF577: Family of unk 46.5 3.1E+02 0.0067 27.3 12.1 48 297-346 60-108 (174)
337 PF12783 Sec7_N: Guanine nucle 46.2 2.1E+02 0.0046 27.5 10.6 70 157-226 75-147 (168)
338 cd00869 PI3Ka_II Phosphoinosit 45.7 24 0.00052 34.9 3.7 44 113-161 72-115 (169)
339 PF08161 NUC173: NUC173 domain 45.1 3.4E+02 0.0074 27.4 12.2 148 214-370 18-185 (198)
340 KOG0946 ER-Golgi vesicle-tethe 43.6 7.1E+02 0.015 30.6 31.7 308 37-345 171-553 (970)
341 COG5537 IRR1 Cohesin [Cell div 43.2 6.4E+02 0.014 30.0 16.4 132 115-256 276-412 (740)
342 cd03572 ENTH_epsin_related ENT 42.9 1.1E+02 0.0024 28.6 7.4 72 277-349 36-119 (122)
343 KOG3687 Tuberin - Rap/ran-GTPa 41.9 7.5E+02 0.016 31.2 15.5 179 27-205 463-700 (1697)
344 PF11919 DUF3437: Domain of un 41.6 58 0.0013 28.8 5.2 57 212-269 5-61 (90)
345 PF13198 DUF4014: Protein of u 41.0 36 0.00079 28.6 3.5 54 516-581 14-67 (72)
346 cd00870 PI3Ka_III Phosphoinosi 40.8 59 0.0013 31.9 5.7 49 191-244 75-123 (166)
347 PF03130 HEAT_PBS: PBS lyase H 40.7 18 0.00038 24.3 1.4 26 48-83 1-26 (27)
348 cd00197 VHS_ENTH_ANTH VHS, ENT 40.2 1.9E+02 0.0041 26.0 8.6 69 112-180 35-111 (115)
349 KOG3613 Dopey and related pred 40.2 8.9E+02 0.019 32.3 16.7 62 125-186 1498-1561(1749)
350 KOG0890 Protein kinase of the 40.1 1.2E+03 0.026 32.3 24.8 205 144-348 863-1112(2382)
351 PF00613 PI3Ka: Phosphoinositi 40.1 26 0.00057 34.9 3.2 81 151-243 41-121 (184)
352 PRK12323 DNA polymerase III su 40.0 2.3E+02 0.0049 34.1 11.1 43 278-320 186-228 (700)
353 PF14225 MOR2-PAG1_C: Cell mor 38.3 5.1E+02 0.011 27.4 19.8 143 192-348 60-216 (262)
354 PF07834 RanGAP1_C: RanGAP1 C- 36.8 2.4E+02 0.0052 28.3 9.1 125 23-169 28-165 (183)
355 PF11264 ThylakoidFormat: Thyl 36.8 2.8E+02 0.006 28.6 9.9 104 69-172 66-180 (216)
356 KOG1848 Uncharacterized conser 36.1 1.1E+03 0.025 30.8 20.1 113 156-268 998-1134(1610)
357 cd06561 AlkD_like A new struct 35.5 4.3E+02 0.0092 25.7 15.0 73 158-235 108-180 (197)
358 COG5234 CIN1 Beta-tubulin fold 35.0 9.1E+02 0.02 29.4 20.0 154 25-183 239-415 (993)
359 COG5231 VMA13 Vacuolar H+-ATPa 35.0 97 0.0021 33.8 6.4 128 49-185 291-429 (432)
360 PF11707 Npa1: Ribosome 60S bi 34.9 6.2E+02 0.013 27.4 20.9 212 98-323 48-314 (330)
361 KOG0929 Guanine nucleotide exc 34.7 1.2E+03 0.027 30.8 19.5 243 35-288 1040-1320(1514)
362 PF04078 Rcd1: Cell differenti 33.8 6E+02 0.013 27.0 12.7 56 293-348 110-167 (262)
363 KOG0905 Phosphoinositide 3-kin 33.5 2.3E+02 0.0049 36.1 9.8 45 207-254 901-945 (1639)
364 PF14911 MMS22L_C: S-phase gen 32.2 7.6E+02 0.016 27.6 15.7 143 149-311 141-290 (373)
365 PF11701 UNC45-central: Myosin 32.0 66 0.0014 31.1 4.4 104 241-349 7-117 (157)
366 KOG2011 Sister chromatid cohes 32.0 1.2E+03 0.025 29.8 18.5 133 120-259 293-428 (1048)
367 cd03565 VHS_Tom1 VHS domain fa 30.4 3.6E+02 0.0077 25.6 9.0 72 277-348 36-114 (141)
368 PF07531 TAFH: NHR1 homology t 30.2 1.6E+02 0.0034 26.5 6.0 74 153-249 6-80 (96)
369 PF04499 SAPS: SIT4 phosphatas 30.0 4.5E+02 0.0098 30.3 11.3 63 112-187 32-95 (475)
370 KOG1877 Putative transmembrane 29.8 2.5E+02 0.0055 34.4 9.4 138 193-330 49-203 (819)
371 KOG0905 Phosphoinositide 3-kin 29.7 87 0.0019 39.5 5.6 44 126-172 902-945 (1639)
372 PF14228 MOR2-PAG1_mid: Cell m 29.5 4.6E+02 0.01 33.6 12.0 122 132-253 934-1118(1120)
373 PF07539 DRIM: Down-regulated 29.0 1.7E+02 0.0037 27.9 6.6 131 18-162 2-139 (141)
374 PRK08691 DNA polymerase III su 28.8 3.3E+02 0.0072 33.0 10.2 70 339-408 263-340 (709)
375 PLN03060 inositol phosphatase- 28.5 5.2E+02 0.011 26.5 10.1 98 69-171 69-174 (206)
376 PF01417 ENTH: ENTH domain; I 27.9 2.6E+02 0.0057 25.6 7.5 71 192-262 35-117 (125)
377 PF11701 UNC45-central: Myosin 27.5 3E+02 0.0065 26.5 8.1 130 43-178 16-153 (157)
378 PRK07994 DNA polymerase III su 27.2 4.3E+02 0.0093 31.8 10.8 44 277-320 180-223 (647)
379 PF14677 FANCI_S3: FANCI solen 27.1 3.6E+02 0.0078 27.7 9.0 130 112-243 77-219 (219)
380 COG5657 CSE1 CAS/CSE protein i 26.8 1.3E+03 0.029 28.7 27.3 172 171-345 509-686 (947)
381 PRK13266 Thf1-like protein; Re 25.8 6.3E+02 0.014 26.2 10.3 78 69-146 71-157 (225)
382 COG1698 Uncharacterized protei 25.8 4.5E+02 0.0097 23.4 7.8 74 69-144 13-91 (93)
383 cd00869 PI3Ka_II Phosphoinosit 25.6 1.4E+02 0.003 29.5 5.4 48 191-243 68-115 (169)
384 PRK07764 DNA polymerase III su 25.2 6.8E+02 0.015 31.0 12.3 45 278-322 182-226 (824)
385 cd08307 Death_Pelle Death doma 25.2 1.8E+02 0.004 26.0 5.6 34 458-492 39-72 (97)
386 KOG2085 Serine/threonine prote 25.2 1E+03 0.023 27.0 13.8 216 26-267 170-415 (457)
387 PF12726 SEN1_N: SEN1 N termin 25.0 1.3E+03 0.028 28.0 34.4 187 31-218 119-339 (727)
388 smart00544 MA3 Domain in DAP-5 24.7 1.9E+02 0.0041 25.8 5.8 74 28-101 32-108 (113)
389 PF06371 Drf_GBD: Diaphanous G 24.4 2.8E+02 0.006 26.8 7.4 58 126-183 128-186 (187)
390 PF07571 DUF1546: Protein of u 23.8 1.3E+02 0.0027 26.5 4.3 59 290-348 17-77 (92)
391 PF14961 BROMI: Broad-minded p 23.7 1.6E+02 0.0034 37.5 6.4 54 43-99 173-229 (1296)
392 PRK14956 DNA polymerase III su 23.6 5E+02 0.011 30.0 10.1 47 319-367 248-294 (484)
393 PF11935 DUF3453: Domain of un 23.4 8.3E+02 0.018 25.2 17.7 144 41-188 2-194 (239)
394 KOG2199 Signal transducing ada 23.4 6.1E+02 0.013 28.5 10.1 47 320-366 45-98 (462)
395 PF12054 DUF3535: Domain of un 23.2 1.1E+03 0.025 26.7 19.7 232 46-289 101-364 (441)
396 PF05478 Prominin: Prominin; 23.1 6.6E+02 0.014 30.9 11.8 81 370-457 213-294 (806)
397 PF04063 DUF383: Domain of unk 22.9 7.8E+02 0.017 24.7 11.6 121 40-184 3-132 (192)
398 PF04388 Hamartin: Hamartin pr 22.9 1.3E+03 0.028 27.9 13.8 153 157-330 6-162 (668)
399 PF01417 ENTH: ENTH domain; I 22.1 2.5E+02 0.0054 25.8 6.2 73 275-348 35-120 (125)
400 PF09759 Atx10homo_assoc: Spin 21.8 1.2E+02 0.0026 27.4 3.8 33 116-148 30-64 (102)
401 PRK14957 DNA polymerase III su 21.8 6.8E+02 0.015 29.4 11.0 25 296-320 199-223 (546)
402 PF12612 TFCD_C: Tubulin foldi 21.5 8E+02 0.017 24.3 11.1 128 234-369 4-140 (193)
403 KOG2759 Vacuolar H+-ATPase V1 21.2 1.1E+03 0.024 26.9 11.6 70 195-265 365-437 (442)
404 PF06694 Plant_NMP1: Plant nuc 20.9 1.1E+03 0.024 25.6 15.0 50 316-368 104-158 (325)
405 PRK14969 DNA polymerase III su 20.7 5.5E+02 0.012 30.0 9.9 29 379-407 311-339 (527)
406 TIGR03060 PS_II_psb29 photosys 20.6 7.3E+02 0.016 25.6 9.5 98 69-169 71-180 (214)
407 PF13764 E3_UbLigase_R4: E3 ub 20.6 1.7E+03 0.036 27.6 19.4 81 69-149 163-264 (802)
408 KOG3678 SARM protein (with ste 20.3 5.9E+02 0.013 29.4 9.4 19 43-61 318-336 (832)
409 KOG2122 Beta-catenin-binding p 20.2 5.4E+02 0.012 34.0 9.8 215 45-265 364-600 (2195)
410 PRK14949 DNA polymerase III su 20.0 7.7E+02 0.017 31.0 11.1 42 278-319 181-222 (944)
No 1
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.5e-144 Score=1160.15 Aligned_cols=573 Identities=53% Similarity=0.868 Sum_probs=540.9
Q ss_pred hhhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhh
Q 005727 26 SETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVT 105 (680)
Q Consensus 26 ~~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkdiv~ 105 (680)
.+.|++.+++||+.||+|+|.+|||||||++|||+|++||+++.|||+|||+|||+.+|+|.+||+||++|||++||||+
T Consensus 78 ~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 78 DAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVT 157 (675)
T ss_pred cHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhcc
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-cccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 005727 106 ESD-QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (680)
Q Consensus 106 es~-~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ 184 (680)
|++ +|+++.|||+|.+|+|+.||.+|+|+++||++++++|+.+|+.|+|+|++|||++|+|++++||..++.++++|++
T Consensus 158 e~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~ 237 (675)
T KOG0212|consen 158 ESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLA 237 (675)
T ss_pred ccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 987 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCC-ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCch-hHHHHHHHHHH
Q 005727 185 EIKNSPSV-DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEE-KIRVVARETNE 262 (680)
Q Consensus 185 ei~~~~~~-d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~-eIR~~A~~~n~ 262 (680)
+|+++|.. |++.++++++.+++++++++|..|+.||.||+.++|.++++|+++++.++|||++|+++ .+++.|...|+
T Consensus 238 eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~ 317 (675)
T KOG0212|consen 238 EIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNG 317 (675)
T ss_pred HHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHH
Confidence 99999987 99999999999999999999999999999999999999999999999999999999988 69999999999
Q ss_pred HHHHhccCC--CCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHH
Q 005727 263 ELRAIKADP--ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLV 340 (680)
Q Consensus 263 ~Ll~~v~~~--~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~a 340 (680)
.+++.+.+. ++.+|++.+++++.+++.++.++||++||+|+..++.+.|.++.-|.+.+|++|+++|+|+|++|+..+
T Consensus 318 ~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~ 397 (675)
T KOG0212|consen 318 LLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLA 397 (675)
T ss_pred HHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHH
Confidence 999988654 345999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh--ccchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcChhhHHHHHHHhhcccCChhHHHHHHHHHHH
Q 005727 341 LEVHACIAK--DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNL 418 (680)
Q Consensus 341 l~lLa~Is~--~~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~e~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~ 418 (680)
+.+++.|++ +..++.+|+..||++|+.++++++.||++||||||.+++||+||+.+|+||+.++|++||++|||+||+
T Consensus 398 L~lla~i~~s~~~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~e~nl~FAstMV~~Ln~ 477 (675)
T KOG0212|consen 398 LSLLASICSSSNSPNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILEREENLKFASTMVQALNT 477 (675)
T ss_pred HHHHHHHhcCcccccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhccccchHHHHHHHHHHh
Confidence 999999994 455789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhchHHHHHHHHHHhhccCCcchHHHHHHHHHHhccChhHHHHHHHHhhhhHHHHHHHHHHhhcCcchhhHHhHHHHHH
Q 005727 419 ILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIR 498 (680)
Q Consensus 419 iLLTa~EL~~lR~~L~~~l~~~~~~~lF~~L~~~w~~n~v~~~slcll~~~Y~~a~~ll~~~~~~~~~~~~l~qid~LVq 498 (680)
||+||+||.++|++||+ +.+.+++++|.+||++|||||||++|||||||||+|||++++.|++.|+||++|+|+|||||
T Consensus 478 iLlTStELf~LR~~Lk~-lsn~es~~lF~cLy~sWchnPva~~SLClLtQnYqhA~~liq~fa~~eitvd~L~elDKLVq 556 (675)
T KOG0212|consen 478 ILLTSTELFQLRNKLKD-LSNEESQNLFCCLYRSWCHNPVATLSLCLLTQNYQHAYDLIQLFADVEITVDFLVELDKLVQ 556 (675)
T ss_pred hhcccHHHHHHHHHHHh-ccChhhhHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHhcCCCCCchHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhchhhHhHhh
Q 005727 499 LLETPIFAYLRLQLLEPGRYTWLLKALYGLLMLLPQVSLLYLKIQAQLFCVFLLELHSFMFNLSRDTLMQQSAAFKILRT 578 (680)
Q Consensus 499 LlEsPif~~lRlqLLe~~~~~~l~k~l~gllm~lpq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~af~~l~~ 578 (680)
|+|||||||+|||||||.+||||.|||||||||||| |+||+|||+
T Consensus 557 LiEsPIFtylRLqLLe~~~~pyL~kaLyGlLMLLPQ-----------------------------------S~AF~tL~~ 601 (675)
T KOG0212|consen 557 LIESPIFTYLRLQLLEPKNNPYLHKALYGLLMLLPQ-----------------------------------SSAFQTLRH 601 (675)
T ss_pred HHhcchHHHHHHHHhccccCchHHHHHHHHHHHccc-----------------------------------HHHHHHHHH
Confidence 999999999999999999999999999999999999 999999999
Q ss_pred hhcccCCCCcCcccccccCCCCCCccccccCCCCCCccCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhHHHhhh
Q 005727 579 RLKTVPSFSFNGEQIKRTSSGNPYSQILHSMPSGSQFSEDGDVNSDVGSSHGGINFASRLQQFEQMQHQHRIHGKAQAQL 658 (680)
Q Consensus 579 rl~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~f~~~~~~~~~~~~~~~~~ 658 (680)
||+|||++..+... +..++.|++ .+.+..+|+|++|++||++||.+|+.. ++||..
T Consensus 602 RLqcvp~~~~~~~~--~~~~~~p~s---------------------~~~~~~~idf~~LlqhFkavq~~h~~~-r~~R~~ 657 (675)
T KOG0212|consen 602 RLQCVPNPVGNQTI--DAREAVPFS---------------------QKADSPGIDFAELLQHFKAVQNKHLEQ-REQRSG 657 (675)
T ss_pred HHhcCCchhhccch--hhhccCCcc---------------------cccCCCCCChHHHHHHHHHHHHHHHHH-HHHHhc
Confidence 99999998643211 111111111 123447899999999999999999773 344444
No 2
>PF11916 Vac14_Fig4_bd: Vacuolar protein 14 C-terminal Fig4p binding; InterPro: IPR021841 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 211 to 243 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=100.00 E-value=1.4e-71 Score=535.46 Aligned_cols=182 Identities=62% Similarity=1.045 Sum_probs=177.6
Q ss_pred cchhHHhHHHHHHHHHHhhcChhhHHHHHHHhhcccCChhHHHHHHHHHHHHHhchHHHHHHHHHHhhccCCcchHHHHH
Q 005727 368 DNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFV 447 (680)
Q Consensus 368 d~~lLe~rg~~IIrqLc~~L~~e~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTa~EL~~lR~~L~~~l~~~~~~~lF~ 447 (680)
|++++++||++||||||..+|+|+||+++|++++.++|++|+++|||+||+||+||+|+.+||++||+...+++++++|.
T Consensus 1 D~~LL~~Rg~~IIRqLC~~L~~E~iy~~la~iL~~~~dl~Fas~mVq~LN~iLLTs~EL~~LR~~Lr~~~~~~~~~~lF~ 80 (182)
T PF11916_consen 1 DRKLLERRGSFIIRQLCVLLNAERIYRTLASILESEEDLEFASMMVQTLNNILLTSPELFDLRKKLRNLDTDEEGQSLFS 80 (182)
T ss_pred CHhHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcchHHHHHHHHHHhccccchHHhHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999998334556999999
Q ss_pred HHHHHhccChhHHHHHHHHhhhhHHHHHHHHHHhhcCcchhhHHhHHHHHHhhccchhHHHHHHhcCCCCCchHHHHHHH
Q 005727 448 SLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALYG 527 (680)
Q Consensus 448 ~L~~~w~~n~v~~~slcll~~~Y~~a~~ll~~~~~~~~~~~~l~qid~LVqLlEsPif~~lRlqLLe~~~~~~l~k~l~g 527 (680)
+||+||||||||++|||||+|+|+|||++++.|+++|+|+++|+|||+||||+|||||+++|+|||||++||+|+|||||
T Consensus 81 ~Ly~sWchNpva~lSLcLl~q~Y~~A~~li~~~~~~e~~~~~L~qiD~LVqLlESPiF~~lRlqLLep~~~p~L~k~Lyg 160 (182)
T PF11916_consen 81 TLYRSWCHNPVATLSLCLLAQAYEHAYNLIQSFAELEVTVDFLVQIDKLVQLLESPIFTYLRLQLLEPEKYPYLYKCLYG 160 (182)
T ss_pred HHHHHHhcCHHHHHHHHHHHhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhhhhHHHHHHHhCCcccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccchhhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhchhhHhHhhhhcccC
Q 005727 528 LLMLLPQVSLLYLKIQAQLFCVFLLELHSFMFNLSRDTLMQQSAAFKILRTRLKTVP 584 (680)
Q Consensus 528 llm~lpq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~af~~l~~rl~~v~ 584 (680)
|||+||| |+||++||+||+|||
T Consensus 161 LlMlLPQ-----------------------------------s~af~~L~~RL~~vp 182 (182)
T PF11916_consen 161 LLMLLPQ-----------------------------------SSAFNTLRNRLQSVP 182 (182)
T ss_pred HHHHCCC-----------------------------------hHHHHHHHhhcccCC
Confidence 9999999 999999999999998
No 3
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-40 Score=362.07 Aligned_cols=445 Identities=18% Similarity=0.231 Sum_probs=354.2
Q ss_pred hhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhc
Q 005727 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (680)
Q Consensus 28 ~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~e 106 (680)
.-+.+|...++++++|+++.||.+.+..+..|+. +++ +..|+++++.|+.++..+|.+..+|| .+|.+.++|....
T Consensus 86 ~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s--~~~-~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~ 162 (885)
T KOG2023|consen 86 EVLDYIKSECLHGLGDASPLIRATVGIVITTIAS--TGG-LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQF 162 (885)
T ss_pred HHHHHHHHHHHhhccCchHHHHhhhhheeeeeec--ccc-cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHH
Confidence 4567788999999999999999999988877753 333 45789999999999999999999999 8999999988764
Q ss_pred c----ccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 005727 107 S----DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEF 182 (680)
Q Consensus 107 s----~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~f 182 (680)
- ...+++.+||.+++.+.+++|.+|..++.+++.+.-+....+..+++.|+.+||.+.+|.+++||+..|.++.-+
T Consensus 163 lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~L 242 (885)
T KOG2023|consen 163 LDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFL 242 (885)
T ss_pred HhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 3 358899999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH--hcCcccccchHhHHHHHhhhhcCCchhHH------
Q 005727 183 LQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVK--LGGDQLVPYYADILGAILPCISDKEEKIR------ 254 (680)
Q Consensus 183 L~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~--l~~~~l~pfLp~LLp~LL~~Lsds~~eIR------ 254 (680)
+..-..+..+++++||++|+..++++|++|+++|++.+..+++ ++++.+.||+++++|+++..|.|++.++-
T Consensus 243 levr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~e 322 (885)
T KOG2023|consen 243 LEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNE 322 (885)
T ss_pred HHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCcc
Confidence 7765555667999999999999999999999999994444554 56788999999999999999999865433
Q ss_pred -------------HHHHHHHHHHHHhc-cC---------C-------------CCCCC----------hHhHHHHHHHhc
Q 005727 255 -------------VVARETNEELRAIK-AD---------P-------------ADGFD----------VGPILSIATRQL 288 (680)
Q Consensus 255 -------------~~A~~~n~~Ll~~v-~~---------~-------------~~~ld----------l~~iL~vL~~~L 288 (680)
....+....-..-- .+ . ++.+| ++.++|.|.+.|
T Consensus 323 eD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L 402 (885)
T KOG2023|consen 323 EDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHL 402 (885)
T ss_pred ccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence 22222110000000 00 0 00111 467778899999
Q ss_pred CCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh------hccchHHHHHHHHH
Q 005727 289 SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA------KDLQHFRQLVVFLV 362 (680)
Q Consensus 289 ~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is------~~~~~F~~fm~~LL 362 (680)
.++.|.+|++++..+|+++++|+++|.||++.++|+|+++|+|..+.||+++||+|+|++ +.++||+++|.+|+
T Consensus 403 ~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll 482 (885)
T KOG2023|consen 403 SSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLL 482 (885)
T ss_pred CcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 35789999999999
Q ss_pred HhhcccchhHHhHHHHHHHHHHhhcCh------hhHHHHHHHhhccc--CChhHHHHHHHHHHHHH---hchHHHHHHHH
Q 005727 363 HNFRVDNSLLEKRGALIIRRLCVLLDA------ERVYRELSTILEGE--ADLDFACTMVQALNLIL---LTSSELSELRD 431 (680)
Q Consensus 363 ~lf~~d~~lLe~rg~~IIrqLc~~L~~------e~Iy~~La~iL~~~--~Dl~F~~~mVq~Ln~iL---LTa~EL~~lR~ 431 (680)
+++.+.+|-.++.+-..+..|...-+. |.|..+|.-.+.++ +++-.+...|.+|..-. |..|+.-+
T Consensus 483 ~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~Yiq--- 559 (885)
T KOG2023|consen 483 RRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQ--- 559 (885)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHH---
Confidence 999988887888888888888877776 45555555555555 67888889999987654 44444322
Q ss_pred HHhhcc------CCcchHHHHHHHHHHhccChhHHHHHHHH--h-hhhHHHHHHHHHH
Q 005727 432 LLKKSL------VNPAGKDLFVSLYASWCHSPMAIISLCLL--A-QTYHHASAVIQSL 480 (680)
Q Consensus 432 ~L~~~l------~~~~~~~lF~~L~~~w~~n~v~~~slcll--~-~~Y~~a~~ll~~~ 480 (680)
.|...| .++++-++|. |++|.+-= .+++.-.++ + .-|+.+.+|+++-
T Consensus 560 iLmPPLi~KW~~lsd~DKdLfP-LLEClSsi-a~AL~~gF~P~~~~Vy~Rc~~il~~t 615 (885)
T KOG2023|consen 560 ILMPPLIEKWELLSDSDKDLFP-LLECLSSI-ASALGVGFLPYAQPVYQRCFRILQKT 615 (885)
T ss_pred HhccHHHHHHHhcCcccchHHH-HHHHHHHH-HHHHhccccccCHHHHHHHHHHHHHH
Confidence 222211 3455667777 77776211 112221111 1 2899999999844
No 4
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.1e-30 Score=276.72 Aligned_cols=523 Identities=20% Similarity=0.293 Sum_probs=398.6
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHHHhhcc-chhhhHHHHHHHHH-HhhcCCChhHHHHH-HHHHHHHHHHhhcccccc
Q 005727 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRG-DFIIFFNQIFDALC-KLSADSDANVQSAA-HLLDRLVKDIVTESDQFS 111 (680)
Q Consensus 35 ~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~-~il~~f~eIfd~L~-kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~ 111 (680)
..+.++++|+-++.|++|+..+.+++|.+-. +-..++..+++.|+ ..+..++.+.|+|+ .++.+..-.+..+.+. .
T Consensus 3 ~~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~-Y 81 (675)
T KOG0212|consen 3 ASIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAG-Y 81 (675)
T ss_pred hHhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHH-H
Confidence 4578999999999999999999999887643 44567889999888 46678888889998 7788877767766655 6
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC-
Q 005727 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP- 190 (680)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~- 190 (680)
++.++|++..++++++.++|++||+.++++.++.+.+...|++++++.|+++.+|++..||.+| +++++++++|....
T Consensus 82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-eLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-ELLDRLIKDIVTESA 160 (675)
T ss_pred HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-HHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999987 79999999997543
Q ss_pred -CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhcc
Q 005727 191 -SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA 269 (680)
Q Consensus 191 -~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~ 269 (680)
.++++.+||.|-.++...++.+|...+.||..+...++-.|..|+|.++++++.+++|+.++||.++..+.+++++.+.
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHH-HHHHH---HHHHH
Q 005727 270 DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDE-VVLLV---LEVHA 345 (680)
Q Consensus 270 ~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~e-V~~~a---l~lLa 345 (680)
+.+..+|++.+++++..++.++++.++..|+.|+-.+....|.++.+++.+++..++++++|..+. +...+ -..+.
T Consensus 241 s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~ 320 (675)
T KOG0212|consen 241 SSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLL 320 (675)
T ss_pred cCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHH
Confidence 888888999999999999999999999999999999999999999999999999999999998774 33322 22344
Q ss_pred HHh-h----ccchHHHHHHHHHHhhcccchhHHhHHHH--HHHHHHhhcCh------hhHHHHHHHhhcccCChhHHHHH
Q 005727 346 CIA-K----DLQHFRQLVVFLVHNFRVDNSLLEKRGAL--IIRRLCVLLDA------ERVYRELSTILEGEADLDFACTM 412 (680)
Q Consensus 346 ~Is-~----~~~~F~~fm~~LL~lf~~d~~lLe~rg~~--IIrqLc~~L~~------e~Iy~~La~iL~~~~Dl~F~~~m 412 (680)
.+. + .+-.|.++|..+.+.+.+|+. ++|.+. ||+.|-.+.+. ..||.++-.-|++..| +.+...
T Consensus 321 ~l~s~~~~~~~id~~~ii~vl~~~l~~~~~--~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd-~vvl~~ 397 (675)
T KOG0212|consen 321 KLVSSERLKEEIDYGSIIEVLTKYLSDDRE--ETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSD-EVVLLA 397 (675)
T ss_pred HHHhhhhhccccchHHHHHHHHHHhhcchH--HHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchh-HHHHHH
Confidence 444 2 234577999999999999876 567666 99999999887 4788888888876555 333333
Q ss_pred HHHHHHHHhchHHHHHHHHHHhhccCCcchHHHHHH---HHHHhccChhHH---HHHHHHhhhhHHHHHHHHHHhhcCcc
Q 005727 413 VQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVS---LYASWCHSPMAI---ISLCLLAQTYHHASAVIQSLVEEDLN 486 (680)
Q Consensus 413 Vq~Ln~iLLTa~EL~~lR~~L~~~l~~~~~~~lF~~---L~~~w~~n~v~~---~slcll~~~Y~~a~~ll~~~~~~~~~ 486 (680)
...|..|--.+.. ..+|+-|... .++|.. +.+. .+. ==||++-. =|+.|+.+..+-+-|-+
T Consensus 398 L~lla~i~~s~~~-~~~~~fl~sL------L~~f~e~~~~l~~-----Rg~lIIRqlC~lL~-aE~IYr~~a~ILe~e~n 464 (675)
T KOG0212|consen 398 LSLLASICSSSNS-PNLRKFLLSL------LEMFKEDTKLLEV-----RGNLIIRQLCLLLN-AERIYRSIADILEREEN 464 (675)
T ss_pred HHHHHHHhcCccc-ccHHHHHHHH------HHHHhhhhHHHHh-----hhhHHHHHHHHHhC-HHHHHHHHHHHHhcccc
Confidence 4444444332222 2445555541 122211 0000 111 12455443 23444444433333444
Q ss_pred hhhHHhHHHHHH-----hhccchhHHHHHHhc--CCCCCchHHHHHHH----------HHhhhccchhhHHHH--HHHHH
Q 005727 487 VKFLVQLDKLIR-----LLETPIFAYLRLQLL--EPGRYTWLLKALYG----------LLMLLPQVSLLYLKI--QAQLF 547 (680)
Q Consensus 487 ~~~l~qid~LVq-----LlEsPif~~lRlqLL--e~~~~~~l~k~l~g----------llm~lpq~~~~~~~~--~~~~~ 547 (680)
.+|=- -+|| |+-||-.-.||=+|= .-++-..|+.|||- -|-+|-|+ |-.. -.|+|
T Consensus 465 l~FAs---tMV~~Ln~iLlTStELf~LR~~Lk~lsn~es~~lF~cLy~sWchnPva~~SLClLtQn---YqhA~~liq~f 538 (675)
T KOG0212|consen 465 LKFAS---TMVQALNTILLTSTELFQLRNKLKDLSNEESQNLFCCLYRSWCHNPVATLSLCLLTQN---YQHAYDLIQLF 538 (675)
T ss_pred chHHH---HHHHHHHhhhcccHHHHHHHHHHHhccChhhhHHHHHHHHHHcCCcHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 43322 2333 457888888888776 36677889999992 35566674 2110 11222
Q ss_pred ------HHHHHhhhhhhhhcchhhhhh--hchhhHhHhhhhcccCCCCcCc
Q 005727 548 ------CVFLLELHSFMFNLSRDTLMQ--QSAAFKILRTRLKTVPSFSFNG 590 (680)
Q Consensus 548 ------~~~~~~~~~~~~~~~~~~~~~--~s~af~~l~~rl~~v~~~~~~~ 590 (680)
.-||.|+ |.|.| .|+-|.-||=-|=..-+..+++
T Consensus 539 a~~eitvd~L~el---------DKLVqLiEsPIFtylRLqLLe~~~~pyL~ 580 (675)
T KOG0212|consen 539 ADVEITVDFLVEL---------DKLVQLIESPIFTYLRLQLLEPKNNPYLH 580 (675)
T ss_pred hhhhhhHHHHHHH---------HHHHHHHhcchHHHHHHHHhccccCchHH
Confidence 2244443 33333 4999999987776666555544
No 5
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.83 E-value=1.2e-20 Score=167.40 Aligned_cols=78 Identities=69% Similarity=1.125 Sum_probs=76.1
Q ss_pred hhhhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHH
Q 005727 25 YSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKD 102 (680)
Q Consensus 25 ~~~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkd 102 (680)
.+.+|++.|++||+.||+|+|+||||||||++|||+|+++++++++|++||++|+++++|+|++||+||+.|||++||
T Consensus 20 ~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llkd 97 (97)
T PF12755_consen 20 DISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAELLDRLLKD 97 (97)
T ss_pred hHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcC
Confidence 389999999999999999999999999999999999999999999999999999999999999999999999999986
No 6
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=5.4e-17 Score=189.67 Aligned_cols=316 Identities=16% Similarity=0.203 Sum_probs=239.9
Q ss_pred hhhhhhhHHHHhhccC-CCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHh
Q 005727 27 ETILQQIVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIV 104 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~-D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv 104 (680)
+.-...|...+|.++. .+.+.||..-|..+..|++..-.+ .||++++.|.....+++++.|+.| ..|..+.. ++
T Consensus 74 ~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e---~WPell~~L~q~~~S~~~~~rE~al~il~s~~~-~~ 149 (1075)
T KOG2171|consen 74 AEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE---KWPELLQFLFQSTKSPNPSLRESALLILSSLPE-TF 149 (1075)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhh-hh
Confidence 3445667788888874 678999999999887777543333 799999999999999999999999 55665544 44
Q ss_pred hccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc--hhhhhchHHHHHHHH----HhcCCCChhHHHHHHHH
Q 005727 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD--IDMLGFLPDFLDGLF----NMLSDSSHEIRQQADSA 178 (680)
Q Consensus 105 ~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~--~~Li~~Lp~~L~~Lf----~lLsD~~~dVR~~a~~~ 178 (680)
.+.....+..|.+.+.++|.+++..||..++..++.+....+ .+....+-.++|+++ ..+.+.+.+.-+.+-++
T Consensus 150 ~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~ 229 (1075)
T KOG2171|consen 150 GNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEA 229 (1075)
T ss_pred ccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHH
Confidence 454555688999999999999887799999999997766543 444444444555444 45555566666666667
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHhcCc---ccccchHhHHHHHhhhhcCCchh-
Q 005727 179 LWEFLQEIKNSPSVDYGRMAEILVQRAASP--DEFTRLTAITWINEFVKLGGD---QLVPYYADILGAILPCISDKEEK- 252 (680)
Q Consensus 179 L~~fL~ei~~~~~~d~~~II~iLl~~~~s~--d~~irl~Al~WL~e~~~l~~~---~l~pfLp~LLp~LL~~Lsds~~e- 252 (680)
|.+|+...+.-....+..|+...+.-..++ |+.+|..|++.|-.+.+.+|. ...+|.+++++.++.+|.+.+.+
T Consensus 230 l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ 309 (1075)
T KOG2171|consen 230 LIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDD 309 (1075)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccch
Confidence 777766554444457888998888877665 588999999977777766542 34568999999999999864221
Q ss_pred ---------------HHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhh
Q 005727 253 ---------------IRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF 317 (680)
Q Consensus 253 ---------------IR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~ 317 (680)
....|.++.+.+.--. +...=++.+++.+...+.+++|.-|-|+|..++.+++||++.|.+.
T Consensus 310 ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L---~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~ 386 (1075)
T KOG2171|consen 310 EWSNEDDLDEDDEETPYRAAEQALDRLALHL---GGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGN 386 (1075)
T ss_pred hhccccccccccccCcHHHHHHHHHHHHhcC---ChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 2233444444322111 1122367889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005727 318 LNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (680)
Q Consensus 318 l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~ 349 (680)
+++++|.+++.|+||+|.||-.||.++++++.
T Consensus 387 l~~Il~~Vl~~l~DphprVr~AA~naigQ~st 418 (1075)
T KOG2171|consen 387 LPKILPIVLNGLNDPHPRVRYAALNAIGQMST 418 (1075)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999994
No 7
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=3.8e-16 Score=184.97 Aligned_cols=313 Identities=19% Similarity=0.230 Sum_probs=229.6
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHH-HHhhccchhhhHHHHHHHHHHhh
Q 005727 4 WYSFLFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNI-AKVVRGDFIIFFNQIFDALCKLS 82 (680)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI-~kv~~~~il~~f~eIfd~L~kL~ 82 (680)
--||||-.|++|++ ...++|+..++|.+.++=.|||+.||.+-. ++.|. +...+..+-.|+|+|++.|...+
T Consensus 976 GaAfGf~~i~~~a~------~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~-sIW~~Li~D~k~~vd~y~neIl~eLL~~l 1048 (1702)
T KOG0915|consen 976 GAAFGFGAIAKQAG------EKLEPYLKKLIPRLYRYQYDPDKKVQDAMT-SIWNALITDSKKVVDEYLNEILDELLVNL 1048 (1702)
T ss_pred chhhchHHHHHHHH------HhhhhHHHHhhHHHhhhccCCcHHHHHHHH-HHHHHhccChHHHHHHHHHHHHHHHHHhc
Confidence 36899999999999 899999999999999999999999998533 33332 22223334467777777777767
Q ss_pred cCCChhHHHHHHHHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhc-CCchhhhhchHHHHHHHH
Q 005727 83 ADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDS-VPDIDMLGFLPDFLDGLF 161 (680)
Q Consensus 83 aD~d~~Vr~gA~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~s-ip~~~Li~~Lp~~L~~Lf 161 (680)
++.+..||+++ |..+.-|.. .|-.++...+|+++..+|
T Consensus 1049 t~kewRVReas-----------------------------------------clAL~dLl~g~~~~~~~e~lpelw~~~f 1087 (1702)
T KOG0915|consen 1049 TSKEWRVREAS-----------------------------------------CLALADLLQGRPFDQVKEKLPELWEAAF 1087 (1702)
T ss_pred cchhHHHHHHH-----------------------------------------HHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 77777777666 222222222 334567889999999999
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHHhhcCCCCC--------hHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHHHhcCcccc
Q 005727 162 NMLSDSSHEIRQQADSALWEFLQEIKNSPSVD--------YGRMAEILVQ-RAASPDEFTRLTAITWINEFVKLGGDQLV 232 (680)
Q Consensus 162 ~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d--------~~~II~iLl~-~~~s~d~~irl~Al~WL~e~~~l~~~~l~ 232 (680)
+.+.|-...||++++.+.+.+-+-+.+..+++ ++.++|.|+. ..-+.-+++|..++..+..+.+-+|..+.
T Consensus 1088 RvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lk 1167 (1702)
T KOG0915|consen 1088 RVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELK 1167 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhc
Confidence 99999999999999888888877776655442 4556666654 34456699999999999999999999999
Q ss_pred cchHhHHHHHhhhhcCCchhH-HHHHH-------HHHHHHHHhccCC----------CCCCC---hHhHHHHHHHhcCCC
Q 005727 233 PYYADILGAILPCISDKEEKI-RVVAR-------ETNEELRAIKADP----------ADGFD---VGPILSIATRQLSSE 291 (680)
Q Consensus 233 pfLp~LLp~LL~~Lsds~~eI-R~~A~-------~~n~~Ll~~v~~~----------~~~ld---l~~iL~vL~~~L~~~ 291 (680)
||+|+++|.++...+.-++.+ --.+. ++.+.+...+... -+.+| +++++|.+++.++++
T Consensus 1168 P~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~s 1247 (1702)
T KOG0915|consen 1168 PHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGS 1247 (1702)
T ss_pred chhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc
Confidence 999999999999988766542 22222 2222222222111 12344 478899999988754
Q ss_pred -cHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHH---HHHHHHHHHhhccchHHHHHHHHHHhh
Q 005727 292 -WEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVL---LVLEVHACIAKDLQHFRQLVVFLVHNF 365 (680)
Q Consensus 292 -~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~---~al~lLa~Is~~~~~F~~fm~~LL~lf 365 (680)
.-.||..|-..+..|..+++.+|.||..+++.+++....|.++.|+. .|+--|.++++ +..+.+.+..++.-+
T Consensus 1248 Vgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss-~dq~qKLie~~l~~~ 1324 (1702)
T KOG0915|consen 1248 VGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSS-PDQMQKLIETLLADL 1324 (1702)
T ss_pred CCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHH
Confidence 45699999999999999999999999999999999999998888876 34445555553 445555555555444
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=4.3e-14 Score=165.70 Aligned_cols=352 Identities=18% Similarity=0.188 Sum_probs=244.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHH-HHHHHhhcCCC
Q 005727 8 LFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIF-DALCKLSADSD 86 (680)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIf-d~L~kL~aD~d 86 (680)
-+..|+|-|. ..+...++.|++.|+..+.||++||||+||.++..++.....++..+..+.+ ++|....+|++
T Consensus 371 Als~i~EGc~------~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~ 444 (1075)
T KOG2171|consen 371 ALSVIAEGCS------DVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQ 444 (1075)
T ss_pred HHHHHHcccH------HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccC
Confidence 3567777777 6667899999999999999999999999999999988777777775555544 47777777776
Q ss_pred h-hHHHHH-HHHHHHHHHHhhccccccHhhhHH-HHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHh
Q 005727 87 A-NVQSAA-HLLDRLVKDIVTESDQFSIEEFIP-LLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNM 163 (680)
Q Consensus 87 ~-~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP-~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~l 163 (680)
. .|...| .+++.+.++...+.=...|+.++. .+........|.+|..+++.|+.++.-....+++|++.+++.|.+.
T Consensus 445 ~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~ 524 (1075)
T KOG2171|consen 445 NVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNF 524 (1075)
T ss_pred chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHH
Confidence 5 777766 667776665443321234566666 5555556788999999999999999999999999999999999999
Q ss_pred cCCCC----hhHHHHHHHHHHHHHHHhhcC-CCCChHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhcCcccccch
Q 005727 164 LSDSS----HEIRQQADSALWEFLQEIKNS-PSVDYGRMAEILVQRA---ASPDEFTRLTAITWINEFVKLGGDQLVPYY 235 (680)
Q Consensus 164 LsD~~----~dVR~~a~~~L~~fL~ei~~~-~~~d~~~II~iLl~~~---~s~d~~irl~Al~WL~e~~~l~~~~l~pfL 235 (680)
+..++ ++.|-.+.+|++.....+++. ...+-.++|+.+.... .+.|...+...+..++.++++.|.+|.||+
T Consensus 525 L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L 604 (1075)
T KOG2171|consen 525 LQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFL 604 (1075)
T ss_pred HhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHH
Confidence 96654 456666778888777777643 3446688899888873 333445566666666789999999999999
Q ss_pred HhHHHHHhhhhcCCc-------h-----------------------------hHHHHHHHHHHHHHHhccCCCCCCChHh
Q 005727 236 ADILGAILPCISDKE-------E-----------------------------KIRVVARETNEELRAIKADPADGFDVGP 279 (680)
Q Consensus 236 p~LLp~LL~~Lsds~-------~-----------------------------eIR~~A~~~n~~Ll~~v~~~~~~ldl~~ 279 (680)
|.++|.+++...... . +-+..|....+.+....+. +......+
T Consensus 605 ~~Vmppl~~ta~~~p~~~~~d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~-~F~pYve~ 683 (1075)
T KOG2171|consen 605 PVVMPPLLKTARLDPDVALSDEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKE-AFAPYVEQ 683 (1075)
T ss_pred HHHhHHHHHhhccCCcccCcCchhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhh-hhhhHHHH
Confidence 999999999775321 0 0111222222221111110 11122355
Q ss_pred HHHH-HHHhcCCCcHHHHHHHHHHHHHHHh-------hChhhHhhhhHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHh--
Q 005727 280 ILSI-ATRQLSSEWEATRIEALHWISTLLN-------RHRTEVLHFLNDIFDTLLKALSDP-SDEVVLLVLEVHACIA-- 348 (680)
Q Consensus 280 iL~v-L~~~L~~~~~~tR~aaL~WL~~L~~-------~~p~~~~~~l~~l~p~LL~~LsD~-s~eV~~~al~lLa~Is-- 348 (680)
+++. +-.....-+..+|.+|+.-+..+.. ++|..+.+....++|.+++.+.++ +.+|....++.++.--
T Consensus 684 v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~ 763 (1075)
T KOG2171|consen 684 VVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEV 763 (1075)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHh
Confidence 5552 2222234456789999975554333 678888899999999999999887 5666666676666432
Q ss_pred -----hccchHHHHHHHHHHhhc
Q 005727 349 -----KDLQHFRQLVVFLVHNFR 366 (680)
Q Consensus 349 -----~~~~~F~~fm~~LL~lf~ 366 (680)
=++.+.+.+..+++....
T Consensus 764 ~G~~~L~~~~~~~~~~~~~~~~l 786 (1075)
T KOG2171|consen 764 MGDNCLNEDGLEALLGGLLAQLL 786 (1075)
T ss_pred cCcccCCcHHHHHHHHHHHHHHH
Confidence 145666666555555443
No 9
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=4.8e-14 Score=156.46 Aligned_cols=345 Identities=20% Similarity=0.250 Sum_probs=269.8
Q ss_pred hhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHH---------
Q 005727 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRL--------- 99 (680)
Q Consensus 30 L~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrl--------- 99 (680)
++.+++.+.+--+|+|+.||+-.|.++.-+-.+..+.+.++...|.+...+...|+|.+|.-.| +..-.+
T Consensus 213 iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~ 292 (885)
T KOG2023|consen 213 IDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEV 292 (885)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHH
Confidence 4445555555569999999999999988877666667789999999999999999999988777 532221
Q ss_pred ----HHHHhh--------------------cc------------------------------------------------
Q 005727 100 ----VKDIVT--------------------ES------------------------------------------------ 107 (680)
Q Consensus 100 ----lkdiv~--------------------es------------------------------------------------ 107 (680)
+++++- |.
T Consensus 293 L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLR 372 (885)
T KOG2023|consen 293 LQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLR 372 (885)
T ss_pred HHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHh
Confidence 111110 00
Q ss_pred --------------ccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHH
Q 005727 108 --------------DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQ 173 (680)
Q Consensus 108 --------------~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~ 173 (680)
+..-++.++|.|.+.+.++++.+|+..|-.++.++.-.-..+.+|+|++.+.|..+|.|..+-||+
T Consensus 373 kCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRs 452 (885)
T KOG2023|consen 373 KCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRS 452 (885)
T ss_pred hccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceee
Confidence 013367889999999999999999999999999998888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCC-CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhc-CCc-
Q 005727 174 QADSALWEFLQEIKNSPS-VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS-DKE- 250 (680)
Q Consensus 174 ~a~~~L~~fL~ei~~~~~-~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Ls-ds~- 250 (680)
.+|=.|+++-+=+...+. .++.+++.-++.++-+++..||..|+.....+-+-+++.++||+..|+..+..+.+ |..
T Consensus 453 ITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~K 532 (885)
T KOG2023|consen 453 ITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKK 532 (885)
T ss_pred eeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999887755443 46889999999999999999999999999999999999999999999999998887 332
Q ss_pred ------hhHHHHHHHHHHHH-----HHh-----------ccC--------------------------------------
Q 005727 251 ------EKIRVVARETNEEL-----RAI-----------KAD-------------------------------------- 270 (680)
Q Consensus 251 ------~eIR~~A~~~n~~L-----l~~-----------v~~-------------------------------------- 270 (680)
+.|+..|..+...+ ++. +.+
T Consensus 533 NLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il 612 (885)
T KOG2023|consen 533 NLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRIL 612 (885)
T ss_pred ceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHH
Confidence 23555554442111 000 000
Q ss_pred -------------C-CC---------CCC------------h------HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Q 005727 271 -------------P-AD---------GFD------------V------GPILSIATRQLSSEWEATRIEALHWISTLLNR 309 (680)
Q Consensus 271 -------------~-~~---------~ld------------l------~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~ 309 (680)
+ .+ .+| . ..++..+.+.+.++..++|.+|.-.+|.+..-
T Consensus 613 ~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~ 692 (885)
T KOG2023|consen 613 QKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKA 692 (885)
T ss_pred HHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 0 00 011 1 23555677778899999999999999999999
Q ss_pred ChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHhhccc---chhHHh
Q 005727 310 HRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-----KDLQHFRQLVVFLVHNFRVD---NSLLEK 374 (680)
Q Consensus 310 ~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is-----~~~~~F~~fm~~LL~lf~~d---~~lLe~ 374 (680)
|++.+.|+.++++|.+..-|+-+.-.|...|+|.+++|+ +..+|-.+++..|...+... +.++|.
T Consensus 693 c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllEN 765 (885)
T KOG2023|consen 693 CFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLEN 765 (885)
T ss_pred HHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHHh
Confidence 999999999999999997777666778889999999999 35678888888888877533 456664
No 10
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=9.7e-14 Score=154.69 Aligned_cols=390 Identities=15% Similarity=0.153 Sum_probs=288.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcC
Q 005727 5 YSFLFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSAD 84 (680)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD 84 (680)
|+|.-|--+--.+..+...-...+-...++...+..++-|.+.||.+...++-.......+... ..+..-+.++++-
T Consensus 69 ~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~---~~~l~~l~~ll~~ 145 (569)
T KOG1242|consen 69 NDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG---EYVLELLLELLTS 145 (569)
T ss_pred hHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH---HHHHHHHHHHhcc
Confidence 4444444443333333344455566777889999999999999999998887666544443322 2344445556665
Q ss_pred CChhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHH-HHHHHHHHhhcCCchhhhhchHHHHHHHHH
Q 005727 85 SDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQ-FLVGWITVLDSVPDIDMLGFLPDFLDGLFN 162 (680)
Q Consensus 85 ~d~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~-~avswI~~L~sip~~~Li~~Lp~~L~~Lf~ 162 (680)
++..-|.|| ..+..++++...+.. .-..|+-.+.+.+.+.++..|. .+.-........-+...-+|+..+++.++.
T Consensus 146 ~~~~~~~~aa~~~ag~v~g~~i~~~--~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~ 223 (569)
T KOG1242|consen 146 TKIAERAGAAYGLAGLVNGLGIESL--KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILT 223 (569)
T ss_pred ccHHHHhhhhHHHHHHHcCcHHhhh--hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHH
Confidence 666566666 788888886665432 2345899999999998775554 344444444444456678999999999999
Q ss_pred hcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHH
Q 005727 163 MLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAI 242 (680)
Q Consensus 163 lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~L 242 (680)
..+|..++||.+|..+....++.+ +...+..+++-++..+.+..+..+..+++.++.+....+..+--++|.++|.+
T Consensus 224 ~~~d~~~~Vr~Aa~~a~kai~~~~---~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~l 300 (569)
T KOG1242|consen 224 NFGDKINKVREAAVEAAKAIMRCL---SAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVL 300 (569)
T ss_pred HhhccchhhhHHHHHHHHHHHHhc---CcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHH
Confidence 999999999999999888887655 23457788888888877767778899999999999999999999999999999
Q ss_pred hhhhcCCchhHHHHHHHHHHHHHHhcc----------------CCC-------------------CCCChHhHHHHHHHh
Q 005727 243 LPCISDKEEKIRVVARETNEELRAIKA----------------DPA-------------------DGFDVGPILSIATRQ 287 (680)
Q Consensus 243 L~~Lsds~~eIR~~A~~~n~~Ll~~v~----------------~~~-------------------~~ldl~~iL~vL~~~ 287 (680)
-..|.|+.+++|+++.++...+-..+. ++. +...+.-++++|.+.
T Consensus 301 sevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~ 380 (569)
T KOG1242|consen 301 SEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRG 380 (569)
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHH
Confidence 999999999999999988765443332 221 123467888999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHhh--ChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--ccchHHHHHHHHHH
Q 005727 288 LSSEWEATRIEALHWISTLLNR--HRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQHFRQLVVFLVH 363 (680)
Q Consensus 288 L~~~~~~tR~aaL~WL~~L~~~--~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~--~~~~F~~fm~~LL~ 363 (680)
+...+..++..+...++.++.. +|..+.||++.++|.+-+.+.|+.||||..+.++|+.+-+ ++.+|++..+.+.+
T Consensus 381 l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e 460 (569)
T KOG1242|consen 381 LAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSE 460 (569)
T ss_pred HhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHH
Confidence 9766666655555555655555 5999999999999999999999999999999999976663 46777888888888
Q ss_pred hhcccchhHHhHHH-HHHHHHHhhcChhhHHHHHHHhhcc
Q 005727 364 NFRVDNSLLEKRGA-LIIRRLCVLLDAERVYRELSTILEG 402 (680)
Q Consensus 364 lf~~d~~lLe~rg~-~IIrqLc~~L~~e~Iy~~La~iL~~ 402 (680)
....+......-|. .-+...|..++-|+....+++++..
T Consensus 461 ~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~~~~~~~~a~ 500 (569)
T KOG1242|consen 461 TLTSEKSLVDRSGAAQDLSEVLAGLGVEKVEDILPEILAN 500 (569)
T ss_pred hhccchhhhhhHHHhhhHHHHHhcccchHHHHHHHHHHHH
Confidence 87666544443332 2666777777778888888888765
No 11
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=6.4e-14 Score=156.09 Aligned_cols=320 Identities=16% Similarity=0.173 Sum_probs=254.5
Q ss_pred hHHHHhhccCCCCHHHHH-HHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhcccccc
Q 005727 33 IVPPVLNSFSDQDSRVRY-YACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFS 111 (680)
Q Consensus 33 Iv~~VL~~l~D~d~rVR~-~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkdiv~es~~f~ 111 (680)
++..+-...+|..+..|. .+.-+.............+|+..+++.++..++|..+.||.+|.. .+|.+...-.++.
T Consensus 175 ~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~---a~kai~~~~~~~a 251 (569)
T KOG1242|consen 175 FLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVE---AAKAIMRCLSAYA 251 (569)
T ss_pred HHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHH---HHHHHHHhcCcch
Confidence 556667777888655555 343333222222233445899999999999999999999999943 3444555556788
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCC
Q 005727 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS 191 (680)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~ 191 (680)
+..++|.+...+....|+++..+++.++.+....+..+..++|++++.|...|+|+.++||+++.+++..+...+.+
T Consensus 252 VK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN--- 328 (569)
T KOG1242|consen 252 VKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN--- 328 (569)
T ss_pred hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc---
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999887754
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccc-----cchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHH
Q 005727 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV-----PYYADILGAILPCISDKEEKIRVVARETNEELRA 266 (680)
Q Consensus 192 ~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~-----pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~ 266 (680)
.++..++|.|+.++.++...+.. ++.- ++...|+ |-+.-++|.+-..+.+.+.++++.+...-+.+..
T Consensus 329 ~dI~~~ip~Lld~l~dp~~~~~e-~~~~------L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~ 401 (569)
T KOG1242|consen 329 PDIQKIIPTLLDALADPSCYTPE-CLDS------LGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCK 401 (569)
T ss_pred HHHHHHHHHHHHHhcCcccchHH-HHHh------hcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence 57999999999999998844332 1211 2222222 5588899999999999998888888888777777
Q ss_pred hccCCCCC-CChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHH-HHHHHHHH
Q 005727 267 IKADPADG-FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEV-VLLVLEVH 344 (680)
Q Consensus 267 ~v~~~~~~-ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV-~~~al~lL 344 (680)
++.++..- ..++.++|.|...+.+...++|.-+.+.++.+.++.++.-. ++..|.+...++++..++ +..+.+.+
T Consensus 402 LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f---~d~~p~l~e~~~~~k~~~~~~g~aq~l 478 (569)
T KOG1242|consen 402 LVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF---DDLIPELSETLTSEKSLVDRSGAAQDL 478 (569)
T ss_pred hhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc---cccccHHHHhhccchhhhhhHHHhhhH
Confidence 77654432 23688999999999998888999999999999999887755 899999999999987766 45777888
Q ss_pred HHHhh--ccchHHHHHHHHHHhhccc
Q 005727 345 ACIAK--DLQHFRQLVVFLVHNFRVD 368 (680)
Q Consensus 345 a~Is~--~~~~F~~fm~~LL~lf~~d 368 (680)
++... +..++.+.|.+++......
T Consensus 479 ~evl~~~~v~~~~~~~~~~~a~~~~~ 504 (569)
T KOG1242|consen 479 SEVLAGLGVEKVEDILPEILANASSV 504 (569)
T ss_pred HHHHhcccchHHHHHHHHHHHHHhhc
Confidence 88773 6788999999988877544
No 12
>PRK09687 putative lyase; Provisional
Probab=99.58 E-value=6.5e-13 Score=140.12 Aligned_cols=260 Identities=15% Similarity=0.087 Sum_probs=206.4
Q ss_pred hhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhh
Q 005727 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~ 105 (680)
..|=..=+++++..+.|+|.+||..|..+|..+.. +++++.+.+++.|+++.||..| ..|..+ ..
T Consensus 18 ~~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~l----g~ 83 (280)
T PRK09687 18 SQCKKLNDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCSSKNPIERDIGADILSQL----GM 83 (280)
T ss_pred HHHhhccHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHhCCCHHHHHHHHHHHHhc----CC
Confidence 45556667888899999999999999998865431 5688889999999999999998 666653 11
Q ss_pred ccccccHhhhHHHHHHH-hcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 005727 106 ESDQFSIEEFIPLLRER-MNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (680)
Q Consensus 106 es~~f~L~~fIP~L~e~-i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ 184 (680)
. .......+|.|... ..++++.||..++..++.+.+-. ....|..+..+...+.|+++.||..+..+|+.+
T Consensus 84 ~--~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~----~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~-- 155 (280)
T PRK09687 84 A--KRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKN----PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVI-- 155 (280)
T ss_pred C--ccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc----cccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc--
Confidence 1 01134567888766 68999999999999999885322 234678888899999999999999998888643
Q ss_pred HhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHH
Q 005727 185 EIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (680)
Q Consensus 185 ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~L 264 (680)
.-+..++.|+..+.++++.||..|...++.+ ..--|..++.+...+.|.++++|..|..+.+.
T Consensus 156 --------~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~--------~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~- 218 (280)
T PRK09687 156 --------NDEAAIPLLINLLKDPNGDVRNWAAFALNSN--------KYDNPDIREAFVAMLQDKNEEIRIEAIIGLAL- 218 (280)
T ss_pred --------CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcC--------CCCCHHHHHHHHHHhcCCChHHHHHHHHHHHc-
Confidence 1256889999999999999999999988854 11257899999999999999999999888763
Q ss_pred HHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcC-CCCHHHHHHHHHH
Q 005727 265 RAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS-DPSDEVVLLVLEV 343 (680)
Q Consensus 265 l~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~Ls-D~s~eV~~~al~l 343 (680)
++ -+..++.|.+.+.++. .|..+...+|.+.. +..+|.|.+.+. +++++|+.++.|.
T Consensus 219 ---~~-------~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~----------~~a~p~L~~l~~~~~d~~v~~~a~~a 276 (280)
T PRK09687 219 ---RK-------DKRVLSVLIKELKKGT--VGDLIIEAAGELGD----------KTLLPVLDTLLYKFDDNEIITKAIDK 276 (280)
T ss_pred ---cC-------ChhHHHHHHHHHcCCc--hHHHHHHHHHhcCC----------HhHHHHHHHHHhhCCChhHHHHHHHH
Confidence 22 1578999999998866 57788888888776 368899999996 8899999999998
Q ss_pred HHHH
Q 005727 344 HACI 347 (680)
Q Consensus 344 La~I 347 (680)
+.++
T Consensus 277 ~~~~ 280 (280)
T PRK09687 277 LKRS 280 (280)
T ss_pred HhcC
Confidence 8753
No 13
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.9e-12 Score=146.05 Aligned_cols=333 Identities=14% Similarity=0.126 Sum_probs=243.1
Q ss_pred hhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccch-hhhHHHHHHHHHHhhcCCChh-HHHHH-HHHHHHHHHHhhccc
Q 005727 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF-IIFFNQIFDALCKLSADSDAN-VQSAA-HLLDRLVKDIVTESD 108 (680)
Q Consensus 32 ~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~i-l~~f~eIfd~L~kL~aD~d~~-Vr~gA-~~Ldrllkdiv~es~ 108 (680)
.|..-+++.|+.+.++++..|+.++..|+.+ ++ ...||+++..|..-+.+..+. ||+++ +++.-+++|+..+.-
T Consensus 90 qVK~~il~tL~~~ep~~~s~Aaq~va~IA~~---ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl 166 (859)
T KOG1241|consen 90 QVKNNILRTLGSPEPRRPSSAAQCVAAIACI---ELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVL 166 (859)
T ss_pred HHHHHHHHHcCCCCCCccchHHHHHHHHHHh---hCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHH
Confidence 3556789999999999999999998777643 32 256999999999888888775 99999 999999998876632
Q ss_pred cccHhhhHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCCchhhhh--chHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 005727 109 QFSIEEFIPLLRERMNV--LNPYVRQFLVGWITVLDSVPDIDMLG--FLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (680)
Q Consensus 109 ~f~L~~fIP~L~e~i~~--~np~vR~~avswI~~L~sip~~~Li~--~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ 184 (680)
.-.-+.++-.+...++. .+..+|-.+..++..=....+.+|-. --+-|++..+..-.-++.+||.+|-.||.++..
T Consensus 167 ~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~ 246 (859)
T KOG1241|consen 167 EQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMS 246 (859)
T ss_pred HHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHH
Confidence 22234566666677764 45689998888887422222211110 111234445555555788899999888887764
Q ss_pred HhhcCCCCChHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHHHh-------cCcccc----c--------chHhHHHHHhh
Q 005727 185 EIKNSPSVDYGR-MAEILVQRAASPDEFTRLTAITWINEFVKL-------GGDQLV----P--------YYADILGAILP 244 (680)
Q Consensus 185 ei~~~~~~d~~~-II~iLl~~~~s~d~~irl~Al~WL~e~~~l-------~~~~l~----p--------fLp~LLp~LL~ 244 (680)
.--.....++.+ +..+-+..+.+++++|++.+++.++.+++- .++..- | -++.++|.|+.
T Consensus 247 LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~ 326 (859)
T KOG1241|consen 247 LYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLE 326 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHH
Confidence 221111122322 555556678899999999999955544321 111111 1 25589999999
Q ss_pred hhcCCch-------hHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh-ChhhHhh
Q 005727 245 CISDKEE-------KIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR-HRTEVLH 316 (680)
Q Consensus 245 ~Lsds~~-------eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~-~p~~~~~ 316 (680)
.|...++ .+..+|..|..-+.+.+++. =++.+++-+.+++.+++|.-|.+|...+|-+.++ ++....|
T Consensus 327 ~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~----Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~ 402 (859)
T KOG1241|consen 327 LLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD----IVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTP 402 (859)
T ss_pred HHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc----chhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhH
Confidence 8874321 36777777887777777642 2578999999999999999999999999977776 7888999
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-------ccchHHHHHHHHHHhhcccchh
Q 005727 317 FLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-------DLQHFRQLVVFLVHNFRVDNSL 371 (680)
Q Consensus 317 ~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~-------~~~~F~~fm~~LL~lf~~d~~l 371 (680)
..++.+|.++..++|++--|+..+-|++++|++ ++.+....+..+++-+.++.+.
T Consensus 403 iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~DePrv 464 (859)
T KOG1241|consen 403 IVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDEPRV 464 (859)
T ss_pred HHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhCchH
Confidence 999999999999999999999999999999993 6789999999999999888653
No 14
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.50 E-value=4.3e-12 Score=153.58 Aligned_cols=244 Identities=21% Similarity=0.156 Sum_probs=187.7
Q ss_pred hHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhcccccc
Q 005727 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFS 111 (680)
Q Consensus 33 Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~ 111 (680)
-++.++..|.|+|+.||..|+++|..+.. ++.++.|.+++.|+|+.||..| ..|.++.+...
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~------- 684 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP------- 684 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-------
Confidence 44678889999999999999999876531 4577888888999999999998 66665532111
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCC
Q 005727 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS 191 (680)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~ 191 (680)
-.+.|...+.+.+|.||..++.++..+..-. ...|.+.+.|++++||.+|..+|..+- .
T Consensus 685 ---~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~----~--- 743 (897)
T PRK13800 685 ---PAPALRDHLGSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVD----D--- 743 (897)
T ss_pred ---chHHHHHHhcCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhccc----C---
Confidence 1356677788899999999999998764211 124567899999999999988877641 1
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCC
Q 005727 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADP 271 (680)
Q Consensus 192 ~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~ 271 (680)
.+.|+..+.+++++||..+...|+.+-.- -+..++.+...+.|+++++|..|..+.+.+ .+
T Consensus 744 ------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~----g~- 804 (897)
T PRK13800 744 ------VESVAGAATDENREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAEL----GC- 804 (897)
T ss_pred ------cHHHHHHhcCCCHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhc----CC-
Confidence 13467788999999999999988755221 123377788889999999999998887632 11
Q ss_pred CCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005727 272 ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 272 ~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is 348 (680)
-+.+.+.+...+.+++|.+|.+|+..|+.+.. +.-++.|++.|+|++..||..+.+.|+++.
T Consensus 805 -----~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 805 -----PPDDVAAATAALRASAWQVRQGAARALAGAAA----------DVAVPALVEALTDPHLDVRKAAVLALTRWP 866 (897)
T ss_pred -----cchhHHHHHHHhcCCChHHHHHHHHHHHhccc----------cchHHHHHHHhcCCCHHHHHHHHHHHhccC
Confidence 13345668888999999999999999986542 345588999999999999999999999984
No 15
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=1.9e-11 Score=145.88 Aligned_cols=360 Identities=18% Similarity=0.223 Sum_probs=258.3
Q ss_pred hhhhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc-chhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHH
Q 005727 25 YSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG-DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKD 102 (680)
Q Consensus 25 ~~~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~-~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkd 102 (680)
-++.|+++|...++..+++..+|||.++|.|+..+...-.. .+....+++|.++++..+|-..+||++| .+.+.+.|=
T Consensus 1032 ~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl 1111 (1702)
T KOG0915|consen 1032 VVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKL 1111 (1702)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999887654322 3457789999999999999999999999 444444443
Q ss_pred Hhhc-------cccccHhhhHHHHHH-HhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHH-
Q 005727 103 IVTE-------SDQFSIEEFIPLLRE-RMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQ- 173 (680)
Q Consensus 103 iv~e-------s~~f~L~~fIP~L~e-~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~- 173 (680)
.|.- .+...++.++|.|.+ .+.+..+.+|.++++.+--+.+..+..+.+|+|++.+-|.+..+.-.+.|-.
T Consensus 1112 ~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnY 1191 (1702)
T KOG0915|consen 1112 CVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNY 1191 (1702)
T ss_pred HhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHH
Confidence 3332 134557778887764 4557889999999999999999999999999999999999988887666542
Q ss_pred -------HHHHHHHHHHHHhhc-CC----------CCC---hHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHhcCccc
Q 005727 174 -------QADSALWEFLQEIKN-SP----------SVD---YGRMAEILVQRAASPD-EFTRLTAITWINEFVKLGGDQL 231 (680)
Q Consensus 174 -------~a~~~L~~fL~ei~~-~~----------~~d---~~~II~iLl~~~~s~d-~~irl~Al~WL~e~~~l~~~~l 231 (680)
...++++..=.++.+ .| .+| +++|+|.+.+-++.+- -..|..+...|.-++.-.|.++
T Consensus 1192 ls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~em 1271 (1702)
T KOG0915|consen 1192 LSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEM 1271 (1702)
T ss_pred HHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhcccc
Confidence 223444444333322 12 234 4778888877776553 3356777777777777789999
Q ss_pred ccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHH-HHHhcCCCcHHHHHHHHHHHHHHHhhC
Q 005727 232 VPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSI-ATRQLSSEWEATRIEALHWISTLLNRH 310 (680)
Q Consensus 232 ~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~v-L~~~L~~~~~~tR~aaL~WL~~L~~~~ 310 (680)
.||..+++.++++...|-++.+|.....+.+.+.+.-.+.. ....+.. +..++.+....- -.+..-+..++...
T Consensus 1272 tP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq----~qKLie~~l~~~l~k~es~~-siscatis~Ian~s 1346 (1702)
T KOG0915|consen 1272 TPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQ----MQKLIETLLADLLGKDESLK-SISCATISNIANYS 1346 (1702)
T ss_pred CcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHH----HHHHHHHHHHHHhccCCCcc-chhHHHHHHHHHhh
Confidence 99999999999999999999999999999998877654311 3455554 444554433322 33344445599999
Q ss_pred hhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc----c-hHHHHHHHHHHhhcccc-hhHHhHHHHHHHHHH
Q 005727 311 RTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDL----Q-HFRQLVVFLVHNFRVDN-SLLEKRGALIIRRLC 384 (680)
Q Consensus 311 p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~~----~-~F~~fm~~LL~lf~~d~-~lLe~rg~~IIrqLc 384 (680)
++.+..|...++|.+.=...++..+....=-++|..+++++ + |...++..+.....++. =-+..-+.--+|..|
T Consensus 1347 ~e~Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a 1426 (1702)
T KOG0915|consen 1347 QEMLKNYASAILPLIFLAMHEEEKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIA 1426 (1702)
T ss_pred HHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHc
Confidence 99999999999998876666653333333334788887432 2 56666666666665553 222334455777777
Q ss_pred hhcCh
Q 005727 385 VLLDA 389 (680)
Q Consensus 385 ~~L~~ 389 (680)
..++.
T Consensus 1427 ~~~ss 1431 (1702)
T KOG0915|consen 1427 EGLSS 1431 (1702)
T ss_pred ccccc
Confidence 77655
No 16
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.39 E-value=6.2e-10 Score=126.65 Aligned_cols=263 Identities=20% Similarity=0.203 Sum_probs=177.6
Q ss_pred hhhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHh
Q 005727 26 SETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIV 104 (680)
Q Consensus 26 ~~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv 104 (680)
...-.+.+.++|.+++.|+++.||+.|+.+++.+.+...+.+... +++.+.+++.|+|+.|+.+| .++..+ + .-
T Consensus 108 ~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~---~~~~l~~lL~d~~~~V~~~a~~~l~~i-~-~~ 182 (526)
T PF01602_consen 108 TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE---LIPKLKQLLSDKDPSVVSAALSLLSEI-K-CN 182 (526)
T ss_dssp SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG---HHHHHHHHTTHSSHHHHHHHHHHHHHH-H-CT
T ss_pred ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH---HHHHHhhhccCCcchhHHHHHHHHHHH-c-cC
Confidence 356678888999999999999999999999999987655433221 68888888999999999988 444443 1 00
Q ss_pred hccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 005727 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (680)
Q Consensus 105 ~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ 184 (680)
.+....-+..+++.|...+.+.+|..+..++..+..+....+.+--. ..+++.+..++...++.|+-+|.+++-.+.
T Consensus 183 ~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~- 259 (526)
T PF01602_consen 183 DDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLS- 259 (526)
T ss_dssp HHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred cchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhh-
Confidence 00001124556666666668999999999999999877665543311 456666666777788888887766655332
Q ss_pred HhhcCCCC-ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHH
Q 005727 185 EIKNSPSV-DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEE 263 (680)
Q Consensus 185 ei~~~~~~-d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~ 263 (680)
+.. .+..+++.|...+.++++.+|..++.++..+....+..+. ..-..+.....+++..||..|.+....
T Consensus 260 -----~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~----~~~~~~~~l~~~~d~~Ir~~~l~lL~~ 330 (526)
T PF01602_consen 260 -----PSPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF----NQSLILFFLLYDDDPSIRKKALDLLYK 330 (526)
T ss_dssp -----SSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG----THHHHHHHHHCSSSHHHHHHHHHHHHH
T ss_pred -----cchHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh----hhhhhhheecCCCChhHHHHHHHHHhh
Confidence 122 3678999999999999999999999999888666532222 222223333337788899877665443
Q ss_pred HHHhccCCCCCCChHhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChh
Q 005727 264 LRAIKADPADGFDVGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRT 312 (680)
Q Consensus 264 Ll~~v~~~~~~ldl~~iL~vL~~~L~-~~~~~tR~aaL~WL~~L~~~~p~ 312 (680)
++. .-+...+++.|...+. ..+...|..++.-++.++++.+.
T Consensus 331 ---l~~----~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~ 373 (526)
T PF01602_consen 331 ---LAN----ESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP 373 (526)
T ss_dssp ---H------HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS
T ss_pred ---ccc----ccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc
Confidence 221 1235667777777773 33555777777777777777644
No 17
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.37 E-value=8.9e-11 Score=142.27 Aligned_cols=244 Identities=19% Similarity=0.185 Sum_probs=186.3
Q ss_pred hhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhcccc
Q 005727 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (680)
Q Consensus 31 ~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~ 109 (680)
+..++.+...+.|+|+.||.+|+++|..++.... --+.|...+.|+|+.||.+| ..|..+- .+
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~---------~~~~L~~~L~~~d~~VR~~A~~aL~~~~------~~- 714 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP---------PAPALRDHLGSPDPVVRAAALDVLRALR------AG- 714 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---------chHHHHHHhcCCCHHHHHHHHHHHHhhc------cC-
Confidence 5567889999999999999999999977743111 12456677788999999988 5555431 11
Q ss_pred ccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC
Q 005727 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (680)
Q Consensus 110 f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~ 189 (680)
+ .+.+...+.++++.+|..++..+..+... +.|...+.|++++||.++..+|..+-..
T Consensus 715 -~----~~~l~~~L~D~d~~VR~~Av~aL~~~~~~-------------~~l~~~l~D~~~~VR~~aa~aL~~~~~~---- 772 (897)
T PRK13800 715 -D----AALFAAALGDPDHRVRIEAVRALVSVDDV-------------ESVAGAATDENREVRIAVAKGLATLGAG---- 772 (897)
T ss_pred -C----HHHHHHHhcCCCHHHHHHHHHHHhcccCc-------------HHHHHHhcCCCHHHHHHHHHHHHHhccc----
Confidence 1 23566788999999999999999876432 2456789999999999999988866421
Q ss_pred CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhcc
Q 005727 190 PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA 269 (680)
Q Consensus 190 ~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~ 269 (680)
-...++.|...++++|+.||..|+.-|+.+ +.. +.+.+.+...+.|+++.+|..|.++.+.+ .
T Consensus 773 ----~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~---g~~------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~ 835 (897)
T PRK13800 773 ----GAPAGDAVRALTGDPDPLVRAAALAALAEL---GCP------PDDVAAATAALRASAWQVRQGAARALAGA----A 835 (897)
T ss_pred ----cchhHHHHHHHhcCCCHHHHHHHHHHHHhc---CCc------chhHHHHHHHhcCCChHHHHHHHHHHHhc----c
Confidence 112366777888999999999999988754 211 23446688899999999999998887631 1
Q ss_pred CCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005727 270 DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHA 345 (680)
Q Consensus 270 ~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa 345 (680)
-++.++.|...|.|+++.+|.+|+..|+.+ +.-+...+.|.+.|+|++++|+..+.+.|.
T Consensus 836 -------~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~---------~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 836 -------ADVAVPALVEALTDPHLDVRKAAVLALTRW---------PGDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred -------ccchHHHHHHHhcCCCHHHHHHHHHHHhcc---------CCCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 245678899999999999999999999886 123456778889999999999999998876
No 18
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.35 E-value=1.5e-09 Score=123.44 Aligned_cols=367 Identities=16% Similarity=0.158 Sum_probs=245.7
Q ss_pred hhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhh
Q 005727 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~ 105 (680)
+.-.....+.+++.+..+|...|+.+..++..+...-.+ .+.-+...+-|-+.++++.+|..| ..+.++..
T Consensus 37 G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~----~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~---- 108 (526)
T PF01602_consen 37 GYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE----LLILIINSLQKDLNSPNPYIRGLALRTLSNIRT---- 108 (526)
T ss_dssp T---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH----HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S----
T ss_pred CCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh----HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc----
Confidence 444567788999999999999999998777666542222 223466777777899999999888 66666532
Q ss_pred ccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHH-HHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 005727 106 ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPD-FLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (680)
Q Consensus 106 es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~-~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ 184 (680)
..-.+.++|.+.+.+.+++|.||+.|+.++..+....+. .++. +.+.+.+++.|+++.|+.+|..++..+
T Consensus 109 ---~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~----~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-- 179 (526)
T PF01602_consen 109 ---PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD----LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-- 179 (526)
T ss_dssp ---HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC----CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--
T ss_pred ---cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH----HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--
Confidence 112466899999999999999999999999988766543 2333 788899999999999999988887766
Q ss_pred HhhcCCCC---ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHH
Q 005727 185 EIKNSPSV---DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETN 261 (680)
Q Consensus 185 ei~~~~~~---d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n 261 (680)
+..+.. -++.+++.|...+..++|..+..++..+..+....+..-.. ..+++.+.+.+.+.++.|.-.|.++.
T Consensus 180 --~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i 255 (526)
T PF01602_consen 180 --KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLI 255 (526)
T ss_dssp --HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHH
Confidence 221111 24666666666668899999998888887543332222100 46888888888877777765555443
Q ss_pred HHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHH
Q 005727 262 EELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVL 341 (680)
Q Consensus 262 ~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al 341 (680)
- ...... .....+++.|...+.+.++.+|..+++++..+....+..+. +....+ .....|++..|+..++
T Consensus 256 ~---~l~~~~---~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~---~~l~~~~d~~Ir~~~l 325 (526)
T PF01602_consen 256 I---KLSPSP---ELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLIL---FFLLYDDDPSIRKKAL 325 (526)
T ss_dssp H---HHSSSH---HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHH---HHHHCSSSHHHHHHHH
T ss_pred H---Hhhcch---HHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhhh---heecCCCChhHHHHHH
Confidence 3 332210 12467888999999998899999999999999999977776 322222 2233488899999999
Q ss_pred HHHHHHhhccchHHHHHHHHHHhhc-ccchhHHhHHHHHHHHHHhhcCh--hhHHHHHHHhhcccCChhHHHHHHHHHHH
Q 005727 342 EVHACIAKDLQHFRQLVVFLVHNFR-VDNSLLEKRGALIIRRLCVLLDA--ERVYRELSTILEGEADLDFACTMVQALNL 418 (680)
Q Consensus 342 ~lLa~Is~~~~~F~~fm~~LL~lf~-~d~~lLe~rg~~IIrqLc~~L~~--e~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~ 418 (680)
++|..++ ++...+.++..|++.+. .+..-.....-.-|+.+|...+. +.....+-+++....+. .....++.+..
T Consensus 326 ~lL~~l~-~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~-~~~~~~~~i~~ 403 (526)
T PF01602_consen 326 DLLYKLA-NESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDY-VSNEIINVIRD 403 (526)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGG-CHCHHHHHHHH
T ss_pred HHHhhcc-cccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhcccc-ccchHHHHHHH
Confidence 9999999 46788889999999983 32222333333455556655543 45555666665543332 22333444444
Q ss_pred HHhchHHH
Q 005727 419 ILLTSSEL 426 (680)
Q Consensus 419 iLLTa~EL 426 (680)
++-..+++
T Consensus 404 ll~~~~~~ 411 (526)
T PF01602_consen 404 LLSNNPEL 411 (526)
T ss_dssp HHHHSTTT
T ss_pred HhhcChhh
Confidence 44333333
No 19
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.34 E-value=2.5e-10 Score=131.25 Aligned_cols=291 Identities=18% Similarity=0.227 Sum_probs=207.4
Q ss_pred hhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc-chhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHh
Q 005727 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG-DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIV 104 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~-~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv 104 (680)
..|++.|...+ +.+++.+|--..++.++.+-.+- ...++...||+.|++-+...+..+|+-. ++|.+++-
T Consensus 890 ~~yLpfil~qi-----~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l--- 961 (1233)
T KOG1824|consen 890 PKYLPFILEQI-----ESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVL--- 961 (1233)
T ss_pred HhHHHHHHHHH-----hcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHh---
Confidence 44444444444 44444444444444444332222 2236678888888888887877788876 77777743
Q ss_pred hccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 005727 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (680)
Q Consensus 105 ~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ 184 (680)
+.-+.++|.|..++.++.|.+|..+++.+....+--+..+-+++-.++..-.+++.||+.+||+.|-.+++.+.
T Consensus 962 -----~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaa- 1035 (1233)
T KOG1824|consen 962 -----IEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAA- 1035 (1233)
T ss_pred -----CChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH-
Confidence 34567999999999999999999999999976655444455566666667777999999999999866666554
Q ss_pred HhhcCCCC--C-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHH
Q 005727 185 EIKNSPSV--D-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETN 261 (680)
Q Consensus 185 ei~~~~~~--d-~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n 261 (680)
.++|.. | ++.++|.+.+...-..+.||. +++|| | +.-.|+.-++|++|-+|.
T Consensus 1036 --hNKpslIrDllpeLLp~Ly~eTkvrkelIre---------VeMGP-----F---------KH~VDdgLd~RKaaFEcm 1090 (1233)
T KOG1824|consen 1036 --HNKPSLIRDLLPELLPLLYSETKVRKELIRE---------VEMGP-----F---------KHTVDDGLDLRKAAFECM 1090 (1233)
T ss_pred --ccCHhHHHHHHHHHHHHHHHhhhhhHhhhhh---------hcccC-----c---------cccccchHHHHHHHHHHH
Confidence 454432 2 456666666555433344443 34454 3 467788999999999999
Q ss_pred HHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcC-----------
Q 005727 262 EELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS----------- 330 (680)
Q Consensus 262 ~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~Ls----------- 330 (680)
-.+++.+. +.+|.-+.++++...|.|. ...|+-+...+-.++..||..+..-++.++..|=++++
T Consensus 1091 ytLLdscl---d~~dit~Fl~~~~~GL~Dh-ydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr~t~~~k~k~~svKqE 1166 (1233)
T KOG1824|consen 1091 YTLLDSCL---DRLDITEFLNHVEDGLEDH-YDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLRKTCTLKVKANSVKQE 1166 (1233)
T ss_pred HHHHHhhh---hhccHHHHHHHHHhhcchh-hHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhhcccccchHhHh
Confidence 98888765 3677889999999999875 77999999999999999999999999999999988876
Q ss_pred -CCCHHHHHHHHHHHHHHh-----hccchHHHHHHH
Q 005727 331 -DPSDEVVLLVLEVHACIA-----KDLQHFRQLVVF 360 (680)
Q Consensus 331 -D~s~eV~~~al~lLa~Is-----~~~~~F~~fm~~ 360 (680)
|..++.++.|+++++.+. +..+.|..|+..
T Consensus 1167 ~ek~~eLkRSAlRav~~L~~ip~v~~np~~~df~sq 1202 (1233)
T KOG1824|consen 1167 FEKQDELKRSALRAVAALLTIPEVEKNPQFSDFESQ 1202 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccChHHHHHHHH
Confidence 455677888888777664 234445555444
No 20
>PRK09687 putative lyase; Provisional
Probab=99.31 E-value=8.1e-10 Score=116.70 Aligned_cols=239 Identities=17% Similarity=0.142 Sum_probs=181.7
Q ss_pred HHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhch
Q 005727 75 FDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL 153 (680)
Q Consensus 75 fd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~L 153 (680)
.+.|..++.|++..||..| ..|..+ . -+...+.+...+.+.|+.+|..++..++.+..-... .
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~----~-------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~ 88 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLR----G-------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----Q 88 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhc----C-------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----h
Confidence 4456666799999999988 554432 1 133567777778899999999999999987542221 4
Q ss_pred HHHHHHHHHh-cCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccc
Q 005727 154 PDFLDGLFNM-LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV 232 (680)
Q Consensus 154 p~~L~~Lf~l-LsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~ 232 (680)
+..++.|..+ +.|++++||..|..+|+.+...- .......++.+.....++++.||..|+..++.+ +
T Consensus 89 ~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~----~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~---~----- 156 (280)
T PRK09687 89 DNVFNILNNLALEDKSACVRASAINATGHRCKKN----PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVI---N----- 156 (280)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc----cccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc---C-----
Confidence 5667777766 79999999999999998874211 112456778888888999999999998888632 2
Q ss_pred cchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh
Q 005727 233 PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT 312 (680)
Q Consensus 233 pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~ 312 (680)
-+..++.|++.+.|+++++|..|..+.+.+ ..+-+.+++.|...+.++++.+|.+|+..|+.+..
T Consensus 157 --~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~---------~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~---- 221 (280)
T PRK09687 157 --DEAAIPLLINLLKDPNGDVRNWAAFALNSN---------KYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKD---- 221 (280)
T ss_pred --CHHHHHHHHHHhcCCCHHHHHHHHHHHhcC---------CCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCC----
Confidence 267899999999999999999999988743 11236788999999999999999999999988543
Q ss_pred hHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhc
Q 005727 313 EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFR 366 (680)
Q Consensus 313 ~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~~~~F~~fm~~LL~lf~ 366 (680)
+..+|.|++.|.|+. ++..+.+.|++|.. +-.-+.+..+++.+.
T Consensus 222 ------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~--~~a~p~L~~l~~~~~ 265 (280)
T PRK09687 222 ------KRVLSVLIKELKKGT--VGDLIIEAAGELGD--KTLLPVLDTLLYKFD 265 (280)
T ss_pred ------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC--HhHHHHHHHHHhhCC
Confidence 368899999999976 67789999999985 334555555555444
No 21
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.31 E-value=8e-08 Score=111.13 Aligned_cols=492 Identities=19% Similarity=0.203 Sum_probs=297.5
Q ss_pred hhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCCh--hHHHHHHHHHHHHHHHhhc
Q 005727 29 ILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDA--NVQSAAHLLDRLVKDIVTE 106 (680)
Q Consensus 29 yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~--~Vr~gA~~Ldrllkdiv~e 106 (680)
+-..|..-.+..++-+-.-||+-|+.++..++..+.+.. +.++.+.|.+.++.+.. .+|.--.+|+.++.....+
T Consensus 171 fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~l---y~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r 247 (1233)
T KOG1824|consen 171 FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDL---YVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHR 247 (1233)
T ss_pred hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcch
Confidence 444455556666677788999999999999887776654 57788888887776643 3333335566665544444
Q ss_pred cccccHhhhHHHHHHHh---cCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcC-CCC--------------
Q 005727 107 SDQFSIEEFIPLLRERM---NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLS-DSS-------------- 168 (680)
Q Consensus 107 s~~f~L~~fIP~L~e~i---~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLs-D~~-------------- 168 (680)
-+ -.++..+|.+.... ...+.+.|++.++.++.|....+.++.+|.|+++.-+.+.++ |||
T Consensus 248 ~~-~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ 326 (1233)
T KOG1824|consen 248 FG-SHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFL 326 (1233)
T ss_pred hh-cccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhh
Confidence 33 35888999999998 567789999999999999999999999999999998875442 221
Q ss_pred -------------------hhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHHhcC
Q 005727 169 -------------------HEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAIT-WINEFVKLGG 228 (680)
Q Consensus 169 -------------------~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~-WL~e~~~l~~ 228 (680)
=.||++|.+|+..++..=.+.-..-++.+-|.++.+.+..+|.|+....+ .+.-+-+.++
T Consensus 327 ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~ 406 (1233)
T KOG1824|consen 327 EDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRP 406 (1233)
T ss_pred hccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC
Confidence 13999999999888753221100124778889999999989989887776 3333333321
Q ss_pred ----------------c----ccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhc
Q 005727 229 ----------------D----QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQL 288 (680)
Q Consensus 229 ----------------~----~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L 288 (680)
. -+..-.|.|+.+|-+.|.+..-..|..+-....++.....+ +-+-..+.+++.+.-.|
T Consensus 407 ~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~-~l~~~~~slvpgI~~~l 485 (1233)
T KOG1824|consen 407 VIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPG-ALAQHIPSLVPGIIYSL 485 (1233)
T ss_pred CcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcc-hhhhcccccchhhhhhc
Confidence 0 11222444555555555522222333333333333332221 11223567788888888
Q ss_pred CCC--cHHHHHHHHHHHH-HHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh------------hccch
Q 005727 289 SSE--WEATRIEALHWIS-TLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA------------KDLQH 353 (680)
Q Consensus 289 ~~~--~~~tR~aaL~WL~-~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is------------~~~~~ 353 (680)
.|. ....|+.+|-.+. ++..+-|+.+-||.+.+.|.+..+..|+=..|-..|+-+..+++ +..+|
T Consensus 486 ~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~ 565 (1233)
T KOG1824|consen 486 NDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPY 565 (1233)
T ss_pred CCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChh
Confidence 643 3446888998776 55555677788999999999999999999988888887777766 23678
Q ss_pred HHHHHHHHHHhhcccchhHH--hHH----HHHHHHHHhhcCh--hhHHHHHHHhhcccCChhHHHHHHHHHHHHHhc---
Q 005727 354 FRQLVVFLVHNFRVDNSLLE--KRG----ALIIRRLCVLLDA--ERVYRELSTILEGEADLDFACTMVQALNLILLT--- 422 (680)
Q Consensus 354 F~~fm~~LL~lf~~d~~lLe--~rg----~~IIrqLc~~L~~--e~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLT--- 422 (680)
+.++....++++.....-+| +|+ ..||-.+...++. .++...|.+-+.+|- .+- ..|..|+.|-..
T Consensus 566 v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~nEi-TRl--~AvkAlt~Ia~S~l~ 642 (1233)
T KOG1824|consen 566 VKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGNEI-TRL--TAVKALTLIAMSPLD 642 (1233)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhchh-HHH--HHHHHHHHHHhccce
Confidence 99999999998865421112 222 2255566655555 244444444443321 111 223333333211
Q ss_pred ---h-------HHH-HHHHHHHhhccCCcchHHHHHHHHHHhccChhHHHHHHHHhh-----------hhHHHHHHHHHH
Q 005727 423 ---S-------SEL-SELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQ-----------TYHHASAVIQSL 480 (680)
Q Consensus 423 ---a-------~EL-~~lR~~L~~~l~~~~~~~lF~~L~~~w~~n~v~~~slcll~~-----------~Y~~a~~ll~~~ 480 (680)
+ +|+ ..+|+.-|. + .-.......+|-+...-+-.+.+-=|+|.+ .-+.|..++...
T Consensus 643 i~l~~~l~~il~~l~~flrK~~r~-l-r~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl 720 (1233)
T KOG1824|consen 643 IDLSPVLTEILPELASFLRKNQRA-L-RLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLTTL 720 (1233)
T ss_pred eehhhhHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 1 344 333544443 1 112233334444444333333333333332 445555666666
Q ss_pred hhcCcchhhHHh---HHHHHHhhccchh-------HHHHHHhcCCCCCchH-HHHHHHHHh
Q 005727 481 VEEDLNVKFLVQ---LDKLIRLLETPIF-------AYLRLQLLEPGRYTWL-LKALYGLLM 530 (680)
Q Consensus 481 ~~~~~~~~~l~q---id~LVqLlEsPif-------~~lRlqLLe~~~~~~l-~k~l~gllm 530 (680)
.-.-.+.-..+. +|.++.|+-||.. +-.=.|.+-..+.|.+ |-.|..++|
T Consensus 721 ~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt 781 (1233)
T KOG1824|consen 721 AIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLT 781 (1233)
T ss_pred HhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHc
Confidence 555444444443 9999999999975 2223344444445554 555555554
No 22
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1.8e-08 Score=114.47 Aligned_cols=294 Identities=17% Similarity=0.160 Sum_probs=213.0
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC
Q 005727 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (680)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~-~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~ 190 (680)
++..+|.+.+.|..+|++-|..++-..+.+..-|. .-+.++.++-++++.++++|++--||..++-++++..+.+....
T Consensus 362 v~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~ 441 (859)
T KOG1241|consen 362 VPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAI 441 (859)
T ss_pred hhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhc
Confidence 46778888889999999999999888886655554 55788999999999999999999999888888998887776421
Q ss_pred ---------------------------------------------------CCChHHHHHHHHHhcCCCC---HHHHHHH
Q 005727 191 ---------------------------------------------------SVDYGRMAEILVQRAASPD---EFTRLTA 216 (680)
Q Consensus 191 ---------------------------------------------------~~d~~~II~iLl~~~~s~d---~~irl~A 216 (680)
.+.|+.||.-|+.-+...| ...|..|
T Consensus 442 ~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AA 521 (859)
T KOG1241|consen 442 INQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAA 521 (859)
T ss_pred ccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHH
Confidence 1236778888877665433 4478888
Q ss_pred HHHHHHHHHhcCcccccchHhHHHHHhh----hhc-----CCc----hhHHHHHHHHHHHHHHhccCCCCCCChHhHHHH
Q 005727 217 ITWINEFVKLGGDQLVPYYADILGAILP----CIS-----DKE----EKIRVVARETNEELRAIKADPADGFDVGPILSI 283 (680)
Q Consensus 217 l~WL~e~~~l~~~~l~pfLp~LLp~LL~----~Ls-----ds~----~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~v 283 (680)
-+.+.++++.++.+..|-.-++.+.++. +|+ +++ .++...-+.+.+...+.+.. ...-+-+.+++.
T Consensus 522 YeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~-~~~~~~d~iM~l 600 (859)
T KOG1241|consen 522 YEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGS-DIREVSDQIMGL 600 (859)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccc-cchhHHHHHHHH
Confidence 9999999999998888777777777766 333 111 12222222233333333322 111234688888
Q ss_pred HHHhcCC-CcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHhh-----ccchHHH
Q 005727 284 ATRQLSS-EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS-DEVVLLVLEVHACIAK-----DLQHFRQ 356 (680)
Q Consensus 284 L~~~L~~-~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s-~eV~~~al~lLa~Is~-----~~~~F~~ 356 (680)
+.+.+.+ .+..+-+.|+..++.+++..+.++..|.+.+.|+|...|+.-. -.|-..+..+.++++. --+|=+.
T Consensus 601 flri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~ 680 (859)
T KOG1241|consen 601 FLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDE 680 (859)
T ss_pred HHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 8888877 4455789999999999999999999999999999999996654 5666688899999993 1356677
Q ss_pred HHHHHHHhhcccchhHHhHHHHHHHHHHhhcChhhHHHHHHHh-hcccCCh-hHHHHHHHHHHHHH
Q 005727 357 LVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTI-LEGEADL-DFACTMVQALNLIL 420 (680)
Q Consensus 357 fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~e~Iy~~La~i-L~~~~Dl-~F~~~mVq~Ln~iL 420 (680)
+|..|++.+.+.+- .| .+.| .|...|++| |.-+.|+ +++++.+.+|..+-
T Consensus 681 ~mt~Lvq~Lss~~~---hR----------~vKP-~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as 732 (859)
T KOG1241|consen 681 LMTVLVQCLSSPNL---HR----------NVKP-AILSVFGDIALAIGADFEPYLEMVMPLLQQAS 732 (859)
T ss_pred HHHHHHHHccCccc---cc----------cccc-hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 89999988877633 12 1222 477777777 3334554 66777777887776
No 23
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.19 E-value=1.5e-08 Score=114.42 Aligned_cols=370 Identities=15% Similarity=0.201 Sum_probs=244.7
Q ss_pred hhhhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHh
Q 005727 25 YSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIV 104 (680)
Q Consensus 25 ~~~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkdiv 104 (680)
.+-+|+..++.-|=.++.|....||--++.++..+++.+..--...|++||..|.+.+...- +..|.+++|.+.
T Consensus 546 svlphl~~lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hr------gk~laafLkAig 619 (1172)
T KOG0213|consen 546 SVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHR------GKELAAFLKAIG 619 (1172)
T ss_pred hhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHcc------ChHHHHHHHHHh
Confidence 44688999999999999999999999999999999988776555678999999998765432 245667777654
Q ss_pred h-------ccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhh----hchHHHHHHHH--HhcCCC--Ch
Q 005727 105 T-------ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDML----GFLPDFLDGLF--NMLSDS--SH 169 (680)
Q Consensus 105 ~-------es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li----~~Lp~~L~~Lf--~lLsD~--~~ 169 (680)
- +.+.+.....+-.+..-+++++.+.++..+..+...++.-+.+=. ..+|.|+..-. ++..|- .+
T Consensus 620 yliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~yk 699 (1172)
T KOG0213|consen 620 YLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYK 699 (1172)
T ss_pred hccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchh
Confidence 3 122233344566777778899999999998888888776554422 34556555443 344441 11
Q ss_pred hHHH---------HHHHHHHHHHHHhhcCCC-------------------CCh-----HHHHHHHHHhcCCCCHHHHHHH
Q 005727 170 EIRQ---------QADSALWEFLQEIKNSPS-------------------VDY-----GRMAEILVQRAASPDEFTRLTA 216 (680)
Q Consensus 170 dVR~---------~a~~~L~~fL~ei~~~~~-------------------~d~-----~~II~iLl~~~~s~d~~irl~A 216 (680)
.+-. .+....++.+.+.+..+. .|+ +.++.-++...++++.+.. ..
T Consensus 700 qlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vm 778 (1172)
T KOG0213|consen 700 QLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VM 778 (1172)
T ss_pred hHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hh
Confidence 1111 111222233333322211 111 2233333333333322211 11
Q ss_pred HHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHH
Q 005727 217 ITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATR 296 (680)
Q Consensus 217 l~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR 296 (680)
+.-++..+...+..+.||+|.|...+|..|....+.+|..|.+..+.+...+...++.--++.+=.+|-+.+..+-.++-
T Consensus 779 l~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvL 858 (1172)
T KOG0213|consen 779 LLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVL 858 (1172)
T ss_pred hhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHH
Confidence 22233344445667899999999999999999999999999998887766655444322233444478888888888888
Q ss_pred HHHHHHHHHHHhhC-hhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchH------HHHHHHHHHhhcccc
Q 005727 297 IEALHWISTLLNRH-RTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHF------RQLVVFLVHNFRVDN 369 (680)
Q Consensus 297 ~aaL~WL~~L~~~~-p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~~~~F------~~fm~~LL~lf~~d~ 369 (680)
-..|..+..+.... +.+|.|-..+++|.|.+.|+.....|...+..+++.|+.+.+.| -.+-=+|+++++..+
T Consensus 859 gsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahk 938 (1172)
T KOG0213|consen 859 GSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHK 938 (1172)
T ss_pred HHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 88888888888765 56789999999999999999999999999999999999543322 335557888887776
Q ss_pred hhHHhHHHHHHHHHHhhcChhhHHHHHHHhhc
Q 005727 370 SLLEKRGALIIRRLCVLLDAERVYRELSTILE 401 (680)
Q Consensus 370 ~lLe~rg~~IIrqLc~~L~~e~Iy~~La~iL~ 401 (680)
|-..+.+.--+--+.+-+||+.|.-+|-+=|+
T Consensus 939 K~iRRaa~nTfG~IakaIGPqdVLatLlnnLk 970 (1172)
T KOG0213|consen 939 KEIRRAAVNTFGYIAKAIGPQDVLATLLNNLK 970 (1172)
T ss_pred HHHHHHHHhhhhHHHHhcCHHHHHHHHHhcch
Confidence 64443333345555666677666555554443
No 24
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.16 E-value=2.8e-07 Score=102.02 Aligned_cols=313 Identities=14% Similarity=0.142 Sum_probs=208.0
Q ss_pred hhhhhhhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCCh-hHHHHH-HHHHHH
Q 005727 22 LFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDA-NVQSAA-HLLDRL 99 (680)
Q Consensus 22 ~~~~~~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~-~Vr~gA-~~Ldrl 99 (680)
+.++++.| +..-.++.+..+.+|.-..|+..+..|+..--.. ..|++++..+.+.+.|.+| ++|..+ ..+...
T Consensus 87 ~~~E~k~q---vK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~--~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ 161 (858)
T COG5215 87 MRHESKEQ---VKGMALRALKSPEPRFCTMAAQLLAAIARMELPN--SLWPGLMEEMVRNVGDEQPVSGKCESLGICGYH 161 (858)
T ss_pred CCHHHHHH---HHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCcc--ccchHHHHHHHHhccccCchHhHHHHHHHHHHH
Confidence 44454444 4456788999999999999999998887543222 4589999999988888876 566655 444443
Q ss_pred HH-----HHhhccccccHhhhHHHHHHHh-cCCCHHHHHHHHHHHHH-hhcCCchhh--hhchHHHHHHHHHhcCCCChh
Q 005727 100 VK-----DIVTESDQFSIEEFIPLLRERM-NVLNPYVRQFLVGWITV-LDSVPDIDM--LGFLPDFLDGLFNMLSDSSHE 170 (680)
Q Consensus 100 lk-----div~es~~f~L~~fIP~L~e~i-~~~np~vR~~avswI~~-L~sip~~~L--i~~Lp~~L~~Lf~lLsD~~~d 170 (680)
++ |++..++. -++....-.. +..+..+|..+++++.. +.-+-+ .+ -..-.-|++..+..-.-++.+
T Consensus 162 ces~~Pe~li~~sN~----il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~-nf~~E~erNy~mqvvceatq~~d~e 236 (858)
T COG5215 162 CESEAPEDLIQMSNV----ILFAIVMGALKNETTSAVRLAALKALMDSLMFVQG-NFCYEEERNYFMQVVCEATQGNDEE 236 (858)
T ss_pred hhccCHHHHHHHhhH----HHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHH-hhcchhhhchhheeeehhccCCcHH
Confidence 33 12211110 0111111111 24567899999988874 222211 00 111223455555556668889
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCChHHHHH-HHHHhcCCCCHHHHHHHHHHHHHHHH--hcCcccccc-------------
Q 005727 171 IRQQADSALWEFLQEIKNSPSVDYGRMAE-ILVQRAASPDEFTRLTAITWINEFVK--LGGDQLVPY------------- 234 (680)
Q Consensus 171 VR~~a~~~L~~fL~ei~~~~~~d~~~II~-iLl~~~~s~d~~irl~Al~WL~e~~~--l~~~~l~pf------------- 234 (680)
+..+|--||.++..---.-...++++.+- +....+++++++|+..|++..+.+++ +.++--..|
T Consensus 237 ~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~ 316 (858)
T COG5215 237 LQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFAR 316 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHH
Confidence 99999888877764221111123333332 33456789999999999996655543 222222333
Q ss_pred --hHhHHHHHhhhhcCCch-------hHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 005727 235 --YADILGAILPCISDKEE-------KIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWIST 305 (680)
Q Consensus 235 --Lp~LLp~LL~~Lsds~~-------eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~ 305 (680)
..+++|.+|+.|...++ .+..+|..|.+.+.+.+++ .-+.+++..+.+.+.+++|..|++|...+|-
T Consensus 317 aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd----~i~~pVl~FvEqni~~~~w~nreaavmAfGS 392 (858)
T COG5215 317 AAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD----KIMRPVLGFVEQNIRSESWANREAAVMAFGS 392 (858)
T ss_pred HHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh----HhHHHHHHHHHHhccCchhhhHHHHHHHhhh
Confidence 34688999988864322 3667788888777777654 2256788899999999999999999999997
Q ss_pred HHhh-ChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005727 306 LLNR-HRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 306 L~~~-~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is 348 (680)
+.++ |..-..++.++.+|.++..++|+.--|.+.+-|.+++|+
T Consensus 393 vm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~ia 436 (858)
T COG5215 393 VMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIA 436 (858)
T ss_pred hhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHH
Confidence 7766 666678999999999999999999999999999999988
No 25
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.15 E-value=4.1e-08 Score=110.91 Aligned_cols=390 Identities=16% Similarity=0.174 Sum_probs=253.9
Q ss_pred hhhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHh
Q 005727 26 SETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIV 104 (680)
Q Consensus 26 ~~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv 104 (680)
+.+|..+|+=-|-..+-|+|...|-..-|.+.|++|.+.-. -.+...--=+++.|+=|||.. .+..-.+
T Consensus 435 vrpYVhkILvViepllided~yar~egreIisnLakaaGla------~mistmrpDidn~deYVRnttarafavva---- 504 (1172)
T KOG0213|consen 435 VRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLA------TMISTMRPDIDNKDEYVRNTTARAFAVVA---- 504 (1172)
T ss_pred chhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhhhH------HHHHhhcCCcccccHHHHHHHHHHHHHHH----
Confidence 35677777666667788999999999999999999877611 112222222567788899876 3333322
Q ss_pred hccccccHhhhHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 005727 105 TESDQFSIEEFIPLLRERMNVL-NPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (680)
Q Consensus 105 ~es~~f~L~~fIP~L~e~i~~~-np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL 183 (680)
+++.++.+.|.|...-.+. +++.|...+.++..+.-..+...++|+-.+++.+-..+.|.+..||..++.++..+.
T Consensus 505 ---salgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~gl~De~qkVR~itAlalsala 581 (1172)
T KOG0213|consen 505 ---SALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHGLKDEQQKVRTITALALSALA 581 (1172)
T ss_pred ---HHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHhhcccchhhhhHHHHHHHHHH
Confidence 2566888999999888886 899999999999999998998999999999999999999999999988888877665
Q ss_pred HHhhcC-----------------------------------C--C-----CChHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005727 184 QEIKNS-----------------------------------P--S-----VDYGRMAEILVQRAASPDEFTRLTAITWIN 221 (680)
Q Consensus 184 ~ei~~~-----------------------------------~--~-----~d~~~II~iLl~~~~s~d~~irl~Al~WL~ 221 (680)
+...-- + + .+-.+++-+++.-.++||++.+...+.-+.
T Consensus 582 eaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~ 661 (1172)
T KOG0213|consen 582 EAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVK 661 (1172)
T ss_pred HhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHH
Confidence 533210 0 0 112456778888889999998888887777
Q ss_pred HHHHhcCcccccchHhHHHHHhh---------------------------------------hhcCCchhHHHHHHHHHH
Q 005727 222 EFVKLGGDQLVPYYADILGAILP---------------------------------------CISDKEEKIRVVARETNE 262 (680)
Q Consensus 222 e~~~l~~~~l~pfLp~LLp~LL~---------------------------------------~Lsds~~eIR~~A~~~n~ 262 (680)
..+...|.+=.=--.+++|.++. -+.|+.+.-|.++.++..
T Consensus 662 qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ 741 (1172)
T KOG0213|consen 662 QCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVS 741 (1172)
T ss_pred HHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHH
Confidence 76655432110001233333333 333333444444444444
Q ss_pred HHHHhccCCCCCCC---hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHH
Q 005727 263 ELRAIKADPADGFD---VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLL 339 (680)
Q Consensus 263 ~Ll~~v~~~~~~ld---l~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~ 339 (680)
..+..++ ..++| -+.++..+.-.|.++..... --+.-++.+.......+.||++.+..+++..|+.+++.||+.
T Consensus 742 ri~~~lg--~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqq 818 (1172)
T KOG0213|consen 742 RIVGRLG--AADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQ 818 (1172)
T ss_pred HHHhccc--cccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHH
Confidence 3333322 12222 12333333333433222211 234567777777778889999999999999999999999999
Q ss_pred HHHHHHHHhh----c--cchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcCh----------hhHHHHHHHhhccc
Q 005727 340 VLEVHACIAK----D--LQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA----------ERVYRELSTILEGE 403 (680)
Q Consensus 340 al~lLa~Is~----~--~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~----------e~Iy~~La~iL~~~ 403 (680)
+..++++|+. + ++.....=..|.+.+-.+-+ |. -.+|+.-+|...|. ..|.+.+.-||.+-
T Consensus 819 aadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeyp--Ev-LgsILgAikaI~nvigm~km~pPi~dllPrltPILknr 895 (1172)
T KOG0213|consen 819 AADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYP--EV-LGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR 895 (1172)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccH--HH-HHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhh
Confidence 9999998872 1 22222222223333332222 22 24566666665544 45666777777442
Q ss_pred CChhHHHHHHHHHHHHHhchHHHHHHHHHHhh
Q 005727 404 ADLDFACTMVQALNLILLTSSELSELRDLLKK 435 (680)
Q Consensus 404 ~Dl~F~~~mVq~Ln~iLLTa~EL~~lR~~L~~ 435 (680)
.-.....+|..+..|--.++|...-|.-.|-
T Consensus 896 -heKVqen~IdLvg~IadrgpE~v~aREWMRI 926 (1172)
T KOG0213|consen 896 -HEKVQENCIDLVGTIADRGPEYVSAREWMRI 926 (1172)
T ss_pred -HHHHHHHHHHHHHHHHhcCcccCCHHHHHHH
Confidence 2255668899999999888888777777765
No 26
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=99.13 E-value=1.5e-10 Score=103.11 Aligned_cols=95 Identities=16% Similarity=0.261 Sum_probs=83.4
Q ss_pred hHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCC
Q 005727 88 NVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSD 166 (680)
Q Consensus 88 ~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD 166 (680)
|.|+|+ .+|......+.... ...++.++|+++.++.|++++||++++++++++.++.+.++++|+++++++|+++.+|
T Consensus 1 n~R~ggli~Laa~ai~l~~~~-~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 1 NYRKGGLIGLAAVAIALGKDI-SKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSAD 79 (97)
T ss_pred CchhHHHHHHHHHHHHchHhH-HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 457888 77777766665553 3458999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHH
Q 005727 167 SSHEIRQQADSALWEFLQ 184 (680)
Q Consensus 167 ~~~dVR~~a~~~L~~fL~ 184 (680)
++++||.+| +.|+++++
T Consensus 80 ~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRLLK 96 (97)
T ss_pred CchhHHHHH-HHHHHHhc
Confidence 999999997 67888775
No 27
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.10 E-value=4.9e-08 Score=123.27 Aligned_cols=343 Identities=15% Similarity=0.124 Sum_probs=240.2
Q ss_pred HhhccCCCCHHHHHHHHHHHHHHHHhhccchh-hhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHH------HHhhccc
Q 005727 37 VLNSFSDQDSRVRYYACEALYNIAKVVRGDFI-IFFNQIFDALCKLSADSDANVQSAA-HLLDRLVK------DIVTESD 108 (680)
Q Consensus 37 VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il-~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllk------div~es~ 108 (680)
++.-+.-.+..+|..|+.++.++++.-.+... ..-....+.|.+++.+++..++..| ..+..+.+ ..+.+.|
T Consensus 409 LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaG 488 (2102)
T PLN03200 409 LVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAG 488 (2102)
T ss_pred hhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 33334445689999999999887643111111 0112356778888888888888888 66766553 1222334
Q ss_pred cccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHh
Q 005727 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (680)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~L--p~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei 186 (680)
.||.|.+.+.+.++.+|+-++-.|.++...++ +....+ ...++.|+++|.+.++++|+.|..+|..++..-
T Consensus 489 ------aIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~-qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~ 561 (2102)
T PLN03200 489 ------GIPPLVQLLETGSQKAKEDSATVLWNLCCHSE-DIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTA 561 (2102)
T ss_pred ------CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcH-HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc
Confidence 59999999999999999999999999987432 333333 256778888999999999999999998887522
Q ss_pred hcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcc-ccc---chHhHHHHHhhhhcCCchhHHHHHHHHHH
Q 005727 187 KNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ-LVP---YYADILGAILPCISDKEEKIRVVARETNE 262 (680)
Q Consensus 187 ~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~-l~p---fLp~LLp~LL~~Lsds~~eIR~~A~~~n~ 262 (680)
+ ...++.++.-+.+.++.++..++.-++.++.+.... ... --.+.+|.|...+.++++++++.|..+..
T Consensus 562 ------d-~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLs 634 (2102)
T PLN03200 562 ------D-AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLA 634 (2102)
T ss_pred ------c-hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1 234466666678888888888888887776654332 110 02367888899999999999999987766
Q ss_pred HHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhh-Hhhh-hHHHHHHHHHhcCCCCHHHHHHH
Q 005727 263 ELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTE-VLHF-LNDIFDTLLKALSDPSDEVVLLV 340 (680)
Q Consensus 263 ~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~-~~~~-l~~l~p~LL~~LsD~s~eV~~~a 340 (680)
.+...-.+..+.+-....++.+...+.+.+..+|..+...|+.+.....++ .... -.+.+|.|++.|++++.+|+..+
T Consensus 635 nL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~A 714 (2102)
T PLN03200 635 DIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQA 714 (2102)
T ss_pred HHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHH
Confidence 443211110001112456778888888888888999998989888643322 2232 34589999999999999999999
Q ss_pred HHHHHHHhhcc---chH--HHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcChhhHH
Q 005727 341 LEVHACIAKDL---QHF--RQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVY 393 (680)
Q Consensus 341 l~lLa~Is~~~---~~F--~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~e~Iy 393 (680)
+..|+.+.++. .-+ ...+..|.+.++++..-.++-+...+.+||..-+.+.+.
T Consensus 715 l~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~ 772 (2102)
T PLN03200 715 VCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVL 772 (2102)
T ss_pred HHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHH
Confidence 99999999532 111 246788888888886655666778999999888765533
No 28
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.08 E-value=2e-08 Score=126.67 Aligned_cols=350 Identities=17% Similarity=0.127 Sum_probs=244.4
Q ss_pred hHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchh-hhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHH------HHh
Q 005727 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFI-IFFNQIFDALCKLSADSDANVQSAA-HLLDRLVK------DIV 104 (680)
Q Consensus 33 Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il-~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllk------div 104 (680)
.+|+++..|..++..+|+.|+.++.|+++....... ..=...++.|.+++..++..+|+.| .+|.++.. +++
T Consensus 447 gIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV 526 (2102)
T PLN03200 447 GVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACV 526 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 579999999999999999999999998753221110 0013467888888988899888887 77877653 333
Q ss_pred hccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhc--------------------------------
Q 005727 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF-------------------------------- 152 (680)
Q Consensus 105 ~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~-------------------------------- 152 (680)
.+.+ .+|.|.+.+.+.++.+|+.++..|..+....+.+.+..
T Consensus 527 ~~aG------AIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~ 600 (2102)
T PLN03200 527 ESAG------AVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDL 600 (2102)
T ss_pred HHCC------CHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHH
Confidence 3333 57888888888888888888888887754332211100
Q ss_pred ------hHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC-CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 005727 153 ------LPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP-SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVK 225 (680)
Q Consensus 153 ------Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~-~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~ 225 (680)
-+.-++.|.+++..+++++++.|+.+|..+...-+... .+-..+.++.++..+++.+.+++..|...|..+..
T Consensus 601 ~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~ 680 (2102)
T PLN03200 601 VREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSR 680 (2102)
T ss_pred HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 12346677788888888898888888877764111100 11235678999999999999999999988888775
Q ss_pred hcCccc-ccchH-hHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHH
Q 005727 226 LGGDQL-VPYYA-DILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWI 303 (680)
Q Consensus 226 l~~~~l-~pfLp-~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL 303 (680)
-+...= ..+.. ..+|.+++.+.+++.++++.|..+...+........ .+--...++.|.+.+++.+...|+.|...|
T Consensus 681 ~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~-ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL 759 (2102)
T PLN03200 681 SIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAA-EALAEDIILPLTRVLREGTLEGKRNAARAL 759 (2102)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHH-HHHhcCcHHHHHHHHHhCChHHHHHHHHHH
Confidence 333221 22233 478899999999999999999888776544321100 011134588999999999999999999999
Q ss_pred HHHHhhChhh-Hh-h--hhHHHHHHHHHhcCCCCHHHHHH--HHHHHHHHhh---ccch----HH------HHHHHHHHh
Q 005727 304 STLLNRHRTE-VL-H--FLNDIFDTLLKALSDPSDEVVLL--VLEVHACIAK---DLQH----FR------QLVVFLVHN 364 (680)
Q Consensus 304 ~~L~~~~p~~-~~-~--~l~~l~p~LL~~LsD~s~eV~~~--al~lLa~Is~---~~~~----F~------~fm~~LL~l 364 (680)
..+..+.|.+ .. . .-.+.+.+|+..|+-.+.+++.. ++++|+.++. +..| |- .=+..|.+.
T Consensus 760 ~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~ 839 (2102)
T PLN03200 760 AQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRC 839 (2102)
T ss_pred HHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHH
Confidence 9999998732 22 2 23467889999999887777664 8888888772 1111 11 135556666
Q ss_pred hcccchhHHhHHHHHHHHHHhhcCh
Q 005727 365 FRVDNSLLEKRGALIIRRLCVLLDA 389 (680)
Q Consensus 365 f~~d~~lLe~rg~~IIrqLc~~L~~ 389 (680)
+....+.+++++--|+-+||.--+.
T Consensus 840 l~~~~p~~~~kai~il~~~~~~~~~ 864 (2102)
T PLN03200 840 LAEGHPLVQDKAIEILSRLCRDQPV 864 (2102)
T ss_pred HHcCChHHHHHHHHHHHHHhccChh
Confidence 6777888888988899999986544
No 29
>PTZ00429 beta-adaptin; Provisional
Probab=99.04 E-value=5.1e-06 Score=98.27 Aligned_cols=217 Identities=16% Similarity=0.174 Sum_probs=138.6
Q ss_pred hHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhcccccc
Q 005727 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFS 111 (680)
Q Consensus 33 Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~ 111 (680)
.++.+.+-+.|+|+.||--|..+|..|- -. ...+.+.+.+-+++.|+++-||+.| -++.++.+--. +...
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~Ir---~~---~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p---elv~ 176 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCIR---VS---SVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM---QLFY 176 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCC---cH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc---cccc
Confidence 3588888899999999988877775541 12 2345677888888999999999988 66666544111 1111
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCC
Q 005727 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS 191 (680)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~ 191 (680)
-..|++.|.+.+.+.||.|...|+..+..+....+.. +......+..|+..+.+.++=-+-. .|+.+.+-.+ ..+
T Consensus 177 ~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~-l~l~~~~~~~Ll~~L~e~~EW~Qi~---IL~lL~~y~P-~~~ 251 (746)
T PTZ00429 177 QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK-IESSNEWVNRLVYHLPECNEWGQLY---ILELLAAQRP-SDK 251 (746)
T ss_pred ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh-hHHHHHHHHHHHHHhhcCChHHHHH---HHHHHHhcCC-CCc
Confidence 2347888999899999999999999998887654433 3445556666777777766444443 3333332111 112
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccccc-chHhHHHHHhhhhcCCchhHHHHHHHHHHHH
Q 005727 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKEEKIRVVARETNEEL 264 (680)
Q Consensus 192 ~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~p-fLp~LLp~LL~~Lsds~~eIR~~A~~~n~~L 264 (680)
.+...+++.+..++++.++.|...|+.-+-.+....+..+.. .+-++-+.++ .|..+++++|-++.+....+
T Consensus 252 ~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv-~L~ss~~eiqyvaLr~I~~i 324 (746)
T PTZ00429 252 ESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALL-TLSRRDAETQYIVCKNIHAL 324 (746)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHH-HhhCCCccHHHHHHHHHHHH
Confidence 346789999999999999988888877554433221112211 1222323333 34556788888877655433
No 30
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1.7e-07 Score=104.86 Aligned_cols=392 Identities=16% Similarity=0.171 Sum_probs=254.9
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc-ch-hhhHHHHHHHHHHhhc-CCChhHHHHH-HHHHHHHHHHhhcccc
Q 005727 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRG-DF-IIFFNQIFDALCKLSA-DSDANVQSAA-HLLDRLVKDIVTESDQ 109 (680)
Q Consensus 34 v~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~-~i-l~~f~eIfd~L~kL~a-D~d~~Vr~gA-~~Ldrllkdiv~es~~ 109 (680)
.+..+..+...|..-+-+|.+++-.+-..-+. .+ ......+++.+...+. +..+.++-.| -+|..+.-.-......
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 45566666666666677777666554322111 11 1112356666666664 5556665555 6666654321111111
Q ss_pred ccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhh--chHHHHHHHHHhcCCCCh--hHHHHHHHHHHHHHHH
Q 005727 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG--FLPDFLDGLFNMLSDSSH--EIRQQADSALWEFLQE 185 (680)
Q Consensus 110 f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~--~Lp~~L~~Lf~lLsD~~~--dVR~~a~~~L~~fL~e 185 (680)
+.=..-+|.+...+++++..+|.-++-.++++..-++ ++-. .=...+++|..++..+++ .+|.++ -+|..|++.
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~-~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~t-W~LsNlcrg 225 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSP-DCRDYVLSCGALDPLLRLLNKSDKLSMLRNAT-WTLSNLCRG 225 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCCh-HHHHHHHhhcchHHHHHHhccccchHHHHHHH-HHHHHHHcC
Confidence 2223358889999999999999999999999876543 1211 123567888888988775 677776 577778763
Q ss_pred hhcCCCCC---hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHH
Q 005727 186 IKNSPSVD---YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNE 262 (680)
Q Consensus 186 i~~~~~~d---~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~ 262 (680)
- .|.+. +.+++|+|...+++.|++|..-|+..++. ++|...|.-.+
T Consensus 226 k--~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsy-----------------------Lsdg~ne~iq~------ 274 (514)
T KOG0166|consen 226 K--NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSY-----------------------LTDGSNEKIQM------ 274 (514)
T ss_pred C--CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----------------------HhcCChHHHHH------
Confidence 2 24443 57788888889999999988777765553 34332221111
Q ss_pred HHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhh-hhHHHHHHHHHhcC-CCCHHHHHHH
Q 005727 263 ELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH-FLNDIFDTLLKALS-DPSDEVVLLV 340 (680)
Q Consensus 263 ~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~-~l~~l~p~LL~~Ls-D~s~eV~~~a 340 (680)
+-+ ..+++.|...|.+.+..++..||+.+|.++.+.-..-.. ...+.+|.|...|+ .+.+.+++.|
T Consensus 275 -----vi~-------~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEA 342 (514)
T KOG0166|consen 275 -----VID-------AGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEA 342 (514)
T ss_pred -----HHH-------ccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHH
Confidence 111 247778888888888888999999999988887554333 23468899999998 5566788899
Q ss_pred HHHHHHHhhc-cchHH-----HHHHHHHHhhcccchhHHhHHHHHHHHHHhhcChhh--------HHHHHHHhhcccCCh
Q 005727 341 LEVHACIAKD-LQHFR-----QLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAER--------VYRELSTILEGEADL 406 (680)
Q Consensus 341 l~lLa~Is~~-~~~F~-----~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~e~--------Iy~~La~iL~~~~Dl 406 (680)
||+++.|..+ ..+-+ .+++.|+..+.+..--++.-+...|-++|..=+.+. |-+.|.+.| ...|.
T Consensus 343 cW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL-~~~D~ 421 (514)
T KOG0166|consen 343 CWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLL-TCPDV 421 (514)
T ss_pred HHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcc-cCCCh
Confidence 9999999953 32333 377888888877655455556889999988877754 445667777 56788
Q ss_pred hHHHHHHHHHHHHHhchHHHHHHH-HHHhhccCCcchHHHHHHHHHHhccChhHHHHHHHHhhhhHHHHHHHHHHhhc
Q 005727 407 DFACTMVQALNLILLTSSELSELR-DLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEE 483 (680)
Q Consensus 407 ~F~~~mVq~Ln~iLLTa~EL~~lR-~~L~~~l~~~~~~~lF~~L~~~w~~n~v~~~slcll~~~Y~~a~~ll~~~~~~ 483 (680)
+.+...-..|.+|+...+...+.+ +.+...++.-++.+.-..|- .|-.. .=|+.||.||.+|-.-
T Consensus 422 ~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ---~hen~---------~Iy~~A~~II~~yf~~ 487 (514)
T KOG0166|consen 422 KIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQ---SHENE---------EIYKKAYKIIDTYFSE 487 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhh---ccccH---------HHHHHHHHHHHHhcCC
Confidence 889999999999998877665433 33332222333444433332 23334 5699999999988543
No 31
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.00 E-value=6.9e-09 Score=105.68 Aligned_cols=192 Identities=21% Similarity=0.258 Sum_probs=133.9
Q ss_pred HHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccc--c--ccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCch
Q 005727 73 QIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD--Q--FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI 147 (680)
Q Consensus 73 eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~--~--f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~ 147 (680)
++...|.+--.|.|.+.|..| ..|.++++.-+.+.. . ..+..+++.+...+.+.+..+-..++..+..+....+.
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 344444444577778888777 667777665522211 1 11334456666778888889999999999999998888
Q ss_pred hhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCC-hHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 005727 148 DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD-YGRM-AEILVQRAASPDEFTRLTAITWINEFVK 225 (680)
Q Consensus 148 ~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d-~~~I-I~iLl~~~~s~d~~irl~Al~WL~e~~~ 225 (680)
.+-+|++.+++.|++.++|+++.||+.|..+|..+++. .. .+.+ .+.+...+.+.++.+|..++.|+..++.
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~------~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~ 160 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIES------CSYSPKILLEILSQGLKSKNPQVREECAEWLAIILE 160 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTT------S-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH------CCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999988863 33 3566 7888888999999999999999999987
Q ss_pred hcC---ccccc--chHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccC
Q 005727 226 LGG---DQLVP--YYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (680)
Q Consensus 226 l~~---~~l~p--fLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~ 270 (680)
..+ ..+-. +++.+++.+.+++.|.++++|+.|.++...+.+..++
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 161 KWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp T-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 766 44433 4699999999999999999999999999888776543
No 32
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.00 E-value=1.6e-08 Score=102.94 Aligned_cols=190 Identities=21% Similarity=0.259 Sum_probs=125.7
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-----chhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHh
Q 005727 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVP-----DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (680)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip-----~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei 186 (680)
++.+.+.+...-.+.|+..|.-++.-+..+..-. ..++..++.+++.++.+.+.|....|-+.|+.+
T Consensus 5 ~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~-------- 76 (228)
T PF12348_consen 5 FEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQL-------- 76 (228)
T ss_dssp -GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHH--------
T ss_pred HHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHH--------
Confidence 3455666656667889999999999888776543 123333444444555555555444444444444
Q ss_pred hcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHH
Q 005727 187 KNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRA 266 (680)
Q Consensus 187 ~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~ 266 (680)
+..+....+..+-||.+.++|.+++.++++...||+.|.++...+.+
T Consensus 77 ---------------------------------l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~ 123 (228)
T PF12348_consen 77 ---------------------------------LSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIE 123 (228)
T ss_dssp ---------------------------------HHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHT
T ss_pred ---------------------------------HHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHH
Confidence 44444455667899999999999999999999999999998886655
Q ss_pred hccCCCCCCChHhH-HHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh---hhHhhh--hHHHHHHHHHhcCCCCHHHHHHH
Q 005727 267 IKADPADGFDVGPI-LSIATRQLSSEWEATRIEALHWISTLLNRHR---TEVLHF--LNDIFDTLLKALSDPSDEVVLLV 340 (680)
Q Consensus 267 ~v~~~~~~ldl~~i-L~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p---~~~~~~--l~~l~p~LL~~LsD~s~eV~~~a 340 (680)
.+. ..+.+ ++.+.....+.++.+|..++.|+..+.+..+ ..+... ++.+.+.+.++++|++++||..+
T Consensus 124 ~~~------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~A 197 (228)
T PF12348_consen 124 SCS------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAA 197 (228)
T ss_dssp TS-------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHH
T ss_pred HCC------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHH
Confidence 443 02455 7888889999999999999999999999999 455443 58899999999999999999988
Q ss_pred HHHHHHHh
Q 005727 341 LEVHACIA 348 (680)
Q Consensus 341 l~lLa~Is 348 (680)
-+++..+.
T Consensus 198 r~~~~~l~ 205 (228)
T PF12348_consen 198 RECLWALY 205 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777665
No 33
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.99 E-value=7.5e-07 Score=101.71 Aligned_cols=259 Identities=14% Similarity=0.197 Sum_probs=182.0
Q ss_pred HHHhhcCCChhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhh-chHH
Q 005727 78 LCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG-FLPD 155 (680)
Q Consensus 78 L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~-~Lp~ 155 (680)
+...+++.+.+.-+.+ ..|++++++..-.. -.+.+.|.|...+.+++|.||..++..++.+...++..... .=++
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~---l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~ 119 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALSPDS---LLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE 119 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccCHHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence 4444444443333344 77888877543322 26789999999999999999999999999887766542221 2267
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHH-----HHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcc
Q 005727 156 FLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRM-----AEILVQRAASPDEFTRLTAITWINEFVKLGGDQ 230 (680)
Q Consensus 156 ~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~I-----I~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~ 230 (680)
+++.+..++.|++.+|.+.|.++|..+.+ . ...++.+ ++.|..-+..+++.+|..+.+-+..+...+++.
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~---~--~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLAS---H--PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhC---C--chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 89999999999999999999988888764 1 1233334 667777777778889988888777776666544
Q ss_pred cccchH--hHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCCh---HhHHHHHHHhcCCCcHHH-----HH-HH
Q 005727 231 LVPYYA--DILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV---GPILSIATRQLSSEWEAT-----RI-EA 299 (680)
Q Consensus 231 l~pfLp--~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl---~~iL~vL~~~L~~~~~~t-----R~-aa 299 (680)
+ .+.- ++++.++..+.++|.-++..|.+...++.. +..+..| ..+++.|...+.+..... .+ ..
T Consensus 195 ~-~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~----~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~ 269 (503)
T PF10508_consen 195 A-EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE----TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGR 269 (503)
T ss_pred H-HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc----ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhH
Confidence 3 3333 489999999999777788777777665433 1122221 345666666654332222 22 22
Q ss_pred HHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005727 300 LHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (680)
Q Consensus 300 L~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~ 349 (680)
++..+.++...|..+....+.++..+...+...++..+..|+.+|+.|++
T Consensus 270 ~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs 319 (503)
T PF10508_consen 270 MKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGS 319 (503)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhC
Confidence 36777888888999888888888888888888889999999999999994
No 34
>PTZ00429 beta-adaptin; Provisional
Probab=98.98 E-value=3e-06 Score=100.21 Aligned_cols=358 Identities=15% Similarity=0.150 Sum_probs=230.3
Q ss_pred hhccCCCCHH-HHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccccHhhh
Q 005727 38 LNSFSDQDSR-VRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEF 115 (680)
Q Consensus 38 L~~l~D~d~r-VR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L~~f 115 (680)
-..|..++.. +|.+....++++. .|.- ...+|....++++.+|..+|+-. -.+-+..+ .... -.-..
T Consensus 38 r~~L~s~~~~~kk~alKkvIa~mt---~G~D---vS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~----~~pe-lalLa 106 (746)
T PTZ00429 38 QNDLNGTDSYRKKAAVKRIIANMT---MGRD---VSYLFVDVVKLAPSTDLELKKLVYLYVLSTAR----LQPE-KALLA 106 (746)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHH---CCCC---chHHHHHHHHHhCCCCHHHHHHHHHHHHHHcc----cChH-HHHHH
Confidence 3444455554 4444444444443 4432 23466666778888999999877 44444322 1111 12235
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCC-Ch
Q 005727 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV-DY 194 (680)
Q Consensus 116 IP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~-d~ 194 (680)
+..+..-+.++||.+|-.|+..+.. +.. -..++.+.+.+.+.+.|+++-||+.|.-|+..+.+. .++. .-
T Consensus 107 INtl~KDl~d~Np~IRaLALRtLs~---Ir~---~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~---~pelv~~ 177 (746)
T PTZ00429 107 VNTFLQDTTNSSPVVRALAVRTMMC---IRV---SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD---DMQLFYQ 177 (746)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHc---CCc---HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh---Ccccccc
Confidence 8888888999999999999876664 333 334566677888999999999999998887776542 2222 22
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCC
Q 005727 195 GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADG 274 (680)
Q Consensus 195 ~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ 274 (680)
.++++.|...+.++|+.|...|+..+.++.+..|..+ ......+..++..+.+-++--+- ...+.+.... +.+.
T Consensus 178 ~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l-~l~~~~~~~Ll~~L~e~~EW~Qi---~IL~lL~~y~--P~~~ 251 (746)
T PTZ00429 178 QDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI-ESSNEWVNRLVYHLPECNEWGQL---YILELLAAQR--PSDK 251 (746)
T ss_pred cchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh-HHHHHHHHHHHHHhhcCChHHHH---HHHHHHHhcC--CCCc
Confidence 4567777777889999999999999999987766442 33444455556555544432221 1222222211 2233
Q ss_pred CChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhh-HhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-ccc
Q 005727 275 FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTE-VLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQ 352 (680)
Q Consensus 275 ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~-~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~-~~~ 352 (680)
-+...+++.+...|.+.+..+..+|++.+..+...++.+ +......+-+.++.. ...+++++-.+++.+..|.. ...
T Consensus 252 ~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~ 330 (746)
T PTZ00429 252 ESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFPN 330 (746)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCHH
Confidence 446789999999999999999999999998887654333 333344455666644 55678898899988877774 344
Q ss_pred hHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcChhhHHHHHHHhhcccCChhHHHHHHHHHHHHHhchH
Q 005727 353 HFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSS 424 (680)
Q Consensus 353 ~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~e~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTa~ 424 (680)
.|.+-+..+.-++.+.. -...+.=-|+-.||..-|.+.|.+.|.+-.. +.|.+|+...|+.+..+-+.-+
T Consensus 331 lf~~~~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~-d~D~ef~r~aIrAIg~lA~k~~ 400 (746)
T PTZ00429 331 LLRTNLDSFYVRYSDPP-FVKLEKLRLLLKLVTPSVAPEILKELAEYAS-GVDMVFVVEVVRAIASLAIKVD 400 (746)
T ss_pred HHHHHHHhhhcccCCcH-HHHHHHHHHHHHHcCcccHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHhCh
Confidence 55554444434444433 3344433477778877787888888887664 4677888888888877765433
No 35
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.91 E-value=1.4e-06 Score=99.62 Aligned_cols=331 Identities=16% Similarity=0.243 Sum_probs=223.0
Q ss_pred hhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchh-hhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhcc
Q 005727 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFI-IFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES 107 (680)
Q Consensus 30 L~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il-~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es 107 (680)
.+.+.+.+..++..+++.||..|+..+.+++....+... ..=+++++.+..++.|+|.+|.+.| ..|.++.+ ..
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~----~~ 150 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS----HP 150 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC----Cc
Confidence 566778899999999999999999998777643222111 1116789999999999999999988 66666544 11
Q ss_pred ccccHhhh-----HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHH--HHHHHHHhcCCCChhHHHHHHHHHH
Q 005727 108 DQFSIEEF-----IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPD--FLDGLFNMLSDSSHEIRQQADSALW 180 (680)
Q Consensus 108 ~~f~L~~f-----IP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~--~L~~Lf~lLsD~~~dVR~~a~~~L~ 180 (680)
. .++.+ ++.|...+...|+.+|.-+.+.+..+.+..+..+ .+.-+ +++.+++.+.+.|.-||..+.+++.
T Consensus 151 ~--~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~-~~~~~sgll~~ll~eL~~dDiLvqlnalell~ 227 (503)
T PF10508_consen 151 E--GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA-EAVVNSGLLDLLLKELDSDDILVQLNALELLS 227 (503)
T ss_pred h--hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH-HHHHhccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 1 12222 7888888887788999888898888888776444 44444 8999999999988889988888888
Q ss_pred HHHHHhhcCCCCC-h--HHHHHHHHHhcCCC--CH-H--HH-HHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCch
Q 005727 181 EFLQEIKNSPSVD-Y--GRMAEILVQRAASP--DE-F--TR-LTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEE 251 (680)
Q Consensus 181 ~fL~ei~~~~~~d-~--~~II~iLl~~~~s~--d~-~--ir-l~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~ 251 (680)
.+.. - .. ... + .++++.|...+.+. |+ . +- -..+...+.+....+..+..-.|.++..+..++...++
T Consensus 228 ~La~-~-~~-g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~ 304 (503)
T PF10508_consen 228 ELAE-T-PH-GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDP 304 (503)
T ss_pred HHHc-C-hh-HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCCh
Confidence 8865 1 11 111 1 23455555544333 22 1 11 12234445555556667777789999999988899999
Q ss_pred hHHHHHHHHHHHHHHhccC-----CCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh----hHhhhhHHHH
Q 005727 252 KIRVVARETNEELRAIKAD-----PADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT----EVLHFLNDIF 322 (680)
Q Consensus 252 eIR~~A~~~n~~Ll~~v~~-----~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~----~~~~~l~~l~ 322 (680)
..+.+|-++.+.+-..... ....-.+..++........+...+.|.++++.+..+...-++ ++....+..|
T Consensus 305 ~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~ 384 (503)
T PF10508_consen 305 TIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWY 384 (503)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 9999999888754211100 011223566777777777888888999999999998655443 3333333333
Q ss_pred H---------HHHHhcCCCCHHHHHHHHHHHHHHhhc---cch---HHHHHHHHHHhhcccch
Q 005727 323 D---------TLLKALSDPSDEVVLLVLEVHACIAKD---LQH---FRQLVVFLVHNFRVDNS 370 (680)
Q Consensus 323 p---------~LL~~LsD~s~eV~~~al~lLa~Is~~---~~~---F~~fm~~LL~lf~~d~~ 370 (680)
. .+++.++.|=+++|..++.+|..++.. ... ...|++-++++-....|
T Consensus 385 ~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K 447 (503)
T PF10508_consen 385 ESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTK 447 (503)
T ss_pred HHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCH
Confidence 2 567778888899999999999988842 111 22366666665544333
No 36
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.89 E-value=1.8e-07 Score=104.21 Aligned_cols=366 Identities=14% Similarity=0.149 Sum_probs=227.9
Q ss_pred hhhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhh
Q 005727 26 SETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVT 105 (680)
Q Consensus 26 ~~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkdiv~ 105 (680)
+-+|+..++.-+-.|+.|.+..||--++.++..+++.+..--...|++||..|.+.++.. ++..|..++|....
T Consensus 352 ~l~hl~~l~~ci~~~l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~h------rgk~l~sfLkA~g~ 425 (975)
T COG5181 352 RLSHLGPLLKCISKLLKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQH------RGKELVSFLKAMGF 425 (975)
T ss_pred HHhhhhhHHHHHHHHhhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhc------CCchHHHHHHHhcc
Confidence 357888888889999999999999999999999998877655567899999998766533 23446667775421
Q ss_pred -------ccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhh----chHHHHHHHH--HhcCC------
Q 005727 106 -------ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG----FLPDFLDGLF--NMLSD------ 166 (680)
Q Consensus 106 -------es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~----~Lp~~L~~Lf--~lLsD------ 166 (680)
|=........+..++.-+.+++.+.+.-++-....-+++-..+=-. ..|+|+..-. ++.+|
T Consensus 426 iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~ 505 (975)
T COG5181 426 IIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQ 505 (975)
T ss_pred ccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccce
Confidence 1122344556777777788887777766655555444444333222 3333333322 23343
Q ss_pred ---------------------------CChhHHHHHHHHHHHHHHHhhcCCCCC---hHHHHHHHHHhcCCCCHHHH--H
Q 005727 167 ---------------------------SSHEIRQQADSALWEFLQEIKNSPSVD---YGRMAEILVQRAASPDEFTR--L 214 (680)
Q Consensus 167 ---------------------------~~~dVR~~a~~~L~~fL~ei~~~~~~d---~~~II~iLl~~~~s~d~~ir--l 214 (680)
+..--|+++..+.++....++.. ++| -..++.-++...++++..+. +
T Consensus 506 v~~ttvilAk~~g~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~-~~dErleerl~d~il~Afqeq~~t~~~il 584 (975)
T COG5181 506 VVLTTVILAKMGGDPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRL-GFDERLEERLYDSILNAFQEQDTTVGLIL 584 (975)
T ss_pred eehhHHHHHHHcCChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccc-cccHHHHHHHHHHHHHHHHhccccccEEE
Confidence 33333333333333332222211 111 01122222222222211110 0
Q ss_pred HHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHH
Q 005727 215 TAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEA 294 (680)
Q Consensus 215 ~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~ 294 (680)
.+.. ......+....||+|.|+..+|+.|....|++|..|.+..+.+...++..++.-.+..+=.+|-+.+..+..+
T Consensus 585 ~~f~---tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypE 661 (975)
T COG5181 585 PCFS---TVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPE 661 (975)
T ss_pred eccc---ceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHH
Confidence 0000 0000113345799999999999999999999999999999988887776555444455556788889888888
Q ss_pred HHHHHHHHHHHHHhhC-hhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccc-h-----HHHHHHHHHHhhcc
Q 005727 295 TRIEALHWISTLLNRH-RTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQ-H-----FRQLVVFLVHNFRV 367 (680)
Q Consensus 295 tR~aaL~WL~~L~~~~-p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~~~-~-----F~~fm~~LL~lf~~ 367 (680)
+--..++.+..+.... ...|.|-..+++|.|.+.|......|+..+..+++.|+.+.+ | .-.+--+|+++++.
T Consensus 662 vLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks 741 (975)
T COG5181 662 VLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKS 741 (975)
T ss_pred HHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHH
Confidence 8888888888777664 456888999999999999999999999999999999985432 2 23344566777766
Q ss_pred cchhHHhHHHHHHHHHHhhcChhhHHHHHHHhhc
Q 005727 368 DNSLLEKRGALIIRRLCVLLDAERVYRELSTILE 401 (680)
Q Consensus 368 d~~lLe~rg~~IIrqLc~~L~~e~Iy~~La~iL~ 401 (680)
-+|-..+.+.--+--+..-+||+.|...|-+=|+
T Consensus 742 ~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLk 775 (975)
T COG5181 742 WNKEIRRNATETFGCISRAIGPQDVLDILLNNLK 775 (975)
T ss_pred hhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcch
Confidence 5554443333344445555666555555444443
No 37
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.85 E-value=4.2e-06 Score=98.36 Aligned_cols=383 Identities=15% Similarity=0.120 Sum_probs=248.4
Q ss_pred HHHHHHHHHhhhhhhhhhh-hhhhhhHHHHh-hccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCC
Q 005727 9 FEIIVEQFLLYADLFFYSE-TILQQIVPPVL-NSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSD 86 (680)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~-~yL~~Iv~~VL-~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d 86 (680)
|+...-.|++|+...-... .-+..=..++. .--.|..+.||.+++.-+++++++...+. ....+.+.+..+..|..
T Consensus 212 ~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~--~~s~v~~~~~~L~~Ddq 289 (759)
T KOG0211|consen 212 FQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEI--VKSEVLPTLIQLLRDDQ 289 (759)
T ss_pred hhcchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHH--HHhhccHHHhhhhhcch
Confidence 4455566777766555544 33333334444 44479999999999999999998876533 35567777888899999
Q ss_pred hhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcC
Q 005727 87 ANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLS 165 (680)
Q Consensus 87 ~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLs 165 (680)
.+||.+| +.+..+.+ +....+ --...+.|.+.+...+.++++|.....|..-+.+.-+. ...-++..+.....++
T Consensus 290 dsVr~~a~~~~~~l~~-l~~~~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~ 365 (759)
T KOG0211|consen 290 DSVREAAVESLVSLLD-LLDDDD-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLK 365 (759)
T ss_pred hhHHHHHHHHHHHHHH-hcCCch-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhc
Confidence 9999999 77666655 222211 12356899999999999999999999998888775554 3345566677778999
Q ss_pred CCChhHHHHHHHHHHHHHHHhhcCC--CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHh
Q 005727 166 DSSHEIRQQADSALWEFLQEIKNSP--SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAIL 243 (680)
Q Consensus 166 D~~~dVR~~a~~~L~~fL~ei~~~~--~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL 243 (680)
|...++|.+...-...|.......+ ++-...++|.+-..+.+.++.+|.....-+.....+.| .-.=++.++|+.+
T Consensus 366 ~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~ 443 (759)
T KOG0211|consen 366 DEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERTISELLPLLI 443 (759)
T ss_pred chhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcCccccChhhh
Confidence 9999999888777777765443322 23346678888888899898888765543333322222 1123566788888
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHhccC-CCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHH
Q 005727 244 PCISDKEEKIRVVARETNEELRAIKAD-PADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIF 322 (680)
Q Consensus 244 ~~Lsds~~eIR~~A~~~n~~Ll~~v~~-~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~ 322 (680)
..+.|..+++|.--...... .+.+.+ .+-..--...++.+.+.-.+.+|..|.+.+..+-.++.-....++ .+.+-
T Consensus 444 ~~l~de~~~V~lnli~~ls~-~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~--~~~~~ 520 (759)
T KOG0211|consen 444 GNLKDEDPIVRLNLIDKLSL-LEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFF--DEKLA 520 (759)
T ss_pred hhcchhhHHHHHhhHHHHHH-HHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHh--hHHHH
Confidence 88999999888543322211 122211 111222356677777777677899999888877766665542222 23355
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHh---hccchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcChhhHHHHHHHh
Q 005727 323 DTLLKALSDPSDEVVLLVLEVHACIA---KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTI 399 (680)
Q Consensus 323 p~LL~~LsD~s~eV~~~al~lLa~Is---~~~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~e~Iy~~La~i 399 (680)
+.+..-|-|...+++..+...+...+ +.+-+=...+..++.+..++.=+....-.+-|.-+...+|.|-..+.|..+
T Consensus 521 ~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~ 600 (759)
T KOG0211|consen 521 ELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPV 600 (759)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHH
Confidence 56667788888889887777666655 222334457777777776652222222233444555556666666666666
Q ss_pred hcc
Q 005727 400 LEG 402 (680)
Q Consensus 400 L~~ 402 (680)
+..
T Consensus 601 ~~~ 603 (759)
T KOG0211|consen 601 FLD 603 (759)
T ss_pred HHH
Confidence 543
No 38
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.85 E-value=2.7e-06 Score=94.95 Aligned_cols=330 Identities=20% Similarity=0.249 Sum_probs=210.9
Q ss_pred hhhhhhhHHHHhhccCC-----CCHHHHHHHHHHHHHHHHhhccch-----hhhHHH-HHHHHHHhhcCC---ChhHHHH
Q 005727 27 ETILQQIVPPVLNSFSD-----QDSRVRYYACEALYNIAKVVRGDF-----IIFFNQ-IFDALCKLSADS---DANVQSA 92 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~D-----~d~rVR~~A~eaL~nI~kv~~~~i-----l~~f~e-Ifd~L~kL~aD~---d~~Vr~g 92 (680)
...++.+++.++.-+.. .+...-..++++++++.+...... ..|+++ +.+.+.+.+.+. +.+....
T Consensus 33 ~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~ 112 (415)
T PF12460_consen 33 PQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDR 112 (415)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchH
Confidence 45566666666655543 256666777888888865443322 244454 666666654211 1111112
Q ss_pred H-HHHHHHHHHHhhcccccc----HhhhHHHHH-----HHhc-CCC---HHHHHHHHHHHHHhhcCCchhhhhchHHHHH
Q 005727 93 A-HLLDRLVKDIVTESDQFS----IEEFIPLLR-----ERMN-VLN---PYVRQFLVGWITVLDSVPDIDMLGFLPDFLD 158 (680)
Q Consensus 93 A-~~Ldrllkdiv~es~~f~----L~~fIP~L~-----e~i~-~~n---p~vR~~avswI~~L~sip~~~Li~~Lp~~L~ 158 (680)
. +.+.+++.-++...+.-. ++.+...+. ..+. ..+ ..-+...+-.-+.+.+.++.--++...++++
T Consensus 113 ~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~ 192 (415)
T PF12460_consen 113 VLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQ 192 (415)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHH
Confidence 2 445666666666432111 333333333 0111 111 1333444444567777777666678888999
Q ss_pred HHHHhcCC-CChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhc-CCCCHH---HHHHHHHHHHHHHHhcCccccc
Q 005727 159 GLFNMLSD-SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRA-ASPDEF---TRLTAITWINEFVKLGGDQLVP 233 (680)
Q Consensus 159 ~Lf~lLsD-~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~-~s~d~~---irl~Al~WL~e~~~l~~~~l~p 233 (680)
.+.++... .++.+|..+.+++..++...+. +-+++++++.+.... ...++. .......|+..-.-+-+. |
T Consensus 193 ~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~---~ 267 (415)
T PF12460_consen 193 SLLNLALSSEDEFSRLAALQLLASLVNKWPD--DDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH---P 267 (415)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCCC--hhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC---c
Confidence 99988755 4588999999988887754322 225788888887777 222322 445566798765444332 4
Q ss_pred chHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccC---CCCCC---------ChHhHHHHHHHhcCCCcHHHHHHHHH
Q 005727 234 YYADILGAILPCISDKEEKIRVVARETNEELRAIKAD---PADGF---------DVGPILSIATRQLSSEWEATRIEALH 301 (680)
Q Consensus 234 fLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~---~~~~l---------dl~~iL~vL~~~L~~~~~~tR~aaL~ 301 (680)
.-.+++..++..+++ +++...|.+.-+-++.-..+ ..... =|..++|.|.+.+.+.+...|...+.
T Consensus 268 ~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ 345 (415)
T PF12460_consen 268 LATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLT 345 (415)
T ss_pred hHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHH
Confidence 556677777777777 66677776666544433111 11111 26788999999998877779999999
Q ss_pred HHHHHHhhChhhH-hhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc-----cchHHHHHHHHHH
Q 005727 302 WISTLLNRHRTEV-LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD-----LQHFRQLVVFLVH 363 (680)
Q Consensus 302 WL~~L~~~~p~~~-~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~-----~~~F~~fm~~LL~ 363 (680)
.|..+.+..|..+ .+++++++|.|+++|+-++++|+..++++|..+.++ .+|.+.+++.|++
T Consensus 346 ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 346 ALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 9999999999986 789999999999999999999999999999988843 2356666666654
No 39
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.84 E-value=1.5e-05 Score=88.68 Aligned_cols=333 Identities=18% Similarity=0.177 Sum_probs=222.9
Q ss_pred hhhhhhhH-HHHhhccCCCCHHHHHHHHHHHHHHHHh-hccch-hhh---------------HHHHHHHHHHhhc-----
Q 005727 27 ETILQQIV-PPVLNSFSDQDSRVRYYACEALYNIAKV-VRGDF-IIF---------------FNQIFDALCKLSA----- 83 (680)
Q Consensus 27 ~~yL~~Iv-~~VL~~l~D~d~rVR~~A~eaL~nI~kv-~~~~i-l~~---------------f~eIfd~L~kL~a----- 83 (680)
..|++.-+ .-..+.+..++.+|--.|-|=-..|..- ..++. ..+ ..+|+|.|.+++.
T Consensus 257 ~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed 336 (858)
T COG5215 257 QSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGED 336 (858)
T ss_pred HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCC
Confidence 34555444 3345667888888887776654333211 11110 112 3457777777653
Q ss_pred --CCChhHHHHH-HHH---HHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchh-hhhchHHH
Q 005727 84 --DSDANVQSAA-HLL---DRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID-MLGFLPDF 156 (680)
Q Consensus 84 --D~d~~Vr~gA-~~L---drllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~-Li~~Lp~~ 156 (680)
+.|.|+-.+| .+| ..+.+|.+.+ .....+-.-+..+++.-|..++-..+.+-.-|..+ +.++.|+.
T Consensus 337 ~~~DdWn~smaA~sCLqlfaq~~gd~i~~-------pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qa 409 (858)
T COG5215 337 YYGDDWNPSMAASSCLQLFAQLKGDKIMR-------PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQA 409 (858)
T ss_pred ccccccchhhhHHHHHHHHHHHhhhHhHH-------HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhh
Confidence 2344666666 433 3444444432 24556667778999999999999999776666655 56799999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC--CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HH-Hhc-----
Q 005727 157 LDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS--PSVDYGRMAEILVQRAASPDEFTRLTAITWINE-FV-KLG----- 227 (680)
Q Consensus 157 L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~--~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e-~~-~l~----- 227 (680)
++++.++++|+.--|+..++-|++.+...+... |..++..++...+.-+.+ .+. +.+++.|-.+ ++ .++
T Consensus 410 lp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~-~~~ncsw~~~nlv~h~a~a~~~ 487 (858)
T COG5215 410 LPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPF-RSINCSWRKENLVDHIAKAVRE 487 (858)
T ss_pred hHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cch-HHhhhHHHHHhHHHhhhhhhcc
Confidence 999999999999999988888888887666543 445788888877776554 233 4455666443 22 222
Q ss_pred -CcccccchHhHHHHHhhh--hcCCchhHHHHHHHHHHHHHHhccCC-----------------------C------C--
Q 005727 228 -GDQLVPYYADILGAILPC--ISDKEEKIRVVARETNEELRAIKADP-----------------------A------D-- 273 (680)
Q Consensus 228 -~~~l~pfLp~LLp~LL~~--Lsds~~eIR~~A~~~n~~Ll~~v~~~-----------------------~------~-- 273 (680)
+.-+.+|.+.|+.++++. +.+++...|..+-++.+++.....+. + +
T Consensus 488 ~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~ 567 (858)
T COG5215 488 VESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQL 567 (858)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 445889999999999884 44677788888877777665433221 0 0
Q ss_pred --------------------CC---Ch-HhHHHHHHHhcCCCc-HHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHh
Q 005727 274 --------------------GF---DV-GPILSIATRQLSSEW-EATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKA 328 (680)
Q Consensus 274 --------------------~l---dl-~~iL~vL~~~L~~~~-~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~ 328 (680)
.- +. +.+++.+.+.+.+.. ...-..++..++++.....+++..|.++++|+|.+.
T Consensus 568 ~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~a 647 (858)
T COG5215 568 LVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRA 647 (858)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 01 12 235555555554432 223455677888888888899999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhh--c---cchHHHHHHHHHHhhccc
Q 005727 329 LSDPSDEVVLLVLEVHACIAK--D---LQHFRQLVVFLVHNFRVD 368 (680)
Q Consensus 329 LsD~s~eV~~~al~lLa~Is~--~---~~~F~~fm~~LL~lf~~d 368 (680)
|+-.+--|-..+..+.++++. + ..|=+.+|..|.+++++.
T Consensus 648 ln~~d~~v~~~avglvgdlantl~~df~~y~d~~ms~LvQ~lss~ 692 (858)
T COG5215 648 LNCTDRFVLNSAVGLVGDLANTLGTDFNIYADVLMSSLVQCLSSE 692 (858)
T ss_pred hcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCh
Confidence 987777788899999999993 2 245567999999999876
No 40
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.81 E-value=1.3e-06 Score=102.53 Aligned_cols=322 Identities=16% Similarity=0.156 Sum_probs=222.3
Q ss_pred HHHHhhhhhhhhhhhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH
Q 005727 14 EQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA 93 (680)
Q Consensus 14 ~~~~~~~~~~~~~~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA 93 (680)
+-+..+++.+..-..--..+.+..+...+|.++++||..++....+.+.... ...+++..+....++.|...++|.++
T Consensus 298 ~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~ 375 (759)
T KOG0211|consen 298 ESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAI 375 (759)
T ss_pred HHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHh
Confidence 3444444555543355566677788888888888888887776666555444 23455667777777888888888766
Q ss_pred -HHHHHHHHHHhhc-c-ccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChh
Q 005727 94 -HLLDRLVKDIVTE-S-DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHE 170 (680)
Q Consensus 94 -~~Ldrllkdiv~e-s-~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~d 170 (680)
.-...+.. .... + ..-..+.++|.+.+...+.++.+|....+-+..+..+-+. -.-++.+++.+...+.|..++
T Consensus 376 a~~~~~l~~-~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti~~llp~~~~~l~de~~~ 452 (759)
T KOG0211|consen 376 AKKVQKLAC-YLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTISELLPLLIGNLKDEDPI 452 (759)
T ss_pred hcchHHHhh-hcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCccccChhhhhhcchhhHH
Confidence 22222211 1110 0 1234556789999999999999999999888877765552 344566777778899999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC--ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcC
Q 005727 171 IRQQADSALWEFLQEIKNSPSV--DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISD 248 (680)
Q Consensus 171 VR~~a~~~L~~fL~ei~~~~~~--d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsd 248 (680)
||.....-+. .+........+ .-+..++.+.....+..+.+|...++.+...+.-.| +.=+-+++-+.+..-+.|
T Consensus 453 V~lnli~~ls-~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~~~~~l~~~~l~d 529 (759)
T KOG0211|consen 453 VRLNLIDKLS-LLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDEKLAELLRTWLPD 529 (759)
T ss_pred HHHhhHHHHH-HHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhHHHHHHHHhhhhh
Confidence 9976543322 22222222222 246677777777777778899988887776654444 122234455566666777
Q ss_pred CchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHh
Q 005727 249 KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKA 328 (680)
Q Consensus 249 s~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~ 328 (680)
...+||+.|......+.... |..+.-..+++.+.....++++..|.+.+.-+..+++.++..+. ...++|.+...
T Consensus 530 ~v~~Ir~~aa~~l~~l~~~~---G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~--~~~Llp~~~~l 604 (759)
T KOG0211|consen 530 HVYSIREAAARNLPALVETF---GSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEIT--CEDLLPVFLDL 604 (759)
T ss_pred hHHHHHHHHHHHhHHHHHHh---CcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHH--HHHHhHHHHHh
Confidence 78899998887766544443 34455677788777777777899999999999999999988865 46799999999
Q ss_pred cCCCCHHHHHHHHHHHHHHh
Q 005727 329 LSDPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 329 LsD~s~eV~~~al~lLa~Is 348 (680)
..|+.+.||-.++..|.+|.
T Consensus 605 ~~D~vanVR~nvak~L~~i~ 624 (759)
T KOG0211|consen 605 VKDPVANVRINVAKHLPKIL 624 (759)
T ss_pred ccCCchhhhhhHHHHHHHHH
Confidence 99999999999998888877
No 41
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=98.73 E-value=7.7e-06 Score=105.15 Aligned_cols=450 Identities=18% Similarity=0.220 Sum_probs=284.7
Q ss_pred hhHHH-HhhccCCCCHHHHHHHHHH----HHHHHHhhcc---chhhhHHHHHHHHHHh-hcCCChhHHHHH-HHHHHHHH
Q 005727 32 QIVPP-VLNSFSDQDSRVRYYACEA----LYNIAKVVRG---DFIIFFNQIFDALCKL-SADSDANVQSAA-HLLDRLVK 101 (680)
Q Consensus 32 ~Iv~~-VL~~l~D~d~rVR~~A~ea----L~nI~kv~~~---~il~~f~eIfd~L~kL-~aD~d~~Vr~gA-~~Ldrllk 101 (680)
.++.. +.......|..+|..|+.. +-.... ++. ..+.++..++.+++.+ .+|+|+.++... ..++ +
T Consensus 480 ~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~-~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~ 555 (2341)
T KOG0891|consen 480 LFVQQCVDSYLEADDSEIRKNAALTCCELLKYDII-CSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---E 555 (2341)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhh-hhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---c
Confidence 33433 4445566789999999433 332222 222 1235677888888755 699999988876 4444 2
Q ss_pred HHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCC--hhHH--HHHHH
Q 005727 102 DIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSS--HEIR--QQADS 177 (680)
Q Consensus 102 div~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~--~dVR--~~a~~ 177 (680)
+.... ..-+..+..++..+++.+-.++..++..++++.+.++ ...+|.+......++++-. .-.| ..++.
T Consensus 556 ~~~~~---laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~---a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~ 629 (2341)
T KOG0891|consen 556 RFDAQ---LAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNP---AYVLPSLRKTLLELLTELEFSGMARTKEESAK 629 (2341)
T ss_pred chhhh---hcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccH---HHHhHHHHHHHHHHhchhhhcchHHhHHHHHH
Confidence 22221 1224467778899999999999999999999998888 7788999999998888843 2234 33333
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCC-chhHHHH
Q 005727 178 ALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDK-EEKIRVV 256 (680)
Q Consensus 178 ~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds-~~eIR~~ 256 (680)
-+......+..-....+++++..++..+++++..+..++++-+++++.++|..+..+...+++.+.+.+.|. ....|.+
T Consensus 630 ~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~a 709 (2341)
T KOG0891|consen 630 LLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLA 709 (2341)
T ss_pred HhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhH
Confidence 333333333322244678888999999999999999999999999999999999999999999999999976 4667777
Q ss_pred HHHHHHHHHHhccCCC----CCCChHhHHHHHHHhcCCCcHH-HHHHHHHHHHHHHhhChhh------------------
Q 005727 257 ARETNEELRAIKADPA----DGFDVGPILSIATRQLSSEWEA-TRIEALHWISTLLNRHRTE------------------ 313 (680)
Q Consensus 257 A~~~n~~Ll~~v~~~~----~~ldl~~iL~vL~~~L~~~~~~-tR~aaL~WL~~L~~~~p~~------------------ 313 (680)
+.++++.+ ..+.+ ...++|.+++.+...+..+... .|.++++-++.+....|..
T Consensus 710 slk~l~~l---~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~d~~~~~~~~~~~~~~~~~~~~k 786 (2341)
T KOG0891|consen 710 ALKALGQL---ESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGALDPYKHKVTEGTSASKISSEQIK 786 (2341)
T ss_pred HHHHhhhh---hcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhcccchhHHHHHhhhhhHhhhhcccc
Confidence 77777743 33222 2467899999999888765533 6888888888666555441
Q ss_pred -----------HhhhhHHHHH-----HHHHhcCCCCHHHHH-HHHHHHHHHh-----hccchHHHHHHHHHHhhcccchh
Q 005727 314 -----------VLHFLNDIFD-----TLLKALSDPSDEVVL-LVLEVHACIA-----KDLQHFRQLVVFLVHNFRVDNSL 371 (680)
Q Consensus 314 -----------~~~~l~~l~p-----~LL~~LsD~s~eV~~-~al~lLa~Is-----~~~~~F~~fm~~LL~lf~~d~~l 371 (680)
+.+-.++.+| .++..+.|++....+ ...++...|. +...+.+.+++.++...+....
T Consensus 787 ~~~~~~~~~~~~~~~~~e~~p~v~I~~l~~~l~d~~~~~~l~~~~~a~~~i~~~~~~~~~l~l~qv~~~~~~~~r~~~~- 865 (2341)
T KOG0891|consen 787 SDIDISLLESGVNPSNDEYYPAVTIHALMGILKDPSLSIHHTAVAQAIMHIFQSLGLKCVLFLDQVIPTLIDVMRSCPP- 865 (2341)
T ss_pred ccchHHHHHhhhhhhhhhhhhHHHHHHHhhhhhhhhhHHHHHHhhhchhHHHHhhccchhhhHHHHHHHHHHHHHhcCc-
Confidence 1111122333 555666777665555 4555666555 3567889999999998886544
Q ss_pred HHhHHHHHHHHHHhhcCh--hhHHHHHHHhhcccCCh--hHHHHHHHHHHHHHhchHHH-HHHHHHHhhccCCcchHHHH
Q 005727 372 LEKRGALIIRRLCVLLDA--ERVYRELSTILEGEADL--DFACTMVQALNLILLTSSEL-SELRDLLKKSLVNPAGKDLF 446 (680)
Q Consensus 372 Le~rg~~IIrqLc~~L~~--e~Iy~~La~iL~~~~Dl--~F~~~mVq~Ln~iLLTa~EL-~~lR~~L~~~l~~~~~~~lF 446 (680)
.-..+++.++|...-. .++......+.....+. .-.+...+.++.+--...++ .+|.+++.+.+ ..+
T Consensus 866 --~~~~f~~~q~~~~~~~~~~h~~~~~~~i~~~i~~~~~~~~~l~~~~~~l~~~i~~~l~~~f~~~l~~~~------~~~ 937 (2341)
T KOG0891|consen 866 --NLREFYFQQLTSLVAIVRQHIRPYMESIFTLIKDFWPPDTSLQITIISLIEDIAVALGGEFKKYLPELL------PTM 937 (2341)
T ss_pred --chhHHHHHhhhhhhhccchhHhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhc------cch
Confidence 2235678888877654 34444444443322222 12222233333333333444 56666665511 111
Q ss_pred HHHHHHhccChhHHHHHHHHhhhhHHHHHHHHHHhhcCcchhhHHh--HHHHHHhhccchh-HHHHHHhcCC
Q 005727 447 VSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQ--LDKLIRLLETPIF-AYLRLQLLEP 515 (680)
Q Consensus 447 ~~L~~~w~~n~v~~~slcll~~~Y~~a~~ll~~~~~~~~~~~~l~q--id~LVqLlEsPif-~~lRlqLLe~ 515 (680)
.+-+...--. .-.....+.+.+-..+-+.+.+.+ .+.+|||+|++.+ ...|.-.+++
T Consensus 938 l~~~~~~~s~------------~~~~~~~~~~~~~~~~~~~~~~~hl~~~~~vkl~~~~~~~~~~~~~~l~t 997 (2341)
T KOG0891|consen 938 LTVLQHDKSK------------DRVVSRKVLQSLQKFGSNLEQYLHLLLPPIVKLFEDPTVPLSIRKSALIT 997 (2341)
T ss_pred heeecccccc------------hHHHHHHhhHHHHhcCccHHhhHhhhccHHHHHHhhhhhhHHHHhhHHHH
Confidence 1111111000 223445666777777777776666 8999999999976 3344444444
No 42
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=4.5e-07 Score=101.47 Aligned_cols=348 Identities=18% Similarity=0.161 Sum_probs=227.3
Q ss_pred hhHHHHhhccC-CCCHHHHHHHHHHHHHHHHhhccch-hhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHH------HHH
Q 005727 32 QIVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRGDF-IIFFNQIFDALCKLSADSDANVQSAA-HLLDRL------VKD 102 (680)
Q Consensus 32 ~Iv~~VL~~l~-D~d~rVR~~A~eaL~nI~kv~~~~i-l~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrl------lkd 102 (680)
.++|....++. |.++.+|+-|+=+|.||+......- ..-=....+.+.+++.+++..|++-| -+|... +.|
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence 57788899995 8889999999999999986433210 00112345667889999999999999 778764 456
Q ss_pred HhhccccccHhhhHHHHHHHhcCCCH-HHHHHHHHHHHHhhcCC-chhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 005727 103 IVTESDQFSIEEFIPLLRERMNVLNP-YVRQFLVGWITVLDSVP-DIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALW 180 (680)
Q Consensus 103 iv~es~~f~L~~fIP~L~e~i~~~np-~vR~~avswI~~L~sip-~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~ 180 (680)
+|-..+ .+++|...+...++ .....+.-.+.+|.... |..=...+-.+|+.|++++-..+++|..-||-++.
T Consensus 189 ~vl~~g------~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAls 262 (514)
T KOG0166|consen 189 YVLSCG------ALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALS 262 (514)
T ss_pred HHHhhc------chHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 666666 47777777777665 45555666677776543 43345677889999999999999999999999988
Q ss_pred HHHHHhhcCCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccccc--chHhHHHHHhhhhcCC-chhHHHH
Q 005727 181 EFLQEIKNSPSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP--YYADILGAILPCISDK-EEKIRVV 256 (680)
Q Consensus 181 ~fL~ei~~~~~~d-~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~p--fLp~LLp~LL~~Lsds-~~eIR~~ 256 (680)
.+...-....+.- -.++++-|+..+.+++..++.-|+..++.++.-.+ .... --...+|.+...+.-+ .+.||+.
T Consensus 263 yLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d-~QTq~vi~~~~L~~l~~ll~~s~~~~ikkE 341 (514)
T KOG0166|consen 263 YLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSD-EQTQVVINSGALPVLSNLLSSSPKESIKKE 341 (514)
T ss_pred HHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccH-HHHHHHHhcChHHHHHHHhccCcchhHHHH
Confidence 7764221110111 15678889999999998888888888887532221 1111 1345677777778744 4558887
Q ss_pred HHHHHHHHH-------HhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhH--HHHHHHHH
Q 005727 257 ARETNEELR-------AIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN--DIFDTLLK 327 (680)
Q Consensus 257 A~~~n~~Ll-------~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~--~l~p~LL~ 327 (680)
|.-+...+. +.+-+ ..+++.|...+.+....+|.+|.-.++.+..+.-.+-..|+- ++++.+..
T Consensus 342 AcW~iSNItAG~~~qiqaVid-------a~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcd 414 (514)
T KOG0166|consen 342 ACWTISNITAGNQEQIQAVID-------ANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCD 414 (514)
T ss_pred HHHHHHHhhcCCHHHHHHHHH-------cccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhh
Confidence 766544221 11111 368889999999888889888888888776665544444432 36677777
Q ss_pred hcCCCCHHHHHHHHHHHHHHhh---ccchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcChhhHHHHHHHhhcc
Q 005727 328 ALSDPSDEVVLLVLEVHACIAK---DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEG 402 (680)
Q Consensus 328 ~LsD~s~eV~~~al~lLa~Is~---~~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~e~Iy~~La~iL~~ 402 (680)
.|.=++..++..++..+..|-. ....+.. +.+..+-.+.. |-.-|..|+..-| |.||..--.|+++
T Consensus 415 lL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~---n~~~~~IEe~g-----gldkiE~LQ~hen-~~Iy~~A~~II~~ 483 (514)
T KOG0166|consen 415 LLTCPDVKIILVALDGLENILKVGEAEKNRGT---NPLAIMIEEAG-----GLDKIENLQSHEN-EEIYKKAYKIIDT 483 (514)
T ss_pred cccCCChHHHHHHHHHHHHHHHHHHHhccccc---cHHHHHHHHcc-----ChhHHHHhhcccc-HHHHHHHHHHHHH
Confidence 7766666778888877776652 1111111 11111111111 1123556666555 6788888888765
No 43
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.61 E-value=3.4e-05 Score=86.56 Aligned_cols=301 Identities=17% Similarity=0.176 Sum_probs=215.5
Q ss_pred hhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc----cc-----------------------h---------------h
Q 005727 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR----GD-----------------------F---------------I 68 (680)
Q Consensus 31 ~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~----~~-----------------------i---------------l 68 (680)
..++..++.++.|+..-.|+.++++...+..-.. ++ + .
T Consensus 520 ~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~k 599 (975)
T COG5181 520 PRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGK 599 (975)
T ss_pred hHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccC
Confidence 3477889999999988888888776544331110 00 1 1
Q ss_pred hhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhcccccc-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc
Q 005727 69 IFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFS-IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD 146 (680)
Q Consensus 69 ~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~-L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~ 146 (680)
+|.+.|.....+++..+.++||..| .+...+.+ ++..++.+. +.++=-.|-|.+....|++=-+++..|..+.++.+
T Consensus 600 p~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~-vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 600 PHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAK-VLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred cchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH-HHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhc
Confidence 4567888888889999999999888 66666655 444454332 56677788899999999999999999998888766
Q ss_pred hh-hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCC-C---ChHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 005727 147 ID-MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS-V---DYGRMAEILVQRAASPDEFTRLTAITWIN 221 (680)
Q Consensus 147 ~~-Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~-~---d~~~II~iLl~~~~s~d~~irl~Al~WL~ 221 (680)
.+ |.+-+..+++.|.-+|-.-+..|...+...++.... +.|. + .+-.|.=-|+..+.+.+.++|..|-+.++
T Consensus 679 ~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~---~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG 755 (975)
T COG5181 679 FRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICM---NSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFG 755 (975)
T ss_pred ccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHh---cCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhh
Confidence 33 445555666666666766666776666555554443 3332 1 23445555677778888999999988888
Q ss_pred HHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHH
Q 005727 222 EFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALH 301 (680)
Q Consensus 222 e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~ 301 (680)
-+.+.-|. .+++.+++.+|.-.+..-|....-+.+ .+++.. -.=.++|+|...-..++.-+.--+|+
T Consensus 756 ~Is~aiGP------qdvL~~LlnnLkvqeRq~RvctsvaI~----iVae~c---gpfsVlP~lm~dY~TPe~nVQnGvLk 822 (975)
T COG5181 756 CISRAIGP------QDVLDILLNNLKVQERQQRVCTSVAIS----IVAEYC---GPFSVLPTLMSDYETPEANVQNGVLK 822 (975)
T ss_pred hHHhhcCH------HHHHHHHHhcchHHHHHhhhhhhhhhh----hhHhhc---CchhhHHHHHhcccCchhHHHHhHHH
Confidence 77665442 368888999888766655533222221 222110 01257888888888888889999999
Q ss_pred HHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005727 302 WISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 302 WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is 348 (680)
.+..+.+..++.-..|...+.|.|-..|.|.++.-|+.+..++..++
T Consensus 823 am~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~ 869 (975)
T COG5181 823 AMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLV 869 (975)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999988
No 44
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=3.2e-06 Score=89.75 Aligned_cols=332 Identities=17% Similarity=0.172 Sum_probs=195.0
Q ss_pred hhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc--cch--hhhHHHH---------------HHHHHHhhcCCC-
Q 005727 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR--GDF--IIFFNQI---------------FDALCKLSADSD- 86 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~--~~i--l~~f~eI---------------fd~L~kL~aD~d- 86 (680)
..--.+..+||+..++.+|+.+.-+||+++.|.+-... +-+ +....-+ ...+..+.+=.+
T Consensus 80 r~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~n 159 (550)
T KOG4224|consen 80 RRVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSN 159 (550)
T ss_pred HHhhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccc
Confidence 33445567999999999999999999999998753221 100 0000000 011111111111
Q ss_pred --hhHHHHH-HHHHHHHH--HHhh---------------ccc-cccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhh--c
Q 005727 87 --ANVQSAA-HLLDRLVK--DIVT---------------ESD-QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLD--S 143 (680)
Q Consensus 87 --~~Vr~gA-~~Ldrllk--div~---------------es~-~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~--s 143 (680)
.-.+.|| +-+-|+.| |+-. |+- ..--.-=+|.|.+.+.+.|+.+|+++...|+++. .
T Consensus 160 k~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~ 239 (550)
T KOG4224|consen 160 KVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDR 239 (550)
T ss_pred hhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhH
Confidence 1222333 22333322 2211 100 0001123788999999999999999999999763 3
Q ss_pred CCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCC-HHHHHHHHHHHHH
Q 005727 144 VPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD-EFTRLTAITWINE 222 (680)
Q Consensus 144 ip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d-~~irl~Al~WL~e 222 (680)
....-+..-=|.+.+.|..++.|+++.|+-.|..+|+.+.....-...+-=..=+|.++.-++++- +.|. ..+.-|..
T Consensus 240 ~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plil-asVaCIrn 318 (550)
T KOG4224|consen 240 RARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLIL-ASVACIRN 318 (550)
T ss_pred HHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHH-HHHHHHhh
Confidence 455667788899999999999999999998887888766532211000001223345555556553 3332 22222333
Q ss_pred HHHhcCcccccchHhHHHHHhhhhcCC-chhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcH--HHHHHH
Q 005727 223 FVKLGGDQLVPYYADILGAILPCISDK-EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWE--ATRIEA 299 (680)
Q Consensus 223 ~~~l~~~~l~pfLp~LLp~LL~~Lsds-~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~--~tR~aa 299 (680)
+.-.++....--=..++.-+...+... ++|++-.|..+...+...-......+-=...++.+.+.+.+... ..++++
T Consensus 319 isihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisa 398 (550)
T KOG4224|consen 319 ISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISA 398 (550)
T ss_pred cccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHH
Confidence 221122111111112334455566655 45577777666654433211100001112346667777766554 467777
Q ss_pred HHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 005727 300 LHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFL 361 (680)
Q Consensus 300 L~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~~~~F~~fm~~L 361 (680)
--....+.+.....+..+ +++|.|++.+-|.+.||+-.+-..|..+|++.+++.+|++..
T Consensus 399 c~a~Lal~d~~k~~lld~--gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEaw 458 (550)
T KOG4224|consen 399 CIAQLALNDNDKEALLDS--GIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAW 458 (550)
T ss_pred HHHHHHhccccHHHHhhc--CCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHh
Confidence 777777877777766553 788999999999999999999999999999999988887765
No 45
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.55 E-value=1.2e-05 Score=89.25 Aligned_cols=241 Identities=15% Similarity=0.020 Sum_probs=168.9
Q ss_pred hhHHHHhhcc-CCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhcccc
Q 005727 32 QIVPPVLNSF-SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (680)
Q Consensus 32 ~Iv~~VL~~l-~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~ 109 (680)
..++.++..| .|++..||..|+-++... + -+..++.|++.+.|++++||.++ ..|..+
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~------~----~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i---------- 113 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQ------E----DALDLRSVLAVLQAGPEGLCAGIQAALGWL---------- 113 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhcc------C----ChHHHHHHHHHhcCCCHHHHHHHHHHHhcC----------
Confidence 4567788889 688899988766554211 1 12348899999999999999888 655432
Q ss_pred ccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC
Q 005727 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (680)
Q Consensus 110 f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~ 189 (680)
..+...+.|...+.+.+|++|..++..+..... +-.+.|...+.|+++.||..|..+|+.+-.
T Consensus 114 -~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-----------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~----- 176 (410)
T TIGR02270 114 -GGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH-----------DPGPALEAALTHEDALVRAAALRALGELPR----- 176 (410)
T ss_pred -CchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-----------ChHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----
Confidence 234467888888899999999999988876221 123467778889999999999888886642
Q ss_pred CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhcc
Q 005727 190 PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA 269 (680)
Q Consensus 190 ~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~ 269 (680)
...++.|...+.+.++.||..|+.-+..+ +. +.-++.++......+...+..+..... ..+
T Consensus 177 -----~~a~~~L~~al~d~~~~VR~aA~~al~~l---G~-------~~A~~~l~~~~~~~g~~~~~~l~~~la----l~~ 237 (410)
T TIGR02270 177 -----RLSESTLRLYLRDSDPEVRFAALEAGLLA---GS-------RLAWGVCRRFQVLEGGPHRQRLLVLLA----VAG 237 (410)
T ss_pred -----ccchHHHHHHHcCCCHHHHHHHHHHHHHc---CC-------HhHHHHHHHHHhccCccHHHHHHHHHH----hCC
Confidence 23445566678999999999998877532 22 333445554344444333333222221 212
Q ss_pred CCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005727 270 DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (680)
Q Consensus 270 ~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~ 349 (680)
-+..++.|...++++. +|.+++..++.+.. +..++.|+..++|+. ++..+-+++++|..
T Consensus 238 -------~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~----------p~av~~L~~~l~d~~--~aR~A~eA~~~ItG 296 (410)
T TIGR02270 238 -------GPDAQAWLRELLQAAA--TRREALRAVGLVGD----------VEAAPWCLEAMREPP--WARLAGEAFSLITG 296 (410)
T ss_pred -------chhHHHHHHHHhcChh--hHHHHHHHHHHcCC----------cchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence 1477888888887754 89999999997765 347889999999876 88899999999984
No 46
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.51 E-value=3.8e-05 Score=82.83 Aligned_cols=248 Identities=22% Similarity=0.188 Sum_probs=185.6
Q ss_pred hhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccc
Q 005727 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQF 110 (680)
Q Consensus 32 ~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f 110 (680)
..++.++..+.|++..||..|..++..+.. .+.++.|.+++.|.++.||..| ..|..+
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~----------- 101 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAAADALGEL----------- 101 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHHHHHHHcc-----------
Confidence 567889999999999999999888655432 5688999999999999999988 433322
Q ss_pred cHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCCh------------hHHHHHHH
Q 005727 111 SIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSH------------EIRQQADS 177 (680)
Q Consensus 111 ~L~~fIP~L~e~i~-~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~------------dVR~~a~~ 177 (680)
..+.-+|.+.+.+. +.|..||..+...++.+..... +.+|+..+.|... .+|.++..
T Consensus 102 ~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 102 GDPEAVPPLVELLENDENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 23445777777777 7999999999999987664433 5677778877662 56777666
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHH
Q 005727 178 ALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVA 257 (680)
Q Consensus 178 ~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A 257 (680)
.|..+- -+..++.+...+.+.+..+|..|...++.+. ... ..+.+.+.+.+++.+..+|..+
T Consensus 172 ~l~~~~----------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~---~~~-----~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 172 ALGELG----------DPEAIPLLIELLEDEDADVRRAAASALGQLG---SEN-----VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHHHcC----------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhh---cch-----hhHHHHHHHHhcCCCHHHHHHH
Confidence 655442 3556788888889888899998887776432 211 6778889999999999999887
Q ss_pred HHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHH
Q 005727 258 RETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVV 337 (680)
Q Consensus 258 ~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~ 337 (680)
..+.+ ..+.+..+..+...+.+..+..+..+-.|++ .-......+.++..+.|.+..++
T Consensus 234 ~~~l~-----------~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~ 292 (335)
T COG1413 234 LLALG-----------EIGDEEAVDALAKALEDEDVILALLAAAALG----------ALDLAEAALPLLLLLIDEANAVR 292 (335)
T ss_pred HHHhc-----------ccCcchhHHHHHHHHhccchHHHHHHHHHhc----------ccCchhhHHHHHHHhhcchhhHH
Confidence 77654 2335778888899999888888888877776 11233345567778889998999
Q ss_pred HHHHHHHHHHhh
Q 005727 338 LLVLEVHACIAK 349 (680)
Q Consensus 338 ~~al~lLa~Is~ 349 (680)
..+...+..+..
T Consensus 293 ~~~~~~l~~~~~ 304 (335)
T COG1413 293 LEAALALGQIGQ 304 (335)
T ss_pred HHHHHHHHhhcc
Confidence 888888888773
No 47
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=0.00036 Score=82.97 Aligned_cols=352 Identities=16% Similarity=0.133 Sum_probs=209.3
Q ss_pred hhhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCC-hhHHHHH-HHHHHHHHHH
Q 005727 26 SETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSD-ANVQSAA-HLLDRLVKDI 103 (680)
Q Consensus 26 ~~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d-~~Vr~gA-~~Ldrllkdi 103 (680)
+..+++.++..++.++.|.|..||..||-.+..+++-...+ -..+++...+.+.+-.+ .++=.|| -+|+.+...=
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~---Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rG 411 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE---LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRG 411 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH---HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC
Confidence 56889999999999999999999999998887765432211 23455555555443222 3445567 5666554411
Q ss_pred hhccccccHhhhHHHHHHHhc--------CCCHHHHHHHHHHHHHhhc-CCchhhhhchHHHHHHHH-HhcCCCChhHHH
Q 005727 104 VTESDQFSIEEFIPLLRERMN--------VLNPYVRQFLVGWITVLDS-VPDIDMLGFLPDFLDGLF-NMLSDSSHEIRQ 173 (680)
Q Consensus 104 v~es~~f~L~~fIP~L~e~i~--------~~np~vR~~avswI~~L~s-ip~~~Li~~Lp~~L~~Lf-~lLsD~~~dVR~ 173 (680)
+-- .--++..+|.+...+. .....||-.++-.+-.+.. -.+.++-+++..+..+|. ..+-|+.-.+|+
T Consensus 412 lLl--ps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRR 489 (1133)
T KOG1943|consen 412 LLL--PSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRR 489 (1133)
T ss_pred Ccc--hHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhH
Confidence 100 1235678888887775 3345799999988887765 445778888988888865 667899999999
Q ss_pred HHHHHHHHHHHHhhcCCC-------------------------------CChHHHHHHHHHh-cCCCCHHHHHHHHHHHH
Q 005727 174 QADSALWEFLQEIKNSPS-------------------------------VDYGRMAEILVQR-AASPDEFTRLTAITWIN 221 (680)
Q Consensus 174 ~a~~~L~~fL~ei~~~~~-------------------------------~d~~~II~iLl~~-~~s~d~~irl~Al~WL~ 221 (680)
+|..++.+.+..-++.|+ .+...+++-++.+ +.+=|..+|..+-.-+.
T Consensus 490 AAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~ 569 (1133)
T KOG1943|consen 490 AASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALH 569 (1133)
T ss_pred HHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence 999997766654444331 1124455555544 55667888888888888
Q ss_pred HHHHhcCcccc-cchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCC--C-CC------ChHhHHHHHH-HhcCC
Q 005727 222 EFVKLGGDQLV-PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA--D-GF------DVGPILSIAT-RQLSS 290 (680)
Q Consensus 222 e~~~l~~~~l~-pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~--~-~l------dl~~iL~vL~-~~L~~ 290 (680)
.+....|+.+. -++|++++- .--.+.+.|-.+..+.+++......-. . ++ ....+++.+. ..+.-
T Consensus 570 ~Ls~~~pk~~a~~~L~~lld~----~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~r 645 (1133)
T KOG1943|consen 570 KLSLTEPKYLADYVLPPLLDS----TLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYR 645 (1133)
T ss_pred HHHHhhHHhhcccchhhhhhh----hcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhcc
Confidence 77766666655 345555544 444455566555544444332211100 0 00 1122333222 22221
Q ss_pred C-cHHHHHHHHHHHHHHHhhChhhHhhhh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh----ccchHH-HHHHHHHH
Q 005727 291 E-WEATRIEALHWISTLLNRHRTEVLHFL-NDIFDTLLKALSDPSDEVVLLVLEVHACIAK----DLQHFR-QLVVFLVH 363 (680)
Q Consensus 291 ~-~~~tR~aaL~WL~~L~~~~p~~~~~~l-~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~----~~~~F~-~fm~~LL~ 363 (680)
. ....|.+.+..+-.+....+.-..... ++.--.+.+++.+++ .++..+.+.++++++ ++.++. +++...+.
T Consensus 646 g~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls 724 (1133)
T KOG1943|consen 646 GQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLS 724 (1133)
T ss_pred chHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHH
Confidence 1 234566666666666655543222221 123334445556666 777788888888772 444444 48888888
Q ss_pred hhcccchhHHhHHHHHHHHHHhhcChh
Q 005727 364 NFRVDNSLLEKRGALIIRRLCVLLDAE 390 (680)
Q Consensus 364 lf~~d~~lLe~rg~~IIrqLc~~L~~e 390 (680)
...++..--+.|| +---+..++.|
T Consensus 725 ~~~~~~~~~~r~g---~~lal~~lp~~ 748 (1133)
T KOG1943|consen 725 RLTKCSEERIRRG---LILALGVLPSE 748 (1133)
T ss_pred HhcCchHHHHHHH---HHHHHccCcHH
Confidence 8877755334443 33334555543
No 48
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.00059 Score=82.03 Aligned_cols=388 Identities=13% Similarity=0.122 Sum_probs=245.9
Q ss_pred HHHHHHHHHHhhhhhhh----hhhhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc---c-----ch-hhhHHHH
Q 005727 8 LFEIIVEQFLLYADLFF----YSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR---G-----DF-IIFFNQI 74 (680)
Q Consensus 8 ~~~~~~~~~~~~~~~~~----~~~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~---~-----~i-l~~f~eI 74 (680)
.|++++-|....+|=|= +++.=...+-+.+...+. ..+..|-+.|.+|..++...+ + ++ ..+-...
T Consensus 490 ~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al~-~~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~Aknf 568 (1176)
T KOG1248|consen 490 LYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAALL-KRPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNF 568 (1176)
T ss_pred HHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHHh-cchHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHH
Confidence 68888888776555332 223323334444445544 445999999999988765531 1 11 2344556
Q ss_pred HHHHHHhhcCCChhHHHHHHH----HHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHH-HHHHHHHhhcCCchhh
Q 005727 75 FDALCKLSADSDANVQSAAHL----LDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQF-LVGWITVLDSVPDIDM 149 (680)
Q Consensus 75 fd~L~kL~aD~d~~Vr~gA~~----Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~-avswI~~L~sip~~~L 149 (680)
++.+++..+.+.+.-+..... |-...+++.+.+++--...+..-+.+...+.+..++.+ ..+.+..++.+.+..=
T Consensus 569 L~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~ 648 (1176)
T KOG1248|consen 569 LPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQT 648 (1176)
T ss_pred HHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhcccc
Confidence 677777655444332211111 22333344444443323333333333333443333322 3333433333222111
Q ss_pred hhchHHHHHHHHHhc-CCCChhHHHHHHHHHHHHHHHh--hcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 005727 150 LGFLPDFLDGLFNML-SDSSHEIRQQADSALWEFLQEI--KNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKL 226 (680)
Q Consensus 150 i~~Lp~~L~~Lf~lL-sD~~~dVR~~a~~~L~~fL~ei--~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l 226 (680)
-.+...++ .+.... +-.++.|++-+-..|+.++... .....-.++.|.+.|....++.....|..++.-+..+.+.
T Consensus 649 e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~ 727 (1176)
T KOG1248|consen 649 ESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKL 727 (1176)
T ss_pred chhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 11222222 222222 2246789988888888887651 0001125788899999999999999999999989999999
Q ss_pred cCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHH--HhccCCCCCC---ChHhHHHHHHHhcCCCcHHHHHHHHH
Q 005727 227 GGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELR--AIKADPADGF---DVGPILSIATRQLSSEWEATRIEALH 301 (680)
Q Consensus 227 ~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll--~~v~~~~~~l---dl~~iL~vL~~~L~~~~~~tR~aaL~ 301 (680)
.+.+...++|+.+|-++=++.+.+...|..|-++...+. +...+.++.. .+.+.+..+...+-++....+-+.+-
T Consensus 728 ~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Iv 807 (1176)
T KOG1248|consen 728 LSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIV 807 (1176)
T ss_pred ccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence 998999999999998888888888899999988887776 4443434333 45677888888876655444444466
Q ss_pred HHHHHHhhChhhH-hhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh------ccchHHHHHHHHHHhhcccchhHHh
Q 005727 302 WISTLLNRHRTEV-LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK------DLQHFRQLVVFLVHNFRVDNSLLEK 374 (680)
Q Consensus 302 WL~~L~~~~p~~~-~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~------~~~~F~~fm~~LL~lf~~d~~lLe~ 374 (680)
.+..++....+.+ .+++++++..+-..|.-.+++|++.|+..+...+. -.+|.+.+|+.++.+.++.+.-...
T Consensus 808 ai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~ 887 (1176)
T KOG1248|consen 808 AITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRK 887 (1176)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHH
Confidence 6666666665555 46788899999999999999999999998887773 2467888999999988876666666
Q ss_pred HHHHHHHHHHhhcChhhHHHHHH
Q 005727 375 RGALIIRRLCVLLDAERVYRELS 397 (680)
Q Consensus 375 rg~~IIrqLc~~L~~e~Iy~~La 397 (680)
+...++-.|+...+.+-+=..+.
T Consensus 888 Kvr~LlekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 888 KVRLLLEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHHHHHHhCHHHHHhhCH
Confidence 66778888888888855544333
No 49
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=0.00015 Score=82.28 Aligned_cols=271 Identities=18% Similarity=0.191 Sum_probs=176.0
Q ss_pred HHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccccH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchh--
Q 005727 73 QIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSI-EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID-- 148 (680)
Q Consensus 73 eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L-~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~-- 148 (680)
-+++.|..+..|.|.+||..| ++|=.+-+ .|.| ...-....+.+.|.+..||..|+..+.+..+..+..
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e-------g~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e 270 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSE-------GFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLE 270 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcc-------cccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCccc
Confidence 355558889999999999999 66544422 1222 224566678888999999999999999887765311
Q ss_pred ----hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhc-----CCCCHHHHHHHHHH
Q 005727 149 ----MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRA-----ASPDEFTRLTAITW 219 (680)
Q Consensus 149 ----Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~-----~s~d~~irl~Al~W 219 (680)
=....+.-+..++..+.|-+-.||..|.++|+.|-..-.. +=.+-+=+.++.+. .+.-+......-+|
T Consensus 271 ~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee---~i~QTLdKKlms~lRRkr~ahkrpk~l~s~Gew 347 (823)
T KOG2259|consen 271 RESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEE---IIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEW 347 (823)
T ss_pred chhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHH---HHHHHHHHHHhhhhhhhhhcccchHHHHhcCCc
Confidence 2457788899999999999999999999999988542211 00011111112211 11111111111112
Q ss_pred HHH--H-HHhc-------CcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCCh-HhHHHHHHHhc
Q 005727 220 INE--F-VKLG-------GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV-GPILSIATRQL 288 (680)
Q Consensus 220 L~e--~-~~l~-------~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl-~~iL~vL~~~L 288 (680)
=+- . .+++ ...++|. .-=.++...+.|+.-|+|.+|......|...- .++ ...+..|...|
T Consensus 348 SsGk~~~advpsee~d~~~~siI~s--GACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss------P~FA~~aldfLvDMf 419 (823)
T KOG2259|consen 348 SSGKEWNADVPSEEDDEEEESIIPS--GACGALVHGLEDEFYEVRRAAVASLCSLATSS------PGFAVRALDFLVDMF 419 (823)
T ss_pred ccCccccccCchhhccccccccccc--cccceeeeechHHHHHHHHHHHHHHHHHHcCC------CCcHHHHHHHHHHHh
Confidence 110 0 0000 0111110 11135566777888899999988776543221 223 46788999999
Q ss_pred CCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-hccchHHHHHHHHHHhhc
Q 005727 289 SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-KDLQHFRQLVVFLVHNFR 366 (680)
Q Consensus 289 ~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is-~~~~~F~~fm~~LL~lf~ 366 (680)
.|+-+.+|+.|+..|.++..+ ...-++.++.++++|.|.+.+||...-++|..-- +..+-+...+.+|++.+.
T Consensus 420 NDE~~~VRL~ai~aL~~Is~~-----l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~ 493 (823)
T KOG2259|consen 420 NDEIEVVRLKAIFALTMISVH-----LAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDMCVAHLLKNLG 493 (823)
T ss_pred ccHHHHHHHHHHHHHHHHHHH-----heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Confidence 999999999999999999988 3566788999999999999999998888777533 344556677777766553
No 50
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=98.32 E-value=1.6e-05 Score=92.60 Aligned_cols=191 Identities=19% Similarity=0.260 Sum_probs=151.9
Q ss_pred HHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhcc---c---------cccHhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 005727 72 NQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTES---D---------QFSIEEFIPLLRERMNVLNPYVRQFLVGWIT 139 (680)
Q Consensus 72 ~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkdiv~es---~---------~f~L~~fIP~L~e~i~~~np~vR~~avswI~ 139 (680)
.++...|..++++++.. ..+|.+++=+.+|.-.-. + ++--..++|.|.+.+.+..-..|-..+..+.
T Consensus 814 ~~ia~klld~Ls~~~~g-~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 814 SEIAEKLLDLLSGPSTG-SPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALS 892 (1030)
T ss_pred chHHHHHHHhcCCcccc-chHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHH
Confidence 46677777777775432 222355555555443311 1 1223567899999998777778887777777
Q ss_pred -HhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCC---HHHHHH
Q 005727 140 -VLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD---EFTRLT 215 (680)
Q Consensus 140 -~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d---~~irl~ 215 (680)
++..+|..-+.+.+|.+++-|++.++=++.+||..+.+++..++.+-..-..-|++.++|+++.--.+.+ -.+|..
T Consensus 893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ 972 (1030)
T KOG1967|consen 893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVRED 972 (1030)
T ss_pred HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHH
Confidence 4556888889999999999999999999999999999999999987766556689999999999888777 468999
Q ss_pred HHHHHHHHHH-hcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHH
Q 005727 216 AITWINEFVK-LGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEE 263 (680)
Q Consensus 216 Al~WL~e~~~-l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~ 263 (680)
|+.-++.+.+ .+...+.||-|+++.+|.|+|.|...-+|+.|.++.+.
T Consensus 973 ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 973 ALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 9999998888 78889999999999999999999999999999988764
No 51
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.0002 Score=82.60 Aligned_cols=308 Identities=17% Similarity=0.159 Sum_probs=161.9
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHH-----------
Q 005727 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKD----------- 102 (680)
Q Consensus 35 ~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkd----------- 102 (680)
-.|-.|..|+.+.||+.|+.|+-.+ .+-+ ..+-.++.+.+-+|++|.++-|-.+| .+.+..+-+
T Consensus 146 lAIk~~~~D~s~yVRk~AA~AIpKL---YsLd-~e~k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHknyrk 221 (968)
T KOG1060|consen 146 LAIKKAVTDPSPYVRKTAAHAIPKL---YSLD-PEQKDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRK 221 (968)
T ss_pred HHHHHHhcCCcHHHHHHHHHhhHHH---hcCC-hhhHHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHH
Confidence 5566788899999999998886332 2211 12234788888899999999998887 444321110
Q ss_pred ---Hhhc-----------------------c----------c------------------cccHhhhHHHHHHHhcCCCH
Q 005727 103 ---IVTE-----------------------S----------D------------------QFSIEEFIPLLRERMNVLNP 128 (680)
Q Consensus 103 ---iv~e-----------------------s----------~------------------~f~L~~fIP~L~e~i~~~np 128 (680)
+..+ . + ..++..++.-..-.+++.||
T Consensus 222 lC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~ 301 (968)
T KOG1060|consen 222 LCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNP 301 (968)
T ss_pred HHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCc
Confidence 0000 0 0 23455666666667778888
Q ss_pred HHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCC-----------------
Q 005727 129 YVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS----------------- 191 (680)
Q Consensus 129 ~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~----------------- 191 (680)
.|-..+++..+.++.... .-.|.+.|.++|. .+++||..+-.++..+...-+.-..
T Consensus 302 sVVmA~aql~y~lAP~~~------~~~i~kaLvrLLr-s~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk 374 (968)
T KOG1060|consen 302 SVVMAVAQLFYHLAPKNQ------VTKIAKALVRLLR-SNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVK 374 (968)
T ss_pred HHHHHHHhHHHhhCCHHH------HHHHHHHHHHHHh-cCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHH
Confidence 888888887777764432 3345666666554 4557776665555544332221111
Q ss_pred -------------CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHH
Q 005727 192 -------------VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVAR 258 (680)
Q Consensus 192 -------------~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~ 258 (680)
-++..|+.-+...+.++|..+...++..|+.+....+ ..-+.+|.+++..|+..+.-|-..|.
T Consensus 375 ~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~----sv~~tCL~gLv~Llsshde~Vv~eaV 450 (968)
T KOG1060|consen 375 ILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG----SVTDTCLNGLVQLLSSHDELVVAEAV 450 (968)
T ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC----chhhHHHHHHHHHHhcccchhHHHHH
Confidence 1223333333334444454455555556655443333 22556666666666655544444443
Q ss_pred HHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHH
Q 005727 259 ETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVL 338 (680)
Q Consensus 259 ~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~ 338 (680)
.+...+++.- ......++..|...+.+-..+.-.|++.||..-+-.- +....++++-.+.++++|+.++|+-
T Consensus 451 ~vIk~Llq~~-----p~~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~---vpri~PDVLR~laksFs~E~~evKl 522 (968)
T KOG1060|consen 451 VVIKRLLQKD-----PAEHLEILFQLARLLDTILVPAARAGIIWLIGEYCEI---VPRIAPDVLRKLAKSFSDEGDEVKL 522 (968)
T ss_pred HHHHHHHhhC-----hHHHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhh---cchhchHHHHHHHHhhccccchhhH
Confidence 3333322221 1112335555555554444555556666654221111 2223444555566666666666666
Q ss_pred HHHHHHHHHh-hccchHHHHHHHHHHhh
Q 005727 339 LVLEVHACIA-KDLQHFRQLVVFLVHNF 365 (680)
Q Consensus 339 ~al~lLa~Is-~~~~~F~~fm~~LL~lf 365 (680)
..+.+-+++- .+...++...+-.+.+-
T Consensus 523 QILnL~aKLyl~~~~~~kll~~Yv~~L~ 550 (968)
T KOG1060|consen 523 QILNLSAKLYLTNIDQTKLLVQYVFELA 550 (968)
T ss_pred HHHHhhhhheEechhhHHHHHHHHHHHh
Confidence 6665555433 23333444444444433
No 52
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=0.0018 Score=78.10 Aligned_cols=284 Identities=17% Similarity=0.183 Sum_probs=175.3
Q ss_pred HHHHHHHHHhhcCCChhHHHH--HHHHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchh-
Q 005727 72 NQIFDALCKLSADSDANVQSA--AHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID- 148 (680)
Q Consensus 72 ~eIfd~L~kL~aD~d~~Vr~g--A~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~- 148 (680)
..+.+....+.+|.|.+++.= +..||-++.-...+... ++..+-...-+.-+..++.++.-+-..+..+...|..+
T Consensus 611 ~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~-~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~ 689 (1176)
T KOG1248|consen 611 GSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTES-QVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEG 689 (1176)
T ss_pred HHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccch-hHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhh
Confidence 455666666777777554432 23445444322222111 12222222223334557888888888888887775432
Q ss_pred -hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCC--hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-
Q 005727 149 -MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD--YGRMAEILVQRAASPDEFTRLTAITWINEFV- 224 (680)
Q Consensus 149 -Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d--~~~II~iLl~~~~s~d~~irl~Al~WL~e~~- 224 (680)
...++.++...|+.-+.+...-+|.....||..+++..... +.+ ...|.++++.. .+.+...|..|..-|.++.
T Consensus 690 ~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e-~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~ 767 (1176)
T KOG1248|consen 690 LVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAE-HCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGA 767 (1176)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHH
Confidence 23456666666666666677778888899999998876421 122 34455555555 7777777777766555554
Q ss_pred -Hh---cC-----cccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCC---hHhHHHHHHHhcCCCc
Q 005727 225 -KL---GG-----DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD---VGPILSIATRQLSSEW 292 (680)
Q Consensus 225 -~l---~~-----~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ld---l~~iL~vL~~~L~~~~ 292 (680)
+. .| ..+-+|++.|-++ +. +++.+..|.. .-.+...+.+..+.+| +..+++.+...+.+.+
T Consensus 768 i~~~~d~g~e~~~~~lnefl~~Isag----l~--gd~~~~~as~-Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~s 840 (1176)
T KOG1248|consen 768 IQSSLDDGNEPASAILNEFLSIISAG----LV--GDSTRVVASD-IVAITHILQEFKNILDDETLEKLISMVCLYLASNS 840 (1176)
T ss_pred HHhhhcccccchHHHHHHHHHHHHhh----hc--ccHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCC
Confidence 21 12 1233444444444 32 2334444442 1111122222222222 5788889999999999
Q ss_pred HHHHHHHHHHHHHHHhhChhhH-hhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhh
Q 005727 293 EATRIEALHWISTLLNRHRTEV-LHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--DLQHFRQLVVFLVHNF 365 (680)
Q Consensus 293 ~~tR~aaL~WL~~L~~~~p~~~-~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~--~~~~F~~fm~~LL~lf 365 (680)
.+++.+|+..+.++..+.|+.+ .+|.+.++|.++..+.|-.-.+|.++-.++.++.. +-++++.|++......
T Consensus 841 reI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~kl 916 (1176)
T KOG1248|consen 841 REIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKL 916 (1176)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHH
Confidence 9999999999999999999985 78999999999998888899999999988888773 4455666666444433
No 53
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=9.8e-05 Score=78.74 Aligned_cols=222 Identities=22% Similarity=0.212 Sum_probs=138.8
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHHhh--ccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHH------HHh
Q 005727 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVV--RGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVK------DIV 104 (680)
Q Consensus 34 v~~VL~~l~D~d~rVR~~A~eaL~nI~kv~--~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllk------div 104 (680)
+|-+...+...|..||||+|.++.||+--. +.-....=|.+.++|..++.|+++.||--| .+|..+.- +|+
T Consensus 210 lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv 289 (550)
T KOG4224|consen 210 LPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIV 289 (550)
T ss_pred chhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHH
Confidence 456667778889999999999999996332 222223346799999999999999999877 55655432 233
Q ss_pred hccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHH
Q 005727 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSS-HEIRQQADSALWEFL 183 (680)
Q Consensus 105 ~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~-~dVR~~a~~~L~~fL 183 (680)
+.+ =+|.+.+.++++--..-..-+.+|.++.-.|..+..-.=-.|+++|.++|.-.+ .+++-+|...|..+.
T Consensus 290 -~ag------~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLA 362 (550)
T KOG4224|consen 290 -EAG------SLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLA 362 (550)
T ss_pred -hcC------CchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHh
Confidence 223 267777777554433334456677766655554444344468999999997654 458888878888776
Q ss_pred HHhhcCCCC-ChHHHHHHHHHhcCCCCHHHHH--HHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHH
Q 005727 184 QEIKNSPSV-DYGRMAEILVQRAASPDEFTRL--TAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARET 260 (680)
Q Consensus 184 ~ei~~~~~~-d~~~II~iLl~~~~s~d~~irl--~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~ 260 (680)
..-+....+ -=..-|+.++.-+.+..-++|. .++...-.+.+..++.+.. ..++|+++|...+...|+|.-|..+
T Consensus 363 asse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld--~gi~~iLIp~t~s~s~Ev~gNaAaA 440 (550)
T KOG4224|consen 363 ASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLD--SGIIPILIPWTGSESEEVRGNAAAA 440 (550)
T ss_pred hhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhh--cCCcceeecccCccchhhcccHHHH
Confidence 544322111 0122344444444444444443 3333332233333334332 3788999999999999999877776
Q ss_pred HHHH
Q 005727 261 NEEL 264 (680)
Q Consensus 261 n~~L 264 (680)
...+
T Consensus 441 L~Nl 444 (550)
T KOG4224|consen 441 LINL 444 (550)
T ss_pred HHhh
Confidence 6543
No 54
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.0014 Score=75.94 Aligned_cols=401 Identities=17% Similarity=0.207 Sum_probs=246.2
Q ss_pred hHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHHH-HHHHHHH---HHhhccc
Q 005727 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAH-LLDRLVK---DIVTESD 108 (680)
Q Consensus 33 Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA~-~Ldrllk---div~es~ 108 (680)
.++.++.-+.|+++.+|--|...+.-+ .+-..+.-+++.|.++..|.++-||..|. ...++.. +++...|
T Consensus 87 avnt~~kD~~d~np~iR~lAlrtm~~l------~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~g 160 (734)
T KOG1061|consen 87 AVNTFLKDCEDPNPLIRALALRTMGCL------RVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSG 160 (734)
T ss_pred hhhhhhccCCCCCHHHHHHHhhceeeE------eehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccc
Confidence 347788999999999999887665322 11123456889999999999999999883 3333322 3333333
Q ss_pred cccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhh
Q 005727 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK 187 (680)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~-~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~ 187 (680)
|++.|...+.|.||.|-..|+..+..+....+ ......-+.+...+...+++-+.=-+-. .|+.+..-.+
T Consensus 161 ------l~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~---IL~~l~~y~p 231 (734)
T KOG1061|consen 161 ------LVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIF---ILDCLAEYVP 231 (734)
T ss_pred ------hhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHH---HHHHHHhcCC
Confidence 89999999999999999999999999877554 4666677788888887776655444433 3444544443
Q ss_pred cCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHh
Q 005727 188 NSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAI 267 (680)
Q Consensus 188 ~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~ 267 (680)
+. +.+...|++-+..++++.++.+.+.+..-+-.++..-+..-.-++-++-|.++..++.. +++.-+|.+-...+...
T Consensus 232 ~d-~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~-~e~qyvaLrNi~lil~~ 309 (734)
T KOG1061|consen 232 KD-SREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSE-SEIQYVALRNINLILQK 309 (734)
T ss_pred CC-chhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeeccc-chhhHHHHhhHHHHHHh
Confidence 32 34678899999999999988877777665544433322211122334444444444433 37666665422221111
Q ss_pred ccCCCCCCChHhHHHHHHHhcC---CCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005727 268 KADPADGFDVGPILSIATRQLS---SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVH 344 (680)
Q Consensus 268 v~~~~~~ldl~~iL~vL~~~L~---~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lL 344 (680)
.+.++..-...|. ++..-++..-++-+..++... -+.++++.+..--.+-+.+.++++.+++
T Consensus 310 ---------~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~------nl~qvl~El~eYatevD~~fvrkaIrai 374 (734)
T KOG1061|consen 310 ---------RPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDA------NLAQVLAELKEYATEVDVDFVRKAVRAI 374 (734)
T ss_pred ---------ChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHh------HHHHHHHHHHHhhhhhCHHHHHHHHHHh
Confidence 2445555555553 445557777787777777653 3445667777777788889999999999
Q ss_pred HHHhh-ccchHHHHHHHHHHhhccc-chhHHhHHHHHHHHHHhhcCh--hhHHHHHHHhhcccCChhHHHHHHHHHHHHH
Q 005727 345 ACIAK-DLQHFRQLVVFLVHNFRVD-NSLLEKRGALIIRRLCVLLDA--ERVYRELSTILEGEADLDFACTMVQALNLIL 420 (680)
Q Consensus 345 a~Is~-~~~~F~~fm~~LL~lf~~d-~~lLe~rg~~IIrqLc~~L~~--e~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iL 420 (680)
++++- -++. ...+..||+.+... .-..+++ -.+||.+-...+. |.|...+...++.-.|-+- =..++||+
T Consensus 375 g~~aik~e~~-~~cv~~lLell~~~~~yvvqE~-~vvi~dilRkyP~~~~~vv~~l~~~~~sl~epea----k~amiWil 448 (734)
T KOG1061|consen 375 GRLAIKAEQS-NDCVSILLELLETKVDYVVQEA-IVVIRDILRKYPNKYESVVAILCENLDSLQEPEA----KAALIWIL 448 (734)
T ss_pred hhhhhhhhhh-hhhHHHHHHHHhhcccceeeeh-hHHHHhhhhcCCCchhhhhhhhcccccccCChHH----HHHHHHHH
Confidence 99883 2233 77888888888744 2333443 5678887777765 4555555555554333221 22445554
Q ss_pred h-chHHHHHHHHHHhhccCCcchHHHHHHHHHHhccChhHHHHHHHHhhhhHHHHHHHHHHhhcCcchhhHHh
Q 005727 421 L-TSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQ 492 (680)
Q Consensus 421 L-Ta~EL~~lR~~L~~~l~~~~~~~lF~~L~~~w~~n~v~~~slcll~~~Y~~a~~ll~~~~~~~~~~~~l~q 492 (680)
= .+..+ ++..+++..+.+.| +.-.+.+-+-||+. +++-|....-+-+.++|
T Consensus 449 g~y~~~i-------------~~a~elL~~f~en~-~dE~~~Vql~LLta-------~ik~Fl~~p~~tq~~l~ 500 (734)
T KOG1061|consen 449 GEYAERI-------------ENALELLESFLENF-KDETAEVQLELLTA-------AIKLFLKKPTETQELLQ 500 (734)
T ss_pred hhhhhcc-------------CcHHHHHHHHHhhc-ccchHHHHHHHHHH-------HHHHHhcCCccHHHHHH
Confidence 1 11111 22334444444445 23335666666654 45555555444444444
No 55
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.17 E-value=0.00048 Score=82.63 Aligned_cols=283 Identities=22% Similarity=0.180 Sum_probs=175.8
Q ss_pred hhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc----cchhhhHHHHHHHHHHhhcC-CChhHHHHH-HHHHHHH
Q 005727 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR----GDFIIFFNQIFDALCKLSAD-SDANVQSAA-HLLDRLV 100 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~----~~il~~f~eIfd~L~kL~aD-~d~~Vr~gA-~~Ldrll 100 (680)
+.-++.|+|-++.++.|++++||..|.++|..+....+ .+...+-.=|||.|-.+..| ....||-+= ..|..++
T Consensus 457 e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA 536 (1431)
T KOG1240|consen 457 EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLA 536 (1431)
T ss_pred HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHH
Confidence 55688899999999999999999999999877644333 23334555689999999999 555666443 5566666
Q ss_pred HHHhhccccccHhhhHHHHHH---H--hcCCCHHHHHHHHHHHHHhhcCCchhhhhchH----HHHHHHHHhcCCCChhH
Q 005727 101 KDIVTESDQFSIEEFIPLLRE---R--MNVLNPYVRQFLVGWITVLDSVPDIDMLGFLP----DFLDGLFNMLSDSSHEI 171 (680)
Q Consensus 101 kdiv~es~~f~L~~fIP~L~e---~--i~~~np~vR~~avswI~~L~sip~~~Li~~Lp----~~L~~Lf~lLsD~~~dV 171 (680)
|.... |...-++ . .+++|.+ ..+....-.++. .+-+....+++|+.+-|
T Consensus 537 ~tA~r---------Fle~~q~~~~~g~~n~~nse-------------t~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~V 594 (1431)
T KOG1240|consen 537 KTAYR---------FLELTQELRQAGMLNDPNSE-------------TAPEQNYNTELQALHHTVEQMVSSLLSDSPPIV 594 (1431)
T ss_pred HHHHH---------HHHHHHHHHhcccccCcccc-------------cccccccchHHHHHHHHHHHHHHHHHcCCchHH
Confidence 63332 2222221 1 1223322 112222222333 33334457899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HhcCcccccchHhHHHHHhhhhcCCc
Q 005727 172 RQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFV-KLGGDQLVPYYADILGAILPCISDKE 250 (680)
Q Consensus 172 R~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~-~l~~~~l~pfLp~LLp~LL~~Lsds~ 250 (680)
|++--+.+..++.-+++. ..=+-|+..|+..+.+.|+..|-.-.+-|.-+. -++....- .-++|.+...++|.+
T Consensus 595 kr~Lle~i~~LC~FFGk~--ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~s---eyllPLl~Q~ltD~E 669 (1431)
T KOG1240|consen 595 KRALLESIIPLCVFFGKE--KSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVS---EYLLPLLQQGLTDGE 669 (1431)
T ss_pred HHHHHHHHHHHHHHhhhc--ccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHH---HHHHHHHHHhccCcc
Confidence 988767777777766543 233457888889999998887764332221110 01121122 347899999999999
Q ss_pred hhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh---------hHhhhhHHH
Q 005727 251 EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT---------EVLHFLNDI 321 (680)
Q Consensus 251 ~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~---------~~~~~l~~l 321 (680)
+-+-..|..+...|.+.-- -....+-+++.-+.-.|-+++..+|.+++..+.++++.... -+.||++.-
T Consensus 670 E~Viv~aL~~ls~Lik~~l--l~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~~~ 747 (1431)
T KOG1240|consen 670 EAVIVSALGSLSILIKLGL--LRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLERP 747 (1431)
T ss_pred hhhHHHHHHHHHHHHHhcc--cchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhhcc
Confidence 9888777777665544310 00111344555555566789988999999999998887543 334444422
Q ss_pred H------HHHHHhcCCCC-HHHHH
Q 005727 322 F------DTLLKALSDPS-DEVVL 338 (680)
Q Consensus 322 ~------p~LL~~LsD~s-~eV~~ 338 (680)
+ +.|+.++.+|- .+|..
T Consensus 748 v~~i~s~~~LlsclkpPVsRsv~~ 771 (1431)
T KOG1240|consen 748 VIQIESKEVLLSCLKPPVSRSVFN 771 (1431)
T ss_pred HhhhcchHHHHHHhcCCCcHHHHH
Confidence 2 35888888884 34443
No 56
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.0031 Score=73.19 Aligned_cols=326 Identities=17% Similarity=0.192 Sum_probs=193.4
Q ss_pred HHHHHHH-HHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccccHhh-hHHHHHHHhcCCCHH
Q 005727 53 CEALYNI-AKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEE-FIPLLRERMNVLNPY 129 (680)
Q Consensus 53 ~eaL~nI-~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L~~-fIP~L~e~i~~~np~ 129 (680)
+|||..| +-+++|.. ..+.|+++.|.++..+..||+-. --|-|..+.-. ++.. =|..++..++|+|+-
T Consensus 53 leAmKRIia~iA~G~d---vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqp------dLALLSIntfQk~L~DpN~L 123 (968)
T KOG1060|consen 53 LEAMKRIIALIAKGKD---VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQP------DLALLSINTFQKALKDPNQL 123 (968)
T ss_pred HHHHHHHHHHHhcCCc---HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCC------CceeeeHHHHHhhhcCCcHH
Confidence 5677665 34467654 35678888999999999999988 44556544221 1111 277889999999999
Q ss_pred HHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHhcCCC
Q 005727 130 VRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV-DYGRMAEILVQRAASP 208 (680)
Q Consensus 130 vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~-d~~~II~iLl~~~~s~ 208 (680)
+|.+|+..+.-+- +-..-|-.+-.+-+..+|+++-||+.|+.++-.+-. . ++ +.+.+++++=.-+.+.
T Consensus 124 iRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-L----d~e~k~qL~e~I~~LLaD~ 192 (968)
T KOG1060|consen 124 IRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-L----DPEQKDQLEEVIKKLLADR 192 (968)
T ss_pred HHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-C----ChhhHHHHHHHHHHHhcCC
Confidence 9999977665321 223456677788899999999999999988777643 1 11 2234444444444555
Q ss_pred CHHHHHHHHHHHHHHHHhcCccc---ccc---hHhHHH--------HHhhhh--------cC------------------
Q 005727 209 DEFTRLTAITWINEFVKLGGDQL---VPY---YADILG--------AILPCI--------SD------------------ 248 (680)
Q Consensus 209 d~~irl~Al~WL~e~~~l~~~~l---~pf---Lp~LLp--------~LL~~L--------sd------------------ 248 (680)
++.|.-.|+....+. +|+.+ -++ +-+++| .++.+| .+
T Consensus 193 splVvgsAv~AF~ev---CPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~ 269 (968)
T KOG1060|consen 193 SPLVVGSAVMAFEEV---CPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLK 269 (968)
T ss_pred CCcchhHHHHHHHHh---chhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCccccccc
Confidence 544433333222221 11110 000 000000 000000 00
Q ss_pred --------C---chhHHHHHHHHHHHHHH-------hccC----CCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHH
Q 005727 249 --------K---EEKIRVVARETNEELRA-------IKAD----PADGFDVGPILSIATRQLSSEWEATRIEALHWISTL 306 (680)
Q Consensus 249 --------s---~~eIR~~A~~~n~~Ll~-------~v~~----~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L 306 (680)
+ ++++|..-+.++-.+.. .+.. -+-..+...+++.|.+.|.+ +.++|.-+|+-+..+
T Consensus 270 ~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~ 348 (968)
T KOG1060|consen 270 DKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRLLRS-NREVQYVVLQNIATI 348 (968)
T ss_pred ccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHHHhc-CCcchhhhHHHHHHH
Confidence 0 23333222222111100 0000 00011356778888886664 556899999999999
Q ss_pred HhhChhhHhhhhHHHH------------------------------HHHHHhcCCCCHHHHHHHHHHHHHHhhc-cchHH
Q 005727 307 LNRHRTEVLHFLNDIF------------------------------DTLLKALSDPSDEVVLLVLEVHACIAKD-LQHFR 355 (680)
Q Consensus 307 ~~~~p~~~~~~l~~l~------------------------------p~LL~~LsD~s~eV~~~al~lLa~Is~~-~~~F~ 355 (680)
..+.|.-+.||+...| +.+..-.++++-+++..|.+++++-++. ..-=+
T Consensus 349 s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~ 428 (968)
T KOG1060|consen 349 SIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIGSVTD 428 (968)
T ss_pred HhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhCchhh
Confidence 9999998888876433 2222223344446777888888887743 33445
Q ss_pred HHHHHHHHhhcccchhHHhHHHHHHHHHHhhcChhh--HHHHHHHhhcc
Q 005727 356 QLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAER--VYRELSTILEG 402 (680)
Q Consensus 356 ~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~e~--Iy~~La~iL~~ 402 (680)
..|.+|+.++++.....-.-...+||.|-..=++++ |...+++.+..
T Consensus 429 tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldt 477 (968)
T KOG1060|consen 429 TCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDT 477 (968)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhh
Confidence 689999999976544333345778999988888877 88899988854
No 57
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.013 Score=67.68 Aligned_cols=84 Identities=23% Similarity=0.245 Sum_probs=68.0
Q ss_pred HHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhh
Q 005727 72 NQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDML 150 (680)
Q Consensus 72 ~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li 150 (680)
.++.+-+..+++.+-+=||.-| ..|.+.+--... ++....|.|.|.+.|+||.|-..||+-|--|+..+|.+.+
T Consensus 143 RDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe-----Alr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPE-----ALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhH-----hHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 4677777888888999899888 666666543332 3566799999999999999999999999999999998888
Q ss_pred hchHHHHHHH
Q 005727 151 GFLPDFLDGL 160 (680)
Q Consensus 151 ~~Lp~~L~~L 160 (680)
+.-|.|+.-+
T Consensus 218 ~LAP~ffkll 227 (877)
T KOG1059|consen 218 QLAPLFYKLL 227 (877)
T ss_pred cccHHHHHHH
Confidence 8777776633
No 58
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.03 E-value=0.0017 Score=70.05 Aligned_cols=245 Identities=24% Similarity=0.244 Sum_probs=168.8
Q ss_pred hhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhc-CCChhHHHHH-HHHHHHHHHHhhccc
Q 005727 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSA-DSDANVQSAA-HLLDRLVKDIVTESD 108 (680)
Q Consensus 31 ~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~a-D~d~~Vr~gA-~~Ldrllkdiv~es~ 108 (680)
...++++...+.|.++.||..|..++.++. .++..+.|.+++. |++..||..| ..|.++ ..+
T Consensus 73 ~~av~~l~~~l~d~~~~vr~~a~~aLg~~~----------~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~----~~~-- 136 (335)
T COG1413 73 EEAVPLLRELLSDEDPRVRDAAADALGELG----------DPEAVPPLVELLENDENEGVRAAAARALGKL----GDE-- 136 (335)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhc----Cch--
Confidence 557799999999999999999998776542 2456666777665 8999999988 555543 111
Q ss_pred cccHhhhHHHHHHHhcCCC----------H--HHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHH
Q 005727 109 QFSIEEFIPLLRERMNVLN----------P--YVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQAD 176 (680)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~n----------p--~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~ 176 (680)
. -++.+.+.+.+.+ + .+|..++..+..+- -|...+.+...+.|++.+||..+.
T Consensus 137 -~----a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~----------~~~~~~~l~~~l~~~~~~vr~~Aa 201 (335)
T COG1413 137 -R----ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELG----------DPEAIPLLIELLEDEDADVRRAAA 201 (335)
T ss_pred -h----hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcC----------ChhhhHHHHHHHhCchHHHHHHHH
Confidence 1 1444444454433 2 57777777776433 345566778899999999999999
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHH
Q 005727 177 SALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVV 256 (680)
Q Consensus 177 ~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~ 256 (680)
.+|+...... ..+.+.+.....+++..+|..++.-++.. . ..+-.+.+...+.+.+..++..
T Consensus 202 ~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~------~----~~~~~~~l~~~l~~~~~~~~~~ 263 (335)
T COG1413 202 SALGQLGSEN--------VEAADLLVKALSDESLEVRKAALLALGEI------G----DEEAVDALAKALEDEDVILALL 263 (335)
T ss_pred HHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHHHHHhccc------C----cchhHHHHHHHHhccchHHHHH
Confidence 8888776422 46778888889999999999888766532 1 3456677778888888777766
Q ss_pred HHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHH
Q 005727 257 ARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEV 336 (680)
Q Consensus 257 A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV 336 (680)
+....+ ..+...-...+...+.+..+..|..+..-++.+.... -...++....+....+
T Consensus 264 ~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~a~~~~~~~~~~~~ 322 (335)
T COG1413 264 AAAALG-----------ALDLAEAALPLLLLLIDEANAVRLEAALALGQIGQEK----------AVAALLLALEDGDADV 322 (335)
T ss_pred HHHHhc-----------ccCchhhHHHHHHHhhcchhhHHHHHHHHHHhhcccc----------hHHHHHHHhcCCchhh
Confidence 555543 1223344455666677777888888887777776655 3445556666666777
Q ss_pred HHHHHHHHH
Q 005727 337 VLLVLEVHA 345 (680)
Q Consensus 337 ~~~al~lLa 345 (680)
+..+.....
T Consensus 323 ~~~~~~~~~ 331 (335)
T COG1413 323 RKAALILLE 331 (335)
T ss_pred HHHHHHHHH
Confidence 766655544
No 59
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=98.02 E-value=0.017 Score=68.26 Aligned_cols=436 Identities=15% Similarity=0.171 Sum_probs=227.3
Q ss_pred hHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhcccccc
Q 005727 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFS 111 (680)
Q Consensus 33 Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~ 111 (680)
|.+..+..+.|++.++|..++.++..|+ .-.....|+|+++.+.+++++.+.+--.|| +.|+.+..|...+...+.
T Consensus 91 IRe~Ll~~l~~sn~ki~~~vay~is~Ia---~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ev~~ee~~~~ 167 (1005)
T KOG2274|consen 91 IREQLLNLLDDSNSKIRSAVAYAISSIA---AVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSDEVDVEEMFFV 167 (1005)
T ss_pred HHHHHHhhhhccccccchHHHHHHHHHH---hccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 4466677777999999999998876665 334446799999999999999988888889 899999888875533232
Q ss_pred HhhhHHHHHHHh---cCCCHHHHHHHH------HHHHHhhcCCchh-------hhhchHHHHHHHHHhcCCCCh---hHH
Q 005727 112 IEEFIPLLRERM---NVLNPYVRQFLV------GWITVLDSVPDID-------MLGFLPDFLDGLFNMLSDSSH---EIR 172 (680)
Q Consensus 112 L~~fIP~L~e~i---~~~np~vR~~av------swI~~L~sip~~~-------Li~~Lp~~L~~Lf~lLsD~~~---dVR 172 (680)
.+.-+|....-+ ...+-..|..++ ++...+....... +...++.|++.+-..++=++. -.|
T Consensus 168 ~~~~l~~m~~~f~~~~~~s~~~~~~aa~~~lf~sc~~li~~~~e~~~~~~~~~~s~~l~~~~~~l~h~l~~~~g~~~~~~ 247 (1005)
T KOG2274|consen 168 GPVSLAEMYRIFALTIVYSIITRLGAARGKLFTSCLTLITNVEEVWAEHVKVFLSQILNQFMDILEHPLQRNDGSDFSLR 247 (1005)
T ss_pred cccchhhhhhhhhhccccchhHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHH
Confidence 222333322222 233333443333 1222222221111 345566666666554433322 356
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHH------------HHHHhcCCC----------CHHHH------HHHHHHHHHHH
Q 005727 173 QQADSALWEFLQEIKNSPSVDYGRMAE------------ILVQRAASP----------DEFTR------LTAITWINEFV 224 (680)
Q Consensus 173 ~~a~~~L~~fL~ei~~~~~~d~~~II~------------iLl~~~~s~----------d~~ir------l~Al~WL~e~~ 224 (680)
.....++..+...++....+.+..+.+ ++.....+. +++.. ...++.++.++
T Consensus 248 ~eilk~~t~l~~nfp~~~~~~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i~eF~s~i~ 327 (1005)
T KOG2274|consen 248 MEILKCLTQLVENFPSLINPFMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQIVEFLSTIV 327 (1005)
T ss_pred HHHHHHHHHHHHhhHHhhhHHHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhhhHHHHHHHHH
Confidence 777788888887776543332222222 222222211 12211 12233444333
Q ss_pred Hhc--CcccccchHhHHHHHhhhhcCCchh------------------------HHHHHHHHHHHHHHhccCCCCCCChH
Q 005727 225 KLG--GDQLVPYYADILGAILPCISDKEEK------------------------IRVVARETNEELRAIKADPADGFDVG 278 (680)
Q Consensus 225 ~l~--~~~l~pfLp~LLp~LL~~Lsds~~e------------------------IR~~A~~~n~~Ll~~v~~~~~~ldl~ 278 (680)
+.. ...+..-+|++++.+.--+.-++.. +|..+.+.+. ..++.+ ..
T Consensus 328 t~~~~~~ti~~~l~~lI~~~v~y~Qlseeqie~w~sD~~~fV~dEd~~~~~~~~~rd~~~~v~~----~f~~~~----i~ 399 (1005)
T KOG2274|consen 328 TNRFLSKTIKKNLPELIYQLVAYLQLSEEQIEVWTSDVNQFVADEDDGYTARISVRDLLLEVIT----TFGNEG----IN 399 (1005)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHhccHHHhhccCCCCchhhhhHHHHHHHHHH----hccchh----hh
Confidence 321 1122223555555443333222111 1222211111 111111 12
Q ss_pred hHHHHHHHhc---------CCCc-HHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcC-CCCHHHHHHHHHHHHHH
Q 005727 279 PILSIATRQL---------SSEW-EATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS-DPSDEVVLLVLEVHACI 347 (680)
Q Consensus 279 ~iL~vL~~~L---------~~~~-~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~Ls-D~s~eV~~~al~lLa~I 347 (680)
.+..+..+++ ..++ |....+.+.|........ ....++..++-.+...+. .++|.....+.|+++++
T Consensus 400 ~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~--~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~f 477 (1005)
T KOG2274|consen 400 PIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDD--ANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKF 477 (1005)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCc--chHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHH
Confidence 3333333333 3333 335666667766666221 123444445545554443 55788888999999998
Q ss_pred hh----ccchHHHHHHHHHHhhcccch-hHHhHHHHHHHHHHhhcChhhHHHHHHHhh-------cccCChhHHHHHHHH
Q 005727 348 AK----DLQHFRQLVVFLVHNFRVDNS-LLEKRGALIIRRLCVLLDAERVYRELSTIL-------EGEADLDFACTMVQA 415 (680)
Q Consensus 348 s~----~~~~F~~fm~~LL~lf~~d~~-lLe~rg~~IIrqLc~~L~~e~Iy~~La~iL-------~~~~Dl~F~~~mVq~ 415 (680)
++ +.+.+..|+...+.....+.+ ... --++|.+|--.+.+-+-..+..|| .+.+ -+.....+.+
T Consensus 478 s~~~~~~~~~~~~fl~~~v~~l~~~~~~~~k---i~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s-~evl~llmE~ 553 (1005)
T KOG2274|consen 478 SSSTVINPQLLQHFLNATVNALTMDVPPPVK---ISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSS-DEVLVLLMEA 553 (1005)
T ss_pred HhhhccchhHHHHHHHHHHHhhccCCCCchh---HHHHHHHHhccCceeccccchHHHHHHHHHccccc-HHHHHHHHHH
Confidence 85 567888899999998866533 222 335666665555533333333333 2211 1344455666
Q ss_pred HHHHHhchHHH-HHHHHHHhhccCCcchHHHHHHHHHHhccChhHHHHHHHHhhhhHHHHHHHHHHhhcCcchhhHHh--
Q 005727 416 LNLILLTSSEL-SELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQ-- 492 (680)
Q Consensus 416 Ln~iLLTa~EL-~~lR~~L~~~l~~~~~~~lF~~L~~~w~~n~v~~~slcll~~~Y~~a~~ll~~~~~~~~~~~~l~q-- 492 (680)
|+...--.||. +.... ...+++..+|-..+-.|+. -+.|.++++.+...+.+.+-+.+
T Consensus 554 Ls~vv~~dpef~as~~s---------kI~P~~i~lF~k~s~DP~V----------~~~~qd~f~el~q~~~~~g~m~e~~ 614 (1005)
T KOG2274|consen 554 LSSVVKLDPEFAASMES---------KICPLTINLFLKYSEDPQV----------ASLAQDLFEELLQIAANYGPMQERL 614 (1005)
T ss_pred HHHHhccChhhhhhhhc---------chhHHHHHHHHHhcCCchH----------HHHHHHHHHHHHHHHHhhcchHHHH
Confidence 66655555555 32222 2457777788888888852 12333444444444444433333
Q ss_pred HHHHHHhhccch
Q 005727 493 LDKLIRLLETPI 504 (680)
Q Consensus 493 id~LVqLlEsPi 504 (680)
|+-||+.+-.|.
T Consensus 615 iPslisil~~~~ 626 (1005)
T KOG2274|consen 615 IPSLISVLQLNA 626 (1005)
T ss_pred HHHHHHHHcCcc
Confidence 666666666655
No 60
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.0017 Score=75.40 Aligned_cols=287 Identities=18% Similarity=0.253 Sum_probs=175.9
Q ss_pred hhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccc
Q 005727 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (680)
Q Consensus 30 L~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~ 108 (680)
+--+.+.+-+-|..++.-| .|.||..+..++..+. .+++.+.+.+++..+++.||+=| .+.-|++.-.+
T Consensus 105 llLltNslknDL~s~nq~v---VglAL~alg~i~s~Em---ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P---- 174 (866)
T KOG1062|consen 105 LLLLTNSLKNDLNSSNQYV---VGLALCALGNICSPEM---ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP---- 174 (866)
T ss_pred HHHHHHHHHhhccCCCeee---hHHHHHHhhccCCHHH---hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc----
Confidence 3334466666666665544 4445555554455443 46788888888888999998877 55555433111
Q ss_pred cccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhc
Q 005727 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (680)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~ 188 (680)
--++.|+|....++.+.+..|--..+..+..++++.+. .+.|+-++.+++++.| +.+..
T Consensus 175 -~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~-~l~~fr~l~~~lV~iL-------------------k~l~~ 233 (866)
T KOG1062|consen 175 -DLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPD-ALSYFRDLVPSLVKIL-------------------KQLTN 233 (866)
T ss_pred -hHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHH-------------------HHHhc
Confidence 12566888889999888888888888888888877763 3445544555444322 22211
Q ss_pred ---CCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhc---CCchhHHHH-HHHHH
Q 005727 189 ---SPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS---DKEEKIRVV-ARETN 261 (680)
Q Consensus 189 ---~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Ls---ds~~eIR~~-A~~~n 261 (680)
.++.|+..| +||+.|..++..++ +.|.+ -+-..+++.-||.... |+...+-.+ -.+|.
T Consensus 234 ~~yspeydv~gi----------~dPFLQi~iLrlLr----iLGq~-d~daSd~M~DiLaqvatntdsskN~GnAILYE~V 298 (866)
T KOG1062|consen 234 SGYSPEYDVHGI----------SDPFLQIRILRLLR----ILGQN-DADASDLMNDILAQVATNTDSSKNAGNAILYECV 298 (866)
T ss_pred CCCCCccCccCC----------CchHHHHHHHHHHH----HhcCC-CccHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence 123333322 46777777666555 22222 1112333333333222 111111110 01222
Q ss_pred HHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHH
Q 005727 262 EELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVL 341 (680)
Q Consensus 262 ~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al 341 (680)
..++.+-.+ .++ ...-+++|.+-|.+...-+|.-||+-|.-+....|..+..|= .+++.||.|+++.+++.|+
T Consensus 299 ~TI~~I~~~--~~L-rvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr----~tIleCL~DpD~SIkrral 371 (866)
T KOG1062|consen 299 RTIMDIRSN--SGL-RVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHR----STILECLKDPDVSIKRRAL 371 (866)
T ss_pred HHHHhccCC--chH-HHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHH----HHHHHHhcCCcHHHHHHHH
Confidence 222222211 111 134467788888877777899999999999999998888874 4678999999999999999
Q ss_pred HHHHHHhhccchHHHHHHHHHHhhcccch
Q 005727 342 EVHACIAKDLQHFRQLVVFLVHNFRVDNS 370 (680)
Q Consensus 342 ~lLa~Is~~~~~F~~fm~~LL~lf~~d~~ 370 (680)
+++-.+. |++..+.+++.|+..+.....
T Consensus 372 ELs~~lv-n~~Nv~~mv~eLl~fL~~~d~ 399 (866)
T KOG1062|consen 372 ELSYALV-NESNVRVMVKELLEFLESSDE 399 (866)
T ss_pred HHHHHHh-ccccHHHHHHHHHHHHHhccH
Confidence 9999998 577888889999988865543
No 61
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.0035 Score=72.44 Aligned_cols=321 Identities=17% Similarity=0.217 Sum_probs=175.4
Q ss_pred hhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHHH-HHH-----HHH
Q 005727 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAH-LLD-----RLV 100 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA~-~Ld-----rll 100 (680)
..-++.+.|.|.+||.++++-||+.|--|++.|-|+.- ...+--|+++... +.++.|++.|..|. .|- +.+
T Consensus 129 ~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~-~L~pDapeLi~~f--L~~e~DpsCkRNAFi~L~~~D~ErAl 205 (948)
T KOG1058|consen 129 PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE-HLIPDAPELIESF--LLTEQDPSCKRNAFLMLFTTDPERAL 205 (948)
T ss_pred HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh-hhcCChHHHHHHH--HHhccCchhHHHHHHHHHhcCHHHHH
Confidence 45577889999999999999999999999998877522 1223334444432 47899999998883 221 111
Q ss_pred HHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 005727 101 KDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALW 180 (680)
Q Consensus 101 kdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~ 180 (680)
+ ...+. ...+.+-++.....+++.|+......+..= ..|++.+..+|+-+++.|+-+|...|.
T Consensus 206 ~-Yl~~~------------idqi~~~~~~LqlViVE~Irkv~~~~p~~~----~~~i~~i~~lL~stssaV~fEaa~tlv 268 (948)
T KOG1058|consen 206 N-YLLSN------------IDQIPSFNDSLQLVIVELIRKVCLANPAEK----ARYIRCIYNLLSSTSSAVIFEAAGTLV 268 (948)
T ss_pred H-HHHhh------------HhhccCccHHHHHHHHHHHHHHHhcCHHHh----hHHHHHHHHHHhcCCchhhhhhcceEE
Confidence 1 11110 011111223333334444443333222111 122333334444444444433322111
Q ss_pred HHHHHhhcCCCC-ChHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHH
Q 005727 181 EFLQEIKNSPSV-DYGRMAEILVQRA-ASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVAR 258 (680)
Q Consensus 181 ~fL~ei~~~~~~-d~~~II~iLl~~~-~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~ 258 (680)
.+- . .+ -+..-.+.++..+ ..+|-.+++..+--|.++-. .-..-+.+++--+|+.++-++-++|.-
T Consensus 269 ~lS----~--~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~----~~~~il~~l~mDvLrvLss~dldvr~K-- 336 (948)
T KOG1058|consen 269 TLS----N--DPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKA----LHEKILQGLIMDVLRVLSSPDLDVRSK-- 336 (948)
T ss_pred Ecc----C--CHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhh----hhHHHHHHHHHHHHHHcCcccccHHHH--
Confidence 110 0 00 0000001111110 11222233333333333321 112235566667778888888898854
Q ss_pred HHHHHHHHhccCCCCCCChHhHHHHHHHhcCCC-------cHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCC
Q 005727 259 ETNEELRAIKADPADGFDVGPILSIATRQLSSE-------WEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSD 331 (680)
Q Consensus 259 ~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~-------~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD 331 (680)
+.+-.++++. .-++++++..|...+... +..=|..=++.+...+-++| .+....+|.|++.++|
T Consensus 337 -tldi~ldLvs----srNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp----~~aatvV~~ll~fisD 407 (948)
T KOG1058|consen 337 -TLDIALDLVS----SRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP----EVAATVVSLLLDFISD 407 (948)
T ss_pred -HHHHHHhhhh----hccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh----HHHHHHHHHHHHHhcc
Confidence 4444455553 356899999999888422 12236666677777777665 4567899999999999
Q ss_pred CCHHHHHHHHHHHHHHhhccchHH-HHHHHHHHhhcccchhHHhHHHHHHH-HHHhhcC
Q 005727 332 PSDEVVLLVLEVHACIAKDLQHFR-QLVVFLVHNFRVDNSLLEKRGALIIR-RLCVLLD 388 (680)
Q Consensus 332 ~s~eV~~~al~lLa~Is~~~~~F~-~fm~~LL~lf~~d~~lLe~rg~~IIr-qLc~~L~ 388 (680)
..+..-+-++..+.+..+.-+.++ .++..|+.-|..-|.---.||+.||- --|..++
T Consensus 408 ~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 408 SNEAAASDVLMFVREAIEKFPNLRASIIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred CCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 998877777777776665445555 48888888886554444578888664 3344443
No 62
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.98 E-value=0.016 Score=68.54 Aligned_cols=279 Identities=15% Similarity=0.111 Sum_probs=161.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccccHhhhHHHH
Q 005727 41 FSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLL 119 (680)
Q Consensus 41 l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L 119 (680)
+.+++.+.|.-|.-.+ |+...-|+- +..+|+-+.|.++..|..+|.-- .-|-+..|--..+ .-.-++.+
T Consensus 28 l~s~n~~~kidAmK~i--Ia~M~~G~d---mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~-----~lLavNti 97 (757)
T COG5096 28 LESSNDYKKIDAMKKI--IAQMSLGED---MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL-----ALLAVNTI 97 (757)
T ss_pred ccccChHHHHHHHHHH--HHHHhcCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH-----HHHHHHHH
Confidence 6677777777665544 344445553 57778888888887788888755 2233333311111 12247888
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHH-HH
Q 005727 120 RERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGR-MA 198 (680)
Q Consensus 120 ~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~-II 198 (680)
+.-++++||.+|-+|+..++.+ .. -..++.+++.+.++++|+++.||+.|.-|+..+-+ ..++...+. .+
T Consensus 98 ~kDl~d~N~~iR~~AlR~ls~l---~~---~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~---ld~~l~~~~g~~ 168 (757)
T COG5096 98 QKDLQDPNEEIRGFALRTLSLL---RV---KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR---LDKDLYHELGLI 168 (757)
T ss_pred HhhccCCCHHHHHHHHHHHHhc---Ch---HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh---cCHhhhhcccHH
Confidence 8889999999999998887743 22 44578889999999999999999998878766643 222222233 67
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHH-HHHHHHHhccCCCCCCCh
Q 005727 199 EILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARE-TNEELRAIKADPADGFDV 277 (680)
Q Consensus 199 ~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~-~n~~Ll~~v~~~~~~ldl 277 (680)
.++..-+.+.||.+...|+..+.++ .++...+|.-.+...+-....-+....-+.... ..+.++.....+.+ +-
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i---~~e~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~--s~ 243 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEI---DPELAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPD--SA 243 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHh---chhhhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCC--cH
Confidence 7777778899999998888877654 344566666665555544332111111000011 11222222221111 23
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005727 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHAC 346 (680)
Q Consensus 278 ~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~ 346 (680)
..+...+.-.+.+.+..+=..+++-+..+....+..= .....-|.+. +|.+..++.+.-++.....
T Consensus 244 ~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~--~~~~~~~~l~-~Ll~~~~~~~~~vl~~~~~ 309 (757)
T COG5096 244 EDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSNN--LFLISSPPLV-TLLAKPESLIQYVLRRNIQ 309 (757)
T ss_pred HHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhcccc--HHHhhccHHH-HHHcCCHHHHHHHHHHhhH
Confidence 3444455555566666666666666666655544321 2222223333 3344445555555544443
No 63
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.96 E-value=0.0046 Score=69.17 Aligned_cols=213 Identities=16% Similarity=0.168 Sum_probs=156.5
Q ss_pred cHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHhhcC-CchhhhhchHHHHHHHHHhc-CCCChhHHHHHHHHHHHHHHHhh
Q 005727 111 SIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSV-PDIDMLGFLPDFLDGLFNML-SDSSHEIRQQADSALWEFLQEIK 187 (680)
Q Consensus 111 ~L~~fIP~L~e~i~-~~np~vR~~avswI~~L~si-p~~~Li~~Lp~~L~~Lf~lL-sD~~~dVR~~a~~~L~~fL~ei~ 187 (680)
+...++..+.+... ..++.+|..++..+..+.+. ++.+ .+.++++.+.... ++..++.|..+-+.+.-..+...
T Consensus 186 ~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv 262 (415)
T PF12460_consen 186 DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALV 262 (415)
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHH
Confidence 45556666666654 45699999999999987765 4443 6677777777666 55666777777777777777776
Q ss_pred cCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC--------ccc-----ccchHhHHHHHhhhhcCCchhHH
Q 005727 188 NSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG--------DQL-----VPYYADILGAILPCISDKEEKIR 254 (680)
Q Consensus 188 ~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~--------~~l-----~pfLp~LLp~LL~~Lsds~~eIR 254 (680)
-..++.-..+++.++.-+.+ +.+...|..-++.++.-.+ ... ..|+..++|.++......+.++|
T Consensus 263 ~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k 340 (415)
T PF12460_consen 263 MRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIK 340 (415)
T ss_pred HcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhH
Confidence 66677788888888888876 4455555555554443211 111 24678888988888888777777
Q ss_pred HHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHh
Q 005727 255 VVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKA 328 (680)
Q Consensus 255 ~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~ 328 (680)
.....+...+++-+...--..+++.++|.|.+-|..++..+|.++|+-+..+.+..|+-+.+|++.++|.|++.
T Consensus 341 ~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 341 SNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 77777776666554321112357899999999999889999999999999999999999999999999999863
No 64
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.00072 Score=76.89 Aligned_cols=254 Identities=21% Similarity=0.185 Sum_probs=162.4
Q ss_pred HHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhh----cc-cc
Q 005727 36 PVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT----ES-DQ 109 (680)
Q Consensus 36 ~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~----es-~~ 109 (680)
-+...++|+|.+||..|.++|..+..+.+ + -..+..-.++.++|.+..||.+| .++-=.-+-... +. +.
T Consensus 202 ~l~~~~~~~D~~Vrt~A~eglL~L~eg~k---L--~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 202 GLIYLEHDQDFRVRTHAVEGLLALSEGFK---L--SKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhccccc---c--cHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 37778899999999999999988765333 1 23467778899999999999999 553322221111 11 11
Q ss_pred ccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHH--------------H---------------
Q 005727 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDG--------------L--------------- 160 (680)
Q Consensus 110 f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~--------------L--------------- 160 (680)
.-.+.-.-.+.+.+.|....||..|-..++-+..+...=+..-|+.=+-+ +
T Consensus 277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~ad 356 (823)
T KOG2259|consen 277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNAD 356 (823)
T ss_pred hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccccc
Confidence 22344456677888888999999988888877776653222222211111 0
Q ss_pred ----------------------HHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCh-HHHHHHHHHhcCCCCHHHHHHHH
Q 005727 161 ----------------------FNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDY-GRMAEILVQRAASPDEFTRLTAI 217 (680)
Q Consensus 161 ----------------------f~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~-~~II~iLl~~~~s~d~~irl~Al 217 (680)
..=+.|.--|||++|-..+..+.. + .+++ ..-+.+|+...++..+.+|+.|+
T Consensus 357 vpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~---s--sP~FA~~aldfLvDMfNDE~~~VRL~ai 431 (823)
T KOG2259|consen 357 VPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLAT---S--SPGFAVRALDFLVDMFNDEIEVVRLKAI 431 (823)
T ss_pred CchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHc---C--CCCcHHHHHHHHHHHhccHHHHHHHHHH
Confidence 111223335789888776665543 2 3444 45678889999988899999999
Q ss_pred HHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCCh-------HhHHHHHHHhcCC
Q 005727 218 TWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV-------GPILSIATRQLSS 290 (680)
Q Consensus 218 ~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl-------~~iL~vL~~~L~~ 290 (680)
..+..+... +.-=.+.++.++.++.|..+++|+...+.... . ...|. ..++..|...=+|
T Consensus 432 ~aL~~Is~~-----l~i~eeql~~il~~L~D~s~dvRe~l~elL~~----~----~~~d~~~i~m~v~~lL~~L~kyPqD 498 (823)
T KOG2259|consen 432 FALTMISVH-----LAIREEQLRQILESLEDRSVDVREALRELLKN----A----RVSDLECIDMCVAHLLKNLGKYPQD 498 (823)
T ss_pred HHHHHHHHH-----heecHHHHHHHHHHHHhcCHHHHHHHHHHHHh----c----CCCcHHHHHHHHHHHHHHhhhCCCC
Confidence 998877654 22236789999999999999999887665431 1 11111 2333333333233
Q ss_pred CcHHHHHHHHHHHHHHHhhChhhHhhh
Q 005727 291 EWEATRIEALHWISTLLNRHRTEVLHF 317 (680)
Q Consensus 291 ~~~~tR~aaL~WL~~L~~~~p~~~~~~ 317 (680)
|-..+.-++.++.+.+.-+...
T Consensus 499 -----rd~i~~cm~~iGqnH~~lv~s~ 520 (823)
T KOG2259|consen 499 -----RDEILRCMGRIGQNHRRLVLSN 520 (823)
T ss_pred -----cHHHHHHHHHHhccChhhHHHH
Confidence 4556667777888776655443
No 65
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.90 E-value=2.1e-05 Score=62.21 Aligned_cols=55 Identities=16% Similarity=0.155 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 005727 293 EATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACI 347 (680)
Q Consensus 293 ~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~I 347 (680)
|.+|.+|+..|+.+.+.+++.+.++.++++|.|++.|.|++++||..+++.|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6789999999999999999999999999999999999999999999999999865
No 66
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.0019 Score=75.04 Aligned_cols=365 Identities=16% Similarity=0.166 Sum_probs=236.9
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccccH
Q 005727 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSI 112 (680)
Q Consensus 34 v~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L 112 (680)
++..-..+.++.+..|.-|...+ |+...-|. -...+|+.+.|..+-.|...|+-. .-+-+..+.-... -
T Consensus 15 i~elks~l~s~~~~kr~~a~kkv--Ia~Mt~G~---DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~-----a 84 (734)
T KOG1061|consen 15 IPELKSQLNSQSKEKRKDAVKKV--IAYMTVGK---DVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL-----A 84 (734)
T ss_pred chHHHHHhhhhhhhhHHHHHHHH--HhcCccCc---chHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchH-----H
Confidence 34445555666666666654332 33322232 234677777787777777666655 2233332221111 1
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCC
Q 005727 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV 192 (680)
Q Consensus 113 ~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~ 192 (680)
...++.+..-..++||-+|-.|+..++.+- -. ....-+.+.|.+.+.|.++.||+.+.-+...+-. +.. ..+
T Consensus 85 ~~avnt~~kD~~d~np~iR~lAlrtm~~l~---v~---~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~-~~~-~~~ 156 (734)
T KOG1061|consen 85 ILAVNTFLKDCEDPNPLIRALALRTMGCLR---VD---KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFD-IDP-DLV 156 (734)
T ss_pred HhhhhhhhccCCCCCHHHHHHHhhceeeEe---eh---HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhc-CCh-hhc
Confidence 236788888889999999999988776432 11 2234457888999999999999998777665532 211 123
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCc-ccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCC
Q 005727 193 DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD-QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADP 271 (680)
Q Consensus 193 d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~-~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~ 271 (680)
+-..+++.|-..+.+.++.|-..|+..+.++.+..+. .....-+.++..++..+..-++=-+ ....+.+.....
T Consensus 157 ~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~q---i~IL~~l~~y~p-- 231 (734)
T KOG1061|consen 157 EDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQ---IFILDCLAEYVP-- 231 (734)
T ss_pred cccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhH---HHHHHHHHhcCC--
Confidence 4467888888888899999999999999999888764 4444555666666666553322111 111222222222
Q ss_pred CCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-hc
Q 005727 272 ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-KD 350 (680)
Q Consensus 272 ~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is-~~ 350 (680)
.+..+...+++-+..++.+.+..+-+++.+.+..+....++--.....++-|.++..++-++ ++-..++.=+..|. ..
T Consensus 232 ~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~ 310 (734)
T KOG1061|consen 232 KDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKR 310 (734)
T ss_pred CCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhC
Confidence 22356788999999999999999999999999998888877445566777788887776666 77666666555544 34
Q ss_pred cchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcChhhHHHHHHHhhcc--cCChhHHHHHHHHHHHHHhchHHH
Q 005727 351 LQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILEG--EADLDFACTMVQALNLILLTSSEL 426 (680)
Q Consensus 351 ~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~e~Iy~~La~iL~~--~~Dl~F~~~mVq~Ln~iLLTa~EL 426 (680)
..+|+.=+..+.-.+.+---.-.++ +.-++.+.+.+.+...+++..+. +.|.+|+...|+.+..+-+..++-
T Consensus 311 p~~~~~~~~~Ff~kynDPiYvK~eK----leil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~ 384 (734)
T KOG1061|consen 311 PEILKVEIKVFFCKYNDPIYVKLEK----LEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS 384 (734)
T ss_pred hHHHHhHhHeeeeecCCchhhHHHH----HHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh
Confidence 4455554444433333332111222 45567788888899988888766 467899999999998888776654
No 67
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.86 E-value=0.0019 Score=77.76 Aligned_cols=248 Identities=15% Similarity=0.108 Sum_probs=158.9
Q ss_pred HhhhHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC
Q 005727 112 IEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (680)
Q Consensus 112 L~~fIP~L~e~i~~-~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~ 190 (680)
+-.|++.+..+|+. ..+..|..|++.+..+....+.+ .-++.++|.+..++.|+..+||-.|-..|.+++..++..+
T Consensus 420 a~l~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de--~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~ 497 (1431)
T KOG1240|consen 420 AVLFVSVLTSCIRALKTIQTKLAALELLQELSTYIDDE--VKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIP 497 (1431)
T ss_pred eeeeHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchH--HHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCC
Confidence 45689999999986 45799999999999998766543 3588999999999999999999999999999999888766
Q ss_pred CCChHHHHHHHHHh----cCCCCH-HHH-----------HHHHHHHHHHHHh--c-----Cc-------ccccchHhHH-
Q 005727 191 SVDYGRMAEILVQR----AASPDE-FTR-----------LTAITWINEFVKL--G-----GD-------QLVPYYADIL- 239 (680)
Q Consensus 191 ~~d~~~II~iLl~~----~~s~d~-~ir-----------l~Al~WL~e~~~l--~-----~~-------~l~pfLp~LL- 239 (680)
..|-.=+.+||..+ ..+.++ .+| .+|...+..--++ . ++ ..-.++..+.
T Consensus 498 ~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~ 577 (1431)
T KOG1240|consen 498 PSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH 577 (1431)
T ss_pred cccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH
Confidence 55533333444333 334222 233 2222222111010 0 00 0111233332
Q ss_pred ---HHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhh
Q 005727 240 ---GAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH 316 (680)
Q Consensus 240 ---p~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~ 316 (680)
..+...++|+.+-+|.+-.+....|-...+... .-+-++..|.-.|.+..|..|-+-.+=+.-+.--.+.. .
T Consensus 578 ~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k---sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s 652 (1431)
T KOG1240|consen 578 TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK---SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--S 652 (1431)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc---cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--e
Confidence 344556678887787765555444433333211 12568899999999999999977555443222221111 1
Q ss_pred hhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc----cchHHHHHHHHHHhhc
Q 005727 317 FLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD----LQHFRQLVVFLVHNFR 366 (680)
Q Consensus 317 ~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~----~~~F~~fm~~LL~lf~ 366 (680)
--+-++|.|...|.|+.+.|+-+|++.+.-+++. ..+..++++..+-++-
T Consensus 653 ~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~ 706 (1431)
T KOG1240|consen 653 VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLC 706 (1431)
T ss_pred HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhhee
Confidence 2345889999999999999999999999988853 4455556655555543
No 68
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.84 E-value=6.1e-05 Score=67.52 Aligned_cols=111 Identities=20% Similarity=0.153 Sum_probs=83.7
Q ss_pred hhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHH-HHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhcccc
Q 005727 32 QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFN-QIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ 109 (680)
Q Consensus 32 ~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~-eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~ 109 (680)
.+++.++..+.|+++.+|..|+.++.++++........... .+++.+.+++.|+++.|+..| .+|.+++.+-......
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 37888999999999999999999999987643222222233 788999999999999999998 7888876532211111
Q ss_pred ccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 005727 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLD 142 (680)
Q Consensus 110 f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~ 142 (680)
.--..++|.+.+.+.+.+..+|..++..+..+.
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 111337999999999999999999999988764
No 69
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.84 E-value=0.016 Score=66.90 Aligned_cols=328 Identities=18% Similarity=0.170 Sum_probs=179.6
Q ss_pred HHHHHHHHhhhhhhhhh-------hhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchh-hhHHHHHHHHHHh
Q 005727 10 EIIVEQFLLYADLFFYS-------ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFI-IFFNQIFDALCKL 81 (680)
Q Consensus 10 ~~~~~~~~~~~~~~~~~-------~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il-~~f~eIfd~L~kL 81 (680)
++|+++.+-|+.-++.. ...+..+...++++...+|..||+-.|.-+..+.. +-+++- .-||.+...+.+-
T Consensus 56 esi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~R 134 (892)
T KOG2025|consen 56 ESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIR 134 (892)
T ss_pred CCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHH
Confidence 45677777666655543 34567788889999999999999999987765543 222221 3467777777777
Q ss_pred hcCCChhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHh-cCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHH
Q 005727 82 SADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERM-NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDG 159 (680)
Q Consensus 82 ~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i-~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~ 159 (680)
+-|.+++||--| .+|.++-.|=. .+.+++ +..+..-+ +|++++||..+++.|.+=.+. +| .
T Consensus 135 l~Drep~VRiqAv~aLsrlQ~d~~--dee~~v---~n~l~~liqnDpS~EVRRaaLsnI~vdnsT--------lp----~ 197 (892)
T KOG2025|consen 135 LKDREPNVRIQAVLALSRLQGDPK--DEECPV---VNLLKDLIQNDPSDEVRRAALSNISVDNST--------LP----C 197 (892)
T ss_pred HhccCchHHHHHHHHHHHHhcCCC--CCcccH---HHHHHHHHhcCCcHHHHHHHHHhhccCccc--------ch----h
Confidence 899999999998 77777643111 122333 22222223 699999999999888642221 33 3
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHH-----HHHHHHHHH----Hh----
Q 005727 160 LFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLT-----AITWINEFV----KL---- 226 (680)
Q Consensus 160 Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~-----Al~WL~e~~----~l---- 226 (680)
+..-.-|.+..+|+.+ -...+..| .....++++-+-.|-..+.+.+..++.. +-.|+.... +.
T Consensus 198 IveRarDV~~anRrlv---Y~r~lpki-d~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~l 273 (892)
T KOG2025|consen 198 IVERARDVSGANRRLV---YERCLPKI-DLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERL 273 (892)
T ss_pred HHHHhhhhhHHHHHHH---HHHhhhhh-hhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHh
Confidence 4446778888888775 23344444 2123355666666666666666555433 333665211 00
Q ss_pred ----cCcccccchHhHHHHHhh----hh-------cCCchhHHHHHHHHHHHHHHhccCCCC------CCChHhHHHHHH
Q 005727 227 ----GGDQLVPYYADILGAILP----CI-------SDKEEKIRVVARETNEELRAIKADPAD------GFDVGPILSIAT 285 (680)
Q Consensus 227 ----~~~~l~pfLp~LLp~LL~----~L-------sds~~eIR~~A~~~n~~Ll~~v~~~~~------~ldl~~iL~vL~ 285 (680)
..+.-+.++..+..++.+ |. +|..||+.-..... .++...+.+. -.++...++.+.
T Consensus 274 dvsnss~vavk~lealf~~v~e~v~~~k~f~~~~~~~~t~Eiaf~~~al---~l~~~~~e~~e~le~i~pe~~~~~d~l~ 350 (892)
T KOG2025|consen 274 DVSNSSEVAVKALEALFSGVREDVGSCKNFDLILVEDLTPEIAFLWCAL---CLKSKGDEGTEFLELILPEPVVLVDYLL 350 (892)
T ss_pred ccccchHHHHHHHHHHHHHHHHHhhhhhcccchhhhcccHHHHHHHHHH---HHHhhcchhhHHHHHhCCCHHHHHHHHH
Confidence 001112222222221111 11 12223331110000 0011111000 012222222222
Q ss_pred HhcC--------------CCcHHHHHHHHHHHHHHHhhChhhHhhhhH-----HHHHHHHHhcCCC--CHHHHHHHHHHH
Q 005727 286 RQLS--------------SEWEATRIEALHWISTLLNRHRTEVLHFLN-----DIFDTLLKALSDP--SDEVVLLVLEVH 344 (680)
Q Consensus 286 ~~L~--------------~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~-----~l~p~LL~~LsD~--s~eV~~~al~lL 344 (680)
.... ..+..+.+-++.-|..+++.+ .+.+ .++..+-+.|+=+ ....++...+.+
T Consensus 351 ~~i~~~~~~e~~~~~~~~~~~~~~~~fi~eqL~~i~~sy-----D~sdE~gRkklL~vv~n~Lal~tlp~slVs~~Ve~l 425 (892)
T KOG2025|consen 351 RYIQSVYEVEEESGSKSYISNYMTQEFIIEQLFRIARSY-----DFSDEAGRKKLLSVVYNLLALNTLPISLVSEVVEEL 425 (892)
T ss_pred HhhhhHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHhh-----hhhhhhhHHHHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 2211 123345666666666666654 2222 2444444444433 345678888999
Q ss_pred HHHhhccchHHHHHHHHHHhhcc
Q 005727 345 ACIAKDLQHFRQLVVFLVHNFRV 367 (680)
Q Consensus 345 a~Is~~~~~F~~fm~~LL~lf~~ 367 (680)
.+|+.++..|-..+.+++.-..+
T Consensus 426 ~~i~s~endf~~~l~EiI~eIr~ 448 (892)
T KOG2025|consen 426 MQIASLENDFTDDLNEIIGEIRK 448 (892)
T ss_pred HHHHhhcchHHHHHHHHHHHHhc
Confidence 99999999999988888887765
No 70
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=97.81 E-value=9.3e-05 Score=72.02 Aligned_cols=112 Identities=20% Similarity=0.197 Sum_probs=90.3
Q ss_pred CCChHhHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhChhhHh-----------------------------hhhHHHHH
Q 005727 274 GFDVGPILSIATRQLSSE-WEATRIEALHWISTLLNRHRTEVL-----------------------------HFLNDIFD 323 (680)
Q Consensus 274 ~ldl~~iL~vL~~~L~~~-~~~tR~aaL~WL~~L~~~~p~~~~-----------------------------~~l~~l~p 323 (680)
+.+|++++++|.+.++++ ++..|.++++.+|.++..+|.... +..++.+|
T Consensus 5 Y~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~ 84 (160)
T PF11865_consen 5 YLDYPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYP 84 (160)
T ss_pred HHHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHH
Confidence 356899999999999765 488999999999999999887332 13445554
Q ss_pred -----HHHHhcCCCCHHHHH-HHHHHHHHHh-----hccchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcC
Q 005727 324 -----TLLKALSDPSDEVVL-LVLEVHACIA-----KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLD 388 (680)
Q Consensus 324 -----~LL~~LsD~s~eV~~-~al~lLa~Is-----~~~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~ 388 (680)
+|++.|+|++-...+ .+.+++..|. ++.+||.++++.+++.+++... .+.+++++||+.++.
T Consensus 85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~---~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPD---SLREFYFQQLADLVS 157 (160)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCH---HHHHHHHHHHHHHHH
Confidence 899999999876655 6888888887 3678999999999999997766 455889999998754
No 71
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.80 E-value=0.0025 Score=71.06 Aligned_cols=208 Identities=15% Similarity=-0.069 Sum_probs=137.5
Q ss_pred hHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhcccccc
Q 005727 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFS 111 (680)
Q Consensus 33 Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~ 111 (680)
.+..++.++.|++..||..|.++|..| ..++..+.|..++.|.++.||.++ .++... ..+
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i----------~~~~a~~~L~~~L~~~~p~vR~aal~al~~r----~~~----- 147 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWL----------GGRQAEPWLEPLLAASEPPGRAIGLAALGAH----RHD----- 147 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcC----------CchHHHHHHHHHhcCCChHHHHHHHHHHHhh----ccC-----
Confidence 378999999999999999999998654 235678888999999999999877 443331 111
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCC
Q 005727 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS 191 (680)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~ 191 (680)
-.+.+...+.+.+|.||.-++..++.+-.. +..+.|...+.|.+++||.+|..++..+-.
T Consensus 148 ---~~~~L~~~L~d~d~~Vra~A~raLG~l~~~----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~------- 207 (410)
T TIGR02270 148 ---PGPALEAALTHEDALVRAAALRALGELPRR----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS------- 207 (410)
T ss_pred ---hHHHHHHHhcCCCHHHHHHHHHHHHhhccc----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC-------
Confidence 145566667799999999999999876532 223345567999999999999888755421
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCC
Q 005727 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADP 271 (680)
Q Consensus 192 ~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~ 271 (680)
+.-++.++.....++...+..+..++. .++ -++.++.|...+.+++ +|..+..+.+. +++
T Consensus 208 ---~~A~~~l~~~~~~~g~~~~~~l~~~la----l~~------~~~a~~~L~~ll~d~~--vr~~a~~AlG~----lg~- 267 (410)
T TIGR02270 208 ---RLAWGVCRRFQVLEGGPHRQRLLVLLA----VAG------GPDAQAWLRELLQAAA--TRREALRAVGL----VGD- 267 (410)
T ss_pred ---HhHHHHHHHHHhccCccHHHHHHHHHH----hCC------chhHHHHHHHHhcChh--hHHHHHHHHHH----cCC-
Confidence 233445554334444444443333443 112 2377777777777754 77777766652 221
Q ss_pred CCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 005727 272 ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLL 307 (680)
Q Consensus 272 ~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~ 307 (680)
+..++.|.+.+.++. .|..|-..+..|.
T Consensus 268 ------p~av~~L~~~l~d~~--~aR~A~eA~~~It 295 (410)
T TIGR02270 268 ------VEAAPWCLEAMREPP--WARLAGEAFSLIT 295 (410)
T ss_pred ------cchHHHHHHHhcCcH--HHHHHHHHHHHhh
Confidence 457778888887655 4555555544443
No 72
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.79 E-value=0.0014 Score=64.84 Aligned_cols=135 Identities=16% Similarity=0.167 Sum_probs=93.3
Q ss_pred ChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhc
Q 005727 168 SHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS 247 (680)
Q Consensus 168 ~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Ls 247 (680)
++.||..+..++++++....+ -+++.++.+..++.++++.||.+|+.-+..++. .+++..-+.++..++.++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~----~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~---~d~ik~k~~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN----LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLIL---EDMIKVKGQLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH----HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHH---cCceeehhhhhHHHHHHHc
Confidence 578999999999999864421 367888999999999999999999998887764 4677777888899999999
Q ss_pred CCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCC-----CcHHHHHHHHHHHHHHHhh
Q 005727 248 DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS-----EWEATRIEALHWISTLLNR 309 (680)
Q Consensus 248 ds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~-----~~~~tR~aaL~WL~~L~~~ 309 (680)
|++++||..|.....++........-.-.+++++..+...-.+ .+.+.|....+.+.....+
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~ 140 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK 140 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc
Confidence 9999999999988876654422111011234444444443322 2334455555554444443
No 73
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.049 Score=65.54 Aligned_cols=319 Identities=18% Similarity=0.142 Sum_probs=210.4
Q ss_pred HHhhhhhh--hhhhhhhhhhHHHHhhccCCCCHHH-HHHH-HHHHHHHHHhhc-cchhhhHHHHHHHHHHhhcCCCh--h
Q 005727 16 FLLYADLF--FYSETILQQIVPPVLNSFSDQDSRV-RYYA-CEALYNIAKVVR-GDFIIFFNQIFDALCKLSADSDA--N 88 (680)
Q Consensus 16 ~~~~~~~~--~~~~~yL~~Iv~~VL~~l~D~d~rV-R~~A-~eaL~nI~kv~~-~~il~~f~eIfd~L~kL~aD~d~--~ 88 (680)
++++++++ .++.+++..++.-++.|-.+..+++ +..+ ..++..|-|.++ +..+++.+..+..|.....+.|. -
T Consensus 196 alllsk~~sR~D~~~~~~~Fl~~~l~~~s~~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~l 275 (1133)
T KOG1943|consen 196 ALLLSKLFSRTDVKDLLLSFLDWLLDCPSTETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSL 275 (1133)
T ss_pred HHHHHHHcccccHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhH
Confidence 45667777 6777888888888999988777762 2232 445667777764 56678888888888766544443 2
Q ss_pred HHHHHHHHHHHHHH--Hhhc---c------------------------------------c--cccHhhhHHHHHHHhcC
Q 005727 89 VQSAAHLLDRLVKD--IVTE---S------------------------------------D--QFSIEEFIPLLRERMNV 125 (680)
Q Consensus 89 Vr~gA~~Ldrllkd--iv~e---s------------------------------------~--~f~L~~fIP~L~e~i~~ 125 (680)
+|+ .+-+++.. ++.- + + .-.++.++..|++.+.+
T Consensus 276 lrK---llvKl~QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~d 352 (1133)
T KOG1943|consen 276 LRK---LLVKLVQRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALSD 352 (1133)
T ss_pred HHH---HHHHHHHHhhheecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhccC
Confidence 222 23333221 1110 0 0 02356889999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCCchhhhh-chHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCC----hHHHHHH
Q 005727 126 LNPYVRQFLVGWITVLDSVPDIDMLG-FLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD----YGRMAEI 200 (680)
Q Consensus 126 ~np~vR~~avswI~~L~sip~~~Li~-~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d----~~~II~i 200 (680)
.+..||=.|..-++.+.+.-+.+++. .+.++++ +|.-.. +...=-.+|-+|.++.. + +.. ++.++|.
T Consensus 353 ~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid-~~~p~e--~~~aWHgacLaLAELA~---r--GlLlps~l~dVvpl 424 (1133)
T KOG1943|consen 353 TDTVVRWSAAKGLGRVTSRLPPELADQVIGSVID-LFNPAE--DDSAWHGACLALAELAL---R--GLLLPSLLEDVVPL 424 (1133)
T ss_pred CcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHH-hcCcCC--chhHHHHHHHHHHHHHh---c--CCcchHHHHHHHHH
Confidence 99999999999999999877767654 4555555 333322 23344567777777754 1 222 5688888
Q ss_pred HHHhcCCC--------CHHHHHHHHHHHHHHHHh-cCcccccchHhHHHHHhhhhc-CCchhHHHHHHHHHHHHHHhccC
Q 005727 201 LVQRAASP--------DEFTRLTAITWINEFVKL-GGDQLVPYYADILGAILPCIS-DKEEKIRVVARETNEELRAIKAD 270 (680)
Q Consensus 201 Ll~~~~s~--------d~~irl~Al~WL~e~~~l-~~~~l~pfLp~LLp~LL~~Ls-ds~~eIR~~A~~~n~~Ll~~v~~ 270 (680)
++..+.-. ...||..|+..+=.|... .+.++.||+..+.+.++-.-. |.+-.+|.+|..+..+...--++
T Consensus 425 I~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n 504 (1133)
T KOG1943|consen 425 ILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGN 504 (1133)
T ss_pred HHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCC
Confidence 88766432 356899998866566665 467899999999998887544 77889999998877643322111
Q ss_pred CCCC-------------------CC-------h----HhHHHH-HHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhH
Q 005727 271 PADG-------------------FD-------V----GPILSI-ATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN 319 (680)
Q Consensus 271 ~~~~-------------------ld-------l----~~iL~v-L~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~ 319 (680)
.+.+ .+ | ..+++. ++..+.++...+|+.+-..|..|+...|+-+..
T Consensus 505 ~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~--- 581 (1133)
T KOG1943|consen 505 FPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLAD--- 581 (1133)
T ss_pred CCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcc---
Confidence 1000 01 1 344443 444477888889999999999999999887664
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005727 320 DIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 320 ~l~p~LL~~LsD~s~eV~~~al~lLa~Is 348 (680)
..+|.++++..-.+...++-..-..+.+.
T Consensus 582 ~~L~~lld~~ls~~~~~r~g~~la~~ev~ 610 (1133)
T KOG1943|consen 582 YVLPPLLDSTLSKDASMRHGVFLAAGEVI 610 (1133)
T ss_pred cchhhhhhhhcCCChHHhhhhHHHHHHHH
Confidence 35666777666677777775555555554
No 74
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.69 E-value=0.00038 Score=62.31 Aligned_cols=106 Identities=21% Similarity=0.119 Sum_probs=83.6
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccc----h
Q 005727 279 PILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN-DIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQ----H 353 (680)
Q Consensus 279 ~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~-~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~~~----~ 353 (680)
++++.+.+.+.+.++..|..++..+..+....++......+ +.+|.+++.|+|++++|+..++++|+.++.+.+ .
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 46788888888888999999999999999988777766666 899999999999999999999999999995432 1
Q ss_pred HH--HHHHHHHHhhcccchhHHhHHHHHHHHHH
Q 005727 354 FR--QLVVFLVHNFRVDNSLLEKRGALIIRRLC 384 (680)
Q Consensus 354 F~--~fm~~LL~lf~~d~~lLe~rg~~IIrqLc 384 (680)
+. .+++.+++.+.++..-..+.+..++++||
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 22 26777777777654444445556666666
No 75
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.23 Score=59.64 Aligned_cols=230 Identities=18% Similarity=0.230 Sum_probs=140.7
Q ss_pred HHHHHhhhhhhhhhhhhhhhhHHHH---hhccCCCC---------HHHHH------------HHHHHHHHHHHhhc-cch
Q 005727 13 VEQFLLYADLFFYSETILQQIVPPV---LNSFSDQD---------SRVRY------------YACEALYNIAKVVR-GDF 67 (680)
Q Consensus 13 ~~~~~~~~~~~~~~~~yL~~Iv~~V---L~~l~D~d---------~rVR~------------~A~eaL~nI~kv~~-~~i 67 (680)
.+||-.-..+...+++++..|+..| +-|++|.| .-+|. +|+..+......-| .+.
T Consensus 328 l~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~ 407 (1010)
T KOG1991|consen 328 LEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKET 407 (1010)
T ss_pred HHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhh
Confidence 4566666677778889998888554 45666654 44564 24444433332233 233
Q ss_pred h-hhHHHHHHHHHHhhc----CCChhHHHHH-HHHHHHHHHHhhccccc--cHh-hhHHHHHHHhcCCCHHHHHHHHHHH
Q 005727 68 I-IFFNQIFDALCKLSA----DSDANVQSAA-HLLDRLVKDIVTESDQF--SIE-EFIPLLRERMNVLNPYVRQFLVGWI 138 (680)
Q Consensus 68 l-~~f~eIfd~L~kL~a----D~d~~Vr~gA-~~Ldrllkdiv~es~~f--~L~-~fIP~L~e~i~~~np~vR~~avswI 138 (680)
+ ....=+.+.|-+..+ ..++.-+.|| ..++.++ +++.+.+.+ -++ .+++.++-.+.++-=+.|.-+|-.+
T Consensus 408 l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~-~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl 486 (1010)
T KOG1991|consen 408 LPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLA-SILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVL 486 (1010)
T ss_pred hhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHH-HHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHH
Confidence 2 222223333433322 3356778899 7777776 666654321 011 1445555566777779999999999
Q ss_pred HHhhcCCchhhhhchHHHHHHHHHhcC-CCChhHHHHHHHHHHHHHHHhhcC---CCCChHHHHHHHHHhcCCCCHHHHH
Q 005727 139 TVLDSVPDIDMLGFLPDFLDGLFNMLS-DSSHEIRQQADSALWEFLQEIKNS---PSVDYGRMAEILVQRAASPDEFTRL 214 (680)
Q Consensus 139 ~~L~sip~~~Li~~Lp~~L~~Lf~lLs-D~~~dVR~~a~~~L~~fL~ei~~~---~~~d~~~II~iLl~~~~s~d~~irl 214 (680)
+.+.++.=.+ -..+-+.++...+.|. |++--||..|+-+|..|+..-+.. ...+++++++-++.-.+..+-+.-.
T Consensus 487 ~~~~~~df~d-~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt 565 (1010)
T KOG1991|consen 487 SQFSSIDFKD-PNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLT 565 (1010)
T ss_pred HHHHhccCCC-hHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHH
Confidence 9988543221 2345666777777776 889999999999999999876543 2346777777777766655543333
Q ss_pred HHHHHHHHHHHhcCcccccchHhHHH----HHhhhhc
Q 005727 215 TAITWINEFVKLGGDQLVPYYADILG----AILPCIS 247 (680)
Q Consensus 215 ~Al~WL~e~~~l~~~~l~pfLp~LLp----~LL~~Ls 247 (680)
.+ +..++.--++.+.||-+++.. ..++++.
T Consensus 566 ~v---me~iV~~fseElsPfA~eL~q~La~~F~k~l~ 599 (1010)
T KOG1991|consen 566 NV---MEKIVCKFSEELSPFAVELCQNLAETFLKVLQ 599 (1010)
T ss_pred HH---HHHHHHHHHHhhchhHHHHHHHHHHHHHHHHh
Confidence 33 344555567788888777765 3445555
No 76
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.0093 Score=69.55 Aligned_cols=244 Identities=21% Similarity=0.273 Sum_probs=136.1
Q ss_pred hhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhc
Q 005727 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE 106 (680)
Q Consensus 28 ~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~e 106 (680)
+--..+.|.|-+-+..+++-||+-|..+.+.+..... +...+|..=+ -+++.|.+..|--|+ ..+-.+++.-...
T Consensus 138 EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P-~l~e~f~~~~---~~lL~ek~hGVL~~~l~l~~e~c~~~~~~ 213 (866)
T KOG1062|consen 138 EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP-DLVEHFVIAF---RKLLCEKHHGVLIAGLHLITELCKISPDA 213 (866)
T ss_pred HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc-hHHHHhhHHH---HHHHhhcCCceeeeHHHHHHHHHhcCHHH
Confidence 4455677888888889999999999999988764333 2233332222 345667777777666 5455555521111
Q ss_pred cccc--cHhhhHHHHHHHhc-----------CCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCC-------
Q 005727 107 SDQF--SIEEFIPLLRERMN-----------VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSD------- 166 (680)
Q Consensus 107 s~~f--~L~~fIP~L~e~i~-----------~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD------- 166 (680)
..-| -++.|+..|..-.. ..+|+....++..++.+-.. +.+-...|.++|..++. =+|
T Consensus 214 l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~-d~daSd~M~DiLaqvat-ntdsskN~Gn 291 (866)
T KOG1062|consen 214 LSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQN-DADASDLMNDILAQVAT-NTDSSKNAGN 291 (866)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHh-cccccccchh
Confidence 1101 13444555544442 46788888888888765443 44556677777777663 123
Q ss_pred --------------CChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccc
Q 005727 167 --------------SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV 232 (680)
Q Consensus 167 --------------~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~ 232 (680)
+++..|..|.++|++|+ .+.|-.+|..|+..+...++..+....
T Consensus 292 AILYE~V~TI~~I~~~~~LrvlainiLgkFL----------------------~n~d~NirYvaLn~L~r~V~~d~~avq 349 (866)
T KOG1062|consen 292 AILYECVRTIMDIRSNSGLRVLAINILGKFL----------------------LNRDNNIRYVALNMLLRVVQQDPTAVQ 349 (866)
T ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHHHHh----------------------cCCccceeeeehhhHHhhhcCCcHHHH
Confidence 34444455555555554 444555555555555555555554433
Q ss_pred cchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC
Q 005727 233 PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRH 310 (680)
Q Consensus 233 pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~ 310 (680)
.| =..|+.|+.|.+..||..|.+..- .++. .-|+..+++-|...|....+..|.....-+..+++++
T Consensus 350 rH----r~tIleCL~DpD~SIkrralELs~---~lvn----~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkf 416 (866)
T KOG1062|consen 350 RH----RSTILECLKDPDVSIKRRALELSY---ALVN----ESNVRVMVKELLEFLESSDEDFKADIASKIAELAEKF 416 (866)
T ss_pred HH----HHHHHHHhcCCcHHHHHHHHHHHH---HHhc----cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Confidence 22 234566777777777766554322 2322 1234555555555555444555555555555555553
No 77
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.59 E-value=0.075 Score=62.97 Aligned_cols=46 Identities=13% Similarity=0.136 Sum_probs=31.3
Q ss_pred HHHHHHHhcCC--CCHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHhhc
Q 005727 321 IFDTLLKALSD--PSDEVVLLVLEVHACIAKD-LQHFRQLVVFLVHNFR 366 (680)
Q Consensus 321 l~p~LL~~LsD--~s~eV~~~al~lLa~Is~~-~~~F~~fm~~LL~lf~ 366 (680)
+++.++...++ .++++++.+++.|+..... +..-..++..++..++
T Consensus 356 ~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~~s~~~~~I~~~lel~~ 404 (757)
T COG5096 356 ILLELIYYIAENHIDAEMVSEAIKALGDLASKAESSVNDCISELLELLE 404 (757)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhcc
Confidence 55555555555 6788888888888887743 3334457777777776
No 78
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.58 E-value=0.00013 Score=57.53 Aligned_cols=55 Identities=25% Similarity=0.292 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 005727 128 PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEF 182 (680)
Q Consensus 128 p~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~f 182 (680)
|.+|..++..|+.+....+..+.+|+|++++.|..++.|++++||..|+.+|+.+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6899999999999998889999999999999999999999999999999998753
No 79
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=97.57 E-value=0.00053 Score=80.43 Aligned_cols=171 Identities=20% Similarity=0.246 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhh-------hhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc-cchhhhHHHHHH
Q 005727 5 YSFLFEIIVEQFLLYADLFFYS-------ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR-GDFIIFFNQIFD 76 (680)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~-------~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~-~~il~~f~eIfd 76 (680)
.+-+|++|.--+....+-=+.+ .++...|+|.+...+.-.+..+|--=.++|.++.+... .-+++.++.++|
T Consensus 833 aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlP 912 (1030)
T KOG1967|consen 833 AAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLP 912 (1030)
T ss_pred HHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHH
Confidence 3556777765444333222222 35677899999999985555555555677777765543 345699999999
Q ss_pred HHHHhhcCCChhHHHHHHHHHHHHHHHhhccc---cccHhhhHHHHHHHhcCCC---HHHHHHHHHHHHHhhc-CCchhh
Q 005727 77 ALCKLSADSDANVQSAAHLLDRLVKDIVTESD---QFSIEEFIPLLRERMNVLN---PYVRQFLVGWITVLDS-VPDIDM 149 (680)
Q Consensus 77 ~L~kL~aD~d~~Vr~gA~~Ldrllkdiv~es~---~f~L~~fIP~L~e~i~~~n---p~vR~~avswI~~L~s-ip~~~L 149 (680)
-|...++=+|..||-.+. +.+++.+.+++ .-.++.++|.+..--.+.+ --||..|+++++.+.. .|...+
T Consensus 913 LLLq~Ls~~D~~v~vstl---~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l 989 (1030)
T KOG1967|consen 913 LLLQALSMPDVIVRVSTL---RTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSL 989 (1030)
T ss_pred HHHHhcCCCccchhhhHh---hhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccc
Confidence 999999999999987772 24455555543 3457889999988777665 4799999999999998 888999
Q ss_pred hhchHHHHHHHHHhcCCCChhHHHHHHHH
Q 005727 150 LGFLPDFLDGLFNMLSDSSHEIRQQADSA 178 (680)
Q Consensus 150 i~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~ 178 (680)
.+|-|..+.+|.+.|.|+.+-||++|..+
T Consensus 990 ~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 990 LSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred ccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 99999999999999999999999998655
No 80
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.57 E-value=0.00068 Score=71.97 Aligned_cols=307 Identities=18% Similarity=0.150 Sum_probs=184.6
Q ss_pred hHHHHhhccCCCCHHHHHHHHHHHHHHHH---hhccchhhhHHHHHHHHHHhhcCC-C--hhHHHHHHHHHHHHHHHhhc
Q 005727 33 IVPPVLNSFSDQDSRVRYYACEALYNIAK---VVRGDFIIFFNQIFDALCKLSADS-D--ANVQSAAHLLDRLVKDIVTE 106 (680)
Q Consensus 33 Iv~~VL~~l~D~d~rVR~~A~eaL~nI~k---v~~~~il~~f~eIfd~L~kL~aD~-d--~~Vr~gA~~Ldrllkdiv~e 106 (680)
-+|-.+.-|.+++..||..|.=||.||+. .||+.++.+ ..++.|..++..+ . ..+|++.-.|..++..---.
T Consensus 158 AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~--galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~ 235 (526)
T COG5064 158 AVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQC--GALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP 235 (526)
T ss_pred chHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhc--CchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCC
Confidence 46778889999999999999999999963 344444422 2445555544322 2 56888888889888744434
Q ss_pred cccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHH-HHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q 005727 107 SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPD-FLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (680)
Q Consensus 107 s~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~-~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~e 185 (680)
.+.-.+..-+|.|...+|..+|++-.-|+=.|..+...|...+-..++. +.+.|..+|+.++..|..-+-+..+..+..
T Consensus 236 P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG 315 (526)
T COG5064 236 PDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTG 315 (526)
T ss_pred CchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeec
Confidence 4455678899999999999999999999999999988887666555553 344577888888877766553333332211
Q ss_pred hhcCCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccc--hHhHHHHHhhhhcCCchhHHHHHHHHHH
Q 005727 186 IKNSPSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY--YADILGAILPCISDKEEKIRVVARETNE 262 (680)
Q Consensus 186 i~~~~~~d-~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pf--Lp~LLp~LL~~Lsds~~eIR~~A~~~n~ 262 (680)
-.....+= --..++.+..-+.++.+.+|.+||-.|+.+- .+...=+.+ =..++|.+...|+..+-.+|+.|+=+..
T Consensus 316 ~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNIT-AGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAis 394 (526)
T COG5064 316 SDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNIT-AGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAIS 394 (526)
T ss_pred CccceehheecccHHHHHHHhcChhhhhhhhhheeecccc-cCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0234455555678888899999997776542 222111111 1356788888899888888888876543
Q ss_pred HHHHhccCCCCCCChH---------hHHHHHHHhcCCCc---HHHHHHHHHHHHHHHhhC----hhhH---hhhhH--HH
Q 005727 263 ELRAIKADPADGFDVG---------PILSIATRQLSSEW---EATRIEALHWISTLLNRH----RTEV---LHFLN--DI 321 (680)
Q Consensus 263 ~Ll~~v~~~~~~ldl~---------~iL~vL~~~L~~~~---~~tR~aaL~WL~~L~~~~----p~~~---~~~l~--~l 321 (680)
..+. .+.+.+ ..++.|...|.-.. .++.+.|+.-+....+.. +..+ ..|.+ +.
T Consensus 395 Nats------gg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Agg 468 (526)
T COG5064 395 NATS------GGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGG 468 (526)
T ss_pred hhhc------cccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhccc
Confidence 2211 112222 33444555554222 334455555444444332 1111 12222 11
Q ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHhh
Q 005727 322 FDTLLKALSDP-SDEVVLLVLEVHACIAK 349 (680)
Q Consensus 322 ~p~LL~~LsD~-s~eV~~~al~lLa~Is~ 349 (680)
+ -.+..|.|. +..|-.+|...+-++.+
T Consensus 469 m-d~I~~~Q~s~n~~iy~KAYsIIe~fFg 496 (526)
T COG5064 469 M-DAIHGLQDSVNRTIYDKAYSIIEKFFG 496 (526)
T ss_pred H-HHHHHhhhccccHHHHHHHHHHHHHcc
Confidence 2 233344444 56677788877777663
No 81
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.2 Score=58.29 Aligned_cols=230 Identities=17% Similarity=0.188 Sum_probs=143.9
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCC
Q 005727 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD 193 (680)
Q Consensus 114 ~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d 193 (680)
.+-+-++..+++..|++|.-||..++.+---.+..+-+.+|.+.. -|.||+|.|..+|-+.+-++.+ +.|..+
T Consensus 144 DLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~E----kLeDpDp~V~SAAV~VICELAr---KnPkny 216 (877)
T KOG1059|consen 144 DLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVE----KLEDPDPSVVSAAVSVICELAR---KNPQNY 216 (877)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHH----hccCCCchHHHHHHHHHHHHHh---hCCccc
Confidence 356777888899999999999999997666666677788877766 7899999999998777555554 444433
Q ss_pred hHHHHHHHHHhcC--CCCHH-HHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHH-hcc
Q 005727 194 YGRMAEILVQRAA--SPDEF-TRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRA-IKA 269 (680)
Q Consensus 194 ~~~II~iLl~~~~--s~d~~-irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~-~v~ 269 (680)
+ ++.|.+-.-+. +.++- |+. |.-|. .+.|+=|++-.-+++-+.+--. +..|....-+-.. .+.
T Consensus 217 L-~LAP~ffkllttSsNNWmLIKi-----iKLF~-----aLtplEPRLgKKLieplt~li~--sT~AmSLlYECvNTVVa 283 (877)
T KOG1059|consen 217 L-QLAPLFYKLLVTSSNNWVLIKL-----LKLFA-----ALTPLEPRLGKKLIEPITELME--STVAMSLLYECVNTVVA 283 (877)
T ss_pred c-cccHHHHHHHhccCCCeehHHH-----HHHHh-----hccccCchhhhhhhhHHHHHHH--hhHHHHHHHHHHHHhee
Confidence 2 22222222211 12221 222 22222 3455555544433333321100 1112221111111 111
Q ss_pred C-CCCC-CChHhH----HHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHH
Q 005727 270 D-PADG-FDVGPI----LSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEV 343 (680)
Q Consensus 270 ~-~~~~-ldl~~i----L~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~l 343 (680)
. -..+ .|-.+. +.-|..-+.++..-.|.-++..++-++...|..+..|-+ .+++||+|.++.||..|+.+
T Consensus 284 ~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kd----lIlrcL~DkD~SIRlrALdL 359 (877)
T KOG1059|consen 284 VSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKD----LILRCLDDKDESIRLRALDL 359 (877)
T ss_pred ehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHH----HHHHHhccCCchhHHHHHHH
Confidence 1 0111 133333 334555556666778999999999999999999988865 46799999999999999999
Q ss_pred HHHHhhccchHHHHHHHHHHhhccc
Q 005727 344 HACIAKDLQHFRQLVVFLVHNFRVD 368 (680)
Q Consensus 344 La~Is~~~~~F~~fm~~LL~lf~~d 368 (680)
|..+.+ ++.+..++..|+.++...
T Consensus 360 l~gmVs-kkNl~eIVk~LM~~~~~a 383 (877)
T KOG1059|consen 360 LYGMVS-KKNLMEIVKTLMKHVEKA 383 (877)
T ss_pred HHHHhh-hhhHHHHHHHHHHHHHhc
Confidence 999984 677888899998888543
No 82
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.53 E-value=0.0031 Score=75.23 Aligned_cols=192 Identities=14% Similarity=0.132 Sum_probs=153.8
Q ss_pred HHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhh
Q 005727 73 QIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG 151 (680)
Q Consensus 73 eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~ 151 (680)
.+=+.+-..+.|++.--|+.| +.+-..++.-..+......+.+-..+.-+..|.|-.+-..+...|..++...+..+..
T Consensus 253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 253 KITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred hcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence 344445556788888777766 5544444433322233445667778888888999999999999999999988888899
Q ss_pred chHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcc-
Q 005727 152 FLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ- 230 (680)
Q Consensus 152 ~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~- 230 (680)
|--..++.+|..+.|..+.+|.++-.+++..+. ...+..+++.++..+.+.++.++..+..|++......+..
T Consensus 333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~ 406 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILN------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKT 406 (815)
T ss_pred HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcC
Confidence 999999999999999999999998888888775 4578999999999999999999999999999887665532
Q ss_pred -cccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccC
Q 005727 231 -LVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (680)
Q Consensus 231 -l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~ 270 (680)
...=..+++|.+.+...|.+++||.+|.++...+++..++
T Consensus 407 ~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge 447 (815)
T KOG1820|consen 407 VEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE 447 (815)
T ss_pred cchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence 2334678999999999999999999999999888877653
No 83
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=97.53 E-value=0.0027 Score=75.79 Aligned_cols=197 Identities=16% Similarity=0.167 Sum_probs=150.0
Q ss_pred hhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccch-hhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHh
Q 005727 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF-IIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIV 104 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~i-l~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv 104 (680)
...+..+.+.+...+.|+++.=|..|.|.+..+.+..++++ ..+.+.+.-.+-...-|.+-+|-.-| ..|..+.+..-
T Consensus 248 ~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr 327 (815)
T KOG1820|consen 248 VDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLR 327 (815)
T ss_pred hhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcc
Confidence 34567788889999999999999999999988877666333 35555555555555678777655444 55555555333
Q ss_pred hccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 005727 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (680)
Q Consensus 105 ~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ 184 (680)
..... ......|.+++++.+..+.+|..++.++..+... ..+..+.+.+..++.+.+|.+|..+...+++.++
T Consensus 328 ~~~~~-~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~ 400 (815)
T KOG1820|consen 328 PLFRK-YAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLR 400 (815)
T ss_pred hhhHH-HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Confidence 32211 2345689999999999999999999999987763 3455556666668999999999999999999998
Q ss_pred HhhcC--CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcc
Q 005727 185 EIKNS--PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ 230 (680)
Q Consensus 185 ei~~~--~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~ 230 (680)
..... +...+..+++.++.+..+.+++||..|.+.+..+..+.|+.
T Consensus 401 ~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~ 448 (815)
T KOG1820|consen 401 KLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEE 448 (815)
T ss_pred hcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHH
Confidence 87621 23368999999999999999999999999999998887755
No 84
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.52 E-value=0.052 Score=61.46 Aligned_cols=365 Identities=14% Similarity=0.106 Sum_probs=204.7
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccccHh
Q 005727 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIE 113 (680)
Q Consensus 35 ~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L~ 113 (680)
=.+++.|+++|.-.|...-.++..+.++..+.+ ...+.|..-+- ...+-.||--| ..|-+. +.+...+
T Consensus 68 f~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvl-m~tssiMkD~~---~g~~~~~kp~AiRsL~~V----id~~tv~--- 136 (898)
T COG5240 68 FAILKLFQHKDLYLRQCVYSAIKELSKLTEDVL-MGTSSIMKDLN---GGVPDDVKPMAIRSLFSV----IDGETVY--- 136 (898)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHhhcchhhh-HHHHHHHHhhc---cCCccccccHHHHHHHHh----cCcchhh---
Confidence 357889999999999977666666655443322 22223322221 22222455555 333332 2233333
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCC------------hhHHHHHHHHHHH
Q 005727 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSS------------HEIRQQADSALWE 181 (680)
Q Consensus 114 ~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~------------~dVR~~a~~~L~~ 181 (680)
.|=..|...+-+..+.+|..++-.-+.|..+.....-.+..+.-+....+-+-|+ +-..- .+|+-
T Consensus 137 ~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqY---HalGl 213 (898)
T COG5240 137 DFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQY---HALGL 213 (898)
T ss_pred hHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHH---HHHHH
Confidence 3445566777888999999988888888777766666666666555554333322 11112 22442
Q ss_pred HHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHH
Q 005727 182 FLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETN 261 (680)
Q Consensus 182 fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n 261 (680)
+- .+++.-....-++++.+.....-.+......-+..+.+++.-.+ .++.++.|.+-.-+++..+.+.-.+.++.
T Consensus 214 Ly-q~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~----q~~~q~rpfL~~wls~k~emV~lE~Ar~v 288 (898)
T COG5240 214 LY-QSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENS----QALLQLRPFLNSWLSDKFEMVFLEAARAV 288 (898)
T ss_pred HH-HHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHhCh----HHHHHHHHHHHHHhcCcchhhhHHHHHHH
Confidence 22 23222112222333333332222222111222233333333332 23445555555566666555443333332
Q ss_pred HHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHH
Q 005727 262 EELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVL 341 (680)
Q Consensus 262 ~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al 341 (680)
-.+ ..+.-..-++++.+.+|..-|.+....+|-+|++.|..++.+.|+.+.--..++ -...+|..-.+-.-|.
T Consensus 289 ~~~---~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~ev----EsLIsd~Nr~IstyAI 361 (898)
T COG5240 289 CAL---SEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEV----ESLISDENRTISTYAI 361 (898)
T ss_pred HHH---HHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhH----HHHhhcccccchHHHH
Confidence 221 111112235789999999999999999999999999999999999876544332 2233465544444555
Q ss_pred HHHHHHhhccchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcChh--hHHHHHHHhhcccCChhHHHHHHHHHHHH
Q 005727 342 EVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAE--RVYRELSTILEGEADLDFACTMVQALNLI 419 (680)
Q Consensus 342 ~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~e--~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~i 419 (680)
.+|-+-+ +++..+..|.-+...+++-.....--.--.+|.||.+.+.+ .+...|.++|..+..++|-.-||..+.-+
T Consensus 362 TtLLKTG-t~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~ 440 (898)
T COG5240 362 TTLLKTG-TEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDA 440 (898)
T ss_pred HHHHHcC-chhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 5555443 34444444444444443322211222334689999999884 56778899998889999999999999887
Q ss_pred HhchHHH
Q 005727 420 LLTSSEL 426 (680)
Q Consensus 420 LLTa~EL 426 (680)
.-.-|+-
T Consensus 441 ~~~~p~s 447 (898)
T COG5240 441 MENDPDS 447 (898)
T ss_pred HhhCchH
Confidence 7555444
No 85
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.51 E-value=0.065 Score=63.51 Aligned_cols=278 Identities=17% Similarity=0.170 Sum_probs=174.3
Q ss_pred hhhhhhhHHHHhhccC-CCCHHHHHHHHHHHHHHHHhhcc-chhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHH
Q 005727 27 ETILQQIVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRG-DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDI 103 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~-D~d~rVR~~A~eaL~nI~kv~~~-~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdi 103 (680)
.+.+..++..-+..++ |.-+-+|-.|+.+..-.. +. -+.+..|.|+|+|..++++....|-+.- +.|...+|
T Consensus 485 ~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~-- 559 (1005)
T KOG2274|consen 485 PQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVK-- 559 (1005)
T ss_pred hhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc---CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhc--
Confidence 4445555544455553 666777777777653332 32 2346678888888888888877665544 44333332
Q ss_pred hhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 005727 104 VTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (680)
Q Consensus 104 v~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL 183 (680)
-..+| +..++ ....|.++--..+...|| -|-..++.++.+++
T Consensus 560 --~dpef-----------------~as~~-----------------skI~P~~i~lF~k~s~DP--~V~~~~qd~f~el~ 601 (1005)
T KOG2274|consen 560 --LDPEF-----------------AASME-----------------SKICPLTINLFLKYSEDP--QVASLAQDLFEELL 601 (1005)
T ss_pred --cChhh-----------------hhhhh-----------------cchhHHHHHHHHHhcCCc--hHHHHHHHHHHHHH
Confidence 00000 00000 123344444444555665 56666666766666
Q ss_pred HHhhcCCCCChHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHHhcCccccc-chHhHHHHHhhhhcCC-chhHHHHH
Q 005727 184 QEIKNSPSVDYGRMAEILVQRAASPD----EFTRLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDK-EEKIRVVA 257 (680)
Q Consensus 184 ~ei~~~~~~d~~~II~iLl~~~~s~d----~~irl~Al~WL~e~~~l~~~~l~p-fLp~LLp~LL~~Lsds-~~eIR~~A 257 (680)
+ +....+..-...||.+++-++.++ ......|+.-|..+++-.|..+-. ++....|++.+|.-++ +.+.-..|
T Consensus 602 q-~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~ 680 (1005)
T KOG2274|consen 602 Q-IAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNA 680 (1005)
T ss_pred H-HHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhH
Confidence 6 323334444556677776666655 556778888999898888777433 4667789999988766 44566667
Q ss_pred HHHHHHHHHh----ccC--CCCCCChHhHHHHHHHhcCCCc-HHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcC
Q 005727 258 RETNEELRAI----KAD--PADGFDVGPILSIATRQLSSEW-EATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS 330 (680)
Q Consensus 258 ~~~n~~Ll~~----v~~--~~~~ldl~~iL~vL~~~L~~~~-~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~Ls 330 (680)
.+|...+... +.. ...+.++--++.++.+.|.-+. ..+-.-+-..+..|..+.+..+-|-++.++.+.++.|.
T Consensus 681 ~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq 760 (1005)
T KOG2274|consen 681 TECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQ 760 (1005)
T ss_pred HHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence 7777654433 111 1234567889999997775433 22444555788899999999999999999999998887
Q ss_pred CC-CHHHHHHHHHHHHHHh
Q 005727 331 DP-SDEVVLLVLEVHACIA 348 (680)
Q Consensus 331 D~-s~eV~~~al~lLa~Is 348 (680)
.. ...|++.-+-+++.+.
T Consensus 761 ~ae~lsviQsLi~VfahL~ 779 (1005)
T KOG2274|consen 761 QAETLSVIQSLIMVFAHLV 779 (1005)
T ss_pred HhhhHHHHHHHHHHHHHHh
Confidence 65 4677776667777766
No 86
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.48 E-value=0.051 Score=64.43 Aligned_cols=321 Identities=18% Similarity=0.221 Sum_probs=163.0
Q ss_pred HhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHH-----HHHhhccccc
Q 005727 37 VLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLV-----KDIVTESDQF 110 (680)
Q Consensus 37 VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrll-----kdiv~es~~f 110 (680)
.-..+..++.-.| .|...|.|++...+.+..-.=..++..|.+++...+..+.-.+ ..|.++. |+-+.+++
T Consensus 255 ~~~l~~kQeqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~g-- 331 (708)
T PF05804_consen 255 LQTLIRKQEQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESG-- 331 (708)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcC--
Confidence 3333444555555 4555688887555443322235677888888876666666555 5565553 44444444
Q ss_pred cHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCch--hhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhc
Q 005727 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI--DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (680)
Q Consensus 111 ~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~--~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~ 188 (680)
++|.|...+..+++..+..++..+.+|..-+.. .|+. -.+++.|..++.|++ .|..|...|-.+-..=+.
T Consensus 332 ----iV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~--~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~ 403 (708)
T PF05804_consen 332 ----IVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVS--LGLIPKLVELLKDPN--FREVALKILYNLSMDDEA 403 (708)
T ss_pred ----CHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHH--CCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhh
Confidence 799999999999999999999999998766542 2322 123445555666653 444443333333211111
Q ss_pred CCCCChHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHh--------cCcccccc-------hHhHHHHHhhhhcCCchh
Q 005727 189 SPSVDYGRMAEILVQRAA-SPDEFTRLTAITWINEFVKL--------GGDQLVPY-------YADILGAILPCISDKEEK 252 (680)
Q Consensus 189 ~~~~d~~~II~iLl~~~~-s~d~~irl~Al~WL~e~~~l--------~~~~l~pf-------Lp~LLp~LL~~Lsds~~e 252 (680)
...+...+.++.++..+- .+++.+...++..+-.+..- .|..+-.. -..++=-++.+++..++.
T Consensus 404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~ 483 (708)
T PF05804_consen 404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGP 483 (708)
T ss_pred HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCch
Confidence 111112223333333221 12333322211111110000 01111111 111111233344433333
Q ss_pred HHHHHHHHHHHHHHhccCC-----------------CCCCChH------hHHHHHHHhcCCC--cHHHHHHHHHHHHHHH
Q 005727 253 IRVVARETNEELRAIKADP-----------------ADGFDVG------PILSIATRQLSSE--WEATRIEALHWISTLL 307 (680)
Q Consensus 253 IR~~A~~~n~~Ll~~v~~~-----------------~~~ldl~------~iL~vL~~~L~~~--~~~tR~aaL~WL~~L~ 307 (680)
.+.......+.+.+.+... ...+|+. .+++.|...|... .......+..|+|.++
T Consensus 484 ~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla 563 (708)
T PF05804_consen 484 LKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA 563 (708)
T ss_pred HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH
Confidence 3333333333333333221 0123332 4666788888533 3457888888999777
Q ss_pred hhChhhHhhh--hHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhhccchHH------HHHHHHHHhhcccch
Q 005727 308 NRHRTEVLHF--LNDIFDTLLKALSDP--SDEVVLLVLEVHACIAKDLQHFR------QLVVFLVHNFRVDNS 370 (680)
Q Consensus 308 ~~~p~~~~~~--l~~l~p~LL~~LsD~--s~eV~~~al~lLa~Is~~~~~F~------~fm~~LL~lf~~d~~ 370 (680)
.- + +-.+. -.++++.|+..|+.. ++|.+...+.++.++-.+++-.+ .+..-|+.++++.+.
T Consensus 564 ~d-~-~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~ 634 (708)
T PF05804_consen 564 SD-P-ECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNA 634 (708)
T ss_pred CC-H-HHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCH
Confidence 42 1 11222 246788888887754 57888888888887764332222 255567777766554
No 87
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.48 E-value=0.0005 Score=58.89 Aligned_cols=85 Identities=29% Similarity=0.330 Sum_probs=66.8
Q ss_pred HHHHhhcc-CCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhcccccc
Q 005727 34 VPPVLNSF-SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFS 111 (680)
Q Consensus 34 v~~VL~~l-~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~ 111 (680)
+|.+++.+ +|+|+.||..|+.++.++. =+++.+.|..++.|+++.||..| ..|.++ .
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i-----------~ 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI-----------G 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC-----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh-----------C
Confidence 46778888 8999999999998886432 24778889998999999999999 665553 2
Q ss_pred HhhhHHHHHHHhcC-CCHHHHHHHHHHHH
Q 005727 112 IEEFIPLLRERMNV-LNPYVRQFLVGWIT 139 (680)
Q Consensus 112 L~~fIP~L~e~i~~-~np~vR~~avswI~ 139 (680)
-+..+|.|.+.+.+ .+..+|..++..++
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 35579999998876 45677999888764
No 88
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.47 E-value=0.0011 Score=56.74 Aligned_cols=86 Identities=24% Similarity=0.235 Sum_probs=68.3
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCh
Q 005727 116 IPLLRERM-NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDY 194 (680)
Q Consensus 116 IP~L~e~i-~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~ 194 (680)
||.|.+.+ .+++|.+|..++..++.+ .-|+.++.|..++.|+++.||.+|..+|+.+- -
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----------GDPEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 67888888 899999999999999832 13467888888999999999999999888663 2
Q ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHH
Q 005727 195 GRMAEILVQRAASP-DEFTRLTAITWIN 221 (680)
Q Consensus 195 ~~II~iLl~~~~s~-d~~irl~Al~WL~ 221 (680)
+..++.|...+.+. +..+|..|+..|+
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 66888888888775 4567888877653
No 89
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.34 E-value=0.035 Score=62.82 Aligned_cols=289 Identities=11% Similarity=0.049 Sum_probs=148.4
Q ss_pred HHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhh
Q 005727 71 FNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM 149 (680)
Q Consensus 71 f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~L 149 (680)
+.+.-+-|-..++|.-..|.-.| ..+-++...-+ +.-.++.-+..|+..+.+.+...|-.|+..++.+....|.-.
T Consensus 262 ~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv---~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv 338 (898)
T COG5240 262 LLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENV---GSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV 338 (898)
T ss_pred HHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhcc---CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee
Confidence 34444445555666655554333 54444433322 233466778889999999999999999999999998877655
Q ss_pred hhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCc
Q 005727 150 LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD 229 (680)
Q Consensus 150 i~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~ 229 (680)
...=+++=. +.+|.|+.+-.-| +..+++ ...+-.++.+++.+...+.+-.+..+..++..+..++-.-|.
T Consensus 339 ~vcN~evEs----LIsd~Nr~IstyA---ITtLLK---TGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~ 408 (898)
T COG5240 339 SVCNKEVES----LISDENRTISTYA---ITTLLK---TGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPS 408 (898)
T ss_pred eecChhHHH----HhhcccccchHHH---HHHHHH---cCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcH
Confidence 555555443 7789988887765 444554 223445777777777777665444444444444444333332
Q ss_pred ccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Q 005727 230 QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR 309 (680)
Q Consensus 230 ~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~ 309 (680)
.=..|+.=+...++. ...-+.++.+.++..+.++.+.+. -+..+..|+....+-.. -.-+++.|+.|++.
T Consensus 409 k~~s~l~FL~~~L~~---eGg~eFK~~~Vdaisd~~~~~p~s-----kEraLe~LC~fIEDcey--~~I~vrIL~iLG~E 478 (898)
T COG5240 409 KKLSYLDFLGSSLLQ---EGGLEFKKYMVDAISDAMENDPDS-----KERALEVLCTFIEDCEY--HQITVRILGILGRE 478 (898)
T ss_pred HHHHHHHHHHHHHHh---cccchHHHHHHHHHHHHHhhCchH-----HHHHHHHHHHHHhhcch--hHHHHHHHHHhccc
Confidence 212222212222221 223344444444444333332111 12334444444433221 11233344444444
Q ss_pred ChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh--hccchHHHHHHHHHHhhccc-chhHHhHHHHHHHHHH
Q 005727 310 HRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA--KDLQHFRQLVVFLVHNFRVD-NSLLEKRGALIIRRLC 384 (680)
Q Consensus 310 ~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is--~~~~~F~~fm~~LL~lf~~d-~~lLe~rg~~IIrqLc 384 (680)
-|..-.| ..++-.+...+-=+..-||..|+++|++++ .++.....-+.+++++..+| ..-...|++|..|.+-
T Consensus 479 gP~a~~P--~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 479 GPRAKTP--GKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred CCCCCCc--chHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 4333222 122233333333345556666666666665 23445555555555555443 3334456666666554
No 90
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.31 E-value=0.013 Score=57.93 Aligned_cols=111 Identities=20% Similarity=0.161 Sum_probs=87.6
Q ss_pred chhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhc
Q 005727 250 EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKAL 329 (680)
Q Consensus 250 ~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~L 329 (680)
++.||.-+..+.+++..-..+ -++..++.+...|.|+++.+|..|+.-+..|.... +...-+.++..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~-----~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d---~ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN-----LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILED---MIKVKGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH-----HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC---ceeehhhhhHHHHHHH
Confidence 467888888887765443211 13567778999999999999999999999888764 4445566778888999
Q ss_pred CCCCHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHhhccc
Q 005727 330 SDPSDEVVLLVLEVHACIAK--DLQHFRQLVVFLVHNFRVD 368 (680)
Q Consensus 330 sD~s~eV~~~al~lLa~Is~--~~~~F~~fm~~LL~lf~~d 368 (680)
.|++++|+..|...+.++.. +.+-|...+..++..+.+.
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~ 113 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNC 113 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCc
Confidence 99999999999999999995 3677888888888888764
No 91
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=97.25 E-value=0.0097 Score=65.85 Aligned_cols=151 Identities=18% Similarity=0.229 Sum_probs=107.1
Q ss_pred hhhhhhhHHHHhhccCC-CCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHh---hcCCChhHHHHH-HHHHHHHH
Q 005727 27 ETILQQIVPPVLNSFSD-QDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKL---SADSDANVQSAA-HLLDRLVK 101 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~D-~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL---~aD~d~~Vr~gA-~~Ldrllk 101 (680)
++|..+|+..++..++| .|...|+-|...|.. +++..--..|+..--+++|. ..|++..|-..| +..-+++-
T Consensus 324 eq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~---ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~la 400 (516)
T KOG2956|consen 324 EQHFAEILLLLLEVLSDSEDEIIKKLALRVLRE---MLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLA 400 (516)
T ss_pred HHHHHHHHHHHHHHHccchhhHHHHHHHHHHHH---HHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 67889999999999999 777777777655544 44433223455555556654 467777666666 55444433
Q ss_pred HHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHh-hcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 005727 102 DIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVL-DSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALW 180 (680)
Q Consensus 102 div~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L-~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~ 180 (680)
.+. +.. -|-.+..+|...+..+-..++..+..+ ..++..++...+|++.|++++--.-++..||+.|.-||.
T Consensus 401 s~~---P~~----~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLV 473 (516)
T KOG2956|consen 401 SHL---PLQ----CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLV 473 (516)
T ss_pred hhC---chh----HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHH
Confidence 222 112 233444444446666667778788755 458888899999999999999999999999999999999
Q ss_pred HHHHHhh
Q 005727 181 EFLQEIK 187 (680)
Q Consensus 181 ~fL~ei~ 187 (680)
.+...++
T Consensus 474 amv~~vG 480 (516)
T KOG2956|consen 474 AMVNRVG 480 (516)
T ss_pred HHHHHHh
Confidence 9998776
No 92
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.25 E-value=0.0025 Score=67.75 Aligned_cols=228 Identities=18% Similarity=0.154 Sum_probs=152.1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcCCCCh---hHHHHHHHHHHHHHHHhhcC
Q 005727 115 FIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSDSSH---EIRQQADSALWEFLQEIKNS 189 (680)
Q Consensus 115 fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~L--p~~L~~Lf~lLsD~~~---dVR~~a~~~L~~fL~ei~~~ 189 (680)
-+|.+...+++.+..||..++=.++++..-.+ .+-.|+ -..+++++.++..+.+ -+|.++. .|..+++ ++.
T Consensus 158 AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~-~~RD~vL~~galeplL~ll~ss~~~ismlRn~TW-tLSNlcR--Gkn 233 (526)
T COG5064 158 AVPLFIQLLSSTEDDVREQAVWALGNIAGDSE-GCRDYVLQCGALEPLLGLLLSSAIHISMLRNATW-TLSNLCR--GKN 233 (526)
T ss_pred chHHHHHHHcCchHHHHHHHHHHhccccCCch-hHHHHHHhcCchHHHHHHHHhccchHHHHHHhHH-HHHHhhC--CCC
Confidence 36777788889999999999999998875443 122222 1345666666655444 4567664 5666665 345
Q ss_pred CCCC---hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccch-HhHHHHHhhhhcCCchhHHHHHHHHHHHHH
Q 005727 190 PSVD---YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY-ADILGAILPCISDKEEKIRVVARETNEELR 265 (680)
Q Consensus 190 ~~~d---~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfL-p~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll 265 (680)
|.++ +...+|+|-.-+.+-|+++-.-|+-.|+-+.+.+.+..-.-+ .++.+-++..|++++..|..-|.+..+
T Consensus 234 P~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vG--- 310 (526)
T COG5064 234 PPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVG--- 310 (526)
T ss_pred CCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhc---
Confidence 6665 567789999999999999988888777766554433222112 134455777777766555443433333
Q ss_pred HhccCCCC----CCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhH-HHHHHHHHhcCCCCHHHHHHH
Q 005727 266 AIKADPAD----GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN-DIFDTLLKALSDPSDEVVLLV 340 (680)
Q Consensus 266 ~~v~~~~~----~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~-~l~p~LL~~LsD~s~eV~~~a 340 (680)
..+..... -++ ...++.+...|.++.+..|..+.=-+..+-.+..+.+...++ .++|.|++.|+-.+-.+++.|
T Consensus 311 NIVTG~D~QTqviI~-~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEA 389 (526)
T COG5064 311 NIVTGSDDQTQVIIN-CGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEA 389 (526)
T ss_pred CeeecCccceehhee-cccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 22221100 012 245667777788888888877776677787787777766555 689999999999888899999
Q ss_pred HHHHHHHhhc
Q 005727 341 LEVHACIAKD 350 (680)
Q Consensus 341 l~lLa~Is~~ 350 (680)
||.++...++
T Consensus 390 CWAisNatsg 399 (526)
T COG5064 390 CWAISNATSG 399 (526)
T ss_pred HHHHHhhhcc
Confidence 9999988754
No 93
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.23 E-value=0.13 Score=59.20 Aligned_cols=290 Identities=16% Similarity=0.124 Sum_probs=152.8
Q ss_pred HHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhc
Q 005727 74 IFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF 152 (680)
Q Consensus 74 Ifd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~ 152 (680)
-+..+...+.- +..+|.-| ..+.+.+|....-. +.-|..+.....|++..||..++.-|-.++.-.+ .+
T Consensus 24 ~y~~il~~~kg-~~k~K~Laaq~I~kffk~FP~l~-----~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~----~~ 93 (556)
T PF05918_consen 24 DYKEILDGVKG-SPKEKRLAAQFIPKFFKHFPDLQ-----EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP----EH 93 (556)
T ss_dssp HHHHHHHGGGS--HHHHHHHHHHHHHHHCC-GGGH-----HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-
T ss_pred HHHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhH-----HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH----HH
Confidence 34444444543 45566666 88888888665432 2246677777889999999999999888876543 58
Q ss_pred hHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHhcCc
Q 005727 153 LPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAA---SPDEFTRLTAITWINEFVKLGGD 229 (680)
Q Consensus 153 Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~---s~d~~irl~Al~WL~e~~~l~~~ 229 (680)
++.+.+.|.++|.-.++..+.++.++|..+++ .|-...+..+..++. +.|+.+|..++..|.+-+.--+.
T Consensus 94 v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~-------~d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~ 166 (556)
T PF05918_consen 94 VSKVADVLVQLLQTDDPVELDAVKNSLMSLLK-------QDPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKP 166 (556)
T ss_dssp HHHHHHHHHHHTT---HHHHHHHHHHHHHHHH-------H-HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred HhHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-------cCcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcH
Confidence 89999999999988888888888899888886 344445555555554 56788999999988765433333
Q ss_pred ccccc---h-HhHHHHHhhhhcCC-chhHHHHHHHHHHHHHHhccCCCC------CCChHhHHHHHHHhcC-CCc-HHHH
Q 005727 230 QLVPY---Y-ADILGAILPCISDK-EEKIRVVARETNEELRAIKADPAD------GFDVGPILSIATRQLS-SEW-EATR 296 (680)
Q Consensus 230 ~l~pf---L-p~LLp~LL~~Lsds-~~eIR~~A~~~n~~Ll~~v~~~~~------~ldl~~iL~vL~~~L~-~~~-~~tR 296 (680)
.+... . .-++..|.+.|.|- ..|.. .+|.+.....- .-....+++++.++.. +.. ..+=
T Consensus 167 ~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~--------l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD 238 (556)
T PF05918_consen 167 ELLTPQKEMEEFIVDEIKKVLQDVTAEEFE--------LFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSD 238 (556)
T ss_dssp TTS---HHHHHHHHHHHHHHCTT--HHHHH--------HHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSS
T ss_pred HHhhchHHHHHHHHHHHHHHHHhccHHHHH--------HHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcC
Confidence 33321 1 22344555666652 22221 12222221110 1113577787777663 111 1111
Q ss_pred HHHHH-HHHHHHhhChh-----hHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh--c----cchHHHHHHHHHHh
Q 005727 297 IEALH-WISTLLNRHRT-----EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK--D----LQHFRQLVVFLVHN 364 (680)
Q Consensus 297 ~aaL~-WL~~L~~~~p~-----~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~--~----~~~F~~fm~~LL~l 364 (680)
...++ ++.-+..-.|- .-..++.-+..-+++.++|=.++.+..-+.++++++. + .+.+..+...|++.
T Consensus 239 ~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~y 318 (556)
T PF05918_consen 239 PESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKY 318 (556)
T ss_dssp HHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHh
Confidence 12232 33222221111 1123333334445556666566666678899999983 1 34555555666666
Q ss_pred hcccc-------hhHHhHHHHHHHHHHhhcCh
Q 005727 365 FRVDN-------SLLEKRGALIIRRLCVLLDA 389 (680)
Q Consensus 365 f~~d~-------~lLe~rg~~IIrqLc~~L~~ 389 (680)
+.... ..+|+- -+.+.+|+...+.
T Consensus 319 mP~~~~~~~l~fs~vEcL-L~afh~La~k~p~ 349 (556)
T PF05918_consen 319 MPSKKTEPKLQFSYVECL-LYAFHQLARKSPN 349 (556)
T ss_dssp S----------HHHHHHH-HHHHHHHHTT-TH
T ss_pred CCCCCCCCcccchHhhHH-HHHHHHHhhhCcc
Confidence 65331 233442 5678888887664
No 94
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=97.21 E-value=0.2 Score=64.86 Aligned_cols=315 Identities=12% Similarity=0.150 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHHHhhccchhhhHHHHHHHHHHh----hcCCChhHHHHHHHHHH---HHHHHhh--ccccccH-hhhHHH
Q 005727 49 RYYACEALYNIAKVVRGDFIIFFNQIFDALCKL----SADSDANVQSAAHLLDR---LVKDIVT--ESDQFSI-EEFIPL 118 (680)
Q Consensus 49 R~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL----~aD~d~~Vr~gA~~Ldr---llkdiv~--es~~f~L-~~fIP~ 118 (680)
|-+...-|..|+..-.+.+...|..+|+.+... .+.++..|+- .++|. +.-.... |...|.. ..|+.+
T Consensus 1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~--fAidsLrQLs~kfle~eEL~~f~FQkefLkP 1186 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAI--FAMDSLRQLSMKFLEREELANYNFQNEFMKP 1186 (1780)
T ss_pred chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHH--HHHHHHHHHHHHhcchhhhhchhHHHHHHHH
Confidence 556666665555443345556788888888763 2444445433 44553 3222221 1122222 246666
Q ss_pred HHHHhc-CCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhc-CC---CCC
Q 005727 119 LRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN-SP---SVD 193 (680)
Q Consensus 119 L~e~i~-~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~-~~---~~d 193 (680)
+..-|. ..++.+|..++.++..+.......+-.=...++..+-....|.++++-+.|-+.+....++.-. .+ .-.
T Consensus 1187 fe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~ 1266 (1780)
T PLN03076 1187 FVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTT 1266 (1780)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhH
Confidence 666554 5678999999999998877666666666777777766667788887766666666555444211 11 124
Q ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHHHHHH----HHhc--------------------------------CcccccchH
Q 005727 194 YGRMAEILVQRAASP-DEFTRLTAITWINEF----VKLG--------------------------------GDQLVPYYA 236 (680)
Q Consensus 194 ~~~II~iLl~~~~s~-d~~irl~Al~WL~e~----~~l~--------------------------------~~~l~pfLp 236 (680)
+...|..+....... +..+-++|+.-+..+ ++.. .++...++=
T Consensus 1267 F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~ 1346 (1780)
T PLN03076 1267 FTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWF 1346 (1780)
T ss_pred HHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHH
Confidence 678888888777544 355667776644322 1100 001112333
Q ss_pred hHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCC-------hHh----HHHHHHHhcC----------------
Q 005727 237 DILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD-------VGP----ILSIATRQLS---------------- 289 (680)
Q Consensus 237 ~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ld-------l~~----iL~vL~~~L~---------------- 289 (680)
.++-.+-....|..+|||..|..+.-+.++. .|..++ +.. +++.+.....
T Consensus 1347 pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~---yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~ 1423 (1780)
T PLN03076 1347 PLLAGLSELSFDPRPEIRKSALQVLFDTLRN---HGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQ 1423 (1780)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccc
Confidence 4455555556688999999988776655433 333333 222 2223322111
Q ss_pred ----CCcH--HHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-h-----ccchHHHH
Q 005727 290 ----SEWE--ATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA-K-----DLQHFRQL 357 (680)
Q Consensus 290 ----~~~~--~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is-~-----~~~~F~~f 357 (680)
...| .|-.-|++-+..+...+-+.+.+.+++++..|..|...+++.+..+.+..|.++. . +++.-..+
T Consensus 1424 ~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i 1503 (1780)
T PLN03076 1424 GELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEV 1503 (1780)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 0113 3566667777777777778888889999999999999999998888888777765 2 34556668
Q ss_pred HHHHHHhhccc
Q 005727 358 VVFLVHNFRVD 368 (680)
Q Consensus 358 m~~LL~lf~~d 368 (680)
+..+.++|...
T Consensus 1504 ~~~~~~lf~~T 1514 (1780)
T PLN03076 1504 VLSLKEAANAT 1514 (1780)
T ss_pred HHHHHHHHHHh
Confidence 88887777654
No 95
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=97.21 E-value=0.0004 Score=48.57 Aligned_cols=30 Identities=33% Similarity=0.437 Sum_probs=26.7
Q ss_pred hHHHHhhccCCCCHHHHHHHHHHHHHHHHh
Q 005727 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKV 62 (680)
Q Consensus 33 Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv 62 (680)
|+|.++++++|++++||++|++++.++++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999875
No 96
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.11 E-value=0.42 Score=59.72 Aligned_cols=39 Identities=10% Similarity=-0.015 Sum_probs=31.8
Q ss_pred CCcHHHHHHHHHHHHHHHhhChhhHh-hhhHHHHHHHHHh
Q 005727 290 SEWEATRIEALHWISTLLNRHRTEVL-HFLNDIFDTLLKA 328 (680)
Q Consensus 290 ~~~~~tR~aaL~WL~~L~~~~p~~~~-~~l~~l~p~LL~~ 328 (680)
.+++....+.+..|..++...|.=+. .|...+.|+|-..
T Consensus 1048 ~~~~~~~~~~lstL~~FskirP~Llt~khv~tL~PYL~s~ 1087 (1692)
T KOG1020|consen 1048 EESEVRLLAYLSTLFVFSKIRPQLLTKKHVITLQPYLTSK 1087 (1692)
T ss_pred ccchhHHHHHHHHHHHHHhcCchhccHHHHHHhhhHHhcc
Confidence 34455677888899999999999888 8999999988765
No 97
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.32 Score=57.39 Aligned_cols=362 Identities=18% Similarity=0.233 Sum_probs=217.5
Q ss_pred hHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHHHH-----------------
Q 005727 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHL----------------- 95 (680)
Q Consensus 33 Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA~~----------------- 95 (680)
|..-|+..+-.....++..-.|++|-|++ .+.-..||.+++.|++-.+..|-++-+|.-.
T Consensus 89 ikslIv~lMl~s~~~iQ~qlseal~~Ig~---~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSda 165 (960)
T KOG1992|consen 89 IKSLIVTLMLSSPFNIQKQLSEALSLIGK---RDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDA 165 (960)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhc---cccchhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHH
Confidence 44555666666678899999999998864 3444679999999998888888888887721
Q ss_pred --------HHHHHH---HHhhc---------c-c-----------------------------cccHhhhHHHHHHHhcC
Q 005727 96 --------LDRLVK---DIVTE---------S-D-----------------------------QFSIEEFIPLLRERMNV 125 (680)
Q Consensus 96 --------Ldrllk---div~e---------s-~-----------------------------~f~L~~fIP~L~e~i~~ 125 (680)
||+..+ ++... . + +-.+..+|+.+...+..
T Consensus 166 L~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~ 245 (960)
T KOG1992|consen 166 LWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTY 245 (960)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhc
Confidence 121111 11110 0 0 13456667777766663
Q ss_pred CCH-------------HHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHH--HHHHHHHHHHHHHhhcCC
Q 005727 126 LNP-------------YVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIR--QQADSALWEFLQEIKNSP 190 (680)
Q Consensus 126 ~np-------------~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR--~~a~~~L~~fL~ei~~~~ 190 (680)
.+| .+|..+|+.++......+.++-+++|+|......++.+.+++.| ..+++++. |+..+.+.+
T Consensus 246 ~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~-FLt~V~~r~ 324 (960)
T KOG1992|consen 246 DNPLLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQ-FLTSVSRRP 324 (960)
T ss_pred cCcccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHH-HHHHHHhhh
Confidence 332 67888999999999999999999999999999999999988888 55666666 444444332
Q ss_pred CC----ChHHHHHHHHHh---------------------------cCCCCHHH-HHHHHHHHHHHHHhcCcccccchHhH
Q 005727 191 SV----DYGRMAEILVQR---------------------------AASPDEFT-RLTAITWINEFVKLGGDQLVPYYADI 238 (680)
Q Consensus 191 ~~----d~~~II~iLl~~---------------------------~~s~d~~i-rl~Al~WL~e~~~l~~~~l~pfLp~L 238 (680)
+. .-++++.-+.+. +.-.|-.. |..|+..++.+++.-...+.+-+...
T Consensus 325 ~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~ 404 (960)
T KOG1992|consen 325 HYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSE 404 (960)
T ss_pred hhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 21 123333333332 22222222 56788899988887776766666666
Q ss_pred HHHHhhhhc-CCchh--HHHHHH------HHHHHHH-HhccCCCCCCChHhHH-HHHHHhcC----CCcHHHHHHHHHHH
Q 005727 239 LGAILPCIS-DKEEK--IRVVAR------ETNEELR-AIKADPADGFDVGPIL-SIATRQLS----SEWEATRIEALHWI 303 (680)
Q Consensus 239 Lp~LL~~Ls-ds~~e--IR~~A~------~~n~~Ll-~~v~~~~~~ldl~~iL-~vL~~~L~----~~~~~tR~aaL~WL 303 (680)
+..++..-+ ++..+ -++.|- ...+... .-+..+..-+|..+.. +.+...|. .+....|.++++.+
T Consensus 405 v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~ 484 (960)
T KOG1992|consen 405 VQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYI 484 (960)
T ss_pred HHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhccccee
Confidence 666666333 22211 111111 1111000 0111222234443322 33444443 34566799999988
Q ss_pred HHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh---hc-----------cchHHHHHHHHHHhhcccc
Q 005727 304 STLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA---KD-----------LQHFRQLVVFLVHNFRVDN 369 (680)
Q Consensus 304 ~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is---~~-----------~~~F~~fm~~LL~lf~~d~ 369 (680)
..+...-+. +|+=.++|.++.-|.-++..|.+-|--.+.++- ++ .+|-...+.+|.+.+..+.
T Consensus 485 ~~FR~ql~~---~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~ 561 (960)
T KOG1992|consen 485 YTFRNQLGK---EHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPG 561 (960)
T ss_pred eeecccCCh---HHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCc
Confidence 877776654 466689999999999999988887766666654 11 2455566666766665554
Q ss_pred hhHHh--HHHHHHHHHHhhcCh-----hhHHHHHHHhhcc
Q 005727 370 SLLEK--RGALIIRRLCVLLDA-----ERVYRELSTILEG 402 (680)
Q Consensus 370 ~lLe~--rg~~IIrqLc~~L~~-----e~Iy~~La~iL~~ 402 (680)
+ -|. -...|+|-+...=.+ ..+-+.|.++++.
T Consensus 562 ~-~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~ 600 (960)
T KOG1992|consen 562 K-AENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEE 600 (960)
T ss_pred c-cccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHH
Confidence 4 222 122355544443222 2345556666554
No 98
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.62 Score=52.37 Aligned_cols=215 Identities=14% Similarity=0.110 Sum_probs=142.9
Q ss_pred HHHHHHhhcCCChhHHHHHHHHHHHHHHHhhccccccHhhhHHHHHHHhc----CCCHHHHHHHHHHHHHhhcCCchhhh
Q 005727 75 FDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMN----VLNPYVRQFLVGWITVLDSVPDIDML 150 (680)
Q Consensus 75 fd~L~kL~aD~d~~Vr~gA~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~----~~np~vR~~avswI~~L~sip~~~Li 150 (680)
-+.+.++++|++-+ +.|+ .|+..++.+..+. -++.+...+. ...+.-|..-++-+..+..-+..+=.
T Consensus 183 ~~~~w~qls~~~~h-~~g~---trlqr~m~~~~~~-----~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~ 253 (533)
T KOG2032|consen 183 VSRRWSQLSDNDIH-RVGL---TRLQRFMACVQDL-----EMGKILAQLLSSITSEKENGRITDIAFFAELKRPKELDKT 253 (533)
T ss_pred ccchhhhcccCccc-HHHH---HHHHHHHHhhCCc-----cHHHHHhhcccccchhcccchHHHHHHHHHHhCccccccc
Confidence 34445556666553 3333 3333333332221 2444444443 33334444443333333332222223
Q ss_pred hchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHH-hcC
Q 005727 151 GFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP-DEFTRLTAITWINEFVK-LGG 228 (680)
Q Consensus 151 ~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~-d~~irl~Al~WL~e~~~-l~~ 228 (680)
..+.+++..+-+-.+||+..+|..|+.+|+......+.+...+...++..++..+.++ +++|+.+|+.-+..... +.+
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~ 333 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN 333 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh
Confidence 5788889999999999999999999999999887755444457888888888887766 47899999998877654 456
Q ss_pred cccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHH---HHHHhcCCCcHHHHHH
Q 005727 229 DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILS---IATRQLSSEWEATRIE 298 (680)
Q Consensus 229 ~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~---vL~~~L~~~~~~tR~a 298 (680)
.++.+|+=.+--.+-+...+.+++.|..|...-+.+.+..+.+....+.+++.+ -+.-++.+.+..+-.|
T Consensus 334 ~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~A 406 (533)
T KOG2032|consen 334 DDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARA 406 (533)
T ss_pred cchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHH
Confidence 788999888888888888899999999999999998888877666566665554 3445666766654333
No 99
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.08 E-value=0.49 Score=59.16 Aligned_cols=152 Identities=11% Similarity=0.170 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCC
Q 005727 211 FTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS 290 (680)
Q Consensus 211 ~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~ 290 (680)
++-.....|+..++... ..|..-+...+..|+..+..+...+|..|.+|...+ +..++.-+--+.+-..+...+.|
T Consensus 791 ~~d~~~a~li~~~la~~-r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~i---ve~Dp~vL~~~dvq~~Vh~R~~D 866 (1692)
T KOG1020|consen 791 FADDDDAKLIVFYLAHA-RSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMI---VEADPSVLSRPDVQEAVHGRLND 866 (1692)
T ss_pred cccchhHHHHHHHHHhh-hHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHH---HhcChHhhcCHHHHHHHHHhhcc
Confidence 44455667776554332 234555677788888888888889999999988743 33223333346777788889999
Q ss_pred CcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHH---HHHHHHHhhcc
Q 005727 291 EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQ---LVVFLVHNFRV 367 (680)
Q Consensus 291 ~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~~~~F~~---fm~~LL~lf~~ 367 (680)
++..+|+||++.+|...-..|+-+..|.+. +.....|++-.||+.++..+..|+...+.|.. +...++.+..+
T Consensus 867 ssasVREAaldLvGrfvl~~~e~~~qyY~~----i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~D 942 (1692)
T KOG1020|consen 867 SSASVREAALDLVGRFVLSIPELIFQYYDQ----IIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVND 942 (1692)
T ss_pred chhHHHHHHHHHHhhhhhccHHHHHHHHHH----HHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhcc
Confidence 999999999999999988888776665554 55666799999999999999999987777766 55556666666
Q ss_pred cch
Q 005727 368 DNS 370 (680)
Q Consensus 368 d~~ 370 (680)
++.
T Consensus 943 EEg 945 (1692)
T KOG1020|consen 943 EEG 945 (1692)
T ss_pred chh
Confidence 654
No 100
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=96.95 E-value=0.0069 Score=59.39 Aligned_cols=127 Identities=18% Similarity=0.221 Sum_probs=96.4
Q ss_pred cccchHhHHHHHhhhhcC------------------CchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCc
Q 005727 231 LVPYYADILGAILPCISD------------------KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW 292 (680)
Q Consensus 231 l~pfLp~LLp~LL~~Lsd------------------s~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~ 292 (680)
+.|+++.++|.+.....- ..-|+|++|.++...+++.+. +.+|+..+++.+...|.| +
T Consensus 3 i~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~---~~~~~~~~~~~v~~GL~D-~ 78 (169)
T PF08623_consen 3 IRPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCL---SRIDISEFLDRVEAGLKD-E 78 (169)
T ss_dssp TTTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTC---SSS-HHHHHHHHHHTTSS--
T ss_pred hHHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHH---HhCCHHHHHHHHHhhcCC-c
Confidence 568899999999886652 235899999999998888543 567899999999999998 8
Q ss_pred HHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcC----CC--------CHHHHHHHHHHHHHHh------hccc-h
Q 005727 293 EATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS----DP--------SDEVVLLVLEVHACIA------KDLQ-H 353 (680)
Q Consensus 293 ~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~Ls----D~--------s~eV~~~al~lLa~Is------~~~~-~ 353 (680)
..+|+-+..-+.-++..+|..+.+.++.+.+.+-+.|+ +. ..|..+.++++...+. +... -
T Consensus 79 ~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~~~ 158 (169)
T PF08623_consen 79 HDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESSPNK 158 (169)
T ss_dssp HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSSH-H
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccCHHH
Confidence 88999999999999999999999999999998888884 32 2355566777766663 1233 5
Q ss_pred HHHHHHHH
Q 005727 354 FRQLVVFL 361 (680)
Q Consensus 354 F~~fm~~L 361 (680)
|..|+..+
T Consensus 159 ~~~f~~~i 166 (169)
T PF08623_consen 159 WNEFVEWI 166 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 101
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.21 Score=58.34 Aligned_cols=257 Identities=18% Similarity=0.242 Sum_probs=138.9
Q ss_pred HHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhc
Q 005727 74 IFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF 152 (680)
Q Consensus 74 Ifd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~ 152 (680)
+=++.-|=+..|++=+|... ..|-++ .| +--++.++|.++.++.+++++||+.|+-+|..+-.. ...+++=
T Consensus 100 vcna~RkDLQHPNEyiRG~TLRFLckL-----kE--~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~-~~~L~pD 171 (948)
T KOG1058|consen 100 VCNAYRKDLQHPNEYIRGSTLRFLCKL-----KE--PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKN-FEHLIPD 171 (948)
T ss_pred HHHHHhhhccCchHhhcchhhhhhhhc-----Cc--HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhh-hhhhcCC
Confidence 33444444666766677544 332222 22 223678999999999999999999998888766555 3456666
Q ss_pred hHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHHhcCc
Q 005727 153 LPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP---DEFTRLTAITWINEFVKLGGD 229 (680)
Q Consensus 153 Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~---d~~irl~Al~WL~e~~~l~~~ 229 (680)
-|+++..- +..|.++..++.| |+--+ +.|=+.-++|+..+..+- ++..+...++.|...+...|.
T Consensus 172 apeLi~~f--L~~e~DpsCkRNA------Fi~L~----~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~ 239 (948)
T KOG1058|consen 172 APELIESF--LLTEQDPSCKRNA------FLMLF----TTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPA 239 (948)
T ss_pred hHHHHHHH--HHhccCchhHHHH------HHHHH----hcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHH
Confidence 67776654 3577788887765 32222 345566667776655433 366777777777766554333
Q ss_pred ccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHh
Q 005727 230 QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS-SEWEATRIEALHWISTLLN 308 (680)
Q Consensus 230 ~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~-~~~~~tR~aaL~WL~~L~~ 308 (680)
.= .+.+..|...|..+++.++-.| .+.+..+-.++ --+.+-.+.+...+. .+...++.-.++-|..+..
T Consensus 240 ~~----~~~i~~i~~lL~stssaV~fEa---a~tlv~lS~~p---~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~ 309 (948)
T KOG1058|consen 240 EK----ARYIRCIYNLLSSTSSAVIFEA---AGTLVTLSNDP---TALKAAASTYIDLLVKESDNNVKLIVLDRLSELKA 309 (948)
T ss_pred Hh----hHHHHHHHHHHhcCCchhhhhh---cceEEEccCCH---HHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhh
Confidence 32 2333444444444444443222 11111111100 001111111222121 1112245555555555552
Q ss_pred hChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHhh
Q 005727 309 RHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNF 365 (680)
Q Consensus 309 ~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~~~~F~~fm~~LL~lf 365 (680)
.. ...+.+++--+|+.|+-++-+|+++++..-..+++ ...+.+++.-|-+.+
T Consensus 310 ~~----~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvs-srNvediv~~Lkke~ 361 (948)
T KOG1058|consen 310 LH----EKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVS-SRNVEDIVQFLKKEV 361 (948)
T ss_pred hh----HHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhh-hccHHHHHHHHHHHH
Confidence 22 23456677778888888888888888887776663 223344444444433
No 102
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.87 E-value=0.34 Score=60.70 Aligned_cols=343 Identities=15% Similarity=0.154 Sum_probs=191.8
Q ss_pred hhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccch---hhhHHHHHHHHHH---hhcCC-ChhHHHHHHHHHHH
Q 005727 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF---IIFFNQIFDALCK---LSADS-DANVQSAAHLLDRL 99 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~i---l~~f~eIfd~L~k---L~aD~-d~~Vr~gA~~Ldrl 99 (680)
.++...++.+-+ |.++|..||-+.+-++.+|-.+...+. ..+..+||..+.+ .+.|+ +|.-.+-..+|.++
T Consensus 47 ~pl~~~l~~~~~--L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl 124 (1266)
T KOG1525|consen 47 LPLADHLIKDFL--LKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETL 124 (1266)
T ss_pred HHHHHHHhhHHH--hcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHH
Confidence 344455553332 468899999998889999988876542 1356666666654 24555 34445545555544
Q ss_pred HHHH-hhccccccHhhhHHHHHHHhcC----CCHHHH----HHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChh
Q 005727 100 VKDI-VTESDQFSIEEFIPLLRERMNV----LNPYVR----QFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHE 170 (680)
Q Consensus 100 lkdi-v~es~~f~L~~fIP~L~e~i~~----~np~vR----~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~d 170 (680)
.+-. +-.-...+-+.+++-++..+.+ ..|..- ..+...|..++.++ .++|+.+|.=+.-+.++
T Consensus 125 ~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d~v~--------~e~L~~ll~~lv~~~~~ 196 (1266)
T KOG1525|consen 125 AKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEEDTVQ--------SELLDVLLENLVKPGRD 196 (1266)
T ss_pred HHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch--------HHHHHHHHHHhccCCCC
Confidence 4311 1111111223345555544442 222211 22223333333333 24566666555556677
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCc
Q 005727 171 IRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKE 250 (680)
Q Consensus 171 VR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~ 250 (680)
.+.+|+.+-..++..+......++.+.+.--+..-.+.--.++...-+-|.++-.+.++. +-.++|-+..-|.-++
T Consensus 197 ~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~l----l~~vip~l~~eL~se~ 272 (1266)
T KOG1525|consen 197 TIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQL----LLAVIPQLEFELLSEQ 272 (1266)
T ss_pred ccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHH----HHHHHHHHHHHHhcch
Confidence 777777776667766654434444443332222111111111221222333333333322 2233444444445567
Q ss_pred hhHHHHHHHHHHHHHHhccCCCCCCC--hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChh----------------
Q 005727 251 EKIRVVARETNEELRAIKADPADGFD--VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRT---------------- 312 (680)
Q Consensus 251 ~eIR~~A~~~n~~Ll~~v~~~~~~ld--l~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~---------------- 312 (680)
.+.|..|....+.+.. +++..+. ++.+...-..++.+...++|+++++-........|.
T Consensus 273 ~~~Rl~a~~lvg~~~~---~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~ 349 (1266)
T KOG1525|consen 273 EEVRLKAVKLVGRMFS---DKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDL 349 (1266)
T ss_pred HHHHHHHHHHHHHHHh---cchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcC
Confidence 8899999888875443 3222222 788999989999999999999999877665555444
Q ss_pred ---------------hHh----hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc------------cchHHHHHHHH
Q 005727 313 ---------------EVL----HFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD------------LQHFRQLVVFL 361 (680)
Q Consensus 313 ---------------~~~----~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~------------~~~F~~fm~~L 361 (680)
++. .+.+.++..+-..+.|....||..|+.-|+++.++ .+-|.-+-..|
T Consensus 350 D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~swIp~kL 429 (1266)
T KOG1525|consen 350 DEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPFSWIPDKL 429 (1266)
T ss_pred ChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccccccccchhH
Confidence 111 22233555666777899999999999999887631 24466667778
Q ss_pred HHhhcccchhHHhHHHHHHHHHHhhcCh
Q 005727 362 VHNFRVDNSLLEKRGALIIRRLCVLLDA 389 (680)
Q Consensus 362 L~lf~~d~~lLe~rg~~IIrqLc~~L~~ 389 (680)
|..+-.+. ++.| ..|.|-||.-+-|
T Consensus 430 L~~~y~~~--~~~r-~~vE~il~~~L~P 454 (1266)
T KOG1525|consen 430 LHLYYEND--LDDR-LLVERILAEYLVP 454 (1266)
T ss_pred HhhHhhcc--ccHH-HHHHHHHHHhhCC
Confidence 88775543 4556 6677778777655
No 103
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=96.78 E-value=0.7 Score=54.20 Aligned_cols=346 Identities=17% Similarity=0.194 Sum_probs=184.3
Q ss_pred hhccCCC----CHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhc-CCChhHHHHHHH-----------------
Q 005727 38 LNSFSDQ----DSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSA-DSDANVQSAAHL----------------- 95 (680)
Q Consensus 38 L~~l~D~----d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~a-D~d~~Vr~gA~~----------------- 95 (680)
...++++ -+-+|..+++.+..+.-- +-...||..|+.+...++ |+..+ |.+.
T Consensus 92 ~qvl~ne~~~~p~fi~Nk~aqvlttLf~~---eYp~~WnsfF~dlmsv~~~~s~~~---~~dfflkvllaIdsEiad~dv 165 (980)
T KOG2021|consen 92 FQVLGNEQTKLPDFIMNKIAQVLTTLFML---EYPDCWNSFFDDLMSVFQVDSAIS---GLDFFLKVLLAIDSEIADQDV 165 (980)
T ss_pred HHHhCcccCCCChHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHhcccchh---hHHHHHHHHHHhhhHhhhccc
Confidence 3445666 567888888776554311 112346666666544332 22110 1111
Q ss_pred --------HHHHHHHHhhccccccHhhhHHHHHHHh----cCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHh
Q 005727 96 --------LDRLVKDIVTESDQFSIEEFIPLLRERM----NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNM 163 (680)
Q Consensus 96 --------Ldrllkdiv~es~~f~L~~fIP~L~e~i----~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~l 163 (680)
-+.++||-..+.+ ++.++..--+.+ +..||.+--.++.+++.+.+--++.++. =+-|++-|++.
T Consensus 166 ~rT~eei~knnliKDaMR~nd---ip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIa-Nd~f~nLLy~f 241 (980)
T KOG2021|consen 166 IRTKEEILKNNLIKDAMRDND---IPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIA-NDYFLNLLYKF 241 (980)
T ss_pred cCChHHHHHHhhHHHHHHhhh---HHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhh-chhHHHHHHHH
Confidence 2335565555443 233333222222 1458988888888888888888877776 45566777777
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhhcCC--------------------------CCC------------------------
Q 005727 164 LSDSSHEIRQQADSALWEFLQEIKNSP--------------------------SVD------------------------ 193 (680)
Q Consensus 164 LsD~~~dVR~~a~~~L~~fL~ei~~~~--------------------------~~d------------------------ 193 (680)
++ .+++|.+||.|+-+.+..= -+| ++|
T Consensus 242 l~--ieelR~aac~cilaiVsKk-MkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~ln 318 (980)
T KOG2021|consen 242 LN--IEELRIAACNCILAIVSKK-MKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLN 318 (980)
T ss_pred Hh--HHHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhh
Confidence 76 7899999999965544210 000 011
Q ss_pred --------------hHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHHhc-----CcccccchHhHHHHHhhhhcCCc---
Q 005727 194 --------------YGRMAEILVQRAASPDEFTRLTAIT-WINEFVKLG-----GDQLVPYYADILGAILPCISDKE--- 250 (680)
Q Consensus 194 --------------~~~II~iLl~~~~s~d~~irl~Al~-WL~e~~~l~-----~~~l~pfLp~LLp~LL~~Lsds~--- 250 (680)
+-++++++++.+.+.+.++-..... |.+-+..+- .+....++.+++-++.+.|.|.+
T Consensus 319 seld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~ls~~qk~~l~~illai~kqicydemy~ 398 (980)
T KOG2021|consen 319 SELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYF 398 (980)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhcccccchhhccHHHHHHHHHHHHhccHHhh
Confidence 2335556665555544443332222 333322221 22334567777778887776531
Q ss_pred --h-----hHHHHH---HHHHHHHHHhccCCCCCCChHhHHHH----HHHhc---CCCcHHHHHHHHHHHHHHHhhChhh
Q 005727 251 --E-----KIRVVA---RETNEELRAIKADPADGFDVGPILSI----ATRQL---SSEWEATRIEALHWISTLLNRHRTE 313 (680)
Q Consensus 251 --~-----eIR~~A---~~~n~~Ll~~v~~~~~~ldl~~iL~v----L~~~L---~~~~~~tR~aaL~WL~~L~~~~p~~ 313 (680)
+ |-.... ++-...+++.+.. +|-+-+++. +...+ ..++|+.-+.|+.-+..++|..+..
T Consensus 399 nddn~tg~EeEa~f~e~RkkLk~fqdti~~----idpsl~l~~Ir~slS~al~ns~e~swqevE~Aiylly~lgE~l~~~ 474 (980)
T KOG2021|consen 399 NDDNVTGDEEEAFFEEVRKKLKNFQDTIVV----IDPSLFLNNIRQSLSAALMNSKEESWQEVELAIYLLYNLGECLKNN 474 (980)
T ss_pred cccCCCCchHHHHHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhccccc
Confidence 1 111111 1112222233221 222222333 33333 3567889999999999999997764
Q ss_pred Hhhh----------hHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHh----hccchHHHHHHHHHHhh--cccchhHHhH
Q 005727 314 VLHF----------LNDIFDTLLKA--LSDPSDEVVLLVLEVHACIA----KDLQHFRQLVVFLVHNF--RVDNSLLEKR 375 (680)
Q Consensus 314 ~~~~----------l~~l~p~LL~~--LsD~s~eV~~~al~lLa~Is----~~~~~F~~fm~~LL~lf--~~d~~lLe~r 375 (680)
-..+ +..+.+.++.+ ++.+.+.|-..=++++-||. .+.++...++...+... ++.+.....|
T Consensus 475 ~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~kff~~esq~ip~vL~aFld~rglhn~ne~Vr~R 554 (980)
T KOG2021|consen 475 YFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYNKFFSTESQKIPLVLNAFLDSRGLHNKNENVRLR 554 (980)
T ss_pred cccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHccchhccccccccchH
Confidence 3322 33455556544 45566666666667777765 24455555555555433 2223334567
Q ss_pred HHHHHHHHHhhcCh------hhHHHHHHHhh
Q 005727 376 GALIIRRLCVLLDA------ERVYRELSTIL 400 (680)
Q Consensus 376 g~~IIrqLc~~L~~------e~Iy~~La~iL 400 (680)
+-+.+-+.-++++. |.|-..+.+.|
T Consensus 555 awYLF~RfVKlLkkqlvpfie~iln~iqdlL 585 (980)
T KOG2021|consen 555 AWYLFTRFVKLLKKQLVPFIEEILNKIQDLL 585 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666666654 56666666666
No 104
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.77 E-value=0.76 Score=52.61 Aligned_cols=184 Identities=18% Similarity=0.179 Sum_probs=114.2
Q ss_pred HHHHHHHHhhhhhhhhh--------hhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHh
Q 005727 10 EIIVEQFLLYADLFFYS--------ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKL 81 (680)
Q Consensus 10 ~~~~~~~~~~~~~~~~~--------~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL 81 (680)
++|+.+.+.|.+.+++- ..+...++..++++...+|..|||-.|..+..+..+.+.---.-+|-+...|.+-
T Consensus 61 ~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R 140 (885)
T COG5218 61 PSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSER 140 (885)
T ss_pred CCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 35677777777766651 3456667788899999999999999999988887766652223467888888888
Q ss_pred hcCCChhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHh-cCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHH
Q 005727 82 SADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERM-NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDG 159 (680)
Q Consensus 82 ~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i-~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~ 159 (680)
+=|.++.||-.| ..|.++-++-..+. .+ ....|..-+ ++++..||..++.-|.+=.+. +|.
T Consensus 141 ~~DRE~~VR~eAv~~L~~~Qe~~~nee-n~----~~n~l~~~vqnDPS~EVRr~allni~vdnsT------------~p~ 203 (885)
T COG5218 141 LFDREKAVRREAVKVLCYYQEMELNEE-NR----IVNLLKDIVQNDPSDEVRRLALLNISVDNST------------YPC 203 (885)
T ss_pred HhcchHHHHHHHHHHHHHHHhccCChH-HH----HHHHHHHHHhcCcHHHHHHHHHHHeeeCCCc------------chh
Confidence 889999999988 66666644322221 11 222222222 578889999887766532221 233
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHH
Q 005727 160 LFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTR 213 (680)
Q Consensus 160 Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~ir 213 (680)
+..-.-|.+...|+.+ -.+.+..|+.....++++=|-+|-..+.+.+..++
T Consensus 204 IlERarDv~~anRr~v---Y~r~Lp~iGd~~~lsi~kri~l~ewgl~dRe~sv~ 254 (885)
T COG5218 204 ILERARDVSGANRRMV---YERCLPRIGDLKSLSIDKRILLMEWGLLDREFSVK 254 (885)
T ss_pred HHHHhhhhhHHHHHHH---HHHHhhhhcchhhccccceehhhhhcchhhhhhHH
Confidence 4446677777777764 23344444433333343333333334444444444
No 105
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=96.74 E-value=0.23 Score=53.45 Aligned_cols=186 Identities=17% Similarity=0.159 Sum_probs=129.9
Q ss_pred hhHHHHHHHhcCCCH-HHHHHHHHHHHHh-hcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCC
Q 005727 114 EFIPLLRERMNVLNP-YVRQFLVGWITVL-DSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS 191 (680)
Q Consensus 114 ~fIP~L~e~i~~~np-~vR~~avswI~~L-~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~ 191 (680)
.+-..|..|++-.=| .|=+-+++.-..+ ..+.+..+...++-+.+|||.+++-.+-.||-.--+..+.+
T Consensus 54 ~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~--------- 124 (307)
T PF04118_consen 54 QVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKY--------- 124 (307)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---------
Confidence 355667777764433 6778888888755 45666779999999999999999888888886532221111
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCC
Q 005727 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADP 271 (680)
Q Consensus 192 ~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~ 271 (680)
++.+++ .+.|.++.++.+++|.+.|+..|.-+.+.+..+.+...+++.
T Consensus 125 -------------------------------~lpL~~-~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~ 172 (307)
T PF04118_consen 125 -------------------------------YLPLGP-ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK 172 (307)
T ss_pred -------------------------------hcCccH-HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh
Confidence 234555 889999999999999999998888888777777776666542
Q ss_pred CCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh-----------hhH-hhhhHHHHHHHHHhcCCCCHHHHHH
Q 005727 272 ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR-----------TEV-LHFLNDIFDTLLKALSDPSDEVVLL 339 (680)
Q Consensus 272 ~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p-----------~~~-~~~l~~l~p~LL~~LsD~s~eV~~~ 339 (680)
.-+..+...+. .+...|..|+.|+..-..+.. ..+ .+--.-++.++..+|.|++-.|++.
T Consensus 173 ---~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~ 244 (307)
T PF04118_consen 173 ---YFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRG 244 (307)
T ss_pred ---HHHHHHHHHHh-----cCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHH
Confidence 11233333332 345689999999885544433 122 2333346779999999999999999
Q ss_pred HHHHHHHHh
Q 005727 340 VLEVHACIA 348 (680)
Q Consensus 340 al~lLa~Is 348 (680)
++.+|-.-.
T Consensus 245 ~LDlLl~~~ 253 (307)
T PF04118_consen 245 FLDLLLSHF 253 (307)
T ss_pred HHHHHHHhC
Confidence 998776544
No 106
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.73 E-value=0.042 Score=53.76 Aligned_cols=134 Identities=14% Similarity=0.196 Sum_probs=112.7
Q ss_pred cHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhhhhchHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHHHhhc
Q 005727 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-IDMLGFLPDFLDGLFNMLSDSS-HEIRQQADSALWEFLQEIKN 188 (680)
Q Consensus 111 ~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~-~~Li~~Lp~~L~~Lf~lLsD~~-~dVR~~a~~~L~~fL~ei~~ 188 (680)
.+.+++-.+...+++.+++.|-..+..+.......+ .-+..+-..++.+|.+.+..++ +.+++.++.+|..+...+..
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~ 101 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRG 101 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 466678888888899999999999999999888764 4556899999999999998864 56889999999999988876
Q ss_pred CCC-------CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhh
Q 005727 189 SPS-------VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCI 246 (680)
Q Consensus 189 ~~~-------~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~L 246 (680)
.+. +.++.+++.++.-.++ +.....++.-+..++...|..+.||-.++=..+++.+
T Consensus 102 ~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 102 KPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred CCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 653 3578899998887775 5567789999999999999999999999988887765
No 107
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.71 E-value=0.21 Score=55.99 Aligned_cols=266 Identities=16% Similarity=0.116 Sum_probs=160.9
Q ss_pred hhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhh-cCCChhHHHHH-HHHHHHHHHHhh
Q 005727 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLS-ADSDANVQSAA-HLLDRLVKDIVT 105 (680)
Q Consensus 28 ~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~-aD~d~~Vr~gA-~~Ldrllkdiv~ 105 (680)
.-+..++.....-..||+..+|.-||-.|.|.+..+......|-..+++++...+ .|.+.+|.--| .+|.++..-+..
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~ 333 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN 333 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh
Confidence 3455666667778899999999999999999988777777788889999988665 44456777666 556555443332
Q ss_pred cc-ccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhc-hHHHHHH---HHHhcCCCChhHHHHHHHHHH
Q 005727 106 ES-DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF-LPDFLDG---LFNMLSDSSHEIRQQADSALW 180 (680)
Q Consensus 106 es-~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~-Lp~~L~~---Lf~lLsD~~~dVR~~a~~~L~ 180 (680)
.. ..+ +-.+.-.++..+.+.++++|..+....+.|....+..--.+ .....++ +.--++|++|-|-.++...+.
T Consensus 334 ~~l~~~-~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~ 412 (533)
T KOG2032|consen 334 DDLESY-LLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELR 412 (533)
T ss_pred cchhhh-chhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHH
Confidence 11 111 12233445666679999999999999998887766443322 2233333 334568899988877644432
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhh----cCCchhHHH
Q 005727 181 EFLQEIKNSPSVDYGRMAEILVQRAASPDE-FTRLTAITWINEFVKLGGDQLVPYYADILGAILPCI----SDKEEKIRV 255 (680)
Q Consensus 181 ~fL~ei~~~~~~d~~~II~iLl~~~~s~d~-~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~L----sds~~eIR~ 255 (680)
... |....+..-.+.-... +.+- ..+..--.|-. .+-++.|+++-.++... .-+-+.+|.
T Consensus 413 ~c~------p~l~rke~~~~~q~~l-d~~~~~~q~Fyn~~c~--------~L~~i~~d~l~~~~t~~~~~f~sswe~vr~ 477 (533)
T KOG2032|consen 413 TCY------PNLVRKELYHLFQESL-DTDMARFQAFYNQWCI--------QLNHIHPDILMLLLTEDQHIFSSSWEQVRE 477 (533)
T ss_pred hcC------chhHHHHHHHHHhhhh-HHhHHHHHHHHHHHHH--------HHhhhCHHHHHHHHHhchhheecchHHHHH
Confidence 211 1111111111111111 1111 11111112322 34556677766555533 334578888
Q ss_pred HHHHHHHHHHHhc-cCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Q 005727 256 VARETNEELRAIK-ADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR 309 (680)
Q Consensus 256 ~A~~~n~~Ll~~v-~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~ 309 (680)
.|..-.+.+.... .+.-+..|...+...+....+++-.+++-+|...+..+..+
T Consensus 478 aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~~ 532 (533)
T KOG2032|consen 478 AAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSVK 532 (533)
T ss_pred HHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhhc
Confidence 8866544333222 21123456678888899999999999999999888877654
No 108
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.71 E-value=0.5 Score=54.56 Aligned_cols=149 Identities=17% Similarity=0.166 Sum_probs=94.9
Q ss_pred CChhHHHHHHHHHHHHHHHhhcCCCCCh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhh
Q 005727 167 SSHEIRQQADSALWEFLQEIKNSPSVDY-GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPC 245 (680)
Q Consensus 167 ~~~dVR~~a~~~L~~fL~ei~~~~~~d~-~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~ 245 (680)
.+..+++.|++.+..|-+.+ +++ +.-++.++.-|.+.|..||..|+.-|-.++.-.+ .|++++..+|...
T Consensus 34 g~~k~K~Laaq~I~kffk~F-----P~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~----~~v~kvaDvL~Ql 104 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHF-----PDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP----EHVSKVADVLVQL 104 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC------GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhC-----hhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH----HHHhHHHHHHHHH
Confidence 46889999988888887644 233 5678899999999999999999887776665444 3689999999999
Q ss_pred hcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcC---CCcHHHHHHHHHHHHHHHhhChhhHhh---hhH
Q 005727 246 ISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS---SEWEATRIEALHWISTLLNRHRTEVLH---FLN 319 (680)
Q Consensus 246 Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~---~~~~~tR~aaL~WL~~L~~~~p~~~~~---~l~ 319 (680)
|..+++.-..+..++.-++++. |-...+..+..++. ++.+.+|+.++..|..=....+.++.. -.+
T Consensus 105 L~tdd~~E~~~v~~sL~~ll~~--------d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e 176 (556)
T PF05918_consen 105 LQTDDPVELDAVKNSLMSLLKQ--------DPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEME 176 (556)
T ss_dssp TT---HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHH
T ss_pred HhcccHHHHHHHHHHHHHHHhc--------CcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHH
Confidence 9977777777777766665554 23456666666664 456779999999887555444444333 122
Q ss_pred H-HHHHHHHhcCCC
Q 005727 320 D-IFDTLLKALSDP 332 (680)
Q Consensus 320 ~-l~p~LL~~LsD~ 332 (680)
. ++..+.+.|.|-
T Consensus 177 ~~i~~~ikkvL~DV 190 (556)
T PF05918_consen 177 EFIVDEIKKVLQDV 190 (556)
T ss_dssp HHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHhc
Confidence 2 333444666663
No 109
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=96.69 E-value=0.029 Score=59.62 Aligned_cols=145 Identities=21% Similarity=0.243 Sum_probs=105.9
Q ss_pred hhhhhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccch---h---hhHHHHHHHHHHhhc--------CCChhH
Q 005727 24 FYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF---I---IFFNQIFDALCKLSA--------DSDANV 89 (680)
Q Consensus 24 ~~~~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~i---l---~~f~eIfd~L~kL~a--------D~d~~V 89 (680)
..++++.+-++|++|.-++|.++.+|..+|..+..+.+.+.... + ..+..+.++|.+++. |....+
T Consensus 111 ~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~L 190 (282)
T PF10521_consen 111 PWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLEL 190 (282)
T ss_pred chHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHH
Confidence 35588999999999999999999999999999999876554433 2 446777888887765 555566
Q ss_pred HHHH-HHHHHHHHHHhhccccccHhhhHHHHHH----Hhc-CC---CHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHH
Q 005727 90 QSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRE----RMN-VL---NPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGL 160 (680)
Q Consensus 90 r~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e----~i~-~~---np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~L 160 (680)
=..| .+|-.+++-.-.+.+..-...+...+.+ .+. .. .+.+|.++++-+..+.+.-+.....|+..+++.|
T Consensus 191 l~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l 270 (282)
T PF10521_consen 191 LQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVL 270 (282)
T ss_pred HHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666 6666766633222211112223333333 332 23 4899999999999999989999999999999999
Q ss_pred HHhcCCCC
Q 005727 161 FNMLSDSS 168 (680)
Q Consensus 161 f~lLsD~~ 168 (680)
.+.+.||.
T Consensus 271 ~~~l~npf 278 (282)
T PF10521_consen 271 SQILENPF 278 (282)
T ss_pred HHHhcCCC
Confidence 99999875
No 110
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.61 E-value=0.25 Score=53.24 Aligned_cols=208 Identities=15% Similarity=0.091 Sum_probs=131.2
Q ss_pred HhhcCCChhHHHHH-HHHHHHHHHHhh-ccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--CchhhhhchHH
Q 005727 80 KLSADSDANVQSAA-HLLDRLVKDIVT-ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSV--PDIDMLGFLPD 155 (680)
Q Consensus 80 kL~aD~d~~Vr~gA-~~Ldrllkdiv~-es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~si--p~~~Li~~Lp~ 155 (680)
..+.|.....|.+| ..+-+++..-+. +--.-....+++.+...+...++.=+..+...+..+.-. ++.+--..+..
T Consensus 50 d~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~ 129 (309)
T PF05004_consen 50 DLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEE 129 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Confidence 34566678888888 444443332111 100112345788888888777777777888888877554 34556678889
Q ss_pred HHHHHHHhcCCCC--hhHHHHHHHHHHHHHHHhhcCCCCChH---HHHHH--HHHhcCC----------CCHHHHHHHHH
Q 005727 156 FLDGLFNMLSDSS--HEIRQQADSALWEFLQEIKNSPSVDYG---RMAEI--LVQRAAS----------PDEFTRLTAIT 218 (680)
Q Consensus 156 ~L~~Lf~lLsD~~--~dVR~~a~~~L~~fL~ei~~~~~~d~~---~II~i--Ll~~~~s----------~d~~irl~Al~ 218 (680)
+.+.|.+.+.|.+ ..+|.+++.||+...-..... .-++. +.++. .....+. +++.+...|+.
T Consensus 130 ~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d-~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~ 208 (309)
T PF05004_consen 130 LKPVLKRILTDSSASPKARAACLEALAICTFVGGSD-EEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALS 208 (309)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHH
Confidence 9999999999965 467788888888654322211 12344 34442 2222211 13567778888
Q ss_pred HHHHHHHhc-CcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCC---CChHhHHHHHHHhc
Q 005727 219 WINEFVKLG-GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADG---FDVGPILSIATRQL 288 (680)
Q Consensus 219 WL~e~~~l~-~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~---ldl~~iL~vL~~~L 288 (680)
-++-++... +..+..++...+|.+...|..++.++|-+|.++..-+.+...+..+. -+.+.++..+.+.-
T Consensus 209 aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La 282 (309)
T PF05004_consen 209 AWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELA 282 (309)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHH
Confidence 445555544 44566778889999999999999999999999988777766543222 24455555555444
No 111
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.57 E-value=0.052 Score=56.88 Aligned_cols=176 Identities=19% Similarity=0.235 Sum_probs=114.7
Q ss_pred hHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc--cchhhhHHHHHHHHHHhhcC-CChhHHHHH-HHHHHHHHHHhhccc
Q 005727 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVVR--GDFIIFFNQIFDALCKLSAD-SDANVQSAA-HLLDRLVKDIVTESD 108 (680)
Q Consensus 33 Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~--~~il~~f~eIfd~L~kL~aD-~d~~Vr~gA-~~Ldrllkdiv~es~ 108 (680)
.++.|..-+.|+++.||..|..++.|++-... +.+..|++++.... .++ -+..++-+| .+|..+ -++...
T Consensus 55 gi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~---~s~~lns~~Q~agLrlL~nL---tv~~~~ 128 (254)
T PF04826_consen 55 GISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEET---VSSPLNSEVQLAGLRLLTNL---TVTNDY 128 (254)
T ss_pred CHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHH---hcCCCCCHHHHHHHHHHHcc---CCCcch
Confidence 56888999999999999999999999854332 22334444443332 333 367787777 555554 233322
Q ss_pred cccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc--hhhhhchHHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHH
Q 005727 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD--IDMLGFLPDFLDGLFNMLSD-SSHEIRQQADSALWEFLQE 185 (680)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~--~~Li~~Lp~~L~~Lf~lLsD-~~~dVR~~a~~~L~~fL~e 185 (680)
..-+...+|.+...+...+..+|..++..+.+|..-|. .+++.. .-+..+..++.. .++++-..+-.....+.+.
T Consensus 129 ~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~--q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 129 HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSA--QVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhc--cchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 33356678888888888999999999999999988776 333321 234444445544 4677766666666666666
Q ss_pred hhcCCC------C----------ChHHHHHHHHHhcCCCCHHHHHHH
Q 005727 186 IKNSPS------V----------DYGRMAEILVQRAASPDEFTRLTA 216 (680)
Q Consensus 186 i~~~~~------~----------d~~~II~iLl~~~~s~d~~irl~A 216 (680)
++.... . +...+.+-|..-..++|++||..+
T Consensus 207 ~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 207 IKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQV 253 (254)
T ss_pred hCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence 655421 1 234566777777788999988653
No 112
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.31 Score=57.23 Aligned_cols=255 Identities=13% Similarity=0.122 Sum_probs=135.8
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC-
Q 005727 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP- 190 (680)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~- 190 (680)
...+.|.+-.++.++..-+-.-+-..+..+....+.++.+ -...|--+++-+..-.|-+|...|++.....+..+
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~ 318 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT 318 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc
Confidence 3446666666666666666666666666666666665655 23334445555777889888888888876555432
Q ss_pred --CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCc-----hhHHHHHHHHH--
Q 005727 191 --SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKE-----EKIRVVARETN-- 261 (680)
Q Consensus 191 --~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~-----~eIR~~A~~~n-- 261 (680)
..|++++|. +.+..+...|+ ..+.+.+.+.=+.-+-+-++....-++|+. ..||..+.+.-
T Consensus 319 ~cN~elE~lIt-------d~NrsIat~AI---TtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k 388 (865)
T KOG1078|consen 319 VCNLDLESLIT-------DSNRSIATLAI---TTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRK 388 (865)
T ss_pred ccchhHHhhhc-------ccccchhHHHH---HHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHH
Confidence 235555542 22222222222 222333333333334444455555555543 22333322110
Q ss_pred -----HHHHHhccCCCCCCCh-HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh-----------------hChhhHhhhh
Q 005727 262 -----EELRAIKADPADGFDV-GPILSIATRQLSSEWEATRIEALHWISTLLN-----------------RHRTEVLHFL 318 (680)
Q Consensus 262 -----~~Ll~~v~~~~~~ldl-~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~-----------------~~p~~~~~~l 318 (680)
.-+-++..+ ..+++| .++++++..+... +...|+.++.-|.++.+ -+|....|.
T Consensus 389 ~~~~m~FL~~~Lr~-eGg~e~K~aivd~Ii~iie~-~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Ps- 465 (865)
T KOG1078|consen 389 HTVMMNFLSNMLRE-EGGFEFKRAIVDAIIDIIEE-NPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPS- 465 (865)
T ss_pred HHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcc-
Confidence 011122222 122333 3444444444431 23344555544444444 444433331
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhccc-chhHHhHHHHHHHHHH
Q 005727 319 NDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVD-NSLLEKRGALIIRRLC 384 (680)
Q Consensus 319 ~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~~~~F~~fm~~LL~lf~~d-~~lLe~rg~~IIrqLc 384 (680)
.++-.+....-=++..||..+..+|++++.+.+...+=+..+++++..| .....+|+.+..+.+-
T Consensus 466 -kyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 466 -KYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred -hhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 2333444444446777888999999999977777777778888877655 4455678888877766
No 113
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.52 E-value=0.27 Score=52.96 Aligned_cols=187 Identities=15% Similarity=0.155 Sum_probs=122.3
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCC-----ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHhc-Cc
Q 005727 157 LDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV-----DYGRMAEILVQRAASPDEFTRLTAITWINEF-VKLG-GD 229 (680)
Q Consensus 157 L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~-----d~~~II~iLl~~~~s~d~~irl~Al~WL~e~-~~l~-~~ 229 (680)
|...+..+.|.+...|.++- ..+.+.+...... ....+++.+...++.+..+-+..|+..+.-+ ++++ |.
T Consensus 45 L~~~Id~l~eK~~~~Re~aL---~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~ 121 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAAL---EALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGE 121 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHH---HHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCc
Confidence 44444566778888898774 4444444443322 2456778888888776654455566666555 4554 45
Q ss_pred ccccchHhHHHHHhhhhcCCc--hhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHH-----hcCC----------Cc
Q 005727 230 QLVPYYADILGAILPCISDKE--EKIRVVARETNEELRAIKADPADGFDVGPILSIATR-----QLSS----------EW 292 (680)
Q Consensus 230 ~l~pfLp~LLp~LL~~Lsds~--~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~-----~L~~----------~~ 292 (680)
.--..+..+.|.+.+.+.|.. ..+|..+..+.+-..=+... +.-++..+++.+.. .... +.
T Consensus 122 ~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~--d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~ 199 (309)
T PF05004_consen 122 DSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGS--DEEETEELMESLESIFLLSILKSDGNAPVVAAEDD 199 (309)
T ss_pred cHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcC--ChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCc
Confidence 555677888888888888764 46777776676533222221 22234433344331 2221 12
Q ss_pred HHHHHHHHHHHHHHHhhChh-hHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005727 293 EATRIEALHWISTLLNRHRT-EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 293 ~~tR~aaL~WL~~L~~~~p~-~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is 348 (680)
....-+||.-++.|+...|. .+..+++..+|.|...|..++.+||..|-+.++-+.
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 45789999888888888777 466778999999999999999999999999999876
No 114
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.49 E-value=1 Score=53.75 Aligned_cols=131 Identities=20% Similarity=0.284 Sum_probs=81.8
Q ss_pred hhhHHHHhhccCCCCHHHHHHHHHHHHHHH--HhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHH-----H
Q 005727 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIA--KVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVK-----D 102 (680)
Q Consensus 31 ~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~--kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllk-----d 102 (680)
..+++.+.+++...+..+.-.+...|.+++ +..+..+. -..+++.|.+++...+....+.| .+|-++.- .
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~--~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~ 366 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMA--ESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS 366 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH--HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 458899999999889888888777776654 11222222 23578889999988887788877 66654322 2
Q ss_pred HhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhhhhchHHHHHHHHHhcCC-CChhHH
Q 005727 103 IVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-IDMLGFLPDFLDGLFNMLSD-SSHEIR 172 (680)
Q Consensus 103 iv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~-~~Li~~Lp~~L~~Lf~lLsD-~~~dVR 172 (680)
.+...| ++|.|...+.+ +..|..++..++++....+ ..+..|=+ -++.+.+++.. ++++|.
T Consensus 367 ~mV~~G------lIPkLv~LL~d--~~~~~val~iLy~LS~dd~~r~~f~~Td-cIp~L~~~Ll~~~~~~v~ 429 (708)
T PF05804_consen 367 QMVSLG------LIPKLVELLKD--PNFREVALKILYNLSMDDEARSMFAYTD-CIPQLMQMLLENSEEEVQ 429 (708)
T ss_pred HHHHCC------CcHHHHHHhCC--CchHHHHHHHHHHhccCHhhHHHHhhcc-hHHHHHHHHHhCCCcccc
Confidence 222334 67888888764 5577888888888865432 22333332 34444444433 444444
No 115
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.93 Score=53.55 Aligned_cols=271 Identities=15% Similarity=0.160 Sum_probs=155.2
Q ss_pred HHHHHHHHHhhcCC-ChhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHhc--------CCCHHHHHHHHHHHHHh
Q 005727 72 NQIFDALCKLSADS-DANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMN--------VLNPYVRQFLVGWITVL 141 (680)
Q Consensus 72 ~eIfd~L~kL~aD~-d~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~--------~~np~vR~~avswI~~L 141 (680)
+-+..+.+++..|. |.-||-+| ..+.-.++| -.|+-+.|.|.+-..+. ...-.+|..+++.++.+
T Consensus 525 ~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD-----~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~l 599 (978)
T KOG1993|consen 525 PLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDD-----WNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTL 599 (978)
T ss_pred HHHHHHHHHhcCccccceeehHHHHHHHHhhhh-----ccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 56788888999998 78888777 444333333 23556666666533322 44568899999999987
Q ss_pred hcCCchhhhhchHHHHHHHHHhcCC---CChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHH-H--HHH
Q 005727 142 DSVPDIDMLGFLPDFLDGLFNMLSD---SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEF-T--RLT 215 (680)
Q Consensus 142 ~sip~~~Li~~Lp~~L~~Lf~lLsD---~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~-i--rl~ 215 (680)
....+..+.+|.-.++..|- .+.+ ..+-.|-+.-..|..|+..++..+..-++-+.|++--.+.-+.|+ + -.-
T Consensus 600 I~r~~e~I~P~~~~ivq~lp-~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L~ED 678 (978)
T KOG1993|consen 600 IERVSEHIAPYASTIVQYLP-LLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYLLED 678 (978)
T ss_pred HHHHHHhhhHHHHHHHHHHH-HHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeehhhh
Confidence 76555444455555555433 2333 344567777788899999998765555565666665555433322 1 122
Q ss_pred HHH-HHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCCh-HhHHHHHHHhcCCCcH
Q 005727 216 AIT-WINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV-GPILSIATRQLSSEWE 293 (680)
Q Consensus 216 Al~-WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl-~~iL~vL~~~L~~~~~ 293 (680)
+++ |...+... ..+.|-+-.+.|-+++.+.-+.+..+-+-.-.++. .++.++..--++ ..+.+.+...+.+-..
T Consensus 679 gmeLW~~~L~n~--~~l~p~ll~L~p~l~~~iE~ste~L~t~l~Ii~sY--ilLd~~~fl~~y~~~i~k~~~~~l~dvr~ 754 (978)
T KOG1993|consen 679 GMELWLTTLMNS--QKLTPELLLLFPHLLYIIEQSTENLPTVLMIISSY--ILLDNTVFLNDYAFGIFKKLNDLLDDVRN 754 (978)
T ss_pred HHHHHHHHHhcc--cccCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH--HhhccHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 444 77655433 33445555566666666665554444332222221 111111100112 4566677777766555
Q ss_pred HHHHHHHHHHHHHHhhChhhHhh--hhHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHh-hccchH
Q 005727 294 ATRIEALHWISTLLNRHRTEVLH--FLNDIFDTLLK--ALSDPSDEVVLLVLEVHACIA-KDLQHF 354 (680)
Q Consensus 294 ~tR~aaL~WL~~L~~~~p~~~~~--~l~~l~p~LL~--~LsD~s~eV~~~al~lLa~Is-~~~~~F 354 (680)
+.-.+.++.+-.+.+..| +.. +...++|.+.. +.+|+.|-|-..-+.+.+||+ .|...|
T Consensus 755 egl~avLkiveili~t~~--il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~ 818 (978)
T KOG1993|consen 755 EGLQAVLKIVEILIKTNP--ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLF 818 (978)
T ss_pred HHHHHHHHHHHHHHhhhH--HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHH
Confidence 555566665555555554 222 34445554444 457888988888889999998 333333
No 116
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=96.48 E-value=0.14 Score=50.13 Aligned_cols=139 Identities=19% Similarity=0.211 Sum_probs=93.7
Q ss_pred hhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchh-hhHHHHHHHHHHhhcCCCh-hHHHHH-HHHHHHHHHH
Q 005727 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFI-IFFNQIFDALCKLSADSDA-NVQSAA-HLLDRLVKDI 103 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il-~~f~eIfd~L~kL~aD~d~-~Vr~gA-~~Ldrllkdi 103 (680)
+.-++..+..+..-++++++.-|..++.-+..++..+..+++ .+-..-+..|.+.+.++|+ .++++| ..|.+++
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~--- 96 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLF--- 96 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH---
Confidence 667888999999999999999999998888777777655554 4445556666666665554 666666 4444443
Q ss_pred hhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 005727 104 VTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (680)
Q Consensus 104 v~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL 183 (680)
.+++.....+|+.+ .+++|.|++.+++++.| ..+...+..+|..++
T Consensus 97 -----------------~~~~~~p~l~Rei~---------------tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 97 -----------------DLIRGKPTLTREIA---------------TPNLPKFIQSLLQLLQD--SSCPETALDALATLL 142 (165)
T ss_pred -----------------HHhcCCCchHHHHh---------------hccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 33333344455533 67899999999999987 666677777777777
Q ss_pred HHhhcCCCCChHHHHHHHH
Q 005727 184 QEIKNSPSVDYGRMAEILV 202 (680)
Q Consensus 184 ~ei~~~~~~d~~~II~iLl 202 (680)
..-.....+...++-..++
T Consensus 143 ~~~ptt~rp~~~ki~~~l~ 161 (165)
T PF08167_consen 143 PHHPTTFRPFANKIESALL 161 (165)
T ss_pred HHCCccccchHHHHHHHHH
Confidence 6544433444444444443
No 117
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.35 Score=57.11 Aligned_cols=274 Identities=16% Similarity=0.203 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHhhccchhhhHHHHHHHHH-HhhcCCChhH--HHHH-HHHHHH-HHHHhhcc-----------ccccH
Q 005727 49 RYYACEALYNIAKVVRGDFIIFFNQIFDALC-KLSADSDANV--QSAA-HLLDRL-VKDIVTES-----------DQFSI 112 (680)
Q Consensus 49 R~~A~eaL~nI~kv~~~~il~~f~eIfd~L~-kL~aD~d~~V--r~gA-~~Ldrl-lkdiv~es-----------~~f~L 112 (680)
|.+||+-+..+.+...+.+...|......+. +..+||..+- |..| .+..++ +|.-.+.. .+|-.
T Consensus 379 RR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~ 458 (960)
T KOG1992|consen 379 RRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFA 458 (960)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHH
Confidence 6678888888888777766666666666655 4567776543 3444 222222 11111111 13445
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCC
Q 005727 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS 191 (680)
Q Consensus 113 ~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~-~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~ 191 (680)
..++|-|...=..+.|-.|..++.-+..+-+..+ ..++.++|. +.+.+.-+++-|..-|+.++..++..-.+...
T Consensus 459 ~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~----li~~L~a~s~vvhsYAA~aiEkil~vre~~~~ 534 (960)
T KOG1992|consen 459 NQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPR----LIRFLEAESRVVHSYAAIAIEKLLTVRENSNA 534 (960)
T ss_pred HHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHH----HHHhccCcchHHHHHHHHHHHhccccccCccc
Confidence 5566666655456778899999999999887555 444555555 45577777889999999999988764433111
Q ss_pred -----CChHHHHHHHHHh----cCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCC-----chhHHHHH
Q 005727 192 -----VDYGRMAEILVQR----AASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDK-----EEKIRVVA 257 (680)
Q Consensus 192 -----~d~~~II~iLl~~----~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds-----~~eIR~~A 257 (680)
-++.+.+..++.+ ...++..--...+..|..++.+.++...|+.|.+++.+-..+... +|.-----
T Consensus 535 ~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYL 614 (960)
T KOG1992|consen 535 KIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYL 614 (960)
T ss_pred cccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHH
Confidence 1344444444443 334432222334555666777888888888888887665544321 11100000
Q ss_pred HHHHHHHHH-hccCCCCCC-Ch-HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHH
Q 005727 258 RETNEELRA-IKADPADGF-DV-GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLL 326 (680)
Q Consensus 258 ~~~n~~Ll~-~v~~~~~~l-dl-~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL 326 (680)
-++.+.+.+ ........+ .+ .+++|+....|..+-.+--=-+++.+..+.+.+...+-+....++|.|+
T Consensus 615 FEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lL 686 (960)
T KOG1992|consen 615 FESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLL 686 (960)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhc
Confidence 011111111 111111111 12 4566666666665555555567778888888877755555555666555
No 118
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.44 E-value=1.6 Score=51.11 Aligned_cols=206 Identities=16% Similarity=0.155 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHhhcCCc-hhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCC
Q 005727 129 YVRQFLVGWITVLDSVPD-IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAAS 207 (680)
Q Consensus 129 ~vR~~avswI~~L~sip~-~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s 207 (680)
++-.|+...+..+-..++ .| .+..++..|++-..-++..||.-++..|..+..+++..++.=+..+.+.|..++.+
T Consensus 61 RIl~fla~fv~sl~q~d~e~D---lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~D 137 (892)
T KOG2025|consen 61 RILSFLARFVESLPQLDKEED---LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKD 137 (892)
T ss_pred HHHHHHHHHHHhhhccCchhh---HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhc
Confidence 444555555555544333 33 45556666777777789999999999999998876654444489999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhc-CCchhHHHHHHHHH------------------HHHHHhc
Q 005727 208 PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS-DKEEKIRVVARETN------------------EELRAIK 268 (680)
Q Consensus 208 ~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Ls-ds~~eIR~~A~~~n------------------~~Ll~~v 268 (680)
.++.||..|+..+..+-...++.=.| +.-.+...+. |+.+|+|.+|.... +...+++
T Consensus 138 rep~VRiqAv~aLsrlQ~d~~dee~~----v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlv 213 (892)
T KOG2025|consen 138 REPNVRIQAVLALSRLQGDPKDEECP----VVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLV 213 (892)
T ss_pred cCchHHHHHHHHHHHHhcCCCCCccc----HHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHH
Confidence 99999999999998876554433222 2333333444 67788888765321 1111111
Q ss_pred cC----C--CCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCC-CHHHHHHHH
Q 005727 269 AD----P--ADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDP-SDEVVLLVL 341 (680)
Q Consensus 269 ~~----~--~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~-s~eV~~~al 341 (680)
-+ . --.++.+.-+-.+...+.+-...+|-|+-+.+ -.+-..+.++-++.+|..|.=+ +++|.-+++
T Consensus 214 Y~r~lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~i-------l~~Wl~~~dgni~ElL~~ldvsnss~vavk~l 286 (892)
T KOG2025|consen 214 YERCLPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAI-------LSGWLRFSDGNILELLERLDVSNSSEVAVKAL 286 (892)
T ss_pred HHHhhhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHH-------HHHHhhhccccHHHHHHHhccccchHHHHHHH
Confidence 00 0 00011222233344444443333333333211 1222345566677888888755 568888888
Q ss_pred HHHHHHh
Q 005727 342 EVHACIA 348 (680)
Q Consensus 342 ~lLa~Is 348 (680)
+.|-.++
T Consensus 287 ealf~~v 293 (892)
T KOG2025|consen 287 EALFSGV 293 (892)
T ss_pred HHHHHHH
Confidence 8776643
No 119
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.36 E-value=0.32 Score=54.28 Aligned_cols=188 Identities=16% Similarity=0.173 Sum_probs=131.8
Q ss_pred hchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC-CC---CChHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHH
Q 005727 151 GFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS-PS---VDYGRMAEILVQRAAS-PDEFTRLTAITWINEFVK 225 (680)
Q Consensus 151 ~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~-~~---~d~~~II~iLl~~~~s-~d~~irl~Al~WL~e~~~ 225 (680)
+..+-+.+-|-++=++...+-|+.| +.++.+.+... .. .++.+|+..+++-+.+ .++.++..|+.-|++++.
T Consensus 283 ~~~~~v~~~l~~~~g~e~a~~~k~a---lsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~ 359 (516)
T KOG2956|consen 283 DQSALVADLLKEISGSERASERKEA---LSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLT 359 (516)
T ss_pred chhHHHHHHHHhccCccchhHHHHH---HHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHH
Confidence 3344444444444444355566655 34343333221 12 2588999999999988 567789999999999999
Q ss_pred hcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHH
Q 005727 226 LGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWIST 305 (680)
Q Consensus 226 l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~ 305 (680)
-.+..|..+.--.+--+|.+-.|+++++-.+|.++.-.++... ..+..|. .+...+.+..++.-.++++-+-.
T Consensus 360 ~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~------~P~~~I~-~i~~~Ilt~D~~~~~~~iKm~Tk 432 (516)
T KOG2956|consen 360 NQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASH------LPLQCIV-NISPLILTADEPRAVAVIKMLTK 432 (516)
T ss_pred hchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhh------CchhHHH-HHhhHHhcCcchHHHHHHHHHHH
Confidence 9999999999888899999999998887777766544332222 1123333 33334444667788888888887
Q ss_pred HHhhCh-hhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005727 306 LLNRHR-TEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 306 L~~~~p-~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is 348 (680)
+.+..+ +++.+.++++.|.+++.-...+..||+.+.-.|-.+.
T Consensus 433 l~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 433 LFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 777755 5678999999999999999999999998887665544
No 120
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.2 Score=59.23 Aligned_cols=219 Identities=16% Similarity=0.112 Sum_probs=147.9
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 005727 122 RMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEIL 201 (680)
Q Consensus 122 ~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iL 201 (680)
.++++.+.+|-+++.-+..+..--+..=...--.+++....++.|.++=|--.|.+.+..++. ++=++|+|-+
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lce-------vy~e~il~dL 807 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCE-------VYPEDILPDL 807 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHH-------hcchhhHHHH
Confidence 345777788988888888776633333344556677888889999888777666665555553 3335566666
Q ss_pred HHhc----CCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCCh
Q 005727 202 VQRA----ASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV 277 (680)
Q Consensus 202 l~~~----~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl 277 (680)
.+.- ..+..+.++.+=+.|...++.-|+-+..|...++...++...+++.+-|..+....+.+++........ .+
T Consensus 808 ~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd-~~ 886 (982)
T KOG4653|consen 808 SEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD-FF 886 (982)
T ss_pred HHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH-HH
Confidence 5522 122123333333677777888888889999999999999999888888888888888887775432222 34
Q ss_pred HhHHH-HHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh----HHHHHHHHHhcCCCCHH-HHHHHHHHHHHHh
Q 005727 278 GPILS-IATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL----NDIFDTLLKALSDPSDE-VVLLVLEVHACIA 348 (680)
Q Consensus 278 ~~iL~-vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l----~~l~p~LL~~LsD~s~e-V~~~al~lLa~Is 348 (680)
.+++. ++...-.++...+|.||.+.+..+..+.+.++.|.+ -+..-.+.+-..+..++ ++..++..+.+|-
T Consensus 887 ~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~ 963 (982)
T KOG4653|consen 887 HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQ 963 (982)
T ss_pred HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 44444 344444577888999999999999999999999955 34445555555555544 4446666555443
No 121
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.57 Score=55.59 Aligned_cols=189 Identities=16% Similarity=0.177 Sum_probs=121.6
Q ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHHhcCcccccc--hHhHHHHHhhhhcCC-chhHHHHHHHHHHHHHHhccCCCC
Q 005727 198 AEILVQRAASP-DEFTRLTAITWINEFVKLGGDQLVPY--YADILGAILPCISDK-EEKIRVVARETNEELRAIKADPAD 273 (680)
Q Consensus 198 I~iLl~~~~s~-d~~irl~Al~WL~e~~~l~~~~l~pf--Lp~LLp~LL~~Lsds-~~eIR~~A~~~n~~Ll~~v~~~~~ 273 (680)
++-|++.++.. ||..|+.|+.=+.+++.++.++-+.- ...++|+|...+.++ +++|...|+++...+++...+..+
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 34455555544 88899999998888888887665543 347899999999976 699999999999999998765432
Q ss_pred -CCChHhHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc-
Q 005727 274 -GFDVGPILSIATRQLSS-EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD- 350 (680)
Q Consensus 274 -~ldl~~iL~vL~~~L~~-~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~- 350 (680)
.+|+ ..+|++.+.|.. +-..+-+.+|..|-.|.+..|..++.- +-+.+.+.-|.-=+-.+...|+-+-+.+|++
T Consensus 249 ~vV~~-~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~A--G~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 249 IVVDE-HAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQA--GALSAVLSYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred eeecc-cchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2333 467888887753 345578889999999999888866532 1111222222222334455777777777731
Q ss_pred -cc---hHHHHHHHHHHhhc-ccchhHHhHHHHHHHHHHhhcCh
Q 005727 351 -LQ---HFRQLVVFLVHNFR-VDNSLLEKRGALIIRRLCVLLDA 389 (680)
Q Consensus 351 -~~---~F~~fm~~LL~lf~-~d~~lLe~rg~~IIrqLc~~L~~ 389 (680)
.+ |+-..++-|..+|. .|++.+|.+.--.-|-.|.....
T Consensus 326 ~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~ 369 (1051)
T KOG0168|consen 326 RSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHG 369 (1051)
T ss_pred CCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccC
Confidence 23 33444455555663 46787777643333433443333
No 122
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=96.27 E-value=0.051 Score=54.06 Aligned_cols=138 Identities=21% Similarity=0.278 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHHhh-ccchhhhHHHHHHHH-----------H-HhhcCCChhHHHHH-HHHHHHHHHH---hh---c
Q 005727 47 RVRYYACEALYNIAKVV-RGDFIIFFNQIFDAL-----------C-KLSADSDANVQSAA-HLLDRLVKDI---VT---E 106 (680)
Q Consensus 47 rVR~~A~eaL~nI~kv~-~~~il~~f~eIfd~L-----------~-kL~aD~d~~Vr~gA-~~Ldrllkdi---v~---e 106 (680)
+||..|..++..++|.. +.....||+.+||.- . -+..|+++.||.+| ..+..+++.. .. +
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 58999999999999884 446669999988875 2 24689999999999 7777766532 11 1
Q ss_pred cc----c-----ccHhhhHHHHHHHh----c-CCCHHHHHHHHHHHHHhhcCCchh-h-hhchHHHHHHHHHhcCCCChh
Q 005727 107 SD----Q-----FSIEEFIPLLRERM----N-VLNPYVRQFLVGWITVLDSVPDID-M-LGFLPDFLDGLFNMLSDSSHE 170 (680)
Q Consensus 107 s~----~-----f~L~~fIP~L~e~i----~-~~np~vR~~avswI~~L~sip~~~-L-i~~Lp~~L~~Lf~lLsD~~~d 170 (680)
.. . ..+...|-.+.+.+ . ..++.+-..++.++..+....+-+ + ..+++++++.+...+.+.+++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 11 1 22344444444333 2 457788888999999998766633 2 357889999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 005727 171 IRQQADSALWEFLQ 184 (680)
Q Consensus 171 VR~~a~~~L~~fL~ 184 (680)
||.++-.|++.++.
T Consensus 161 v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 161 VRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999899888764
No 123
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.27 E-value=0.007 Score=42.25 Aligned_cols=29 Identities=34% Similarity=0.456 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 005727 156 FLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (680)
Q Consensus 156 ~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ 184 (680)
+++.++++++|++++||.+|..+|+.+.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 47788899999999999999999999875
No 124
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=96.18 E-value=0.12 Score=57.23 Aligned_cols=210 Identities=17% Similarity=0.219 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHH--HHHHHHHHHHHHHhhcCCC--------CChHHH
Q 005727 128 PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIR--QQADSALWEFLQEIKNSPS--------VDYGRM 197 (680)
Q Consensus 128 p~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR--~~a~~~L~~fL~ei~~~~~--------~d~~~I 197 (680)
+.++..++..++......+.++.+|+|.|+.+..++|...+.+.| ..+..++. |+..+...+. ..++.|
T Consensus 110 ~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~-FL~~v~~~~~~~~lf~~~~~L~~I 188 (370)
T PF08506_consen 110 EKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQ-FLSSVAESPHHKNLFENKPHLQQI 188 (370)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHH-HHHHHHTSHHHHTTT-SHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHH-HHHHHHcchhHHHHhCCHHHHHHH
Confidence 478888999999998888888999999999999999977554443 44555665 5555543321 123445
Q ss_pred HH-HHHHhcCCCC-----------HH------------HHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhc-CC--c
Q 005727 198 AE-ILVQRAASPD-----------EF------------TRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS-DK--E 250 (680)
Q Consensus 198 I~-iLl~~~~s~d-----------~~------------irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Ls-ds--~ 250 (680)
++ +++.++.-.+ |. -|..|+..+..+++--+..+.+-+...+..++..-+ ++ +
T Consensus 189 ie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~ 268 (370)
T PF08506_consen 189 IEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNN 268 (370)
T ss_dssp HHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-
T ss_pred HHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 44 3333333211 11 255677788877766555555555555555554222 22 3
Q ss_pred hhHHHHHHHHHHHHHHhcc-------CCCCCCChHhHH-----HHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh
Q 005727 251 EKIRVVARETNEELRAIKA-------DPADGFDVGPIL-----SIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL 318 (680)
Q Consensus 251 ~eIR~~A~~~n~~Ll~~v~-------~~~~~ldl~~iL-----~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l 318 (680)
..-++.|....+.+..-.. +....+|+.+.. |-|. -=.+...-.|..|++.+..+....|. +.+
T Consensus 269 w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~---~~l 344 (370)
T PF08506_consen 269 WRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK---EQL 344 (370)
T ss_dssp HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H---HHH
T ss_pred HHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH---HHH
Confidence 3445555544443321111 112234554333 3343 11244566899999999999998876 467
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHH
Q 005727 319 NDIFDTLLKALSDPSDEVVLLVLE 342 (680)
Q Consensus 319 ~~l~p~LL~~LsD~s~eV~~~al~ 342 (680)
.+++|.+++.|.+++.-|+.-|..
T Consensus 345 ~~~~~~l~~~L~~~~~vv~tyAA~ 368 (370)
T PF08506_consen 345 LQIFPLLVNHLQSSSYVVHTYAAI 368 (370)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhhhhh
Confidence 789999999999999888876543
No 125
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.11 E-value=0.1 Score=54.68 Aligned_cols=185 Identities=15% Similarity=0.145 Sum_probs=112.0
Q ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCCh
Q 005727 199 EILVQRAA-SPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV 277 (680)
Q Consensus 199 ~iLl~~~~-s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl 277 (680)
+.|+.-++ +.|+.++..|+..++.....+...-.--=-+.++.|.+.+.++++.+|..|..+...+ ..+..+..-.
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nl---s~~~en~~~I 91 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNL---SVNDENQEQI 91 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhc---CCChhhHHHH
Confidence 33444444 4578899988888876433221110001124578899999999999998887766532 1111111112
Q ss_pred HhHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHH
Q 005727 278 GPILSIATRQLSS--EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFR 355 (680)
Q Consensus 278 ~~iL~vL~~~L~~--~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~~~~F~ 355 (680)
..-++.+.+...+ .+.....++++.|..+.-. ++.-..+...+|.+++.|+..+..++..++++|..+|++...-+
T Consensus 92 k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~--~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~ 169 (254)
T PF04826_consen 92 KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVT--NDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTR 169 (254)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCC--cchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHH
Confidence 2334434443332 2456778999999887432 22233345567778888888888899999999999997655443
Q ss_pred H-----HHHHHHHhhccc--chhHHhHHHHHHHHHHhhcCh
Q 005727 356 Q-----LVVFLVHNFRVD--NSLLEKRGALIIRRLCVLLDA 389 (680)
Q Consensus 356 ~-----fm~~LL~lf~~d--~~lLe~rg~~IIrqLc~~L~~ 389 (680)
. .+..++.+|..+ +..+. |.=.++.++...+..
T Consensus 170 ~Ll~~q~~~~~~~Lf~~~~~~~~l~-~~l~~~~ni~~~~~~ 209 (254)
T PF04826_consen 170 ELLSAQVLSSFLSLFNSSESKENLL-RVLTFFENINENIKK 209 (254)
T ss_pred HHHhccchhHHHHHHccCCccHHHH-HHHHHHHHHHHhhCc
Confidence 3 667888889765 33333 334455666555554
No 126
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.36 Score=57.28 Aligned_cols=227 Identities=15% Similarity=0.194 Sum_probs=152.6
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccccH
Q 005727 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSI 112 (680)
Q Consensus 34 v~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L 112 (680)
....+..+.|+..-+|-||...+..+++.-+..-+..-..|+++....+.|.|+=|=-.| .++..+++- .-
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev--------y~ 800 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV--------YP 800 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh--------cc
Confidence 466788899999999999988887776643333333445788998899999998554444 444445441 12
Q ss_pred hhhHHHHHHHhcC-CC---HHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhc
Q 005727 113 EEFIPLLRERMNV-LN---PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (680)
Q Consensus 113 ~~fIP~L~e~i~~-~n---p~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~ 188 (680)
+.++|.+.+.-.. .+ +..|-..=+.|..+..--+.-...|...+...-.+...||+.+-|-.++..++.+++....
T Consensus 801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAF 880 (982)
T ss_pred hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence 4478888884332 11 3444333356665555555555678887777777888899888899999999999886653
Q ss_pred CCCCChHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhcCcccccchH----hHHHHHhhhhcC-CchhHHHHHHHHHH
Q 005727 189 SPSVDYGRMAEILVQRAA-SPDEFTRLTAITWINEFVKLGGDQLVPYYA----DILGAILPCISD-KEEKIRVVARETNE 262 (680)
Q Consensus 189 ~~~~d~~~II~iLl~~~~-s~d~~irl~Al~WL~e~~~l~~~~l~pfLp----~LLp~LL~~Lsd-s~~eIR~~A~~~n~ 262 (680)
..+-.+.++..-++.-.+ +....+|..|+.-+.++..--|.++.|++. +..-.+++-+.+ .++.+|-.|+.+..
T Consensus 881 ~vsd~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~le 960 (982)
T KOG4653|consen 881 QVSDFFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLE 960 (982)
T ss_pred hhhHHHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 222245555555554433 445679999999999999888889988553 444455555553 35567777888776
Q ss_pred HHHHhc
Q 005727 263 ELRAIK 268 (680)
Q Consensus 263 ~Ll~~v 268 (680)
++....
T Consensus 961 ei~a~l 966 (982)
T KOG4653|consen 961 EIQAAL 966 (982)
T ss_pred HHHHHH
Confidence 655444
No 127
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=96.08 E-value=0.97 Score=58.89 Aligned_cols=239 Identities=13% Similarity=0.138 Sum_probs=139.9
Q ss_pred hhhhhHHHHhhccC-CCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhh-
Q 005727 29 ILQQIVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT- 105 (680)
Q Consensus 29 yL~~Iv~~VL~~l~-D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~- 105 (680)
+-..++.|....+. ..+..||....+++.++.....+.+...|+.||..+.-.+.|.++++-+-| +.+..+++|...
T Consensus 1179 FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~ 1258 (1780)
T PLN03076 1179 FQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPY 1258 (1780)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhh
Confidence 34456655554443 456799999999999998877777888999999999888888877666667 777777777443
Q ss_pred --ccccccHhhhHHHHHHHhcCC-CHHHHHHHHHHHHHh----hcC--------------------------------Cc
Q 005727 106 --ESDQFSIEEFIPLLRERMNVL-NPYVRQFLVGWITVL----DSV--------------------------------PD 146 (680)
Q Consensus 106 --es~~f~L~~fIP~L~e~i~~~-np~vR~~avswI~~L----~si--------------------------------p~ 146 (680)
+...-....+|-.|.+.-... ++.+--.+++.+..+ ... ..
T Consensus 1259 l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 1338 (1780)
T PLN03076 1259 ITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDK 1338 (1780)
T ss_pred ccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccc
Confidence 211122345555655555432 233333344433322 000 00
Q ss_pred hhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCC-----hHHHHHHHHHhcCC--------------
Q 005727 147 IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD-----YGRMAEILVQRAAS-------------- 207 (680)
Q Consensus 147 ~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d-----~~~II~iLl~~~~s-------------- 207 (680)
.+...+.=-+|.+|-++..|+.+|||..|.+.|-+.+..-+.....+ +..++-.|...++.
T Consensus 1339 ~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~ 1418 (1780)
T PLN03076 1339 DDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQG 1418 (1780)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence 11112222355666677889999999998777766665544332221 23344444333221
Q ss_pred ----CC-HH----HHHHHHHHHHHHHHhcC---cccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHh
Q 005727 208 ----PD-EF----TRLTAITWINEFVKLGG---DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAI 267 (680)
Q Consensus 208 ----~d-~~----irl~Al~WL~e~~~l~~---~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~ 267 (680)
.+ .+ ...|+...+..++++-. +.+-+.+|+++..+..|+.-+++.+-.....+...++..
T Consensus 1419 ~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ 1490 (1780)
T PLN03076 1419 VDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSN 1490 (1780)
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 00 01 12233333333333321 344557888888888899988888887777777654433
No 128
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.05 E-value=4.8 Score=47.91 Aligned_cols=307 Identities=14% Similarity=0.165 Sum_probs=166.4
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhcCCCCChHH-HHHHHHHhcCCC-CHHHHHHHHHHHHHHHH---hcCcccccchHhHH
Q 005727 165 SDSSHEIRQQADSALWEFLQEIKNSPSVDYGR-MAEILVQRAASP-DEFTRLTAITWINEFVK---LGGDQLVPYYADIL 239 (680)
Q Consensus 165 sD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~-II~iLl~~~~s~-d~~irl~Al~WL~e~~~---l~~~~l~pfLp~LL 239 (680)
.+..+-+|+-.+-.++.-+. ++ ..-+..+ .-..+++-+++. |-.|++++...+...++ ..++.|.||+|.+-
T Consensus 497 ~~~~RiiRRRVa~ilg~Wvs-vq--~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf 573 (978)
T KOG1993|consen 497 HGNSRIIRRRVAWILGQWVS-VQ--QKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLF 573 (978)
T ss_pred ccchhHHHHHHHHHHhhhhh-ee--chHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHH
Confidence 33556678777666666543 11 1113322 334445556776 44589999888887764 36788999999999
Q ss_pred HHHhhhhcC-CchhHHHHHHHHHHHHHHhccCCCCCC-ChH-hHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhChhhH
Q 005727 240 GAILPCISD-KEEKIRVVARETNEELRAIKADPADGF-DVG-PILSIATRQLS--SEWEATRIEALHWISTLLNRHRTEV 314 (680)
Q Consensus 240 p~LL~~Lsd-s~~eIR~~A~~~n~~Ll~~v~~~~~~l-dl~-~iL~vL~~~L~--~~~~~tR~aaL~WL~~L~~~~p~~~ 314 (680)
..+++.+.. ++-+.|-....+.+.+..-+ ++.+ ++. .++..+-..-. .++...|-+.+..+..+...-+.+-
T Consensus 574 ~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~---~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS 650 (978)
T KOG1993|consen 574 VLLFKLLKAVEECDTKTSVLNLLSTLIERV---SEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQS 650 (978)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCC
Confidence 888887753 23344444344444333322 2222 222 22222222221 2334478888999999999888877
Q ss_pred hhhhHHHHHHHHHhcCCCCHHH---HHHHHHHHHHHhhc----cchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhc
Q 005727 315 LHFLNDIFDTLLKALSDPSDEV---VLLVLEVHACIAKD----LQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLL 387 (680)
Q Consensus 315 ~~~l~~l~p~LL~~LsD~s~eV---~~~al~lLa~Is~~----~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L 387 (680)
.+..+-++|.+-.+..=++|+- ..-+.++|.-.-++ .+.|-...+.++-.+......|.+- =.||.-=-.+.
T Consensus 651 ~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll~L~p~l~~~iE~ste~L~t~-l~Ii~sYilLd 729 (978)
T KOG1993|consen 651 FEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELLLLFPHLLYIIEQSTENLPTV-LMIISSYILLD 729 (978)
T ss_pred ccchHHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHhhc
Confidence 7778888887765544344442 22455555544433 2233333333333333222222221 11222222222
Q ss_pred Ch-------hhHHHHHHHhhcccCChhHHHHHHHHHHHHHhchHHHH--HHHHHHhhccCCcchHHHHHHHHHHhccChh
Q 005727 388 DA-------ERVYRELSTILEGEADLDFACTMVQALNLILLTSSELS--ELRDLLKKSLVNPAGKDLFVSLYASWCHSPM 458 (680)
Q Consensus 388 ~~-------e~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTa~EL~--~lR~~L~~~l~~~~~~~lF~~L~~~w~~n~v 458 (680)
|+ +.|++.+.+.+.+..+-.+. .+..+..+.+.|-|-+. -++-.| --+|.++.+-|.|.=+
T Consensus 730 ~~~fl~~y~~~i~k~~~~~l~dvr~egl~-avLkiveili~t~~il~~~~~~~~L---------~~lf~~I~~~~~yP~~ 799 (978)
T KOG1993|consen 730 NTVFLNDYAFGIFKKLNDLLDDVRNEGLQ-AVLKIVEILIKTNPILGSLLFSPLL---------SRLFLSIAENDKYPYV 799 (978)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHhhhHHHHhhhcchhh---------HHHHHHHHhCCCCchh
Confidence 22 68888888888766554442 34444444555555443 223333 3577788888877666
Q ss_pred HHHHHHHHhh----hhHHHHHHHHHHhhcCcchh
Q 005727 459 AIISLCLLAQ----TYHHASAVIQSLVEEDLNVK 488 (680)
Q Consensus 459 ~~~slcll~~----~Y~~a~~ll~~~~~~~~~~~ 488 (680)
-.-=|-..++ +=+.-..+++...+.|..++
T Consensus 800 ~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~ 833 (978)
T KOG1993|consen 800 MGEYLLVVARISLRNPSLFMSVLQTKNTYDILIA 833 (978)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHH
Confidence 4444444454 44555556665554444433
No 129
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.98 E-value=0.64 Score=49.00 Aligned_cols=204 Identities=19% Similarity=0.188 Sum_probs=132.2
Q ss_pred HhhccCCCCHHHHHHHHHHHHHHHHhhccchh--hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhccccccHhh
Q 005727 37 VLNSFSDQDSRVRYYACEALYNIAKVVRGDFI--IFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEE 114 (680)
Q Consensus 37 VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il--~~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkdiv~es~~f~L~~ 114 (680)
+=.+++|+|..+|.-|.+.|.++........+ ...+-+++-.+.-+.|.. .+..+..++.++++- ..-+.-....
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~~l~gl~~L~~~--~~~~~~~~~~ 80 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQPALKGLLALVKM--KNFSPESAVK 80 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHHHHHHHHHHHhC--cCCChhhHHH
Confidence 34678999999999999998887655443222 334556666665555543 355544667666531 1111112344
Q ss_pred hHHHHHHHhcC--CCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHHhhcCC-
Q 005727 115 FIPLLRERMNV--LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNSP- 190 (680)
Q Consensus 115 fIP~L~e~i~~--~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD-~~~dVR~~a~~~L~~fL~ei~~~~- 190 (680)
++..+.+.... ....+|..+...+..+.......+...=++|+.|+.+.... -+|..=-.+-+.+..+++......
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~ 160 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEF 160 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchh
Confidence 45555543332 33579999999999888777666766678999999986633 455554555666666665554310
Q ss_pred -----------------------------------------CCCh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc-
Q 005727 191 -----------------------------------------SVDY-GRMAEILVQRAASPDEFTRLTAITWINEFVKLG- 227 (680)
Q Consensus 191 -----------------------------------------~~d~-~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~- 227 (680)
...+ +..+|.|++.+.++.+.+|..++..+...+...
T Consensus 161 ~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 161 AEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYG 240 (262)
T ss_pred HHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCC
Confidence 1122 467788888888888889999999888876654
Q ss_pred CcccccchHhHHHHHh
Q 005727 228 GDQLVPYYADILGAIL 243 (680)
Q Consensus 228 ~~~l~pfLp~LLp~LL 243 (680)
+..+.||+..+-.++-
T Consensus 241 ~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 241 ADSLSPHWSTIWNALK 256 (262)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4557888877776653
No 130
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.84 E-value=0.45 Score=54.34 Aligned_cols=211 Identities=17% Similarity=0.192 Sum_probs=124.1
Q ss_pred hhhhHHHHhhccCCC---CHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhh
Q 005727 30 LQQIVPPVLNSFSDQ---DSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (680)
Q Consensus 30 L~~Iv~~VL~~l~D~---d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~ 105 (680)
...++..|++|=..+ |.-+|..+.--=|...+.-.| ......+|.-+.+....+|.+||.-. +.| +++-|.|.
T Consensus 47 flr~vn~IL~~Kk~~si~dRil~fl~~f~~Y~~~~dpeg--~~~V~~~~~h~lRg~eskdk~VR~r~lqil-a~~~d~v~ 123 (885)
T COG5218 47 FLRVVNTILACKKNPSIPDRILSFLKRFFEYDMPDDPEG--EELVAGTFYHLLRGTESKDKKVRKRSLQIL-ALLSDVVR 123 (885)
T ss_pred HHHHHHHhhccccCCCcHHHHHHHHHHHHHhcCCCChhh--hHHHHHHHHHHHhcccCcchhHHHHHHHHH-HHHHHhcc
Confidence 334556667666543 344444432111222221122 23456778888899999999999988 544 44556777
Q ss_pred ccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q 005727 106 ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (680)
Q Consensus 106 es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~e 185 (680)
+-+..--+.++..|.+|+++..+.||.-|+.++..+....+.+=-..- .++.. -+=.||+.+||+.| ++..
T Consensus 124 eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~~-n~l~~--~vqnDPS~EVRr~a------llni 194 (885)
T COG5218 124 EIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRIV-NLLKD--IVQNDPSDEVRRLA------LLNI 194 (885)
T ss_pred hHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHHH-HHHHH--HHhcCcHHHHHHHH------HHHe
Confidence 655544567899999999999999999999999988755442211111 12222 22389999999987 2221
Q ss_pred hhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHH
Q 005727 186 IKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETN 261 (680)
Q Consensus 186 i~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n 261 (680)
. .. .+-.|+++.++.+.+...|.-.-+ +.+-.+|.-....-=|+++ .+-..+-|.+..+|.++.++.
T Consensus 195 ~-vd-----nsT~p~IlERarDv~~anRr~vY~--r~Lp~iGd~~~lsi~kri~-l~ewgl~dRe~sv~~a~~d~i 261 (885)
T COG5218 195 S-VD-----NSTYPCILERARDVSGANRRMVYE--RCLPRIGDLKSLSIDKRIL-LMEWGLLDREFSVKGALVDAI 261 (885)
T ss_pred e-eC-----CCcchhHHHHhhhhhHHHHHHHHH--HHhhhhcchhhccccceeh-hhhhcchhhhhhHHHHHHHHH
Confidence 1 11 234577888888877666653211 1122232222222223333 344466777777877766543
No 131
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=95.80 E-value=0.13 Score=62.91 Aligned_cols=175 Identities=19% Similarity=0.197 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHhhccchhhhHHHHHHHHHHh----hcCCChhHHHHHHHHHHHHHHHhhccccccHhhhHHHHHHHhc
Q 005727 49 RYYACEALYNIAKVVRGDFIIFFNQIFDALCKL----SADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMN 124 (680)
Q Consensus 49 R~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL----~aD~d~~Vr~gA~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~ 124 (680)
|..|-.+|..+++...+......+.+++.|.+- +...|..+-.- +.+..+.-. ..+.-.++-...|.+..+.+
T Consensus 750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d~~~~s~-~vf~s~~~~--m~s~l~~~~~~l~~l~~~~~ 826 (1549)
T KOG0392|consen 750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGNDEFLSSF-EVFNSLAPL--MHSFLHPLGSLLPRLFFFVR 826 (1549)
T ss_pred hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCcchhhhH-HHHHHHHHh--hhhhhhhhhhhhhHHHHhcc
Confidence 566666677777777776655555555555543 22222111000 001111000 01111124456788888888
Q ss_pred CCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHh
Q 005727 125 VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQR 204 (680)
Q Consensus 125 ~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~ 204 (680)
+..+.+|..+..+|+.+.+....+. +-.+..++..++.|.+.-+|++.+.++-
T Consensus 827 s~~~a~r~~~ar~i~~~~k~~~~e~---m~~v~~~~~~ll~~~~~~~~r~~a~e~~------------------------ 879 (1549)
T KOG0392|consen 827 SIHIAVRYAAARCIGTMFKSATRET---MATVINGFLPLLGDLDKFVRRQGADELI------------------------ 879 (1549)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhccchhhHhhhhhHHHHH------------------------
Confidence 8888888888888887766554332 2233344444777777667665543322
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhcc
Q 005727 205 AASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA 269 (680)
Q Consensus 205 ~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~ 269 (680)
..+.......+.||.|-++|.++++|+|..+.+|.+|.++-..+..++.
T Consensus 880 ----------------~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 880 ----------------ELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred ----------------HHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccc
Confidence 2233455667899999999999999999999999999999887766554
No 132
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=95.72 E-value=0.15 Score=50.56 Aligned_cols=96 Identities=25% Similarity=0.273 Sum_probs=78.9
Q ss_pred CCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh-ChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh---
Q 005727 273 DGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR-HRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA--- 348 (680)
Q Consensus 273 ~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~-~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is--- 348 (680)
+.+||+..+++..+.+.....+-|.-|.+-+..+.+. .++++.|.++++++.|-+.|+-.+++|+..++.+|..+.
T Consensus 32 e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 32 EKLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred hhcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 4689999999999999988888888888888888888 999999999999999999999999999999999999984
Q ss_pred hc-----cchHHHHHHHHHHhhcccc
Q 005727 349 KD-----LQHFRQLVVFLVHNFRVDN 369 (680)
Q Consensus 349 ~~-----~~~F~~fm~~LL~lf~~d~ 369 (680)
+. .+|++++++.+ ++|++.+
T Consensus 112 ~~vG~aLvPyyrqLLp~l-n~f~~k~ 136 (183)
T PF10274_consen 112 DMVGEALVPYYRQLLPVL-NLFKNKN 136 (183)
T ss_pred hhhhHHHHHHHHHHHHHH-HHHHhcc
Confidence 21 34666655544 3344444
No 133
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.65 E-value=0.33 Score=59.33 Aligned_cols=160 Identities=18% Similarity=0.253 Sum_probs=113.6
Q ss_pred hHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhc-CCchhHHHHHHHHHHHHHHhc
Q 005727 194 YGRMAEILVQRAAS----PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS-DKEEKIRVVARETNEELRAIK 268 (680)
Q Consensus 194 ~~~II~iLl~~~~s----~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Ls-ds~~eIR~~A~~~n~~Ll~~v 268 (680)
++++.|+++.-|+. ++|++|.+|--.++.|+-++. .|...=+|.++..|. .+.|-||.=+.-+.+++
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa----~fces~l~llftimeksp~p~IRsN~VvalgDl---- 988 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA----EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDL---- 988 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhcCCCceeeecchheccch----
Confidence 46677888887743 478889888888888766654 345555667777777 55777774333333322
Q ss_pred cCCCCCCCh----HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005727 269 ADPADGFDV----GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVH 344 (680)
Q Consensus 269 ~~~~~~ldl----~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lL 344 (680)
++-| ++.-+.|-.+|.+++..+|..|+..+.+|.-+.+=++..+ ++.+-.||.|+.++|+..|-...
T Consensus 989 -----av~fpnlie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKGq----l~eMA~cl~D~~~~IsdlAk~FF 1059 (1251)
T KOG0414|consen 989 -----AVRFPNLIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKGQ----LSEMALCLEDPNAEISDLAKSFF 1059 (1251)
T ss_pred -----hhhcccccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhccc----HHHHHHHhcCCcHHHHHHHHHHH
Confidence 1223 4455678888999999999999999999998887776655 45566788999999999888544
Q ss_pred HHHh------------------h---ccchHHHHHHHHHHhhcccch
Q 005727 345 ACIA------------------K---DLQHFRQLVVFLVHNFRVDNS 370 (680)
Q Consensus 345 a~Is------------------~---~~~~F~~fm~~LL~lf~~d~~ 370 (680)
.+++ + .++-|+.+|+-|+..+++|++
T Consensus 1060 ~Els~k~n~iynlLPdil~~Ls~~~l~~~~~~~vm~~li~~ikkder 1106 (1251)
T KOG0414|consen 1060 KELSSKGNTIYNLLPDILSRLSNGNLEEESYKTVMEFLIGLIKKDER 1106 (1251)
T ss_pred HHhhhcccchhhhchHHHHhhccCcccchhhHHHHHHHHHHhccccc
Confidence 4444 2 245678888888888888754
No 134
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.64 E-value=1.3 Score=46.77 Aligned_cols=206 Identities=15% Similarity=0.196 Sum_probs=126.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHH-HhhcCCchhhhh-chHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChH
Q 005727 118 LLRERMNVLNPYVRQFLVGWIT-VLDSVPDIDMLG-FLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYG 195 (680)
Q Consensus 118 ~L~e~i~~~np~vR~~avswI~-~L~sip~~~Li~-~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~ 195 (680)
.|-+.+.++++.+|.-+++.+. ++..+|+..+.. -..-+++-....+.|. +.+..+ ..++..++ ..+.-+.....
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~-~~~~~~-l~gl~~L~-~~~~~~~~~~~ 79 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH-ACVQPA-LKGLLALV-KMKNFSPESAV 79 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH-hhHHHH-HHHHHHHH-hCcCCChhhHH
Confidence 3567888999999999999999 555677544322 2333333333445332 234443 45555555 23332223466
Q ss_pred HHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCC-chhHHHHHHHHH-----------
Q 005727 196 RMAEILVQRAASP--DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDK-EEKIRVVARETN----------- 261 (680)
Q Consensus 196 ~II~iLl~~~~s~--d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds-~~eIR~~A~~~n----------- 261 (680)
.++..+.++...+ -...|..+...+..+++-....+...-+..+.+++..+..+ ||.-=-.+-+.+
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~ 159 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISE 159 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccch
Confidence 7777777755433 35678888888888877665555555567777777766533 443111111111
Q ss_pred --HHHHHhccC--------CC-C--C-----------------CCh-HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC
Q 005727 262 --EELRAIKAD--------PA-D--G-----------------FDV-GPILSIATRQLSSEWEATRIEALHWISTLLNRH 310 (680)
Q Consensus 262 --~~Ll~~v~~--------~~-~--~-----------------ldl-~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~ 310 (680)
+++.+.+.- ++ + + ..| +..++.|.+.|.++...+|..+++.|.+-.+.+
T Consensus 160 ~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y 239 (262)
T PF14500_consen 160 FAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENY 239 (262)
T ss_pred hHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHC
Confidence 122222210 11 1 1 112 567888999999998889999999999999998
Q ss_pred hhh-HhhhhHHHHHHHH
Q 005727 311 RTE-VLHFLNDIFDTLL 326 (680)
Q Consensus 311 p~~-~~~~l~~l~p~LL 326 (680)
+.+ +.+|...+..+|-
T Consensus 240 ~~~~~~~~~~~iw~~lk 256 (262)
T PF14500_consen 240 GADSLSPHWSTIWNALK 256 (262)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 765 7888888877663
No 135
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.56 E-value=1.3 Score=59.86 Aligned_cols=295 Identities=18% Similarity=0.229 Sum_probs=171.5
Q ss_pred hHHHHhhccCCCCHHHHHHHHHHHHHHHHhh--------ccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHH
Q 005727 33 IVPPVLNSFSDQDSRVRYYACEALYNIAKVV--------RGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDI 103 (680)
Q Consensus 33 Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~--------~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdi 103 (680)
+++.+..|+...+..+|..+-.+++.|-... ++..++.|..+++.+++++-|+...-|.|+ .++..+++
T Consensus 985 ~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~-- 1062 (3550)
T KOG0889|consen 985 FLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE-- 1062 (3550)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh--
Confidence 5688888999999999998877776543211 112345667777777777777777666666 33222222
Q ss_pred hhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHH----HHHHHH
Q 005727 104 VTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQ----QADSAL 179 (680)
Q Consensus 104 v~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~----~a~~~L 179 (680)
+.|...+..+.-+++.+++..+.|...++.. .|..++
T Consensus 1063 ---------------------------------------~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l 1103 (3550)
T KOG0889|consen 1063 ---------------------------------------SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDIL 1103 (3550)
T ss_pred ---------------------------------------hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHH
Confidence 2222334566677888888888887666654 455566
Q ss_pred HHHHHHhhcCCC------CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHH-hhhhcCC---
Q 005727 180 WEFLQEIKNSPS------VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAI-LPCISDK--- 249 (680)
Q Consensus 180 ~~fL~ei~~~~~------~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~L-L~~Lsds--- 249 (680)
..+++.+..... .-...++..++..+.++++.||..+.+-+..+.+..+......+...-..+ .|-....
T Consensus 1104 ~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~ 1183 (3550)
T KOG0889|consen 1104 MDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRA 1183 (3550)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccccccc
Confidence 666655543211 125678889999999999999999999998888776544322222222222 1111111
Q ss_pred -chhHHHHHHHHHHHHHHhccCCCCCCChH-------------------hHHHHHHHhcC----CCcHHHHHHHHHHHHH
Q 005727 250 -EEKIRVVARETNEELRAIKADPADGFDVG-------------------PILSIATRQLS----SEWEATRIEALHWIST 305 (680)
Q Consensus 250 -~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~-------------------~iL~vL~~~L~----~~~~~tR~aaL~WL~~ 305 (680)
...+.-.-.+++...+.. ....+|+. +... +..... ......|.+|++.++.
T Consensus 1184 ~p~~~qig~vd~~~fC~~l---~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~ 1259 (3550)
T KOG0889|consen 1184 LPFTIQIGHLDAITFCLSL---GPCLFDFTEELYRLKRFLIALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAA 1259 (3550)
T ss_pred CCHHHHhhhHHHHHHHHHc---CCcccCchHHHHHHHHHHHHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHH
Confidence 000000000111111111 11111111 1111 111111 1223459999999887
Q ss_pred HHhhChh---hHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc-----chHHHHHHHHHHhhcccchhH
Q 005727 306 LLNRHRT---EVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDL-----QHFRQLVVFLVHNFRVDNSLL 372 (680)
Q Consensus 306 L~~~~p~---~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~~-----~~F~~fm~~LL~lf~~d~~lL 372 (680)
.....+- ...++-++++..+.+.|.-+++|+...+...+..+-..+ +.....|..++..+.+.+++.
T Consensus 1260 ~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrplL~~l~d~~~ls 1334 (3550)
T KOG0889|consen 1260 CMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGLRKVLAQDVKLPKELLQSHLRPLLMNLSDHNNLS 1334 (3550)
T ss_pred HHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccccccHHHHHhhHHHHHHhhhHhhhhh
Confidence 7666544 345667889999999999999999998888777665432 344556666666666555443
No 136
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=95.54 E-value=5.1 Score=44.43 Aligned_cols=232 Identities=19% Similarity=0.185 Sum_probs=147.2
Q ss_pred cccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc-hh-h-hhchHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHH
Q 005727 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD-ID-M-LGFLPDFLDGLFNMLSDSSH-EIRQQADSALWEFLQ 184 (680)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~-~~-L-i~~Lp~~L~~Lf~lLsD~~~-dVR~~a~~~L~~fL~ 184 (680)
+..+..+++.+...+.+.++.||..+.-.+..+..-+. .. + ..++|-|+- ..+-.|.+. .-|.+|-+....|+.
T Consensus 20 ~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii--~SL~~~~~~~~ER~QALkliR~~l~ 97 (371)
T PF14664_consen 20 DLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFII--RSLDRDNKNDVEREQALKLIRAFLE 97 (371)
T ss_pred hhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhH--hhhcccCCChHHHHHHHHHHHHHHH
Confidence 34566688888877777779999999999987765443 11 1 123333332 123344433 458888888887765
Q ss_pred HhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHH
Q 005727 185 EIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEEL 264 (680)
Q Consensus 185 ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~L 264 (680)
++..+..=-..++..++....++++..|..|++.+.|++-..|+-+. -.+-+..++..+.|...+ .+......+
T Consensus 98 -~~~~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~--~~gG~~~L~~~l~d~~~~---~~~~l~~~l 171 (371)
T PF14664_consen 98 -IKKGPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVA--ECGGIRVLLRALIDGSFS---ISESLLDTL 171 (371)
T ss_pred -hcCCcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHH--HcCCHHHHHHHHHhccHh---HHHHHHHHH
Confidence 32211111267888999999999999999999999998766553221 123346667777765444 344455566
Q ss_pred HHhccCCC------CCCChHhHHHHHHHh----cCCCcHHHHHH-HHHHHHHHHhhChhhHh-hhhH-HHHHHHHHhcCC
Q 005727 265 RAIKADPA------DGFDVGPILSIATRQ----LSSEWEATRIE-ALHWISTLLNRHRTEVL-HFLN-DIFDTLLKALSD 331 (680)
Q Consensus 265 l~~v~~~~------~~ldl~~iL~vL~~~----L~~~~~~tR~a-aL~WL~~L~~~~p~~~~-~~l~-~l~p~LL~~LsD 331 (680)
+.+...+. .+.|++.++...+.. ..++.+..|.. +-..+..+.+.-+.-+. ...+ .-+..|+.+|.-
T Consensus 172 L~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~ 251 (371)
T PF14664_consen 172 LYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRL 251 (371)
T ss_pred HHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcC
Confidence 66666542 256788888877776 23322222443 33455555555444331 2222 567889999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q 005727 332 PSDEVVLLVLEVHACIA 348 (680)
Q Consensus 332 ~s~eV~~~al~lLa~Is 348 (680)
|++++|+..+.++-.+-
T Consensus 252 p~~~ir~~Ildll~dll 268 (371)
T PF14664_consen 252 PNPEIRKAILDLLFDLL 268 (371)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999988876
No 137
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=95.54 E-value=0.13 Score=63.02 Aligned_cols=290 Identities=17% Similarity=0.180 Sum_probs=169.5
Q ss_pred HHHHHHHHHhhhhhhhh-hhhhhhhhHHHHhhccC-CCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHh-hcCC
Q 005727 9 FEIIVEQFLLYADLFFY-SETILQQIVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKL-SADS 85 (680)
Q Consensus 9 ~~~~~~~~~~~~~~~~~-~~~yL~~Iv~~VL~~l~-D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL-~aD~ 85 (680)
+++++.-.++.+.+.+. +..-+..++.|+...+. +.+.....+|++++..+...|++..-.--..++...|.. ..|+
T Consensus 624 ~~~~i~s~~a~~~~~~~~~pekl~p~I~plm~tik~e~n~~~q~~~~e~~~~L~~~~~~r~p~~~~k~~k~~c~~~~~~p 703 (1549)
T KOG0392|consen 624 LEIRIKSLLASAVVTFETLPEKLNPIIRPLMETIKKEENAMLQPAAAEALAYLIQQCKDRKPNPYGKPLKKACESECVDP 703 (1549)
T ss_pred cchhhhhchhhHHHHHhcCchhhhhHHHHHHHHHHhhhHhHhHHHHHHHHHHHHHHHhccCCCccccHHHHHHhhhcCCc
Confidence 34444444444443333 35567777777777664 667788899999987776666643211112233333322 2333
Q ss_pred ChhHHHHHH------HHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHH
Q 005727 86 DANVQSAAH------LLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDG 159 (680)
Q Consensus 86 d~~Vr~gA~------~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~ 159 (680)
...-.-||. .++....+.-.. .....-.=.++-...-...|..+--.++.+...-+..+...+|.+.+.
T Consensus 704 ~~~p~~~a~~~~~~~~~~~~~~s~~~~-----~~~~~~~g~eea~~~~~~errgael~L~~l~~~fg~sl~~klp~l~~~ 778 (1549)
T KOG0392|consen 704 SRAPGLGASIRSIHPMVDPLINDYTRM-----VASNLAPGLEEAQALISFERRGAELFLKILSKMFGGSLAAKLPHLWDF 778 (1549)
T ss_pred ccCCccccccccccccccccccchhhh-----hccccCcchhhhhhhHHHHhhhHHHHHHHHHHHhhHHHHHhcchHHHH
Confidence 221111110 011111110000 000000111111122235688888888999998898999999999999
Q ss_pred HHHhcCCC-ChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhH
Q 005727 160 LFNMLSDS-SHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADI 238 (680)
Q Consensus 160 Lf~lLsD~-~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~L 238 (680)
|++-+++. +.+ +.++..+. +.+ ......+..+.| +-..
T Consensus 779 L~~~L~~~~~~~---------d~~~~s~~---------vf~----------------------s~~~~m~s~l~~-~~~~ 817 (1549)
T KOG0392|consen 779 LLKALSGLIDGN---------DEFLSSFE---------VFN----------------------SLAPLMHSFLHP-LGSL 817 (1549)
T ss_pred HHHhhhccCCCC---------cchhhhHH---------HHH----------------------HHHHhhhhhhhh-hhhh
Confidence 88877652 211 12222110 000 011122333444 5567
Q ss_pred HHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhChhhHhhh
Q 005727 239 LGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS-EWEATRIEALHWISTLLNRHRTEVLHF 317 (680)
Q Consensus 239 Lp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~-~~~~tR~aaL~WL~~L~~~~p~~~~~~ 317 (680)
+|.++.+..+.+..+|-+|.++-+.+.+...... ...+++.+...+.+ +....|..+...+..+......++.||
T Consensus 818 l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~----m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~ 893 (1549)
T KOG0392|consen 818 LPRLFFFVRSIHIAVRYAAARCIGTMFKSATRET----MATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPY 893 (1549)
T ss_pred hhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhccccccc
Confidence 7888889899999999999888876655432100 12333444444443 334467788888888888999999999
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005727 318 LNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 318 l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is 348 (680)
.+-++|.|++.++|..+.||..+.++.+.+.
T Consensus 894 ~~Llv~pllr~msd~~d~vR~aat~~fa~li 924 (1549)
T KOG0392|consen 894 NPLLVVPLLRRMSDQIDSVREAATKVFAKLI 924 (1549)
T ss_pred ceeehhhhhcccccchHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999877
No 138
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.47 E-value=4.3 Score=45.93 Aligned_cols=222 Identities=8% Similarity=0.134 Sum_probs=122.4
Q ss_pred CCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCh----HHHHHHHHHhcCCC-CHHHHHHHHH
Q 005727 144 VPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDY----GRMAEILVQRAASP-DEFTRLTAIT 218 (680)
Q Consensus 144 ip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~----~~II~iLl~~~~s~-d~~irl~Al~ 218 (680)
.++.++.++...++..||+.+.-++..--+-.-+|+-+.+..++....... +.++.++..-+++| +|.--....+
T Consensus 15 ~~~~di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFE 94 (435)
T PF03378_consen 15 FSKADIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFE 94 (435)
T ss_dssp S-GGGTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHH
T ss_pred ECHHHhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHH
Confidence 456788999999999999988443211011122344455554444333333 44444554445554 4556666667
Q ss_pred HHHHHHHhc----CcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHH
Q 005727 219 WINEFVKLG----GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEA 294 (680)
Q Consensus 219 WL~e~~~l~----~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~ 294 (680)
-++.+++.. ++.+..|-+.++|.+...|..+..|.-.-+-.....+++.-...+-.-.|.++++.|..-- -|+
T Consensus 95 si~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~---lWe 171 (435)
T PF03378_consen 95 SIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPA---LWE 171 (435)
T ss_dssp HHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGG---GGG
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcc---hhc
Confidence 777666553 3445567788888888888765444333333344444444331111123666666554322 122
Q ss_pred H--H-HHHHHHHHHHHhhChhhHh--hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh------ccchHHHHHHHHHH
Q 005727 295 T--R-IEALHWISTLLNRHRTEVL--HFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK------DLQHFRQLVVFLVH 363 (680)
Q Consensus 295 t--R-~aaL~WL~~L~~~~p~~~~--~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~------~~~~F~~fm~~LL~ 363 (680)
. - =+..+.|.++.++.|..+. +++..++...=+.++.+..+ +.+..+|..|.. =++|++.+..-+++
T Consensus 172 ~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~ 249 (435)
T PF03378_consen 172 RRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLT 249 (435)
T ss_dssp STTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHH
T ss_pred cCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 1 1 2334578888889988875 67777777666677666544 235566666652 26799999999999
Q ss_pred hhcccch
Q 005727 364 NFRVDNS 370 (680)
Q Consensus 364 lf~~d~~ 370 (680)
++.+.+.
T Consensus 250 RLq~skT 256 (435)
T PF03378_consen 250 RLQSSKT 256 (435)
T ss_dssp HHHHC--
T ss_pred HHhhCCc
Confidence 9976543
No 139
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=95.38 E-value=2.3 Score=51.27 Aligned_cols=66 Identities=14% Similarity=0.162 Sum_probs=48.1
Q ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005727 280 ILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (680)
Q Consensus 280 iL~vL~~~L~-~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~ 349 (680)
.+|.+.++|. ++...+|--.+..++.+...+ ....+.++|-+-.+|.||++-||..++-+|+++-+
T Consensus 969 ~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq 1035 (1529)
T KOG0413|consen 969 LMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAASLCDPSVIVRRQTIILLARLLQ 1035 (1529)
T ss_pred HHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHh
Confidence 6677777775 334445655555555554443 34578899999999999999999999999998763
No 140
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.26 E-value=6.2 Score=43.69 Aligned_cols=214 Identities=12% Similarity=0.105 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHhhcCCchhhhhchH-----HHHHHHHHhcCCCC--hhHHHHHHHHHHHHHHHhhcCCCC---Ch-HH
Q 005727 128 PYVRQFLVGWITVLDSVPDIDMLGFLP-----DFLDGLFNMLSDSS--HEIRQQADSALWEFLQEIKNSPSV---DY-GR 196 (680)
Q Consensus 128 p~vR~~avswI~~L~sip~~~Li~~Lp-----~~L~~Lf~lLsD~~--~dVR~~a~~~L~~fL~ei~~~~~~---d~-~~ 196 (680)
.++-..|+..++.+...|. +...+| .+++..+..+.|++ +.+-...-. +++.-+-.+.+ +. ..
T Consensus 60 ~~L~~qALkll~~~l~~~~--i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~----~ls~Q~f~~~~~~~~~~~~ 133 (372)
T PF12231_consen 60 SRLVIQALKLLGFFLYHPE--IVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLW----CLSDQKFSPKIMTSDRVER 133 (372)
T ss_pred hHHHHHHHHHHHHHHccHH--HHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHcCCCCCcccchhhHHH
Confidence 3455667777776654443 222222 36777777887754 344443322 23322222222 22 33
Q ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCC----
Q 005727 197 MAEILVQRAA-SPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADP---- 271 (680)
Q Consensus 197 II~iLl~~~~-s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~---- 271 (680)
++..+..--. -+.-.+-.+++.-+..++.-.|..|......=+|.+++.|.++..++|..|..........++..
T Consensus 134 l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s 213 (372)
T PF12231_consen 134 LLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELS 213 (372)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHH
Confidence 3333332221 23345666677788888888898999988888899999999999999998766554433222210
Q ss_pred -------CCCC---Ch-HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC-h-hhHhhhhHHHHHHHHHhcCCCCHHHHH
Q 005727 272 -------ADGF---DV-GPILSIATRQLSSEWEATRIEALHWISTLLNRH-R-TEVLHFLNDIFDTLLKALSDPSDEVVL 338 (680)
Q Consensus 272 -------~~~l---dl-~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~-p-~~~~~~l~~l~p~LL~~LsD~s~eV~~ 338 (680)
.... -+ +.+.+.|.+.+.+.. .-+.+-=-|...+.-.. + -+-.+|+.+.+...-+|++++++.++.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~-~~~~a~~iW~~~i~LL~~~~~~~w~~~n~wL~v~e~cFn~~d~~~k~ 292 (372)
T PF12231_consen 214 KSVLEDLQRSLENGKLIQLYCERLKEMIKSKD-EYKLAMQIWSVVILLLGSSRLDSWEHLNEWLKVPEKCFNSSDPQVKI 292 (372)
T ss_pred HHHHHHhccccccccHHHHHHHHHHHHHhCcC-CcchHHHHHHHHHHHhCCchhhccHhHhHHHHHHHHHhcCCCHHHHH
Confidence 0000 11 223344555554421 12222223554333332 2 344578889999999999999999999
Q ss_pred HHHHHHHHHh
Q 005727 339 LVLEVHACIA 348 (680)
Q Consensus 339 ~al~lLa~Is 348 (680)
.|...|.++.
T Consensus 293 ~A~~aW~~li 302 (372)
T PF12231_consen 293 QAFKAWRRLI 302 (372)
T ss_pred HHHHHHHHHH
Confidence 9999998877
No 141
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.25 E-value=0.72 Score=49.30 Aligned_cols=144 Identities=16% Similarity=0.199 Sum_probs=98.4
Q ss_pred HHHHHHHHHhcCccccc--chHhHHHH-HhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcH
Q 005727 217 ITWINEFVKLGGDQLVP--YYADILGA-ILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWE 293 (680)
Q Consensus 217 l~WL~e~~~l~~~~l~p--fLp~LLp~-LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~ 293 (680)
+.....+++.....+-| .+..++.. |+|++...++++|+.|.++.|-. -++.... -.+-++.+...+..+..
T Consensus 4 L~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~-~Lld~~~----a~~~l~l~~~~~~~~~~ 78 (298)
T PF12719_consen 4 LSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLC-CLLDKEL----AKEHLPLFLQALQKDDE 78 (298)
T ss_pred HHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHhChHH----HHHHHHHHHHHHHhCCH
Confidence 33444444444344554 34477764 55999999999999999999843 2222100 14556667777766788
Q ss_pred HHHHHHHHHHHHHHhhChhhHhhhhH---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccch--HHHHHHHHH
Q 005727 294 ATRIEALHWISTLLNRHRTEVLHFLN---------DIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQH--FRQLVVFLV 362 (680)
Q Consensus 294 ~tR~aaL~WL~~L~~~~p~~~~~~l~---------~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~~~~--F~~fm~~LL 362 (680)
.+|..|++.+..+...++..+.+... .+...+.+.|.+.+++++..+++-++++--.+.. -..++..|+
T Consensus 79 ~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Ll 158 (298)
T PF12719_consen 79 EVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLL 158 (298)
T ss_pred HHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 89999999999999988876654443 5788888999999999999999999987622211 234555555
Q ss_pred Hhh
Q 005727 363 HNF 365 (680)
Q Consensus 363 ~lf 365 (680)
-.+
T Consensus 159 l~y 161 (298)
T PF12719_consen 159 LLY 161 (298)
T ss_pred HHH
Confidence 544
No 142
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=95.14 E-value=0.16 Score=49.49 Aligned_cols=115 Identities=22% Similarity=0.234 Sum_probs=71.2
Q ss_pred chHHHHHHHHHhc-CCCChhHHHHHHHHHHHHHHHhh--------cCCC----------------------C-----ChH
Q 005727 152 FLPDFLDGLFNML-SDSSHEIRQQADSALWEFLQEIK--------NSPS----------------------V-----DYG 195 (680)
Q Consensus 152 ~Lp~~L~~Lf~lL-sD~~~dVR~~a~~~L~~fL~ei~--------~~~~----------------------~-----d~~ 195 (680)
-.|++++.|++++ ++.+.++|++|-++||.+.. +. .... . +-.
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~ 85 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGILGA-LDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPT 85 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHH
Confidence 4699999999999 56789999999999886632 21 0000 0 001
Q ss_pred HHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHh
Q 005727 196 RMAEILVQRAASPDEF-TRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAI 267 (680)
Q Consensus 196 ~II~iLl~~~~s~d~~-irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~ 267 (680)
-.++.|+.-++++.-. -...++..+..+.+..|....||+|+++|.++..+...++..|+.--.....+...
T Consensus 86 vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 86 VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 1233333333333211 12234444444444556667999999999999999977778887766555555444
No 143
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.07 E-value=9.6 Score=46.36 Aligned_cols=71 Identities=21% Similarity=0.241 Sum_probs=60.0
Q ss_pred hHHHHHHHhcCCCcHHHHHHHHHHHH---HHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005727 279 PILSIATRQLSSEWEATRIEALHWIS---TLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (680)
Q Consensus 279 ~iL~vL~~~L~~~~~~tR~aaL~WL~---~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~ 349 (680)
.|+.--...|.+++-..|+++|+.+. -+...+++.+.|.....-|.++.++.+.++.++..+++++..+++
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~ 876 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGK 876 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 34444445567888889999998776 677778999999999999999999999999999999999888885
No 144
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.95 E-value=12 Score=45.53 Aligned_cols=288 Identities=14% Similarity=0.123 Sum_probs=163.3
Q ss_pred HHHHhhhhhhhhhhhhhhhhHHHHhhccC-CCCHHHHHHHHHHHHHHHHhhcc---chhhhHHHHHHHHHHhhcCCChhH
Q 005727 14 EQFLLYADLFFYSETILQQIVPPVLNSFS-DQDSRVRYYACEALYNIAKVVRG---DFIIFFNQIFDALCKLSADSDANV 89 (680)
Q Consensus 14 ~~~~~~~~~~~~~~~yL~~Iv~~VL~~l~-D~d~rVR~~A~eaL~nI~kv~~~---~il~~f~eIfd~L~kL~aD~d~~V 89 (680)
+-+..|+.+=|....-+..+..-+.+||. |.+--||--|+-||-........ .+.++.+++.+.|.+++.+.+.+.
T Consensus 484 ~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~ 563 (1010)
T KOG1991|consen 484 WVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDD 563 (1010)
T ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhH
Confidence 33445555555557778889999999998 99999999999999887655543 366899999999999998887654
Q ss_pred HHHHHHHHHHHHHHhhccccccHh---hhHHHHHHHhcC---CCH---HHHHHHHHHHHHhhcC----Cc-hhhhh-chH
Q 005727 90 QSAAHLLDRLVKDIVTESDQFSIE---EFIPLLRERMNV---LNP---YVRQFLVGWITVLDSV----PD-IDMLG-FLP 154 (680)
Q Consensus 90 r~gA~~Ldrllkdiv~es~~f~L~---~fIP~L~e~i~~---~np---~vR~~avswI~~L~si----p~-~~Li~-~Lp 154 (680)
-... ++.++.....|-..|+.+ .+.......+.+ .++ .--..|++.++.+.++ .. .++.. .=|
T Consensus 564 Lt~v--me~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~ 641 (1010)
T KOG1991|consen 564 LTNV--MEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEP 641 (1010)
T ss_pred HHHH--HHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3222 333333333333333221 122222233332 222 2233444555543322 11 11222 223
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccccc-
Q 005727 155 DFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP- 233 (680)
Q Consensus 155 ~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~p- 233 (680)
.+++..-.++.....|+=+++.+......--.+. ..+.+=++.+.+.+..++..-.-=...+-|+..++..+...+..
T Consensus 642 ~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~-Isp~mW~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~ 720 (1010)
T KOG1991|consen 642 IVLPVIGFILKNDITDFYEELLEIVSSLTFLSKE-ISPIMWGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSN 720 (1010)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcc-cCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhcc
Confidence 4444444555555556666665555544332211 24556667777777776655333444667888888888776643
Q ss_pred --chHhHHHHHhhhhcCC---chhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCC--CcHHHHHHHHHHHHHH
Q 005727 234 --YYADILGAILPCISDK---EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS--EWEATRIEALHWISTL 306 (680)
Q Consensus 234 --fLp~LLp~LL~~Lsds---~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~--~~~~tR~aaL~WL~~L 306 (680)
|+.-+...+-++|... +.+++ .|.+..+.++-.+++ .-.--.+..+.+....+.. +....|.-+++....-
T Consensus 721 ~~y~~il~~i~~~~l~~e~~~D~d~~-~a~kLle~iiL~~kg-~~dq~iplf~~~a~~~l~~~~e~s~~~~~~leVvina 798 (1010)
T KOG1991|consen 721 PDYLQILLEIIKKVLTSENGEDSDCE-SACKLLEVIILNCKG-LLDQYIPLFLELALSRLTREVETSELRVMLLEVVINA 798 (1010)
T ss_pred chHHHHHHHHHHHHHcCCCCchHHHH-HHHHHHHHHHHHhcC-cHhhHhHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 4555666666677653 34444 345555555444443 1111246666666666654 5566788888765543
No 145
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=3.1 Score=49.69 Aligned_cols=203 Identities=18% Similarity=0.256 Sum_probs=136.7
Q ss_pred CCChHhHHHHHHHhcCCCc-HHHHHHHHHHHHHHHhhChhhHhhhhH-HHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhc
Q 005727 274 GFDVGPILSIATRQLSSEW-EATRIEALHWISTLLNRHRTEVLHFLN-DIFDTLLKALSD-PSDEVVLLVLEVHACIAKD 350 (680)
Q Consensus 274 ~ldl~~iL~vL~~~L~~~~-~~tR~aaL~WL~~L~~~~p~~~~~~l~-~l~p~LL~~LsD-~s~eV~~~al~lLa~Is~~ 350 (680)
.+....++|+|...|.+++ .+...-|.+.|..+.+.+|....--.+ ..+|.|+..|-- +--+|-+.++++|..||..
T Consensus 206 ~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~ 285 (1051)
T KOG0168|consen 206 GFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR 285 (1051)
T ss_pred cccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh
Confidence 5678899999999998775 668999999999999999997654433 577877755542 3356778899999999931
Q ss_pred --cchHHH----HHHHHHHhhcccchhHHhHHHH-HHHHHHhhcChhhHHHHHHHhhcccCChhHHHHHHHHHHHHHhch
Q 005727 351 --LQHFRQ----LVVFLVHNFRVDNSLLEKRGAL-IIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTS 423 (680)
Q Consensus 351 --~~~F~~----fm~~LL~lf~~d~~lLe~rg~~-IIrqLc~~L~~e~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTa 423 (680)
..-++. ..-..++.|..... |.++ |.-+.|+.+.+ ++..|+-..+.+|..+|-..
T Consensus 286 H~~AiL~AG~l~a~LsylDFFSi~aQ----R~AlaiaaN~Cksi~s--------------d~f~~v~ealPlL~~lLs~~ 347 (1051)
T KOG0168|consen 286 HPKAILQAGALSAVLSYLDFFSIHAQ----RVALAIAANCCKSIRS--------------DEFHFVMEALPLLTPLLSYQ 347 (1051)
T ss_pred ccHHHHhcccHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCC--------------ccchHHHHHHHHHHHHHhhc
Confidence 111111 11223444554433 4444 88999999998 66777777777776665222
Q ss_pred HHHHHHHHHHhhccCCcchHHHHHHHHHHhccChhHHHHHHHHhhhhHHHHHHHHHHhhcCcchhhHHhHHHHHHh----
Q 005727 424 SELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIRL---- 499 (680)
Q Consensus 424 ~EL~~lR~~L~~~l~~~~~~~lF~~L~~~w~~n~v~~~slcll~~~Y~~a~~ll~~~~~~~~~~~~l~qid~LVqL---- 499 (680)
. ... -. -..++||=++.++.|--+.++.+... +.+.++-+|+-+
T Consensus 348 D-----------------~k~-ie----------s~~ic~~ri~d~f~h~~~kLdql~s~----dLi~~~~qLlsvt~t~ 395 (1051)
T KOG0168|consen 348 D-----------------KKP-IE----------SVCICLTRIADGFQHGPDKLDQLCSH----DLITNIQQLLSVTPTI 395 (1051)
T ss_pred c-----------------chh-HH----------HHHHHHHHHHHhcccChHHHHHHhch----hHHHHHHHHHhcCccc
Confidence 1 111 11 23456666777888888888877744 345555555543
Q ss_pred hccchh-HHHHHHhcCCCCCchHHHHHH
Q 005727 500 LETPIF-AYLRLQLLEPGRYTWLLKALY 526 (680)
Q Consensus 500 lEsPif-~~lRlqLLe~~~~~~l~k~l~ 526 (680)
++.+.| .-+|+-.+=....|-++++||
T Consensus 396 Ls~~~~~~vIrmls~msS~~pl~~~tl~ 423 (1051)
T KOG0168|consen 396 LSNGTYTGVIRMLSLMSSGSPLLFRTLL 423 (1051)
T ss_pred ccccchhHHHHHHHHHccCChHHHHHHH
Confidence 577888 556777777777899999988
No 146
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=94.85 E-value=0.2 Score=49.87 Aligned_cols=139 Identities=20% Similarity=0.263 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHhhcC-CchhhhhchHHHHHHH------------HHhcCCCChhHHHHHHHHHHHHHHHhhcC------
Q 005727 129 YVRQFLVGWITVLDSV-PDIDMLGFLPDFLDGL------------FNMLSDSSHEIRQQADSALWEFLQEIKNS------ 189 (680)
Q Consensus 129 ~vR~~avswI~~L~si-p~~~Li~~Lp~~L~~L------------f~lLsD~~~dVR~~a~~~L~~fL~ei~~~------ 189 (680)
++|+.++.++..+.+. ++..+..|.+.|+|.- --++.||++.||.+|.+++..+++..+.-
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 4899999999999887 8889999999999865 24679999999999999999999876531
Q ss_pred ---CCCC-------hHHHH----HHHHHhcCCC-CHHHHHHHHHHHHHHHHhcC-ccc-ccchHhHHHHHhhhhcCCchh
Q 005727 190 ---PSVD-------YGRMA----EILVQRAASP-DEFTRLTAITWINEFVKLGG-DQL-VPYYADILGAILPCISDKEEK 252 (680)
Q Consensus 190 ---~~~d-------~~~II----~iLl~~~~s~-d~~irl~Al~WL~e~~~l~~-~~l-~pfLp~LLp~LL~~Lsds~~e 252 (680)
+... +..++ ..|+..++.. +..+-...+.-+..+++..| ..+ ..++++++..+.+.+.+.|.+
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 0111 22222 3334444433 33344445666666666544 122 246889999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 005727 253 IRVVARETNEELRAI 267 (680)
Q Consensus 253 IR~~A~~~n~~Ll~~ 267 (680)
+|..+..+.+.+...
T Consensus 161 v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 161 VRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHHcC
Confidence 999988888765543
No 147
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=94.75 E-value=0.97 Score=48.05 Aligned_cols=171 Identities=18% Similarity=0.298 Sum_probs=110.6
Q ss_pred CHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcC
Q 005727 127 NPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAA 206 (680)
Q Consensus 127 np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~ 206 (680)
++..+...+.|+-. .......+..++|-++++++.++.|.++++|...+.+|..|+..+...
T Consensus 92 ~~~~~~~~l~w~v~-~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~----------------- 153 (282)
T PF10521_consen 92 NPGLASHVLSWIVL-SQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAA----------------- 153 (282)
T ss_pred CCcccHHHHHHHHH-hcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChh-----------------
Confidence 34455567777754 355556678999999999999999999999999999999999765421
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhc--------CCchhHHHHHHHHHHHHHHhccCCCC---CC
Q 005727 207 SPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS--------DKEEKIRVVARETNEELRAIKADPAD---GF 275 (680)
Q Consensus 207 s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Ls--------ds~~eIR~~A~~~n~~Ll~~v~~~~~---~l 275 (680)
. |.. ..-.| ..+-+-+++.+++. ++...+-..|..+.-.+.+...+.+. ..
T Consensus 154 ----~-------~~~--L~~tG-----l~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~ 215 (282)
T PF10521_consen 154 ----E-------WDI--LRRTG-----LFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRST 215 (282)
T ss_pred ----h-------hHH--HHHcC-----hHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchH
Confidence 0 111 00001 11223344444444 22334555566666555554322222 12
Q ss_pred ChHhHHH-HHHHhcCC----CcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCC
Q 005727 276 DVGPILS-IATRQLSS----EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS 333 (680)
Q Consensus 276 dl~~iL~-vL~~~L~~----~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s 333 (680)
.+..++. .+...+.+ +....+...++-+..+.+..+-....|+..++|.+-..+.++.
T Consensus 216 ~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~npf 278 (282)
T PF10521_consen 216 WLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENPF 278 (282)
T ss_pred HHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCC
Confidence 3444442 23333332 2466788888999999999888999999999999999998874
No 148
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=0.34 Score=56.63 Aligned_cols=125 Identities=22% Similarity=0.175 Sum_probs=93.8
Q ss_pred hHHHHHH-HhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHHhhcCCCC
Q 005727 115 FIPLLRE-RMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDS-SHEIRQQADSALWEFLQEIKNSPSV 192 (680)
Q Consensus 115 fIP~L~e-~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~-~~dVR~~a~~~L~~fL~ei~~~~~~ 192 (680)
.|..|+. .+.|.|-.||+.|+..|+.+.... |+-+++...+|+++ |+-||-.|+-+|+-++.. -
T Consensus 555 air~lLh~aVsD~nDDVrRaAVialGFVl~~d--------p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAG------t 620 (929)
T KOG2062|consen 555 AIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD--------PEQLPSTVSLLSESYNPHVRYGAAMALGIACAG------T 620 (929)
T ss_pred hHHHhhcccccccchHHHHHHHHHheeeEecC--------hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcC------C
Confidence 3444444 478999999999999999665443 33445566688885 899999999999988853 3
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhH
Q 005727 193 DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKI 253 (680)
Q Consensus 193 d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eI 253 (680)
....-|+.|-.-+.++..+||..|+-.+..+.--..+.+.|-...+-..+.+-+.|.+++.
T Consensus 621 G~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 621 GLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHEDG 681 (929)
T ss_pred CcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhHH
Confidence 4456666666667788899999999888766555566778888888888888888877653
No 149
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=7.8 Score=41.90 Aligned_cols=313 Identities=15% Similarity=0.189 Sum_probs=167.9
Q ss_pred hhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhcc----chhh-hHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHh
Q 005727 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRG----DFII-FFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIV 104 (680)
Q Consensus 31 ~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~----~il~-~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv 104 (680)
+...|-+-.++..+|..|.-.||..+.-|...|.. +++. -=++|++.+..++...|-+|.++| +.+.++..---
T Consensus 81 pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpa 160 (524)
T KOG4413|consen 81 PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPA 160 (524)
T ss_pred hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHH
Confidence 34456677889999999999999988888776652 3332 235888888888999999999999 66666432000
Q ss_pred hccccccHhhhHHHHHHHh-cCCCHHHHHHHHHHHHHhhcCCchhhhhc-hHHHHHHHHHhcCC-CChhHHHHHHHHHHH
Q 005727 105 TESDQFSIEEFIPLLRERM-NVLNPYVRQFLVGWITVLDSVPDIDMLGF-LPDFLDGLFNMLSD-SSHEIRQQADSALWE 181 (680)
Q Consensus 105 ~es~~f~L~~fIP~L~e~i-~~~np~vR~~avswI~~L~sip~~~Li~~-Lp~~L~~Lf~lLsD-~~~dVR~~a~~~L~~ 181 (680)
.-..-|.-+.+=|.=...+ ...|.-+|.-..+.|-.+-++.+...... -..+++.|..=+.. .+.-||..+.+...+
T Consensus 161 aleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 161 ALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred HHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 0000011111111111111 12455678888888888888877544332 12344444443433 344466554444443
Q ss_pred HHHHhhcC-CCCChHHHHHHHHHhc--CCCCHHHHHHHHHHHHHH------HHhcCcccccchHhHHHHHhhhhcCCchh
Q 005727 182 FLQEIKNS-PSVDYGRMAEILVQRA--ASPDEFTRLTAITWINEF------VKLGGDQLVPYYADILGAILPCISDKEEK 252 (680)
Q Consensus 182 fL~ei~~~-~~~d~~~II~iLl~~~--~s~d~~irl~Al~WL~e~------~~l~~~~l~pfLp~LLp~LL~~Lsds~~e 252 (680)
+.. .... ..+.-..+|..+-+-+ .+++|.-+..++--.+.| .++.++....-+|-.+...+.++.-++++
T Consensus 241 Lae-teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpd 319 (524)
T KOG4413|consen 241 LAE-TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPD 319 (524)
T ss_pred HHH-HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCch
Confidence 332 1111 0112234444443333 244666666555433333 23455666666788888889888888999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCh------HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh---ChhhHhh------h
Q 005727 253 IRVVARETNEELRAIKADPADGFDV------GPILSIATRQLSSEWEATRIEALHWISTLLNR---HRTEVLH------F 317 (680)
Q Consensus 253 IR~~A~~~n~~Ll~~v~~~~~~ldl------~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~---~p~~~~~------~ 317 (680)
..++|..+.+.+ +++.++.|+ +..=.++...+......-.+++++.|-.++.. -|+.+.. .
T Consensus 320 aieaAiDalGil----GSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerl 395 (524)
T KOG4413|consen 320 AIEAAIDALGIL----GSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERL 395 (524)
T ss_pred HHHHHHHHHHhc----cCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHH
Confidence 889988887632 111111111 12222333333222222344444444444332 2332222 1
Q ss_pred hHHHH------------HHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005727 318 LNDIF------------DTLLKALSDPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 318 l~~l~------------p~LL~~LsD~s~eV~~~al~lLa~Is 348 (680)
-..+| ...+..++.|.+|++-.+++++-.|.
T Consensus 396 rclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAia 438 (524)
T KOG4413|consen 396 RCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIA 438 (524)
T ss_pred HHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHH
Confidence 11111 13345677889999998888877777
No 150
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=94.66 E-value=1.4 Score=51.11 Aligned_cols=156 Identities=14% Similarity=0.090 Sum_probs=110.4
Q ss_pred hhhhhhhHHHHhhccC-CCCHHHHHHHHHHHHHHHHh---hccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHH
Q 005727 27 ETILQQIVPPVLNSFS-DQDSRVRYYACEALYNIAKV---VRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVK 101 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~-D~d~rVR~~A~eaL~nI~kv---~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllk 101 (680)
++.++..+..++.|.. -.|..+|.+||+++-+.+.- .+.+ ..-+++.+.|.++..||+..|+..+ .++-.++-
T Consensus 371 k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg--~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVm 448 (678)
T KOG1293|consen 371 KEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG--LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVM 448 (678)
T ss_pred HHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC--CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHh
Confidence 3345556666666663 67889999999998876533 3333 2346889999999999999999888 44555433
Q ss_pred HHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhh--hhchHHHHHHHHHhcCCCChhHHHHHHHHH
Q 005727 102 DIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM--LGFLPDFLDGLFNMLSDSSHEIRQQADSAL 179 (680)
Q Consensus 102 div~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~L--i~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L 179 (680)
+...-...|--.-+|..+.+.+.+.++.+|+..+-.++.+.=..+... ..+=.-.-.++..+.+|++.+|.+.+-++|
T Consensus 449 efs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqll 528 (678)
T KOG1293|consen 449 EFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLL 528 (678)
T ss_pred hcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 333222344445689999999999999999999888887655444332 223333444556677999999999998888
Q ss_pred HHHHH
Q 005727 180 WEFLQ 184 (680)
Q Consensus 180 ~~fL~ 184 (680)
..|+.
T Consensus 529 RNl~c 533 (678)
T KOG1293|consen 529 RNLTC 533 (678)
T ss_pred HHhhc
Confidence 88874
No 151
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=3.2 Score=44.71 Aligned_cols=182 Identities=16% Similarity=0.179 Sum_probs=122.6
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcc-----ccc
Q 005727 160 LFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ-----LVP 233 (680)
Q Consensus 160 Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d-~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~-----l~p 233 (680)
+|.+.++++++-...+.+||.++.+... ..+ .++.++.|-.-+..++..++..++.-++.+++-+... +.-
T Consensus 48 ifgfeNenhrekttlcVscLERLfkake---gahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillv 124 (524)
T KOG4413|consen 48 IFGFENENHREKTTLCVSCLERLFKAKE---GAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLV 124 (524)
T ss_pred CcccccccccchhhhHHHHHHHHHhhcc---chhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHH
Confidence 4557777888877888899998887442 334 3678888888888999999999999999888766522 122
Q ss_pred chHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccC-----CCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 005727 234 YYADILGAILPCISDKEEKIRVVARETNEELRAIKAD-----PADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLN 308 (680)
Q Consensus 234 fLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~-----~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~ 308 (680)
-=.+|+|.|+.|+..++.++.++|.+....+...-.. +++..|--...+ .-..-+.-.|..++..++.+..
T Consensus 125 vNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrn----laakcndiaRvRVleLIieifS 200 (524)
T KOG4413|consen 125 VNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRN----LAAKCNDIARVRVLELIIEIFS 200 (524)
T ss_pred hhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhH----HHhhhhhHHHHHHHHHHHHHHh
Confidence 2357899999999999999999988877644221100 011111001111 0112234579999999999999
Q ss_pred hChhhHhh-hhHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHh
Q 005727 309 RHRTEVLH-FLNDIFDTLLKALSDP-SDEVVLLVLEVHACIA 348 (680)
Q Consensus 309 ~~p~~~~~-~l~~l~p~LL~~LsD~-s~eV~~~al~lLa~Is 348 (680)
..|..... --.+++..|..-|.-. +-.|+..++++.-.+.
T Consensus 201 iSpesaneckkSGLldlLeaElkGteDtLVianciElvteLa 242 (524)
T KOG4413|consen 201 ISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELA 242 (524)
T ss_pred cCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHH
Confidence 99887654 3457888888888874 4455666666555444
No 152
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=94.43 E-value=4.9 Score=45.33 Aligned_cols=306 Identities=14% Similarity=0.135 Sum_probs=180.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhcc-chhhhHHHHHHH--------HHH-hhcCCChhHHHHH-HHHHHHHHH---Hhh--
Q 005727 42 SDQDSRVRYYACEALYNIAKVVRG-DFIIFFNQIFDA--------LCK-LSADSDANVQSAA-HLLDRLVKD---IVT-- 105 (680)
Q Consensus 42 ~D~d~rVR~~A~eaL~nI~kv~~~-~il~~f~eIfd~--------L~k-L~aD~d~~Vr~gA-~~Ldrllkd---iv~-- 105 (680)
.....+||..|...+....|.... ..-.||...|+. |.- .+.|+.+..|.-| +.+..++.+ ..+
T Consensus 6 r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a 85 (728)
T KOG4535|consen 6 RSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVA 85 (728)
T ss_pred hhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHH
Confidence 355789999998887776665433 333677666543 111 2578888888777 656665542 222
Q ss_pred cc-c-----cccH--hhhHHH----HHHHh-cCCCHHHHHHHHHHHHHhhcCCchh-h-hhchHHHHHHHHHhcCCCChh
Q 005727 106 ES-D-----QFSI--EEFIPL----LRERM-NVLNPYVRQFLVGWITVLDSVPDID-M-LGFLPDFLDGLFNMLSDSSHE 170 (680)
Q Consensus 106 es-~-----~f~L--~~fIP~----L~e~i-~~~np~vR~~avswI~~L~sip~~~-L-i~~Lp~~L~~Lf~lLsD~~~d 170 (680)
++ + .|++ ..-|.. |...+ ....|.+-..++.++.++.+..+-+ + ..++-+|...+.+++...++.
T Consensus 86 ~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~ 165 (728)
T KOG4535|consen 86 EDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVN 165 (728)
T ss_pred hccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 11 1 1221 111111 11111 2445777888999999998876643 2 357888899999999889999
Q ss_pred HHHHHHHHHHHHHHHhhcCCC----------------------------CChHHHHHH-----------------H----
Q 005727 171 IRQQADSALWEFLQEIKNSPS----------------------------VDYGRMAEI-----------------L---- 201 (680)
Q Consensus 171 VR~~a~~~L~~fL~ei~~~~~----------------------------~d~~~II~i-----------------L---- 201 (680)
||..+-..++.++..-+-.|+ .+-+...+. .
T Consensus 166 v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~ 245 (728)
T KOG4535|consen 166 VRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIV 245 (728)
T ss_pred hhhHHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeee
Confidence 998887777766543221110 000000000 0
Q ss_pred -------------HHhcCCC--CHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHH
Q 005727 202 -------------VQRAASP--DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRA 266 (680)
Q Consensus 202 -------------l~~~~s~--d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~ 266 (680)
..+..+. ...+|++|+.-+..+..--+ -..-|+-++..+|-.+|.+.++++..-+.++..++..
T Consensus 246 ~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~-~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~ 324 (728)
T KOG4535|consen 246 VLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFS-MTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGT 324 (728)
T ss_pred ecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHH
Confidence 0000000 01367776665554433222 2345678889999999999999999888777766543
Q ss_pred hcc-C----C------------------CCCC--------------------------ChH----hHHHHHHHhcC-CCc
Q 005727 267 IKA-D----P------------------ADGF--------------------------DVG----PILSIATRQLS-SEW 292 (680)
Q Consensus 267 ~v~-~----~------------------~~~l--------------------------dl~----~iL~vL~~~L~-~~~ 292 (680)
... + + .... +++ -...+...... +++
T Consensus 325 ~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~ 404 (728)
T KOG4535|consen 325 GLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKN 404 (728)
T ss_pred HHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHH
Confidence 211 1 0 0000 011 11112222222 333
Q ss_pred HHHHHHHHHHHHHHHhh-ChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005727 293 EATRIEALHWISTLLNR-HRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 293 ~~tR~aaL~WL~~L~~~-~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is 348 (680)
..+|.+|++.++.+.-+ +-.....+..+-+..++.+|.|.+-.++.++.|+++.|+
T Consensus 405 ~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnIT 461 (728)
T KOG4535|consen 405 RLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNIT 461 (728)
T ss_pred HHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhH
Confidence 44788888887755433 444556778888899999999999999999999999998
No 153
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=94.35 E-value=1.7 Score=45.47 Aligned_cols=171 Identities=20% Similarity=0.204 Sum_probs=95.4
Q ss_pred hhHHHHhhccCCC--CHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHH-HHhhc-
Q 005727 32 QIVPPVLNSFSDQ--DSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVK-DIVTE- 106 (680)
Q Consensus 32 ~Iv~~VL~~l~D~--d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllk-div~e- 106 (680)
+-+|.+...++|. .+.||.-|++++.++. .+++.+.|.|+..||-..|++.- .++.++=- +.+..
T Consensus 67 ~Av~~l~~vl~desq~pmvRhEAaealga~~----------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~ 136 (289)
T KOG0567|consen 67 DAVPVLVEVLLDESQEPMVRHEAAEALGAIG----------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI 136 (289)
T ss_pred hhhHHHHHHhcccccchHHHHHHHHHHHhhc----------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccc
Confidence 3567777777655 6899999999998763 47788999999999999999854 44554311 22211
Q ss_pred --c-------cccc-HhhhHHHHHHHhcCCC-H-HHHHHHHHHHHHh---------hcCCc-------hhhhhch-----
Q 005727 107 --S-------DQFS-IEEFIPLLRERMNVLN-P-YVRQFLVGWITVL---------DSVPD-------IDMLGFL----- 153 (680)
Q Consensus 107 --s-------~~f~-L~~fIP~L~e~i~~~n-p-~vR~~avswI~~L---------~sip~-------~~Li~~L----- 153 (680)
+ ++.+ -..=++.+++-+.+.+ | +=|+.++-.+.+. ...-. .+....|
T Consensus 137 ~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s 216 (289)
T KOG0567|consen 137 ANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQS 216 (289)
T ss_pred cccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccc
Confidence 1 0111 1112555555555443 2 3444444333322 11000 1112222
Q ss_pred HHHHHHHHHhcCC--CChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005727 154 PDFLDGLFNMLSD--SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINE 222 (680)
Q Consensus 154 p~~L~~Lf~lLsD--~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e 222 (680)
|.=++.|.+.|.| .++-||-+|.++|+.... ++-+++|.....++++-|+..|...+..
T Consensus 217 ~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~~vv~esc~valdm 277 (289)
T KOG0567|consen 217 PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEERVVRESCEVALDM 277 (289)
T ss_pred hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 2224455555555 355677776666664432 4556677777777777777766665543
No 154
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.74 Score=52.48 Aligned_cols=160 Identities=20% Similarity=0.170 Sum_probs=112.1
Q ss_pred HHHHHHHH-HhhcCCChhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHH-HhcCCCHHHHHHHHHHHHHhhcCCchh
Q 005727 72 NQIFDALC-KLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRE-RMNVLNPYVRQFLVGWITVLDSVPDID 148 (680)
Q Consensus 72 ~eIfd~L~-kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e-~i~~~np~vR~~avswI~~L~sip~~~ 148 (680)
.+.+|.+. ++..|.|+-.|-++ ..+.-. .+ +.-.+. .+..++. .+.+.|..||+.||-.++.++--.
T Consensus 514 qe~add~I~ell~d~ds~lRy~G~fs~alA---y~---GTgn~~-vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D--- 583 (926)
T COG5116 514 QEMADDYINELLYDKDSILRYNGVFSLALA---YV---GTGNLG-VVSTLLHYAVSDGNDDVRRAAVIALGFVCCDD--- 583 (926)
T ss_pred HHHHHHHHHHHhcCchHHhhhccHHHHHHH---Hh---cCCcch-hHhhhheeecccCchHHHHHHHHheeeeEecC---
Confidence 45666655 56788888777665 222211 12 111122 3444444 478899999999999999654322
Q ss_pred hhhchHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc
Q 005727 149 MLGFLPDFLDGLFNMLSDS-SHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG 227 (680)
Q Consensus 149 Li~~Lp~~L~~Lf~lLsD~-~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~ 227 (680)
++.+.+...+|+|+ |+-||-.++-+|+-++.. .....-+++|-.-+.+++.+||..|+-..+.+.--+
T Consensus 584 -----~~~lv~tvelLs~shN~hVR~g~AvaLGiacag------~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~ 652 (926)
T COG5116 584 -----RDLLVGTVELLSESHNFHVRAGVAVALGIACAG------TGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQC 652 (926)
T ss_pred -----cchhhHHHHHhhhccchhhhhhhHHHhhhhhcC------CccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhc
Confidence 24456777788885 789999999999988752 234455666666778899999999999998887777
Q ss_pred CcccccchHhHHHHHhhhhcCCchh
Q 005727 228 GDQLVPYYADILGAILPCISDKEEK 252 (680)
Q Consensus 228 ~~~l~pfLp~LLp~LL~~Lsds~~e 252 (680)
.+.+-|-..+|..-...-+.+.+++
T Consensus 653 n~~Lnp~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 653 NPELNPNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred CcccChhHHHHHHHHHHHHhhhhHh
Confidence 7888888888888888888776544
No 155
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=2.1 Score=46.58 Aligned_cols=175 Identities=17% Similarity=0.226 Sum_probs=107.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcC--cccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCC-CCChHhHHH
Q 005727 206 ASPDEFTRLTAITWINEFVKLGG--DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD-GFDVGPILS 282 (680)
Q Consensus 206 ~s~d~~irl~Al~WL~e~~~l~~--~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~-~ldl~~iL~ 282 (680)
.+.+.+-+..|+.=+.++++--. .++.+ +..+.|++. .+.+++.++|..|..+.++..+-.....+ .++.+ .+.
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~-~ggl~~ll~-~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~-~L~ 169 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLIS-LGGLVPLLG-YLENSDAELRELAARVIGTAVQNNPKSQEQVIELG-ALS 169 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhh-ccCHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcc-cHH
Confidence 34456777888877777664321 12222 233444444 88899999999999888754332110000 01111 344
Q ss_pred HHHHhcC-CCcHHHHHHHHHHHHHHHhhChhhHhhhhH--HHHHHHHHhcCCCCHHH--HHHHHHHHHHHhhc-------
Q 005727 283 IATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHFLN--DIFDTLLKALSDPSDEV--VLLVLEVHACIAKD------- 350 (680)
Q Consensus 283 vL~~~L~-~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~--~l~p~LL~~LsD~s~eV--~~~al~lLa~Is~~------- 350 (680)
.|...+. ++...+|..||-.++.+.++.+.+...++. + +-.|.+.|.+++.+| +.+++.+++.+.+.
T Consensus 170 ~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~ 248 (342)
T KOG2160|consen 170 KLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDI 248 (342)
T ss_pred HHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhH
Confidence 5555554 445668899999999999999988776533 3 567888888865555 55888888887732
Q ss_pred --cchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcChh
Q 005727 351 --LQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAE 390 (680)
Q Consensus 351 --~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~e 390 (680)
..-|...+.++..-...+- .+..++.++..+.-.
T Consensus 249 ~~~~~f~~~~~~l~~~l~~~~------~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 249 ASSLGFQRVLENLISSLDFEV------NEAALTALLSLLSEL 284 (342)
T ss_pred HHHhhhhHHHHHHhhccchhh------hHHHHHHHHHHHHHH
Confidence 2235555555555444332 255666666666543
No 156
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.11 E-value=0.88 Score=48.55 Aligned_cols=125 Identities=21% Similarity=0.247 Sum_probs=95.3
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc-----c
Q 005727 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKD-----L 351 (680)
Q Consensus 277 l~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~-----~ 351 (680)
-+..+.-....|.+++|+.+..+|.-+.-+.+-.++.+.+.+.+++.++++.++.+...|-..+|.+++.|.+. +
T Consensus 86 p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 86 PEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777788899999999999999999999999999999999999999999999999999999999999842 2
Q ss_pred chHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcChhhHHHHHHHhhc
Q 005727 352 QHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTILE 401 (680)
Q Consensus 352 ~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~e~Iy~~La~iL~ 401 (680)
+.++..+..|+..=..|++.+-+-++-....+-....|.++-+.+..++.
T Consensus 166 ~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~~ 215 (334)
T KOG2933|consen 166 QELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPILQ 215 (334)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHHh
Confidence 34555555555555555555544445555555555555566555555543
No 157
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.03 E-value=24 Score=44.95 Aligned_cols=199 Identities=18% Similarity=0.117 Sum_probs=137.3
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCC
Q 005727 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS 191 (680)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~ 191 (680)
|...||.|..-+...+..+|.-|++.++.+-.-++..+..-.|.++..-+.-++|-+.+||-++-++...++.. +
T Consensus 257 l~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~-----~ 331 (1266)
T KOG1525|consen 257 LLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN-----N 331 (1266)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc-----C
Confidence 55689999999999999999999999999999888877777888888888899999999999887777766642 2
Q ss_pred CCh-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHh-c-
Q 005727 192 VDY-GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAI-K- 268 (680)
Q Consensus 192 ~d~-~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~-v- 268 (680)
++. ......+.-+..+.|+.+|.....-+.. +.+...+ ..|.|.++..+..-+-|....||..|.+....+.+- .
T Consensus 332 ~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~-~~v~~~~-l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~ 409 (1266)
T KOG1525|consen 332 PSIAKASTILLALRERDLDEDVRVRTQVVIVA-CDVMKFK-LVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYC 409 (1266)
T ss_pred chhhhHHHHHHHHHhhcCChhhhheeeEEEEE-eehhHhh-hhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333 2333344445566777666433221110 0111111 345666888888888899999999998887777662 1
Q ss_pred -cCCC---------------------CCCChHhHHH-HHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhh
Q 005727 269 -ADPA---------------------DGFDVGPILS-IATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF 317 (680)
Q Consensus 269 -~~~~---------------------~~ldl~~iL~-vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~ 317 (680)
...+ ..+|...+++ ++.+.|......++.+.-.|...++..+...+..+
T Consensus 410 ~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf 481 (1266)
T KOG1525|consen 410 LRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAF 481 (1266)
T ss_pred hhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHH
Confidence 1100 0123445554 56777777777778888889988888877655544
No 158
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.89 E-value=18 Score=42.89 Aligned_cols=217 Identities=16% Similarity=0.201 Sum_probs=119.9
Q ss_pred CCCHHHHHH-HHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 005727 125 VLNPYVRQF-LVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQ 203 (680)
Q Consensus 125 ~~np~vR~~-avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~ 203 (680)
+..+.+|+. |+..+..+-+.|+ +-...+..+.+..+|.|.+-.|-.++..++..+.+........-++.-+
T Consensus 159 ~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~av----- 230 (938)
T KOG1077|consen 159 SSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAV----- 230 (938)
T ss_pred cchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHH-----
Confidence 344567765 4555666666665 3445577778888999998888888877777666533221111122222
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhcCcccc---------cchH-hHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCC
Q 005727 204 RAASPDEFTRLTAITWINEFVKLGGDQLV---------PYYA-DILGAILPCISDKEEKIRVVARETNEELRAIKADPAD 273 (680)
Q Consensus 204 ~~~s~d~~irl~Al~WL~e~~~l~~~~l~---------pfLp-~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~ 273 (680)
.-+..++...+.++. ||+. +++..+.-+=.-+++..|..-.++.+.++....++..
T Consensus 231 --------------s~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~ 296 (938)
T KOG1077|consen 231 --------------SRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPK 296 (938)
T ss_pred --------------HHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCcc
Confidence 222222222222221 2222 2222222221122344444444444443333222111
Q ss_pred ----------------------CCC-----hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC--hhhHhhhhHHHHHH
Q 005727 274 ----------------------GFD-----VGPILSIATRQLSSEWEATRIEALHWISTLLNRH--RTEVLHFLNDIFDT 324 (680)
Q Consensus 274 ----------------------~ld-----l~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~--p~~~~~~l~~l~p~ 324 (680)
.+| +..-++.|.+.+.+...-.|.-|++-+..++..- .+.+.-| ...
T Consensus 297 ~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h----~d~ 372 (938)
T KOG1077|consen 297 SKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH----QDT 372 (938)
T ss_pred ccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH----HHH
Confidence 011 2334455666666666667888887777666552 2233334 445
Q ss_pred HHHhcC-CCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhccc
Q 005727 325 LLKALS-DPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVD 368 (680)
Q Consensus 325 LL~~Ls-D~s~eV~~~al~lLa~Is~~~~~F~~fm~~LL~lf~~d 368 (680)
++.+|+ +++-.||++++.+|-.+|+ .+.=+.++.++|+.+.+-
T Consensus 373 Ii~sLkterDvSirrravDLLY~mcD-~~Nak~IV~elLqYL~tA 416 (938)
T KOG1077|consen 373 IINSLKTERDVSIRRRAVDLLYAMCD-VSNAKQIVAELLQYLETA 416 (938)
T ss_pred HHHHhccccchHHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHhhc
Confidence 667777 7788899999999999993 556788999999988764
No 159
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.74 E-value=0.7 Score=50.83 Aligned_cols=129 Identities=17% Similarity=0.284 Sum_probs=91.8
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccccHh
Q 005727 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIE 113 (680)
Q Consensus 35 ~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L~ 113 (680)
..++.-+.+.+..||.-|.+-+....+....+...+..+++..+.-++.|.|..||.+. .+++.++--...+.-..-..
T Consensus 61 keLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~ 140 (393)
T KOG2149|consen 61 KELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVS 140 (393)
T ss_pred HHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHH
Confidence 44566779999999998877666665543334445778899999999999999999998 77776544222222122256
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHh
Q 005727 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNM 163 (680)
Q Consensus 114 ~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~l 163 (680)
.++|-+...|....|++|..+...+.++..-.+..+..+...+++..+.+
T Consensus 141 l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~~d~ 190 (393)
T KOG2149|consen 141 LLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENFKDV 190 (393)
T ss_pred HHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 67888888888999999999999999887655555555555555544433
No 160
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=93.73 E-value=0.28 Score=48.75 Aligned_cols=122 Identities=14% Similarity=0.132 Sum_probs=85.5
Q ss_pred cccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-CchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH---
Q 005727 109 QFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSV-PDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ--- 184 (680)
Q Consensus 109 ~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~si-p~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~--- 184 (680)
..+...++|.+.+.+...+.--|-.|..-+.-+... .+..+++.+|.+..+|.+.|+-.+++|...+-++|..++.
T Consensus 33 ~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 33 KLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 456678999999999976655566677666666555 7777999999999999999999999999999999998843
Q ss_pred HhhcCCCCChHHHHHHHH----HhcCCCC-------HHHHHHHHHHHHHHHHhcCcc
Q 005727 185 EIKNSPSVDYGRMAEILV----QRAASPD-------EFTRLTAITWINEFVKLGGDQ 230 (680)
Q Consensus 185 ei~~~~~~d~~~II~iLl----~~~~s~d-------~~irl~Al~WL~e~~~l~~~~ 230 (680)
.++..-.+++..+.+++- .+.+..| ..++...-+.+..+-+-+|++
T Consensus 113 ~vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 113 MVGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 333222346777777776 2222221 234444455666666666654
No 161
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.62 E-value=13 Score=40.61 Aligned_cols=228 Identities=16% Similarity=0.202 Sum_probs=129.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhcCC-ch------h-hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHh
Q 005727 115 FIPLLRERMNVLNPYVRQFLVGWITVLDSVP-DI------D-MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (680)
Q Consensus 115 fIP~L~e~i~~~np~vR~~avswI~~L~sip-~~------~-Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei 186 (680)
+++.|...+..-+.++|+-++...+.+.... +. + +..+-|++++.|..--.+++ +- --.|.+++++
T Consensus 77 ll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~d--ia----l~~g~mlRec 150 (335)
T PF08569_consen 77 LLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPD--IA----LNCGDMLREC 150 (335)
T ss_dssp HHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTT--TH----HHHHHHHHHH
T ss_pred HHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCcc--cc----chHHHHHHHH
Confidence 6888888999999999999999988775432 11 1 22333788887777666444 21 2234455554
Q ss_pred hcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHH
Q 005727 187 KNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRA 266 (680)
Q Consensus 187 ~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~ 266 (680)
-+ ++.+..+++.. +.+ --++..+..+.-||-.-|-.+..+++.
T Consensus 151 ~k-----~e~l~~~iL~~------------------------~~f--------~~ff~~~~~~~Fdiasdaf~t~~~llt 193 (335)
T PF08569_consen 151 IK-----HESLAKIILYS------------------------ECF--------WKFFKYVQLPNFDIASDAFSTFKELLT 193 (335)
T ss_dssp TT-----SHHHHHHHHTS------------------------GGG--------GGHHHHTTSSSHHHHHHHHHHHHHHHH
T ss_pred Hh-----hHHHHHHHhCc------------------------HHH--------HHHHHHhcCCccHhHHHHHHHHHHHHh
Confidence 22 23333333321 011 112333444455554444333333221
Q ss_pred hccCC-CC--CCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCh--hhHhhhh--HHHHHHHHHhcCCCCHHHHHH
Q 005727 267 IKADP-AD--GFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHR--TEVLHFL--NDIFDTLLKALSDPSDEVVLL 339 (680)
Q Consensus 267 ~v~~~-~~--~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p--~~~~~~l--~~l~p~LL~~LsD~s~eV~~~ 339 (680)
.-... ++ .-+|+.+.......+.+++-.||..+++.||.+..--. .-|..|. ++-+..++..|+|++..|+-.
T Consensus 194 ~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~e 273 (335)
T PF08569_consen 194 RHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFE 273 (335)
T ss_dssp SSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHH
Confidence 10000 00 13588899999999999999999999999998875433 3455664 467889999999999999989
Q ss_pred HHHHHHHHhhcc---chH-------HHHHHHHHHhhc----ccchhHHhHHHHHHHHHHhh
Q 005727 340 VLEVHACIAKDL---QHF-------RQLVVFLVHNFR----VDNSLLEKRGALIIRRLCVL 386 (680)
Q Consensus 340 al~lLa~Is~~~---~~F-------~~fm~~LL~lf~----~d~~lLe~rg~~IIrqLc~~ 386 (680)
|..+..-+..|. +-. +.-+...+.-|. +|+...++| +++|+++..+
T Consensus 274 AFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~f~~~~~~D~qf~~EK-~~li~~i~~L 333 (335)
T PF08569_consen 274 AFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKDFHTDRTDDEQFEDEK-AYLIKQIESL 333 (335)
T ss_dssp HHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHTTTTT--S-CHHHHHH-HHHHHHHHT-
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHhCCCCCCccccHHHHH-HHHHHHHHhC
Confidence 988877666321 111 112223333343 345666776 7888887643
No 162
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=1.4 Score=51.70 Aligned_cols=175 Identities=22% Similarity=0.215 Sum_probs=104.7
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHh-hcCCChhHHHHH-HHHHHHHHHHhhccccccH
Q 005727 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKL-SADSDANVQSAA-HLLDRLVKDIVTESDQFSI 112 (680)
Q Consensus 35 ~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL-~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L 112 (680)
+-|-..+.|+|+-.||...-++. .+.+..|. +.++..|... ++|++-+||.+| .+|. .|.-.+.-.+
T Consensus 522 ~lI~el~~dkdpilR~~Gm~t~a-lAy~GTgn-----nkair~lLh~aVsD~nDDVrRaAVialG-----FVl~~dp~~~ 590 (929)
T KOG2062|consen 522 PLIKELLRDKDPILRYGGMYTLA-LAYVGTGN-----NKAIRRLLHVAVSDVNDDVRRAAVIALG-----FVLFRDPEQL 590 (929)
T ss_pred HHHHHHhcCCchhhhhhhHHHHH-HHHhccCc-----hhhHHHhhcccccccchHHHHHHHHHhe-----eeEecChhhc
Confidence 33445568999999998754431 23333333 3345555544 799999999999 4433 2221221123
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCC
Q 005727 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV 192 (680)
Q Consensus 113 ~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~ 192 (680)
+..+.+|.| +-||+||+.+.-.++..+.-.+.. +-+.-|=.|..|+..=||+.|+-++.-.+--.-....+
T Consensus 591 ~s~V~lLse---s~N~HVRyGaA~ALGIaCAGtG~~------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~p 661 (929)
T KOG2062|consen 591 PSTVSLLSE---SYNPHVRYGAAMALGIACAGTGLK------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCP 661 (929)
T ss_pred hHHHHHHhh---hcChhhhhhHHHHHhhhhcCCCcH------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCc
Confidence 334444444 568999999999999887766632 22233344667999999999876666544322222234
Q ss_pred ChHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHHHhcCcc
Q 005727 193 DYGRMAEILVQRAASPDEF--TRLTAITWINEFVKLGGDQ 230 (680)
Q Consensus 193 d~~~II~iLl~~~~s~d~~--irl~Al~WL~e~~~l~~~~ 230 (680)
.+..+.+-+..-+.+.++. ++..|+-.=+ +++.+|..
T Consensus 662 kv~~frk~l~kvI~dKhEd~~aK~GAilAqG-ildaGGrN 700 (929)
T KOG2062|consen 662 KVNGFRKQLEKVINDKHEDGMAKFGAILAQG-ILDAGGRN 700 (929)
T ss_pred hHHHHHHHHHHHhhhhhhHHHHHHHHHHHhh-hhhcCCce
Confidence 5677777777766666554 4555554333 44555544
No 163
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=93.56 E-value=7.4 Score=42.00 Aligned_cols=178 Identities=13% Similarity=0.109 Sum_probs=117.6
Q ss_pred HHHHHHHHhhcCC-ChhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHh-hcCCchhh
Q 005727 73 QIFDALCKLSADS-DANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVL-DSVPDIDM 149 (680)
Q Consensus 73 eIfd~L~kL~aD~-d~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L-~sip~~~L 149 (680)
.|...|.+++.-. ...|-.-| +..+.+++-+..+.=..++.-+.|-|+..+....-.||-..+..+... ...++ .+
T Consensus 54 ~v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L 132 (307)
T PF04118_consen 54 QVSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-AL 132 (307)
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HH
Confidence 4444455444322 22444444 555555554544433456777889999999888899999999999855 46666 99
Q ss_pred hhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC-
Q 005727 150 LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG- 228 (680)
Q Consensus 150 i~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~- 228 (680)
.+.++.++-+|+--+.|.+.|+-..+.++++.+-..+... .-+..+-..++ ..+.+|..|+.|+..-..-..
T Consensus 133 ~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~--~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~ 205 (307)
T PF04118_consen 133 RPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDK--YFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQN 205 (307)
T ss_pred HHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChh--HHHHHHHHHHh-----cCcchhHHHHHHHHHhCCcccc
Confidence 9999999999999999999999999999999887655432 11233333333 467789999999975322111
Q ss_pred ----------c-ccccchHhHHHHHhhhhcCCchhHHHHHH
Q 005727 229 ----------D-QLVPYYADILGAILPCISDKEEKIRVVAR 258 (680)
Q Consensus 229 ----------~-~l~pfLp~LLp~LL~~Lsds~~eIR~~A~ 258 (680)
. .+.|--.-++.++..++.|++.-|+..+-
T Consensus 206 ~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~L 246 (307)
T PF04118_consen 206 DELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFL 246 (307)
T ss_pred cccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHH
Confidence 1 12223334566788888887665554443
No 164
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=93.43 E-value=0.55 Score=43.84 Aligned_cols=127 Identities=17% Similarity=0.249 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhh-ccc--------------ccc
Q 005727 47 RVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVT-ESD--------------QFS 111 (680)
Q Consensus 47 rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkdiv~-es~--------------~f~ 111 (680)
-||...|.++..|++. +....|++.++.+.+++..+...+..+-..|..+.+++.. ... ...
T Consensus 3 ~i~~kl~~~l~~i~~~---~~P~~Wp~~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~ 79 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKR---DWPQQWPDFLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRSN 79 (148)
T ss_dssp HHHHHHHHHHHHHHHH---HTTTTSTTHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH---HChhhCchHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHH
Confidence 4677778888777653 2234578888888888877544444433778888888874 110 112
Q ss_pred HhhhHHHHHHHhcCCC----HHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHH
Q 005727 112 IEEFIPLLRERMNVLN----PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSAL 179 (680)
Q Consensus 112 L~~fIP~L~e~i~~~n----p~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L 179 (680)
.+.++..+...+.... +.+...++++++...+..+.+.+.. ..+++.++++++++ +.|.+|++||
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l~~~--~~~~~A~~cl 148 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLLQSP--ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHTTSC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHcCCH--HHHHHHHHhC
Confidence 3444555555444322 7888999999998877666555444 45999999999554 4588888875
No 165
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.41 E-value=5.7 Score=46.65 Aligned_cols=161 Identities=19% Similarity=0.253 Sum_probs=90.7
Q ss_pred HHHHHHHHhcCC----CChhHHHHHHHHHHHHHHHhhcCC----------CCChHHHHHHHHHhcC----CCCHHHHHHH
Q 005727 155 DFLDGLFNMLSD----SSHEIRQQADSALWEFLQEIKNSP----------SVDYGRMAEILVQRAA----SPDEFTRLTA 216 (680)
Q Consensus 155 ~~L~~Lf~lLsD----~~~dVR~~a~~~L~~fL~ei~~~~----------~~d~~~II~iLl~~~~----s~d~~irl~A 216 (680)
++++.++.++.. .++.+|..|.-+++.++....... ....+++++.+...+. ..++..+..+
T Consensus 431 e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 510 (618)
T PF01347_consen 431 ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVY 510 (618)
T ss_dssp HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHH
Confidence 344555555543 567899998888998888776541 1224455555555444 5566777777
Q ss_pred HHHHHHHHHhcCcccccchHhHHHHHhhhhcCC---chhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCC--C
Q 005727 217 ITWINEFVKLGGDQLVPYYADILGAILPCISDK---EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS--E 291 (680)
Q Consensus 217 l~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds---~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~--~ 291 (680)
+..|+.+ + .|..++.+.+.+.+. ...+|.+|..+...+ .. ..-..+.+++...+.+ +
T Consensus 511 LkaLgN~---g-------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~---~~-----~~~~~v~~~l~~I~~n~~e 572 (618)
T PF01347_consen 511 LKALGNL---G-------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRL---AK-----HCPEKVREILLPIFMNTTE 572 (618)
T ss_dssp HHHHHHH---T--------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTG---GG-----T-HHHHHHHHHHHHH-TTS
T ss_pred HHHhhcc---C-------CchhhHHHHhHhhhccccchHHHHHHHHHHHHH---hh-----cCcHHHHHHHHHHhcCCCC
Confidence 8777754 1 467888888888766 567888877765522 11 1124677777777754 4
Q ss_pred cHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhc-CCCCHHHHHHHHH
Q 005727 292 WEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKAL-SDPSDEVVLLVLE 342 (680)
Q Consensus 292 ~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~L-sD~s~eV~~~al~ 342 (680)
+.++|++|...|. +..|.. ..+-.+...+ .|++.+|.+-+..
T Consensus 573 ~~EvRiaA~~~lm---~~~P~~------~~l~~i~~~l~~E~~~QV~sfv~S 615 (618)
T PF01347_consen 573 DPEVRIAAYLILM---RCNPSP------SVLQRIAQSLWNEPSNQVASFVYS 615 (618)
T ss_dssp -HHHHHHHHHHHH---HT---H------HHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred ChhHHHHHHHHHH---hcCCCH------HHHHHHHHHHhhCchHHHHHHHHH
Confidence 5669999875443 222321 2223333333 4667777764443
No 166
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.32 E-value=22 Score=42.57 Aligned_cols=334 Identities=16% Similarity=0.156 Sum_probs=178.5
Q ss_pred hhhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchh-hhHHHH-----------------HHHHHHhhcCCC-
Q 005727 26 SETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFI-IFFNQI-----------------FDALCKLSADSD- 86 (680)
Q Consensus 26 ~~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il-~~f~eI-----------------fd~L~kL~aD~d- 86 (680)
.+.+.+.+...|-.+- -..=|+.|+.+|...++..|.++- ..++.+ +|.++.++...|
T Consensus 20 ~aETI~kLcDRvessT---L~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 20 AAETIEKLCDRVESST---LLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred HHhHHHHHHHHHhhcc---chhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 3667777777765442 233477888888777766554321 233333 444444332111
Q ss_pred hhHHHH---HHHHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCch---hhhhchHHHHHHH
Q 005727 87 ANVQSA---AHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI---DMLGFLPDFLDGL 160 (680)
Q Consensus 87 ~~Vr~g---A~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~---~Li~~Lp~~L~~L 160 (680)
+.|-.- +.-+.--+-|+.... ..+|..|...+..-|..||.++|..+..+.+.-|. +.+-..|.=+..|
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~-----qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~l 171 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKN-----QDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKL 171 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcC-----chhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHH
Confidence 111100 111111111111111 34799999999999999999999999988887664 4566788888889
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHHhhcCC-CCChHHHHHHHHHhcCCC---C-HHHHHHHHHHHHHHHHhc--Cccc--
Q 005727 161 FNMLSDSSHEIRQQADSALWEFLQEIKNSP-SVDYGRMAEILVQRAASP---D-EFTRLTAITWINEFVKLG--GDQL-- 231 (680)
Q Consensus 161 f~lLsD~~~dVR~~a~~~L~~fL~ei~~~~-~~d~~~II~iLl~~~~s~---d-~~irl~Al~WL~e~~~l~--~~~l-- 231 (680)
..++.|+..-||.++.-.|..+.+.-.... -+.|+++.+-|..-+... | --|...|+..|..+++-. ...+
T Consensus 172 mdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~Fr 251 (970)
T KOG0946|consen 172 MDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFR 251 (970)
T ss_pred HHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHh
Confidence 999999999999998777666665321110 023555555555544322 2 246677888888776532 2222
Q ss_pred -ccchHhHHHHHhh-hhcCCchhHHHHHHHH-H-HHHH---HhccCCCCC----------CChHhHHHHHHHhcCCCcHH
Q 005727 232 -VPYYADILGAILP-CISDKEEKIRVVARET-N-EELR---AIKADPADG----------FDVGPILSIATRQLSSEWEA 294 (680)
Q Consensus 232 -~pfLp~LLp~LL~-~Lsds~~eIR~~A~~~-n-~~Ll---~~v~~~~~~----------ldl~~iL~vL~~~L~~~~~~ 294 (680)
-.|+|++...+-- ..+|. +..--.+.++ | ..++ +..-.+++. ++=..++.+|+..+.++..+
T Consensus 252 E~~~i~rL~klL~~f~~~d~-Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp 330 (970)
T KOG0946|consen 252 EGSYIPRLLKLLSVFEFGDG-EVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVP 330 (970)
T ss_pred ccccHHHHHhhcCcccccCc-ccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCc
Confidence 2466665533221 12232 1111111111 1 1112 222222221 22346788888888877433
Q ss_pred --HHHHHHHHHHHHHhhChhh-------HhhhhHH----HHHHHHHhcCCCCHHH-HHHHHHHHHHHh-hccchHHHHHH
Q 005727 295 --TRIEALHWISTLLNRHRTE-------VLHFLND----IFDTLLKALSDPSDEV-VLLVLEVHACIA-KDLQHFRQLVV 359 (680)
Q Consensus 295 --tR~aaL~WL~~L~~~~p~~-------~~~~l~~----l~p~LL~~LsD~s~eV-~~~al~lLa~Is-~~~~~F~~fm~ 359 (680)
++-.++..+..+..++... +.|+.+. ++-.++...+...+-. |-.+..++..+- +|+.-=.+|+.
T Consensus 331 ~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l~ 410 (970)
T KOG0946|consen 331 ADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFLK 410 (970)
T ss_pred HhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 5666666666777776442 2343332 2223333333333333 223334444333 44444456888
Q ss_pred HHHHhhccc
Q 005727 360 FLVHNFRVD 368 (680)
Q Consensus 360 ~LL~lf~~d 368 (680)
.++....+.
T Consensus 411 tllp~~~ns 419 (970)
T KOG0946|consen 411 TLLPSSTNS 419 (970)
T ss_pred HHhhhhccc
Confidence 888777554
No 167
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=24 Score=42.08 Aligned_cols=350 Identities=17% Similarity=0.199 Sum_probs=188.9
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhHH-HHhhcc-----------CCCCHHHHHH------------HHHHHHHHHHhhccc-
Q 005727 12 IVEQFLLYADLFFYSETILQQIVP-PVLNSF-----------SDQDSRVRYY------------ACEALYNIAKVVRGD- 66 (680)
Q Consensus 12 ~~~~~~~~~~~~~~~~~yL~~Iv~-~VL~~l-----------~D~d~rVR~~------------A~eaL~nI~kv~~~~- 66 (680)
.+|+|--.-++.--+++++..|+. -|+.++ .||+.-+|+| |+.....+.+.-|++
T Consensus 325 Fve~cv~~d~tw~l~ePhlq~ii~~vIfPllc~see~eElfEnDp~eyirry~df~d~g~spdlaal~fl~~~~sKrke~ 404 (970)
T COG5656 325 FVELCVDADQTWRLMEPHLQYIISGVIFPLLCLSEEEEELFENDPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKRKEE 404 (970)
T ss_pred HHHHHhhhHhhHhhhccHHHHHHHhhhhhhcCCChhhHHHHhcCHHHHHHHhcchhcCCCChhHHHHHHHHHHhcccchh
Confidence 456666554455667888888884 344443 3666667765 222222333333432
Q ss_pred ----hhhhHHHHHHHHHHhhcCCC---hhHHHHH-HHHHHHHHHHhhccccc--cHhh-hHHHHHHHhcCCCHHHHHHHH
Q 005727 67 ----FIIFFNQIFDALCKLSADSD---ANVQSAA-HLLDRLVKDIVTESDQF--SIEE-FIPLLRERMNVLNPYVRQFLV 135 (680)
Q Consensus 67 ----il~~f~eIfd~L~kL~aD~d---~~Vr~gA-~~Ldrllkdiv~es~~f--~L~~-fIP~L~e~i~~~np~vR~~av 135 (680)
++++...|+..- ..++++ +.-.+|| ..++.+ ++++++...+ -++. +++.+.-.+.++--+.|.-+|
T Consensus 405 TfqgiLsf~~sil~qs--aa~psn~dnarq~egalr~lasi-~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srac 481 (970)
T COG5656 405 TFQGILSFLLSILGQS--AATPSNIDNARQAEGALRLLASI-KSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRAC 481 (970)
T ss_pred hhhhHHHHHHHHHhcc--cCCCCccccHHHHhhHHHHHHHH-HHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHH
Confidence 333333332221 123333 2344566 444444 4476654210 0111 345555566677778899999
Q ss_pred HHHHHhhc-CCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC--CCChHHHHHHHHHhcCCCCHHH
Q 005727 136 GWITVLDS-VPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP--SVDYGRMAEILVQRAASPDEFT 212 (680)
Q Consensus 136 swI~~L~s-ip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~--~~d~~~II~iLl~~~~s~d~~i 212 (680)
..++.+.. .++ -..+-+..++..+++.|++..|+-+|+-++.-|+..-+.++ .-+++.+++-|+.--+.-+-++
T Consensus 482 e~is~~eeDfkd---~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~ 558 (970)
T COG5656 482 EFISTIEEDFKD---NGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDP 558 (970)
T ss_pred HHHHHHHHhccc---chHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchH
Confidence 99998832 222 23466788888999999999999988889998886543322 1256667766665544444333
Q ss_pred HHHHHHHHHHHHHhcCcccccchHhHHHHHhhh----h----cCC------chhHHHHHHHHHHHHHHhccCCCCCCC--
Q 005727 213 RLTAITWINEFVKLGGDQLVPYYADILGAILPC----I----SDK------EEKIRVVARETNEELRAIKADPADGFD-- 276 (680)
Q Consensus 213 rl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~----L----sds------~~eIR~~A~~~n~~Ll~~v~~~~~~ld-- 276 (680)
-.. -+.+|++--++.+.||-|++...+... + ..+ .++..-+|.....++-.++-+-.+..+
T Consensus 559 LS~---vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vL 635 (970)
T COG5656 559 LSM---VMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVL 635 (970)
T ss_pred HHH---HHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 332 344566666788999999888766551 1 111 122222333333333233322111110
Q ss_pred ---hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC---hhhHhhhhHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHh-
Q 005727 277 ---VGPILSIATRQLSSEWEATRIEALHWISTLLNRH---RTEVLHFLNDIFDTLLKALSDPSDEV-VLLVLEVHACIA- 348 (680)
Q Consensus 277 ---l~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~---p~~~~~~l~~l~p~LL~~LsD~s~eV-~~~al~lLa~Is- 348 (680)
.....|++.=.+.++....=..|++. .+++ ..++.|...+++..+.+++.|+...+ ...+.-++..+.
T Consensus 636 k~le~slypvi~Filkn~i~dfy~Ea~di----ldg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfit 711 (970)
T COG5656 636 KYLEVSLYPVISFILKNEISDFYQEALDI----LDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALDNFIT 711 (970)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH----HhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence 12333444445555444433334433 3332 34566888899999999999987522 334444555554
Q ss_pred ------hccchHHHHHHHHHHhh-cccchhHHh
Q 005727 349 ------KDLQHFRQLVVFLVHNF-RVDNSLLEK 374 (680)
Q Consensus 349 ------~~~~~F~~fm~~LL~lf-~~d~~lLe~ 374 (680)
...+.+-+++..+.+.- .++..-++.
T Consensus 712 yG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D 744 (970)
T COG5656 712 YGKTEFMDAGIYGSICSEISKLCLCSEENFLED 744 (970)
T ss_pred hCccccccccchhHHHHHHHHHHHcchhhhHHH
Confidence 13455666666666554 333333444
No 168
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=6.5 Score=49.91 Aligned_cols=219 Identities=12% Similarity=0.120 Sum_probs=133.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCch-hhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCh
Q 005727 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDI-DMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDY 194 (680)
Q Consensus 116 IP~L~e~i~~~np~vR~~avswI~~L~sip~~-~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~ 194 (680)
+..+...+.-.|+.+|.-|+.-+..+.+-.+. .....+|.......++..|.+++||.++...+..++..+++...+++
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~L 122 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFL 122 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44455566678999999998888877664443 34445888888888999999999999999999999999998888899
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh--cCcccccchHhHHHHHhhhhcC----CchhHHHHHHH---------
Q 005727 195 GRMAEILVQRAASPDEFTRLTAITWINEFVKL--GGDQLVPYYADILGAILPCISD----KEEKIRVVARE--------- 259 (680)
Q Consensus 195 ~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l--~~~~l~pfLp~LLp~LL~~Lsd----s~~eIR~~A~~--------- 259 (680)
..++++.+-..-+.+..+...|-.-....-.- -++...-+-|.+.+.+...+.. +-.+.|-.+.+
T Consensus 123 K~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rv 202 (1312)
T KOG0803|consen 123 KSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRV 202 (1312)
T ss_pred HhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHH
Confidence 99999998888887777666554433321110 0111222334444444433221 11111111111
Q ss_pred ---HHHHHHHhccCCCCC--CC-hHh----HH--HHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHH
Q 005727 260 ---TNEELRAIKADPADG--FD-VGP----IL--SIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLK 327 (680)
Q Consensus 260 ---~n~~Ll~~v~~~~~~--ld-l~~----iL--~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~ 327 (680)
+.-.+.......+.. ++ ..+ ++ +..-..+.+....+|.+..+-+..+.+..+.-+.+.-...+...+.
T Consensus 203 i~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~ 282 (1312)
T KOG0803|consen 203 ISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLL 282 (1312)
T ss_pred HHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHH
Confidence 111122222111211 11 111 11 1234455677888999999999999998888855555555554444
Q ss_pred hcCCCCH
Q 005727 328 ALSDPSD 334 (680)
Q Consensus 328 ~LsD~s~ 334 (680)
..-|+.+
T Consensus 283 ~~~~~~d 289 (1312)
T KOG0803|consen 283 GSIDSLD 289 (1312)
T ss_pred ccccccc
Confidence 4455555
No 169
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=93.00 E-value=0.41 Score=47.04 Aligned_cols=95 Identities=13% Similarity=0.246 Sum_probs=77.7
Q ss_pred hhchHHHHHHHHH------------------hcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHH
Q 005727 150 LGFLPDFLDGLFN------------------MLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEF 211 (680)
Q Consensus 150 i~~Lp~~L~~Lf~------------------lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~ 211 (680)
.++++.++|.|+. ---|..-|+|++|=+|+..++..... .+++..+.+.+..-+.+ ++.
T Consensus 4 ~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~--~~~~~~~~~~v~~GL~D-~~D 80 (169)
T PF08623_consen 4 RPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLS--RIDISEFLDRVEAGLKD-EHD 80 (169)
T ss_dssp TTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCS--SS-HHHHHHHHHHTTSS--HH
T ss_pred HHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHhhcCC-cHH
Confidence 4678888888863 33345569999999999999985543 56899999999999998 999
Q ss_pred HHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhc
Q 005727 212 TRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS 247 (680)
Q Consensus 212 irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Ls 247 (680)
|+..+...+..++...|..+.+.+..+++.+-..++
T Consensus 81 Ik~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 81 IKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998888775
No 170
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=92.78 E-value=2.7 Score=44.03 Aligned_cols=165 Identities=19% Similarity=0.182 Sum_probs=95.0
Q ss_pred HHHHHHhcCCC--ChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHH------HHHHHHHHHhcC
Q 005727 157 LDGLFNMLSDS--SHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTA------ITWINEFVKLGG 228 (680)
Q Consensus 157 L~~Lf~lLsD~--~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~A------l~WL~e~~~l~~ 228 (680)
++.|...+.|. .|-||-+|.++|+.+.. +...+++-.-.+++-.+|+.++ ++|.+.+...
T Consensus 69 v~~l~~vl~desq~pmvRhEAaealga~~~----------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~-- 136 (289)
T KOG0567|consen 69 VPVLVEVLLDESQEPMVRHEAAEALGAIGD----------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKI-- 136 (289)
T ss_pred hHHHHHHhcccccchHHHHHHHHHHHhhcc----------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccc--
Confidence 34455566664 46799999999998752 3345555555555555555544 4566544432
Q ss_pred cccccchHhHHHHHhhhhcCCc---hhHHHHHHHHHHHHHHhccCCCCC-CCh--HhHHHHHHHhcCCCcHHHHHHHHHH
Q 005727 229 DQLVPYYADILGAILPCISDKE---EKIRVVARETNEELRAIKADPADG-FDV--GPILSIATRQLSSEWEATRIEALHW 302 (680)
Q Consensus 229 ~~l~pfLp~LLp~LL~~Lsds~---~eIR~~A~~~n~~Ll~~v~~~~~~-ldl--~~iL~vL~~~L~~~~~~tR~aaL~W 302 (680)
..-.||.+ . =|.-.+.. .++|..-.+.+..+..--.. -.+ -|. ++-++++.+.+..++..-|-.+--.
T Consensus 137 ~~~~p~~S-v----dPa~p~~~ssv~~lr~~lld~t~~l~~Ry~a-mF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfV 210 (289)
T KOG0567|consen 137 ANSSPYIS-V----DPAPPANLSSVHELRAELLDETKPLFERYRA-MFYLRNIGTEEAINALIDGLADDSALFRHEVAFV 210 (289)
T ss_pred cccCcccc-C----CCCCccccccHHHHHHHHHhcchhHHHHHhh-hhHhhccCcHHHHHHHHHhcccchHHHHHHHHHH
Confidence 11223322 0 00111111 22332222222211111000 000 012 6778889999988888888888888
Q ss_pred HHHHHhhChhhHhhhhHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhh
Q 005727 303 ISTLLNRHRTEVLHFLNDIFDTLLKALSDP--SDEVVLLVLEVHACIAK 349 (680)
Q Consensus 303 L~~L~~~~p~~~~~~l~~l~p~LL~~LsD~--s~eV~~~al~lLa~Is~ 349 (680)
+|.+-..+ -+|.|.+.|.|. .+.||+.+.+.|+.|++
T Consensus 211 fGQl~s~~----------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~ 249 (289)
T KOG0567|consen 211 FGQLQSPA----------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD 249 (289)
T ss_pred Hhhccchh----------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC
Confidence 88876654 678888888875 58899999999999984
No 171
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=92.71 E-value=27 Score=41.67 Aligned_cols=151 Identities=15% Similarity=0.134 Sum_probs=78.1
Q ss_pred CChHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHh
Q 005727 192 VDYGRMAEILVQRAA----SPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAI 267 (680)
Q Consensus 192 ~d~~~II~iLl~~~~----s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~ 267 (680)
-+++++++.-.+.++ ..++.+--.++.-++.++..-.-.++. =...++.+.+.|. -+++|.+|++|.-. +
T Consensus 185 ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSWIdInLIa-Nd~f~nLLy~fl~--ieelR~aac~cila---i 258 (980)
T KOG2021|consen 185 NDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSWIDINLIA-NDYFLNLLYKFLN--IEELRIAACNCILA---I 258 (980)
T ss_pred hhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhhhhhhhhh-chhHHHHHHHHHh--HHHHHHHHHHHHHH---H
Confidence 467777765544432 235665545554444443332222221 2234555666555 57889888887653 3
Q ss_pred ccCCCCCCChHhHHHHHHHhc-----------CCCcHHHHHHHHH-HH----HHH-----Hhh---ChhhHhhhhHHHHH
Q 005727 268 KADPADGFDVGPILSIATRQL-----------SSEWEATRIEALH-WI----STL-----LNR---HRTEVLHFLNDIFD 323 (680)
Q Consensus 268 v~~~~~~ldl~~iL~vL~~~L-----------~~~~~~tR~aaL~-WL----~~L-----~~~---~p~~~~~~l~~l~p 323 (680)
+...-...|-=++++.|.+.+ .+.+...|.+.|- -. ..+ .+. ...+....+...+|
T Consensus 259 VsKkMkP~dKL~lln~L~q~l~lfg~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vp 338 (980)
T KOG2021|consen 259 VSKKMKPMDKLALLNMLNQTLELFGYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVP 338 (980)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHhhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHH
Confidence 322111122223444442211 1222334555441 00 011 111 22345555667999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHh
Q 005727 324 TLLKALSDPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 324 ~LL~~LsD~s~eV~~~al~lLa~Is 348 (680)
.+++-|+|+.+++-.+....|+.+-
T Consensus 339 yllq~l~~e~ddit~~ifpFlsdyl 363 (980)
T KOG2021|consen 339 YLLQFLNNEFDDITAKIFPFLSDYL 363 (980)
T ss_pred HHHHHhcccchhhHHHHHHHHHHHH
Confidence 9999999999998888877776554
No 172
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=92.48 E-value=18 Score=39.27 Aligned_cols=157 Identities=17% Similarity=0.222 Sum_probs=93.5
Q ss_pred HhhhHHHHHHHh----cCCCHHHHHH-HHHHHHHhhcCCchhhhhchHHHHHHHH----HhcCC---CChhHHHHHHHHH
Q 005727 112 IEEFIPLLRERM----NVLNPYVRQF-LVGWITVLDSVPDIDMLGFLPDFLDGLF----NMLSD---SSHEIRQQADSAL 179 (680)
Q Consensus 112 L~~fIP~L~e~i----~~~np~vR~~-avswI~~L~sip~~~Li~~Lp~~L~~Lf----~lLsD---~~~dVR~~a~~~L 179 (680)
.+.|+|++.+.+ ....|..|.- .++.+..+...-+..+.+++|.+++.+| .|..+ .-||.|..=-+.|
T Consensus 65 ~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL 144 (319)
T PF08767_consen 65 ANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLL 144 (319)
T ss_dssp HHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHH
Confidence 344666666533 1234444433 2333444443334445567777777766 56655 4689997766666
Q ss_pred HHHHHHhhc----CCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCc-------c-cccchHhHHHHHhhhhc
Q 005727 180 WEFLQEIKN----SPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD-------Q-LVPYYADILGAILPCIS 247 (680)
Q Consensus 180 ~~fL~ei~~----~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~-------~-l~pfLp~LLp~LL~~Ls 247 (680)
..+.+..-. -|.-.+..+++.++..+++++.+|...++..+.++++-... . +..|.=.++.-++..+.
T Consensus 145 ~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vlt 224 (319)
T PF08767_consen 145 RAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLT 224 (319)
T ss_dssp HHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666554311 12235788999999999999999999999998888653221 1 23456677777888888
Q ss_pred CCc--hhHHHHHHHHHHHHHHhcc
Q 005727 248 DKE--EKIRVVARETNEELRAIKA 269 (680)
Q Consensus 248 ds~--~eIR~~A~~~n~~Ll~~v~ 269 (680)
|+. ...+..+ .....+...+.
T Consensus 225 D~~Hk~gf~~q~-~iL~~Lf~~ve 247 (319)
T PF08767_consen 225 DSDHKSGFKLQS-QILSNLFRLVE 247 (319)
T ss_dssp STT-GGGHHHHH-HHHHHHHHHHH
T ss_pred CcccHHHHHHHH-HHHHHHHHHHH
Confidence 774 2333332 44445555443
No 173
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.47 E-value=0.86 Score=49.00 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=88.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhc----CCchhHHHHHHHHHHHHHHhccCCC
Q 005727 197 MAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS----DKEEKIRVVARETNEELRAIKADPA 272 (680)
Q Consensus 197 II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Ls----ds~~eIR~~A~~~n~~Ll~~v~~~~ 272 (680)
....++..+.++|+.++..|+.-+..++.-++........++++.++..+. .++.+....|..+.+.+++.-.--.
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 455566678888999999999999988877765544322344454444444 3445566777776665543210000
Q ss_pred CCCChHhHHHHHHHhc------C-CCcHHHHHHHH--HHHHHHHhhChhhHhhhhHHHHHHHHHhcCCC-CHHHHHHHHH
Q 005727 273 DGFDVGPILSIATRQL------S-SEWEATRIEAL--HWISTLLNRHRTEVLHFLNDIFDTLLKALSDP-SDEVVLLVLE 342 (680)
Q Consensus 273 ~~ldl~~iL~vL~~~L------~-~~~~~tR~aaL--~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~-s~eV~~~al~ 342 (680)
.-++ ...++.+...+ . ..+.+....++ .|+..+-+..-+.+..+. ++|.|...+++. .+.|++.++.
T Consensus 186 ~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~--~i~~L~~i~~~~~KEKvvRv~la 262 (312)
T PF03224_consen 186 VFWK-SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY--LIPLLADILKDSIKEKVVRVSLA 262 (312)
T ss_dssp HHHT-HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS--HHHHHHHHHHH--SHHHHHHHHH
T ss_pred HHHh-cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc--hHHHHHHHHHhcccchHHHHHHH
Confidence 0011 44555555555 1 22233444444 688877777766776655 999999998876 5788889999
Q ss_pred HHHHHhhc
Q 005727 343 VHACIAKD 350 (680)
Q Consensus 343 lLa~Is~~ 350 (680)
++..+.+.
T Consensus 263 ~l~Nl~~~ 270 (312)
T PF03224_consen 263 ILRNLLSK 270 (312)
T ss_dssp HHHHTTSS
T ss_pred HHHHHHhc
Confidence 99888853
No 174
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.29 E-value=38 Score=42.35 Aligned_cols=106 Identities=23% Similarity=0.254 Sum_probs=78.2
Q ss_pred hcCCChhHHHHH-HHHHHHHHHHhhcc----ccccHhh-hHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHH
Q 005727 82 SADSDANVQSAA-HLLDRLVKDIVTES----DQFSIEE-FIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPD 155 (680)
Q Consensus 82 ~aD~d~~Vr~gA-~~Ldrllkdiv~es----~~f~L~~-fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~ 155 (680)
.....-..|++. +.+..++.+..... ...++.. ++..|.+++.|.+++||.-+++....+..-+.. -.....+
T Consensus 321 ld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~-p~~~~~e 399 (1251)
T KOG0414|consen 321 LDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSI-PLGSRTE 399 (1251)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCC-CccHHHH
Confidence 444455788877 66666655444421 1233444 999999999999999999999877766443321 1456788
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhc
Q 005727 156 FLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (680)
Q Consensus 156 ~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~ 188 (680)
++...+.-+.|-+.-||+.|.+.+..|+...+-
T Consensus 400 V~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pf 432 (1251)
T KOG0414|consen 400 VLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPF 432 (1251)
T ss_pred HHHHHhcccccccHHHHHHHHHHHHHHHhcCCc
Confidence 999999999999999999999999999875543
No 175
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.95 E-value=5.6 Score=46.77 Aligned_cols=180 Identities=14% Similarity=0.130 Sum_probs=111.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccc-ccchHhHH----HHHhhhhcCCchhHHHHHHHHH----HHHHHhcc
Q 005727 199 EILVQRAASPDEFTRLTAITWINEFVKLGGDQL-VPYYADIL----GAILPCISDKEEKIRVVARETN----EELRAIKA 269 (680)
Q Consensus 199 ~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l-~pfLp~LL----p~LL~~Lsds~~eIR~~A~~~n----~~Ll~~v~ 269 (680)
|+|...++.++.+||..|..-+-++--+-+++. ..=...++ -.+.+.|.|+-|.||..|.+-. ..+-.++.
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 456667888999999999886655544433332 22233444 3667788899999999886532 22333332
Q ss_pred CCCCCCChHhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005727 270 DPADGFDVGPILSIATRQL-SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 270 ~~~~~ldl~~iL~vL~~~L-~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is 348 (680)
.+ -+-+++..+...+ .+....+|.++.+-|-+++..- .-.+.++.++|++=.+|-|.+..||-...+.|.+|-
T Consensus 257 ~~----i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 257 PT----ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HH----HHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 10 0123333333334 3445678999998887776642 123557778888888999999999999999999987
Q ss_pred hc--cchHHH-HHHHHHHhhcccchhHHhHHHHHHHHHH
Q 005727 349 KD--LQHFRQ-LVVFLVHNFRVDNSLLEKRGALIIRRLC 384 (680)
Q Consensus 349 ~~--~~~F~~-fm~~LL~lf~~d~~lLe~rg~~IIrqLc 384 (680)
.. -++|+- -|..++..+..|+.-.-+|....|-+-|
T Consensus 331 ~vra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~ 369 (1005)
T KOG1949|consen 331 AVRAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSF 369 (1005)
T ss_pred hhhhhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 31 223332 4666777776665544444333333333
No 176
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.94 E-value=21 Score=41.62 Aligned_cols=121 Identities=14% Similarity=0.096 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHHHHHh-cCcc-------cccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhH
Q 005727 209 DEFTRLTAITWINEFVKL-GGDQ-------LVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPI 280 (680)
Q Consensus 209 d~~irl~Al~WL~e~~~l-~~~~-------l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~i 280 (680)
++.++.+|+--.+.++.- +... .-.|++.+...+-.+.+..+.+.+.++.++.| + ...+..
T Consensus 410 ~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG-------N----~g~~~~ 478 (574)
T smart00638 410 QPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG-------N----AGHPSS 478 (574)
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh-------c----cCChhH
Confidence 456777777777766652 1111 12345555555555555555555555555544 2 124666
Q ss_pred HHHHHHhcC-C--CcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCC--CCHHHHHHHHHHHHHH
Q 005727 281 LSIATRQLS-S--EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSD--PSDEVVLLVLEVHACI 347 (680)
Q Consensus 281 L~vL~~~L~-~--~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD--~s~eV~~~al~lLa~I 347 (680)
++++...+. + ....+|.+|+..|..++..+|..+.+. +++.+.| +.+|||-.|+-+|.+-
T Consensus 479 i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~-------l~~i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 479 IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEV-------LLPIYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHH-------HHHHHcCCCCChHHHHHHHHHHHhc
Confidence 666666665 2 235689999999999999998876654 4444444 4688998888777754
No 177
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.87 E-value=2.1 Score=49.98 Aligned_cols=192 Identities=16% Similarity=0.145 Sum_probs=116.7
Q ss_pred HHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhc-CCchhHHHHHHHHHHHHHHhcc
Q 005727 195 GRMAEILVQRAAS----PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS-DKEEKIRVVARETNEELRAIKA 269 (680)
Q Consensus 195 ~~II~iLl~~~~s----~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Ls-ds~~eIR~~A~~~n~~Ll~~v~ 269 (680)
.++-|+..+-|.+ .|++++.+|---+..+.-++. .|..+=+|.++..|. .++|.||.-|.-..+++.-...
T Consensus 891 s~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~----~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN 966 (1128)
T COG5098 891 SNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSF----EFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN 966 (1128)
T ss_pred hhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence 3444555554444 689999888777776665554 355666777777777 7789999655444443211100
Q ss_pred CCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005727 270 DPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (680)
Q Consensus 270 ~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~ 349 (680)
--.+..-+.|-+.|.+++..+|..|+..+..+.-.-.-++. +-.+.+..+|.|++.++-..+--.+-++++
T Consensus 967 -----~~~de~t~yLyrrL~De~~~V~rtclmti~fLilagq~KVK----Gqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098 967 -----TTADEHTHYLYRRLGDEDADVRRTCLMTIHFLILAGQLKVK----GQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred -----hhhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHccceeec----cchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence 01356667899999999999999999888766654433333 345667789999999998888888888884
Q ss_pred ccc-hHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcChhhHHHHHHHhh
Q 005727 350 DLQ-HFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTIL 400 (680)
Q Consensus 350 ~~~-~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~e~Iy~~La~iL 400 (680)
.+. -...|+. +-..+..+....++--..||+-|-..+.-|+=-+.+.+-|
T Consensus 1038 KdNt~yn~fid-ifs~ls~~ae~g~e~fk~II~FLt~fI~kerh~kql~E~L 1088 (1128)
T COG5098 1038 KDNTMYNGFID-IFSTLSSDAENGQEPFKLIIGFLTDFISKERHQKQLKESL 1088 (1128)
T ss_pred cccchhhhhHH-HHHHcCchhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 1222221 1111222222222223356666666666665555555544
No 178
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.86 E-value=1.8 Score=47.71 Aligned_cols=128 Identities=13% Similarity=0.166 Sum_probs=99.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCCh
Q 005727 198 AEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV 277 (680)
Q Consensus 198 I~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl 277 (680)
+.-|+.++.+.+..+|..|+.-+...+.--+..+..++-.+++.+.+...|.+..+|......++.++-......-...+
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~ 139 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMV 139 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchH
Confidence 34456678888999999999999888777777777788899999999999999999999988887644332211123345
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHH
Q 005727 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTL 325 (680)
Q Consensus 278 ~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~L 325 (680)
.-+++.+...+.+...++|+-++..+..+++.||+.+..+...+++..
T Consensus 140 ~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~il~n~ 187 (393)
T KOG2149|consen 140 SLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASKILENF 187 (393)
T ss_pred HHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 566677777788888999999999999999999988877666644433
No 179
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.79 E-value=20 Score=38.17 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=90.5
Q ss_pred chHHHHHHHH-HhcCCCChhHHHHHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCc
Q 005727 152 FLPDFLDGLF-NMLSDSSHEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD 229 (680)
Q Consensus 152 ~Lp~~L~~Lf-~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d-~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~ 229 (680)
.+.++++.|. ..+.-++++||+.+-+||+-+.- +. .+ -..-++.+....+..++.++.+|+..+-.++...|.
T Consensus 23 ~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~L-ld----~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~ 97 (298)
T PF12719_consen 23 SLESLLDSLILPAVQSSDPAVRELALKCLGLCCL-LD----KELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGI 97 (298)
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-hC----hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCc
Confidence 3447777766 56666788999999999997753 21 12 244566666666666899999999999888877665
Q ss_pred ccccch---------HhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCC-hHhHHHHHHHhcCCC
Q 005727 230 QLVPYY---------ADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD-VGPILSIATRQLSSE 291 (680)
Q Consensus 230 ~l~pfL---------p~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ld-l~~iL~vL~~~L~~~ 291 (680)
....-. ..++..+.+.+.+.+++++.+|.+....++-. ..+. .+.++..|.....++
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~-----~~i~~~~~vL~~Lll~yF~p 164 (298)
T PF12719_consen 98 DIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS-----GRISDPPKVLSRLLLLYFNP 164 (298)
T ss_pred hhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc-----CCCCcHHHHHHHHHHHHcCc
Confidence 554433 35888999999988999999988877654322 1122 367777666555543
No 180
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=91.76 E-value=15 Score=39.84 Aligned_cols=141 Identities=12% Similarity=0.138 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhhcC-Cchhh--hhchHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHHHhhcCCCCChHHHHHHHHHhc
Q 005727 130 VRQFLVGWITVLDSV-PDIDM--LGFLPDFLDGLFNMLSDSSHEIRQ-QADSALWEFLQEIKNSPSVDYGRMAEILVQRA 205 (680)
Q Consensus 130 vR~~avswI~~L~si-p~~~L--i~~Lp~~L~~Lf~lLsD~~~dVR~-~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~ 205 (680)
+|+-++..+..+.+. ++.+. ...+|.+++.+..==.++.|+.|. ++-+++..+++.++......++.|++.+..++
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T 122 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT 122 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 455566666655443 32222 134444444333222336677773 35566677777776655566777776665543
Q ss_pred ----CC---CCHHHHHHHHHHHHHHHHhcCcccccc----hHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccC
Q 005727 206 ----AS---PDEFTRLTAITWINEFVKLGGDQLVPY----YADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (680)
Q Consensus 206 ----~s---~d~~irl~Al~WL~e~~~l~~~~l~pf----Lp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~ 270 (680)
.. .-|+.|..--..++.+++.+...+... +..++..+.-++.+.+.+|.+.+.++..++++-+..
T Consensus 123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 22 127889888888988888776665543 567778888888999999999999888887766654
No 181
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=91.59 E-value=23 Score=38.71 Aligned_cols=194 Identities=13% Similarity=0.084 Sum_probs=132.4
Q ss_pred hhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccc--------hhhhHHHHHHHHHHhhcCCChhHHHHHHHH---
Q 005727 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGD--------FIIFFNQIFDALCKLSADSDANVQSAAHLL--- 96 (680)
Q Consensus 28 ~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~--------il~~f~eIfd~L~kL~aD~d~~Vr~gA~~L--- 96 (680)
-|-..++..++.++..=+-..|+-++....++.+...++ +..++++|++.|+++.+++|...--|.-+-
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~ 151 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECI 151 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHT
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHH
Confidence 344567778888999889999999888777776443222 224458999999999999998666555211
Q ss_pred --HHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCch----hhhhchHHHHHHHHHhcCCCChh
Q 005727 97 --DRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI----DMLGFLPDFLDGLFNMLSDSSHE 170 (680)
Q Consensus 97 --drllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~----~Li~~Lp~~L~~Lf~lLsD~~~d 170 (680)
..+++-+.. ++ .+-.+.+.+...+..+-.-+.+.+..+....+. -+..+.+.|+...-+++..+|=-
T Consensus 152 k~e~l~~~iL~-~~------~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYv 224 (335)
T PF08569_consen 152 KHESLAKIILY-SE------CFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYV 224 (335)
T ss_dssp TSHHHHHHHHT-SG------GGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHH
T ss_pred hhHHHHHHHhC-cH------HHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeE
Confidence 123332232 22 344477888889999988888888876555442 25567888999888899888999
Q ss_pred HHHHHHHHHHHHHHHhhcC----CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC
Q 005727 171 IRQQADSALWEFLQEIKNS----PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG 228 (680)
Q Consensus 171 VR~~a~~~L~~fL~ei~~~----~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~ 228 (680)
+|+.+-.+|++++..=.+. ..++=+.-+..++..++++...||..|.+-...|+.-+.
T Consensus 225 tkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 225 TKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred eehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence 9999999999998522110 012335667788888999999999999999998876643
No 182
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=91.46 E-value=11 Score=37.59 Aligned_cols=62 Identities=24% Similarity=0.304 Sum_probs=47.6
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHH
Q 005727 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRL 99 (680)
Q Consensus 34 v~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrl 99 (680)
++.|+++..+++..||..|.+.+.-+.+ ++ +.+-.+.+|.|.-+.+|+++.+|+-| ..+..+
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~---qG-LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l 72 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILR---QG-LVNPKQCVPTLIALETSPNPSIRSRAYQLLKEL 72 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHh---cC-CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHH
Confidence 3557778889999999999988766543 33 23556889999999999999999999 444433
No 183
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.37 E-value=3.7 Score=44.01 Aligned_cols=143 Identities=20% Similarity=0.164 Sum_probs=101.0
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCC
Q 005727 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS 191 (680)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~ 191 (680)
+...|..+..-+......|-..+|-.+.-+-+.-+..+..-++..+..|..-.++.+.=||..|..+|..++. +
T Consensus 127 L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~------~ 200 (334)
T KOG2933|consen 127 LHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVN------H 200 (334)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHh------c
Confidence 5566777777777777888888888888666555555555666667667766777888899999999998886 3
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-Hhc-CcccccchHhHHHHHhhhhcCCchhHHHHHHHH
Q 005727 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFV-KLG-GDQLVPYYADILGAILPCISDKEEKIRVVARET 260 (680)
Q Consensus 192 ~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~-~l~-~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~ 260 (680)
+.=..+++.|+...++.++.++..+.--...++ .++ +....+|.-++.+.+-..++|.-++.|+.|.-.
T Consensus 201 vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl~~a~~~~~~d~Lp~~~~~a~~~ 271 (334)
T KOG2933|consen 201 VTPQKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDLSRAAQEQGSDKLPELREAARFV 271 (334)
T ss_pred cChHHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhhHhHHHHHHHHHhhhcccccccccchhHH
Confidence 445678888888888888888877654222222 222 223456667888888888888888877766543
No 184
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.18 E-value=19 Score=39.40 Aligned_cols=177 Identities=20% Similarity=0.155 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccc-hhhhHHHHHHHHHHh
Q 005727 3 KWYSFLFEIIVEQFLLYADLFFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGD-FIIFFNQIFDALCKL 81 (680)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~-il~~f~eIfd~L~kL 81 (680)
||++=.|+..-|----+-+.+..+...+.. ++.....-...+.+=|.-|.+-|...+...... -+.- ..-+..|..+
T Consensus 55 k~~~e~~~~~~e~~k~~~~~~~~~~~~~~~-~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~-~ggl~~ll~~ 132 (342)
T KOG2160|consen 55 KWLQELMQAHTEDQKDFVEDMKVISDVMSM-IPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLIS-LGGLVPLLGY 132 (342)
T ss_pred HHHHHHHHHhhhhhhhhcccchhHHHHHHh-hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhh-ccCHHHHHHH
Confidence 777766665553222222222233333333 222222223445565666655544433322211 1111 1123334447
Q ss_pred hcCCChhHHHHH-HHHHHHHH------HHhhccccccHhhhHHHHHHHhcCCC-HHHHHHHHHHHHHhhcC--Cchhhhh
Q 005727 82 SADSDANVQSAA-HLLDRLVK------DIVTESDQFSIEEFIPLLRERMNVLN-PYVRQFLVGWITVLDSV--PDIDMLG 151 (680)
Q Consensus 82 ~aD~d~~Vr~gA-~~Ldrllk------div~es~~f~L~~fIP~L~e~i~~~n-p~vR~~avswI~~L~si--p~~~Li~ 151 (680)
+.++++.+|..| ..+...+. ..|-|.+ +.+.|...+...+ -.+|..|+..|+.+... |+.+-.-
T Consensus 133 l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~------~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl 206 (342)
T KOG2160|consen 133 LENSDAELRELAARVIGTAVQNNPKSQEQVIELG------ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFL 206 (342)
T ss_pred hcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcc------cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 899999999988 55555433 2222322 5666666666544 47778999999977653 3333333
Q ss_pred chHHHHHHHHHhcCCCChhHH--HHHHHHHHHHHHHhhc
Q 005727 152 FLPDFLDGLFNMLSDSSHEIR--QQADSALWEFLQEIKN 188 (680)
Q Consensus 152 ~Lp~~L~~Lf~lLsD~~~dVR--~~a~~~L~~fL~ei~~ 188 (680)
-++. +.+|...+.+++.+|| ..|..++..++.+-+.
T Consensus 207 ~~~G-~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 207 KLNG-YQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred hcCC-HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 3444 6788889988766665 5566888888876654
No 185
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=91.03 E-value=25 Score=39.21 Aligned_cols=272 Identities=18% Similarity=0.239 Sum_probs=134.7
Q ss_pred hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhh
Q 005727 70 FFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM 149 (680)
Q Consensus 70 ~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~L 149 (680)
+...+.+-+.+.+..+|-+-+-|...+|+ .||-.|.+.+.++||+-|.++=+.+..+.. .+
T Consensus 148 hLqlvye~~Lrf~~sp~~d~~vaK~yid~---------------~FvlkLLdLFdSEDpRERe~LKT~LhrIyg----Kf 208 (457)
T KOG2085|consen 148 HLQLVYEFLLRFLESPDFDPSVAKKYIDQ---------------KFVLKLLDLFDSEDPREREFLKTILHRIYG----KF 208 (457)
T ss_pred HHHHHHHHHHHHHhCcccCHHHHHHHhhH---------------HHHHHHHHHhcCCChHHHHHHHHHHHHHHH----HH
Confidence 34456666777777666554444444443 388899999999999999998877765442 12
Q ss_pred hhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCC---CC-HHHHHHHHHHHHHHHH
Q 005727 150 LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAAS---PD-EFTRLTAITWINEFVK 225 (680)
Q Consensus 150 i~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s---~d-~~irl~Al~WL~e~~~ 225 (680)
..+.|- +|+.-.+.+=+|+-+-. .+..++++++|+-.-+.- |- ++.+..-. ..++.
T Consensus 209 l~~r~f---------------irk~iNNif~~FIyEte--~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~---rvLip 268 (457)
T KOG2085|consen 209 LVHRPF---------------IRKSINNIFLRFIYETE--RHNGIAELLEILGSIINGFALPLKEEHKLFLV---RVLIP 268 (457)
T ss_pred hhhHHH---------------HHHhhcchhhhhccccc--ccCCHHHHHHHHHHhcCcccCcchhHHHHHHH---Hhhhc
Confidence 222222 33333333333333222 234456666655544432 21 34444322 22222
Q ss_pred hcCc-cc--------------c----cchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChH----hHHH
Q 005727 226 LGGD-QL--------------V----PYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVG----PILS 282 (680)
Q Consensus 226 l~~~-~l--------------~----pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~----~iL~ 282 (680)
+.+. .+ + .-.+.++.++++----.+...+.+.....++.++.+.. ..|. ++..
T Consensus 269 Lhk~k~l~~yh~QLaYcivQfveKd~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep----~eFqk~~~PLf~ 344 (457)
T KOG2085|consen 269 LHKPKSLSLYHKQLAYCIVQFVEKDPKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEP----SEFQKIMVPLFR 344 (457)
T ss_pred cccCCCccccccccceeeeeeeccCccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCH----HHHHHHhHHHHH
Confidence 2211 11 1 11334444444433222222222233333333343321 1233 3444
Q ss_pred HHHHhcCCCcHHHHHHHHH-HHHH-HHhhChhhHhhhhHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhh-ccchHHHHH
Q 005727 283 IATRQLSSEWEATRIEALH-WIST-LLNRHRTEVLHFLNDIFDTLLKALSDP-SDEVVLLVLEVHACIAK-DLQHFRQLV 358 (680)
Q Consensus 283 vL~~~L~~~~~~tR~aaL~-WL~~-L~~~~p~~~~~~l~~l~p~LL~~LsD~-s~eV~~~al~lLa~Is~-~~~~F~~fm 358 (680)
.+...+.+++-++-+.|+- |=.. +.....+.-.-.+|-+||+|.+.-+.- ...|+..++.++.-+.+ +...|+.-.
T Consensus 345 qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFeec~ 424 (457)
T KOG2085|consen 345 QIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFEECL 424 (457)
T ss_pred HHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 5666677888888777774 3221 122222222334566888888765433 56778888888888875 455555544
Q ss_pred HHHHHhhcccchhHHhHHHHHHHHHHh
Q 005727 359 VFLVHNFRVDNSLLEKRGALIIRRLCV 385 (680)
Q Consensus 359 ~~LL~lf~~d~~lLe~rg~~IIrqLc~ 385 (680)
...-.-=..+....+.| +..+++|..
T Consensus 425 ~~y~~~~~k~~~~~~~r-e~~W~~le~ 450 (457)
T KOG2085|consen 425 ALYKEDRWKEKETEEKR-EETWKRLEE 450 (457)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 33322222222333333 445555543
No 186
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=90.96 E-value=21 Score=36.81 Aligned_cols=202 Identities=17% Similarity=0.160 Sum_probs=124.8
Q ss_pred HHHHHH-HhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCh
Q 005727 116 IPLLRE-RMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDY 194 (680)
Q Consensus 116 IP~L~e-~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~ 194 (680)
+|.|.- .-...+|....-++..+..+.... - ...|.+++.|-.+...++.+.+..+..++..+.+ .. ...+
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~---~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~---~~-~r~f 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHK---N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWK---AN-DRHF 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccC---c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHH---hC-chHH
Confidence 444444 445678888888888888887665 2 5688899999999988888886666555555543 21 2223
Q ss_pred HHHHHHHHH---hc----CCCC--HHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhh-cCCchhHHHHHHHHHHHH
Q 005727 195 GRMAEILVQ---RA----ASPD--EFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCI-SDKEEKIRVVARETNEEL 264 (680)
Q Consensus 195 ~~II~iLl~---~~----~s~d--~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~L-sds~~eIR~~A~~~n~~L 264 (680)
+.+-+.+.. +. .+.+ .+.....-.-+..++...|+ +-+++++.|-.++ .+.++.++..|.+....+
T Consensus 74 ~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~L 149 (234)
T PF12530_consen 74 PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPL 149 (234)
T ss_pred HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 333333322 21 1112 33444444577888888776 6788888888888 777888888887777755
Q ss_pred HHhccCCCCCCChHhHHHHHHHhcCCCcHHH-HHHHHHHHHHHHhhCh--hhHhhhhHHHHHHHHHhcCCCCH
Q 005727 265 RAIKADPADGFDVGPILSIATRQLSSEWEAT-RIEALHWISTLLNRHR--TEVLHFLNDIFDTLLKALSDPSD 334 (680)
Q Consensus 265 l~~v~~~~~~ldl~~iL~vL~~~L~~~~~~t-R~aaL~WL~~L~~~~p--~~~~~~l~~l~p~LL~~LsD~s~ 334 (680)
. .++.+|+.....++...+..+..+. -.+-..|+..+..+.- ++...+..+++..+=+..+..+.
T Consensus 150 c-----~~~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 150 C-----EAEVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred H-----HHhhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 5 2356789999999999995444332 2222345554444432 23334444555555555555543
No 187
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=90.78 E-value=1.3 Score=51.72 Aligned_cols=191 Identities=17% Similarity=0.169 Sum_probs=117.5
Q ss_pred hHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhc-cccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchh
Q 005727 70 FFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTE-SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID 148 (680)
Q Consensus 70 ~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkdiv~e-s~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~ 148 (680)
|-..+.+.|+++++.+|..+|- .+|..+-+ .+.- ++..--+.+.|.+...+.|.|+.+|...+..+..+++.-+..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~--~LL~~i~~-~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRL--LLLQYIEK-YIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred cccchhhhHHHHhcCcchHHHH--HHHHhHHH-HhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 4456889999999999998885 33443322 1111 111223568999999999999999999999999888765543
Q ss_pred hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHH-HHHHhcCCCCHHHHHHHHHHHHHHHHhc
Q 005727 149 MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAE-ILVQRAASPDEFTRLTAITWINEFVKLG 227 (680)
Q Consensus 149 Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~-iLl~~~~s~d~~irl~Al~WL~e~~~l~ 227 (680)
..=.++++.+-++-.|.+..+|.-+.-||+..-.-+. +.+ -..+.. .....+.++-.-.|..++.-+..-.+..
T Consensus 404 --~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~--~~~-R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~ 478 (690)
T KOG1243|consen 404 --NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLA--ASV-RKRVLASAFTRALKDPFVPARKAGVLALAATQEYF 478 (690)
T ss_pred --hhcHHHHHHHHhhCccccCcccccceeeecccccccc--hhh-hccccchhhhhhhcCCCCCchhhhhHHHhhccccc
Confidence 2345788888888889999999877666664422110 000 011111 1111223332223444443222111111
Q ss_pred CcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccC
Q 005727 228 GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (680)
Q Consensus 228 ~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~ 270 (680)
+.-.--.+|+|.+.+...|.+..+|..|.++-..++....+
T Consensus 479 --~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 479 --DQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred --chhhhhhhccccccccccCcccchhhHHHHHHHHHHhhhhh
Confidence 11122457888888888999999999999888776655443
No 188
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=90.70 E-value=3.4 Score=45.27 Aligned_cols=147 Identities=15% Similarity=0.179 Sum_probs=90.0
Q ss_pred hhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCC-------CHHHHHHHHHH
Q 005727 147 IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP-------DEFTRLTAITW 219 (680)
Q Consensus 147 ~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~-------d~~irl~Al~W 219 (680)
.++..|+..+.. .+.+.+..-|.+| | ..+.. +..+..++|+++..+.+. +-..-...+..
T Consensus 174 ~Elq~yf~~It~----a~~~~~~~~r~~a---L----~sL~t--D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~ 240 (343)
T cd08050 174 KELQLYFEEITE----ALVGSNEEKRREA---L----QSLRT--DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRM 240 (343)
T ss_pred HHHHHHHHHHHH----HHhCCCHHHHHHH---H----HHhcc--CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence 334444444444 4445555555554 3 33333 567888888888876543 22223334444
Q ss_pred HHHHHHhcCcccccchHhHHHHHhhhhcC----------CchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcC
Q 005727 220 INEFVKLGGDQLVPYYADILGAILPCISD----------KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS 289 (680)
Q Consensus 220 L~e~~~l~~~~l~pfLp~LLp~LL~~Lsd----------s~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~ 289 (680)
+..++.-..-.+-||+..++|.++.|+.. ++-.+|+.|.+....+.+-.+.....+ .+.+...+.+.|.
T Consensus 241 v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l-~~ri~~tl~k~l~ 319 (343)
T cd08050 241 VRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTL-QPRITRTLLKALL 319 (343)
T ss_pred HHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcH-HHHHHHHHHHHHc
Confidence 55555556667889999999999999943 234799998888876665554322221 3567777777777
Q ss_pred CCc--HHHHHHHHHHHHHHH
Q 005727 290 SEW--EATRIEALHWISTLL 307 (680)
Q Consensus 290 ~~~--~~tR~aaL~WL~~L~ 307 (680)
++. ..+..-|+.-|..++
T Consensus 320 d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 320 DPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred CCCCCcchhhHHHHHHHHhC
Confidence 554 335777777666654
No 189
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=90.64 E-value=8.7 Score=43.12 Aligned_cols=220 Identities=15% Similarity=0.158 Sum_probs=116.8
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCC
Q 005727 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV 192 (680)
Q Consensus 113 ~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~ 192 (680)
..|+-.|.+.+.++||+=|..+.+.+..+.+. ..+--+.+|+...+.+.+|+.+... ..
T Consensus 132 ~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k-------------------~~~~r~~Ir~~i~~~~~~fi~e~~~--~~ 190 (409)
T PF01603_consen 132 QKFIKKLLELFDSPDPRERDYLKTILHRIYGK-------------------FPNLRSFIRKSINNIFYRFIYETER--HN 190 (409)
T ss_dssp HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH--------------------TTTHHHHHHHHHHHHHHHHHTTS----S
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH-------------------hhhhHHHHHHHHHHHHHHHhcCccc--cc
Confidence 57899999999999999999888887764421 1222345666666666666654432 34
Q ss_pred ChHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHHhc-CcccccchHhHHHHHhhhhcC------------------C
Q 005727 193 DYGRMAEILVQRAASPD----EFTRLTAITWINEFVKLG-GDQLVPYYADILGAILPCISD------------------K 249 (680)
Q Consensus 193 d~~~II~iLl~~~~s~d----~~irl~Al~WL~e~~~l~-~~~l~pfLp~LLp~LL~~Lsd------------------s 249 (680)
.+.++++++-...+.-. ++.+. .+...++-+- ...+..|.+++...+...+.. +
T Consensus 191 gI~elLeil~sii~gf~~plk~eh~~---fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t 267 (409)
T PF01603_consen 191 GIAELLEILGSIINGFAVPLKEEHKQ---FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKT 267 (409)
T ss_dssp THHHHHHHHHHHHTT--SS--HHHHH---HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS
T ss_pred CHHHHHHHHHHHHhccCCCCcHHHHH---HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCC
Confidence 56777777766655321 22221 1222222222 223444445554444443331 1
Q ss_pred chhHHHHHHHHHHHHHHhccCCCCCCCh----HhHHHHHHHhcCCCcHHHHHHHHHHHH-HHHhhChhhHhhhhHHHHHH
Q 005727 250 EEKIRVVARETNEELRAIKADPADGFDV----GPILSIATRQLSSEWEATRIEALHWIS-TLLNRHRTEVLHFLNDIFDT 324 (680)
Q Consensus 250 ~~eIR~~A~~~n~~Ll~~v~~~~~~ldl----~~iL~vL~~~L~~~~~~tR~aaL~WL~-~L~~~~p~~~~~~l~~l~p~ 324 (680)
+.........-.+.++..+. .-++ ..+...+...+.+++..+-+.|+..+. .-.. .-+..+...++|.
T Consensus 268 ~s~Kev~FL~el~~il~~~~----~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~---~li~~~~~~i~p~ 340 (409)
T PF01603_consen 268 NSQKEVLFLNELEEILEVLP----PEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFL---SLISQNSRVILPI 340 (409)
T ss_dssp -HHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHH---HHHHCTHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHH---HHHHhChHHHHHH
Confidence 11111111111222222211 1112 345567777888999999999985322 1000 1123444556666
Q ss_pred HHHhcCC-----CCHHHHHHHHHHHHHHhh-ccchHHHHHHHHHH
Q 005727 325 LLKALSD-----PSDEVVLLVLEVHACIAK-DLQHFRQLVVFLVH 363 (680)
Q Consensus 325 LL~~LsD-----~s~eV~~~al~lLa~Is~-~~~~F~~fm~~LL~ 363 (680)
+.+.|.. =+..|+..+..++.-+.+ +.+-|++.....-.
T Consensus 341 i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~~~~~~~ 385 (409)
T PF01603_consen 341 IFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKCAQKYKE 385 (409)
T ss_dssp HHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 6665543 257899999999998885 44556665555433
No 190
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.59 E-value=38 Score=39.12 Aligned_cols=300 Identities=13% Similarity=0.169 Sum_probs=168.0
Q ss_pred HHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhccc--cccHh------hhHHHHHHHhcCCC--HHHHHHHHHHHHH
Q 005727 71 FNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESD--QFSIE------EFIPLLRERMNVLN--PYVRQFLVGWITV 140 (680)
Q Consensus 71 f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkdiv~es~--~f~L~------~fIP~L~e~i~~~n--p~vR~~avswI~~ 140 (680)
-..++..++.++.++|.+- +..|.+.++-..+... .++.+ .+|-.+++-+.+.+ ..+-...+..++.
T Consensus 151 ~~~~L~~l~~lLe~~~l~~---~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll~~ 227 (559)
T KOG2081|consen 151 VSKVLVFLSDLLERSDLKS---SDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDDELHEEATECICALLYC 227 (559)
T ss_pred HHHHHHHHHHHHhhcCCCh---hhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHHHH
Confidence 3456666666666665432 1223344443333211 22222 34555555555332 2444555666665
Q ss_pred hhcCCc---hh-hhhchHHHHHHHHHhcC-CCChhHHHHHHHHHHHHHH----HhhcCCCCChHHHHHHHHHhcCCCCHH
Q 005727 141 LDSVPD---ID-MLGFLPDFLDGLFNMLS-DSSHEIRQQADSALWEFLQ----EIKNSPSVDYGRMAEILVQRAASPDEF 211 (680)
Q Consensus 141 L~sip~---~~-Li~~Lp~~L~~Lf~lLs-D~~~dVR~~a~~~L~~fL~----ei~~~~~~d~~~II~iLl~~~~s~d~~ 211 (680)
...... .+ ..-.-+-+|+..+++.. .-+.|=+.+.++.+..+.+ .|...++ ++-.+++.++-...+++.+
T Consensus 228 ~~~~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~-~~l~~vellLl~~~h~~~e 306 (559)
T KOG2081|consen 228 SLDRSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPE-EFLRIVELLLLVAGHNDTE 306 (559)
T ss_pred hhhhhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCC-cchhHHHHHHHhccCCchh
Confidence 544332 22 22233456666776542 2344444444555444433 3334444 5667888888888888887
Q ss_pred HHHHHHH-HHH--HHHHhc-----CcccccchHhHHHHHhhhhcCCc---------h---hHHHHHHHHHHHHHHhccCC
Q 005727 212 TRLTAIT-WIN--EFVKLG-----GDQLVPYYADILGAILPCISDKE---------E---KIRVVARETNEELRAIKADP 271 (680)
Q Consensus 212 irl~Al~-WL~--e~~~l~-----~~~l~pfLp~LLp~LL~~Lsds~---------~---eIR~~A~~~n~~Ll~~v~~~ 271 (680)
+...... |.+ +.+... -..+.||.-+++..+....++.. . +-|....++..+..-++++
T Consensus 307 vie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs- 385 (559)
T KOG2081|consen 307 VIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGS- 385 (559)
T ss_pred hhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCc-
Confidence 7665555 653 233222 23578999999999999887653 1 2232222333333233332
Q ss_pred CCCCChHhHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCC--CCHHHHHHHHHHHHHH
Q 005727 272 ADGFDVGPILSIATRQLS--SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSD--PSDEVVLLVLEVHACI 347 (680)
Q Consensus 272 ~~~ldl~~iL~vL~~~L~--~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD--~s~eV~~~al~lLa~I 347 (680)
+..+..+...+. ...|+.-+|+|--+.+++... .+.-.+++|.+++.+.. ...-+|..++-++++|
T Consensus 386 ------~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~----~~~e~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~ 455 (559)
T KOG2081|consen 386 ------DECLKQMYIRLKENNASWEEVEAALFILRAVAKNV----SPEENTIMPEVLKLICNLPEQAPLRYTSILLLGEY 455 (559)
T ss_pred ------HHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccC----CccccchHHHHHHHHhCCccchhHHHHHHHHHHHH
Confidence 444554444444 456999999999988888765 45566677777766543 3334888999999999
Q ss_pred hh---c-cchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhc
Q 005727 348 AK---D-LQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLL 387 (680)
Q Consensus 348 s~---~-~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L 387 (680)
++ . ...+..+..-+...+...+ +..-.+..++.+|...
T Consensus 456 ~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c 497 (559)
T KOG2081|consen 456 SEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICSAC 497 (559)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHH
Confidence 83 3 4445555555555544433 6667777888887643
No 191
>PF05536 Neurochondrin: Neurochondrin
Probab=90.48 E-value=41 Score=39.29 Aligned_cols=180 Identities=17% Similarity=0.110 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHHHhhcCC-----CCChHHHHHHH
Q 005727 128 PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSH-EIRQQADSALWEFLQEIKNSP-----SVDYGRMAEIL 201 (680)
Q Consensus 128 p~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~-dVR~~a~~~L~~fL~ei~~~~-----~~d~~~II~iL 201 (680)
..-+..+++.+..|...|...--+-+-.-+|.|...+...+. ++-..|-+||..+. .-+... .-+++.+.+++
T Consensus 71 ~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~ 149 (543)
T PF05536_consen 71 EEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEII 149 (543)
T ss_pred HHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHH
Confidence 356788999999998866643333344444455556666555 77777777776665 221110 11345555555
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhh----hcCCchhHHHHHHHHHHHHHHhccC-CCC---
Q 005727 202 VQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPC----ISDKEEKIRVVARETNEELRAIKAD-PAD--- 273 (680)
Q Consensus 202 l~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~----Lsds~~eIR~~A~~~n~~Ll~~v~~-~~~--- 273 (680)
.+ .+.....|+..+..++...+....+--++.+..+++. .+....+.+-.+.+....++..... +..
T Consensus 150 ~~-----~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~ 224 (543)
T PF05536_consen 150 PN-----QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPP 224 (543)
T ss_pred Hh-----CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCC
Confidence 44 3334555555333333333322222333333334343 3333444444444555544443311 011
Q ss_pred -CCChHhHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhChhh
Q 005727 274 -GFDVGPILSIATRQLSS-EWEATRIEALHWISTLLNRHRTE 313 (680)
Q Consensus 274 -~ldl~~iL~vL~~~L~~-~~~~tR~aaL~WL~~L~~~~p~~ 313 (680)
.-=...+...+...+.+ .....|-.++.....+.+..+.+
T Consensus 225 ~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 225 SPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred hhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 11135566666666654 34557999998888888886654
No 192
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=90.43 E-value=43 Score=39.43 Aligned_cols=347 Identities=16% Similarity=0.105 Sum_probs=176.5
Q ss_pred HHHHHHHHhhcCCC-hhHHHHH-HHHHHHHHHHhhc--cccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchh
Q 005727 73 QIFDALCKLSADSD-ANVQSAA-HLLDRLVKDIVTE--SDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID 148 (680)
Q Consensus 73 eIfd~L~kL~aD~d-~~Vr~gA-~~Ldrllkdiv~e--s~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~ 148 (680)
..++.|..+++++| .+|+++. ..+..++...-.. ........+++.+..-...+..++-+.-++.+...++++...
T Consensus 95 ~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq 174 (678)
T KOG1293|consen 95 IELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQ 174 (678)
T ss_pred hhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhh
Confidence 46777888999999 7999888 5555554433111 112334566777665544466777788888888888888877
Q ss_pred hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCh--------HHHHH--HHHHhcCCCCHHHHHHHHH
Q 005727 149 MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDY--------GRMAE--ILVQRAASPDEFTRLTAIT 218 (680)
Q Consensus 149 Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~--------~~II~--iLl~~~~s~d~~irl~Al~ 218 (680)
.+-+=..+.+.+--++.--+-.+|.+|-.++.+-.+.+.+.+...+ .++.+ ..-.-.++++...+..++.
T Consensus 175 ~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~ 254 (678)
T KOG1293|consen 175 LILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLE 254 (678)
T ss_pred heeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHH
Confidence 7666555555554444444667888887777642222223321100 11111 1122234555555666555
Q ss_pred HHHHHHHhcC------cccccc--h-------HhH--------------------HHHHhhhhcCCchhHHHHHHHHHHH
Q 005727 219 WINEFVKLGG------DQLVPY--Y-------ADI--------------------LGAILPCISDKEEKIRVVARETNEE 263 (680)
Q Consensus 219 WL~e~~~l~~------~~l~pf--L-------p~L--------------------Lp~LL~~Lsds~~eIR~~A~~~n~~ 263 (680)
-+..+...+. .+..+| - -.+ +..+..++++. +....+.+.-.+
T Consensus 255 cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~--~~e~~~~~~~~e 332 (678)
T KOG1293|consen 255 CLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLP--QHEEATLKTTTE 332 (678)
T ss_pred HHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhH--HhhhhhhhhHHH
Confidence 5544444330 011111 0 001 11122222211 111111111111
Q ss_pred HHHhcc-----------------------CCCCCCC------hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC---h
Q 005727 264 LRAIKA-----------------------DPADGFD------VGPILSIATRQLSSEWEATRIEALHWISTLLNRH---R 311 (680)
Q Consensus 264 Ll~~v~-----------------------~~~~~ld------l~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~---p 311 (680)
++.... ..+.+.+ -..+...+...........+.||+.-+..+.... .
T Consensus 333 llf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~ 412 (678)
T KOG1293|consen 333 LLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALR 412 (678)
T ss_pred HHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 111100 0011111 1233334444444555666666665444333221 1
Q ss_pred hhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh----hcc-chHH-HHHHHHHHhhcccchhHHhHHHHHHHHHHh
Q 005727 312 TEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA----KDL-QHFR-QLVVFLVHNFRVDNSLLEKRGALIIRRLCV 385 (680)
Q Consensus 312 ~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is----~~~-~~F~-~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~ 385 (680)
.+ +--.+....|++.|.||+-.|-..++.++..+. +-. .|+. .++..+..+..+-.....+..--+.|++--
T Consensus 413 tg--~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f 490 (678)
T KOG1293|consen 413 TG--LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF 490 (678)
T ss_pred cC--CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 12 223445566788889999999988888777766 222 2332 266666666654433222333336777766
Q ss_pred hcChhhHHHHHHHh-------hcccCChhHHHHHHHHHHHHHhch
Q 005727 386 LLDAERVYRELSTI-------LEGEADLDFACTMVQALNLILLTS 423 (680)
Q Consensus 386 ~L~~e~Iy~~La~i-------L~~~~Dl~F~~~mVq~Ln~iLLTa 423 (680)
.-..+..+..++++ +.+++|++.-+.|-|.|-+..=.+
T Consensus 491 ~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 491 NCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred cchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 65555555555544 445688888888888884444333
No 193
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=90.39 E-value=2.5 Score=48.66 Aligned_cols=98 Identities=19% Similarity=0.190 Sum_probs=69.9
Q ss_pred CCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCC-C--ChHHHHHHH
Q 005727 125 VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS-V--DYGRMAEIL 201 (680)
Q Consensus 125 ~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~-~--d~~~II~iL 201 (680)
..+...|.++=+.|+.+....+.-+..- -+++.-||+-+.++.+|||...++||..++..++..+. . ........+
T Consensus 385 ~~~~~lR~~aYe~lG~L~~~~p~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l 463 (501)
T PF13001_consen 385 SEDIELRSLAYETLGLLAKRAPSLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELL 463 (501)
T ss_pred cccHHHHHHHHHHHHHHHccCccccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 3456788888888888887655433222 56788888888999999999999999999998876554 1 223333333
Q ss_pred H-HhcCCCCHHHHHHHHHHHHHH
Q 005727 202 V-QRAASPDEFTRLTAITWINEF 223 (680)
Q Consensus 202 l-~~~~s~d~~irl~Al~WL~e~ 223 (680)
+ ....+....+|..|+.|....
T Consensus 464 ~~~~~~~~~~~~R~~avk~an~~ 486 (501)
T PF13001_consen 464 LLSYIQSEVRSCRYAAVKYANAC 486 (501)
T ss_pred HHhhccchhHHHHHHHHHHHHHh
Confidence 3 334444567999999999854
No 194
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=90.38 E-value=14 Score=44.98 Aligned_cols=89 Identities=17% Similarity=0.235 Sum_probs=66.3
Q ss_pred cHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC
Q 005727 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (680)
Q Consensus 111 ~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~ 190 (680)
-++..||.+..++.|+++.||+..+..+.+|..- ++..+=.+++=...-.+-|.+++||.-|.-+++.+++ .+.|
T Consensus 1003 m~d~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~---~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~--~~~P 1077 (1529)
T KOG0413|consen 1003 MTDRYIPMIAASLCDPSVIVRRQTIILLARLLQF---GIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQ--SEEP 1077 (1529)
T ss_pred HHHHhhHHHHHHhcCchHHHHHHHHHHHHHHHhh---hhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHh--hcCc
Confidence 3678999999999999999999999888877643 2233333333333335678999999999999999886 3456
Q ss_pred CCChHHHHHHHHHh
Q 005727 191 SVDYGRMAEILVQR 204 (680)
Q Consensus 191 ~~d~~~II~iLl~~ 204 (680)
..-+..+|++++..
T Consensus 1078 ~~f~~~FVe~i~~l 1091 (1529)
T KOG0413|consen 1078 NFFPLNFVEYIIAL 1091 (1529)
T ss_pred cchHHHHHHHHHHH
Confidence 66778888888753
No 195
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=90.36 E-value=2.6 Score=37.33 Aligned_cols=87 Identities=21% Similarity=0.271 Sum_probs=70.0
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHHHH
Q 005727 280 ILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVV 359 (680)
Q Consensus 280 iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~~~~F~~fm~ 359 (680)
.++.....+.++..++|-.++.-|..+.+... ......+.++..++..|+|+++=|-..|.+.|+.++.. +=+.+++
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~--~p~~vl~ 80 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR--HPDEVLP 80 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH--ChHHHHH
Confidence 44556667788899999999999999988876 34456789999999999999999999999999988842 2235888
Q ss_pred HHHHhhcccc
Q 005727 360 FLVHNFRVDN 369 (680)
Q Consensus 360 ~LL~lf~~d~ 369 (680)
.|++.|.+.+
T Consensus 81 ~L~~~y~~~~ 90 (92)
T PF10363_consen 81 ILLDEYADPS 90 (92)
T ss_pred HHHHHHhCcc
Confidence 8888887653
No 196
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=90.21 E-value=1.2 Score=39.37 Aligned_cols=84 Identities=18% Similarity=0.321 Sum_probs=63.1
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchH
Q 005727 157 LDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYA 236 (680)
Q Consensus 157 L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp 236 (680)
++..+..+.||.+-||..+-..|..+++.=. .+..+.+.++.+++..++++|+.|=+.|+.-+..++...|..
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~------ 77 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDE------ 77 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHH------
Confidence 4556678899999999988777777765221 133578999999999999999999999999998887776643
Q ss_pred hHHHHHhhhhcC
Q 005727 237 DILGAILPCISD 248 (680)
Q Consensus 237 ~LLp~LL~~Lsd 248 (680)
++|.++..-.+
T Consensus 78 -vl~~L~~~y~~ 88 (92)
T PF10363_consen 78 -VLPILLDEYAD 88 (92)
T ss_pred -HHHHHHHHHhC
Confidence 55555554443
No 197
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.05 E-value=50 Score=39.66 Aligned_cols=183 Identities=17% Similarity=0.221 Sum_probs=111.9
Q ss_pred chHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhh
Q 005727 234 YYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTE 313 (680)
Q Consensus 234 fLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~ 313 (680)
....+.|-+-.|+.+..+.+--.|.++...+-.. ..-.+.+.+.+|.--+.+.....|-+|.+.|..++...|..
T Consensus 242 ~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~-----~~r~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~ 316 (865)
T KOG1078|consen 242 ADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNT-----NSRELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA 316 (865)
T ss_pred chhhHHHHHHHHHhchhHHHHHHHHHHHhhcccc-----CHhhcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc
Confidence 3445556666777776655544443333222111 11123457788888889999999999999999999999887
Q ss_pred HhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh--hccchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcChh-
Q 005727 314 VLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA--KDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAE- 390 (680)
Q Consensus 314 ~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is--~~~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~e- 390 (680)
+..-..++= +..+|..-.+-.-+..+|-+=+ ++..-+.+-+.....-+.++-+. -.---||-||.+.+-+
T Consensus 317 v~~cN~elE----~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKi---vvvdai~sLc~~fp~k~ 389 (865)
T KOG1078|consen 317 VTVCNLDLE----SLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKI---VVVDAIRSLCLKFPRKH 389 (865)
T ss_pred ccccchhHH----hhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceE---EeHHHHHHHHhhccHHH
Confidence 765444432 2334555444444444444433 12223333333444444444332 1233588999988873
Q ss_pred -hHHHHHHHhhcccCChhHHHHHHHHHHHHHhchHHHHH
Q 005727 391 -RVYRELSTILEGEADLDFACTMVQALNLILLTSSELSE 428 (680)
Q Consensus 391 -~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTa~EL~~ 428 (680)
..-..++++|..+..++|-+.+|.++-.|.--.++-.+
T Consensus 390 ~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe 428 (865)
T KOG1078|consen 390 TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE 428 (865)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh
Confidence 45667788888888899999999999888765554433
No 198
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=89.95 E-value=11 Score=40.64 Aligned_cols=186 Identities=18% Similarity=0.174 Sum_probs=95.8
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHhcCcc---cccch----HhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCC
Q 005727 200 ILVQRAASPDEFTRLTAITWINEFVKLGGDQ---LVPYY----ADILGAILPCISDKEEKIRVVARETNEELRAIKADPA 272 (680)
Q Consensus 200 iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~---l~pfL----p~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~ 272 (680)
-++..+ ++++.+...++.-+.+++...+.. +..+. +.....+++.+..++.-|...|......++.......
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~ 140 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS 140 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc
Confidence 444444 567888888999999988776632 12111 1245667777777788899888887775544332211
Q ss_pred CC---CChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhc-----CCCCHH--HH---HH
Q 005727 273 DG---FDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKAL-----SDPSDE--VV---LL 339 (680)
Q Consensus 273 ~~---ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~L-----sD~s~e--V~---~~ 339 (680)
.. -.++.+++.+...+.+++......|+.-+..+.........=.-.+.++.+.+.| .+.... +. -.
T Consensus 141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll 220 (312)
T PF03224_consen 141 EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALL 220 (312)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence 11 1234555666666665555566888888888886654443333377778888777 222221 11 13
Q ss_pred HHHHHHH---Hhh--ccchHHHHHHHHHHhhcccchhHHhHHHH-HHHHHHhhcCh
Q 005727 340 VLEVHAC---IAK--DLQHFRQLVVFLVHNFRVDNSLLEKRGAL-IIRRLCVLLDA 389 (680)
Q Consensus 340 al~lLa~---Is~--~~~~F~~fm~~LL~lf~~d~~lLe~rg~~-IIrqLc~~L~~ 389 (680)
++|+|+- +++ ...+ +++.|.+.+++..|.-=.|..+ ++|+|...-..
T Consensus 221 ~lWlLSF~~~~~~~~~~~~---~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~ 273 (312)
T PF03224_consen 221 CLWLLSFEPEIAEELNKKY---LIPLLADILKDSIKEKVVRVSLAILRNLLSKAPK 273 (312)
T ss_dssp HHHHHTTSHHHHHHHHTTS---HHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSST
T ss_pred HHHHHhcCHHHHHHHhccc---hHHHHHHHHHhcccchHHHHHHHHHHHHHhccHH
Confidence 4466652 221 1233 6666666666654422234443 66666655443
No 199
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.77 E-value=5.8 Score=48.53 Aligned_cols=109 Identities=23% Similarity=0.227 Sum_probs=70.7
Q ss_pred HHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCc-hhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC---
Q 005727 116 IPLLRERMNV-LNPYVRQFLVGWITVLDSVPD-IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP--- 190 (680)
Q Consensus 116 IP~L~e~i~~-~np~vR~~avswI~~L~sip~-~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~--- 190 (680)
|-.-++-+++ +.|-.||+++-+++.|=.-.+ .-..--=..--+.|...++|+.+|||.+|.-+|+.|+....+..
T Consensus 601 i~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~ 680 (1387)
T KOG1517|consen 601 IGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQ 680 (1387)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchh
Confidence 3444555566 479999999999998743222 11111222335678889999999999999999999998642211
Q ss_pred ------CC-------ChHHHHH----HHHHhcCCCCHHHHHHHHHHHHHHH
Q 005727 191 ------SV-------DYGRMAE----ILVQRAASPDEFTRLTAITWINEFV 224 (680)
Q Consensus 191 ------~~-------d~~~II~----iLl~~~~s~d~~irl~Al~WL~e~~ 224 (680)
.+ ..++++. -++...++..+.+|.+....+.+++
T Consensus 681 ~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~ 731 (1387)
T KOG1517|consen 681 TLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFV 731 (1387)
T ss_pred hhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 01 1344444 4555666777778877777777664
No 200
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.67 E-value=20 Score=42.01 Aligned_cols=162 Identities=14% Similarity=0.078 Sum_probs=96.6
Q ss_pred HhHHHHHhhhhcC----CchhHHHHHHHHHHHHHHh-ccCC--------CCCCChHhHHHHHHHhcC----CCcHHHHHH
Q 005727 236 ADILGAILPCISD----KEEKIRVVARETNEELRAI-KADP--------ADGFDVGPILSIATRQLS----SEWEATRIE 298 (680)
Q Consensus 236 p~LLp~LL~~Lsd----s~~eIR~~A~~~n~~Ll~~-v~~~--------~~~ldl~~iL~vL~~~L~----~~~~~tR~a 298 (680)
++++..++..+.. .++.++..|.-+.+.+..- +... ......+.+++.+..++. ..+...++.
T Consensus 430 ~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 509 (618)
T PF01347_consen 430 EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIV 509 (618)
T ss_dssp HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHH
Confidence 4555555554443 3567888887777766543 2221 112223455555555554 455678888
Q ss_pred HHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhcccchhHHhH
Q 005727 299 ALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDP---SDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKR 375 (680)
Q Consensus 299 aL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~---s~eV~~~al~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~r 375 (680)
+|+.||.+.. +..++.|++.+.+. +..+|..|+++|.++.. ..=+.+-..++..|.+...--|-|
T Consensus 510 ~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~--~~~~~v~~~l~~I~~n~~e~~EvR 577 (618)
T PF01347_consen 510 YLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAK--HCPEKVREILLPIFMNTTEDPEVR 577 (618)
T ss_dssp HHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGG--T-HHHHHHHHHHHHH-TTS-HHHH
T ss_pred HHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhh--cCcHHHHHHHHHHhcCCCCChhHH
Confidence 8898888753 35677777777776 67888899999998863 344577788888887766655666
Q ss_pred HHHHHHHHHhhcChhhHHHHHHHhhcccCChhHHH
Q 005727 376 GALIIRRLCVLLDAERVYRELSTILEGEADLDFAC 410 (680)
Q Consensus 376 g~~IIrqLc~~L~~e~Iy~~La~iL~~~~Dl~F~~ 410 (680)
.+- +-.|=..-++..+...++..+..|.+..+.+
T Consensus 578 iaA-~~~lm~~~P~~~~l~~i~~~l~~E~~~QV~s 611 (618)
T PF01347_consen 578 IAA-YLILMRCNPSPSVLQRIAQSLWNEPSNQVAS 611 (618)
T ss_dssp HHH-HHHHHHT---HHHHHHHHHHHTT-S-HHHHH
T ss_pred HHH-HHHHHhcCCCHHHHHHHHHHHhhCchHHHHH
Confidence 443 3344444466888999999998888765443
No 201
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=89.63 E-value=41 Score=38.06 Aligned_cols=272 Identities=14% Similarity=0.127 Sum_probs=142.0
Q ss_pred HHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCCchhhhh
Q 005727 74 IFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVL-NPYVRQFLVGWITVLDSVPDIDMLG 151 (680)
Q Consensus 74 Ifd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~-np~vR~~avswI~~L~sip~~~Li~ 151 (680)
.+....+++..+|.-+...| ..|..++..-........++.+..-+...+... +......++.++..+...++--..-
T Consensus 102 ~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f 181 (429)
T cd00256 102 TWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAF 181 (429)
T ss_pred chHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHH
Confidence 44555556665666555555 666665431111111223455666666666543 4677888888998887777633222
Q ss_pred chHHHHHHHHHhcCCCC--hhHHHHHHHHHHHH--HHHhhcCCCCChHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHh
Q 005727 152 FLPDFLDGLFNMLSDSS--HEIRQQADSALWEF--LQEIKNSPSVDYGRMAEILVQRAASPD-EFTRLTAITWINEFVKL 226 (680)
Q Consensus 152 ~Lp~~L~~Lf~lLsD~~--~dVR~~a~~~L~~f--L~ei~~~~~~d~~~II~iLl~~~~s~d-~~irl~Al~WL~e~~~l 226 (680)
.=...++.|..++.-.. ....-.+.-|+=.+ -.+... ...-.++|+.++.-++... |-|-..++..+..++..
T Consensus 182 ~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~--~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 182 VLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAE--VLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISK 259 (429)
T ss_pred HHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHH--hhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhc
Confidence 11224556666664322 23333333332211 111111 1112457777777665443 44545566677777765
Q ss_pred cCcc--cccchHhHH----HHHhhhhc---CCchhHHHHHHHHHHHHHHhccC-------------------C---CCC-
Q 005727 227 GGDQ--LVPYYADIL----GAILPCIS---DKEEKIRVVARETNEELRAIKAD-------------------P---ADG- 274 (680)
Q Consensus 227 ~~~~--l~pfLp~LL----p~LL~~Ls---ds~~eIR~~A~~~n~~Ll~~v~~-------------------~---~~~- 274 (680)
+... -..+.+.++ +.++..|. .+|+|+.+.-....+.+-+.+.+ + .+.
T Consensus 260 ~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~F 339 (429)
T cd00256 260 RVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKF 339 (429)
T ss_pred ccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchH
Confidence 3211 112223333 23344444 45677665543332222221111 0 000
Q ss_pred -------C--ChHhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChhhH--hhhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 005727 275 -------F--DVGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEV--LHFLNDIFDTLLKALSDPSDEVVLLVLE 342 (680)
Q Consensus 275 -------l--dl~~iL~vL~~~L~-~~~~~tR~aaL~WL~~L~~~~p~~~--~~~l~~l~p~LL~~LsD~s~eV~~~al~ 342 (680)
+ +=-+++..|.+.+. +.+..+---|..=+|.+++..|.+- ..-+. .=..+++.+++++++|+..|+.
T Consensus 340 W~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg-~K~~vM~Lm~h~d~~Vr~eAL~ 418 (429)
T cd00256 340 WRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLG-GKQRVMRLLNHEDPNVRYEALL 418 (429)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcC-cHHHHHHHhcCCCHHHHHHHHH
Confidence 0 11367788888884 3334444445567899999988753 22222 2346888899999999999999
Q ss_pred HHHHHh
Q 005727 343 VHACIA 348 (680)
Q Consensus 343 lLa~Is 348 (680)
++.++-
T Consensus 419 avQklm 424 (429)
T cd00256 419 AVQKLM 424 (429)
T ss_pred HHHHHH
Confidence 888764
No 202
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=89.32 E-value=24 Score=39.99 Aligned_cols=196 Identities=14% Similarity=0.171 Sum_probs=93.1
Q ss_pred HHHHHHHHhhcCCchhhhhchHHHHHHHHHhc---CC--CChhHHHHHHHHHHHHHHHhhcCCCCC----h-HHHHHHHH
Q 005727 133 FLVGWITVLDSVPDIDMLGFLPDFLDGLFNML---SD--SSHEIRQQADSALWEFLQEIKNSPSVD----Y-GRMAEILV 202 (680)
Q Consensus 133 ~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lL---sD--~~~dVR~~a~~~L~~fL~ei~~~~~~d----~-~~II~iLl 202 (680)
+++.++-++..+.+.++.++.+.+++.|..++ ++ +||.--.-.-++++.+++-.... +.+ + +.+.|.+.
T Consensus 45 ylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~-~~~~v~~~E~~L~P~f~ 123 (435)
T PF03378_consen 45 YLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA-DPEAVSQFEEALFPPFQ 123 (435)
T ss_dssp HHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG-GHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC-ChhHHHHHHHHHHHHHH
Confidence 34444544545555556666666666665443 22 23333333444455554433211 111 1 12223322
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHhcC-cccccchHhHHHHHhhhhc-CCchhHHHHHHHHHHHHHHhcc-CCCCCCChHh
Q 005727 203 QRAASPDEFTRLTAITWINEFVKLGG-DQLVPYYADILGAILPCIS-DKEEKIRVVARETNEELRAIKA-DPADGFDVGP 279 (680)
Q Consensus 203 ~~~~s~d~~irl~Al~WL~e~~~l~~-~~l~pfLp~LLp~LL~~Ls-ds~~eIR~~A~~~n~~Ll~~v~-~~~~~ldl~~ 279 (680)
.-++..-.+.-=.+..-++.+++..+ ..+-+..-.++|.++.-.. +....|- ...+....+++-.. .-...-.+.+
T Consensus 124 ~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniP-alvrLL~a~i~k~~~~i~~~~~l~~ 202 (435)
T PF03378_consen 124 EILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIP-ALVRLLQAYIKKDPSFIVANNQLEP 202 (435)
T ss_dssp HHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHH-HHHHHHHHHHHHHGGG----S-CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcC-cHHHHHHHHHHhCchhhcchhhHHH
Confidence 22222111111223344445555554 3444444455555544222 2222332 11222222211111 0111234789
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhh-HhhhhHHHHHHHHHhcCCC
Q 005727 280 ILSIATRQLSSEWEATRIEALHWISTLLNRHRTE-VLHFLNDIFDTLLKALSDP 332 (680)
Q Consensus 280 iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~-~~~~l~~l~p~LL~~LsD~ 332 (680)
++++..+.+.+... -..+.+.|..+.+.+|.+ +.+|++.++..++..|...
T Consensus 203 iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~s 254 (435)
T PF03378_consen 203 ILGVFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSS 254 (435)
T ss_dssp HHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 99998888876542 245889999999999985 7999999999999888754
No 203
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.18 E-value=20 Score=42.50 Aligned_cols=152 Identities=17% Similarity=0.175 Sum_probs=99.0
Q ss_pred hhhhhhhH-HHHhhccCCCCHHHHHHHHHHHHHHHHhhccch-----hhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHH
Q 005727 27 ETILQQIV-PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF-----IIFFNQIFDALCKLSADSDANVQSAA-HLLDRL 99 (680)
Q Consensus 27 ~~yL~~Iv-~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~i-----l~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrl 99 (680)
++-+-.+. |-+.+++.-+++.||--|++-+.+.-.+...+. -..+..=|..|.+++.|+-++||+.| ..+.+.
T Consensus 168 eeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~ 247 (1005)
T KOG1949|consen 168 EEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKI 247 (1005)
T ss_pred HHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 34444455 566899999999999999999888654332211 12344556778889999999999999 665554
Q ss_pred HHHHhhccccccHhhhHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHH
Q 005727 100 VKDIVTESDQFSIEEFIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSA 178 (680)
Q Consensus 100 lkdiv~es~~f~L~~fIP~L~e~i~-~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~ 178 (680)
.-..=.--+.--+..++..+..-+. +....||-.....++.+...|-. .+.+..+|+.|=-.|.|++..||.++-..
T Consensus 248 ~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~s--h~~le~~Lpal~~~l~D~se~VRvA~vd~ 325 (1005)
T KOG1949|consen 248 TSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLS--HPLLEQLLPALRYSLHDNSEKVRVAFVDM 325 (1005)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccc--hhHHHHHHHhcchhhhccchhHHHHHHHH
Confidence 3211100011112223333333332 55679999999999988877753 34566677777788999999999886554
Q ss_pred HH
Q 005727 179 LW 180 (680)
Q Consensus 179 L~ 180 (680)
|-
T Consensus 326 ll 327 (1005)
T KOG1949|consen 326 LL 327 (1005)
T ss_pred HH
Confidence 43
No 204
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.04 E-value=1.4 Score=50.39 Aligned_cols=58 Identities=12% Similarity=0.080 Sum_probs=47.8
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChh
Q 005727 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHE 170 (680)
Q Consensus 113 ~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~d 170 (680)
..-+..|-..+++.+.+|||.|+-.++.+..-...++-+..-.+.+.+-+...|.+.+
T Consensus 620 ~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe~ 677 (926)
T COG5116 620 KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHES 677 (926)
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhHh
Confidence 4457777788899999999999999997776666678888888999888888887654
No 205
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=88.60 E-value=7.4 Score=42.64 Aligned_cols=143 Identities=18% Similarity=0.337 Sum_probs=96.5
Q ss_pred chhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhccccccHhhhHHHHHHHhcCC-------CHHHHHHHHHHH
Q 005727 66 DFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVL-------NPYVRQFLVGWI 138 (680)
Q Consensus 66 ~il~~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~-------np~vR~~avswI 138 (680)
+...||.+|..++. +.+...|..| |.. +-++++ +..++|-+..++.+. |-..=..++..+
T Consensus 175 Elq~yf~~It~a~~----~~~~~~r~~a--L~s----L~tD~g---l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v 241 (343)
T cd08050 175 ELQLYFEEITEALV----GSNEEKRREA--LQS----LRTDPG---LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMV 241 (343)
T ss_pred HHHHHHHHHHHHHh----CCCHHHHHHH--HHH----hccCCC---chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 45567777777754 3444445444 333 333433 666777777777632 555666678888
Q ss_pred HHhhcCCchhhhhchHHHHHHHHHhc----------CCCChhHHHHHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHhcCC
Q 005727 139 TVLDSVPDIDMLGFLPDFLDGLFNML----------SDSSHEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAAS 207 (680)
Q Consensus 139 ~~L~sip~~~Li~~Lp~~L~~Lf~lL----------sD~~~dVR~~a~~~L~~fL~ei~~~~~~d-~~~II~iLl~~~~s 207 (680)
..|..-|...+-+|+-.+++.++.++ .|.+-.+|..|++++..+++..... ... .+.++..+...+.+
T Consensus 242 ~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~-y~~l~~ri~~tl~k~l~d 320 (343)
T cd08050 242 RALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTS-YNTLQPRITRTLLKALLD 320 (343)
T ss_pred HHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHHcC
Confidence 88999999999999999999998776 2233479999999999999877543 223 36677777777776
Q ss_pred CC-HH-HHHHHHHHHHH
Q 005727 208 PD-EF-TRLTAITWINE 222 (680)
Q Consensus 208 ~d-~~-irl~Al~WL~e 222 (680)
+. +. ....|+.-+..
T Consensus 321 ~~~~~~~~YGAi~GL~~ 337 (343)
T cd08050 321 PKKPLTTHYGAIVGLSA 337 (343)
T ss_pred CCCCcchhhHHHHHHHH
Confidence 54 22 35666665553
No 206
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.37 E-value=1.3e+02 Score=42.16 Aligned_cols=278 Identities=15% Similarity=0.120 Sum_probs=147.9
Q ss_pred hhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhc-cchhhhHHHHHHHHHHhhcCCChhHHHHHHHH-HHHHHHHhh
Q 005727 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVR-GDFIIFFNQIFDALCKLSADSDANVQSAAHLL-DRLVKDIVT 105 (680)
Q Consensus 28 ~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~-~~il~~f~eIfd~L~kL~aD~d~~Vr~gA~~L-drllkdiv~ 105 (680)
+-...+.+....+-.|+.+.-|+..|.++.-+..... -..+.+--++++++.-.+.|....+.+|+..+ -..++++..
T Consensus 1029 pi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~ 1108 (3550)
T KOG0889|consen 1029 PMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILR 1108 (3550)
T ss_pred chHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHH
Confidence 4455677777777888888888877766544322211 12233445667777766788888888877322 223333332
Q ss_pred c--------c-ccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCC--ChhHHHH
Q 005727 106 E--------S-DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDS--SHEIRQQ 174 (680)
Q Consensus 106 e--------s-~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~--~~dVR~~ 174 (680)
. . .......++-.+...+-++|+.||.++...+..+....+.+ .++++..+++.+.-| ....|..
T Consensus 1109 ~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s~~~----v~~L~~p~K~~ll~p~f~k~lr~~ 1184 (3550)
T KOG0889|consen 1109 VIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELSGKS----VVKLLEPFKDVLLSPIFKKPLRAL 1184 (3550)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHcCCc----HHHHHHHHHHHHhccccccccccC
Confidence 1 1 12233334444444555788899999999999988776543 344555555544221 1233322
Q ss_pred H----HHHHHHHHHHhhcCCC-CChHHHHHHH---HHhcCCC---------------CH----HHHHHHHHHHHHHHHhc
Q 005727 175 A----DSALWEFLQEIKNSPS-VDYGRMAEIL---VQRAASP---------------DE----FTRLTAITWINEFVKLG 227 (680)
Q Consensus 175 a----~~~L~~fL~ei~~~~~-~d~~~II~iL---l~~~~s~---------------d~----~irl~Al~WL~e~~~l~ 227 (680)
. ...++.+.--+-..+. .++...+-.+ ...+.+. +. ..|..|++.+.+.+...
T Consensus 1185 p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~ 1264 (3550)
T KOG0889|consen 1185 PFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLS 1264 (3550)
T ss_pred CHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcc
Confidence 1 1112222111111121 2322211111 1111111 11 12566666666555443
Q ss_pred C---cccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCCh---HhHHHHHHHhcCCCcHHHHHHHHH
Q 005727 228 G---DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV---GPILSIATRQLSSEWEATRIEALH 301 (680)
Q Consensus 228 ~---~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl---~~iL~vL~~~L~~~~~~tR~aaL~ 301 (680)
+ ....+|.++++.++++.|--..+|+-++|..+....... ...+.. ...+..+...+.|-.- .=++++.
T Consensus 1265 d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~----~~~~~ke~lq~~lrplL~~l~d~~~-lsv~~l~ 1339 (3550)
T KOG0889|consen 1265 DFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGLRKVLAQ----DVKLPKELLQSHLRPLLMNLSDHNN-LSVPGLE 1339 (3550)
T ss_pred cccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhhc----cccccHHHHHhhHHHHHHhhhHhhh-hhHHHHH
Confidence 3 356789999999999999999999998887765432211 111222 2333334444433221 4466778
Q ss_pred HHHHHHhhChhhH
Q 005727 302 WISTLLNRHRTEV 314 (680)
Q Consensus 302 WL~~L~~~~p~~~ 314 (680)
|+.-+.+..+.-+
T Consensus 1340 ~ls~l~~ll~~~f 1352 (3550)
T KOG0889|consen 1340 GLSRLLRLLINYF 1352 (3550)
T ss_pred HHHHHHHHHHHHH
Confidence 8887777765533
No 207
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=87.78 E-value=52 Score=36.94 Aligned_cols=242 Identities=15% Similarity=0.153 Sum_probs=129.2
Q ss_pred hhhhh-hhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhh
Q 005727 27 ETILQ-QIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVT 105 (680)
Q Consensus 27 ~~yL~-~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkdiv~ 105 (680)
.+|++ .++..++..|..+|+|-|.+..+.+.+|-....+.-.-....+-+.+.+.+.+++.. +|...+=.++..|+.
T Consensus 127 ~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~--~gI~elLeil~sii~ 204 (409)
T PF01603_consen 127 KKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERH--NGIAELLEILGSIIN 204 (409)
T ss_dssp TTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS----STHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccc--cCHHHHHHHHHHHHh
Confidence 34655 678999999999999999999998888743322211111233444444444433321 122111112222221
Q ss_pred ccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q 005727 106 ESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (680)
Q Consensus 106 es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~e 185 (680)
.- -.++ .+.-+.+....+--|.+.+ +++.|.+.|. .|+..|+..
T Consensus 205 gf--------~~pl-------k~eh~~fl~~vllPLh~~~------~~~~y~~~L~---------------~~~~~f~~k 248 (409)
T PF01603_consen 205 GF--------AVPL-------KEEHKQFLRKVLLPLHKSP------HLSSYHQQLS---------------YCVVQFLEK 248 (409)
T ss_dssp T----------SS---------HHHHHHHHHTTGGGGGST------GGGGTHHHHH---------------HHHHHHHHH
T ss_pred cc--------CCCC-------cHHHHHHHHHHHHHHhcCC------cHHHHHHHHH---------------HHHHHHHHh
Confidence 10 0000 1223333333332233222 3333333333 233334321
Q ss_pred hhcCCCC-ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh-cCcccccchHhHHHHHhhhhcCCchhHHHHHHHH--H
Q 005727 186 IKNSPSV-DYGRMAEILVQRAASPDEFTRLTAITWINEFVKL-GGDQLVPYYADILGAILPCISDKEEKIRVVARET--N 261 (680)
Q Consensus 186 i~~~~~~-d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l-~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~--n 261 (680)
++ -...++..|+.+--..+..-...-+.=+.+++.. ++..+.+..+.+...+-.|++..+..|.+.|... |
T Consensus 249 -----dp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n 323 (409)
T PF01603_consen 249 -----DPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN 323 (409)
T ss_dssp ------GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS
T ss_pred -----CchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC
Confidence 11 1344556666665555554444445555555553 4567788888999999999999998887777653 4
Q ss_pred HHHHHhccCCCCCCChHhHHHHHHHhc-----CCCcHHHHHHHHHHHHHHHhhChhhHhh
Q 005727 262 EELRAIKADPADGFDVGPILSIATRQL-----SSEWEATRIEALHWISTLLNRHRTEVLH 316 (680)
Q Consensus 262 ~~Ll~~v~~~~~~ldl~~iL~vL~~~L-----~~~~~~tR~aaL~WL~~L~~~~p~~~~~ 316 (680)
..+..++.+. -..+++++...+ .|++..+|..|...+..+.+.+|+-+..
T Consensus 324 ~~~~~li~~~-----~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~ 378 (409)
T PF01603_consen 324 EYFLSLISQN-----SRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDK 378 (409)
T ss_dssp HHHHHHHHCT-----HHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHhC-----hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 4566666431 234555544443 3677779999999999999988765544
No 208
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=87.65 E-value=51 Score=36.63 Aligned_cols=154 Identities=16% Similarity=0.156 Sum_probs=86.0
Q ss_pred chHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC---CCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC
Q 005727 152 FLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS---PSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG 228 (680)
Q Consensus 152 ~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~---~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~ 228 (680)
.+..+.+.+..++-+.+++||.++-+++.-++..-... ...+++.+|-.-+.+-+ .++.-|..|+.-++.|+++.+
T Consensus 22 ~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~-~~~~ER~QALkliR~~l~~~~ 100 (371)
T PF14664_consen 22 VLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDN-KNDVEREQALKLIRAFLEIKK 100 (371)
T ss_pred hHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccC-CChHHHHHHHHHHHHHHHhcC
Confidence 45555666654444444999999988887776422110 01122222222222211 235568899999999999843
Q ss_pred cccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q 005727 229 DQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLN 308 (680)
Q Consensus 229 ~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~ 308 (680)
. ...+-..++..|.....+.++..|.+|.++.-++.-.-.+ -+--..-+.+|.+.+.++....-++.+.++..+.+
T Consensus 101 ~-~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd 176 (371)
T PF14664_consen 101 G-PKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD 176 (371)
T ss_pred C-cccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC
Confidence 1 1122346777888888888889999998887664321100 00001123344444443333356666677776666
Q ss_pred hC
Q 005727 309 RH 310 (680)
Q Consensus 309 ~~ 310 (680)
.-
T Consensus 177 ~p 178 (371)
T PF14664_consen 177 SP 178 (371)
T ss_pred Cc
Confidence 53
No 209
>PF05536 Neurochondrin: Neurochondrin
Probab=87.64 E-value=64 Score=37.75 Aligned_cols=159 Identities=12% Similarity=0.085 Sum_probs=111.0
Q ss_pred ccHhhhHHHHHHHhcCCCH-HHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhc
Q 005727 110 FSIEEFIPLLRERMNVLNP-YVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKN 188 (680)
Q Consensus 110 f~L~~fIP~L~e~i~~~np-~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~ 188 (680)
..+-.-||.|.+.+..... .+-.-+++++..+.+.|+..-.-.=..-++.|+..+.+ ++-....+..++..++.....
T Consensus 94 ~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~ 172 (543)
T PF05536_consen 94 PQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQ 172 (543)
T ss_pred HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcch
Confidence 4466779999999987776 89999999999999887744222223455566666655 556677777788777776542
Q ss_pred CC----CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCc------ccccchHhHHHHHhhhhcCC-chhHHHHH
Q 005727 189 SP----SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD------QLVPYYADILGAILPCISDK-EEKIRVVA 257 (680)
Q Consensus 189 ~~----~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~------~l~pfLp~LLp~LL~~Lsds-~~eIR~~A 257 (680)
.. ...+..+++.+-..........+.++++-++.|..-.+. .--.+.+.+..+|-..+... .++-|..|
T Consensus 173 ~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~a 252 (543)
T PF05536_consen 173 KSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPA 252 (543)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 21 124567777777777776777888999999988766531 11236777777777777643 67889988
Q ss_pred HHHHHHHHHhcc
Q 005727 258 RETNEELRAIKA 269 (680)
Q Consensus 258 ~~~n~~Ll~~v~ 269 (680)
...-..+++..+
T Consensus 253 l~Laa~Ll~~~G 264 (543)
T PF05536_consen 253 LNLAASLLDLLG 264 (543)
T ss_pred HHHHHHHHHHhC
Confidence 888888877754
No 210
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=87.32 E-value=8.1 Score=45.50 Aligned_cols=137 Identities=12% Similarity=0.141 Sum_probs=93.5
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCCh-HhHH
Q 005727 203 QRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV-GPIL 281 (680)
Q Consensus 203 ~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl-~~iL 281 (680)
..++-.+++.|..-..-|.+-++.-++++. ..+++|.++..+...+ ++.....-+++....... -+| ..++
T Consensus 261 eel~lks~~eK~~Ff~~L~~~l~~~pe~i~--~~kvlp~Ll~~~~~g~-----a~~~~ltpl~k~~k~ld~-~eyq~~i~ 332 (690)
T KOG1243|consen 261 EELRLKSVEEKQKFFSGLIDRLDNFPEEII--ASKVLPILLAALEFGD-----AASDFLTPLFKLGKDLDE-EEYQVRII 332 (690)
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhhccc-----cchhhhhHHHHhhhhccc-cccccchh
Confidence 344445555555444444443344444444 4578888888888765 333444444444332111 113 3588
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005727 282 SIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (680)
Q Consensus 282 ~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~ 349 (680)
+.|.+.+......+|.-=|.-+-.+.+..++.+ ..+.+||.+...+.|.++.+|..++..+..+++
T Consensus 333 p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~--~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 333 PVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQI--LNDQIFPHVALGFLDTNATLREQTLKSMAVLAP 398 (690)
T ss_pred hhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHh--hcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 999999999999999988888877777766553 357899999999999999999999999888873
No 211
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.94 E-value=27 Score=44.79 Aligned_cols=154 Identities=18% Similarity=0.100 Sum_probs=100.5
Q ss_pred HhhhHHHHHH-HhcCCCHHHHHHHHHHHHHhh-cCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC
Q 005727 112 IEEFIPLLRE-RMNVLNPYVRQFLVGWITVLD-SVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS 189 (680)
Q Consensus 112 L~~fIP~L~e-~i~~~np~vR~~avswI~~L~-sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~ 189 (680)
.+.|+..+.. -..+.++.+|..+++-+..+. +..-...-...+++..-++.++.|..-+||++|+.+|..+++.-+.
T Consensus 1524 ~~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~- 1602 (1710)
T KOG1851|consen 1524 QPEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKF- 1602 (1710)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccc-
Confidence 4556666663 333567899988888777432 1111123356679999999999999999999999999999874321
Q ss_pred CCCChHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHh
Q 005727 190 PSVDYGRMAEILVQRAASP--DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAI 267 (680)
Q Consensus 190 ~~~d~~~II~iLl~~~~s~--d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~ 267 (680)
...++.........++. ++.....|...++.++-.-|-++=-|+|+.+..+-....++ .-++.++.++..++.+.
T Consensus 1603 --~~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrt 1679 (1710)
T KOG1851|consen 1603 --QFVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRT 1679 (1710)
T ss_pred --ccchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHH
Confidence 12233444444443332 34456777778888877766665557777777666555555 56788888887776655
Q ss_pred cc
Q 005727 268 KA 269 (680)
Q Consensus 268 v~ 269 (680)
-.
T Consensus 1680 h~ 1681 (1710)
T KOG1851|consen 1680 HA 1681 (1710)
T ss_pred hh
Confidence 43
No 212
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=86.85 E-value=11 Score=45.57 Aligned_cols=234 Identities=14% Similarity=0.144 Sum_probs=138.0
Q ss_pred HHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCC--ChHHHHHHHHHhcCC-CC
Q 005727 133 FLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV--DYGRMAEILVQRAAS-PD 209 (680)
Q Consensus 133 ~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~--d~~~II~iLl~~~~s-~d 209 (680)
-+++..+.|.-.....+-.+..+||.-+-++|.+++++++..++.++..|...-++.+.. .++.+++..-+-+.+ ++
T Consensus 75 Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~~~ 154 (819)
T KOG1877|consen 75 IAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHERGD 154 (819)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhcccc
Confidence 355666666666666677778899999999999999999999999999998655544333 467888877776665 33
Q ss_pred HHH----------HHHHHHHHHHHHHhcCccccc-chHhHHHHHhhhhcCCc--------hhH----HHH--------HH
Q 005727 210 EFT----------RLTAITWINEFVKLGGDQLVP-YYADILGAILPCISDKE--------EKI----RVV--------AR 258 (680)
Q Consensus 210 ~~i----------rl~Al~WL~e~~~l~~~~l~p-fLp~LLp~LL~~Lsds~--------~eI----R~~--------A~ 258 (680)
+.. -+.++.|..++.++.+..--+ +...++|.++..|+..+ .++ +.. +.
T Consensus 155 ~~~~~~lr~agl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~~~e~~~~~~S~s~~~~~~~~~a~~~~~~p~v 234 (819)
T KOG1877|consen 155 DDMKDCLRAAGLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLFELQSIENLGKRESDSRIRTFSLLAAGDKTSDPKV 234 (819)
T ss_pred hhhhhhccHhhhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHHhhcchhhcccccCcccccCccccccCCcccCcch
Confidence 322 255677998887776543333 47778888777776432 111 000 11
Q ss_pred HHHHHHHHhccCCCCCCChHhHHHHHHHhcC-CCcHHHH--HHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhc-CCCCH
Q 005727 259 ETNEELRAIKADPADGFDVGPILSIATRQLS-SEWEATR--IEALHWISTLLNRHRTEVLHFLNDIFDTLLKAL-SDPSD 334 (680)
Q Consensus 259 ~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~-~~~~~tR--~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~L-sD~s~ 334 (680)
-+...+.++.+....+.++..+++-|..++. +.-|.+- .++--|=..++-..+......+.+++-.|...- ..+.+
T Consensus 235 la~~cl~~l~~~A~~g~~iR~~l~pl~~~~d~h~~w~p~n~fav~~~~~vi~~iq~q~s~~v~~~li~hLd~~~~~~~~~ 314 (819)
T KOG1877|consen 235 LAERCLRELLGRAKFGTNIRNALKPLLSHLDFHELWTPPNGFAVHVFKIVIYLIQRQYSYFVIQELINHLDNKKLVAKKP 314 (819)
T ss_pred hHHHHHHHhhccccccchHHHHHHHHHhccccceeecCCCccchHHHHHHHHHHhhccchHHHHHHHHHHHhhcccccCc
Confidence 1222233444443445567888887777764 4445433 444445555554555555555677777776443 44444
Q ss_pred HHHH----HHHHHHHHHhhccchHHHHHHHHHHhhcc
Q 005727 335 EVVL----LVLEVHACIAKDLQHFRQLVVFLVHNFRV 367 (680)
Q Consensus 335 eV~~----~al~lLa~Is~~~~~F~~fm~~LL~lf~~ 367 (680)
+... .+.-+++.. +-.++.-.+...+++++++
T Consensus 315 r~~~~iv~~~~~~i~~~-~v~ps~l~i~n~l~rhLR~ 350 (819)
T KOG1877|consen 315 RLGLSIVLVSIALIAAT-SVGPSVLIIFNDLLRHLRK 350 (819)
T ss_pred cccchhHHHHHHHHHhc-ccchHHHHHHHHHHHHHHh
Confidence 4332 222233322 2234444555666665543
No 213
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=86.68 E-value=78 Score=43.06 Aligned_cols=252 Identities=15% Similarity=0.114 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhH-HHHhhccCCCCHHHHHHHHHH---HHHHHHhhccchhhhHHHHHHHH----
Q 005727 7 FLFEIIVEQFLLYADLFFYSETILQQIV-PPVLNSFSDQDSRVRYYACEA---LYNIAKVVRGDFIIFFNQIFDAL---- 78 (680)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~yL~~Iv-~~VL~~l~D~d~rVR~~A~ea---L~nI~kv~~~~il~~f~eIfd~L---- 78 (680)
++-+.++.+|.-.....+. .++..-. .+.+.+..+.+..+++++... ++....+++++....-++....+
T Consensus 247 ~~~~~~~~~F~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~i~~~~~~~~~e~~~~~~~~~~ 324 (2105)
T COG5032 247 RSLPVIIKKFLNLLLIKVS--YYLPSFFRLSLLSYLDHFETDLFKTFLVTSCFLFFVDEICKPESEHLAEEVSEKLSKFL 324 (2105)
T ss_pred cCChhHHHHHHHHhhhHhe--eeccchhhhhhhHhhcCcchhHHHHHHhhheeeeeeccccCcccccchHHHHHHHHHHH
Confidence 5567788887744333333 4444444 677788888899999988542 23333445544332222222222
Q ss_pred HHhhcCCChhHHHHHHHHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHH
Q 005727 79 CKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLD 158 (680)
Q Consensus 79 ~kL~aD~d~~Vr~gA~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~ 158 (680)
.....|+.++++..+ ++.. .+..........-+..+...+.+.....+..+....+....+.+...++++.+++.
T Consensus 325 ~~~~~~~~~~~~~~~--~~~~---~~~fd~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 399 (2105)
T COG5032 325 TIEIIDSFPEIRISA--LSSL---LVIFDYHLALPDAVRLLFGESNDKVFLISELALDSTGRLLRVLPARVLPSLFEFLL 399 (2105)
T ss_pred hhhcccccHHHHHHH--Hhcc---ccccCccccCHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhccHHhhhhHHHHHHH
Confidence 233567777777663 1111 01011001111112222222222222333333344556666666556666666666
Q ss_pred HHHHhcCCCChhHHHH--HHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC-cccccch
Q 005727 159 GLFNMLSDSSHEIRQQ--ADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG-DQLVPYY 235 (680)
Q Consensus 159 ~Lf~lLsD~~~dVR~~--a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~-~~l~pfL 235 (680)
.+...+... ...+.. .+..+-....+..........+++..++..+.+.........+.-++++.++++ ....+|.
T Consensus 400 ~~~~~l~~~-~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~l~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 478 (2105)
T COG5032 400 SLLTVLKIS-GLILEFEISAQLLCNLIRSSNQLLTSLISPYFLFILPKCIDSSNSEISYRVENLGELKDILGLDRITDYQ 478 (2105)
T ss_pred Hhhhhhhhc-chHHHHHHHHHHHHHHHhhhHHhhhhhcchhHHhhhhHhhccccHHHHHHHHHHHHHHHHhhhhhccHHH
Confidence 555555544 222211 111111122222111122334446677777766665566667778888888887 4556676
Q ss_pred HhHHHHHhhhhcCC-chhHHHHHHHHHHHHHH
Q 005727 236 ADILGAILPCISDK-EEKIRVVARETNEELRA 266 (680)
Q Consensus 236 p~LLp~LL~~Lsds-~~eIR~~A~~~n~~Ll~ 266 (680)
-...+.......+. ..-.|++..++...+..
T Consensus 479 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 510 (2105)
T COG5032 479 ALSLRLIIVSIQLRSFVFKREAINQIFKQLAS 510 (2105)
T ss_pred HHhhhHhHHHHHHhhccchhhHHHHHHHHHHH
Confidence 66666666666543 33455555555555544
No 214
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.63 E-value=53 Score=38.64 Aligned_cols=144 Identities=13% Similarity=0.191 Sum_probs=83.2
Q ss_pred HHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhcc----------c-----------c------ccHhhhHHHHHHHhc--
Q 005727 75 FDALCKLSADSDANVQSAA-HLLDRLVKDIVTES----------D-----------Q------FSIEEFIPLLRERMN-- 124 (680)
Q Consensus 75 fd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es----------~-----------~------f~L~~fIP~L~e~i~-- 124 (680)
+..++..+.+..+.+++-+ -.|-+++|||.-.= + . ..-..++..+.....
T Consensus 212 L~~l~eml~s~n~~~~Kl~~lSLlaVFKDIiP~YkIR~lte~Ek~~k~sKev~klr~yE~~Ll~~Yk~ylQkLe~~vK~~ 291 (704)
T KOG2153|consen 212 LKELFEMLDSQNPKAKKLALLSLLAVFKDIIPGYKIRPLTEKEKRTKLSKEVLKLREYEQALLKQYKSYLQKLEQFVKDL 291 (704)
T ss_pred HHHHHHHHhhhchHHHHHHHHHHHHHHHhhcccceecccHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4445555666777777777 55777778776520 0 0 000112222222221
Q ss_pred -CCCHH---HHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHH
Q 005727 125 -VLNPY---VRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEI 200 (680)
Q Consensus 125 -~~np~---vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~i 200 (680)
...|. .-+.|+++...|...-+ ...|...++.++..+++|+...|+.++|+++..+..
T Consensus 292 ~~~~~~~v~l~~vav~c~~~Ll~a~p--HFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~---------------- 353 (704)
T KOG2153|consen 292 SLRTPQQVSLAQVAVQCACELLEAVP--HFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFE---------------- 353 (704)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHhhh--hccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhc----------------
Confidence 12232 22456666665544222 266788999999999999999999999988776653
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhh
Q 005727 201 LVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP 244 (680)
Q Consensus 201 Ll~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~ 244 (680)
.+....+.+.++.|+..++.- .-.+++|.++..++.
T Consensus 354 -----~D~~g~~sl~~Vr~i~~llK~---rn~~v~~~~~~~~ls 389 (704)
T KOG2153|consen 354 -----NDNGGSGSLAIVRIINSLLKT---RNYEVLPDMITTFLS 389 (704)
T ss_pred -----CCCccchhHHHHHHHHHHhhh---hcccchhhHHHHHHh
Confidence 111234566677777655433 234556666665554
No 215
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=86.52 E-value=7.2 Score=35.35 Aligned_cols=67 Identities=22% Similarity=0.221 Sum_probs=54.8
Q ss_pred HHHHHHHhcCC----CcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005727 280 ILSIATRQLSS----EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 280 iL~vL~~~L~~----~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is 348 (680)
++..+...+.+ .....|..++.-++.+.+.+++.+.++.+++...|-.+|..+ +++..++++|..+.
T Consensus 12 il~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi 82 (107)
T PF08064_consen 12 ILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFI 82 (107)
T ss_pred HHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHH
Confidence 33444444443 456689999999999999999999999999999999998877 78888999988776
No 216
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=86.38 E-value=14 Score=39.59 Aligned_cols=152 Identities=16% Similarity=0.173 Sum_probs=84.1
Q ss_pred hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCC------CHHHHHHHHHHHHH
Q 005727 149 MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP------DEFTRLTAITWINE 222 (680)
Q Consensus 149 Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~------d~~irl~Al~WL~e 222 (680)
+.-|++.+...| +.+++.+.|.+|-++|. + +..+..++|+.+.++.++ +-+.-.+.+.....
T Consensus 195 Lq~YF~kvisal---~dEs~~~~r~aAl~sLr-------~--dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~s 262 (450)
T COG5095 195 LQMYFDKVISAL---LDESDEQTRDAALESLR-------N--DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSS 262 (450)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHhc-------c--CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 444555544433 34467778888754432 2 456888888888877643 12222334444444
Q ss_pred HHHhcCcccccchHhHHHHHhhhhcC-----Cch-----hHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCC-C
Q 005727 223 FVKLGGDQLVPYYADILGAILPCISD-----KEE-----KIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS-E 291 (680)
Q Consensus 223 ~~~l~~~~l~pfLp~LLp~LL~~Lsd-----s~~-----eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~-~ 291 (680)
+++-..--+-||+.+++|.|+.|+.- ... .+|+.|....+-..+-..+.-..+ -+.+...+.+.+.+ +
T Consensus 263 LL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktL-kPRvtrTllKafLD~~ 341 (450)
T COG5095 263 LLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTL-KPRVTRTLLKAFLDRE 341 (450)
T ss_pred HhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhh-chHHHHHHHHHHHhcc
Confidence 44444444569999999999998843 111 377777666554333222100000 14455554444432 2
Q ss_pred -cHHHHHHHHHHHHHHHhhChhh
Q 005727 292 -WEATRIEALHWISTLLNRHRTE 313 (680)
Q Consensus 292 -~~~tR~aaL~WL~~L~~~~p~~ 313 (680)
...|...|+.-+..+....-..
T Consensus 342 k~~sT~YGalkgls~l~ke~ir~ 364 (450)
T COG5095 342 KTESTQYGALKGLSILSKEVIRT 364 (450)
T ss_pred cccchhhhhhhhhhhhchhheee
Confidence 2447777777777766655443
No 217
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.34 E-value=81 Score=37.66 Aligned_cols=409 Identities=16% Similarity=0.133 Sum_probs=212.1
Q ss_pred hhhhhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHH
Q 005727 24 FYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKD 102 (680)
Q Consensus 24 ~~~~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkd 102 (680)
..-.+.+..++..|-+-+...|+.----|...+.||.. +.....+-++|-..|. .++...-||+-| -+|=++++.
T Consensus 103 n~n~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~~DI~KlLv--S~~~~~~vkqkaALclL~L~r~ 178 (938)
T KOG1077|consen 103 NENSDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFADDIPKLLV--SGSSMDYVKQKAALCLLRLFRK 178 (938)
T ss_pred hcchHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhhhhhHHHHh--CCcchHHHHHHHHHHHHHHHhc
Confidence 34456666677777777777777665555555555532 2222233344432221 355566777766 566677663
Q ss_pred HhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCC-------------CCh
Q 005727 103 IVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSD-------------SSH 169 (680)
Q Consensus 103 iv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD-------------~~~ 169 (680)
..+.+........+...++|.+-.+-..+.+.|..+.+-.+.+.-..+|--+..|.+.... |.|
T Consensus 179 ---spDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~P 255 (938)
T KOG1077|consen 179 ---SPDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAP 255 (938)
T ss_pred ---CccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCCh
Confidence 1122333444555555556655555555666666666555555444444444444332211 111
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCC----ChHHHHHHHHHhcCCC----C--HH-HHHHHH-HHHHHHHHhcCcccccchHh
Q 005727 170 EIRQQADSALWEFLQEIKNSPSV----DYGRMAEILVQRAASP----D--EF-TRLTAI-TWINEFVKLGGDQLVPYYAD 237 (680)
Q Consensus 170 dVR~~a~~~L~~fL~ei~~~~~~----d~~~II~iLl~~~~s~----d--~~-irl~Al-~WL~e~~~l~~~~l~pfLp~ 237 (680)
=......++| ...+...+. .+-++.+-++...+.+ + .. .+-+.+ +.|+-...+.++. ..+.+
T Consensus 256 WL~vKl~rlL----q~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~--~ll~~ 329 (938)
T KOG1077|consen 256 WLQVKLLRLL----QIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEP--ELLSR 329 (938)
T ss_pred HHHHHHHHHH----HhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcH--HHHHH
Confidence 1111111111 111111011 1233333333333321 1 11 222222 2454444454433 23678
Q ss_pred HHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChhhHhh
Q 005727 238 ILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLH 316 (680)
Q Consensus 238 LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~-~~~~~tR~aaL~WL~~L~~~~p~~~~~ 316 (680)
.+..+-+.+++.+..||-.|.+..-.+... +..-+.+ ..=.+.+..-|+ .....+|..|++.|.++.+..-.+ .
T Consensus 330 ~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~dav--K~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak--~ 404 (938)
T KOG1077|consen 330 AVNQLGQFLSHRETNIRYLALESMCKLASS-EFSIDAV--KKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAK--Q 404 (938)
T ss_pred HHHHHHHHhhcccccchhhhHHHHHHHHhc-cchHHHH--HHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHH--H
Confidence 888888999999999999988776654332 1111111 111233444444 445668999999998887764332 3
Q ss_pred hhHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHhhccchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhh-cChhhHH
Q 005727 317 FLNDIFDTLLKALSDPS--DEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVL-LDAERVY 393 (680)
Q Consensus 317 ~l~~l~p~LL~~LsD~s--~eV~~~al~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~-L~~e~Iy 393 (680)
..++++.+|.. .|.+ ++++.++-=+=.+++.+-..|.+++-.|++.-.+-.. +-|+.++|.. .|.|.+-
T Consensus 405 IV~elLqYL~t--Ad~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vs------deVW~RvvQiVvNnedlq 476 (938)
T KOG1077|consen 405 IVAELLQYLET--ADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVS------DEVWYRVVQIVVNNEDLQ 476 (938)
T ss_pred HHHHHHHHHhh--cchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhccccc------HHHHHHhheeEecchhhh
Confidence 34455555544 4553 6677766555556776667788888887776553222 3456666665 4556555
Q ss_pred HHHHHhhccc-CChhHHHHHHHHHHHHHhchHHHHHHHHHHhhccCCcchHHHHHHHHHHhccChhHHHHHHH
Q 005727 394 RELSTILEGE-ADLDFACTMVQALNLILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCL 465 (680)
Q Consensus 394 ~~La~iL~~~-~Dl~F~~~mVq~Ln~iLLTa~EL~~lR~~L~~~l~~~~~~~lF~~L~~~w~~n~v~~~slcl 465 (680)
++-++-+-++ ....--+.||..=.-|| .||-+.+.+ -........|..|++..--.+++|-+|-|
T Consensus 477 ~yaak~~fe~Lq~~a~hE~mVKvggyiL------GEfg~LIa~-~prss~~~qFsllh~K~~~~s~~tr~lLL 542 (938)
T KOG1077|consen 477 GYAAKRLFEYLQKPACHENMVKVGGYIL------GEFGNLIAD-DPRSSPAVQFSLLHEKLHLCSPVTRALLL 542 (938)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhhhhhh------hhhhhhhcC-CCCCChHHHHHHHHHHhccCChhHHHHHH
Confidence 5544433221 11223345555444443 454444443 12345678999999887666666655543
No 218
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=86.29 E-value=1.2 Score=32.72 Aligned_cols=29 Identities=21% Similarity=0.125 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005727 320 DIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 320 ~l~p~LL~~LsD~s~eV~~~al~lLa~Is 348 (680)
+.+|.|++.|++++++|+..++|+|+.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999886
No 219
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=86.19 E-value=11 Score=36.24 Aligned_cols=76 Identities=14% Similarity=0.235 Sum_probs=62.3
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHHhhcC
Q 005727 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNS 189 (680)
Q Consensus 114 ~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~L--p~~L~~Lf~lLsD-~~~dVR~~a~~~L~~fL~ei~~~ 189 (680)
.-+..|..|+.+.||.+-..++..+..+.+-.+..+-..+ -+|++.|.+++.+ .+++||+.+..++..--..+++.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~ 115 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKND 115 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 3466778899999999999999999999988886554333 3789999999999 78999999888888888777654
No 220
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=86.00 E-value=3.3 Score=37.53 Aligned_cols=78 Identities=17% Similarity=0.162 Sum_probs=53.9
Q ss_pred CChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHHhcCcccccchHhHHHHHhhh
Q 005727 167 SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAIT-WINEFVKLGGDQLVPYYADILGAILPC 245 (680)
Q Consensus 167 ~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~-WL~e~~~l~~~~l~pfLp~LLp~LL~~ 245 (680)
.+..-|+.+-.+++.+++..+.....-.++|+-.|...+.. ++.+..|++ |-.-+-.+.++++.|+++.++..+++.
T Consensus 27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~--~~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI--PELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLPL 104 (107)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHh
Confidence 45567888888999998855432222345555555544443 478888888 554445667889999999999999886
Q ss_pred h
Q 005727 246 I 246 (680)
Q Consensus 246 L 246 (680)
+
T Consensus 105 ~ 105 (107)
T PF08064_consen 105 W 105 (107)
T ss_pred c
Confidence 5
No 221
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=85.87 E-value=74 Score=36.75 Aligned_cols=169 Identities=16% Similarity=0.135 Sum_probs=92.5
Q ss_pred cCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcC-----------CCCHHHHHHHHHHHHHHHHhcCcccc
Q 005727 164 LSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAA-----------SPDEFTRLTAITWINEFVKLGGDQLV 232 (680)
Q Consensus 164 LsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~-----------s~d~~irl~Al~WL~e~~~l~~~~l~ 232 (680)
.+|++.+|-..|+..|.++.. ..+=+.+|..|..--. -.++.+|...+.++..=. .+ .
T Consensus 246 sad~~~~V~~~ae~~LKr~~~------~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~-~A----a 314 (501)
T PF13001_consen 246 SADSNSSVSDRAEDLLKRLSV------SLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSV-IA----A 314 (501)
T ss_pred EeCCcchHHHHHHHHHhhcCC------CCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhH-HH----H
Confidence 355666666666555443321 1222445544443222 123556666665554311 11 1
Q ss_pred cchHhHHHHHhhhhcCC--chhHHHHHHHHH---HHHHHhccCCCCCCChHhHHHHHHHhc------------CCCcHHH
Q 005727 233 PYYADILGAILPCISDK--EEKIRVVARETN---EELRAIKADPADGFDVGPILSIATRQL------------SSEWEAT 295 (680)
Q Consensus 233 pfLp~LLp~LL~~Lsds--~~eIR~~A~~~n---~~Ll~~v~~~~~~ldl~~iL~vL~~~L------------~~~~~~t 295 (680)
...|.++.++..++..+ +..+|..+.+.. ....+.+.. --+..+-+.+..++ ..+....
T Consensus 315 ~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~----~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~l 390 (501)
T PF13001_consen 315 TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISP----QILKLLRPVILSQGWPLIQDSSSQSNSSEDIEL 390 (501)
T ss_pred hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCH----HHHHHHHHHHHhcCccccccccccCCCcccHHH
Confidence 24677888888888766 445555543333 111111100 00111222222221 1345668
Q ss_pred HHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005727 296 RIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 296 R~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is 348 (680)
|-.+...||.|+.+.|.-+..- -.++..|..+|.++.++|+...-++|+.+.
T Consensus 391 R~~aYe~lG~L~~~~p~l~~~d-~~li~~LF~sL~~~~~evr~sIqeALssl~ 442 (501)
T PF13001_consen 391 RSLAYETLGLLAKRAPSLFSKD-LSLIEFLFDSLEDESPEVRVSIQEALSSLA 442 (501)
T ss_pred HHHHHHHHHHHHccCccccccc-HHHHHHHHHHhhCcchHHHHHHHHHHHHHH
Confidence 9999999999999999876332 456677777788999999887777777665
No 222
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.71 E-value=1e+02 Score=39.93 Aligned_cols=114 Identities=18% Similarity=0.124 Sum_probs=71.9
Q ss_pred cccchHhHHHHH-hhhhcCCc----hhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHH-hcCCCcHHHHHHHHHHHH
Q 005727 231 LVPYYADILGAI-LPCISDKE----EKIRVVARETNEELRAIKADPADGFDVGPILSIATR-QLSSEWEATRIEALHWIS 304 (680)
Q Consensus 231 l~pfLp~LLp~L-L~~Lsds~----~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~-~L~~~~~~tR~aaL~WL~ 304 (680)
+..|+|.+.|.. .+|+++.. +.....|..+++ ++... .....-.++++..++. ...+..|.+|.+++..+.
T Consensus 1476 ~~kyl~~~~~~~~~~~~~~~~y~~~d~a~~~a~~~~~-lm~~~--~~~~~l~~e~l~~l~~~~~~~~tw~vr~avl~fl~ 1552 (1710)
T KOG1851|consen 1476 LPKYLPDLIADDLYPCLGENTYRDVDLAKNSALLCHS-LMSLS--WIGHHLQPEFLRDLKMLTADSSTWRVRSAVLKFLQ 1552 (1710)
T ss_pred chhhhhhhhcccccccccccccccchHHHHHHHHHHH-HHHhh--ccchhhHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 345666666644 35666542 222333333333 22221 1222334677777774 345677999999998887
Q ss_pred HHH--hhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005727 305 TLL--NRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 305 ~L~--~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is 348 (680)
... ...+ .-.+.-+++...+.+.|+|..-+||..+..+|+-+-
T Consensus 1553 ~~vy~n~Fv-~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~ 1597 (1710)
T KOG1851|consen 1553 TVVYSNIFV-SQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLL 1597 (1710)
T ss_pred HHHHHHhhc-ccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHH
Confidence 443 3333 234567788899999999998899999999998776
No 223
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=85.55 E-value=42 Score=38.77 Aligned_cols=168 Identities=15% Similarity=0.221 Sum_probs=104.1
Q ss_pred chhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhccccccHhhhHHHHHHHhcC--------CCHHHHHHHHHH
Q 005727 66 DFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNV--------LNPYVRQFLVGW 137 (680)
Q Consensus 66 ~il~~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~--------~np~vR~~avsw 137 (680)
+...||++|..++.. .|+.-|..| | .++-+++| +..++|-+..+|.. .|-..=..++..
T Consensus 204 ElQlYy~~It~a~~g----~~~~~r~eA--L----~sL~TDsG---L~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m 270 (576)
T KOG2549|consen 204 ELQLYYKEITEACTG----SDEPLRQEA--L----QSLETDSG---LQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRM 270 (576)
T ss_pred HHHHHHHHHHHHHhc----CCHHHHHHH--H----HhhccCcc---HHHHHHHHHHHHhhheeeccccccHHHHHHHHHH
Confidence 455788888887633 555556555 2 33455555 66667777766652 223334556677
Q ss_pred HHHhhcCCchhhhhchHHHHHHHHHhc----------CCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCC
Q 005727 138 ITVLDSVPDIDMLGFLPDFLDGLFNML----------SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAAS 207 (680)
Q Consensus 138 I~~L~sip~~~Li~~Lp~~L~~Lf~lL----------sD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s 207 (680)
+..|.+-|...+-+|+-.+++.+..++ .|.+-.+|..|+..+..+++.......-=-..|+..+.....+
T Consensus 271 ~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D 350 (576)
T KOG2549|consen 271 VRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLD 350 (576)
T ss_pred HHHHhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcC
Confidence 777888899999999999999997543 2344569999999999888877542111135677777777766
Q ss_pred CC--HHHHHHHHHHHHHHHHh-cCcccccchHhHHHHHhhhh
Q 005727 208 PD--EFTRLTAITWINEFVKL-GGDQLVPYYADILGAILPCI 246 (680)
Q Consensus 208 ~d--~~irl~Al~WL~e~~~l-~~~~l~pfLp~LLp~LL~~L 246 (680)
.. ......|+.-+.+|-.. -...++|.+...-..+-+.+
T Consensus 351 ~~~~~st~YGai~gL~~lg~~~I~~~ilp~L~~~~~~l~~~l 392 (576)
T KOG2549|consen 351 NKKPLSTHYGAIAGLSELGHEVIRTVILPNLKEYNERLQSVL 392 (576)
T ss_pred CCCCchhhhhHHHHHHHhhhhhhhheeccchHHHHHHhhhhc
Confidence 53 44566677777665331 12234444444444444433
No 224
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=85.15 E-value=17 Score=34.10 Aligned_cols=76 Identities=14% Similarity=0.181 Sum_probs=59.8
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhc-hH-HHHHHHHHhcCC---CChhHHHHHHHHHHHHHHHhh
Q 005727 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF-LP-DFLDGLFNMLSD---SSHEIRQQADSALWEFLQEIK 187 (680)
Q Consensus 113 ~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~-Lp-~~L~~Lf~lLsD---~~~dVR~~a~~~L~~fL~ei~ 187 (680)
..-+..|..++...||.+...++..+..+.+-.+..+... -. +|+..|.+++.+ .+++||+.+.+.+...-..++
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3346677888889999999999999999988877655433 33 688888888876 478899998888888877776
Q ss_pred c
Q 005727 188 N 188 (680)
Q Consensus 188 ~ 188 (680)
.
T Consensus 116 ~ 116 (133)
T cd03561 116 G 116 (133)
T ss_pred C
Confidence 5
No 225
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=85.09 E-value=10 Score=42.01 Aligned_cols=130 Identities=18% Similarity=0.202 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHH-HhhcCC--ChhHHHHH-HHHHHHHHHHhh-ccc-----------c
Q 005727 46 SRVRYYACEALYNIAKVVRGDFIIFFNQIFDALC-KLSADS--DANVQSAA-HLLDRLVKDIVT-ESD-----------Q 109 (680)
Q Consensus 46 ~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~-kL~aD~--d~~Vr~gA-~~Ldrllkdiv~-es~-----------~ 109 (680)
...|.+|++-+..+++..++.....+......+. +..+|+ +..-|.|| .++..+.-...+ ..| .
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 4567788888888877654443333322222222 233344 45677788 443333221111 111 2
Q ss_pred ccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHH
Q 005727 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSAL 179 (680)
Q Consensus 110 f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L 179 (680)
|--..++|-|. -=....|-.|.-|+..+..+.+.-+. ..+.++++.+.+.|.+++.-|+.-|+.|+
T Consensus 305 Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~---~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK---EQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H---HHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 33345567666 22356799999999999999886553 46778889999999999999998887653
No 226
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.97 E-value=62 Score=35.05 Aligned_cols=51 Identities=24% Similarity=0.244 Sum_probs=43.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCCh
Q 005727 119 LRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSH 169 (680)
Q Consensus 119 L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~ 169 (680)
+.+.+.+.+|.||+.|+..+-.+...+...+..|=-..++.+++++.|+.+
T Consensus 8 lv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~ 58 (353)
T KOG2973|consen 8 LVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP 58 (353)
T ss_pred HHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc
Confidence 456778899999999998888787777677777878889999999999877
No 227
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=84.06 E-value=11 Score=34.72 Aligned_cols=95 Identities=25% Similarity=0.252 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhcccchhHHhHHHH-HHHHHHhhcC------hhhH
Q 005727 320 DIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGAL-IIRRLCVLLD------AERV 392 (680)
Q Consensus 320 ~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~rg~~-IIrqLc~~L~------~e~I 392 (680)
=-++.|++.|.|++++|+..|+++|.+.+..+.+++.++.- +..-..+..+|.. .+|=|+..-| ..-|
T Consensus 8 w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~~-----~p~l~~L~~~g~~Ll~~~lS~~~Gf~~L~~~~~v 82 (115)
T PF14663_consen 8 WGIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVSL-----RPSLDHLGDIGSPLLLRFLSTPSGFRYLNEIGYV 82 (115)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHHc-----CcHHHHHHHcCHHHHHHHHcchHHHHHhcchhHH
Confidence 35678999999999999999999999999766666655431 1111122233333 3333333222 1346
Q ss_pred HHHHHHhhcccCChhHHHHHHHHHHHHH
Q 005727 393 YRELSTILEGEADLDFACTMVQALNLIL 420 (680)
Q Consensus 393 y~~La~iL~~~~Dl~F~~~mVq~Ln~iL 420 (680)
-+.+-.|.+. .+.++|..+=..+...+
T Consensus 83 ~~El~~W~~~-~N~~YV~~vE~~l~~~~ 109 (115)
T PF14663_consen 83 EKELDKWFES-FNKEYVKLVEEFLSEAL 109 (115)
T ss_pred HHHHHHHHHc-ccHHHHHHHHHHHHHHH
Confidence 6666666633 56677665555554433
No 228
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.70 E-value=43 Score=41.51 Aligned_cols=252 Identities=16% Similarity=0.098 Sum_probs=142.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc--hhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCC
Q 005727 115 FIPLLRERMNVLNPYVRQFLVGWITVLDSVPD--IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV 192 (680)
Q Consensus 115 fIP~L~e~i~~~np~vR~~avswI~~L~sip~--~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~ 192 (680)
=+|.+++-+-++.- |.-|+..++.|....+ .++.- =-.|++..+|+|.-+.+|.|..-.-.=..++. +......
T Consensus 473 QLPiVLQVLLSQvH--RlRAL~LL~RFLDlGpWAV~LaL-sVGIFPYVLKLLQS~a~ELrpiLVFIWAKILA-vD~SCQ~ 548 (1387)
T KOG1517|consen 473 QLPIVLQVLLSQVH--RLRALVLLARFLDLGPWAVDLAL-SVGIFPYVLKLLQSSARELRPILVFIWAKILA-VDPSCQA 548 (1387)
T ss_pred hcchHHHHHHHHHH--HHHHHHHHHHHhccchhhhhhhh-ccchHHHHHHHhccchHhhhhhHHHHHHHHHh-cCchhHH
Confidence 35555554443333 4446777777776554 22221 12577888889999999988542111111111 1011111
Q ss_pred Ch--HHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHhcCcc-cccchHhHHHHHhhhhcCC-chhHHHHHHHHHHHHH
Q 005727 193 DY--GRMAEILVQRAAS---PDEFTRLTAITWINEFVKLGGDQ-LVPYYADILGAILPCISDK-EEKIRVVARETNEELR 265 (680)
Q Consensus 193 d~--~~II~iLl~~~~s---~d~~irl~Al~WL~e~~~l~~~~-l~pfLp~LLp~LL~~Lsds-~~eIR~~A~~~n~~Ll 265 (680)
|+ +..-.+.++.+.+ -+++-|..|.+-+..|+.-.+.. -.-+=+.++.+-+..|.|+ ++-.|.=..-+.+.|-
T Consensus 549 dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW 628 (1387)
T KOG1517|consen 549 DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLW 628 (1387)
T ss_pred HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence 11 0001111222222 23577777777777776532211 1112356777888888885 6888888888888654
Q ss_pred HhccCCC-CCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC----hhhHh------------hhhHHHHH----H
Q 005727 266 AIKADPA-DGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRH----RTEVL------------HFLNDIFD----T 324 (680)
Q Consensus 266 ~~v~~~~-~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~----p~~~~------------~~l~~l~p----~ 324 (680)
+-..+.. .+.. +..-+.|...|.++..++|-||+-.|+.+.... .+... --.+++++ .
T Consensus 629 ~d~~~Arw~G~r-~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ 707 (1387)
T KOG1517|consen 629 EDYDEARWSGRR-DNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS 707 (1387)
T ss_pred hhcchhhhcccc-ccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence 4322100 0000 123345667778888999999999999999873 22211 12445555 7
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHh-hccchHHHHHHHHHHhhcccchhHHh
Q 005727 325 LLKALSDPSDEVVLLVLEVHACIA-KDLQHFRQLVVFLVHNFRVDNSLLEK 374 (680)
Q Consensus 325 LL~~LsD~s~eV~~~al~lLa~Is-~~~~~F~~fm~~LL~lf~~d~~lLe~ 374 (680)
++..++|.++.|++.....|+++. .+..+|.-++- +....+...+|.
T Consensus 708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va~---n~~~~~~~~lE~ 755 (1387)
T KOG1517|consen 708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVAG---NYLLPESSSLEK 755 (1387)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHhh---hhcccchhhhhc
Confidence 888999999999999888999888 44555555544 344444444554
No 229
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.64 E-value=70 Score=34.63 Aligned_cols=131 Identities=17% Similarity=0.162 Sum_probs=78.3
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHHHhhccch-hhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH-hhccccccH
Q 005727 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDF-IIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDI-VTESDQFSI 112 (680)
Q Consensus 35 ~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~i-l~~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkdi-v~es~~f~L 112 (680)
..+..-+.|+++.||++|-+.+.+.... .+.+ ..+=...++.|.++..|.++ .+.||.+|.++..+- +.+ .-+
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~~~l~~---~ll 80 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQKEELRK---KLL 80 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc-ccHHHHHHHHHHhhHHHHH---HHH
Confidence 3456677899999999999888776422 2222 24445678889999999988 677776666654422 211 113
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCch--hhhhchH----HHHHHHHHhcCCCChh
Q 005727 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDI--DMLGFLP----DFLDGLFNMLSDSSHE 170 (680)
Q Consensus 113 ~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~--~Li~~Lp----~~L~~Lf~lLsD~~~d 170 (680)
..|+..+..+++++.+-.-..++..+.++.+..+. .+...++ .=+..|++...|.+-.
T Consensus 81 ~~~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n 144 (353)
T KOG2973|consen 81 QDLLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYN 144 (353)
T ss_pred HHHHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccc
Confidence 33777888888877444444455556666555442 1222333 3344455555665444
No 230
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=82.81 E-value=45 Score=39.59 Aligned_cols=105 Identities=16% Similarity=0.193 Sum_probs=79.1
Q ss_pred HHhhcCCChhHHHHH-HHHHHHHHHHhhcc-----ccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhc
Q 005727 79 CKLSADSDANVQSAA-HLLDRLVKDIVTES-----DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF 152 (680)
Q Consensus 79 ~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es-----~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~ 152 (680)
.+++.+..--.|.+- +.++.++.+...+. -...++.+|..+.||+.|.+|.+|..++.-...+...|.. ...-
T Consensus 305 ~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk-~~~~ 383 (1128)
T COG5098 305 DELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK-TVGR 383 (1128)
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc-ccch
Confidence 345666667788877 88888877766543 1335788999999999999999999998877766555432 1122
Q ss_pred hHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 005727 153 LPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (680)
Q Consensus 153 Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ 184 (680)
=.++..-..+.+.|-+.-||+.|.+.+..++-
T Consensus 384 r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 384 RHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 34666777789999999999999999888874
No 231
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=82.59 E-value=1.9 Score=31.69 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=26.8
Q ss_pred hhHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 005727 32 QIVPPVLNSFSDQDSRVRYYACEALYNIA 60 (680)
Q Consensus 32 ~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~ 60 (680)
..+|+++..+.++|..||..|+-+|.|++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36899999999999999999999999986
No 232
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=82.19 E-value=44 Score=33.19 Aligned_cols=129 Identities=17% Similarity=0.154 Sum_probs=79.2
Q ss_pred HhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHh
Q 005727 236 ADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVL 315 (680)
Q Consensus 236 p~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~ 315 (680)
.+.++-|+++.-+++..+|..|.+..+...+. .-.+-...+|.|.....|++..+|..|..-+..+.++.+.=+.
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~q-----GLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQ-----GLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhc-----CCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 34455666667778899999998887754443 1234467889999988999999999999999999999987554
Q ss_pred h-hhHHH---HHHHHHhcCCCCHHH---HHHHHHHHHHHh-hccchHHHHHHHHHHhhcccc
Q 005727 316 H-FLNDI---FDTLLKALSDPSDEV---VLLVLEVHACIA-KDLQHFRQLVVFLVHNFRVDN 369 (680)
Q Consensus 316 ~-~l~~l---~p~LL~~LsD~s~eV---~~~al~lLa~Is-~~~~~F~~fm~~LL~lf~~d~ 369 (680)
. +.+++ +.+-...-.|..... ...-+.-|-.+. ++.++=++|+.++++.|..+.
T Consensus 82 ~~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~~l~k~f~~~~ 143 (187)
T PF12830_consen 82 SRYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLKSLLKQFDFDL 143 (187)
T ss_pred HHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhc
Confidence 3 22222 222222222322111 112222222222 345555666666666666553
No 233
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=82.12 E-value=99 Score=35.28 Aligned_cols=282 Identities=14% Similarity=0.050 Sum_probs=141.4
Q ss_pred CHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCC-ChhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHH
Q 005727 45 DSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADS-DANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRER 122 (680)
Q Consensus 45 d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~-d~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~ 122 (680)
.-..|-.|++.+...++..+- ....+||..-..++... ..++|.+| +.|.++++.--..++ ..--.++..
T Consensus 3 ~l~~R~~a~~~l~~~i~~~~~---~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-----~~R~~fF~~ 74 (464)
T PF11864_consen 3 PLSERIKAAEELCESIQKYPL---SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-----LMRAEFFRD 74 (464)
T ss_pred CHHHHHHHHHHHHHHHHhCCc---hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-----HHHHHHHHH
Confidence 345677777777666554432 45677888877777655 45799999 877777662221111 011112222
Q ss_pred hc-CCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCCh-------------------------hHHHHHH
Q 005727 123 MN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSH-------------------------EIRQQAD 176 (680)
Q Consensus 123 i~-~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~-------------------------dVR~~a~ 176 (680)
+. ..++.-=-.-+.++..|.+- |.++..+-.++.+-|.+++.+.-. +.+. ..
T Consensus 75 I~~~~~~~d~~~~l~aL~~LT~~-Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~-l~ 152 (464)
T PF11864_consen 75 ISDPSNDDDFDLRLEALIALTDN-GRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESN-LS 152 (464)
T ss_pred HhcCCCchhHHHHHHHHHHHHcC-CcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhh-HH
Confidence 22 11222122334444444332 233333344444444443322111 1111 12
Q ss_pred HHHHHHHHHhhcCCC----CChHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCch
Q 005727 177 SALWEFLQEIKNSPS----VDYGRMAEILVQRAASP-DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEE 251 (680)
Q Consensus 177 ~~L~~fL~ei~~~~~----~d~~~II~iLl~~~~s~-d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~ 251 (680)
.++.-+..-++-... -++..++..+..-|..+ ++..-..++.-+..++.-+. .=-.-++.++..+-.... -.
T Consensus 153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~-iP~~sl~~~i~vLCsi~~--~~ 229 (464)
T PF11864_consen 153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGD-IPSESLSPCIEVLCSIVN--SV 229 (464)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCc-CChHHHHHHHHHHhhHhc--cc
Confidence 233333333332211 13667777776665443 33333556666666554321 111235566666655433 23
Q ss_pred hHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcC--C----CcHHHHHHHHHHHHHHHhhChhhHhhh--h--HHH
Q 005727 252 KIRVVARETNEELRAIKADPADGFDVGPILSIATRQLS--S----EWEATRIEALHWISTLLNRHRTEVLHF--L--NDI 321 (680)
Q Consensus 252 eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~--~----~~~~tR~aaL~WL~~L~~~~p~~~~~~--l--~~l 321 (680)
+..+.+.++...+.+.-. -..++..|...|. + ++..+-.-|+..++++.-+.+++-.|. . ..+
T Consensus 230 ~l~~~~w~~m~nL~~S~~-------g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~v 302 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHL-------GHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSV 302 (464)
T ss_pred ccchhHHHHHHHHHcCcc-------HHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHH
Confidence 566666666664443211 1466777777773 2 223344578888888888875543333 2 248
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHH
Q 005727 322 FDTLLKALSDPSDEVVLLVLEVHAC 346 (680)
Q Consensus 322 ~p~LL~~LsD~s~eV~~~al~lLa~ 346 (680)
+|.+...|+-.++.|-..++.++.+
T Consensus 303 l~sl~~al~~~~~~v~~eIl~~i~~ 327 (464)
T PF11864_consen 303 LPSLLNALKSNSPRVDYEILLLINR 327 (464)
T ss_pred HHHHHHHHhCCCCeehHHHHHHHHH
Confidence 8889888886666544444444333
No 234
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=81.67 E-value=84 Score=34.15 Aligned_cols=215 Identities=16% Similarity=0.193 Sum_probs=116.6
Q ss_pred HHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHH
Q 005727 135 VGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRL 214 (680)
Q Consensus 135 vswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl 214 (680)
++.....++.+.......++..+..+++.++.... .+..+..+...+++ +=++.+...+.+..+.+..
T Consensus 7 ~~~W~~~~~~n~~~~~~~~~~~L~~~l~~ls~~~~-~~~~g~~l~~~iL~-----------~~~k~lyr~L~~~~~~~~~ 74 (330)
T PF11707_consen 7 LQIWSYAAQVNNHSLLSLVSSVLALLLKKLSSDLS-FQSYGLELIRSILQ-----------NHLKLLYRSLSSSKPSLTN 74 (330)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHH-----------HHHHHHHHHhCcCcHHHHH
Confidence 33444556666555666667777776666655443 55554444444443 1267777788887777777
Q ss_pred HHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHH
Q 005727 215 TAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEA 294 (680)
Q Consensus 215 ~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~ 294 (680)
.++.-+.+++...|.. +...++..+..+.+. ...++..-....+.. .. -.+....
T Consensus 75 ~~LrLL~~iv~f~~g~-------~a~~v~~~fd~~~~~--------l~kll~~~~~~~~~~--~~--------~~~~~~s 129 (330)
T PF11707_consen 75 PALRLLTAIVSFDGGA-------LAREVLRSFDFSLKS--------LPKLLTPRKKEKEKD--SE--------SSKSKPS 129 (330)
T ss_pred HHHHHHHHHHccCCHH-------HHHHHHHhcCCchhh--------HHHHhcccccccccc--cc--------ccccCcC
Confidence 8888888777633321 111111111111100 000100000000000 00 0000026
Q ss_pred HHHHHHHHHHHHHhhChhhHh-hhh--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-hc--------cchHH-HHHHHH
Q 005727 295 TRIEALHWISTLLNRHRTEVL-HFL--NDIFDTLLKALSDPSDEVVLLVLEVHACIA-KD--------LQHFR-QLVVFL 361 (680)
Q Consensus 295 tR~aaL~WL~~L~~~~p~~~~-~~l--~~l~p~LL~~LsD~s~eV~~~al~lLa~Is-~~--------~~~F~-~fm~~L 361 (680)
+|.+.++.+..+....+..+. ..+ .+++..+++.|.+.+++++...+++|.+.. .+ -..|. .++..|
T Consensus 130 iR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l 209 (330)
T PF11707_consen 130 IRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQL 209 (330)
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHH
Confidence 899999877766666555432 332 235899999999999999999999888644 22 23343 478888
Q ss_pred HHhhcccch----hHHhHHHHHHHHHHhh
Q 005727 362 VHNFRVDNS----LLEKRGALIIRRLCVL 386 (680)
Q Consensus 362 L~lf~~d~~----lLe~rg~~IIrqLc~~ 386 (680)
..++..+.. -..+..--.+..+|..
T Consensus 210 ~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~ 238 (330)
T PF11707_consen 210 ASLYSRDGEDEKSSVADLVHEFLLALCTD 238 (330)
T ss_pred HHHhcccCCcccchHHHHHHHHHHHHhcC
Confidence 887766544 3333444456666653
No 235
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=81.20 E-value=1.2e+02 Score=35.48 Aligned_cols=178 Identities=13% Similarity=0.131 Sum_probs=97.5
Q ss_pred HHHHHhhccccccHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCC----CChhHH
Q 005727 99 LVKDIVTESDQFSIEEFIPLLRERMNVL--NPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSD----SSHEIR 172 (680)
Q Consensus 99 llkdiv~es~~f~L~~fIP~L~e~i~~~--np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD----~~~dVR 172 (680)
++-|.+...|.-+ -+..+.+.+... .+.....++..+-.....|. +++++.++.++.+ +.+.+|
T Consensus 345 ~~~Dal~~~GT~~---a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt-------~~~l~~l~~l~~~~~~~~~~~l~ 414 (574)
T smart00638 345 IFLDAVAQAGTPP---ALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPT-------EEILKALFELAESPEVQKQPYLR 414 (574)
T ss_pred HHHHHHHhcCCHH---HHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCC-------HHHHHHHHHHhcCccccccHHHH
Confidence 4445555444322 234444444432 23333444444433444454 4556677777765 356788
Q ss_pred HHHHHHHHHHHHHhhcCCCC----ChHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhh
Q 005727 173 QQADSALWEFLQEIKNSPSV----DYGRMAEILVQRAA----SPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP 244 (680)
Q Consensus 173 ~~a~~~L~~fL~ei~~~~~~----d~~~II~iLl~~~~----s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~ 244 (680)
..|.-+++.+++........ -...+++++...+. ..++..+..++..|+. ++ .|..++.+.+
T Consensus 415 ~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN---~g-------~~~~i~~l~~ 484 (574)
T smart00638 415 ESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN---AG-------HPSSIKVLEP 484 (574)
T ss_pred HHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc---cC-------ChhHHHHHHH
Confidence 88888888888754332211 13566777666543 3455555656666653 22 3445555555
Q ss_pred hhc-CC--chhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCC--CcHHHHHHHHHHHH
Q 005727 245 CIS-DK--EEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS--EWEATRIEALHWIS 304 (680)
Q Consensus 245 ~Ls-ds--~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~--~~~~tR~aaL~WL~ 304 (680)
.+. +. ...+|.+|..+...+.... -..+-+++...+.+ ++.++|++|...+.
T Consensus 485 ~l~~~~~~~~~iR~~Av~Alr~~a~~~--------p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 485 YLEGAEPLSTFIRLAAILALRNLAKRD--------PRKVQEVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHHHHhC--------chHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 444 33 4679999888876433221 24556666666654 45678999876543
No 236
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=81.00 E-value=1.4e+02 Score=36.12 Aligned_cols=331 Identities=15% Similarity=0.153 Sum_probs=162.5
Q ss_pred hhhhhhhhhhhhH-HHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHH
Q 005727 22 LFFYSETILQQIV-PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRL 99 (680)
Q Consensus 22 ~~~~~~~yL~~Iv-~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrl 99 (680)
-+..++.-+++++ +.|+..|.++.--.|.-||+-+..+..-.+... ..-++++..-+++.|++--|+-.| .+|..+
T Consensus 449 k~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~--ill~aye~t~ncl~nn~lpv~ieAalAlq~f 526 (970)
T COG5656 449 KMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNG--ILLEAYENTHNCLKNNHLPVMIEAALALQFF 526 (970)
T ss_pred cCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccch--HHHHHHHHHHHHHhcCCcchhhhHHHHHHHH
Confidence 3344455666655 999999999999999999998877754455432 235778888888888877676555 666665
Q ss_pred HHHHhhccccccHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHH----hc-------CCC
Q 005727 100 VKDIVTESDQFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFN----ML-------SDS 167 (680)
Q Consensus 100 lkdiv~es~~f~L~~fIP~L~e~i~~-~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~----lL-------sD~ 167 (680)
+-+- .-.-.+...+|...+.+-. .|.+---.+-+.+.-+.+--+.++.+|-|++...|.+ ++ +|+
T Consensus 527 i~~~---q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~ 603 (970)
T COG5656 527 IFNE---QSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDT 603 (970)
T ss_pred Hhch---hhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 4422 1111133344444444321 1111111122223333333345666676766666643 22 111
Q ss_pred C--hhHHHHHHHHHHHHHHHhh-------cCCC------CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccc
Q 005727 168 S--HEIRQQADSALWEFLQEIK-------NSPS------VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV 232 (680)
Q Consensus 168 ~--~dVR~~a~~~L~~fL~ei~-------~~~~------~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~ 232 (680)
+ .|=++.++.. +++.+. +.+. ..+-++++.++.+-. ...=.+|++.+....- .-..+.
T Consensus 604 ~s~vDDKqmaasG---iL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i---~dfy~Ea~dildg~tf-~skeI~ 676 (970)
T COG5656 604 SSVVDDKQMAASG---ILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEI---SDFYQEALDILDGYTF-MSKEIE 676 (970)
T ss_pred cccccHHHHHHHH---HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHhhhhH-HHHHhh
Confidence 1 2223333222 222222 1111 112333333332221 1222334444432211 122445
Q ss_pred cchHhHHHHHhhhhcCCch-hHHHHHHHHHHHHHHhcc-CCCCCCChHhH-HHHHHHhcCCCcH--HHHHHHHHHHHHHH
Q 005727 233 PYYADILGAILPCISDKEE-KIRVVARETNEELRAIKA-DPADGFDVGPI-LSIATRQLSSEWE--ATRIEALHWISTLL 307 (680)
Q Consensus 233 pfLp~LLp~LL~~Lsds~~-eIR~~A~~~n~~Ll~~v~-~~~~~ldl~~i-L~vL~~~L~~~~~--~tR~aaL~WL~~L~ 307 (680)
|-.+++...+.+++.++.. +--+.+..+.+.+....+ +-...-.|.++ +.+....+.++.. ..++.+.+.+-.+.
T Consensus 677 pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~ 756 (970)
T COG5656 677 PIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLI 756 (970)
T ss_pred hhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHH
Confidence 6667777777777776653 222223333333322211 11223345544 4667777766554 57888887776666
Q ss_pred hhChhhH-hhhhHHHHHHHH--HhcCCCCHHHHHHHHHHHH-H----------HhhccchHHHHHHHHHHh
Q 005727 308 NRHRTEV-LHFLNDIFDTLL--KALSDPSDEVVLLVLEVHA-C----------IAKDLQHFRQLVVFLVHN 364 (680)
Q Consensus 308 ~~~p~~~-~~~l~~l~p~LL--~~LsD~s~eV~~~al~lLa-~----------Is~~~~~F~~fm~~LL~l 364 (680)
-...+++ ..|.|-.....- -.+.|+..--+..++++.. . |-++++|...|.+....-
T Consensus 757 Ln~rd~Ll~qy~plfi~vags~l~~~dElg~~sv~aleliinnli~~P~eTLqiLe~qg~l~~FF~~wf~~ 827 (970)
T COG5656 757 LNIRDELLSQYLPLFISVAGSGLKMIDELGPASVYALELIINNLILRPKETLQILEEQGYLQSFFEKWFSQ 827 (970)
T ss_pred HHccchhHHhhhHHHHHHHhhhhhccccccchhhhHHHHHHHHHhcChHHHHHHHHHcCcHHHHHHHHHhc
Confidence 6655544 334442222222 1345655422333444322 1 224667777777666554
No 237
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=80.92 E-value=6.6 Score=35.78 Aligned_cols=83 Identities=23% Similarity=0.255 Sum_probs=57.1
Q ss_pred HhcCCCC--h--hHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHH-HHHHHHHhcCcccccchH
Q 005727 162 NMLSDSS--H--EIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAIT-WINEFVKLGGDQLVPYYA 236 (680)
Q Consensus 162 ~lLsD~~--~--dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~-WL~e~~~l~~~~l~pfLp 236 (680)
..+.|++ + .-|+.+-.+++.+++..+.......++|+-.|...+. .++.|..|+. |-.-+..+.++++.|.+.
T Consensus 18 ~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l~~ll~ 95 (107)
T smart00802 18 NILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEELGPLLD 95 (107)
T ss_pred HHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3455544 3 3478888899999886653222234556656555554 5668999988 655555677888999999
Q ss_pred hHHHHHhhhh
Q 005727 237 DILGAILPCI 246 (680)
Q Consensus 237 ~LLp~LL~~L 246 (680)
.++..+++..
T Consensus 96 ~~~~~i~~~~ 105 (107)
T smart00802 96 QIFAAILPLW 105 (107)
T ss_pred HHHHHHHHhc
Confidence 9999888765
No 238
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=80.83 E-value=1.9e+02 Score=37.67 Aligned_cols=70 Identities=20% Similarity=0.182 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHh----hccchHHH--HHHHHHHhhcccchhHHhHHHHHHHHHHhhcCh
Q 005727 320 DIFDTLLKALSDPSDEVVLLVLEVHACIA----KDLQHFRQ--LVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDA 389 (680)
Q Consensus 320 ~l~p~LL~~LsD~s~eV~~~al~lLa~Is----~~~~~F~~--fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~ 389 (680)
..+..||.-|+..+--||..+|-+|..++ ++++++-+ -+.-|..++++..+..-.-.+--+|+|-..-++
T Consensus 530 NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPA 605 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPA 605 (2195)
T ss_pred hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCch
Confidence 46778999999999999999998888777 35566654 233344455544443332234467777655543
No 239
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=80.45 E-value=4.6 Score=37.68 Aligned_cols=72 Identities=19% Similarity=0.277 Sum_probs=59.9
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCc-----------hhHHHHHHHHH
Q 005727 193 DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKE-----------EKIRVVARETN 261 (680)
Q Consensus 193 d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~-----------~eIR~~A~~~n 261 (680)
.+..++++|..++++.++.|+..|+.-|..++.-+++.|..++-+=...|-.+..+.. ..||..|.++.
T Consensus 35 ~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~ 114 (122)
T cd03572 35 SCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELI 114 (122)
T ss_pred HHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHH
Confidence 5788999999999999999999999999999999998888888877777777766542 35888888876
Q ss_pred HHH
Q 005727 262 EEL 264 (680)
Q Consensus 262 ~~L 264 (680)
..+
T Consensus 115 ~~i 117 (122)
T cd03572 115 KAI 117 (122)
T ss_pred HHH
Confidence 543
No 240
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=80.37 E-value=75 Score=32.75 Aligned_cols=169 Identities=15% Similarity=0.148 Sum_probs=101.5
Q ss_pred HHHHH-hcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCCh
Q 005727 199 EILVQ-RAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDV 277 (680)
Q Consensus 199 ~iLl~-~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl 277 (680)
+.++. ..+..++..+...++.+.+++.-. . .-.|.++.++.........+.+.++.+....+.+. +..-|
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~---~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~-----~~r~f 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHK---N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKA-----NDRHF 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccC---c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHh-----CchHH
Confidence 34444 344567778888888777665444 2 44566677766666666666654444433322221 11112
Q ss_pred HhHHHHHHH---h------cCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhc-CCCCHHHHHHHHHHHHHH
Q 005727 278 GPILSIATR---Q------LSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKAL-SDPSDEVVLLVLEVHACI 347 (680)
Q Consensus 278 ~~iL~vL~~---~------L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~L-sD~s~eV~~~al~lLa~I 347 (680)
+.+-+.+.. + =.+..++..++.-.-+..+....|+ +-.++++.+-.+| .+.++.+...+++.++.+
T Consensus 74 ~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~L 149 (234)
T PF12530_consen 74 PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPL 149 (234)
T ss_pred HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 322223222 1 1234466666656677777777777 7788889999999 566677777999999999
Q ss_pred hh-ccchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhh
Q 005727 348 AK-DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVL 386 (680)
Q Consensus 348 s~-~~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~ 386 (680)
++ .--.|.+.-..+.+.+..+ .| ..|++.||.+
T Consensus 150 c~~~vvd~~s~w~vl~~~l~~~-----~r-p~v~~~l~~l 183 (234)
T PF12530_consen 150 CEAEVVDFYSAWKVLQKKLSLD-----YR-PLVLKSLCSL 183 (234)
T ss_pred HHHhhccHHHHHHHHHHhcCCc-----cc-hHHHHHHHHH
Confidence 94 3345666667777766332 23 5666656644
No 241
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=80.19 E-value=45 Score=35.86 Aligned_cols=145 Identities=19% Similarity=0.248 Sum_probs=82.4
Q ss_pred cchhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhccccccHhhhHHHHHHHhc------CCCHHHHHHHHHHH
Q 005727 65 GDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMN------VLNPYVRQFLVGWI 138 (680)
Q Consensus 65 ~~il~~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~------~~np~vR~~avswI 138 (680)
.+...||+.+..+| +..++...|.|| |..+ -.++| +..++|-+...++ -.|-..-..++..+
T Consensus 193 KELq~YF~kvisal---~dEs~~~~r~aA--l~sL----r~dsG---lhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~ 260 (450)
T COG5095 193 KELQMYFDKVISAL---LDESDEQTRDAA--LESL----RNDSG---LHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMY 260 (450)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHH--HHHh----ccCcc---HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 35557888888887 555677788877 2222 22333 4444554444443 23334445566666
Q ss_pred HHhhcCCchhhhhchHHHHHHHHHhc------CCCCh----hHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCC
Q 005727 139 TVLDSVPDIDMLGFLPDFLDGLFNML------SDSSH----EIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP 208 (680)
Q Consensus 139 ~~L~sip~~~Li~~Lp~~L~~Lf~lL------sD~~~----dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~ 208 (680)
..+.+-+.+=+-+|+..+++.++.++ ++|+. .+|..|+.+++-.++.+.+...-=-+.++..++...-+.
T Consensus 261 ~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~ 340 (450)
T COG5095 261 SSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDR 340 (450)
T ss_pred HHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhc
Confidence 66776666555677777777766443 33332 289888888887777664421111255666666544332
Q ss_pred C--HHHHHHHHHHHH
Q 005727 209 D--EFTRLTAITWIN 221 (680)
Q Consensus 209 d--~~irl~Al~WL~ 221 (680)
+ +..+..|+.-++
T Consensus 341 ~k~~sT~YGalkgls 355 (450)
T COG5095 341 EKTESTQYGALKGLS 355 (450)
T ss_pred ccccchhhhhhhhhh
Confidence 2 335555655554
No 242
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=80.08 E-value=33 Score=37.17 Aligned_cols=154 Identities=18% Similarity=0.091 Sum_probs=85.2
Q ss_pred hhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHh-hccchhhhHHHHHHHHH----HhhcCCChhHHHHH-HHHHHHHH--
Q 005727 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKV-VRGDFIIFFNQIFDALC----KLSADSDANVQSAA-HLLDRLVK-- 101 (680)
Q Consensus 30 L~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv-~~~~il~~f~eIfd~L~----kL~aD~d~~Vr~gA-~~Ldrllk-- 101 (680)
-+.++..+.++|.|+.+-+|++-..++.++... ..+....+...+.+.|. +..+.|-+...+|. .+-.-++-
T Consensus 59 ~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~ 138 (339)
T PF12074_consen 59 PKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALS 138 (339)
T ss_pred CHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhc
Confidence 455678889999999999999988888776540 01223334444444444 44566666544332 11001111
Q ss_pred -----H-----HhhccccccHhhhHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCCchhhhhc-hHHHHHHHHHhcCCC-
Q 005727 102 -----D-----IVTESDQFSIEEFIPLLRERMNVL--NPYVRQFLVGWITVLDSVPDIDMLGF-LPDFLDGLFNMLSDS- 167 (680)
Q Consensus 102 -----d-----iv~es~~f~L~~fIP~L~e~i~~~--np~vR~~avswI~~L~sip~~~Li~~-Lp~~L~~Lf~lLsD~- 167 (680)
. +...+-..+ ++=-.++.+++|.. ++..-.+++..+..+..-........ ...+-+.+.-++..+
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~-~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~ 217 (339)
T PF12074_consen 139 SWKLDKIDSKNISFWSLALD-PKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSN 217 (339)
T ss_pred cccchhhhhhhhhhhhhccC-CCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCC
Confidence 0 000000000 01111445556544 55666677777765544333222222 355667777788887
Q ss_pred -ChhHHHHHHHHHHHHHH
Q 005727 168 -SHEIRQQADSALWEFLQ 184 (680)
Q Consensus 168 -~~dVR~~a~~~L~~fL~ 184 (680)
..+||+.|.+++..+..
T Consensus 218 ~~~~vR~~A~~~l~~l~~ 235 (339)
T PF12074_consen 218 VSWKVRRAALSALKKLYA 235 (339)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 89999999888887765
No 243
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=80.04 E-value=24 Score=33.16 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=60.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHHHhhcC
Q 005727 115 FIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSDSS--HEIRQQADSALWEFLQEIKNS 189 (680)
Q Consensus 115 fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~L--p~~L~~Lf~lLsD~~--~dVR~~a~~~L~~fL~ei~~~ 189 (680)
.+..|..|+...||.+-..++..+..+.+-.+..+...+ -+|++.|.++++++. +.||+.+..++..--..++..
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~ 116 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKND 116 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 466678899999999999999999999988877665444 368999999998853 349988888888888777653
No 244
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=80.01 E-value=21 Score=41.04 Aligned_cols=155 Identities=15% Similarity=0.131 Sum_probs=100.6
Q ss_pred hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCC--------HHHHHHHHHHH
Q 005727 149 MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPD--------EFTRLTAITWI 220 (680)
Q Consensus 149 Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d--------~~irl~Al~WL 220 (680)
+.-|+.++.. .+.+.++.-|++|- . .+.. +..+..++|+++.++..+- -+.-.+.+..+
T Consensus 205 lQlYy~~It~----a~~g~~~~~r~eAL---~----sL~T--DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~ 271 (576)
T KOG2549|consen 205 LQLYYKEITE----ACTGSDEPLRQEAL---Q----SLET--DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMV 271 (576)
T ss_pred HHHHHHHHHH----HHhcCCHHHHHHHH---H----hhcc--CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHH
Confidence 3444444444 55557777887763 2 2322 4567888888888776431 12223345555
Q ss_pred HHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHH
Q 005727 221 NEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEAL 300 (680)
Q Consensus 221 ~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL 300 (680)
..+.+-+.-.+-||+..++|.++.|+...+ ++..+ ..+.+|..|--|.
T Consensus 272 rSLl~Np~i~lepYlh~L~PSvlTCvVsk~----------------l~~~p----------------~~dnhwaLRDfAA 319 (576)
T KOG2549|consen 272 RSLLDNPNIFLEPYLHQLVPSVLTCVVSKN----------------LCLRP----------------ELDNHWALRDFAA 319 (576)
T ss_pred HHHhcCCccchhhHHHHHhhHHHHhhhhhh----------------ccCCc----------------cccchHHHHHHHH
Confidence 555555666788999999999999986422 11110 3456788898888
Q ss_pred HHHHHHHhhChhhHhhhhHHHHHHHHHhcCCC-CHHH-HHHHHHHHHHHh
Q 005727 301 HWISTLLNRHRTEVLHFLNDIFDTLLKALSDP-SDEV-VLLVLEVHACIA 348 (680)
Q Consensus 301 ~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~-s~eV-~~~al~lLa~Is 348 (680)
..+..+....+.....-.+.++-++.+.+.|+ .+.- +--++..|+.++
T Consensus 320 ~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg 369 (576)
T KOG2549|consen 320 RLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELG 369 (576)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhh
Confidence 88888888888887777788888999999998 3332 224444555444
No 245
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.12 E-value=5.4 Score=40.63 Aligned_cols=92 Identities=22% Similarity=0.306 Sum_probs=67.2
Q ss_pred hhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Q 005727 147 IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKL 226 (680)
Q Consensus 147 ~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l 226 (680)
.+.-.|||.|.+||..+ +..-|-.|.+.+.+++..-+++..+=++.+|..|-..+.+.|.++...++..|..++..
T Consensus 110 Ldy~~yLp~F~dGL~e~----~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~ 185 (262)
T KOG3961|consen 110 LDYCPYLPLFFDGLAET----DHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVS 185 (262)
T ss_pred ccchHHHHHHhhhhhhc----CCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh
Confidence 34678999999998753 33344444444555555444444455788888888899999999988888888887655
Q ss_pred c---CcccccchHhHHHHH
Q 005727 227 G---GDQLVPYYADILGAI 242 (680)
Q Consensus 227 ~---~~~l~pfLp~LLp~L 242 (680)
. |..++||.-+++|.+
T Consensus 186 ~~~vG~aLVPfYRQlLp~~ 204 (262)
T KOG3961|consen 186 VGCVGAALVPFYRQLLPVL 204 (262)
T ss_pred ccccchhhhhHHHHhhhhh
Confidence 4 578999999999965
No 246
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.84 E-value=24 Score=44.68 Aligned_cols=120 Identities=23% Similarity=0.188 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhcccc-----ccHhhhHHHHH------------HHhcCCCHHHHH
Q 005727 71 FNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQ-----FSIEEFIPLLR------------ERMNVLNPYVRQ 132 (680)
Q Consensus 71 f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~-----f~L~~fIP~L~------------e~i~~~np~vR~ 132 (680)
|--++.-|.+++.|.-+.||||| +.+-|.+......-+. --...++|+|- +-++.+-.++--
T Consensus 995 wi~ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ 1074 (1610)
T KOG1848|consen 995 WIMLLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSC 1074 (1610)
T ss_pred HHHHHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhh
Confidence 56677888889999999999999 7777766544433221 12355777775 111111112222
Q ss_pred HHHHHHH-HhhcC-----CchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC
Q 005727 133 FLVGWIT-VLDSV-----PDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP 190 (680)
Q Consensus 133 ~avswI~-~L~si-----p~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~ 190 (680)
..++-|. .+.+- +-.++.....++++-|.++++|.++++..+|..++..++.++-...
T Consensus 1075 ltisgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~sii~~~ 1138 (1610)
T KOG1848|consen 1075 LTISGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSIIEFG 1138 (1610)
T ss_pred hhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHHhhhc
Confidence 2333332 22111 1123456667778888899999999999999999999998886543
No 247
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=78.27 E-value=40 Score=40.10 Aligned_cols=111 Identities=17% Similarity=0.251 Sum_probs=82.2
Q ss_pred hhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhh-cCCChhHHHHH-HHHHHHHHHHh
Q 005727 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLS-ADSDANVQSAA-HLLDRLVKDIV 104 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~-aD~d~~Vr~gA-~~Ldrllkdiv 104 (680)
+...+.|+|-+..++.|.|.+++..+...+..+++..-.... =+.|++.|.++. --+...||..+ .++.++++
T Consensus 384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~v--k~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q--- 458 (700)
T KOG2137|consen 384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFV--KQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ--- 458 (700)
T ss_pred HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHH--HHHHHHHhhcchhcccchHHHHHHHHHHHHHHH---
Confidence 678899999999999999999999999888888776553222 245788887764 33455666665 55666653
Q ss_pred hccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 005727 105 TESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDS 143 (680)
Q Consensus 105 ~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~s 143 (680)
..+.+.+-..++.+.+++...+|.+-...+.....+.-
T Consensus 459 -~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~ 496 (700)
T KOG2137|consen 459 -RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALAL 496 (700)
T ss_pred -HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 33445556678888899999999999988888776543
No 248
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=78.24 E-value=2.5 Score=30.32 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=25.7
Q ss_pred hHHHHhhccCCCCHHHHHHHHHHHHHHH
Q 005727 33 IVPPVLNSFSDQDSRVRYYACEALYNIA 60 (680)
Q Consensus 33 Iv~~VL~~l~D~d~rVR~~A~eaL~nI~ 60 (680)
.+++++..+.++|.+++..|+.+|.|++
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 6888999999999999999999999985
No 249
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.99 E-value=2e+02 Score=36.21 Aligned_cols=293 Identities=14% Similarity=0.119 Sum_probs=150.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHH--H-----Hhc--CCCChhHHHHHHHHHHHHHH-Hhh
Q 005727 118 LLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGL--F-----NML--SDSSHEIRQQADSALWEFLQ-EIK 187 (680)
Q Consensus 118 ~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~L--f-----~lL--sD~~~dVR~~a~~~L~~fL~-ei~ 187 (680)
-|+..+.+....+-+.+-+|+..-..-....++..+.-|+..- - .+. .|+.+.++.+++. +-. +-+
T Consensus 82 eLf~~l~~~k~~i~~lv~~W~e~Yk~n~~~al~~linf~l~~cGck~~Vt~~~v~~~ds~~i~~~~~e~----~~e~es~ 157 (1048)
T KOG2011|consen 82 ELFAILLDSKSPIEELVDEWIEDYKENRDKALLELINFFLQCCGCKGRVTDFDVQDVDSSSITLSMTEL----FDERESG 157 (1048)
T ss_pred HHHHHHHcccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCcccccHHhhccccchHHHHHHHHH----Hhhhhhc
Confidence 3444555544448888889998877766666666665555532 0 111 1233445544432 222 222
Q ss_pred cCC----C-------CChHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHHhcCcccccchHhH---------HHHHh
Q 005727 188 NSP----S-------VDYGRMAEILVQRAASPD----EFTRLTAITWINEFVKLGGDQLVPYYADI---------LGAIL 243 (680)
Q Consensus 188 ~~~----~-------~d~~~II~iLl~~~~s~d----~~irl~Al~WL~e~~~l~~~~l~pfLp~L---------Lp~LL 243 (680)
..| + ..+..+++.++.+++..+ ...=.+.+.||..+..- +.....|...+ +...+
T Consensus 158 DYpl~~~g~~~k~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdS-qvR~fRhTaTl~~mklmt~Lv~va~ 236 (1048)
T KOG2011|consen 158 DYPLTSKGPEWKNFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDS-QVRAFRHTATLAAMKLMTALVSVAL 236 (1048)
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 1 135667777777777632 34455566677654322 11222222222 11222
Q ss_pred hhhcCCchhHHH-HHHH--------HHHHHHHhccCCCCCCC-hHhHHHHHHHh-----cCCCcHHHHHHHHHHHHHHHh
Q 005727 244 PCISDKEEKIRV-VARE--------TNEELRAIKADPADGFD-VGPILSIATRQ-----LSSEWEATRIEALHWISTLLN 308 (680)
Q Consensus 244 ~~Lsds~~eIR~-~A~~--------~n~~Ll~~v~~~~~~ld-l~~iL~vL~~~-----L~~~~~~tR~aaL~WL~~L~~ 308 (680)
....+.+..-|+ .|.+ -.++++...+++....| +..+++.+-.. .+|-...+|..|+.-||.-..
T Consensus 237 ~Ls~~~~~tskQleaEr~k~r~~rarle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~ 316 (1048)
T KOG2011|consen 237 NLSSHNDKTSKQLEAERNKSRGNRARLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIK 316 (1048)
T ss_pred HHHHhhHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHH
Confidence 222211111111 0111 11122222111111111 33445443332 346678899999999999999
Q ss_pred hChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc-------chHHHHHHHHHHhhcccchhHHhHHHH---
Q 005727 309 RHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDL-------QHFRQLVVFLVHNFRVDNSLLEKRGAL--- 378 (680)
Q Consensus 309 ~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~~-------~~F~~fm~~LL~lf~~d~~lLe~rg~~--- 378 (680)
.+|+-+.. +.++.++==+|+|.+.+||.+++.+|-.+.+++ .|+..|=..++.+-..|.. ..-|..-
T Consensus 317 ~yP~~Fl~--dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~-~~Vrav~L~~ 393 (1048)
T KOG2011|consen 317 SYPEIFLS--DSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRN-VSVRAVGLVL 393 (1048)
T ss_pred hccHHHhc--chHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcc-hhHHHHHHHH
Confidence 99887654 345555556789999999999999999888542 3445555566665522211 1112222
Q ss_pred -HHHHHHhhcChhhHHHHHHHhhcccCChhHHHHHHHHHHHHH
Q 005727 379 -IIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLIL 420 (680)
Q Consensus 379 -IIrqLc~~L~~e~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iL 420 (680)
+-+.-|..|+.+.|+...+-+.+...+... ..+..|+.-+
T Consensus 394 ~~~~~~~g~L~d~di~~Vy~Li~d~~r~~~~--aa~~fl~~k~ 434 (1048)
T KOG2011|consen 394 CLLLSSSGLLSDKDILIVYSLIYDSNRRVAV--AAGEFLYKKL 434 (1048)
T ss_pred HHHHhcccccChhHHHHHHHHHhccCcchHH--HHHHHHHHHh
Confidence 222234556667777777777766555444 3344454444
No 250
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=77.65 E-value=1.4e+02 Score=35.78 Aligned_cols=202 Identities=16% Similarity=0.156 Sum_probs=114.6
Q ss_pred HHHHHHHhhcCCc-hhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCC------------------Ch
Q 005727 134 LVGWITVLDSVPD-IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV------------------DY 194 (680)
Q Consensus 134 avswI~~L~sip~-~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~------------------d~ 194 (680)
.+..|+.|+.++. +..- =-+|+.+|-+++-+-.+.|-. .+.|-.++.++.+..-+ .-
T Consensus 272 ~~~aLrfLD~l~~kdn~q--Ks~Flk~Ls~~ip~fp~rv~~--~kiLP~L~~el~n~~~vp~~LP~v~~i~~~~s~~~~~ 347 (700)
T KOG2137|consen 272 GLKALRFLDDLPQKDNSQ--KSSFLKGLSKLIPTFPARVLF--QKILPTLVAELVNTKMVPIVLPLVLLIAEGLSQNEFG 347 (700)
T ss_pred hhhhhhhcccccccCcHH--HHHHHHHHHHhhccCCHHHHH--HhhhhHHHHHhccccccccccchhhhhhhccchhhhh
Confidence 3444556666555 2121 235777777777665544433 24566666666432110 11
Q ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHh-cCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCC
Q 005727 195 GRMAEILVQRAASPD-EFTRLTAITWINEFVKL-GGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPA 272 (680)
Q Consensus 195 ~~II~iLl~~~~s~d-~~irl~Al~WL~e~~~l-~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~ 272 (680)
..+.+.|..-...++ ..+.+..++=+.-+.+- .++ .+..+|+|.|..++.+.+..+.+.+.+....+.+.+.-
T Consensus 348 ~~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~e---~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~-- 422 (700)
T KOG2137|consen 348 PKMLPALKPIYSASDPKQALLFILENMDLLKEKTPPE---EVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV-- 422 (700)
T ss_pred hhhhHHHHHHhccCCcccchhhHHhhHHHHHhhCChH---HHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH--
Confidence 333344433333222 22333333333333322 222 24788999999999999999998888877665555421
Q ss_pred CCCChHhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005727 273 DGFDVGPILSIATRQL-SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 273 ~~ldl~~iL~vL~~~L-~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is 348 (680)
..-=..|++.|.... .+.+..+|..++.-++.+.+.+- -.. .-+.++.++++.+-.+++++...+++-....
T Consensus 423 -~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD--~~~-v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 423 -PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD--KAA-VLDELLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred -HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH--HHH-hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 000146666666554 46677799999999998884431 112 2245566777887788888887766555443
No 251
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=77.54 E-value=81 Score=33.33 Aligned_cols=134 Identities=20% Similarity=0.222 Sum_probs=72.5
Q ss_pred CCHHHHHHHHHHHHHh-hcCCchhhhhchHHH---HHHHH-------HhcCCCC--hhHHHHHHHHHHHHHHHhhcCCCC
Q 005727 126 LNPYVRQFLVGWITVL-DSVPDIDMLGFLPDF---LDGLF-------NMLSDSS--HEIRQQADSALWEFLQEIKNSPSV 192 (680)
Q Consensus 126 ~np~vR~~avswI~~L-~sip~~~Li~~Lp~~---L~~Lf-------~lLsD~~--~dVR~~a~~~L~~fL~ei~~~~~~ 192 (680)
.+|..|..|+--+..- .+.|+ +.+.++.- +..|. ..++-++ +..-.-+|++|.-| +.+..+|+.
T Consensus 7 ~~~~~Re~Al~eLsk~r~~~~~--La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLl-Q~vAshpet 83 (262)
T PF04078_consen 7 CNPETRENALLELSKKRESFPD--LAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALL-QCVASHPET 83 (262)
T ss_dssp SSHHHHHHHHHHHHHTCCC-TT--HHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHH-HHHHH-TTT
T ss_pred cCcchHHHHHHHHHHhhhcccc--hhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHH-HHHHcChHH
Confidence 4677787777655533 33444 33333322 22221 2333232 22334467777744 556555543
Q ss_pred -------ChHH-HHHHHHHhcCCC-CHHHHHHHHHHHHHHHHhcCcccccch--HhHHHHHhhhhcCCchhHHHHHHHHH
Q 005727 193 -------DYGR-MAEILVQRAASP-DEFTRLTAITWINEFVKLGGDQLVPYY--ADILGAILPCISDKEEKIRVVARETN 261 (680)
Q Consensus 193 -------d~~~-II~iLl~~~~s~-d~~irl~Al~WL~e~~~l~~~~l~pfL--p~LLp~LL~~Lsds~~eIR~~A~~~n 261 (680)
+++- +-|+|-...++. -|..|++++.-|+.+++....+.+.|+ .+++|..+..|..+.+--|.+|.-..
T Consensus 84 r~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIl 163 (262)
T PF04078_consen 84 RMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFIL 163 (262)
T ss_dssp HHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred HHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHH
Confidence 2222 334442222221 266899999999999998887777775 48999999999877666666665554
Q ss_pred H
Q 005727 262 E 262 (680)
Q Consensus 262 ~ 262 (680)
+
T Consensus 164 q 164 (262)
T PF04078_consen 164 Q 164 (262)
T ss_dssp H
T ss_pred H
Confidence 4
No 252
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.53 E-value=1e+02 Score=39.60 Aligned_cols=257 Identities=16% Similarity=0.126 Sum_probs=142.0
Q ss_pred HHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHhcCCCCHHHHHHH
Q 005727 138 ITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAASPDEFTRLTA 216 (680)
Q Consensus 138 I~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d-~~~II~iLl~~~~s~d~~irl~A 216 (680)
++...+.++..++. ++.=++.+++-++--++..|.-|-..|.+++.......... ++....+.-....+++..||...
T Consensus 25 ~n~~~~~~~~~~~~-~dsel~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t 103 (1312)
T KOG0803|consen 25 INSASSNPDPFVLE-LDSELDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLT 103 (1312)
T ss_pred ccccccCCChHHhc-cCHHHHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHH
Confidence 44556666666666 66666666766766666666655445555544322111112 22222333445567888999999
Q ss_pred HHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCC-C---CChHhHHHHHHHhcCC--
Q 005727 217 ITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPAD-G---FDVGPILSIATRQLSS-- 290 (680)
Q Consensus 217 l~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~-~---ldl~~iL~vL~~~L~~-- 290 (680)
..-+..++...+..+.||+-.++|..+-.-.|.+-.+-.+|...-. ....+... . .--+++.+++++.+-.
T Consensus 104 ~~v~s~l~t~lkk~lsp~LK~li~~wl~~~~d~~~~vs~aa~~sf~---~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~ 180 (1312)
T KOG0803|consen 104 HDVFSKLLTKLKKKLSPFLKSLIPPWLGGQFDLDYPVSEAAKASFK---DGFAEEKDRHVWFKCDPEIFYLVTEILVKET 180 (1312)
T ss_pred HHHHHHHHHHHHHHhhHHHHhhhhhhhheecccchHHHHHHHHHHH---hhcChhhhHHHHHHhhHHHHHHHHHHHhccC
Confidence 9999999988999999999999999998888877655555443322 22111000 0 0013444555554311
Q ss_pred ------------Cc-----HHHHHHHHHHHHHHHhhChh--hHh---hhhHHHH--HHHHHhcCCCCHHHHHHHHHHHHH
Q 005727 291 ------------EW-----EATRIEALHWISTLLNRHRT--EVL---HFLNDIF--DTLLKALSDPSDEVVLLVLEVHAC 346 (680)
Q Consensus 291 ------------~~-----~~tR~aaL~WL~~L~~~~p~--~~~---~~l~~l~--p~LL~~LsD~s~eV~~~al~lLa~ 346 (680)
+. ..+-..++..+..+...... ++. +-...++ ...-+.+++++|.|+....+++..
T Consensus 181 ~~slSd~~~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~ 260 (1312)
T KOG0803|consen 181 PDSLSDLRTLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLS 260 (1312)
T ss_pred ccccchhhhcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHH
Confidence 11 11233455555555533322 222 1111111 256678899999999999999888
Q ss_pred HhhccchH------HHHHHHHHHhhcccchhHHhHHHHHHHHHH---hhcCh----------hhHHHHHHHhhcc
Q 005727 347 IAKDLQHF------RQLVVFLVHNFRVDNSLLEKRGALIIRRLC---VLLDA----------ERVYRELSTILEG 402 (680)
Q Consensus 347 Is~~~~~F------~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc---~~L~~----------e~Iy~~La~iL~~ 402 (680)
+.++...+ ..++..++..+.+.+ . --+.+++.++ ..++. +.|++.+.+.+.+
T Consensus 261 l~~~i~~~~~~~~~~~l~~~~~~~~~~~d-~---~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~irk 331 (1312)
T KOG0803|consen 261 LIDDILNRVMESEKNYLKPVLLGSIDSLD-H---VCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIRK 331 (1312)
T ss_pred HHhhhHHhcchhhhhHhhHHHHccccccc-c---ccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHhh
Confidence 88532222 222333333333222 1 1134555555 22211 4688888888874
No 253
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.51 E-value=2.6e+02 Score=37.30 Aligned_cols=246 Identities=15% Similarity=0.144 Sum_probs=134.5
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHH-hhcCCChhHHHHH-HHHHHHHHHHhhccccccH
Q 005727 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCK-LSADSDANVQSAA-HLLDRLVKDIVTESDQFSI 112 (680)
Q Consensus 35 ~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~k-L~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L 112 (680)
.-+...+.-+++..|-+|++++...+.+.... ++..++.+..++ +.+-.|+.-|-|- .+|..+.|+.+.-.+.-.+
T Consensus 879 ~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl 956 (2067)
T KOG1822|consen 879 TLIVNSLINPNPKLRCAAAEALARLAQVVGSA--PFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHL 956 (2067)
T ss_pred HHHhhhhccCChHHHHHHHHHHHHHHHhcccc--chHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhc
Confidence 34567778899999999999998887665533 233455555553 3455566667666 6677888876654333334
Q ss_pred hhhHHHHHHHhcCCC-HHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHh-cCCCChhHHHHHHHHHHHHHHHhhcCC
Q 005727 113 EEFIPLLRERMNVLN-PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNM-LSDSSHEIRQQADSALWEFLQEIKNSP 190 (680)
Q Consensus 113 ~~fIP~L~e~i~~~n-p~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~l-LsD~~~dVR~~a~~~L~~fL~ei~~~~ 190 (680)
..-+-.+.....|.+ |.|+.+.+-.+..+....+.-..-+.-.-+.-+.++ ++++. .+.....+.++.. .+
T Consensus 957 ~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~--~~~ev~q~~~R~~-----~~ 1029 (2067)
T KOG1822|consen 957 NTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPT--SHVEVHQCYNRCF-----NG 1029 (2067)
T ss_pred ccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCc--chhhhhhhhcccc-----cc
Confidence 444566777777655 599999998888765543322233333333333333 35543 2222223333322 13
Q ss_pred CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccC
Q 005727 191 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (680)
Q Consensus 191 ~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~ 270 (680)
+.+.+.++..+-..++-+-.. +...-+-...+-+..-.++.+++.+.-.|-++.+.+.-..
T Consensus 1030 ~~~~~alittlgpeL~~N~~~-----------------d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFa-- 1090 (2067)
T KOG1822|consen 1030 DDDEDALITTLGPELGPNGDK-----------------DSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFA-- 1090 (2067)
T ss_pred chhHHHHHHhcccccCCCCcc-----------------cchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhc--
Confidence 445566665555544422110 0001111111222222345556666666667666543222
Q ss_pred CCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Q 005727 271 PADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR 309 (680)
Q Consensus 271 ~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~ 309 (680)
.-..+++.++..|...+.+...-.|.+++.=+..+..+
T Consensus 1091 -pr~~n~~~lV~~L~~~l~s~~~i~r~~~~~clrql~~R 1128 (2067)
T KOG1822|consen 1091 -PRHVNLDSLVLQLCSLLSSSYLILRRASFSCLRQLVQR 1128 (2067)
T ss_pred -chhccHHHHHHHHHHHhcchhhhhhhhHHhhhhHHhHH
Confidence 22567888999888888766555555444444444333
No 254
>COG5221 DOP1 Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=77.43 E-value=55 Score=40.63 Aligned_cols=130 Identities=18% Similarity=0.139 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHH
Q 005727 216 AITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEAT 295 (680)
Q Consensus 216 Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~t 295 (680)
-+..+...+-.-|.++.+|...++-.++|.|.++..|--........++.+...++ .+-.+.+..++. .++..
T Consensus 125 ~i~li~~yiv~Lg~~vr~~~~~i~isLLpg~e~es~e~~~l~~hLi~tl~k~L~d~--~~fw~~~w~ill-----~~~~~ 197 (1618)
T COG5221 125 FIDLIERYIVPLGKDVRSYCTSILISLLPGMEFESGEYYSLRAHLIITLFKSLIDP--DVFWSSMWGILL-----NDERL 197 (1618)
T ss_pred HHHHHHhheeecCccHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHhcCCh--hHHHHHHHHHHh-----cCccc
Confidence 34444444334568999999999999999999775554433333344444444331 111234444332 12345
Q ss_pred HHHHHHHHHHHHhhCh------hhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccc
Q 005727 296 RIEALHWISTLLNRHR------TEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQ 352 (680)
Q Consensus 296 R~aaL~WL~~L~~~~p------~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~~~ 352 (680)
|-.++.|+...-.... .-+.|+-.-++-++..+|+|++-.|++..+.+|-.+...+.
T Consensus 198 R~g~l~~l~reeNNdsh~d~~~rlI~p~~gL~VR~l~a~l~dndiLV~R~~lDlLl~~fp~~S 260 (1618)
T COG5221 198 RTGVLNSLMREENNDSHMDWSERLILPHAGLMVRALCAGLGDNDILVVRNCLDLLLFVFPDKS 260 (1618)
T ss_pred cchHHHHHHHHhcCcchhchhhhccCCCcchhHHHHHhhcCCCceeeehhHHHHHHHHccccc
Confidence 7777777776322221 13678888889999999999888888889998887774333
No 255
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=77.22 E-value=7.4 Score=35.46 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccC
Q 005727 209 DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD 270 (680)
Q Consensus 209 d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~ 270 (680)
+..-|..++.-|++++++.|..+..+.|+|+..+..++. .+|.|..|.++-..+.+.+.+
T Consensus 28 ~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~ 87 (107)
T smart00802 28 PYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKE 87 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCH
Confidence 345688999999999999999999999999999998887 567999999998877777653
No 256
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.68 E-value=6.9 Score=39.89 Aligned_cols=77 Identities=14% Similarity=0.290 Sum_probs=64.9
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhc
Q 005727 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (680)
Q Consensus 192 ~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v 268 (680)
.|+...++....-+...+...+..|-+-+.+++-.+|+.++|-+|+++..|-..+...+.|+...+.++...+..+.
T Consensus 110 Ldy~~yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~ 186 (262)
T KOG3961|consen 110 LDYCPYLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSV 186 (262)
T ss_pred ccchHHHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc
Confidence 46778888888887777766777788888888889999999999999999999999999999988888887665443
No 257
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=76.61 E-value=12 Score=32.47 Aligned_cols=65 Identities=17% Similarity=0.206 Sum_probs=50.5
Q ss_pred hhhhhHHHHhhcc-CCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH
Q 005727 29 ILQQIVPPVLNSF-SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA 93 (680)
Q Consensus 29 yL~~Iv~~VL~~l-~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA 93 (680)
|-..++.|...-+ ..++..||....+++.++.......+-..|+.||..|.....|.+.++-.-|
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~a 79 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLA 79 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHH
Confidence 4455555555543 4468999999999999998777777778999999999998888877766655
No 258
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=76.22 E-value=73 Score=32.20 Aligned_cols=40 Identities=13% Similarity=0.211 Sum_probs=29.3
Q ss_pred chhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhh
Q 005727 66 DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVT 105 (680)
Q Consensus 66 ~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~ 105 (680)
...+.+..++..|.++-.+++...|+.+ ..+...++.+..
T Consensus 34 ~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGp 74 (198)
T PF08161_consen 34 RSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGP 74 (198)
T ss_pred hccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCH
Confidence 3446778888888888888888888887 667776665444
No 259
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=75.56 E-value=48 Score=32.95 Aligned_cols=91 Identities=19% Similarity=0.145 Sum_probs=57.8
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCC
Q 005727 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV 192 (680)
Q Consensus 113 ~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~ 192 (680)
+.+.+.+.+-+.+.|+.+|.+++..+-..... .+++.+++.+-..+.|++.-||++..-+|.... ..
T Consensus 119 ~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~-------~~ 185 (213)
T PF08713_consen 119 PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIG-------KK 185 (213)
T ss_dssp GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHC-------TT
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH-------Hh
Confidence 45789999999999999998876443222211 677888888888999999999998655554443 23
Q ss_pred ChHHHHHHHHHhcCCCCHHHHHHH
Q 005727 193 DYGRMAEILVQRAASPDEFTRLTA 216 (680)
Q Consensus 193 d~~~II~iLl~~~~s~d~~irl~A 216 (680)
+-+.+.++|-.+-..-.+.+...|
T Consensus 186 ~~~~v~~~l~~~~~~~~~~~~r~A 209 (213)
T PF08713_consen 186 DPDEVLEFLQKNSDRLSRWTLRYA 209 (213)
T ss_dssp -HHHHHHHHHHS-----HHHHHHH
T ss_pred CHHHHHHHHHHCcccCchhHHHHH
Confidence 556666666665443334444333
No 260
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=75.42 E-value=27 Score=33.27 Aligned_cols=74 Identities=12% Similarity=0.148 Sum_probs=58.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcCC------CChhHHHHHHHHHHHHHHHhh
Q 005727 116 IPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSD------SSHEIRQQADSALWEFLQEIK 187 (680)
Q Consensus 116 IP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~L--p~~L~~Lf~lLsD------~~~dVR~~a~~~L~~fL~ei~ 187 (680)
+..+..|+.+.||.+-..+++.+..+.+-.+..+-..+ -+|+..|.+++++ ++++||+.+..++..--..++
T Consensus 40 ~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 40 VRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 55677888999999999999999999888886665444 3678888888864 678999988888888777775
Q ss_pred cC
Q 005727 188 NS 189 (680)
Q Consensus 188 ~~ 189 (680)
+.
T Consensus 120 ~~ 121 (139)
T cd03567 120 HE 121 (139)
T ss_pred cc
Confidence 43
No 261
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.92 E-value=2.1e+02 Score=35.11 Aligned_cols=365 Identities=15% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCC-----hhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHH
Q 005727 49 RYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSD-----ANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRER 122 (680)
Q Consensus 49 R~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d-----~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~ 122 (680)
|..-.+.++-.=.+..++.+ +-+.+.|-++.+|.| -++-++- -.+.....++..+-.+. +|.+++.
T Consensus 441 R~diSD~~~~~Y~ilgd~ll---~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~-----i~rl~~~ 512 (982)
T KOG2022|consen 441 RKDISDLLMSSYSILGDGLL---DFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTW-----IPRLFET 512 (982)
T ss_pred HHHHHHHHHHHHHHHhHHHH---HHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHH-----HHHHHHh
Q ss_pred hc-----CCCH---HHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCCh
Q 005727 123 MN-----VLNP---YVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDY 194 (680)
Q Consensus 123 i~-----~~np---~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~ 194 (680)
.. ..|| .+-...++.......-.+.-+-+++|-+++||= +++--..+...+..++++.+..-.++.
T Consensus 513 ~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh------~sk~s~q~i~tl~tlC~~C~~~L~py~ 586 (982)
T KOG2022|consen 513 SASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLH------NSKESEQAISTLKTLCETCPESLDPYA 586 (982)
T ss_pred ccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhc------CchHHHHHHHHHHHHHHhhhhhCchHH
Q ss_pred HHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHh-cCcccccchHhHHHHHhhhhcCC-chhHHHHHHH--------HHH
Q 005727 195 GRMAEILVQRAASPD--EFTRLTAITWINEFVKL-GGDQLVPYYADILGAILPCISDK-EEKIRVVARE--------TNE 262 (680)
Q Consensus 195 ~~II~iLl~~~~s~d--~~irl~Al~WL~e~~~l-~~~~l~pfLp~LLp~LL~~Lsds-~~eIR~~A~~--------~n~ 262 (680)
++++...-.-+...+ +..|...+.-||-..+. -++....|+-+++..++..+... .+++..-+.. +..
T Consensus 587 d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS 666 (982)
T KOG2022|consen 587 DQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTIS 666 (982)
T ss_pred HHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Q ss_pred HHHHhccCCCCCCC-------------------hHhHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhChhhH-hhhhHH
Q 005727 263 ELRAIKADPADGFD-------------------VGPILSIATRQLS--SEWEATRIEALHWISTLLNRHRTEV-LHFLND 320 (680)
Q Consensus 263 ~Ll~~v~~~~~~ld-------------------l~~iL~vL~~~L~--~~~~~tR~aaL~WL~~L~~~~p~~~-~~~l~~ 320 (680)
.|......+.+..| ...+++++...+. .....+-+++...++.=.....+.+ .|++++
T Consensus 667 ~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~ 746 (982)
T KOG2022|consen 667 ALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPS 746 (982)
T ss_pred HHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHH
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhcChhhHHHHHHHhh
Q 005727 321 IFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLLDAERVYRELSTIL 400 (680)
Q Consensus 321 l~p~LL~~LsD~s~eV~~~al~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L~~e~Iy~~La~iL 400 (680)
+.+.+.+-...+...--...-..+-.-+..+..++.+-..+...|..-=.+.+.-- |++--..+.. .|.-++.++
T Consensus 747 l~~Fi~r~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~---f~n~~Di~~~--~~~~v~~il 821 (982)
T KOG2022|consen 747 LCPFIVRFLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHP---FSNQPDIYLQ--LIGFVRQIL 821 (982)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccC---CCCCchHHHH--HHHHHHHHH
Q ss_pred cccCCh-----hHHHHHHHHHHHHHhchHHHHHHHHH
Q 005727 401 EGEADL-----DFACTMVQALNLILLTSSELSELRDL 432 (680)
Q Consensus 401 ~~~~Dl-----~F~~~mVq~Ln~iLLTa~EL~~lR~~ 432 (680)
.+..++ .=....++.=..+++++||-...|..
T Consensus 822 kk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa 858 (982)
T KOG2022|consen 822 KKIPKFLEPSMLAFTSLILICAFILLNSPEPTTIRAA 858 (982)
T ss_pred HhCcCccccchHHHHHHHHHHHHHhcCCCccHHHHHH
No 262
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=74.89 E-value=1.6e+02 Score=33.57 Aligned_cols=234 Identities=15% Similarity=0.109 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHhhcCCchhhhhchHHHHHH-HHHhcCCCChhHHHHHHHHHHHHHHHhhcCCC-CChHHHHHHHHHhc
Q 005727 128 PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDG-LFNMLSDSSHEIRQQADSALWEFLQEIKNSPS-VDYGRMAEILVQRA 205 (680)
Q Consensus 128 p~vR~~avswI~~L~sip~~~Li~~Lp~~L~~-Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~-~d~~~II~iLl~~~ 205 (680)
-..|..+...++.+.+..+ ..-+..++.. |..+|+.++.-=|..++-.+.+..+..+.... ...+.+.+.|...+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~---~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWP---ESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 4788999999998877543 2334455553 66788888888888888888888877754321 12467777777777
Q ss_pred CCCC-----H------HHHHHHHHHHHHHHHhcC--cccccchHhHHHHHhhhhc--CCchhHHHHHHHHHHHHHHhccC
Q 005727 206 ASPD-----E------FTRLTAITWINEFVKLGG--DQLVPYYADILGAILPCIS--DKEEKIRVVARETNEELRAIKAD 270 (680)
Q Consensus 206 ~s~d-----~------~irl~Al~WL~e~~~l~~--~~l~pfLp~LLp~LL~~Ls--ds~~eIR~~A~~~n~~Ll~~v~~ 270 (680)
..++ | .+|..|-..+..|.+.+. ..-+|.+|.++++--..-. .+-+.+.+.+.+.-+.+.+....
T Consensus 178 ~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~~ 257 (441)
T PF12054_consen 178 ENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLSP 257 (441)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 7443 1 245566667777766554 3334555443332111111 11123334444443344444332
Q ss_pred CCCC--C-Ch----HhHHHHHHHhcCC--CcHHHHHHHH--HHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCH-HHHH
Q 005727 271 PADG--F-DV----GPILSIATRQLSS--EWEATRIEAL--HWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSD-EVVL 338 (680)
Q Consensus 271 ~~~~--l-dl----~~iL~vL~~~L~~--~~~~tR~aaL--~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~-eV~~ 338 (680)
.... . .+ ..+...+ +.... ....+|+.|. -.+..+ ..-|+++.| ++..|+.+.+-+.. .+..
T Consensus 258 ~~k~~a~~~Le~~r~~l~~ai-~~~~~~~~~~~~~V~Aa~A~A~v~l-~~lP~KLnP----iIrpLMdSIK~Een~~LQ~ 331 (441)
T PF12054_consen 258 SQKLSALQALEDRRQRLQAAI-EEAKEVQTSRDVRVLAAAASALVAL-GGLPKKLNP----IIRPLMDSIKREENELLQQ 331 (441)
T ss_pred cccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCccH----HHHHHHHHhhccccHHHHH
Confidence 1111 0 01 1111111 11111 1122344333 223332 234555444 67778888876654 4444
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHhhcccchhHHhHHHHHHHHHHhhc
Q 005727 339 LVLEVHACIAKDLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRLCVLL 387 (680)
Q Consensus 339 ~al~lLa~Is~~~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqLc~~L 387 (680)
.+...++++. +.+.+.++ +=.+-||++||..+
T Consensus 332 rsA~slA~Li--------------~~~~~rkp---~PndKIvkNLc~fl 363 (441)
T PF12054_consen 332 RSAESLARLI--------------QLCVDRKP---CPNDKIVKNLCTFL 363 (441)
T ss_pred HHHHHHHHHH--------------HHHhCCCC---CCcHHHHHHHhhhh
Confidence 7777766544 33333332 22355899999888
No 263
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=74.82 E-value=2.4e+02 Score=35.62 Aligned_cols=124 Identities=19% Similarity=0.177 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhhc-------cc--hhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHH------HHHHHhhccccccHh
Q 005727 50 YYACEALYNIAKVVR-------GD--FIIFFNQIFDALCKLSADSDANVQSAA-HLLDR------LVKDIVTESDQFSIE 113 (680)
Q Consensus 50 ~~A~eaL~nI~kv~~-------~~--il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldr------llkdiv~es~~f~L~ 113 (680)
..+.+||.|+.+.-. .+ .++.|+-++..| ..-.++.+..-| +.+.+ .+.++++. +
T Consensus 1743 ~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~l---r~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~-~----- 1813 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYL---RCRKHPKLQILALQVILLATANKECVTDLATC-N----- 1813 (2235)
T ss_pred HHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHH---HHcCCchHHHHHHHHHHHHhcccHHHHHHHhh-h-----
Confidence 456788888765332 22 235565555444 344555666666 44333 22233321 1
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcC-CCChhHHHHHHHHHHHHHH
Q 005727 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLS-DSSHEIRQQADSALWEFLQ 184 (680)
Q Consensus 114 ~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLs-D~~~dVR~~a~~~L~~fL~ 184 (680)
.+-.|+. +-+.-|..|+.++..++.|.+.+.+.-..-=..-+..+..++. .+++.+|.+|+++++.+..
T Consensus 1814 -vL~~LL~-lLHS~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1814 -VLTTLLT-LLHSQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred -HHHHHHH-HHhcChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence 1223333 3356799999999999999998864321111101111222333 3567899888888887754
No 264
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=74.34 E-value=1.2e+02 Score=31.95 Aligned_cols=135 Identities=19% Similarity=0.256 Sum_probs=79.6
Q ss_pred CCCHHHHHHHHHHHHHhhc-CCchhhhhchHHHHHHHHHh----------cCCCChhHH--HHHHHHHHHHHHHhhcCCC
Q 005727 125 VLNPYVRQFLVGWITVLDS-VPDIDMLGFLPDFLDGLFNM----------LSDSSHEIR--QQADSALWEFLQEIKNSPS 191 (680)
Q Consensus 125 ~~np~vR~~avswI~~L~s-ip~~~Li~~Lp~~L~~Lf~l----------LsD~~~dVR--~~a~~~L~~fL~ei~~~~~ 191 (680)
..+|..|+.++-|+..--+ .+ +|.+.++.-+.....+ ++-+..+-+ .-+|++|. +++.+...|+
T Consensus 35 l~~~p~rE~aL~ELskkre~~~--dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~-LlQcvASHpd 111 (293)
T KOG3036|consen 35 LVSPPTREMALLELSKKREPFP--DLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALA-LLQCVASHPD 111 (293)
T ss_pred hhCCchHHHHHHHHHHhccCCc--cccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHH-HHHHHhcCcc
Confidence 3567888999888875433 33 3444444433333222 222211111 22356665 4455655443
Q ss_pred C-------ChHH-HHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhcCcccccch--HhHHHHHhhhhcCCchhHHHHHHHH
Q 005727 192 V-------DYGR-MAEILVQRAA-SPDEFTRLTAITWINEFVKLGGDQLVPYY--ADILGAILPCISDKEEKIRVVARET 260 (680)
Q Consensus 192 ~-------d~~~-II~iLl~~~~-s~d~~irl~Al~WL~e~~~l~~~~l~pfL--p~LLp~LL~~Lsds~~eIR~~A~~~ 260 (680)
. +++. +-|.|..... .+.|-.|++++.-|+.+++.+...+..|+ .+++|..++.|....+.-+.+|.-.
T Consensus 112 Tr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fI 191 (293)
T KOG3036|consen 112 TRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFI 191 (293)
T ss_pred hHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHH
Confidence 2 1222 1222222222 23577999999999999999998888875 5899999999988777766666555
Q ss_pred HH
Q 005727 261 NE 262 (680)
Q Consensus 261 n~ 262 (680)
.+
T Consensus 192 lq 193 (293)
T KOG3036|consen 192 LQ 193 (293)
T ss_pred HH
Confidence 44
No 265
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=73.34 E-value=1.7e+02 Score=33.33 Aligned_cols=126 Identities=15% Similarity=0.155 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHh------cCCCHHHHHHHHHHHHHh
Q 005727 69 IFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERM------NVLNPYVRQFLVGWITVL 141 (680)
Q Consensus 69 ~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i------~~~np~vR~~avswI~~L 141 (680)
..++.++..||..++-. +..+.+ ..+..+++...... .+-.|.+-+ +..++.+-.+|+..++.+
T Consensus 213 ~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~~-------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~l 283 (464)
T PF11864_consen 213 ESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGHS-------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRML 283 (464)
T ss_pred HHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHHH-------HHHHHHHHHcccCccccccHHHHhhHHHHHHHH
Confidence 56788999999886655 445556 67777776433221 344444444 234556667899988876
Q ss_pred hcCCchhhhhc--h--HHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HHhhcC-CCCChHHHHHHHHH
Q 005727 142 DSVPDIDMLGF--L--PDFLDGLFNMLSDSSHEIRQQADSALWEFL-QEIKNS-PSVDYGRMAEILVQ 203 (680)
Q Consensus 142 ~sip~~~Li~~--L--p~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL-~ei~~~-~~~d~~~II~iLl~ 203 (680)
....+.+-.+. + +.+++++.+.+.-.++-|-.+...++..++ +++... ...+++.+++++..
T Consensus 284 l~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~ 351 (464)
T PF11864_consen 284 LWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEE 351 (464)
T ss_pred HhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHH
Confidence 54442221111 2 247777777776444434334444444444 333322 23466666666554
No 266
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=73.02 E-value=49 Score=31.25 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=59.3
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcCCCCh--h--HHHHHHHHHHHHHHHh
Q 005727 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSDSSH--E--IRQQADSALWEFLQEI 186 (680)
Q Consensus 113 ~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~L--p~~L~~Lf~lLsD~~~--d--VR~~a~~~L~~fL~ei 186 (680)
..-+..|..++.+.||.+...++..+..+.+-.+..+...+ .+|++.|.+++.++.. . ||+.+...+...-..+
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 34567788899999999999999999999888876654443 4688999998876432 2 8988888888888777
Q ss_pred hc
Q 005727 187 KN 188 (680)
Q Consensus 187 ~~ 188 (680)
+.
T Consensus 121 ~~ 122 (140)
T PF00790_consen 121 KS 122 (140)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 267
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=72.95 E-value=10 Score=37.90 Aligned_cols=76 Identities=25% Similarity=0.380 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhcCCChh-HHHHHHHHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhh
Q 005727 72 NQIFDALCKLSADSDAN-VQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDML 150 (680)
Q Consensus 72 ~eIfd~L~kL~aD~d~~-Vr~gA~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li 150 (680)
++.++.+.+.+.=.++. |+++-..|. .=...+...-+.+|...+. ++.||++||.++. +.++.++.
T Consensus 43 p~aL~~~L~sv~W~~~~e~~e~~~ll~--------~W~~~~~~~aL~LL~~~~~--~~~Vr~yAV~~L~---~~~d~~l~ 109 (184)
T smart00145 43 PKALPKFLLSVNWSDADEVAQALSLLK--------KWAPLDPEDALELLSPKFP--DPFVRAYAVERLE---SASDEELL 109 (184)
T ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHH--------cCCCCCHHHHHHHhCccCC--CHHHHHHHHHHHH---hCCHHHHH
Confidence 45555555545544443 444323222 1123445556777766555 7999999998875 57888999
Q ss_pred hchHHHHHHH
Q 005727 151 GFLPDFLDGL 160 (680)
Q Consensus 151 ~~Lp~~L~~L 160 (680)
.|+|.+++.|
T Consensus 110 ~yLpQLVQaL 119 (184)
T smart00145 110 LYLLQLVQAL 119 (184)
T ss_pred HHHHHHHHHH
Confidence 9999999977
No 268
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=72.28 E-value=19 Score=31.68 Aligned_cols=63 Identities=21% Similarity=0.194 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCCh--hHHHHH-HHHHHHHHHHh
Q 005727 42 SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDA--NVQSAA-HLLDRLVKDIV 104 (680)
Q Consensus 42 ~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~--~Vr~gA-~~Ldrllkdiv 104 (680)
.|.+..+|.+|+..|..|.+.....--.--+.|...+.+.+.|++. ...-|| .+|..+-.+.+
T Consensus 16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~v 81 (92)
T PF07571_consen 16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEAV 81 (92)
T ss_pred CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3778999999999999998766543323346899999999987764 577888 66666644433
No 269
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=71.98 E-value=58 Score=31.07 Aligned_cols=76 Identities=16% Similarity=0.230 Sum_probs=59.5
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHHhhcC
Q 005727 114 EFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNS 189 (680)
Q Consensus 114 ~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~L--p~~L~~Lf~lLsD-~~~dVR~~a~~~L~~fL~ei~~~ 189 (680)
.-+..|..|+...||.+-..++..+..+.+-.+..+...+ -+|++.|.+++.+ +++.||+.+..++..--..++..
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 3466678888999999999999999999887775544322 4788888888874 77899998888888888777643
No 270
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=71.66 E-value=6.3 Score=29.59 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=30.4
Q ss_pred HHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 005727 303 ISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVH 344 (680)
Q Consensus 303 L~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lL 344 (680)
++.+.+..|.-+.. +.+...+.+.|.|+++.||..+++++
T Consensus 3 l~~iv~~dp~ll~~--~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLLDS--SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccccch--HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 45566666555432 37888999999999999999998764
No 271
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.59 E-value=3.5e+02 Score=36.14 Aligned_cols=192 Identities=15% Similarity=0.173 Sum_probs=122.1
Q ss_pred HHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHH--HHHHHHHHhhcCC---CCC---hHH-HHHHHHHhcCC
Q 005727 137 WITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADS--ALWEFLQEIKNSP---SVD---YGR-MAEILVQRAAS 207 (680)
Q Consensus 137 wI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~--~L~~fL~ei~~~~---~~d---~~~-II~iLl~~~~s 207 (680)
|..++-.+++.-....+..+.+..++..+-.-..|+-.+-. ++-.+++-+.... ... +.+ ....++..+..
T Consensus 808 fg~vfp~v~~k~~~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~lg~e~v~~~~~~l~~~sl~~ 887 (2067)
T KOG1822|consen 808 FGSVFPHVNNKIRLSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSLGPEEVRSSALTLIVNSLIN 887 (2067)
T ss_pred HHHhccCccHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhhhhcc
Confidence 44455555554444444444444444444455566644333 5555555443211 111 222 33344556777
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHH-HHHHHHHhccCCCCCCChHhHHHHHHH
Q 005727 208 PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARE-TNEELRAIKADPADGFDVGPILSIATR 286 (680)
Q Consensus 208 ~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~-~n~~Ll~~v~~~~~~ldl~~iL~vL~~ 286 (680)
+++-.|-.+-+.++.++...+.. ||+..+....++.+++..+.++++... +.+.+.+-++..+..-.+..-+.++..
T Consensus 888 ~~p~~rc~~~ea~arLaq~v~~~--~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illa 965 (2067)
T KOG1822|consen 888 PNPKLRCAAAEALARLAQVVGSA--PFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLA 965 (2067)
T ss_pred CChHHHHHHHHHHHHHHHhcccc--chHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHH
Confidence 88888888888888888887754 789999999999999988777776654 566677777665554445554555655
Q ss_pred hcCCCcH-HHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcC
Q 005727 287 QLSSEWE-ATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS 330 (680)
Q Consensus 287 ~L~~~~~-~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~Ls 330 (680)
.-.|++. .++..+|..+..+.+....-..-+.+.....+++.|-
T Consensus 966 l~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLl 1010 (2067)
T KOG1822|consen 966 LATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLL 1010 (2067)
T ss_pred HhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcC
Confidence 5566554 6899999999999888766666666666665555543
No 272
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=71.09 E-value=21 Score=35.63 Aligned_cols=133 Identities=14% Similarity=0.014 Sum_probs=79.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCC-chhHHHHH-HHHHHHHHHhccCCC
Q 005727 195 GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDK-EEKIRVVA-RETNEELRAIKADPA 272 (680)
Q Consensus 195 ~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds-~~eIR~~A-~~~n~~Ll~~v~~~~ 272 (680)
+........-.+++..+.+..|+..+...... +-+..++.+-..+.+- +=++-+.. ....+.+...
T Consensus 50 ~~~~~l~~~L~~~~~~E~~~la~~il~~~~~~-------~~~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~----- 117 (213)
T PF08713_consen 50 EELYELADELWESGYREERYLALLILDKRRKK-------LTEEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKK----- 117 (213)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG---------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHH-----
T ss_pred hHHHHHHHHHcCCchHHHHHHHHHHhHHHhhh-------hhHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHh-----
Confidence 44444444555667778888877766532211 1223444444444432 22333332 2222221111
Q ss_pred CCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005727 273 DGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (680)
Q Consensus 273 ~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~ 349 (680)
.+...+.+.+-..+++..+|.+++.-+...... ...+.++..+-..+.|++.-|+...-|+|..++.
T Consensus 118 ----~~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~ 184 (213)
T PF08713_consen 118 ----HPEALELLEKWAKSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGK 184 (213)
T ss_dssp ----HGGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCT
T ss_pred ----hHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 155777888888888888888876544433333 6677888888888899999999999999999994
No 273
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=70.17 E-value=2e+02 Score=32.70 Aligned_cols=179 Identities=15% Similarity=0.090 Sum_probs=94.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCcc---cccch---HhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHH
Q 005727 209 DEFTRLTAITWINEFVKLGGDQ---LVPYY---ADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILS 282 (680)
Q Consensus 209 d~~irl~Al~WL~e~~~l~~~~---l~pfL---p~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~ 282 (680)
++++...++.-+.++++..+.. |..+. |......++.+..++.-|...|......++..-.......+.+.+++
T Consensus 67 ~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~ 146 (429)
T cd00256 67 KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFN 146 (429)
T ss_pred cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHH
Confidence 3445555566666655544321 11110 22233334445555666777777766655432221112223455667
Q ss_pred HHHHhcCCC-cHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCC---HHHHH--HHHHHHHHHhhccchH--
Q 005727 283 IATRQLSSE-WEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPS---DEVVL--LVLEVHACIAKDLQHF-- 354 (680)
Q Consensus 283 vL~~~L~~~-~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s---~eV~~--~al~lLa~Is~~~~~F-- 354 (680)
.+...+.+. +...+..|+.-+..+....+....=.-.+.++.|.+.|+... ...-+ -++|+|+--.+....+
T Consensus 147 ~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~ 226 (429)
T cd00256 147 WLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKR 226 (429)
T ss_pred HHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhcc
Confidence 788888754 344566666777777666554421111225667777665433 11111 4567776433322222
Q ss_pred HHHHHHHHHhhcccchhHHhHHHH-HHHHHHhhc
Q 005727 355 RQLVVFLVHNFRVDNSLLEKRGAL-IIRRLCVLL 387 (680)
Q Consensus 355 ~~fm~~LL~lf~~d~~lLe~rg~~-IIrqLc~~L 387 (680)
..+++.+.+.+++..|.-=.|..+ ++|+|...-
T Consensus 227 ~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~ 260 (429)
T cd00256 227 LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKR 260 (429)
T ss_pred ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcc
Confidence 347888888887765533346555 888888753
No 274
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=69.47 E-value=1.9e+02 Score=32.07 Aligned_cols=91 Identities=12% Similarity=0.101 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh---hccchHHHHHHHHHHhhcccchh
Q 005727 295 TRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA---KDLQHFRQLVVFLVHNFRVDNSL 371 (680)
Q Consensus 295 tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is---~~~~~F~~fm~~LL~lf~~d~~l 371 (680)
+-...+..+.-+...+|+.|..+.+.-+|.++..+-+....++.++..++.... ..+..+.+.+...++.-..+.+
T Consensus 150 i~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~- 228 (372)
T PF12231_consen 150 IISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGK- 228 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcccccccc-
Confidence 455677788899999999999999999999999999999999998877766655 3344444444444443332222
Q ss_pred HHhHHHHHHHHHHhhcCh
Q 005727 372 LEKRGALIIRRLCVLLDA 389 (680)
Q Consensus 372 Le~rg~~IIrqLc~~L~~ 389 (680)
-++++..+|-..+..
T Consensus 229 ---~~~~~~~~L~~mi~~ 243 (372)
T PF12231_consen 229 ---LIQLYCERLKEMIKS 243 (372)
T ss_pred ---HHHHHHHHHHHHHhC
Confidence 345555555554443
No 275
>PF14750 INTS2: Integrator complex subunit 2
Probab=69.31 E-value=3.2e+02 Score=34.71 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=33.4
Q ss_pred HHHHHHh-hccchHHHHHHHHHHhh--cccchhHHhHHHHHHHHHHhhcCh
Q 005727 342 EVHACIA-KDLQHFRQLVVFLVHNF--RVDNSLLEKRGALIIRRLCVLLDA 389 (680)
Q Consensus 342 ~lLa~Is-~~~~~F~~fm~~LL~lf--~~d~~lLe~rg~~IIrqLc~~L~~ 389 (680)
+++.++. ++.+.|..++..|+..- .++....++....+++.||..-+.
T Consensus 179 ~li~~LvaN~Pd~f~~vv~~LI~~~e~~de~s~~gr~R~~~L~~L~~m~Ps 229 (1049)
T PF14750_consen 179 WLICRLVANMPDSFEEVVNSLISNGERQDEESSRGRQRNETLRKLCKMNPS 229 (1049)
T ss_pred HHHHHHHhcCchhHHHHHHHHHhccccccccccchHHHHHHHHHHHHhChH
Confidence 5677655 66788999999999765 122323233347899999987665
No 276
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=68.75 E-value=73 Score=29.07 Aligned_cols=70 Identities=13% Similarity=0.198 Sum_probs=50.6
Q ss_pred hHhHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCC-CHHH-HHHHHHHHHHHhhcc
Q 005727 277 VGPILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDP-SDEV-VLLVLEVHACIAKDL 351 (680)
Q Consensus 277 l~~iL~vL~~~L~-~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~-s~eV-~~~al~lLa~Is~~~ 351 (680)
+..++|.+...+. +...+.|.++..-++.++.+. +..++++.++++++... .+.- ...++-+|..++...
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~-----~L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKV-----PLSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhc-----CCcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 4678899999998 777889999999999999998 66677777666655432 2222 356777777777433
No 277
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=68.72 E-value=2.7e+02 Score=33.70 Aligned_cols=161 Identities=14% Similarity=0.250 Sum_probs=96.8
Q ss_pred HHHHHHHH--HhhcCCChhHHHHHHHHHHHHHHHhhccccccH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcC----
Q 005727 72 NQIFDALC--KLSADSDANVQSAAHLLDRLVKDIVTESDQFSI-EEFIPLLRERMNVLNPYVRQFLVGWITVLDSV---- 144 (680)
Q Consensus 72 ~eIfd~L~--kL~aD~d~~Vr~gA~~Ldrllkdiv~es~~f~L-~~fIP~L~e~i~~~np~vR~~avswI~~L~si---- 144 (680)
..++++|+ .++.|++ .+| ..++..++.+..... ..+ ..++|-+.-.+-+.+|..|.+|..|+..+...
T Consensus 80 ~aiyE~L~~p~lLr~~~-~l~---~~F~~~f~~~~~~~~-~~~~~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~ 154 (727)
T PF12726_consen 80 LAIYECLCNPALLRDDE-ELR---ELFDAIFSSLQSKKP-LKLPKELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSI 154 (727)
T ss_pred HHHHHHHhCHHHHcCcH-HHH---HHHHHHHHHHhccCC-ccccccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCC
Confidence 45677776 3444443 233 236666666655433 333 78899999999999999999999999999874
Q ss_pred Cchhhh-hchHHHHHHHHHh-cCCCChhHHHHHHHHHHHHHHHhhcC------CCCChHHHHHHHHHhcCCCCHHHHHHH
Q 005727 145 PDIDML-GFLPDFLDGLFNM-LSDSSHEIRQQADSALWEFLQEIKNS------PSVDYGRMAEILVQRAASPDEFTRLTA 216 (680)
Q Consensus 145 p~~~Li-~~Lp~~L~~Lf~l-LsD~~~dVR~~a~~~L~~fL~ei~~~------~~~d~~~II~iLl~~~~s~d~~irl~A 216 (680)
+..++- .+.+.+...+.++ -+..+++.-..=.+.+..+++.+... ....+.+++..++.++.+..+..-...
T Consensus 155 t~~~~~~av~~~l~~~l~~i~~~~~~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~l 234 (727)
T PF12726_consen 155 TDEEFDWAVLDELSSHLYRISPNNYNPDSVIRFWSGFSLILRLLDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPIL 234 (727)
T ss_pred chhhhhHHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHccHHHHHHHHhccccchHHHHHHHHhhcccchhHHHH
Confidence 455553 3555666666666 11123332222334444444333221 012345588899999988743334456
Q ss_pred HHHHHHHHHhcCcc----cccchHh
Q 005727 217 ITWINEFVKLGGDQ----LVPYYAD 237 (680)
Q Consensus 217 l~WL~e~~~l~~~~----l~pfLp~ 237 (680)
+.-+..+++..|.+ +-|+.|.
T Consensus 235 L~~l~~lL~k~~~~FW~~~~~~~p~ 259 (727)
T PF12726_consen 235 LRCLSILLEKLGSDFWDAMGPISPQ 259 (727)
T ss_pred HHHHHHHHHhCHHHHhcccCCCCHH
Confidence 66777777776644 3456565
No 278
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=68.10 E-value=8.2 Score=27.49 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005727 320 DIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 320 ~l~p~LL~~LsD~s~eV~~~al~lLa~Is 348 (680)
+.+|.|++.|..++++++..++|+|..++
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 36788888898889999999999999876
No 279
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=67.67 E-value=27 Score=32.28 Aligned_cols=124 Identities=20% Similarity=0.269 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC--CC--------------C
Q 005727 129 YVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS--PS--------------V 192 (680)
Q Consensus 129 ~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~--~~--------------~ 192 (680)
.+|..+...+..+... +.-...|++++.+++.+.. ++......-..|..+.+++.+. .. -
T Consensus 3 ~i~~kl~~~l~~i~~~---~~P~~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKR---DWPQQWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp HHHHHHHHHHHHHHHH---HTTTTSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH---HChhhCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 4555555555544321 1123567788888877766 4566666778888888888641 11 1
Q ss_pred ChHHHHHHHHHhcCCCC----HHHHHHHHHHHHHHHHhcCcc-cccchHhHHHHHhhhhcCCchhHHHHHHHH
Q 005727 193 DYGRMAEILVQRAASPD----EFTRLTAITWINEFVKLGGDQ-LVPYYADILGAILPCISDKEEKIRVVARET 260 (680)
Q Consensus 193 d~~~II~iLl~~~~s~d----~~irl~Al~WL~e~~~l~~~~-l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~ 260 (680)
..+.+++++...+.... ++....+++-++.++...+.. +.. +.+++.++..+.+ ++.+..|.++
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~--~~~l~~~~~~l~~--~~~~~~A~~c 147 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN--SNLLNLIFQLLQS--PELREAAAEC 147 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS--SSHHHHHHHHTTS--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc--HHHHHHHHHHcCC--HHHHHHHHHh
Confidence 24556666655544332 666777777666665543322 222 3488888888844 4457777765
No 280
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=67.38 E-value=4e+02 Score=35.10 Aligned_cols=143 Identities=17% Similarity=0.193 Sum_probs=89.1
Q ss_pred hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC
Q 005727 149 MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG 228 (680)
Q Consensus 149 Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~ 228 (680)
+-.|+|.++.-.=.++.-+++.|+..+......+-.... ...=++++..|+.++.++++.-..+|+.-+..++...+
T Consensus 429 L~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd---s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~~ 505 (1426)
T PF14631_consen 429 LKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD---SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKNP 505 (1426)
T ss_dssp HTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhccH
Confidence 456888888877788888899999887766555544221 11237899999999877766545678888888888888
Q ss_pred cccccchHhHHHHHhhhhcC-CchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHH
Q 005727 229 DQLVPYYADILGAILPCISD-KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRI 297 (680)
Q Consensus 229 ~~l~pfLp~LLp~LL~~Lsd-s~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~ 297 (680)
..+.|| ...+.++|..|.+ +.+.||....-.- .+. .-......---+++-=++.+++.+.+...|.
T Consensus 506 ~~l~~f-a~~l~giLD~l~~Ls~~qiR~lf~il~-~La-~~~~~~~s~i~del~ivIRKQLss~~~~~K~ 572 (1426)
T PF14631_consen 506 SELQPF-ATFLKGILDYLDNLSLQQIRKLFDILC-TLA-FSDSSSSSSIQDELHIVIRKQLSSSNPKYKR 572 (1426)
T ss_dssp HHHHHT-HHHHHGGGGGGGG--HHHHHHHHHHHH-HHH-HHHSS---HHHHHHHHHHHHHHT-SSHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHH-HHh-cCCcccchhhHHHHHHHHHHhhcCCcHHHHH
Confidence 888888 5566667777764 4678887754322 111 1111111101144555788899888776543
No 281
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=66.83 E-value=24 Score=35.18 Aligned_cols=36 Identities=19% Similarity=0.373 Sum_probs=30.9
Q ss_pred hchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHh
Q 005727 151 GFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEI 186 (680)
Q Consensus 151 ~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei 186 (680)
.|-..++.||.--.+..++++.+.+..+|-.++++.
T Consensus 83 ~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~ 118 (193)
T PF12612_consen 83 EYRYSLLSGLVVSAGGLTESLVRASSAALLSYLREL 118 (193)
T ss_pred HHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHh
Confidence 577789999999999988888888888888888755
No 282
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=66.50 E-value=79 Score=30.09 Aligned_cols=75 Identities=11% Similarity=0.164 Sum_probs=56.4
Q ss_pred hHHHHHHHhc-CCCHHHHHHHHHHHHHhhcCCchhhhhchH--HHHHH-HHHhcCC---CChhHHHHHHHHHHHHHHHhh
Q 005727 115 FIPLLRERMN-VLNPYVRQFLVGWITVLDSVPDIDMLGFLP--DFLDG-LFNMLSD---SSHEIRQQADSALWEFLQEIK 187 (680)
Q Consensus 115 fIP~L~e~i~-~~np~vR~~avswI~~L~sip~~~Li~~Lp--~~L~~-Lf~lLsD---~~~dVR~~a~~~L~~fL~ei~ 187 (680)
-+..|..|+. ..||.+-..++..+..+.+-.+..+-..+- +|++. |.+++++ ++.+|++.+.+++...-..++
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~ 118 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFR 118 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhC
Confidence 3556677776 478999999999999998888866654332 77776 7778764 456899988888888887776
Q ss_pred cC
Q 005727 188 NS 189 (680)
Q Consensus 188 ~~ 189 (680)
..
T Consensus 119 ~~ 120 (141)
T cd03565 119 GS 120 (141)
T ss_pred CC
Confidence 54
No 283
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=66.10 E-value=38 Score=40.56 Aligned_cols=86 Identities=20% Similarity=0.233 Sum_probs=62.8
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhH-HHHHHHHHhcC-CCCHHHHHHHHHHHHHHh-----hc
Q 005727 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN-DIFDTLLKALS-DPSDEVVLLVLEVHACIA-----KD 350 (680)
Q Consensus 278 ~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~-~l~p~LL~~Ls-D~s~eV~~~al~lLa~Is-----~~ 350 (680)
..++..|...+.. ...|..+|..|+.++...|.-+-...+ .+|+.|++||. |.+..|+..|+-+|.-+- ..
T Consensus 69 K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l 146 (668)
T PF04388_consen 69 KHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSL 146 (668)
T ss_pred HHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchh
Confidence 4677777777775 468999999999999999887765554 68999999996 667888888887766544 23
Q ss_pred cchHHHHHHHHHHhh
Q 005727 351 LQHFRQLVVFLVHNF 365 (680)
Q Consensus 351 ~~~F~~fm~~LL~lf 365 (680)
.+|+..++.....+.
T Consensus 147 ~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 147 GPHLPDLFNIFGRLL 161 (668)
T ss_pred hHHHHHHHHHHHHHH
Confidence 445555554444444
No 284
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=65.92 E-value=51 Score=31.57 Aligned_cols=72 Identities=17% Similarity=0.098 Sum_probs=58.5
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhh--hHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHh
Q 005727 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF--LNDIFDTLLKALSD-PSDEVVLLVLEVHACIA 348 (680)
Q Consensus 277 l~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~--l~~l~p~LL~~LsD-~s~eV~~~al~lLa~Is 348 (680)
-...+..|...+.+.+..+...||..|-++.+.|+..+... ..+++..|.+.+++ ..+.|+.+.+.++..-+
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 35788899999999999999999999999999999977533 33566778888888 57888888888766555
No 285
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.75 E-value=61 Score=41.78 Aligned_cols=71 Identities=10% Similarity=0.165 Sum_probs=60.1
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 005727 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEF 182 (680)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~f 182 (680)
+..++-.++....+.++.+|+.|+..+..+.+.-+...+..+|+.+|-|-.++.|.+.+|-.+++.....+
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~ 1609 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQL 1609 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 55556666666678889999999999999999999999999999999999999999999988876644433
No 286
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=65.51 E-value=1.9e+02 Score=30.61 Aligned_cols=107 Identities=23% Similarity=0.261 Sum_probs=71.5
Q ss_pred CcHHHHHHHHHHHHHHHhhChhhHhhhh--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccc----------hHH---
Q 005727 291 EWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQ----------HFR--- 355 (680)
Q Consensus 291 ~~~~tR~aaL~WL~~L~~~~p~~~~~~l--~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~~~----------~F~--- 355 (680)
+.+-.|+++|..++++.+...+++..++ .+++|..++.+..-|+.-...|.-.+.+|-.++. -|-
T Consensus 137 ~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~ 216 (293)
T KOG3036|consen 137 PFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVA 216 (293)
T ss_pred chHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHH
Confidence 3466899999999999999999988875 4789999999998888877788888887763321 121
Q ss_pred HHHHHHHHhhccc--chhHHhHHHHHHHHHHhhcChhhHHHHHHHhhc
Q 005727 356 QLVVFLVHNFRVD--NSLLEKRGALIIRRLCVLLDAERVYRELSTILE 401 (680)
Q Consensus 356 ~fm~~LL~lf~~d--~~lLe~rg~~IIrqLc~~L~~e~Iy~~La~iL~ 401 (680)
.++.+++..+.+. .++++ -+||=.-.+-+.-+++..+..++-
T Consensus 217 ~~L~kmv~~l~~~ps~RllK----hviRcYlrLsdnprar~aL~~clP 260 (293)
T KOG3036|consen 217 LVLGKMVFQLVSMPSPRLLK----HVIRCYLRLSDNPRARAALRSCLP 260 (293)
T ss_pred HHHHHHHHHHhcCCCHHHHH----HHHHHHHHhcCCHHHHHHHHhhCc
Confidence 2344444444332 23333 345544444444577777777763
No 287
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=64.78 E-value=11 Score=28.24 Aligned_cols=29 Identities=31% Similarity=0.260 Sum_probs=23.9
Q ss_pred hhchHHHHHHHHHhcCCCChhHHHHHHHH
Q 005727 150 LGFLPDFLDGLFNMLSDSSHEIRQQADSA 178 (680)
Q Consensus 150 i~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~ 178 (680)
+-.-+.+.+.+.+-+.|+++.||++|-++
T Consensus 13 ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 13 LLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred ccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 33456889999999999999999998554
No 288
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=64.57 E-value=1.8e+02 Score=30.12 Aligned_cols=147 Identities=13% Similarity=0.128 Sum_probs=77.5
Q ss_pred hcCCCChhHHHHHHHHHHHHHHHhhcCCCC---------ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc--Cccc
Q 005727 163 MLSDSSHEIRQQADSALWEFLQEIKNSPSV---------DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLG--GDQL 231 (680)
Q Consensus 163 lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~---------d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~--~~~l 231 (680)
++.|.++.|.+.+..|...+-+.+-+.... .+..+-+.++....+.++.+|..|+..+..++.+. +..-
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~ 80 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSD 80 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCC
Confidence 467888888777666666554443211101 14556667778888888999999999998876542 1110
Q ss_pred ccc-hHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCc--HHHHHHHHHHHHHHHh
Q 005727 232 VPY-YADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW--EATRIEALHWISTLLN 308 (680)
Q Consensus 232 ~pf-Lp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~--~~tR~aaL~WL~~L~~ 308 (680)
-+. .+.=-..=+..+..+++-++....+.-+ ..+++.|...+.++. ...=.+++.+|..++.
T Consensus 81 ~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea---------------~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak 145 (239)
T PF11935_consen 81 SPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEA---------------NGLLDRLLDVLQSPHISSPLLTAIINSLSNIAK 145 (239)
T ss_dssp S---GGGTTS--GGGS-TT-SSS-HHHHHHHH---------------HHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHH
T ss_pred CccccccccCCCHHHcCCCCCcCCHHHHHHHH---------------HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 000 0000000011112222322222111111 245566666666555 4567888899999999
Q ss_pred hChhhHhhhhHHHHHHHHHh
Q 005727 309 RHRTEVLHFLNDIFDTLLKA 328 (680)
Q Consensus 309 ~~p~~~~~~l~~l~p~LL~~ 328 (680)
.-|.- .+.++++|++.
T Consensus 146 ~RP~~----~~~Il~~ll~~ 161 (239)
T PF11935_consen 146 QRPQF----MSRILPALLSF 161 (239)
T ss_dssp HSGGG----HHHHHHHHHHH
T ss_pred HhhHH----HHHHHHHHHhc
Confidence 98753 45566666644
No 289
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=64.24 E-value=3.3e+02 Score=32.96 Aligned_cols=108 Identities=26% Similarity=0.285 Sum_probs=66.9
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHHhhccc--hhhhHHH--HHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhccc
Q 005727 34 VPPVLNSFSDQDSRVRYYACEALYNIAKVVRGD--FIIFFNQ--IFDALCKLSADSDANVQSAA-HLLDRLVKDIVTESD 108 (680)
Q Consensus 34 v~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~--il~~f~e--Ifd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~ 108 (680)
+|.++.++..+++.|.--|+--+-.+. .|. +.....+ =++.|+.++..+..+|+++| .+|-+++-+--..++
T Consensus 235 lpe~i~mL~~q~~~~qsnaaaylQHlc---fgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQSNAAAYLQHLC---FGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred cHHHHHHHhccChhhhHHHHHHHHHHH---hhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 477888888888888877764444432 221 1111111 13456777888889999999 777777553333211
Q ss_pred cccH--hhhHHHHHHHhcC-CCHHHHHHHHHHHHHhhcC
Q 005727 109 QFSI--EEFIPLLRERMNV-LNPYVRQFLVGWITVLDSV 144 (680)
Q Consensus 109 ~f~L--~~fIP~L~e~i~~-~np~vR~~avswI~~L~si 144 (680)
.-++ -.=||.+.+.++. .|-.||+.+-+.+-+|.+.
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch
Confidence 1111 0126777777764 7889999998888888766
No 290
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=63.40 E-value=2.6e+02 Score=31.57 Aligned_cols=270 Identities=13% Similarity=0.125 Sum_probs=132.8
Q ss_pred HHHHHHhhcCCChhHHH-HHHHHHHHHHHHhhccccccHhhhHHHHHHHhcC-CCHHHHHHHHHHHHHhhcCCchhhhhc
Q 005727 75 FDALCKLSADSDANVQS-AAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNV-LNPYVRQFLVGWITVLDSVPDIDMLGF 152 (680)
Q Consensus 75 fd~L~kL~aD~d~~Vr~-gA~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~-~np~vR~~avswI~~L~sip~~~Li~~ 152 (680)
+..-.+++.+.|.-..+ ++..+..+.+--.+..+.-.++.+...|.+.++. .++..+++++.++..+..++..-..-.
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v 195 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFV 195 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheee
Confidence 44445667777776666 5566666554222222233456677777777776 888999999999999888877433222
Q ss_pred hHHHHHHHHHhcCC--CChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHhcCc
Q 005727 153 LPDFLDGLFNMLSD--SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASP-DEFTRLTAITWINEFVKLGGD 229 (680)
Q Consensus 153 Lp~~L~~Lf~lLsD--~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~-d~~irl~Al~WL~e~~~l~~~ 229 (680)
.-+=...|...+.. .+-.+.-...-|+-.+-=.=........-++|+.|..-+++. .|-|-..++..+..++.-+++
T Consensus 196 ~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~ 275 (442)
T KOG2759|consen 196 IADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPD 275 (442)
T ss_pred ecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 21111111222211 111222333333332210000000000112233333322221 123333345555555544431
Q ss_pred c----------cccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccC-------------------C---CCC---
Q 005727 230 Q----------LVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKAD-------------------P---ADG--- 274 (680)
Q Consensus 230 ~----------l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~-------------------~---~~~--- 274 (680)
. +...+|+.+..+. .=.++++|+++--...-..+-+.+.+ | .+.
T Consensus 276 ~~~~k~~~~~mv~~~v~k~l~~L~-~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~ 354 (442)
T KOG2759|consen 276 RETKKDIASQMVLCKVLKTLQSLE-ERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWR 354 (442)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHH-hcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHH
Confidence 1 1112333333322 22466777665432222222211111 0 000
Q ss_pred -----C--ChHhHHHHHHHhcCCCcHHH--HHHHHHHHHHHHhhChhhHhhhhHH--HHHHHHHhcCCCCHHHHHHHHHH
Q 005727 275 -----F--DVGPILSIATRQLSSEWEAT--RIEALHWISTLLNRHRTEVLHFLND--IFDTLLKALSDPSDEVVLLVLEV 343 (680)
Q Consensus 275 -----l--dl~~iL~vL~~~L~~~~~~t--R~aaL~WL~~L~~~~p~~~~~~l~~--l~p~LL~~LsD~s~eV~~~al~l 343 (680)
+ |=-+++.+|...|..++.++ -+| ..=+|++.+.+|++-.- +++ -=..+++.|+.++|+|+-.|+.+
T Consensus 355 eNa~rlnennyellkiL~~lLe~s~Dp~iL~VA-c~DIge~Vr~yP~gk~v-v~k~ggKe~vM~Llnh~d~~Vry~ALla 432 (442)
T KOG2759|consen 355 ENADRLNENNYELLKILIKLLETSNDPIILCVA-CHDIGEYVRHYPEGKAV-VEKYGGKERVMNLLNHEDPEVRYHALLA 432 (442)
T ss_pred HhHHHHhhccHHHHHHHHHHHhcCCCCceeehh-hhhHHHHHHhCchHhHH-HHHhchHHHHHHHhcCCCchHHHHHHHH
Confidence 0 12368999999998666442 333 34578899999887421 111 12368899999999999988877
Q ss_pred HHHH
Q 005727 344 HACI 347 (680)
Q Consensus 344 La~I 347 (680)
.-++
T Consensus 433 vQ~l 436 (442)
T KOG2759|consen 433 VQKL 436 (442)
T ss_pred HHHH
Confidence 6654
No 291
>PF14745 WASH-7_N: WASH complex subunit 7, N-terminal
Probab=63.30 E-value=47 Score=39.03 Aligned_cols=68 Identities=29% Similarity=0.370 Sum_probs=50.7
Q ss_pred HHhchHHHHHHHHHHhhccCCcchHHHHHHHHHHhccChhHHHHHHHHhhhhHHHHHHHHHHhhcCcchhhHHhHHHHHH
Q 005727 419 ILLTSSELSELRDLLKKSLVNPAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQLDKLIR 498 (680)
Q Consensus 419 iLLTa~EL~~lR~~L~~~l~~~~~~~lF~~L~~~w~~n~v~~~slcll~~~Y~~a~~ll~~~~~~~~~~~~l~qid~LVq 498 (680)
+++|=.|..+-...|++ .|..|....+++-|||- .++++.+.+-++++++.
T Consensus 167 vlvtlDeIi~~n~~L~~------~w~~ykr~l~~v~~np~-----------------------~f~~~~~~l~~le~ll~ 217 (567)
T PF14745_consen 167 VLVTLDEIIEQNPSLRD------HWSLYKRMLKSVRHNPS-----------------------KFGVTEEKLRQLEKLLA 217 (567)
T ss_pred HHHHHHHHHHhhHHHHH------HHHHHHHHHHHHhcChh-----------------------hcCCCHHHHHHHHHHHH
Confidence 34455555554556666 89999999999999998 67888888888888874
Q ss_pred -----hhccchhHHHHHHhcCC
Q 005727 499 -----LLETPIFAYLRLQLLEP 515 (680)
Q Consensus 499 -----LlEsPif~~lRlqLLe~ 515 (680)
+++..+|...==|..+.
T Consensus 218 ~le~~ll~g~iF~~~~eq~fd~ 239 (567)
T PF14745_consen 218 DLEGQLLDGNIFQRCLEQLFDD 239 (567)
T ss_pred HHHHHhhcchHHHHHHHHhccc
Confidence 56667777666677774
No 292
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=63.08 E-value=2.3e+02 Score=30.72 Aligned_cols=108 Identities=16% Similarity=0.171 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHhcCC
Q 005727 130 VRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAAS 207 (680)
Q Consensus 130 vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD-~~~dVR~~a~~~L~~fL~ei~~~~~~d-~~~II~iLl~~~~s 207 (680)
-|...++.+..+-. .+ .-+.+.+++..++.. .++.+......++..-+..+ +.+ -+.+++.+..-+++
T Consensus 3 ~r~~~~~~L~~l~~---~~---~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~ 72 (339)
T PF12074_consen 3 QRVLHASMLSSLPS---SS---LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKD 72 (339)
T ss_pred HHHHHHHHHHhCCC---cc---hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcC
Confidence 35555555554433 22 456778888887755 67777877766766665544 122 27788999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-hcCcccccchHhHHHHHhhhhc
Q 005727 208 PDEFTRLTAITWINEFVK-LGGDQLVPYYADILGAILPCIS 247 (680)
Q Consensus 208 ~d~~irl~Al~WL~e~~~-l~~~~l~pfLp~LLp~LL~~Ls 247 (680)
..+.+|..-+.++++... .+.....++...++|.++..+.
T Consensus 73 kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 113 (339)
T PF12074_consen 73 KKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLK 113 (339)
T ss_pred CCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHH
Confidence 988899987777776654 1223455666666666666553
No 293
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=62.85 E-value=1.8e+02 Score=29.46 Aligned_cols=180 Identities=16% Similarity=0.125 Sum_probs=95.9
Q ss_pred hhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCc
Q 005727 150 LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD 229 (680)
Q Consensus 150 i~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~ 229 (680)
...+..|+..-+.+++=+.|++|+.+-..+ ++.+. .+.+.....+-.-.+++..|.|..|+.++........
T Consensus 7 a~~m~~y~k~~~~f~Gv~~P~~R~lak~~~----~~~~~---~~~~~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~- 78 (208)
T cd07064 7 AAAMKAYMKNQFPFYGIKTPERRALSKPFL----KESKL---PDKEELWELVLELWQQPEREYQYVAIDLLRKYKKFLT- 78 (208)
T ss_pred HHHHHHHHhcCCccCCCChHHHHHHHHHHH----HHcCC---CcHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCC-
Confidence 445666666667788888999998764432 32221 1223333333344456667889999887765433222
Q ss_pred ccccchHhHHHHHhhhhcCCc--hhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 005727 230 QLVPYYADILGAILPCISDKE--EKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLL 307 (680)
Q Consensus 230 ~l~pfLp~LLp~LL~~Lsds~--~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~ 307 (680)
+.-++.+...+.+-+ .-+=..|....+.+ +. +.+...+.+.+-..+++.-.|.+|+.-.....
T Consensus 79 ------~~~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~---~~------~~~~~~~~l~~W~~s~~~W~rR~ai~~~l~~~ 143 (208)
T cd07064 79 ------PEDLPLLEELITTKSWWDTVDSLAKVVGGIL---LA------DYPEFEPVMDEWSTDENFWLRRTAILHQLKYK 143 (208)
T ss_pred ------HHHHHHHHHHHcCCchHHHHHHHHHHHhHHH---Hh------CChhHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 222333333333211 11112222333322 11 13444566666677777666666654322222
Q ss_pred hhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-ccchHHHHH
Q 005727 308 NRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQHFRQLV 358 (680)
Q Consensus 308 ~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~-~~~~F~~fm 358 (680)
+. ...+.++..+...+.|+..-|.+..-|.|..++. +.+--..|+
T Consensus 144 ~~------~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~V~~fl 189 (208)
T cd07064 144 EK------TDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDWVRDFV 189 (208)
T ss_pred Hc------cCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 21 1134556666677777777777777899999994 333344444
No 294
>PF14961 BROMI: Broad-minded protein
Probab=62.23 E-value=4.4e+02 Score=33.78 Aligned_cols=69 Identities=28% Similarity=0.319 Sum_probs=54.8
Q ss_pred HhHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhChhhHh--hhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 005727 278 GPILSIATRQLSSE-WEATRIEALHWISTLLNRHRTEVL--HFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK 349 (680)
Q Consensus 278 ~~iL~vL~~~L~~~-~~~tR~aaL~WL~~L~~~~p~~~~--~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~ 349 (680)
++=++.+.+++..+ ..++|.+|++- |....|.++. +..+.+-..|...|+||++++...+++..++..+
T Consensus 160 qe~lq~i~d~ld~~~P~evR~eAlq~---Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fs 231 (1296)
T PF14961_consen 160 QEQLQLIADKLDPGQPKEVRLEALQI---LCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFS 231 (1296)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHH---HhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 45557888888644 45689998775 4556677774 6789999999999999999999999999888663
No 295
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=62.06 E-value=1.3e+02 Score=30.47 Aligned_cols=81 Identities=21% Similarity=0.179 Sum_probs=58.0
Q ss_pred hhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCc
Q 005727 150 LGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGD 229 (680)
Q Consensus 150 i~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~ 229 (680)
...-|.+.+.+.+...|.+.=+|+.|.-+ .+.-++ ..+.+.+..++...+.+++..|+...=-++.++..-.++
T Consensus 110 ~~~~~~~~~~l~~W~~s~~~W~rR~ai~~---~l~~~~---~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~ 183 (208)
T cd07064 110 LADYPEFEPVMDEWSTDENFWLRRTAILH---QLKYKE---KTDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPD 183 (208)
T ss_pred HhCChhHHHHHHHHHcCCcHHHHHHHHHH---HHHHHH---ccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHH
Confidence 45567777888899999999899887644 333232 357788888888888888888888554466777666676
Q ss_pred ccccchH
Q 005727 230 QLVPYYA 236 (680)
Q Consensus 230 ~l~pfLp 236 (680)
.+..|+.
T Consensus 184 ~V~~fl~ 190 (208)
T cd07064 184 WVRDFVA 190 (208)
T ss_pred HHHHHHH
Confidence 7666653
No 296
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=61.90 E-value=30 Score=33.40 Aligned_cols=46 Identities=30% Similarity=0.534 Sum_probs=34.7
Q ss_pred ccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHH
Q 005727 110 FSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGL 160 (680)
Q Consensus 110 f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~L 160 (680)
.+...-+..|...+ .++.||++||+++.. .++.++..|+|.+.+.|
T Consensus 69 ~~~~~aL~LL~~~~--~~~~vr~yAv~~L~~---~~~~~l~~ylpQLVQaL 114 (152)
T cd00864 69 LSPEDALELLSPKY--PDPVVRQYAVRVLES---ASDDELLLYLPQLVQAL 114 (152)
T ss_pred CCHHHHHHHcCCcC--CCHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHH
Confidence 33444566665544 359999999988864 77889999999999876
No 297
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=61.89 E-value=25 Score=34.72 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=35.1
Q ss_pred cHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHH
Q 005727 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF 161 (680)
Q Consensus 111 ~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf 161 (680)
+...-+.+|...+ .++.||++||+++.. .++.++..|+|.+.+.|-
T Consensus 70 ~~~~aLeLL~~~f--~d~~VR~yAV~~L~~---~sd~eL~~yL~QLVQaLK 115 (171)
T cd00872 70 KPEQALELLDCNF--PDEHVREFAVRCLEK---LSDDELLQYLLQLVQVLK 115 (171)
T ss_pred CHHHHHHHCCCcC--CCHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHH
Confidence 3444556665554 359999999999774 678999999999999765
No 298
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=60.69 E-value=1.1e+02 Score=29.11 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=55.8
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh--HHHHHHHHHhcCC------CCHHHHHHHHHHHHHHh
Q 005727 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDTLLKALSD------PSDEVVLLVLEVHACIA 348 (680)
Q Consensus 278 ~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l--~~l~p~LL~~LsD------~s~eV~~~al~lLa~Is 348 (680)
...+..+...+.+.+..+.+-||..|-++.+.|+..+-... .+.+..|++.+++ .++.|+.+.+.++..-+
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 46778899999999988999999999999999999875432 3455677777763 56889988887665544
No 299
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=60.68 E-value=57 Score=30.53 Aligned_cols=72 Identities=11% Similarity=0.066 Sum_probs=56.1
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhh-H-HHHHHHHHhcCC---CCHHHHHHHHHHHHHHh
Q 005727 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFL-N-DIFDTLLKALSD---PSDEVVLLVLEVHACIA 348 (680)
Q Consensus 277 l~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l-~-~l~p~LL~~LsD---~s~eV~~~al~lLa~Is 348 (680)
-...+..|...+.+.+..+...||..|-.+...|+..+...+ . +.+..|++.++. .+++|+.+.++++..-+
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999774332 2 344457777765 36789988887766544
No 300
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=60.42 E-value=16 Score=34.02 Aligned_cols=83 Identities=16% Similarity=0.249 Sum_probs=51.9
Q ss_pred HHHHhhcCCchhhhhchHHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHhcCCCCHHHHH
Q 005727 137 WITVLDSVPDIDMLGFLPDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNSPSV-DYGRMAEILVQRAASPDEFTRL 214 (680)
Q Consensus 137 wI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD-~~~dVR~~a~~~L~~fL~ei~~~~~~-d~~~II~iLl~~~~s~d~~irl 214 (680)
|..+.....+.+. +++..|+++|.. .++.+-..||.=++.|++..++...+ .--+.-+.++.-+.++|++||.
T Consensus 30 W~ENa~kf~~~~~-----~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~ 104 (119)
T PF11698_consen 30 WRENADKFEENNF-----ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRY 104 (119)
T ss_dssp HHHHSGGGSSGGG-----HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHH
T ss_pred HHHHHHHHHHccc-----HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHH
Confidence 4444444443332 567888888844 36667777888888888866432100 1122335566778889999999
Q ss_pred HHHHHHHHHH
Q 005727 215 TAITWINEFV 224 (680)
Q Consensus 215 ~Al~WL~e~~ 224 (680)
.|+..+..++
T Consensus 105 eAL~avQklm 114 (119)
T PF11698_consen 105 EALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887764
No 301
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.24 E-value=41 Score=43.22 Aligned_cols=77 Identities=19% Similarity=0.309 Sum_probs=63.8
Q ss_pred hhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhc
Q 005727 30 LQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTE 106 (680)
Q Consensus 30 L~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkdiv~e 106 (680)
+......++..-.|...++||.|..++..+.+..+.+.....++++|.|.+++.|.+..|...+..+-+.+++...|
T Consensus 1539 ~~pl~~k~l~~trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE 1615 (1621)
T KOG1837|consen 1539 LKPLNQKILKKTRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGE 1615 (1621)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhch
Confidence 66677778888899999999999989888888778888889999999999999999999987775566655554443
No 302
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=59.23 E-value=55 Score=28.40 Aligned_cols=69 Identities=19% Similarity=0.160 Sum_probs=57.8
Q ss_pred hHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 005727 279 PILSIATRQL-SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACI 347 (680)
Q Consensus 279 ~iL~vL~~~L-~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~I 347 (680)
.++..+...+ ...+.++|+-.++=+..+.+.+.+.+.+-.+.+|..+-...+|.++.++..|.+.+..|
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~I 86 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQLI 86 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhhC
Confidence 4455444443 34578899999999999999999999999999999999999999999999998877643
No 303
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=58.99 E-value=69 Score=28.89 Aligned_cols=72 Identities=14% Similarity=0.089 Sum_probs=54.3
Q ss_pred ChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHH-H-HHHHHH----hc--CCCCHHHHHHHHHHHHHH
Q 005727 276 DVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLND-I-FDTLLK----AL--SDPSDEVVLLVLEVHACI 347 (680)
Q Consensus 276 dl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~-l-~p~LL~----~L--sD~s~eV~~~al~lLa~I 347 (680)
....++..|...+.+.+|.+...||..+-.+...|++.+...+.. . .-.+++ .. .|.+..|+.++.+++...
T Consensus 34 ~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 34 GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999987765432 2 223332 11 245778999998877654
No 304
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=58.58 E-value=1.8e+02 Score=28.07 Aligned_cols=115 Identities=19% Similarity=0.168 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhc
Q 005727 209 DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQL 288 (680)
Q Consensus 209 d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L 288 (680)
+...|..+++.+..+++.+|..+..+- ..+ .+...++ +.+.+.+.+.+
T Consensus 35 ~~~~k~l~LeLl~~iL~~~~~~f~~~~-------------~~~-----------~l~~~lk--------~~l~~~Ll~~~ 82 (168)
T PF12783_consen 35 DERSKLLSLELLESILENHGSVFRSSE-------------EHP-----------SLINLLK--------DDLCPALLKNL 82 (168)
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHhCCc-------------chH-----------HHHHHHH--------HHHHHHHHHHH
Confidence 345677788888877777776654221 111 1112221 34555555555
Q ss_pred CCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHH-hcCCCC--HHHHHHHHHHHHHHhhccchHH
Q 005727 289 SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLK-ALSDPS--DEVVLLVLEVHACIAKDLQHFR 355 (680)
Q Consensus 289 ~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~-~LsD~s--~eV~~~al~lLa~Is~~~~~F~ 355 (680)
.+++..+=..+++-+..+.......+...++-+++.++. .++.+. ..-+..+++++.+++++.+.+.
T Consensus 83 ~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~ 152 (168)
T PF12783_consen 83 SSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLV 152 (168)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHH
Confidence 555566666788888888888888888888888888887 554333 3566689999999997554433
No 305
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=57.52 E-value=3.4e+02 Score=30.98 Aligned_cols=232 Identities=13% Similarity=0.066 Sum_probs=120.9
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcC---CCChhH--HHHHHHHHHHHHHHhh
Q 005727 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLS---DSSHEI--RQQADSALWEFLQEIK 187 (680)
Q Consensus 113 ~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLs---D~~~dV--R~~a~~~L~~fL~ei~ 187 (680)
++|...+...+.+.|...-....-.|++|....+.-+.-.=.+|+..|..++. |.+.+| ..+++++|..|.--+.
T Consensus 314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~ 393 (604)
T KOG4500|consen 314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS 393 (604)
T ss_pred cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence 45777778888888887777777788888766554333233456666665552 334444 4677778777763222
Q ss_pred cCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC---cccccchHhHHHHHhhhhcC--CchhHHHHHHHHHH
Q 005727 188 NSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG---DQLVPYYADILGAILPCISD--KEEKIRVVARETNE 262 (680)
Q Consensus 188 ~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~---~~l~pfLp~LLp~LL~~Lsd--s~~eIR~~A~~~n~ 262 (680)
+..++--..+++.++.......|.+...-+..++.+..--+ ..+.. =|+ ++..+.| ..++-..++.+.|.
T Consensus 394 nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~k-n~~----l~ekLv~Wsks~D~aGv~gESnR 468 (604)
T KOG4500|consen 394 NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAK-NPE----LFEKLVDWSKSPDFAGVAGESNR 468 (604)
T ss_pred chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhc-CHH----HHHHHHHhhhCCccchhhhhhhH
Confidence 22222235566677777666555554444444433221110 00000 012 2222221 12333344555555
Q ss_pred HHHHhccCCC-----CCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHH--HHHHHHhcCCCC--
Q 005727 263 ELRAIKADPA-----DGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDI--FDTLLKALSDPS-- 333 (680)
Q Consensus 263 ~Ll~~v~~~~-----~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l--~p~LL~~LsD~s-- 333 (680)
.+..+++-.. ..+.-...++.+...+..++..-...|+-.+..+..+++.....-++.. .-.|+++..++.
T Consensus 469 ll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~~~~~~yl~~~~kd~ea~~l~~~lik~~~~~~~a 548 (604)
T KOG4500|consen 469 LLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALLSTESKYLIVIGKDLEAVFLAILLIKHGYANVAA 548 (604)
T ss_pred HHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhhhhhhh
Confidence 5444443210 0111122355666666666766777788888877777766655444433 335567666652
Q ss_pred HHHHHHHHHHHHHHhh
Q 005727 334 DEVVLLVLEVHACIAK 349 (680)
Q Consensus 334 ~eV~~~al~lLa~Is~ 349 (680)
+.+-..+...+..|-+
T Consensus 549 ~~I~~~s~~~~k~~~E 564 (604)
T KOG4500|consen 549 TIIASPSYEALKSYRE 564 (604)
T ss_pred HHhcCcHHHHHHHHHH
Confidence 2333345555555554
No 306
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=56.51 E-value=29 Score=34.07 Aligned_cols=46 Identities=28% Similarity=0.497 Sum_probs=36.1
Q ss_pred cHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHH
Q 005727 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF 161 (680)
Q Consensus 111 ~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf 161 (680)
+...-+.+|...+ .++.||++||+++.. .++.++..|||.+++.|-
T Consensus 77 ~~~~aLeLL~~~f--~~~~VR~yAV~~L~~---~sd~eL~~yL~QLVQaLK 122 (166)
T cd00870 77 DIEDALELLSPYF--TNPVVRKYAVSRLKL---ASDEELLLYLLQLVQALK 122 (166)
T ss_pred CHHHHHHHcCccC--CCHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHH
Confidence 3444566666555 469999999999885 678899999999999875
No 307
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=56.49 E-value=32 Score=31.97 Aligned_cols=70 Identities=17% Similarity=0.109 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhcCcccccch--HhHHHHHhhhhcCCchhHHHHHHHHHHHHH
Q 005727 195 GRMAEILVQRAA-SPDEFTRLTAITWINEFVKLGGDQLVPYY--ADILGAILPCISDKEEKIRVVARETNEELR 265 (680)
Q Consensus 195 ~~II~iLl~~~~-s~d~~irl~Al~WL~e~~~l~~~~l~pfL--p~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll 265 (680)
-.++..|+.-+. +.|+.+...||.=|++|++..|.. ...+ -+.-..|+..|.+++++||..|..+.+.+|
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 345666666663 346677778999999999887653 2222 133468889999999999999999888665
No 308
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=56.48 E-value=3e+02 Score=30.03 Aligned_cols=222 Identities=19% Similarity=0.264 Sum_probs=122.9
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcC--CCCC----hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcc
Q 005727 157 LDGLFNMLSDSSHEIRQQADSALWEFLQEIKNS--PSVD----YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ 230 (680)
Q Consensus 157 L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~--~~~d----~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~ 230 (680)
+..|++.+.|-+=+-|+-+....+.+++-=... +.++ -+++++.|+..-.. -+++.+++=..+.|.+.-.
T Consensus 81 l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEcirhe--- 156 (342)
T KOG1566|consen 81 LSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECIRHE--- 156 (342)
T ss_pred hHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHHhhH---
Confidence 445556666666677766666666665422211 1122 26677777777332 4667776666666554321
Q ss_pred cccchHhHH------HHHhhhhcCCchhHHHHHHHHHHHHHHhccCC-CC--CCChHhHH-HHHHHhcCCCcHHHHHHHH
Q 005727 231 LVPYYADIL------GAILPCISDKEEKIRVVARETNEELRAIKADP-AD--GFDVGPIL-SIATRQLSSEWEATRIEAL 300 (680)
Q Consensus 231 l~pfLp~LL------p~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~-~~--~ldl~~iL-~vL~~~L~~~~~~tR~aaL 300 (680)
++.+++ ---..-++-+.-+|-.-|-.++.+++..-+.. ++ .-+++... ++-...+.+++..||..++
T Consensus 157 ---~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~ 233 (342)
T KOG1566|consen 157 ---FLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSL 233 (342)
T ss_pred ---HHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHH
Confidence 111111 11122333344455555555555443221100 00 11344443 3455667889999999999
Q ss_pred HHHHHHHhhChh--hHhhhhH--HHHHHHHHhcCCCCHHHHHHHHHHHHHHhhc--c-ch----H---HHHHHHHHHhhc
Q 005727 301 HWISTLLNRHRT--EVLHFLN--DIFDTLLKALSDPSDEVVLLVLEVHACIAKD--L-QH----F---RQLVVFLVHNFR 366 (680)
Q Consensus 301 ~WL~~L~~~~p~--~~~~~l~--~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~--~-~~----F---~~fm~~LL~lf~ 366 (680)
..+|.+.-.-++ .|..|.. +-+..++..|.|++..+--.|-.+..-...| + +- | ++=+..++.-|+
T Consensus 234 kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr~KLl~~l~~f~ 313 (342)
T KOG1566|consen 234 KLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNRPKLLELLHDFH 313 (342)
T ss_pred HhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCcHHHHHHHHHhC
Confidence 999999888765 4677766 7788889999999987776776655444421 1 11 1 112334455555
Q ss_pred ccc----hhHHhHHHHHHHHHHhh
Q 005727 367 VDN----SLLEKRGALIIRRLCVL 386 (680)
Q Consensus 367 ~d~----~lLe~rg~~IIrqLc~~ 386 (680)
+|+ ..+.++ +++|++.-.+
T Consensus 314 ~d~~~DeqF~dEk-~~~i~eI~~l 336 (342)
T KOG1566|consen 314 TDRTEDEQFLDEK-AYLIKEIRQL 336 (342)
T ss_pred CCCCchhhhhhhH-HHHHHHHHhc
Confidence 543 555555 6777766543
No 309
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=55.79 E-value=5.1e+02 Score=32.54 Aligned_cols=229 Identities=13% Similarity=0.117 Sum_probs=119.6
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHH---------------HHHHHHHHHHHH-hcC
Q 005727 165 SDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTR---------------LTAITWINEFVK-LGG 228 (680)
Q Consensus 165 sD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~ir---------------l~Al~WL~e~~~-l~~ 228 (680)
-|.+..||.++..+|..|...+...--.++-.+++.++.+-.+++++.. ..++..+..+.- +..
T Consensus 483 L~~~~qvr~l~~~~l~N~a~~C~t~~~~~lldi~EA~~~rs~s~~~~l~e~~~~~~~a~~~dI~~aVlgll~~~A~kl~~ 562 (1697)
T KOG3687|consen 483 LDKDHQVRKLATQLLVNLAEGCHTHHFNSLLDIIEAVMARSLSPPPELEERDVAAYSASLEDIKTAVLGLLVILATKLYT 562 (1697)
T ss_pred ccchhHHHHHHHHHHHHHHhhcchhcchhHHHHHHHHHhcccCCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 3466689999999999998877654344778899999988766653221 111112211111 000
Q ss_pred ccccc--chHhHHHHHhhh--hcCCchhHHHHHHHHHHHH------HHhccC--------------------------C-
Q 005727 229 DQLVP--YYADILGAILPC--ISDKEEKIRVVARETNEEL------RAIKAD--------------------------P- 271 (680)
Q Consensus 229 ~~l~p--fLp~LLp~LL~~--Lsds~~eIR~~A~~~n~~L------l~~v~~--------------------------~- 271 (680)
+| +--++--.++.. |.+..|.|++.+....-.. ++.-+. +
T Consensus 563 ---lP~~ha~~v~~~l~~h~~Lhy~~PKI~~~~s~ir~~~f~~l~llRa~~~Y~lg~Pcn~~~Vv~fspyLGId~pl~p~ 639 (1697)
T KOG3687|consen 563 ---LPASHATRVYEMLVSHIQLHYKHPKILPIASSIRLQAFDFLFLLRADSLYRLGLPCNKDGVVRFSPYLGIDGPLSPP 639 (1697)
T ss_pred ---CchHHHHHHHHHHHHhhhhhccCccccchhhHHHHHHHHHHHHHhhcccceecccCCCccEEEeeeeeeecCCCCCC
Confidence 11 111222233332 3356677776654332211 111100 0
Q ss_pred --CCCCChHhHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhc----------CCCCHHHHH
Q 005727 272 --ADGFDVGPILSIATRQLSS-EWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKAL----------SDPSDEVVL 338 (680)
Q Consensus 272 --~~~ldl~~iL~vL~~~L~~-~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~L----------sD~s~eV~~ 338 (680)
+..+.+.-+..++.+.+.+ ..|+++.-.+.-+-......-....+..+++-.+|.+.+ .|+.+.++.
T Consensus 640 ~~p~~i~~~~~~~~~~qCl~~~~D~~v~~Lv~~~lp~~l~~k~l~~~~~i~~l~~~Lcs~~~l~~~~e~fs~~~~h~~V~ 719 (1697)
T KOG3687|consen 640 TGPPVVPYSLLFRVLLQCLKQESDWKVLKLVLGRLPESLRYKVLIFTSSVDQLCSALCSMLRLRGAPEGFSRTDLHLAVV 719 (1697)
T ss_pred CCCCcccHHHHHHHHHHHhcccccHHHHHHHHHHhHHHHhHHHHhcCCcHHHHHHHHHHHHhccCCcccCCccccceeeh
Confidence 1123456667778888864 457777665554444433333334566777878888776 233344455
Q ss_pred HHHHHHHHHhh--ccchHHHHHHHHHHhhcccchhHHhHHHHHHHHH--HhhcChhhHHHHHHHhhcc
Q 005727 339 LVLEVHACIAK--DLQHFRQLVVFLVHNFRVDNSLLEKRGALIIRRL--CVLLDAERVYRELSTILEG 402 (680)
Q Consensus 339 ~al~lLa~Is~--~~~~F~~fm~~LL~lf~~d~~lLe~rg~~IIrqL--c~~L~~e~Iy~~La~iL~~ 402 (680)
-++..|--+.+ ..+..+.++..|-+.+.++ -++.-|+.| |.+.-++.+++.|.+.+-.
T Consensus 720 Pv~~~L~~yh~~lQ~~~~~~~I~~l~q~li~~------~aSVcv~~lsi~~Lemp~~~~~~LpD~v~Q 781 (1697)
T KOG3687|consen 720 PVLTALISYHNYLQKTKQREMIYCLEQGLIHR------CASVCVVALSICSLEMPDIIIKALPDLVVQ 781 (1697)
T ss_pred HHHHHHHHHHHhcCCcchhhHHHHHHHHHhhh------hHHHHHHHHHHHHHhhHHHHHHHhhHHHHH
Confidence 44444444442 2233444555554433222 223334433 4555668899999888643
No 310
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=55.43 E-value=7.5e+02 Score=34.34 Aligned_cols=196 Identities=15% Similarity=0.134 Sum_probs=122.0
Q ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHH-Hhhcc----chhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH-hhcc
Q 005727 34 VPPVLNSFSDQDSRVRYYACEALYNIA-KVVRG----DFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDI-VTES 107 (680)
Q Consensus 34 v~~VL~~l~D~d~rVR~~A~eaL~nI~-kv~~~----~il~~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkdi-v~es 107 (680)
.......+.+....+|..|+..+.+-. +..+. ....+++.+-.-+..+..+.+.+.+-|+..+..+..-+ .++.
T Consensus 7 ~~~~~~~l~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~f~~~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~ 86 (2341)
T KOG0891|consen 7 LKQYFSGLKSRNKSEQAQAARELFNYVTSELRELSAEESARFSNDLNHNIFELVHCLDSNERIGGILAIALLISFEGTEH 86 (2341)
T ss_pred HHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccchhhHHHHHHHHHhhhccc
Confidence 344556677777777777776666543 22332 12245566666666778888888887773333222212 4566
Q ss_pred ccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHH-HHHHHHh
Q 005727 108 DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSAL-WEFLQEI 186 (680)
Q Consensus 108 ~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L-~~fL~ei 186 (680)
+.+....+--.+.-.+...|..+-..+...++.+..-.+..-..+...=.+.++..+ -...++|..++..+ ..+....
T Consensus 87 ~~~~~s~~~n~l~~l~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~-~~~~~~~~~~a~~~~~~l~~~~ 165 (2341)
T KOG0891|consen 87 DRKNISRLANYLRYLLPSNDVEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWL-GERQEYRRLAAVLIIKELADNV 165 (2341)
T ss_pred ccchhHhHHHHHHHhhccCChHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHh-hhhhhhhhHHHHHhhhhHhhcC
Confidence 666666677777777777788888888888887766555555566666667777777 33345655443332 2222211
Q ss_pred hcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcc
Q 005727 187 KNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ 230 (680)
Q Consensus 187 ~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~ 230 (680)
+.-..+.+..+.+.+...+.++++.++..|+..++......++.
T Consensus 166 P~~~~~~~~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~~ 209 (2341)
T KOG0891|consen 166 PTFFYPYVNKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQR 209 (2341)
T ss_pred cHHHHHHHHHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhhc
Confidence 11012356888889999999999999999888887765544433
No 311
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=54.55 E-value=1.1e+02 Score=29.03 Aligned_cols=72 Identities=17% Similarity=0.156 Sum_probs=55.6
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhh--hHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHh
Q 005727 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF--LNDIFDTLLKALS-DPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 277 l~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~--l~~l~p~LL~~Ls-D~s~eV~~~al~lLa~Is 348 (680)
-...+..|.+.+.+.+..+...||..|-.+...|+..+... ..+++..|.+.++ ..++.|+.+++.++..-+
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999999999998876532 2345566666666 457788888887655444
No 312
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=54.43 E-value=3.5e+02 Score=30.20 Aligned_cols=54 Identities=15% Similarity=0.359 Sum_probs=35.1
Q ss_pred HHHHHHHHHHh----cCcccccchHhHHHHHhhhhc--CCchhHHHHHHHHHHHHHHhcc
Q 005727 216 AITWINEFVKL----GGDQLVPYYADILGAILPCIS--DKEEKIRVVARETNEELRAIKA 269 (680)
Q Consensus 216 Al~WL~e~~~l----~~~~l~pfLp~LLp~LL~~Ls--ds~~eIR~~A~~~n~~Ll~~v~ 269 (680)
++.+|.++++- ......-.+.-++|.+++|+- ++++.+|..|.+....+++...
T Consensus 231 vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~ 290 (373)
T PF14911_consen 231 VLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQ 290 (373)
T ss_pred HHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHccc
Confidence 34455555444 233345567788889999765 5578899998887776655543
No 313
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=53.34 E-value=4.1e+02 Score=30.72 Aligned_cols=320 Identities=16% Similarity=0.137 Sum_probs=155.4
Q ss_pred HHhhccCCC--CHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhcc-----
Q 005727 36 PVLNSFSDQ--DSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES----- 107 (680)
Q Consensus 36 ~VL~~l~D~--d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es----- 107 (680)
.+++|++.. -+-+|--|.+.+..++.-. |....++-++..++++.+.|++++++.-+ .+++++....+.+.
T Consensus 257 ~~~~~~~~~~~ps~~rle~~qvl~~~a~~~-~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~ 335 (728)
T KOG4535|consen 257 DAGSAAGSTYEPSPMRLEALQVLTLLARYF-SMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDST 335 (728)
T ss_pred hHHhhhcCccCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcc
Confidence 345555422 2346777666665555322 23346889999999999999999999887 88888877766431
Q ss_pred ------c--------------ccc-------------Hh---------------hhHHHHHHHhc-CCCHHHHHHHHHHH
Q 005727 108 ------D--------------QFS-------------IE---------------EFIPLLRERMN-VLNPYVRQFLVGWI 138 (680)
Q Consensus 108 ------~--------------~f~-------------L~---------------~fIP~L~e~i~-~~np~vR~~avswI 138 (680)
+ .++ +. ...|.+...-. ++|.-+|..|+..+
T Consensus 336 k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~ 415 (728)
T KOG4535|consen 336 KAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRAL 415 (728)
T ss_pred cchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhc
Confidence 0 000 00 01111111111 12233455555555
Q ss_pred HHhhcCCchh-hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhh-cCCCCC------hHHHHHHHHHhcC--C-
Q 005727 139 TVLDSVPDID-MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIK-NSPSVD------YGRMAEILVQRAA--S- 207 (680)
Q Consensus 139 ~~L~sip~~~-Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~-~~~~~d------~~~II~iLl~~~~--s- 207 (680)
.++.-.|+.. -..+.-+-..+....+.|..-.+|..+.=.++.+-..+. +.|.++ .+..+..++.... +
T Consensus 416 ~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~A 495 (728)
T KOG4535|consen 416 GVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASA 495 (728)
T ss_pred eeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5444444321 112333344444555555555555444444444433322 223332 1122222222111 1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCC-----chhHHHHHHHHHHHHHHhccCCCC---CCCh-H
Q 005727 208 PDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDK-----EEKIRVVARETNEELRAIKADPAD---GFDV-G 278 (680)
Q Consensus 208 ~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds-----~~eIR~~A~~~n~~Ll~~v~~~~~---~ldl-~ 278 (680)
.++.|+..|.+.++...++-....-+-+..++.+-...+.+. ...+|--|+-+.+.+. ++.+- ..+. +
T Consensus 496 d~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLf---kn~a~~lq~~~wA~ 572 (728)
T KOG4535|consen 496 DKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLF---KNPALPLQTAPWAS 572 (728)
T ss_pred hhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhh---cCccccccCCCchH
Confidence 124466666666666554422111122333333333333332 2345555666666443 32221 1222 5
Q ss_pred hHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh---hccchH
Q 005727 279 PILSIATRQLS-SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA---KDLQHF 354 (680)
Q Consensus 279 ~iL~vL~~~L~-~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is---~~~~~F 354 (680)
.+.++|+..+. ..|..+|+.|-..|..- +.+++...+++-....++..| +++.....+-.|. +-...|
T Consensus 573 ~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp--~~re~~~d~~~Lsw~~lv~aL------i~s~~~v~f~eY~~~Dsl~~q~ 644 (728)
T KOG4535|consen 573 QAFNALTSLVTSCKNFKVRIRAAAALSVP--GKREQYGDQYALSWNALVTAL------QKSEDTIDFLEYKYCDSLRTQI 644 (728)
T ss_pred HHHHHHHHHHHHhccceEeehhhhhhcCC--CCcccchhHHhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777764 45566777766655433 345555555554444444332 3444444444443 234567
Q ss_pred HHHHHHHHHhhcc
Q 005727 355 RQLVVFLVHNFRV 367 (680)
Q Consensus 355 ~~fm~~LL~lf~~ 367 (680)
...+.+++...+.
T Consensus 645 c~av~hll~la~S 657 (728)
T KOG4535|consen 645 CQALIHLLSLASS 657 (728)
T ss_pred HHHHHHHHHHhhc
Confidence 7777777776654
No 314
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=52.29 E-value=1.8e+02 Score=37.37 Aligned_cols=297 Identities=13% Similarity=0.089 Sum_probs=0.0
Q ss_pred hhhhhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 005727 24 FYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDI 103 (680)
Q Consensus 24 ~~~~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkdi 103 (680)
....+|++..+.-++..+.-....||.++++.... +++.-++-..-.+.|..+.+|+.|.. +++-.
T Consensus 964 s~~~k~~~~~V~~l~~~~esg~esvr~~~all~e~-----------~~~ffIal~~~~~nDd~~~~r~ma~~---~i~~~ 1029 (1364)
T KOG1823|consen 964 SKLEKQMEFMVDNLLYEVESGRESVRFSPALLFEI-----------LSNFFIALVLVKINDDEPVCREMASM---LIKVL 1029 (1364)
T ss_pred chhhHHHHHHHHHhhhhhhcccchhcccHHHHHHH-----------hhccchhhcccccccchHHHHHHHHH---HHHHH
Q ss_pred hhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHh-cCCCChhHH-----HHHHH
Q 005727 104 VTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNM-LSDSSHEIR-----QQADS 177 (680)
Q Consensus 104 v~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~l-LsD~~~dVR-----~~a~~ 177 (680)
..+.+.-..+-.-..+.++.....-.-|.-+++|.+......+.+...-+..+++.+-+- +.+...+.- +..+.
T Consensus 1030 ~~~~d~e~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~e~~~~~~~~~~~lek~~~~~~s~~~~~~~~~~~~~~ 1109 (1364)
T KOG1823|consen 1030 YDKEDNELFNLLERLLHEWVGVHKRHKRFILVGATGKAEESIGFELTIQLFVLLSVLEKEIIVEVSDPIEAETEEVLFDK 1109 (1364)
T ss_pred hCHhhhHHHhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHhhccceeeeecccccccHHHHHHHHHhhHH
Q ss_pred HHHHHHHHhhcCCCC-ChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCch---hH
Q 005727 178 ALWEFLQEIKNSPSV-DYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEE---KI 253 (680)
Q Consensus 178 ~L~~fL~ei~~~~~~-d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~---eI 253 (680)
.+...+.++...+.. ++.+|..-+......+..-++.++..-.+-+...++.....-. .++|.++..+.+.+. +.
T Consensus 1110 ~lfs~lt~~t~~ikk~~f~ki~~~v~~~~l~~~~~v~~s~~~lf~~l~a~~~~~e~~~~-~i~~~ll~~L~~~~i~~~~~ 1188 (1364)
T KOG1823|consen 1110 VLFSWLTLVTENIKKGGFSKIWSRVVGLLLMPHSWVRLSRAQLFGFLFAISDVSELRLR-TIIPLLLAHLDYPEIIKNDS 1188 (1364)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhcccHHHHHHH-HhHHHHHHhCCCcccchhhH
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCh---HhHHHHHHHhcCCCcHHHHHHH-------------HHHHHH-----HHhhChh
Q 005727 254 RVVARETNEELRAIKADPADGFDV---GPILSIATRQLSSEWEATRIEA-------------LHWIST-----LLNRHRT 312 (680)
Q Consensus 254 R~~A~~~n~~Ll~~v~~~~~~ldl---~~iL~vL~~~L~~~~~~tR~aa-------------L~WL~~-----L~~~~p~ 312 (680)
-.++.+..+..+..+-......++ +.+...+.+.+.......-.++ +-|+.. .+...|+
T Consensus 1189 ~am~~~l~~~~~~~~l~~qv~~~li~~~~l~~~~~~~~~~~~~~~~~~c~~e~~~~~~~~~~~p~~~~~i~~~~~~~d~E 1268 (1364)
T KOG1823|consen 1189 LAMYRQLRSSKFDLVLGAQVAKNLIFGPALLWNLRENLEALISEICPACRCECMEKKACSQLLPLFALVIDEDCGQVDDE 1268 (1364)
T ss_pred HHHHHHHccCcHHHHHHHHHhhheeecHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhhcchhhhccchhhcccCcc
Q ss_pred hHhhhhHHHHHHHHHhcCCCCHH
Q 005727 313 EVLHFLNDIFDTLLKALSDPSDE 335 (680)
Q Consensus 313 ~~~~~l~~l~p~LL~~LsD~s~e 335 (680)
....-.+.+++.+..-|.+++++
T Consensus 1269 ~~~~~~~~yl~ll~~eLk~~e~q 1291 (1364)
T KOG1823|consen 1269 VNEEVEKAYLELLTEELKLEEAQ 1291 (1364)
T ss_pred hhhhhHHHHHHHHHHHHHhhhHH
No 315
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=51.70 E-value=36 Score=34.04 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=50.9
Q ss_pred hHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccc
Q 005727 153 LPDFLDGLFNMLSDSSHE-IRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL 231 (680)
Q Consensus 153 Lp~~L~~Lf~lLsD~~~d-VR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l 231 (680)
.|+-++.+++...=.+++ |+++ .+. +..- +.++....++.|-.... |+.||..|+.|+. +.+.+.+
T Consensus 42 ~p~aL~~~L~sv~W~~~~e~~e~-~~l----l~~W---~~~~~~~aL~LL~~~~~--~~~Vr~yAV~~L~---~~~d~~l 108 (184)
T smart00145 42 NPKALPKFLLSVNWSDADEVAQA-LSL----LKKW---APLDPEDALELLSPKFP--DPFVRAYAVERLE---SASDEEL 108 (184)
T ss_pred ChHHHHHHHhcCCCCCHHHHHHH-HHH----HHcC---CCCCHHHHHHHhCccCC--CHHHHHHHHHHHH---hCCHHHH
Confidence 344555555445445555 4433 222 2222 35677777877776655 7899999999996 4677788
Q ss_pred ccchHhHHHHH
Q 005727 232 VPYYADILGAI 242 (680)
Q Consensus 232 ~pfLp~LLp~L 242 (680)
.-|+|+++.++
T Consensus 109 ~~yLpQLVQaL 119 (184)
T smart00145 109 LLYLLQLVQAL 119 (184)
T ss_pred HHHHHHHHHHH
Confidence 99999998876
No 316
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=51.66 E-value=29 Score=30.63 Aligned_cols=54 Identities=24% Similarity=0.284 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 005727 130 VRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (680)
Q Consensus 130 vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ 184 (680)
.|-.+|--+.-+...-+-++=+++|+++..|.+..+| ...|++.+.++|.+|-+
T Consensus 5 ~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkr 58 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKR 58 (90)
T ss_dssp HHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHH
Confidence 3555666666666666666777999999999999998 56789988899999976
No 317
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=51.52 E-value=1.2e+02 Score=28.67 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=53.7
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhh--hHHHHHHHHHhcCCCC-HH---HHHHHHHHHHHHh
Q 005727 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF--LNDIFDTLLKALSDPS-DE---VVLLVLEVHACIA 348 (680)
Q Consensus 277 l~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~--l~~l~p~LL~~LsD~s-~e---V~~~al~lLa~Is 348 (680)
-...+..|.+.+.+.+..+..-||..+-.+...|+..+... -.+++..|.+.++++. +. |+.+++.++..-+
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999877543 2345556666555443 22 8888887665544
No 318
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=51.14 E-value=38 Score=33.52 Aligned_cols=78 Identities=22% Similarity=0.275 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccccc
Q 005727 154 PDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVP 233 (680)
Q Consensus 154 p~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~p 233 (680)
|..++.+++...-.+++-...+.+. ++.- +.++...-++.|-.... |+.||..|+.|++ ..+++++..
T Consensus 38 p~aL~~~l~sv~w~~~~~v~e~~~l----L~~W---~~i~~~~aLeLL~~~f~--d~~VR~yAV~~L~---~~sd~eL~~ 105 (171)
T cd00872 38 PQALPKLLLSVKWNKRDDVAQMYQL----LKRW---PKLKPEQALELLDCNFP--DEHVREFAVRCLE---KLSDDELLQ 105 (171)
T ss_pred cHHHHHHHhhCCCCCHHHHHHHHHH----HHCC---CCCCHHHHHHHCCCcCC--CHHHHHHHHHHHH---hCCHHHHHH
Confidence 5555555555655555433333333 3322 34566666666665444 6899999999997 477888999
Q ss_pred chHhHHHHHh
Q 005727 234 YYADILGAIL 243 (680)
Q Consensus 234 fLp~LLp~LL 243 (680)
|+|+++.++-
T Consensus 106 yL~QLVQaLK 115 (171)
T cd00872 106 YLLQLVQVLK 115 (171)
T ss_pred HHHHHHHHHH
Confidence 9999877643
No 319
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=51.00 E-value=17 Score=35.99 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=29.6
Q ss_pred cCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHH
Q 005727 124 NVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF 161 (680)
Q Consensus 124 ~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf 161 (680)
+..+|.||++|+.|+.. .++.++.-|+|.+++.|-
T Consensus 81 y~~~~~Vr~yAvr~L~~---~~~e~l~~YlpQLVQaLr 115 (175)
T cd00871 81 YPGHPLVLQYAVRVLES---YPVETVFFYIPQIVQALR 115 (175)
T ss_pred cCCCHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHh
Confidence 34689999999999874 778899999999998765
No 320
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=50.94 E-value=4.1e+02 Score=31.93 Aligned_cols=86 Identities=15% Similarity=0.133 Sum_probs=46.2
Q ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhccccc-cHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhc
Q 005727 74 IFDALCKLSADSDANVQSAAHLLDRLVKDIVTESDQF-SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGF 152 (680)
Q Consensus 74 Ifd~L~kL~aD~d~~Vr~gA~~Ldrllkdiv~es~~f-~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~ 152 (680)
.+..|=|.+-..++.+|.||- |. -.|+ .++-+ .-+..+-+|...+...+..+|..++--++.--+-..
T Consensus 416 gL~qldkylys~~~~ikaGaL-Lg---igi~-~~gv~ne~dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq------ 484 (878)
T KOG2005|consen 416 GLEQLDKYLYSDESYIKAGAL-LG---IGIS-NSGVFNECDPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQ------ 484 (878)
T ss_pred hHHHHHHHhhcCCchhhhccc-ee---eeee-ccccccccCHHHHHHHHhccCCCceeehHHhhhhHHhhcCCc------
Confidence 444444555455556676661 10 0111 11111 123357788888888888999888777764332222
Q ss_pred hHHHHHHHHHhcCCCChh
Q 005727 153 LPDFLDGLFNMLSDSSHE 170 (680)
Q Consensus 153 Lp~~L~~Lf~lLsD~~~d 170 (680)
=.+++.-|..+++|.+..
T Consensus 485 ~e~V~~lL~Pi~~d~~~~ 502 (878)
T KOG2005|consen 485 REEVLELLSPIMFDTKSP 502 (878)
T ss_pred hHHHHHHHhHHhcCCCCc
Confidence 123343556677776655
No 321
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=50.82 E-value=3.3e+02 Score=28.81 Aligned_cols=177 Identities=17% Similarity=0.170 Sum_probs=109.7
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhh--------hhchHHHHHHHHHhcCCCC-----hhHHHHHHHH
Q 005727 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM--------LGFLPDFLDGLFNMLSDSS-----HEIRQQADSA 178 (680)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~L--------i~~Lp~~L~~Lf~lLsD~~-----~dVR~~a~~~ 178 (680)
-+.+-|.+...+.+.+. -...+..+..+...++..+ ...+=..+|.+..-+.+++ +++++.| +.
T Consensus 62 f~Glq~Ll~KGL~Ss~t--~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A-~~ 138 (262)
T PF14225_consen 62 FEGLQPLLLKGLRSSST--YELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIA-EA 138 (262)
T ss_pred chhHHHHHhCccCCCCc--HHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHH-HH
Confidence 45678888888876554 3445566666666555433 3334455566666666666 5666665 55
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccc-cchHhHHHHHhhhhcCCchhHHHHH
Q 005727 179 LWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLV-PYYADILGAILPCISDKEEKIRVVA 257 (680)
Q Consensus 179 L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~-pfLp~LLp~LL~~Lsds~~eIR~~A 257 (680)
|....+ .....++..++.-...+.. .+ .-.|++.++..-.+.+. .|-.+++..++..+...-+.+|...
T Consensus 139 La~~a~---~~~~~~La~il~~ya~~~f-r~------~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~ 208 (262)
T PF14225_consen 139 LAQVAE---AQGLPNLARILSSYAKGRF-RD------KDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKT 208 (262)
T ss_pred HHHHHH---hCCCccHHHHHHHHHhcCC-CC------HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHH
Confidence 665653 3234567776666555443 22 22466666555445554 3557788888888888888898888
Q ss_pred HHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHH
Q 005727 258 RETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWI 303 (680)
Q Consensus 258 ~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL 303 (680)
.+....+++.+.-... .-++++..|.+.+.++.|..-..+++-.
T Consensus 209 L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~~~~eAL~VLd~~ 252 (262)
T PF14225_consen 209 LQILKVLLPHVDMRSP--HGADLISPLLRLLQTDLWMEALEVLDEI 252 (262)
T ss_pred HHHHHHHhccccCCCC--cchHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 7777776666542211 3457899999999998886544444433
No 322
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=50.58 E-value=1.5e+02 Score=35.59 Aligned_cols=181 Identities=17% Similarity=0.139 Sum_probs=88.5
Q ss_pred CCCHHHHHHHHHHHHHhhc--CC---c----hhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChH
Q 005727 125 VLNPYVRQFLVGWITVLDS--VP---D----IDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYG 195 (680)
Q Consensus 125 ~~np~vR~~avswI~~L~s--ip---~----~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~ 195 (680)
.++...|+.+++++..+-- .| + .+--.|+..+.+-+..-.++.+.++|=.+.+.+. +.+.+.+.-+-+
T Consensus 207 ~e~s~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~a---ki~srl~w~l~~ 283 (993)
T COG5234 207 QENSALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLA---KIISRLPWNLAE 283 (993)
T ss_pred ccHHHHHHHHHHHhhhcCceecccccCcccCcchhHHHHHHHHHHHcCcccccHHHHHHHHhhHH---HHHhhcccccHH
Confidence 4556889998888886521 11 1 2244567777777777777788889976655544 444444443433
Q ss_pred H---HHHHHHHhcC-----CCCHHHHHHHHHHHHHHHH--hcCcccccchHh-HHHHHhhhhcCCch--------hHHHH
Q 005727 196 R---MAEILVQRAA-----SPDEFTRLTAITWINEFVK--LGGDQLVPYYAD-ILGAILPCISDKEE--------KIRVV 256 (680)
Q Consensus 196 ~---II~iLl~~~~-----s~d~~irl~Al~WL~e~~~--l~~~~l~pfLp~-LLp~LL~~Lsds~~--------eIR~~ 256 (680)
. +++++.+++- .+-.-+-..-+.|++.+.. +++.....|-.. +.|.+.+.+.++.. .||+.
T Consensus 284 sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~ala~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRds 363 (993)
T COG5234 284 SFIDIIELMTENMFLSPLENTCDIIITNELVWHGAILFFALAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDS 363 (993)
T ss_pred HHHHHHHhcccccchhhhhCccceeecchHHHHHHHHHHHHhhccccchhhhhhhhheccccceeehheeeeccceeecc
Confidence 3 4444444421 1100011111356665433 233333334332 66777788888642 45554
Q ss_pred HHHHHHHHHHhccCCCCCCChHh-HHHHHHH-hcCCCcHHHHHHHHHHHHHHHhh
Q 005727 257 ARETNEELRAIKADPADGFDVGP-ILSIATR-QLSSEWEATRIEALHWISTLLNR 309 (680)
Q Consensus 257 A~~~n~~Ll~~v~~~~~~ldl~~-iL~vL~~-~L~~~~~~tR~aaL~WL~~L~~~ 309 (680)
+.=..-.+.+.-.++.. -.+.. +...|.+ .|.|++--.|.+|.-.+..+..+
T Consensus 364 s~f~vWs~~r~~S~s~~-~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~iGR 417 (993)
T COG5234 364 SCFFVWSFYRCYSKSAI-EGLQTNLIHLLLQTALFDPELNVRRAATAALFEVIGR 417 (993)
T ss_pred cceeeeeeeeccccccc-hhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHhcc
Confidence 32111111111000000 00222 2333333 56777777777777666544433
No 323
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=50.33 E-value=1.6e+02 Score=33.83 Aligned_cols=110 Identities=7% Similarity=0.205 Sum_probs=68.6
Q ss_pred CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhc-CCchhHHHHHHHHHHHHHHhcc
Q 005727 191 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS-DKEEKIRVVARETNEELRAIKA 269 (680)
Q Consensus 191 ~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Ls-ds~~eIR~~A~~~n~~Ll~~v~ 269 (680)
+++.+.|++.|+.-+...+++.+...++|+.+ .++++.++..|+ ..+.++...|.+....+.....
T Consensus 29 HI~~~~ImDlLLklIs~d~~~~~~~ilewL~~-------------q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 29 HIDTPAIMDLLLKLISTDKPESPTGILEWLAE-------------QNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred hcCCcHHHHHHHHHHccCcccchHHHHHHHHH-------------hCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 56778889998888887667788889999974 345666666665 3356677777777666665544
Q ss_pred CCCCC-------------CChHhHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhChhh
Q 005727 270 DPADG-------------FDVGPILSIATRQLSS-EWEATRIEALHWISTLLNRHRTE 313 (680)
Q Consensus 270 ~~~~~-------------ldl~~iL~vL~~~L~~-~~~~tR~aaL~WL~~L~~~~p~~ 313 (680)
+.... +-=++++..|...+.+ .....-..++..++.+.++...+
T Consensus 96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRknnsd 153 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKNNSD 153 (475)
T ss_pred ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcccc
Confidence 32111 1114555555554442 33345566677777777766443
No 324
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=50.11 E-value=39 Score=30.33 Aligned_cols=58 Identities=9% Similarity=0.064 Sum_probs=50.1
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcc-cccchHhHHHHHhhhhcCC
Q 005727 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ-LVPYYADILGAILPCISDK 249 (680)
Q Consensus 192 ~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~-l~pfLp~LLp~LL~~Lsds 249 (680)
++++.++-++...+.+-.++||..++..++-+++..|+. +..+..++++..+..++..
T Consensus 7 p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 7 PFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 456677778888888889999999999999999999988 6778999999999999866
No 325
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=50.08 E-value=13 Score=37.03 Aligned_cols=78 Identities=26% Similarity=0.359 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhhcCCChh-HHHHHHHHHHHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhh
Q 005727 71 FNQIFDALCKLSADSDAN-VQSAAHLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM 149 (680)
Q Consensus 71 f~eIfd~L~kL~aD~d~~-Vr~gA~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~L 149 (680)
.++.++.+...+.-.++. |+++-..|.. =...+...-+.+|...+. ++.||++||+++. +.++.++
T Consensus 43 ~p~aL~~~L~sv~w~~~~~~~~~~~ll~~--------W~~~~p~~AL~LL~~~f~--~~~VR~yAv~~L~---~~~d~~l 109 (184)
T PF00613_consen 43 NPEALPKLLRSVDWWNPEEVSEAYQLLLQ--------WPPISPEDALELLSPNFP--DPFVRQYAVRRLE---SLSDEEL 109 (184)
T ss_dssp SGGGHHHHHTTSTTTSHHHHHHHHHHHHT--------SHCTTHHHHHHCTSTT-----HHHHHHHHHHHC---TS-HHHH
T ss_pred CchHHHHHHhhCCCCchhhHHHHHHHHHc--------CCCCCHHHHHHHHHhhcc--HHHHHHHHHHHHH---HcCchHH
Confidence 345566666655555543 4433233222 111233334555544443 4999999999985 5778899
Q ss_pred hhchHHHHHHHH
Q 005727 150 LGFLPDFLDGLF 161 (680)
Q Consensus 150 i~~Lp~~L~~Lf 161 (680)
..|+|.+.+.|-
T Consensus 110 ~~yLpQLVQaLr 121 (184)
T PF00613_consen 110 LFYLPQLVQALR 121 (184)
T ss_dssp HHHHHHHHHHGG
T ss_pred HHHHHHHHHHhe
Confidence 999999998774
No 326
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=49.65 E-value=12 Score=36.57 Aligned_cols=92 Identities=21% Similarity=0.240 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcC--CchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCC
Q 005727 213 RLTAITWINEFVKLGGDQLVPYYADILGAILPCISD--KEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSS 290 (680)
Q Consensus 213 rl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsd--s~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~ 290 (680)
|...+.|+.+|+..+|.. .+-+++..+...-.. .+.++...+.+|...++..-..-...++.+..++.+...+.+
T Consensus 93 rt~~~~Wv~~Fl~~~G~~---~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s 169 (187)
T PF06371_consen 93 RTNPISWVQEFLELGGLE---ALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDS 169 (187)
T ss_dssp HHS-HHHHHHH-HHHHHH---HHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--T
T ss_pred ccCCchHHHHhccCCCHH---HHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCC
Confidence 344578999999988733 222333333332222 233444444444433221100000012346788999999999
Q ss_pred CcHHHHHHHHHHHHHHH
Q 005727 291 EWEATRIEALHWISTLL 307 (680)
Q Consensus 291 ~~~~tR~aaL~WL~~L~ 307 (680)
++..+|..+++-|..+.
T Consensus 170 ~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 170 PNIKTRKLALEILAALC 186 (187)
T ss_dssp TSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999887763
No 327
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=49.22 E-value=2.3e+02 Score=31.71 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=59.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhch--HHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHHhhcCCC
Q 005727 115 FIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFL--PDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNSPS 191 (680)
Q Consensus 115 fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~L--p~~L~~Lf~lLsD-~~~dVR~~a~~~L~~fL~ei~~~~~ 191 (680)
.|..|..|++..||.|-..+++.+..+..-++.-+-.-+ -+|-..|.++++| ..+.|++....++.+...++++.+.
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp~ 125 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDPS 125 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCcc
Confidence 477788999999999999999999988777765443222 2566667777774 5788888777788888888877665
Q ss_pred CC
Q 005727 192 VD 193 (680)
Q Consensus 192 ~d 193 (680)
..
T Consensus 126 ls 127 (462)
T KOG2199|consen 126 LS 127 (462)
T ss_pred hh
Confidence 43
No 328
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=49.01 E-value=7.7e+02 Score=32.59 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=73.7
Q ss_pred CcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 005727 228 GDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLL 307 (680)
Q Consensus 228 ~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~ 307 (680)
+..+..|+|.++...-.+|...++.++..+......+...... ..=.++++.|..+..+.+...--+||..|..++
T Consensus 426 ~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds----~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~ 501 (1426)
T PF14631_consen 426 SEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDS----YCQQEVVGALVTHIGSGNSQEVDAALDVLCELA 501 (1426)
T ss_dssp HHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-H----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 3456778888888888888877888877766655544443311 001578888888876666655668899999999
Q ss_pred hhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005727 308 NRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 308 ~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is 348 (680)
...|+.+.+|... +-.+|..+.+=+..=+.+...+++.++
T Consensus 502 ~~~~~~l~~fa~~-l~giLD~l~~Ls~~qiR~lf~il~~La 541 (1426)
T PF14631_consen 502 EKNPSELQPFATF-LKGILDYLDNLSLQQIRKLFDILCTLA 541 (1426)
T ss_dssp HH-HHHHHHTHHH-HHGGGGGGGG--HHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 9898888887443 333445555545444555666666665
No 329
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=48.51 E-value=20 Score=24.28 Aligned_cols=28 Identities=32% Similarity=0.216 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcC
Q 005727 47 RVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSAD 84 (680)
Q Consensus 47 rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD 84 (680)
.||+.|+++|.++.. ++..+.|.+.+.|
T Consensus 2 ~vR~~aa~aLg~~~~----------~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGD----------EEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCC----------HhHHHHHHHHhcC
Confidence 589999999988721 3455666666555
No 330
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=48.03 E-value=67 Score=28.59 Aligned_cols=75 Identities=20% Similarity=0.297 Sum_probs=54.6
Q ss_pred hhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHh---hccchhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 005727 27 ETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKV---VRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVK 101 (680)
Q Consensus 27 ~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv---~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllk 101 (680)
..+...++..++.+.-|.+...|.+++..+..+.+. .+..+...|.++++.+-.+.-|......+-|..+++++.
T Consensus 31 ~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~~~~gf~~~l~~l~Dl~~D~P~~~~~la~~~~~~i~ 108 (113)
T PF02847_consen 31 PSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQFQEGFEDLLESLEDLELDIPKAPEYLAKFLARLIA 108 (113)
T ss_dssp GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhHhhhccccchHHHHHHHHHHHHHHH
Confidence 468888999999999999999999998887776532 122445667788888877777755556666666666644
No 331
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=47.82 E-value=1.5e+02 Score=27.78 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=55.8
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhh--hHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHh
Q 005727 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF--LNDIFDTLLKALSDPS--DEVVLLVLEVHACIA 348 (680)
Q Consensus 277 l~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~--l~~l~p~LL~~LsD~s--~eV~~~al~lLa~Is 348 (680)
-...+..|.+.+.+.+..+...||..+-.+...|+..+... ..++...|.+.++++. +.|+.+.+.++..-+
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 35788899999999999999999999999999999877433 2346667777777753 448888887665544
No 332
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=47.66 E-value=45 Score=29.91 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=45.8
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchh-hhhchHHHHHHHHHhcCCC
Q 005727 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID-MLGFLPDFLDGLFNMLSDS 167 (680)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~-Li~~Lp~~L~~Lf~lLsD~ 167 (680)
.+.++.-+...|.+.+|.||.-++..+..+....|.. +..+...++++.+.+++-.
T Consensus 9 ~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 9 FPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGWS 65 (102)
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCCC
Confidence 3456777777888999999999999999988877766 6677888888888888765
No 333
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=47.51 E-value=55 Score=31.61 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccc
Q 005727 155 DFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPY 234 (680)
Q Consensus 155 ~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pf 234 (680)
..++.+++.+.-.+++-...+.. ++. .=+.++....++.|-.... ++.||..|++++.. .+.+++.-|
T Consensus 39 ~~lp~~L~sv~w~~~~~~~e~~~----lL~---~W~~~~~~~aL~LL~~~~~--~~~vr~yAv~~L~~---~~~~~l~~y 106 (152)
T cd00864 39 KALPKLLKSVNWNDDEEVSELYQ----LLK---WWAPLSPEDALELLSPKYP--DPVVRQYAVRVLES---ASDDELLLY 106 (152)
T ss_pred HHHHHHHHHccCCCHHHHHHHHH----HHh---cCCCCCHHHHHHHcCCcCC--CHHHHHHHHHHHHh---CCHHHHHHH
Confidence 33333444444455554444332 222 2134566667777665544 59999999999974 677788999
Q ss_pred hHhHHHHH
Q 005727 235 YADILGAI 242 (680)
Q Consensus 235 Lp~LLp~L 242 (680)
+|+++.++
T Consensus 107 lpQLVQaL 114 (152)
T cd00864 107 LPQLVQAL 114 (152)
T ss_pred HHHHHHHH
Confidence 99988776
No 334
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.29 E-value=4.4e+02 Score=29.23 Aligned_cols=237 Identities=20% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHhhhhcCCchhHHHHHHHHHHHHHHhccC----------CCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Q 005727 240 GAILPCISDKEEKIRVVARETNEELRAIKAD----------PADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNR 309 (680)
Q Consensus 240 p~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~----------~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~ 309 (680)
|.+.....+-.+.+++...++-..+-++..+ .+..-+++.++-.+.. -.+.+...-..+|..+..+-.+
T Consensus 59 p~i~~~~~~i~e~i~~~~~E~s~ll~~l~d~ck~~~A~r~la~~~ga~~~~it~~~l-a~~~~~~~l~ksL~al~~lt~~ 137 (461)
T KOG4199|consen 59 PVINETVDKIKEHIGQKLEETTELLEQLADECKKSLAHRVLAGKNGAHDALITLLEL-AESPNESVLKKSLEAINSLTHK 137 (461)
T ss_pred ccHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHhccCCCcchhhhHHHH-hhCCchhHHHHHHHHHHHhhcC
Q ss_pred ChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh----hccchHHH--HHHHHHHhhcccchhHHhHHHHHHHHH
Q 005727 310 HRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA----KDLQHFRQ--LVVFLVHNFRVDNSLLEKRGALIIRRL 383 (680)
Q Consensus 310 ~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is----~~~~~F~~--fm~~LL~lf~~d~~lLe~rg~~IIrqL 383 (680)
.|+-+-.--..++-.+| .++-++.+|....++.+..-+ -+.+.|-+ +++-+++.+....+ +| .+|-|
T Consensus 138 qpdl~da~g~~vvv~lL-~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk---~~---~VRel 210 (461)
T KOG4199|consen 138 QPDLFDAEAMAVVLKLL-ALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGK---TR---TVREL 210 (461)
T ss_pred CcchhccccHHHHHHHH-hcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCc---cH---HHHHH
Q ss_pred HhhcCh-----------------------hhHHHHHHHhhcccCChhHHHHHHHHHHHHHhchHHHHHHHHHHhhcc-CC
Q 005727 384 CVLLDA-----------------------ERVYRELSTILEGEADLDFACTMVQALNLILLTSSELSELRDLLKKSL-VN 439 (680)
Q Consensus 384 c~~L~~-----------------------e~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTa~EL~~lR~~L~~~l-~~ 439 (680)
|.-+-. |.|...|.+-+.-.-|.........+|..+- .|+.+.... +.
T Consensus 211 ~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lA--------Vr~E~C~~I~e~ 282 (461)
T KOG4199|consen 211 YDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALA--------VRDEICKSIAES 282 (461)
T ss_pred HHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHH--------HHHHHHHHHHHc
Q ss_pred cchHHHHHHHHHHhccChhHHHHHHHHhhhhHHHHHHHHHHhhcCcchhhHHh---HHHHHHhhc
Q 005727 440 PAGKDLFVSLYASWCHSPMAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQ---LDKLIRLLE 501 (680)
Q Consensus 440 ~~~~~lF~~L~~~w~~n~v~~~slcll~~~Y~~a~~ll~~~~~~~~~~~~l~q---id~LVqLlE 501 (680)
..--.+|.++=.|=-|--. ..-..+..+++.++.-+..-+..|| .|++|+|.+
T Consensus 283 GGl~tl~~~i~d~n~~~~r---------~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~ 338 (461)
T KOG4199|consen 283 GGLDTLLRCIDDSNEQGNR---------TLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLAL 338 (461)
T ss_pred cCHHHHHHHHhhhchhhHH---------HHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHH
No 335
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=46.45 E-value=5.6e+02 Score=30.22 Aligned_cols=66 Identities=17% Similarity=0.287 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHhhccc
Q 005727 299 ALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQHFRQLVVFLVHNFRVD 368 (680)
Q Consensus 299 aL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~-~~~~F~~fm~~LL~lf~~d 368 (680)
-|+.+.++++..|+.+.||+|.+.+.|. ..+|+-+...-.+...|+. ..+-+.++++.|.....++
T Consensus 182 LLrvlS~Vye~~P~~i~PhlP~l~~lL~----q~~p~~~~ll~~l~~LI~Qk~~evL~~ciP~L~g~l~ds 248 (851)
T KOG3723|consen 182 LLRVLSAVYEKQPQPINPHLPELLALLS----QLEPEQYHLLRLLHVLIKQKQLEVLQKCIPFLIGHLKDS 248 (851)
T ss_pred HHHHHHHHHhcCCCccCcccHHHHHHhc----CCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhccc
Confidence 3567788899999999999888777664 3455544444444444553 2345556666665555543
No 336
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=46.45 E-value=3.1e+02 Score=27.27 Aligned_cols=48 Identities=21% Similarity=0.227 Sum_probs=35.4
Q ss_pred HHHHHHHHHHH-hhChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 005727 297 IEALHWISTLL-NRHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHAC 346 (680)
Q Consensus 297 ~aaL~WL~~L~-~~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~ 346 (680)
+.|..-...|. ..+.+-+.|+++.++|...+.|.+|.+ ....+|+||-
T Consensus 60 ~kA~~IF~~L~~~l~~efl~~~~~~L~~~~~~~L~~p~~--~d~~~W~LAl 108 (174)
T PF04510_consen 60 VKAFHIFICLPMPLYGEFLIPFMENLLPEISKVLLPPEE--VDVEDWVLAL 108 (174)
T ss_pred HHHHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCCchh--ccHHHHHHHH
Confidence 34666666666 556777899999999999999999865 3445565553
No 337
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=46.24 E-value=2.1e+02 Score=27.51 Aligned_cols=70 Identities=16% Similarity=0.198 Sum_probs=38.2
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhc-CCC--CHHHHHHHHHHHHHHHHh
Q 005727 157 LDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRA-ASP--DEFTRLTAITWINEFVKL 226 (680)
Q Consensus 157 L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~-~s~--d~~irl~Al~WL~e~~~l 226 (680)
.+.|.+.+..+++.|=..+.+.+..++...+..-...++-+++.++.++ .++ ....|..+++.+.++++-
T Consensus 75 ~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 75 CPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhC
Confidence 3344444444446655555566655555544332334555555555533 222 235777788888887754
No 338
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=45.67 E-value=24 Score=34.85 Aligned_cols=44 Identities=23% Similarity=0.462 Sum_probs=32.9
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHH
Q 005727 113 EEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLF 161 (680)
Q Consensus 113 ~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf 161 (680)
..-+.+|...+. ++.||++||.|+.. .++.++..|+|.+++.|-
T Consensus 72 ~~ALeLL~~~f~--d~~VR~yAV~~L~~---~~ddeL~~yLpQLVQaLk 115 (169)
T cd00869 72 LIALELLLPKFP--DQEVRAHAVQWLAR---LSNDELLDYLPQLVQALK 115 (169)
T ss_pred HHHHHHcCCcCC--ChHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHH
Confidence 334555554443 47899999999775 678889999999998765
No 339
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=45.08 E-value=3.4e+02 Score=27.38 Aligned_cols=148 Identities=12% Similarity=0.159 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcH
Q 005727 214 LTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEWE 293 (680)
Q Consensus 214 l~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~ 293 (680)
..++.-++.+.+..|..-.|++..++..+-+.-.+++.+.|+.+.++.+...+.++ .+.+++++--.+..++.
T Consensus 18 ~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amG-------pe~vL~~lPLnl~~~~~ 90 (198)
T PF08161_consen 18 PEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMG-------PEQVLSILPLNLDNADD 90 (198)
T ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCC-------HHHHHHHCCCCccCCCc
Confidence 34555566666666666678888888888887777778899999999887766665 34555555444442111
Q ss_pred HHHHHHHHHHHHHHhhCh--hhHhhhhHHHHHHHHH------hcCCCCHHHHHHHH-----HHHH---HHhh----ccch
Q 005727 294 ATRIEALHWISTLLNRHR--TEVLHFLNDIFDTLLK------ALSDPSDEVVLLVL-----EVHA---CIAK----DLQH 353 (680)
Q Consensus 294 ~tR~aaL~WL~~L~~~~p--~~~~~~l~~l~p~LL~------~LsD~s~eV~~~al-----~lLa---~Is~----~~~~ 353 (680)
. ...=-|+.=+.+.+. ..+.=|.+.++|..-. ..+.....+-.+.+ ++|+ .+|. -.+.
T Consensus 91 ~--~~~raWLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~ 168 (198)
T PF08161_consen 91 S--QPGRAWLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAES 168 (198)
T ss_pred C--CcccchhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHH
Confidence 0 111126665555532 2233334444442211 11122222222322 3333 3442 2356
Q ss_pred HHHHHHHHHHhhcccch
Q 005727 354 FRQLVVFLVHNFRVDNS 370 (680)
Q Consensus 354 F~~fm~~LL~lf~~d~~ 370 (680)
|+.|.+.|.+.+.+...
T Consensus 169 F~~~a~~L~~~L~~~~~ 185 (198)
T PF08161_consen 169 FPSFAKLLGNALYDQPD 185 (198)
T ss_pred HHHHHHHHHHHHhcCcc
Confidence 77777777777776544
No 340
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.56 E-value=7.1e+02 Score=30.61 Aligned_cols=308 Identities=17% Similarity=0.167 Sum_probs=155.9
Q ss_pred HhhccCCCCHHHHHHHHHHHHHHHHhhcc-chhhhHHHHHHHHHHhhcC---CCh-hHHHHH-HHHHHHHHHHhhccccc
Q 005727 37 VLNSFSDQDSRVRYYACEALYNIAKVVRG-DFIIFFNQIFDALCKLSAD---SDA-NVQSAA-HLLDRLVKDIVTESDQF 110 (680)
Q Consensus 37 VL~~l~D~d~rVR~~A~eaL~nI~kv~~~-~il~~f~eIfd~L~kL~aD---~d~-~Vr~gA-~~Ldrllkdiv~es~~f 110 (680)
+..-+.|.-.-||..|.--|..++|.+.. .-+..|..+|+-|+.++.. .|. -|-+-+ ..|..++|+-.+...-|
T Consensus 171 lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~F 250 (970)
T KOG0946|consen 171 LMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFF 250 (970)
T ss_pred HHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHH
Confidence 34456677777888776666555554332 1236788888888877632 222 344444 66788888766654434
Q ss_pred cHhhhHHHHHHHhc----CC----CH-HHH----HHHHHHHHHhhcCCchhh-------hhchHHHHHHHHHhcCC--CC
Q 005727 111 SIEEFIPLLRERMN----VL----NP-YVR----QFLVGWITVLDSVPDIDM-------LGFLPDFLDGLFNMLSD--SS 168 (680)
Q Consensus 111 ~L~~fIP~L~e~i~----~~----np-~vR----~~avswI~~L~sip~~~L-------i~~Lp~~L~~Lf~lLsD--~~ 168 (680)
-=..+||.|...+. .. .| .-| -.++..+..+.+.....= +-.=..+++.|+.++.. -.
T Consensus 251 rE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp 330 (970)
T KOG0946|consen 251 REGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVP 330 (970)
T ss_pred hccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCc
Confidence 44456777774332 22 11 112 224444554443222111 11223567777776654 46
Q ss_pred hhHHHHHHHHHHHHHHHhhcCC-------CCCh----HHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHhcCcccccchH
Q 005727 169 HEIRQQADSALWEFLQEIKNSP-------SVDY----GRMAEILVQRAASPD-EFTRLTAITWINEFVKLGGDQLVPYYA 236 (680)
Q Consensus 169 ~dVR~~a~~~L~~fL~ei~~~~-------~~d~----~~II~iLl~~~~s~d-~~irl~Al~WL~e~~~l~~~~l~pfLp 236 (680)
.||+..+.......++.-.... .++. +.|+-.++....+.. ...|-.+..-+..+..-....=..|+.
T Consensus 331 ~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l~ 410 (970)
T KOG0946|consen 331 ADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFLK 410 (970)
T ss_pred HhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 7899988777776666543321 1222 223333333333333 335555555554443222222233444
Q ss_pred hHHHHH------------hh--hhcCCchhHHHHH-HHH-------HH----HHHHhccCCCCCCChHhHHHHHHH---h
Q 005727 237 DILGAI------------LP--CISDKEEKIRVVA-RET-------NE----ELRAIKADPADGFDVGPILSIATR---Q 287 (680)
Q Consensus 237 ~LLp~L------------L~--~Lsds~~eIR~~A-~~~-------n~----~Ll~~v~~~~~~ldl~~iL~vL~~---~ 287 (680)
+++|.- +- .+.+.++ ...-+ ..+ |. .|.+.-.....+-|-..++...+. .
T Consensus 411 tllp~~~nst~Nsl~ag~l~~~~l~s~d~-~~nwFt~v~lmh~l~dn~~~kEeLlrV~l~~~~gn~p~tlL~~~ct~~~~ 489 (970)
T KOG0946|consen 411 TLLPSSTNSTSNSLSAGQLLLVGLSSTDS-LDNWFTAVILMHLLQDNDQLKEELLRVPLAVDTGNDPDTLLFQQCTNLKL 489 (970)
T ss_pred HHhhhhccccccchhhhhHHHHhhccchH-HHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccCCCCchHHHHHHHHHHHH
Confidence 444421 11 1222221 11100 000 11 111111111112222344444332 2
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhChhhHhhhhH--HHHHHHHHhcCCCC----HHHHHHHHHHHH
Q 005727 288 LSSEWEATRIEALHWISTLLNRHRTEVLHFLN--DIFDTLLKALSDPS----DEVVLLVLEVHA 345 (680)
Q Consensus 288 L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~--~l~p~LL~~LsD~s----~eV~~~al~lLa 345 (680)
....-.++|+.-|..|+...-+||..+..++. ..+++|+..+.|.. +.|++--|-.+.
T Consensus 490 ~~t~r~qt~vglLmlL~~WL~~cp~AV~dFLs~~s~iq~Ltt~l~~n~~~Ese~viqgl~A~lL 553 (970)
T KOG0946|consen 490 QGTSRHQTRVGLLMLLITWLYGCPDAVKDFLSESSIIQYLTTQLMDNQGSESEQVIQGLCAFLL 553 (970)
T ss_pred HhhhhHHHHHHHHHHHHHHHcCCcHHHHHHHccccHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 33455678888999999999999999988866 57888887777653 445553333333
No 341
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=43.20 E-value=6.4e+02 Score=30.00 Aligned_cols=132 Identities=15% Similarity=0.070 Sum_probs=78.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCC-
Q 005727 115 FIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD- 193 (680)
Q Consensus 115 fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d- 193 (680)
+.-.+..|+.+.++.+|..++..++.=.+.-|.-+.... +++..=-+|+|.+..||..+.+.+.-|...+ |+.|
T Consensus 276 cdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~--~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~---p~~d~ 350 (740)
T COG5537 276 CDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKIL--GLRYNGWSLSDNHEGVRLLVSKILLFLCSRI---PHTDA 350 (740)
T ss_pred HHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhh--cccccccccccchHHHHHHHHHHHHHHHhcC---CcchH
Confidence 355677889999999999888777754433222222111 3333345889999999999888877776533 3333
Q ss_pred ----hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHH
Q 005727 194 ----YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVV 256 (680)
Q Consensus 194 ----~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~ 256 (680)
++.+..-+++.+...-.-||..++.-+.++-..+-- =..-+-.+..||=|..|+=|..
T Consensus 351 ir~f~eRFk~rILE~~r~D~d~VRi~sik~l~~lr~lg~L-----~~SeIlIvsscmlDi~pd~r~~ 412 (740)
T COG5537 351 IRRFVERFKDRILEFLRTDSDCVRICSIKSLCYLRILGVL-----SSSEILIVSSCMLDIIPDSREN 412 (740)
T ss_pred HHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhccc-----chhHHHHHHHHHhcCCCcchHH
Confidence 455555555554433333777666655544333211 1234556677777776664443
No 342
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=42.92 E-value=1.1e+02 Score=28.63 Aligned_cols=72 Identities=14% Similarity=0.150 Sum_probs=54.0
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcC------C------CCHHHHHHHHHHH
Q 005727 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS------D------PSDEVVLLVLEVH 344 (680)
Q Consensus 277 l~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~Ls------D------~s~eV~~~al~lL 344 (680)
+..+++.|.+.|.+.+..+|..||+.|..+.+.-++.+...+-.-.. .++.+. | +...||..|-+++
T Consensus 36 ~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~-~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~ 114 (122)
T cd03572 36 CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSA-QIRECANYKGPPDPLKGDSLNEKVREEAQELI 114 (122)
T ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHH-HHHHHHHcCCCCCcccCcchhHHHHHHHHHHH
Confidence 57899999999999888899999999999999888777655544433 222221 2 3457888998888
Q ss_pred HHHhh
Q 005727 345 ACIAK 349 (680)
Q Consensus 345 a~Is~ 349 (680)
+-|.+
T Consensus 115 ~~if~ 119 (122)
T cd03572 115 KAIFS 119 (122)
T ss_pred HHHhc
Confidence 87764
No 343
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=41.92 E-value=7.5e+02 Score=31.24 Aligned_cols=179 Identities=16% Similarity=0.186 Sum_probs=90.1
Q ss_pred hhhhhhhHHHHh-hcc----CCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHH
Q 005727 27 ETILQQIVPPVL-NSF----SDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLV 100 (680)
Q Consensus 27 ~~yL~~Iv~~VL-~~l----~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrll 100 (680)
+-|=++|+..|. -.+ -|+|-+||..+..++.|++..|......-.-++.+++.+-...+++...+.. .+..+-+
T Consensus 463 ~~yeeEIL~~VvL~~lshi~L~~~~qvr~l~~~~l~N~a~~C~t~~~~~lldi~EA~~~rs~s~~~~l~e~~~~~~~a~~ 542 (1697)
T KOG3687|consen 463 QFYEEEILNSVVLSQLSHIPLDKDHQVRKLATQLLVNLAEGCHTHHFNSLLDIIEAVMARSLSPPPELEERDVAAYSASL 542 (1697)
T ss_pred hhhHHHhhhheeeEeeccccccchhHHHHHHHHHHHHHHhhcchhcchhHHHHHHHHHhcccCCCcchhhhhhhhhhhHH
Confidence 445566665543 222 3788999999999999999887754322234555555554444544333322 2223334
Q ss_pred HHHhhccc-----------------cccH-hhhHHHH-----HHHhcCCCHHHHHHHHHHHHHhh--cC-----Cc----
Q 005727 101 KDIVTESD-----------------QFSI-EEFIPLL-----RERMNVLNPYVRQFLVGWITVLD--SV-----PD---- 146 (680)
Q Consensus 101 kdiv~es~-----------------~f~L-~~fIP~L-----~e~i~~~np~vR~~avswI~~L~--si-----p~---- 146 (680)
.||.+.-. ++-+ +.++..+ .-.|...-..+|..+..|+..+- +. |.
T Consensus 543 ~dI~~aVlgll~~~A~kl~~lP~~ha~~v~~~l~~h~~Lhy~~PKI~~~~s~ir~~~f~~l~llRa~~~Y~lg~Pcn~~~ 622 (1697)
T KOG3687|consen 543 EDIKTAVLGLLVILATKLYTLPASHATRVYEMLVSHIQLHYKHPKILPIASSIRLQAFDFLFLLRADSLYRLGLPCNKDG 622 (1697)
T ss_pred HHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhhhhhccCccccchhhHHHHHHHHHHHHHhhcccceecccCCCcc
Confidence 44443210 0000 0011000 00111122457888888887552 11 11
Q ss_pred -hhhhhch-----------------HHHHHHHHHhcC-CCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhc
Q 005727 147 -IDMLGFL-----------------PDFLDGLFNMLS-DSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRA 205 (680)
Q Consensus 147 -~~Li~~L-----------------p~~L~~Lf~lLs-D~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~ 205 (680)
..+.+|+ ..+.+.+.+++. |.+-+|++..-.-+.+-++--......+++.+.++|....
T Consensus 623 Vv~fspyLGId~pl~p~~~p~~i~~~~~~~~~~qCl~~~~D~~v~~Lv~~~lp~~l~~k~l~~~~~i~~l~~~Lcs~~ 700 (1697)
T KOG3687|consen 623 VVRFSPYLGIDGPLSPPTGPPVVPYSLLFRVLLQCLKQESDWKVLKLVLGRLPESLRYKVLIFTSSVDQLCSALCSML 700 (1697)
T ss_pred EEEeeeeeeecCCCCCCCCCCcccHHHHHHHHHHHhcccccHHHHHHHHHHhHHHHhHHHHhcCCcHHHHHHHHHHHH
Confidence 1122333 234555667774 6777888776544444443222223446777777776654
No 344
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=41.59 E-value=58 Score=28.75 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhcc
Q 005727 212 TRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKA 269 (680)
Q Consensus 212 irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~ 269 (680)
.|..++--++.++...|-++=+|+|++|..+-....| ...|+..+.++..++.+.=.
T Consensus 5 ~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~ 61 (90)
T PF11919_consen 5 RRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQ 61 (90)
T ss_dssp HHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCc
Confidence 3566777888888888888888999999998888876 66789999999988876644
No 345
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=40.96 E-value=36 Score=28.58 Aligned_cols=54 Identities=26% Similarity=0.417 Sum_probs=35.6
Q ss_pred CCCchHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhchhhHhHhhhhc
Q 005727 516 GRYTWLLKALYGLLMLLPQVSLLYLKIQAQLFCVFLLELHSFMFNLSRDTLMQQSAAFKILRTRLK 581 (680)
Q Consensus 516 ~~~~~l~k~l~gllm~lpq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~af~~l~~rl~ 581 (680)
+++.+|+=.||-++| +|-+++++.-+-... .--+.|+-+-+| -..|++|++|++
T Consensus 14 r~~efLF~ilfIvlm-ipI~pll~~~~i~~~-~E~l~e~Y~~~~----------w~~F~~Lhnkin 67 (72)
T PF13198_consen 14 RKTEFLFFILFIVLM-IPISPLLFVWIIGKI-IEPLFELYKDWF----------WNPFNALHNKIN 67 (72)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHH----------HHhHHHHhcccc
Confidence 447899999999999 888776665332211 111334444444 678999999986
No 346
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=40.80 E-value=59 Score=31.94 Aligned_cols=49 Identities=16% Similarity=0.254 Sum_probs=37.3
Q ss_pred CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhh
Q 005727 191 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILP 244 (680)
Q Consensus 191 ~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~ 244 (680)
.++....++.|-... +++.||..|+.||. ..+.+.+.-|+|+++.++--
T Consensus 75 ~i~~~~aLeLL~~~f--~~~~VR~yAV~~L~---~~sd~eL~~yL~QLVQaLKy 123 (166)
T cd00870 75 KIDIEDALELLSPYF--TNPVVRKYAVSRLK---LASDEELLLYLLQLVQALKY 123 (166)
T ss_pred CCCHHHHHHHcCccC--CCHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHh
Confidence 456777777766654 47899999999998 46778889899888776543
No 347
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=40.74 E-value=18 Score=24.34 Aligned_cols=26 Identities=31% Similarity=0.243 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhc
Q 005727 48 VRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSA 83 (680)
Q Consensus 48 VR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~a 83 (680)
||++|..+|.++.. ++-++.|.+.+.
T Consensus 1 VR~~Aa~aLg~igd----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----------HHHHHHHHHHhc
Confidence 79999999877632 455666665543
No 348
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=40.18 E-value=1.9e+02 Score=26.01 Aligned_cols=69 Identities=20% Similarity=0.190 Sum_probs=48.4
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchH--HHHHHHHHh-----c-CCCChhHHHHHHHHHH
Q 005727 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLP--DFLDGLFNM-----L-SDSSHEIRQQADSALW 180 (680)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp--~~L~~Lf~l-----L-sD~~~dVR~~a~~~L~ 180 (680)
....+..|..|+.+.||.+...++..+..+.+-.+..+..++- .|+..+.+. . .|.+..||+.+..++.
T Consensus 35 ~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 35 PKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 4557888899999999999999999999998877766554443 233333331 1 2457788987765544
No 349
>KOG3613 consensus Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=40.15 E-value=8.9e+02 Score=32.35 Aligned_cols=62 Identities=24% Similarity=0.284 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHHHhhcC-CchhhhhchHHHHHHHHHhcC-CCChhHHHHHHHHHHHHHHHh
Q 005727 125 VLNPYVRQFLVGWITVLDSV-PDIDMLGFLPDFLDGLFNMLS-DSSHEIRQQADSALWEFLQEI 186 (680)
Q Consensus 125 ~~np~vR~~avswI~~L~si-p~~~Li~~Lp~~L~~Lf~lLs-D~~~dVR~~a~~~L~~fL~ei 186 (680)
|..-.-|..++.=|..+.-. |-+....|+|.+.+.|...|. ++++.||.++--++..++-.+
T Consensus 1498 d~e~e~ra~~LkRiaf~ifsSp~Dqy~~~lp~iqErl~~~Lrv~~~~~lk~~vFL~~RVLLLR~ 1561 (1749)
T KOG3613|consen 1498 DQELEQRAMLLKRIAFLIFSSPLDQYLGYLPDIQERLADLLRVSQSPKLKKAVFLFFRVLLLRI 1561 (1749)
T ss_pred hHHHHHHHHHHHhhHhheeeCcHHhhhhhchhHHHHHHHhcccCCCchHHHHHHHHHHHHHHhc
Confidence 44567888888888866654 445678899999999999998 999999999988888887544
No 350
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=40.15 E-value=1.2e+03 Score=32.29 Aligned_cols=205 Identities=18% Similarity=0.201 Sum_probs=110.9
Q ss_pred CCchhhhhchHHHHHHHHHhcCCC---ChhHHHHHHHHHHHHHHHhhcCCCCC---hHHHHHHHHHhcCCCCHHHHHHHH
Q 005727 144 VPDIDMLGFLPDFLDGLFNMLSDS---SHEIRQQADSALWEFLQEIKNSPSVD---YGRMAEILVQRAASPDEFTRLTAI 217 (680)
Q Consensus 144 ip~~~Li~~Lp~~L~~Lf~lLsD~---~~dVR~~a~~~L~~fL~ei~~~~~~d---~~~II~iLl~~~~s~d~~irl~Al 217 (680)
+....+..+++..+=|+++..+-- ..+.+.....++..+-+.++-.+... ..+-|..++....-..++.+..|+
T Consensus 863 ~~~e~~~~fl~~~llgil~~f~~~l~~~~~~~~~k~~tl~~I~~~i~~~g~~~v~~~~~~i~~~L~~~~~~~~~l~~~~~ 942 (2382)
T KOG0890|consen 863 ISSELFQDFLQNHLLGILAVFSSRLLEPSTIIEQKKKTLKGIKKLISFMGSKAVSTRLPKIEFLLQFGTLFKDELRFLAL 942 (2382)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHhHHHHHhhccHHHHHHHhHHHHHHHHHhhhcchhHHHHHH
Confidence 344567888888888888766442 33444443444544444443322122 233444444442233456677766
Q ss_pred HHHHHHHHh-cCcccccchHh-HHHHHhhhhcCCch-hHHHHHHHH---HHH-HHHhccC--------------------
Q 005727 218 TWINEFVKL-GGDQLVPYYAD-ILGAILPCISDKEE-KIRVVARET---NEE-LRAIKAD-------------------- 270 (680)
Q Consensus 218 ~WL~e~~~l-~~~~l~pfLp~-LLp~LL~~Lsds~~-eIR~~A~~~---n~~-Ll~~v~~-------------------- 270 (680)
.....|+.. ....+-+.++. +++.++|.+.+.+. ++-..+... |.. +.....+
T Consensus 943 ~~w~~f~r~l~~~~~~~~~~~~i~~~l~p~l~~~~~~~v~~i~~~i~~~~~d~i~~~~~~~~~l~~~p~~~~~~~~~~~~ 1022 (2382)
T KOG0890|consen 943 KAWHIFIRILNDNEKSDILDRNIIAALFPLLEHIELNLVSSILDFISLDNRDNIQILKSDIPILPSIPELGNLKAAIQEA 1022 (2382)
T ss_pred HHHHHHHHHHhhhhhcchhhhHHHHHHHHHhccccHHHHHHHHHHHHHhhHHHHHhhhccccccCCchHHHHHHHHHHHH
Confidence 644445443 33444556666 68888888853332 221111100 000 0000000
Q ss_pred --CCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhC--------hhhHh--hhhHHHHHHHHHhcCCCCHHHHH
Q 005727 271 --PADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRH--------RTEVL--HFLNDIFDTLLKALSDPSDEVVL 338 (680)
Q Consensus 271 --~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~--------p~~~~--~~l~~l~p~LL~~LsD~s~eV~~ 338 (680)
-.+.-++...+......+.+++..+|.-++.=+..+..+. ++.+. +-+..++.+|+++..+...+...
T Consensus 1023 r~~~~~~~l~~~l~~~~~~~~~enl~vr~~~l~~l~~~~~k~~e~~~~~~~~~~~~~~~l~ql~~~Ll~gc~k~~~~~~~ 1102 (2382)
T KOG0890|consen 1023 RGLLSEDDLDDQLRDFMKKLKHENLPVRVEKLQDLEFLIGKNREKLDVLALKELGPEEDLSQLLTVLLDGCQKKTSQLEE 1102 (2382)
T ss_pred HhhccccchhhhhHHHHHHhHhhhhHHHHHHHHHHHHHHhhhhhHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 0111156777888888899999999999998877766632 22332 55667777888776655544444
Q ss_pred HHHHHHHHHh
Q 005727 339 LVLEVHACIA 348 (680)
Q Consensus 339 ~al~lLa~Is 348 (680)
.....|+.++
T Consensus 1103 ~~akcLg~lg 1112 (2382)
T KOG0890|consen 1103 LCAKCLGELG 1112 (2382)
T ss_pred HHHHHHHhhh
Confidence 4445666555
No 351
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=40.13 E-value=26 Score=34.91 Aligned_cols=81 Identities=20% Similarity=0.216 Sum_probs=47.8
Q ss_pred hchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcc
Q 005727 151 GFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQ 230 (680)
Q Consensus 151 ~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~ 230 (680)
...|.-++.++....-.+++....+-+.| ..-. .++....++.|-.... ++.||..|+.|+.. .+.++
T Consensus 41 ~~~p~aL~~~L~sv~w~~~~~~~~~~~ll----~~W~---~~~p~~AL~LL~~~f~--~~~VR~yAv~~L~~---~~d~~ 108 (184)
T PF00613_consen 41 MNNPEALPKLLRSVDWWNPEEVSEAYQLL----LQWP---PISPEDALELLSPNFP--DPFVRQYAVRRLES---LSDEE 108 (184)
T ss_dssp TTSGGGHHHHHTTSTTTSHHHHHHHHHHH----HTSH---CTTHHHHHHCTSTT-----HHHHHHHHHHHCT---S-HHH
T ss_pred hhCchHHHHHHhhCCCCchhhHHHHHHHH----HcCC---CCCHHHHHHHHHhhcc--HHHHHHHHHHHHHH---cCchH
Confidence 33455566666666666665333333333 2221 2455555555554443 48999999999974 66778
Q ss_pred cccchHhHHHHHh
Q 005727 231 LVPYYADILGAIL 243 (680)
Q Consensus 231 l~pfLp~LLp~LL 243 (680)
+.-|+|+++.++-
T Consensus 109 l~~yLpQLVQaLr 121 (184)
T PF00613_consen 109 LLFYLPQLVQALR 121 (184)
T ss_dssp HHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhe
Confidence 8888888887763
No 352
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.96 E-value=2.3e+02 Score=34.14 Aligned_cols=43 Identities=21% Similarity=0.245 Sum_probs=20.4
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHH
Q 005727 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLND 320 (680)
Q Consensus 278 ~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~ 320 (680)
+.+...|...+..+....-..++..+....++.+.+....++.
T Consensus 186 eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQ 228 (700)
T PRK12323 186 GHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQ 228 (700)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4445554444432222222335556666666666655554443
No 353
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=38.27 E-value=5.1e+02 Score=27.39 Aligned_cols=143 Identities=13% Similarity=0.165 Sum_probs=87.5
Q ss_pred CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC------c--ccccchHhHHHHHhhhhcCCc-----hhHHHHHH
Q 005727 192 VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG------D--QLVPYYADILGAILPCISDKE-----EKIRVVAR 258 (680)
Q Consensus 192 ~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~------~--~l~pfLp~LLp~LL~~Lsds~-----~eIR~~A~ 258 (680)
.+++++.+.++.-+.+++.. ..+++-+..+..... . .+.-.+-..+|-++..+.+++ +++++.|.
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~--e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~ 137 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTY--ELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAE 137 (262)
T ss_pred CCchhHHHHHhCccCCCCcH--HHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 57899999999999887633 223334444444321 1 233334456677777777666 56666554
Q ss_pred HHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhh-hhHHHHHHHHHhcCCCCHHHH
Q 005727 259 ETNEELRAIKADPADGFDVGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLH-FLNDIFDTLLKALSDPSDEVV 337 (680)
Q Consensus 259 ~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~-~l~~l~p~LL~~LsD~s~eV~ 337 (680)
.. .+...+ ...-++..++......-..+ .=+|+..+...--+.+.| |.-.++..|+..|....+-++
T Consensus 138 ~L----a~~a~~-~~~~~La~il~~ya~~~fr~-------~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~ 205 (262)
T PF14225_consen 138 AL----AQVAEA-QGLPNLARILSSYAKGRFRD-------KDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLR 205 (262)
T ss_pred HH----HHHHHh-CCCccHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHH
Confidence 32 233322 12234555554333222211 234777777777677764 556788899999999889999
Q ss_pred HHHHHHHHHHh
Q 005727 338 LLVLEVHACIA 348 (680)
Q Consensus 338 ~~al~lLa~Is 348 (680)
..++++|..+-
T Consensus 206 ~~~L~iL~~ll 216 (262)
T PF14225_consen 206 RKTLQILKVLL 216 (262)
T ss_pred HHHHHHHHHHh
Confidence 99999988776
No 354
>PF07834 RanGAP1_C: RanGAP1 C-terminal domain; InterPro: IPR009109 Ran GTPase is a ubiquitous protein required for nuclear transport, spindle assembly, nuclear assembly and mitotic cell cycle regulation. RanGTPase activating protein 1 (RanGAP1) is one of several RanGTPase accessory proteins. During interphase, RanGAP1 is located in the cytoplasm, while during mitosis it becomes associated with the kinetochores []. Cytoplasmic RanGAP1 is required for RanGTPase-directed nuclear transport. The activity of RanGAP1 requires the accessory protein RanBP1. RanBP1 facilitates RanGAP1 hydrolysis of Ran-GTP, both directly and by promoting the dissociation of Ran-GTP from transport receptors, which would otherwise block RanGAP1-mediated hydrolysis. RanGAP1 is thought to bind to the Switch 1 and Switch 2 regions of RanGTPase. The Switch 2 region can be buried in complexes with karyopherin-beta2, and requires the interaction with RanBP1 to permit RanGAP1 function. RanGAP1 can undergo SUMO (small ubiquitin-like modifier) modification, which targets RanGAP1 to RanBP2/Nup358 in the nuclear pore complex, and is required for association with the nuclear pore complex and for nuclear transport []. The enzymes involved in SUMO modification are located on the filaments of the nuclear pore complex. The RanGAP1 N-terminal domain is fairly well conserved between vertebrate and fungal proteins, but yeast does not contain the C-terminal domain. The C-terminal domain is SUMO-modified and required for the localisation of RanGAP1 at the nuclear pore complex. The structure of the C-terminal domain is multihelical, consisting of two curved alpha/alpha layers in a right-handed superhelix.; GO: 0005098 Ran GTPase activator activity, 0007165 signal transduction; PDB: 2IO2_C 2GRQ_B 3UIN_C 2GRO_B 3UIP_C 2IO3_C 2GRN_B 3UIO_C 2GRP_B 2GRR_B ....
Probab=36.82 E-value=2.4e+02 Score=28.26 Aligned_cols=125 Identities=21% Similarity=0.255 Sum_probs=68.0
Q ss_pred hhhhhhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHH---hhcCCChhHHHHH-HHHHH
Q 005727 23 FFYSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCK---LSADSDANVQSAA-HLLDR 98 (680)
Q Consensus 23 ~~~~~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~k---L~aD~d~~Vr~gA-~~Ldr 98 (680)
.-.++.||..=.+.-+..|||+-+.. |......... ..+.+++.| ++.| +.+||.++ +..|+
T Consensus 28 p~~v~~FL~~PS~ekLl~LG~~rs~l----------i~qqvd~~d~---~k~~e~~lKVsSv~~~-~~~vk~av~~~~Da 93 (183)
T PF07834_consen 28 PVTVATFLSSPSPEKLLQLGDKRSQL----------IAQQVDTSDP---EKVAEAFLKVSSVYND-ESEVKSAVLQCIDA 93 (183)
T ss_dssp --HHHHHHHS--HHHHHCTGTTHHHH----------HHHCS-TTSH---HHHHHHHHHHHCT--S-SHHHHHHHHHHHHH
T ss_pred CcCHHHHHhCCCHHHHHHhChHHHHH----------HHHHHccccH---HHHHHHHHHHHHHHcC-cHHHHHHHHHHHHH
Confidence 34567777777788888888762221 1111111111 223444444 3455 58999999 89999
Q ss_pred HHHHHhhccccccHhhhHHHHHHHhc---CCCHHHHH-----HHHHHHHHhhcCCchhhhhchHHHHHHHH-HhcCCCCh
Q 005727 99 LVKDIVTESDQFSIEEFIPLLRERMN---VLNPYVRQ-----FLVGWITVLDSVPDIDMLGFLPDFLDGLF-NMLSDSSH 169 (680)
Q Consensus 99 llkdiv~es~~f~L~~fIP~L~e~i~---~~np~vR~-----~avswI~~L~sip~~~Li~~Lp~~L~~Lf-~lLsD~~~ 169 (680)
+++....... +.-..|+..|+-.|+ .++ .++. ..+..++.+ -. -.|+|.-...++ .+++-|++
T Consensus 94 ll~kaFs~~~-~~~~~f~n~LLV~mGLLKsEd-K~k~i~~l~G~l~~Leh~---vq---q~YFp~~~~~~L~aFlsKp~~ 165 (183)
T PF07834_consen 94 LLKKAFSSAS-FQSNSFLNSLLVHMGLLKSED-KFKPISNLPGPLLALEHA---VQ---QDYFPKSTRPLLQAFLSKPNK 165 (183)
T ss_dssp HHHHHHCSTT-S-HHHHHHHHHHHTTSSSSSS-HHHHHSHHHHHHHHHHHH---CC---STTS-GGGHHHHHHHHCSCCC
T ss_pred HHHHHHhccc-cchHHHHHHHHHHhccccccc-ccCCCCCCchHHHHHHHH---hh---hhhccHHHHHHHHHHHcCCcc
Confidence 9998886543 466778888888887 444 4442 223333332 22 357776666654 45555553
No 355
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=36.81 E-value=2.8e+02 Score=28.61 Aligned_cols=104 Identities=18% Similarity=0.168 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhc-----cc--cccHhhhHHHHHHHhc--CCCHHHHHHHHHHHH
Q 005727 69 IFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTE-----SD--QFSIEEFIPLLRERMN--VLNPYVRQFLVGWIT 139 (680)
Q Consensus 69 ~~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkdiv~e-----s~--~f~L~~fIP~L~e~i~--~~np~vR~~avswI~ 139 (680)
..-..||++||+.+.-.....|+-|+.+...+++.-.+ .. .-.-+.-+--...++. ..--+.|.+||+...
T Consensus 66 ~~~~~If~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~l~~~l~~~~~~~~~~l~~~~~~ia~~~~f~YSRl~AIGL~~ 145 (216)
T PF11264_consen 66 EDKDSIFNALCQALGFDPEQYRQDAEKLEEWAKGKSIEDLLSWLSQKGGEGDNPLAAILQAIASNPKFKYSRLFAIGLFR 145 (216)
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccchHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 34578999999988655567888886665554422111 00 1112223333444442 233589999999999
Q ss_pred HhhcCCchhh--hhchHHHHHHHHHhcCCCChhHH
Q 005727 140 VLDSVPDIDM--LGFLPDFLDGLFNMLSDSSHEIR 172 (680)
Q Consensus 140 ~L~sip~~~L--i~~Lp~~L~~Lf~lLsD~~~dVR 172 (680)
.|....+... -...|+.+..|...|+=+...|.
T Consensus 146 LLe~a~~~~~~~~~~~~~~l~~l~~~l~ls~~kv~ 180 (216)
T PF11264_consen 146 LLELAGADLVKDEEKRPEALEKLSEALGLSKEKVE 180 (216)
T ss_pred HHHhcCcccccChhhHHHHHHHHHHHcCCCHHHHH
Confidence 8887665222 23566777777766666555554
No 356
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.13 E-value=1.1e+03 Score=30.83 Aligned_cols=113 Identities=18% Similarity=0.147 Sum_probs=66.9
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCC-----hHHHHHHHHHhcCCC------CHHHH----HHHHHHH
Q 005727 156 FLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVD-----YGRMAEILVQRAASP------DEFTR----LTAITWI 220 (680)
Q Consensus 156 ~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d-----~~~II~iLl~~~~s~------d~~ir----l~Al~WL 220 (680)
++..|.++-.|.-++||+.|++.+=+.+..=....... +-.+|..|+....++ .++++ .+.+..|
T Consensus 998 ll~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~lti 1077 (1610)
T KOG1848|consen 998 LLVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTI 1077 (1610)
T ss_pred HHHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhH
Confidence 34555667788889999998777444433222211111 233444444433322 13442 3455566
Q ss_pred HHHHHhcCc---------ccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhc
Q 005727 221 NEFVKLGGD---------QLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (680)
Q Consensus 221 ~e~~~l~~~---------~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v 268 (680)
+-++++-++ ++..-+..++.-+....+|..+++...|-++.+++...+
T Consensus 1078 sgIaklf~e~fk~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~si 1134 (1610)
T KOG1848|consen 1078 SGIAKLFSENFKLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSI 1134 (1610)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHH
Confidence 666665443 233345667777777888999999999999888766443
No 357
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=35.47 E-value=4.3e+02 Score=25.70 Aligned_cols=73 Identities=15% Similarity=0.217 Sum_probs=45.7
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccch
Q 005727 158 DGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYY 235 (680)
Q Consensus 158 ~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfL 235 (680)
+.+.+.+.+.+.=+|+.+..++..+... ..+.+.+.+++-....+.+..||..+-.+|.++....++...+|+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l 180 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK-----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFL 180 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 5666777777777777776665544432 246677777777777766777777665566665544444444443
No 358
>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]
Probab=35.05 E-value=9.1e+02 Score=29.39 Aligned_cols=154 Identities=21% Similarity=0.216 Sum_probs=84.5
Q ss_pred hhhhhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHH---------h--hcCCChhHHHHH
Q 005727 25 YSETILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCK---------L--SADSDANVQSAA 93 (680)
Q Consensus 25 ~~~~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~k---------L--~aD~d~~Vr~gA 93 (680)
++..|++.|+.-......|-+..+|..++..+..|++-..-..-.-|-++.+--.. - +.++.+.|--||
T Consensus 239 ~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sfi~ii~~~~en~~~s~l~~~cdii~tnel~w~~~ 318 (993)
T COG5234 239 ESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESFIDIIELMTENMFLSPLENTCDIIITNELVWHGA 318 (993)
T ss_pred chhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHHHHHHHhcccccchhhhhCccceeecchHHHHHH
Confidence 35678999999999999999999999999988887764433322223333332110 0 234445555555
Q ss_pred HHHHHHHHHHhhccccccHhh--hHHHHHHHhcC--------CCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHH-H-
Q 005727 94 HLLDRLVKDIVTESDQFSIEE--FIPLLRERMNV--------LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGL-F- 161 (680)
Q Consensus 94 ~~Ldrllkdiv~es~~f~L~~--fIP~L~e~i~~--------~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~L-f- 161 (680)
.+.-++.+ .+..++.. +.|.+...++- +...+|...+-.+-.+.......+.+-+...|-.| .
T Consensus 319 i~~~ala~-----~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss~f~vWs~~r~~S~s~~~~lqt~L~hll~~ 393 (993)
T COG5234 319 ILFFALAG-----AGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSSCFFVWSFYRCYSKSAIEGLQTNLIHLLLQ 393 (993)
T ss_pred HHHHHHhh-----ccccchhhhhhhhheccccceeehheeeeccceeecccceeeeeeeeccccccchhHHHHHHHHHHh
Confidence 22222322 11122222 34444444432 12245555554444443332333343344433333 2
Q ss_pred HhcCCCChhHHHHHHHHHHHHH
Q 005727 162 NMLSDSSHEIRQQADSALWEFL 183 (680)
Q Consensus 162 ~lLsD~~~dVR~~a~~~L~~fL 183 (680)
+.+-||.-.||.+|..+|-+.+
T Consensus 394 ~alFDpel~vRr~a~Aal~E~i 415 (993)
T COG5234 394 TALFDPELNVRRAATAALFEVI 415 (993)
T ss_pred hhhcCchhhhhhHHHHHHHHHh
Confidence 3778999999999888866554
No 359
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=34.97 E-value=97 Score=33.78 Aligned_cols=128 Identities=19% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcc------chhhhHHHHHHHHH-HhhcCCChhHHHHH--HHHHHHHHHHhhccccccHhhhHHHH
Q 005727 49 RYYACEALYNIAKVVRG------DFIIFFNQIFDALC-KLSADSDANVQSAA--HLLDRLVKDIVTESDQFSIEEFIPLL 119 (680)
Q Consensus 49 R~~A~eaL~nI~kv~~~------~il~~f~eIfd~L~-kL~aD~d~~Vr~gA--~~Ldrllkdiv~es~~f~L~~fIP~L 119 (680)
|+|+-|.+.+=....+. .-+.-|++-...|- +.+.++.++++++- .-+|++.||-.. ++..|
T Consensus 291 rkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~---------i~k~L 361 (432)
T COG5231 291 RKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYE---------IVKVL 361 (432)
T ss_pred cCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHH---------HHHHH
Q ss_pred HHHhcCCCHH-HHHHHHHHHHHhhc-CCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q 005727 120 RERMNVLNPY-VRQFLVGWITVLDS-VPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQE 185 (680)
Q Consensus 120 ~e~i~~~np~-vR~~avswI~~L~s-ip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~e 185 (680)
.+.++..+|. .-+.||+=|..+.. .|...-.--=-.--..++.+++.++++||-+|-+++..++.+
T Consensus 362 ~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 362 KKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred HHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
No 360
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=34.91 E-value=6.2e+02 Score=27.42 Aligned_cols=212 Identities=17% Similarity=0.194 Sum_probs=120.6
Q ss_pred HHHHHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCc----hhhhhchHHHHHHHHHhcCCC-----C
Q 005727 98 RLVKDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPD----IDMLGFLPDFLDGLFNMLSDS-----S 168 (680)
Q Consensus 98 rllkdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~----~~Li~~Lp~~L~~Lf~lLsD~-----~ 168 (680)
.+++.|+.+ -++.+-..++...+.+...++..+..+.+-.+ .++..+++-=++++-+++.-. .
T Consensus 48 ~l~~~iL~~--------~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~ 119 (330)
T PF11707_consen 48 ELIRSILQN--------HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEK 119 (330)
T ss_pred HHHHHHHHH--------HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccc
Confidence 356666644 27777888888888777788888888877333 345556655555555555221 1
Q ss_pred --------hhHHHHHHHHHHHHHHHhhcCCC---CChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC-----cccc
Q 005727 169 --------HEIRQQADSALWEFLQEIKNSPS---VDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGG-----DQLV 232 (680)
Q Consensus 169 --------~dVR~~a~~~L~~fL~ei~~~~~---~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~-----~~l~ 232 (680)
++||......+-.|++....... ..-.+++..+...+...++++-...++.+.+-+-..+ ....
T Consensus 120 ~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~ 199 (330)
T PF11707_consen 120 DSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCK 199 (330)
T ss_pred cccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhh
Confidence 28998876665555542211000 0123457777777877667777777777765442221 1122
Q ss_pred cchHhHHHHHhhhhcCCch----hHHHHHHHHHHHHHHhccCCCCCCC--------------------------hHhHHH
Q 005727 233 PYYADILGAILPCISDKEE----KIRVVARETNEELRAIKADPADGFD--------------------------VGPILS 282 (680)
Q Consensus 233 pfLp~LLp~LL~~Lsds~~----eIR~~A~~~n~~Ll~~v~~~~~~ld--------------------------l~~iL~ 282 (680)
-|=+..+..|.....+.++ .+++.|.+. ++.++.+++.++- ...++-
T Consensus 200 ~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~f---L~~lcT~p~~Gv~f~d~~~~~~~~~~~~~~~~~~~~~~~~Nk~L~ 276 (330)
T PF11707_consen 200 LFNEWTLSQLASLYSRDGEDEKSSVADLVHEF---LLALCTDPKHGVCFPDNGWYPRESDSGVPVTINNKSFKINNKLLL 276 (330)
T ss_pred hcCHHHHHHHHHHhcccCCcccchHHHHHHHH---HHHHhcCCCcccccCCCCcCcCcccccccccccCCCCCcccHHHH
Confidence 3444556666665555555 566655544 4455544322211 123444
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHH
Q 005727 283 IATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFD 323 (680)
Q Consensus 283 vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p 323 (680)
.+...++- .+..+.. +.+..+.+.||+=+.+|+...-.
T Consensus 277 ~ll~~lkp-~e~~~q~--~Lvl~Il~~~PeLva~Y~~~~~~ 314 (330)
T PF11707_consen 277 NLLKKLKP-WEDDRQQ--ELVLKILKACPELVAPYFNNLPY 314 (330)
T ss_pred HHHHHCCC-CccHHHH--HHHHHHHHHChHHHHHHHHhhhh
Confidence 44445543 3333433 34788899999988888776533
No 361
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.68 E-value=1.2e+03 Score=30.80 Aligned_cols=243 Identities=16% Similarity=0.224 Sum_probs=124.0
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhcc---ccc
Q 005727 35 PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTES---DQF 110 (680)
Q Consensus 35 ~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es---~~f 110 (680)
|-........++.||.-..+++. .++-..|..||..+-....|...++-..+ +.+...+.+..... ..-
T Consensus 1040 Pfe~im~~s~s~~Irelv~rC~~-------~nikSGWk~if~i~~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~ 1112 (1514)
T KOG0929|consen 1040 PFEHIMKRSSSAEIRELVVRCIS-------SNIKSGWKNIFKIFTTAASDSSKNIVELAFETVSKILQELFENVFPQEMD 1112 (1514)
T ss_pred cchHHhhccCcchhHHHHHhhhh-------hhhhhhhhHHHHHHHHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhH
Confidence 33444445677888877666654 23345688888888777777766655555 44443444333221 112
Q ss_pred cHhhhHHHHHHHhcC------CCHHHHH---HHHHHHHH--hhcCC-------chhhhhchHHHHHHHHHhcCCCChhHH
Q 005727 111 SIEEFIPLLRERMNV------LNPYVRQ---FLVGWITV--LDSVP-------DIDMLGFLPDFLDGLFNMLSDSSHEIR 172 (680)
Q Consensus 111 ~L~~fIP~L~e~i~~------~np~vR~---~avswI~~--L~sip-------~~~Li~~Lp~~L~~Lf~lLsD~~~dVR 172 (680)
++..-++-+.+.... ..+.+|. -+-..... ..... +...-.|+|.++. +-....|..++||
T Consensus 1113 sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~-ls~i~~~~~~~vr 1191 (1514)
T KOG0929|consen 1113 SFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQ-LSKIINDYRLEVR 1191 (1514)
T ss_pred HHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhh-hhHHhhccHHHHH
Confidence 233444444444431 1223321 11111111 11111 1223456666654 4445559999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHhc---CCCC-HHHHHHHHHHHHHHH--------Hhc---CcccccchH
Q 005727 173 QQADSALWEFLQEIKNSPSVD-YGRMAEILVQRA---ASPD-EFTRLTAITWINEFV--------KLG---GDQLVPYYA 236 (680)
Q Consensus 173 ~~a~~~L~~fL~ei~~~~~~d-~~~II~iLl~~~---~s~d-~~irl~Al~WL~e~~--------~l~---~~~l~pfLp 236 (680)
+.+-+.+-..+.+-......+ +..+..++..-. ..++ +..+ -+|+.+=+ .+- -..+-+-||
T Consensus 1192 ~~al~vlF~il~~~g~~F~~~~We~v~~~~fpIF~~~~~~~~~~~~---~eW~~tT~~~Al~~~v~lf~~~~~~l~~lL~ 1268 (1514)
T KOG0929|consen 1192 KRALEVLFDILKEHGDDFSKEFWEDVFRILFPIFDNVKLDEDESEK---DEWLSTTCNHALQALVDLFTQFFKQLNNLLP 1268 (1514)
T ss_pred HHHHHHHHHHHHhhhhhccHHHHHHHHHheeecccccCcccchhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888887665543333 456666333221 2111 1112 12555432 221 123345688
Q ss_pred hHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhc
Q 005727 237 DILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQL 288 (680)
Q Consensus 237 ~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L 288 (680)
+++..+..|+.-++..+-..-..+...++...+..-..-+.+++.+.+.+.+
T Consensus 1269 ~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~~~~e~~ 1320 (1514)
T KOG0929|consen 1269 KVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICNCILEAF 1320 (1514)
T ss_pred HHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHHHHHHHH
Confidence 8888888888877777666655665544333322111223455555554444
No 362
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=33.75 E-value=6e+02 Score=26.95 Aligned_cols=56 Identities=23% Similarity=0.243 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHhhChhhHhhhhH--HHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 005727 293 EATRIEALHWISTLLNRHRTEVLHFLN--DIFDTLLKALSDPSDEVVLLVLEVHACIA 348 (680)
Q Consensus 293 ~~tR~aaL~WL~~L~~~~p~~~~~~l~--~l~p~LL~~LsD~s~eV~~~al~lLa~Is 348 (680)
+..|.++|..+|++.+..-.++..|+- +++|..++.+.-.++.....|.-.+.+|-
T Consensus 110 E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 110 EYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred chhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 568999999999999998888888754 79999999998776666667777777766
No 363
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=33.51 E-value=2.3e+02 Score=36.11 Aligned_cols=45 Identities=27% Similarity=0.479 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHH
Q 005727 207 SPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIR 254 (680)
Q Consensus 207 s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR 254 (680)
-+|.+||..|++||+ .++.+.++.|+|+++.++---+-...+-+|
T Consensus 901 fPDqeVR~~AVqwi~---~ls~DeL~d~LPQlVQALK~E~yl~S~Lv~ 945 (1639)
T KOG0905|consen 901 FPDQEVRAHAVQWIA---RLSNDELLDYLPQLVQALKFELYLKSALVQ 945 (1639)
T ss_pred CCcHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 357899999999997 466778899999998876543333333333
No 364
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=32.18 E-value=7.6e+02 Score=27.61 Aligned_cols=143 Identities=18% Similarity=0.226 Sum_probs=79.6
Q ss_pred hhhchHHHHHHHHHhcCCCCh----hHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHH-HHHHH
Q 005727 149 MLGFLPDFLDGLFNMLSDSSH----EIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAIT-WINEF 223 (680)
Q Consensus 149 Li~~Lp~~L~~Lf~lLsD~~~----dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~-WL~e~ 223 (680)
+-.++|-|++|+..+---+|+ -+|+..+.=+..|+... +....-.+- .+..+....+++.+..+++ ....|
T Consensus 141 i~k~lpl~lqGl~~~~~~~dayL~~~l~~ii~~y~~~Fl~~~---~~~~~~~l~-~~~~~~~~~~~~l~~~il~~i~~~f 216 (373)
T PF14911_consen 141 IRKSLPLFLQGLGRLSQRQDAYLNQQLRNIIQQYLPRFLPAS---PSKLVARLS-TLLSAFTPRNEELRKFILQVIRSNF 216 (373)
T ss_pred HHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHhHhccCC---Ccccccccc-ccccchhhhhhHHHHHHHHHHHHHH
Confidence 456899999999754433333 34455555555554322 122211111 2233333446677777777 44567
Q ss_pred HHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhc--CCCcHHHHHHHHH
Q 005727 224 VKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQL--SSEWEATRIEALH 301 (680)
Q Consensus 224 ~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L--~~~~~~tR~aaL~ 301 (680)
....|...-|++..++..|...+.... + ...+..+. +++.+++.+.+++ -++...+|.-|.+
T Consensus 217 l~~~~~~p~p~l~~vL~fl~~Ll~~~~---~----~~~~~~~~---------~~~~~lp~lL~c~~~v~e~~~~k~~a~e 280 (373)
T PF14911_consen 217 LEFKGSAPPPRLASVLAFLQQLLKRLQ---R----QNENQILT---------LLRLVLPSLLECLMLVNEEPQVKKLATE 280 (373)
T ss_pred hcCCCCCCCCcHHHHHHHHHHHHHhcC---c----ccchhHHH---------HHHHhhHHHHHHHhhcCCCcchhHHHHH
Confidence 888888888888888888877766421 0 00011001 1233444433333 2446667888888
Q ss_pred HHHHHHhhCh
Q 005727 302 WISTLLNRHR 311 (680)
Q Consensus 302 WL~~L~~~~p 311 (680)
.+..+.+.|.
T Consensus 281 ~l~~mv~~~~ 290 (373)
T PF14911_consen 281 LLQYMVESCQ 290 (373)
T ss_pred HHHHHHHccc
Confidence 8877777765
No 365
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=32.00 E-value=66 Score=31.08 Aligned_cols=104 Identities=15% Similarity=0.128 Sum_probs=67.3
Q ss_pred HHhhhhcC--CchhHHHHHHHHHHHHHHhccCCCCCCChH-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhh
Q 005727 241 AILPCISD--KEEKIRVVARETNEELRAIKADPADGFDVG-PILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHF 317 (680)
Q Consensus 241 ~LL~~Lsd--s~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~-~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~ 317 (680)
.++..+.. ..+++|..|.-+...+++..++ ++. .+-+.+...+.+......+.++..+.++..+.|+-..+.
T Consensus 7 ~lL~~L~~~~~~~~~r~~a~v~l~k~l~~~~~-----~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l 81 (157)
T PF11701_consen 7 TLLTSLDMLRQPEEVRSHALVILSKLLDAARE-----EFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL 81 (157)
T ss_dssp HHHHHHHCTTTSCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred HHHHHhcccCCCHhHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence 34444443 4677888887776666544322 122 333455555655555588889999999999988865543
Q ss_pred --hHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhh
Q 005727 318 --LNDIFDTLLKALS--DPSDEVVLLVLEVHACIAK 349 (680)
Q Consensus 318 --l~~l~p~LL~~Ls--D~s~eV~~~al~lLa~Is~ 349 (680)
.+++.+.+++... .++..+...++++++.-|.
T Consensus 82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~ 117 (157)
T PF11701_consen 82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI 117 (157)
T ss_dssp CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT
T ss_pred HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc
Confidence 4567777777777 4455666688899998773
No 366
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.98 E-value=1.2e+03 Score=29.75 Aligned_cols=133 Identities=15% Similarity=0.143 Sum_probs=76.9
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCC-C-hHHH
Q 005727 120 RERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSV-D-YGRM 197 (680)
Q Consensus 120 ~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~-d-~~~I 197 (680)
..|.+|..|.+|.-++.-|+.=...-|..+ .=+.+|+.+==.|+|.+.+||..+-.+|..|...=...+.+ . ...+
T Consensus 293 VHRYRDV~~~IRaiCiqeLgiWi~~yP~~F--l~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRF 370 (1048)
T KOG2011|consen 293 VHRYRDVDPDIRAICIQELGIWIKSYPEIF--LSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRF 370 (1048)
T ss_pred eeecccCchHHHHHHHHHHHHHHHhccHHH--hcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 456679999999999988886554444322 22466777777899999999999888877776431101111 1 1233
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHH
Q 005727 198 AEILVQRA-ASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARE 259 (680)
Q Consensus 198 I~iLl~~~-~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~ 259 (680)
=.-+++.+ .+-+..||...+.-.-.. . -..++ -.+-+-.+.++|-|+++.++.+|..
T Consensus 371 K~RIVeMadrd~~~~Vrav~L~~~~~~--~-~~g~L--~d~di~~Vy~Li~d~~r~~~~aa~~ 428 (1048)
T KOG2011|consen 371 KDRIVEMADRDRNVSVRAVGLVLCLLL--S-SSGLL--SDKDILIVYSLIYDSNRRVAVAAGE 428 (1048)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHH--h-ccccc--ChhHHHHHHHHHhccCcchHHHHHH
Confidence 33344433 444445555444322211 1 11111 1233445677888888888877754
No 367
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=30.40 E-value=3.6e+02 Score=25.64 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=51.6
Q ss_pred hHhHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhChhhHhhhh--HHHHHH-HHHhcCC---CCHHHHHHHHHHHHHHh
Q 005727 277 VGPILSIATRQLSS-EWEATRIEALHWISTLLNRHRTEVLHFL--NDIFDT-LLKALSD---PSDEVVLLVLEVHACIA 348 (680)
Q Consensus 277 l~~iL~vL~~~L~~-~~~~tR~aaL~WL~~L~~~~p~~~~~~l--~~l~p~-LL~~LsD---~s~eV~~~al~lLa~Is 348 (680)
-...+..|.+.+.+ .+..+..-||..+-.+.+.|+..+.... .+.... |++.+++ ....|+.+.+.++..-+
T Consensus 36 ~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 36 PKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 35778889999974 5677777789999999999998876432 234444 6666664 34588888887766554
No 368
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=30.16 E-value=1.6e+02 Score=26.46 Aligned_cols=74 Identities=19% Similarity=0.295 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhcCC-CChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCccc
Q 005727 153 LPDFLDGLFNMLSD-SSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQL 231 (680)
Q Consensus 153 Lp~~L~~Lf~lLsD-~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l 231 (680)
+-.||..|.++.+| .++||...+.++...++. ..++.+++...|-..++++ ....+
T Consensus 6 ck~FL~tLi~las~~~spev~~~Vr~LV~~L~~-----~~i~~EeF~~~Lq~~lns~------------------pqP~l 62 (96)
T PF07531_consen 6 CKNFLNTLIQLASDKQSPEVGENVRELVQNLVD-----GKIEAEEFTSKLQEELNSS------------------PQPYL 62 (96)
T ss_dssp HHHHHHHHHHHHCCSC-CCHHHHHHHHHHHHHT-----TSS-HHHHHHHHHHHCTSS--------------------TTH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHhcCC------------------CCcch
Confidence 34688889999999 788888777655555542 1233444444443333321 23456
Q ss_pred ccchHhHHHHHhhhhcCC
Q 005727 232 VPYYADILGAILPCISDK 249 (680)
Q Consensus 232 ~pfLp~LLp~LL~~Lsds 249 (680)
+||+-+-+|++-..+.+.
T Consensus 63 vPFLK~~lp~Lr~~l~~~ 80 (96)
T PF07531_consen 63 VPFLKKSLPALRQELPNC 80 (96)
T ss_dssp HHHHHHHHHHHHHCHCHH
T ss_pred HHHHHHhHHHHHHHHHHH
Confidence 788888888877776653
No 369
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=30.03 E-value=4.5e+02 Score=30.29 Aligned_cols=63 Identities=16% Similarity=0.310 Sum_probs=43.9
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcC-CCChhHHHHHHHHHHHHHHHhh
Q 005727 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLS-DSSHEIRQQADSALWEFLQEIK 187 (680)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLs-D~~~dVR~~a~~~L~~fL~ei~ 187 (680)
.+.++..|...+...++..+..++.|+.. -.+++.|...|+ +.+.++...|+..|..+++.-.
T Consensus 32 ~~~ImDlLLklIs~d~~~~~~~ilewL~~-------------q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 32 TPAIMDLLLKLISTDKPESPTGILEWLAE-------------QNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred CcHHHHHHHHHHccCcccchHHHHHHHHH-------------hCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 45578888888888889999999999974 223445555554 3466777777777777766444
No 370
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]
Probab=29.77 E-value=2.5e+02 Score=34.35 Aligned_cols=138 Identities=11% Similarity=0.152 Sum_probs=93.2
Q ss_pred ChHHHHHHHHHhcCCC----CHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhc
Q 005727 193 DYGRMAEILVQRAASP----DEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDKEEKIRVVARETNEELRAIK 268 (680)
Q Consensus 193 d~~~II~iLl~~~~s~----d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v 268 (680)
.+++|-.+|.+++... ...-...|++.++.++..+.+.+-.|....|-.+...+..++++.+-+++.+.-.+...-
T Consensus 49 KL~KI~~yL~~R~~kdl~~~r~~~v~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~ 128 (819)
T KOG1877|consen 49 KLPKIGTYLEERCYKDLRRERFGSVKIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIE 128 (819)
T ss_pred hhhHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhc
Confidence 4788888888887632 112234577888888889999998899999999999999999998888887766665555
Q ss_pred cCC-CCCCChHhHHHHHHHhcCC---Cc--HHHHHHHHHHHHHHHhhC-----hhhHh--hhhHHHHHHHHHhcC
Q 005727 269 ADP-ADGFDVGPILSIATRQLSS---EW--EATRIEALHWISTLLNRH-----RTEVL--HFLNDIFDTLLKALS 330 (680)
Q Consensus 269 ~~~-~~~ldl~~iL~vL~~~L~~---~~--~~tR~aaL~WL~~L~~~~-----p~~~~--~~l~~l~p~LL~~Ls 330 (680)
++. .+..+|+..++...+...+ +. -..|.+.++-|..++.+. ...+. .|.+..+|.++.-+.
T Consensus 129 ~d~~sy~~~yd~Fi~kf~~l~he~~~~~~~~~lr~agl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~ 203 (819)
T KOG1877|consen 129 EDGPSYHRNYDFFISKFSSLCHERGDDDMKDCLRAAGLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLFELQ 203 (819)
T ss_pred ccCchhhhhhHHHHHHHHHHhhcccchhhhhhccHhhhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHHhhc
Confidence 554 3345678888766665543 11 124667666555444443 22221 257788887776654
No 371
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=29.71 E-value=87 Score=39.48 Aligned_cols=44 Identities=25% Similarity=0.401 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHH
Q 005727 126 LNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIR 172 (680)
Q Consensus 126 ~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR 172 (680)
+|.+||..||+||.. .++.++..|+|.|.+.|.-=+--.++-||
T Consensus 902 PDqeVR~~AVqwi~~---ls~DeL~d~LPQlVQALK~E~yl~S~Lv~ 945 (1639)
T KOG0905|consen 902 PDQEVRAHAVQWIAR---LSNDELLDYLPQLVQALKFELYLKSALVQ 945 (1639)
T ss_pred CcHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 678999999999975 56788999999999998644444444444
No 372
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=29.50 E-value=4.6e+02 Score=33.59 Aligned_cols=122 Identities=22% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCC---------CCChHHHHHHHH
Q 005727 132 QFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSP---------SVDYGRMAEILV 202 (680)
Q Consensus 132 ~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~---------~~d~~~II~iLl 202 (680)
+.++-.+.-+.-.+..++..++|.+|...|-.+....+-|++.|.+.|-.++.++.... ...-.+-+.-++
T Consensus 934 qlalifL~dl~~~~~~~~~~~lP~LLH~~~~~lDH~~~~V~e~a~~lL~~Li~~l~~~~~~l~e~~~s~~~~~~~i~~li 1013 (1120)
T PF14228_consen 934 QLALIFLVDLAVEPDEDLREHLPLLLHVIFVLLDHYTPLVQEQARELLVNLIHSLAPSKLELPEVDDSDSEQKQSIKSLI 1013 (1120)
T ss_pred HHHHHHHHHHHcCCcchHhhhhHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHHhccccccccccccchhhHHHHHHHH
Q ss_pred HhcCCCCH------------------------------------------------------HHHHHHHHHHHHHHHhcC
Q 005727 203 QRAASPDE------------------------------------------------------FTRLTAITWINEFVKLGG 228 (680)
Q Consensus 203 ~~~~s~d~------------------------------------------------------~irl~Al~WL~e~~~l~~ 228 (680)
..+...+. .+|..|+.=...|=.+.+
T Consensus 1014 ~~l~~~~~~~lW~yeD~~~~~~~~~s~~~l~~lv~~vv~~~~~~~~L~~~W~~~AL~WATsC~vRHlAcRSfQIFR~L~~ 1093 (1120)
T PF14228_consen 1014 EFLRSRDGSPLWSYEDSSGKRTEIPSPKQLSSLVRSVVEVFSFQPDLREQWGRVALNWATSCPVRHLACRSFQIFRALLP 1093 (1120)
T ss_pred HHHHhcCCCccccCCCCCccCCCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhHhcC
Q ss_pred cccccchHhHHHHHhhhhcCCchhH
Q 005727 229 DQLVPYYADILGAILPCISDKEEKI 253 (680)
Q Consensus 229 ~~l~pfLp~LLp~LL~~Lsds~~eI 253 (680)
..=..-+..+|..|-++++|..+++
T Consensus 1094 ~l~~~ml~dlL~rL~~~~~~~~~~v 1118 (1120)
T PF14228_consen 1094 SLDSDMLADLLARLSKTISDPSPEV 1118 (1120)
T ss_pred CCCHHHHHHHHHHHHHHhCCCcccc
No 373
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=29.04 E-value=1.7e+02 Score=27.89 Aligned_cols=131 Identities=18% Similarity=0.132 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhhhH-HHHhhccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHHHHHHHH
Q 005727 18 LYADLFFYSETILQQIV-PPVLNSFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQSAAHLL 96 (680)
Q Consensus 18 ~~~~~~~~~~~yL~~Iv-~~VL~~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA~~L 96 (680)
.|+++-..-+-|-..-+ ...+..++++|+.|+..|.+++..-- .++...-=+.|.++++|..-.-.-..-.+
T Consensus 2 lfakf~npk~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k-------~~~l~pY~d~L~~Lldd~~frdeL~~f~~ 74 (141)
T PF07539_consen 2 LFAKFKNPKSLYRSDELYDALLRLLSSRDPEVQKLALDCLLTWK-------DPYLTPYKDNLENLLDDKTFRDELTTFNL 74 (141)
T ss_pred hHhhcCCcHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------cHHHHhHHHHHHHHcCcchHHHHHHhhcc
Q ss_pred HHHHHHHhhccccccHhhhHHHHHHHhcCCCHHH------HHHHHHHHHHhhcCCchhhhhchHHHHHHHHH
Q 005727 97 DRLVKDIVTESDQFSIEEFIPLLRERMNVLNPYV------RQFLVGWITVLDSVPDIDMLGFLPDFLDGLFN 162 (680)
Q Consensus 97 drllkdiv~es~~f~L~~fIP~L~e~i~~~np~v------R~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~ 162 (680)
+.--.+|-.+.-..-++.++..|.-++....... |..+++++..+. ...+..|++-++.
T Consensus 75 ~~~~~~I~~ehR~~l~pvvlRILygk~~~~~~~~~~~~~rR~aIL~~L~~l~-------~~El~~Fl~l~~~ 139 (141)
T PF07539_consen 75 SDESSVIEEEHRPELMPVVLRILYGKMQSRKGSGSKKASRRAAILRFLAGLS-------EEELGLFLDLMLE 139 (141)
T ss_pred cCCcCCCCHHHHhHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHhCCC-------HHHHHHHHHHHhc
No 374
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=28.77 E-value=3.3e+02 Score=32.95 Aligned_cols=70 Identities=19% Similarity=0.176 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHhhcccc------hhH--HhHHHHHHHHHHhhcChhhHHHHHHHhhcccCChhH
Q 005727 339 LVLEVHACIAKDLQHFRQLVVFLVHNFRVDN------SLL--EKRGALIIRRLCVLLDAERVYRELSTILEGEADLDF 408 (680)
Q Consensus 339 ~al~lLa~Is~~~~~F~~fm~~LL~lf~~d~------~lL--e~rg~~IIrqLc~~L~~e~Iy~~La~iL~~~~Dl~F 408 (680)
.++.++..+......+..|+..|+..+++-- ..+ .....-.++.+...++++.+.+...-.+....|+.+
T Consensus 263 ~al~~l~~L~~~G~d~~~~l~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~q~~l~~~~~l~~ 340 (709)
T PRK08691 263 ALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPSALAHDDPDSDILHRLAQTISGEQIQLYYQIAVHGKRDLSL 340 (709)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCchhccccchHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc
Confidence 3445555555555667777777776665420 000 001123456666666666666655555544455444
No 375
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=28.55 E-value=5.2e+02 Score=26.47 Aligned_cols=98 Identities=18% Similarity=0.233 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHhhc-----c-ccccHhhhHHHHHHHhc--CCCHHHHHHHHHHHHH
Q 005727 69 IFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDIVTE-----S-DQFSIEEFIPLLRERMN--VLNPYVRQFLVGWITV 140 (680)
Q Consensus 69 ~~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkdiv~e-----s-~~f~L~~fIP~L~e~i~--~~np~vR~~avswI~~ 140 (680)
..-..||++||+...-.....|+-|+.+...+++.-.+ . ++-..+.-+-...+++. ..--..|.+||+....
T Consensus 69 e~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~f~YSRl~AIGL~~L 148 (206)
T PLN03060 69 TDRDAIFKAYIEALGEDPDQYRKDAKKLEEWASSQSASGIADFNSGDGEVEAVLKDIAERAAGKTKFHYSRFFAIGLFRL 148 (206)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHhcccccchHHHHHHHHhhcCCCcchHHHHHHHHHHH
Confidence 34578999999988766567888886555544422211 0 00012222333344442 3335899999999998
Q ss_pred hhcCCchhhhhchHHHHHHHHHhcCCCChhH
Q 005727 141 LDSVPDIDMLGFLPDFLDGLFNMLSDSSHEI 171 (680)
Q Consensus 141 L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dV 171 (680)
|....+. =|+.+..|..-|+=+...|
T Consensus 149 Le~a~~~-----d~~~l~~l~~~L~ls~~kv 174 (206)
T PLN03060 149 LECAKAS-----DPAVLEKLSKALNVSKRSV 174 (206)
T ss_pred HHHcCCC-----CHHHHHHHHHHcCCCHHHH
Confidence 8776653 2345555555554444433
No 376
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=27.94 E-value=2.6e+02 Score=25.63 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=52.9
Q ss_pred CChHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhcCC--c-------hhHHHHHHH
Q 005727 192 VDYGRMAEILVQRA---ASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAILPCISDK--E-------EKIRVVARE 259 (680)
Q Consensus 192 ~d~~~II~iLl~~~---~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Lsds--~-------~eIR~~A~~ 259 (680)
.++..|+++|..++ ...++.+...|+.-|.-++.-|++.++..+.+-+..|-...... + ..||+.|.+
T Consensus 35 ~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~ 114 (125)
T PF01417_consen 35 KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKE 114 (125)
T ss_dssp HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHH
Confidence 56889999999999 55668888999999999999999988888776666665554432 1 248888877
Q ss_pred HHH
Q 005727 260 TNE 262 (680)
Q Consensus 260 ~n~ 262 (680)
...
T Consensus 115 i~~ 117 (125)
T PF01417_consen 115 ILE 117 (125)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 377
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=27.50 E-value=3e+02 Score=26.49 Aligned_cols=130 Identities=17% Similarity=0.159 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcCCChhHH-HHHHHHHHHHHHHhhc--cccccHhhhHHHH
Q 005727 43 DQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSADSDANVQ-SAAHLLDRLVKDIVTE--SDQFSIEEFIPLL 119 (680)
Q Consensus 43 D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD~d~~Vr-~gA~~Ldrllkdiv~e--s~~f~L~~fIP~L 119 (680)
...+.+|-.|.-++..+-+..+......+.+.++.+ +.+++.+-. .+...+..++-. +.+ +.-|.-+.+++.+
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~---~~~~~~d~~i~~~~~l~~lfp~-~~dv~~~l~~~eg~~~~l 91 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKEKISDFIESL---LDEGEMDSLIIAFSALTALFPG-PPDVGSELFLSEGFLESL 91 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCHHCCHHHHHHHHHHHHCTT-THHHHHHHCCTTTHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HccccchhHHHHHHHHHHHhCC-CHHHHHHHHhhhhHHHHH
Confidence 357778988877776654444433333333333333 333332222 222444443221 111 1123345678888
Q ss_pred HHHhc--CCCHHHHHHHHHHHHHhhcCCchhhh-hchHHHHHHHHHhcCC-CChh-HHHHHHHH
Q 005727 120 RERMN--VLNPYVRQFLVGWITVLDSVPDIDML-GFLPDFLDGLFNMLSD-SSHE-IRQQADSA 178 (680)
Q Consensus 120 ~e~i~--~~np~vR~~avswI~~L~sip~~~Li-~~Lp~~L~~Lf~lLsD-~~~d-VR~~a~~~ 178 (680)
.+.+. .++..+...+++.+..=. .+.+-. .....+.+-|-+.... ++.. ||..|.-+
T Consensus 92 ~~~~~~~~~~~~~~~~~lell~aAc--~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~ 153 (157)
T PF11701_consen 92 LPLASRKSKDRKVQKAALELLSAAC--IDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVG 153 (157)
T ss_dssp HHHHH-CTS-HHHHHHHHHHHHHHT--TSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHH
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHH
Confidence 88887 777788888888776422 222222 2334455555566643 3344 67665433
No 378
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=27.21 E-value=4.3e+02 Score=31.76 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=24.4
Q ss_pred hHhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHH
Q 005727 277 VGPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLND 320 (680)
Q Consensus 277 l~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~ 320 (680)
-+.+...|...+..+....-..++.++....++.+......++.
T Consensus 180 ~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldq 223 (647)
T PRK07994 180 VEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQ 223 (647)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35666666655533222223456666666777777666555543
No 379
>PF14677 FANCI_S3: FANCI solenoid 3; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=27.11 E-value=3.6e+02 Score=27.70 Aligned_cols=130 Identities=11% Similarity=0.148 Sum_probs=0.0
Q ss_pred HhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCCh--hHHHHHHHHHHHHHHHh---
Q 005727 112 IEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSH--EIRQQADSALWEFLQEI--- 186 (680)
Q Consensus 112 L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~--dVR~~a~~~L~~fL~ei--- 186 (680)
..+++..+.+. .+.+..+-..|++++......-....-.-+++|+.++.-.-.+.+. ++-......++.|.+++
T Consensus 77 y~r~i~~~~~~-~d~~~~~s~LclEcf~~~~~~v~~~y~~k~~~FL~~i~~~~~~~~~~~d~~~~i~~~I~~f~r~~~~~ 155 (219)
T PF14677_consen 77 YWRCISRLSEV-EDFDKQVSLLCLECFLEILSTVCQRYPDKFSQFLSAIDMTDDNAEEEKDLTERIQFQIRQFQRELENF 155 (219)
T ss_dssp HHHHH-------------HHHHHHHHHHHHHHHHHHTSGGGHHHHHHHTS----STTTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchhh-cCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCccccccHHHHHHHHHHHHHHHHhhc
Q ss_pred --hcCCCCC------hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHh
Q 005727 187 --KNSPSVD------YGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAIL 243 (680)
Q Consensus 187 --~~~~~~d------~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL 243 (680)
....... +-.++..|..++.-.++..- .+..|+..|++--.-.=..+.+.++..++
T Consensus 156 ~s~~~e~~~~K~~~~Lv~ils~L~~~l~~~s~~~~-q~~~W~~~~ck~~~l~d~~~~k~ll~lLf 219 (219)
T PF14677_consen 156 LSSEEEDFNSKEAVLLVNILSQLSDHLDPSSDQFT-QMLSWTLKFCKENSLEDSSFCKGLLSLLF 219 (219)
T ss_dssp HHS--SS--SHHHHHHHHHHHHHTTSS-SSSSHHH-HHHHHHHHHHHS---S-HHHHHHHHHHHH
T ss_pred cccccccccchhHHHHHHHHHHHHhccCCCCHHHH-HHHHHHHHHHHhcCCCcHHHHHHHHHHhC
No 380
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=26.84 E-value=1.3e+03 Score=28.74 Aligned_cols=172 Identities=17% Similarity=0.129 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHhcCcccccchHhHHHHHhhhhc--
Q 005727 171 IRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDE-FTRLTAITWINEFVKLGGDQLVPYYADILGAILPCIS-- 247 (680)
Q Consensus 171 VR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~-~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Ls-- 247 (680)
+|.+..+.+++..-.-. .+-.-.++++-.++....+++. +.+...++.|+.++...++...|-.+.+++.+-..-.
T Consensus 509 ~~~a~~t~~~~~n~~~~-~~~~~lenl~~lvl~~~as~~~~~e~~~ll~~i~rii~~~~~~i~pl~~~il~~L~~lv~~~ 587 (947)
T COG5657 509 TREAYSTIFDDWNFSVC-SKIGLLENLILLVLSLMASPSSLEEREFLLQLISRIIIIDPELIAPLGSEILQLLDNLVEIN 587 (947)
T ss_pred HHHHHHHHHHhcccccc-cccccHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhCHHhhhhhHHHHHHHHHHHHHHH
Confidence 45555444444432111 1223467888888888887763 4677888999999999999999988888877665433
Q ss_pred CCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHH
Q 005727 248 DKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSE-WEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLL 326 (680)
Q Consensus 248 ds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~-~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL 326 (680)
-.+|..+..++..-......+.... .-.+..+|.+..-+.-+ ....-+.+...++.+...-..-...+....+|.++
T Consensus 588 ~knps~p~~~h~~fe~I~al~~~~~--~~~~~~ip~l~~~l~p~~~~l~~ed~~El~~~~lq~~s~l~e~f~~~~lp~v~ 665 (947)
T COG5657 588 AKNPSNPQFAHYTFEDIGALVFLKS--GMCEITIPTLVLALVPEFPVLLSEDATELWSYVLQLLSILPEHFSGDVLPSVV 665 (947)
T ss_pred ccCCccHHHHHHHHHHHHHHHHhhh--cccccchHHHHHhhCccchhhhhhhHHHHHHHHHHHHhhcchhhcCCcCchHH
Confidence 2355555544443333222221110 01134455555555432 22233444444444333321111122223355555
Q ss_pred HhcCCC--CHHHHHHHHHHHH
Q 005727 327 KALSDP--SDEVVLLVLEVHA 345 (680)
Q Consensus 327 ~~LsD~--s~eV~~~al~lLa 345 (680)
+-+..+ ++++-......++
T Consensus 666 ~~l~q~~~~t~ll~~~~~I~~ 686 (947)
T COG5657 666 KILRQPSLATELLPTKLEILK 686 (947)
T ss_pred HHHhcccCchHHHHHHHHHHH
Confidence 555553 2444433333333
No 381
>PRK13266 Thf1-like protein; Reviewed
Probab=25.77 E-value=6.3e+02 Score=26.22 Aligned_cols=78 Identities=23% Similarity=0.265 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH-----h---hccccccHhhhHHHHHHHhc-CCCHHHHHHHHHHHH
Q 005727 69 IFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDI-----V---TESDQFSIEEFIPLLRERMN-VLNPYVRQFLVGWIT 139 (680)
Q Consensus 69 ~~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkdi-----v---~es~~f~L~~fIP~L~e~i~-~~np~vR~~avswI~ 139 (680)
..-..||++||+...-.....|+-|..+...+++. . ++.+.-+.+.+...+..... ..--+.|.+||+...
T Consensus 71 e~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~i~~~l~~~~~~~~~~l~~~l~~ia~~~~f~YSRl~AIGL~~ 150 (225)
T PRK13266 71 EHKDSIFNALCQAVGFDPEQLRQDAERLLELAKGKSLKEILSWLTQKALGEPGGLLATLLAIANNSKFKYSRLFAIGLYT 150 (225)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHhccccccchhHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 34578999999988765567888885554444422 1 11111122223333333322 233478999999888
Q ss_pred HhhcCCc
Q 005727 140 VLDSVPD 146 (680)
Q Consensus 140 ~L~sip~ 146 (680)
.|....+
T Consensus 151 LLe~a~~ 157 (225)
T PRK13266 151 LLEEAQP 157 (225)
T ss_pred HHHhcCc
Confidence 7776654
No 382
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.75 E-value=4.5e+02 Score=23.37 Aligned_cols=74 Identities=24% Similarity=0.259 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHhhcCCC--hhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHhcCCC--HHHHHHHHHHHHHhhc
Q 005727 69 IFFNQIFDALCKLSADSD--ANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERMNVLN--PYVRQFLVGWITVLDS 143 (680)
Q Consensus 69 ~~f~eIfd~L~kL~aD~d--~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i~~~n--p~vR~~avswI~~L~s 143 (680)
..|+++...|-+.+.|+. -|||.+| ++...+-+ -.++...--..-|-.|-+--+|+| ..+|..+-+.+..|..
T Consensus 13 e~i~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~--e~e~p~vRaAtaIsiLeeisnDPNmP~h~RT~iw~vis~LE~ 90 (93)
T COG1698 13 EKINQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNN--EGESPAVRAATAISILEEISNDPNMPLHARTLIWNVISQLET 90 (93)
T ss_pred HHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhC--CCCCchhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHh
Confidence 456777777878787774 3999999 55444322 011111112234555555555655 2566666555555544
Q ss_pred C
Q 005727 144 V 144 (680)
Q Consensus 144 i 144 (680)
+
T Consensus 91 i 91 (93)
T COG1698 91 I 91 (93)
T ss_pred c
Confidence 3
No 383
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=25.59 E-value=1.4e+02 Score=29.51 Aligned_cols=48 Identities=23% Similarity=0.439 Sum_probs=35.2
Q ss_pred CCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchHhHHHHHh
Q 005727 191 SVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAIL 243 (680)
Q Consensus 191 ~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp~LLp~LL 243 (680)
.++...-++.|..... |+.||..|+.|+.. .+.+.+.-|+|+++.++-
T Consensus 68 p~~p~~ALeLL~~~f~--d~~VR~yAV~~L~~---~~ddeL~~yLpQLVQaLk 115 (169)
T cd00869 68 PLRPLIALELLLPKFP--DQEVRAHAVQWLAR---LSNDELLDYLPQLVQALK 115 (169)
T ss_pred CCCHHHHHHHcCCcCC--ChHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHH
Confidence 4566666776666554 47899999999974 677788888888877643
No 384
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=25.21 E-value=6.8e+02 Score=30.99 Aligned_cols=45 Identities=11% Similarity=0.047 Sum_probs=25.5
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHH
Q 005727 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLNDIF 322 (680)
Q Consensus 278 ~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~ 322 (680)
..+...|.+.+..+....-..++.++.....+.+......+++++
T Consensus 182 ~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLi 226 (824)
T PRK07764 182 EVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLL 226 (824)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 445555555554433333344566777777777766666666654
No 385
>cd08307 Death_Pelle Death domain of the protein kinase Pelle. Death domain (DD) of the protein kinase Pelle from Drosophila melanogaster and simlar proteins. In Drosophila, interaction between the DDs of Tube and Pelle is an important component of the Toll pathway, which functions in establishing dorsoventral polarity in embryos and in mediating innate immune responses to pathogens. Tube and Pelle transmit the signal from the Toll receptor to the Dorsal/Cactus complex. Pelle also functions in photoreceptor axon targeting. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=25.19 E-value=1.8e+02 Score=26.03 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=24.2
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhcCcchhhHHh
Q 005727 458 MAIISLCLLAQTYHHASAVIQSLVEEDLNVKFLVQ 492 (680)
Q Consensus 458 v~~~slcll~~~Y~~a~~ll~~~~~~~~~~~~l~q 492 (680)
|.-++.|-+ +.-..+..++..+|+-+-|+.+|++
T Consensus 39 v~~i~~~~~-~g~SPt~eLL~~WG~~n~Tv~~L~~ 72 (97)
T cd08307 39 VEGIQRCCL-RGRSPTEELLDIWGNKNHTITELFV 72 (97)
T ss_pred HHHHHHHHc-CCCChHHHHHHHHhhcCCCHHHHHH
Confidence 444555555 5556677788888888888888877
No 386
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=25.17 E-value=1e+03 Score=26.96 Aligned_cols=216 Identities=18% Similarity=0.257 Sum_probs=107.0
Q ss_pred hhhhhhh-hHHHHhhccCCCCHHHHHHHHHHHHHHHH-h--hccchhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHH
Q 005727 26 SETILQQ-IVPPVLNSFSDQDSRVRYYACEALYNIAK-V--VRGDFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLV 100 (680)
Q Consensus 26 ~~~yL~~-Iv~~VL~~l~D~d~rVR~~A~eaL~nI~k-v--~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrll 100 (680)
+++|.+. ++-.++.-|+..|+|-|.+--..|.+|-. - ++.-+....|.|| .+.+-.++. -+|. ++|.- +
T Consensus 170 aK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~firk~iNNif---~~FIyEte~--hnGIaELLEI-l 243 (457)
T KOG2085|consen 170 AKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFIRKSINNIF---LRFIYETER--HNGIAELLEI-L 243 (457)
T ss_pred HHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHHHHhhcchh---hhhcccccc--cCCHHHHHHH-H
Confidence 3566654 66889999999999999999888887732 1 2222222223332 233444443 2333 33222 1
Q ss_pred HHHhhccccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhh----------------hhchHHHHHHHHHhc
Q 005727 101 KDIVTESDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDM----------------LGFLPDFLDGLFNML 164 (680)
Q Consensus 101 kdiv~es~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~L----------------i~~Lp~~L~~Lf~lL 164 (680)
-.|+. .|+++. ..+.+.|++..+--|.+.....+ -.--|..+.||.+.-
T Consensus 244 gSiIn---gfAlPl------------KEEhkiFL~rvLipLhk~k~l~~yh~QLaYcivQfveKd~kl~~~VIrglLK~W 308 (457)
T KOG2085|consen 244 GSIIN---GFALPL------------KEEHKLFLVRVLIPLHKPKSLSLYHKQLAYCIVQFVEKDPKLTETVIRGLLKYW 308 (457)
T ss_pred HHhcC---cccCcc------------hhHHHHHHHHhhhccccCCCccccccccceeeeeeeccCccccHHHHHHHHHhc
Confidence 22221 122110 01233333333322222211110 123466777777765
Q ss_pred CC--CChhHHHHHHHHHHHHHHHhhcCCCCChHH----HHHHHHHhcCCCCHHHHHHHHH-HHHHH-HHhcCcccccchH
Q 005727 165 SD--SSHEIRQQADSALWEFLQEIKNSPSVDYGR----MAEILVQRAASPDEFTRLTAIT-WINEF-VKLGGDQLVPYYA 236 (680)
Q Consensus 165 sD--~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~----II~iLl~~~~s~d~~irl~Al~-WL~e~-~~l~~~~l~pfLp 236 (680)
-- +.++|-=. .-+.+.++.+. ...+.+ +...+-.++.+++-.|+..|+. |=.+. ..+-.+.-.-.+|
T Consensus 309 P~tnS~KEVmFL--~ElEEILe~ie---p~eFqk~~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilP 383 (457)
T KOG2085|consen 309 PKTNSSKEVMFL--NELEEILEVIE---PSEFQKIMVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILP 383 (457)
T ss_pred CCCCCcceeeeH--hhHHHHHHhcC---HHHHHHHhHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeee
Confidence 33 34444311 11333333332 113444 3344455667777789988888 66663 3343444444567
Q ss_pred hHHHHHhhhhcCC-chhHHHHHHHHHHHHHHh
Q 005727 237 DILGAILPCISDK-EEKIRVVARETNEELRAI 267 (680)
Q Consensus 237 ~LLp~LL~~Lsds-~~eIR~~A~~~n~~Ll~~ 267 (680)
.+.|++-++.... +..|...+.++...++++
T Consensus 384 iiFpaLyr~sk~hWN~~i~~l~~nvlk~f~em 415 (457)
T KOG2085|consen 384 IVFPALYRNSKSHWNQAIHNLILNVLKTFMEM 415 (457)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777665432 556666666655555544
No 387
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=25.03 E-value=1.3e+03 Score=27.96 Aligned_cols=187 Identities=15% Similarity=0.209 Sum_probs=101.0
Q ss_pred hhhHHHHhhccCCCCHHHHHHHHHHHHHHHHh----hccchh-hhHHHHHHHHHHhhcCCChhHHHHH---HHHHHHH--
Q 005727 31 QQIVPPVLNSFSDQDSRVRYYACEALYNIAKV----VRGDFI-IFFNQIFDALCKLSADSDANVQSAA---HLLDRLV-- 100 (680)
Q Consensus 31 ~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv----~~~~il-~~f~eIfd~L~kL~aD~d~~Vr~gA---~~Ldrll-- 100 (680)
...+|-+...+-|+++.+|.-|...+..+.+. ...+.- ...+++-..+.++ +....+..... .++..++
T Consensus 119 ~~~lPG~~~~Lf~~~~~~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i-~~~~~~~~~~~~fW~g~~~Il~~ 197 (727)
T PF12726_consen 119 KELLPGMTYFLFDGNPERRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRI-SPNNYNPDSVIRFWSGFSLILRL 197 (727)
T ss_pred ccccchhhhhhhcCCHHHHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHh-ccCCCChhHHHHHHHHHHHHHHH
Confidence 67889999999999999999999998776542 122221 1223333333333 22222222222 2222222
Q ss_pred --HHHhhcc-ccccHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhh----ch-----------HHHHHHHHH
Q 005727 101 --KDIVTES-DQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLG----FL-----------PDFLDGLFN 162 (680)
Q Consensus 101 --kdiv~es-~~f~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~----~L-----------p~~L~~Lf~ 162 (680)
+|.+.+. ..+.++.++.++...+.+.....-..++..+..|....+.++=. +- |.|-..|.+
T Consensus 198 ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~~~~l~~lL~~l~~lL~k~~~~FW~~~~~~~p~~ild~If~np~f~~~L~~ 277 (727)
T PF12726_consen 198 LDKEQITHSLRALELDPIYRLLLNHLSSNLSPPLPILLRCLSILLEKLGSDFWDAMGPISPQVILDQIFDNPAFKKLLLQ 277 (727)
T ss_pred ccHHHHHHHHhccccchHHHHHHHHhhcccchhHHHHHHHHHHHHHhCHHHHhcccCCCCHHHHHHHHhCChHHHHHHHh
Confidence 2333321 22334446777788887763444456667777776665555422 22 334444445
Q ss_pred hcCCCChhHH---HHHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHhcCCCC--HHHHHHHHH
Q 005727 163 MLSDSSHEIR---QQADSALWEFLQEIKNSPSVD-YGRMAEILVQRAASPD--EFTRLTAIT 218 (680)
Q Consensus 163 lLsD~~~dVR---~~a~~~L~~fL~ei~~~~~~d-~~~II~iLl~~~~s~d--~~irl~Al~ 218 (680)
...++....- ...-+=+..|++.+......+ ..+++..+..+.++.. ...|.+|+.
T Consensus 278 ~~~~~~~~~~~~~~~~~sWi~pf~~SL~~~~~~~~~~~l~~~Ll~~~q~~~~~~~~r~~c~~ 339 (727)
T PF12726_consen 278 SQEDEISESDDDLPDLLSWISPFLRSLSPSQRSQACRKLLHFLLERLQHDRFPDEARAACLR 339 (727)
T ss_pred hccCCccccchhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhccccchhHHHHHHH
Confidence 5544322111 122345667777776554444 4778888888877643 335655544
No 388
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=24.68 E-value=1.9e+02 Score=25.76 Aligned_cols=74 Identities=15% Similarity=0.190 Sum_probs=46.3
Q ss_pred hhhhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHh---hccchhhhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHH
Q 005727 28 TILQQIVPPVLNSFSDQDSRVRYYACEALYNIAKV---VRGDFIIFFNQIFDALCKLSADSDANVQSAAHLLDRLVK 101 (680)
Q Consensus 28 ~yL~~Iv~~VL~~l~D~d~rVR~~A~eaL~nI~kv---~~~~il~~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllk 101 (680)
.|...++..++.|--|.+..-|.+++.-+..+.+. .+..+...|..+++.+-.+.-|......+-|..+++++.
T Consensus 32 ~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~~~~~l~dl~~D~P~a~~~la~~~a~~v~ 108 (113)
T smart00544 32 EQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWRLLEDIEDLELDIPNAWRNLAEFVARLIS 108 (113)
T ss_pred cchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHhhChhhhcccccHHHHHHHHHHHHHH
Confidence 57888888888888888777777777666665432 222334455566666655555554455555566665543
No 389
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=24.42 E-value=2.8e+02 Score=26.82 Aligned_cols=58 Identities=12% Similarity=0.035 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHhhcC-CchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 005727 126 LNPYVRQFLVGWITVLDSV-PDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFL 183 (680)
Q Consensus 126 ~np~vR~~avswI~~L~si-p~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL 183 (680)
.+...-..++.++..+.+. .|.+.+-.-|..+..|...+..++..+|..+.+.|..++
T Consensus 128 ~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 128 EDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 4556777788999877654 445666668899999999999999999999988887654
No 390
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=23.75 E-value=1.3e+02 Score=26.51 Aligned_cols=59 Identities=20% Similarity=0.149 Sum_probs=45.7
Q ss_pred CCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcCCCCHH--HHHHHHHHHHHHh
Q 005727 290 SEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALSDPSDE--VVLLVLEVHACIA 348 (680)
Q Consensus 290 ~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~LsD~s~e--V~~~al~lLa~Is 348 (680)
+++|..|.-|-.-+..+..++.+..-.--+.++-.+.+.+.|++.. .+-=|+.-|+.++
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG 77 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALG 77 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 4679999999999999999988776666678888999999988643 3335666666654
No 391
>PF14961 BROMI: Broad-minded protein
Probab=23.72 E-value=1.6e+02 Score=37.50 Aligned_cols=54 Identities=19% Similarity=0.275 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhccchh--hhHHHHHHHHHHhhcCCChhHHHHH-HHHHHH
Q 005727 43 DQDSRVRYYACEALYNIAKVVRGDFI--IFFNQIFDALCKLSADSDANVQSAA-HLLDRL 99 (680)
Q Consensus 43 D~d~rVR~~A~eaL~nI~kv~~~~il--~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrl 99 (680)
++-..||..|++.|- ++.-++++ .+|+.+...|...++|+|+.+...+ ....+.
T Consensus 173 ~~P~evR~eAlq~Lc---~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~ 229 (1296)
T PF14961_consen 173 GQPKEVRLEALQILC---SAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKM 229 (1296)
T ss_pred CCchHHHHHHHHHHh---cCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 445789999998874 33344554 6899999999999999999998887 544444
No 392
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.61 E-value=5e+02 Score=30.04 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhcc
Q 005727 319 NDIFDTLLKALSDPSDEVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRV 367 (680)
Q Consensus 319 ~~l~p~LL~~LsD~s~eV~~~al~lLa~Is~~~~~F~~fm~~LL~lf~~ 367 (680)
.+++..+++++.+.++ ...++..+.++.+.......|+.+|+.++++
T Consensus 248 ~~~~~~l~~si~~~d~--~~~al~~l~~l~~~G~d~~~~~~~l~~~~r~ 294 (484)
T PRK14956 248 IEFLTSFIKSLIDPDN--HSKSLEILESLYQEGQDIYKFLWDSIEFTHT 294 (484)
T ss_pred HHHHHHHHHHHHcCCc--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3456666666655432 1346677777777777888888888888764
No 393
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=23.41 E-value=8.3e+02 Score=25.19 Aligned_cols=144 Identities=16% Similarity=0.225 Sum_probs=82.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHHh----h-cc----chhhhHHHHHHHHHHhhcCCChhHHHHH-HHHHHHHHHHhhc----
Q 005727 41 FSDQDSRVRYYACEALYNIAKV----V-RG----DFIIFFNQIFDALCKLSADSDANVQSAA-HLLDRLVKDIVTE---- 106 (680)
Q Consensus 41 l~D~d~rVR~~A~eaL~nI~kv----~-~~----~il~~f~eIfd~L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~e---- 106 (680)
+.|+|+.|-+.|..+..++-+. + .+ +....+.++=+.+...+.+..+.||-+| ..+.+.+--.-..
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~ 81 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS 81 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 5789999999987775554322 1 11 1123345555566666888888999888 6565554311111
Q ss_pred ------cccccH-------------------hhhHHHHHHHhcCCC--HHHHHHHHHHHHHhhcCCchhhhhchHHHHHH
Q 005727 107 ------SDQFSI-------------------EEFIPLLRERMNVLN--PYVRQFLVGWITVLDSVPDIDMLGFLPDFLDG 159 (680)
Q Consensus 107 ------s~~f~L-------------------~~fIP~L~e~i~~~n--p~vR~~avswI~~L~sip~~~Li~~Lp~~L~~ 159 (680)
.+++++ ..++..|...+++.. +..=..++.++..+...-+ .|++.+++.
T Consensus 82 ~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP----~~~~~Il~~ 157 (239)
T PF11935_consen 82 PPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRP----QFMSRILPA 157 (239)
T ss_dssp ---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSG----GGHHHHHHH
T ss_pred ccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhh----HHHHHHHHH
Confidence 011222 345666777776554 6666677777777776554 467888888
Q ss_pred HHHhcCCC--------ChhHHHHHHHHHHHHHHHhhc
Q 005727 160 LFNMLSDS--------SHEIRQQADSALWEFLQEIKN 188 (680)
Q Consensus 160 Lf~lLsD~--------~~dVR~~a~~~L~~fL~ei~~ 188 (680)
|..+-.+. ..-..+.+.+.+..++..+-+
T Consensus 158 ll~~~~~~~~~~~~~~~~~~v~sv~k~lk~~l~~llk 194 (239)
T PF11935_consen 158 LLSFNPNLSPMQPPTLSKLQVKSVEKTLKIFLLHLLK 194 (239)
T ss_dssp HHHHHHS------TTCSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCccccccCCccchHHHHHHHHHHHHHHHHHHHC
Confidence 87766554 223334455566666554444
No 394
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=23.40 E-value=6.1e+02 Score=28.54 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHhh-ccchHH------HHHHHHHHhhc
Q 005727 320 DIFDTLLKALSDPSDEVVLLVLEVHACIAK-DLQHFR------QLVVFLVHNFR 366 (680)
Q Consensus 320 ~l~p~LL~~LsD~s~eV~~~al~lLa~Is~-~~~~F~------~fm~~LL~lf~ 366 (680)
+-+.+|.+.|...++.|+..|+.++..+++ ++.-|+ .|...|..+..
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~ 98 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIE 98 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHh
Confidence 456678888888888888888888777663 344442 35555555544
No 395
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=23.19 E-value=1.1e+03 Score=26.70 Aligned_cols=232 Identities=16% Similarity=0.123 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhhHHHHHHH-HHHhhcCCChhHHHHH-HHHHHHHHHHhhccccccHhhhHHHHHHHh
Q 005727 46 SRVRYYACEALYNIAKVVRGDFIIFFNQIFDA-LCKLSADSDANVQSAA-HLLDRLVKDIVTESDQFSIEEFIPLLRERM 123 (680)
Q Consensus 46 ~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~-L~kL~aD~d~~Vr~gA-~~Ldrllkdiv~es~~f~L~~fIP~L~e~i 123 (680)
-+-|-+|+.+|..+......+ -.+++++. |..+++++...-|-.| -.+...++.........+.+.+.+.|.+.+
T Consensus 101 ~r~Ri~aA~ALG~l~~~~~~~---~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L 177 (441)
T PF12054_consen 101 IRARIAAAKALGLLLSYWPES---SLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL 177 (441)
T ss_pred HHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence 688999999998876544322 23566664 6677888877777766 445555443332222222467888888887
Q ss_pred cCCCH-----------HHHHHHHHHHHHhhcCCc--hhhhhchHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHHhhc
Q 005727 124 NVLNP-----------YVRQFLVGWITVLDSVPD--IDMLGFLPDFLDGLFNMLSDS--SHEIRQQADSALWEFLQEIKN 188 (680)
Q Consensus 124 ~~~np-----------~vR~~avswI~~L~sip~--~~Li~~Lp~~L~~Lf~lLsD~--~~dVR~~a~~~L~~fL~ei~~ 188 (680)
..+.+ .+|.-+-+.+..+.+... .+-++.+|...+|--..-.+. -.++.+.+....+.+.+.+..
T Consensus 178 ~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l~~ 257 (441)
T PF12054_consen 178 ENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSLSP 257 (441)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 74331 456666666665543222 233444443333211111110 012223333333334433322
Q ss_pred CCCCChHHHHHHHHHhcCCC-----------CHHHH---HHHHHHHHHHHHhcCcccccchHhHHHHHhhhhc-CCchhH
Q 005727 189 SPSVDYGRMAEILVQRAASP-----------DEFTR---LTAITWINEFVKLGGDQLVPYYADILGAILPCIS-DKEEKI 253 (680)
Q Consensus 189 ~~~~d~~~II~iLl~~~~s~-----------d~~ir---l~Al~WL~e~~~l~~~~l~pfLp~LLp~LL~~Ls-ds~~eI 253 (680)
....--.+.++---.++... +-.|+ ..|+.|++ .+=+-+..++..|+..+. .+++++
T Consensus 258 ~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~--------~lP~KLnPiIrpLMdSIK~Een~~L 329 (441)
T PF12054_consen 258 SQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALG--------GLPKKLNPIIRPLMDSIKREENELL 329 (441)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cCCCCccHHHHHHHHHhhccccHHH
Confidence 21110011111111111000 00111 11222332 111235556666666666 446788
Q ss_pred HHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcC
Q 005727 254 RVVARETNEELRAIKADPADGFDVGPILSIATRQLS 289 (680)
Q Consensus 254 R~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~ 289 (680)
+..+.++...|++.+.. ...-.-+.|++-|...+-
T Consensus 330 Q~rsA~slA~Li~~~~~-rkp~PndKIvkNLc~flC 364 (441)
T PF12054_consen 330 QQRSAESLARLIQLCVD-RKPCPNDKIVKNLCTFLC 364 (441)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCCcHHHHHHHhhhhc
Confidence 88888888888777652 222224677777776663
No 396
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=23.12 E-value=6.6e+02 Score=30.91 Aligned_cols=81 Identities=28% Similarity=0.343 Sum_probs=53.6
Q ss_pred hhHHhHHHHHHHHHHhhcChhhHHHHHHHhhcccCChhHHHHHHHHHHHHHhchHHH-HHHHHHHhhccCCcchHHHHHH
Q 005727 370 SLLEKRGALIIRRLCVLLDAERVYRELSTILEGEADLDFACTMVQALNLILLTSSEL-SELRDLLKKSLVNPAGKDLFVS 448 (680)
Q Consensus 370 ~lLe~rg~~IIrqLc~~L~~e~Iy~~La~iL~~~~Dl~F~~~mVq~Ln~iLLTa~EL-~~lR~~L~~~l~~~~~~~lF~~ 448 (680)
..|+.-|..|...+...+++ +++..|.++.+...+++-+..-.+.+|..+-.-.+. .+||..|++ -.+++-.+
T Consensus 213 ~~L~~~~~~lg~~i~~~l~~-~~~~~L~~i~~l~~~~~~~~~~L~~v~~~~~~L~~~~~qL~~~L~~-----vK~~L~~~ 286 (806)
T PF05478_consen 213 SDLDNIGSLLGGDIQDQLGS-NVYPALDSILDLAQAMQETKELLQNVNSSLKDLQEYQSQLRDGLRG-----VKRDLNNT 286 (806)
T ss_pred HHHHhccchhhHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 34445566666677777765 788999999875556666666666666665444444 566666665 24566677
Q ss_pred HHHHhccCh
Q 005727 449 LYASWCHSP 457 (680)
Q Consensus 449 L~~~w~~n~ 457 (680)
+-. +|+++
T Consensus 287 l~~-~C~~~ 294 (806)
T PF05478_consen 287 LQD-LCTNR 294 (806)
T ss_pred HHh-hCCCh
Confidence 777 99996
No 397
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=22.95 E-value=7.8e+02 Score=24.71 Aligned_cols=121 Identities=19% Similarity=0.210 Sum_probs=63.6
Q ss_pred ccCCCCHHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhcC----CChhHHHHHHHHHHHHHHHhhc-----cccc
Q 005727 40 SFSDQDSRVRYYACEALYNIAKVVRGDFIIFFNQIFDALCKLSAD----SDANVQSAAHLLDRLVKDIVTE-----SDQF 110 (680)
Q Consensus 40 ~l~D~d~rVR~~A~eaL~nI~kv~~~~il~~f~eIfd~L~kL~aD----~d~~Vr~gA~~Ldrllkdiv~e-----s~~f 110 (680)
.+.|++...--.+|..|.|+++.-.| -..|...-.+ ....+...+..++++++-++.. ...-
T Consensus 3 ~i~~~~~~~adl~~MLLsNlT~~~~~---------~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~ 73 (192)
T PF04063_consen 3 YITDPKSPLADLACMLLSNLTRSDSG---------CEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKD 73 (192)
T ss_pred eecCCCcchHHHHHHHHHHhccchHH---------HHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCc
Confidence 45688888888889999998763222 2222222222 2223333335566666666551 1122
Q ss_pred cHhhhHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchhhhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 005727 111 SIEEFIPLLRERMNVLNPYVRQFLVGWITVLDSVPDIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQ 184 (680)
Q Consensus 111 ~L~~fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ 184 (680)
+...+.+.+... ++-|..|++.+.- ..+.+ .+..|.-.+.-++..=|..+..++...+=
T Consensus 74 ~~~yla~vl~Nl--S~~~~gR~~~l~~------------~~~~~-~l~kLl~ft~~~s~iRR~Gva~~IrNccF 132 (192)
T PF04063_consen 74 NYDYLASVLANL--SQLPEGRQFFLDP------------QRYDG-PLQKLLPFTEHKSVIRRGGVAGTIRNCCF 132 (192)
T ss_pred chhHHHHHHHHh--cCCHHHHHHHhCc------------hhhhh-HHHHHHHHhccCcHHHHHHHHHHHHHhhc
Confidence 344445554442 3568888887611 11222 45666666666644444556555555543
No 398
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=22.87 E-value=1.3e+03 Score=27.88 Aligned_cols=153 Identities=16% Similarity=0.148 Sum_probs=85.5
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchH
Q 005727 157 LDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYA 236 (680)
Q Consensus 157 L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~~d~~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp 236 (680)
+..||.++.-++..+.+.+...+.+.+..-+. +-+++.|+..--+..... | +..++.+. -|+--
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~------~~l~~~l~~y~~~t~s~~---~---~~il~~~~----~P~~K 69 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQELLNSDRE------PWLVNGLVDYYLSTNSQR---A---LEILVGVQ----EPHDK 69 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhccch------HHHHHHHHHHHhhcCcHH---H---HHHHHhcC----CccHH
Confidence 34566777777777777766666666542211 134444444322222111 1 11112221 23334
Q ss_pred hHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCC---hHhHHHHHHHhc-CCCcHHHHHHHHHHHHHHHhhChh
Q 005727 237 DILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFD---VGPILSIATRQL-SSEWEATRIEALHWISTLLNRHRT 312 (680)
Q Consensus 237 ~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ld---l~~iL~vL~~~L-~~~~~~tR~aaL~WL~~L~~~~p~ 312 (680)
.++..|=.++... +-|..|....+.+.+ ..+..+. =-.+++.|...| .+.+..+-.+|+..|.++.=..|.
T Consensus 70 ~~~~~l~~~~~~~--~~Rl~~L~Ll~~~v~---~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~ 144 (668)
T PF04388_consen 70 HLFDKLNDYFVKP--SYRLQALTLLGHFVR---SQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS 144 (668)
T ss_pred HHHHHHHHHHcCc--hhHHHHHHHHHHHHh---cCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc
Confidence 4555555566643 455555555553332 2111110 023444444444 566677889999999999999999
Q ss_pred hHhhhhHHHHHHHHHhcC
Q 005727 313 EVLHFLNDIFDTLLKALS 330 (680)
Q Consensus 313 ~~~~~l~~l~p~LL~~Ls 330 (680)
.+.+|++++|....+.++
T Consensus 145 ~l~~~L~~Lf~If~Rl~~ 162 (668)
T PF04388_consen 145 SLGPHLPDLFNIFGRLLS 162 (668)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 999999999998887773
No 399
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=22.15 E-value=2.5e+02 Score=25.78 Aligned_cols=73 Identities=21% Similarity=0.267 Sum_probs=52.2
Q ss_pred CChHhHHHHHHHhc---CCCcHHHHHHHHHHHHHHHhhChhhHhhhhHHHHHHHHHhcC-----CC-----CHHHHHHHH
Q 005727 275 FDVGPILSIATRQL---SSEWEATRIEALHWISTLLNRHRTEVLHFLNDIFDTLLKALS-----DP-----SDEVVLLVL 341 (680)
Q Consensus 275 ldl~~iL~vL~~~L---~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~~l~p~LL~~Ls-----D~-----s~eV~~~al 341 (680)
.++..|+++|...| .+.+|.....||..|-.|....++.+...+..-.. .++.|. |+ ...||.+|-
T Consensus 35 ~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~-~I~~l~~f~~~d~~g~d~~~~VR~~A~ 113 (125)
T PF01417_consen 35 KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHID-IIRELQDFQYVDPKGKDQGQNVREKAK 113 (125)
T ss_dssp HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHH-HHHGGGG---BBTTSTBHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHhhcceeeccCCCCccHHHHHHHHHH
Confidence 45789999999999 77889999999999999999998887766644333 222322 22 124777777
Q ss_pred HHHHHHh
Q 005727 342 EVHACIA 348 (680)
Q Consensus 342 ~lLa~Is 348 (680)
+++..+.
T Consensus 114 ~i~~lL~ 120 (125)
T PF01417_consen 114 EILELLN 120 (125)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 7776654
No 400
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=21.83 E-value=1.2e+02 Score=27.44 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHhhcCCchh
Q 005727 116 IPLLRERMN--VLNPYVRQFLVGWITVLDSVPDID 148 (680)
Q Consensus 116 IP~L~e~i~--~~np~vR~~avswI~~L~sip~~~ 148 (680)
||.++.+.. +.||++|++++-+|.++..-++.+
T Consensus 30 i~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eN 64 (102)
T PF09759_consen 30 IPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPEN 64 (102)
T ss_pred hHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHH
No 401
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.78 E-value=6.8e+02 Score=29.40 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhhChhhHhhhhHH
Q 005727 296 RIEALHWISTLLNRHRTEVLHFLND 320 (680)
Q Consensus 296 R~aaL~WL~~L~~~~p~~~~~~l~~ 320 (680)
-.+++..+...+.+.+......++.
T Consensus 199 e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 199 DEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3344444444444444444444443
No 402
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=21.52 E-value=8e+02 Score=24.27 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=72.8
Q ss_pred chHhHHHHHhhhhcCCchhHHHHHHHHHHHHHHhccCCCCCCChHhHHHHHHHhcCCCc-----HHHHHHHHHHHHHHHh
Q 005727 234 YYADILGAILPCISDKEEKIRVVARETNEELRAIKADPADGFDVGPILSIATRQLSSEW-----EATRIEALHWISTLLN 308 (680)
Q Consensus 234 fLp~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll~~v~~~~~~ldl~~iL~vL~~~L~~~~-----~~tR~aaL~WL~~L~~ 308 (680)
...+++..+++.-.+.-+.+|..|.++...++..-.. ....++ =.+.|...+..++ |..=..+..-+..+..
T Consensus 4 ~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~--~~~~ip-~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL~ 80 (193)
T PF12612_consen 4 LVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDP--TIPHIP-HREELQDIFPSESEASLNWSSSSEYFPRLVKLLD 80 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--cccCCC-cHHHHHHHcccccccccccCCHHHHHHHHHHHhc
Confidence 3567888888888888889999999988766522111 001111 1233444343222 2211112221112222
Q ss_pred hChhhHhhhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh----hccchHHHHHHHHHHhhcccc
Q 005727 309 RHRTEVLHFLNDIFDTLLKALSDPSDEVVLLVLEVHACIA----KDLQHFRQLVVFLVHNFRVDN 369 (680)
Q Consensus 309 ~~p~~~~~~l~~l~p~LL~~LsD~s~eV~~~al~lLa~Is----~~~~~F~~fm~~LL~lf~~d~ 369 (680)
. -.|...++.-|+-+...-++.+++.+-..|..+. .+...+..++..+++.+.++.
T Consensus 81 ~-----~~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~~~ 140 (193)
T PF12612_consen 81 L-----PEYRYSLLSGLVVSAGGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKENL 140 (193)
T ss_pred c-----HHHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhC
Confidence 1 1455566666666777777788777777666665 355667778888888777653
No 403
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=21.16 E-value=1.1e+03 Score=26.85 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHhcCcccccchH--hHHHHHhhhhcCCchhHHHHHHHHHHHHH
Q 005727 195 GRMAEILVQRAASPD-EFTRLTAITWINEFVKLGGDQLVPYYA--DILGAILPCISDKEEKIRVVARETNEELR 265 (680)
Q Consensus 195 ~~II~iLl~~~~s~d-~~irl~Al~WL~e~~~l~~~~l~pfLp--~LLp~LL~~Lsds~~eIR~~A~~~n~~Ll 265 (680)
-+++.+|+.-++..+ |.+-..|++=|+++++..|+.-. -+. +-=..++..|.+++++||--|..+.+.+|
T Consensus 365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~-vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 365 YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKA-VVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhH-HHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 457888888887665 66667788889998887665411 011 11236788899999999999888877655
No 404
>PF06694 Plant_NMP1: Plant nuclear matrix protein 1 (NMP1); InterPro: IPR010604 This family consists of several plant specific nuclear matrix protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is a ubiquitously expressed 36 kDa protein, which has no homologues in animals and fungi, but is highly conserved among flowering and non-flowering plants. NMP1 is located both in the cytoplasm and nucleus and that the nuclear fraction is associated with the nuclear matrix. NMP1 is a candidate for a plant-specific structural protein with a function both in the nucleus and cytoplasm [].
Probab=20.91 E-value=1.1e+03 Score=25.64 Aligned_cols=50 Identities=24% Similarity=0.260 Sum_probs=25.5
Q ss_pred hhhHHHHHHHHHhc-CCCCH----HHHHHHHHHHHHHhhccchHHHHHHHHHHhhccc
Q 005727 316 HFLNDIFDTLLKAL-SDPSD----EVVLLVLEVHACIAKDLQHFRQLVVFLVHNFRVD 368 (680)
Q Consensus 316 ~~l~~l~p~LL~~L-sD~s~----eV~~~al~lLa~Is~~~~~F~~fm~~LL~lf~~d 368 (680)
.++..++..+-.+. .|... +-+.++++++-.|+++.+ .|...-.++|+.|
T Consensus 104 ~~l~~IVDlVeas~~~~n~e~Sl~eQ~~kD~~LiD~IaE~~~---QvFs~~ckLFP~D 158 (325)
T PF06694_consen 104 EFLRLIVDLVEASMYADNPEWSLDEQFAKDIQLIDAIAEKQQ---QVFSEECKLFPPD 158 (325)
T ss_pred HHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhHH---HHHhhhcCcCCHH
Confidence 44555555554333 23322 234478999999995422 3333344444443
No 405
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.68 E-value=5.5e+02 Score=29.96 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=15.8
Q ss_pred HHHHHHhhcChhhHHHHHHHhhcccCChh
Q 005727 379 IIRRLCVLLDAERVYRELSTILEGEADLD 407 (680)
Q Consensus 379 IIrqLc~~L~~e~Iy~~La~iL~~~~Dl~ 407 (680)
.|+++...++++.+...+..++....|+.
T Consensus 311 ~~~~~a~~~s~~~l~~~~~~~~~~~~~~~ 339 (527)
T PRK14969 311 RLLDLAKRLSPEDIQLYYQIALHGRRDLG 339 (527)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhh
Confidence 35556666666666555555554444443
No 406
>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29. Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.
Probab=20.60 E-value=7.3e+02 Score=25.57 Aligned_cols=98 Identities=18% Similarity=0.200 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH-----hh---ccccccHhhhHHHHHHHhc--CCCHHHHHHHHHHH
Q 005727 69 IFFNQIFDALCKLSADSDANVQSAAHLLDRLVKDI-----VT---ESDQFSIEEFIPLLRERMN--VLNPYVRQFLVGWI 138 (680)
Q Consensus 69 ~~f~eIfd~L~kL~aD~d~~Vr~gA~~Ldrllkdi-----v~---es~~f~L~~fIP~L~e~i~--~~np~vR~~avswI 138 (680)
..-..||++||+...-.....|+-|+.+...+++. .. ..+.-+.+.+ .+..+. ..--..|.+||+..
T Consensus 71 e~~~~IF~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~i~~~l~~~~~~~~~~l---~l~~ia~n~~f~YSRl~AIGL~ 147 (214)
T TIGR03060 71 EHLDALFDALCNSNGFDPEQLREDAKQLLEQAKGKGLDEILSWLTQANLSNGGGD---TLQGIAGRHKFKYSRLFAIGLY 147 (214)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHhccccCCcchh---HHHHHhcCCCcchHHHHHHHHH
Confidence 34578999999988766667888886555444422 11 1111111111 233332 22237899999988
Q ss_pred HHhhcCCchhhh--hchHHHHHHHHHhcCCCCh
Q 005727 139 TVLDSVPDIDML--GFLPDFLDGLFNMLSDSSH 169 (680)
Q Consensus 139 ~~L~sip~~~Li--~~Lp~~L~~Lf~lLsD~~~ 169 (680)
..|....+.... .-.+..+..|..-|+=+..
T Consensus 148 ~LLe~a~~~~~~d~~~~~~~l~~l~~~L~ls~~ 180 (214)
T TIGR03060 148 SLLEEAAPDKDIDEEDLNEILKELSEALGLSYD 180 (214)
T ss_pred HHHHhcCcccccCHHHHHHHHHHHHHHcCCCHH
Confidence 887765542111 1244455555544444433
No 407
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=20.59 E-value=1.7e+03 Score=27.65 Aligned_cols=81 Identities=20% Similarity=0.265 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHhhcCCCh-hHHHHHHHHHHHHHHHhhcccc------------c----cHhhhHHHHHHHhcC----CC
Q 005727 69 IFFNQIFDALCKLSADSDA-NVQSAAHLLDRLVKDIVTESDQ------------F----SIEEFIPLLRERMNV----LN 127 (680)
Q Consensus 69 ~~f~eIfd~L~kL~aD~d~-~Vr~gA~~Ldrllkdiv~es~~------------f----~L~~fIP~L~e~i~~----~n 127 (680)
...+.++..|-+.+.+... .--.-|+.|-.+++.+++|... + .-..-+..+.+++.+ .+
T Consensus 163 ~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~ 242 (802)
T PF13764_consen 163 NALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSN 242 (802)
T ss_pred CCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCC
Confidence 4567788888777766541 1111123344455555554321 1 123447777777764 46
Q ss_pred HHHHHHHHHHHHHhhcCCchhh
Q 005727 128 PYVRQFLVGWITVLDSVPDIDM 149 (680)
Q Consensus 128 p~vR~~avswI~~L~sip~~~L 149 (680)
+.+++.+...|..|.--.+..+
T Consensus 243 ~~i~~~l~RiLP~Lt~G~~e~m 264 (802)
T PF13764_consen 243 PQILQALARILPFLTYGNEEKM 264 (802)
T ss_pred HHHHHHHHHHhhHHhcCCHHHH
Confidence 8999999999988875555433
No 408
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=20.30 E-value=5.9e+02 Score=29.38 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 005727 43 DQDSRVRYYACEALYNIAK 61 (680)
Q Consensus 43 D~d~rVR~~A~eaL~nI~k 61 (680)
..|.-.|++||.++..++.
T Consensus 318 skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 318 SKDELLRLHACLAVAVLAT 336 (832)
T ss_pred chHHHHHHHHHHHHhhhhh
Confidence 4588899999999877764
No 409
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=20.25 E-value=5.4e+02 Score=33.95 Aligned_cols=215 Identities=14% Similarity=0.075 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHHHH--HhhccchhhhHHHHHHHHH-HhhcCCChhHHHHHHHHHH-------HHHHHhhccccccHhh
Q 005727 45 DSRVRYYACEALYNIA--KVVRGDFIIFFNQIFDALC-KLSADSDANVQSAAHLLDR-------LVKDIVTESDQFSIEE 114 (680)
Q Consensus 45 d~rVR~~A~eaL~nI~--kv~~~~il~~f~eIfd~L~-kL~aD~d~~Vr~gA~~Ldr-------llkdiv~es~~f~L~~ 114 (680)
.-.+|.||+++|.|+. .+....-+---.....++. .+.+++|.-.+=-|..|-+ =.|.++.|.+ .
T Consensus 364 ~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~G-----s 438 (2195)
T KOG2122|consen 364 CNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETG-----S 438 (2195)
T ss_pred HHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhh-----h
Confidence 4678999999999974 2222222212223333433 3456664422222222322 1233333332 1
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHhhcCCchh--hhhchHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHhhcCCC-
Q 005727 115 FIPLLRERMNVLNPYVRQFLVGWITVLDSVPDID--MLGFLPDFLDGLFNMLSDSSHEIRQQADSALWEFLQEIKNSPS- 191 (680)
Q Consensus 115 fIP~L~e~i~~~np~vR~~avswI~~L~sip~~~--Li~~Lp~~L~~Lf~lLsD~~~dVR~~a~~~L~~fL~ei~~~~~- 191 (680)
..-+..-.+...+..+-+.+++.+.+|......+ =+--.|.-|.-|..+|+=..+.--.+-.+--+.+|+.+-....
T Consensus 439 VtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt 518 (2195)
T KOG2122|consen 439 VTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIAT 518 (2195)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhc
Confidence 2333444556667777788888888886543322 2334555556565555432111000000001111221111000
Q ss_pred -CCh------HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCcccccchH--hHHHHHhhhhcCCchhHHHHHHHHHH
Q 005727 192 -VDY------GRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYA--DILGAILPCISDKEEKIRVVARETNE 262 (680)
Q Consensus 192 -~d~------~~II~iLl~~~~s~d~~irl~Al~WL~e~~~l~~~~l~pfLp--~LLp~LL~~Lsds~~eIR~~A~~~n~ 262 (680)
-++ .+.+.+|++++++..--|-..+|..|-.+..-.+++ ..||- .-++.+...+...+..|-..+..+..
T Consensus 519 ~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~D-Qq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALr 597 (2195)
T KOG2122|consen 519 CEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPED-QQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALR 597 (2195)
T ss_pred cchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHH-HHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 022 456777888877655444555565554443323221 12221 12344444445556666655555555
Q ss_pred HHH
Q 005727 263 ELR 265 (680)
Q Consensus 263 ~Ll 265 (680)
.++
T Consensus 598 NLl 600 (2195)
T KOG2122|consen 598 NLL 600 (2195)
T ss_pred HHh
Confidence 444
No 410
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.02 E-value=7.7e+02 Score=30.97 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=22.3
Q ss_pred HhHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhChhhHhhhhH
Q 005727 278 GPILSIATRQLSSEWEATRIEALHWISTLLNRHRTEVLHFLN 319 (680)
Q Consensus 278 ~~iL~vL~~~L~~~~~~tR~aaL~WL~~L~~~~p~~~~~~l~ 319 (680)
+.+...|...+..+....-..++..+..+.++.+......++
T Consensus 181 eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLd 222 (944)
T PRK14949 181 DEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTD 222 (944)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 445555555443322222334666666777777666555544
Done!